Query 001988
Match_columns 985
No_of_seqs 1031 out of 6531
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 07:37:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001988.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001988hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.2E-89 1.8E-93 847.2 43.5 627 24-664 6-756 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.4E-69 4.7E-74 673.0 35.2 540 73-623 100-742 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-63 3.6E-68 614.6 38.7 575 73-650 25-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 5.1E-60 1.7E-64 581.8 41.7 556 77-642 8-594 (680)
5 4eco_A Uncharacterized protein 100.0 9.7E-61 3.3E-65 580.0 25.6 511 29-625 29-603 (636)
6 3t6q_A CD180 antigen; protein- 100.0 2.5E-59 8.5E-64 567.9 34.9 534 77-627 16-565 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-58 5.5E-63 560.7 33.0 529 77-627 15-563 (606)
8 3t6q_A CD180 antigen; protein- 100.0 6.8E-58 2.3E-62 555.2 32.9 527 63-602 14-564 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 2E-57 6.9E-62 569.6 36.7 510 97-627 24-565 (844)
10 4ecn_A Leucine-rich repeat pro 100.0 4.8E-58 1.6E-62 564.2 26.3 505 28-598 267-864 (876)
11 3vq2_A TLR4, TOLL-like recepto 100.0 2E-56 7E-61 542.2 30.1 531 99-650 13-563 (606)
12 3j0a_A TOLL-like receptor 5; m 100.0 5.6E-56 1.9E-60 556.5 34.8 526 101-650 8-565 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 2.5E-52 8.5E-57 502.7 32.6 508 78-628 12-537 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 2.7E-53 9.2E-58 508.6 23.5 498 60-627 3-515 (549)
15 2z63_A TOLL-like receptor 4, v 100.0 1.1E-50 3.7E-55 488.4 28.6 491 73-603 28-536 (570)
16 4g8a_A TOLL-like receptor 4; l 100.0 5.5E-50 1.9E-54 488.7 32.5 529 79-626 37-584 (635)
17 4ecn_A Leucine-rich repeat pro 100.0 4.4E-50 1.5E-54 493.5 23.1 483 97-622 323-864 (876)
18 4eco_A Uncharacterized protein 100.0 1.8E-50 6.1E-55 490.0 18.9 472 97-647 81-602 (636)
19 2z81_A CD282 antigen, TOLL-lik 100.0 1.7E-49 5.8E-54 475.6 26.3 481 151-649 11-514 (549)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.4E-49 4.6E-54 473.0 20.1 437 170-627 21-486 (520)
21 2z7x_B TOLL-like receptor 1, v 100.0 2.4E-48 8.2E-53 462.2 23.2 460 77-602 4-485 (520)
22 4asz_A BDNF/NT-3 growth factor 100.0 9.3E-49 3.2E-53 425.0 14.0 249 726-978 13-292 (299)
23 4aoj_A High affinity nerve gro 100.0 2.7E-48 9.1E-53 427.4 17.2 249 726-978 41-322 (329)
24 3omv_A RAF proto-oncogene seri 100.0 1.8E-47 6.2E-52 414.6 19.0 249 724-979 34-304 (307)
25 4gt4_A Tyrosine-protein kinase 100.0 7.9E-48 2.7E-52 419.5 14.9 244 726-973 26-304 (308)
26 4g8a_A TOLL-like receptor 4; l 100.0 3.3E-46 1.1E-50 455.4 30.1 512 73-600 52-582 (635)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-46 3.7E-51 451.8 20.6 448 160-627 45-515 (562)
28 4fih_A Serine/threonine-protei 100.0 3.4E-46 1.2E-50 409.4 15.7 235 726-968 74-323 (346)
29 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.7E-46 2.3E-50 445.0 18.7 465 76-602 34-514 (562)
30 4ase_A Vascular endothelial gr 100.0 4.5E-46 1.5E-50 412.8 15.2 259 716-978 54-350 (353)
31 4b9d_A Serine/threonine-protei 100.0 4.4E-46 1.5E-50 409.2 14.6 237 726-968 24-276 (350)
32 4aw0_A HPDK1, 3-phosphoinositi 100.0 5.5E-46 1.9E-50 401.5 14.1 237 726-967 32-283 (311)
33 4g3f_A NF-kappa-beta-inducing 100.0 6.2E-46 2.1E-50 406.2 14.6 243 725-977 57-318 (336)
34 4fie_A Serine/threonine-protei 100.0 6.7E-45 2.3E-49 409.0 18.7 235 726-968 151-400 (423)
35 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-44 3.7E-49 400.1 19.4 293 26-350 2-302 (313)
36 3hmm_A TGF-beta receptor type- 100.0 9.6E-45 3.3E-49 396.5 17.4 246 726-976 3-298 (303)
37 3hyh_A Carbon catabolite-derep 100.0 2.6E-44 8.9E-49 383.4 17.2 234 726-968 13-262 (275)
38 3fpq_A Serine/threonine-protei 100.0 2E-44 6.8E-49 387.9 16.2 230 729-968 29-282 (290)
39 1jl5_A Outer protein YOPM; leu 100.0 3.9E-43 1.3E-47 407.0 24.4 422 95-627 9-434 (454)
40 3ubd_A Ribosomal protein S6 ki 100.0 2.2E-44 7.5E-49 389.3 9.9 231 726-963 24-271 (304)
41 1jl5_A Outer protein YOPM; leu 100.0 8.9E-43 3E-47 404.0 23.8 403 144-627 10-416 (454)
42 3v47_A TOLL-like receptor 5B a 100.0 2.1E-42 7.1E-47 404.0 27.0 384 198-628 14-414 (455)
43 4g31_A Eukaryotic translation 100.0 1.4E-43 4.9E-48 385.0 15.3 238 725-968 4-279 (299)
44 3v47_A TOLL-like receptor 5B a 100.0 4.4E-42 1.5E-46 401.1 25.7 389 149-602 14-412 (455)
45 3bz5_A Internalin-J, INLJ; leu 100.0 2.9E-40 9.8E-45 383.3 26.3 363 86-556 31-393 (457)
46 4b99_A Mitogen-activated prote 100.0 9.7E-41 3.3E-45 376.7 18.1 238 725-968 53-344 (398)
47 4f9c_A Cell division cycle 7-r 100.0 3.4E-40 1.2E-44 368.4 16.1 235 724-968 19-352 (361)
48 3bz5_A Internalin-J, INLJ; leu 100.0 4.7E-39 1.6E-43 373.1 24.1 354 167-627 39-392 (457)
49 1o6v_A Internalin A; bacterial 100.0 2E-38 6.9E-43 370.7 29.0 345 169-599 45-389 (466)
50 3uto_A Twitchin; kinase, muscl 100.0 2.1E-39 7.3E-44 384.2 18.9 237 725-968 156-410 (573)
51 1o6v_A Internalin A; bacterial 100.0 4.5E-38 1.5E-42 367.8 29.8 346 143-551 44-389 (466)
52 3v5w_A G-protein coupled recep 100.0 1.8E-39 6.3E-44 380.4 15.6 235 725-968 188-449 (689)
53 2qkw_B Protein kinase; three-h 100.0 9.2E-39 3.1E-43 354.7 16.6 258 716-977 29-317 (321)
54 2id5_A Lingo-1, leucine rich r 100.0 3.4E-38 1.2E-42 370.5 22.2 348 268-649 13-360 (477)
55 3s95_A LIMK-1, LIM domain kina 100.0 1.7E-38 5.7E-43 350.8 17.8 250 725-978 9-285 (310)
56 3uim_A Brassinosteroid insensi 100.0 4.7E-38 1.6E-42 349.9 18.6 260 712-973 16-309 (326)
57 2psq_A Fibroblast growth facto 100.0 9.9E-38 3.4E-42 352.7 20.2 250 725-978 80-367 (370)
58 2id5_A Lingo-1, leucine rich r 100.0 2.9E-37 9.8E-42 362.6 22.4 322 244-599 13-334 (477)
59 3cbl_A C-FES, proto-oncogene t 100.0 3.9E-38 1.3E-42 357.4 14.4 250 724-977 112-376 (377)
60 3fxz_A Serine/threonine-protei 100.0 1.4E-37 4.9E-42 340.7 18.4 236 725-968 19-269 (297)
61 2nru_A Interleukin-1 receptor- 100.0 6.7E-37 2.3E-41 337.5 23.7 260 710-975 9-306 (307)
62 3ugc_A Tyrosine-protein kinase 100.0 3.9E-38 1.3E-42 345.3 13.5 249 725-977 9-293 (295)
63 3kul_A Ephrin type-A receptor 100.0 2E-37 6.7E-42 344.2 18.7 250 725-978 48-316 (325)
64 4hcu_A Tyrosine-protein kinase 100.0 1.5E-37 5.1E-42 335.7 17.2 246 725-976 9-267 (269)
65 3soc_A Activin receptor type-2 100.0 2E-37 6.7E-42 343.9 17.6 244 725-976 23-319 (322)
66 3sxs_A Cytoplasmic tyrosine-pr 100.0 2.5E-37 8.6E-42 333.8 17.9 246 725-976 7-265 (268)
67 3vhe_A Vascular endothelial gr 100.0 1.9E-37 6.6E-42 349.9 15.6 261 714-978 10-358 (359)
68 3p86_A Serine/threonine-protei 100.0 5.2E-37 1.8E-41 338.1 18.4 247 724-977 35-300 (309)
69 2c30_A Serine/threonine-protei 100.0 1.1E-36 3.9E-41 337.4 20.5 248 714-969 23-295 (321)
70 3gen_A Tyrosine-protein kinase 100.0 2.3E-37 7.9E-42 336.9 14.3 247 724-976 22-281 (283)
71 1luf_A Muscle-specific tyrosin 100.0 3.6E-37 1.2E-41 345.3 16.0 256 723-982 44-342 (343)
72 3o6n_A APL1; leucine-rich repe 100.0 6.9E-36 2.4E-40 341.1 26.8 296 160-504 59-354 (390)
73 3fe3_A MAP/microtubule affinit 100.0 8E-37 2.7E-41 338.9 18.3 238 724-969 13-265 (328)
74 3tt0_A Basic fibroblast growth 100.0 1.3E-36 4.3E-41 345.8 20.2 251 724-978 67-355 (382)
75 2qol_A Ephrin receptor; recept 100.0 5.1E-37 1.7E-41 347.1 16.6 248 725-976 44-310 (373)
76 3zgw_A Maternal embryonic leuc 100.0 5.5E-37 1.9E-41 342.1 16.3 240 724-969 8-261 (347)
77 1tki_A Titin; serine kinase, m 100.0 2.5E-36 8.6E-41 334.4 19.6 237 725-969 4-258 (321)
78 3l9p_A Anaplastic lymphoma kin 100.0 4.4E-37 1.5E-41 347.2 13.7 249 725-977 70-347 (367)
79 1t46_A HOMO sapiens V-KIT hard 100.0 2E-36 6.8E-41 334.6 18.5 252 724-979 21-311 (313)
80 2ivs_A Proto-oncogene tyrosine 100.0 1.8E-36 6.1E-41 335.2 18.0 249 724-976 21-312 (314)
81 3lb7_A RAF proto-oncogene seri 100.0 2E-36 6.7E-41 333.3 18.2 249 724-979 34-304 (307)
82 1rjb_A FL cytokine receptor; k 100.0 1.8E-36 6.2E-41 339.8 18.3 254 723-980 42-339 (344)
83 3oja_B Anopheles plasmodium-re 100.0 1.3E-35 4.6E-40 357.4 26.8 296 160-504 65-360 (597)
84 3poz_A Epidermal growth factor 100.0 9.2E-37 3.2E-41 339.3 15.4 247 725-976 14-279 (327)
85 3niz_A Rhodanese family protei 100.0 3.7E-36 1.3E-40 331.8 20.1 237 725-968 20-300 (311)
86 1o6l_A RAC-beta serine/threoni 100.0 2.9E-36 9.9E-41 335.3 18.8 237 725-968 4-260 (337)
87 3tki_A Serine/threonine-protei 100.0 1E-36 3.6E-41 337.9 14.8 240 725-969 6-262 (323)
88 4fcg_A Uncharacterized protein 100.0 2E-36 6.8E-41 336.0 16.9 280 26-328 23-314 (328)
89 1csn_A Casein kinase-1; phosph 100.0 4.8E-36 1.6E-40 329.1 19.6 248 725-979 9-287 (298)
90 4eqm_A Protein kinase; transfe 100.0 1.3E-36 4.6E-41 332.6 14.8 246 725-976 10-276 (294)
91 3t9t_A Tyrosine-protein kinase 100.0 2.7E-36 9.1E-41 325.5 16.9 246 725-976 7-265 (267)
92 1qcf_A Haematopoetic cell kina 100.0 1.5E-36 5E-41 353.0 15.7 254 720-980 182-449 (454)
93 2yab_A Death-associated protei 100.0 5E-36 1.7E-40 336.5 19.2 236 725-968 11-272 (361)
94 2pvf_A Fibroblast growth facto 100.0 6.1E-36 2.1E-40 333.9 19.7 251 724-978 33-321 (334)
95 2izr_A Casein kinase I isoform 100.0 6.8E-36 2.3E-40 332.9 19.6 245 725-977 8-283 (330)
96 4e5w_A Tyrosine-protein kinase 100.0 3.1E-36 1.1E-40 331.3 16.1 246 725-974 20-301 (302)
97 3q4u_A Activin receptor type-1 100.0 8.7E-36 3E-40 327.5 19.3 242 725-973 7-300 (301)
98 2xir_A Vascular endothelial gr 100.0 3.8E-36 1.3E-40 332.9 16.4 260 715-978 16-313 (316)
99 1mp8_A Focal adhesion kinase 1 100.0 5E-36 1.7E-40 326.0 16.8 248 724-977 13-278 (281)
100 2eva_A TAK1 kinase - TAB1 chim 100.0 7E-36 2.4E-40 329.1 18.0 243 726-979 8-267 (307)
101 1k9a_A Carboxyl-terminal SRC k 100.0 8.6E-36 2.9E-40 345.9 19.6 241 724-976 191-446 (450)
102 2w1i_A JAK2; chromosomal rearr 100.0 4.6E-36 1.6E-40 333.7 16.5 249 725-977 40-324 (326)
103 3qd2_B Eukaryotic translation 100.0 5E-36 1.7E-40 334.4 16.8 241 724-968 4-325 (332)
104 3qup_A Tyrosine-protein kinase 100.0 3.8E-36 1.3E-40 334.0 15.8 250 724-977 21-300 (323)
105 3p1a_A MYT1 kinase, membrane-a 100.0 3.1E-36 1.1E-40 332.6 14.8 235 725-968 56-304 (311)
106 2y0a_A Death-associated protei 100.0 1.1E-35 3.7E-40 330.4 19.1 236 725-968 10-271 (326)
107 3soa_A Calcium/calmodulin-depe 100.0 9.3E-36 3.2E-40 343.1 19.1 238 724-968 9-267 (444)
108 4aw2_A Serine/threonine-protei 100.0 2.2E-36 7.5E-41 347.0 13.8 246 718-968 66-338 (437)
109 1kob_A Twitchin; kinase, intra 100.0 8.5E-36 2.9E-40 337.7 18.4 237 725-968 50-304 (387)
110 1ob3_A PFPK5, cell division co 100.0 4.7E-36 1.6E-40 327.4 15.7 236 726-968 2-280 (288)
111 3txo_A PKC-L, NPKC-ETA, protei 100.0 3E-36 1E-40 337.4 14.5 233 724-963 21-269 (353)
112 3kex_A Receptor tyrosine-prote 100.0 1.7E-36 5.9E-41 336.9 12.2 248 725-977 12-278 (325)
113 3lxl_A Tyrosine-protein kinase 100.0 3.7E-36 1.3E-40 334.7 14.8 249 725-977 22-305 (327)
114 3og7_A AKAP9-BRAF fusion prote 100.0 4.2E-36 1.4E-40 328.0 14.8 245 724-975 22-288 (289)
115 3c0i_A Peripheral plasma membr 100.0 6.1E-36 2.1E-40 335.8 16.4 238 725-968 23-286 (351)
116 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 3.2E-36 1.1E-40 349.7 14.6 250 723-979 181-444 (452)
117 1opk_A P150, C-ABL, proto-onco 100.0 5.9E-36 2E-40 351.2 16.8 245 725-975 219-478 (495)
118 1ogq_A PGIP-2, polygalacturona 100.0 5.5E-36 1.9E-40 330.4 15.3 255 394-650 51-309 (313)
119 1qpc_A LCK kinase; alpha beta 100.0 7.1E-36 2.4E-40 324.4 15.8 249 723-978 10-272 (279)
120 3lxp_A Non-receptor tyrosine-p 100.0 1.1E-35 3.8E-40 329.3 17.7 246 728-979 33-314 (318)
121 3kfa_A Tyrosine-protein kinase 100.0 4.2E-36 1.5E-40 327.8 14.0 248 723-976 10-272 (288)
122 3lzb_A Epidermal growth factor 100.0 5.7E-36 2E-40 332.7 15.2 248 725-977 14-280 (327)
123 2i1m_A Macrophage colony-stimu 100.0 7.6E-36 2.6E-40 333.1 16.0 254 722-979 42-330 (333)
124 4fvq_A Tyrosine-protein kinase 100.0 3E-36 1E-40 329.2 12.3 241 725-975 7-275 (289)
125 4dc2_A Protein kinase C IOTA t 100.0 1.1E-35 3.6E-40 336.8 17.2 232 725-963 51-307 (396)
126 3f66_A Hepatocyte growth facto 100.0 1.4E-35 4.6E-40 325.5 17.4 251 725-979 24-295 (298)
127 3o0g_A Cell division protein k 100.0 2.4E-35 8.2E-40 322.5 19.2 236 726-968 2-282 (292)
128 2bdw_A Hypothetical protein K1 100.0 1.5E-35 5.1E-40 333.6 17.9 238 724-969 27-285 (362)
129 2x4f_A Myosin light chain kina 100.0 9.9E-36 3.4E-40 336.4 16.4 233 729-968 92-342 (373)
130 4euu_A Serine/threonine-protei 100.0 3.2E-35 1.1E-39 325.9 20.1 243 725-974 8-308 (319)
131 3gxj_A TGF-beta receptor type- 100.0 1.9E-36 6.6E-41 333.0 10.1 247 725-978 2-300 (303)
132 1p4o_A Insulin-like growth fac 100.0 2.2E-36 7.4E-41 335.9 10.6 254 718-975 17-299 (322)
133 1xjd_A Protein kinase C, theta 100.0 5.9E-36 2E-40 333.7 13.7 238 723-967 14-268 (345)
134 3h4j_B AMPK kdaid, SNF1-like p 100.0 4.2E-36 1.4E-40 333.7 12.3 236 725-969 8-259 (336)
135 1fot_A TPK1 delta, CAMP-depend 100.0 2.2E-35 7.4E-40 325.9 17.9 234 725-968 5-258 (318)
136 2zv2_A Calcium/calmodulin-depe 100.0 2E-35 6.9E-40 324.1 17.5 236 725-968 12-292 (298)
137 3kmu_A ILK, integrin-linked ki 100.0 2.1E-35 7.2E-40 319.1 17.3 239 725-975 9-270 (271)
138 3c1x_A Hepatocyte growth facto 100.0 7E-36 2.4E-40 337.4 14.0 249 727-979 90-359 (373)
139 4f0f_A Serine/threonine-protei 100.0 1.7E-35 5.7E-40 322.9 16.6 238 725-973 18-287 (287)
140 1u59_A Tyrosine-protein kinase 100.0 3.7E-35 1.3E-39 320.1 19.2 247 726-977 9-274 (287)
141 3brb_A Proto-oncogene tyrosine 100.0 2.5E-35 8.7E-40 325.8 18.0 252 723-978 31-311 (313)
142 3o6n_A APL1; leucine-rich repe 100.0 4.3E-35 1.5E-39 334.5 20.5 336 264-649 43-378 (390)
143 1mqb_A Ephrin type-A receptor 100.0 2.9E-35 9.8E-40 328.1 18.6 249 726-978 44-312 (333)
144 3dtc_A Mitogen-activated prote 100.0 1.7E-35 5.9E-40 319.9 16.2 238 725-973 6-271 (271)
145 3op5_A Serine/threonine-protei 100.0 1.4E-35 4.8E-40 335.0 16.2 251 724-979 33-333 (364)
146 3v8s_A RHO-associated protein 100.0 8.8E-36 3E-40 339.4 14.5 244 719-969 62-330 (410)
147 3mdy_A Bone morphogenetic prot 100.0 6.4E-35 2.2E-39 326.2 21.2 252 721-979 32-335 (337)
148 2vd5_A DMPK protein; serine/th 100.0 8.4E-36 2.9E-40 339.8 14.2 245 718-968 53-327 (412)
149 3a8x_A Protein kinase C IOTA t 100.0 1.3E-35 4.4E-40 331.6 15.4 232 725-963 8-264 (345)
150 4fr4_A YANK1, serine/threonine 100.0 2.1E-35 7.1E-40 333.3 17.2 235 725-967 14-270 (384)
151 3cc6_A Protein tyrosine kinase 100.0 3.1E-35 1.1E-39 319.7 17.5 247 724-976 10-274 (281)
152 3a62_A Ribosomal protein S6 ki 100.0 2.6E-35 8.8E-40 327.4 17.2 237 725-968 16-276 (327)
153 3pls_A Macrophage-stimulating 100.0 3.1E-35 1.1E-39 322.6 17.4 249 727-979 22-291 (298)
154 1rdq_E PKA C-alpha, CAMP-depen 100.0 2.8E-35 9.6E-40 329.4 17.3 234 725-968 40-293 (350)
155 2pmi_A Negative RE, cyclin-dep 100.0 2.8E-35 9.7E-40 325.8 17.0 237 725-968 4-293 (317)
156 2ozo_A Tyrosine-protein kinase 100.0 3.8E-35 1.3E-39 352.5 19.2 251 727-982 336-605 (613)
157 3g2f_A Bone morphogenetic prot 100.0 2.3E-35 8E-40 329.6 15.5 246 725-980 12-323 (336)
158 3oja_B Anopheles plasmodium-re 100.0 6.2E-35 2.1E-39 351.6 20.4 335 265-649 50-384 (597)
159 3e7e_A HBUB1, BUB1A, mitotic c 100.0 5.4E-35 1.8E-39 330.4 18.3 247 724-977 63-341 (365)
160 2i0e_A Protein kinase C-beta I 100.0 2.6E-35 9E-40 329.6 15.3 238 724-968 18-276 (353)
161 2w4o_A Calcium/calmodulin-depe 100.0 2.7E-35 9.2E-40 330.2 15.3 235 724-968 51-305 (349)
162 3dbq_A Dual specificity protei 100.0 1.7E-35 5.8E-40 331.5 13.7 238 725-969 8-274 (343)
163 3gni_B Strad alpha; kinase fol 100.0 4.8E-35 1.6E-39 333.9 17.6 242 724-969 23-334 (389)
164 4hgt_A Casein kinase I isoform 100.0 6.7E-35 2.3E-39 319.6 18.0 251 723-980 6-285 (296)
165 3uc3_A Serine/threonine-protei 100.0 3.5E-35 1.2E-39 330.6 16.1 236 725-969 19-275 (361)
166 4agu_A Cyclin-dependent kinase 100.0 1.1E-34 3.7E-39 320.4 19.7 236 726-968 3-284 (311)
167 3f3z_A Calcium/calmodulin-depe 100.0 7.1E-35 2.4E-39 316.2 17.8 235 725-968 8-261 (277)
168 3uzp_A CKI-delta, CKID, casein 100.0 1.1E-34 3.8E-39 317.9 19.5 251 724-981 7-286 (296)
169 3hko_A Calcium/calmodulin-depe 100.0 5.7E-35 2E-39 327.7 17.5 257 722-984 22-344 (345)
170 2yfx_A Tyrosine-protein kinase 100.0 3.5E-35 1.2E-39 326.8 15.4 249 725-977 29-306 (327)
171 2y94_A 5'-AMP-activated protei 100.0 5.5E-35 1.9E-39 338.8 17.5 236 725-968 15-266 (476)
172 1b6c_B TGF-B superfamily recep 100.0 2.2E-34 7.7E-39 322.5 21.9 256 717-979 33-340 (342)
173 3ork_A Serine/threonine protei 100.0 2.5E-35 8.4E-40 325.5 13.8 246 725-975 11-281 (311)
174 4fmz_A Internalin; leucine ric 100.0 6.7E-34 2.3E-38 319.3 25.7 307 262-622 40-346 (347)
175 2a19_B Interferon-induced, dou 100.0 4E-35 1.4E-39 319.3 15.2 246 724-980 9-279 (284)
176 2a2a_A Death-associated protei 100.0 1.1E-34 3.8E-39 321.8 19.0 236 725-968 11-272 (321)
177 2h8h_A Proto-oncogene tyrosine 100.0 2.5E-35 8.4E-40 349.1 14.6 250 721-977 262-525 (535)
178 2wqm_A Serine/threonine-protei 100.0 7.4E-35 2.5E-39 321.6 17.4 249 725-979 31-301 (310)
179 3fdn_A Serine/threonine-protei 100.0 4.5E-35 1.5E-39 318.1 15.3 237 724-969 7-258 (279)
180 3kk8_A Calcium/calmodulin depe 100.0 1.2E-34 4.2E-39 315.5 18.8 237 725-969 5-262 (284)
181 3cok_A Serine/threonine-protei 100.0 3E-35 1E-39 319.3 13.6 238 725-968 10-262 (278)
182 3llt_A Serine/threonine kinase 100.0 6.4E-35 2.2E-39 329.4 16.6 245 713-968 22-355 (360)
183 4eut_A Serine/threonine-protei 100.0 6.7E-35 2.3E-39 333.1 16.9 245 725-976 8-310 (396)
184 3kn6_A Ribosomal protein S6 ki 100.0 4.6E-35 1.6E-39 325.0 15.0 228 731-968 16-270 (325)
185 2eue_A Carbon catabolite derep 100.0 6.6E-35 2.3E-39 316.0 15.9 234 726-968 13-262 (275)
186 3g33_A Cell division protein k 100.0 1.5E-34 5.3E-39 318.7 19.0 237 724-968 7-296 (308)
187 3dls_A PAS domain-containing s 100.0 2.2E-35 7.5E-40 328.9 12.3 238 724-969 22-275 (335)
188 1xbb_A Tyrosine-protein kinase 100.0 1.5E-34 5.1E-39 316.1 18.6 247 725-977 15-281 (291)
189 2yex_A Serine/threonine-protei 100.0 8.4E-35 2.9E-39 315.4 16.4 240 724-968 5-261 (276)
190 3is5_A Calcium-dependent prote 100.0 1.3E-34 4.4E-39 315.4 17.8 236 725-968 21-278 (285)
191 1u5q_A Serine/threonine protei 100.0 5.5E-35 1.9E-39 327.2 15.2 233 726-969 54-306 (348)
192 2zmd_A Dual specificity protei 100.0 5.2E-35 1.8E-39 332.8 14.9 238 725-969 55-321 (390)
193 2r5t_A Serine/threonine-protei 100.0 2.6E-35 8.9E-40 332.0 12.3 239 725-970 37-291 (373)
194 1byg_A CSK, protein (C-termina 100.0 6.1E-35 2.1E-39 316.9 14.7 240 725-976 20-274 (278)
195 1fvr_A Tyrosine-protein kinase 100.0 1.1E-34 3.6E-39 322.9 16.7 246 726-978 25-303 (327)
196 4ejn_A RAC-alpha serine/threon 100.0 3.3E-35 1.1E-39 341.2 13.0 237 725-968 147-404 (446)
197 3oz6_A Mitogen-activated prote 100.0 1.1E-34 3.9E-39 330.5 17.2 239 724-969 7-329 (388)
198 2buj_A Serine/threonine-protei 100.0 3.3E-35 1.1E-39 325.5 12.3 251 724-978 27-309 (317)
199 2ac3_A MAP kinase-interacting 100.0 1.1E-34 3.9E-39 321.1 16.3 239 725-968 11-295 (316)
200 3ttj_A Mitogen-activated prote 100.0 1.2E-34 4E-39 336.8 17.2 234 725-969 61-356 (464)
201 2qr7_A Ribosomal protein S6 ki 100.0 6.6E-35 2.3E-39 325.5 14.5 235 724-969 20-278 (342)
202 2h34_A Serine/threonine-protei 100.0 6.1E-35 2.1E-39 321.9 14.1 248 724-977 32-298 (309)
203 4fmz_A Internalin; leucine ric 100.0 2.7E-33 9.3E-38 314.4 27.6 304 168-501 42-345 (347)
204 1x8b_A WEE1HU, WEE1-like prote 100.0 1.7E-34 5.8E-39 315.0 17.2 235 724-968 9-279 (289)
205 3rp9_A Mitogen-activated prote 100.0 1.4E-34 4.7E-39 337.5 17.5 194 725-924 52-279 (458)
206 2acx_A G protein-coupled recep 100.0 9.8E-35 3.4E-39 340.8 16.1 237 725-968 183-444 (576)
207 3mtl_A Cell division protein k 100.0 4.9E-35 1.7E-39 324.9 12.8 236 726-968 2-281 (324)
208 1ua2_A CAK, cell division prot 100.0 1.4E-34 4.8E-39 324.4 16.3 240 723-969 7-292 (346)
209 1u46_A ACK-1, activated CDC42 100.0 1E-34 3.6E-39 317.3 14.8 247 725-976 17-285 (291)
210 3bhy_A Death-associated protei 100.0 3.9E-34 1.3E-38 311.3 19.3 244 725-976 4-275 (283)
211 2v62_A Serine/threonine-protei 100.0 4.5E-35 1.5E-39 328.3 12.1 245 725-975 36-328 (345)
212 1nxk_A MAP kinase-activated pr 100.0 1.3E-34 4.5E-39 330.4 15.6 232 726-969 61-322 (400)
213 2jii_A Serine/threonine-protei 100.0 8E-35 2.7E-39 327.3 13.6 246 725-980 41-341 (352)
214 3gbz_A Kinase, CMGC CDK; ssgci 100.0 6.4E-35 2.2E-39 324.7 12.6 239 722-968 30-318 (329)
215 3n9x_A Phosphotransferase; mal 100.0 1.9E-34 6.6E-39 332.9 16.8 195 725-925 25-248 (432)
216 3pg1_A Mitogen-activated prote 100.0 2E-34 6.8E-39 325.6 16.4 245 716-968 12-316 (362)
217 4fl3_A Tyrosine-protein kinase 100.0 2.3E-34 7.9E-39 346.4 17.8 240 732-977 375-633 (635)
218 2rku_A Serine/threonine-protei 100.0 2.6E-34 9E-39 314.6 16.3 238 725-969 14-266 (294)
219 3sv0_A Casein kinase I-like; t 100.0 6.2E-34 2.1E-38 330.6 20.2 246 725-977 6-280 (483)
220 3mi9_A Cell division protein k 100.0 3.8E-34 1.3E-38 321.8 17.9 240 725-969 16-312 (351)
221 2j7t_A Serine/threonine-protei 100.0 7.9E-35 2.7E-39 320.1 12.0 239 724-968 17-275 (302)
222 3ll6_A Cyclin G-associated kin 100.0 2.5E-34 8.7E-39 321.2 16.2 250 724-978 26-311 (337)
223 2y7j_A Phosphorylase B kinase 100.0 9.1E-34 3.1E-38 319.8 20.7 242 719-968 87-359 (365)
224 2owb_A Serine/threonine-protei 100.0 2.7E-34 9.2E-39 320.6 16.2 238 725-969 40-292 (335)
225 2jam_A Calcium/calmodulin-depe 100.0 3.4E-34 1.2E-38 315.3 16.8 235 725-968 8-261 (304)
226 3com_A Serine/threonine-protei 100.0 2.7E-34 9.3E-39 317.7 16.0 237 724-968 27-278 (314)
227 2vgo_A Serine/threonine-protei 100.0 3.9E-34 1.3E-38 311.6 16.8 235 725-968 13-262 (284)
228 4aaa_A Cyclin-dependent kinase 100.0 1.9E-34 6.5E-39 321.4 14.6 238 725-969 24-307 (331)
229 2clq_A Mitogen-activated prote 100.0 7.7E-34 2.6E-38 311.0 19.1 237 726-968 22-278 (295)
230 3i6u_A CDS1, serine/threonine- 100.0 2.2E-34 7.5E-39 330.9 15.4 236 724-968 133-399 (419)
231 3a7i_A MST3 kinase, serine/thr 100.0 5.6E-34 1.9E-38 313.5 18.0 238 725-970 21-272 (303)
232 3eqc_A Dual specificity mitoge 100.0 1.7E-34 5.9E-39 325.8 14.1 236 725-969 32-325 (360)
233 3c4z_A Rhodopsin kinase; Ser/T 100.0 3.1E-34 1.1E-38 336.0 16.5 233 725-963 184-438 (543)
234 3byv_A Rhoptry kinase; malaria 100.0 2.8E-35 9.6E-40 334.1 7.2 242 725-977 72-370 (377)
235 3lm5_A Serine/threonine-protei 100.0 3.9E-34 1.3E-38 318.1 15.3 244 719-969 21-288 (327)
236 3mwu_A Calmodulin-domain prote 100.0 7.3E-34 2.5E-38 333.6 18.5 237 724-969 20-277 (486)
237 2h6d_A 5'-AMP-activated protei 100.0 6.3E-34 2.1E-38 308.5 16.5 237 725-969 10-262 (276)
238 2wtk_C Serine/threonine-protei 100.0 1.5E-33 5.1E-38 310.4 19.3 240 725-969 4-264 (305)
239 1cm8_A Phosphorylated MAP kina 100.0 8.3E-34 2.8E-38 320.2 17.7 232 725-968 24-307 (367)
240 2w5a_A Serine/threonine-protei 100.0 2.5E-34 8.6E-39 312.2 12.4 244 725-974 5-273 (279)
241 3q5i_A Protein kinase; CDPK, m 100.0 1.3E-33 4.3E-38 333.0 19.3 237 724-969 34-302 (504)
242 3lij_A Calcium/calmodulin depe 100.0 9.3E-34 3.2E-38 333.3 17.7 236 725-969 36-292 (494)
243 2j0j_A Focal adhesion kinase 1 100.0 1.1E-33 3.7E-38 341.9 18.6 247 724-976 388-652 (656)
244 2xrw_A Mitogen-activated prote 100.0 1.4E-33 4.7E-38 319.3 18.2 234 725-969 24-319 (371)
245 1vzo_A Ribosomal protein S6 ki 100.0 2.6E-34 8.8E-39 323.1 11.9 239 725-969 53-322 (355)
246 2x7f_A TRAF2 and NCK-interacti 100.0 3.2E-34 1.1E-38 318.9 12.5 246 716-968 14-286 (326)
247 1t4h_A Serine/threonine-protei 100.0 1.6E-33 5.4E-38 307.8 17.3 233 726-968 26-282 (290)
248 3nyv_A Calmodulin-domain prote 100.0 5.4E-34 1.9E-38 334.9 14.5 235 725-968 25-281 (484)
249 1phk_A Phosphorylase kinase; g 100.0 1.7E-33 5.7E-38 308.9 17.4 237 724-968 15-283 (298)
250 3kvw_A DYRK2, dual specificity 100.0 2.8E-33 9.6E-38 322.5 20.1 233 725-968 96-408 (429)
251 3eb0_A Putative uncharacterize 100.0 1.3E-33 4.4E-38 321.2 17.0 235 722-968 3-321 (383)
252 1zy4_A Serine/threonine-protei 100.0 8.4E-34 2.9E-38 311.9 15.0 240 724-968 4-283 (303)
253 3qyz_A Mitogen-activated prote 100.0 2.4E-33 8.3E-38 316.7 19.0 237 725-968 26-313 (364)
254 3nsz_A CK II alpha, casein kin 100.0 2.7E-33 9.1E-38 312.1 19.1 230 725-968 35-319 (330)
255 2r3i_A Cell division protein k 100.0 1.1E-33 3.7E-38 310.5 15.7 236 726-968 3-283 (299)
256 3pfq_A PKC-B, PKC-beta, protei 100.0 9.5E-34 3.2E-38 343.4 16.5 233 724-963 339-587 (674)
257 2vx3_A Dual specificity tyrosi 100.0 3.9E-33 1.3E-37 317.1 20.2 198 724-930 52-259 (382)
258 2pml_X PFPK7, Ser/Thr protein 100.0 5.9E-34 2E-38 319.9 13.1 235 725-968 30-322 (348)
259 2ycf_A Serine/threonine-protei 100.0 1.2E-33 4.2E-38 313.6 15.2 236 724-968 8-274 (322)
260 3q60_A ROP5B; pseudokinase, tr 100.0 2.7E-34 9.1E-39 325.5 10.0 244 725-978 61-364 (371)
261 2vwi_A Serine/threonine-protei 100.0 1.9E-34 6.3E-39 317.2 7.7 242 723-968 12-287 (303)
262 2y4i_B KSR2, HKSR2, kinase sup 100.0 2.3E-34 7.9E-39 319.0 8.2 251 722-979 29-306 (319)
263 2i6l_A Mitogen-activated prote 100.0 2.5E-33 8.5E-38 310.7 16.4 237 725-968 10-305 (320)
264 3cek_A Dual specificity protei 100.0 9.5E-34 3.3E-38 313.1 12.0 247 716-969 18-293 (313)
265 3fme_A Dual specificity mitoge 100.0 1.8E-33 6.1E-38 307.3 14.0 236 725-968 6-266 (290)
266 2fst_X Mitogen-activated prote 100.0 1.4E-33 4.8E-38 318.0 13.5 233 725-969 28-312 (367)
267 2ft3_A Biglycan; proteoglycan, 100.0 2.3E-32 7.9E-37 304.6 23.2 288 195-524 34-331 (332)
268 1z7x_W Ribonuclease inhibitor; 100.0 7.3E-36 2.5E-40 349.2 -5.6 361 194-599 3-412 (461)
269 4exu_A Mitogen-activated prote 100.0 4.5E-33 1.6E-37 315.1 17.5 232 725-969 41-324 (371)
270 2b9h_A MAP kinase FUS3, mitoge 100.0 4.1E-33 1.4E-37 313.7 16.8 237 725-968 10-305 (353)
271 1z57_A Dual specificity protei 100.0 7E-33 2.4E-37 309.7 18.4 234 725-969 13-329 (339)
272 3an0_A Dual specificity mitoge 100.0 2E-33 6.9E-38 314.4 13.9 237 724-968 49-310 (340)
273 3e3p_A Protein kinase, putativ 100.0 8.1E-33 2.8E-37 312.2 19.0 244 719-969 16-315 (360)
274 1wak_A Serine/threonine-protei 100.0 2.7E-33 9.1E-38 320.6 15.0 233 725-968 36-391 (397)
275 4e7w_A Glycogen synthase kinas 100.0 4.2E-33 1.4E-37 317.7 16.4 234 725-969 39-322 (394)
276 1blx_A Cyclin-dependent kinase 100.0 8.2E-33 2.8E-37 307.5 17.5 237 724-968 9-296 (326)
277 1j1b_A Glycogen synthase kinas 100.0 7.2E-33 2.5E-37 318.3 16.5 232 725-968 53-336 (420)
278 2wei_A Calmodulin-domain prote 100.0 8.4E-33 2.9E-37 301.5 15.9 237 723-968 19-276 (287)
279 2ft3_A Biglycan; proteoglycan, 100.0 7.5E-32 2.6E-36 300.4 23.6 295 170-500 33-331 (332)
280 3rgf_A Cyclin-dependent kinase 100.0 4.9E-33 1.7E-37 318.9 14.2 237 726-969 20-334 (405)
281 1xku_A Decorin; proteoglycan, 100.0 8.7E-32 3E-36 299.7 23.9 290 170-524 31-330 (330)
282 1z7x_W Ribonuclease inhibitor; 100.0 1.4E-35 4.7E-40 346.8 -7.5 390 146-557 4-447 (461)
283 1xku_A Decorin; proteoglycan, 100.0 2E-31 6.8E-36 296.8 26.5 253 168-452 74-330 (330)
284 3a99_A Proto-oncogene serine/t 100.0 2.4E-33 8.2E-38 310.8 10.2 237 723-968 40-293 (320)
285 2iwi_A Serine/threonine-protei 100.0 4.4E-33 1.5E-37 307.7 11.9 238 722-968 27-283 (312)
286 2eu9_A Dual specificity protei 100.0 2.7E-32 9.3E-37 307.1 18.5 233 725-968 18-333 (355)
287 3coi_A Mitogen-activated prote 100.0 1.9E-32 6.5E-37 308.1 16.8 231 725-968 23-305 (353)
288 3fhr_A MAP kinase-activated pr 100.0 9.9E-33 3.4E-37 307.8 14.2 231 725-968 27-287 (336)
289 3p23_A Serine/threonine-protei 100.0 1.2E-32 4.3E-37 316.7 15.0 237 724-968 22-283 (432)
290 1q8y_A SR protein kinase; tran 100.0 1.2E-32 4.2E-37 312.3 14.1 233 725-968 18-333 (373)
291 2rio_A Serine/threonine-protei 100.0 2.8E-32 9.7E-37 314.8 16.3 234 727-968 16-295 (434)
292 3aln_A Dual specificity mitoge 100.0 1.8E-32 6.1E-37 304.9 13.7 236 725-968 21-285 (327)
293 2dyl_A Dual specificity mitoge 100.0 5.3E-32 1.8E-36 299.8 14.5 236 725-968 24-283 (318)
294 2pzi_A Probable serine/threoni 100.0 6.4E-32 2.2E-36 329.8 16.2 236 725-975 79-328 (681)
295 3qa8_A MGC80376 protein; kinas 100.0 2.4E-32 8.4E-37 323.2 10.8 243 725-974 13-308 (676)
296 2vuw_A Serine/threonine-protei 100.0 3.3E-32 1.1E-36 303.9 9.7 224 725-967 19-329 (336)
297 3uqc_A Probable conserved tran 100.0 3.8E-31 1.3E-35 287.5 15.3 216 725-977 30-267 (286)
298 2z80_A TOLL-like receptor 2, v 100.0 4.3E-31 1.5E-35 297.0 15.9 287 54-383 23-316 (353)
299 3ogk_B Coronatine-insensitive 100.0 4.9E-33 1.7E-37 336.0 -1.6 212 59-276 40-280 (592)
300 3ogk_B Coronatine-insensitive 100.0 4E-32 1.4E-36 328.0 3.7 434 160-620 63-549 (592)
301 2z80_A TOLL-like receptor 2, v 100.0 2.4E-30 8.2E-35 290.9 17.2 275 343-627 35-319 (353)
302 3m2w_A MAP kinase-activated pr 100.0 2.3E-30 7.8E-35 283.9 16.4 212 725-969 16-257 (299)
303 3dzo_A Rhoptry kinase domain; 100.0 2.1E-31 7.2E-36 305.4 8.0 233 725-968 77-363 (413)
304 4fcg_A Uncharacterized protein 100.0 7E-32 2.4E-36 299.3 3.5 278 44-354 26-316 (328)
305 1wwl_A Monocyte differentiatio 100.0 5.1E-31 1.8E-35 290.7 7.7 265 54-353 24-310 (312)
306 1wwl_A Monocyte differentiatio 100.0 3.4E-31 1.2E-35 292.1 5.5 252 93-382 39-310 (312)
307 2z66_A Variable lymphocyte rec 100.0 1.6E-29 5.4E-34 278.3 15.6 251 371-626 10-265 (306)
308 3zyi_A Leucine-rich repeat-con 100.0 5.2E-29 1.8E-33 289.8 20.2 251 370-626 56-307 (452)
309 3zyj_A Leucine-rich repeat-con 100.0 6.3E-29 2.1E-33 288.0 19.8 251 370-626 45-296 (440)
310 2z66_A Variable lymphocyte rec 100.0 4.7E-29 1.6E-33 274.5 16.1 278 318-627 10-292 (306)
311 3g06_A SSPH2 (leucine-rich rep 100.0 3.5E-29 1.2E-33 298.4 16.0 282 53-385 14-301 (622)
312 1ozn_A Reticulon 4 receptor; N 100.0 8.9E-29 3E-33 269.3 17.2 252 371-627 14-266 (285)
313 1ozn_A Reticulon 4 receptor; N 100.0 3.2E-28 1.1E-32 264.8 19.4 267 342-618 14-283 (285)
314 3oja_A Leucine-rich immune mol 100.0 5E-30 1.7E-34 300.0 5.4 234 369-617 35-270 (487)
315 3zyj_A Leucine-rich repeat-con 99.9 3.9E-27 1.3E-31 272.9 23.1 247 172-478 45-292 (440)
316 3zyi_A Leucine-rich repeat-con 99.9 3.2E-27 1.1E-31 274.6 22.4 247 172-478 56-303 (452)
317 3o53_A Protein LRIM1, AGAP0063 99.9 9E-29 3.1E-33 273.4 6.4 236 193-449 33-270 (317)
318 2o6q_A Variable lymphocyte rec 99.9 2.9E-27 9.8E-32 255.0 16.8 218 58-305 2-219 (270)
319 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-28 4.9E-33 271.7 6.6 181 441-628 99-282 (317)
320 3g06_A SSPH2 (leucine-rich rep 99.9 1.7E-26 5.8E-31 275.3 23.7 268 170-512 40-307 (622)
321 2p1m_B Transport inhibitor res 99.9 1.5E-29 5E-34 305.8 -4.9 438 160-623 56-545 (594)
322 3oja_A Leucine-rich immune mol 99.9 3.4E-27 1.2E-31 276.0 12.3 237 95-347 32-270 (487)
323 2z62_A TOLL-like receptor 4, v 99.9 2.1E-26 7.2E-31 249.2 15.6 210 418-628 29-243 (276)
324 4azs_A Methyltransferase WBDD; 99.9 6.6E-27 2.3E-31 277.2 10.3 181 734-925 242-434 (569)
325 2p1m_B Transport inhibitor res 99.9 1.4E-28 4.9E-33 297.1 -6.7 395 95-500 103-542 (594)
326 2z62_A TOLL-like receptor 4, v 99.9 2.1E-25 7.2E-30 241.3 15.5 225 373-602 12-241 (276)
327 2o6q_A Variable lymphocyte rec 99.9 6.3E-25 2.1E-29 236.6 17.7 185 442-626 38-222 (270)
328 3rfs_A Internalin B, repeat mo 99.9 3.2E-25 1.1E-29 239.1 12.5 222 394-628 20-241 (272)
329 1p9a_G Platelet glycoprotein I 99.9 2.7E-24 9.2E-29 233.8 16.3 206 413-625 6-211 (290)
330 3rfs_A Internalin B, repeat mo 99.9 2.2E-24 7.4E-29 232.6 14.7 209 119-340 39-247 (272)
331 3m19_A Variable lymphocyte rec 99.9 3.2E-24 1.1E-28 228.4 15.7 192 59-281 3-194 (251)
332 3en9_A Glycoprotease, O-sialog 99.9 7.5E-25 2.6E-29 258.2 9.5 169 728-911 338-521 (540)
333 3goz_A Leucine-rich repeat-con 99.9 4.9E-25 1.7E-29 248.3 6.3 258 77-354 2-299 (362)
334 2ast_B S-phase kinase-associat 99.9 1E-25 3.4E-30 251.4 0.0 212 58-276 34-257 (336)
335 1p9a_G Platelet glycoprotein I 99.9 9E-24 3.1E-28 229.6 15.4 208 436-649 5-212 (290)
336 3goz_A Leucine-rich repeat-con 99.9 6E-25 2E-29 247.5 5.6 266 102-388 3-304 (362)
337 2xwt_C Thyrotropin receptor; s 99.9 9.8E-24 3.4E-28 222.9 12.5 196 418-619 32-236 (239)
338 4glp_A Monocyte differentiatio 99.9 5.1E-24 1.8E-28 234.5 9.6 203 416-623 90-308 (310)
339 2ast_B S-phase kinase-associat 99.9 1.1E-23 3.9E-28 234.8 12.0 255 148-415 50-315 (336)
340 4glp_A Monocyte differentiatio 99.9 1.5E-23 5E-28 230.8 12.0 202 169-381 90-307 (310)
341 2xwt_C Thyrotropin receptor; s 99.9 2.4E-23 8.3E-28 219.9 12.6 197 394-596 32-237 (239)
342 2ca6_A RAN GTPase-activating p 99.9 9.6E-25 3.3E-29 248.3 1.7 244 88-353 23-317 (386)
343 3m19_A Variable lymphocyte rec 99.9 6.2E-23 2.1E-27 218.4 14.7 180 418-624 15-194 (251)
344 2ca6_A RAN GTPase-activating p 99.9 2.4E-24 8.2E-29 245.1 3.1 235 73-307 32-319 (386)
345 1h6u_A Internalin H; cell adhe 99.9 4.8E-23 1.7E-27 226.1 12.4 210 397-624 23-232 (308)
346 3cvr_A Invasion plasmid antige 99.9 3.7E-23 1.3E-27 243.4 10.5 204 54-313 36-252 (571)
347 1h6u_A Internalin H; cell adhe 99.9 2.2E-22 7.4E-27 220.9 14.8 190 394-599 42-231 (308)
348 4ay9_X Follicle-stimulating ho 99.9 8.5E-22 2.9E-26 220.6 15.0 243 61-347 9-254 (350)
349 4ay9_X Follicle-stimulating ho 99.9 7.7E-22 2.6E-26 220.9 14.5 200 371-575 12-216 (350)
350 1zar_A RIO2 kinase; serine kin 99.9 1.1E-21 3.7E-26 211.8 12.6 151 719-900 83-251 (282)
351 2o6s_A Variable lymphocyte rec 99.8 5E-21 1.7E-25 197.4 14.1 186 59-316 5-190 (208)
352 4b8c_D Glucose-repressible alc 99.8 1.4E-22 4.9E-27 247.5 2.4 219 27-283 129-358 (727)
353 3cvr_A Invasion plasmid antige 99.8 2.2E-21 7.6E-26 228.3 12.3 189 122-340 60-255 (571)
354 2o6s_A Variable lymphocyte rec 99.8 6.5E-21 2.2E-25 196.6 13.0 158 418-582 29-186 (208)
355 3e6j_A Variable lymphocyte rec 99.8 2.2E-20 7.5E-25 195.5 14.8 161 54-255 12-172 (229)
356 1dce_A Protein (RAB geranylger 99.8 4.2E-22 1.4E-26 235.9 0.5 235 62-321 286-566 (567)
357 2v70_A SLIT-2, SLIT homolog 2 99.8 9.5E-21 3.2E-25 196.8 8.0 135 492-626 35-170 (220)
358 2xot_A Amphoterin-induced prot 99.8 2.8E-20 9.5E-25 209.1 11.4 176 420-598 21-202 (361)
359 1h6t_A Internalin B; cell adhe 99.8 4.1E-20 1.4E-24 200.9 10.4 172 414-623 43-214 (291)
360 2v9t_B SLIT homolog 2 protein 99.8 3E-20 1E-24 193.1 8.7 152 444-598 14-165 (220)
361 1h6t_A Internalin B; cell adhe 99.8 9.2E-20 3.1E-24 198.1 12.8 190 441-645 24-213 (291)
362 1m9s_A Internalin B; cell inva 99.8 1.7E-19 5.8E-24 214.8 15.1 191 147-355 23-213 (605)
363 2xot_A Amphoterin-induced prot 99.8 2.1E-19 7E-24 202.0 13.0 177 396-575 21-203 (361)
364 2v70_A SLIT-2, SLIT homolog 2 99.8 2.1E-19 7.3E-24 186.6 11.9 155 445-602 15-170 (220)
365 2v9t_B SLIT homolog 2 protein 99.8 2.6E-19 8.8E-24 186.0 12.4 155 468-625 14-168 (220)
366 1m9s_A Internalin B; cell inva 99.8 1.8E-19 6.2E-24 214.5 12.4 200 395-610 23-222 (605)
367 3e6j_A Variable lymphocyte rec 99.8 5.1E-19 1.7E-23 185.1 12.8 156 443-626 21-176 (229)
368 1dce_A Protein (RAB geranylger 99.8 6.7E-21 2.3E-25 225.6 -4.6 190 415-627 347-551 (567)
369 1xeu_A Internalin C; cellular 99.8 8E-19 2.7E-23 187.6 10.0 172 439-625 17-188 (263)
370 1zth_A RIO1 serine protein kin 99.8 6.8E-19 2.3E-23 187.6 9.3 139 725-876 46-219 (258)
371 1xeu_A Internalin C; cellular 99.8 1.1E-18 3.7E-23 186.6 10.8 168 394-576 20-187 (263)
372 4b8c_D Glucose-repressible alc 99.8 1E-19 3.4E-24 222.4 3.0 197 97-325 173-369 (727)
373 4ezg_A Putative uncharacterize 99.7 3.7E-18 1.3E-22 174.1 11.9 130 168-304 64-194 (197)
374 3sb4_A Hypothetical leucine ri 99.7 2.9E-18 9.8E-23 190.1 10.3 221 290-543 100-327 (329)
375 4ezg_A Putative uncharacterize 99.7 9.9E-18 3.4E-22 170.9 12.5 131 167-304 41-172 (197)
376 1w8a_A SLIT protein; signaling 99.7 2.5E-18 8.4E-23 174.5 5.6 132 468-602 11-143 (192)
377 3sb4_A Hypothetical leucine ri 99.7 5.8E-18 2E-22 187.6 8.6 15 290-304 48-62 (329)
378 1w8a_A SLIT protein; signaling 99.7 2.9E-17 1E-21 166.5 11.8 132 444-578 11-143 (192)
379 2ell_A Acidic leucine-rich nuc 99.7 2.3E-16 8E-21 156.2 11.0 134 465-624 24-162 (168)
380 2ell_A Acidic leucine-rich nuc 99.6 4E-16 1.4E-20 154.6 11.8 132 170-304 24-160 (168)
381 2je0_A Acidic leucine-rich nuc 99.6 3.4E-16 1.2E-20 151.6 9.0 128 465-618 17-149 (149)
382 4gyi_A RIO2 kinase; protein ki 99.6 6.3E-16 2.2E-20 170.4 12.0 143 720-876 89-265 (397)
383 2je0_A Acidic leucine-rich nuc 99.6 6.7E-16 2.3E-20 149.6 10.6 129 169-299 16-148 (149)
384 2wfh_A SLIT homolog 2 protein 99.6 2.1E-16 7.2E-21 160.2 6.0 110 515-625 33-142 (193)
385 4fdw_A Leucine rich hypothetic 99.6 3.3E-15 1.1E-19 169.1 16.4 220 394-622 158-383 (401)
386 2wfh_A SLIT homolog 2 protein 99.6 2.2E-15 7.5E-20 152.7 12.5 125 174-303 14-138 (193)
387 2o6r_A Variable lymphocyte rec 99.6 8.1E-16 2.8E-20 153.8 9.1 133 467-626 9-141 (177)
388 4fdw_A Leucine rich hypothetic 99.6 1.1E-14 3.7E-19 164.8 17.8 265 266-574 113-383 (401)
389 1ds9_A Outer arm dynein; leuci 99.6 7.3E-17 2.5E-21 164.6 -0.4 138 93-260 14-158 (198)
390 2o6r_A Variable lymphocyte rec 99.6 5.2E-15 1.8E-19 147.8 12.5 109 195-304 29-137 (177)
391 1ds9_A Outer arm dynein; leuci 99.6 1.4E-16 4.8E-21 162.5 -0.8 155 438-623 15-186 (198)
392 4fs7_A Uncharacterized protein 99.5 6.9E-14 2.4E-18 158.9 18.9 68 230-300 59-126 (394)
393 1a9n_A U2A', U2A'; complex (nu 99.5 4.7E-15 1.6E-19 148.0 7.2 106 514-623 43-154 (176)
394 4fs7_A Uncharacterized protein 99.5 2.3E-13 8E-18 154.5 21.6 310 188-545 65-374 (394)
395 1a9n_A U2A', U2A'; complex (nu 99.5 1.7E-14 5.7E-19 144.0 8.5 132 438-574 16-153 (176)
396 3g39_A Variable lymphocyte rec 99.5 6E-14 2E-18 138.9 8.3 90 537-626 30-119 (170)
397 3g39_A Variable lymphocyte rec 99.4 3.3E-13 1.1E-17 133.6 10.7 105 172-279 11-115 (170)
398 2r9u_A Variable lymphocyte rec 99.4 1.7E-13 5.9E-18 136.0 8.6 90 537-626 33-122 (174)
399 2r9u_A Variable lymphocyte rec 99.4 5.8E-13 2E-17 132.3 10.7 104 173-279 15-118 (174)
400 4gt6_A Cell surface protein; l 99.3 2.5E-11 8.7E-16 137.7 20.9 110 187-300 56-169 (394)
401 3un9_A NLR family member X1; l 99.3 4.6E-14 1.6E-18 158.1 -3.8 165 416-600 71-254 (372)
402 3un9_A NLR family member X1; l 99.3 9.5E-14 3.3E-18 155.5 -1.6 92 218-309 155-257 (372)
403 4gt6_A Cell surface protein; l 99.3 1.5E-10 5.3E-15 131.2 23.0 335 160-574 53-391 (394)
404 2ifg_A High affinity nerve gro 99.3 5.9E-12 2E-16 140.4 9.2 103 174-279 12-116 (347)
405 2ifg_A High affinity nerve gro 99.2 1E-11 3.6E-16 138.3 8.1 104 493-599 12-117 (347)
406 3tm0_A Aminoglycoside 3'-phosp 99.2 3.1E-11 1.1E-15 128.7 11.1 147 722-875 10-213 (263)
407 1nd4_A Aminoglycoside 3'-phosp 99.1 1.4E-10 4.8E-15 123.4 10.2 137 727-875 21-214 (264)
408 4h09_A Hypothetical leucine ri 99.0 1.2E-08 4.2E-13 114.9 21.7 83 212-300 40-122 (379)
409 4h09_A Hypothetical leucine ri 99.0 1.1E-08 3.7E-13 115.3 21.1 83 189-276 41-123 (379)
410 3rw6_A Nuclear RNA export fact 99.0 1.1E-11 3.8E-16 130.1 -3.8 50 59-110 76-129 (267)
411 2ra8_A Uncharacterized protein 99.0 1.8E-10 6.1E-15 127.8 3.8 202 72-302 106-341 (362)
412 2ra8_A Uncharacterized protein 98.9 5.7E-10 1.9E-14 123.7 5.9 158 457-620 164-341 (362)
413 3dxp_A Putative acyl-COA dehyd 98.9 3.8E-09 1.3E-13 118.0 11.1 141 731-875 43-248 (359)
414 3rw6_A Nuclear RNA export fact 98.6 8.7E-09 3E-13 108.1 0.5 105 190-297 137-257 (267)
415 3r70_A Aminoglycoside phosphot 98.5 4.7E-07 1.6E-11 99.1 13.2 136 727-875 38-237 (320)
416 3sg8_A APH(2'')-ID; antibiotic 98.5 6.6E-07 2.2E-11 97.2 12.0 136 731-875 25-223 (304)
417 3d1u_A Putative fructosamine-3 98.4 2.5E-06 8.4E-11 91.5 15.4 77 729-809 18-97 (288)
418 1io0_A Tropomodulin; LRR prote 98.4 6E-08 2.1E-12 96.9 1.7 66 239-304 90-164 (185)
419 3tdw_A Gentamicin resistance p 98.4 2.6E-06 9E-11 92.4 14.5 136 731-875 24-224 (306)
420 1io0_A Tropomodulin; LRR prote 98.4 1.1E-07 3.8E-12 94.9 2.8 112 168-279 34-164 (185)
421 4gkh_A Aminoglycoside 3'-phosp 98.3 4.2E-06 1.4E-10 89.1 13.9 135 733-875 31-223 (272)
422 3ovc_A Hygromycin-B 4-O-kinase 98.3 5.3E-06 1.8E-10 92.2 13.5 140 730-875 45-243 (362)
423 3ats_A Putative uncharacterize 98.2 2.9E-06 1E-10 94.4 9.5 79 732-810 26-121 (357)
424 2olc_A MTR kinase, methylthior 98.0 2.9E-05 1E-09 87.6 12.2 75 731-807 35-120 (397)
425 2q83_A YTAA protein; 2635576, 97.9 4.1E-05 1.4E-09 84.4 12.1 139 732-875 38-252 (346)
426 3e4g_A ATP synthase subunit S, 97.8 1.9E-05 6.5E-10 76.6 4.9 84 194-277 61-150 (176)
427 3jr1_A Putative fructosamine-3 97.7 0.00025 8.7E-09 76.4 13.0 136 731-871 41-232 (312)
428 3f7w_A Putative fructosamine-3 97.6 0.00034 1.2E-08 74.9 13.1 78 727-808 16-96 (288)
429 3e4g_A ATP synthase subunit S, 97.6 5E-05 1.7E-09 73.7 5.4 84 513-596 61-150 (176)
430 2pyw_A Uncharacterized protein 97.5 0.00044 1.5E-08 78.4 12.3 73 731-806 39-122 (420)
431 2ppq_A HSK, HK, homoserine kin 97.4 0.00074 2.5E-08 73.5 11.7 157 716-875 7-217 (322)
432 3csv_A Aminoglycoside phosphot 97.3 0.0008 2.7E-08 73.6 11.0 139 732-875 24-217 (333)
433 1zyl_A Hypothetical protein YI 97.2 0.0022 7.4E-08 69.9 12.7 157 715-875 10-223 (328)
434 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00021 7.3E-09 70.6 3.8 86 191-276 38-136 (197)
435 3dxq_A Choline/ethanolamine ki 97.1 0.0015 5.1E-08 70.3 10.2 136 731-875 23-202 (301)
436 3feg_A Choline/ethanolamine ki 97.1 0.002 6.8E-08 71.3 11.0 139 732-875 56-254 (379)
437 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00014 4.9E-09 71.9 1.5 41 463-503 39-84 (197)
438 1nw1_A Choline kinase (49.2 KD 97.0 0.0023 7.9E-08 72.5 10.9 72 732-809 79-159 (429)
439 2qg7_A Ethanolamine kinase PV0 96.7 0.0087 3E-07 68.1 12.4 74 731-809 113-188 (458)
440 3c5i_A Choline kinase; choline 96.6 0.0038 1.3E-07 69.3 9.1 73 732-809 39-121 (369)
441 3rfe_A Platelet glycoprotein I 96.6 0.0013 4.6E-08 60.7 4.0 37 586-622 32-68 (130)
442 3i1a_A Spectinomycin phosphotr 96.5 0.006 2.1E-07 66.7 9.7 66 737-809 34-108 (339)
443 3rfe_A Platelet glycoprotein I 96.2 0.0033 1.1E-07 58.0 4.5 56 541-598 12-68 (130)
444 3f2s_A CK, chetk-alpha, cholin 96.1 0.025 8.6E-07 62.7 11.6 140 732-875 58-280 (401)
445 3mes_A Choline kinase; malaria 95.7 0.026 8.8E-07 63.3 9.5 73 732-809 76-157 (424)
446 2yle_A Protein spire homolog 1 95.2 0.061 2.1E-06 53.3 8.9 143 808-975 34-201 (229)
447 3g15_A CK, chetk-alpha, cholin 91.5 0.58 2E-05 52.1 10.1 29 847-875 246-280 (401)
448 3cxl_A N-chimerin; SH2, RHO-GA 71.3 0.44 1.5E-05 54.1 -2.3 59 731-792 147-214 (463)
449 4ano_A ESSB; membrane protein, 69.5 11 0.00036 37.5 7.5 84 780-873 48-131 (219)
450 4ann_A ESSB; membrane protein, 60.7 12 0.00042 36.8 6.0 83 780-873 43-126 (215)
451 2k1k_A Ephrin type-A receptor 39.9 30 0.001 23.6 3.4 14 683-696 25-38 (38)
452 2ks1_B Epidermal growth factor 39.0 53 0.0018 23.2 4.6 12 687-698 29-40 (44)
453 3ls8_A Phosphatidylinositol 3- 33.5 2.9E+02 0.0098 31.8 12.5 46 822-874 454-501 (614)
454 2lz0_A Uncharacterized protein 31.6 48 0.0016 28.1 4.4 45 405-450 8-52 (100)
455 1cja_A Protein (actin-fragmin 29.5 1.9E+02 0.0063 30.5 9.2 135 732-875 75-237 (342)
456 2x6h_A GH13170P, VPS34, phosph 29.4 3.8E+02 0.013 31.3 12.8 45 823-874 529-575 (696)
457 2l2t_A Receptor tyrosine-prote 27.9 69 0.0023 22.6 3.7 12 687-698 28-39 (44)
458 2lz0_A Uncharacterized protein 27.5 1.1E+02 0.0037 25.9 5.9 49 426-475 5-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.2e-89 Score=847.23 Aligned_cols=627 Identities=33% Similarity=0.525 Sum_probs=540.4
Q ss_pred hccCChhHHHHHHHHHHhcccCCCCcccCCCCCCCCcceeeeEEEeCCCCeEEEEEecCCccccc---Cch---------
Q 001988 24 AASNISTDQQALLALKDHITYDPTNLLGTNWTSNASICSWIGIICDVNSHKVTTLNLSSFNLQGT---IPP--------- 91 (985)
Q Consensus 24 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~s~w~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~l~g~---~~~--------- 91 (985)
++...++|++||++||+++. ||. .+++ |+.++|||+|.||+|+ ++||+.|||++++++|. +|+
T Consensus 6 ~~~~~~~~~~all~~k~~~~-~~~-~l~~-W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLP-DKN-LLPD-WSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCS-CTT-SSTT-CCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred cccCCHHHHHHHHHHHhhCC-Ccc-cccC-CCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCccc
Confidence 33445889999999999997 887 7776 9888899999999999 68999999999999987 554
Q ss_pred --------------hcccccccceecccCCcCCCCCCc--ccccCCCCcEEEccCcccCCCCcccc-ccCCccceeeecc
Q 001988 92 --------------EIANLSSLKSLDLSHNKLSSNIPS--SIFTMSTLKVLYLMDNQLSGSLSSFT-FNTSSILDIRLSK 154 (985)
Q Consensus 92 --------------~l~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~~L~~L~ls~ 154 (985)
.++++++|++|||++|.++|.+|. .++++++|++|+|++|.+++.+|..+ .++++|++|++++
T Consensus 81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence 567778888888888888888888 88888888888888888888777665 6788888888888
Q ss_pred ccccCCCChhH--hhhccccceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccC
Q 001988 155 NKLSGKLPENI--CNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHG 232 (985)
Q Consensus 155 n~l~g~lp~~~--~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 232 (985)
|++++..|..+ +.++++|++|++++|.+++.+|. +++++|++|+|++|++++.+|. ++++++|++|++++|++++
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~ 237 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 237 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCS
T ss_pred CccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCC
Confidence 88887777653 46788888888888888876654 7888899999999999887777 8889999999999999998
Q ss_pred CchhhhcCCCCCCEEEecCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCcccc
Q 001988 233 EIPQEIGYLQNLDVLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSIT 312 (985)
Q Consensus 233 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 312 (985)
.+|..++.+++|++|++++|++++.+|.. .+++|++|+|++|++++.+|..++..+++|++|+|++|++++.+|..++
T Consensus 238 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 315 (768)
T 3rgz_A 238 DFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315 (768)
T ss_dssp CHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG
T ss_pred cccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh
Confidence 88999999999999999999888877765 7888888888888888888887765568888888888888888888888
Q ss_pred CCCCccEEEccCcccccccCCc-ccCCCCCceEeccCCcccCCCC-cccc-------------------cccccc--cCc
Q 001988 313 NASKLILLEMGSNSFSGFIPSA-IGNLRNLKLFDIFFNNLTSSTP-ELGF-------------------LSSLAN--CKK 369 (985)
Q Consensus 313 ~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~-~~~~-------------------~~~l~~--l~~ 369 (985)
++++|++|++++|++++.+|.. ++++++|++|++++|++++..+ .+.. +..+.. +++
T Consensus 316 ~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 395 (768)
T 3rgz_A 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395 (768)
T ss_dssp GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCC
T ss_pred cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCC
Confidence 8888888888888888777765 7888888888888888763322 2110 011122 567
Q ss_pred ccEEEecCCCCCccCCCCccchhhcccceeccccccccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecc
Q 001988 370 LRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLA 449 (985)
Q Consensus 370 L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 449 (985)
|++|++++|++++.+|..+..++ +|+.|++++|.+++.+|..+..+++|++|++++|++++.+|..|..+++|++|+++
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred ccEEECCCCccccccCHHHhcCC-CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEec
Confidence 88888888888888888888887 89999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCcccCCc
Q 001988 450 FNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPI 529 (985)
Q Consensus 450 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~ 529 (985)
+|++++.+|..+..+++|++|+|++|++++.+|..++.+++|++|+|++|++++.+|..+.++++|++|++++|++.+.+
T Consensus 475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred ccc----------------------------------------------------------------------ccCCCcc
Q 001988 530 SLA----------------------------------------------------------------------IGNLKAV 539 (985)
Q Consensus 530 ~~~----------------------------------------------------------------------~~~l~~L 539 (985)
|.. ++.+++|
T Consensus 555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L 634 (768)
T 3rgz_A 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634 (768)
T ss_dssp CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence 643 3446789
Q ss_pred cEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCccccccccccccccccc
Q 001988 540 VGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKLSYLKELNLSFN 619 (985)
Q Consensus 540 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N 619 (985)
+.|||++|+++|.+|..|+++++|+.|+|++|+++|.+|..|+++++|++|||++|+++|.+|..+..+++|++||+++|
T Consensus 635 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCcccccccccCCccccCCCCCCCCCCCCCCCCcc
Q 001988 620 KLKGEIPRGGPFANFTAESFMGNELLCGLPNLQVPPCKHSQPRAQ 664 (985)
Q Consensus 620 ~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~~~~~~~~~ 664 (985)
+++|.||.+++|.++...+|.||+++||.|+ ++|.......+
T Consensus 715 ~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l---~~C~~~~~~~~ 756 (768)
T 3rgz_A 715 NLSGPIPEMGQFETFPPAKFLNNPGLCGYPL---PRCDPSNADGY 756 (768)
T ss_dssp EEEEECCSSSSGGGSCGGGGCSCTEEESTTS---CCCCSCC----
T ss_pred cccccCCCchhhccCCHHHhcCCchhcCCCC---cCCCCCccCCC
Confidence 9999999999999999999999999999984 48976655443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.4e-69 Score=672.99 Aligned_cols=540 Identities=34% Similarity=0.498 Sum_probs=436.3
Q ss_pred CeEEEEEecCCcccccCch--hcccccccceecccCCcCCCCCCccc-ccCCCCcEEEccCcccCCCCccc---cccCCc
Q 001988 73 HKVTTLNLSSFNLQGTIPP--EIANLSSLKSLDLSHNKLSSNIPSSI-FTMSTLKVLYLMDNQLSGSLSSF---TFNTSS 146 (985)
Q Consensus 73 ~~v~~l~L~~~~l~g~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~~~~---~~~~~~ 146 (985)
.+++.|||++|+++|.+|. .++++++|++|||++|.+++.+|..+ .++++|++|+|++|++++..+.. +.++++
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~ 179 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179 (768)
T ss_dssp TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTT
T ss_pred CCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCC
Confidence 3688999999999999998 99999999999999999999999876 78899999999999988777665 555555
Q ss_pred cceeeeccccccCCCChhHhhhccccceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccc-------
Q 001988 147 ILDIRLSKNKLSGKLPENICNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTV------- 219 (985)
Q Consensus 147 L~~L~ls~n~l~g~lp~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~------- 219 (985)
|++|++++|.+++.+|. ..+++|++|+|++|.+++.+|. ++++++|++|+|++|++++.+|..++++++
T Consensus 180 L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 180 LKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255 (768)
T ss_dssp CCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred CCEEECCCCcccccCCc---ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence 66666666555554443 3455555555555555544444 555555555555555555555555555444
Q ss_pred ---------------cceEeeccccccCCchhhhcCC-CCCCEEEecCCcCcccCcccccCCCCCCEEEccCCcCcccCC
Q 001988 220 ---------------LQRISLINNKLHGEIPQEIGYL-QNLDVLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLP 283 (985)
Q Consensus 220 ---------------L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 283 (985)
|++|++++|+++|.+|..+..+ ++|++|+|++|++++.+|..+.++++|++|+|++|+++|.+|
T Consensus 256 ~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip 335 (768)
T 3rgz_A 256 SNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335 (768)
T ss_dssp SSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred CCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCC
Confidence 4455555555555666666554 777777777777777777777777777777777777777777
Q ss_pred hhhhhcCCCCcEEEecCccCCCcCCccccCCC-CccEEEccCcccccccCCcccC--CCCCceEeccCCcccCCCCcccc
Q 001988 284 SRIDLALPNLEFLNLGINSFSGTIPSSITNAS-KLILLEMGSNSFSGFIPSAIGN--LRNLKLFDIFFNNLTSSTPELGF 360 (985)
Q Consensus 284 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~--l~~L~~L~L~~N~l~~~~~~~~~ 360 (985)
...+..+++|++|+|++|++++.+|..+.+++ +|+.|++++|++++.+|..+.. +++|++|++++|++++..+
T Consensus 336 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p---- 411 (768)
T 3rgz_A 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP---- 411 (768)
T ss_dssp HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC----
T ss_pred HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC----
Confidence 76556777777777777777777777777766 7777777777777777776666 6777777777777765433
Q ss_pred cccccccCcccEEEecCCCCCccCCCCccchhhcccceeccccccccccCCcCCCCCCccEEEccCCCCCCCCCcccccc
Q 001988 361 LSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGL 440 (985)
Q Consensus 361 ~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 440 (985)
..+.++++|++|++++|++++.+|..+..++ +|+.|++++|.+++.+|..+..+++|++|+|++|++++.+|.+|.++
T Consensus 412 -~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 489 (768)
T 3rgz_A 412 -PTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489 (768)
T ss_dssp -GGGGGCTTCCEEECCSSEEESCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred -HHHhcCCCCCEEECcCCcccCcccHHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence 3578889999999999999999999999887 89999999999999999999999999999999999999999999999
Q ss_pred ccccceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCceEeeccceeeeecCCC------------
Q 001988 441 QKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFVIPST------------ 508 (985)
Q Consensus 441 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~------------ 508 (985)
++|++|+|++|++++.+|..++.+++|++|+|++|++++.+|..+.++++|++|++++|++++.+|..
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999988766643
Q ss_pred ----------------------------------------------------------ccCccceeEEeecCCcccCCcc
Q 001988 509 ----------------------------------------------------------FWNLKDILSFDISSNLLDGPIS 530 (985)
Q Consensus 509 ----------------------------------------------------------~~~l~~L~~L~ls~N~l~~~~~ 530 (985)
|..+++|+.||+++|++++.+|
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip 649 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence 4446789999999999999999
Q ss_pred ccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCcccccccc
Q 001988 531 LAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKLSY 610 (985)
Q Consensus 531 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 610 (985)
..+++++.|+.|+|++|+++|.+|..|+++++|+.|||++|+++|.+|..++++++|++|||++|+++|.+|.. ..+.+
T Consensus 650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~ 728 (768)
T 3rgz_A 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFET 728 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGG
T ss_pred HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999975 45566
Q ss_pred cccccccccc-ccC
Q 001988 611 LKELNLSFNK-LKG 623 (985)
Q Consensus 611 L~~L~ls~N~-l~~ 623 (985)
+....+.+|+ |.|
T Consensus 729 ~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 729 FPPAKFLNNPGLCG 742 (768)
T ss_dssp SCGGGGCSCTEEES
T ss_pred CCHHHhcCCchhcC
Confidence 7777888886 555
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-63 Score=614.57 Aligned_cols=575 Identities=23% Similarity=0.231 Sum_probs=492.4
Q ss_pred CeEEEEEecCCcccccCchhcccccccceecccCCcCCCCCCcccccCCCCcEEEccCcccCCCCccccccCCccceeee
Q 001988 73 HKVTTLNLSSFNLQGTIPPEIANLSSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQLSGSLSSFTFNTSSILDIRL 152 (985)
Q Consensus 73 ~~v~~l~L~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 152 (985)
.+++.|||++|++++..+..+.++++|++|+|++|.+++..|..++++++|++|+|++|++++..+..+.++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 46889999999999877778999999999999999999888889999999999999999999877778889999999999
Q ss_pred ccccccCCCChhHhhhccccceecccCccccccCCcccCCCCCceEEEcccccCCCccccccc--cccccceEeeccccc
Q 001988 153 SKNKLSGKLPENICNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIG--NLTVLQRISLINNKL 230 (985)
Q Consensus 153 s~n~l~g~lp~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N~l 230 (985)
++|++++ +|+..++++++|++|+|++|.+++..|..++++++|++|+|++|.+++..|..++ .+++|++|++++|++
T Consensus 105 ~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 105 MSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CSSCCCC-CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCccCc-cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 9999974 5544457899999999999999988888899999999999999999987777665 458899999999999
Q ss_pred cCCchhhhcCCCCCCEEEecCCcCcccCccccc---CCCCCCEEEccCCcCcccCChhhhhcC--CCCcEEEecCccCCC
Q 001988 231 HGEIPQEIGYLQNLDVLQLGFNNLTGVVPATIF---NMSTLKEIFLYNNSLSGSLPSRIDLAL--PNLEFLNLGINSFSG 305 (985)
Q Consensus 231 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~L~~N~l~~~~p~~~~~~l--~~L~~L~Ls~N~l~~ 305 (985)
++..|..++.+++|+.|++++|.+.+.....+. ..++|++|++++|++++..|..+. .+ ++|+.|+|++|++++
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCCEEECTTSCCCE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccCcCCCCEEECCCCCcCc
Confidence 988888999999999999999887754332221 357899999999999977666543 44 459999999999999
Q ss_pred cCCccccCCCCccEEEccCcccccccCCcccCCCCCceEeccCCcccCCCCccccc----ccccccCcccEEEecCCCCC
Q 001988 306 TIPSSITNASKLILLEMGSNSFSGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFL----SSLANCKKLRYLGLGGNPLD 381 (985)
Q Consensus 306 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~----~~l~~l~~L~~L~L~~N~l~ 381 (985)
..|..++.+++|++|++++|++++..|..++++++|+.|++++|..........+. ..+..+++|++|++++|.+.
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 88999999999999999999999999999999999999999987654321100011 14778999999999999999
Q ss_pred ccCCCCccchhhcccceecccccccc--ccCCcCCCC--CCccEEEccCCCCCCCCCccccccccccceecccccccCCc
Q 001988 382 GFLPSSIGNLSLSLERLNIAFCNISG--NIPKAIGNL--SNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSI 457 (985)
Q Consensus 382 ~~~p~~~~~l~~~L~~L~L~~n~l~~--~~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 457 (985)
+..|..+..++ +|++|++++|.++. ..+..|..+ ++|++|++++|++++..|.+|..+++|+.|++++|.+.+.+
T Consensus 343 ~~~~~~~~~l~-~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 343 GIKSNMFTGLI-NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp CCCTTTTTTCT-TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred CCChhHhcccc-CCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence 98888898887 89999999998543 333445443 58999999999999999999999999999999999998766
Q ss_pred h-hhhhhccCCCeEEccCCccccccCCCCcCcCcCceEeeccceee--eecCCCccCccceeEEeecCCcccCCcccccc
Q 001988 458 P-DEICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFT--FVIPSTFWNLKDILSFDISSNLLDGPISLAIG 534 (985)
Q Consensus 458 p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~ 534 (985)
| ..+..+++|++|++++|++++..+..|..+++|+.|++++|.++ +..|..|.++++|+.|++++|+++++.+..|.
T Consensus 422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 501 (680)
T 1ziw_A 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501 (680)
T ss_dssp CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc
Confidence 5 68899999999999999999999999999999999999999987 46889999999999999999999999999999
Q ss_pred CCCcccEEEccCCccCccCc--------hhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCcccc
Q 001988 535 NLKAVVGIDLSRNNLSGNIP--------TTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVSFE 606 (985)
Q Consensus 535 ~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 606 (985)
.+++|+.|+|++|++++..+ ..|.++++|++|+|++|+++...+..|.++++|+.|||++|+|++..+..|.
T Consensus 502 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 581 (680)
T 1ziw_A 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581 (680)
T ss_dssp TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhC
Confidence 99999999999999986522 2478899999999999999976667799999999999999999987777889
Q ss_pred ccccccccccccccccCCCCCCC--CCcccccccccCCccccCCCC
Q 001988 607 KLSYLKELNLSFNKLKGEIPRGG--PFANFTAESFMGNELLCGLPN 650 (985)
Q Consensus 607 ~l~~L~~L~ls~N~l~~~~p~~~--~~~~~~~~~~~~n~~lc~~~~ 650 (985)
.+++|+.|++++|++++.+|... .+.++....+.+||+.|+++.
T Consensus 582 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 99999999999999999877531 456777888999999999874
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.1e-60 Score=581.80 Aligned_cols=556 Identities=24% Similarity=0.265 Sum_probs=490.7
Q ss_pred EEEecCCcccccCchhcccccccceecccCCcCCCCCCcccccCCCCcEEEccCcccCCCCccccccCCccceeeecccc
Q 001988 77 TLNLSSFNLQGTIPPEIANLSSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQLSGSLSSFTFNTSSILDIRLSKNK 156 (985)
Q Consensus 77 ~l~L~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~ 156 (985)
.+|.++++++ .+|..+. +++++|+|++|.+++..|..|.++++|++|+|++|.+++..|..+.++++|++|+|++|+
T Consensus 8 ~~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 8 VADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EEECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred eeECCCCCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 4677777887 6887665 799999999999998777889999999999999999999999999999999999999999
Q ss_pred ccCCCChhHhhhccccceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchh
Q 001988 157 LSGKLPENICNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQ 236 (985)
Q Consensus 157 l~g~lp~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 236 (985)
++ .+|+..++++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..|..++++++|++|++++|++++..|.
T Consensus 85 l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 85 LS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred cC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence 99 67877668999999999999999977778999999999999999999999999999999999999999999988888
Q ss_pred hhc--CCCCCCEEEecCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhh--hcCCCCcEEEecCccCCCcCCcccc
Q 001988 237 EIG--YLQNLDVLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRID--LALPNLEFLNLGINSFSGTIPSSIT 312 (985)
Q Consensus 237 ~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~ 312 (985)
.++ .+++|++|++++|++++..|..+..+.+|+.|++++|++.+.....+. ...++|+.|++++|++++..|..+.
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 765 568999999999999999999999999999999999998754333221 1358999999999999999999999
Q ss_pred CCCC--ccEEEccCcccccccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCcc-----CC
Q 001988 313 NASK--LILLEMGSNSFSGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGF-----LP 385 (985)
Q Consensus 313 ~l~~--L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~-----~p 385 (985)
++.. |+.|++++|++++..|..++.+++|++|++++|++++..+. .+.++++|++|++++|...+. +|
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~L~~~~~~~~~~~~~lp 318 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH-----SLHGLFNVRYLNLKRSFTKQSISLASLP 318 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT-----TTTTCTTCCEEECTTCBCCC------CC
T ss_pred ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh-----hhcCCCCccEEeccchhhhccccccccc
Confidence 8865 99999999999999999999999999999999999876553 478899999999998866542 23
Q ss_pred C----CccchhhcccceeccccccccccCCcCCCCCCccEEEccCCCCCC--CCCcccccc--ccccceecccccccCCc
Q 001988 386 S----SIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSG--SIPVTFGGL--QKLQGLDLAFNKLAGSI 457 (985)
Q Consensus 386 ~----~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l--~~L~~L~Ls~N~l~~~~ 457 (985)
. .+..++ +|++|++++|.+++..+..|..+++|++|++++|.+.. ..+..|..+ ++|+.|++++|++++..
T Consensus 319 ~i~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~ 397 (680)
T 1ziw_A 319 KIDDFSFQWLK-CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397 (680)
T ss_dssp EECTTTTTTCT-TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEEC
T ss_pred ccChhhcccCC-CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEC
Confidence 2 566666 89999999999999999999999999999999998653 233455544 58999999999999998
Q ss_pred hhhhhhccCCCeEEccCCccccccC-CCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCccc--CCcccccc
Q 001988 458 PDEICLLSRLNELDLNGNKISGSIS-SCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLD--GPISLAIG 534 (985)
Q Consensus 458 p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~--~~~~~~~~ 534 (985)
|..+..+++|+.|+|++|++++.+| ..|.++++|++|++++|++++..+..|..+++|+.|++++|.+. +..|..+.
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence 9999999999999999999987666 68999999999999999999999999999999999999999987 56788999
Q ss_pred CCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchh--------hhhhcccccCeEecCCCcccCCCCcccc
Q 001988 535 NLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIP--------ESFGNMTSLESLDLSNNKISGSIPVSFE 606 (985)
Q Consensus 535 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 606 (985)
++++|+.|+|++|+|++..|..|.++++|++|+|++|++++..+ ..|.++++|++|+|++|+++...+..|.
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~ 557 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc
Confidence 99999999999999999888899999999999999999997532 2388999999999999999965556799
Q ss_pred ccccccccccccccccCCCCCC-CCCcccccccccCC
Q 001988 607 KLSYLKELNLSFNKLKGEIPRG-GPFANFTAESFMGN 642 (985)
Q Consensus 607 ~l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~n 642 (985)
.+++|+.|++++|++++.+|.. ..+.++....+.+|
T Consensus 558 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred cccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCC
Confidence 9999999999999999766543 34456666666666
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.7e-61 Score=579.99 Aligned_cols=511 Identities=18% Similarity=0.258 Sum_probs=291.0
Q ss_pred hhHHHHHHHHHHhcccCCCCccc------CCCCCCCCccee---eeEEEeCCCCeEEEEEecCCcccccCchhccccccc
Q 001988 29 STDQQALLALKDHITYDPTNLLG------TNWTSNASICSW---IGIICDVNSHKVTTLNLSSFNLQGTIPPEIANLSSL 99 (985)
Q Consensus 29 ~~~~~aLl~~k~~~~~~~~~~~~------s~w~~~~~~c~w---~gv~c~~~~~~v~~l~L~~~~l~g~~~~~l~~l~~L 99 (985)
..|++||.+||+++..+++...+ .+|+.+++||.| .||+|+.. +||+.|+|++++++|.+|+++++|++|
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L 107 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTEL 107 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTC
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccc
Confidence 47999999999998644332111 259989999999 99999865 899999999999999999999999999
Q ss_pred ceecccCCcC------CC------CCCcccccCCCCcEEEccCcccCCCCcccccc-CCccceeeeccccccCCCChhHh
Q 001988 100 KSLDLSHNKL------SS------NIPSSIFTMSTLKVLYLMDNQLSGSLSSFTFN-TSSILDIRLSKNKLSGKLPENIC 166 (985)
Q Consensus 100 ~~L~L~~n~l------~~------~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~~~L~~L~ls~n~l~g~lp~~~~ 166 (985)
++|||++|.+ .| .+|... +..|+ +++++|.+.+.++..+.. +..+..+++....+..
T Consensus 108 ~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~------- 177 (636)
T 4eco_A 108 EVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK------- 177 (636)
T ss_dssp CEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC-------
T ss_pred eEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc-------
Confidence 9999999987 33 344443 44555 666666665554443321 1122222222222210
Q ss_pred hhccccceeccc--CccccccCCcccCCCCCceEEEcccccCCCc-----------------cccccc--cccccceEee
Q 001988 167 NHLRYLKHLFLR--ENMFYGKIPSSLSKCKQLQELHLGYNNLSGA-----------------IPKEIG--NLTVLQRISL 225 (985)
Q Consensus 167 ~~l~~L~~L~L~--~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-----------------~p~~~~--~l~~L~~L~L 225 (985)
.....++.+.+. .|+++| +|+.|+++++|++|+|++|+++|. +|+.++ ++++|++|+|
T Consensus 178 ~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L 256 (636)
T 4eco_A 178 SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256 (636)
T ss_dssp CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEe
Confidence 011122223332 456665 666666666666666666666654 555555 5555555555
Q ss_pred ccccccCCchhhhcCCCCCCEEEecCCc-Ccc-cCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccC
Q 001988 226 INNKLHGEIPQEIGYLQNLDVLQLGFNN-LTG-VVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSF 303 (985)
Q Consensus 226 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l 303 (985)
++|++.|.+|+.|+++++|++|++++|+ ++| .+|..++++. -+..+++|++|+|++|++
T Consensus 257 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~-------------------~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA-------------------DAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp ECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHH-------------------HSGGGGTCCEEECCSSCC
T ss_pred cCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhh-------------------ccccCCCCCEEECCCCcC
Confidence 5555555555555555555555555555 555 5555554430 000124455555555555
Q ss_pred CCcCCc--cccCCCCccEEEccCcccccccCCcccCCCCCceEeccCCcccCCCCcccccccccccCc-ccEEEecCCCC
Q 001988 304 SGTIPS--SITNASKLILLEMGSNSFSGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKK-LRYLGLGGNPL 380 (985)
Q Consensus 304 ~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~-L~~L~L~~N~l 380 (985)
+ .+|. .++++++|+.|++++|+++|.+| .++.+++|++|++++|+++.++. .+.++++ |++|++++|++
T Consensus 318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~------~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPA------NFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCT------TSEEECTTCCEEECCSSCC
T ss_pred C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccH------hhhhhcccCcEEEccCCcC
Confidence 4 4454 55555555555555555555555 55555555555555555542221 1333444 44444444444
Q ss_pred CccCCCCccchhhcccceeccccccccccCCcCCCCCCccEEEccCCCCCCCCCcccc-------ccccccceecccccc
Q 001988 381 DGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFG-------GLQKLQGLDLAFNKL 453 (985)
Q Consensus 381 ~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~Ls~N~l 453 (985)
+ .+|..+... .+++|++|++++|++++..|..|. .+++|++|+|++|++
T Consensus 390 ~-~lp~~~~~~-----------------------~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l 445 (636)
T 4eco_A 390 K-YIPNIFDAK-----------------------SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445 (636)
T ss_dssp S-SCCSCCCTT-----------------------CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC
T ss_pred c-ccchhhhhc-----------------------ccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc
Confidence 4 233222211 122555555555555555555555 555666666666666
Q ss_pred cCCchhhhhhccCCCeEEccCCccccccCCCCcCc-------CcCceEeeccceeeeecCCCcc--CccceeEEeecCCc
Q 001988 454 AGSIPDEICLLSRLNELDLNGNKISGSISSCLGNL-------TSLQYLNLGSNRFTFVIPSTFW--NLKDILSFDISSNL 524 (985)
Q Consensus 454 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-------~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~ls~N~ 524 (985)
++..+..+..+++|++|+|++|+++...+..+... ++|++|+|++|+++ .+|..+. .+++|+.|++++|+
T Consensus 446 ~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~ 524 (636)
T 4eco_A 446 SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS 524 (636)
T ss_dssp CSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC
T ss_pred CcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC
Confidence 63333334446666666666666663222223222 25555555555555 2333333 44444444444444
Q ss_pred ccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCcc
Q 001988 525 LDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVS 604 (985)
Q Consensus 525 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 604 (985)
+++ +|..+..+++|+.|+|++|+ ++++|++.+.+|..+.++++|++|+|++|+| +.+|..
T Consensus 525 l~~-ip~~~~~l~~L~~L~Ls~N~------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 525 FSK-FPTQPLNSSTLKGFGIRNQR------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK 584 (636)
T ss_dssp CSS-CCCGGGGCSSCCEEECCSCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred CCC-cChhhhcCCCCCEEECCCCc------------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence 444 33344444444444443333 2356667777777777777777777777777 466666
Q ss_pred ccccccccccccccccccCCC
Q 001988 605 FEKLSYLKELNLSFNKLKGEI 625 (985)
Q Consensus 605 ~~~l~~L~~L~ls~N~l~~~~ 625 (985)
+. ++|+.||+++|++...-
T Consensus 585 ~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 585 IT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CC--TTCCEEECCSCTTCEEE
T ss_pred Hh--CcCCEEECcCCCCcccc
Confidence 55 67777788877776433
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.5e-59 Score=567.86 Aligned_cols=534 Identities=21% Similarity=0.236 Sum_probs=462.4
Q ss_pred EEEecCCcccccCchhcccccccceecccCCcCCCCCCcccccCCCCcEEEccCcccCCCCccccccCCccceeeecccc
Q 001988 77 TLNLSSFNLQGTIPPEIANLSSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQLSGSLSSFTFNTSSILDIRLSKNK 156 (985)
Q Consensus 77 ~l~L~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~ 156 (985)
.+|.++.+++ .+|..+.. .+++|||++|.+++..|..|+++++|++|+|++|++++..|..+..+++|++|++++|+
T Consensus 16 ~~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEECCCCCcc-cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 3455666666 67776653 78999999999998888899999999999999999999889999999999999999999
Q ss_pred ccCCCChhHhhhccccceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchh
Q 001988 157 LSGKLPENICNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQ 236 (985)
Q Consensus 157 l~g~lp~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 236 (985)
+++..|..+ +++++|++|+|++|.+++..|..++++++|++|+|++|++++..+..+..+++|++|++++|++++..|.
T Consensus 93 l~~~~~~~~-~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 93 LIFMAETAL-SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CSEECTTTT-SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred ccccChhhh-cccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence 997666655 7899999999999999977788899999999999999999975544555599999999999999988899
Q ss_pred hhcCCCCCC--EEEecCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCc-----CCc
Q 001988 237 EIGYLQNLD--VLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGT-----IPS 309 (985)
Q Consensus 237 ~~~~l~~L~--~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~-----~p~ 309 (985)
.|+.+++|+ .|++++|++++..|..+.. .+|++|++++|.. ++. .+..+.++....+..+.+.+. .+.
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~-~~~~l~~~~l~~l~~~~~~~~~~~~i~~~ 246 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLV-IFKGLKNSTIQSLWLGTFEDMDDEDISPA 246 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHH-HHHHTTTCEEEEEECCCCTTSCCCCCCGG
T ss_pred hhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchh---HHH-HhhhccccchhheechhhccccccccChh
Confidence 999999999 8999999999877776554 6899999999872 222 233556666555554443321 122
Q ss_pred cccCCC--CccEEEccCcccccccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCC
Q 001988 310 SITNAS--KLILLEMGSNSFSGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSS 387 (985)
Q Consensus 310 ~~~~l~--~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~ 387 (985)
.+..+. +|+.|++++|.+++..+..|+.+++|++|++++|+++.++. .+.++++|++|++++|++.+..|..
T Consensus 247 ~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~------~l~~l~~L~~L~l~~n~l~~~~~~~ 320 (606)
T 3t6q_A 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS------GLVGLSTLKKLVLSANKFENLCQIS 320 (606)
T ss_dssp GGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS------SCCSCTTCCEEECTTCCCSBGGGGC
T ss_pred HhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCCh------hhcccccCCEEECccCCcCcCchhh
Confidence 333332 78999999999999888889999999999999999987654 3678899999999999999888888
Q ss_pred ccchhhcccceeccccccccccCC-cCCCCCCccEEEccCCCCCCCC--CccccccccccceecccccccCCchhhhhhc
Q 001988 388 IGNLSLSLERLNIAFCNISGNIPK-AIGNLSNLIVLSLGGNNLSGSI--PVTFGGLQKLQGLDLAFNKLAGSIPDEICLL 464 (985)
Q Consensus 388 ~~~l~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 464 (985)
+..++ +|++|++++|.+.+.+|. .+..+++|++|++++|++++.. +..+.++++|++|++++|++.+..|..+..+
T Consensus 321 ~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 399 (606)
T 3t6q_A 321 ASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399 (606)
T ss_dssp GGGCT-TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC
T ss_pred hhccC-cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC
Confidence 88887 899999999999866654 5899999999999999998776 7889999999999999999998889999999
Q ss_pred cCCCeEEccCCccccccCC-CCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCcccCC---ccccccCCCccc
Q 001988 465 SRLNELDLNGNKISGSISS-CLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGP---ISLAIGNLKAVV 540 (985)
Q Consensus 465 ~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~---~~~~~~~l~~L~ 540 (985)
++|++|++++|++++..+. .+.++++|++|++++|.+++..|..|..+++|++|++++|++.+. .+..+..+++|+
T Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~ 479 (606)
T 3t6q_A 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479 (606)
T ss_dssp TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC
T ss_pred ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCcc
Confidence 9999999999999987665 489999999999999999999999999999999999999999872 335789999999
Q ss_pred EEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCcccccccccccccccccc
Q 001988 541 GIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKLSYLKELNLSFNK 620 (985)
Q Consensus 541 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~ 620 (985)
.|++++|++++..|..|+.+++|++|+|++|++++..|..|.++++| .|+|++|++++.+|..+..+++|+.|++++|+
T Consensus 480 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred EEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred ccCCCCC
Q 001988 621 LKGEIPR 627 (985)
Q Consensus 621 l~~~~p~ 627 (985)
+++.++.
T Consensus 559 ~~c~c~~ 565 (606)
T 3t6q_A 559 LDCTCSN 565 (606)
T ss_dssp EECSGGG
T ss_pred ccccCCc
Confidence 9988774
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.6e-58 Score=560.74 Aligned_cols=529 Identities=21% Similarity=0.225 Sum_probs=456.7
Q ss_pred EEEecCCcccccCchhcccccccceecccCCcCCCCCCcccccCCCCcEEEccCcccCCCCccccccCCccceeeecccc
Q 001988 77 TLNLSSFNLQGTIPPEIANLSSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQLSGSLSSFTFNTSSILDIRLSKNK 156 (985)
Q Consensus 77 ~l~L~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~ 156 (985)
.++.++++++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..+..+++|++|+|++|+
T Consensus 15 ~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 15 TYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 5677788887 6777665 789999999999998777789999999999999999998888888899999999999999
Q ss_pred ccCCCChhHhhhccccceecccCccccccCCcccCCCCCceEEEcccccCCC-ccccccccccccceEeeccccccCCch
Q 001988 157 LSGKLPENICNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSG-AIPKEIGNLTVLQRISLINNKLHGEIP 235 (985)
Q Consensus 157 l~g~lp~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p 235 (985)
+++..|..+ +++++|++|+|++|.+++..|..++++++|++|+|++|.+++ .+|..|+++++|++|++++|++++..|
T Consensus 92 l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 92 IQSFSPGSF-SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCCCCTTSS-TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred ccccChhhc-CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 986666665 789999999999999987777889999999999999999986 578999999999999999999998888
Q ss_pred hhhcCCCCCC----EEEecCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCc-----
Q 001988 236 QEIGYLQNLD----VLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGT----- 306 (985)
Q Consensus 236 ~~~~~l~~L~----~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~----- 306 (985)
..|+.+++|+ +|++++|++++..+..+... +|++|++++|.+++......+..+++|+.+++..+.+.+.
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred hhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc
Confidence 8888777665 89999999997666655544 8999999999987555555567889999999877665532
Q ss_pred ----CCccccCCCCccEEEc-cCcccccccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCC
Q 001988 307 ----IPSSITNASKLILLEM-GSNSFSGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLD 381 (985)
Q Consensus 307 ----~p~~~~~l~~L~~L~L-~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~ 381 (985)
.+..+..+ .++.+++ ..|.+.+.+|. +..+++|+.|++++|.+...+ .+..+++|++|++++|.+
T Consensus 250 ~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-------~l~~~~~L~~L~l~~n~l- 319 (606)
T 3vq2_A 250 FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE-------DVPKHFKWQSLSIIRCQL- 319 (606)
T ss_dssp CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC-------CCCTTCCCSEEEEESCCC-
T ss_pred cChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccchhhh-------hccccccCCEEEcccccC-
Confidence 12222222 5667777 78889988888 999999999999999998765 367889999999999999
Q ss_pred ccCCCCccchhhcccceeccccccccccCCcCCCCCCccEEEccCCCCCCC--CCccccccccccceecccccccCCchh
Q 001988 382 GFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGS--IPVTFGGLQKLQGLDLAFNKLAGSIPD 459 (985)
Q Consensus 382 ~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 459 (985)
+.+|. + .++ +|+.|++++|...+.. .+..+++|++|++++|++++. .|..+..+++|++|++++|.+++ +|.
T Consensus 320 ~~lp~-~-~l~-~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~ 393 (606)
T 3vq2_A 320 KQFPT-L-DLP-FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSA 393 (606)
T ss_dssp SSCCC-C-CCS-SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECC
T ss_pred ccccc-C-CCC-ccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chh
Confidence 67784 4 666 8999999999665444 678999999999999999876 37889999999999999999985 668
Q ss_pred hhhhccCCCeEEccCCccccccC-CCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCcccC-CccccccCCC
Q 001988 460 EICLLSRLNELDLNGNKISGSIS-SCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDG-PISLAIGNLK 537 (985)
Q Consensus 460 ~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~-~~~~~~~~l~ 537 (985)
.+..+++|+.|++++|++++..| ..+.++++|++|++++|++++..|..|.++++|++|++++|++.+ ..|..+..++
T Consensus 394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 473 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473 (606)
T ss_dssp CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC
Confidence 88999999999999999998877 689999999999999999999999999999999999999999998 5788899999
Q ss_pred cccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCccccccc-ccccccc
Q 001988 538 AVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKLS-YLKELNL 616 (985)
Q Consensus 538 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~l 616 (985)
+|+.|+|++|++++..|..|+++++|++|+|++|++++.+|..|.++++|++|||++|+|+ .+|..+..++ +|++|++
T Consensus 474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l 552 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNL 552 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEEC
T ss_pred CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEc
Confidence 9999999999999999999999999999999999999988999999999999999999999 6777799997 5999999
Q ss_pred ccccccCCCCC
Q 001988 617 SFNKLKGEIPR 627 (985)
Q Consensus 617 s~N~l~~~~p~ 627 (985)
++|++.+.++.
T Consensus 553 ~~N~~~c~c~~ 563 (606)
T 3vq2_A 553 TNNSVACICEH 563 (606)
T ss_dssp CSCCCCCSSTT
T ss_pred cCCCcccCCcc
Confidence 99999988774
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.8e-58 Score=555.23 Aligned_cols=527 Identities=20% Similarity=0.186 Sum_probs=461.7
Q ss_pred eeeEEEeCC---------CCeEEEEEecCCcccccCchhcccccccceecccCCcCCCCCCcccccCCCCcEEEccCccc
Q 001988 63 WIGIICDVN---------SHKVTTLNLSSFNLQGTIPPEIANLSSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQL 133 (985)
Q Consensus 63 w~gv~c~~~---------~~~v~~l~L~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 133 (985)
+.-|.|... ...++.|||++|++++..|..++++++|++|+|++|.+++..|..|.++++|++|+|++|++
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 445778642 24689999999999988888999999999999999999998899999999999999999999
Q ss_pred CCCCccccccCCccceeeeccccccCCCChhHhhhccccceecccCccccccCCcccCCCCCceEEEcccccCCCccccc
Q 001988 134 SGSLSSFTFNTSSILDIRLSKNKLSGKLPENICNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKE 213 (985)
Q Consensus 134 ~~~~~~~~~~~~~L~~L~ls~n~l~g~lp~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 213 (985)
++..|..+..+++|++|++++|++++..|.. ++++++|++|+|++|.+++..++.+..+++|++|+|++|++++..|..
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIP-LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSC-CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred cccChhhhcccccccEeeccccCcccCCcch-hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh
Confidence 9999999999999999999999999643444 488999999999999999754455556999999999999999888899
Q ss_pred cccccccc--eEeeccccccCCchhhhcCCCCCCEEEecCCcCcccCcccccCCCCCCEEEccCCcCcc----cCChhhh
Q 001988 214 IGNLTVLQ--RISLINNKLHGEIPQEIGYLQNLDVLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSG----SLPSRID 287 (985)
Q Consensus 214 ~~~l~~L~--~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~----~~p~~~~ 287 (985)
++.+++|+ .|++++|++++..|..+.. .+|+.|++++|. .++..+..+..++...+.-+.+.+ .++...+
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~ 248 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGG
T ss_pred hhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccccccccChhHh
Confidence 99999999 8999999999877777665 689999999997 345556666655544443333221 3334444
Q ss_pred hcCC--CCcEEEecCccCCCcCCccccCCCCccEEEccCcccccccCCcccCCCCCceEeccCCcccCCCCccccccccc
Q 001988 288 LALP--NLEFLNLGINSFSGTIPSSITNASKLILLEMGSNSFSGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLA 365 (985)
Q Consensus 288 ~~l~--~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~ 365 (985)
..+. +|+.|++++|++++..+..|.++++|++|++++|+++ .+|..++++++|++|++++|+++...+. .+.
T Consensus 249 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~-----~~~ 322 (606)
T 3t6q_A 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQI-----SAS 322 (606)
T ss_dssp GGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGG-----CGG
T ss_pred chhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchh-----hhh
Confidence 3443 7999999999999888888999999999999999998 6788899999999999999999876542 478
Q ss_pred ccCcccEEEecCCCCCccCCCC-ccchhhcccceecccccccccc--CCcCCCCCCccEEEccCCCCCCCCCcccccccc
Q 001988 366 NCKKLRYLGLGGNPLDGFLPSS-IGNLSLSLERLNIAFCNISGNI--PKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQK 442 (985)
Q Consensus 366 ~l~~L~~L~L~~N~l~~~~p~~-~~~l~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 442 (985)
++++|++|++++|.+.+.+|.. +..++ +|++|++++|.+++.. +..+..+++|++|++++|++.+..|..|..+++
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 401 (606)
T 3t6q_A 323 NFPSLTHLSIKGNTKRLELGTGCLENLE-NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401 (606)
T ss_dssp GCTTCSEEECCSCSSCCBCCSSTTTTCT-TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT
T ss_pred ccCcCCEEECCCCCcccccchhhhhccC-cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc
Confidence 8999999999999998777665 77776 8999999999999876 888999999999999999999999999999999
Q ss_pred ccceecccccccCCchhh-hhhccCCCeEEccCCccccccCCCCcCcCcCceEeeccceeeee---cCCCccCccceeEE
Q 001988 443 LQGLDLAFNKLAGSIPDE-ICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFV---IPSTFWNLKDILSF 518 (985)
Q Consensus 443 L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~p~~~~~l~~L~~L 518 (985)
|+.|++++|++.+..|.. +..+++|++|++++|++++..|..+..+++|++|++++|++++. .+..|..+++|+.|
T Consensus 402 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L 481 (606)
T 3t6q_A 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481 (606)
T ss_dssp CSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEE
T ss_pred CCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEE
Confidence 999999999999876654 88999999999999999999999999999999999999999862 33678999999999
Q ss_pred eecCCcccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCccc
Q 001988 519 DISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKIS 598 (985)
Q Consensus 519 ~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 598 (985)
++++|++++..|..|..+++|+.|+|++|++++..|..|..+++| +|+|++|++++.+|..+..+++|+.|+|++|+++
T Consensus 482 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred ECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999998
Q ss_pred CCCC
Q 001988 599 GSIP 602 (985)
Q Consensus 599 ~~~p 602 (985)
+..+
T Consensus 561 c~c~ 564 (606)
T 3t6q_A 561 CTCS 564 (606)
T ss_dssp CSGG
T ss_pred ccCC
Confidence 7544
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2e-57 Score=569.63 Aligned_cols=510 Identities=20% Similarity=0.199 Sum_probs=328.5
Q ss_pred cccceecccCCcCCCCCCcccccCCCCcEEEccCcccCCCC-ccccccCCccceeeeccccccCCCChhHhhhcccccee
Q 001988 97 SSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQLSGSL-SSFTFNTSSILDIRLSKNKLSGKLPENICNHLRYLKHL 175 (985)
Q Consensus 97 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~~~L~~L~ls~n~l~g~lp~~~~~~l~~L~~L 175 (985)
++|++|||++|.+++..|..|.++++|++|+|++|...+.+ |..+.++++|++|+|++|.+++..|..+ +++++|++|
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF-QGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS-CSCSSCCCE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc-cCCcccCEe
Confidence 44555555555555444445555555555555555443333 3444445555555555555543333333 445555555
Q ss_pred cccCccccccCCcc--cCCCCCceEEEcccccCCCccc-cccccccccceEeeccccccCCchhhhcCC--CCCCEEEec
Q 001988 176 FLRENMFYGKIPSS--LSKCKQLQELHLGYNNLSGAIP-KEIGNLTVLQRISLINNKLHGEIPQEIGYL--QNLDVLQLG 250 (985)
Q Consensus 176 ~L~~n~l~~~~p~~--l~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l--~~L~~L~Ls 250 (985)
+|++|.+++.+|.. |+++++|++|+|++|.+++..| ..|+++++|++|+|++|++++..|..++.+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 55555555444443 5555555555555555554433 345555555555555555555555555544 455555555
Q ss_pred CCcCcccCcccccCCCC------CCEEEccCCcCcccCChhhhhc--CCCCcEEEec---------CccCCCcCCccccC
Q 001988 251 FNNLTGVVPATIFNMST------LKEIFLYNNSLSGSLPSRIDLA--LPNLEFLNLG---------INSFSGTIPSSITN 313 (985)
Q Consensus 251 ~N~l~~~~p~~l~~l~~------L~~L~L~~N~l~~~~p~~~~~~--l~~L~~L~Ls---------~N~l~~~~p~~~~~ 313 (985)
.|.+++..|..+..+.+ |++|++++|.+++.+|..+... .++++.|.++ .|.+.+..+..+..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 55555555544444333 5555555555555444443322 2345555544 23333333444444
Q ss_pred C--CCccEEEccCcccccccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccch
Q 001988 314 A--SKLILLEMGSNSFSGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNL 391 (985)
Q Consensus 314 l--~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l 391 (985)
+ ++|+.|++++|.+.+..|..++.+++|+.|++++|+++...+. .+..+++|++|++++|++++..|..+..+
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 337 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE-----AFYGLDNLQVLNLSYNLLGELYSSNFYGL 337 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT-----TTTTCSSCCEEEEESCCCSCCCSCSCSSC
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH-----HhcCCCCCCEEECCCCCCCccCHHHhcCC
Confidence 3 5677777777777777777777777777777777777665443 35667777777777777777777777777
Q ss_pred hhcccceeccccccccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEE
Q 001988 392 SLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELD 471 (985)
Q Consensus 392 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 471 (985)
+ +|+.|++++|.+++..+..|..+++|++|+|++|.+++.. .+++|+.|++++|+++ .+|.. ..+++.|+
T Consensus 338 ~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ 407 (844)
T 3j0a_A 338 P-KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIH 407 (844)
T ss_dssp T-TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEE
T ss_pred C-CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc-----CCCCcchhccCCCCcc-ccccc---ccccceee
Confidence 6 6778888888777777777788888888888888877432 2677888888888887 44432 45677888
Q ss_pred ccCCccccccC-CCCcCcCcCceEeeccceeeeecCC-CccCccceeEEeecCCccc-----CCccccccCCCcccEEEc
Q 001988 472 LNGNKISGSIS-SCLGNLTSLQYLNLGSNRFTFVIPS-TFWNLKDILSFDISSNLLD-----GPISLAIGNLKAVVGIDL 544 (985)
Q Consensus 472 L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~ls~N~l~-----~~~~~~~~~l~~L~~L~L 544 (985)
+++|++++... ..+.++++|++|+|++|++++..+. .+..+++|+.|++++|.++ +..+..|.++++|+.|+|
T Consensus 408 ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~L 487 (844)
T 3j0a_A 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487 (844)
T ss_dssp CCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCC
T ss_pred cccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEEC
Confidence 88888875322 1245777888888888888765443 4556778888888888876 344456888889999999
Q ss_pred cCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCccccccccccccccccccccCC
Q 001988 545 SRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKLSYLKELNLSFNKLKGE 624 (985)
Q Consensus 545 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 624 (985)
++|+|++..|..|.++++|+.|+|++|+|++..|..+. ++|+.|||++|+|++.+|..|. +|+.|++++|++.+.
T Consensus 488 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICE 562 (844)
T ss_dssp CHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCS
T ss_pred CCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccc
Confidence 99999988888888999999999999999887776665 7899999999999988887764 678889999999887
Q ss_pred CCC
Q 001988 625 IPR 627 (985)
Q Consensus 625 ~p~ 627 (985)
++-
T Consensus 563 c~~ 565 (844)
T 3j0a_A 563 CEL 565 (844)
T ss_dssp SSC
T ss_pred ccc
Confidence 764
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.8e-58 Score=564.21 Aligned_cols=505 Identities=20% Similarity=0.265 Sum_probs=351.3
Q ss_pred ChhHHHHHHHHHHhcccCCCCcccCCCCCCC-----Cc--cee------------eeEEEeCCCCeEEEEEecCCccccc
Q 001988 28 ISTDQQALLALKDHITYDPTNLLGTNWTSNA-----SI--CSW------------IGIICDVNSHKVTTLNLSSFNLQGT 88 (985)
Q Consensus 28 ~~~~~~aLl~~k~~~~~~~~~~~~s~w~~~~-----~~--c~w------------~gv~c~~~~~~v~~l~L~~~~l~g~ 88 (985)
..+|++||++||+++. +| + |+.+. +| |.| .||+|+. ++||+.|+|++++++|.
T Consensus 267 ~~~d~~ALl~~k~~l~-~~-----~-W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ 338 (876)
T 4ecn_A 267 YIKDYKALKAIWEALD-GK-----N-WRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGR 338 (876)
T ss_dssp HHHHHHHHHHHHHHTT-GG-----G-CCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEE
T ss_pred chHHHHHHHHHHHHcC-CC-----C-CCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCc
Confidence 3579999999999995 65 2 65433 55 999 9999987 68999999999999999
Q ss_pred Cchhcccccccceecc-cCCcCCCCCCcccccC----CC-----CcEEEc-------cCcccC-----------CCCccc
Q 001988 89 IPPEIANLSSLKSLDL-SHNKLSSNIPSSIFTM----ST-----LKVLYL-------MDNQLS-----------GSLSSF 140 (985)
Q Consensus 89 ~~~~l~~l~~L~~L~L-~~n~l~~~~p~~~~~l----~~-----L~~L~L-------s~n~l~-----------~~~~~~ 140 (985)
+|+++++|++|++||| ++|.++|..|-..... .. ++..++ ....+. ...+..
T Consensus 339 ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~ 418 (876)
T 4ecn_A 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418 (876)
T ss_dssp ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence 9999999999999999 8999988755332111 00 000000 000000 001111
Q ss_pred cccCCccceeeecc--ccccCCCChhHhhhccccceecccCccccc-----------------cCCcccC--CCCCceEE
Q 001988 141 TFNTSSILDIRLSK--NKLSGKLPENICNHLRYLKHLFLRENMFYG-----------------KIPSSLS--KCKQLQEL 199 (985)
Q Consensus 141 ~~~~~~L~~L~ls~--n~l~g~lp~~~~~~l~~L~~L~L~~n~l~~-----------------~~p~~l~--~l~~L~~L 199 (985)
......++.+.++. |+++| +|..+ +++++|++|+|++|.++| .+|+.++ ++++|++|
T Consensus 419 ~~~~l~l~~l~l~~~~N~L~~-IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L 496 (876)
T 4ecn_A 419 KDSRISLKDTQIGNLTNRITF-ISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496 (876)
T ss_dssp CCCCCCCCTTTTTCCSCEEEE-ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred cccccchhhceeccccCcccc-hhHHH-hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence 12233455555544 88887 88875 778999999999999987 3788877 88888888
Q ss_pred EcccccCCCccccccccccccceEeecccc-ccC-CchhhhcCCC-------CCCEEEecCCcCcccCcc--cccCCCCC
Q 001988 200 HLGYNNLSGAIPKEIGNLTVLQRISLINNK-LHG-EIPQEIGYLQ-------NLDVLQLGFNNLTGVVPA--TIFNMSTL 268 (985)
Q Consensus 200 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~-~~p~~~~~l~-------~L~~L~Ls~N~l~~~~p~--~l~~l~~L 268 (985)
+|++|++.+.+|..|+++++|+.|+|++|+ ++| .+|..++.++ +|++|+|++|+++ .+|. .+.++++|
T Consensus 497 ~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L 575 (876)
T 4ecn_A 497 ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKL 575 (876)
T ss_dssp EEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTC
T ss_pred ECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCC
Confidence 888888888888888888888888888887 777 7777776665 7777777777777 6676 77777777
Q ss_pred CEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCC-ccEEEccCcccccccCCcccCCCC--CceEe
Q 001988 269 KEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASK-LILLEMGSNSFSGFIPSAIGNLRN--LKLFD 345 (985)
Q Consensus 269 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~~--L~~L~ 345 (985)
++|+|++|+++ .+| .+..+++|+.|+|++|+++ .+|..+.++++ |+.|+|++|+++ .+|..+..++. |+.|+
T Consensus 576 ~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~ 650 (876)
T 4ecn_A 576 GLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVD 650 (876)
T ss_dssp CEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEE
T ss_pred CEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEE
Confidence 77777777776 666 3345667777777777766 66666666666 666666666666 45555555433 55555
Q ss_pred ccCCcccCCCCccccccccc--ccCcccEEEecCCCCCccCCCCccchhhcccceeccccccccccCCcCCCCCCccEEE
Q 001988 346 IFFNNLTSSTPELGFLSSLA--NCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLS 423 (985)
Q Consensus 346 L~~N~l~~~~~~~~~~~~l~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 423 (985)
+++|++++..+... ..+. .++ +|+.|++++|.++...+..+..+++|++|+
T Consensus 651 Ls~N~l~g~ip~l~--~~l~~~~~~-------------------------~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~ 703 (876)
T 4ecn_A 651 FSYNKIGSEGRNIS--CSMDDYKGI-------------------------NASTVTLSYNEIQKFPTELFATGSPISTII 703 (876)
T ss_dssp CCSSCTTTTSSSCS--SCTTTCCCC-------------------------CEEEEECCSSCCCSCCHHHHHTTCCCSEEE
T ss_pred CcCCcCCCccccch--hhhccccCC-------------------------CcCEEEccCCcCCccCHHHHccCCCCCEEE
Confidence 55555554332210 0011 112 456666666666633222334677777777
Q ss_pred ccCCCCCCCCCccccc-------cccccceecccccccCCchhhhh--hccCCCeEEccCCccccccCCCCcCcCcCceE
Q 001988 424 LGGNNLSGSIPVTFGG-------LQKLQGLDLAFNKLAGSIPDEIC--LLSRLNELDLNGNKISGSISSCLGNLTSLQYL 494 (985)
Q Consensus 424 L~~N~l~~~~~~~~~~-------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 494 (985)
|++|+|+.+.+..+.. +++|+.|+|++|+|+ .+|..+. .+++|+.|+|++|+|++ +|..+.++++|+.|
T Consensus 704 Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L 781 (876)
T 4ecn_A 704 LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF 781 (876)
T ss_dssp CCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEE
T ss_pred CCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEE
Confidence 7777777433333332 338888888888888 6777776 78888888888888886 67778888888888
Q ss_pred eeccceeeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceec
Q 001988 495 NLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLE 574 (985)
Q Consensus 495 ~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 574 (985)
+|++|+ ++++|++.+.+|..+.++++|+.|+|++|+| +.+|..+. ++|+.|+|++|++.
T Consensus 782 ~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 782 GIRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp ECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTC
T ss_pred ECCCCC------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCC
Confidence 888876 5667777777777777788888888888888 56777665 57888888888887
Q ss_pred cchhhhhhcccccCeEecCCCccc
Q 001988 575 GPIPESFGNMTSLESLDLSNNKIS 598 (985)
Q Consensus 575 ~~~p~~~~~l~~L~~L~Ls~N~l~ 598 (985)
...+..+.....+..+.|++|++.
T Consensus 841 ~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 841 SIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp EEECGGGHHHHHTTCCEEECCTTS
T ss_pred ccChHHccccccchheeecCCCcc
Confidence 766777777777777888887765
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2e-56 Score=542.23 Aligned_cols=531 Identities=21% Similarity=0.221 Sum_probs=459.5
Q ss_pred cceecccCCcCCCCCCcccccCCCCcEEEccCcccCCCCccccccCCccceeeeccccccCCCChhHhhhccccceeccc
Q 001988 99 LKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQLSGSLSSFTFNTSSILDIRLSKNKLSGKLPENICNHLRYLKHLFLR 178 (985)
Q Consensus 99 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~g~lp~~~~~~l~~L~~L~L~ 178 (985)
.++++.+++.++ .+|..+. ++|++|+|++|++++..+..+..+++|++|++++|++++..|.. ++++++|++|+|+
T Consensus 13 ~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~-~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 13 NITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA-WHGLHHLSNLILT 88 (606)
T ss_dssp TTEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT-TTTCTTCCEEECT
T ss_pred CCceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHH-hhchhhcCEeECC
Confidence 457899999998 6887665 89999999999999999989999999999999999999654544 4889999999999
Q ss_pred CccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccC-CchhhhcCCCCCCEEEecCCcCccc
Q 001988 179 ENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHG-EIPQEIGYLQNLDVLQLGFNNLTGV 257 (985)
Q Consensus 179 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~ 257 (985)
+|.+++..|..|+++++|++|+|++|++++..|..++++++|++|++++|++++ .+|..|+++++|++|++++|++++.
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 999998889999999999999999999998777899999999999999999986 6799999999999999999999998
Q ss_pred CcccccCCCCCC----EEEccCCcCcccCChhhhhcCCCCcEEEecCccCC-CcCCccccCCCCccEEEccCccccc---
Q 001988 258 VPATIFNMSTLK----EIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFS-GTIPSSITNASKLILLEMGSNSFSG--- 329 (985)
Q Consensus 258 ~p~~l~~l~~L~----~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~--- 329 (985)
.|..+..+++|+ +|++++|.++ .+|...+.. .+|+.|++++|.++ +.+|..+.+++.|+.+++..+.+.+
T Consensus 169 ~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 169 TVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp CTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred ChhhhhhhhccccccceeeccCCCcc-eeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence 888888777665 8999999998 555555543 48999999999987 4677889999999999987665543
Q ss_pred ---ccCCcccCCC--CCceEec-cCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhcccceecccc
Q 001988 330 ---FIPSAIGNLR--NLKLFDI-FFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFC 403 (985)
Q Consensus 330 ---~~p~~l~~l~--~L~~L~L-~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n 403 (985)
..+..+..+. .++.+++ ..|.+.+..+ .+..+++|+.|++++|.+.. +| .+..++ +|+.|++++|
T Consensus 247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~-~L~~L~l~~n 317 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV------KFHCLANVSAMSLAGVSIKY-LE-DVPKHF-KWQSLSIIRC 317 (606)
T ss_dssp CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG------SCGGGTTCSEEEEESCCCCC-CC-CCCTTC-CCSEEEEESC
T ss_pred ccccChHHhhhhhhccHhheecccccccccccc------ccccCCCCCEEEecCccchh-hh-hccccc-cCCEEEcccc
Confidence 1222333333 3556666 5566655433 26789999999999999974 55 777776 8999999999
Q ss_pred ccccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCC--chhhhhhccCCCeEEccCCcccccc
Q 001988 404 NISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGS--IPDEICLLSRLNELDLNGNKISGSI 481 (985)
Q Consensus 404 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~ 481 (985)
.+ +.+| .+ .+++|++|++++|...+.. .+..+++|++|++++|++++. +|..+..+++|++|++++|.+++ +
T Consensus 318 ~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~ 391 (606)
T 3vq2_A 318 QL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-M 391 (606)
T ss_dssp CC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-E
T ss_pred cC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-c
Confidence 99 5777 45 9999999999999665433 678999999999999999976 38889999999999999999986 5
Q ss_pred CCCCcCcCcCceEeeccceeeeecC-CCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCc-cCchhhcc
Q 001988 482 SSCLGNLTSLQYLNLGSNRFTFVIP-STFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSG-NIPTTLEG 559 (985)
Q Consensus 482 ~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~ 559 (985)
|..+.++++|++|++++|++++..| ..|.++++|++|++++|.+.+..|..+..+++|+.|++++|++++ .+|..|+.
T Consensus 392 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 471 (606)
T 3vq2_A 392 SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471 (606)
T ss_dssp CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc
Confidence 6889999999999999999999888 789999999999999999999999999999999999999999998 47899999
Q ss_pred cccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCccccccccccccccccccccCCCCCCCCCc-cccccc
Q 001988 560 LKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKLSYLKELNLSFNKLKGEIPRGGPFA-NFTAES 638 (985)
Q Consensus 560 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~-~~~~~~ 638 (985)
+++|++|+|++|++++..|..|.++++|++|+|++|++++.+|..|..+++|++|++++|+++..++....+. ++....
T Consensus 472 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~ 551 (606)
T 3vq2_A 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN 551 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEE
T ss_pred CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999995443323333 467778
Q ss_pred ccCCccccCCCC
Q 001988 639 FMGNELLCGLPN 650 (985)
Q Consensus 639 ~~~n~~lc~~~~ 650 (985)
+.+|++.|+++.
T Consensus 552 l~~N~~~c~c~~ 563 (606)
T 3vq2_A 552 LTNNSVACICEH 563 (606)
T ss_dssp CCSCCCCCSSTT
T ss_pred ccCCCcccCCcc
Confidence 899999998874
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.6e-56 Score=556.54 Aligned_cols=526 Identities=21% Similarity=0.231 Sum_probs=460.8
Q ss_pred eecccCCcCCCCCCcccccCCCCcEEEccCcccCCCCccccccCCccceeeeccccccCCCChhHhhhccccceecccCc
Q 001988 101 SLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQLSGSLSSFTFNTSSILDIRLSKNKLSGKLPENICNHLRYLKHLFLREN 180 (985)
Q Consensus 101 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~g~lp~~~~~~l~~L~~L~L~~n 180 (985)
..|.++++++ .+|. -.++|++|||++|.+++..+..+.++++|++|+|++|.+.+.+++..++++++|++|+|++|
T Consensus 8 ~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 4556666776 4776 45899999999999999999999999999999999998888997777799999999999999
Q ss_pred cccccCCcccCCCCCceEEEcccccCCCccccc--cccccccceEeeccccccCCch-hhhcCCCCCCEEEecCCcCccc
Q 001988 181 MFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKE--IGNLTVLQRISLINNKLHGEIP-QEIGYLQNLDVLQLGFNNLTGV 257 (985)
Q Consensus 181 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~ 257 (985)
.+++..|+.|+++++|++|+|++|.+++.+|.. |+++++|++|+|++|++++..| ..|+++++|++|+|++|.+++.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 999999999999999999999999999877765 9999999999999999987765 6899999999999999999999
Q ss_pred CcccccCC--CCCCEEEccCCcCcccCChhhhhcCC------CCcEEEecCccCCCcCCccccCC---CCccEEEccC--
Q 001988 258 VPATIFNM--STLKEIFLYNNSLSGSLPSRIDLALP------NLEFLNLGINSFSGTIPSSITNA---SKLILLEMGS-- 324 (985)
Q Consensus 258 ~p~~l~~l--~~L~~L~L~~N~l~~~~p~~~~~~l~------~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~L~~-- 324 (985)
.|..+..+ ++|+.|+|++|.+.+..|..+. .++ +|+.|++++|++++.++..+... .+++.|.++.
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred CHHHcccccCCccceEECCCCccccccccchh-hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 99999888 8999999999999987776532 222 49999999999999888877654 6788888873
Q ss_pred -------cccccccCCcccCC--CCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhcc
Q 001988 325 -------NSFSGFIPSAIGNL--RNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSL 395 (985)
Q Consensus 325 -------N~l~~~~p~~l~~l--~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L 395 (985)
|.+.+..+..|..+ ++|+.|++++|.++...+. .+.++++|+.|+|++|++.+..|..+..++ +|
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L 316 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR-----VFETLKDLKVLNLAYNKINKIADEAFYGLD-NL 316 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC-----CSSSCCCCCEEEEESCCCCEECTTTTTTCS-SC
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChh-----hhhcCCCCCEEECCCCcCCCCChHHhcCCC-CC
Confidence 44444555566665 7899999999999877554 478899999999999999999999999988 89
Q ss_pred cceeccccccccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCC
Q 001988 396 ERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGN 475 (985)
Q Consensus 396 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 475 (985)
++|++++|.+++..|..|..+++|++|++++|++++..+..|.++++|+.|+|++|.+++. + .+++|+.|++++|
T Consensus 317 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~~N 391 (844)
T 3j0a_A 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-H----FIPSIPDIFLSGN 391 (844)
T ss_dssp CEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-S----SCCSCSEEEEESC
T ss_pred CEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-c----CCCCcchhccCCC
Confidence 9999999999999999999999999999999999998899999999999999999999853 3 3789999999999
Q ss_pred ccccccCCCCcCcCcCceEeeccceeeeecC-CCccCccceeEEeecCCcccCCccc-cccCCCcccEEEccCCccC---
Q 001988 476 KISGSISSCLGNLTSLQYLNLGSNRFTFVIP-STFWNLKDILSFDISSNLLDGPISL-AIGNLKAVVGIDLSRNNLS--- 550 (985)
Q Consensus 476 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~--- 550 (985)
+++. +|.. ..+++.|++++|++++... ..+.++++|+.|++++|++++..+. .+..+++|+.|+|++|.++
T Consensus 392 ~l~~-l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 467 (844)
T 3j0a_A 392 KLVT-LPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW 467 (844)
T ss_dssp CCCC-CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSC
T ss_pred Cccc-cccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccc
Confidence 9984 4543 4679999999999987532 2345899999999999999976543 4667899999999999997
Q ss_pred --ccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCccccccccccccccccccccCCCCCC
Q 001988 551 --GNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKLSYLKELNLSFNKLKGEIPRG 628 (985)
Q Consensus 551 --~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~ 628 (985)
+..|..|.++++|+.|+|++|+|++.+|..|.++++|+.|+|++|+|++..|..+. ++|+.|||++|++++.+|..
T Consensus 468 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~ 545 (844)
T 3j0a_A 468 ETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV 545 (844)
T ss_dssp CSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC
T ss_pred ccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH
Confidence 45567799999999999999999999999999999999999999999988777776 89999999999999999964
Q ss_pred CCCcccccccccCCccccCCCC
Q 001988 629 GPFANFTAESFMGNELLCGLPN 650 (985)
Q Consensus 629 ~~~~~~~~~~~~~n~~lc~~~~ 650 (985)
+.++....+.+||+.|.++.
T Consensus 546 --~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 546 --FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp --CSSCCEEEEEEECCCCSSSC
T ss_pred --hCCcCEEEecCCCccccccc
Confidence 66788888999999998775
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-52 Score=502.71 Aligned_cols=508 Identities=21% Similarity=0.254 Sum_probs=381.2
Q ss_pred EEecCCcccccCchhcccccccceecccCCcCCCCCCcccccCCCCcEEEccCcccCCCCccccccCCccceeeeccccc
Q 001988 78 LNLSSFNLQGTIPPEIANLSSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQLSGSLSSFTFNTSSILDIRLSKNKL 157 (985)
Q Consensus 78 l~L~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l 157 (985)
++-++.+++ .+|..+. +++++|||++|.+++..|..|.++++|++|+|++|++++..+..+..+++|++|+|++|++
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp EECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence 444555666 5666543 5788999999999877777888899999999999988877777777778888888888887
Q ss_pred cCCCChhHhhhccccceecccCccccccCCcccCCCCCceEEEcccccCCC-ccccccccccccceEeeccccccCCchh
Q 001988 158 SGKLPENICNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSG-AIPKEIGNLTVLQRISLINNKLHGEIPQ 236 (985)
Q Consensus 158 ~g~lp~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 236 (985)
++ +|+..++.+++|++|++++|.+++..+..++++++|++|+|++|.+++ .+|..|+++++|++|++++|++++..|.
T Consensus 89 ~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 167 (570)
T 2z63_A 89 QS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (570)
T ss_dssp CE-ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred Cc-cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence 74 444444778888888888888875555568888888888888888876 4678888888888888888888877777
Q ss_pred hhcCCCCC----CEEEecCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCc------
Q 001988 237 EIGYLQNL----DVLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGT------ 306 (985)
Q Consensus 237 ~~~~l~~L----~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~------ 306 (985)
.++.+++| +.|++++|.+++..|..+... +|++|++++|......-......+++++.+.+..+.+...
T Consensus 168 ~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 246 (570)
T 2z63_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246 (570)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEEC
T ss_pred HccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhc
Confidence 77777777 788888888887777666655 6888888877554322223334566776666654443311
Q ss_pred CCccccCCC--CccEEEccCc-ccccccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCcc
Q 001988 307 IPSSITNAS--KLILLEMGSN-SFSGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGF 383 (985)
Q Consensus 307 ~p~~~~~l~--~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~ 383 (985)
....+..+. .++.+++++| .+.+..|..+. .+++|++|++++|.+. .
T Consensus 247 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~-----------------------------~l~~L~~L~l~~~~l~-~ 296 (570)
T 2z63_A 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN-----------------------------CLTNVSSFSLVSVTIE-R 296 (570)
T ss_dssp CTTTTGGGGGSEEEEEEEEETTEEESCSTTTTG-----------------------------GGTTCSEEEEESCEEC-S
T ss_pred chhhhccccccchhhhhhhcchhhhhhchhhhc-----------------------------CcCcccEEEecCccch-h
Confidence 111111111 1333444444 34444444444 4455555555555554 3
Q ss_pred CCCCccchhhcccceeccccccccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCc--hhhh
Q 001988 384 LPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSI--PDEI 461 (985)
Q Consensus 384 ~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--p~~~ 461 (985)
+|..+..+ +|+.|++++|.+. .+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|++++.. |..+
T Consensus 297 l~~~~~~~--~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~ 369 (570)
T 2z63_A 297 VKDFSYNF--GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSD 369 (570)
T ss_dssp CCBCCSCC--CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHH
T ss_pred hhhhhccC--CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccc
Confidence 44444444 4666666666665 3333 3567888888888888766554 67888888888888887554 6778
Q ss_pred hhccCCCeEEccCCccccccCCCCcCcCcCceEeeccceeeeecC-CCccCccceeEEeecCCcccCCccccccCCCccc
Q 001988 462 CLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFVIP-STFWNLKDILSFDISSNLLDGPISLAIGNLKAVV 540 (985)
Q Consensus 462 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~ 540 (985)
..+++|++|++++|++++..+. +..+++|++|++++|.+++..| ..|.++++|++|++++|.+.+..+..+..+++|+
T Consensus 370 ~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 448 (570)
T 2z63_A 370 FGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448 (570)
T ss_dssp HTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred cccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCc
Confidence 8889999999999998876555 8889999999999999988766 5788899999999999999988888999999999
Q ss_pred EEEccCCccC-ccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCccccccccccccccccc
Q 001988 541 GIDLSRNNLS-GNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKLSYLKELNLSFN 619 (985)
Q Consensus 541 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N 619 (985)
.|++++|+++ +.+|..+..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|+.|++++|
T Consensus 449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence 9999999997 578999999999999999999999988999999999999999999999988888999999999999999
Q ss_pred cccCCCCCC
Q 001988 620 KLKGEIPRG 628 (985)
Q Consensus 620 ~l~~~~p~~ 628 (985)
+++|.+|..
T Consensus 529 ~~~~~~~~~ 537 (570)
T 2z63_A 529 PWDCSCPRI 537 (570)
T ss_dssp CBCCCTTTT
T ss_pred cccCCCcch
Confidence 999999874
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.7e-53 Score=508.57 Aligned_cols=498 Identities=20% Similarity=0.228 Sum_probs=321.2
Q ss_pred cceeeeEEEeCCCCeEEEEEecCCcccccCchhcccccccceecccCCcCCCCCCcccccCCCCcEEEccCcccCCCCcc
Q 001988 60 ICSWIGIICDVNSHKVTTLNLSSFNLQGTIPPEIANLSSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQLSGSLSS 139 (985)
Q Consensus 60 ~c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~ 139 (985)
.|.|.|| |+. ++++++ .+|+.+. ++|++|||++|++++..|..+.++++|++|+|++|++++..++
T Consensus 3 ~C~~~~~-c~~----------~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CDG----------RSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-EEC----------TTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-EEC----------CCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 5999999 964 456676 6787665 7999999999999988888999999999999999999977777
Q ss_pred ccccCCccceeeeccccccCCCChhHhhhccccceecccCccccc-cCCcccCCCCCceEEEcccccCCCccc-cccccc
Q 001988 140 FTFNTSSILDIRLSKNKLSGKLPENICNHLRYLKHLFLRENMFYG-KIPSSLSKCKQLQELHLGYNNLSGAIP-KEIGNL 217 (985)
Q Consensus 140 ~~~~~~~L~~L~ls~n~l~g~lp~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~~~l 217 (985)
.+..+++|++|++++|++++ +|+..++++++|++|+|++|.+++ .+|..++++++|++|++++|++.+.+| ..|+++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l 147 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred hccccccCCEEECCCCccCc-cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc
Confidence 77777777777777777764 333333566666666666666664 345566666666666666666433444 456666
Q ss_pred cccceEeeccccccCCchhhhcCCCCCCEEEecCCcCcccCcccccCCCCCCEEEccCCcCcccC--ChhhhhcCCCCcE
Q 001988 218 TVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSL--PSRIDLALPNLEF 295 (985)
Q Consensus 218 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~--p~~~~~~l~~L~~ 295 (985)
++|++|++++|++++.+|..++.+++|++|+++.|.+....+..+..+++|++|++++|++++.. |..+
T Consensus 148 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------- 218 (549)
T 2z81_A 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPV--------- 218 (549)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSS---------
T ss_pred cccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccch---------
Confidence 66666666666666666666666666666666666654222222234555555555555554311 1111
Q ss_pred EEecCccCCCcCCccccCCCCccEEEccCcccccccC----CcccCCCCCceEeccCCcccCCCCcc-cccccccccCcc
Q 001988 296 LNLGINSFSGTIPSSITNASKLILLEMGSNSFSGFIP----SAIGNLRNLKLFDIFFNNLTSSTPEL-GFLSSLANCKKL 370 (985)
Q Consensus 296 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p----~~l~~l~~L~~L~L~~N~l~~~~~~~-~~~~~l~~l~~L 370 (985)
...+++|+.|++++|.+++..+ ..+..+++|+.+++++|.+.+...-. .....+..+.+|
T Consensus 219 ---------------~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L 283 (549)
T 2z81_A 219 ---------------DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283 (549)
T ss_dssp ---------------CCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTC
T ss_pred ---------------hhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccc
Confidence 1234455555555555544322 23345556666666666655432110 001124456677
Q ss_pred cEEEecCCCCCccCCCCccchhhcccceeccccccccccCCcCCCCCCccEEEccCCCCCCCCCccc-cccccccceecc
Q 001988 371 RYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTF-GGLQKLQGLDLA 449 (985)
Q Consensus 371 ~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls 449 (985)
+.|++.++.+..... +. .++..+...++|++|++++|+++ .+|..+ .++++|++|+++
T Consensus 284 ~~L~l~~~~i~~~~~--~~------------------~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 284 ETVTIRRLHIPQFYL--FY------------------DLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp CEEEEESCBCSCGGG--SC------------------CCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECC
T ss_pred ccccccccccchhhh--cc------------------cchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEcc
Confidence 777777776542110 00 01111223456667777777766 344433 456777777777
Q ss_pred cccccCCchhh---hhhccCCCeEEccCCccccccC--CCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCc
Q 001988 450 FNKLAGSIPDE---ICLLSRLNELDLNGNKISGSIS--SCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNL 524 (985)
Q Consensus 450 ~N~l~~~~p~~---~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~ 524 (985)
+|++++.+|.. ++.+++|++|+|++|++++..+ ..+..+++|++|++++|+++. +|..+..+++|++|++++|+
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSC
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCC
Confidence 77776655432 4566677777777777765432 346667777777777777763 56666677777777777777
Q ss_pred ccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCcc
Q 001988 525 LDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVS 604 (985)
Q Consensus 525 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 604 (985)
++++.... .++|+.|+|++|+|++.+ ..+++|++|+|++|+|+ .+|. ...+++|++|||++|+|++.+|..
T Consensus 422 l~~l~~~~---~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~ 492 (549)
T 2z81_A 422 IRVVKTCI---PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGI 492 (549)
T ss_dssp CSCCCTTS---CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTG
T ss_pred cccccchh---cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHH
Confidence 76543221 257888888888888653 46788899999999988 4665 467889999999999999888888
Q ss_pred ccccccccccccccccccCCCCC
Q 001988 605 FEKLSYLKELNLSFNKLKGEIPR 627 (985)
Q Consensus 605 ~~~l~~L~~L~ls~N~l~~~~p~ 627 (985)
|..+++|+.|++++|++.|.+|.
T Consensus 493 ~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 493 FDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp GGGCTTCCEEECCSSCBCCCHHH
T ss_pred HhcCcccCEEEecCCCccCCCcc
Confidence 89999999999999999888874
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-50 Score=488.37 Aligned_cols=491 Identities=21% Similarity=0.210 Sum_probs=399.9
Q ss_pred CeEEEEEecCCcccccCchhcccccccceecccCCcCCCCCCcccccCCCCcEEEccCcccCCCCccccccCCccceeee
Q 001988 73 HKVTTLNLSSFNLQGTIPPEIANLSSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQLSGSLSSFTFNTSSILDIRL 152 (985)
Q Consensus 73 ~~v~~l~L~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 152 (985)
.+++.|||++|++++..+.++.++++|++|||++|++++..|..|.++++|++|+|++|++++..+..+..+++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 46899999999999888889999999999999999999877888999999999999999999988899999999999999
Q ss_pred ccccccCCCChhHhhhccccceecccCccccc-cCCcccCCCCCceEEEcccccCCCcccccccccccc----ceEeecc
Q 001988 153 SKNKLSGKLPENICNHLRYLKHLFLRENMFYG-KIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVL----QRISLIN 227 (985)
Q Consensus 153 s~n~l~g~lp~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L----~~L~L~~ 227 (985)
++|++++ +|...++++++|++|++++|.+++ .+|..|+++++|++|++++|++++..|..++.+++| +.|++++
T Consensus 108 ~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 108 VETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp TTSCCCC-STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred ccccccc-CCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 9999984 554345889999999999999997 579999999999999999999998888899999999 8999999
Q ss_pred ccccCCchhhhcCCCCCCEEEecCCcCcc-cCcccccCCCCCCEEEccCCcCcc-----cCChhhhhcCC--CCcEEEec
Q 001988 228 NKLHGEIPQEIGYLQNLDVLQLGFNNLTG-VVPATIFNMSTLKEIFLYNNSLSG-----SLPSRIDLALP--NLEFLNLG 299 (985)
Q Consensus 228 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~-----~~p~~~~~~l~--~L~~L~Ls 299 (985)
|.+++..|..+..+ +|+.|++++|.... .+|..+..++.++.+.+..+.+.. .++...+..++ .++.++++
T Consensus 187 n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 187 NPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 99998888888776 89999999986542 456777888888877665433221 23333333333 46788888
Q ss_pred Cc-cCCCcCCccccCCCCccEEEccCcccccccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCC
Q 001988 300 IN-SFSGTIPSSITNASKLILLEMGSNSFSGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGN 378 (985)
Q Consensus 300 ~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N 378 (985)
+| .+.+.+|..+..+++|+.|++++|.++ .+|..+..+ +|++|++++|++...+. ..+++|++|++++|
T Consensus 266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~--------~~l~~L~~L~l~~n 335 (570)
T 2z63_A 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT--------LKLKSLKRLTFTSN 335 (570)
T ss_dssp ETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB--------CBCSSCCEEEEESC
T ss_pred cchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc--------ccccccCEEeCcCC
Confidence 88 788899999999999999999999998 578888888 99999999998875443 24566777777777
Q ss_pred CCCccCCCCccchhhcccceeccccccccccCCcCCCCCCccEEEccCCCCCCCC--CccccccccccceecccccccCC
Q 001988 379 PLDGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSI--PVTFGGLQKLQGLDLAFNKLAGS 456 (985)
Q Consensus 379 ~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~ 456 (985)
.+.+..+. ..+++|++|++++|++++.. |..+.++++|++|++++|.+.+.
T Consensus 336 ~~~~~~~~---------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 388 (570)
T 2z63_A 336 KGGNAFSE---------------------------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388 (570)
T ss_dssp BSCCBCCC---------------------------CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE
T ss_pred cccccccc---------------------------ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc
Confidence 65543322 44566666777766666443 55666777777777777777754
Q ss_pred chhhhhhccCCCeEEccCCccccccC-CCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCccc-CCcccccc
Q 001988 457 IPDEICLLSRLNELDLNGNKISGSIS-SCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLD-GPISLAIG 534 (985)
Q Consensus 457 ~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~-~~~~~~~~ 534 (985)
.+. +..+++|+.|++++|++++..+ ..+.++++|++|++++|++++..|..|.++++|++|++++|.+. +..|..+.
T Consensus 389 ~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~ 467 (570)
T 2z63_A 389 SSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467 (570)
T ss_dssp EEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred ccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhh
Confidence 433 6777777777777777776555 46777778888888888887777777778888888888888876 46677888
Q ss_pred CCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCc
Q 001988 535 NLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPV 603 (985)
Q Consensus 535 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 603 (985)
.+++|+.|++++|++++..|..|+.+++|++|+|++|++++.+|..|.++++|+.|++++|++++..|.
T Consensus 468 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 889999999999999988899999999999999999999988888899999999999999999987664
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.5e-50 Score=488.74 Aligned_cols=529 Identities=23% Similarity=0.243 Sum_probs=419.4
Q ss_pred EecCCcccccCchhcccccccceecccCCcCCCCCCcccccCCCCcEEEccCcccCCCCccccccCCccceeeecccccc
Q 001988 79 NLSSFNLQGTIPPEIANLSSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQLSGSLSSFTFNTSSILDIRLSKNKLS 158 (985)
Q Consensus 79 ~L~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~ 158 (985)
|=++.+|+ .+|+.+. +++++|||++|+|++..|.+|.++++|++|||++|+|++..++.+.++++|++|+|++|+++
T Consensus 37 ~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 37 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp ECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred ECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 44555677 6777653 47999999999999766778999999999999999999988889999999999999999998
Q ss_pred CCCChhHhhhccccceecccCccccccCCcccCCCCCceEEEcccccCCC-ccccccccccccceEeeccccccCCchhh
Q 001988 159 GKLPENICNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSG-AIPKEIGNLTVLQRISLINNKLHGEIPQE 237 (985)
Q Consensus 159 g~lp~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 237 (985)
.+|+..|.++++|++|+|++|++++..+..|+++++|++|+|++|.+++ .+|..++++++|++|++++|++++..|..
T Consensus 114 -~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 114 -SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp -EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred -CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 6788888999999999999999997777789999999999999999985 46888999999999999999999888888
Q ss_pred hcCCCCC----CEEEecCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCC------CcC
Q 001988 238 IGYLQNL----DVLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFS------GTI 307 (985)
Q Consensus 238 ~~~l~~L----~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~------~~~ 307 (985)
|..+.++ ..++++.|.++...+.. .....++.+++++|.....++...+..++.++...+..+... ...
T Consensus 193 l~~L~~l~~~~~~~~ls~n~l~~i~~~~-~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 271 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 271 (635)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTT-TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred ccchhhhhhhhhhhhcccCcccccCccc-ccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccc
Confidence 8776654 47899999999655544 445568889999998876666667778888888887655433 233
Q ss_pred CccccCCCCccEEEccCccccc---ccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCccC
Q 001988 308 PSSITNASKLILLEMGSNSFSG---FIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFL 384 (985)
Q Consensus 308 p~~~~~l~~L~~L~L~~N~l~~---~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 384 (985)
...+.....+...++..+.... ..+..+..+.+++.+++..+.+.... .+..+..|+.|++.+|.+.+..
T Consensus 272 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-------~~~~~~~L~~L~l~~~~~~~~~ 344 (635)
T 4g8a_A 272 KSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-------DFSYNFGWQHLELVNCKFGQFP 344 (635)
T ss_dssp TTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG-------GGGSCCCCSEEEEESCEESSCC
T ss_pred ccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc-------ccccchhhhhhhcccccccCcC
Confidence 4455556666666666554432 33455677788888888888776543 2455678888888888887654
Q ss_pred CCCccchhhcccceeccccccccccCCcCCCCCCccEEEccCCCCCC--CCCccccccccccceecccccccCCchhhhh
Q 001988 385 PSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSG--SIPVTFGGLQKLQGLDLAFNKLAGSIPDEIC 462 (985)
Q Consensus 385 p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 462 (985)
+..+ . .|+.+++..|.+... .....+++|+.|++++|.+.. ..+..+..+.+|+.|+++.|.+.. .+..+.
T Consensus 345 ~~~l---~-~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~ 417 (635)
T 4g8a_A 345 TLKL---K-SLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFL 417 (635)
T ss_dssp CCBC---T-TCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCT
T ss_pred cccc---h-hhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-cccccc
Confidence 4333 2 577888888877643 234578888888888888853 345566677888888888888774 455677
Q ss_pred hccCCCeEEccCCccccccC-CCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCcc-cCCccccccCCCccc
Q 001988 463 LLSRLNELDLNGNKISGSIS-SCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLL-DGPISLAIGNLKAVV 540 (985)
Q Consensus 463 ~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l-~~~~~~~~~~l~~L~ 540 (985)
.+++|+.+++++|......+ ..|.++++++.++++.|.+++..+..+..+++++.|++++|.+ .+..|..|..+++|+
T Consensus 418 ~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~ 497 (635)
T 4g8a_A 418 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 497 (635)
T ss_dssp TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred ccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccC
Confidence 78888888888887765544 4677888888888888888888888888888888888888874 456777888888888
Q ss_pred EEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCcccccc-ccccccccccc
Q 001988 541 GIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKL-SYLKELNLSFN 619 (985)
Q Consensus 541 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~ls~N 619 (985)
.|+|++|+|++..|..|+++++|++|+|++|+|++..|..|.++++|++|||++|+|++..|..|..+ ++|++|+|++|
T Consensus 498 ~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 498 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred EEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888887 57888888888
Q ss_pred cccCCCC
Q 001988 620 KLKGEIP 626 (985)
Q Consensus 620 ~l~~~~p 626 (985)
++.+.+.
T Consensus 578 p~~C~C~ 584 (635)
T 4g8a_A 578 DFACTCE 584 (635)
T ss_dssp CBCCSGG
T ss_pred CCcccCC
Confidence 8887664
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.4e-50 Score=493.50 Aligned_cols=483 Identities=19% Similarity=0.232 Sum_probs=263.3
Q ss_pred cccceecccCCcCCCCCCcccccCCCCcEEEc-cCcccCCCCccccccC----Cc--cceeee----------ccccccC
Q 001988 97 SSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYL-MDNQLSGSLSSFTFNT----SS--ILDIRL----------SKNKLSG 159 (985)
Q Consensus 97 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L-s~n~l~~~~~~~~~~~----~~--L~~L~l----------s~n~l~g 159 (985)
.+++.|+|++|.++|.+|++|++|++|++|+| ++|.++|..+-..... +. ++.++. ....+++
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57899999999999999999999999999999 9999987643221111 00 000000 0011111
Q ss_pred CCChhHh----------hhccccceecccC--ccccccCCcccCCCCCceEEEcccccCCCc-cccccccccccceEeec
Q 001988 160 KLPENIC----------NHLRYLKHLFLRE--NMFYGKIPSSLSKCKQLQELHLGYNNLSGA-IPKEIGNLTVLQRISLI 226 (985)
Q Consensus 160 ~lp~~~~----------~~l~~L~~L~L~~--n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~ 226 (985)
.++..+. .....++.+.++. |.+++ +|+.|+++++|++|+|++|+|+|. +|..+.. .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~--------~s 473 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWED--------AN 473 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC--------TT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccc--------cc
Confidence 1111110 1122344444444 77776 777788888888888888888762 1111100 01
Q ss_pred cccccCCchhhhc--CCCCCCEEEecCCcCcccCcccccCCCCCCEEEccCCc-Ccc-cCChhhh------hcCCCCcEE
Q 001988 227 NNKLHGEIPQEIG--YLQNLDVLQLGFNNLTGVVPATIFNMSTLKEIFLYNNS-LSG-SLPSRID------LALPNLEFL 296 (985)
Q Consensus 227 ~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~-~~p~~~~------~~l~~L~~L 296 (985)
.|.++|.+|+.++ ++++|++|+|++|++.+.+|..+.++++|++|+|++|+ ++| .+|..+. ..+++|++|
T Consensus 474 ~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp SHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred cccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence 1222223444444 44444444444444444444444444444444444444 444 3443321 123455666
Q ss_pred EecCccCCCcCCc--cccCCCCccEEEccCcccccccCCcccCCCCCceEeccCCcccCCCCcccccccccccCc-ccEE
Q 001988 297 NLGINSFSGTIPS--SITNASKLILLEMGSNSFSGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKK-LRYL 373 (985)
Q Consensus 297 ~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~-L~~L 373 (985)
+|++|+++ .+|. .++++++|+.|+|++|+++ .+| .++.+++|+.|++++|+++.++. .+.++++ |++|
T Consensus 554 ~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~------~l~~l~~~L~~L 624 (876)
T 4ecn_A 554 YMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPE------DFCAFTDQVEGL 624 (876)
T ss_dssp ECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCT------TSCEECTTCCEE
T ss_pred EeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchH------HHhhccccCCEE
Confidence 66666555 5555 5566666666666666665 445 56666666666666666653332 2455555 6666
Q ss_pred EecCCCCCccCCCCccchh-hcccceeccccccccccCCc---CC--CCCCccEEEccCCCCCCCCCcccccccccccee
Q 001988 374 GLGGNPLDGFLPSSIGNLS-LSLERLNIAFCNISGNIPKA---IG--NLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLD 447 (985)
Q Consensus 374 ~L~~N~l~~~~p~~~~~l~-~~L~~L~L~~n~l~~~~~~~---~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 447 (985)
+|++|+++ .+|..+.... .+|+.|++++|++++.+|.. +. .+++|++|+|++|+++...+..+..+++|+.|+
T Consensus 625 ~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~ 703 (876)
T 4ecn_A 625 GFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703 (876)
T ss_dssp ECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEE
T ss_pred ECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEE
Confidence 66666665 4454444332 12445555555554433321 11 223566666666666633333334555666666
Q ss_pred cccccccCCchhhhhh--------ccCCCeEEccCCccccccCCCCc--CcCcCceEeeccceeeeecCCCccCccceeE
Q 001988 448 LAFNKLAGSIPDEICL--------LSRLNELDLNGNKISGSISSCLG--NLTSLQYLNLGSNRFTFVIPSTFWNLKDILS 517 (985)
Q Consensus 448 Ls~N~l~~~~p~~~~~--------l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 517 (985)
|++|+|+ .+|..+.. +++|+.|+|++|+|+ .+|..+. .+++|+.|+|++|+|++ +|..+.++++|+.
T Consensus 704 Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~ 780 (876)
T 4ecn_A 704 LSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKA 780 (876)
T ss_dssp CCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCE
T ss_pred CCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCE
Confidence 6666655 33333221 114555555555554 3344443 44445555555554444 3444444444444
Q ss_pred EeecCCcccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcc
Q 001988 518 FDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKI 597 (985)
Q Consensus 518 L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 597 (985)
|++++|+ ++++|++.+.+|..|..+++|+.|+|++|+| +.+|..+. ++|+.|||++|++
T Consensus 781 L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 781 FGIRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp EECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred EECCCCC------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCC
Confidence 4444443 3345777777777777777777777777777 46666654 5777777777777
Q ss_pred cCCCCcccccccccccccccccccc
Q 001988 598 SGSIPVSFEKLSYLKELNLSFNKLK 622 (985)
Q Consensus 598 ~~~~p~~~~~l~~L~~L~ls~N~l~ 622 (985)
....+..+.....+..+.|++|++.
T Consensus 840 ~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 840 ISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp CEEECGGGHHHHHTTCCEEECCTTS
T ss_pred CccChHHccccccchheeecCCCcc
Confidence 7666666666666666677766554
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.8e-50 Score=489.98 Aligned_cols=472 Identities=19% Similarity=0.285 Sum_probs=302.0
Q ss_pred cccceecccCCcCCCCCCcccccCCCCcEEEccCcccCCCCccccccCCccceeeeccccccCCCChhHhhhccccceec
Q 001988 97 SSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQLSGSLSSFTFNTSSILDIRLSKNKLSGKLPENICNHLRYLKHLF 176 (985)
Q Consensus 97 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~g~lp~~~~~~l~~L~~L~ 176 (985)
.+++.|+|++|.++|.+|+++++|++|++|+|++|.+.... ..+.. -.+.-.+|... +..|+ ++
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~-~~~~~-----------~~~~~~~~~~~---~~~l~-l~ 144 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNE-RLFGP-----------KGISANMSDEQ---KQKMR-MH 144 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTC-CSBST-----------TSBCTTCCHHH---HHHHH-TH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCC-ccccc-----------cccccCchHHH---HHHHH-hh
Confidence 47889999999999999999999999999999999873110 00000 00001333333 23333 45
Q ss_pred ccCccccccCCcccCC-CCCceEEEcccccCCCccccccccccccceEeec--cccccCCchhhhcCCCCCCEEEecCCc
Q 001988 177 LRENMFYGKIPSSLSK-CKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLI--NNKLHGEIPQEIGYLQNLDVLQLGFNN 253 (985)
Q Consensus 177 L~~n~l~~~~p~~l~~-l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~--~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 253 (985)
+++|.+.+.+|..+.. +.++..+++....+.. .....++.+.+. +|+++| +|..|+++++|++|+|++|+
T Consensus 145 l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~ 217 (636)
T 4eco_A 145 YQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSP 217 (636)
T ss_dssp HHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCC
T ss_pred HHHhhhccCchhhHHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCc
Confidence 5555555444444431 1122222222222110 111112222222 344554 55555555555555555555
Q ss_pred Cccc-----------------Cccccc--CCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCcc-CCC-cCCcccc
Q 001988 254 LTGV-----------------VPATIF--NMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINS-FSG-TIPSSIT 312 (985)
Q Consensus 254 l~~~-----------------~p~~l~--~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~-l~~-~~p~~~~ 312 (985)
+++. +|..++ ++++|++|+|++|++.+.+|..+ ..+++|++|+|++|+ ++| .+|..++
T Consensus 218 l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~ 296 (636)
T 4eco_A 218 FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQ 296 (636)
T ss_dssp CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHH
T ss_pred cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHH
Confidence 5543 555555 55555555555555555555443 245566666666665 665 5666665
Q ss_pred CC------CCccEEEccCcccccccCC--cccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCccC
Q 001988 313 NA------SKLILLEMGSNSFSGFIPS--AIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFL 384 (985)
Q Consensus 313 ~l------~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 384 (985)
++ ++|++|++++|+++ .+|. .++++++|++|++++|+++ |.+
T Consensus 297 ~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~-----------------------------g~i 346 (636)
T 4eco_A 297 ALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE-----------------------------GKL 346 (636)
T ss_dssp HHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE-----------------------------EEC
T ss_pred hhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCc-----------------------------cch
Confidence 55 89999999999999 7888 8998887777777766655 334
Q ss_pred CCCccchhhcccceeccccccccccCCcCCCCCC-ccEEEccCCCCCCCCCccccccc--cccceecccccccCCchhhh
Q 001988 385 PSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSN-LIVLSLGGNNLSGSIPVTFGGLQ--KLQGLDLAFNKLAGSIPDEI 461 (985)
Q Consensus 385 p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~p~~~ 461 (985)
| .+..++ +|++|++++|+++ .+|..+..+++ |++|++++|+++ .+|..+..+. +|+.|++++|++++.+|..+
T Consensus 347 p-~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 422 (636)
T 4eco_A 347 P-AFGSEI-KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422 (636)
T ss_dssp C-CCEEEE-EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSS
T ss_pred h-hhCCCC-CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhh
Confidence 4 444444 5666666666666 66777888888 999999999988 6777777654 88899999999888888777
Q ss_pred h-------hccCCCeEEccCCccccccCCCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCcccCCcccccc
Q 001988 462 C-------LLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIG 534 (985)
Q Consensus 462 ~-------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~ 534 (985)
. .+++|++|+|++|++++..+..+..+++|++|+|++|+++.+.+..+.... ..+.
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~-----------------~~~~ 485 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN-----------------ENFK 485 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT-----------------EECT
T ss_pred cccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc-----------------cccc
Confidence 7 667788888888888754444455677788888888887744333333221 0112
Q ss_pred CCCcccEEEccCCccCccCchhhc--ccccceeeeeecceeccchhhhhhcccccCeEec------CCCcccCCCCcccc
Q 001988 535 NLKAVVGIDLSRNNLSGNIPTTLE--GLKSLQNISLAYNRLEGPIPESFGNMTSLESLDL------SNNKISGSIPVSFE 606 (985)
Q Consensus 535 ~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~~~ 606 (985)
++++|+.|+|++|+|+ .+|..+. .+++|+.|+|++|+|++ +|..+.++++|++|+| ++|++.+.+|..+.
T Consensus 486 ~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~ 563 (636)
T 4eco_A 486 NTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563 (636)
T ss_dssp TGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG
T ss_pred ccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHh
Confidence 2335555566666555 4555554 56666666666666665 5555666666666666 77999999999999
Q ss_pred ccccccccccccccccCCCCCCCCCcccccccccCCccccC
Q 001988 607 KLSYLKELNLSFNKLKGEIPRGGPFANFTAESFMGNELLCG 647 (985)
Q Consensus 607 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~ 647 (985)
.+++|++|+|++|++ +.+|... +.++....+.+|+..|-
T Consensus 564 ~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 564 LCPSLTQLQIGSNDI-RKVNEKI-TPNISVLDIKDNPNISI 602 (636)
T ss_dssp GCSSCCEEECCSSCC-CBCCSCC-CTTCCEEECCSCTTCEE
T ss_pred cCCCCCEEECCCCcC-CccCHhH-hCcCCEEECcCCCCccc
Confidence 999999999999999 7888753 36777788888887664
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.7e-49 Score=475.58 Aligned_cols=481 Identities=18% Similarity=0.195 Sum_probs=401.0
Q ss_pred eeccccccCCCChhHhhhccccceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccc
Q 001988 151 RLSKNKLSGKLPENICNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKL 230 (985)
Q Consensus 151 ~ls~n~l~g~lp~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 230 (985)
|.++|.++ .+|..++ ++|++|+|++|.+++..|..|+++++|++|+|++|++++..|+.|+++++|++|+|++|++
T Consensus 11 ~~~~~~l~-~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 11 DGRSRSFT-SIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp ECTTSCCS-SCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCccc-cccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 44445554 6777663 6899999999999988889999999999999999999988888999999999999999999
Q ss_pred cCCchhhhcCCCCCCEEEecCCcCcc-cCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCc
Q 001988 231 HGEIPQEIGYLQNLDVLQLGFNNLTG-VVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPS 309 (985)
Q Consensus 231 ~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~ 309 (985)
++..|..|+++++|++|++++|++++ ..|..+.++++|++|++++|++.+.+|...+..+++|++|++++|++++.+|.
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 98888889999999999999999987 46788999999999999999966678776667899999999999999999999
Q ss_pred cccCCCCccEEEccCcccccccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCc-
Q 001988 310 SITNASKLILLEMGSNSFSGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSI- 388 (985)
Q Consensus 310 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~- 388 (985)
.+..+++|+.|+++.|.+....+..+..+++|++|++++|++++..... ......+++|+.|++++|.+.+..+..+
T Consensus 167 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 244 (549)
T 2z81_A 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSP--LPVDEVSSPMKKLAFRGSVLTDESFNELL 244 (549)
T ss_dssp TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCC--CSSCCCCCCCCEEEEESCEEEHHHHHHHH
T ss_pred hhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccc--cchhhhhhcccceeccccccchhHHHHHH
Confidence 9999999999999999987544444567999999999999998763211 1123467899999999999886544333
Q ss_pred ---cchhhcccceecccccccccc------CCcCCCCCCccEEEccCCCCCCC-----CCccccccccccceeccccccc
Q 001988 389 ---GNLSLSLERLNIAFCNISGNI------PKAIGNLSNLIVLSLGGNNLSGS-----IPVTFGGLQKLQGLDLAFNKLA 454 (985)
Q Consensus 389 ---~~l~~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~ 454 (985)
..+. +|+.+++++|.+.+.. ...+..+++|+.|++.++.+... .+..+....+|+.|++++|.+.
T Consensus 245 ~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~ 323 (549)
T 2z81_A 245 KLLRYIL-ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323 (549)
T ss_dssp GGGGGCT-TCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC
T ss_pred HHhhhhc-cccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc
Confidence 3333 7999999999987642 23457788999999999987642 1222345678999999999998
Q ss_pred CCchhhh-hhccCCCeEEccCCccccccC---CCCcCcCcCceEeeccceeeeecC--CCccCccceeEEeecCCcccCC
Q 001988 455 GSIPDEI-CLLSRLNELDLNGNKISGSIS---SCLGNLTSLQYLNLGSNRFTFVIP--STFWNLKDILSFDISSNLLDGP 528 (985)
Q Consensus 455 ~~~p~~~-~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~ls~N~l~~~ 528 (985)
.+|..+ ..+++|++|+|++|++++.+| ..+..+++|++|++++|+++++.+ ..+..+++|++|++++|++++
T Consensus 324 -~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~- 401 (549)
T 2z81_A 324 -LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP- 401 (549)
T ss_dssp -CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-
T ss_pred -cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-
Confidence 566665 679999999999999998763 458899999999999999997643 568899999999999999995
Q ss_pred ccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCcccccc
Q 001988 529 ISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKL 608 (985)
Q Consensus 529 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 608 (985)
+|..+..+++|+.|++++|+|++ +|..+ .++|++|+|++|+|++.+ ..+++|++|+|++|+|+ .+|. ...+
T Consensus 402 lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l 472 (549)
T 2z81_A 402 MPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLF 472 (549)
T ss_dssp CCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGC
T ss_pred CChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccC
Confidence 56688999999999999999984 44444 268999999999999753 57899999999999999 6776 5789
Q ss_pred ccccccccccccccCCCCCC-CCCcccccccccCCccccCCC
Q 001988 609 SYLKELNLSFNKLKGEIPRG-GPFANFTAESFMGNELLCGLP 649 (985)
Q Consensus 609 ~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~ 649 (985)
++|++|++++|++++.+|.. ..+.++....+.+|++.|.++
T Consensus 473 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 473 PVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp TTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 99999999999999988863 556777888899999988765
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-49 Score=472.96 Aligned_cols=437 Identities=20% Similarity=0.224 Sum_probs=320.7
Q ss_pred cccceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEEEe
Q 001988 170 RYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQL 249 (985)
Q Consensus 170 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 249 (985)
++|++|+|++|.+++..|..|.++++|++|+|++|++++..|+.|+++++|++|+|++|+++ .+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 45556666666665555555666666666666666666555556666666666666666665 44444 5666666666
Q ss_pred cCCcCcc-cCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCC--cEEEecCccC--CCcCCccccCCC-CccEEEcc
Q 001988 250 GFNNLTG-VVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNL--EFLNLGINSF--SGTIPSSITNAS-KLILLEMG 323 (985)
Q Consensus 250 s~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L--~~L~Ls~N~l--~~~~p~~~~~l~-~L~~L~L~ 323 (985)
++|++++ .+|..++++++|++|++++|++++ ..+..+++| +.|++++|++ .+..|..+..+. +...++++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence 6666655 345666666666666666666653 112345555 7777777766 566666666655 34456677
Q ss_pred CcccccccCC-cccCCCCCceEeccCCc-------ccCCCCcccccccccccCcccEEEecCCCCCccCCCCccch--hh
Q 001988 324 SNSFSGFIPS-AIGNLRNLKLFDIFFNN-------LTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNL--SL 393 (985)
Q Consensus 324 ~N~l~~~~p~-~l~~l~~L~~L~L~~N~-------l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l--~~ 393 (985)
+|.+.+.++. .+.++++|+.|+++.|. +.+ ..+.+..+++|+.|++++|.+++..+..+... ..
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~------~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 247 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS------ILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHH------HHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTS
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeec------chhhhccccchhhccccccccCHHHHHHHHHHhhhC
Confidence 7776655443 46677777777777775 221 12246677788888888777765332222110 12
Q ss_pred cccceeccccccccccCCcC-----CCCCCccEEEccCCCCCCCCC-cccccc---ccccceecccccccCCchhhhhhc
Q 001988 394 SLERLNIAFCNISGNIPKAI-----GNLSNLIVLSLGGNNLSGSIP-VTFGGL---QKLQGLDLAFNKLAGSIPDEICLL 464 (985)
Q Consensus 394 ~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~~-~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l 464 (985)
+|++|++++|++++.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.+.. .+..+
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l 323 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKI 323 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSC
T ss_pred cccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhC
Confidence 68899999999988888888 8999999999999999 344 556555 67999999999987542 12578
Q ss_pred cCCCeEEccCCccccccCCCCcCcCcCceEeeccceeee--ecCCCccCccceeEEeecCCcccC-CccccccCCCcccE
Q 001988 465 SRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTF--VIPSTFWNLKDILSFDISSNLLDG-PISLAIGNLKAVVG 541 (985)
Q Consensus 465 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~ls~N~l~~-~~~~~~~~l~~L~~ 541 (985)
++|++|++++|++++.+|..+.++++|++|++++|++++ .+|..|..+++|++|++++|.+.+ +.+..+..+++|+.
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 999999999999999889999999999999999999997 456789999999999999999998 44456889999999
Q ss_pred EEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCcc-cccccccccccccccc
Q 001988 542 IDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVS-FEKLSYLKELNLSFNK 620 (985)
Q Consensus 542 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~ls~N~ 620 (985)
|++++|++++.+|..+. ++|++|+|++|+|+ .+|..+..+++|++|+|++|+|++ +|.. |..+++|++|++++|+
T Consensus 404 L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 404 LNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp EECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCC
Confidence 99999999988887765 79999999999999 688888899999999999999995 5554 9999999999999999
Q ss_pred ccCCCCC
Q 001988 621 LKGEIPR 627 (985)
Q Consensus 621 l~~~~p~ 627 (985)
+++.++.
T Consensus 480 ~~c~c~~ 486 (520)
T 2z7x_B 480 WDCSCPR 486 (520)
T ss_dssp BCCCHHH
T ss_pred CcccCCc
Confidence 9988763
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.4e-48 Score=462.22 Aligned_cols=460 Identities=22% Similarity=0.218 Sum_probs=245.6
Q ss_pred EEEecCCcccccCchhcccccccceecccCCcCCCCCCcccccCCCCcEEEccCcccCCCCccccccCCccceeeecccc
Q 001988 77 TLNLSSFNLQGTIPPEIANLSSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQLSGSLSSFTFNTSSILDIRLSKNK 156 (985)
Q Consensus 77 ~l~L~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~ 156 (985)
.+|+++++++ .+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|++++..|+.+..+++|++|+|++|+
T Consensus 4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred eEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 5788888888 5777665 788888888888887666777888888888888887776656665555555555555555
Q ss_pred ccCCCChhHhhhccccceecccCccccc-cCCcccCCCCCceEEEcccccCCCcccccccccccc--ceEeeccccc--c
Q 001988 157 LSGKLPENICNHLRYLKHLFLRENMFYG-KIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVL--QRISLINNKL--H 231 (985)
Q Consensus 157 l~g~lp~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L--~~L~L~~N~l--~ 231 (985)
++ .+|.. .+++|++|+|++|.+++ .+|..|+++++|++|+|++|++++ ..++.+++| ++|++++|++ .
T Consensus 81 l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 81 LV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred ee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 55 34443 34555555555555544 244555555555555555555543 233444444 5555555555 4
Q ss_pred CCchhhhcCCC-CCCEEEecCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCcc-------C
Q 001988 232 GEIPQEIGYLQ-NLDVLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINS-------F 303 (985)
Q Consensus 232 ~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~-------l 303 (985)
+..|..+..+. +...+++++|++ .+.++...+..+++|+.|++++|. +
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~------------------------~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 209 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKE------------------------FHFILDVSVKTVANLELSNIKCVLEDNKCSYF 209 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSC------------------------CCCCCCCCCTTCSEEEECCEEECCSTTTTHHH
T ss_pred ccccccccccccceEEEEeccCcc------------------------hhhhhhhhhhcccceeecccccccccccccee
Confidence 44444444433 122334444444 333333333334444444444443 3
Q ss_pred CCcCCccccCCCCccEEEccCcccccccCCccc---CCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCC
Q 001988 304 SGTIPSSITNASKLILLEMGSNSFSGFIPSAIG---NLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPL 380 (985)
Q Consensus 304 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~---~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l 380 (985)
.+.+| .+..+++|+.|++++|.+++..+..+. ..++|++|++++|++++..+...+.....++++|+.+++++|.+
T Consensus 210 ~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~ 288 (520)
T 2z7x_B 210 LSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288 (520)
T ss_dssp HHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC
T ss_pred ecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce
Confidence 32222 333344444444444433322111110 01233333333333332111100000013344444444444444
Q ss_pred CccCC-CCccchh--hcccceeccccccccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccC--
Q 001988 381 DGFLP-SSIGNLS--LSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAG-- 455 (985)
Q Consensus 381 ~~~~p-~~~~~l~--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-- 455 (985)
.+| ..+..+. .+|+.|++++|.+.... .+..+++|++|++++|++++..|..|+.+++|++|++++|++++
T Consensus 289 --~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 364 (520)
T 2z7x_B 289 --GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364 (520)
T ss_dssp --CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH
T ss_pred --ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc
Confidence 222 1222220 02444445444443221 11455566666666666666556666666666666666666654
Q ss_pred CchhhhhhccCCCeEEccCCccccccC-CCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCcccCCcccccc
Q 001988 456 SIPDEICLLSRLNELDLNGNKISGSIS-SCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIG 534 (985)
Q Consensus 456 ~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~ 534 (985)
.+|..+..+++|++|+|++|++++.+| ..+..+++|++|++++|++++ ..+..+.
T Consensus 365 ~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~------------------------~~~~~l~ 420 (520)
T 2z7x_B 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD------------------------TIFRCLP 420 (520)
T ss_dssp HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG------------------------GGGGSCC
T ss_pred cchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc------------------------chhhhhc
Confidence 334455555666666666666555233 234455555555555555543 3333332
Q ss_pred CCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCC
Q 001988 535 NLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIP 602 (985)
Q Consensus 535 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 602 (985)
++|+.|+|++|+|+ .+|..+..+++|++|+|++|+|++..+..|..+++|++|+|++|++++..+
T Consensus 421 --~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 421 --PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp --TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred --ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 57778888888887 677777788889999999999885444448888999999999999886533
No 22
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=9.3e-49 Score=424.97 Aligned_cols=249 Identities=26% Similarity=0.415 Sum_probs=214.7
Q ss_pred cCccCCceeeccCceeEEEEEEc------CCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEE
Q 001988 726 DNFAENNIIGIGGFGSVYRARLE------DGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKAL 799 (985)
Q Consensus 726 ~~~~~~~~ig~G~~g~V~~~~~~------~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~l 799 (985)
++|...+.||+|+||+||+|++. +++.||||+++.......++|.+|++++++++|||||+++|+|.+++..+|
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence 56778899999999999999863 578899999987666667889999999999999999999999999999999
Q ss_pred EEeccCCCChHHHhhcC------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEE
Q 001988 800 VLEYMSNGSLEDCLHSS------------NCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHL 867 (985)
Q Consensus 800 v~e~~~~gsL~~~l~~~------------~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl 867 (985)
|||||++|+|.++++.. ...++|.++.+|+.|||+||+|| |+++||||||||+|||+++++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yL---H~~~iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYL---ASQHFVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCSGGGEEECGGGCEEE
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHH---HhCCcccCccCHhhEEECCCCcEEE
Confidence 99999999999999764 24689999999999999999999 7889999999999999999999999
Q ss_pred ecccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchh------------
Q 001988 868 SDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKH------------ 934 (985)
Q Consensus 868 ~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~------------ 934 (985)
+|||+|+...............||++|||||.+.++.++.++|| |++|++++|+++ |+.++.....
T Consensus 170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DV-wS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~~~~ 248 (299)
T 4asz_A 170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDV-WSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRV 248 (299)
T ss_dssp CCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHH-HHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHHTCC
T ss_pred CCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhH-HHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCC
Confidence 99999987654433333445579999999999999999999999 999999999998 6765543211
Q ss_pred hhhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhc
Q 001988 935 FAAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLS 978 (985)
Q Consensus 935 ~~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~ 978 (985)
.+.++.+++++.+++.+||+.||++||||.|+++.|+++.+..+
T Consensus 249 ~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~p 292 (299)
T 4asz_A 249 LQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKASP 292 (299)
T ss_dssp CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSC
T ss_pred CCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcCC
Confidence 12345578899999999999999999999999999999887644
No 23
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=2.7e-48 Score=427.37 Aligned_cols=249 Identities=23% Similarity=0.397 Sum_probs=207.5
Q ss_pred cCccCCceeeccCceeEEEEEEc------CCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEE
Q 001988 726 DNFAENNIIGIGGFGSVYRARLE------DGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKAL 799 (985)
Q Consensus 726 ~~~~~~~~ig~G~~g~V~~~~~~------~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~l 799 (985)
++|...++||+|+||+||+|+++ +++.||||+++.......++|.+|++++++++|||||+++|+|.+++..+|
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence 45677789999999999999864 578899999987766667889999999999999999999999999999999
Q ss_pred EEeccCCCChHHHhhcCC--------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcE
Q 001988 800 VLEYMSNGSLEDCLHSSN--------------CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVA 865 (985)
Q Consensus 800 v~e~~~~gsL~~~l~~~~--------------~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~ 865 (985)
|||||++|+|.++++... ..++|.++.+|+.|||+||+|| |+++||||||||+|||+++++.+
T Consensus 121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yL---H~~~iiHRDLKp~NILl~~~~~~ 197 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYL---AGLHFVHRDLATRNCLVGQGLVV 197 (329)
T ss_dssp EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCCGGGEEEETTTEE
T ss_pred EEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHH---hcCCeecccccHhhEEECCCCcE
Confidence 999999999999997642 3589999999999999999999 78899999999999999999999
Q ss_pred EEecccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcch-----------
Q 001988 866 HLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEK----------- 933 (985)
Q Consensus 866 kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~----------- 933 (985)
||+|||+|+.+...+........+||+.|||||++.+..++.++|| |++|++++|+++ |+.++....
T Consensus 198 Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDv-wS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~g 276 (329)
T 4aoj_A 198 KIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDV-WSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQG 276 (329)
T ss_dssp EECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHH-HHHHHHHHHHHTTSCCTTCSSCHHHHHHHHHHT
T ss_pred EEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccc-cchHHHHHHHHcCCCCCCCCCCHHHHHHHHHcC
Confidence 9999999998754444444455679999999999999999999999 999999999998 676554321
Q ss_pred -hhhhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhc
Q 001988 934 -HFAAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLS 978 (985)
Q Consensus 934 -~~~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~ 978 (985)
..+.++.+++++.+++.+||+.||++||||.||++.|+.+.+..+
T Consensus 277 ~~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~pp 322 (329)
T 4aoj_A 277 RELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAPP 322 (329)
T ss_dssp CCCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSCC
T ss_pred CCCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhCCc
Confidence 122344578899999999999999999999999999999987644
No 24
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-47 Score=414.57 Aligned_cols=249 Identities=24% Similarity=0.405 Sum_probs=207.1
Q ss_pred HhcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCC--cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEE
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQC--ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVL 801 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~--~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~ 801 (985)
..++|...+.||+|+||+||+|++++ .||||+++... ....+.|.+|++++++++|||||+++|+|.+ +..+|||
T Consensus 34 ~~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVm 110 (307)
T 3omv_A 34 EASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVT 110 (307)
T ss_dssp CTTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEE
T ss_pred cHHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEE
Confidence 34677888999999999999999753 59999987543 2345789999999999999999999999865 5689999
Q ss_pred eccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCC
Q 001988 802 EYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDE 881 (985)
Q Consensus 802 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 881 (985)
|||+||+|.++++.....+++.++.+|+.|||+||+|| |+++||||||||+|||+++++.+||+|||+|+.......
T Consensus 111 Ey~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yL---H~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~ 187 (307)
T 3omv_A 111 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYL---HAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSG 187 (307)
T ss_dssp ECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHH---HHTTCBCSCCCSSSEEEETTEEEEECCCSSCBC------
T ss_pred EcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH---HHCCccCCccCHHHEEECCCCcEEEeeccCceecccCCc
Confidence 99999999999988777899999999999999999999 688999999999999999999999999999987654443
Q ss_pred cceeccccccccccccccccc---CccchhhhcccccccchhhhcccccccCcchhh-----------------hhHHHH
Q 001988 882 STMRTQTLATIGYMAPDEIFV---GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF-----------------AAKEQC 941 (985)
Q Consensus 882 ~~~~~~~~gt~~y~aPE~~~~---~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~-----------------~~~~~~ 941 (985)
.......+||+.|||||++.. +.++.++|| |++|++++|+++|+.++...... ..+..+
T Consensus 188 ~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDV-wS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 266 (307)
T 3omv_A 188 SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDV-YSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNC 266 (307)
T ss_dssp ------CCCCTTSCCHHHHHCCSSCCCCHHHHH-HHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTCCCCCSTTSCTTS
T ss_pred ceeecccccCCCccCHHHhhccCCCCCCcHHHh-HhHHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCCcccccccc
Confidence 444456689999999999864 468999999 99999999999998876432110 112357
Q ss_pred HHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhcc
Q 001988 942 LLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLSK 979 (985)
Q Consensus 942 ~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~~ 979 (985)
++++.+++.+||+.||++||||.||++.|+.+++.+++
T Consensus 267 ~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~lpk 304 (307)
T 3omv_A 267 PKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPK 304 (307)
T ss_dssp CHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTCCC
T ss_pred hHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccCCC
Confidence 78899999999999999999999999999999877654
No 25
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=7.9e-48 Score=419.52 Aligned_cols=244 Identities=25% Similarity=0.376 Sum_probs=207.9
Q ss_pred cCccCCceeeccCceeEEEEEEc------CCcEEEEEEeccCCc-chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceE
Q 001988 726 DNFAENNIIGIGGFGSVYRARLE------DGVEIAIKVFHPQCA-STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKA 798 (985)
Q Consensus 726 ~~~~~~~~ig~G~~g~V~~~~~~------~~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~ 798 (985)
++++..+.||+|+||+||+|++. +++.||||+++.... ...++|.+|+.++++++|||||+++|+|.+++..+
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~ 105 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS 105 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEE
Confidence 34566788999999999999863 568899999976533 34578999999999999999999999999999999
Q ss_pred EEEeccCCCChHHHhhcC---------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCC
Q 001988 799 LVLEYMSNGSLEDCLHSS---------------NCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDM 863 (985)
Q Consensus 799 lv~e~~~~gsL~~~l~~~---------------~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~ 863 (985)
||||||++|+|.+++... ...++|.++.+|+.|||+||+|| |+++||||||||+|||+++++
T Consensus 106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yL---H~~~iiHRDLK~~NILl~~~~ 182 (308)
T 4gt4_A 106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYL---SSHHVVHKDLATRNVLVYDKL 182 (308)
T ss_dssp EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCSGGGEEECGGG
T ss_pred EEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHH---HhCCCCCCCccccceEECCCC
Confidence 999999999999999653 23589999999999999999999 789999999999999999999
Q ss_pred cEEEecccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcch---------
Q 001988 864 VAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEK--------- 933 (985)
Q Consensus 864 ~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~--------- 933 (985)
.+||+|||+|+.+...+........+||++|||||.+.++.++.++|| |++|++++|+++ |..++....
T Consensus 183 ~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDV-wSfGvvl~El~t~g~~Pf~~~~~~~~~~~i~ 261 (308)
T 4gt4_A 183 NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDI-WSYGVVLWEVFSYGLQPYCGYSNQDVVEMIR 261 (308)
T ss_dssp CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHH-HHHHHHHHHHHTTTCCTTTTCCHHHHHHHHH
T ss_pred CEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchh-hhHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 999999999987754443334455679999999999999999999999 999999999998 565443321
Q ss_pred ---hhhhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 001988 934 ---HFAAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKI 973 (985)
Q Consensus 934 ---~~~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i 973 (985)
..+.++.|++++.++|.+||+.||++||+|.||+++|+..
T Consensus 262 ~~~~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 262 NRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred cCCCCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 1223456888999999999999999999999999998753
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.3e-46 Score=455.38 Aligned_cols=512 Identities=20% Similarity=0.198 Sum_probs=428.8
Q ss_pred CeEEEEEecCCcccccCchhcccccccceecccCCcCCCCCCcccccCCCCcEEEccCcccCCCCccccccCCccceeee
Q 001988 73 HKVTTLNLSSFNLQGTIPPEIANLSSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQLSGSLSSFTFNTSSILDIRL 152 (985)
Q Consensus 73 ~~v~~l~L~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 152 (985)
..++.|||++|+|++..+.+|.++++|++|||++|+|++..|.+|.+|++|++|+|++|+|++..++++..+++|++|+|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 36899999999999766678999999999999999999877778999999999999999999988899999999999999
Q ss_pred ccccccCCCChhHhhhccccceecccCccccc-cCCcccCCCCCceEEEcccccCCCccccccccccccc----eEeecc
Q 001988 153 SKNKLSGKLPENICNHLRYLKHLFLRENMFYG-KIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQ----RISLIN 227 (985)
Q Consensus 153 s~n~l~g~lp~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~----~L~L~~ 227 (985)
++|+++ .+|+..++++++|++|+|++|.+++ .+|..++++++|++|+|++|++++..|..+..+.+++ .++++.
T Consensus 132 s~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 132 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 999999 5676667899999999999999986 4688999999999999999999998898888877654 688999
Q ss_pred ccccCCchhhhcCCCCCCEEEecCCcCcc-cCcccccCCCCCCEEEccCCcCcc-----cCChhhhhcCCCCcEEEecCc
Q 001988 228 NKLHGEIPQEIGYLQNLDVLQLGFNNLTG-VVPATIFNMSTLKEIFLYNNSLSG-----SLPSRIDLALPNLEFLNLGIN 301 (985)
Q Consensus 228 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~-----~~p~~~~~~l~~L~~L~Ls~N 301 (985)
|.++...+..+ ....++.+++++|.... ..+..+..+..++...+..+.... ......+..+..+..+++..+
T Consensus 211 n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 211 NPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp CCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred CcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 99985544444 45577889999987664 345667788888877765443321 112222334566777777666
Q ss_pred cCCC---cCCccccCCCCccEEEccCcccccccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCC
Q 001988 302 SFSG---TIPSSITNASKLILLEMGSNSFSGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGN 378 (985)
Q Consensus 302 ~l~~---~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N 378 (985)
.... .++..+....+++.+++.+|.+.... .+....+|+.|++.+|++..... ..++.|+.+++++|
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--------~~l~~L~~l~l~~n 359 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT--------LKLKSLKRLTFTSN 359 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC--------CBCTTCCEEEEESC
T ss_pred hhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCc--------ccchhhhhcccccc
Confidence 5443 23455667788999999999887543 36677889999999999887654 24678999999999
Q ss_pred CCCccCCCCccchhhcccceecccccccc--ccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCC
Q 001988 379 PLDGFLPSSIGNLSLSLERLNIAFCNISG--NIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGS 456 (985)
Q Consensus 379 ~l~~~~p~~~~~l~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 456 (985)
.+....+ ...++ +|+.|++++|.+.. ..+..+..+.+|+++++..|.+.. .+..+..+++|+.++++.|.....
T Consensus 360 ~~~~~~~--~~~l~-~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~ 435 (635)
T 4g8a_A 360 KGGNAFS--EVDLP-SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQM 435 (635)
T ss_dssp CSCCBCC--CCBCT-TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEEST
T ss_pred cCCCCcc--ccccc-ccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccc
Confidence 8875432 33455 79999999998863 456667788999999999999874 556788999999999999988765
Q ss_pred ch-hhhhhccCCCeEEccCCccccccCCCCcCcCcCceEeecccee-eeecCCCccCccceeEEeecCCcccCCcccccc
Q 001988 457 IP-DEICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRF-TFVIPSTFWNLKDILSFDISSNLLDGPISLAIG 534 (985)
Q Consensus 457 ~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~ 534 (985)
.+ ..+..+++++.++++.|.+.+..+..+..++.|++|++++|++ .+..|..|..+++|++|++++|+|+++.|..|.
T Consensus 436 ~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~ 515 (635)
T 4g8a_A 436 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 515 (635)
T ss_dssp TSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred ccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHc
Confidence 54 4678899999999999999999999999999999999999985 457889999999999999999999999999999
Q ss_pred CCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcc-cccCeEecCCCcccCC
Q 001988 535 NLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNM-TSLESLDLSNNKISGS 600 (985)
Q Consensus 535 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~ 600 (985)
++++|+.|+|++|+|++..|..|.++++|++|+|++|+|++.+|+.|..+ ++|++|+|++|+++..
T Consensus 516 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 99999999999999999999999999999999999999999999999998 6899999999999853
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.1e-46 Score=451.80 Aligned_cols=448 Identities=20% Similarity=0.214 Sum_probs=333.5
Q ss_pred CCChhHhhhccccceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhc
Q 001988 160 KLPENICNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIG 239 (985)
Q Consensus 160 ~lp~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 239 (985)
.+|..++ ++|++|+|++|.+++..|..|+++++|++|+|++|++++..|+.|+++++|++|+|++|+++ .+|..
T Consensus 45 ~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-- 118 (562)
T 3a79_B 45 HVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC-- 118 (562)
T ss_dssp SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--
T ss_pred cCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--
Confidence 3554442 56677777777777666667777777777777777777666777777777777777777776 55655
Q ss_pred CCCCCCEEEecCCcCcc-cCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCC--cEEEecCccC--CCcCCccccCC
Q 001988 240 YLQNLDVLQLGFNNLTG-VVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNL--EFLNLGINSF--SGTIPSSITNA 314 (985)
Q Consensus 240 ~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L--~~L~Ls~N~l--~~~~p~~~~~l 314 (985)
.+++|++|+|++|++++ .+|..|.++++|++|+|++|++++.. +..+++| +.|++++|++ ++..|..+..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l 194 (562)
T 3a79_B 119 PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD----LLPVAHLHLSCILLDLVSYHIKGGETESLQIP 194 (562)
T ss_dssp CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT----TGGGTTSCEEEEEEEESSCCCCSSSCCEEEEC
T ss_pred ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc----hhhhhhceeeEEEeecccccccccCccccccc
Confidence 67777777777777775 34567777777777777777776421 2234455 8888888877 77777777665
Q ss_pred C-CccEEEccCcccccccCC-cccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCcc---
Q 001988 315 S-KLILLEMGSNSFSGFIPS-AIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIG--- 389 (985)
Q Consensus 315 ~-~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~--- 389 (985)
. ....+++++|.+.+.++. .+..+++|+.+++++|+.... .-.+....+..+++|+.|+++++.+.+.....+.
T Consensus 195 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~ 273 (562)
T 3a79_B 195 NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ-RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF 273 (562)
T ss_dssp CEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH-HHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH
T ss_pred CcceEEEEecCccchhhhhhhcccccceEEEecccccccccc-hHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh
Confidence 4 222557778877765544 456778888888888752100 0011223466777888888887776642111110
Q ss_pred chhhcccceeccccccccccCCcC-----CCCCCccEEEccCCCCCCCCC-cccccc---ccccceecccccccCCchhh
Q 001988 390 NLSLSLERLNIAFCNISGNIPKAI-----GNLSNLIVLSLGGNNLSGSIP-VTFGGL---QKLQGLDLAFNKLAGSIPDE 460 (985)
Q Consensus 390 ~l~~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~~-~~~~~l---~~L~~L~Ls~N~l~~~~p~~ 460 (985)
... +|++|++++|.+++.+|..+ ..++.|+.++++.|.+ .+| ..+..+ .+|+.|++++|.+.....
T Consensus 274 ~~~-~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-- 348 (562)
T 3a79_B 274 WPR-PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC-- 348 (562)
T ss_dssp TTS-SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--
T ss_pred hcc-cccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccC--
Confidence 112 78999999999998888887 7788888888888887 344 334333 579999999999874321
Q ss_pred hhhccCCCeEEccCCccccccCCCCcCcCcCceEeeccceeeee--cCCCccCccceeEEeecCCcccC-CccccccCCC
Q 001988 461 ICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFV--IPSTFWNLKDILSFDISSNLLDG-PISLAIGNLK 537 (985)
Q Consensus 461 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~ls~N~l~~-~~~~~~~~l~ 537 (985)
...+++|++|++++|++++.+|..+.++++|++|++++|+++++ .|..|.++++|++|++++|++++ ..+..+..++
T Consensus 349 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 25789999999999999998999999999999999999999974 45778999999999999999998 5555688999
Q ss_pred cccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCcc-cccccccccccc
Q 001988 538 AVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVS-FEKLSYLKELNL 616 (985)
Q Consensus 538 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~l 616 (985)
+|+.|++++|+|++.+|..+. ++|++|+|++|+|+ .+|..+.++++|++|+|++|+|++ +|.. +..+++|+.|++
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEEC
T ss_pred cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEe
Confidence 999999999999988777664 79999999999999 577777799999999999999995 5555 999999999999
Q ss_pred ccccccCCCCC
Q 001988 617 SFNKLKGEIPR 627 (985)
Q Consensus 617 s~N~l~~~~p~ 627 (985)
++|+++|.+|.
T Consensus 505 ~~N~~~c~c~~ 515 (562)
T 3a79_B 505 HDNPWDCTCPG 515 (562)
T ss_dssp CSCCBCCCHHH
T ss_pred cCCCcCCCcch
Confidence 99999988874
No 28
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=3.4e-46 Score=409.40 Aligned_cols=235 Identities=23% Similarity=0.272 Sum_probs=207.7
Q ss_pred cCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEecc
Q 001988 726 DNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLEYM 804 (985)
Q Consensus 726 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e~~ 804 (985)
+.|+..+.||+|+||+||+|+.. +|+.||||++........+.+.+|++++++++|||||++++++.+++..|||||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence 46888899999999999999975 79999999998665556677899999999999999999999999999999999999
Q ss_pred CCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCCcce
Q 001988 805 SNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDESTM 884 (985)
Q Consensus 805 ~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~ 884 (985)
+||+|.+++... .+++.+...++.||+.||+|| |++|||||||||+|||++.+|.+||+|||+|+.+.... ..
T Consensus 154 ~gg~L~~~l~~~--~l~e~~~~~~~~qi~~aL~yl---H~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~--~~ 226 (346)
T 4fih_A 154 EGGALTDIVTHT--RMNEEQIAAVCLAVLQALSVL---HAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV--PR 226 (346)
T ss_dssp TTEEHHHHHHHS--CCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSS--CC
T ss_pred CCCcHHHHHHcC--CCCHHHHHHHHHHHHHHHHHH---HHCCcccccCCHHHEEECCCCCEEEecCcCceecCCCC--Cc
Confidence 999999999864 589999999999999999999 78999999999999999999999999999999875332 23
Q ss_pred ecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh--------------hhHHHHHHHHHHHHH
Q 001988 885 RTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF--------------AAKEQCLLSIFSLAL 950 (985)
Q Consensus 885 ~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~--------------~~~~~~~~~l~~l~~ 950 (985)
....+||+.|||||++.+..|+.++|+ |++|++++||++|+.++...... .....+++++.+++.
T Consensus 227 ~~~~~GTp~YmAPEvl~~~~y~~~~Di-WSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~ 305 (346)
T 4fih_A 227 RKSLVGTPYWMAPELISRLPYGPEVDI-WSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLD 305 (346)
T ss_dssp BCCCCSCGGGCCHHHHTTCCBCTHHHH-HHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCSCGGGSCHHHHHHHH
T ss_pred ccccccCcCcCCHHHHCCCCCCcHHHH-HHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCCccccCCHHHHHHHH
Confidence 456789999999999999999999999 99999999999998876543211 122345678999999
Q ss_pred HccCCCCCCCCCHHHHHH
Q 001988 951 ECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 951 ~cl~~~P~~RPt~~ev~~ 968 (985)
+||..||++|||+.|+++
T Consensus 306 ~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 306 RLLVRDPAQRATAAELLK 323 (346)
T ss_dssp HHSCSSTTTSCCHHHHTT
T ss_pred HHcCCChhHCcCHHHHhc
Confidence 999999999999999876
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.7e-46 Score=444.95 Aligned_cols=465 Identities=20% Similarity=0.208 Sum_probs=252.6
Q ss_pred EEEEecCCcccccCchhcccccccceecccCCcCCCCCCcccccCCCCcEEEccCcccCCCCccccccCCccceeeeccc
Q 001988 76 TTLNLSSFNLQGTIPPEIANLSSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQLSGSLSSFTFNTSSILDIRLSKN 155 (985)
Q Consensus 76 ~~l~L~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n 155 (985)
..+|++++++++ +|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|++++..|+.+..+++|++|+|++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 689999999994 887765 89999999999999877889999999999999999998776776666666666666666
Q ss_pred cccCCCChhHhhhccccceecccCccccc-cCCcccCCCCCceEEEcccccCCCcccccccccccc--ceEeeccccc--
Q 001988 156 KLSGKLPENICNHLRYLKHLFLRENMFYG-KIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVL--QRISLINNKL-- 230 (985)
Q Consensus 156 ~l~g~lp~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L--~~L~L~~N~l-- 230 (985)
+++ .+|.. .+++|++|+|++|.+++ .+|..|+++++|++|+|++|++++. .+..+++| ++|++++|++
T Consensus 111 ~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 111 RLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp CCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC
T ss_pred cCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc
Confidence 665 45544 45555555655555554 2345555555555555555555532 23333333 5555555555
Q ss_pred cCCchhhhcCCC--CCCEEEecCCcCcccCcc-cccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcC
Q 001988 231 HGEIPQEIGYLQ--NLDVLQLGFNNLTGVVPA-TIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTI 307 (985)
Q Consensus 231 ~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~ 307 (985)
++..|..+..+. .| .++++.|.+.+.++. .+.++++|+.|++++|+..-. .+.+ .
T Consensus 184 ~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--------------------~l~~-~ 241 (562)
T 3a79_B 184 KGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ--------------------RLMT-F 241 (562)
T ss_dssp CSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH--------------------HHHH-H
T ss_pred cccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccc--------------------hHHH-H
Confidence 455555544433 22 334444544443322 223344444444444431000 0110 0
Q ss_pred CccccCCCCccEEEccCccccccc----CCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCcc
Q 001988 308 PSSITNASKLILLEMGSNSFSGFI----PSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGF 383 (985)
Q Consensus 308 p~~~~~l~~L~~L~L~~N~l~~~~----p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~ 383 (985)
...+..+++|+.|+++++.+++.. +..+ ..++|++|++++|++++..+...+.....+++.|+.++++.|.+ .
T Consensus 242 ~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~ 318 (562)
T 3a79_B 242 LSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--L 318 (562)
T ss_dssp HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--S
T ss_pred HHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--e
Confidence 112233333333333333332210 0000 11234444444444432211110000113444555555555554 2
Q ss_pred CC-CCccchhhcccceeccccccccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhh
Q 001988 384 LP-SSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEIC 462 (985)
Q Consensus 384 ~p-~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 462 (985)
+| ..+..+. ...+|++|++++|.+.... .+..+++|++|++++|++++.+|..+.
T Consensus 319 ~p~~~~~~~~----------------------~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~ 374 (562)
T 3a79_B 319 FSKEALYSVF----------------------AEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCS 374 (562)
T ss_dssp SCHHHHHHHH----------------------HTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred cChhhhhhhh----------------------ccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhc
Confidence 23 1111110 0123444455444443211 013444555555555555544444455
Q ss_pred hccCCCeEEccCCccccc--cCCCCcCcCcCceEeeccceeee-ecCCCccCccceeEEeecCCcccCCccccccCCCcc
Q 001988 463 LLSRLNELDLNGNKISGS--ISSCLGNLTSLQYLNLGSNRFTF-VIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAV 539 (985)
Q Consensus 463 ~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L 539 (985)
.+++|++|+|++|++++. +|..+.++++|++|++++|++++ +.+..|..+++|++|++++|++++..+..+. ++|
T Consensus 375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L 452 (562)
T 3a79_B 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKV 452 (562)
T ss_dssp SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTC
T ss_pred ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcC
Confidence 555555555555555431 23345555555555555555555 3333455555666666666665544443332 578
Q ss_pred cEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCC
Q 001988 540 VGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIP 602 (985)
Q Consensus 540 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 602 (985)
+.|+|++|+|+ .+|..+..+++|++|+|++|+|++..+..|..+++|+.|+|++|++++..|
T Consensus 453 ~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 453 KVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp SEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred CEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 88888888887 566666688888888888888885433348888889999999998886544
No 30
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=4.5e-46 Score=412.82 Aligned_cols=259 Identities=21% Similarity=0.326 Sum_probs=219.9
Q ss_pred cCHHHHHHHhcCccCCceeeccCceeEEEEEEc------CCcEEEEEEeccCCc-chHHHHHHHHHHHHhcCC-CCeeeE
Q 001988 716 FSYFELLRATDNFAENNIIGIGGFGSVYRARLE------DGVEIAIKVFHPQCA-STLKSFEAECEVIKNIRH-RNLVKI 787 (985)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l~h-~niv~l 787 (985)
+...+++...++|+..+.||+|+||+||+|++. +++.||||+++.... ...+.|.+|++++++++| ||||++
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEE
Confidence 445666667789999999999999999999864 246799999976543 345679999999999976 899999
Q ss_pred EeeeecC-CceEEEEeccCCCChHHHhhcC---------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCC
Q 001988 788 ISSCSND-DFKALVLEYMSNGSLEDCLHSS---------------NCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCD 851 (985)
Q Consensus 788 ~~~~~~~-~~~~lv~e~~~~gsL~~~l~~~---------------~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrD 851 (985)
+|+|.+. +..+||||||++|+|.++++.. ...+++.++..++.|||+||+|| |+++|||||
T Consensus 134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yL---H~~~iiHRD 210 (353)
T 4ase_A 134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFL---ASRKCIHRD 210 (353)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHH---HHTTCCCSC
T ss_pred EEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhH---hhCCeecCc
Confidence 9999764 5689999999999999999753 23478999999999999999999 789999999
Q ss_pred CCCCCEEEcCCCcEEEecccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccC
Q 001988 852 LKPSNVLLDEDMVAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSG 930 (985)
Q Consensus 852 lk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~ 930 (985)
|||+|||+++++.+||+|||+|+.+............+||+.|||||.+.++.++.++|| |++|++++|+++ |..++.
T Consensus 211 LK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDV-wS~Gv~l~El~t~G~~Pf~ 289 (353)
T 4ase_A 211 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDV-WSFGVLLWEIFSLGASPYP 289 (353)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHH-HHHHHHHHHHTTTSCCSST
T ss_pred cCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccE-eehHHHHHHHHhCCCCCCC
Confidence 999999999999999999999998765555555566789999999999999999999999 999999999997 666554
Q ss_pred cch-------------hhhhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhc
Q 001988 931 EEK-------------HFAAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLS 978 (985)
Q Consensus 931 ~~~-------------~~~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~ 978 (985)
... ....++.+++++.+++.+||+.||++||||.|+++.|+++.+.-.
T Consensus 290 ~~~~~~~~~~~i~~g~~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~~ 350 (353)
T 4ase_A 290 GVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQANA 350 (353)
T ss_dssp TCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHHHhh
Confidence 321 112234577899999999999999999999999999999887644
No 31
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=4.4e-46 Score=409.16 Aligned_cols=237 Identities=21% Similarity=0.285 Sum_probs=200.8
Q ss_pred cCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc--chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEe
Q 001988 726 DNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA--STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLE 802 (985)
Q Consensus 726 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e 802 (985)
++|+..+.||+|+||+||+|+.. +|+.||||++++... ...+.+.+|++++++++|||||++++++++++..|||||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence 68999999999999999999965 799999999976532 345678999999999999999999999999999999999
Q ss_pred ccCCCChHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCC
Q 001988 803 YMSNGSLEDCLHSS-NCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDE 881 (985)
Q Consensus 803 ~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 881 (985)
||+||+|.+++... +..+++.....|+.||+.||+|| |++|||||||||+|||++++|.+||+|||+|+.+.. .
T Consensus 104 y~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~yl---H~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~--~ 178 (350)
T 4b9d_A 104 YCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHV---HDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNS--T 178 (350)
T ss_dssp CCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHH---HHTTCEETTCCGGGEEECTTCCEEECSTTEESCCCH--H
T ss_pred CCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH---HHCCeeeccCCHHHEEECCCCCEEEcccccceeecC--C
Confidence 99999999999765 34578999999999999999999 789999999999999999999999999999987632 1
Q ss_pred cceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh------------hHHHHHHHHHHHH
Q 001988 882 STMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA------------AKEQCLLSIFSLA 949 (985)
Q Consensus 882 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~------------~~~~~~~~l~~l~ 949 (985)
.......+||+.|||||++.+..|+.++|+ |++|++++++++|+.++....... .+..+++++.+++
T Consensus 179 ~~~~~~~~GT~~YmAPE~l~~~~y~~~~Di-wSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~li 257 (350)
T 4b9d_A 179 VELARACIGTPYYLSPEICENKPYNNKSDI-WALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFPPVSLHYSYDLRSLV 257 (350)
T ss_dssp HHHHHHHHSCCTTCCHHHHTTCCCCHHHHH-HHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCCTTSCHHHHHHH
T ss_pred cccccccCCCccccCHHHHCCCCCCcHHHH-HHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCCccCCHHHHHHH
Confidence 222345679999999999999999999999 999999999999998765432111 1233567899999
Q ss_pred HHccCCCCCCCCCHHHHHH
Q 001988 950 LECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 950 ~~cl~~~P~~RPt~~ev~~ 968 (985)
.+||..||++|||+.|+++
T Consensus 258 ~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 258 SQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp HHHTCSSGGGSCCHHHHHT
T ss_pred HHHccCChhHCcCHHHHhc
Confidence 9999999999999999976
No 32
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=5.5e-46 Score=401.54 Aligned_cols=237 Identities=26% Similarity=0.345 Sum_probs=209.1
Q ss_pred cCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC---cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEE
Q 001988 726 DNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC---ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVL 801 (985)
Q Consensus 726 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~---~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~ 801 (985)
++|+..+.||+|+||+||+|+.. +++.||||++.+.. ....+.+.+|++++++++|||||++++++++++..||||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 57999999999999999999965 79999999997542 233567899999999999999999999999999999999
Q ss_pred eccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCC
Q 001988 802 EYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDE 881 (985)
Q Consensus 802 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 881 (985)
|||+||+|.+++...+ .+++.+...++.||+.||+|| |++|||||||||+|||++.++.+||+|||+|+.+.....
T Consensus 112 Ey~~gG~L~~~i~~~~-~l~e~~~~~~~~qi~~al~yl---H~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~ 187 (311)
T 4aw0_A 112 SYAKNGELLKYIRKIG-SFDETCTRFYTAEIVSALEYL---HGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESK 187 (311)
T ss_dssp CCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTT
T ss_pred ecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH---HHCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCC
Confidence 9999999999998764 689999999999999999999 789999999999999999999999999999998865554
Q ss_pred cceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh-----------hHHHHHHHHHHHHH
Q 001988 882 STMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA-----------AKEQCLLSIFSLAL 950 (985)
Q Consensus 882 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~l~~l~~ 950 (985)
.......+||+.|||||++.+..++.++|+ |++|+++++|++|..++....... .++..++++.+++.
T Consensus 188 ~~~~~~~~GTp~YmAPEvl~~~~y~~~~Di-WSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~ 266 (311)
T 4aw0_A 188 QARANSFVGTAQYVSPELLTEKSACKSSDL-WALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLEYDFPEKFFPKARDLVE 266 (311)
T ss_dssp CCCBCCCCSCGGGCCHHHHHHSCBCHHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTCCHHHHHHHH
T ss_pred cccccCcccCcccCCHHHHcCCCCCcHHHH-HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCcccCHHHHHHHH
Confidence 445567789999999999999999999999 999999999999998765432211 12345678999999
Q ss_pred HccCCCCCCCCCHHHHH
Q 001988 951 ECTMESPEKRIDAKDTI 967 (985)
Q Consensus 951 ~cl~~~P~~RPt~~ev~ 967 (985)
+|+..||++|||+.|+.
T Consensus 267 ~lL~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 267 KLLVLDATKRLGCEEME 283 (311)
T ss_dssp HHSCSSGGGSTTSGGGT
T ss_pred HHccCCHhHCcChHHHc
Confidence 99999999999999864
No 33
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=6.2e-46 Score=406.23 Aligned_cols=243 Identities=20% Similarity=0.202 Sum_probs=207.2
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEec
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLEY 803 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e~ 803 (985)
.+.|...++||+|+||+||+|+++ +|+.||||+++.+.. ..+|++++++++|||||++++++.+++..||||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEec
Confidence 356788889999999999999975 799999999976532 24699999999999999999999999999999999
Q ss_pred cCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCC-cEEEecccCceeccCCCCc
Q 001988 804 MSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDM-VAHLSDFGMAKLLSGEDES 882 (985)
Q Consensus 804 ~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~-~~kl~DfGla~~~~~~~~~ 882 (985)
|+||+|.++++..+ .+++.....++.||+.||+|| |+++||||||||+|||++.+| ++||+|||+|+.+......
T Consensus 132 ~~gg~L~~~l~~~~-~l~e~~~~~~~~qi~~aL~yl---H~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~ 207 (336)
T 4g3f_A 132 LEGGSLGQLIKQMG-CLPEDRALYYLGQALEGLEYL---HTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLG 207 (336)
T ss_dssp CTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHH---HTTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC------
T ss_pred cCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH---HHCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcc
Confidence 99999999998764 689999999999999999999 799999999999999999998 6999999999987543221
Q ss_pred ---ceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcch--------------hhhhHHHHHHHH
Q 001988 883 ---TMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEK--------------HFAAKEQCLLSI 945 (985)
Q Consensus 883 ---~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~--------------~~~~~~~~~~~l 945 (985)
......+||+.|||||++.+..++.++|+ |++|+++++|++|+.++.... ....++.+++++
T Consensus 208 ~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~Di-wSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~ 286 (336)
T 4g3f_A 208 KSLLTGDYIPGTETHMAPEVVMGKPCDAKVDI-WSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPPPIREIPPSCAPLT 286 (336)
T ss_dssp ------CCCCCCGGGCCHHHHTTCCCCTHHHH-HHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCCGGGGSCTTSCHHH
T ss_pred cceecCCccccCccccCHHHHCCCCCCcHHHH-HHHHHHHHHHHHCcCCCCCCCHHHHHHHHHcCCCCchhcCccCCHHH
Confidence 12234679999999999999999999999 999999999999987754321 112234577889
Q ss_pred HHHHHHccCCCCCCCCCHHHHHHHHHHhHhhh
Q 001988 946 FSLALECTMESPEKRIDAKDTITRLLKIRDTL 977 (985)
Q Consensus 946 ~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~ 977 (985)
.+++.+||..||++|||+.|+++.+.++.+..
T Consensus 287 ~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~ 318 (336)
T 4g3f_A 287 AQAIQEGLRKEPVHRASAMELRRKVGKALQEV 318 (336)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHccCCHhHCcCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999998877653
No 34
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=6.7e-45 Score=408.96 Aligned_cols=235 Identities=23% Similarity=0.272 Sum_probs=208.3
Q ss_pred cCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEecc
Q 001988 726 DNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLEYM 804 (985)
Q Consensus 726 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e~~ 804 (985)
+.|+..+.||+|+||.||+|+.. +|+.||||++........+.+.+|+++|++++|||||++++++.+++..|||||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCC
Confidence 56899999999999999999975 79999999998776666678999999999999999999999999999999999999
Q ss_pred CCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCCcce
Q 001988 805 SNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDESTM 884 (985)
Q Consensus 805 ~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~ 884 (985)
+||+|.+++... .+++.....|+.||+.||+|| |++|||||||||+|||++.+|.+||+|||+|+.+.... ..
T Consensus 231 ~gG~L~~~i~~~--~l~e~~~~~~~~qil~aL~yl---H~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~--~~ 303 (423)
T 4fie_A 231 EGGALTDIVTHT--RMNEEQIAAVCLAVLQALSVL---HAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV--PR 303 (423)
T ss_dssp TTEEHHHHHHHS--CCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSC--CC
T ss_pred CCCcHHHHHhcc--CCCHHHHHHHHHHHHHHHHHH---HHCCeecccCCHHHEEEcCCCCEEEecCccceECCCCC--cc
Confidence 999999999764 589999999999999999999 78999999999999999999999999999999875332 23
Q ss_pred ecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh--------------hHHHHHHHHHHHHH
Q 001988 885 RTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA--------------AKEQCLLSIFSLAL 950 (985)
Q Consensus 885 ~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~--------------~~~~~~~~l~~l~~ 950 (985)
....+||+.|||||++.+..|+.++|+ |++|++++||++|+.++....... ....+++++.+++.
T Consensus 304 ~~~~~GTp~YmAPEvl~~~~y~~~~Di-WSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~ 382 (423)
T 4fie_A 304 RKSLVGTPYWMAPELISRLPYGPEVDI-WSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLD 382 (423)
T ss_dssp BCCCEECTTTCCHHHHTTCCBCTHHHH-HHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTTSSCHHHHHHHH
T ss_pred ccccccCcCcCCHHHHCCCCCCcHHHH-HHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCcccccCCHHHHHHHH
Confidence 456789999999999999999999999 999999999999998765432111 12235678999999
Q ss_pred HccCCCCCCCCCHHHHHH
Q 001988 951 ECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 951 ~cl~~~P~~RPt~~ev~~ 968 (985)
+||..||++|||+.|+++
T Consensus 383 ~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 383 RLLVRDPAQRATAAELLK 400 (423)
T ss_dssp HHSCSSTTTSCCHHHHTT
T ss_pred HHcCCChhHCcCHHHHhc
Confidence 999999999999999876
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.1e-44 Score=400.07 Aligned_cols=293 Identities=31% Similarity=0.518 Sum_probs=205.0
Q ss_pred cCChhHHHHHHHHHHhcccCCCCcccCCCCCCCCcce--eeeEEEeCCC--CeEEEEEecCCcccc--cCchhccccccc
Q 001988 26 SNISTDQQALLALKDHITYDPTNLLGTNWTSNASICS--WIGIICDVNS--HKVTTLNLSSFNLQG--TIPPEIANLSSL 99 (985)
Q Consensus 26 ~~~~~~~~aLl~~k~~~~~~~~~~~~s~w~~~~~~c~--w~gv~c~~~~--~~v~~l~L~~~~l~g--~~~~~l~~l~~L 99 (985)
.|.++|++||++||+++. ||. .+++ |..+++||. |.||+|+..+ ++|+.|+|++++++| .+|+.++++++|
T Consensus 2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~-W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L 78 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG-NPT-TLSS-WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT-CCG-GGTT-CCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred CCCHHHHHHHHHHHHhcC-Ccc-cccC-CCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCC
Confidence 467999999999999995 776 5666 887889998 9999998765 899999999999999 999999999999
Q ss_pred ceecccC-CcCCCCCCcccccCCCCcEEEccCcccCCCCccccccCCccceeeeccccccCCCChhHhhhccccceeccc
Q 001988 100 KSLDLSH-NKLSSNIPSSIFTMSTLKVLYLMDNQLSGSLSSFTFNTSSILDIRLSKNKLSGKLPENICNHLRYLKHLFLR 178 (985)
Q Consensus 100 ~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~g~lp~~~~~~l~~L~~L~L~ 178 (985)
++|+|++ |.+.+.+|..|+++++|++|+|++|++++.+|..+..+++|++|++++|.+++
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~------------------- 139 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG------------------- 139 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-------------------
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-------------------
Confidence 9999995 99999999999999999999999998887666665555555555555555554
Q ss_pred CccccccCCcccCCCCCceEEEcccccCCCcccccccccc-ccceEeeccccccCCchhhhcCCCCCCEEEecCCcCccc
Q 001988 179 ENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLT-VLQRISLINNKLHGEIPQEIGYLQNLDVLQLGFNNLTGV 257 (985)
Q Consensus 179 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 257 (985)
.+|..++++++|++|+|++|++++.+|..+++++ +|++|++++|++++.+|..++.++ |++|++++|++++.
T Consensus 140 ------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~ 212 (313)
T 1ogq_A 140 ------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD 212 (313)
T ss_dssp ------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEEC
T ss_pred ------cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCc
Confidence 4444455555555555555555544555555544 455555555555555555555554 55555555555555
Q ss_pred CcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccEEEccCcccccccCCcccC
Q 001988 258 VPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMGSNSFSGFIPSAIGN 337 (985)
Q Consensus 258 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 337 (985)
.|..+..+++|++|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|+.|++++|++++.+|.. ++
T Consensus 213 ~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~ 289 (313)
T 1ogq_A 213 ASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN 289 (313)
T ss_dssp CGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TT
T ss_pred CCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cc
Confidence 555555555555555555555544443 234566666666666666666666777777777777777777777665 67
Q ss_pred CCCCceEeccCCc
Q 001988 338 LRNLKLFDIFFNN 350 (985)
Q Consensus 338 l~~L~~L~L~~N~ 350 (985)
+++|+.+++++|+
T Consensus 290 l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 290 LQRFDVSAYANNK 302 (313)
T ss_dssp GGGSCGGGTCSSS
T ss_pred ccccChHHhcCCC
Confidence 7777777777776
No 36
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=9.6e-45 Score=396.50 Aligned_cols=246 Identities=23% Similarity=0.324 Sum_probs=196.7
Q ss_pred cCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCC----ceEEEE
Q 001988 726 DNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDD----FKALVL 801 (985)
Q Consensus 726 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~----~~~lv~ 801 (985)
++|...+.||+|+||+||+|++ +|+.||||+++.... ....++.|+..+.+++|||||+++++|.+++ ..+|||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence 4577788999999999999998 589999999975421 1222345566667889999999999997654 579999
Q ss_pred eccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhc-----CCCCeEeCCCCCCCEEEcCCCcEEEecccCceec
Q 001988 802 EYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFG-----HSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLL 876 (985)
Q Consensus 802 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~-----h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~ 876 (985)
|||++|+|.++++.. .+++..+.+++.|+++||+|||.. |.++||||||||+|||+++++++||+|||+|+..
T Consensus 81 Ey~~~gsL~~~l~~~--~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~ 158 (303)
T 3hmm_A 81 DYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRH 158 (303)
T ss_dssp ECCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEE
T ss_pred cCCCCCcHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccc
Confidence 999999999999865 589999999999999999999742 3569999999999999999999999999999987
Q ss_pred cCCCCcc--eecccccccccccccccccC------ccchhhhcccccccchhhhcccccccCcch---------------
Q 001988 877 SGEDEST--MRTQTLATIGYMAPDEIFVG------ELSLKRWVNDLLPVSLVEVVDKSLLSGEEK--------------- 933 (985)
Q Consensus 877 ~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~--------------- 933 (985)
....... .....+||+.|||||++.+. .++.++|| |++|++++|++++..+.+...
T Consensus 159 ~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DV-wS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~ 237 (303)
T 3hmm_A 159 DSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADI-YAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPS 237 (303)
T ss_dssp ETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHH-HHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCC
T ss_pred cCCCCceeeecccccccccccCHHHhcccccccCCccChhHhh-hhHHHHHHHHHHCCCCCCccccccccchhcccccch
Confidence 5433321 22345799999999998654 47889999 999999999998765432110
Q ss_pred ------------------hhhhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhh
Q 001988 934 ------------------HFAAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDT 976 (985)
Q Consensus 934 ------------------~~~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~ 976 (985)
......++++.+.+++.+||..||++||||.||++.|+++.+.
T Consensus 238 ~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 238 VEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp HHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence 0001123567899999999999999999999999999998865
No 37
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=2.6e-44 Score=383.40 Aligned_cols=234 Identities=23% Similarity=0.321 Sum_probs=190.3
Q ss_pred cCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc---chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEE
Q 001988 726 DNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA---STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVL 801 (985)
Q Consensus 726 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~---~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~ 801 (985)
++|+..+.||+|+||+||+|+.. +|+.||||++++... .....+.+|++++++++|||||++++++.+++..|+||
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 68999999999999999999864 799999999976532 23467899999999999999999999999999999999
Q ss_pred eccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCC
Q 001988 802 EYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDE 881 (985)
Q Consensus 802 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 881 (985)
||+ +|+|.+++...+ .+++.+...++.||+.||+|| |++||+||||||+|||+++++.+||+|||+|+.....
T Consensus 93 Ey~-~g~L~~~l~~~~-~l~e~~~~~~~~qi~~al~yl---H~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~-- 165 (275)
T 3hyh_A 93 EYA-GNELFDYIVQRD-KMSEQEARRFFQQIISAVEYC---HRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDG-- 165 (275)
T ss_dssp ECC-CEEHHHHHHHSC-SCCHHHHHHHHHHHHHHHHHH---HHTTCCCCCCCTTTEEECTTCCEEECCSSCC--------
T ss_pred eCC-CCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH---HHCCcccccCChHHeEECCCCCEEEeecCCCeecCCC--
Confidence 999 689999998764 689999999999999999999 7899999999999999999999999999999876432
Q ss_pred cceecccccccccccccccccCcc-chhhhcccccccchhhhcccccccCcchhhh-----------hHHHHHHHHHHHH
Q 001988 882 STMRTQTLATIGYMAPDEIFVGEL-SLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA-----------AKEQCLLSIFSLA 949 (985)
Q Consensus 882 ~~~~~~~~gt~~y~aPE~~~~~~~-~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~l~~l~ 949 (985)
......+||+.|||||++.+..+ +.++|+ |++|++++++++|+.++....... .++.+++++.+++
T Consensus 166 -~~~~~~~GT~~Y~APE~~~~~~y~~~~~Di-wSlGvily~lltg~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li 243 (275)
T 3hyh_A 166 -NFLKTSCGSPNYAAPEVISGKLYAGPEVDV-WSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPKFLSPGAAGLI 243 (275)
T ss_dssp ----------CTTSCHHHHSSSSCCCTHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHH
T ss_pred -CccCCeeECcccCChhhhcCCCCCCChhhh-HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHH
Confidence 22345689999999999988876 578999 999999999999998765432211 1233567899999
Q ss_pred HHccCCCCCCCCCHHHHHH
Q 001988 950 LECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 950 ~~cl~~~P~~RPt~~ev~~ 968 (985)
.+|+..||++|||+.|+++
T Consensus 244 ~~~L~~dP~~R~s~~eil~ 262 (275)
T 3hyh_A 244 KRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp HHHSCSSGGGSCCHHHHHH
T ss_pred HHHccCChhHCcCHHHHHc
Confidence 9999999999999999986
No 38
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=2e-44 Score=387.90 Aligned_cols=230 Identities=23% Similarity=0.336 Sum_probs=193.2
Q ss_pred cCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC--cchHHHHHHHHHHHHhcCCCCeeeEEeeeec----CCceEEEE
Q 001988 729 AENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC--ASTLKSFEAECEVIKNIRHRNLVKIISSCSN----DDFKALVL 801 (985)
Q Consensus 729 ~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~--~~~~~~~~~E~~il~~l~h~niv~l~~~~~~----~~~~~lv~ 801 (985)
+..++||+|+||+||+|.+. +++.||+|++.... ....+.|.+|++++++++|||||+++++|.+ ++..||||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm 108 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence 55678999999999999875 78999999997542 2345679999999999999999999999865 34579999
Q ss_pred eccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCC--eEeCCCCCCCEEEc-CCCcEEEecccCceeccC
Q 001988 802 EYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTP--IIHCDLKPSNVLLD-EDMVAHLSDFGMAKLLSG 878 (985)
Q Consensus 802 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~--ivHrDlk~~Nill~-~~~~~kl~DfGla~~~~~ 878 (985)
|||+||+|.+++...+ .+++.....|+.||+.||+|| |+++ ||||||||+|||++ ++|.+||+|||+|+....
T Consensus 109 Ey~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~yl---H~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~ 184 (290)
T 3fpq_A 109 ELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKGLQFL---HTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA 184 (290)
T ss_dssp ECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHH---HTSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCT
T ss_pred eCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HHCCCCEEecccChhheeEECCCCCEEEEeCcCCEeCCC
Confidence 9999999999998754 689999999999999999999 5666 99999999999997 489999999999986432
Q ss_pred CCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchh--------------hhhHHHHHHH
Q 001988 879 EDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKH--------------FAAKEQCLLS 944 (985)
Q Consensus 879 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~--------------~~~~~~~~~~ 944 (985)
......+||+.|||||++. +.++.++|+ |++|++++++++|+.++..... ...+..++++
T Consensus 185 ----~~~~~~~GTp~YmAPE~~~-~~y~~~~Di-wSlGvilyelltg~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 258 (290)
T 3fpq_A 185 ----SFAKAVIGTPEFMAPEMYE-EKYDESVDV-YAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPE 258 (290)
T ss_dssp ----TSBEESCSSCCCCCGGGGG-TCCCTHHHH-HHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHH
T ss_pred ----CccCCcccCccccCHHHcC-CCCCcHHHH-HHHHHHHHHHHHCCCCCCCCCcHHHHHHHHHcCCCCCCCCccCCHH
Confidence 2234568999999999875 579999999 9999999999999887643211 1112234567
Q ss_pred HHHHHHHccCCCCCCCCCHHHHHH
Q 001988 945 IFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 945 l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
+.+++.+||..||++|||+.|+++
T Consensus 259 ~~~li~~~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 259 VKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp HHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHccCChhHCcCHHHHhc
Confidence 999999999999999999999875
No 39
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.9e-43 Score=406.97 Aligned_cols=422 Identities=23% Similarity=0.253 Sum_probs=201.9
Q ss_pred cccccceecccCCcCCCCCCcccccCCCCcEEEccCcccCCCCccccccCCccceeeeccccccCCCChhHhhhccccce
Q 001988 95 NLSSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQLSGSLSSFTFNTSSILDIRLSKNKLSGKLPENICNHLRYLKH 174 (985)
Q Consensus 95 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~g~lp~~~~~~l~~L~~ 174 (985)
+.++|++|++++|.+ |.+|++++++++|++|++++|+++|.+|..++++.+|+.++++.|. ..++++
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~------------~~~l~~ 75 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL------------DRQAHE 75 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH------------HHTCSE
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh------------ccCCCE
Confidence 445666666666666 5666666666666666666666666666666666655555555442 145667
Q ss_pred ecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEEEecCCcC
Q 001988 175 LFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGFNNL 254 (985)
Q Consensus 175 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 254 (985)
|++++|.+++ +|.. .++|++|++++|++++ +|+. +++|++|++++|++++ +|.. .++|++|++++|++
T Consensus 76 L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l 143 (454)
T 1jl5_A 76 LELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQL 143 (454)
T ss_dssp EECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCC
T ss_pred EEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCC
Confidence 7777777663 4442 2567777777777775 5543 2567777777777764 2321 15677777777777
Q ss_pred cccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccEEEccCcccccccCCc
Q 001988 255 TGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMGSNSFSGFIPSA 334 (985)
Q Consensus 255 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 334 (985)
++ +| .+.++++|++|++++|++++ +|.. .++|++|++++|++++ +| .++++++|+.|++++|++++ +|..
T Consensus 144 ~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~ 213 (454)
T 1jl5_A 144 EK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL 213 (454)
T ss_dssp SS-CC-CCTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC
T ss_pred CC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC
Confidence 75 55 47777777777777777763 5532 2467777777777665 44 46666666666666666664 2322
Q ss_pred ccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhcccceeccccccccccCCcCC
Q 001988 335 IGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIG 414 (985)
Q Consensus 335 l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~ 414 (985)
. ++|++|++++|+++.++ .+..+++|++|++++|++++ +|..
T Consensus 214 ~---~~L~~L~l~~n~l~~lp-------~~~~l~~L~~L~l~~N~l~~-l~~~--------------------------- 255 (454)
T 1jl5_A 214 P---LSLESIVAGNNILEELP-------ELQNLPFLTTIYADNNLLKT-LPDL--------------------------- 255 (454)
T ss_dssp C---TTCCEEECCSSCCSSCC-------CCTTCTTCCEEECCSSCCSS-CCSC---------------------------
T ss_pred c---CcccEEECcCCcCCccc-------ccCCCCCCCEEECCCCcCCc-cccc---------------------------
Confidence 1 35566666666555332 13455555555555555553 2221
Q ss_pred CCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCceE
Q 001988 415 NLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQYL 494 (985)
Q Consensus 415 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 494 (985)
+++|++|++++|++++ +|.. .++|+.|++++|++++. |. ..++|+.|++++|++++. +.. .++|++|
T Consensus 256 -~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i-~~~---~~~L~~L 322 (454)
T 1jl5_A 256 -PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSL-CDL---PPSLEEL 322 (454)
T ss_dssp -CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEE-CCC---CTTCCEE
T ss_pred -ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCcc-cCC---cCcCCEE
Confidence 1344455555555443 2221 24455555555555531 11 014566666666666542 211 1356666
Q ss_pred eeccceeeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCc--cCchhhcccccceeeeeecce
Q 001988 495 NLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSG--NIPTTLEGLKSLQNISLAYNR 572 (985)
Q Consensus 495 ~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~ 572 (985)
++++|++++ +|.. +++|++|++++|+++++.. .+++|+.|++++|++++ .+|..++.+ +.|.
T Consensus 323 ~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~ 386 (454)
T 1jl5_A 323 NVSNNKLIE-LPAL---PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNS 386 (454)
T ss_dssp ECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC
T ss_pred ECCCCcccc-cccc---CCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCCCChHHHHhh--------hhcc
Confidence 666666665 3332 3567777777777765433 36778888888888887 566666543 3466
Q ss_pred eccchhhhhhcccccCeEecCCCcccC--CCCccccccccccccccccccccCCCCC
Q 001988 573 LEGPIPESFGNMTSLESLDLSNNKISG--SIPVSFEKLSYLKELNLSFNKLKGEIPR 627 (985)
Q Consensus 573 l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~ls~N~l~~~~p~ 627 (985)
+.+.+|.. +++|+.||+++|++++ .+|.. ++.|.+++|.+.+.+|.
T Consensus 387 ~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 387 HLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEF 434 (454)
T ss_dssp ---------------------------------------------------------
T ss_pred cccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCcccc
Confidence 77777764 4788999999999987 56643 56677888988887774
No 40
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=2.2e-44 Score=389.29 Aligned_cols=231 Identities=23% Similarity=0.256 Sum_probs=193.6
Q ss_pred cCccCCceeeccCceeEEEEEEc----CCcEEEEEEeccCCc--chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEE
Q 001988 726 DNFAENNIIGIGGFGSVYRARLE----DGVEIAIKVFHPQCA--STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKAL 799 (985)
Q Consensus 726 ~~~~~~~~ig~G~~g~V~~~~~~----~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~l 799 (985)
++|+..+.||+|+||+||+|+.. +++.||||++++... .....+.+|++++++++|||||++++++++++..|+
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 57999999999999999999862 578899999976522 234568899999999999999999999999999999
Q ss_pred EEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCC
Q 001988 800 VLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGE 879 (985)
Q Consensus 800 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~ 879 (985)
|||||+||+|.+++...+ .+++.+...++.||+.||+|| |++|||||||||+|||++++|.+||+|||+|+.....
T Consensus 104 vmEy~~gg~L~~~l~~~~-~l~e~~~~~~~~qi~~aL~yl---H~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~ 179 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLSKEV-MFTEEDVKFYLAELALALDHL---HSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDH 179 (304)
T ss_dssp EECCCTTCEEHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH---HHTTCCCSSCCGGGEEECTTSCEEEESSEEEEC----
T ss_pred EEEcCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HHCCCcCCCCCHHHeEEcCCCCEEecccccceeccCC
Confidence 999999999999998764 689999999999999999999 7899999999999999999999999999999875432
Q ss_pred CCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh-----------hHHHHHHHHHHH
Q 001988 880 DESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA-----------AKEQCLLSIFSL 948 (985)
Q Consensus 880 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~l~~l 948 (985)
. ......+||+.|||||++.+..++.++|+ |++|++++++++|+.++....... .++.+++++.++
T Consensus 180 ~--~~~~~~~GT~~YmAPE~~~~~~y~~~~Di-wSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~~l 256 (304)
T 3ubd_A 180 E--KKAYSFCGTVEYMAPEVVNRRGHTQSADW-WSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQFLSPEAQSL 256 (304)
T ss_dssp ---CCCCSCCCCGGGCCHHHHHTSCCCTHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHH
T ss_pred C--ccccccccCcccCCHHHhccCCCCCCCcc-cchHHHHHHHHhCCCCCCCcCHHHHHHHHHcCCCCCCCcCCHHHHHH
Confidence 2 22345689999999999999999999999 999999999999998775432211 223467789999
Q ss_pred HHHccCCCCCCCCCH
Q 001988 949 ALECTMESPEKRIDA 963 (985)
Q Consensus 949 ~~~cl~~~P~~RPt~ 963 (985)
+.+||..||++||++
T Consensus 257 i~~~L~~dP~~R~ta 271 (304)
T 3ubd_A 257 LRMLFKRNPANRLGA 271 (304)
T ss_dssp HHHHTCSSGGGSTTC
T ss_pred HHHHcccCHHHCCCC
Confidence 999999999999985
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=8.9e-43 Score=403.98 Aligned_cols=403 Identities=24% Similarity=0.304 Sum_probs=240.5
Q ss_pred CCccceeeeccccccCCCChhHhhhccccceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceE
Q 001988 144 TSSILDIRLSKNKLSGKLPENICNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRI 223 (985)
Q Consensus 144 ~~~L~~L~ls~n~l~g~lp~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 223 (985)
.++|+.|+++.|++ |.+|+.+ +++++|++|++++|.++|.+|++++++++|+.+++++|.. .++++|
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L 76 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHEL 76 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred cccchhhhcccCch-hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEE
Confidence 45666677777766 5666665 5666677777777766666676666666665444443321 345777
Q ss_pred eeccccccCCchhhhcCCCCCCEEEecCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccC
Q 001988 224 SLINNKLHGEIPQEIGYLQNLDVLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSF 303 (985)
Q Consensus 224 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l 303 (985)
++++|++++ +|.. .++|++|++++|++++ +|.. +++|++|++++|++++ +|.. .++|++|++++|++
T Consensus 77 ~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~----~~~L~~L~L~~n~l 143 (454)
T 1jl5_A 77 ELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL----PPLLEYLGVSNNQL 143 (454)
T ss_dssp ECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC----CTTCCEEECCSSCC
T ss_pred EecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC----CCCCCEEECcCCCC
Confidence 777777764 3431 3577777777777776 5543 3677777777777763 3321 25778888888888
Q ss_pred CCcCCccccCCCCccEEEccCcccccccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCcc
Q 001988 304 SGTIPSSITNASKLILLEMGSNSFSGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGF 383 (985)
Q Consensus 304 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~ 383 (985)
++ +| .++++++|++|++++|++++ +|..+ .+|++|++++|++++.+ .+.++++|++|++++|++++
T Consensus 144 ~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l~-------~~~~l~~L~~L~l~~N~l~~- 209 (454)
T 1jl5_A 144 EK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEELP-------ELQNLPFLTAIYADNNSLKK- 209 (454)
T ss_dssp SS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSSCC-------CCTTCTTCCEEECCSSCCSS-
T ss_pred CC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCcCc-------cccCCCCCCEEECCCCcCCc-
Confidence 75 56 47778888888888888775 45433 47888888888877643 25677888888888888875
Q ss_pred CCCCccchhhcccceeccccccccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhh
Q 001988 384 LPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICL 463 (985)
Q Consensus 384 ~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 463 (985)
+|... .+|++|++++|.++ .+| .+..+++|++|++++|++++ +|.. +++|+.|++++|++++ +|..
T Consensus 210 l~~~~----~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~--- 275 (454)
T 1jl5_A 210 LPDLP----LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL--- 275 (454)
T ss_dssp CCCCC----TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---
T ss_pred CCCCc----CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---
Confidence 44332 26888888888887 556 48888888888888888885 3432 3678888888888885 4442
Q ss_pred ccCCCeEEccCCccccccCCCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEE
Q 001988 464 LSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGID 543 (985)
Q Consensus 464 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~ 543 (985)
+++|++|++++|++++. |.. .++|++|++++|+++++ +.. .++|++|++++|+++++.+ . +++|+.|+
T Consensus 276 ~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i-~~~---~~~L~~L~Ls~N~l~~lp~-~---~~~L~~L~ 343 (454)
T 1jl5_A 276 PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSL-CDL---PPSLEELNVSNNKLIELPA-L---PPRLERLI 343 (454)
T ss_dssp CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEE-CCC---CTTCCEEECCSSCCSCCCC-C---CTTCCEEE
T ss_pred cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcc-cCC---cCcCCEEECCCCccccccc-c---CCcCCEEE
Confidence 47788888888888863 221 15788888888888763 221 2478888888888876432 2 57788888
Q ss_pred ccCCccCccCchhhcccccceeeeeecceecc--chhhhhhcccccCeEecCCCcccCCCCccccccccccccccccccc
Q 001988 544 LSRNNLSGNIPTTLEGLKSLQNISLAYNRLEG--PIPESFGNMTSLESLDLSNNKISGSIPVSFEKLSYLKELNLSFNKL 621 (985)
Q Consensus 544 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l 621 (985)
+++|++++ +|. .+++|++|++++|++++ .+|.++.. |+.|++.+.+|.. +++|++|++++|++
T Consensus 344 L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 344 ASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPL 408 (454)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC-------------------------
T ss_pred CCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcC
Confidence 88888874 555 46778888888888887 56665543 2346666777653 47899999999999
Q ss_pred cC--CCCC
Q 001988 622 KG--EIPR 627 (985)
Q Consensus 622 ~~--~~p~ 627 (985)
+| .+|.
T Consensus 409 ~~~~~iP~ 416 (454)
T 1jl5_A 409 REFPDIPE 416 (454)
T ss_dssp --------
T ss_pred Cccccchh
Confidence 98 7775
No 42
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.1e-42 Score=403.96 Aligned_cols=384 Identities=19% Similarity=0.222 Sum_probs=239.0
Q ss_pred EEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEEEecCCcCcccC-cccccCCCCCCEEEccCC
Q 001988 198 ELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGFNNLTGVV-PATIFNMSTLKEIFLYNN 276 (985)
Q Consensus 198 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N 276 (985)
.++.+++.++ .+|. +. ++|++|+|++|++++..|..|+++++|++|+|++|.+.+.+ |..|.++++|++|+|++|
T Consensus 14 ~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 4556666665 4444 22 45566666666665555555666666666666666554333 344555555555555555
Q ss_pred cCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccEEEccCcccccccCCc--ccCCCCCceEeccCCcccCC
Q 001988 277 SLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMGSNSFSGFIPSA--IGNLRNLKLFDIFFNNLTSS 354 (985)
Q Consensus 277 ~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~L~~L~L~~N~l~~~ 354 (985)
+++ +..|..++++++|++|++++|++++..|.. ++.+++|++|++++|+++..
T Consensus 90 ~l~-------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 144 (455)
T 3v47_A 90 QFL-------------------------QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144 (455)
T ss_dssp TTC-------------------------EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC
T ss_pred ccC-------------------------ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCcc
Confidence 554 444444444444444444444444422222 44444444444444444443
Q ss_pred CCcccccccccccCcccEEEecCCCCCccCCCCccchh-hcccceeccccccccccCCc--------CCCCCCccEEEcc
Q 001988 355 TPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLS-LSLERLNIAFCNISGNIPKA--------IGNLSNLIVLSLG 425 (985)
Q Consensus 355 ~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~L~ 425 (985)
.+.. .+.++++|++|++++|++.+..|..+..+. .+|+.|++++|.+.+..+.. +..+++|++|+++
T Consensus 145 ~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 220 (455)
T 3v47_A 145 QPAS----FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220 (455)
T ss_dssp CCCG----GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECT
T ss_pred Cccc----ccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecC
Confidence 2210 133444455555555554444444443331 13444444444444332222 2344556666666
Q ss_pred CCCCCCCCCcccccc---ccccceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCcCc--CcCceEeeccce
Q 001988 426 GNNLSGSIPVTFGGL---QKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNL--TSLQYLNLGSNR 500 (985)
Q Consensus 426 ~N~l~~~~~~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l--~~L~~L~L~~N~ 500 (985)
+|++++..|..|... .+|+.|++++|.+.+.. +..+.+.+..+..+..+ ++|++|++++|+
T Consensus 221 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 286 (455)
T 3v47_A 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS--------------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286 (455)
T ss_dssp TSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC--------------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSC
T ss_pred CCcccccchhhhhccccccceeeEeeccccccccc--------------cchhhhccCcccccccccccCceEEEecCcc
Confidence 666655555554433 55566666655544321 11122222223333333 578888888888
Q ss_pred eeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhh
Q 001988 501 FTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPES 580 (985)
Q Consensus 501 l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 580 (985)
+++..|..|..+++|++|++++|++.+..+..|.++++|+.|+|++|+|++..|..|+++++|++|+|++|++++..|..
T Consensus 287 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 366 (455)
T 3v47_A 287 IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS 366 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhh
Confidence 88888888888888888888888888888888888999999999999998888889999999999999999999888999
Q ss_pred hhcccccCeEecCCCcccCCCCccccccccccccccccccccCCCCCC
Q 001988 581 FGNMTSLESLDLSNNKISGSIPVSFEKLSYLKELNLSFNKLKGEIPRG 628 (985)
Q Consensus 581 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~ 628 (985)
|.++++|++|+|++|+|++..+..|..+++|++|++++|+++|.+|..
T Consensus 367 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred ccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 999999999999999999877777899999999999999999999864
No 43
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=1.4e-43 Score=385.01 Aligned_cols=238 Identities=24% Similarity=0.362 Sum_probs=186.6
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc-chHHHHHHHHHHHHhcCCCCeeeEEeeeecCC-------
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA-STLKSFEAECEVIKNIRHRNLVKIISSCSNDD------- 795 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~------- 795 (985)
.++|+..+.||+|+||+||+|+.+ +|+.||||+++.... ...+.+.+|++++++++|||||++++++.+.+
T Consensus 4 l~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~ 83 (299)
T 4g31_A 4 LTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQP 83 (299)
T ss_dssp HHHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-------
T ss_pred chhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccc
Confidence 356899999999999999999975 799999999975533 34567899999999999999999999986543
Q ss_pred -----ceEEEEeccCCCChHHHhhcCCC--CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEe
Q 001988 796 -----FKALVLEYMSNGSLEDCLHSSNC--ALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLS 868 (985)
Q Consensus 796 -----~~~lv~e~~~~gsL~~~l~~~~~--~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~ 868 (985)
+.|+|||||++|+|.+++..... ..++..++.++.||++||+|| |++|||||||||+|||++.++.+||+
T Consensus 84 ~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~yl---H~~~IiHRDlKp~NILl~~~~~vKl~ 160 (299)
T 4g31_A 84 SSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFL---HSKGLMHRDLKPSNIFFTMDDVVKVG 160 (299)
T ss_dssp ---CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHH---HHTTCCCCCCCGGGEEECTTCCEEEC
T ss_pred cCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHH---HHCcCccccCcHHHeEECCCCcEEEc
Confidence 36899999999999999986532 346677889999999999999 78999999999999999999999999
Q ss_pred cccCceeccCCCCc----------ceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcch-----
Q 001988 869 DFGMAKLLSGEDES----------TMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEK----- 933 (985)
Q Consensus 869 DfGla~~~~~~~~~----------~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~----- 933 (985)
|||+|+.+...... ......+||+.|||||++.+..++.++|+ |++|++++|++++ +.+...
T Consensus 161 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~Di-wSlGvilyell~P--f~~~~~~~~~~ 237 (299)
T 4g31_A 161 DFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDI-FSLGLILFELLYP--FSTQMERVRTL 237 (299)
T ss_dssp CCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHH-HHHHHHHHHHHSC--CSSHHHHHHHH
T ss_pred cCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHH-HHHHHHHHHHccC--CCCccHHHHHH
Confidence 99999987543221 12234579999999999999999999999 9999999999862 111110
Q ss_pred -------hhhhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 934 -------HFAAKEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 934 -------~~~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
..+......+...+++.+||+.||++|||+.|+++
T Consensus 238 ~~~~~~~~p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 279 (299)
T 4g31_A 238 TDVRNLKFPPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIE 279 (299)
T ss_dssp HHHHTTCCCHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHhcCCCCCCCcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 11122334456778999999999999999999986
No 44
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.4e-42 Score=401.15 Aligned_cols=389 Identities=21% Similarity=0.229 Sum_probs=246.5
Q ss_pred eeeeccccccCCCChhHhhhccccceecccCccccccCCcccCCCCCceEEEcccccCCCcc-ccccccccccceEeecc
Q 001988 149 DIRLSKNKLSGKLPENICNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAI-PKEIGNLTVLQRISLIN 227 (985)
Q Consensus 149 ~L~ls~n~l~g~lp~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~ 227 (985)
.++.+++.++ .+|. + .++|++|+|++|.+++..|..|+++++|++|+|++|.+.+.+ |..|+++++|++|+|++
T Consensus 14 ~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 3444555544 4444 2 144555555555555544555555555555555555554433 23455555555555555
Q ss_pred ccccCCchhhhcCCCCCCEEEecCCcCcccCccc--ccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCC
Q 001988 228 NKLHGEIPQEIGYLQNLDVLQLGFNNLTGVVPAT--IFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSG 305 (985)
Q Consensus 228 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~ 305 (985)
|++++..|..|+++++|++|+|++|++++..|.. +.++++|++|+|++|++++..|..+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------------------- 149 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF------------------- 149 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGG-------------------
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccc-------------------
Confidence 5555444555555555555555555555433332 4444455555555554443334333
Q ss_pred cCCccccCCCCccEEEccCcccccccCCcccCC--CCCceEeccCCcccCCCCccc---ccccccccCcccEEEecCCCC
Q 001988 306 TIPSSITNASKLILLEMGSNSFSGFIPSAIGNL--RNLKLFDIFFNNLTSSTPELG---FLSSLANCKKLRYLGLGGNPL 380 (985)
Q Consensus 306 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l--~~L~~L~L~~N~l~~~~~~~~---~~~~l~~l~~L~~L~L~~N~l 380 (985)
+.++++|++|++++|++++..|..+..+ .+|+.|+++.|.+....+... ....+..+++|++|++++|++
T Consensus 150 -----~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 224 (455)
T 3v47_A 150 -----FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224 (455)
T ss_dssp -----GGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCC
T ss_pred -----cCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcc
Confidence 4444455555555555554444444444 445555555555554432210 011123345566666666666
Q ss_pred CccCCCCccchhhcccceeccccccccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhh
Q 001988 381 DGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDE 460 (985)
Q Consensus 381 ~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 460 (985)
.+..|..+... ...++|+.|++++|.+.+... ..+.+.+..+..
T Consensus 225 ~~~~~~~~~~~----------------------~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~ 268 (455)
T 3v47_A 225 KESMAKRFFDA----------------------IAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFT 268 (455)
T ss_dssp CHHHHHHHHHH----------------------TTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTT
T ss_pred cccchhhhhcc----------------------ccccceeeEeecccccccccc--------------chhhhccCcccc
Confidence 55444333221 112667777777776654211 122222222222
Q ss_pred hhh--ccCCCeEEccCCccccccCCCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCcccCCccccccCCCc
Q 001988 461 ICL--LSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKA 538 (985)
Q Consensus 461 ~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~ 538 (985)
+.. .++|+.|++++|++++..|..+..+++|++|++++|++++..|..|.++++|++|++++|++.+..+..+..+++
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 332 367889999999998888888889999999999999999888888999999999999999998888888999999
Q ss_pred ccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCC
Q 001988 539 VVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIP 602 (985)
Q Consensus 539 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 602 (985)
|+.|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++|++++..|
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999999999998889999999999999999999998778888999999999999999998777
No 45
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.9e-40 Score=383.27 Aligned_cols=363 Identities=18% Similarity=0.171 Sum_probs=196.9
Q ss_pred cccCchhcccccccceecccCCcCCCCCCcccccCCCCcEEEccCcccCCCCccccccCCccceeeeccccccCCCChhH
Q 001988 86 QGTIPPEIANLSSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQLSGSLSSFTFNTSSILDIRLSKNKLSGKLPENI 165 (985)
Q Consensus 86 ~g~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~g~lp~~~ 165 (985)
.+..+..++++++|++|+|++|.+++ +| .++.+++|++|+|++|++++. + +..+
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l--------------------- 84 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQN--------------------- 84 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTC---------------------
T ss_pred CcccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccC---------------------
Confidence 34445567777778888888887775 35 577777777777777777753 1 3344
Q ss_pred hhhccccceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCC
Q 001988 166 CNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLD 245 (985)
Q Consensus 166 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 245 (985)
++|++|++++|.+++. | ++++++|++|+|++|++++ +| ++++++|++|++++|++++. + ++.+++|+
T Consensus 85 ----~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~ 151 (457)
T 3bz5_A 85 ----TNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLT 151 (457)
T ss_dssp ----TTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCC
T ss_pred ----CCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCC
Confidence 4444444444444432 2 4444555555555555543 22 44455555555555555432 1 44455555
Q ss_pred EEEecCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccEEEccCc
Q 001988 246 VLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMGSN 325 (985)
Q Consensus 246 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 325 (985)
+|++++|+..+.+ .+..+++|++|++++|++++ +| +..+++|+.|++++|++++. .++.+++|+.|++++|
T Consensus 152 ~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 152 ELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSN 222 (457)
T ss_dssp EEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSS
T ss_pred EEECCCCCccccc--ccccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCC
Confidence 5555555333333 24445555555555555543 33 23445555555555555543 2555566666666666
Q ss_pred ccccccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhcccceecccccc
Q 001988 326 SFSGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNI 405 (985)
Q Consensus 326 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l 405 (985)
++++ +| ++.+++|+.|++++|++++.+ +..+++|+.|++++| +|+.|++++|.+
T Consensus 223 ~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--------~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~ 276 (457)
T 3bz5_A 223 KLTE-ID--VTPLTQLTYFDCSVNPLTELD--------VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQ 276 (457)
T ss_dssp CCSC-CC--CTTCTTCSEEECCSSCCSCCC--------CTTCTTCCEEECTTC---------------CCSCCCCTTCTT
T ss_pred cccc-cC--ccccCCCCEEEeeCCcCCCcC--------HHHCCCCCEEeccCC---------------CCCEEECCCCcc
Confidence 6665 33 556666666666666666543 234556666666554 244566666666
Q ss_pred ccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCCccccccCCCC
Q 001988 406 SGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCL 485 (985)
Q Consensus 406 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~ 485 (985)
.+.+| ++.+++|++|++++|...+.+|. ...+|+.|++++| ++|++|++++|++++. + +
T Consensus 277 ~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l 335 (457)
T 3bz5_A 277 LIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--V 335 (457)
T ss_dssp CCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--C
T ss_pred CCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--c
Confidence 55555 35566666777776666555553 2344555555444 4566666666666653 2 5
Q ss_pred cCcCcCceEeeccceeeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccCchh
Q 001988 486 GNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTT 556 (985)
Q Consensus 486 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 556 (985)
.++++|+.|++++|+|+++ +.|..|++++|.+.|. ..+..|..+++++|+++|.+|..
T Consensus 336 ~~l~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 336 SHNTKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp TTCTTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred ccCCcCcEEECCCCCCCCc--------cccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 5666666666666666541 2333444555555443 23334444555555555555544
No 46
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=9.7e-41 Score=376.71 Aligned_cols=238 Identities=26% Similarity=0.318 Sum_probs=197.3
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc--chHHHHHHHHHHHHhcCCCCeeeEEeeeec------CC
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA--STLKSFEAECEVIKNIRHRNLVKIISSCSN------DD 795 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~h~niv~l~~~~~~------~~ 795 (985)
.++|+..+.||+|+||+||+|++. +|+.||||+++.... ...+.+.+|+++|++++|||||++++++.. .+
T Consensus 53 ~~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~ 132 (398)
T 4b99_A 53 GDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFK 132 (398)
T ss_dssp CSSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCC
T ss_pred CCCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCC
Confidence 367999999999999999999975 799999999976532 335678899999999999999999998754 35
Q ss_pred ceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCcee
Q 001988 796 FKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKL 875 (985)
Q Consensus 796 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~ 875 (985)
..|||||||+ |+|.+++...+ .+++..+..++.||+.||+|| |++|||||||||+|||++.+|.+||+|||+|+.
T Consensus 133 ~~~ivmE~~~-g~L~~~i~~~~-~l~~~~~~~~~~qil~al~yl---H~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~ 207 (398)
T 4b99_A 133 SVYVVLDLME-SDLHQIIHSSQ-PLTLEHVRYFLYQLLRGLKYM---HSAQVIHRDLKPSNLLVNENCELKIGDFGMARG 207 (398)
T ss_dssp CEEEEEECCS-EEHHHHHTSSS-CCCHHHHHHHHHHHHHHHHHH---HHTTCBCCCCCGGGEEECTTCCEEECCCTTCBC
T ss_pred EEEEEEeCCC-CCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HHCcCcCCCcCccccccCCCCCEEEeecceeee
Confidence 7899999995 68999998754 789999999999999999999 789999999999999999999999999999987
Q ss_pred ccCCC--CcceecccccccccccccccccC-ccchhhhcccccccchhhhcccccccCcchhhhhH--------------
Q 001988 876 LSGED--ESTMRTQTLATIGYMAPDEIFVG-ELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAAK-------------- 938 (985)
Q Consensus 876 ~~~~~--~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~~-------------- 938 (985)
+.... ........+||+.|||||++.+. .++.++|+ |++|++++|+++|+.++.........
T Consensus 208 ~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~Di-WSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~~ 286 (398)
T 4b99_A 208 LCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDL-WSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAV 286 (398)
T ss_dssp C-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHH-HHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGGG
T ss_pred cccCccccccccccceeChHhcCHHHhcCCCCCCChhhe-ehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCChHH
Confidence 64322 12234567899999999998875 56899999 99999999999998766432211100
Q ss_pred ----------------------------HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 939 ----------------------------EQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 939 ----------------------------~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
...++++.+++.+||..||.+|||+.|+++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 344 (398)
T 4b99_A 287 IQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALR 344 (398)
T ss_dssp TC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred hhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence 112467889999999999999999999876
No 47
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=3.4e-40 Score=368.44 Aligned_cols=235 Identities=21% Similarity=0.265 Sum_probs=194.0
Q ss_pred HhcCccCCceeeccCceeEEEEEEc----CCcEEEEEEeccCCcchHHHHHHHHHHHHhc-CCCCeeeEEeeeecCCceE
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE----DGVEIAIKVFHPQCASTLKSFEAECEVIKNI-RHRNLVKIISSCSNDDFKA 798 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l-~h~niv~l~~~~~~~~~~~ 798 (985)
..++|+..+.||+|+||+||+|+.+ +++.||||++.... ...++.+|+++++++ +|||||++++++.+.++.|
T Consensus 19 l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~ 96 (361)
T 4f9c_A 19 LSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVV 96 (361)
T ss_dssp GGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEE
T ss_pred ccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEE
Confidence 4578999999999999999999853 56889999987553 345788999999998 6999999999999999999
Q ss_pred EEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCC-CcEEEecccCceecc
Q 001988 799 LVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDED-MVAHLSDFGMAKLLS 877 (985)
Q Consensus 799 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~-~~~kl~DfGla~~~~ 877 (985)
+||||++||+|.+++. .+++.+...++.|++.||+|| |++|||||||||+|||++.+ +.+||+|||+|+...
T Consensus 97 lvmE~~~g~~L~~~~~----~l~~~~~~~~~~qll~al~yl---H~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~ 169 (361)
T 4f9c_A 97 IAMPYLEHESFLDILN----SLSFQEVREYMLNLFKALKRI---HQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTH 169 (361)
T ss_dssp EEEECCCCCCHHHHHT----TCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECT
T ss_pred EEEeCCCcccHHHHHc----CCCHHHHHHHHHHHHHHHHHH---HHCCeEeCcCCHHHeEEeCCCCeEEECcCCCCcccC
Confidence 9999999999999985 478999999999999999999 78999999999999999877 799999999998764
Q ss_pred CCCCc--------------------------ceecccccccccccccccccC-ccchhhhcccccccchhhhcccccccC
Q 001988 878 GEDES--------------------------TMRTQTLATIGYMAPDEIFVG-ELSLKRWVNDLLPVSLVEVVDKSLLSG 930 (985)
Q Consensus 878 ~~~~~--------------------------~~~~~~~gt~~y~aPE~~~~~-~~~~~~dv~~~~g~~~~~i~~~~~~~~ 930 (985)
+.... ......+||+.|||||++.+. .++.+.|+ |++|++++++++|+.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~Di-WSlG~il~ell~G~~Pf~ 248 (361)
T 4f9c_A 170 DTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDM-WSAGVIFLSLLSGRYPFY 248 (361)
T ss_dssp TCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHH-HHHHHHHHHHHHTCSSSS
T ss_pred CccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccch-hhhHHHHHHHHHCCCCCC
Confidence 32211 112345799999999998875 48899999 999999999999986542
Q ss_pred cch-hhhh-----------------------------------------------------------------HHHHHHH
Q 001988 931 EEK-HFAA-----------------------------------------------------------------KEQCLLS 944 (985)
Q Consensus 931 ~~~-~~~~-----------------------------------------------------------------~~~~~~~ 944 (985)
... .... ....+++
T Consensus 249 ~~~~~~~~l~~I~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~is~~ 328 (361)
T 4f9c_A 249 KASDDLTALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWNEVPDE 328 (361)
T ss_dssp CCSSHHHHHHHHHHHHCHHHHHHHHHHTTEEEEESSCCCCCCHHHHHHHHC----------------------CTTCCHH
T ss_pred CCCCHHHHHHHHHHhcCCccchhhhhhccccccccccCcchhhhHHHHhhccccccccccccccccccccccccccCCHH
Confidence 211 0000 0012456
Q ss_pred HHHHHHHccCCCCCCCCCHHHHHH
Q 001988 945 IFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 945 l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
..+++.+|+..||++|||+.|+++
T Consensus 329 a~DLl~~lL~~dP~~R~ta~eaL~ 352 (361)
T 4f9c_A 329 AYDLLDKLLDLNPASRITAEEALL 352 (361)
T ss_dssp HHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred HHHHHHHHCcCChhHCcCHHHHhc
Confidence 789999999999999999999875
No 48
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.7e-39 Score=373.05 Aligned_cols=354 Identities=19% Similarity=0.193 Sum_probs=199.2
Q ss_pred hhccccceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCE
Q 001988 167 NHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDV 246 (985)
Q Consensus 167 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 246 (985)
+++++|++|++++|.+++ +| .++.+++|++|+|++|++++. | ++++++|++|++++|++++. | ++++++|++
T Consensus 39 ~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~ 110 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTY 110 (457)
T ss_dssp HHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred hHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCE
Confidence 445555566665555553 23 455555555555555555542 2 55555555555555555542 2 555555555
Q ss_pred EEecCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccEEEccCcc
Q 001988 247 LQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMGSNS 326 (985)
Q Consensus 247 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 326 (985)
|++++|++++ +| +.++++|++|++++|++++ ++ ...+++|++|++++|+..+.+ .+..+++|+.|++++|+
T Consensus 111 L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 111 LNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp EECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred EECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence 5555555554 22 4555555555555555553 22 223445555555555333333 24444444555555444
Q ss_pred cccccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhcccceeccccccc
Q 001988 327 FSGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNIS 406 (985)
Q Consensus 327 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~ 406 (985)
+++. | ++.+ ++|+.|++++|++++. .+..++ +|+.|++++|+++
T Consensus 182 l~~l-~--l~~l-----------------------------~~L~~L~l~~N~l~~~---~l~~l~-~L~~L~Ls~N~l~ 225 (457)
T 3bz5_A 182 ITEL-D--VSQN-----------------------------KLLNRLNCDTNNITKL---DLNQNI-QLTFLDCSSNKLT 225 (457)
T ss_dssp CCCC-C--CTTC-----------------------------TTCCEEECCSSCCSCC---CCTTCT-TCSEEECCSSCCS
T ss_pred ccee-c--cccC-----------------------------CCCCEEECcCCcCCee---ccccCC-CCCEEECcCCccc
Confidence 4432 2 4444 4455555555544432 133333 4555555555555
Q ss_pred cccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCc
Q 001988 407 GNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLG 486 (985)
Q Consensus 407 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 486 (985)
+ +| +..+++|++|++++|++++.. ++.+++|+.|++++| +|+.|++++|.+.+.+| +.
T Consensus 226 ~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~ 283 (457)
T 3bz5_A 226 E-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AE 283 (457)
T ss_dssp C-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CT
T ss_pred c-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--cc
Confidence 4 23 555666666666666666543 234455555555544 24455666666555555 35
Q ss_pred CcCcCceEeeccceeeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccCchhhcccccceee
Q 001988 487 NLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNI 566 (985)
Q Consensus 487 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 566 (985)
.+++|+.|++++|.+.+.+|. ..++|+.|++++| ++|+.|++++|+|++. + ++.+++|+.|
T Consensus 284 ~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L 344 (457)
T 3bz5_A 284 GCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSL 344 (457)
T ss_dssp TCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEE
T ss_pred ccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEE
Confidence 566667777776665555553 2234444444433 5677777777777764 2 7777788888
Q ss_pred eeecceeccchhhhhhcccccCeEecCCCcccCCCCccccccccccccccccccccCCCCC
Q 001988 567 SLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKLSYLKELNLSFNKLKGEIPR 627 (985)
Q Consensus 567 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~ 627 (985)
++++|+|++ ++.|+.|++++|+++|. ..+..|..+++++|+++|.+|.
T Consensus 345 ~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 345 SCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp ECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred ECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 888888775 24566777888888765 3556677788888888888885
No 49
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2e-38 Score=370.75 Aligned_cols=345 Identities=26% Similarity=0.401 Sum_probs=166.2
Q ss_pred ccccceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEEE
Q 001988 169 LRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQ 248 (985)
Q Consensus 169 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 248 (985)
+++|+.|++++|.+. .+|. +..+++|++|+|++|.+++..| ++++++|++|++++|++++..| ++++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~-~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCc-cCcc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 455666666666555 3442 5555666666666666654332 5555566666666665554333 55555555555
Q ss_pred ecCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccEEEccCcccc
Q 001988 249 LGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMGSNSFS 328 (985)
Q Consensus 249 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 328 (985)
+++|++++..+ +.++++|++|++++|.+++ ++ .+..+++|+.|+++ |.+.
T Consensus 119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--------------------------~~~~l~~L~~L~l~-~~~~ 168 (466)
T 1o6v_A 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS--------------------------ALSGLTSLQQLSFG-NQVT 168 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG--------------------------GGTTCTTCSEEEEE-ESCC
T ss_pred CCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch--------------------------hhccCCcccEeecC-Cccc
Confidence 55555554322 4455555555555555442 22 24444444444443 2333
Q ss_pred cccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhcccceeccccccccc
Q 001988 329 GFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGN 408 (985)
Q Consensus 329 ~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~ 408 (985)
+..+ ++++++|++|++++|+++..+ .+.++++|++|++++|.+.+..| +..++ +|+.|++++|.+++.
T Consensus 169 ~~~~--~~~l~~L~~L~l~~n~l~~~~-------~l~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~ 236 (466)
T 1o6v_A 169 DLKP--LANLTTLERLDISSNKVSDIS-------VLAKLTNLESLIATNNQISDITP--LGILT-NLDELSLNGNQLKDI 236 (466)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCCCG-------GGGGCTTCSEEECCSSCCCCCGG--GGGCT-TCCEEECCSSCCCCC
T ss_pred Cchh--hccCCCCCEEECcCCcCCCCh-------hhccCCCCCEEEecCCccccccc--ccccC-CCCEEECCCCCcccc
Confidence 2221 455555555555555544331 23445555555555555543322 22222 333444444433321
Q ss_pred cCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCcCc
Q 001988 409 IPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNL 488 (985)
Q Consensus 409 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 488 (985)
..+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..+ +..+
T Consensus 237 --~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l 308 (466)
T 1o6v_A 237 --GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNL 308 (466)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGC
T ss_pred --hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCC
Confidence 134444555555555555544333 4444555555555555543322 4444445555555554443322 3444
Q ss_pred CcCceEeeccceeeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeee
Q 001988 489 TSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISL 568 (985)
Q Consensus 489 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 568 (985)
++|++|++++|+++ +..+ +..+++|+.|++++|++++. ..+..+++|++|++
T Consensus 309 ~~L~~L~L~~n~l~------------------------~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l 360 (466)
T 1o6v_A 309 KNLTYLTLYFNNIS------------------------DISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSA 360 (466)
T ss_dssp TTCSEEECCSSCCS------------------------CCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEEC
T ss_pred CCCCEEECcCCcCC------------------------Cchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeC
Confidence 44444444444444 4333 34445555555555555433 24455555555555
Q ss_pred ecceeccchhhhhhcccccCeEecCCCcccC
Q 001988 569 AYNRLEGPIPESFGNMTSLESLDLSNNKISG 599 (985)
Q Consensus 569 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 599 (985)
++|++++..| +..+++|+.|++++|++++
T Consensus 361 ~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 361 GHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 5555555444 5555555555555555554
No 50
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=2.1e-39 Score=384.18 Aligned_cols=237 Identities=19% Similarity=0.247 Sum_probs=208.3
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEec
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLEY 803 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e~ 803 (985)
.++|...+.||+|+||.||+|+.+ +|+.||+|++........+.+.+|+++|++++|||||++++++.+++..||||||
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~ 235 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF 235 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEee
Confidence 368999999999999999999975 7999999999877666677899999999999999999999999999999999999
Q ss_pred cCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCC--CcEEEecccCceeccCCCC
Q 001988 804 MSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDED--MVAHLSDFGMAKLLSGEDE 881 (985)
Q Consensus 804 ~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~--~~~kl~DfGla~~~~~~~~ 881 (985)
|+||+|.+++......+++.+...++.||+.||+|| |+++|+||||||+|||++.+ +.+||+|||+|+.+....
T Consensus 236 ~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~yl---H~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~- 311 (573)
T 3uto_A 236 MSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHM---HENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQ- 311 (573)
T ss_dssp CCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHH---HHTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTS-
T ss_pred cCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH---HHCCeeeccCChhhccccCCCCCCEEEeeccceeEccCCC-
Confidence 999999999987666799999999999999999999 78999999999999999854 899999999999875322
Q ss_pred cceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh---------------hhHHHHHHHHH
Q 001988 882 STMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF---------------AAKEQCLLSIF 946 (985)
Q Consensus 882 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~---------------~~~~~~~~~l~ 946 (985)
.....+||+.|||||++.+..++.++|+ |++|+++++|++|..++...... .....+++++.
T Consensus 312 --~~~~~~GT~~y~APEv~~~~~y~~~~Di-WSlGvilyeml~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~ 388 (573)
T 3uto_A 312 --SVKVTTGTAEFAAPEVAEGKPVGYYTDM-WSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGK 388 (573)
T ss_dssp --EEEEECSSGGGCCHHHHTTCCBCHHHHH-HHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCSGGGTTSCHHHH
T ss_pred --ceeeeEECccccCHHHhCCCCCCcHHHH-HHHHHHHHHHHHCCCCCCCcCHHHHHHHHHhCCCCCCcccccCCCHHHH
Confidence 2345679999999999999999999999 99999999999998766433211 11233567889
Q ss_pred HHHHHccCCCCCCCCCHHHHHH
Q 001988 947 SLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 947 ~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
+++.+||..||.+||++.|+++
T Consensus 389 dli~~~L~~dp~~R~t~~e~l~ 410 (573)
T 3uto_A 389 DFIRKLLLADPNTRMTIHQALE 410 (573)
T ss_dssp HHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHHccCChhHCcCHHHHhc
Confidence 9999999999999999999976
No 51
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.5e-38 Score=367.76 Aligned_cols=346 Identities=25% Similarity=0.370 Sum_probs=248.1
Q ss_pred cCCccceeeeccccccCCCChhHhhhccccceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccce
Q 001988 143 NTSSILDIRLSKNKLSGKLPENICNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQR 222 (985)
Q Consensus 143 ~~~~L~~L~ls~n~l~g~lp~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 222 (985)
.+.+++.|++++|.+. .+|. +..+++|++|+|++|.+++. |. ++++++|++|++++|++++..| ++++++|++
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 4678999999999998 5775 47899999999999999955 44 9999999999999999997655 999999999
Q ss_pred EeeccccccCCchhhhcCCCCCCEEEecCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCcc
Q 001988 223 ISLINNKLHGEIPQEIGYLQNLDVLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINS 302 (985)
Q Consensus 223 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~ 302 (985)
|++++|++++..+ ++.+++|++|++++|.+++ ++ .+..+++|++|+++ |.+.+ ++. +..+++|+.|++++|+
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~-~~~--~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTD-LKP--LANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCC-CGG--GTTCTTCCEEECCSSC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccC-chh--hccCCCCCEEECcCCc
Confidence 9999999996543 9999999999999999986 34 48999999999997 45553 332 4578889999999998
Q ss_pred CCCcCCccccCCCCccEEEccCcccccccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCc
Q 001988 303 FSGTIPSSITNASKLILLEMGSNSFSGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDG 382 (985)
Q Consensus 303 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~ 382 (985)
+++. ..+..+++|+.|++++|.+++..| ++.+++|++|++++|+++..+ .+..+++|++|++++|.+.+
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-------~l~~l~~L~~L~l~~n~l~~ 257 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-------TLASLTNLTDLDLANNQISN 257 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-------GGGGCTTCSEEECCSSCCCC
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-------hhhcCCCCCEEECCCCcccc
Confidence 8754 347778888888888888876655 677778888888887776542 35566667777766666654
Q ss_pred cCCCCccchhhcccceeccccccccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhh
Q 001988 383 FLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEIC 462 (985)
Q Consensus 383 ~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 462 (985)
..| +..+++|++|++++|++++..+ +..+++|+.|++++|++++..+ +.
T Consensus 258 ~~~---------------------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~ 306 (466)
T 1o6v_A 258 LAP---------------------------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS 306 (466)
T ss_dssp CGG---------------------------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG
T ss_pred chh---------------------------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc
Confidence 322 4455666666666666665433 5566666666666666665433 55
Q ss_pred hccCCCeEEccCCccccccCCCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEE
Q 001988 463 LLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGI 542 (985)
Q Consensus 463 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L 542 (985)
.+++|+.|+|++|++++..| +..+++|++|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.|
T Consensus 307 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 380 (466)
T 1o6v_A 307 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 380 (466)
T ss_dssp GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEE
T ss_pred CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEE
Confidence 66666666666666665544 55666666666666666653 234555555555555555554444 4555555555
Q ss_pred EccCCccCc
Q 001988 543 DLSRNNLSG 551 (985)
Q Consensus 543 ~Ls~N~l~~ 551 (985)
++++|.+++
T Consensus 381 ~l~~n~~~~ 389 (466)
T 1o6v_A 381 GLNDQAWTN 389 (466)
T ss_dssp ECCCEEEEC
T ss_pred eccCCcccC
Confidence 555555553
No 52
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=1.8e-39 Score=380.36 Aligned_cols=235 Identities=22% Similarity=0.246 Sum_probs=196.7
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC---cchHHHHHH---HHHHHHhcCCCCeeeEEeeeecCCce
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC---ASTLKSFEA---ECEVIKNIRHRNLVKIISSCSNDDFK 797 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~---~~~~~~~~~---E~~il~~l~h~niv~l~~~~~~~~~~ 797 (985)
.++|...+.||+|+||+||+|+.+ +|+.||||++++.. ......+.+ ++++++.++|||||++++++++.+..
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l 267 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL 267 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence 367999999999999999999975 79999999997542 112233334 45566677899999999999999999
Q ss_pred EEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceecc
Q 001988 798 ALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLS 877 (985)
Q Consensus 798 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~ 877 (985)
|+|||||+||+|.+++...+ .+++.....++.||+.||+|| |++|||||||||+|||++.+|++||+|||+|+.+.
T Consensus 268 ylVmEy~~GGdL~~~l~~~~-~l~E~~a~~y~~qIl~aL~yL---H~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~ 343 (689)
T 3v5w_A 268 SFILDLMNGGDLHYHLSQHG-VFSEADMRFYAAEIILGLEHM---HNRFVVYRDLKPANILLDEHGHVRISDLGLACDFS 343 (689)
T ss_dssp EEEECCCCSCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH---HTTTEECCCCSGGGEEECTTSCEEECCCTTCEECS
T ss_pred EEEEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HHCCccccCCchHHeEEeCCCCEEecccceeeecC
Confidence 99999999999999998764 689999999999999999999 79999999999999999999999999999999875
Q ss_pred CCCCcceeccccccccccccccccc-CccchhhhcccccccchhhhcccccccCcchhh--------------hhHHHHH
Q 001988 878 GEDESTMRTQTLATIGYMAPDEIFV-GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF--------------AAKEQCL 942 (985)
Q Consensus 878 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~--------------~~~~~~~ 942 (985)
... ....+||+.|||||++.. ..++.++|+ |++|+++++|++|..++...... ..+...+
T Consensus 344 ~~~----~~t~~GTp~YmAPEvl~~~~~y~~~vDi-WSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~~~p~~~S 418 (689)
T 3v5w_A 344 KKK----PHASVGTHGYMAPEVLQKGVAYDSSADW-FSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFS 418 (689)
T ss_dssp SCC----CCSCCSCGGGCCHHHHSTTCCCCTHHHH-HHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCCCCCTTSC
T ss_pred CCC----CCCccCCcCccCHHHHhCCCCCCcHHHH-HHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCCCCCCCccCC
Confidence 332 344689999999999975 478999999 99999999999999877542111 1122356
Q ss_pred HHHHHHHHHccCCCCCCCCC-----HHHHHH
Q 001988 943 LSIFSLALECTMESPEKRID-----AKDTIT 968 (985)
Q Consensus 943 ~~l~~l~~~cl~~~P~~RPt-----~~ev~~ 968 (985)
+++.+++.+|+..||.+|++ +.|+.+
T Consensus 419 ~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~ 449 (689)
T 3v5w_A 419 PELRSLLEGLLQRDVNRRLGCLGRGAQEVKE 449 (689)
T ss_dssp HHHHHHHHHHTCSCGGGCTTCSSSTHHHHTT
T ss_pred HHHHHHHHHHccCCHhHCCCCCCCCHHHHhc
Confidence 78999999999999999998 677654
No 53
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=9.2e-39 Score=354.72 Aligned_cols=258 Identities=32% Similarity=0.467 Sum_probs=221.9
Q ss_pred cCHHHHHHHhcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCC
Q 001988 716 FSYFELLRATDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDD 795 (985)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~ 795 (985)
+++.++..++++|...+.||+|+||.||+|+.++++.||||++........+.+.+|++++++++||||+++++++.+.+
T Consensus 29 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 108 (321)
T 2qkw_B 29 VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERN 108 (321)
T ss_dssp -CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTT
T ss_pred ecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCC
Confidence 34445556788999999999999999999998889999999988776667788999999999999999999999999999
Q ss_pred ceEEEEeccCCCChHHHhhcCC---CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccC
Q 001988 796 FKALVLEYMSNGSLEDCLHSSN---CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGM 872 (985)
Q Consensus 796 ~~~lv~e~~~~gsL~~~l~~~~---~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGl 872 (985)
..++||||+++|+|.+++.... ..+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+
T Consensus 109 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~l---H~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~ 185 (321)
T 2qkw_B 109 EMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYL---HTRAIIHRDVKSINILLDENFVPKITDFGI 185 (321)
T ss_dssp CCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCCSTTEEECTTCCEEECCCTT
T ss_pred eEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHh---cCCCeecCCCCHHHEEECCCCCEEEeeccc
Confidence 9999999999999999997653 3589999999999999999999 789999999999999999999999999999
Q ss_pred ceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcch-------------------
Q 001988 873 AKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEK------------------- 933 (985)
Q Consensus 873 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~------------------- 933 (985)
++...............||+.|+|||.+.++.++.++|+ |++|++++++++++.+.....
T Consensus 186 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di-~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (321)
T 2qkw_B 186 SKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDV-YSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQ 264 (321)
T ss_dssp CEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHH-HHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTC
T ss_pred ccccccccccccccccCCCccccCHHHhcCCCCCcccch-HhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhcccccc
Confidence 987643333333344568999999999999999999999 999999999999876443210
Q ss_pred ---------hhhhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhh
Q 001988 934 ---------HFAAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTL 977 (985)
Q Consensus 934 ---------~~~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~ 977 (985)
.......++.++.+++.+||..||++||++.|+++.|+.+.+..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~~ 317 (321)
T 2qkw_B 265 LEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRLQ 317 (321)
T ss_dssp CCSSSSSSCTTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSS
T ss_pred HHHhcChhhccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhcc
Confidence 01123557888999999999999999999999999999987653
No 54
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.4e-38 Score=370.46 Aligned_cols=348 Identities=22% Similarity=0.225 Sum_probs=263.0
Q ss_pred CCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccEEEccCcccccccCCcccCCCCCceEecc
Q 001988 268 LKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMGSNSFSGFIPSAIGNLRNLKLFDIF 347 (985)
Q Consensus 268 L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 347 (985)
-+.+++++++++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|.+++..|..|+++++|++|+|+
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 457888888887 7777543 578888888888888778888888888888888888888778888888888888887
Q ss_pred CCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhcccceeccccccccccCCcCCCCCCccEEEccCC
Q 001988 348 FNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGN 427 (985)
Q Consensus 348 ~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 427 (985)
+|+++.+++. .|.++++|++|+|++|++ ++..+..|..+++|++|+|++|
T Consensus 89 ~n~l~~~~~~-----~~~~l~~L~~L~Ls~n~i-------------------------~~~~~~~~~~l~~L~~L~l~~n 138 (477)
T 2id5_A 89 SNRLKLIPLG-----VFTGLSNLTKLDISENKI-------------------------VILLDYMFQDLYNLKSLEVGDN 138 (477)
T ss_dssp SSCCCSCCTT-----SSTTCTTCCEEECTTSCC-------------------------CEECTTTTTTCTTCCEEEECCT
T ss_pred CCcCCccCcc-----cccCCCCCCEEECCCCcc-------------------------ccCChhHccccccCCEEECCCC
Confidence 7777765543 244555555555555554 4455566677777777777777
Q ss_pred CCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCceEeeccceeeeecCC
Q 001988 428 NLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFVIPS 507 (985)
Q Consensus 428 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 507 (985)
.+++..+..|.++++|+.|+|++|++++..+..+..+++|+.|+|++|.+++..+..|..+++|++|++++|.+.+.+|.
T Consensus 139 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 218 (477)
T 2id5_A 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218 (477)
T ss_dssp TCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT
T ss_pred ccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc
Confidence 77777777777777777777777777766666777788888888888888777777788888888888888776666666
Q ss_pred CccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhccccc
Q 001988 508 TFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSL 587 (985)
Q Consensus 508 ~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 587 (985)
.+....+|++|++++|+++++.+..+..+++|+.|+|++|+|++..+..|.++++|++|+|++|++++..|..|.++++|
T Consensus 219 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 298 (477)
T 2id5_A 219 NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298 (477)
T ss_dssp TTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTC
T ss_pred ccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccC
Confidence 66666688888888888887776778888888888888888888777788888888888888888888888888888888
Q ss_pred CeEecCCCcccCCCCccccccccccccccccccccCCCCCCCCCcccccccccCCccccCCC
Q 001988 588 ESLDLSNNKISGSIPVSFEKLSYLKELNLSFNKLKGEIPRGGPFANFTAESFMGNELLCGLP 649 (985)
Q Consensus 588 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 649 (985)
+.|+|++|+|++..+..|..+++|++|++++|++++.++....+.......+.++...|..|
T Consensus 299 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 299 RVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp CEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred CEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 88888888888777777888888888888888888766532111122233455666666554
No 55
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.7e-38 Score=350.84 Aligned_cols=250 Identities=25% Similarity=0.365 Sum_probs=214.3
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEec
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLEY 803 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e~ 803 (985)
.++|...+.||+|+||.||+|... +++.||+|++........+.+.+|++++++++||||+++++++.+++..++||||
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 88 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEY 88 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEe
Confidence 467889999999999999999975 7899999998766666678899999999999999999999999999999999999
Q ss_pred cCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCCcc
Q 001988 804 MSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDEST 883 (985)
Q Consensus 804 ~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~ 883 (985)
+++|+|.+++......+++.++..++.|+++||+|| |++||+||||||+||+++.++.+||+|||+++.+.......
T Consensus 89 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~l---H~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~ 165 (310)
T 3s95_A 89 IKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYL---HSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQP 165 (310)
T ss_dssp CTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSTTSEEECTTSCEEECCCTTCEECC------
T ss_pred cCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH---HhCCccCCCCCcCeEEECCCCCEEEeecccceecccccccc
Confidence 999999999998767899999999999999999999 78999999999999999999999999999998865332211
Q ss_pred ------------eecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh--------------hh
Q 001988 884 ------------MRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF--------------AA 937 (985)
Q Consensus 884 ------------~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~--------------~~ 937 (985)
......||+.|+|||.+.+..++.++|+ |++|+++++++++..+....... ..
T Consensus 166 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di-~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (310)
T 3s95_A 166 EGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDV-FSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYC 244 (310)
T ss_dssp --------------CCCCSCGGGCCHHHHTTCCCCTHHHH-HHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHHTC
T ss_pred cccccccccccccccccCCCcceeCHHHhcCCCCCcHHHH-HHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccccC
Confidence 1114579999999999999999999999 99999999999887654332100 01
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhc
Q 001988 938 KEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLS 978 (985)
Q Consensus 938 ~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~ 978 (985)
+..+++++.+++.+||+.||++||++.|+++.|+++++...
T Consensus 245 ~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~~~ 285 (310)
T 3s95_A 245 PPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMHLA 285 (310)
T ss_dssp CTTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhcc
Confidence 23356779999999999999999999999999999987654
No 56
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=4.7e-38 Score=349.87 Aligned_cols=260 Identities=35% Similarity=0.498 Sum_probs=222.0
Q ss_pred cccccCHHHHHHHhcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcc-hHHHHHHHHHHHHhcCCCCeeeEEee
Q 001988 712 TIRRFSYFELLRATDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCAS-TLKSFEAECEVIKNIRHRNLVKIISS 790 (985)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~-~~~~~~~E~~il~~l~h~niv~l~~~ 790 (985)
..+.+++.++....++|...+.||+|+||.||+|+..+++.||||++...... ....+.+|++++++++||||++++++
T Consensus 16 ~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~ 95 (326)
T 3uim_A 16 QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF 95 (326)
T ss_dssp CCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEE
T ss_pred ccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEE
Confidence 35788999999999999999999999999999999888999999999765322 23478999999999999999999999
Q ss_pred eecCCceEEEEeccCCCChHHHhhcCC---CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEE
Q 001988 791 CSNDDFKALVLEYMSNGSLEDCLHSSN---CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHL 867 (985)
Q Consensus 791 ~~~~~~~~lv~e~~~~gsL~~~l~~~~---~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl 867 (985)
+...+..++||||+++|+|.+++.... ..+++..+..++.|++.||+|||..+..||+||||||+||+++.++.+||
T Consensus 96 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl 175 (326)
T 3uim_A 96 CMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVV 175 (326)
T ss_dssp ECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEE
T ss_pred EecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEe
Confidence 999999999999999999999998652 34899999999999999999996544459999999999999999999999
Q ss_pred ecccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcch--------------
Q 001988 868 SDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEK-------------- 933 (985)
Q Consensus 868 ~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~-------------- 933 (985)
+|||+++...... ........||+.|+|||.+.+..++.++|+ |++|+++++++++..+.....
T Consensus 176 ~Dfg~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di-~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~ 253 (326)
T 3uim_A 176 GDFGLAKLMDYKD-THVTTAVRGTIGHIAPEYLSTGKSSEKTDV-FGYGVMLLELITGQRAFDLARLANDDDVMLLDWVK 253 (326)
T ss_dssp CCCSSCEECCSSS-SCEECCCCSCGGGCCHHHHHHSEECHHHHH-HHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHT
T ss_pred ccCccccccCccc-ccccccccCCcCccCHHHhccCCCCccccc-hhHHHHHHHHHhCCCcccccccccccchhHHHHHH
Confidence 9999998875333 223344569999999999999999999999 999999999999887653110
Q ss_pred ----------------hhhhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 001988 934 ----------------HFAAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKI 973 (985)
Q Consensus 934 ----------------~~~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i 973 (985)
.......++.++.+++.+||+.||.+||++.|+++.|+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~ 309 (326)
T 3uim_A 254 GLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD 309 (326)
T ss_dssp TTTSSCCSTTSSCTTCTTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTS
T ss_pred HHhhchhhhhhcChhhccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCc
Confidence 0112345678899999999999999999999999999863
No 57
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=9.9e-38 Score=352.75 Aligned_cols=250 Identities=24% Similarity=0.375 Sum_probs=212.3
Q ss_pred hcCccCCceeeccCceeEEEEEEc--------CCcEEEEEEeccCCc-chHHHHHHHHHHHHhc-CCCCeeeEEeeeecC
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE--------DGVEIAIKVFHPQCA-STLKSFEAECEVIKNI-RHRNLVKIISSCSND 794 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~--------~~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l-~h~niv~l~~~~~~~ 794 (985)
.++|...+.||+|+||.||+|+.. ++..||||+++.... ...+.+.+|+++++++ +||||+++++++.+.
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 159 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 159 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence 468899999999999999999852 456799999976533 3456789999999999 899999999999999
Q ss_pred CceEEEEeccCCCChHHHhhcCC---------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEE
Q 001988 795 DFKALVLEYMSNGSLEDCLHSSN---------------CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLL 859 (985)
Q Consensus 795 ~~~~lv~e~~~~gsL~~~l~~~~---------------~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill 859 (985)
+..++||||+++|+|.+++.... ..+++..+..++.||+.||+|| |++||+||||||+||++
T Consensus 160 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~L---H~~~ivHrDlkp~NIll 236 (370)
T 2psq_A 160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYL---ASQKCIHRDLAARNVLV 236 (370)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCCGGGEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHH---HhCCeeccccchhhEEE
Confidence 99999999999999999998653 2478999999999999999999 78999999999999999
Q ss_pred cCCCcEEEecccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhh---
Q 001988 860 DEDMVAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHF--- 935 (985)
Q Consensus 860 ~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~--- 935 (985)
+.++.+||+|||+++.+.............+|+.|+|||.+.+..++.++|+ |++|++++++++ +..++......
T Consensus 237 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dv-wslG~il~ellt~g~~p~~~~~~~~~~ 315 (370)
T 2psq_A 237 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDV-WSFGVLMWEIFTLGGSPYPGIPVEELF 315 (370)
T ss_dssp CTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHH-HHHHHHHHHHHTTSCCSSTTCCGGGHH
T ss_pred CCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHH-HHHHHHHHHHHcCCCCCCCCCCHHHHH
Confidence 9999999999999998754443333344567899999999999999999999 999999999998 66554432211
Q ss_pred ---------hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhc
Q 001988 936 ---------AAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLS 978 (985)
Q Consensus 936 ---------~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~ 978 (985)
..+..++.++.+++.+||..+|.+||++.|+++.|+++.+...
T Consensus 316 ~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il~~~~ 367 (370)
T 2psq_A 316 KLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLTT 367 (370)
T ss_dssp HHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHhcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHhc
Confidence 1223466789999999999999999999999999999886543
No 58
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.9e-37 Score=362.56 Aligned_cols=322 Identities=22% Similarity=0.222 Sum_probs=215.8
Q ss_pred CCEEEecCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccEEEcc
Q 001988 244 LDVLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMG 323 (985)
Q Consensus 244 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 323 (985)
-+.++.+++.++ .+|..+. ++++.|+|++|++++..| ..+..+++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQ-DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECH-hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 357899999998 5776664 589999999999995444 445689999999999999999999999999999999999
Q ss_pred CcccccccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhcccceecccc
Q 001988 324 SNSFSGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFC 403 (985)
Q Consensus 324 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n 403 (985)
+|++++..+..|+++++|++|++++|+++...+. .+.++++|++|++++|.+.+..|..+..++ +|+.|++++|
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n 162 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY-----MFQDLYNLKSLEVGDNDLVYISHRAFSGLN-SLEQLTLEKC 162 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT-----TTTTCTTCCEEEECCTTCCEECTTSSTTCT-TCCEEEEESC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChh-----HccccccCCEEECCCCccceeChhhccCCC-CCCEEECCCC
Confidence 9999988888899999999999999999876543 367778888888888877765555555554 5555555555
Q ss_pred ccccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCCccccccCC
Q 001988 404 NISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISS 483 (985)
Q Consensus 404 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~ 483 (985)
++++..+..|..+++|+.|+|++|.+.+..+..|..+++|+.|++++|.+.+.+|.......+|+.|+|++|++
T Consensus 163 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l------ 236 (477)
T 2id5_A 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL------ 236 (477)
T ss_dssp CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC------
T ss_pred cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc------
Confidence 55544444455555555555555555555455555555555555555554444444433334455555555544
Q ss_pred CCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccCchhhcccccc
Q 001988 484 CLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSL 563 (985)
Q Consensus 484 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 563 (985)
+.+.+..|..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..|..|.++++|
T Consensus 237 ------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 298 (477)
T 2id5_A 237 ------------------TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298 (477)
T ss_dssp ------------------CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTC
T ss_pred ------------------cccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccC
Confidence 44333344444455555555555544444455555555555555555555555566666666
Q ss_pred eeeeeecceeccchhhhhhcccccCeEecCCCcccC
Q 001988 564 QNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISG 599 (985)
Q Consensus 564 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 599 (985)
++|+|++|+|++..+..|..+++|++|+|++|++..
T Consensus 299 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 299 RVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 666666666665555555666666666666666653
No 59
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=3.9e-38 Score=357.40 Aligned_cols=250 Identities=24% Similarity=0.359 Sum_probs=211.8
Q ss_pred HhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcc-hHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEE
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCAS-TLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVL 801 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~-~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~ 801 (985)
..++|...+.||+|+||.||+|++. +++.||||+++..... ....+.+|++++++++||||+++++++...+..++||
T Consensus 112 ~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 191 (377)
T 3cbl_A 112 NHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVM 191 (377)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEE
T ss_pred chHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEE
Confidence 4567888999999999999999986 7899999998755322 3456889999999999999999999999999999999
Q ss_pred eccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCC
Q 001988 802 EYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDE 881 (985)
Q Consensus 802 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 881 (985)
||+++|+|.+++...+..+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++.......
T Consensus 192 e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~L---H~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~ 268 (377)
T 3cbl_A 192 ELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYL---ESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVY 268 (377)
T ss_dssp ECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEE
T ss_pred EcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH---HHCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCce
Confidence 99999999999987666789999999999999999999 789999999999999999999999999999987532211
Q ss_pred cceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchh------------hhhHHHHHHHHHHH
Q 001988 882 STMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKH------------FAAKEQCLLSIFSL 948 (985)
Q Consensus 882 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~------------~~~~~~~~~~l~~l 948 (985)
........+++.|+|||.+..+.++.++|+ |++|++++|+++ +..+...... .+.++.+++++.++
T Consensus 269 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv-wslG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 347 (377)
T 3cbl_A 269 AASGGLRQVPVKWTAPEALNYGRYSSESDV-WSFGILLWETFSLGASPYPNLSNQQTREFVEKGGRLPCPELCPDAVFRL 347 (377)
T ss_dssp ECCSSCCEEEGGGSCHHHHHHCEEEHHHHH-HHHHHHHHHHHTTSCCSSTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHH
T ss_pred eecCCCCCCCcCcCCHhHhccCCCCchhhH-HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHH
Confidence 111112235778999999999999999999 999999999997 6655443211 11233467889999
Q ss_pred HHHccCCCCCCCCCHHHHHHHHHHhHhhh
Q 001988 949 ALECTMESPEKRIDAKDTITRLLKIRDTL 977 (985)
Q Consensus 949 ~~~cl~~~P~~RPt~~ev~~~L~~i~~~~ 977 (985)
+.+||..||++||++.++++.|++++++.
T Consensus 348 i~~cl~~dP~~Rps~~~i~~~L~~i~~~~ 376 (377)
T 3cbl_A 348 MEQCWAYEPGQRPSFSTIYQELQSIRKRH 376 (377)
T ss_dssp HHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCchhCcCHHHHHHHHHHHHhhc
Confidence 99999999999999999999999998764
No 60
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=1.4e-37 Score=340.75 Aligned_cols=236 Identities=25% Similarity=0.328 Sum_probs=207.2
Q ss_pred hcCccCCceeeccCceeEEEEEE-cCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEec
Q 001988 725 TDNFAENNIIGIGGFGSVYRARL-EDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLEY 803 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e~ 803 (985)
.++|...+.||+|+||.||+|.. .+++.||||++........+.+.+|+.++++++||||+++++++...+..++||||
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 98 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY 98 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEEC
Confidence 46799999999999999999985 47899999999766555667889999999999999999999999999999999999
Q ss_pred cCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCCcc
Q 001988 804 MSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDEST 883 (985)
Q Consensus 804 ~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~ 883 (985)
+++|+|.+++... .+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++.......
T Consensus 99 ~~~~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~l---H~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-- 171 (297)
T 3fxz_A 99 LAGGSLTDVVTET--CMDEGQIAAVCRECLQALEFL---HSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS-- 171 (297)
T ss_dssp CTTCBHHHHHHHS--CCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC--
T ss_pred CCCCCHHHHHhhc--CCCHHHHHHHHHHHHHHHHHH---HhCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCccc--
Confidence 9999999999875 588999999999999999999 788999999999999999999999999999988653322
Q ss_pred eecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchh--------------hhhHHHHHHHHHHHH
Q 001988 884 MRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKH--------------FAAKEQCLLSIFSLA 949 (985)
Q Consensus 884 ~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~--------------~~~~~~~~~~l~~l~ 949 (985)
......||+.|+|||.+.+..++.++|+ |++|+++++++++..++..... ...++.+++.+.+++
T Consensus 172 ~~~~~~gt~~y~aPE~~~~~~~~~~~Di-wslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 250 (297)
T 3fxz_A 172 KRSTMVGTPYWMAPEVVTRKAYGPKVDI-WSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFL 250 (297)
T ss_dssp CBCCCCSCGGGCCHHHHHCSCBCTHHHH-HHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSCGGGSCHHHHHHH
T ss_pred ccCCccCCcCccChhhhcCCCCCcHHHH-HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCccccCHHHHHHH
Confidence 2344579999999999999999999999 9999999999999876644321 112344567799999
Q ss_pred HHccCCCCCCCCCHHHHHH
Q 001988 950 LECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 950 ~~cl~~~P~~RPt~~ev~~ 968 (985)
.+||..||++||++.|+++
T Consensus 251 ~~~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 251 NRCLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp HHHSCSSTTTSCCHHHHTT
T ss_pred HHHccCChhHCcCHHHHhh
Confidence 9999999999999999986
No 61
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=6.7e-37 Score=337.51 Aligned_cols=260 Identities=31% Similarity=0.498 Sum_probs=220.3
Q ss_pred CCcccccCHHHHHHHhcCccCC------ceeeccCceeEEEEEEcCCcEEEEEEeccCC----cchHHHHHHHHHHHHhc
Q 001988 710 QPTIRRFSYFELLRATDNFAEN------NIIGIGGFGSVYRARLEDGVEIAIKVFHPQC----ASTLKSFEAECEVIKNI 779 (985)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~------~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~----~~~~~~~~~E~~il~~l 779 (985)
......|++.++..++++|... +.||+|+||.||+|.. +++.||||++.... ....+.+.+|+++++++
T Consensus 9 ~~~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l 87 (307)
T 2nru_A 9 DTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKC 87 (307)
T ss_dssp --CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHC
T ss_pred CCCCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhc
Confidence 3446789999999999999887 8999999999999987 58899999987542 23356789999999999
Q ss_pred CCCCeeeEEeeeecCCceEEEEeccCCCChHHHhhcC--CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCE
Q 001988 780 RHRNLVKIISSCSNDDFKALVLEYMSNGSLEDCLHSS--NCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNV 857 (985)
Q Consensus 780 ~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~--~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Ni 857 (985)
+||||+++++++.+.+..++||||+++|+|.+++... ...+++..+..++.|++.||+|| |++||+||||||+||
T Consensus 88 ~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~l---H~~~i~H~dlkp~Ni 164 (307)
T 2nru_A 88 QHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFL---HENHHIHRDIKSANI 164 (307)
T ss_dssp CCTTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCCGGGE
T ss_pred CCCCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHH---hcCCeecCCCCHHHE
Confidence 9999999999999999999999999999999998743 34689999999999999999999 788999999999999
Q ss_pred EEcCCCcEEEecccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh--
Q 001988 858 LLDEDMVAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF-- 935 (985)
Q Consensus 858 ll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~-- 935 (985)
+++.++.+||+|||+++...............||+.|+|||.+. +.++.++|+ |++|+++++++++..+.......
T Consensus 165 li~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~-~~~~~~~Dv-~slG~il~~l~~g~~p~~~~~~~~~ 242 (307)
T 2nru_A 165 LLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALR-GEITPKSDI-YSFGVVLLEIITGLPAVDEHREPQL 242 (307)
T ss_dssp EECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHT-TEECTHHHH-HHHHHHHHHHHHCCCSBCTTBSSSB
T ss_pred EEcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhc-CCCCccchh-HHHHHHHHHHHHCCCCcccCcchHH
Confidence 99999999999999998875444333344567999999999765 468899999 99999999999987655432110
Q ss_pred ------------------------hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHh
Q 001988 936 ------------------------AAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRD 975 (985)
Q Consensus 936 ------------------------~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~ 975 (985)
..+..+++.+.+++.+||+.+|.+||++.++++.|+++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~ 306 (307)
T 2nru_A 243 LLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 306 (307)
T ss_dssp TTHHHHHHHTTSCCHHHHSCSSCSCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred HHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence 0123466789999999999999999999999999998754
No 62
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=3.9e-38 Score=345.29 Aligned_cols=249 Identities=26% Similarity=0.402 Sum_probs=207.2
Q ss_pred hcCccCCceeeccCceeEEEEEE-----cCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeec--CCce
Q 001988 725 TDNFAENNIIGIGGFGSVYRARL-----EDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSN--DDFK 797 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~-----~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~--~~~~ 797 (985)
.++|+..+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++||||+++++++.. ....
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 88 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 88 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSC
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCce
Confidence 46788999999999999999984 2688999999987766666789999999999999999999999855 3568
Q ss_pred EEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceecc
Q 001988 798 ALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLS 877 (985)
Q Consensus 798 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~ 877 (985)
++||||+++|+|.+++......+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++.+.
T Consensus 89 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~l---H~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~ 165 (295)
T 3ugc_A 89 KLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLP 165 (295)
T ss_dssp EEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCSGGGEEEEETTEEEECCCCSCC---
T ss_pred EEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHH---hcCCcccCCCCHhhEEEcCCCeEEEccCccccccc
Confidence 999999999999999988766799999999999999999999 78999999999999999999999999999998875
Q ss_pred CCCCc-ceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh---------------------
Q 001988 878 GEDES-TMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF--------------------- 935 (985)
Q Consensus 878 ~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~--------------------- 935 (985)
..... .......++..|+|||.+.+..++.++|+ |++|+++++++++..+....+..
T Consensus 166 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (295)
T 3ugc_A 166 QDKEFFKVKEPGESPIFWYAPESLTESKFSVASDV-WSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIEL 244 (295)
T ss_dssp ----------CTTCGGGGCCHHHHHHCCCCHHHHH-HHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHH
T ss_pred CCcceeeeccCCCCccceeCcHHhcCCCCChHHHH-HHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHHH
Confidence 43322 22233457888999999999999999999 99999999999976544332110
Q ss_pred -------hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhh
Q 001988 936 -------AAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTL 977 (985)
Q Consensus 936 -------~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~ 977 (985)
+.+..+++++.+++.+||..||++||++.|++++|+++++.+
T Consensus 245 ~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~l 293 (295)
T 3ugc_A 245 LKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNM 293 (295)
T ss_dssp HHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred HhccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhc
Confidence 112235678999999999999999999999999999998765
No 63
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=2e-37 Score=344.22 Aligned_cols=250 Identities=23% Similarity=0.371 Sum_probs=209.9
Q ss_pred hcCccCCceeeccCceeEEEEEEc----CCcEEEEEEeccCC-cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE----DGVEIAIKVFHPQC-ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKAL 799 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vAvK~~~~~~-~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~l 799 (985)
.++|...+.||+|+||.||+|++. .+..||||+++... ....+.+.+|++++++++||||+++++++.+.+..++
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 127 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMI 127 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEE
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEE
Confidence 357888899999999999999974 45569999998653 3345678999999999999999999999999999999
Q ss_pred EEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCC
Q 001988 800 VLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGE 879 (985)
Q Consensus 800 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~ 879 (985)
||||+++|+|.+++......+++..+..++.|++.||+|| |+.||+||||||+||+++.++.+||+|||+++.+...
T Consensus 128 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~L---H~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 204 (325)
T 3kul_A 128 VTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYL---SDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDD 204 (325)
T ss_dssp EEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEECTTCCEEECCCSSCEECC--
T ss_pred EeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH---HHCCeeCCCCCcceEEECCCCCEEECCCCcccccccC
Confidence 9999999999999987766899999999999999999999 7899999999999999999999999999999987543
Q ss_pred CCc-ceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhh------------hhHHHHHHHH
Q 001988 880 DES-TMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHF------------AAKEQCLLSI 945 (985)
Q Consensus 880 ~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~------------~~~~~~~~~l 945 (985)
... .......+|+.|+|||.+.+..++.++|+ |++|++++++++ +..++...... +.+..+++++
T Consensus 205 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di-~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 283 (325)
T 3kul_A 205 PDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDV-WSFGVVMWEVLAYGERPYWNMTNRDVISSVEEGYRLPAPMGCPHAL 283 (325)
T ss_dssp --CCEECC---CCGGGSCHHHHHHCEECHHHHH-HHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHH
T ss_pred ccceeeccCCCCcccccCHhHhcCCCCCcHHHH-HHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCCCCCCCCcCHHH
Confidence 322 12233456889999999999999999999 999999999998 66655332211 1123457789
Q ss_pred HHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhc
Q 001988 946 FSLALECTMESPEKRIDAKDTITRLLKIRDTLS 978 (985)
Q Consensus 946 ~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~ 978 (985)
.+++.+||..||.+||++.|+++.|+.+.+...
T Consensus 284 ~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~~ 316 (325)
T 3kul_A 284 HQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPE 316 (325)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHccCChhhCcCHHHHHHHHHHHHhCcc
Confidence 999999999999999999999999999887544
No 64
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=1.5e-37 Score=335.74 Aligned_cols=246 Identities=24% Similarity=0.354 Sum_probs=212.1
Q ss_pred hcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEecc
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLEYM 804 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e~~ 804 (985)
.++|+..+.||+|+||.||+|+..+++.||+|++..... ..+.+.+|++++++++||||+++++++.+.+..++||||+
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 87 (269)
T 4hcu_A 9 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM 87 (269)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred hhhceeeheecCCCccEEEEEEecCCCeEEEEEeccccc-CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeC
Confidence 467888999999999999999998899999999986533 3467899999999999999999999999999999999999
Q ss_pred CCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCCcce
Q 001988 805 SNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDESTM 884 (985)
Q Consensus 805 ~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~ 884 (985)
++|+|.+++......+++..+..++.|+++||+|| |++||+||||||+||+++.++.+||+|||+++...... ...
T Consensus 88 ~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~l---H~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~ 163 (269)
T 4hcu_A 88 EHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYL---EEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-YTS 163 (269)
T ss_dssp TTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHH-HHS
T ss_pred CCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHH---HhCCeecCCcchheEEEcCCCCEEeccccccccccccc-ccc
Confidence 99999999987777799999999999999999999 78999999999999999999999999999998764221 122
Q ss_pred ecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhhhh------------HHHHHHHHHHHHHH
Q 001988 885 RTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHFAA------------KEQCLLSIFSLALE 951 (985)
Q Consensus 885 ~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~~~------------~~~~~~~l~~l~~~ 951 (985)
.....+|+.|+|||.+....++.++|+ |++|++++++++ +..+......... +..+++++.+++.+
T Consensus 164 ~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~~l~~ll~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 242 (269)
T 4hcu_A 164 STGTKFPVKWASPEVFSFSRYSSKSDV-WSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNH 242 (269)
T ss_dssp TTSTTCCGGGCCHHHHHHCCCCHHHHH-HHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHH
T ss_pred ccCcccccccCCHHHhcCCCCCchhhh-HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhcCccCCCCCcCCHHHHHHHHH
Confidence 233457889999999999999999999 999999999998 6765543322111 12246779999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhHhh
Q 001988 952 CTMESPEKRIDAKDTITRLLKIRDT 976 (985)
Q Consensus 952 cl~~~P~~RPt~~ev~~~L~~i~~~ 976 (985)
||..+|.+||++.|+++.|+++.+.
T Consensus 243 ~l~~~p~~Rps~~~ll~~l~~l~~~ 267 (269)
T 4hcu_A 243 CWRERPEDRPAFSRLLRQLAEIAES 267 (269)
T ss_dssp HTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HccCCcccCcCHHHHHHHHHHHHHc
Confidence 9999999999999999999998763
No 65
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=2e-37 Score=343.94 Aligned_cols=244 Identities=23% Similarity=0.292 Sum_probs=205.3
Q ss_pred hcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCC----ceEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDD----FKALV 800 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~----~~~lv 800 (985)
.++|+..+.||+|+||.||+|+.. ++.||||++.... .......+|+.++++++||||+++++++.... ..++|
T Consensus 23 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv 100 (322)
T 3soc_A 23 SMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQD-KQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLI 100 (322)
T ss_dssp TEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEE
T ss_pred hhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCc-hHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEE
Confidence 468899999999999999999886 7999999997542 33445677999999999999999999998754 36999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCC----------CeEeCCCCCCCEEEcCCCcEEEecc
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHST----------PIIHCDLKPSNVLLDEDMVAHLSDF 870 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~----------~ivHrDlk~~Nill~~~~~~kl~Df 870 (985)
|||+++|+|.+++... .+++..+..++.|++.||+|| |+. ||+||||||+||+++.++.+||+||
T Consensus 101 ~e~~~~g~L~~~l~~~--~~~~~~~~~i~~qi~~al~~L---H~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DF 175 (322)
T 3soc_A 101 TAFHEKGSLSDFLKAN--VVSWNELCHIAETMARGLAYL---HEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADF 175 (322)
T ss_dssp EECCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHH---TCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCC
T ss_pred EecCCCCCHHHHHHhc--CCCHHHHHHHHHHHHHHHHHH---HhhccccccccCCCEEeCCCChHhEEECCCCeEEEccC
Confidence 9999999999999875 489999999999999999999 677 9999999999999999999999999
Q ss_pred cCceeccCCCCcceeccccccccccccccccc-----CccchhhhcccccccchhhhcccccccCcchh-----------
Q 001988 871 GMAKLLSGEDESTMRTQTLATIGYMAPDEIFV-----GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKH----------- 934 (985)
Q Consensus 871 Gla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~----------- 934 (985)
|+++.+.............||+.|+|||.+.+ ..++.++|+ |++|+++++++++..++.....
T Consensus 176 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~Di-wslG~il~el~tg~~pf~~~~~~~~~~~~~~~~ 254 (322)
T 3soc_A 176 GLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDM-YAMGLVLWELASRCTAADGPVDEYMLPFEEEIG 254 (322)
T ss_dssp TTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHH-HHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHC
T ss_pred CcccccccccCccccccCccCccccCHhhcccccccCcCCCccchh-HHHHHHHHHHHhCCCCCCCCcchhccchhhhhc
Confidence 99988765444334445679999999999876 466778899 9999999999998765432100
Q ss_pred ----h-------------------hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhh
Q 001988 935 ----F-------------------AAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDT 976 (985)
Q Consensus 935 ----~-------------------~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~ 976 (985)
. .....+++++.+++.+||..||++|||+.|+++.|+++++.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~ 319 (322)
T 3soc_A 255 QHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRL 319 (322)
T ss_dssp SSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred cCCchhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 0 01123456799999999999999999999999999999875
No 66
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=2.5e-37 Score=333.76 Aligned_cols=246 Identities=24% Similarity=0.344 Sum_probs=212.2
Q ss_pred hcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEecc
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLEYM 804 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e~~ 804 (985)
.++|+..+.||+|+||.||+|+.+++..||+|+++.... ..+++.+|++++++++||||+++++++.+.+..++||||+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYI 85 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEcc
Confidence 467889999999999999999998888999999986533 3467899999999999999999999999999999999999
Q ss_pred CCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCCcce
Q 001988 805 SNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDESTM 884 (985)
Q Consensus 805 ~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~ 884 (985)
++++|.+++...+..+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++...... ...
T Consensus 86 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~l---H~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~-~~~ 161 (268)
T 3sxs_A 86 SNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFL---ESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQ-YVS 161 (268)
T ss_dssp TTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHH---HHTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTC-EEE
T ss_pred CCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH---HHCCeecCCcCcceEEECCCCCEEEccCccceecchhh-hhc
Confidence 99999999987766789999999999999999999 78999999999999999999999999999998764332 222
Q ss_pred ecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhhh------------hHHHHHHHHHHHHHH
Q 001988 885 RTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHFA------------AKEQCLLSIFSLALE 951 (985)
Q Consensus 885 ~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~~------------~~~~~~~~l~~l~~~ 951 (985)
.....+|+.|+|||.+.+..++.++|+ |++|++++++++ +..+........ .+..+++++.+++.+
T Consensus 162 ~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ 240 (268)
T 3sxs_A 162 SVGTKFPVKWSAPEVFHYFKYSSKSDV-WAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQGHRLYRPHLASDTIYQIMYS 240 (268)
T ss_dssp CCSCCCCGGGCCHHHHHHSEEETTHHH-HHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHH
T ss_pred ccCCCcCcccCCHHHHhccCCchhhhh-HHHHHHHHHHHcCCCCCccccChHHHHHHHHcCCCCCCCCcChHHHHHHHHH
Confidence 334457788999999999999999999 999999999998 776654322111 122246779999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhHhh
Q 001988 952 CTMESPEKRIDAKDTITRLLKIRDT 976 (985)
Q Consensus 952 cl~~~P~~RPt~~ev~~~L~~i~~~ 976 (985)
||..+|.+||++.|+++.|+.++++
T Consensus 241 ~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (268)
T 3sxs_A 241 CWHELPEKRPTFQQLLSSIEPLREK 265 (268)
T ss_dssp TTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred HcCCChhhCcCHHHHHHHHHHhhhc
Confidence 9999999999999999999998764
No 67
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=1.9e-37 Score=349.92 Aligned_cols=261 Identities=21% Similarity=0.316 Sum_probs=217.6
Q ss_pred cccCHHHHHHHhcCccCCceeeccCceeEEEEEE------cCCcEEEEEEeccCCc-chHHHHHHHHHHHHhc-CCCCee
Q 001988 714 RRFSYFELLRATDNFAENNIIGIGGFGSVYRARL------EDGVEIAIKVFHPQCA-STLKSFEAECEVIKNI-RHRNLV 785 (985)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l-~h~niv 785 (985)
..+...++....++|...+.||+|+||.||+|++ .+++.||||+++.... ...+.+.+|+++++++ +||||+
T Consensus 10 ~~~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv 89 (359)
T 3vhe_A 10 LPYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVV 89 (359)
T ss_dssp SCCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred CCCCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCccee
Confidence 3455666667789999999999999999999974 2568899999986533 3356789999999999 789999
Q ss_pred eEEeeeecCC-ceEEEEeccCCCChHHHhhcCCC----------------------------------------------
Q 001988 786 KIISSCSNDD-FKALVLEYMSNGSLEDCLHSSNC---------------------------------------------- 818 (985)
Q Consensus 786 ~l~~~~~~~~-~~~lv~e~~~~gsL~~~l~~~~~---------------------------------------------- 818 (985)
++++++.+.+ ..++||||+++|+|.+++.....
T Consensus 90 ~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (359)
T 3vhe_A 90 NLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVE 169 (359)
T ss_dssp CEEEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC----------------------------------------
T ss_pred eeeeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccc
Confidence 9999998765 48999999999999999976532
Q ss_pred -------------------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCC
Q 001988 819 -------------------ALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGE 879 (985)
Q Consensus 819 -------------------~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~ 879 (985)
.+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++.+...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~L---H~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~ 246 (359)
T 3vhe_A 170 EKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKD 246 (359)
T ss_dssp --------------CTTTTCBCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSC
T ss_pred ccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHH---HHCCcccCCCChhhEEEcCCCcEEEEeccceeeeccc
Confidence 188999999999999999999 7889999999999999999999999999999877544
Q ss_pred CCcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhh-------------hhHHHHHHHH
Q 001988 880 DESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHF-------------AAKEQCLLSI 945 (985)
Q Consensus 880 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~-------------~~~~~~~~~l 945 (985)
..........||+.|+|||.+.+..++.++|+ |++|++++++++ +..++...... ..+..+++++
T Consensus 247 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di-~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 325 (359)
T 3vhe_A 247 PDYVRKGDARLPLKWMAPETIFDRVYTIQSDV-WSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEM 325 (359)
T ss_dssp TTCEEC--CEECGGGCCHHHHHHCCCCHHHHH-HHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHH
T ss_pred ccchhccccCCCceeEChhhhcCCCCCchhhh-hhHHHHHHHHHhcCCCCCCccchhHHHHHHHHcCCCCCCCCCCCHHH
Confidence 44444455678999999999999999999999 999999999997 77655432111 1122356789
Q ss_pred HHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhc
Q 001988 946 FSLALECTMESPEKRIDAKDTITRLLKIRDTLS 978 (985)
Q Consensus 946 ~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~ 978 (985)
.+++.+||..||.+||++.|+++.|+++.+...
T Consensus 326 ~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~ 358 (359)
T 3vhe_A 326 YQTMLDCWHGEPSQRPTFSELVEHLGNLLQANA 358 (359)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHccCChhhCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999987643
No 68
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=5.2e-37 Score=338.11 Aligned_cols=247 Identities=26% Similarity=0.356 Sum_probs=202.2
Q ss_pred HhcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCc--chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEE
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCA--STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVL 801 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~ 801 (985)
..++|+..+.||+|+||.||+|+. +++.||||++..... ...+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 35 ~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 113 (309)
T 3p86_A 35 PWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVT 113 (309)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEE
T ss_pred ChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEE
Confidence 457889999999999999999987 588999999976543 23467889999999999999999999999999999999
Q ss_pred eccCCCChHHHhhcCCC--CCCHHHHHHHHHHHHHHHHHHHhcCCCC--eEeCCCCCCCEEEcCCCcEEEecccCceecc
Q 001988 802 EYMSNGSLEDCLHSSNC--ALNIFCRLNIMIDIASALEYLHFGHSTP--IIHCDLKPSNVLLDEDMVAHLSDFGMAKLLS 877 (985)
Q Consensus 802 e~~~~gsL~~~l~~~~~--~~~~~~~~~i~~~i~~~L~~Lh~~h~~~--ivHrDlk~~Nill~~~~~~kl~DfGla~~~~ 877 (985)
||+++|+|.+++..... .+++..+..++.|++.||+|| |++| |+||||||+||+++.++.+||+|||+++...
T Consensus 114 e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~L---H~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~ 190 (309)
T 3p86_A 114 EYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYL---HNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKA 190 (309)
T ss_dssp ECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHH---HTSSSCCCCTTCCGGGEEECTTCCEEECCCC------
T ss_pred ecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH---HcCCCCEECCCCChhhEEEeCCCcEEECCCCCCcccc
Confidence 99999999999986532 389999999999999999999 7888 9999999999999999999999999998653
Q ss_pred CCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh-------------hHHHHHHH
Q 001988 878 GEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA-------------AKEQCLLS 944 (985)
Q Consensus 878 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~-------------~~~~~~~~ 944 (985)
.. ........||+.|+|||.+.+..++.++|+ |++|+++++++++..++....... .+..++.+
T Consensus 191 ~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di-wslG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (309)
T 3p86_A 191 ST--FLSSKSAAGTPEWMAPEVLRDEPSNEKSDV-YSFGVILWELATLQQPWGNLNPAQVVAAVGFKCKRLEIPRNLNPQ 267 (309)
T ss_dssp -------------CCTTSCHHHHTTCCCCTTHHH-HHHHHHHHHHHHCCCTTTTSCHHHHHHHHHHSCCCCCCCTTSCHH
T ss_pred cc--ccccccCCCCccccChhhhcCCCCCchhhH-HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHH
Confidence 22 122334569999999999999999999999 999999999999987665432111 12335678
Q ss_pred HHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhh
Q 001988 945 IFSLALECTMESPEKRIDAKDTITRLLKIRDTL 977 (985)
Q Consensus 945 l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~ 977 (985)
+.+++.+||..+|.+||++.++++.|+.+.+..
T Consensus 268 l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~ 300 (309)
T 3p86_A 268 VAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSA 300 (309)
T ss_dssp HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHccCChhhCcCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999987643
No 69
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=1.1e-36 Score=337.41 Aligned_cols=248 Identities=21% Similarity=0.262 Sum_probs=212.5
Q ss_pred cccCHHHHHHHhcC----------ccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCC
Q 001988 714 RRFSYFELLRATDN----------FAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHR 782 (985)
Q Consensus 714 ~~~~~~~~~~~~~~----------~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~ 782 (985)
..+++.++..+++. |...+.||+|+||.||+|+.. +|+.||||++........+.+.+|+.++++++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 102 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF 102 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence 45778888777764 666789999999999999976 7999999999877666677899999999999999
Q ss_pred CeeeEEeeeecCCceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCC
Q 001988 783 NLVKIISSCSNDDFKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDED 862 (985)
Q Consensus 783 niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~ 862 (985)
||+++++++...+..++||||+++|+|.+++... .+++..+..++.|++.||+|| |+.||+||||||+||+++.+
T Consensus 103 niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--~l~~~~~~~i~~qi~~~L~~L---H~~~ivH~Dlkp~NIll~~~ 177 (321)
T 2c30_A 103 NVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQV--RLNEEQIATVCEAVLQALAYL---HAQGVIHRDIKSDSILLTLD 177 (321)
T ss_dssp TBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTC--CCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCSGGGEEECTT
T ss_pred CcceEEEEEEECCEEEEEEecCCCCCHHHHHHhc--CCCHHHHHHHHHHHHHHHHHH---HHCCeecCCCCHHHEEECCC
Confidence 9999999999999999999999999999998754 589999999999999999999 78899999999999999999
Q ss_pred CcEEEecccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh-------
Q 001988 863 MVAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF------- 935 (985)
Q Consensus 863 ~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~------- 935 (985)
+.+||+|||+++.+.... .......||+.|+|||.+.+..++.++|+ |++|+++++++++..+.......
T Consensus 178 ~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv-~slG~il~el~~g~~pf~~~~~~~~~~~~~ 254 (321)
T 2c30_A 178 GRVKLSDFGFCAQISKDV--PKRKSLVGTPYWMAPEVISRSLYATEVDI-WSLGIMVIEMVDGEPPYFSDSPVQAMKRLR 254 (321)
T ss_dssp CCEEECCCTTCEECCSSS--CCBCCCCSCGGGCCHHHHTTCCBCTHHHH-HHHHHHHHHHHHSSCTTTTSCHHHHHHHHH
T ss_pred CcEEEeeeeeeeecccCc--cccccccCCccccCHhhhcCCCCCchhhH-HHHHHHHHHHHhCCCCCCCCCHHHHHHHHh
Confidence 999999999998865322 22344579999999999999999999999 99999999999988765432211
Q ss_pred -------hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 001988 936 -------AAKEQCLLSIFSLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 936 -------~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
.....+++++.+++.+||..||++||++.|+++.
T Consensus 255 ~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 295 (321)
T 2c30_A 255 DSPPPKLKNSHKVSPVLRDFLERMLVRDPQERATAQELLDH 295 (321)
T ss_dssp HSSCCCCTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred cCCCCCcCccccCCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 1122356779999999999999999999999873
No 70
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=2.3e-37 Score=336.93 Aligned_cols=247 Identities=21% Similarity=0.357 Sum_probs=209.8
Q ss_pred HhcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEec
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLEY 803 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e~ 803 (985)
..++|+..+.||+|+||.||+|.+.+++.||+|+++.... ..+++.+|++++++++||||+++++++.+.+..++||||
T Consensus 22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 100 (283)
T 3gen_A 22 DPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEY 100 (283)
T ss_dssp CGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECC
T ss_pred CHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEec
Confidence 4578899999999999999999999889999999986533 346789999999999999999999999999999999999
Q ss_pred cCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCCcc
Q 001988 804 MSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDEST 883 (985)
Q Consensus 804 ~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~ 883 (985)
+++|+|.+++......+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++...... ..
T Consensus 101 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~l---H~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~-~~ 176 (283)
T 3gen_A 101 MANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYL---ESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE-YT 176 (283)
T ss_dssp CTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHH---HHTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHH-HH
T ss_pred cCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH---HHCCccCCCCccceEEEcCCCCEEEccccccccccccc-cc
Confidence 999999999987656799999999999999999999 78999999999999999999999999999998764221 12
Q ss_pred eecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhhh------------hHHHHHHHHHHHHH
Q 001988 884 MRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHFA------------AKEQCLLSIFSLAL 950 (985)
Q Consensus 884 ~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~~------------~~~~~~~~l~~l~~ 950 (985)
......+|+.|+|||.+....++.++|+ |++|++++++++ +..++....... .+..+++.+.+++.
T Consensus 177 ~~~~~~~~~~y~aPE~~~~~~~~~~~Dv-~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~ 255 (283)
T 3gen_A 177 SSVGSKFPVRWSPPEVLMYSKFSSKSDI-WAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMY 255 (283)
T ss_dssp STTSTTSCGGGCCHHHHHHCCCSHHHHH-HHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHH
T ss_pred cccCCccCcccCCHHHhccCCCCchhhH-HHHHHHHHHHHhCCCCCccccChhHHHHHHhcccCCCCCCcCCHHHHHHHH
Confidence 2233457888999999999999999999 999999999997 776654332111 12224677999999
Q ss_pred HccCCCCCCCCCHHHHHHHHHHhHhh
Q 001988 951 ECTMESPEKRIDAKDTITRLLKIRDT 976 (985)
Q Consensus 951 ~cl~~~P~~RPt~~ev~~~L~~i~~~ 976 (985)
+||+.+|.+||++.|+++.|.++.++
T Consensus 256 ~~l~~~p~~Rps~~~ll~~L~~~~~~ 281 (283)
T 3gen_A 256 SCWHEKADERPTFKILLSNILDVMDE 281 (283)
T ss_dssp HTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHccCChhHCcCHHHHHHHHHHHhhc
Confidence 99999999999999999999998865
No 71
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=3.6e-37 Score=345.34 Aligned_cols=256 Identities=25% Similarity=0.382 Sum_probs=210.8
Q ss_pred HHhcCccCCceeeccCceeEEEEEEc------CCcEEEEEEeccCCcc-hHHHHHHHHHHHHhcCCCCeeeEEeeeecCC
Q 001988 723 RATDNFAENNIIGIGGFGSVYRARLE------DGVEIAIKVFHPQCAS-TLKSFEAECEVIKNIRHRNLVKIISSCSNDD 795 (985)
Q Consensus 723 ~~~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vAvK~~~~~~~~-~~~~~~~E~~il~~l~h~niv~l~~~~~~~~ 795 (985)
...++|...+.||+|+||.||+|+.. +++.||||+++..... ..+.+.+|++++++++||||+++++++.+.+
T Consensus 44 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~ 123 (343)
T 1luf_A 44 YPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGK 123 (343)
T ss_dssp CCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS
T ss_pred ecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCC
Confidence 34578999999999999999999874 3488999999865332 3567899999999999999999999999999
Q ss_pred ceEEEEeccCCCChHHHhhcCC-----------------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCC
Q 001988 796 FKALVLEYMSNGSLEDCLHSSN-----------------------CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDL 852 (985)
Q Consensus 796 ~~~lv~e~~~~gsL~~~l~~~~-----------------------~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDl 852 (985)
..++||||+++|+|.+++.... ..+++.+++.++.|+++||+|| |++||+||||
T Consensus 124 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~L---H~~~ivH~Dl 200 (343)
T 1luf_A 124 PMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYL---SERKFVHRDL 200 (343)
T ss_dssp SCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCC
T ss_pred ceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHH---HhCCeecCCC
Confidence 9999999999999999997642 4689999999999999999999 7889999999
Q ss_pred CCCCEEEcCCCcEEEecccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCc
Q 001988 853 KPSNVLLDEDMVAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGE 931 (985)
Q Consensus 853 k~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~ 931 (985)
||+||+++.++.+||+|||+++.+.............+|+.|+|||.+.+..++.++|+ |++|++++++++ +..+...
T Consensus 201 kp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di-~slG~il~el~t~g~~p~~~ 279 (343)
T 1luf_A 201 ATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDV-WAYGVVLWEIFSYGLQPYYG 279 (343)
T ss_dssp SGGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHH-HHHHHHHHHHHTTTCCTTTT
T ss_pred CcceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCccccc-HHHHHHHHHHHhcCCCcCCC
Confidence 99999999999999999999987643332223344568999999999999999999999 999999999998 6654433
Q ss_pred chhh------------hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhccccC
Q 001988 932 EKHF------------AAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLSKRIG 982 (985)
Q Consensus 932 ~~~~------------~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~~~~~ 982 (985)
.... ..++.++.++.+++.+||..||.+||++.++++.|+++.+.....+|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~~~~~~ 342 (343)
T 1luf_A 280 MAHEEVIYYVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERAEGTVG 342 (343)
T ss_dssp SCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC-------
T ss_pred CChHHHHHHHhCCCcCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhhhhhcC
Confidence 2111 11234567899999999999999999999999999999887765543
No 72
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.9e-36 Score=341.09 Aligned_cols=296 Identities=21% Similarity=0.249 Sum_probs=200.4
Q ss_pred CCChhHhhhccccceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhc
Q 001988 160 KLPENICNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIG 239 (985)
Q Consensus 160 ~lp~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 239 (985)
.+|..++..+++|++|+|++|.+++..|..|+++++|++|+|++|++++..|..|+++++|++|++++|+++...+..|+
T Consensus 59 ~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 138 (390)
T 3o6n_A 59 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 138 (390)
T ss_dssp EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhc
Confidence 45555556666677777777776655566777777777777777777766666777777777777777777744444467
Q ss_pred CCCCCCEEEecCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccE
Q 001988 240 YLQNLDVLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLIL 319 (985)
Q Consensus 240 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 319 (985)
++++|++|++++|++++..|..+.++++|++|++++|++++ ++. ..+++|+.|++++|.+++. ....+|+.
T Consensus 139 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~---~~l~~L~~L~l~~n~l~~~-----~~~~~L~~ 209 (390)
T 3o6n_A 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDL---SLIPSLFHANVSYNLLSTL-----AIPIAVEE 209 (390)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CCG---GGCTTCSEEECCSSCCSEE-----ECCSSCSE
T ss_pred CCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-ccc---ccccccceeeccccccccc-----CCCCcceE
Confidence 77777777777777777777777777777777777777763 331 3466777777777766532 22345666
Q ss_pred EEccCcccccccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhccccee
Q 001988 320 LEMGSNSFSGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLN 399 (985)
Q Consensus 320 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~ 399 (985)
|++++|.+...... ..++|+.|++++|++++. ..+..++ +|++|+
T Consensus 210 L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~-------------------------------~~l~~l~-~L~~L~ 254 (390)
T 3o6n_A 210 LDASHNSINVVRGP---VNVELTILKLQHNNLTDT-------------------------------AWLLNYP-GLVEVD 254 (390)
T ss_dssp EECCSSCCCEEECC---CCSSCCEEECCSSCCCCC-------------------------------GGGGGCT-TCSEEE
T ss_pred EECCCCeeeecccc---ccccccEEECCCCCCccc-------------------------------HHHcCCC-CccEEE
Confidence 66666666543221 124455555555554432 2333333 455555
Q ss_pred ccccccccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCCcccc
Q 001988 400 IAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISG 479 (985)
Q Consensus 400 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 479 (985)
+++|.+++..|..|..+++|++|+|++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|++|+|++|+|++
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~ 332 (390)
T 3o6n_A 255 LSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 332 (390)
T ss_dssp CCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred CCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce
Confidence 55566666667777778888888888888874 4556677888888888888887 566667788888888888888875
Q ss_pred ccCCCCcCcCcCceEeeccceeeee
Q 001988 480 SISSCLGNLTSLQYLNLGSNRFTFV 504 (985)
Q Consensus 480 ~~~~~~~~l~~L~~L~L~~N~l~~~ 504 (985)
. + +..+++|++|++++|+++..
T Consensus 333 ~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 333 L-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp C-C--CCTTCCCSEEECCSSCEEHH
T ss_pred e-C--chhhccCCEEEcCCCCccch
Confidence 4 2 66777888888888888753
No 73
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=8e-37 Score=338.93 Aligned_cols=238 Identities=25% Similarity=0.280 Sum_probs=204.7
Q ss_pred HhcCccCCceeeccCceeEEEEEE-cCCcEEEEEEeccCC--cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEE
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARL-EDGVEIAIKVFHPQC--ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vAvK~~~~~~--~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv 800 (985)
..++|...+.||+|+||.||+|++ .+|+.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 13 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 92 (328)
T 3fe3_A 13 HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLI 92 (328)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEE
Confidence 356899999999999999999997 589999999997552 23456788999999999999999999999999999999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCC
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGED 880 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~ 880 (985)
|||+++|+|.+++...+ .+++.....++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++.+....
T Consensus 93 ~e~~~~~~L~~~l~~~~-~l~~~~~~~~~~qi~~al~~l---H~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 168 (328)
T 3fe3_A 93 MEYASGGEVFDYLVAHG-RMKEKEARSKFRQIVSAVQYC---HQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGG 168 (328)
T ss_dssp ECCCTTCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSC
T ss_pred EECCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH---HHCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCCC
Confidence 99999999999997754 689999999999999999999 78999999999999999999999999999998764322
Q ss_pred CcceecccccccccccccccccCccc-hhhhcccccccchhhhcccccccCcchhhhh-----------HHHHHHHHHHH
Q 001988 881 ESTMRTQTLATIGYMAPDEIFVGELS-LKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA-----------KEQCLLSIFSL 948 (985)
Q Consensus 881 ~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~l~~l 948 (985)
.....+||+.|+|||.+.+..+. .++|+ |++|+++++++++..++........ +..++.++.++
T Consensus 169 ---~~~~~~gt~~y~aPE~~~~~~~~~~~~Di-wslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~l 244 (328)
T 3fe3_A 169 ---KLDAFCGAPPYAAPELFQGKKYDGPEVDV-WSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENL 244 (328)
T ss_dssp ---GGGTTSSSGGGCCHHHHHTCCCCSHHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHH
T ss_pred ---ccccccCCcceeCcccccCCCcCCchhhh-hhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence 23456799999999999888875 78999 9999999999999887654322211 12245778999
Q ss_pred HHHccCCCCCCCCCHHHHHHH
Q 001988 949 ALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 949 ~~~cl~~~P~~RPt~~ev~~~ 969 (985)
+.+|+..||.+|||+.|+++.
T Consensus 245 i~~~L~~dP~~R~t~~eil~h 265 (328)
T 3fe3_A 245 LKRFLVLNPIKRGTLEQIMKD 265 (328)
T ss_dssp HHHHCCSSTTTSCCHHHHTTC
T ss_pred HHHHCCCChhHCcCHHHHhcC
Confidence 999999999999999999763
No 74
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=345.75 Aligned_cols=251 Identities=25% Similarity=0.365 Sum_probs=213.2
Q ss_pred HhcCccCCceeeccCceeEEEEEEc--------CCcEEEEEEeccCCc-chHHHHHHHHHHHHhc-CCCCeeeEEeeeec
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE--------DGVEIAIKVFHPQCA-STLKSFEAECEVIKNI-RHRNLVKIISSCSN 793 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~--------~~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l-~h~niv~l~~~~~~ 793 (985)
..++|...+.||+|+||.||+|+.. ++..||||+++.... .....+.+|+++++++ +||||+++++++.+
T Consensus 67 ~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~ 146 (382)
T 3tt0_A 67 PRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ 146 (382)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred chhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeecc
Confidence 3468899999999999999999852 346799999976533 3456789999999999 89999999999999
Q ss_pred CCceEEEEeccCCCChHHHhhcCC---------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEE
Q 001988 794 DDFKALVLEYMSNGSLEDCLHSSN---------------CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVL 858 (985)
Q Consensus 794 ~~~~~lv~e~~~~gsL~~~l~~~~---------------~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nil 858 (985)
++..++||||+++|+|.+++.... ..+++..+..++.|++.||+|| |++||+||||||+||+
T Consensus 147 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~L---H~~~ivH~Dlkp~NIl 223 (382)
T 3tt0_A 147 DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYL---ASKKCIHRDLAARNVL 223 (382)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCCGGGEE
T ss_pred CCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHH---HhCCEecCCCCcceEE
Confidence 999999999999999999998653 3589999999999999999999 7889999999999999
Q ss_pred EcCCCcEEEecccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhhh-
Q 001988 859 LDEDMVAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHFA- 936 (985)
Q Consensus 859 l~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~~- 936 (985)
+++++.+||+|||+++...............+|+.|+|||.+.+..++.++|+ |++|++++++++ +..+........
T Consensus 224 l~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di-wslG~il~ellt~g~~p~~~~~~~~~ 302 (382)
T 3tt0_A 224 VTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDV-WSFGVLLWEIFTLGGSPYPGVPVEEL 302 (382)
T ss_dssp ECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHH-HHHHHHHHHHHTTSCCSSTTCCHHHH
T ss_pred EcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHH-HHHHHHHHHHHhCCCCCCCCCCHHHH
Confidence 99999999999999987754443333445568899999999999999999999 999999999998 766554332111
Q ss_pred -----------hHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhc
Q 001988 937 -----------AKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLS 978 (985)
Q Consensus 937 -----------~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~ 978 (985)
.+..+++++.+++.+||..||++||++.|+++.|+++.....
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~ 355 (382)
T 3tt0_A 303 FKLLKEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTS 355 (382)
T ss_dssp HHHHHTTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHh
Confidence 122356789999999999999999999999999999987543
No 75
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=5.1e-37 Score=347.15 Aligned_cols=248 Identities=23% Similarity=0.410 Sum_probs=198.6
Q ss_pred hcCccCCceeeccCceeEEEEEEc----CCcEEEEEEeccCCc-chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE----DGVEIAIKVFHPQCA-STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKAL 799 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~l 799 (985)
.++|...+.||+|+||.||+|+.. ++..||||+++.... ...+.+.+|++++++++||||+++++++.+.+..++
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 123 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI 123 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEE
Confidence 357899999999999999999864 577899999976532 345678999999999999999999999999999999
Q ss_pred EEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCC
Q 001988 800 VLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGE 879 (985)
Q Consensus 800 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~ 879 (985)
||||+++|+|.++++..+..+++..+..++.|+++||+|| |++||+||||||+||+++.++.+||+|||+++.+...
T Consensus 124 v~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~L---H~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~ 200 (373)
T 2qol_A 124 VTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDD 200 (373)
T ss_dssp EEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCCGGGEEECTTCCEEECCC---------
T ss_pred EEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH---HHCCeeCCCCCcceEEEcCCCCEEECcCccccccccC
Confidence 9999999999999988776799999999999999999999 7889999999999999999999999999999887533
Q ss_pred CCcc-eecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhh------------hhHHHHHHHH
Q 001988 880 DEST-MRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHF------------AAKEQCLLSI 945 (985)
Q Consensus 880 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~------------~~~~~~~~~l 945 (985)
.... ......+++.|+|||.+....++.++|+ |++|++++++++ ++.+....... +.+..++.++
T Consensus 201 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv-~SlG~il~ellt~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l 279 (373)
T 2qol_A 201 PEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDV-WSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEGYRLPPPMDCPAAL 279 (373)
T ss_dssp -------------CTTSCHHHHHHCCCCHHHHH-HHHHHHHHHHHTTC-CTTTTCCHHHHHHHHHTTEECCCCTTCBHHH
T ss_pred CccceeccCCCcCCCccChhhhccCCcCchhcH-HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCccccHHH
Confidence 2211 1222346788999999999999999999 999999999887 66554322111 1122456789
Q ss_pred HHHHHHccCCCCCCCCCHHHHHHHHHHhHhh
Q 001988 946 FSLALECTMESPEKRIDAKDTITRLLKIRDT 976 (985)
Q Consensus 946 ~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~ 976 (985)
.+++.+||+.+|.+||++.++++.|+++.+.
T Consensus 280 ~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~ 310 (373)
T 2qol_A 280 YQLMLDCWQKDRNNRPKFEQIVSILDKLIRN 310 (373)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcChhhCcCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999998764
No 76
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.5e-37 Score=342.10 Aligned_cols=240 Identities=26% Similarity=0.324 Sum_probs=197.2
Q ss_pred HhcCccCCceeeccCceeEEEEEE-cCCcEEEEEEeccCCc-chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEE
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARL-EDGVEIAIKVFHPQCA-STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVL 801 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~ 801 (985)
..++|+..+.||+|+||.||+|+. .+|+.||||++..... .....+.+|++++++++||||+++++++.+.+..++||
T Consensus 8 l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 87 (347)
T 3zgw_A 8 LLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFMVL 87 (347)
T ss_dssp TTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEEE
Confidence 357899999999999999999986 4899999999976532 34567899999999999999999999999999999999
Q ss_pred eccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCC
Q 001988 802 EYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDE 881 (985)
Q Consensus 802 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 881 (985)
||+++|+|.+++...+ .+++..+..++.|++.||+|| |++||+||||||+||++++++.+||+|||++........
T Consensus 88 E~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~L---H~~givHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~ 163 (347)
T 3zgw_A 88 EYCPGGELFDYIISQD-RLSEEETRVVFRQIVSAVAYV---HSQGYAHRDLKPENLLFDEYHKLKLIDFGLCAKPKGNKD 163 (347)
T ss_dssp ECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHH---HHTTCBCCCCCGGGEEECTTSCEEECCCTTCBC------
T ss_pred eCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH---HHCCeEeCCccHHHEEEcCCCCEEEEeccCcccccCCCC
Confidence 9999999999997654 689999999999999999999 789999999999999999999999999999987543222
Q ss_pred cceecccccccccccccccccCcc-chhhhcccccccchhhhcccccccCcchhhhh-----------HHHHHHHHHHHH
Q 001988 882 STMRTQTLATIGYMAPDEIFVGEL-SLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA-----------KEQCLLSIFSLA 949 (985)
Q Consensus 882 ~~~~~~~~gt~~y~aPE~~~~~~~-~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~l~~l~ 949 (985)
......+||+.|+|||.+.+..+ +.++|+ |++|+++++++++..++........ +...+.++.+++
T Consensus 164 -~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di-wSlG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li 241 (347)
T 3zgw_A 164 -YHLQTCCGSLAYAAPELIQGKSYLGSEADV-WSMGILLYVLMCGFLPFDDDNVMALYKKIMRGKYDVPKWLSPSSILLL 241 (347)
T ss_dssp ---------CGGGCCHHHHTTC---CCHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTCCHHHHHHH
T ss_pred -ccccccCCccCccCHHHHcCCCCCCcHhHH-HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHH
Confidence 22344579999999999988775 888999 9999999999999887654422211 122457788999
Q ss_pred HHccCCCCCCCCCHHHHHHH
Q 001988 950 LECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 950 ~~cl~~~P~~RPt~~ev~~~ 969 (985)
.+||..||.+|||+.|+++.
T Consensus 242 ~~~L~~dP~~Rps~~eil~h 261 (347)
T 3zgw_A 242 QQMLQVDPKKRISMKNLLNH 261 (347)
T ss_dssp HHHTCSSGGGSCCHHHHHTC
T ss_pred HHHcccCHhHCcCHHHHhcC
Confidence 99999999999999999864
No 77
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.5e-36 Score=334.39 Aligned_cols=237 Identities=18% Similarity=0.227 Sum_probs=205.8
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEec
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLEY 803 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e~ 803 (985)
.++|...+.||+|+||.||+|... +++.||+|.+... ......+.+|++++++++||||+++++++.+.+..++||||
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 82 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-GTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF 82 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC-THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC-cccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence 468999999999999999999976 6889999998754 33456788999999999999999999999999999999999
Q ss_pred cCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcC--CCcEEEecccCceeccCCCC
Q 001988 804 MSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDE--DMVAHLSDFGMAKLLSGEDE 881 (985)
Q Consensus 804 ~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~--~~~~kl~DfGla~~~~~~~~ 881 (985)
+++|+|.+++......+++..+..++.|++.||+|| |++||+||||||+||+++. ++.+||+|||+++.+....
T Consensus 83 ~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~l---H~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~- 158 (321)
T 1tki_A 83 ISGLDIFERINTSAFELNEREIVSYVHQVCEALQFL---HSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGD- 158 (321)
T ss_dssp CCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTC-
T ss_pred CCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH---HHCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCC-
Confidence 999999999987766799999999999999999999 7889999999999999987 7899999999998875322
Q ss_pred cceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh---------------hHHHHHHHHH
Q 001988 882 STMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA---------------AKEQCLLSIF 946 (985)
Q Consensus 882 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~---------------~~~~~~~~l~ 946 (985)
......||+.|+|||.+.+..++.++|+ |++|+++++++++..++....... ....++.++.
T Consensus 159 --~~~~~~gt~~y~aPE~~~~~~~~~~~Di-wslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~ 235 (321)
T 1tki_A 159 --NFRLLFTAPEYYAPEVHQHDVVSTATDM-WSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAM 235 (321)
T ss_dssp --EEEEEESCGGGSCHHHHTTCEECHHHHH-HHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHH
T ss_pred --ccccccCChhhcCcHHhcCCCCCchhhH-HHHHHHHHHHHhCCCCCcCCCHHHHHHHHHcCCCCCChhhhccCCHHHH
Confidence 2334569999999999999889999999 999999999999887654432111 1123567899
Q ss_pred HHHHHccCCCCCCCCCHHHHHHH
Q 001988 947 SLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 947 ~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
+++.+|+..||.+|||+.|+++.
T Consensus 236 ~li~~~L~~dp~~Rpt~~e~l~h 258 (321)
T 1tki_A 236 DFVDRLLVKERKSRMTASEALQH 258 (321)
T ss_dssp HHHHTTSCSSGGGSCCHHHHHHS
T ss_pred HHHHHHcCCChhHCcCHHHHhcC
Confidence 99999999999999999999873
No 78
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=4.4e-37 Score=347.21 Aligned_cols=249 Identities=22% Similarity=0.351 Sum_probs=209.1
Q ss_pred hcCccCCceeeccCceeEEEEEEc------CCcEEEEEEeccCC-cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCce
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE------DGVEIAIKVFHPQC-ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFK 797 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vAvK~~~~~~-~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~ 797 (985)
.++|...+.||+|+||.||+|++. +++.||||+++... ......+.+|+.++++++||||+++++++.+.+..
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~ 149 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 149 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence 467888999999999999999843 56789999997543 33456788999999999999999999999999999
Q ss_pred EEEEeccCCCChHHHhhcCC------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCC---cEEEe
Q 001988 798 ALVLEYMSNGSLEDCLHSSN------CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDM---VAHLS 868 (985)
Q Consensus 798 ~lv~e~~~~gsL~~~l~~~~------~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~---~~kl~ 868 (985)
++||||+++|+|.+++.... ..+++.+++.++.|++.||+|| |++||+||||||+|||++.++ .+||+
T Consensus 150 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~L---H~~~ivHrDlkp~NIll~~~~~~~~~kL~ 226 (367)
T 3l9p_A 150 FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYL---EENHFIHRDIAARNCLLTCPGPGRVAKIG 226 (367)
T ss_dssp EEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred EEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHH---HhCCeeCCCCChhhEEEecCCCCceEEEC
Confidence 99999999999999998643 3589999999999999999999 789999999999999999555 59999
Q ss_pred cccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhh------------
Q 001988 869 DFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHF------------ 935 (985)
Q Consensus 869 DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~------------ 935 (985)
|||+++.+.............+|+.|+|||.+.+..++.++|+ |++|++++++++ +..++......
T Consensus 227 DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Dv-wslG~il~ellt~g~~pf~~~~~~~~~~~i~~~~~~ 305 (367)
T 3l9p_A 227 DFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDT-WSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRM 305 (367)
T ss_dssp CCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHH-HHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCC
T ss_pred CCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHH-HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCC
Confidence 9999986543333233344568999999999999999999999 999999999997 76655433211
Q ss_pred hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhh
Q 001988 936 AAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTL 977 (985)
Q Consensus 936 ~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~ 977 (985)
..+..++.++.+++.+||+.+|.+||++.++++.++.+.+..
T Consensus 306 ~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~~ 347 (367)
T 3l9p_A 306 DPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP 347 (367)
T ss_dssp CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred CCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhCh
Confidence 112345678999999999999999999999999999988743
No 79
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=2e-36 Score=334.65 Aligned_cols=252 Identities=21% Similarity=0.347 Sum_probs=214.8
Q ss_pred HhcCccCCceeeccCceeEEEEEE------cCCcEEEEEEeccCCc-chHHHHHHHHHHHHhc-CCCCeeeEEeeeecCC
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARL------EDGVEIAIKVFHPQCA-STLKSFEAECEVIKNI-RHRNLVKIISSCSNDD 795 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l-~h~niv~l~~~~~~~~ 795 (985)
..++|...+.||+|+||.||+|+. .+++.||+|+++.... ...+.+.+|+++++++ +||||+++++++.+.+
T Consensus 21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~ 100 (313)
T 1t46_A 21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG 100 (313)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred ChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCC
Confidence 456899999999999999999985 3578899999986543 3457789999999999 9999999999999999
Q ss_pred ceEEEEeccCCCChHHHhhcCCC-----------------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEE
Q 001988 796 FKALVLEYMSNGSLEDCLHSSNC-----------------ALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVL 858 (985)
Q Consensus 796 ~~~lv~e~~~~gsL~~~l~~~~~-----------------~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nil 858 (985)
..++||||+++|+|.+++..... .+++..+..++.|+++||+|| |++||+||||||+||+
T Consensus 101 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l---H~~~i~H~dlkp~Nil 177 (313)
T 1t46_A 101 PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFL---ASKNCIHRDLAARNIL 177 (313)
T ss_dssp SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCSGGGEE
T ss_pred CcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHH---HHCCeecCCCccceEE
Confidence 99999999999999999986532 489999999999999999999 7889999999999999
Q ss_pred EcCCCcEEEecccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhhh-
Q 001988 859 LDEDMVAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHFA- 936 (985)
Q Consensus 859 l~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~~- 936 (985)
++.++.+||+|||+++...............+|+.|+|||.+.+..++.++|+ |++|++++++++ +..+........
T Consensus 178 ~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~ellt~g~~p~~~~~~~~~ 256 (313)
T 1t46_A 178 LTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDV-WSYGIFLWELFSLGSSPYPGMPVDSK 256 (313)
T ss_dssp EETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHH-HHHHHHHHHHHTTTCCSSTTCCSSHH
T ss_pred EcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHH-HHHHHHHHHHHhCCCCCCCcccchhH
Confidence 99999999999999988765444334445568889999999999999999999 999999999998 766554322111
Q ss_pred ------------hHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhcc
Q 001988 937 ------------AKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLSK 979 (985)
Q Consensus 937 ------------~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~~ 979 (985)
.+..+++++.+++.+||..||.+||++.|+++.|+++.+....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~ 311 (313)
T 1t46_A 257 FYKMIKEGFRMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISESTN 311 (313)
T ss_dssp HHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTCC
T ss_pred HHHHhccCCCCCCcccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHhhc
Confidence 1223567899999999999999999999999999998876544
No 80
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=1.8e-36 Score=335.21 Aligned_cols=249 Identities=26% Similarity=0.378 Sum_probs=211.8
Q ss_pred HhcCccCCceeeccCceeEEEEEE------cCCcEEEEEEeccCCc-chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCc
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARL------EDGVEIAIKVFHPQCA-STLKSFEAECEVIKNIRHRNLVKIISSCSNDDF 796 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~ 796 (985)
..++|...+.||+|+||.||+|.. .+++.||||+++.... ...+.+.+|++++++++||||+++++++.+.+.
T Consensus 21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 100 (314)
T 2ivs_A 21 PRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGP 100 (314)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred chhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCc
Confidence 457889999999999999999986 2457899999976532 345678999999999999999999999999999
Q ss_pred eEEEEeccCCCChHHHhhcCC-----------------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCC
Q 001988 797 KALVLEYMSNGSLEDCLHSSN-----------------------CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLK 853 (985)
Q Consensus 797 ~~lv~e~~~~gsL~~~l~~~~-----------------------~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk 853 (985)
.++||||+++|+|.+++.... ..+++.+++.++.|+++||+|| |++||+|||||
T Consensus 101 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~l---H~~~ivH~dik 177 (314)
T 2ivs_A 101 LLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYL---AEMKLVHRDLA 177 (314)
T ss_dssp CEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHH---HHTTEECCCCS
T ss_pred eEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHH---HHCCCcccccc
Confidence 999999999999999998643 2378999999999999999999 78899999999
Q ss_pred CCCEEEcCCCcEEEecccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcc
Q 001988 854 PSNVLLDEDMVAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEE 932 (985)
Q Consensus 854 ~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~ 932 (985)
|+||+++.++.+||+|||+++...............+|+.|+|||.+.+..++.++|+ |++|++++++++ +..+....
T Consensus 178 p~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~el~t~g~~p~~~~ 256 (314)
T 2ivs_A 178 ARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDV-WSFGVLLWEIVTLGGNPYPGI 256 (314)
T ss_dssp GGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHH-HHHHHHHHHHHTTSCCSSTTC
T ss_pred hheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhH-HHHHHHHHHHHhCCCCCCCCC
Confidence 9999999999999999999988754443333344567889999999999999999999 999999999998 76554432
Q ss_pred hhhh------------hHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhh
Q 001988 933 KHFA------------AKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDT 976 (985)
Q Consensus 933 ~~~~------------~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~ 976 (985)
.... .+..+++++.+++.+||..||.+||++.|+++.|+++.+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~ 312 (314)
T 2ivs_A 257 PPERLFNLLKTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVK 312 (314)
T ss_dssp CGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhhcCCcCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhh
Confidence 2111 1224567899999999999999999999999999998765
No 81
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=2e-36 Score=333.30 Aligned_cols=249 Identities=24% Similarity=0.395 Sum_probs=205.6
Q ss_pred HhcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCc--chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEE
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCA--STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVL 801 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~ 801 (985)
..++|...+.||+|+||.||+|+.. ..+|+|+++.... ...+.+.+|++++++++||||+++++++.. +..++||
T Consensus 34 ~~~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-~~~~lv~ 110 (307)
T 3lb7_A 34 EASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVT 110 (307)
T ss_dssp CTTSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEE
T ss_pred cccceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcc-CcEEEEE
Confidence 3468889999999999999999875 3589998875432 345678999999999999999999998754 5578999
Q ss_pred eccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCC
Q 001988 802 EYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDE 881 (985)
Q Consensus 802 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 881 (985)
||+++|+|.+++......+++.++..++.|++.||+|| |+.||+||||||+||++++++.+||+|||+++.......
T Consensus 111 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~L---H~~~ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~~~~ 187 (307)
T 3lb7_A 111 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYL---HAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSG 187 (307)
T ss_dssp ECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCCSSSEEECTTSCEEECCCCSSCC------
T ss_pred ecCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH---HhCCEeeCCCChhhEEEcCCCCEEEccCCCceecccccc
Confidence 99999999999987777899999999999999999999 788999999999999999999999999999987643333
Q ss_pred cceecccccccccccccccc---cCccchhhhcccccccchhhhcccccccCcchhhh-----------------hHHHH
Q 001988 882 STMRTQTLATIGYMAPDEIF---VGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA-----------------AKEQC 941 (985)
Q Consensus 882 ~~~~~~~~gt~~y~aPE~~~---~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~-----------------~~~~~ 941 (985)
........||+.|+|||.+. ...++.++|+ |++|+++++++++..++....... ....+
T Consensus 188 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di-~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (307)
T 3lb7_A 188 SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDV-YSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNC 266 (307)
T ss_dssp ------CCCCTTSCCHHHHHCCSSCCCCHHHHH-HHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHHTCCCCCSTTSCSSS
T ss_pred cccccCCCCCcceECcceeeccCCCCCCchhhH-HHHHHHHHHHHhCCCCCccCCcHHHHHHHHhcCCCCcchhhhhcCC
Confidence 33344557999999999986 6678899999 999999999999887765322111 11235
Q ss_pred HHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhcc
Q 001988 942 LLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLSK 979 (985)
Q Consensus 942 ~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~~ 979 (985)
++++.+++.+||..+|++||++.|+++.++.+.+.+++
T Consensus 267 ~~~l~~li~~~l~~~p~~RPs~~~il~~l~~l~~~~pk 304 (307)
T 3lb7_A 267 PKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPK 304 (307)
T ss_dssp CHHHHHHHHHHSCSSSTTSCCHHHHHHHHHHHHTTCCC
T ss_pred cHHHHHHHHHHhhCChhhCcCHHHHHHHHHHHHhhccc
Confidence 77899999999999999999999999999999887654
No 82
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.8e-36 Score=339.78 Aligned_cols=254 Identities=21% Similarity=0.303 Sum_probs=209.9
Q ss_pred HHhcCccCCceeeccCceeEEEEEE------cCCcEEEEEEeccCC-cchHHHHHHHHHHHHhc-CCCCeeeEEeeeecC
Q 001988 723 RATDNFAENNIIGIGGFGSVYRARL------EDGVEIAIKVFHPQC-ASTLKSFEAECEVIKNI-RHRNLVKIISSCSND 794 (985)
Q Consensus 723 ~~~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vAvK~~~~~~-~~~~~~~~~E~~il~~l-~h~niv~l~~~~~~~ 794 (985)
...++|...+.||+|+||.||+|+. .+++.||+|+++... ....+.+.+|+++++++ +||||+++++++...
T Consensus 42 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~ 121 (344)
T 1rjb_A 42 FPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLS 121 (344)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred cCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeC
Confidence 3567899999999999999999986 246689999997552 23456789999999999 899999999999999
Q ss_pred CceEEEEeccCCCChHHHhhcCCC----------------------CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCC
Q 001988 795 DFKALVLEYMSNGSLEDCLHSSNC----------------------ALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDL 852 (985)
Q Consensus 795 ~~~~lv~e~~~~gsL~~~l~~~~~----------------------~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDl 852 (985)
+..++||||+++|+|.+++..... .+++..+..++.|++.||+|| |++||+||||
T Consensus 122 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~L---H~~~ivH~Di 198 (344)
T 1rjb_A 122 GPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFL---EFKSCVHRDL 198 (344)
T ss_dssp SSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHH---HHTTEEETTC
T ss_pred CccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHH---HhCCcccCCC
Confidence 999999999999999999986532 378999999999999999999 7899999999
Q ss_pred CCCCEEEcCCCcEEEecccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCc
Q 001988 853 KPSNVLLDEDMVAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGE 931 (985)
Q Consensus 853 k~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~ 931 (985)
||+||+++.++.+||+|||+++.+.............+|+.|+|||.+.++.++.++|+ |++|++++++++ +..+...
T Consensus 199 kp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di-~slG~il~el~t~g~~p~~~ 277 (344)
T 1rjb_A 199 AARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDV-WSYGILLWEIFSLGVNPYPG 277 (344)
T ss_dssp SGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHH-HHHHHHHHHHTTTSCCSSTT
T ss_pred ChhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhH-HHHHHHHHHHHcCCCCCccc
Confidence 99999999999999999999987754444444455568899999999999999999999 999999999997 7655443
Q ss_pred chhh-------------hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhccc
Q 001988 932 EKHF-------------AAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLSKR 980 (985)
Q Consensus 932 ~~~~-------------~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~~~ 980 (985)
.... ..+..+++++.+++.+||..||.+||++.|+++.|+.+......+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~~ 339 (344)
T 1rjb_A 278 IPVDANFYKLIQNGFKMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLADAEEA 339 (344)
T ss_dssp CCCSHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC------
T ss_pred CCcHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHHHHH
Confidence 2211 112235678999999999999999999999999999988765543
No 83
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-35 Score=357.45 Aligned_cols=296 Identities=21% Similarity=0.237 Sum_probs=208.3
Q ss_pred CCChhHhhhccccceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhc
Q 001988 160 KLPENICNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIG 239 (985)
Q Consensus 160 ~lp~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 239 (985)
.+|+.+++++++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|+|++|++++..+..|+
T Consensus 65 ~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 144 (597)
T 3oja_B 65 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 144 (597)
T ss_dssp EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhc
Confidence 45666666777777777777777766667778888888888888888877777778888888888888888755555567
Q ss_pred CCCCCCEEEecCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccE
Q 001988 240 YLQNLDVLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLIL 319 (985)
Q Consensus 240 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 319 (985)
++++|++|+|++|.+++..|..|.++++|++|+|++|.+++ ++. ..+++|+.|++++|.+++. ....+|+.
T Consensus 145 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~---~~l~~L~~L~l~~n~l~~l-----~~~~~L~~ 215 (597)
T 3oja_B 145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDL---SLIPSLFHANVSYNLLSTL-----AIPIAVEE 215 (597)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CCG---GGCTTCSEEECCSSCCSEE-----ECCTTCSE
T ss_pred cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cCh---hhhhhhhhhhcccCccccc-----cCCchhhe
Confidence 88888888888888887777778888888888888887774 332 3467777777777776632 23345666
Q ss_pred EEccCcccccccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhccccee
Q 001988 320 LEMGSNSFSGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLN 399 (985)
Q Consensus 320 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~ 399 (985)
|++++|.+....+.. .+ +|+.|++++|.+++ +..+..++ +|+.|+
T Consensus 216 L~ls~n~l~~~~~~~---~~-----------------------------~L~~L~L~~n~l~~--~~~l~~l~-~L~~L~ 260 (597)
T 3oja_B 216 LDASHNSINVVRGPV---NV-----------------------------ELTILKLQHNNLTD--TAWLLNYP-GLVEVD 260 (597)
T ss_dssp EECCSSCCCEEECSC---CS-----------------------------CCCEEECCSSCCCC--CGGGGGCT-TCSEEE
T ss_pred eeccCCccccccccc---CC-----------------------------CCCEEECCCCCCCC--ChhhccCC-CCCEEE
Confidence 666666665332221 13 34444444444443 23344444 566666
Q ss_pred ccccccccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCCcccc
Q 001988 400 IAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISG 479 (985)
Q Consensus 400 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 479 (985)
|++|.+++.+|..|..+++|++|+|++|++++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++
T Consensus 261 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 261 LSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp CCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred CCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC
Confidence 66666666677777888888888888888875 4666677888888888888888 567777888888888888888875
Q ss_pred ccCCCCcCcCcCceEeeccceeeee
Q 001988 480 SISSCLGNLTSLQYLNLGSNRFTFV 504 (985)
Q Consensus 480 ~~~~~~~~l~~L~~L~L~~N~l~~~ 504 (985)
.. +..+++|+.|++++|.+++.
T Consensus 339 ~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 339 LK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CC---CCTTCCCSEEECCSSCEEHH
T ss_pred cC---hhhcCCCCEEEeeCCCCCCh
Confidence 42 56677888888888887753
No 84
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=9.2e-37 Score=339.32 Aligned_cols=247 Identities=22% Similarity=0.358 Sum_probs=202.7
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCc----EEEEEEeccCC-cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGV----EIAIKVFHPQC-ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKA 798 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~----~vAvK~~~~~~-~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~ 798 (985)
.++|+..+.||+|+||.||+|++. +++ +||+|.++... ....+.+.+|+.++++++||||++++++|.+.+ .+
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~ 92 (327)
T 3poz_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EE
T ss_pred HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eE
Confidence 367889999999999999999864 444 36888876442 234578999999999999999999999998765 67
Q ss_pred EEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccC
Q 001988 799 LVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSG 878 (985)
Q Consensus 799 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~ 878 (985)
+|+||+++|+|.+++......+++..++.++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++.+..
T Consensus 93 ~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~L---H~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~ 169 (327)
T 3poz_A 93 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYL---EDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 169 (327)
T ss_dssp EEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCCGGGEEEEETTEEEECCTTHHHHHTT
T ss_pred EEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH---hhCCeeCCCCChheEEECCCCCEEEccCcceeEccC
Confidence 99999999999999998777899999999999999999999 788999999999999999999999999999988765
Q ss_pred CCCcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhh------------hhHHHHHHHH
Q 001988 879 EDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHF------------AAKEQCLLSI 945 (985)
Q Consensus 879 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~------------~~~~~~~~~l 945 (985)
...........+|+.|+|||.+.+..++.++|+ |++|++++++++ +..++...... ..+..++.++
T Consensus 170 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di-~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (327)
T 3poz_A 170 EEKEYHAEGGKVPIKWMALESILHRIYTHQSDV-WSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDV 248 (327)
T ss_dssp TCC-------CCCGGGSCHHHHHHCCCCHHHHH-HHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTBCHHH
T ss_pred CcccccccCCCccccccChHHhccCCCCchhhh-hhhHHHHHHHHhcCCCCccCCCHHHHHHHHHcCCCCCCCccCCHHH
Confidence 444444444567889999999999999999999 999999999998 77665432211 1223366789
Q ss_pred HHHHHHccCCCCCCCCCHHHHHHHHHHhHhh
Q 001988 946 FSLALECTMESPEKRIDAKDTITRLLKIRDT 976 (985)
Q Consensus 946 ~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~ 976 (985)
.+++.+||..+|.+||++.|+++.|+++.+.
T Consensus 249 ~~li~~~l~~~p~~Rps~~ell~~l~~~~~~ 279 (327)
T 3poz_A 249 YMIMVKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp HHHHHHHTCSCGGGSCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCChhhCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999988764
No 85
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=3.7e-36 Score=331.79 Aligned_cols=237 Identities=22% Similarity=0.307 Sum_probs=198.6
Q ss_pred hcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCc--chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEe
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCA--STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLE 802 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e 802 (985)
.++|+..+.||+|+||.||+|+..+++.||+|++..... .....+.+|++++++++||||+++++++.+.+..++|||
T Consensus 20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 99 (311)
T 3niz_A 20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFE 99 (311)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEE
T ss_pred HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEc
Confidence 478999999999999999999998899999999975532 234678899999999999999999999999999999999
Q ss_pred ccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCCc
Q 001988 803 YMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDES 882 (985)
Q Consensus 803 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~~ 882 (985)
|++ |+|.+++......+++..+..++.|++.||+|| |+.||+||||||+||+++.++.+||+|||+++.+....
T Consensus 100 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~L---H~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~-- 173 (311)
T 3niz_A 100 FME-KDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHC---HQHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPV-- 173 (311)
T ss_dssp CCS-EEHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCC--
T ss_pred CCC-CCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH---HHCCcccCCCchHhEEECCCCCEEEccCcCceecCCCc--
Confidence 997 489998887766799999999999999999999 78999999999999999999999999999998864322
Q ss_pred ceeccccccccccccccccc-CccchhhhcccccccchhhhcccccccCcchhhhh------------------------
Q 001988 883 TMRTQTLATIGYMAPDEIFV-GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA------------------------ 937 (985)
Q Consensus 883 ~~~~~~~gt~~y~aPE~~~~-~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~------------------------ 937 (985)
.......||+.|+|||.+.+ ..++.++|+ |++|+++++++++..++........
T Consensus 174 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di-wslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 252 (311)
T 3niz_A 174 RSYTHEVVTLWYRAPDVLMGSKKYSTSVDI-WSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELPL 252 (311)
T ss_dssp C---CCCCCCTTCCHHHHTTCCSCCTHHHH-HHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTSHH
T ss_pred ccccCCcccCCcCCHHHhcCCCCCCchHHh-HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhccch
Confidence 22334568999999999876 568999999 9999999999998865543211110
Q ss_pred -----------------HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 938 -----------------KEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 938 -----------------~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
.+.+.+++.+++.+|+..||++|||+.|+++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 300 (311)
T 3niz_A 253 WKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN 300 (311)
T ss_dssp HHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred hhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 0113457889999999999999999999986
No 86
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=2.9e-36 Score=335.35 Aligned_cols=237 Identities=24% Similarity=0.282 Sum_probs=203.1
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC---cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC---ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~---~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv 800 (985)
.++|+..+.||+|+||.||+|+.+ +++.||+|++++.. ......+.+|++++++++||||+++++++.+.+..++|
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv 83 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV 83 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence 367899999999999999999975 78999999997542 23456788999999999999999999999999999999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCC
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGED 880 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~ 880 (985)
|||++||+|.+++...+ .+++.....++.||+.||+|| |++||+||||||+||+++.+|.+||+|||+++......
T Consensus 84 ~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~L---H~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~ 159 (337)
T 1o6l_A 84 MEYANGGELFFHLSRER-VFTEERARFYGAEIVSALEYL---HSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG 159 (337)
T ss_dssp EECCTTCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHH---HHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTT
T ss_pred EeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HHCCeecCcCCHHHEEECCCCCEEEeeccchhhcccCC
Confidence 99999999999998654 688999999999999999999 78999999999999999999999999999998643222
Q ss_pred CcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhhh-----------HHHHHHHHHHHH
Q 001988 881 ESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA-----------KEQCLLSIFSLA 949 (985)
Q Consensus 881 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~l~~l~ 949 (985)
......+||+.|+|||.+.+..++.++|+ |++|++++++++|..+......... +...++++.+++
T Consensus 160 --~~~~~~~gt~~y~aPE~~~~~~~~~~~Di-wslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li 236 (337)
T 1o6l_A 160 --ATMKTFCGTPEYLAPEVLEDNDYGRAVDW-WGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLL 236 (337)
T ss_dssp --CCBCCCEECGGGCCGGGGSSSCBCTTHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHH
T ss_pred --CcccccccChhhCChhhhcCCCCCchhhc-ccchhHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHH
Confidence 22345679999999999999999999999 9999999999999876644322111 123467889999
Q ss_pred HHccCCCCCCCC-----CHHHHHH
Q 001988 950 LECTMESPEKRI-----DAKDTIT 968 (985)
Q Consensus 950 ~~cl~~~P~~RP-----t~~ev~~ 968 (985)
.+|+..||.+|| ++.|+++
T Consensus 237 ~~lL~~dP~~R~g~~~~~~~ei~~ 260 (337)
T 1o6l_A 237 AGLLKKDPKQRLGGGPSDAKEVME 260 (337)
T ss_dssp HHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred HHHhhcCHHHhcCCCCCCHHHHHc
Confidence 999999999999 8888875
No 87
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=1e-36 Score=337.92 Aligned_cols=240 Identities=23% Similarity=0.296 Sum_probs=202.9
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc-chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEe
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA-STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLE 802 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e 802 (985)
.++|+..+.||+|+||.||+|+.. +++.||||++..... ...+.+.+|+.++++++||||+++++++.+++..++|||
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e 85 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence 468999999999999999999876 789999999875532 234668899999999999999999999999999999999
Q ss_pred ccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCCc
Q 001988 803 YMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDES 882 (985)
Q Consensus 803 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~~ 882 (985)
|+++|+|.+++.... .+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++.+......
T Consensus 86 ~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~L---H~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~ 161 (323)
T 3tki_A 86 YCSGGELFDRIEPDI-GMPEPDAQRFFHQLMAGVVYL---HGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRE 161 (323)
T ss_dssp CCTTEEGGGGSBTTT-BCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEE
T ss_pred cCCCCcHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHH---HHCCccccccchHHEEEeCCCCEEEEEeeccceeccCCcc
Confidence 999999999997653 689999999999999999999 7899999999999999999999999999999876543333
Q ss_pred ceecccccccccccccccccCcc-chhhhcccccccchhhhcccccccCcchhh--------------hhHHHHHHHHHH
Q 001988 883 TMRTQTLATIGYMAPDEIFVGEL-SLKRWVNDLLPVSLVEVVDKSLLSGEEKHF--------------AAKEQCLLSIFS 947 (985)
Q Consensus 883 ~~~~~~~gt~~y~aPE~~~~~~~-~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~--------------~~~~~~~~~l~~ 947 (985)
......+||+.|+|||.+.+..+ +.++|+ |++|+++++++++..++...... .....++.++.+
T Consensus 162 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di-wslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (323)
T 3tki_A 162 RLLNKMCGTLPYVAPELLKRREFHAEPVDV-WSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLA 240 (323)
T ss_dssp CCBCSCCSCGGGSCHHHHHCSSBCHHHHHH-HHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTTSTTGGGSCHHHHH
T ss_pred cccCCCccCcCccCcHHhccCCCCCCcccH-HHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcccccCCccccCCHHHHH
Confidence 33445679999999999988776 778999 99999999999998766432211 112335678899
Q ss_pred HHHHccCCCCCCCCCHHHHHHH
Q 001988 948 LALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 948 l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
++.+|+..||.+||++.|+++.
T Consensus 241 li~~~L~~dP~~R~t~~eil~h 262 (323)
T 3tki_A 241 LLHKILVENPSARITIPDIKKD 262 (323)
T ss_dssp HHHHHSCSSTTTSCCHHHHTTC
T ss_pred HHHHHccCChhhCcCHHHHhhC
Confidence 9999999999999999999763
No 88
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=2e-36 Score=335.96 Aligned_cols=280 Identities=21% Similarity=0.268 Sum_probs=200.0
Q ss_pred cCChhHHHHHHHHHHhcccCCCCcccCCC----CCCCCcceeeeEEEeC--------CCCeEEEEEecCCcccccCchhc
Q 001988 26 SNISTDQQALLALKDHITYDPTNLLGTNW----TSNASICSWIGIICDV--------NSHKVTTLNLSSFNLQGTIPPEI 93 (985)
Q Consensus 26 ~~~~~~~~aLl~~k~~~~~~~~~~~~s~w----~~~~~~c~w~gv~c~~--------~~~~v~~l~L~~~~l~g~~~~~l 93 (985)
....+|++||++||+++..||.+.+++ | ....++|.|.|++|+. ...+|+.|+|++++++ .+|+.+
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~-w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSA-WRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHH-HHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhh-hcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 455789999999999998788888776 8 4567899999999952 3467899999999988 888888
Q ss_pred ccccccceecccCCcCCCCCCcccccCCCCcEEEccCcccCCCCccccccCCccceeeeccccccCCCChhHhhhccccc
Q 001988 94 ANLSSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQLSGSLSSFTFNTSSILDIRLSKNKLSGKLPENICNHLRYLK 173 (985)
Q Consensus 94 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~g~lp~~~~~~l~~L~ 173 (985)
+++++|++|+|++|.++ .+|..++.+++|++|+|++|+++ .+|..+..+++|++|++++|++.+.+|..+..
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~------ 172 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS------ 172 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE------
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh------
Confidence 88999999999999988 78888888888999988888887 55666666666666666666666555554311
Q ss_pred eecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEEEecCCc
Q 001988 174 HLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGFNN 253 (985)
Q Consensus 174 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 253 (985)
..++..|+++++|++|+|++|+++ .+|..++++++|++|++++|++++ +|..++.+++|++|+|++|+
T Consensus 173 ----------~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 173 ----------TDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCT 240 (328)
T ss_dssp ----------EC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCT
T ss_pred ----------ccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCc
Confidence 011223445777777777777777 667777777777777777777773 55567777777777777777
Q ss_pred CcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccEEEccCcccc
Q 001988 254 LTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMGSNSFS 328 (985)
Q Consensus 254 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 328 (985)
+.+.+|..+.++++|++|+|++|++.+.+|..+ ..+++|++|+|++|++.+.+|..++++++|+.+++..|.+.
T Consensus 241 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI-HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG-GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred chhhhHHHhcCCCCCCEEECCCCCchhhcchhh-hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 777777777777777777777666666666553 35566666666666666666666666666666655554443
No 89
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=4.8e-36 Score=329.12 Aligned_cols=248 Identities=16% Similarity=0.162 Sum_probs=212.5
Q ss_pred hcCccCCceeeccCceeEEEEEE-cCCcEEEEEEeccCCcchHHHHHHHHHHHHhc-CCCCeeeEEeeeecCCceEEEEe
Q 001988 725 TDNFAENNIIGIGGFGSVYRARL-EDGVEIAIKVFHPQCASTLKSFEAECEVIKNI-RHRNLVKIISSCSNDDFKALVLE 802 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l-~h~niv~l~~~~~~~~~~~lv~e 802 (985)
.++|...+.||+|+||.||+|+. .+++.||||++.... ....+.+|+++++++ +|++++++++++.+....++|||
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e 86 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID 86 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEE
Confidence 46799999999999999999996 579999999986542 335678999999999 79999999999999999999999
Q ss_pred ccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCc-----EEEecccCceecc
Q 001988 803 YMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMV-----AHLSDFGMAKLLS 877 (985)
Q Consensus 803 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~-----~kl~DfGla~~~~ 877 (985)
|+ +++|.+++...+..+++..+..++.|+++||+|| |++||+||||||+||+++.++. +||+|||+++.+.
T Consensus 87 ~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~l---H~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~ 162 (298)
T 1csn_A 87 LL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSI---HEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYR 162 (298)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHH---HTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESB
T ss_pred ec-CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH---HhCCEecCCCCHHHEEeccCCCCCCCeEEEEECccccccc
Confidence 99 9999999998766799999999999999999999 7899999999999999987776 9999999999876
Q ss_pred CCCCc-----ceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh----------------h
Q 001988 878 GEDES-----TMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF----------------A 936 (985)
Q Consensus 878 ~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~----------------~ 936 (985)
..... .......||+.|+|||.+.+..++.++|+ |++|++++++++++.++...... .
T Consensus 163 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di-~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~ 241 (298)
T 1csn_A 163 DPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDL-EALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTP 241 (298)
T ss_dssp CTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHH-HHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSC
T ss_pred cccccccccccCccCCCCCcccCCchhhcCCCCChHHHH-HHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCcc
Confidence 43321 12345579999999999999999999999 99999999999998876542110 0
Q ss_pred h---HHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhcc
Q 001988 937 A---KEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLSK 979 (985)
Q Consensus 937 ~---~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~~ 979 (985)
. ...+++++.+++.+||..+|++||++.++++.|+++.++...
T Consensus 242 ~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~~~ 287 (298)
T 1csn_A 242 LRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNT 287 (298)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCC
Confidence 0 013467899999999999999999999999999999886544
No 90
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.3e-36 Score=332.61 Aligned_cols=246 Identities=24% Similarity=0.351 Sum_probs=205.5
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc---chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA---STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~---~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv 800 (985)
.++|+..+.||+|+||.||+|+.. +++.||+|++..... ...+.+.+|+.++++++||||+++++++.+++..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 89 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV 89 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence 467899999999999999999865 789999999865422 2346789999999999999999999999999999999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCC
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGED 880 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~ 880 (985)
|||+++|+|.+++...+ .+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++.+....
T Consensus 90 ~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~l---H~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 165 (294)
T 4eqm_A 90 MEYIEGPTLSEYIESHG-PLSVDTAINFTNQILDGIKHA---HDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETS 165 (294)
T ss_dssp EECCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHH---HHTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC----
T ss_pred EeCCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HHCCcccCCCCHHHEEECCCCCEEEEeCCCcccccccc
Confidence 99999999999998764 689999999999999999999 78999999999999999999999999999998764322
Q ss_pred CcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh----------------hHHHHHHH
Q 001988 881 ESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA----------------AKEQCLLS 944 (985)
Q Consensus 881 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~----------------~~~~~~~~ 944 (985)
........||+.|+|||.+.+..++.++|+ |++|++++++++++.++....... ....+++.
T Consensus 166 -~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di-~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (294)
T 4eqm_A 166 -LTQTNHVLGTVQYFSPEQAKGEATDECTDI-YSIGIVLYEMLVGEPPFNGETAVSIAIKHIQDSVPNVTTDVRKDIPQS 243 (294)
T ss_dssp ----------CCSSCCHHHHHTCCCCTTHHH-HHHHHHHHHHHHSSCSSCSSCHHHHHHHHHSSCCCCHHHHSCTTSCHH
T ss_pred -ccccCccccCccccCHhHhcCCCCCchHhH-HHHHHHHHHHHhCCCCCCCCChHHHHHHHhhccCCCcchhcccCCCHH
Confidence 222344569999999999999999999999 999999999999987765432111 11235678
Q ss_pred HHHHHHHccCCCCCCCC-CHHHHHHHHHHhHhh
Q 001988 945 IFSLALECTMESPEKRI-DAKDTITRLLKIRDT 976 (985)
Q Consensus 945 l~~l~~~cl~~~P~~RP-t~~ev~~~L~~i~~~ 976 (985)
+.+++.+|+..||.+|| ++.++.+.|..+...
T Consensus 244 l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~ 276 (294)
T 4eqm_A 244 LSNVILRATEKDKANRYKTIQEMKDDLSSVLHE 276 (294)
T ss_dssp HHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSS
T ss_pred HHHHHHHHhcCCHhHccccHHHHHHHHHHHHhh
Confidence 99999999999999999 999999999887654
No 91
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=2.7e-36 Score=325.47 Aligned_cols=246 Identities=24% Similarity=0.350 Sum_probs=211.2
Q ss_pred hcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEecc
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLEYM 804 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e~~ 804 (985)
.++|+..+.||+|+||.||+|...+++.||+|++..... ..+.+.+|++++++++||||+++++++.+.+..++||||+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (267)
T 3t9t_A 7 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFM 85 (267)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCC
T ss_pred hhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCC
Confidence 467888999999999999999998899999999986643 3467899999999999999999999999999999999999
Q ss_pred CCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCCcce
Q 001988 805 SNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDESTM 884 (985)
Q Consensus 805 ~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~ 884 (985)
++++|.+++......+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++..... ....
T Consensus 86 ~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l---H~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~-~~~~ 161 (267)
T 3t9t_A 86 EHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYL---EEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDD-QYTS 161 (267)
T ss_dssp TTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHH---HHTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCH-HHHS
T ss_pred CCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHH---HhCCcccCCCchheEEECCCCCEEEcccccccccccc-cccc
Confidence 99999999988766789999999999999999999 7899999999999999999999999999999876321 1112
Q ss_pred ecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhhh------------hHHHHHHHHHHHHHH
Q 001988 885 RTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHFA------------AKEQCLLSIFSLALE 951 (985)
Q Consensus 885 ~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~~------------~~~~~~~~l~~l~~~ 951 (985)
.....+++.|+|||.+....++.++|+ |++|++++++++ +..+........ .+..++.++.+++.+
T Consensus 162 ~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~~l~~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~ 240 (267)
T 3t9t_A 162 STGTKFPVKWASPEVFSFSRYSSKSDV-WSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNH 240 (267)
T ss_dssp TTSTTCCGGGCCHHHHHHCCCCHHHHH-HHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHH
T ss_pred cccccccccccChhhhcCCCccchhch-hhhHHHHHHHhccCCCCCCCCCHHHHHHHHhcCCcCCCCccCcHHHHHHHHH
Confidence 233457889999999999999999999 999999999998 666544322111 112246779999999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhHhh
Q 001988 952 CTMESPEKRIDAKDTITRLLKIRDT 976 (985)
Q Consensus 952 cl~~~P~~RPt~~ev~~~L~~i~~~ 976 (985)
||..+|.+||++.|+++.|+++.+.
T Consensus 241 ~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (267)
T 3t9t_A 241 CWRERPEDRPAFSRLLRQLAEIAES 265 (267)
T ss_dssp HTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HccCChhhCcCHHHHHHHHHHHHhc
Confidence 9999999999999999999998763
No 92
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=1.5e-36 Score=353.01 Aligned_cols=254 Identities=23% Similarity=0.403 Sum_probs=213.9
Q ss_pred HHHHHhcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEE
Q 001988 720 ELLRATDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKAL 799 (985)
Q Consensus 720 ~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~l 799 (985)
++....++|...+.||+|+||.||+|.++++..||||+++... ...+.+.+|++++++++||||+++++++. .+..++
T Consensus 182 ~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~l 259 (454)
T 1qcf_A 182 AWEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYI 259 (454)
T ss_dssp CSBCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEE
T ss_pred ceeechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEE
Confidence 3444667899999999999999999999888999999998653 44678999999999999999999999987 567899
Q ss_pred EEeccCCCChHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccC
Q 001988 800 VLEYMSNGSLEDCLHSS-NCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSG 878 (985)
Q Consensus 800 v~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~ 878 (985)
||||+++|+|.+++... ...+++..+..++.||+.||+|| |+++|+||||||+|||++.++.+||+|||+++.+..
T Consensus 260 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~L---H~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~ 336 (454)
T 1qcf_A 260 ITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFI---EQRNYIHRDLRAANILVSASLVCKIADFGLARVIED 336 (454)
T ss_dssp EECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHH---HHTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCC
T ss_pred EEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH---HhCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCC
Confidence 99999999999999854 23578899999999999999999 788999999999999999999999999999987642
Q ss_pred CCCcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhh------------hhHHHHHHHH
Q 001988 879 EDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHF------------AAKEQCLLSI 945 (985)
Q Consensus 879 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~------------~~~~~~~~~l 945 (985)
.. ........+++.|+|||.+..+.++.++|+ |++|++++|+++ +..+....... +.+..+++++
T Consensus 337 ~~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv-wslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l 414 (454)
T 1qcf_A 337 NE-YTAREGAKFPIKWTAPEAINFGSFTIKSDV-WSFGILLMEIVTYGRIPYPGMSNPEVIRALERGYRMPRPENCPEEL 414 (454)
T ss_dssp HH-HHTTCSSSSCGGGSCHHHHHHCCCCHHHHH-HHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHTCCCCCCTTSCHHH
T ss_pred Cc-eeccCCCcccccccCHHHhccCCCCcHHHH-HhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHH
Confidence 21 112233346789999999999999999999 999999999998 77655432111 1233467889
Q ss_pred HHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhccc
Q 001988 946 FSLALECTMESPEKRIDAKDTITRLLKIRDTLSKR 980 (985)
Q Consensus 946 ~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~~~ 980 (985)
.+++.+||..||++||++.++++.|+.+.......
T Consensus 415 ~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~~~~~ 449 (454)
T 1qcf_A 415 YNIMMRCWKNRPEERPTFEYIQSVLDDFYTATESQ 449 (454)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHTSSSSSCCS
T ss_pred HHHHHHHccCChhHCcCHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999987654443
No 93
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=5e-36 Score=336.52 Aligned_cols=236 Identities=21% Similarity=0.277 Sum_probs=203.6
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcc------hHHHHHHHHHHHHhcCCCCeeeEEeeeecCCce
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCAS------TLKSFEAECEVIKNIRHRNLVKIISSCSNDDFK 797 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~------~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~ 797 (985)
.++|...+.||+|+||.||+|+.. +|+.||+|+++..... ..+.+.+|+.++++++||||+++++++.+.+..
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~ 90 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV 90 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence 467999999999999999999976 7899999999765322 246789999999999999999999999999999
Q ss_pred EEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCC----cEEEecccCc
Q 001988 798 ALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDM----VAHLSDFGMA 873 (985)
Q Consensus 798 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~----~~kl~DfGla 873 (985)
++||||++||+|.+++...+ .+++..+..++.||+.||+|| |+.||+||||||+||+++.++ .+||+|||++
T Consensus 91 ~lv~e~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~L---H~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a 166 (361)
T 2yab_A 91 VLILELVSGGELFDFLAQKE-SLSEEEATSFIKQILDGVNYL---HTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLA 166 (361)
T ss_dssp EEEEECCCSCBHHHHHTTCS-CCBHHHHHHHHHHHHHHHHHH---HHTTEECCCCSGGGEEESCTTSSSCCEEECCCSSC
T ss_pred EEEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HHCCcccCCCCHHHEEEeCCCCCccCEEEEecCCc
Confidence 99999999999999997654 689999999999999999999 789999999999999998877 7999999999
Q ss_pred eeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh---------------hH
Q 001988 874 KLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA---------------AK 938 (985)
Q Consensus 874 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~---------------~~ 938 (985)
+.+.... .....+||+.|+|||.+....++.++|+ |++|++++++++|..++....... ..
T Consensus 167 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Di-wslGvil~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~ 242 (361)
T 2yab_A 167 HEIEDGV---EFKNIFGTPEFVAPEIVNYEPLGLEADM-WSIGVITYILLSGASPFLGDTKQETLANITAVSYDFDEEFF 242 (361)
T ss_dssp EECCTTC---CCCCCCSCGGGCCHHHHTTCCCCTHHHH-HHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHH
T ss_pred eEcCCCC---ccccCCCCccEECchHHcCCCCCccccH-HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCchhc
Confidence 8875322 2334579999999999999999999999 999999999999887664332111 11
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 939 EQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 939 ~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
...++++.+++.+|+..||.+||++.|+++
T Consensus 243 ~~~s~~~~~li~~~L~~dP~~R~t~~e~l~ 272 (361)
T 2yab_A 243 SQTSELAKDFIRKLLVKETRKRLTIQEALR 272 (361)
T ss_dssp TTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred cCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 234677899999999999999999999884
No 94
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=6.1e-36 Score=333.92 Aligned_cols=251 Identities=24% Similarity=0.378 Sum_probs=211.2
Q ss_pred HhcCccCCceeeccCceeEEEEEEc--------CCcEEEEEEeccCCc-chHHHHHHHHHHHHhc-CCCCeeeEEeeeec
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE--------DGVEIAIKVFHPQCA-STLKSFEAECEVIKNI-RHRNLVKIISSCSN 793 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~--------~~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l-~h~niv~l~~~~~~ 793 (985)
..++|...+.||+|+||.||+|+.. +++.||||+++.... ...+.+.+|+++++++ +||||+++++++.+
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~ 112 (334)
T 2pvf_A 33 PRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ 112 (334)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred CHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEcc
Confidence 3578999999999999999999863 567899999976533 3456789999999999 89999999999999
Q ss_pred CCceEEEEeccCCCChHHHhhcCC---------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEE
Q 001988 794 DDFKALVLEYMSNGSLEDCLHSSN---------------CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVL 858 (985)
Q Consensus 794 ~~~~~lv~e~~~~gsL~~~l~~~~---------------~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nil 858 (985)
.+..++||||+++|+|.+++.... ..+++..++.++.|++.||+|| |++||+||||||+||+
T Consensus 113 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~L---H~~~ivH~Dlkp~NIl 189 (334)
T 2pvf_A 113 DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYL---ASQKCIHRDLAARNVL 189 (334)
T ss_dssp SSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEE
T ss_pred CCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHH---HhCCeeCCCCccceEE
Confidence 999999999999999999998653 2488999999999999999999 7889999999999999
Q ss_pred EcCCCcEEEecccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhhh-
Q 001988 859 LDEDMVAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHFA- 936 (985)
Q Consensus 859 l~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~~- 936 (985)
++.++.+||+|||+++...............+|+.|+|||.+.+..++.++|+ |++|++++++++ +..+........
T Consensus 190 l~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~ellt~g~~p~~~~~~~~~ 268 (334)
T 2pvf_A 190 VTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDV-WSFGVLMWEIFTLGGSPYPGIPVEEL 268 (334)
T ss_dssp ECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHH-HHHHHHHHHHHTTSCCSSTTCCHHHH
T ss_pred EcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHH-HHHHHHHHHHHhCCCCCcCcCCHHHH
Confidence 99999999999999988754443333344567889999999999999999999 999999999998 666544322111
Q ss_pred -----------hHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhc
Q 001988 937 -----------AKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLS 978 (985)
Q Consensus 937 -----------~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~ 978 (985)
.+..++.++.+++.+||..+|.+||++.|+++.|+++.+...
T Consensus 269 ~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~~~ 321 (334)
T 2pvf_A 269 FKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLTT 321 (334)
T ss_dssp HHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccc
Confidence 122356789999999999999999999999999999887543
No 95
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=6.8e-36 Score=332.93 Aligned_cols=245 Identities=21% Similarity=0.205 Sum_probs=209.5
Q ss_pred hcCccCCceeeccCceeEEEEEE-cCCcEEEEEEeccCCcchHHHHHHHHHHHHhc-CCCCeeeEEeeeecCCceEEEEe
Q 001988 725 TDNFAENNIIGIGGFGSVYRARL-EDGVEIAIKVFHPQCASTLKSFEAECEVIKNI-RHRNLVKIISSCSNDDFKALVLE 802 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l-~h~niv~l~~~~~~~~~~~lv~e 802 (985)
.++|...+.||+|+||.||+|+. .+++.||||++..... .+.+.+|+++++++ +||||+++++++...+..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e 85 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLE 85 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEE
Confidence 46789999999999999999996 4789999999875532 34688999999999 99999999999999999999999
Q ss_pred ccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCc-----EEEecccCceecc
Q 001988 803 YMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMV-----AHLSDFGMAKLLS 877 (985)
Q Consensus 803 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~-----~kl~DfGla~~~~ 877 (985)
|+ +++|.+++......+++..+..++.|++.||+|| |+.||+||||||+||+++.++. +||+|||+++.+.
T Consensus 86 ~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~L---H~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~ 161 (330)
T 2izr_A 86 LL-GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYV---HSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYI 161 (330)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESB
T ss_pred eC-CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH---HhCCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeee
Confidence 99 9999999987666899999999999999999999 7889999999999999999887 9999999999875
Q ss_pred CCCCcc-----eecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhhh--------------H
Q 001988 878 GEDEST-----MRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA--------------K 938 (985)
Q Consensus 878 ~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~--------------~ 938 (985)
...... ......||+.|+|||.+.+..++.++|+ |++|+++++++++..++........ +
T Consensus 162 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di-~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~ 240 (330)
T 2izr_A 162 DPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDL-EALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATP 240 (330)
T ss_dssp CTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHH-HHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHHSC
T ss_pred cCCCCccccccccCCcCCCccccChHHHcCCCCCchhHH-HHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhccCC
Confidence 433221 1245679999999999999999999999 9999999999999877654211100 0
Q ss_pred -----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhh
Q 001988 939 -----EQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTL 977 (985)
Q Consensus 939 -----~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~ 977 (985)
+.++ ++.+++..||..+|.+||++.++.+.|+++.++.
T Consensus 241 ~~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~~ 283 (330)
T 2izr_A 241 IEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRK 283 (330)
T ss_dssp HHHHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHc
Confidence 0134 8999999999999999999999999999888764
No 96
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=3.1e-36 Score=331.32 Aligned_cols=246 Identities=22% Similarity=0.415 Sum_probs=205.5
Q ss_pred hcCccCCceeeccCceeEEEEEE-----cCCcEEEEEEeccCC-cchHHHHHHHHHHHHhcCCCCeeeEEeeeecC--Cc
Q 001988 725 TDNFAENNIIGIGGFGSVYRARL-----EDGVEIAIKVFHPQC-ASTLKSFEAECEVIKNIRHRNLVKIISSCSND--DF 796 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~-----~~~~~vAvK~~~~~~-~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~--~~ 796 (985)
.+.|+..+.||+|+||.||+|++ .+++.||+|+++... ....+.+.+|++++++++||||+++++++... ..
T Consensus 20 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 99 (302)
T 4e5w_A 20 KRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNG 99 (302)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CC
T ss_pred hhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCce
Confidence 35688899999999999999984 378999999998553 23457789999999999999999999999876 66
Q ss_pred eEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceec
Q 001988 797 KALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLL 876 (985)
Q Consensus 797 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~ 876 (985)
.++||||+++|+|.+++......+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++.+
T Consensus 100 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~l---H~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~ 176 (302)
T 4e5w_A 100 IKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYL---GSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAI 176 (302)
T ss_dssp EEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEEEETTEEEECCCTTCEEC
T ss_pred EEEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHh---hcCCcccCCCchheEEEcCCCCEEECcccccccc
Confidence 8999999999999999977766799999999999999999999 7899999999999999999999999999999887
Q ss_pred cCCCCc-ceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcch------------h---------
Q 001988 877 SGEDES-TMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEK------------H--------- 934 (985)
Q Consensus 877 ~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~------------~--------- 934 (985)
...... .......||..|+|||.+.+..++.++|+ |++|+++++++++..+..... .
T Consensus 177 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (302)
T 4e5w_A 177 ETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDV-WSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNT 255 (302)
T ss_dssp CTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHH-HHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHH
T ss_pred cCCCcceeccCCCCCCccccCCeeecCCCCCcchhH-HHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHH
Confidence 544332 22344568889999999999999999999 999999999999765432110 0
Q ss_pred ------hhhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhH
Q 001988 935 ------FAAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIR 974 (985)
Q Consensus 935 ------~~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~ 974 (985)
...+..+++++.+++.+||..||.+||++.|+++.|+++.
T Consensus 256 ~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll 301 (302)
T 4e5w_A 256 LKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL 301 (302)
T ss_dssp HHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HhccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence 0011234578999999999999999999999999999875
No 97
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=8.7e-36 Score=327.53 Aligned_cols=242 Identities=26% Similarity=0.355 Sum_probs=197.7
Q ss_pred hcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHh--cCCCCeeeEEeeeec----CCceE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKN--IRHRNLVKIISSCSN----DDFKA 798 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~--l~h~niv~l~~~~~~----~~~~~ 798 (985)
.++|+..+.||+|+||.||+|+. +++.||||++... ....+.+|.+++.. ++||||+++++++.. ....+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~ 82 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW 82 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeE
Confidence 46899999999999999999998 6899999998643 34566778887777 799999999998754 34578
Q ss_pred EEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHh-----cCCCCeEeCCCCCCCEEEcCCCcEEEecccCc
Q 001988 799 LVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHF-----GHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMA 873 (985)
Q Consensus 799 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~-----~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla 873 (985)
+||||+++|+|.++++.. .+++..+.+++.|++.||+|||. .++++|+||||||+||+++.++.+||+|||++
T Consensus 83 lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a 160 (301)
T 3q4u_A 83 LITHYHEMGSLYDYLQLT--TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLA 160 (301)
T ss_dssp EEECCCTTCBHHHHHTTC--CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred EehhhccCCCHHHHHhhc--ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCe
Confidence 999999999999999654 68999999999999999999942 11899999999999999999999999999999
Q ss_pred eeccCCCCcc--eecccccccccccccccccC------ccchhhhcccccccchhhhccc----------ccccCcc-h-
Q 001988 874 KLLSGEDEST--MRTQTLATIGYMAPDEIFVG------ELSLKRWVNDLLPVSLVEVVDK----------SLLSGEE-K- 933 (985)
Q Consensus 874 ~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~dv~~~~g~~~~~i~~~----------~~~~~~~-~- 933 (985)
+......... ......||+.|+|||.+.+. .++.++|+ |++|+++++++++ ..+.... +
T Consensus 161 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Dv-wslG~il~el~tg~~~~~~~~~~~~pf~~~~~~ 239 (301)
T 3q4u_A 161 VMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDI-WAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPN 239 (301)
T ss_dssp EEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHH-HHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCS
T ss_pred eecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhH-HHHHHHHHHHHhhhcCccccccccccccccCCC
Confidence 8765433321 12334799999999998876 56688999 9999999999988 2222110 0
Q ss_pred ---------------------hhhhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 001988 934 ---------------------HFAAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKI 973 (985)
Q Consensus 934 ---------------------~~~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i 973 (985)
.......+++++.+++.+||..||.+||++.|+++.|+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 240 DPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp SCCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred CcchhhhhHHHhccCCCCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 0001234678899999999999999999999999999876
No 98
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=3.8e-36 Score=332.89 Aligned_cols=260 Identities=21% Similarity=0.320 Sum_probs=217.1
Q ss_pred ccCHHHHHHHhcCccCCceeeccCceeEEEEEE------cCCcEEEEEEeccCCcc-hHHHHHHHHHHHHhc-CCCCeee
Q 001988 715 RFSYFELLRATDNFAENNIIGIGGFGSVYRARL------EDGVEIAIKVFHPQCAS-TLKSFEAECEVIKNI-RHRNLVK 786 (985)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vAvK~~~~~~~~-~~~~~~~E~~il~~l-~h~niv~ 786 (985)
++...++....++|...+.||+|+||.||+|+. .+++.||||+++..... ..+.+.+|+++++++ +||||++
T Consensus 16 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~ 95 (316)
T 2xir_A 16 PYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVN 95 (316)
T ss_dssp CCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred cccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeee
Confidence 345556666778999999999999999999974 35688999999865332 346789999999999 7899999
Q ss_pred EEeeeecCC-ceEEEEeccCCCChHHHhhcCCCC---------------CCHHHHHHHHHHHHHHHHHHHhcCCCCeEeC
Q 001988 787 IISSCSNDD-FKALVLEYMSNGSLEDCLHSSNCA---------------LNIFCRLNIMIDIASALEYLHFGHSTPIIHC 850 (985)
Q Consensus 787 l~~~~~~~~-~~~lv~e~~~~gsL~~~l~~~~~~---------------~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHr 850 (985)
+++++...+ ..++||||+++|+|.+++...... +++..+..++.|+++||+|| |++||+||
T Consensus 96 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~l---H~~~i~H~ 172 (316)
T 2xir_A 96 LLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFL---ASRKCIHR 172 (316)
T ss_dssp EEEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHH---HHTTCCCS
T ss_pred EEEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHH---HhCCcccc
Confidence 999987754 589999999999999999875432 78999999999999999999 78899999
Q ss_pred CCCCCCEEEcCCCcEEEecccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcc-ccccc
Q 001988 851 DLKPSNVLLDEDMVAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLS 929 (985)
Q Consensus 851 Dlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~ 929 (985)
||||+||+++.++.+||+|||+++.+.............+|+.|+|||.+.+..++.++|+ |++|++++++++ +..+.
T Consensus 173 dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di-~slG~il~~l~t~g~~p~ 251 (316)
T 2xir_A 173 DLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDV-WSFGVLLWEIFSLGASPY 251 (316)
T ss_dssp CCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHH-HHHHHHHHHHHTTSCCSS
T ss_pred cCccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHH-HHHHHHHHHHHhCCCCCC
Confidence 9999999999999999999999987755444444455668999999999999999999999 999999999997 76655
Q ss_pred Ccchhh-------------hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhc
Q 001988 930 GEEKHF-------------AAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLS 978 (985)
Q Consensus 930 ~~~~~~-------------~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~ 978 (985)
...... ..+..+++++.+++.+||..||.+||++.|+++.|+.+.+...
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~ 313 (316)
T 2xir_A 252 PGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQANA 313 (316)
T ss_dssp TTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred cccchhHHHHHHhccCccCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhc
Confidence 332111 1122356789999999999999999999999999999987644
No 99
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=5e-36 Score=325.98 Aligned_cols=248 Identities=21% Similarity=0.321 Sum_probs=197.3
Q ss_pred HhcCccCCceeeccCceeEEEEEEc----CCcEEEEEEeccCCc-chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceE
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE----DGVEIAIKVFHPQCA-STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKA 798 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~ 798 (985)
..++|+..+.||+|+||.||+|... .+..||+|+++.... ...+.+.+|+.++++++||||+++++++. .+..+
T Consensus 13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~ 91 (281)
T 1mp8_A 13 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVW 91 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCE
T ss_pred ehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccE
Confidence 3468899999999999999999864 345799999876432 33567899999999999999999999985 45678
Q ss_pred EEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccC
Q 001988 799 LVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSG 878 (985)
Q Consensus 799 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~ 878 (985)
+||||+++|+|.+++......+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++....
T Consensus 92 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~l---H~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 168 (281)
T 1mp8_A 92 IIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYL---ESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 168 (281)
T ss_dssp EEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCSGGGEEEEETTEEEECC---------
T ss_pred EEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH---HhCCeecccccHHHEEECCCCCEEECccccccccCc
Confidence 99999999999999987766799999999999999999999 788999999999999999999999999999987643
Q ss_pred CCCcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhh------------hhHHHHHHHH
Q 001988 879 EDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHF------------AAKEQCLLSI 945 (985)
Q Consensus 879 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~------------~~~~~~~~~l 945 (985)
... .......+|+.|+|||.+....++.++|+ |++|++++++++ +..++...... ..+..+++++
T Consensus 169 ~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~~l~ell~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~l 246 (281)
T 1mp8_A 169 STY-YKASKGKLPIKWMAPESINFRRFTSASDV-WMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTL 246 (281)
T ss_dssp -----------CCGGGCCHHHHHHCCCSHHHHH-HHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTCCHHH
T ss_pred ccc-cccccCCCcccccChhhcccCCCCCccCc-hHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHcCCCCCCCCCCCHHH
Confidence 222 12233457889999999999999999999 999999999986 66544322111 1223457789
Q ss_pred HHHHHHccCCCCCCCCCHHHHHHHHHHhHhhh
Q 001988 946 FSLALECTMESPEKRIDAKDTITRLLKIRDTL 977 (985)
Q Consensus 946 ~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~ 977 (985)
.+++.+||..||++||++.|+++.|+++.+..
T Consensus 247 ~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~ 278 (281)
T 1mp8_A 247 YSLMTKCWAYDPSRRPRFTELKAQLSTILEEE 278 (281)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999987653
No 100
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=7e-36 Score=329.05 Aligned_cols=243 Identities=25% Similarity=0.345 Sum_probs=200.5
Q ss_pred cCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEeccC
Q 001988 726 DNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLEYMS 805 (985)
Q Consensus 726 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e~~~ 805 (985)
++|+..+.||+|+||.||+|+.. ++.||||++... ...+.+.+|++++++++||||+++++++.+ ..++||||++
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~lv~e~~~ 82 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACLN--PVCLVMEYAE 82 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCTT--TTEEEEECCT
T ss_pred hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEcC--CcEEEEEcCC
Confidence 57888999999999999999985 789999998644 345788999999999999999999999874 4789999999
Q ss_pred CCChHHHhhcCCC--CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCc-EEEecccCceeccCCCCc
Q 001988 806 NGSLEDCLHSSNC--ALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMV-AHLSDFGMAKLLSGEDES 882 (985)
Q Consensus 806 ~gsL~~~l~~~~~--~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~-~kl~DfGla~~~~~~~~~ 882 (985)
+|+|.+++..... .+++..++.++.|+++||+|||..|.+||+||||||+||+++.++. +||+|||+++.....
T Consensus 83 ~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~--- 159 (307)
T 2eva_A 83 GGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH--- 159 (307)
T ss_dssp TCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC----------
T ss_pred CCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc---
Confidence 9999999986542 4788999999999999999997655589999999999999998886 799999999765321
Q ss_pred ceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh--------------hhHHHHHHHHHHH
Q 001988 883 TMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF--------------AAKEQCLLSIFSL 948 (985)
Q Consensus 883 ~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~--------------~~~~~~~~~l~~l 948 (985)
.....||+.|+|||.+.+..++.++|+ |++|++++++++++.+....... .....++..+.++
T Consensus 160 --~~~~~gt~~y~aPE~~~~~~~~~~~Di-~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 236 (307)
T 2eva_A 160 --MTNNKGSAAWMAPEVFEGSNYSEKCDV-FSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPPLIKNLPKPIESL 236 (307)
T ss_dssp -------CCTTSSCHHHHTCCCCCTHHHH-HHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTCCCCCBTTCCHHHHHH
T ss_pred --cccCCCCCceEChhhhCCCCCCcHHHH-HHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCCCCCcccccCHHHHHH
Confidence 123459999999999999999999999 99999999999988765432110 1122356789999
Q ss_pred HHHccCCCCCCCCCHHHHHHHHHHhHhhhcc
Q 001988 949 ALECTMESPEKRIDAKDTITRLLKIRDTLSK 979 (985)
Q Consensus 949 ~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~~ 979 (985)
+.+||..||.+||++.|+++.|+.+.+.+..
T Consensus 237 i~~~l~~dp~~Rps~~ell~~L~~~~~~~~~ 267 (307)
T 2eva_A 237 MTRCWSKDPSQRPSMEEIVKIMTHLMRYFPG 267 (307)
T ss_dssp HHHHTCSSGGGSCCHHHHHHHHHHHGGGCCC
T ss_pred HHHHhcCChhhCcCHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999876543
No 101
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=8.6e-36 Score=345.92 Aligned_cols=241 Identities=28% Similarity=0.397 Sum_probs=205.7
Q ss_pred HhcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCC-ceEEEEe
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDD-FKALVLE 802 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~-~~~lv~e 802 (985)
..++|+..+.||+|+||.||+|.+. ++.||||+++... ..+.+.+|++++++++||||+++++++.+.+ ..++|||
T Consensus 191 ~~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e 267 (450)
T 1k9a_A 191 NMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE 267 (450)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEE
T ss_pred ChHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEE
Confidence 3467888999999999999999985 7899999998653 4578999999999999999999999987655 7899999
Q ss_pred ccCCCChHHHhhcCCC-CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCC
Q 001988 803 YMSNGSLEDCLHSSNC-ALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDE 881 (985)
Q Consensus 803 ~~~~gsL~~~l~~~~~-~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 881 (985)
|+++|+|.+++...+. .+++..+..++.|++.||+|| |+++|+||||||+||+++.++.+||+|||+++.....
T Consensus 268 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~L---H~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~-- 342 (450)
T 1k9a_A 268 YMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYL---EGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST-- 342 (450)
T ss_dssp CCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCCGGGEEECTTSCEEECCCTTCEECC----
T ss_pred ecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH---HhCCeeCCCCCHhhEEECCCCCEEEeeCCCccccccc--
Confidence 9999999999987643 468999999999999999999 7899999999999999999999999999999864321
Q ss_pred cceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchh------------hhhHHHHHHHHHHH
Q 001988 882 STMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKH------------FAAKEQCLLSIFSL 948 (985)
Q Consensus 882 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~------------~~~~~~~~~~l~~l 948 (985)
.....+++.|+|||.+.+..++.++|+ |++|++++++++ +..+...... ...+..+++++.++
T Consensus 343 ---~~~~~~~~~y~aPE~~~~~~~~~~sDv-wslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~l 418 (450)
T 1k9a_A 343 ---QDTGKLPVKWTAPEALREKKFSTKSDV-WSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYDV 418 (450)
T ss_dssp -------CCCTTTSCHHHHHSSCCCHHHHH-HHHHHHHHHHHTTTCCSSTTSCTTTHHHHHHTTCCCCCCTTCCHHHHHH
T ss_pred ---ccCCCCCcceeCHHHhcCCCCCcHHHH-HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHH
Confidence 112357889999999999999999999 999999999997 7665543211 11234567889999
Q ss_pred HHHccCCCCCCCCCHHHHHHHHHHhHhh
Q 001988 949 ALECTMESPEKRIDAKDTITRLLKIRDT 976 (985)
Q Consensus 949 ~~~cl~~~P~~RPt~~ev~~~L~~i~~~ 976 (985)
+.+||+.||.+||++.++++.|+++.+.
T Consensus 419 i~~cl~~dp~~Rpt~~~l~~~L~~i~~~ 446 (450)
T 1k9a_A 419 MKNCWHLDAATRPTFLQLREQLEHIRTH 446 (450)
T ss_dssp HHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred HHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence 9999999999999999999999998753
No 102
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.6e-36 Score=333.73 Aligned_cols=249 Identities=26% Similarity=0.404 Sum_probs=211.1
Q ss_pred hcCccCCceeeccCceeEEEEEE-----cCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCC--ce
Q 001988 725 TDNFAENNIIGIGGFGSVYRARL-----EDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDD--FK 797 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~-----~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~--~~ 797 (985)
.++|+..+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++||||+++++++...+ ..
T Consensus 40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 119 (326)
T 2w1i_A 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 119 (326)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CC
T ss_pred HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCce
Confidence 35688899999999999999984 368999999998776666778999999999999999999999987654 78
Q ss_pred EEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceecc
Q 001988 798 ALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLS 877 (985)
Q Consensus 798 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~ 877 (985)
++||||+++|+|.+++......+++..+..++.|+++||+|| |++||+||||||+||+++.++.+||+|||+++...
T Consensus 120 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~L---H~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~ 196 (326)
T 2w1i_A 120 KLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNILVENENRVKIGDFGLTKVLP 196 (326)
T ss_dssp EEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHH---HHTTEECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred EEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH---HhCCEeccCCCcceEEEcCCCcEEEecCcchhhcc
Confidence 999999999999999988766799999999999999999999 78999999999999999999999999999999875
Q ss_pred CCCCcce-ecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchh----------------------
Q 001988 878 GEDESTM-RTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKH---------------------- 934 (985)
Q Consensus 878 ~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~---------------------- 934 (985)
....... .....++..|+|||.+.+..++.++|+ |++|+++++++++..+......
T Consensus 197 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (326)
T 2w1i_A 197 QDKEYYKVKEPGESPIFWYAPESLTESKFSVASDV-WSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIEL 275 (326)
T ss_dssp SSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHH-HHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHH
T ss_pred ccccccccccCCCCceeEECchhhcCCCCCchhhH-HHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHHHH
Confidence 4332211 223457888999999999999999999 9999999999997654432110
Q ss_pred ------hhhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhh
Q 001988 935 ------FAAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTL 977 (985)
Q Consensus 935 ------~~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~ 977 (985)
.+.+..+++++.+++.+||..||.+||++.|+++.|+++++.+
T Consensus 276 ~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~l 324 (326)
T 2w1i_A 276 LKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQM 324 (326)
T ss_dssp HHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred hhcCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHh
Confidence 0012235678999999999999999999999999999998765
No 103
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=5e-36 Score=334.37 Aligned_cols=241 Identities=24% Similarity=0.332 Sum_probs=196.9
Q ss_pred HhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC-cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCC------
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC-ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDD------ 795 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~-~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~------ 795 (985)
..++|+..+.||+|+||.||+|+.. +++.||||+++... ....+.+.+|++++++++||||+++++++.+..
T Consensus 4 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 83 (332)
T 3qd2_B 4 YLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQE 83 (332)
T ss_dssp HHHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHH
T ss_pred hhhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhh
Confidence 3567999999999999999999976 89999999997543 335678999999999999999999999986543
Q ss_pred ---------------------------------------------------ceEEEEeccCCCChHHHhhcCC--CCCCH
Q 001988 796 ---------------------------------------------------FKALVLEYMSNGSLEDCLHSSN--CALNI 822 (985)
Q Consensus 796 ---------------------------------------------------~~~lv~e~~~~gsL~~~l~~~~--~~~~~ 822 (985)
..++||||+++|+|.+++.... ...++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~ 163 (332)
T 3qd2_B 84 EMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREH 163 (332)
T ss_dssp HHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCH
T ss_pred hhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhh
Confidence 3789999999999999998753 23566
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCCc----------ceeccccccc
Q 001988 823 FCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDES----------TMRTQTLATI 892 (985)
Q Consensus 823 ~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~~----------~~~~~~~gt~ 892 (985)
..++.++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++........ .......||+
T Consensus 164 ~~~~~i~~qi~~aL~~L---H~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 240 (332)
T 3qd2_B 164 GVCLHIFIQIAEAVEFL---HSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTK 240 (332)
T ss_dssp HHHHHHHHHHHHHHHHH---HHTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CG
T ss_pred HHHHHHHHHHHHHHHHH---HhCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCc
Confidence 77899999999999999 7899999999999999999999999999999987543221 1223456999
Q ss_pred ccccccccccCccchhhhcccccccchhhhcccccccCcch----------hhhhHHHHHHHHHHHHHHccCCCCCCCCC
Q 001988 893 GYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEK----------HFAAKEQCLLSIFSLALECTMESPEKRID 962 (985)
Q Consensus 893 ~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~----------~~~~~~~~~~~l~~l~~~cl~~~P~~RPt 962 (985)
.|+|||.+.+..++.++|+ |++|+++++++++........ .........+++.+++.+||..||++||+
T Consensus 241 ~y~aPE~~~~~~~~~~~Di-~slG~il~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps 319 (332)
T 3qd2_B 241 LYMSPEQIHGNNYSHKVDI-FSLGLILFELLYSFSTQMERVRIITDVRNLKFPLLFTQKYPQEHMMVQDMLSPSPTERPE 319 (332)
T ss_dssp GGSCHHHHHCCCCCTHHHH-HHHHHHHHHHHSCCCCHHHHHHHHHHHHTTCCCHHHHHHCHHHHHHHHHHHCSSGGGSCC
T ss_pred CccChHHhcCCCCcchhhH-HHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcccccCChhHHHHHHHHccCCCCcCCC
Confidence 9999999999999999999 999999999998654321110 11122345567899999999999999999
Q ss_pred HHHHHH
Q 001988 963 AKDTIT 968 (985)
Q Consensus 963 ~~ev~~ 968 (985)
+.|+++
T Consensus 320 ~~~~l~ 325 (332)
T 3qd2_B 320 ATDIIE 325 (332)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 999986
No 104
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=3.8e-36 Score=333.97 Aligned_cols=250 Identities=24% Similarity=0.397 Sum_probs=193.5
Q ss_pred HhcCccCCceeeccCceeEEEEEEcC-C---cEEEEEEeccC--CcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCce
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLED-G---VEIAIKVFHPQ--CASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFK 797 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~~-~---~~vAvK~~~~~--~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~ 797 (985)
..++|...+.||+|+||.||+|+... + ..||||+++.. .....+.+.+|++++++++||||+++++++...+..
T Consensus 21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 100 (323)
T 3qup_A 21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAK 100 (323)
T ss_dssp C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC---
T ss_pred ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccc
Confidence 45689999999999999999998653 3 27999999765 334567899999999999999999999999877655
Q ss_pred ------EEEEeccCCCChHHHhhcC-----CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEE
Q 001988 798 ------ALVLEYMSNGSLEDCLHSS-----NCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAH 866 (985)
Q Consensus 798 ------~lv~e~~~~gsL~~~l~~~-----~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~k 866 (985)
++||||+++|+|.+++... ...+++..+..++.|++.||+|| |++||+||||||+||++++++.+|
T Consensus 101 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~L---H~~~ivH~Dikp~NIli~~~~~~k 177 (323)
T 3qup_A 101 GRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYL---SSRNFIHRDLAARNCMLAEDMTVC 177 (323)
T ss_dssp ----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCSGGGEEECTTSCEE
T ss_pred cCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHH---HcCCcccCCCCcceEEEcCCCCEE
Confidence 8999999999999998653 22589999999999999999999 788999999999999999999999
Q ss_pred EecccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhh----------
Q 001988 867 LSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHF---------- 935 (985)
Q Consensus 867 l~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~---------- 935 (985)
|+|||+++...............+++.|+|||.+.+..++.++|+ |++|++++++++ +..+.......
T Consensus 178 l~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~ 256 (323)
T 3qup_A 178 VADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDV-WAFGVTMWEIMTRGQTPYAGIENAEIYNYLIGGN 256 (323)
T ss_dssp ECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHH-HHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTC
T ss_pred EeeccccccccccccccccccccCcccccCchhhcCCCCCCccch-hhHHHHHHHHHhCCCCCccccChHHHHHHHhcCC
Confidence 999999987654433333344457889999999999999999999 999999999998 66655432211
Q ss_pred --hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhh
Q 001988 936 --AAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTL 977 (985)
Q Consensus 936 --~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~ 977 (985)
..+..+++++.+++.+||..||.+||++.++++.++++.+..
T Consensus 257 ~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~ 300 (323)
T 3qup_A 257 RLKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHL 300 (323)
T ss_dssp CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred CCCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence 122345678999999999999999999999999999988643
No 105
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-36 Score=332.57 Aligned_cols=235 Identities=21% Similarity=0.225 Sum_probs=194.2
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcc--hHHHHHHHHHHHHhc-CCCCeeeEEeeeecCCceEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCAS--TLKSFEAECEVIKNI-RHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~--~~~~~~~E~~il~~l-~h~niv~l~~~~~~~~~~~lv 800 (985)
.++|+..++||+|+||+||+|+.. +++.||||++...... .......|+..+.++ +||||++++++|.+++..++|
T Consensus 56 ~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv 135 (311)
T 3p1a_A 56 QQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQ 135 (311)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEE
Confidence 367999999999999999999976 7999999998765332 334455666666665 899999999999999999999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCC
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGED 880 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~ 880 (985)
|||+ +++|.+++...+..+++..+..++.|++.||+|| |+.+|+||||||+||+++.++.+||+|||+++......
T Consensus 136 ~e~~-~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~L---H~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~ 211 (311)
T 3p1a_A 136 TELC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHL---HSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAG 211 (311)
T ss_dssp EECC-CCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCSGGGEEECGGGCEEECCCTTCEECC---
T ss_pred Eecc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH---HHCCEecCCCCHHHEEECCCCCEEEccceeeeecccCC
Confidence 9999 7799999988777799999999999999999999 68899999999999999999999999999998764322
Q ss_pred CcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh----------hhHHHHHHHHHHHHH
Q 001988 881 ESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF----------AAKEQCLLSIFSLAL 950 (985)
Q Consensus 881 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~----------~~~~~~~~~l~~l~~ 950 (985)
......||+.|+|||.+.+ .++.++|+ |++|+++++++++..+....... ..+..+++++.+++.
T Consensus 212 ---~~~~~~gt~~y~aPE~~~~-~~~~~~Di-wslG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~ 286 (311)
T 3p1a_A 212 ---AGEVQEGDPRYMAPELLQG-SYGTAADV-FSLGLTILEVACNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLV 286 (311)
T ss_dssp ------CCCCCGGGCCGGGGGT-CCSTHHHH-HHHHHHHHHHHHTCCCCSSHHHHHHHTTTCCCHHHHTTSCHHHHHHHH
T ss_pred ---CCcccCCCccccCHhHhcC-CCCchhhH-HHHHHHHHHHHhCCCCCCCccHHHHHhccCCCcccccCCCHHHHHHHH
Confidence 2334569999999998765 78999999 99999999999985433221111 112335678999999
Q ss_pred HccCCCCCCCCCHHHHHH
Q 001988 951 ECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 951 ~cl~~~P~~RPt~~ev~~ 968 (985)
+|+..||++||++.|+++
T Consensus 287 ~~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 287 MMLEPDPKLRATAEALLA 304 (311)
T ss_dssp HHSCSSTTTSCCHHHHHT
T ss_pred HHcCCChhhCcCHHHHHh
Confidence 999999999999999985
No 106
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=330.35 Aligned_cols=236 Identities=22% Similarity=0.296 Sum_probs=203.2
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcc------hHHHHHHHHHHHHhcCCCCeeeEEeeeecCCce
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCAS------TLKSFEAECEVIKNIRHRNLVKIISSCSNDDFK 797 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~------~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~ 797 (985)
.++|...+.||+|+||.||+|... +++.||+|++...... ..+.+.+|++++++++||||+++++++.+.+..
T Consensus 10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 89 (326)
T 2y0a_A 10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV 89 (326)
T ss_dssp HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence 457899999999999999999975 7899999999765322 356789999999999999999999999999999
Q ss_pred EEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCC----cEEEecccCc
Q 001988 798 ALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDM----VAHLSDFGMA 873 (985)
Q Consensus 798 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~----~~kl~DfGla 873 (985)
++||||+++|+|.+++.... .+++..+..++.|++.||+|| |++||+||||||+||+++.++ .+||+|||++
T Consensus 90 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~al~~l---H~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a 165 (326)
T 2y0a_A 90 ILILELVAGGELFDFLAEKE-SLTEEEATEFLKQILNGVYYL---HSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLA 165 (326)
T ss_dssp EEEEECCCSCBHHHHHTTSS-CCBHHHHHHHHHHHHHHHHHH---HHTTEECCCCCGGGEEESCSSSSSCCEEECCCTTC
T ss_pred EEEEEcCCCCCHHHHHHhcC-CcCHHHHHHHHHHHHHHHHHH---HHCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCC
Confidence 99999999999999997653 689999999999999999999 789999999999999999887 8999999999
Q ss_pred eeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh---------------hH
Q 001988 874 KLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA---------------AK 938 (985)
Q Consensus 874 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~---------------~~ 938 (985)
+.+.... ......||+.|+|||.+....++.++|+ |++|+++++++++..+........ ..
T Consensus 166 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Di-wslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 241 (326)
T 2y0a_A 166 HKIDFGN---EFKNIFGTPEFVAPEIVNYEPLGLEADM-WSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYF 241 (326)
T ss_dssp EECCTTS---CCCCCCSCTTTCCHHHHTTCCCCTHHHH-HHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHTCCCCCHHHH
T ss_pred eECCCCC---ccccccCCcCcCCceeecCCCCCcHHHH-HHHHHHHHHHHHCcCCCCCCCHHHHHHHHHhcCCCcCcccc
Confidence 8874322 2234569999999999998999999999 999999999999887654332111 11
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 939 EQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 939 ~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
..++..+.+++.+||..||.+||++.|+++
T Consensus 242 ~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 271 (326)
T 2y0a_A 242 SNTSALAKDFIRRLLVKDPKKRMTIQDSLQ 271 (326)
T ss_dssp TTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred ccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 234677899999999999999999999986
No 107
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=9.3e-36 Score=343.15 Aligned_cols=238 Identities=21% Similarity=0.256 Sum_probs=202.9
Q ss_pred HhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc--chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEE
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA--STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv 800 (985)
..++|+..+.||+|+||.||+|... +|+.||+|++..... ...+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv 88 (444)
T 3soa_A 9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLI 88 (444)
T ss_dssp HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEE
T ss_pred ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEE
Confidence 4578999999999999999999864 789999999976543 2346789999999999999999999999999999999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEc---CCCcEEEecccCceecc
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLD---EDMVAHLSDFGMAKLLS 877 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~---~~~~~kl~DfGla~~~~ 877 (985)
|||++||+|.+.+...+ .+++.....++.||+.||+|| |++||+||||||+||+++ +++.+||+|||+++...
T Consensus 89 ~E~~~gg~L~~~i~~~~-~~~e~~~~~i~~qil~aL~~l---H~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~ 164 (444)
T 3soa_A 89 FDLVTGGELFEDIVARE-YYSEADASHCIQQILEAVLHC---HQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVE 164 (444)
T ss_dssp ECCCBCCBHHHHHHHCS-CCCHHHHHHHHHHHHHHHHHH---HHTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCC
T ss_pred EEeCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH---HHCCccccCCCHHHEEEeccCCCCcEEEccCceeEEec
Confidence 99999999999998764 689999999999999999999 789999999999999998 46789999999998765
Q ss_pred CCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh---------------hHHHHH
Q 001988 878 GEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA---------------AKEQCL 942 (985)
Q Consensus 878 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~---------------~~~~~~ 942 (985)
... ......+||+.|+|||.+.+..++.++|+ |++|++++++++|..++....... ....++
T Consensus 165 ~~~--~~~~~~~gt~~Y~APE~l~~~~~~~~~DI-wSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s 241 (444)
T 3soa_A 165 GEQ--QAWFGFAGTPGYLSPEVLRKDPYGKPVDL-WACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVT 241 (444)
T ss_dssp TTC--CBCCCSCSCGGGCCHHHHTTCCBCTHHHH-HHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCTTTTTTSC
T ss_pred CCC--ceeecccCCcccCCHHHhcCCCCCCcccc-HHHHHHHHHHHhCCCCCCCccHHHHHHHHHhCCCCCCccccccCC
Confidence 332 22344679999999999999999999999 999999999999987654332111 112356
Q ss_pred HHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 943 LSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 943 ~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
+++.+++.+|+..||.+||++.|+++
T Consensus 242 ~~~~~li~~~L~~dP~~Rpta~e~L~ 267 (444)
T 3soa_A 242 PEAKDLINKMLTINPSKRITAAEALK 267 (444)
T ss_dssp HHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 78999999999999999999999986
No 108
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=2.2e-36 Score=346.96 Aligned_cols=246 Identities=19% Similarity=0.220 Sum_probs=207.2
Q ss_pred HHHHHHHhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC---cchHHHHHHHHHHHHhcCCCCeeeEEeeeec
Q 001988 718 YFELLRATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC---ASTLKSFEAECEVIKNIRHRNLVKIISSCSN 793 (985)
Q Consensus 718 ~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~---~~~~~~~~~E~~il~~l~h~niv~l~~~~~~ 793 (985)
+.++....++|+..++||+|+||+||+|+.+ +++.||+|++++.. ......+.+|+.++++++||||+++++++.+
T Consensus 66 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~ 145 (437)
T 4aw2_A 66 VKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQD 145 (437)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred hhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee
Confidence 4455556789999999999999999999976 57889999997531 1123348899999999999999999999999
Q ss_pred CCceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCc
Q 001988 794 DDFKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMA 873 (985)
Q Consensus 794 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla 873 (985)
.+..++||||++||+|.+++......+++..+..++.|++.||+|| |++|||||||||+|||++.++.+||+|||+|
T Consensus 146 ~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~L---H~~giiHrDLKp~NILl~~~g~vkL~DFGla 222 (437)
T 4aw2_A 146 DNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSV---HQLHYVHRDIKPDNILMDMNGHIRLADFGSC 222 (437)
T ss_dssp SSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred CCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHH---HhCCeEecccCHHHeeEcCCCCEEEcchhhh
Confidence 9999999999999999999987666799999999999999999999 7899999999999999999999999999999
Q ss_pred eeccCCCCcceecccccccccccccccc-----cCccchhhhcccccccchhhhcccccccCcchhhhh-----------
Q 001988 874 KLLSGEDESTMRTQTLATIGYMAPDEIF-----VGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA----------- 937 (985)
Q Consensus 874 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~----------- 937 (985)
+...... .......+||+.|+|||++. .+.++.++|+ |++|++++|+++|..++........
T Consensus 223 ~~~~~~~-~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~Dv-wSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~ 300 (437)
T 4aw2_A 223 LKLMEDG-TVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDW-WSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERF 300 (437)
T ss_dssp EECCTTS-CEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHH-HHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHC
T ss_pred hhcccCC-CcccccccCCcCeeChHHHhhcccCCCCCCCcCee-HHHHHHHHHHHhCCCCCCCCChhHHHHhhhhccccc
Confidence 8765332 22334467999999999987 5678999999 9999999999999877654321111
Q ss_pred --H---HHHHHHHHHHHHHccCCCCCC--CCCHHHHHH
Q 001988 938 --K---EQCLLSIFSLALECTMESPEK--RIDAKDTIT 968 (985)
Q Consensus 938 --~---~~~~~~l~~l~~~cl~~~P~~--RPt~~ev~~ 968 (985)
+ ..+++++.+++++|+..+|++ ||++.|+++
T Consensus 301 ~~p~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~ 338 (437)
T 4aw2_A 301 QFPTQVTDVSENAKDLIRRLICSREHRLGQNGIEDFKK 338 (437)
T ss_dssp CCCSSCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred cCCcccccCCHHHHHHHHHHhcccccccCCCCHHHHhC
Confidence 0 124678999999999888888 999999876
No 109
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=8.5e-36 Score=337.68 Aligned_cols=237 Identities=19% Similarity=0.270 Sum_probs=206.2
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEec
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLEY 803 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e~ 803 (985)
.++|...+.||+|+||.||+|... +++.||+|++..........+.+|++++++++||||+++++++.+.+..++||||
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~ 129 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF 129 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEc
Confidence 467999999999999999999875 7899999999876555667889999999999999999999999999999999999
Q ss_pred cCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcC--CCcEEEecccCceeccCCCC
Q 001988 804 MSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDE--DMVAHLSDFGMAKLLSGEDE 881 (985)
Q Consensus 804 ~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~--~~~~kl~DfGla~~~~~~~~ 881 (985)
+++|+|.+++......+++..+..++.|++.||+|| |++||+||||||+||+++. ++.+||+|||+++.+.....
T Consensus 130 ~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~L---H~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~ 206 (387)
T 1kob_A 130 LSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHM---HEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEI 206 (387)
T ss_dssp CCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHH---HHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSC
T ss_pred CCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH---HhCCeeecccchHHeEEecCCCCceEEEecccceecCCCcc
Confidence 999999999987766789999999999999999999 7899999999999999974 57899999999998753322
Q ss_pred cceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhhh---------------HHHHHHHHH
Q 001988 882 STMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA---------------KEQCLLSIF 946 (985)
Q Consensus 882 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~---------------~~~~~~~l~ 946 (985)
.....||+.|+|||.+.+..++.++|+ |++|+++++++++..+......... ...+++++.
T Consensus 207 ---~~~~~gt~~y~aPE~~~~~~~~~~~Di-wSlG~il~elltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~ 282 (387)
T 1kob_A 207 ---VKVTTATAEFAAPEIVDREPVGFYTDM-WAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAK 282 (387)
T ss_dssp ---EEEECSSGGGCCHHHHTTCCBCHHHHH-HHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHH
T ss_pred ---eeeeccCCCccCchhccCCCCCCcccE-eeHhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCccccccCCHHHH
Confidence 233469999999999999999999999 9999999999999876654321111 123567899
Q ss_pred HHHHHccCCCCCCCCCHHHHHH
Q 001988 947 SLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 947 ~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
+++.+||..||.+||++.|+++
T Consensus 283 ~li~~~L~~dP~~Rpt~~ell~ 304 (387)
T 1kob_A 283 DFIKNLLQKEPRKRLTVHDALE 304 (387)
T ss_dssp HHHHTTSCSSGGGSCCHHHHHT
T ss_pred HHHHHHcCCChhHCcCHHHHhh
Confidence 9999999999999999999986
No 110
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=4.7e-36 Score=327.40 Aligned_cols=236 Identities=22% Similarity=0.315 Sum_probs=196.9
Q ss_pred cCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcc--hHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEec
Q 001988 726 DNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCAS--TLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLEY 803 (985)
Q Consensus 726 ~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~--~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e~ 803 (985)
++|...+.||+|+||.||+|+..+++.||+|++...... ....+.+|++++++++||||+++++++.+.+..++||||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence 578899999999999999999988999999999765322 246788999999999999999999999999999999999
Q ss_pred cCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCCcc
Q 001988 804 MSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDEST 883 (985)
Q Consensus 804 ~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~ 883 (985)
+++ +|.+++......+++..+..++.|+++||+|| |++||+||||||+||+++.++.+||+|||+++...... .
T Consensus 82 ~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l---H~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~--~ 155 (288)
T 1ob3_A 82 LDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYC---HDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPV--R 155 (288)
T ss_dssp CSE-EHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-----
T ss_pred cCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH---HHCCeecCCCCHHHEEEcCCCCEEEeECccccccCccc--c
Confidence 975 99999987766789999999999999999999 78899999999999999999999999999998764222 1
Q ss_pred eeccccccccccccccccc-CccchhhhcccccccchhhhcccccccCcchhhhh-------------------------
Q 001988 884 MRTQTLATIGYMAPDEIFV-GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA------------------------- 937 (985)
Q Consensus 884 ~~~~~~gt~~y~aPE~~~~-~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~------------------------- 937 (985)
......||+.|+|||.+.+ ..++.++|+ |++|+++++++++..+.........
T Consensus 156 ~~~~~~~t~~y~aPE~~~~~~~~~~~~Di-wslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (288)
T 1ob3_A 156 KYTHEIVTLWYRAPDVLMGSKKYSTTIDI-WSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKY 234 (288)
T ss_dssp ------CCCTTCCHHHHTTCCSCCTHHHH-HHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTC
T ss_pred ccccccccccccCchheeCCCCCCcHHHH-HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhccccc
Confidence 2234468999999999876 458999999 9999999999998866543211110
Q ss_pred ---------------HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 938 ---------------KEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 938 ---------------~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
....++++.+++.+|+..||++||++.|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 280 (288)
T 1ob3_A 235 DPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE 280 (288)
T ss_dssp CTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 0124567889999999999999999999875
No 111
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=3e-36 Score=337.43 Aligned_cols=233 Identities=24% Similarity=0.244 Sum_probs=194.9
Q ss_pred HhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC---cchHHHHHHHHHHHHhc-CCCCeeeEEeeeecCCceE
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC---ASTLKSFEAECEVIKNI-RHRNLVKIISSCSNDDFKA 798 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~---~~~~~~~~~E~~il~~l-~h~niv~l~~~~~~~~~~~ 798 (985)
..++|+..+.||+|+||.||+|+.+ +++.||||++++.. ......+.+|.++++++ +||||+++++++.+.+..|
T Consensus 21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~ 100 (353)
T 3txo_A 21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF 100 (353)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence 3478999999999999999999975 68999999997542 22345678999999988 7999999999999999999
Q ss_pred EEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccC
Q 001988 799 LVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSG 878 (985)
Q Consensus 799 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~ 878 (985)
+||||++||+|.+++...+ .+++..+..++.||+.||+|| |++||+||||||+|||++.++.+||+|||+|+....
T Consensus 101 lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~L---H~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~ 176 (353)
T 3txo_A 101 FVMEFVNGGDLMFHIQKSR-RFDEARARFYAAEIISALMFL---HDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIC 176 (353)
T ss_dssp EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHH---HHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC
T ss_pred EEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH---HHCCCcccCCCHHHEEECCCCCEEEccccceeeccc
Confidence 9999999999999998754 689999999999999999999 788999999999999999999999999999986432
Q ss_pred CCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhhh-----------HHHHHHHHHH
Q 001988 879 EDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA-----------KEQCLLSIFS 947 (985)
Q Consensus 879 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~l~~ 947 (985)
. .......+||+.|+|||.+.+..++.++|+ |++|++++++++|..++........ +...++++.+
T Consensus 177 ~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di-wslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~ 253 (353)
T 3txo_A 177 N--GVTTATFCGTPDYIAPEILQEMLYGPAVDW-WAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPTWLHEDATG 253 (353)
T ss_dssp -----------CCGGGCCHHHHHHHHCTTHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHH
T ss_pred C--CccccccCCCcCeEChhhcCCCCcCCccCC-CcchHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHH
Confidence 2 223445679999999999999999999999 9999999999999877654322211 1224577899
Q ss_pred HHHHccCCCCCCCCCH
Q 001988 948 LALECTMESPEKRIDA 963 (985)
Q Consensus 948 l~~~cl~~~P~~RPt~ 963 (985)
++.+|+..||.+||++
T Consensus 254 li~~lL~~dP~~R~~~ 269 (353)
T 3txo_A 254 ILKSFMTKNPTMRLGS 269 (353)
T ss_dssp HHHHHTCSSGGGSTTS
T ss_pred HHHHHhhhCHHHccCC
Confidence 9999999999999998
No 112
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=1.7e-36 Score=336.88 Aligned_cols=248 Identities=22% Similarity=0.362 Sum_probs=204.7
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcE----EEEEEeccCC-cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVE----IAIKVFHPQC-ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKA 798 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~----vAvK~~~~~~-~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~ 798 (985)
.++|+..+.||+|+||.||+|++. +++. ||+|.+.... ......+.+|+.++++++||||+++++++.+ +..+
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~ 90 (325)
T 3kex_A 12 ETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPG-SSLQ 90 (325)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECB-SSEE
T ss_pred HhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcC-CccE
Confidence 357888999999999999999864 4443 8888876442 2234567889999999999999999999864 5688
Q ss_pred EEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccC
Q 001988 799 LVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSG 878 (985)
Q Consensus 799 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~ 878 (985)
+||||+++|+|.+++......+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++.+..
T Consensus 91 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~l---H~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~ 167 (325)
T 3kex_A 91 LVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYL---EEHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPP 167 (325)
T ss_dssp EEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHH---HHTTCCCSCCSSTTEEESSSSCEEECSCSGGGGSCC
T ss_pred EEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHH---HhCCCCCCccchheEEECCCCeEEECCCCcccccCc
Confidence 99999999999999987766789999999999999999999 788999999999999999999999999999998765
Q ss_pred CCCcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhhh------------hHHHHHHHH
Q 001988 879 EDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHFA------------AKEQCLLSI 945 (985)
Q Consensus 879 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~~------------~~~~~~~~l 945 (985)
...........+|+.|+|||.+.++.++.++|+ |++|++++++++ +..++....... .+..++.++
T Consensus 168 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (325)
T 3kex_A 168 DDKQLLYSEAKTPIKWMALESIHFGKYTHQSDV-WSYGVTVWELMTFGAEPYAGLRLAEVPDLLEKGERLAQPQICTIDV 246 (325)
T ss_dssp CTTCCC-----CCTTTSCHHHHHHCCCCHHHHH-HHHHHHHHHHHTTSCCTTTTSCTTHHHHHHHTTCBCCCCTTBCTTT
T ss_pred ccccccccCCCCcccccChHHhccCCCChhhHh-HHhHHHHHHHHhCCCCCccccCHHHHHHHHHcCCCCCCCCcCcHHH
Confidence 444444455668889999999999999999999 999999999998 776654332111 122345678
Q ss_pred HHHHHHccCCCCCCCCCHHHHHHHHHHhHhhh
Q 001988 946 FSLALECTMESPEKRIDAKDTITRLLKIRDTL 977 (985)
Q Consensus 946 ~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~ 977 (985)
.+++.+||..||.+||++.|+++.|+++.+..
T Consensus 247 ~~li~~~l~~dp~~Rps~~el~~~l~~~~~~~ 278 (325)
T 3kex_A 247 YMVMVKCWMIDENIRPTFKELANEFTRMARDP 278 (325)
T ss_dssp THHHHHHTCSCTTTSCCHHHHHHHHHHHTTSH
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHHHHhcc
Confidence 89999999999999999999999999987643
No 113
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=3.7e-36 Score=334.65 Aligned_cols=249 Identities=24% Similarity=0.310 Sum_probs=209.0
Q ss_pred hcCccCCceeeccCceeEEEEEE-----cCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeee--cCCce
Q 001988 725 TDNFAENNIIGIGGFGSVYRARL-----EDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCS--NDDFK 797 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~-----~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~--~~~~~ 797 (985)
.++|+..+.||+|+||.||+|++ .+++.||||++........+.+.+|++++++++||||+++++++. +....
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 101 (327)
T 3lxl_A 22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSL 101 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEE
T ss_pred hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceE
Confidence 36788899999999999999984 368899999998776666678999999999999999999999886 45668
Q ss_pred EEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceecc
Q 001988 798 ALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLS 877 (985)
Q Consensus 798 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~ 877 (985)
++||||+++++|.+++......+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++...
T Consensus 102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~l---H~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~ 178 (327)
T 3lxl_A 102 RLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYL---GSRRCVHRDLAARNILVESEAHVKIADFGLAKLLP 178 (327)
T ss_dssp EEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEEEETTEEEECCGGGCEECC
T ss_pred EEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH---HhCCccCCCCChhhEEECCCCCEEEcccccceecc
Confidence 899999999999999987655789999999999999999999 78999999999999999999999999999999875
Q ss_pred CCCCcc-eecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh---------------------
Q 001988 878 GEDEST-MRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF--------------------- 935 (985)
Q Consensus 878 ~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~--------------------- 935 (985)
...... ......+|+.|+|||.+.+..++.++|+ |++|+++++++++..++......
T Consensus 179 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (327)
T 3lxl_A 179 LDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDV-WSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELL 257 (327)
T ss_dssp TTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHH-HHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHH
T ss_pred cCCccceeeccCCccccccCHHHhccCCCChHHhH-HHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHh
Confidence 433322 2233458889999999999999999999 99999999999986654322110
Q ss_pred ------hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhh
Q 001988 936 ------AAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTL 977 (985)
Q Consensus 936 ------~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~ 977 (985)
..+..+++++.+++.+||..||.+||++.|+++.|+++....
T Consensus 258 ~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~ 305 (327)
T 3lxl_A 258 EEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGS 305 (327)
T ss_dssp HTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC----
T ss_pred hcccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhh
Confidence 011234578999999999999999999999999999886543
No 114
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=4.2e-36 Score=327.96 Aligned_cols=245 Identities=24% Similarity=0.389 Sum_probs=194.6
Q ss_pred HhcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCc--chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEE
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCA--STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVL 801 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~ 801 (985)
..++|...+.||+|+||.||+|+.. ..||+|+++.... ...+.+.+|++++++++||||+++++++. ....++||
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~ 98 (289)
T 3og7_A 22 PDGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST-APQLAIVT 98 (289)
T ss_dssp CTTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEE
T ss_pred CccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeecc-CCccEEEE
Confidence 3567999999999999999999875 3599999976533 23567899999999999999999999764 45678999
Q ss_pred eccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCC
Q 001988 802 EYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDE 881 (985)
Q Consensus 802 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 881 (985)
||+++++|.+++......+++..+..++.|++.||+|| |+.||+||||||+||+++.++.+||+|||+++.......
T Consensus 99 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~l---H~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 175 (289)
T 3og7_A 99 QWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYL---HAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSG 175 (289)
T ss_dssp ECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCCGGGEEEETTTEEEECCCC----------
T ss_pred EecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH---HhCCcccccCccceEEECCCCCEEEccceeccccccccc
Confidence 99999999999987777899999999999999999999 789999999999999999999999999999987653333
Q ss_pred cceecccccccccccccccc---cCccchhhhcccccccchhhhcccccccCcchhhh-----------------hHHHH
Q 001988 882 STMRTQTLATIGYMAPDEIF---VGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA-----------------AKEQC 941 (985)
Q Consensus 882 ~~~~~~~~gt~~y~aPE~~~---~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~-----------------~~~~~ 941 (985)
........||+.|+|||.+. ...++.++|+ |++|+++++++++..++....... ....+
T Consensus 176 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di-~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (289)
T 3og7_A 176 SHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDV-YAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLSPDLSKVRSNC 254 (289)
T ss_dssp --------CCCTTCCHHHHC----CCSCHHHHH-HHHHHHHHHHHHSSCTTSSCCCHHHHHHHHHHTSCCCCTTSSCTTS
T ss_pred cccccccCCCccccCchhhcccCCCCCCcccch-HHHHHHHHHHHHCCCCccccchHHHHHHHhcccccCcchhhccccC
Confidence 33334557999999999886 6678889999 999999999999887665422111 11245
Q ss_pred HHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHh
Q 001988 942 LLSIFSLALECTMESPEKRIDAKDTITRLLKIRD 975 (985)
Q Consensus 942 ~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~ 975 (985)
++++.+++.+||..+|.+||++.|+++.|+++.+
T Consensus 255 ~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~ 288 (289)
T 3og7_A 255 PKRMKRLMAECLKKKRDERPSFPRILAEIEELAR 288 (289)
T ss_dssp CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence 6789999999999999999999999999998865
No 115
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=6.1e-36 Score=335.82 Aligned_cols=238 Identities=23% Similarity=0.263 Sum_probs=201.5
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC-----cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC-----ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKA 798 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~-----~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~ 798 (985)
.++|+..+.||+|+||.||+|... +++.||||++.... ....+.+.+|++++++++||||+++++++.+.+..+
T Consensus 23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~ 102 (351)
T 3c0i_A 23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY 102 (351)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 467999999999999999999875 78999999986431 123577899999999999999999999999999999
Q ss_pred EEEeccCCCChHHHhhcC---CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCc---EEEecccC
Q 001988 799 LVLEYMSNGSLEDCLHSS---NCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMV---AHLSDFGM 872 (985)
Q Consensus 799 lv~e~~~~gsL~~~l~~~---~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~---~kl~DfGl 872 (985)
+||||+++|+|.+++... +..+++..+..++.||+.||+|| |++||+||||||+||+++.++. +||+|||+
T Consensus 103 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~l---H~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~ 179 (351)
T 3c0i_A 103 MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYC---HDNNIIHRDVKPHCVLLASKENSAPVKLGGFGV 179 (351)
T ss_dssp EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEECSSSTTCCEEECCCTT
T ss_pred EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHH---HHCCceeccCChHHeEEecCCCCCcEEEecCcc
Confidence 999999999999887643 34589999999999999999999 7899999999999999987654 99999999
Q ss_pred ceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh--------------hhH
Q 001988 873 AKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF--------------AAK 938 (985)
Q Consensus 873 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~--------------~~~ 938 (985)
++.+.... ......+||+.|+|||.+.+..++.++|+ |++|+++++++++..+....... ...
T Consensus 180 a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Di-wslG~il~~ll~g~~pf~~~~~~~~~~i~~~~~~~~~~~~ 256 (351)
T 3c0i_A 180 AIQLGESG--LVAGGRVGTPHFMAPEVVKREPYGKPVDV-WGCGVILFILLSGCLPFYGTKERLFEGIIKGKYKMNPRQW 256 (351)
T ss_dssp CEECCTTS--CBCCCCCSCGGGCCHHHHTTCCBCTHHHH-HHHHHHHHHHHHSSCSSCSSHHHHHHHHHHTCCCCCHHHH
T ss_pred eeEecCCC--eeecCCcCCcCccCHHHHcCCCCCchHhh-HHHHHHHHHHHHCCCCCCCcHHHHHHHHHcCCCCCCcccc
Confidence 98875322 22344579999999999999999999999 99999999999988765433211 111
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 939 EQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 939 ~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
..+++++.+++.+||..||++||++.|+++
T Consensus 257 ~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 257 SHISESAKDLVRRMLMLDPAERITVYEALN 286 (351)
T ss_dssp TTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 234678999999999999999999999985
No 116
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=3.2e-36 Score=349.69 Aligned_cols=250 Identities=25% Similarity=0.398 Sum_probs=206.5
Q ss_pred HHhcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEe
Q 001988 723 RATDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLE 802 (985)
Q Consensus 723 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e 802 (985)
...++|...+.||+|+||.||+|.++++..||||+++... ...+.+.+|++++++++||||+++++++.+ +..++|||
T Consensus 181 i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e 258 (452)
T 1fmk_A 181 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTE 258 (452)
T ss_dssp CCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEC
T ss_pred cChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEeh
Confidence 3557788999999999999999999888889999998654 335689999999999999999999999976 67899999
Q ss_pred ccCCCChHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCC
Q 001988 803 YMSNGSLEDCLHSS-NCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDE 881 (985)
Q Consensus 803 ~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 881 (985)
|+++|+|.+++... +..+++..+..++.|++.||+|| |+++|+||||||+||++++++.+||+|||+++......
T Consensus 259 ~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~L---H~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~- 334 (452)
T 1fmk_A 259 YMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYV---ERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE- 334 (452)
T ss_dssp CCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCSGGGEEECGGGCEEECCCCTTC-------
T ss_pred hhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH---HhCCeeCCCCChhhEEECCCCCEEECCCccceecCCCc-
Confidence 99999999999754 34689999999999999999999 78999999999999999999999999999998764322
Q ss_pred cceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchh------------hhhHHHHHHHHHHH
Q 001988 882 STMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKH------------FAAKEQCLLSIFSL 948 (985)
Q Consensus 882 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~------------~~~~~~~~~~l~~l 948 (985)
........+++.|+|||.+..+.++.++|+ |++|++++++++ +..+...... .+.+..+++++.++
T Consensus 335 ~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv-wslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~l 413 (452)
T 1fmk_A 335 YTARQGAKFPIKWTAPEAALYGRFTIKSDV-WSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDL 413 (452)
T ss_dssp --------CCGGGSCHHHHHHCCCCHHHHH-HHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHH
T ss_pred eecccCCcccccccCHhHHhcCCCCccccH-HhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHH
Confidence 222233457889999999999999999999 999999999998 6665543211 11234567889999
Q ss_pred HHHccCCCCCCCCCHHHHHHHHHHhHhhhcc
Q 001988 949 ALECTMESPEKRIDAKDTITRLLKIRDTLSK 979 (985)
Q Consensus 949 ~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~~ 979 (985)
+.+||..+|++||++.++++.|+.+......
T Consensus 414 i~~cl~~dP~~Rpt~~~l~~~L~~~~~~~~~ 444 (452)
T 1fmk_A 414 MCQCWRKEPEERPTFEYLQAFLEDYFTSTEP 444 (452)
T ss_dssp HHHHTCSSGGGSCCHHHHHHHHHTTTSCSCC
T ss_pred HHHHccCChhhCcCHHHHHHHHHHHhccCCc
Confidence 9999999999999999999999988764433
No 117
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=5.9e-36 Score=351.20 Aligned_cols=245 Identities=23% Similarity=0.393 Sum_probs=209.7
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEec
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLEY 803 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e~ 803 (985)
.++|...+.||+|+||.||+|.+. +++.||||+++... ...+.+.+|++++++++||||++++++|.+.+..++||||
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~ 297 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF 297 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEEC
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc-cchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEc
Confidence 467888899999999999999976 48899999997653 3467899999999999999999999999999999999999
Q ss_pred cCCCChHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCCc
Q 001988 804 MSNGSLEDCLHSS-NCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDES 882 (985)
Q Consensus 804 ~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~~ 882 (985)
+++|+|.+++... ...+++..+..++.||+.||+|| |+++|+||||||+|||++.++.+||+|||+++...... .
T Consensus 298 ~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~L---H~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~-~ 373 (495)
T 1opk_A 298 MTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYL---EKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDT-Y 373 (495)
T ss_dssp CTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCC-E
T ss_pred cCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHH---HhCCcccCCCChhhEEECCCCcEEEeecccceeccCCc-e
Confidence 9999999999864 34689999999999999999999 78999999999999999999999999999998864322 2
Q ss_pred ceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchh------------hhhHHHHHHHHHHHH
Q 001988 883 TMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKH------------FAAKEQCLLSIFSLA 949 (985)
Q Consensus 883 ~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~------------~~~~~~~~~~l~~l~ 949 (985)
.......+++.|+|||.+..+.++.++|+ |++|++++++++ +..+...... ...+..+++++.+++
T Consensus 374 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDv-wSlG~~l~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li 452 (495)
T 1opk_A 374 TAHAGAKFPIKWTAPESLAYNKFSIKSDV-WAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELM 452 (495)
T ss_dssp ECCTTCCCCGGGCCHHHHHHCEECHHHHH-HHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHH
T ss_pred eecCCCcCCcceeCHhHHhcCCCCcHHhH-HhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHH
Confidence 22334457789999999999999999999 999999999998 6554432211 112334678899999
Q ss_pred HHccCCCCCCCCCHHHHHHHHHHhHh
Q 001988 950 LECTMESPEKRIDAKDTITRLLKIRD 975 (985)
Q Consensus 950 ~~cl~~~P~~RPt~~ev~~~L~~i~~ 975 (985)
.+||..||.+||++.++++.|+.+.+
T Consensus 453 ~~cl~~dP~~RPs~~el~~~L~~~~~ 478 (495)
T 1opk_A 453 RACWQWNPSDRPSFAEIHQAFETMFQ 478 (495)
T ss_dssp HHHTCSSGGGSCCHHHHHHHHHTSCS
T ss_pred HHHcCcChhHCcCHHHHHHHHHHHHh
Confidence 99999999999999999999988754
No 118
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5.5e-36 Score=330.42 Aligned_cols=255 Identities=35% Similarity=0.568 Sum_probs=195.0
Q ss_pred cccceecccccccc--ccCCcCCCCCCccEEEccC-CCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeE
Q 001988 394 SLERLNIAFCNISG--NIPKAIGNLSNLIVLSLGG-NNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNEL 470 (985)
Q Consensus 394 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 470 (985)
+++.|++++|++++ .+|..|..+++|++|+|++ |++.+.+|..|+++++|++|+|++|++++.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 35555555555555 5566666666666666663 66666666666666666666666666666666666666677777
Q ss_pred EccCCccccccCCCCcCcCcCceEeeccceeeeecCCCccCcc-ceeEEeecCCcccCCccccccCCCcccEEEccCCcc
Q 001988 471 DLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFWNLK-DILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNL 549 (985)
Q Consensus 471 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 549 (985)
+|++|++++.+|..+..+++|++|++++|++++.+|..|..++ +|++|++++|++++..|..+..+. |+.|++++|++
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 7777776666666666677777777777777666666666666 677777777777766666777776 88888888888
Q ss_pred CccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCccccccccccccccccccccCCCCCCC
Q 001988 550 SGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKLSYLKELNLSFNKLKGEIPRGG 629 (985)
Q Consensus 550 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~ 629 (985)
++.+|..|..+++|++|+|++|++++.+|. +..+++|++|+|++|+|++.+|..|..+++|++|++++|+++|.+|..+
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 888888888888999999999999876665 7888999999999999998899999999999999999999999999888
Q ss_pred CCcccccccccCCccccCCCC
Q 001988 630 PFANFTAESFMGNELLCGLPN 650 (985)
Q Consensus 630 ~~~~~~~~~~~~n~~lc~~~~ 650 (985)
.+.++....+.+|+++||.|.
T Consensus 289 ~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp TGGGSCGGGTCSSSEEESTTS
T ss_pred cccccChHHhcCCCCccCCCC
Confidence 888888888999999999874
No 119
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=7.1e-36 Score=324.43 Aligned_cols=249 Identities=24% Similarity=0.394 Sum_probs=209.6
Q ss_pred HHhcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEe
Q 001988 723 RATDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLE 802 (985)
Q Consensus 723 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e 802 (985)
...++|+..+.||+|+||.||+|...+++.||+|+++... ...+.+.+|++++++++||||+++++++.. +..++|||
T Consensus 10 v~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e 87 (279)
T 1qpc_A 10 VPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITE 87 (279)
T ss_dssp CCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred cCHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEEcC-CCcEEEEe
Confidence 3457889999999999999999999888899999997653 345788999999999999999999999874 45789999
Q ss_pred ccCCCChHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCC
Q 001988 803 YMSNGSLEDCLHSSN-CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDE 881 (985)
Q Consensus 803 ~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 881 (985)
|+++++|.+++.... ..+++..+..++.|++.||+|| |++||+||||||+||++++++.+||+|||+++......
T Consensus 88 ~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~l---H~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~- 163 (279)
T 1qpc_A 88 YMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFI---EERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNE- 163 (279)
T ss_dssp CCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSC-
T ss_pred cCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH---HHCCeeccCCCHhhEEEcCCCCEEECCCcccccccCcc-
Confidence 999999999997642 2589999999999999999999 78999999999999999999999999999998875322
Q ss_pred cceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhhh------------hHHHHHHHHHHH
Q 001988 882 STMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHFA------------AKEQCLLSIFSL 948 (985)
Q Consensus 882 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~~------------~~~~~~~~l~~l 948 (985)
........+++.|+|||.+..+.++.++|+ |++|++++++++ +..+........ .+..+++++.++
T Consensus 164 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 242 (279)
T 1qpc_A 164 YTAREGAKFPIKWTAPEAINYGTFTIKSDV-WSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQL 242 (279)
T ss_dssp EECCTTCCCCTTTSCHHHHHHCEECHHHHH-HHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHH
T ss_pred cccccCCCCccCccChhhhccCCCCchhhh-HHHHHHHHHHHhCCCCCCcccCHHHHHHHHhcccCCCCcccccHHHHHH
Confidence 222234457889999999999999999999 999999999998 666544322111 122356789999
Q ss_pred HHHccCCCCCCCCCHHHHHHHHHHhHhhhc
Q 001988 949 ALECTMESPEKRIDAKDTITRLLKIRDTLS 978 (985)
Q Consensus 949 ~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~ 978 (985)
+.+|+..+|++||++.++++.|+++.....
T Consensus 243 i~~~l~~~p~~Rps~~~l~~~l~~~~~~~~ 272 (279)
T 1qpc_A 243 MRLCWKERPEDRPTFDYLRSVLEDFFTATE 272 (279)
T ss_dssp HHHHTCSSGGGSCCHHHHHHHHHHHHHHC-
T ss_pred HHHHhccChhhCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999876543
No 120
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=1.1e-35 Score=329.28 Aligned_cols=246 Identities=23% Similarity=0.357 Sum_probs=207.4
Q ss_pred ccCCceeeccCceeEEEEEEc-----CCcEEEEEEeccCCc-chHHHHHHHHHHHHhcCCCCeeeEEeeeecC--CceEE
Q 001988 728 FAENNIIGIGGFGSVYRARLE-----DGVEIAIKVFHPQCA-STLKSFEAECEVIKNIRHRNLVKIISSCSND--DFKAL 799 (985)
Q Consensus 728 ~~~~~~ig~G~~g~V~~~~~~-----~~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l~h~niv~l~~~~~~~--~~~~l 799 (985)
|+..+.||+|+||.||+|.+. +++.||||+++.... ...+.+.+|++++++++||||+++++++.+. ...++
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 112 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL 112 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence 488899999999999998653 688999999986633 3456789999999999999999999999874 56789
Q ss_pred EEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCC
Q 001988 800 VLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGE 879 (985)
Q Consensus 800 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~ 879 (985)
||||+++|+|.+++... .+++..++.++.|++.||+|| |+.||+||||||+||+++.++.+||+|||+++.+...
T Consensus 113 v~e~~~~~~L~~~l~~~--~~~~~~~~~i~~~l~~~l~~L---H~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~ 187 (318)
T 3lxp_A 113 VMEYVPLGSLRDYLPRH--SIGLAQLLLFAQQICEGMAYL---HAQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEG 187 (318)
T ss_dssp EECCCTTCBHHHHGGGS--CCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEECTTCCEEECCGGGCEECCTT
T ss_pred EEecccCCcHHHHHhhC--CCCHHHHHHHHHHHHHHHHHH---HhCCccCCCCchheEEEcCCCCEEECCcccccccccc
Confidence 99999999999999875 489999999999999999999 7899999999999999999999999999999987543
Q ss_pred CCc-ceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh-----------------------
Q 001988 880 DES-TMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF----------------------- 935 (985)
Q Consensus 880 ~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~----------------------- 935 (985)
... .......+|+.|+|||.+.+..++.++|+ |++|+++++++++..++......
T Consensus 188 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (318)
T 3lxp_A 188 HEYYRVREDGDSPVFWYAPECLKEYKFYYASDV-WSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLER 266 (318)
T ss_dssp CSEEEC---CCCCGGGCCHHHHHHCEEEHHHHH-HHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred ccccccccCCCCCceeeChHHhcCCCCCcHHHH-HHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHhc
Confidence 322 12334458889999999999999999999 99999999999987654432111
Q ss_pred ----hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhcc
Q 001988 936 ----AAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLSK 979 (985)
Q Consensus 936 ----~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~~ 979 (985)
..+..++.++.+++.+||..||.+||++.|+++.|+++.+.+..
T Consensus 267 ~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~~ 314 (318)
T 3lxp_A 267 GERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYQG 314 (318)
T ss_dssp TCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhhcc
Confidence 01123567899999999999999999999999999999987654
No 121
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=4.2e-36 Score=327.80 Aligned_cols=248 Identities=23% Similarity=0.385 Sum_probs=212.6
Q ss_pred HHhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEE
Q 001988 723 RATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVL 801 (985)
Q Consensus 723 ~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~ 801 (985)
...++|+..+.||+|+||.||+|.+. +++.||+|++... ....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 10 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 88 (288)
T 3kfa_A 10 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIT 88 (288)
T ss_dssp CCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC-STHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEE
T ss_pred ccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEE
Confidence 35678999999999999999999976 5889999999755 345678899999999999999999999999999999999
Q ss_pred eccCCCChHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCC
Q 001988 802 EYMSNGSLEDCLHSS-NCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGED 880 (985)
Q Consensus 802 e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~ 880 (985)
||+++++|.+++... ...+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++......
T Consensus 89 e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~l---H~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~ 165 (288)
T 3kfa_A 89 EFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYL---EKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT 165 (288)
T ss_dssp ECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHH---HHHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSS
T ss_pred EcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHH---HHCCccCCCCCcceEEEcCCCCEEEccCccceeccCCc
Confidence 999999999999864 34689999999999999999999 78899999999999999999999999999998765332
Q ss_pred CcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhh------------hhHHHHHHHHHH
Q 001988 881 ESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHF------------AAKEQCLLSIFS 947 (985)
Q Consensus 881 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~------------~~~~~~~~~l~~ 947 (985)
........+|+.|+|||.+.+..++.++|+ |++|++++++++ +..+....... ..+..+++++.+
T Consensus 166 -~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~~ll~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (288)
T 3kfa_A 166 -YTAHAGAKFPIKWTAPESLAYNKFSIKSDV-WAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYE 243 (288)
T ss_dssp -SEEETTEEECGGGCCHHHHHHCCCCHHHHH-HHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTCCCCCCTTCCHHHHH
T ss_pred -cccccCCccccCcCChhhhccCCCCchhhH-HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhccCCCCCCCCCCHHHHH
Confidence 233344557889999999999999999999 999999999998 66554432111 112345678999
Q ss_pred HHHHccCCCCCCCCCHHHHHHHHHHhHhh
Q 001988 948 LALECTMESPEKRIDAKDTITRLLKIRDT 976 (985)
Q Consensus 948 l~~~cl~~~P~~RPt~~ev~~~L~~i~~~ 976 (985)
++.+|+..||.+||++.|+++.|+.+.++
T Consensus 244 li~~~l~~dp~~Rps~~~~~~~l~~~~~~ 272 (288)
T 3kfa_A 244 LMRACWQWNPSDRPSFAEIHQAFETMFQE 272 (288)
T ss_dssp HHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCChhhCcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999987764
No 122
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.7e-36 Score=332.71 Aligned_cols=248 Identities=22% Similarity=0.349 Sum_probs=201.2
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCc----EEEEEEeccC-CcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGV----EIAIKVFHPQ-CASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKA 798 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~----~vAvK~~~~~-~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~ 798 (985)
.++|+..+.||+|+||.||+|++. +++ +||+|.+... .....+.+.+|+.++++++||||+++++++.... .+
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~ 92 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EE
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ce
Confidence 467899999999999999999864 444 3578877544 2345678999999999999999999999998765 78
Q ss_pred EEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccC
Q 001988 799 LVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSG 878 (985)
Q Consensus 799 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~ 878 (985)
+|+||+++|+|.+++......+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++.+..
T Consensus 93 ~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~L---H~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~ 169 (327)
T 3lzb_A 93 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYL---EDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGA 169 (327)
T ss_dssp EEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCCGGGEEEEETTEEEECCTTC------
T ss_pred EEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH---hhCCCcCCCCCHHHEEEcCCCCEEEccCcceeEccC
Confidence 99999999999999988777899999999999999999999 788999999999999999999999999999988754
Q ss_pred CCCcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhh------------hhHHHHHHHH
Q 001988 879 EDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHF------------AAKEQCLLSI 945 (985)
Q Consensus 879 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~------------~~~~~~~~~l 945 (985)
...........+|+.|+|||.+.+..++.++|+ |++|++++++++ +..++...... ..+..++.++
T Consensus 170 ~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di-~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 248 (327)
T 3lzb_A 170 EEKEYHAEGGKVPIKWMALESILHRIYTHQSDV-WSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDV 248 (327)
T ss_dssp ----------CCCGGGSCHHHHHHCCCCHHHHH-HHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTBCHHH
T ss_pred ccccccccCCCccccccCHHHHcCCCCChHHHH-HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCccCCHHH
Confidence 443333444557889999999999999999999 999999999998 77665443211 1223356789
Q ss_pred HHHHHHccCCCCCCCCCHHHHHHHHHHhHhhh
Q 001988 946 FSLALECTMESPEKRIDAKDTITRLLKIRDTL 977 (985)
Q Consensus 946 ~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~ 977 (985)
.+++.+||..||.+||++.|+++.|+++.+..
T Consensus 249 ~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~ 280 (327)
T 3lzb_A 249 YMIMRKCWMIDADSRPKFRELIIEFSKMARDP 280 (327)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHTSH
T ss_pred HHHHHHHcCCChhHCcCHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999988543
No 123
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=7.6e-36 Score=333.12 Aligned_cols=254 Identities=20% Similarity=0.297 Sum_probs=212.4
Q ss_pred HHHhcCccCCceeeccCceeEEEEEEc-C-----CcEEEEEEeccCCc-chHHHHHHHHHHHHhc-CCCCeeeEEeeeec
Q 001988 722 LRATDNFAENNIIGIGGFGSVYRARLE-D-----GVEIAIKVFHPQCA-STLKSFEAECEVIKNI-RHRNLVKIISSCSN 793 (985)
Q Consensus 722 ~~~~~~~~~~~~ig~G~~g~V~~~~~~-~-----~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l-~h~niv~l~~~~~~ 793 (985)
....++|...+.||+|+||.||+|... + .+.||+|.+..... ...+.+.+|+++++++ +||||+++++++.+
T Consensus 42 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~ 121 (333)
T 2i1m_A 42 EFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTH 121 (333)
T ss_dssp BCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred cCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEec
Confidence 345678999999999999999999864 2 24799999976533 3456789999999999 89999999999999
Q ss_pred CCceEEEEeccCCCChHHHhhcC-------------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEc
Q 001988 794 DDFKALVLEYMSNGSLEDCLHSS-------------NCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLD 860 (985)
Q Consensus 794 ~~~~~lv~e~~~~gsL~~~l~~~-------------~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~ 860 (985)
.+..++||||+++|+|.+++... ...+++..+..++.|++.||+|| |++||+||||||+||+++
T Consensus 122 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l---H~~~ivH~Dlkp~NIl~~ 198 (333)
T 2i1m_A 122 GGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFL---ASKNCIHRDVAARNVLLT 198 (333)
T ss_dssp SSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGCEEE
T ss_pred CCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHH---hcCCcccCCcccceEEEC
Confidence 99999999999999999998753 23578999999999999999999 788999999999999999
Q ss_pred CCCcEEEecccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhh----
Q 001988 861 EDMVAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHF---- 935 (985)
Q Consensus 861 ~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~---- 935 (985)
.++.+||+|||+++...............+|+.|+|||.+.+..++.++|+ |++|++++++++ +..+.......
T Consensus 199 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~el~t~g~~p~~~~~~~~~~~ 277 (333)
T 2i1m_A 199 NGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDV-WSYGILLWEIFSLGLNPYPGILVNSKFY 277 (333)
T ss_dssp GGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHH-HHHHHHHHHHTTTSCCSSTTCCSSHHHH
T ss_pred CCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHH-HHHHHHHHHHHcCCCCCCcccchhHHHH
Confidence 999999999999987654443333444567889999999999999999999 999999999998 65544322111
Q ss_pred ---------hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhcc
Q 001988 936 ---------AAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLSK 979 (985)
Q Consensus 936 ---------~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~~ 979 (985)
..+..+++++.+++.+||+.||.+||++.|+++.|+++.+..++
T Consensus 278 ~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~~~ 330 (333)
T 2i1m_A 278 KLVKDGYQMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQEQAQEDRR 330 (333)
T ss_dssp HHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHHHhhhc
Confidence 01222567899999999999999999999999999998876554
No 124
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=3e-36 Score=329.20 Aligned_cols=241 Identities=21% Similarity=0.295 Sum_probs=203.9
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CC-------cEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCc
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DG-------VEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDF 796 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~-------~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~ 796 (985)
.++|...+.||+|+||.||+|+.. ++ +.||+|++........+.+.+|++++++++||||+++++++.+++.
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 86 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDE 86 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTC
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCC
Confidence 467889999999999999999865 33 5799999987666667889999999999999999999999999999
Q ss_pred eEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCc--------EEEe
Q 001988 797 KALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMV--------AHLS 868 (985)
Q Consensus 797 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~--------~kl~ 868 (985)
.++||||+++|+|.+++......+++..+..++.|++.||+|| |++||+||||||+||+++.++. +||+
T Consensus 87 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~L---H~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~ 163 (289)
T 4fvq_A 87 NILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFL---EENTLIHGNVCAKNILLIREEDRKTGNPPFIKLS 163 (289)
T ss_dssp CEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHH---HHTTCCCCCCCGGGEEEEECCBGGGTBCCEEEEC
T ss_pred CEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH---hhCCeECCCcCcceEEEecCCcccccccceeeec
Confidence 9999999999999999988766689999999999999999999 7899999999999999998887 9999
Q ss_pred cccCceeccCCCCcceeccccccccccccccccc-Cccchhhhcccccccchhhhccccc-ccCcchhhhh---------
Q 001988 869 DFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFV-GELSLKRWVNDLLPVSLVEVVDKSL-LSGEEKHFAA--------- 937 (985)
Q Consensus 869 DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~dv~~~~g~~~~~i~~~~~-~~~~~~~~~~--------- 937 (985)
|||++..... .....||+.|+|||.+.+ ..++.++|+ |++|+++++++++.. +.........
T Consensus 164 Dfg~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~Di-wslG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~ 236 (289)
T 4fvq_A 164 DPGISITVLP------KDILQERIPWVPPECIENPKNLNLATDK-WSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQ 236 (289)
T ss_dssp CCCSCTTTSC------HHHHHHTTTTSCHHHHHCGGGCCHHHHH-HHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCC
T ss_pred cCcccccccC------ccccCCcCcccCHHHhCCCCCCCchhHH-HHHHHHHHHHHcCCCCCccccchHHHHHHhhccCC
Confidence 9999875421 123458899999999987 778999999 999999999999543 3222211110
Q ss_pred -HHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHh
Q 001988 938 -KEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRD 975 (985)
Q Consensus 938 -~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~ 975 (985)
+...++++.+++.+||+.||.+||++.|+++.|+++..
T Consensus 237 ~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~ 275 (289)
T 4fvq_A 237 LPAPKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFT 275 (289)
T ss_dssp CCCCSSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC-
T ss_pred CCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence 11134568899999999999999999999999998765
No 125
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=1.1e-35 Score=336.79 Aligned_cols=232 Identities=22% Similarity=0.239 Sum_probs=197.1
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc---chHHHHHHHHHHHHhc-CCCCeeeEEeeeecCCceEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA---STLKSFEAECEVIKNI-RHRNLVKIISSCSNDDFKAL 799 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~---~~~~~~~~E~~il~~l-~h~niv~l~~~~~~~~~~~l 799 (985)
.++|+..+.||+|+||.||+|+.+ +++.||+|++++... .....+.+|..+++++ +||||+++++++.+.+..++
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 130 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 130 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence 467999999999999999999976 688899999976522 2345678999999887 89999999999999999999
Q ss_pred EEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCC
Q 001988 800 VLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGE 879 (985)
Q Consensus 800 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~ 879 (985)
||||+++|+|.+++...+ .+++..+..++.||+.||+|| |++||+||||||+|||++.++.+||+|||+|+.....
T Consensus 131 V~E~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~L---H~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~~ 206 (396)
T 4dc2_A 131 VIEYVNGGDLMFHMQRQR-KLPEEHARFYSAEISLALNYL---HERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP 206 (396)
T ss_dssp EEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHH---HHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCT
T ss_pred EEEcCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH---HHCCEEeccCCHHHEEECCCCCEEEeecceeeecccC
Confidence 999999999999998754 689999999999999999999 7899999999999999999999999999999863222
Q ss_pred CCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh--------------------hhHH
Q 001988 880 DESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF--------------------AAKE 939 (985)
Q Consensus 880 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~--------------------~~~~ 939 (985)
.......+||+.|+|||++.+..++.++|+ |++|++++++++|..++...... ..+.
T Consensus 207 --~~~~~~~~gt~~Y~aPE~l~~~~~~~~~Di-wslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~ 283 (396)
T 4dc2_A 207 --GDTTSTFCGTPNYIAPEILRGEDYGFSVDW-WALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPR 283 (396)
T ss_dssp --TCCBCCCCBCGGGCCHHHHTTCCBCTHHHH-HHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCCCCCT
T ss_pred --CCccccccCCcccCCchhhcCCCCChHHHH-HHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccccCCCC
Confidence 223445689999999999999999999999 99999999999998876421100 0112
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCH
Q 001988 940 QCLLSIFSLALECTMESPEKRIDA 963 (985)
Q Consensus 940 ~~~~~l~~l~~~cl~~~P~~RPt~ 963 (985)
..+.++.+++.+||..||.+||++
T Consensus 284 ~~s~~~~~li~~lL~~dP~~R~~~ 307 (396)
T 4dc2_A 284 SLSVKAASVLKSFLNKDPKERLGC 307 (396)
T ss_dssp TSCHHHHHHHHHHTCSCTTTSTTC
T ss_pred cCCHHHHHHHHHHhcCCHhHcCCC
Confidence 245778999999999999999996
No 126
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=1.4e-35 Score=325.53 Aligned_cols=251 Identities=23% Similarity=0.379 Sum_probs=206.1
Q ss_pred hcCccCCceeeccCceeEEEEEEcC----CcEEEEEEeccCCc-chHHHHHHHHHHHHhcCCCCeeeEEeeee-cCCceE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLED----GVEIAIKVFHPQCA-STLKSFEAECEVIKNIRHRNLVKIISSCS-NDDFKA 798 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~~----~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l~h~niv~l~~~~~-~~~~~~ 798 (985)
..+|...+.||+|+||.||+|+..+ ...||+|.+..... ...+.+.+|++++++++||||+++++++. .++..+
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 103 (298)
T 3f66_A 24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL 103 (298)
T ss_dssp GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceE
Confidence 3567888999999999999998642 33589999876433 34567899999999999999999999864 456789
Q ss_pred EEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccC
Q 001988 799 LVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSG 878 (985)
Q Consensus 799 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~ 878 (985)
+||||+++|+|.+++......+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++.+..
T Consensus 104 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~l---H~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~ 180 (298)
T 3f66_A 104 VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYD 180 (298)
T ss_dssp EEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSC
T ss_pred EEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH---HhCCccCCCCchheEEECCCCCEEECcccccccccc
Confidence 99999999999999987777789999999999999999999 789999999999999999999999999999987643
Q ss_pred CCC--cceecccccccccccccccccCccchhhhcccccccchhhhccc-ccccCcchhhh------------hHHHHHH
Q 001988 879 EDE--STMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDK-SLLSGEEKHFA------------AKEQCLL 943 (985)
Q Consensus 879 ~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~-~~~~~~~~~~~------------~~~~~~~ 943 (985)
... ........+|+.|+|||.+.+..++.++|+ |++|+++++++++ ..+........ .+..+++
T Consensus 181 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (298)
T 3f66_A 181 KEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDV-WSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPD 259 (298)
T ss_dssp GGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHH-HHHHHHHHHHHTTSCCSSTTSCTTTHHHHHHTTCCCCCCTTCCH
T ss_pred cchhccccccCCCCCccccChHHhcCCCCChHHHH-HHHHHHHHHHHhCCCCCCccCCHHHHHHHHhcCCCCCCCccCCH
Confidence 221 112234457889999999999999999999 9999999999984 43333221111 1233567
Q ss_pred HHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhcc
Q 001988 944 SIFSLALECTMESPEKRIDAKDTITRLLKIRDTLSK 979 (985)
Q Consensus 944 ~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~~ 979 (985)
++.+++.+||..+|.+||++.|+++.|+++.+.+..
T Consensus 260 ~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~~ 295 (298)
T 3f66_A 260 PLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIG 295 (298)
T ss_dssp HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhcc
Confidence 899999999999999999999999999999886543
No 127
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=2.4e-35 Score=322.52 Aligned_cols=236 Identities=20% Similarity=0.276 Sum_probs=196.9
Q ss_pred cCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc--chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEe
Q 001988 726 DNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA--STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLE 802 (985)
Q Consensus 726 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e 802 (985)
++|+..+.||+|+||+||+|+.. +++.||+|++..... .....+.+|++++++++||||+++++++.+++..++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 81 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence 57889999999999999999975 789999999976533 234678899999999999999999999999999999999
Q ss_pred ccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCCc
Q 001988 803 YMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDES 882 (985)
Q Consensus 803 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~~ 882 (985)
|+++ ++.+.+......+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++......
T Consensus 82 ~~~~-~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~l---H~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~-- 155 (292)
T 3o0g_A 82 FCDQ-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFC---HSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPV-- 155 (292)
T ss_dssp CCSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSCC--
T ss_pred cCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH---HhCCeecCCCCHHHEEEcCCCCEEEeecccceecCCcc--
Confidence 9975 77777766666799999999999999999999 78899999999999999999999999999998764322
Q ss_pred ceecccccccccccccccccCc-cchhhhcccccccchhhhcccccccC-cchhhhh-----------------------
Q 001988 883 TMRTQTLATIGYMAPDEIFVGE-LSLKRWVNDLLPVSLVEVVDKSLLSG-EEKHFAA----------------------- 937 (985)
Q Consensus 883 ~~~~~~~gt~~y~aPE~~~~~~-~~~~~dv~~~~g~~~~~i~~~~~~~~-~~~~~~~----------------------- 937 (985)
.......||+.|+|||.+.+.. ++.++|+ |++|+++++++++..+.. .......
T Consensus 156 ~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di-wslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 234 (292)
T 3o0g_A 156 RCYSAEVVTLWYRPPDVLFGAKLYSTSIDM-WSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLP 234 (292)
T ss_dssp SCCCSCCSCGGGCCHHHHTTCSCCCTHHHH-HHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGST
T ss_pred ccccCCccccCCcChHHHcCCCCcCchHHH-HHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcccc
Confidence 2233456899999999988766 7999999 999999999997655421 1111000
Q ss_pred -----------------HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 938 -----------------KEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 938 -----------------~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
....++++.+++.+|+..||++|||+.|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 282 (292)
T 3o0g_A 235 DYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ 282 (292)
T ss_dssp TCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred cccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence 0124567889999999999999999999875
No 128
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=1.5e-35 Score=333.64 Aligned_cols=238 Identities=23% Similarity=0.322 Sum_probs=203.3
Q ss_pred HhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc--chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEE
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA--STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv 800 (985)
..++|...+.||+|+||.||+|... +++.||+|++..... ...+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv 106 (362)
T 2bdw_A 27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV 106 (362)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 4568999999999999999999875 789999999976532 3456788999999999999999999999999999999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCC---cEEEecccCceecc
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDM---VAHLSDFGMAKLLS 877 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~---~~kl~DfGla~~~~ 877 (985)
|||+++|+|.+++.... .+++..+..++.||++||+|| |++||+||||||+||+++.++ .+||+|||+++...
T Consensus 107 ~e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~al~~l---H~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~ 182 (362)
T 2bdw_A 107 FDLVTGGELFEDIVARE-FYSEADASHCIQQILESIAYC---HSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVN 182 (362)
T ss_dssp ECCCCSCBHHHHHTTCS-CCCHHHHHHHHHHHHHHHHHH---HHTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCT
T ss_pred EecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH---HHCCeEeccCchHHEEEecCCCCCCEEEeecCcceEec
Confidence 99999999999987654 689999999999999999999 788999999999999998654 59999999998765
Q ss_pred CCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh---------------hhHHHHH
Q 001988 878 GEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF---------------AAKEQCL 942 (985)
Q Consensus 878 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~---------------~~~~~~~ 942 (985)
... .....+||+.|+|||++.+..++.++|+ |++|+++++++++..++...... .....++
T Consensus 183 ~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Di-wslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 258 (362)
T 2bdw_A 183 DSE---AWHGFAGTPGYLSPEVLKKDPYSKPVDI-WACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVT 258 (362)
T ss_dssp TCC---SCCCSCSCTTTCCHHHHTTCCCCTHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTGGGGSC
T ss_pred CCc---ccccCCCCccccCHHHHccCCCCchhhH-HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCC
Confidence 322 2234579999999999999999999999 99999999999998765432111 1112356
Q ss_pred HHHHHHHHHccCCCCCCCCCHHHHHHH
Q 001988 943 LSIFSLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 943 ~~l~~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
+++.+++.+||..||++||++.|+++.
T Consensus 259 ~~~~~li~~~L~~dP~~R~t~~e~l~h 285 (362)
T 2bdw_A 259 PEAKSLIDSMLTVNPKKRITADQALKV 285 (362)
T ss_dssp HHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred HHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 789999999999999999999998764
No 129
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=9.9e-36 Score=336.36 Aligned_cols=233 Identities=19% Similarity=0.292 Sum_probs=197.3
Q ss_pred cCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEeccCCC
Q 001988 729 AENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLEYMSNG 807 (985)
Q Consensus 729 ~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e~~~~g 807 (985)
...+.||+|+||.||+|+.. +|+.||+|+++.......+.+.+|++++++++||||+++++++.+.+..++||||+++|
T Consensus 92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~ 171 (373)
T 2x4f_A 92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGG 171 (373)
T ss_dssp EEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTC
T ss_pred ecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCC
Confidence 34678999999999999864 78999999998776566778999999999999999999999999999999999999999
Q ss_pred ChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEE--cCCCcEEEecccCceeccCCCCccee
Q 001988 808 SLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLL--DEDMVAHLSDFGMAKLLSGEDESTMR 885 (985)
Q Consensus 808 sL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill--~~~~~~kl~DfGla~~~~~~~~~~~~ 885 (985)
+|.+++......+++..+..++.|++.||+|| |+.||+||||||+||++ +.++.+||+|||+++.+..... .
T Consensus 172 ~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~L---H~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~---~ 245 (373)
T 2x4f_A 172 ELFDRIIDESYNLTELDTILFMKQICEGIRHM---HQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK---L 245 (373)
T ss_dssp EEHHHHHHTGGGCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCB---C
T ss_pred cHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH---HHCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccc---c
Confidence 99999987666789999999999999999999 78999999999999999 5678999999999998753322 2
Q ss_pred cccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh---------------hHHHHHHHHHHHHH
Q 001988 886 TQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA---------------AKEQCLLSIFSLAL 950 (985)
Q Consensus 886 ~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~---------------~~~~~~~~l~~l~~ 950 (985)
...+||+.|+|||.+..+.++.++|+ |++|+++++++++..+........ ....+++++.+++.
T Consensus 246 ~~~~gt~~y~aPE~~~~~~~~~~~Di-wslG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~ 324 (373)
T 2x4f_A 246 KVNFGTPEFLAPEVVNYDFVSFPTDM-WSVGVIAYMLLSGLSPFLGDNDAETLNNILACRWDLEDEEFQDISEEAKEFIS 324 (373)
T ss_dssp CCCCSSCTTCCHHHHTTCBCCHHHHH-HHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCSCSGGGTTSCHHHHHHHH
T ss_pred ccccCCCcEeChhhccCCCCCcHHhH-HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCChhhhccCCHHHHHHHH
Confidence 33469999999999999999999999 999999999999887654332111 11235678999999
Q ss_pred HccCCCCCCCCCHHHHHH
Q 001988 951 ECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 951 ~cl~~~P~~RPt~~ev~~ 968 (985)
+|+..||.+||++.|+++
T Consensus 325 ~~L~~dp~~Rps~~e~l~ 342 (373)
T 2x4f_A 325 KLLIKEKSWRISASEALK 342 (373)
T ss_dssp TTSCSSGGGSCCHHHHHH
T ss_pred HHcCCChhhCCCHHHHhc
Confidence 999999999999999987
No 130
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.2e-35 Score=325.87 Aligned_cols=243 Identities=22% Similarity=0.282 Sum_probs=204.9
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC-cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCC--ceEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC-ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDD--FKALV 800 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~-~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~--~~~lv 800 (985)
.++|...+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++...+ ..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (319)
T 4euu_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (319)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEE
Confidence 467899999999999999999976 68999999997543 234567889999999999999999999998765 77999
Q ss_pred EeccCCCChHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEE----cCCCcEEEecccCce
Q 001988 801 LEYMSNGSLEDCLHSSN--CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLL----DEDMVAHLSDFGMAK 874 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~--~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill----~~~~~~kl~DfGla~ 874 (985)
|||+++|+|.+++.... ..+++..+..++.|++.||+|| |++||+||||||+||++ +.++.+||+|||+++
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~L---H~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~ 164 (319)
T 4euu_A 88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHL---RENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR 164 (319)
T ss_dssp EECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCE
T ss_pred EeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHH---HHCCEecCCCCHHHEEEeccCCCCceEEEccCCCce
Confidence 99999999999998653 2389999999999999999999 78999999999999999 888899999999998
Q ss_pred eccCCCCcceecccccccccccccccc--------cCccchhhhcccccccchhhhcccccccCcchhh-----------
Q 001988 875 LLSGEDESTMRTQTLATIGYMAPDEIF--------VGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF----------- 935 (985)
Q Consensus 875 ~~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~----------- 935 (985)
.+..... .....||+.|+|||.+. ...++.++|+ |++|+++++++++..++......
T Consensus 165 ~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~Di-wslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~ 240 (319)
T 4euu_A 165 ELEDDEQ---FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDL-WSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKII 240 (319)
T ss_dssp ECCTTCC---BCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHH-HHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHH
T ss_pred ecCCCCc---eeecccCCCccCHHHhhhccccccccCCCCcHHHH-HHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHh
Confidence 8753332 23456999999999886 5788999999 99999999999988665321100
Q ss_pred -----------------------------hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhH
Q 001988 936 -----------------------------AAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIR 974 (985)
Q Consensus 936 -----------------------------~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~ 974 (985)
......++.+.+++.+||..||++||++.|+++...+..
T Consensus 241 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~~ 308 (319)
T 4euu_A 241 TGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDIL 308 (319)
T ss_dssp HHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHT
T ss_pred cCCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHHh
Confidence 112456778999999999999999999999999887654
No 131
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=1.9e-36 Score=333.04 Aligned_cols=247 Identities=23% Similarity=0.343 Sum_probs=186.5
Q ss_pred hcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHh--cCCCCeeeEEeeeecCC----ceE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKN--IRHRNLVKIISSCSNDD----FKA 798 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~--l~h~niv~l~~~~~~~~----~~~ 798 (985)
.++|...+.||+|+||.||+|+.. ++.||||++... ....+.+|.+++.. ++||||+++++++...+ ..+
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 77 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW 77 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CT-TSCEEEEECC-T---THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEEEE
T ss_pred cceeeehhhccCCCCeEEEEEEEc-CcceEEEEeccc---chhhHHHHHHHHHHHhccCcceeeeeeecccCCCccceeE
Confidence 367999999999999999999875 899999998644 34567788888887 79999999999998776 789
Q ss_pred EEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHh-----cCCCCeEeCCCCCCCEEEcCCCcEEEecccCc
Q 001988 799 LVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHF-----GHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMA 873 (985)
Q Consensus 799 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~-----~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla 873 (985)
+||||+++|+|.+++... .+++..+..++.|++.||+|||. .|+++|+||||||+||+++.++.+||+|||++
T Consensus 78 lv~e~~~~g~L~~~l~~~--~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nil~~~~~~~kl~DFg~a 155 (303)
T 3gxj_A 78 LVSDYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLA 155 (303)
T ss_dssp EEEECCTTCCHHHHHHHC--CBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC-CCCSCCCGGGC-CCTTCCC-BCCCCC-
T ss_pred EEEeccCCCCHHHHHhcc--CcchHHHHHHHHHHHHHHHHHHHHHhhhccCCCEeeCcCCHHHeEECCCCCEEEeecCcc
Confidence 999999999999999764 46778889999999999999931 11999999999999999999999999999999
Q ss_pred eeccCCCCcc--eecccccccccccccccccC------ccchhhhcccccccchhhhcccc----------cccCcc---
Q 001988 874 KLLSGEDEST--MRTQTLATIGYMAPDEIFVG------ELSLKRWVNDLLPVSLVEVVDKS----------LLSGEE--- 932 (985)
Q Consensus 874 ~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~dv~~~~g~~~~~i~~~~----------~~~~~~--- 932 (985)
+......... ......||+.|+|||.+.+. .++.++|+ |++|+++++++++. .+....
T Consensus 156 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di-wslG~il~el~~g~~~~~~~~~~~~p~~~~~~~ 234 (303)
T 3gxj_A 156 VRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADI-YAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPS 234 (303)
T ss_dssp CCEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHH-HC-CCCC-CTGGGBCBTTBC-CCCCTTTTTCC-
T ss_pred eeccCCCcccccccCCCCcCccccCHhhhcCcccccccccCcchhH-HHHHHHHHHHHhcCCCccccceeeccccccCCC
Confidence 8765433221 12334699999999998776 55678999 99999999999983 222110
Q ss_pred --------------------hhhhhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhc
Q 001988 933 --------------------KHFAAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLS 978 (985)
Q Consensus 933 --------------------~~~~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~ 978 (985)
+.......+++.+.+++.+||..||.+||++.|+++.|+++.+...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~l~~~~~ 300 (303)
T 3gxj_A 235 DPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQEG 300 (303)
T ss_dssp CCCCC-CHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHC-CCC--
T ss_pred CccHHHHHHHHHHhhcCCCccccccchhhHHHHHHHHHHHhccCcccCCCHHHHHHHHHHhhhhcc
Confidence 0000112466789999999999999999999999999999887543
No 132
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=2.2e-36 Score=335.85 Aligned_cols=254 Identities=21% Similarity=0.310 Sum_probs=211.6
Q ss_pred HHHHHHHhcCccCCceeeccCceeEEEEEEc------CCcEEEEEEeccCCc-chHHHHHHHHHHHHhcCCCCeeeEEee
Q 001988 718 YFELLRATDNFAENNIIGIGGFGSVYRARLE------DGVEIAIKVFHPQCA-STLKSFEAECEVIKNIRHRNLVKIISS 790 (985)
Q Consensus 718 ~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~------~~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l~h~niv~l~~~ 790 (985)
..++....++|...+.||+|+||.||+|+.. +++.||+|++..... .....+.+|++++++++||||++++++
T Consensus 17 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~ 96 (322)
T 1p4o_A 17 PDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGV 96 (322)
T ss_dssp CCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEE
T ss_pred hhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEE
Confidence 3444556788999999999999999999754 467899999975533 344578899999999999999999999
Q ss_pred eecCCceEEEEeccCCCChHHHhhcCC---------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcC
Q 001988 791 CSNDDFKALVLEYMSNGSLEDCLHSSN---------CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDE 861 (985)
Q Consensus 791 ~~~~~~~~lv~e~~~~gsL~~~l~~~~---------~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~ 861 (985)
+.+.+..++||||+++|+|.+++...+ ..+++..+.+++.|++.||+|| |++||+||||||+||+++.
T Consensus 97 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~l---H~~~i~H~dikp~NIli~~ 173 (322)
T 1p4o_A 97 VSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYL---NANKFVHRDLAARNCMVAE 173 (322)
T ss_dssp ECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHH---HHTTCBCSCCSGGGEEECT
T ss_pred EccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHH---HHCCCccCCCccceEEEcC
Confidence 999999999999999999999987531 3568999999999999999999 7889999999999999999
Q ss_pred CCcEEEecccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhh-----
Q 001988 862 DMVAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHF----- 935 (985)
Q Consensus 862 ~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~----- 935 (985)
++.+||+|||+++...............+|+.|+|||.+.+..++.++|+ |++|++++++++ +..+.......
T Consensus 174 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~el~~~g~~p~~~~~~~~~~~~ 252 (322)
T 1p4o_A 174 DFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDV-WSFGVVLWEIATLAEQPYQGLSNEQVLRF 252 (322)
T ss_dssp TCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHH-HHHHHHHHHHHHTSCCTTTTSCHHHHHHH
T ss_pred CCeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhH-HHHHHHHHHHHhcCCCccccCCHHHHHHH
Confidence 99999999999987643332222334457899999999999999999999 999999999998 55544332111
Q ss_pred -------hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHh
Q 001988 936 -------AAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRD 975 (985)
Q Consensus 936 -------~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~ 975 (985)
..+..++..+.+++.+||..+|.+||++.|+++.|+++.+
T Consensus 253 ~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~ 299 (322)
T 1p4o_A 253 VMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEME 299 (322)
T ss_dssp HHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred HHcCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhc
Confidence 1123456789999999999999999999999999988754
No 133
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=5.9e-36 Score=333.74 Aligned_cols=238 Identities=22% Similarity=0.273 Sum_probs=201.4
Q ss_pred HHhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC---cchHHHHHHHHHHHHhc-CCCCeeeEEeeeecCCce
Q 001988 723 RATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC---ASTLKSFEAECEVIKNI-RHRNLVKIISSCSNDDFK 797 (985)
Q Consensus 723 ~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~---~~~~~~~~~E~~il~~l-~h~niv~l~~~~~~~~~~ 797 (985)
...++|...+.||+|+||.||+|+.+ +++.||+|++++.. ......+..|.++++++ +||||+++++++.+.+..
T Consensus 14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~ 93 (345)
T 1xjd_A 14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL 93 (345)
T ss_dssp --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence 45688999999999999999999975 78999999997542 22345678899999987 899999999999999999
Q ss_pred EEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceecc
Q 001988 798 ALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLS 877 (985)
Q Consensus 798 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~ 877 (985)
++||||++||+|.+++...+ .+++..+..++.|++.||+|| |++||+||||||+||+++.+|.+||+|||+++...
T Consensus 94 ~lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~L---H~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~ 169 (345)
T 1xjd_A 94 FFVMEYLNGGDLMYHIQSCH-KFDLSRATFYAAEIILGLQFL---HSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENM 169 (345)
T ss_dssp EEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHH---HHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCC
T ss_pred EEEEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH---HHCCeEeCCCChhhEEECCCCCEEEeEChhhhhcc
Confidence 99999999999999998654 689999999999999999999 78899999999999999999999999999998643
Q ss_pred CCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhhh-----------HHHHHHHHH
Q 001988 878 GEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA-----------KEQCLLSIF 946 (985)
Q Consensus 878 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~l~ 946 (985)
... ......+||+.|+|||.+.+..++.++|+ |++|++++++++|..+......... +...++++.
T Consensus 170 ~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Di-wslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~ 246 (345)
T 1xjd_A 170 LGD--AKTNTFCGTPDYIAPEILLGQKYNHSVDW-WSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRWLEKEAK 246 (345)
T ss_dssp CTT--CCBCCCCSCGGGCCHHHHTTCCBCTHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHH
T ss_pred cCC--CcccCCCCCcccCChhhhcCCCCCChhhh-HHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhCCCCCCcccCHHHH
Confidence 222 22345679999999999999999999999 9999999999999876644322111 122457899
Q ss_pred HHHHHccCCCCCCCCCHH-HHH
Q 001988 947 SLALECTMESPEKRIDAK-DTI 967 (985)
Q Consensus 947 ~l~~~cl~~~P~~RPt~~-ev~ 967 (985)
+++.+|+..||++||++. |+.
T Consensus 247 ~li~~lL~~dp~~R~~~~~~i~ 268 (345)
T 1xjd_A 247 DLLVKLFVREPEKRLGVRGDIR 268 (345)
T ss_dssp HHHHHHSCSSGGGSBTTBSCGG
T ss_pred HHHHHHhcCCHhHcCCChHHHH
Confidence 999999999999999997 554
No 134
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.2e-36 Score=333.67 Aligned_cols=236 Identities=22% Similarity=0.305 Sum_probs=200.8
Q ss_pred hcCccCCceeeccCceeEEEEEE-cCCcEEEEEEeccCC---cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARL-EDGVEIAIKVFHPQC---ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vAvK~~~~~~---~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv 800 (985)
.++|...+.||+|+||.||+|+. .+++.||+|++.... ......+.+|+++++.++||||+++++++.+.+..++|
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 87 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV 87 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 36789999999999999999996 578999999987542 12235789999999999999999999999999999999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCC
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGED 880 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~ 880 (985)
|||+ +|+|.+++...+ .+++..+..++.|++.||+|| |+.||+||||||+||++++++.+||+|||+++......
T Consensus 88 ~E~~-~g~l~~~l~~~~-~l~~~~~~~i~~qi~~aL~~L---H~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~ 162 (336)
T 3h4j_B 88 IEYA-GGELFDYIVEKK-RMTEDEGRRFFQQIICAIEYC---HRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGN 162 (336)
T ss_dssp ECCC-CEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHH---HHHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSB
T ss_pred EECC-CCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH---HHCCeEecCCchhhEEEcCCCCEEEEEeccceeccCCc
Confidence 9999 789999987654 689999999999999999999 78899999999999999999999999999998764322
Q ss_pred CcceecccccccccccccccccCcc-chhhhcccccccchhhhcccccccCcch-----------hhhhHHHHHHHHHHH
Q 001988 881 ESTMRTQTLATIGYMAPDEIFVGEL-SLKRWVNDLLPVSLVEVVDKSLLSGEEK-----------HFAAKEQCLLSIFSL 948 (985)
Q Consensus 881 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~dv~~~~g~~~~~i~~~~~~~~~~~-----------~~~~~~~~~~~l~~l 948 (985)
.....+||+.|+|||.+.+..+ +.++|+ |++|+++++++++..++.... ....++..++++.++
T Consensus 163 ---~~~~~~gt~~y~aPE~~~~~~~~~~~~Di-wslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~l 238 (336)
T 3h4j_B 163 ---FLKTSCGSPNYAAPEVINGKLYAGPEVDV-WSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSCVYVMPDFLSPGAQSL 238 (336)
T ss_dssp ---TTCCCTTSTTTSCGGGSCCSGGGCHHHHH-HHHHHHHHHHHHSSCSSBCSSSTTCBCCCCSSCCCCCTTSCHHHHHH
T ss_pred ---ccccccCCcCcCCHHHHcCCCCCCCccch-hHHHHHHHHHHhCCCCCCCccHHHHHHHHHcCCCCCcccCCHHHHHH
Confidence 2234579999999999988776 688999 999999999999887654321 111233456779999
Q ss_pred HHHccCCCCCCCCCHHHHHHH
Q 001988 949 ALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 949 ~~~cl~~~P~~RPt~~ev~~~ 969 (985)
+.+|+..||.+|||+.|+++.
T Consensus 239 i~~~L~~dP~~Rpt~~eil~h 259 (336)
T 3h4j_B 239 IRRMIVADPMQRITIQEIRRD 259 (336)
T ss_dssp HHTTSCSSGGGSCCHHHHTTC
T ss_pred HHHHcCCChhHCcCHHHHHhC
Confidence 999999999999999999763
No 135
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=2.2e-35 Score=325.89 Aligned_cols=234 Identities=21% Similarity=0.270 Sum_probs=201.6
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC---cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC---ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~---~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv 800 (985)
.++|+..+.||+|+||.||+|+.. +|+.||+|++++.. ....+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv 84 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI 84 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence 367899999999999999999975 79999999997542 12346678999999999999999999999999999999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCC
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGED 880 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~ 880 (985)
|||+++|+|.+++.... .+++.....++.|++.||+|| |++||+||||||+||+++.+|.+||+|||+++.....
T Consensus 85 ~e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~L---H~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~- 159 (318)
T 1fot_A 85 MDYIEGGELFSLLRKSQ-RFPNPVAKFYAAEVCLALEYL---HSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV- 159 (318)
T ss_dssp ECCCCSCBHHHHHHHTS-SCCHHHHHHHHHHHHHHHHHH---HTTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSC-
T ss_pred EeCCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH---HHCCccccCCChheEEEcCCCCEEEeecCcceecCCc-
Confidence 99999999999998754 689999999999999999999 7899999999999999999999999999999876421
Q ss_pred CcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhhh-----------HHHHHHHHHHHH
Q 001988 881 ESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA-----------KEQCLLSIFSLA 949 (985)
Q Consensus 881 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~l~~l~ 949 (985)
....+||+.|+|||.+.+..++.++|+ |++|+++++++++..+......... +...++++.+++
T Consensus 160 ----~~~~~gt~~y~aPE~~~~~~~~~~~Di-wslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li 234 (318)
T 1fot_A 160 ----TYTLCGTPDYIAPEVVSTKPYNKSIDW-WSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPPFFNEDVKDLL 234 (318)
T ss_dssp ----BCCCCSCTTTCCHHHHTTCCBCTTHHH-HHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHH
T ss_pred ----cccccCCccccCHhHhcCCCCCcccch-hhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 234579999999999999999999999 9999999999999876543322111 122456799999
Q ss_pred HHccCCCCCCCC-----CHHHHHH
Q 001988 950 LECTMESPEKRI-----DAKDTIT 968 (985)
Q Consensus 950 ~~cl~~~P~~RP-----t~~ev~~ 968 (985)
.+|+..||.+|| ++.|+++
T Consensus 235 ~~lL~~dp~~R~~~~~~~~~~i~~ 258 (318)
T 1fot_A 235 SRLITRDLSQRLGNLQNGTEDVKN 258 (318)
T ss_dssp HHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred HHHhccCHHHcCCCcCCCHHHHhc
Confidence 999999999999 7888874
No 136
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=2e-35 Score=324.14 Aligned_cols=236 Identities=25% Similarity=0.326 Sum_probs=194.0
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcc--------------------------hHHHHHHHHHHHH
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCAS--------------------------TLKSFEAECEVIK 777 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~--------------------------~~~~~~~E~~il~ 777 (985)
.++|...+.||+|+||.||+|+.. +++.||||++...... ..+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 467999999999999999999865 7899999998754211 1356889999999
Q ss_pred hcCCCCeeeEEeeeec--CCceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCC
Q 001988 778 NIRHRNLVKIISSCSN--DDFKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPS 855 (985)
Q Consensus 778 ~l~h~niv~l~~~~~~--~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~ 855 (985)
+++||||+++++++.+ .+..++||||+++++|.+++.. ..+++..+..++.|+++||+|| |++||+||||||+
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~--~~~~~~~~~~~~~qi~~~l~~l---H~~~ivH~Dlkp~ 166 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL--KPLSEDQARFYFQDLIKGIEYL---HYQKIIHRDIKPS 166 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS--SCCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCCGG
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc--CCCCHHHHHHHHHHHHHHHHHH---HHCCeeccCCCHH
Confidence 9999999999999986 5678999999999999887654 3689999999999999999999 7889999999999
Q ss_pred CEEEcCCCcEEEecccCceeccCCCCcceecccccccccccccccccCc---cchhhhcccccccchhhhcccccccCcc
Q 001988 856 NVLLDEDMVAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGE---LSLKRWVNDLLPVSLVEVVDKSLLSGEE 932 (985)
Q Consensus 856 Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~dv~~~~g~~~~~i~~~~~~~~~~ 932 (985)
||+++.++.+||+|||+++.+.... .......||+.|+|||.+.+.. ++.++|+ |++|+++++++++..++...
T Consensus 167 Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di-~slG~~l~~l~~g~~pf~~~ 243 (298)
T 2zv2_A 167 NLLVGEDGHIKIADFGVSNEFKGSD--ALLSNTVGTPAFMAPESLSETRKIFSGKALDV-WAMGVTLYCFVFGQCPFMDE 243 (298)
T ss_dssp GEEECTTSCEEECCCTTCEECSSSS--CEECCCCSCGGGCCGGGCCTTCCCEESHHHHH-HHHHHHHHHHHHSSCSSCCS
T ss_pred HEEECCCCCEEEecCCCcccccccc--ccccCCcCCccccChhhhccCCCCCCCchhhh-HhHHHHHHHHHHCCCCCCCc
Confidence 9999999999999999998875332 2234457999999999987665 4778899 99999999999998765433
Q ss_pred hhhh-------------hHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 933 KHFA-------------AKEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 933 ~~~~-------------~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
.... ....+++++.+++.+||..||++||++.|+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~ 292 (298)
T 2zv2_A 244 RIMCLHSKIKSQALEFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKL 292 (298)
T ss_dssp SHHHHHHHHHHCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred cHHHHHHHHhcccCCCCCccccCHHHHHHHHHHhhcChhhCCCHHHHhc
Confidence 2111 11235678999999999999999999999875
No 137
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=2.1e-35 Score=319.08 Aligned_cols=239 Identities=20% Similarity=0.310 Sum_probs=204.0
Q ss_pred hcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCc--chHHHHHHHHHHHHhcCCCCeeeEEeeeecC--CceEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCA--STLKSFEAECEVIKNIRHRNLVKIISSCSND--DFKALV 800 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~h~niv~l~~~~~~~--~~~~lv 800 (985)
.++|...+.||+|+||.||+|+++ ++.||||+++.... ...+.+.+|++++++++||||+++++++.+. +..++|
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLI 87 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEE
T ss_pred HHHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEee
Confidence 367888999999999999999985 89999999986532 3356789999999999999999999999887 788999
Q ss_pred EeccCCCChHHHhhcCCC-CCCHHHHHHHHHHHHHHHHHHHhcCCCC--eEeCCCCCCCEEEcCCCcEEEecccCceecc
Q 001988 801 LEYMSNGSLEDCLHSSNC-ALNIFCRLNIMIDIASALEYLHFGHSTP--IIHCDLKPSNVLLDEDMVAHLSDFGMAKLLS 877 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~-~~~~~~~~~i~~~i~~~L~~Lh~~h~~~--ivHrDlk~~Nill~~~~~~kl~DfGla~~~~ 877 (985)
|||+++|+|.+++..... .+++..+..++.|++.||+|| |+++ |+||||||+||+++.++.++++|||++....
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~l---H~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~ 164 (271)
T 3kmu_A 88 THWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFL---HTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQ 164 (271)
T ss_dssp EECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHH---TTSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTS
T ss_pred ecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHH---hcCCCceecCCCccceEEEcCCcceeEEeccceeeec
Confidence 999999999999987643 589999999999999999999 7888 9999999999999999999999999876532
Q ss_pred CCCCcceecccccccccccccccccCccch---hhhcccccccchhhhcccccccCcchhhh-------------hHHHH
Q 001988 878 GEDESTMRTQTLATIGYMAPDEIFVGELSL---KRWVNDLLPVSLVEVVDKSLLSGEEKHFA-------------AKEQC 941 (985)
Q Consensus 878 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~~dv~~~~g~~~~~i~~~~~~~~~~~~~~-------------~~~~~ 941 (985)
. ....||+.|+|||.+.+..++. ++|+ |++|+++++++++..+........ .+..+
T Consensus 165 ~-------~~~~~t~~y~aPE~~~~~~~~~~~~~~Di-~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (271)
T 3kmu_A 165 S-------PGRMYAPAWVAPEALQKKPEDTNRRSADM-WSFAVLLWELVTREVPFADLSNMEIGMKVALEGLRPTIPPGI 236 (271)
T ss_dssp C-------TTCBSCGGGSCHHHHHSCGGGSCHHHHHH-HHHHHHHHHHHHCSCTTTTSCHHHHHHHHHHSCCCCCCCTTC
T ss_pred c-------cCccCCccccChhhhccCCCCCCCchhhH-HHHHHHHHHHHhCCCCccccChHHHHHHHHhcCCCCCCCCCC
Confidence 1 2245899999999988765544 7999 999999999999887665432111 12335
Q ss_pred HHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHh
Q 001988 942 LLSIFSLALECTMESPEKRIDAKDTITRLLKIRD 975 (985)
Q Consensus 942 ~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~ 975 (985)
++++.+++.+||+.||++||++.|+++.|+++.+
T Consensus 237 ~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~ 270 (271)
T 3kmu_A 237 SPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD 270 (271)
T ss_dssp CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence 6789999999999999999999999999998865
No 138
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=7e-36 Score=337.39 Aligned_cols=249 Identities=22% Similarity=0.380 Sum_probs=197.5
Q ss_pred CccCCceeeccCceeEEEEEEc--CC--cEEEEEEeccCC-cchHHHHHHHHHHHHhcCCCCeeeEEeeeec-CCceEEE
Q 001988 727 NFAENNIIGIGGFGSVYRARLE--DG--VEIAIKVFHPQC-ASTLKSFEAECEVIKNIRHRNLVKIISSCSN-DDFKALV 800 (985)
Q Consensus 727 ~~~~~~~ig~G~~g~V~~~~~~--~~--~~vAvK~~~~~~-~~~~~~~~~E~~il~~l~h~niv~l~~~~~~-~~~~~lv 800 (985)
.|...+.||+|+||.||+|+.. ++ ..||+|.++... ....+.+.+|+.++++++||||+++++++.. ++..++|
T Consensus 90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv 169 (373)
T 3c1x_A 90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV 169 (373)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEE
T ss_pred eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEE
Confidence 4667789999999999999864 22 358999987543 3346789999999999999999999998754 5678999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCC
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGED 880 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~ 880 (985)
|||+++|+|.+++......+++..+..++.|+++||+|| |++||+||||||+||+++.++.+||+|||+++.+....
T Consensus 170 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~L---H~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~ 246 (373)
T 3c1x_A 170 LPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE 246 (373)
T ss_dssp EECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHH---HHTTCCCSCCCGGGEEECTTCCEEECCC----------
T ss_pred EECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHH---HHCCEecCccchheEEECCCCCEEEeeccccccccccc
Confidence 999999999999988777789999999999999999999 78899999999999999999999999999998764332
Q ss_pred Ccc--eecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchh------------hhhHHHHHHHH
Q 001988 881 EST--MRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKH------------FAAKEQCLLSI 945 (985)
Q Consensus 881 ~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~------------~~~~~~~~~~l 945 (985)
... ......+|+.|+|||.+.+..++.++|+ |++|++++++++ +..++..... ...++.+++++
T Consensus 247 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv-wSlG~il~ellt~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~l 325 (373)
T 3c1x_A 247 FDSVHNKTGAKLPVKWMALESLQTQKFTTKSDV-WSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPL 325 (373)
T ss_dssp -----------CCGGGSCHHHHHHCCCCHHHHH-HHHHHHHHHHHTTSCCSCTTSCSSCHHHHHHTTCCCCCCTTCCHHH
T ss_pred cccccccCCCCCcccccChHHhcCCCCCcHHHH-HHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHH
Confidence 211 1233457889999999999999999999 999999999998 4444332211 11233467889
Q ss_pred HHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhcc
Q 001988 946 FSLALECTMESPEKRIDAKDTITRLLKIRDTLSK 979 (985)
Q Consensus 946 ~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~~ 979 (985)
.+++.+||..+|++||++.|+++.|+++...+..
T Consensus 326 ~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~~ 359 (373)
T 3c1x_A 326 YEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIG 359 (373)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999887654
No 139
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=1.7e-35 Score=322.92 Aligned_cols=238 Identities=24% Similarity=0.353 Sum_probs=201.6
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcch-------HHHHHHHHHHHHhcCCCCeeeEEeeeecCCc
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCAST-------LKSFEAECEVIKNIRHRNLVKIISSCSNDDF 796 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~-------~~~~~~E~~il~~l~h~niv~l~~~~~~~~~ 796 (985)
.++|...+.||+|+||.||+|+.. +++.||+|++....... .+.+.+|++++++++||||+++++++.+..
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~- 96 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP- 96 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT-
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC-
Confidence 467889999999999999999974 78999999987543221 167899999999999999999999997665
Q ss_pred eEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCC--eEeCCCCCCCEEEcCCCc-----EEEec
Q 001988 797 KALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTP--IIHCDLKPSNVLLDEDMV-----AHLSD 869 (985)
Q Consensus 797 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~--ivHrDlk~~Nill~~~~~-----~kl~D 869 (985)
++||||+++|+|.+++......+++..+..++.|++.||+|| |++| |+||||||+||+++.++. +||+|
T Consensus 97 -~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~l---H~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~D 172 (287)
T 4f0f_A 97 -RMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYM---QNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVAD 172 (287)
T ss_dssp -EEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHH---HTSSSCCBCSCCSGGGEEESCCCTTCSCCEEECC
T ss_pred -eEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHH---HhCCCCeecCCCCcceEEEeccCCCCceeEEeCC
Confidence 699999999999999988777899999999999999999999 6788 999999999999988776 99999
Q ss_pred ccCceeccCCCCcceeccccccccccccccc--ccCccchhhhcccccccchhhhcccccccCcchhh------------
Q 001988 870 FGMAKLLSGEDESTMRTQTLATIGYMAPDEI--FVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF------------ 935 (985)
Q Consensus 870 fGla~~~~~~~~~~~~~~~~gt~~y~aPE~~--~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~------------ 935 (985)
||+++.... ......||+.|+|||.+ ....++.++|+ |++|+++++++++..++......
T Consensus 173 fg~~~~~~~-----~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di-~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~ 246 (287)
T 4f0f_A 173 FGLSQQSVH-----SVSGLLGNFQWMAPETIGAEEESYTEKADT-YSFAMILYTILTGEGPFDEYSYGKIKFINMIREEG 246 (287)
T ss_dssp CTTCBCCSS-----CEECCCCCCTTSCGGGSSCSSCEECHHHHH-HHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSC
T ss_pred CCccccccc-----cccccCCCccccCchhhccCCCCcCchhhH-HHHHHHHHHHHcCCCCCccccccHHHHHHHHhccC
Confidence 999975432 23345699999999998 45567889999 99999999999988766432211
Q ss_pred ---hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 001988 936 ---AAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKI 973 (985)
Q Consensus 936 ---~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i 973 (985)
..+..+++++.+++.+||..||.+||++.|+++.|+++
T Consensus 247 ~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 247 LRPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred CCCCCCcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence 11234667899999999999999999999999999864
No 140
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.7e-35 Score=320.15 Aligned_cols=247 Identities=23% Similarity=0.345 Sum_probs=207.8
Q ss_pred cCccCCc-eeeccCceeEEEEEEc---CCcEEEEEEeccCCc-chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEE
Q 001988 726 DNFAENN-IIGIGGFGSVYRARLE---DGVEIAIKVFHPQCA-STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 726 ~~~~~~~-~ig~G~~g~V~~~~~~---~~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv 800 (985)
++|...+ .||+|+||.||+|.+. +++.||||+++.... ...+.+.+|++++++++||||+++++++. .+..++|
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~lv 87 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQ-AEALMLV 87 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSSEEEE
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEec-CCCcEEE
Confidence 4566665 8999999999999853 678899999986532 34567899999999999999999999994 5568999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCC
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGED 880 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~ 880 (985)
|||+++++|.+++......+++..+..++.|++.||+|| |+.||+||||||+||+++.++.+||+|||+++......
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~l---H~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~ 164 (287)
T 1u59_A 88 MEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYL---EEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADD 164 (287)
T ss_dssp EECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHH---HHTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCS
T ss_pred EEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHH---HHCCEeeCCCchheEEEcCCCCEEECcccceeeeccCc
Confidence 999999999999987766799999999999999999999 78899999999999999999999999999998875333
Q ss_pred Ccc-eecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhh------------hhHHHHHHHHH
Q 001988 881 EST-MRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHF------------AAKEQCLLSIF 946 (985)
Q Consensus 881 ~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~------------~~~~~~~~~l~ 946 (985)
... ......+|+.|+|||.+.+..++.++|+ |++|++++++++ +..+....... ..+..+++++.
T Consensus 165 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~ellt~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~ 243 (287)
T 1u59_A 165 SYYTARSAGKWPLKWYAPECINFRKFSSRSDV-WSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELY 243 (287)
T ss_dssp CEECCCCSSCCCGGGCCHHHHHHCEECHHHHH-HHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTTCCCCCCTTCCHHHH
T ss_pred ceeeccccccccccccCHHHhccCCCCchhhH-HHHHHHHHHHHcCCCCCcccCCHHHHHHHHhcCCcCCCCCCcCHHHH
Confidence 221 1233357899999999998999999999 999999999998 77655432211 11234678899
Q ss_pred HHHHHccCCCCCCCCCHHHHHHHHHHhHhhh
Q 001988 947 SLALECTMESPEKRIDAKDTITRLLKIRDTL 977 (985)
Q Consensus 947 ~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~ 977 (985)
+++.+||..+|.+||++.|+++.|+++....
T Consensus 244 ~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~ 274 (287)
T 1u59_A 244 ALMSDCWIYKWEDRPDFLTVEQRMRACYYSL 274 (287)
T ss_dssp HHHHHTTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCChhhCcCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999987643
No 141
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=2.5e-35 Score=325.82 Aligned_cols=252 Identities=22% Similarity=0.356 Sum_probs=197.9
Q ss_pred HHhcCccCCceeeccCceeEEEEEEc----CCcEEEEEEeccCCc--chHHHHHHHHHHHHhcCCCCeeeEEeeeecCC-
Q 001988 723 RATDNFAENNIIGIGGFGSVYRARLE----DGVEIAIKVFHPQCA--STLKSFEAECEVIKNIRHRNLVKIISSCSNDD- 795 (985)
Q Consensus 723 ~~~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~- 795 (985)
...++|...+.||+|+||.||+|... +++.||+|+++.... ...+.+.+|++++++++||||+++++++.+.+
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~ 110 (313)
T 3brb_A 31 IDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSS 110 (313)
T ss_dssp CCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC---
T ss_pred cCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeeccc
Confidence 34578899999999999999999754 355899999876532 33567899999999999999999999997754
Q ss_pred ----ceEEEEeccCCCChHHHhhc-----CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEE
Q 001988 796 ----FKALVLEYMSNGSLEDCLHS-----SNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAH 866 (985)
Q Consensus 796 ----~~~lv~e~~~~gsL~~~l~~-----~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~k 866 (985)
..++||||+++|+|.+++.. ....+++..++.++.|+++||+|| |++||+||||||+||+++.++.+|
T Consensus 111 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~L---H~~~ivH~dikp~NIli~~~~~~k 187 (313)
T 3brb_A 111 QGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYL---SNRNFLHRDLAARNCMLRDDMTVC 187 (313)
T ss_dssp ----CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHH---HTTTCCCCCCSGGGEEECTTSCEE
T ss_pred cCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHH---HhCCcccCCCCcceEEEcCCCcEE
Confidence 34899999999999999853 235689999999999999999999 789999999999999999999999
Q ss_pred EecccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhh----------
Q 001988 867 LSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHF---------- 935 (985)
Q Consensus 867 l~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~---------- 935 (985)
|+|||+++.+.............+++.|+|||.+.+..++.++|+ |++|++++++++ +..+.......
T Consensus 188 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~ 266 (313)
T 3brb_A 188 VADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDV-WAFGVTMWEIATRGMTPYPGVQNHEMYDYLLHGH 266 (313)
T ss_dssp ECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHH-HHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTTC
T ss_pred EeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhh-HHHHHHHHHHHhcCCCCCccCCHHHHHHHHHcCC
Confidence 999999987654332233334457889999999999999999999 999999999998 66544332111
Q ss_pred --hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhc
Q 001988 936 --AAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLS 978 (985)
Q Consensus 936 --~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~ 978 (985)
..+..+++++.+++.+||..+|.+||++.++++.|+++.+.++
T Consensus 267 ~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~lp 311 (313)
T 3brb_A 267 RLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESLP 311 (313)
T ss_dssp CCCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC-
T ss_pred CCCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcC
Confidence 1223456789999999999999999999999999999987654
No 142
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.3e-35 Score=334.50 Aligned_cols=336 Identities=21% Similarity=0.239 Sum_probs=245.2
Q ss_pred CCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccEEEccCcccccccCCcccCCCCCce
Q 001988 264 NMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMGSNSFSGFIPSAIGNLRNLKL 343 (985)
Q Consensus 264 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 343 (985)
.+++++.|++++|.++ .+|..++..+++|++|+|++|++++..+..|..+++|++|++++|.+++..|..++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 4578888888888887 678777778888888888888888777778888888888888888888777777788888888
Q ss_pred EeccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhcccceeccccccccccCCcCCCCCCccEEE
Q 001988 344 FDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLS 423 (985)
Q Consensus 344 L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 423 (985)
|++++|+++.+++. .+.++++|++|++++|++. +..|..|..+++|++|+
T Consensus 122 L~L~~n~l~~l~~~-----~~~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~~l~~L~~L~ 171 (390)
T 3o6n_A 122 LVLERNDLSSLPRG-----IFHNTPKLTTLSMSNNNLE-------------------------RIEDDTFQATTSLQNLQ 171 (390)
T ss_dssp EECCSSCCCCCCTT-----TTTTCTTCCEEECCSSCCC-------------------------BCCTTTTSSCTTCCEEE
T ss_pred EECCCCccCcCCHH-----HhcCCCCCcEEECCCCccC-------------------------ccChhhccCCCCCCEEE
Confidence 87777777765543 1345555555555555554 44455566666666666
Q ss_pred ccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCceEeeccceeee
Q 001988 424 LGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTF 503 (985)
Q Consensus 424 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 503 (985)
+++|++++. .+..+++|+.|++++|.+++. ...++|+.|++++|+++..... ..++|++|++++|++++
T Consensus 172 l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~ 240 (390)
T 3o6n_A 172 LSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD 240 (390)
T ss_dssp CCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCC
T ss_pred CCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCcc
Confidence 666666643 244556667777777766532 2335677777777777654322 23677777888877775
Q ss_pred ecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhc
Q 001988 504 VIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGN 583 (985)
Q Consensus 504 ~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 583 (985)
. ..+..+++|++|++++|.+++..+..+..+++|+.|+|++|++++ +|..+..+++|++|+|++|+++ .+|..+..
T Consensus 241 ~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~ 316 (390)
T 3o6n_A 241 T--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ 316 (390)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHH
T ss_pred c--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccc
Confidence 4 467777788888888888887777788888888888888888875 5666778899999999999998 46777888
Q ss_pred ccccCeEecCCCcccCCCCccccccccccccccccccccCCCCCCCCCcccccccccCCccccCCC
Q 001988 584 MTSLESLDLSNNKISGSIPVSFEKLSYLKELNLSFNKLKGEIPRGGPFANFTAESFMGNELLCGLP 649 (985)
Q Consensus 584 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 649 (985)
+++|++|+|++|+|++. | +..+++|+.|++++|++++.... ..+..+....+.+++..|..+
T Consensus 317 l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 317 FDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp HTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred cCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence 99999999999999854 3 67788999999999999875432 234445555566777777754
No 143
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.9e-35 Score=328.05 Aligned_cols=249 Identities=23% Similarity=0.405 Sum_probs=201.9
Q ss_pred cCccCCceeeccCceeEEEEEEcC-----CcEEEEEEeccCCc-chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEE
Q 001988 726 DNFAENNIIGIGGFGSVYRARLED-----GVEIAIKVFHPQCA-STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKAL 799 (985)
Q Consensus 726 ~~~~~~~~ig~G~~g~V~~~~~~~-----~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~l 799 (985)
++|...+.||+|+||.||+|.... +..||||+++.... .....+.+|++++++++||||+++++++.+.+..++
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 123 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI 123 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEE
Confidence 467778999999999999998642 34699999976533 235578899999999999999999999999999999
Q ss_pred EEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCC
Q 001988 800 VLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGE 879 (985)
Q Consensus 800 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~ 879 (985)
||||+++|+|.+++......+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++.....
T Consensus 124 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~L---H~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~ 200 (333)
T 1mqb_A 124 ITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYL---ANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDD 200 (333)
T ss_dssp EEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCCGGGEEECTTCCEEECCCCC-------
T ss_pred EEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH---HhCCeeCCCCChheEEECCCCcEEECCCCcchhhccc
Confidence 9999999999999988766899999999999999999999 7889999999999999999999999999999876533
Q ss_pred CCcc-eecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhh------------hhHHHHHHHH
Q 001988 880 DEST-MRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHF------------AAKEQCLLSI 945 (985)
Q Consensus 880 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~------------~~~~~~~~~l 945 (985)
.... ......+|+.|+|||.+....++.++|+ |++|++++++++ +..+....... +.+..++.++
T Consensus 201 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~l 279 (333)
T 1mqb_A 201 PEATYTTSGGKIPIRWTAPEAISYRKFTSASDV-WSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSAI 279 (333)
T ss_dssp ----------CCCGGGSCHHHHHSCCCCHHHHH-HHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTCBHHH
T ss_pred cccccccCCCCccccccCchhcccCCCCchhhh-HHHHHHHHHHHcCCCCCcccCCHHHHHHHHHCCCcCCCcccCCHHH
Confidence 2211 1223346889999999999999999999 999999999987 66554322111 1123356789
Q ss_pred HHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhc
Q 001988 946 FSLALECTMESPEKRIDAKDTITRLLKIRDTLS 978 (985)
Q Consensus 946 ~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~ 978 (985)
.+++.+||..+|.+||++.++++.|+++.+...
T Consensus 280 ~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~~ 312 (333)
T 1mqb_A 280 YQLMMQCWQQERARRPKFADIVSILDKLIRAPD 312 (333)
T ss_dssp HHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHHHHhcch
Confidence 999999999999999999999999999876543
No 144
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=1.7e-35 Score=319.90 Aligned_cols=238 Identities=26% Similarity=0.407 Sum_probs=192.5
Q ss_pred hcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCc----chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCA----STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~----~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv 800 (985)
.++|+..+.||+|+||.||+|.+. ++.||||+++.... ...+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLV 84 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEE
T ss_pred hhheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEE
Confidence 367888999999999999999985 89999999875432 2246789999999999999999999999999999999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCC---eEeCCCCCCCEEEcC--------CCcEEEec
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTP---IIHCDLKPSNVLLDE--------DMVAHLSD 869 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~---ivHrDlk~~Nill~~--------~~~~kl~D 869 (985)
|||+++++|.+++... .+++..+..++.|+++||+|| |++| |+||||||+||+++. ++.+||+|
T Consensus 85 ~e~~~~~~L~~~~~~~--~~~~~~~~~i~~~l~~~l~~l---H~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~D 159 (271)
T 3dtc_A 85 MEFARGGPLNRVLSGK--RIPPDILVNWAVQIARGMNYL---HDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITD 159 (271)
T ss_dssp EECCTTEEHHHHHTSS--CCCHHHHHHHHHHHHHHHHHH---HHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECC
T ss_pred EEcCCCCCHHHHhhcC--CCCHHHHHHHHHHHHHHHHHH---HhCCCCceeecCCchHHEEEecccccccccCcceEEcc
Confidence 9999999999998643 689999999999999999999 5666 999999999999986 77899999
Q ss_pred ccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh-------------
Q 001988 870 FGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA------------- 936 (985)
Q Consensus 870 fGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~------------- 936 (985)
||+++.+.... .....||+.|+|||.+.+..++.++|+ |++|+++++++++..+........
T Consensus 160 fg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~ 234 (271)
T 3dtc_A 160 FGLAREWHRTT----KMSAAGAYAWMAPEVIRASMFSKGSDV-WSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNKLALP 234 (271)
T ss_dssp CCC-----------------CCGGGSCHHHHHHCCCSHHHHH-HHHHHHHHHHHHCCCTTTTSCHHHHHHHHHTSCCCCC
T ss_pred CCccccccccc----ccCCCCccceeCHHHhccCCCCchhhH-HHHHHHHHHHHhCCCCCCCCCHHHHHHhhhcCCCCCC
Confidence 99998764322 223469999999999999999999999 999999999999887655432111
Q ss_pred hHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHh
Q 001988 937 AKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKI 973 (985)
Q Consensus 937 ~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i 973 (985)
.+..+++++.+++.+||+.+|.+||++.|+++.|+++
T Consensus 235 ~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 235 IPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred CCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence 1234567899999999999999999999999999764
No 145
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=1.4e-35 Score=335.01 Aligned_cols=251 Identities=17% Similarity=0.188 Sum_probs=203.3
Q ss_pred HhcCccCCceeeccCceeEEEEEEcC------CcEEEEEEeccCCcchH-----------HHHHHHHHHHHhcCCCCeee
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLED------GVEIAIKVFHPQCASTL-----------KSFEAECEVIKNIRHRNLVK 786 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~~------~~~vAvK~~~~~~~~~~-----------~~~~~E~~il~~l~h~niv~ 786 (985)
..++|...+.||+|+||.||+|.+.+ ++.||||++........ ..+..|+..++.++||||++
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 35689999999999999999998764 47899999876532111 12334555666778999999
Q ss_pred EEeeeecC----CceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEc--
Q 001988 787 IISSCSND----DFKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLD-- 860 (985)
Q Consensus 787 l~~~~~~~----~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~-- 860 (985)
+++++... ...++||||+ +++|.+++......+++..+..++.|++.||+|| |++||+||||||+|||++
T Consensus 113 ~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~l---H~~~iiHrDlkp~Nill~~~ 188 (364)
T 3op5_A 113 YWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYI---HEHEYVHGDIKASNLLLNYK 188 (364)
T ss_dssp EEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCCGGGEEEESS
T ss_pred EEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH---HHCCeEEecCCHHHEEEecC
Confidence 99998764 4579999999 9999999988767899999999999999999999 788999999999999999
Q ss_pred CCCcEEEecccCceeccCCCCcc-----eecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh
Q 001988 861 EDMVAHLSDFGMAKLLSGEDEST-----MRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF 935 (985)
Q Consensus 861 ~~~~~kl~DfGla~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~ 935 (985)
.++.+||+|||+++.+....... ......||+.|+|||.+.+..++.++|+ |++|+++++++++..++......
T Consensus 189 ~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di-~slG~~l~el~~g~~Pf~~~~~~ 267 (364)
T 3op5_A 189 NPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDL-EILGYCMIQWLTGHLPWEDNLKD 267 (364)
T ss_dssp CTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHH-HHHHHHHHHHHHSCCTTGGGTTC
T ss_pred CCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhH-HHHHHHHHHHHhCCCCccccccC
Confidence 88999999999998865322111 1133459999999999999999999999 99999999999998876532110
Q ss_pred h----------------hH------HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhcc
Q 001988 936 A----------------AK------EQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLSK 979 (985)
Q Consensus 936 ~----------------~~------~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~~ 979 (985)
. .. ..+++++.+++..||..+|.+||++.++++.|+++.+....
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~~~~ 333 (364)
T 3op5_A 268 PKYVRDSKIRYRENIASLMDKCFPAANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGS 333 (364)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHSCTTCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhhHHHHHHHhcccccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 0 01 11267899999999999999999999999999998876543
No 146
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=8.8e-36 Score=339.38 Aligned_cols=244 Identities=19% Similarity=0.222 Sum_probs=205.0
Q ss_pred HHHHHHhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC---cchHHHHHHHHHHHHhcCCCCeeeEEeeeecC
Q 001988 719 FELLRATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC---ASTLKSFEAECEVIKNIRHRNLVKIISSCSND 794 (985)
Q Consensus 719 ~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~---~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~ 794 (985)
.++....++|...+.||+|+||.||+|+.+ +++.||+|++++.. ......+.+|+++++.++||||+++++++.+.
T Consensus 62 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~ 141 (410)
T 3v8s_A 62 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDD 141 (410)
T ss_dssp HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred HhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEEC
Confidence 344456789999999999999999999976 68899999986531 12234578999999999999999999999999
Q ss_pred CceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCce
Q 001988 795 DFKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAK 874 (985)
Q Consensus 795 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~ 874 (985)
+..|+||||++||+|.+++... .+++.....++.||+.||+|| |++||+||||||+|||++.+|.+||+|||+|+
T Consensus 142 ~~~~lV~E~~~gg~L~~~l~~~--~~~e~~~~~~~~qi~~aL~~L---H~~givHrDLKp~NILl~~~g~ikL~DFG~a~ 216 (410)
T 3v8s_A 142 RYLYMVMEYMPGGDLVNLMSNY--DVPEKWARFYTAEVVLALDAI---HSMGFIHRDVKPDNMLLDKSGHLKLADFGTCM 216 (410)
T ss_dssp SEEEEEECCCTTEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred CEEEEEEeCCCCCcHHHHHHcC--CCCHHHHHHHHHHHHHHHHHH---HHCCeEeccCCHHHeeECCCCCEEEeccceeE
Confidence 9999999999999999999764 588999999999999999999 78999999999999999999999999999998
Q ss_pred eccCCCCcceecccccccccccccccccCc----cchhhhcccccccchhhhcccccccCcchhhh--------------
Q 001988 875 LLSGEDESTMRTQTLATIGYMAPDEIFVGE----LSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA-------------- 936 (985)
Q Consensus 875 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~-------------- 936 (985)
.+.... .......+||+.|+|||++.... ++.++|+ |++|++++++++|..++.......
T Consensus 217 ~~~~~~-~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~Di-wSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~ 294 (410)
T 3v8s_A 217 KMNKEG-MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDW-WSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTF 294 (410)
T ss_dssp ECCTTS-EEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHH-HHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCC
T ss_pred eeccCC-cccccCCcCCccccCHHHhhccCCCcCCCCcceE-ecchHHHHHHHhCCCCCCCCChhhHHHHHHhccccccC
Confidence 864322 22334568999999999988665 7889999 999999999999987765432111
Q ss_pred -hHHHHHHHHHHHHHHccCCCCCC--CCCHHHHHHH
Q 001988 937 -AKEQCLLSIFSLALECTMESPEK--RIDAKDTITR 969 (985)
Q Consensus 937 -~~~~~~~~l~~l~~~cl~~~P~~--RPt~~ev~~~ 969 (985)
.....+.++.+++.+|+..+|.+ ||++.|+++.
T Consensus 295 p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~H 330 (410)
T 3v8s_A 295 PDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRH 330 (410)
T ss_dssp CTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTS
T ss_pred CCcccccHHHHHHHHHHccChhhhCCCCCHHHHhcC
Confidence 11124678999999999999988 9999998863
No 147
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=6.4e-35 Score=326.20 Aligned_cols=252 Identities=23% Similarity=0.329 Sum_probs=200.9
Q ss_pred HHHHhcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhc--CCCCeeeEEeeeecC----
Q 001988 721 LLRATDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNI--RHRNLVKIISSCSND---- 794 (985)
Q Consensus 721 ~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l--~h~niv~l~~~~~~~---- 794 (985)
.....++|+..+.||+|+||.||+|+.. ++.||||++... ....+.+|.+++... +||||+++++++...
T Consensus 32 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~ 107 (337)
T 3mdy_A 32 QRTIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT---EEASWFRETEIYQTVLMRHENILGFIAADIKGTGSW 107 (337)
T ss_dssp HTTHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGG
T ss_pred ccccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc---ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCC
Confidence 3345578999999999999999999986 899999998643 234555666666655 899999999999877
Q ss_pred CceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhc-----CCCCeEeCCCCCCCEEEcCCCcEEEec
Q 001988 795 DFKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFG-----HSTPIIHCDLKPSNVLLDEDMVAHLSD 869 (985)
Q Consensus 795 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~-----h~~~ivHrDlk~~Nill~~~~~~kl~D 869 (985)
...++||||+++|+|.++++.. .+++..+..++.|++.||+|||.. |..||+||||||+||+++.++.+||+|
T Consensus 108 ~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~D 185 (337)
T 3mdy_A 108 TQLYLITDYHENGSLYDYLKST--TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIAD 185 (337)
T ss_dssp CEEEEEECCCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECC
T ss_pred CceEEEEeccCCCcHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEe
Confidence 6789999999999999999765 589999999999999999999421 133999999999999999999999999
Q ss_pred ccCceeccCCCCcc--eecccccccccccccccccCccchh------hhcccccccchhhhccccccc----------Cc
Q 001988 870 FGMAKLLSGEDEST--MRTQTLATIGYMAPDEIFVGELSLK------RWVNDLLPVSLVEVVDKSLLS----------GE 931 (985)
Q Consensus 870 fGla~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~------~dv~~~~g~~~~~i~~~~~~~----------~~ 931 (985)
||+++.+....... ......||+.|+|||.+.+...... +|+ |++|+++++++++..+. ..
T Consensus 186 fg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di-wslG~il~el~tg~~~~~~~~~~~~p~~~ 264 (337)
T 3mdy_A 186 LGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADM-YSFGLILWEVARRCVSGGIVEEYQLPYHD 264 (337)
T ss_dssp CTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHH-HHHHHHHHHHHTTBCBTTBCCCCCCTTTT
T ss_pred CCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccch-HHHHHHHHHHHhccCcccccccccccHhh
Confidence 99998765333221 1224579999999999877666554 899 99999999999983322 11
Q ss_pred c----h-------------------hhhhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhcc
Q 001988 932 E----K-------------------HFAAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLSK 979 (985)
Q Consensus 932 ~----~-------------------~~~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~~ 979 (985)
. . .....+.+++++.+++.+||..||.+||++.|+++.|+++.+....
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~~ 335 (337)
T 3mdy_A 265 LVPSDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQDI 335 (337)
T ss_dssp TSCSSCCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHTTTC
T ss_pred hcCCCCchhhhHHHHhhhccCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhhccc
Confidence 0 0 0001236788899999999999999999999999999999887543
No 148
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.4e-36 Score=339.77 Aligned_cols=245 Identities=22% Similarity=0.244 Sum_probs=204.9
Q ss_pred HHHHHHHhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC---cchHHHHHHHHHHHHhcCCCCeeeEEeeeec
Q 001988 718 YFELLRATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC---ASTLKSFEAECEVIKNIRHRNLVKIISSCSN 793 (985)
Q Consensus 718 ~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~---~~~~~~~~~E~~il~~l~h~niv~l~~~~~~ 793 (985)
+.+.....++|+..+.||+|+||.||+|+.+ +++.||+|++++.. ......+.+|.+++.+++||||+++++++++
T Consensus 53 ~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~ 132 (412)
T 2vd5_A 53 LKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQD 132 (412)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred hhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEee
Confidence 3444556789999999999999999999975 79999999997532 1223457899999999999999999999999
Q ss_pred CCceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCc
Q 001988 794 DDFKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMA 873 (985)
Q Consensus 794 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla 873 (985)
.+..|+||||++||+|.+++...+..+++..+..++.||+.||+|| |++||+||||||+|||++.++++||+|||++
T Consensus 133 ~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~L---H~~giiHrDLKp~NILld~~g~vkL~DFGla 209 (412)
T 2vd5_A 133 ENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSV---HRLGYVHRDIKPDNILLDRCGHIRLADFGSC 209 (412)
T ss_dssp SSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred CCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH---HHCCeeecccCHHHeeecCCCCEEEeechhh
Confidence 9999999999999999999987666789999999999999999999 7899999999999999999999999999999
Q ss_pred eeccCCCCcceecccccccccccccccc-------cCccchhhhcccccccchhhhcccccccCcchhhh----------
Q 001988 874 KLLSGEDESTMRTQTLATIGYMAPDEIF-------VGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA---------- 936 (985)
Q Consensus 874 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~---------- 936 (985)
+.+..... ......+||+.|+|||++. .+.++.++|+ |++|++++|+++|+.++.......
T Consensus 210 ~~~~~~~~-~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~Di-wSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~ 287 (412)
T 2vd5_A 210 LKLRADGT-VRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDW-WALGVFAYEMFYGQTPFYADSTAETYGKIVHYKE 287 (412)
T ss_dssp EECCTTSC-EECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHH-HHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHH
T ss_pred eeccCCCc-cccceeccccCcCCHHHHhhcccCcCCCCCChHHhh-hHHhHHHHHHHhCCCCCCCCCHHHHHHHHHhccc
Confidence 88753322 2233467999999999987 4678999999 999999999999987664332111
Q ss_pred ------hHHHHHHHHHHHHHHccCCCCCCC---CCHHHHHH
Q 001988 937 ------AKEQCLLSIFSLALECTMESPEKR---IDAKDTIT 968 (985)
Q Consensus 937 ------~~~~~~~~l~~l~~~cl~~~P~~R---Pt~~ev~~ 968 (985)
....+++++.+++++|+. +|.+| |++.|+.+
T Consensus 288 ~~~~p~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~ 327 (412)
T 2vd5_A 288 HLSLPLVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRT 327 (412)
T ss_dssp HCCCC----CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred CcCCCccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence 012356789999999998 99998 58888764
No 149
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=1.3e-35 Score=331.64 Aligned_cols=232 Identities=23% Similarity=0.237 Sum_probs=197.2
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc---chHHHHHHHHHHHHhc-CCCCeeeEEeeeecCCceEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA---STLKSFEAECEVIKNI-RHRNLVKIISSCSNDDFKAL 799 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~---~~~~~~~~E~~il~~l-~h~niv~l~~~~~~~~~~~l 799 (985)
.++|...+.||+|+||.||+|+.+ +++.||+|++++... ...+.+.+|..+++++ +||||+++++++.+.+..++
T Consensus 8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l 87 (345)
T 3a8x_A 8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 87 (345)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEE
Confidence 367889999999999999999975 688999999976532 2345678999999988 89999999999999999999
Q ss_pred EEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCC
Q 001988 800 VLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGE 879 (985)
Q Consensus 800 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~ 879 (985)
||||+++|+|.+++...+ .+++..+..++.||+.||+|| |++||+||||||+||+++.++.+||+|||+++.....
T Consensus 88 v~e~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~L---H~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~ 163 (345)
T 3a8x_A 88 VIEYVNGGDLMFHMQRQR-KLPEEHARFYSAEISLALNYL---HERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP 163 (345)
T ss_dssp EECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHH---HHTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCT
T ss_pred EEeCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH---HHCCceecCCCHHHEEECCCCCEEEEeccccccccCC
Confidence 999999999999998654 689999999999999999999 7899999999999999999999999999999864322
Q ss_pred CCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchh---------h-----------hhHH
Q 001988 880 DESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKH---------F-----------AAKE 939 (985)
Q Consensus 880 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~---------~-----------~~~~ 939 (985)
. ......+||+.|+|||.+.+..++.++|+ |++|+++++++++..++..... . ..+.
T Consensus 164 ~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Di-wslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~ 240 (345)
T 3a8x_A 164 G--DTTSTFCGTPNYIAPEILRGEDYGFSVDW-WALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPR 240 (345)
T ss_dssp T--CCBCCCCSCGGGCCHHHHTTCCBCTHHHH-HHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCCCCCT
T ss_pred C--CcccccCCCccccCccccCCCCCChHHhH-HHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCCCCCC
Confidence 2 22345679999999999999999999999 9999999999999876642100 0 0112
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCH
Q 001988 940 QCLLSIFSLALECTMESPEKRIDA 963 (985)
Q Consensus 940 ~~~~~l~~l~~~cl~~~P~~RPt~ 963 (985)
..+.++.+++.+||..||.+||++
T Consensus 241 ~~s~~~~~li~~lL~~dP~~R~~~ 264 (345)
T 3a8x_A 241 SLSVKAASVLKSFLNKDPKERLGC 264 (345)
T ss_dssp TSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred CCCHHHHHHHHHHhcCCHhHCCCC
Confidence 245778999999999999999996
No 150
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=333.30 Aligned_cols=235 Identities=24% Similarity=0.298 Sum_probs=199.4
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC---cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC---ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~---~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv 800 (985)
.++|...+.||+|+||.||+|+.. +++.||+|++.+.. ......+.+|++++++++|||||++++++.+.+..++|
T Consensus 14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv 93 (384)
T 4fr4_A 14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMV 93 (384)
T ss_dssp GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 367899999999999999999865 68899999987542 22346788999999999999999999999999999999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCC
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGED 880 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~ 880 (985)
|||++||+|.+++.... .+++..+..++.|++.||+|| |+.||+||||||+||+++.+|.+||+|||+++.+...
T Consensus 94 ~e~~~gg~L~~~l~~~~-~l~~~~~~~~~~qi~~aL~~L---H~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~- 168 (384)
T 4fr4_A 94 VDLLLGGDLRYHLQQNV-HFKEETVKLFICELVMALDYL---QNQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRE- 168 (384)
T ss_dssp ECCCTTEEHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTT-
T ss_pred EecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HHCCceeccCcHHHeEECCCCCEEEeccceeeeccCC-
Confidence 99999999999998753 689999999999999999999 7899999999999999999999999999999886432
Q ss_pred Ccceeccccccccccccccccc---CccchhhhcccccccchhhhcccccccCcchhhh--------------hHHHHHH
Q 001988 881 ESTMRTQTLATIGYMAPDEIFV---GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA--------------AKEQCLL 943 (985)
Q Consensus 881 ~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~--------------~~~~~~~ 943 (985)
......+||+.|+|||.+.. ..++.++|+ |++|++++++++|..++....... .+..++.
T Consensus 169 --~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~Di-wSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~p~~~s~ 245 (384)
T 4fr4_A 169 --TQITTMAGTKPYMAPEMFSSRKGAGYSFAVDW-WSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFETTVVTYPSAWSQ 245 (384)
T ss_dssp --CCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHH-HHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHHHCCCCCCTTSCH
T ss_pred --CceeccCCCccccCCeeeccCCCCCCCcccee-echHHHHHHHHhCCCCCCCCCCccHHHHHHHHhhcccCCCCcCCH
Confidence 22345679999999999864 458889999 999999999999987764321111 1223457
Q ss_pred HHHHHHHHccCCCCCCCCC-HHHHH
Q 001988 944 SIFSLALECTMESPEKRID-AKDTI 967 (985)
Q Consensus 944 ~l~~l~~~cl~~~P~~RPt-~~ev~ 967 (985)
++.+++.+||..||.+||+ +.++.
T Consensus 246 ~~~~li~~lL~~dP~~R~s~~~~l~ 270 (384)
T 4fr4_A 246 EMVSLLKKLLEPNPDQRFSQLSDVQ 270 (384)
T ss_dssp HHHHHHHHHSCSSGGGSCCSHHHHH
T ss_pred HHHHHHHHHhcCCHhHhcccHHHHH
Confidence 8999999999999999998 55554
No 151
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=3.1e-35 Score=319.75 Aligned_cols=247 Identities=22% Similarity=0.372 Sum_probs=204.6
Q ss_pred HhcCccCCceeeccCceeEEEEEEcC----CcEEEEEEeccCC-cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceE
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLED----GVEIAIKVFHPQC-ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKA 798 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~~----~~~vAvK~~~~~~-~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~ 798 (985)
..++|...+.||+|+||.||+|++.+ +..||+|.+.... ....+.+.+|++++++++||||+++++++.++ ..+
T Consensus 10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-~~~ 88 (281)
T 3cc6_A 10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEE-PTW 88 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSS-SCE
T ss_pred cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCC-CCE
Confidence 35688999999999999999998542 3469999998653 23457789999999999999999999998754 568
Q ss_pred EEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccC
Q 001988 799 LVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSG 878 (985)
Q Consensus 799 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~ 878 (985)
+||||+++++|.+++......+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++....
T Consensus 89 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~l---H~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 165 (281)
T 3cc6_A 89 IIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYL---ESINCVHRDIAVRNILVASPECVKLGDFGLSRYIED 165 (281)
T ss_dssp EEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH---HHTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC--
T ss_pred EEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHH---HHCCcccCCCccceEEECCCCcEEeCccCCCccccc
Confidence 99999999999999987766789999999999999999999 789999999999999999999999999999987643
Q ss_pred CCCcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhh------------hhHHHHHHHH
Q 001988 879 EDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHF------------AAKEQCLLSI 945 (985)
Q Consensus 879 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~------------~~~~~~~~~l 945 (985)
... .......+|+.|+|||.+....++.++|+ |++|++++++++ +..+....... ..+..+++.+
T Consensus 166 ~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~~llt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (281)
T 3cc6_A 166 EDY-YKASVTRLPIKWMSPESINFRRFTTASDV-WMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGDRLPKPDLCPPVL 243 (281)
T ss_dssp --------CCCCCGGGCCHHHHHHCCCCHHHHH-HHHHHHHHHHHTTTCCTTTTSCGGGHHHHHHHTCCCCCCTTCCHHH
T ss_pred ccc-cccccCCCCcceeCchhhccCCCCchhcc-HHHHHHHHHHHhCCCCCcccCChHHHHHHHhcCCCCCCCCCCCHHH
Confidence 222 12233457889999999999999999999 999999999997 77654322111 1122356779
Q ss_pred HHHHHHccCCCCCCCCCHHHHHHHHHHhHhh
Q 001988 946 FSLALECTMESPEKRIDAKDTITRLLKIRDT 976 (985)
Q Consensus 946 ~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~ 976 (985)
.+++.+||..+|++||++.|+++.|+++.+.
T Consensus 244 ~~li~~~l~~~p~~Rps~~ell~~L~~~~~~ 274 (281)
T 3cc6_A 244 YTLMTRCWDYDPSDRPRFTELVCSLSDVYQM 274 (281)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCchhCcCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998764
No 152
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=2.6e-35 Score=327.42 Aligned_cols=237 Identities=24% Similarity=0.293 Sum_probs=192.4
Q ss_pred hcCccCCceeeccCceeEEEEEE----cCCcEEEEEEeccCC----cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCc
Q 001988 725 TDNFAENNIIGIGGFGSVYRARL----EDGVEIAIKVFHPQC----ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDF 796 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~----~~~~~vAvK~~~~~~----~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~ 796 (985)
.++|+..+.||+|+||.||+|+. .+++.||+|++++.. ......+.+|++++++++||||+++++++...+.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 95 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK 95 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence 46799999999999999999987 478999999997652 2234567899999999999999999999999999
Q ss_pred eEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceec
Q 001988 797 KALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLL 876 (985)
Q Consensus 797 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~ 876 (985)
.++||||+++|+|.+++...+ .+++.....++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++..
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~al~~l---H~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~ 171 (327)
T 3a62_A 96 LYLILEYLSGGELFMQLEREG-IFMEDTACFYLAEISMALGHL---HQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKES 171 (327)
T ss_dssp EEEEEECCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHH---HHTTCCCCCCCTTTEEECTTSCEEECCCSCC---
T ss_pred EEEEEeCCCCCcHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHH---HhCCEEcccCCHHHeEECCCCcEEEEeCCccccc
Confidence 999999999999999998654 688999999999999999999 7889999999999999999999999999999764
Q ss_pred cCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhhh-----------HHHHHHHH
Q 001988 877 SGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA-----------KEQCLLSI 945 (985)
Q Consensus 877 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~l 945 (985)
.... ......+||+.|+|||.+.+..++.++|+ |++|+++++++++..++........ +...+.++
T Consensus 172 ~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Di-wslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p~~~~~~~ 248 (327)
T 3a62_A 172 IHDG--TVTHTFCGTIEYMAPEILMRSGHNRAVDW-WSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLPPYLTQEA 248 (327)
T ss_dssp ---------CTTSSCCTTSCHHHHTTSCCCTHHHH-HHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCTTSCHHH
T ss_pred ccCC--ccccccCCCcCccCHhhCcCCCCCCcccc-hhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHH
Confidence 3222 22344579999999999999999999999 9999999999999877654322211 12245789
Q ss_pred HHHHHHccCCCCCCCC-----CHHHHHH
Q 001988 946 FSLALECTMESPEKRI-----DAKDTIT 968 (985)
Q Consensus 946 ~~l~~~cl~~~P~~RP-----t~~ev~~ 968 (985)
.+++.+||..||.+|| ++.|+++
T Consensus 249 ~~li~~~L~~dp~~R~~~~~~~~~e~l~ 276 (327)
T 3a62_A 249 RDLLKKLLKRNAASRLGAGPGDAGEVQA 276 (327)
T ss_dssp HHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred HHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence 9999999999999999 6677764
No 153
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.1e-35 Score=322.61 Aligned_cols=249 Identities=20% Similarity=0.316 Sum_probs=206.4
Q ss_pred CccCCceeeccCceeEEEEEEc-C---CcEEEEEEeccCCc-chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCce-EEE
Q 001988 727 NFAENNIIGIGGFGSVYRARLE-D---GVEIAIKVFHPQCA-STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFK-ALV 800 (985)
Q Consensus 727 ~~~~~~~ig~G~~g~V~~~~~~-~---~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~-~lv 800 (985)
.|...+.||+|+||.||+|++. + +..||+|++..... ...+.+.+|++++++++||||+++++++.+.+.. ++|
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v 101 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL 101 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence 4566789999999999999853 2 33799999976433 3456789999999999999999999999876654 999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCC
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGED 880 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~ 880 (985)
|||+++|+|.+++......+++..+..++.|++.||+|| |+.||+||||||+||+++.++.+||+|||+++.+....
T Consensus 102 ~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~L---H~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~ 178 (298)
T 3pls_A 102 LPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYL---AEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDRE 178 (298)
T ss_dssp ECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHH---HHTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGG
T ss_pred EecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHH---HhCCcccCCCCcceEEEcCCCcEEeCcCCCcccccCCc
Confidence 999999999999988777889999999999999999999 78899999999999999999999999999998764322
Q ss_pred C--cceecccccccccccccccccCccchhhhcccccccchhhhcccccc-cCcchhh------------hhHHHHHHHH
Q 001988 881 E--STMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLL-SGEEKHF------------AAKEQCLLSI 945 (985)
Q Consensus 881 ~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~-~~~~~~~------------~~~~~~~~~l 945 (985)
. ........+|+.|+|||.+.+..++.++|+ |++|+++++++++..+ ....... ..+..+++++
T Consensus 179 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 257 (298)
T 3pls_A 179 YYSVQQHRHARLPVKWTALESLQTYRFTTKSDV-WSFGVLLWELLTRGAPPYRHIDPFDLTHFLAQGRRLPQPEYCPDSL 257 (298)
T ss_dssp GGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHH-HHHHHHHHHHHHTSCCTTTTSCGGGHHHHHHTTCCCCCCTTCCHHH
T ss_pred ccccccCcCCCCCccccChhhhccCCCChhhch-hhHHHHHHHHhhCCCCCCccCCHHHHHHHhhcCCCCCCCccchHHH
Confidence 1 112234468899999999999999999999 9999999999995443 3222111 1122356789
Q ss_pred HHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhcc
Q 001988 946 FSLALECTMESPEKRIDAKDTITRLLKIRDTLSK 979 (985)
Q Consensus 946 ~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~~ 979 (985)
.+++.+||..+|.+||++.++++.|+++.+.+..
T Consensus 258 ~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~~ 291 (298)
T 3pls_A 258 YQVMQQCWEADPAVRPTFRVLVGEVEQIVSALLG 291 (298)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHccCChhhCcCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999887654
No 154
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=2.8e-35 Score=329.43 Aligned_cols=234 Identities=22% Similarity=0.255 Sum_probs=202.1
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC---cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC---ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~---~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv 800 (985)
.++|...+.||+|+||.||+|+.. +|+.||+|++.+.. ....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 119 (350)
T 1rdq_E 40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV 119 (350)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEE
Confidence 367889999999999999999975 78999999997542 12346788999999999999999999999999999999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCC
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGED 880 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~ 880 (985)
|||+++|+|.+++...+ .+++..+..++.||+.||+|| |++||+||||||+||+++.++.+||+|||+++.....
T Consensus 120 ~e~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~L---H~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~- 194 (350)
T 1rdq_E 120 MEYVAGGEMFSHLRRIG-RFSEPHARFYAAQIVLTFEYL---HSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR- 194 (350)
T ss_dssp EECCTTCBHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC-
T ss_pred EcCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH---HHCCcccccCccceEEECCCCCEEEcccccceeccCC-
Confidence 99999999999998754 689999999999999999999 7899999999999999999999999999999876432
Q ss_pred CcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhhh-----------HHHHHHHHHHHH
Q 001988 881 ESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA-----------KEQCLLSIFSLA 949 (985)
Q Consensus 881 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~l~~l~ 949 (985)
....+||+.|+|||.+.+..++.++|+ |++|+++++++++..+......... +..++.++.+++
T Consensus 195 ----~~~~~gt~~y~aPE~~~~~~~~~~~Di-wslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li 269 (350)
T 1rdq_E 195 ----TWTLCGTPEALAPEIILSKGYNKAVDW-WALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLL 269 (350)
T ss_dssp ----BCCCEECGGGCCHHHHTTCCBCTHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTCCHHHHHHH
T ss_pred ----cccccCCccccCHHHhcCCCCCCcCCE-ecccHhHhHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHH
Confidence 234579999999999999999999999 9999999999999876544322111 123567899999
Q ss_pred HHccCCCCCCCCC-----HHHHHH
Q 001988 950 LECTMESPEKRID-----AKDTIT 968 (985)
Q Consensus 950 ~~cl~~~P~~RPt-----~~ev~~ 968 (985)
.+||..||.+||+ +.|+.+
T Consensus 270 ~~lL~~dp~~R~~~~~~~~~ei~~ 293 (350)
T 1rdq_E 270 RNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp HHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred HHHhhcCHHhccCCccCCHHHHHh
Confidence 9999999999998 777764
No 155
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=2.8e-35 Score=325.79 Aligned_cols=237 Identities=22% Similarity=0.319 Sum_probs=184.9
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc-chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEe
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA-STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLE 802 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e 802 (985)
.++|+..+.||+|+||.||+|... +++.||+|+++.... .....+.+|++++++++||||+++++++.+++..++|||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 83 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE 83 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence 467899999999999999999865 789999999975532 234678899999999999999999999999999999999
Q ss_pred ccCCCChHHHhhcC-----CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceecc
Q 001988 803 YMSNGSLEDCLHSS-----NCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLS 877 (985)
Q Consensus 803 ~~~~gsL~~~l~~~-----~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~ 877 (985)
|++ |+|.+++... ...+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++.+.
T Consensus 84 ~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~l---H~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 159 (317)
T 2pmi_A 84 FMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFC---HENKILHRDLKPQNLLINKRGQLKLGDFGLARAFG 159 (317)
T ss_dssp CCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCCGGGEEECTTCCEEECCCSSCEETT
T ss_pred ecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHH---HHCCeeeCCCChHHeEEcCCCCEEECcCccceecC
Confidence 997 5999988754 23588999999999999999999 78999999999999999999999999999998864
Q ss_pred CCCCcceeccccccccccccccccc-CccchhhhcccccccchhhhcccccccCcchhhhh-------------------
Q 001988 878 GEDESTMRTQTLATIGYMAPDEIFV-GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA------------------- 937 (985)
Q Consensus 878 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~------------------- 937 (985)
.... ......||+.|+|||.+.+ ..++.++|+ |++|+++++++++..++........
T Consensus 160 ~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~Di-wslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~ 236 (317)
T 2pmi_A 160 IPVN--TFSSEVVTLWYRAPDVLMGSRTYSTSIDI-WSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSV 236 (317)
T ss_dssp SCCC--CCCCCCSCCTTCCHHHHTTCCCCCTHHHH-HHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCGGG
T ss_pred CCcc--cCCCCcccccccCchHhhCCCCCCcHHHH-HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhhhh
Confidence 3221 2234568999999999876 468999999 9999999999998865533211100
Q ss_pred --------------------------HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 938 --------------------------KEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 938 --------------------------~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
.+..+.++.+++.+|+..||++|||+.|+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~ 293 (317)
T 2pmi_A 237 TKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALH 293 (317)
T ss_dssp GGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred hhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhC
Confidence 0123467899999999999999999999875
No 156
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.8e-35 Score=352.45 Aligned_cols=251 Identities=22% Similarity=0.344 Sum_probs=205.5
Q ss_pred CccCCc-eeeccCceeEEEEEEc---CCcEEEEEEeccCCc-chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEE
Q 001988 727 NFAENN-IIGIGGFGSVYRARLE---DGVEIAIKVFHPQCA-STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVL 801 (985)
Q Consensus 727 ~~~~~~-~ig~G~~g~V~~~~~~---~~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~ 801 (985)
++...+ .||+|+||.||+|.+. ++..||||+++.... ...+.+.+|++++++++|||||++++++.. +..++||
T Consensus 336 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~ 414 (613)
T 2ozo_A 336 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVM 414 (613)
T ss_dssp SEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEE
T ss_pred ceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEE
Confidence 333344 7999999999999864 567799999986532 356789999999999999999999999976 5689999
Q ss_pred eccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCC
Q 001988 802 EYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDE 881 (985)
Q Consensus 802 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 881 (985)
||+++|+|.+++......+++..+..++.||+.||+|| |+++|+||||||+|||++.++.+||+|||+++.+.....
T Consensus 415 E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~L---H~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~ 491 (613)
T 2ozo_A 415 EMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYL---EEKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDS 491 (613)
T ss_dssp ECCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC----
T ss_pred EeCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH---HHCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCc
Confidence 99999999999987777799999999999999999999 789999999999999999999999999999987643322
Q ss_pred c-ceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhh------------hhHHHHHHHHHH
Q 001988 882 S-TMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHF------------AAKEQCLLSIFS 947 (985)
Q Consensus 882 ~-~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~------------~~~~~~~~~l~~ 947 (985)
. .......+++.|+|||.+..+.++.++|+ |++|++++|+++ |..++...... ..+..+++++.+
T Consensus 492 ~~~~~~~~~~~~~y~APE~~~~~~~~~~sDv-wSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~ 570 (613)
T 2ozo_A 492 YYTARSAGKWPLKWYAPECINFRKFSSRSDV-WSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYA 570 (613)
T ss_dssp ----------CCTTSCHHHHHHCCCCHHHHH-HHHHHHHHHHHTTSCCTTTTCCSHHHHHHHHTTCCCCCCTTCCHHHHH
T ss_pred eeeeccCCCCccceeCHhhhcCCCCCcHHHH-HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHH
Confidence 1 11222346789999999999999999999 999999999997 77655432211 122346789999
Q ss_pred HHHHccCCCCCCCCCHHHHHHHHHHhHhhhccccC
Q 001988 948 LALECTMESPEKRIDAKDTITRLLKIRDTLSKRIG 982 (985)
Q Consensus 948 l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~~~~~ 982 (985)
+|.+||..+|++||++.++++.|+.+......+..
T Consensus 571 li~~cl~~dP~~RPs~~~l~~~L~~~~~~~~~~~~ 605 (613)
T 2ozo_A 571 LMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKVE 605 (613)
T ss_dssp HHHHTTCSSTTTSCCHHHHHHHHHHHHHHHSCSCC
T ss_pred HHHHHcCCChhHCcCHHHHHHHHHHHHHHhccccC
Confidence 99999999999999999999999998877665543
No 157
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=2.3e-35 Score=329.62 Aligned_cols=246 Identities=25% Similarity=0.346 Sum_probs=195.4
Q ss_pred hcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHH--HHhcCCCCeeeEEeeee-----cCCce
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEV--IKNIRHRNLVKIISSCS-----NDDFK 797 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~i--l~~l~h~niv~l~~~~~-----~~~~~ 797 (985)
.++|+..+.||+|+||.||+|+. +++.||||++.... ...+..|.++ +..++||||+++++++. .....
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 87 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN---RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEY 87 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc---hhhHHHHHHHHHHHhccCcchhhheecccccccCCCceE
Confidence 47889999999999999999987 58999999987442 2344445544 44589999999998553 23356
Q ss_pred EEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCC---------CeEeCCCCCCCEEEcCCCcEEEe
Q 001988 798 ALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHST---------PIIHCDLKPSNVLLDEDMVAHLS 868 (985)
Q Consensus 798 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~---------~ivHrDlk~~Nill~~~~~~kl~ 868 (985)
++||||+++|+|.+++.... .++..+.+++.|+++||+|| |+. ||+||||||+||+++.++.+||+
T Consensus 88 ~lv~e~~~~g~L~~~l~~~~--~~~~~~~~i~~qi~~~L~~L---H~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~ 162 (336)
T 3g2f_A 88 LLVMEYYPNGSLXKYLSLHT--SDWVSSCRLAHSVTRGLAYL---HTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVIS 162 (336)
T ss_dssp EEEECCCTTCBHHHHHHHCC--BCHHHHHHHHHHHHHHHHHH---HCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEEC
T ss_pred EEEEecCCCCcHHHHHhhcc--cchhHHHHHHHHHHHHHHHH---HhhhccccccccceeecccccceEEEcCCCcEEEe
Confidence 89999999999999997654 48899999999999999999 566 99999999999999999999999
Q ss_pred cccCceeccCCCC------cceeccccccccccccccccc-------CccchhhhcccccccchhhhcccccccCcchh-
Q 001988 869 DFGMAKLLSGEDE------STMRTQTLATIGYMAPDEIFV-------GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKH- 934 (985)
Q Consensus 869 DfGla~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~- 934 (985)
|||+++.+..... ........||+.|+|||.+.+ ..++.++|+ |++|+++++++++..+......
T Consensus 163 DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~Di-wslG~il~ell~g~~p~~~~~~~ 241 (336)
T 3g2f_A 163 DFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDM-YALGLIYWEIFMRCTDLFPGESV 241 (336)
T ss_dssp CCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHH-HHHHHHHHHHHTTBGGGSTTSCC
T ss_pred eccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccch-HHHHHHHHHHHhcCCcCCCccch
Confidence 9999988753221 112234569999999999876 467788999 9999999999987543211100
Q ss_pred ----------------h--------------------hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhc
Q 001988 935 ----------------F--------------------AAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLS 978 (985)
Q Consensus 935 ----------------~--------------------~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~ 978 (985)
. .....++.++.+++.+||..||++|||+.|+++.|+++.+.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~ 321 (336)
T 3g2f_A 242 PEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWE 321 (336)
T ss_dssp CCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCC
T ss_pred hHHHHhhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHH
Confidence 0 0011255679999999999999999999999999999998877
Q ss_pred cc
Q 001988 979 KR 980 (985)
Q Consensus 979 ~~ 980 (985)
+.
T Consensus 322 ~~ 323 (336)
T 3g2f_A 322 RN 323 (336)
T ss_dssp C-
T ss_pred hc
Confidence 64
No 158
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.2e-35 Score=351.63 Aligned_cols=335 Identities=21% Similarity=0.242 Sum_probs=250.3
Q ss_pred CCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccEEEccCcccccccCCcccCCCCCceE
Q 001988 265 MSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMGSNSFSGFIPSAIGNLRNLKLF 344 (985)
Q Consensus 265 l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 344 (985)
+++++.|++++|.+. .+|..++..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 567888888888887 6777777788888888888888887777788888888888888888888777777888877777
Q ss_pred eccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhcccceeccccccccccCCcCCCCCCccEEEc
Q 001988 345 DIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSL 424 (985)
Q Consensus 345 ~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 424 (985)
+|++|+++.+++.. |.++++|++|+|++|.+. +..|..|..+++|++|+|
T Consensus 129 ~L~~n~l~~l~~~~-----~~~l~~L~~L~Ls~N~l~-------------------------~~~~~~~~~l~~L~~L~L 178 (597)
T 3oja_B 129 VLERNDLSSLPRGI-----FHNTPKLTTLSMSNNNLE-------------------------RIEDDTFQATTSLQNLQL 178 (597)
T ss_dssp ECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCC-------------------------BCCTTTTTTCTTCCEEEC
T ss_pred EeeCCCCCCCCHHH-----hccCCCCCEEEeeCCcCC-------------------------CCChhhhhcCCcCcEEEC
Confidence 77777777655431 345555555555555554 445555666666666666
Q ss_pred cCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCceEeeccceeeee
Q 001988 425 GGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFV 504 (985)
Q Consensus 425 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 504 (985)
++|.+++.. ++.+++|+.|++++|.+++. ...++|+.|++++|.++...+... ++|+.|+|++|.+++
T Consensus 179 ~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~~~---~~L~~L~L~~n~l~~- 246 (597)
T 3oja_B 179 SSNRLTHVD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGPVN---VELTILKLQHNNLTD- 246 (597)
T ss_dssp TTSCCSBCC---GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEEECSCC---SCCCEEECCSSCCCC-
T ss_pred cCCCCCCcC---hhhhhhhhhhhcccCccccc-----cCCchhheeeccCCcccccccccC---CCCCEEECCCCCCCC-
Confidence 666666432 34456666777777766532 234567777777777765443322 567788888887775
Q ss_pred cCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcc
Q 001988 505 IPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNM 584 (985)
Q Consensus 505 ~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 584 (985)
+..+..+++|+.|++++|.+.+..|..|+.+++|+.|+|++|+|++ +|..+..+++|+.|+|++|.++ .+|..+..+
T Consensus 247 -~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l 323 (597)
T 3oja_B 247 -TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 323 (597)
T ss_dssp -CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred -ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccC
Confidence 3567778888888888888888778888888888888888888885 5777788999999999999999 577888999
Q ss_pred cccCeEecCCCcccCCCCccccccccccccccccccccCCCCCCCCCcccccccccCCccccCCC
Q 001988 585 TSLESLDLSNNKISGSIPVSFEKLSYLKELNLSFNKLKGEIPRGGPFANFTAESFMGNELLCGLP 649 (985)
Q Consensus 585 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 649 (985)
++|+.|+|++|+|++. | +..+++|+.|++++|+++|..+. ..+..+....+.+++..|+.+
T Consensus 324 ~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 324 DRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp TTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred CCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 9999999999999864 3 67788999999999999987543 245566666778888899865
No 159
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=5.4e-35 Score=330.45 Aligned_cols=247 Identities=15% Similarity=0.137 Sum_probs=206.4
Q ss_pred HhcCccCCceeeccCceeEEEEE------EcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcC---CCCeeeEEeeeecC
Q 001988 724 ATDNFAENNIIGIGGFGSVYRAR------LEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIR---HRNLVKIISSCSND 794 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~------~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~---h~niv~l~~~~~~~ 794 (985)
..++|...+.||+|+||.||+|. ..+++.||||+++.. ...++..|++++++++ |+||+++++++...
T Consensus 63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~ 139 (365)
T 3e7e_A 63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQ 139 (365)
T ss_dssp SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECS
T ss_pred CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHHhhhhhhhhhhhhheeeecC
Confidence 45779999999999999999994 447889999999754 3457788899988887 99999999999999
Q ss_pred CceEEEEeccCCCChHHHhhc----CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcC---------
Q 001988 795 DFKALVLEYMSNGSLEDCLHS----SNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDE--------- 861 (985)
Q Consensus 795 ~~~~lv~e~~~~gsL~~~l~~----~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~--------- 861 (985)
+..++||||+++|+|.+++.. ....+++..++.++.|++.||+|| |++|||||||||+|||++.
T Consensus 140 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~l---H~~~ivHrDiKp~NIll~~~~~~~~~~~ 216 (365)
T 3e7e_A 140 NGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQV---HDCEIIHGDIKPDNFILGNGFLEQDDED 216 (365)
T ss_dssp SCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHH---HTTTEECCCCSGGGEEECGGGTCC----
T ss_pred CCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHH---hhCCeecCCCCHHHEEecccccCccccc
Confidence 999999999999999999975 345799999999999999999999 7899999999999999998
Q ss_pred --CCcEEEecccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh---
Q 001988 862 --DMVAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA--- 936 (985)
Q Consensus 862 --~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~--- 936 (985)
++.+||+|||+|+.+............+||+.|+|||++.+..++.++|+ |++|++++++++|+.+........
T Consensus 217 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di-wslG~il~elltg~~pf~~~~~~~~~~ 295 (365)
T 3e7e_A 217 DLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDY-FGVAATVYCMLFGTYMKVKNEGGECKP 295 (365)
T ss_dssp --CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHH-HHHHHHHHHHHHSSCCCEEEETTEEEE
T ss_pred cccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccH-HHHHHHHHHHHhCCCccccCCCCceee
Confidence 89999999999987654444444566789999999999999999999999 999999999999986543221100
Q ss_pred ----hHHHHHHHHHHHHHHccCCCCCCC-CCHHHHHHHHHHhHhhh
Q 001988 937 ----AKEQCLLSIFSLALECTMESPEKR-IDAKDTITRLLKIRDTL 977 (985)
Q Consensus 937 ----~~~~~~~~l~~l~~~cl~~~P~~R-Pt~~ev~~~L~~i~~~~ 977 (985)
......+.+.+++..|+..+|.+| |++.++.+.|+++.+..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~~ 341 (365)
T 3e7e_A 296 EGLFRRLPHLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQH 341 (365)
T ss_dssp CSCCTTCSSHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHHHH
T ss_pred chhccccCcHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHh
Confidence 000124567889999999999988 58888888888877653
No 160
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=2.6e-35 Score=329.60 Aligned_cols=238 Identities=21% Similarity=0.210 Sum_probs=200.7
Q ss_pred HhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC---cchHHHHHHHHHHHHhc-CCCCeeeEEeeeecCCceE
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC---ASTLKSFEAECEVIKNI-RHRNLVKIISSCSNDDFKA 798 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~---~~~~~~~~~E~~il~~l-~h~niv~l~~~~~~~~~~~ 798 (985)
..++|...+.||+|+||.||+|+.+ +++.||+|++++.. ......+..|.++++.+ +||+|+++++++++.+..|
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~ 97 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 97 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence 4578999999999999999999976 57889999997542 22346678999999988 7999999999999999999
Q ss_pred EEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccC
Q 001988 799 LVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSG 878 (985)
Q Consensus 799 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~ 878 (985)
+||||++||+|.+++...+ .+++..+..++.||+.||+|| |++||+||||||+||+++.+|.+||+|||+++....
T Consensus 98 lv~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~L---H~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~ 173 (353)
T 2i0e_A 98 FVMEYVNGGDLMYHIQQVG-RFKEPHAVFYAAEIAIGLFFL---QSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW 173 (353)
T ss_dssp EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHH---HHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCC
T ss_pred EEEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HHCCEEeccCCHHHEEEcCCCcEEEEeCCccccccc
Confidence 9999999999999998654 689999999999999999999 788999999999999999999999999999986432
Q ss_pred CCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhhh-----------HHHHHHHHHH
Q 001988 879 EDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA-----------KEQCLLSIFS 947 (985)
Q Consensus 879 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~l~~ 947 (985)
.. ......+||+.|+|||.+.+..++.++|+ |++|++++++++|..+......... +...+.++.+
T Consensus 174 ~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Di-wslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~ 250 (353)
T 2i0e_A 174 DG--VTTKTFCGTPDYIAPEIIAYQPYGKSVDW-WAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKSMSKEAVA 250 (353)
T ss_dssp TT--CCBCCCCSCGGGCCHHHHTTCCBSTHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHH
T ss_pred CC--cccccccCCccccChhhhcCCCcCCcccc-cchHHHHHHHHcCCCCCCCCCHHHHHHHHHhCCCCCCCCCCHHHHH
Confidence 22 22345679999999999999999999999 9999999999999876654322111 1234678999
Q ss_pred HHHHccCCCCCCCCC-----HHHHHH
Q 001988 948 LALECTMESPEKRID-----AKDTIT 968 (985)
Q Consensus 948 l~~~cl~~~P~~RPt-----~~ev~~ 968 (985)
++.+|+..||.+||+ +.|+.+
T Consensus 251 li~~lL~~dP~~R~~~~~~~~~~i~~ 276 (353)
T 2i0e_A 251 ICKGLMTKHPGKRLGCGPEGERDIKE 276 (353)
T ss_dssp HHHHHTCSCTTSCTTCSTTHHHHHHT
T ss_pred HHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence 999999999999996 455553
No 161
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=2.7e-35 Score=330.18 Aligned_cols=235 Identities=22% Similarity=0.272 Sum_probs=186.6
Q ss_pred HhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEe
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLE 802 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e 802 (985)
..++|...+.||+|+||.||+|+.. +++.||||+++... ..+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 128 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLE 128 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEE
Confidence 3567899999999999999999976 68899999997553 34678899999999999999999999999999999999
Q ss_pred ccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcC---CCcEEEecccCceeccCC
Q 001988 803 YMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDE---DMVAHLSDFGMAKLLSGE 879 (985)
Q Consensus 803 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~---~~~~kl~DfGla~~~~~~ 879 (985)
|+++|+|.+++...+ .+++..+..++.|++.||+|| |+.||+||||||+||+++. ++.+||+|||+++.....
T Consensus 129 ~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~L~~L---H~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~ 204 (349)
T 2w4o_A 129 LVTGGELFDRIVEKG-YYSERDAADAVKQILEAVAYL---HENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQ 204 (349)
T ss_dssp CCCSCBHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHH---HHTTCCCCCCCGGGEEESSSSTTCCEEECCCC--------
T ss_pred eCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HHCCeEecCCCcccEEEecCCCCCCEEEccCccccccCcc
Confidence 999999999998654 689999999999999999999 7889999999999999975 889999999999876422
Q ss_pred CCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh----------------hHHHHHH
Q 001988 880 DESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA----------------AKEQCLL 943 (985)
Q Consensus 880 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~----------------~~~~~~~ 943 (985)
.......||+.|+|||.+.+..++.++|+ |++|+++++++++..+........ ....++.
T Consensus 205 ---~~~~~~~gt~~y~aPE~~~~~~~~~~~Di-wslG~il~ell~g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 280 (349)
T 2w4o_A 205 ---VLMKTVCGTPGYCAPEILRGCAYGPEVDM-WSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEVSL 280 (349)
T ss_dssp -----------CGGGSCHHHHTTCCCCTHHHH-HHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHTTCCCCCTTTTTTSCH
T ss_pred ---cccccccCCCCccCHHHhcCCCCCcccch-HHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhCCCccCCchhhhCCH
Confidence 12234569999999999999999999999 999999999999876654322111 0123567
Q ss_pred HHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 944 SIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 944 ~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
++.+++.+|+..||++||++.|+++
T Consensus 281 ~~~~li~~~L~~dP~~Rpt~~e~l~ 305 (349)
T 2w4o_A 281 NAKDLVRKLIVLDPKKRLTTFQALQ 305 (349)
T ss_dssp HHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred HHHHHHHHHccCChhhCcCHHHHhc
Confidence 8999999999999999999999886
No 162
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.7e-35 Score=331.48 Aligned_cols=238 Identities=22% Similarity=0.306 Sum_probs=194.0
Q ss_pred hcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCc--chHHHHHHHHHHHHhcCC--CCeeeEEeeeecCCceEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCA--STLKSFEAECEVIKNIRH--RNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~h--~niv~l~~~~~~~~~~~lv 800 (985)
.++|+..+.||+|+||.||+|...+++.||||++..... ...+.+.+|++++++++| |||+++++++.+++..++|
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 87 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 87 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEE
Confidence 467899999999999999999998899999999875533 234678999999999986 9999999999999999999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCC
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGED 880 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~ 880 (985)
||| .+|+|.+++.... .+++.++..++.|++.||+|| |++||+||||||+||+++ ++.+||+|||+++.+....
T Consensus 88 ~e~-~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~al~~l---H~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~ 161 (343)
T 3dbq_A 88 MEC-GNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTI---HQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDT 161 (343)
T ss_dssp ECC-CSEEHHHHHHHSC-CCCHHHHHHHHHHHHHHHHHH---HHTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC----
T ss_pred EeC-CCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HhCCeecCCCCcceEEEE-CCcEEEeecccccccCccc
Confidence 995 5889999998754 689999999999999999999 788999999999999997 6789999999998875444
Q ss_pred Ccceeccccccccccccccccc-----------CccchhhhcccccccchhhhcccccccCcchhh-h------------
Q 001988 881 ESTMRTQTLATIGYMAPDEIFV-----------GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF-A------------ 936 (985)
Q Consensus 881 ~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~-~------------ 936 (985)
........+||+.|+|||.+.+ ..++.++|+ |++|+++++++++..++...... .
T Consensus 162 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di-wslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 3dbq_A 162 TSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDV-WSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEI 240 (343)
T ss_dssp --------CCCCSSCCHHHHHHCC-----------CCHHHHH-HHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCC
T ss_pred ccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhH-HHHHHHHHHHHhCCCcchhhhhHHHHHHHHhcCCccc
Confidence 3333445679999999999865 778999999 99999999999998765432111 0
Q ss_pred -hHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 001988 937 -AKEQCLLSIFSLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 937 -~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
.+..++.++.+++.+||..||.+||++.|+++.
T Consensus 241 ~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h 274 (343)
T 3dbq_A 241 EFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 274 (343)
T ss_dssp CCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred CCcccCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence 111234678999999999999999999999864
No 163
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=4.8e-35 Score=333.91 Aligned_cols=242 Identities=16% Similarity=0.237 Sum_probs=201.9
Q ss_pred HhcCccCCceeecc--CceeEEEEEEc-CCcEEEEEEeccCCc--chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceE
Q 001988 724 ATDNFAENNIIGIG--GFGSVYRARLE-DGVEIAIKVFHPQCA--STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKA 798 (985)
Q Consensus 724 ~~~~~~~~~~ig~G--~~g~V~~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~ 798 (985)
..++|+..+.||+| +||.||+|+.. +++.||||+++.... ...+.+.+|++++++++|||||++++++.+++..+
T Consensus 23 ~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 102 (389)
T 3gni_B 23 EGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELW 102 (389)
T ss_dssp CGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred CCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEE
Confidence 34678999999999 99999999976 799999999976532 23467889999999999999999999999999999
Q ss_pred EEEeccCCCChHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceecc
Q 001988 799 LVLEYMSNGSLEDCLHSS-NCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLS 877 (985)
Q Consensus 799 lv~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~ 877 (985)
+||||+++|+|.+++... ...+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||.+....
T Consensus 103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~L---H~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~ 179 (389)
T 3gni_B 103 VVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYI---HHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMI 179 (389)
T ss_dssp EEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCSGGGEEECTTCCEEECCGGGCEECE
T ss_pred EEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHH---HhCCeecCCCCHHHEEEcCCCCEEEcccccceeec
Confidence 999999999999999865 34689999999999999999999 78999999999999999999999999999987653
Q ss_pred CCCC-----cceeccccccccccccccccc--CccchhhhcccccccchhhhcccccccCcchhhh--------------
Q 001988 878 GEDE-----STMRTQTLATIGYMAPDEIFV--GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA-------------- 936 (985)
Q Consensus 878 ~~~~-----~~~~~~~~gt~~y~aPE~~~~--~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~-------------- 936 (985)
.... .......+||+.|+|||.+.+ ..++.++|+ |++|+++++++++..++.......
T Consensus 180 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~Di-wslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~ 258 (389)
T 3gni_B 180 SHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDI-YSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLL 258 (389)
T ss_dssp ETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHH-HHHHHHHHHHHHSSCTTTTCCSTTHHHHC---------
T ss_pred cccccccccccccccccccccccCHHHHhccCCCCCcHhHH-HHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCccc
Confidence 2211 111223468999999999987 678999999 999999999999887654321110
Q ss_pred -------------------------------------------hHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 001988 937 -------------------------------------------AKEQCLLSIFSLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 937 -------------------------------------------~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
.+..+++++.+++.+||..||++|||+.|+++.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~h 334 (389)
T 3gni_B 259 DTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNH 334 (389)
T ss_dssp -----------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred cccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcC
Confidence 112234678999999999999999999999853
No 164
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=6.7e-35 Score=319.59 Aligned_cols=251 Identities=21% Similarity=0.238 Sum_probs=205.8
Q ss_pred HHhcCccCCceeeccCceeEEEEEE-cCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeee-ecCCceEEE
Q 001988 723 RATDNFAENNIIGIGGFGSVYRARL-EDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSC-SNDDFKALV 800 (985)
Q Consensus 723 ~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~-~~~~~~~lv 800 (985)
...++|...+.||+|+||.||+|+. .+++.||||++.... ....+.+|++++++++|++++..++++ ...+..++|
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv 83 (296)
T 4hgt_A 6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMV 83 (296)
T ss_dssp -----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEE
T ss_pred ccCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc--cchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEE
Confidence 3457899999999999999999996 578999999876542 224578999999999988877766655 667788999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEE---cCCCcEEEecccCceecc
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLL---DEDMVAHLSDFGMAKLLS 877 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill---~~~~~~kl~DfGla~~~~ 877 (985)
|||+ +++|.+++......+++..+..++.|++.||+|| |++||+||||||+||++ ++++.+||+|||+++.+.
T Consensus 84 ~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~L---H~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~ 159 (296)
T 4hgt_A 84 MELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYI---HSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYR 159 (296)
T ss_dssp EECC-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECB
T ss_pred EEcc-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH---HHCCeecCCCCHHHeeeeccCCCCeEEEecCccceecc
Confidence 9999 9999999987666799999999999999999999 78899999999999999 889999999999999875
Q ss_pred CCCCc-----ceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh--------------hhH
Q 001988 878 GEDES-----TMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF--------------AAK 938 (985)
Q Consensus 878 ~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~--------------~~~ 938 (985)
..... .......||+.|+|||.+.+..++.++|+ |++|+++++++++..++...... ..+
T Consensus 160 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di-~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~ 238 (296)
T 4hgt_A 160 DARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDL-ESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTP 238 (296)
T ss_dssp CTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHH-HHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSC
T ss_pred CcccCccCCCCcccccCCCccccchHHhcCCCCCchhHH-HHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccch
Confidence 43321 12234579999999999999999999999 99999999999998776532110 000
Q ss_pred -----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhccc
Q 001988 939 -----EQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLSKR 980 (985)
Q Consensus 939 -----~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~~~ 980 (985)
..+++++.+++.+||..+|++||++.++++.|+++.++....
T Consensus 239 ~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~~~~ 285 (296)
T 4hgt_A 239 IEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFS 285 (296)
T ss_dssp HHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHHTCC
T ss_pred hhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 223678999999999999999999999999999998876543
No 165
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=3.5e-35 Score=330.65 Aligned_cols=236 Identities=22% Similarity=0.240 Sum_probs=191.8
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEec
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLEY 803 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e~ 803 (985)
.++|...+.||+|+||.||+|+.. +++.||||++.... ...+.+.+|+.++++++||||+++++++.+.+..++||||
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 97 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGA-AIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEY 97 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESST-TSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCc-cccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEe
Confidence 468999999999999999999976 78999999997653 2346788999999999999999999999999999999999
Q ss_pred cCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCc--EEEecccCceeccCCCC
Q 001988 804 MSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMV--AHLSDFGMAKLLSGEDE 881 (985)
Q Consensus 804 ~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~--~kl~DfGla~~~~~~~~ 881 (985)
+++|+|.+++...+ .+++..+..++.|++.||+|| |++||+||||||+||+++.++. +||+|||+++.....
T Consensus 98 ~~~~~L~~~l~~~~-~~~~~~~~~i~~ql~~~L~~L---H~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~-- 171 (361)
T 3uc3_A 98 ASGGELYERICNAG-RFSEDEARFFFQQLLSGVSYC---HSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLH-- 171 (361)
T ss_dssp CCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHH---HHTTCCSCCCCGGGEEECSSSSCCEEECCCCCC--------
T ss_pred CCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HHCCcccCCCCHHHEEEcCCCCceEEEeecCcccccccc--
Confidence 99999999997654 689999999999999999999 7899999999999999987775 999999999754221
Q ss_pred cceecccccccccccccccccCccchh-hhcccccccchhhhcccccccCcchhhh-----------------hHHHHHH
Q 001988 882 STMRTQTLATIGYMAPDEIFVGELSLK-RWVNDLLPVSLVEVVDKSLLSGEEKHFA-----------------AKEQCLL 943 (985)
Q Consensus 882 ~~~~~~~~gt~~y~aPE~~~~~~~~~~-~dv~~~~g~~~~~i~~~~~~~~~~~~~~-----------------~~~~~~~ 943 (985)
......+||+.|+|||.+.+..+..+ +|+ |++|+++++++++..++....... ....+++
T Consensus 172 -~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di-wslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 249 (361)
T 3uc3_A 172 -SQPKSTVGTPAYIAPEVLLRQEYDGKIADV-WSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYSIPDDIRISP 249 (361)
T ss_dssp ----------CTTSCHHHHHCSSCCHHHHHH-HHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTCCCCCTTSCCCH
T ss_pred -CCCCCCcCCCCcCChhhhcCCCCCCCeeee-ehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCCCCCcCCCCH
Confidence 22234569999999999988888666 788 999999999999987665422110 0112457
Q ss_pred HHHHHHHHccCCCCCCCCCHHHHHHH
Q 001988 944 SIFSLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 944 ~l~~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
++.+++.+||..||.+|||+.|+++.
T Consensus 250 ~~~~li~~~L~~dP~~Rps~~ell~h 275 (361)
T 3uc3_A 250 ECCHLISRIFVADPATRISIPEIKTH 275 (361)
T ss_dssp HHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred HHHHHHHHHccCChhHCcCHHHHHhC
Confidence 78999999999999999999999864
No 166
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=320.40 Aligned_cols=236 Identities=22% Similarity=0.331 Sum_probs=194.0
Q ss_pred cCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcc--hHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEe
Q 001988 726 DNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCAS--TLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLE 802 (985)
Q Consensus 726 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~--~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e 802 (985)
++|+..+.||+|+||.||+|+.. +++.||+|++...... ..+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE 82 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence 67899999999999999999975 6899999998765332 24667899999999999999999999999999999999
Q ss_pred ccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCCc
Q 001988 803 YMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDES 882 (985)
Q Consensus 803 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~~ 882 (985)
|+++++|.+++.... .+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++.......
T Consensus 83 ~~~~~~l~~~~~~~~-~~~~~~~~~i~~~l~~~l~~l---H~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~- 157 (311)
T 4agu_A 83 YCDHTVLHELDRYQR-GVPEHLVKSITWQTLQAVNFC---HKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSD- 157 (311)
T ss_dssp CCSEEHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCSGGGEEECTTSCEEECCCTTCEECC-----
T ss_pred eCCCchHHHHHhhhc-CCCHHHHHHHHHHHHHHHHHH---HHCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCccc-
Confidence 999999998877553 689999999999999999999 788999999999999999999999999999988653222
Q ss_pred ceeccccccccccccccccc-CccchhhhcccccccchhhhcccccccCcchhhhhH-----------------------
Q 001988 883 TMRTQTLATIGYMAPDEIFV-GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAAK----------------------- 938 (985)
Q Consensus 883 ~~~~~~~gt~~y~aPE~~~~-~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~~----------------------- 938 (985)
......||+.|+|||.+.+ ..++.++|+ |++|+++++++++..+..........
T Consensus 158 -~~~~~~~~~~y~aPE~~~~~~~~~~~~Di-~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (311)
T 4agu_A 158 -YYDDEVATRWYRSPELLVGDTQYGPPVDV-WAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQY 235 (311)
T ss_dssp ---------GGGCCHHHHHTCSCCCTHHHH-HHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGG
T ss_pred -ccCCCcCCccccChHHHhcCCCCCcchhh-HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccccc
Confidence 2234569999999999876 667999999 99999999999987765433211100
Q ss_pred -------------------HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 939 -------------------EQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 939 -------------------~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
..++.++.+++.+||..||.+|||+.|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 284 (311)
T 4agu_A 236 FSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLH 284 (311)
T ss_dssp GTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred cccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence 123456889999999999999999999985
No 167
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=7.1e-35 Score=316.18 Aligned_cols=235 Identities=22% Similarity=0.245 Sum_probs=202.7
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEec
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLEY 803 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e~ 803 (985)
.++|...+.||+|+||.||+|... ++..||+|++........+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 87 (277)
T 3f3z_A 8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMEL 87 (277)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEec
Confidence 467999999999999999999975 6778999999876556678899999999999999999999999999999999999
Q ss_pred cCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEE---cCCCcEEEecccCceeccCCC
Q 001988 804 MSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLL---DEDMVAHLSDFGMAKLLSGED 880 (985)
Q Consensus 804 ~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill---~~~~~~kl~DfGla~~~~~~~ 880 (985)
+++++|.+++.... .+++..+..++.|++.||+|| |++||+||||||+||++ +.++.+||+|||++..+....
T Consensus 88 ~~~~~L~~~~~~~~-~~~~~~~~~i~~~i~~~l~~l---H~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~ 163 (277)
T 3f3z_A 88 CTGGELFERVVHKR-VFRESDAARIMKDVLSAVAYC---HKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGK 163 (277)
T ss_dssp CCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTS
T ss_pred cCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH---HHCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCcc
Confidence 99999999987654 689999999999999999999 78999999999999999 888999999999998865322
Q ss_pred CcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhhh---------------HHHHHHHH
Q 001988 881 ESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA---------------KEQCLLSI 945 (985)
Q Consensus 881 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~---------------~~~~~~~l 945 (985)
......||+.|+|||.+.+ .++.++|+ |++|+++++++++..+......... ...+++++
T Consensus 164 ---~~~~~~~t~~y~aPE~~~~-~~~~~~Di-~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (277)
T 3f3z_A 164 ---MMRTKVGTPYYVSPQVLEG-LYGPECDE-WSAGVMMYVLLCGYPPFSAPTDSEVMLKIREGTFTFPEKDWLNVSPQA 238 (277)
T ss_dssp ---CBCCCCSCTTTCCHHHHTT-CBCTTHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCHHHHTTSCHHH
T ss_pred ---chhccCCCCCccChHHhcc-cCCchhhe-hhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCchhhhcCCHHH
Confidence 2234569999999998754 58999999 9999999999998876654321110 11356789
Q ss_pred HHHHHHccCCCCCCCCCHHHHHH
Q 001988 946 FSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 946 ~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
.+++.+|+..||.+||++.|+++
T Consensus 239 ~~li~~~l~~dp~~R~s~~~~l~ 261 (277)
T 3f3z_A 239 ESLIRRLLTKSPKQRITSLQALE 261 (277)
T ss_dssp HHHHHHHTCSSTTTSCCHHHHTT
T ss_pred HHHHHHHccCChhhCcCHHHHhc
Confidence 99999999999999999999986
No 168
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=1.1e-34 Score=317.87 Aligned_cols=251 Identities=20% Similarity=0.226 Sum_probs=209.7
Q ss_pred HhcCccCCceeeccCceeEEEEEE-cCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeee-ecCCceEEEE
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARL-EDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSC-SNDDFKALVL 801 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~-~~~~~~~lv~ 801 (985)
..++|...+.||+|+||.||+|+. .+++.||||++..... .+.+.+|++++++++|++++..+.++ ...+..++||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~ 84 (296)
T 3uzp_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM 84 (296)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred eccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEE
Confidence 357899999999999999999996 5899999999875532 35688999999999988877666655 5667789999
Q ss_pred eccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEE---cCCCcEEEecccCceeccC
Q 001988 802 EYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLL---DEDMVAHLSDFGMAKLLSG 878 (985)
Q Consensus 802 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill---~~~~~~kl~DfGla~~~~~ 878 (985)
||+ +++|.+++......+++..+..++.|++.||+|| |++||+||||||+||++ ++++.+||+|||+++....
T Consensus 85 e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~l---H~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~ 160 (296)
T 3uzp_A 85 ELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYI---HSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRD 160 (296)
T ss_dssp ECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBC
T ss_pred Eec-CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHH---HhCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccc
Confidence 999 9999999986666799999999999999999999 78899999999999999 5889999999999988754
Q ss_pred CCCcc-----eecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh--------------h---
Q 001988 879 EDEST-----MRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF--------------A--- 936 (985)
Q Consensus 879 ~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~--------------~--- 936 (985)
..... ......||+.|+|||.+.+..++.++|+ |++|++++++++++.++...... .
T Consensus 161 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di-~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 239 (296)
T 3uzp_A 161 ARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDL-ESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPI 239 (296)
T ss_dssp TTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHH-HHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCH
T ss_pred cccccccccccccccccccccCChhhhcCCCCCcchhh-HHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCch
Confidence 33211 1234579999999999999999999999 99999999999998766532110 0
Q ss_pred --hHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhcccc
Q 001988 937 --AKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLSKRI 981 (985)
Q Consensus 937 --~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~~~~ 981 (985)
....+++++.+++.+||+.||.+||++.++++.|+++.++.....
T Consensus 240 ~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~~~ 286 (296)
T 3uzp_A 240 EVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSY 286 (296)
T ss_dssp HHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhcCCcc
Confidence 012346789999999999999999999999999999988765443
No 169
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=5.7e-35 Score=327.72 Aligned_cols=257 Identities=22% Similarity=0.239 Sum_probs=203.5
Q ss_pred HHHhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccC-----CcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCC
Q 001988 722 LRATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQ-----CASTLKSFEAECEVIKNIRHRNLVKIISSCSNDD 795 (985)
Q Consensus 722 ~~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~-----~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~ 795 (985)
....++|...+.||+|+||.||+|... +++.||+|++... .....+.+.+|++++++++||||+++++++.+.+
T Consensus 22 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~ 101 (345)
T 3hko_A 22 LELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQ 101 (345)
T ss_dssp HHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred hhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCC
Confidence 445678999999999999999999874 7889999998643 2345578899999999999999999999999999
Q ss_pred ceEEEEeccCCCChHHHhhcC---------------------------------------CCCCCHHHHHHHHHHHHHHH
Q 001988 796 FKALVLEYMSNGSLEDCLHSS---------------------------------------NCALNIFCRLNIMIDIASAL 836 (985)
Q Consensus 796 ~~~lv~e~~~~gsL~~~l~~~---------------------------------------~~~~~~~~~~~i~~~i~~~L 836 (985)
..++||||+++|+|.+++... ...+++..+..++.|++.||
T Consensus 102 ~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l 181 (345)
T 3hko_A 102 YICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSAL 181 (345)
T ss_dssp EEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHH
Confidence 999999999999999998521 11235677888999999999
Q ss_pred HHHHhcCCCCeEeCCCCCCCEEEcCCC--cEEEecccCceeccCCCC--cceeccccccccccccccccc--Cccchhhh
Q 001988 837 EYLHFGHSTPIIHCDLKPSNVLLDEDM--VAHLSDFGMAKLLSGEDE--STMRTQTLATIGYMAPDEIFV--GELSLKRW 910 (985)
Q Consensus 837 ~~Lh~~h~~~ivHrDlk~~Nill~~~~--~~kl~DfGla~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~--~~~~~~~d 910 (985)
+|| |+++|+||||||+||+++.++ .+||+|||+++.+..... ........||+.|+|||.+.+ ..++.++|
T Consensus 182 ~~L---H~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~D 258 (345)
T 3hko_A 182 HYL---HNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCD 258 (345)
T ss_dssp HHH---HHTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHH
T ss_pred HHH---HHCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHH
Confidence 999 788999999999999998776 899999999987643222 112345569999999999865 67889999
Q ss_pred cccccccchhhhcccccccCcchhhh---------------hHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHh
Q 001988 911 VNDLLPVSLVEVVDKSLLSGEEKHFA---------------AKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRD 975 (985)
Q Consensus 911 v~~~~g~~~~~i~~~~~~~~~~~~~~---------------~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~ 975 (985)
+ |++|+++++++++..++....... ....+++++.+++.+|+..+|.+||++.|+++. ..-+
T Consensus 259 i-wslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~h--p~~~ 335 (345)
T 3hko_A 259 A-WSAGVLLHLLLMGAVPFPGVNDADTISQVLNKKLCFENPNYNVLSPLARDLLSNLLNRNVDERFDAMRALQH--PWIS 335 (345)
T ss_dssp H-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCTTSGGGGGSCHHHHHHHHHHSCSCTTTSCCHHHHHHS--HHHH
T ss_pred H-HHHHHHHHHHHHCCCCCCCCChHHHHHHHHhcccccCCcccccCCHHHHHHHHHHcCCChhHCCCHHHHhcC--hhhc
Confidence 9 999999999999987764432211 111246789999999999999999999999873 2223
Q ss_pred hhccccCCC
Q 001988 976 TLSKRIGNL 984 (985)
Q Consensus 976 ~~~~~~~~~ 984 (985)
.+..++-.+
T Consensus 336 ~~~~~~~~~ 344 (345)
T 3hko_A 336 QFSDKIYKM 344 (345)
T ss_dssp TTSSCSSCC
T ss_pred cChHhhEec
Confidence 344444433
No 170
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=3.5e-35 Score=326.82 Aligned_cols=249 Identities=22% Similarity=0.353 Sum_probs=203.9
Q ss_pred hcCccCCceeeccCceeEEEEEE------cCCcEEEEEEeccCC-cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCce
Q 001988 725 TDNFAENNIIGIGGFGSVYRARL------EDGVEIAIKVFHPQC-ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFK 797 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~------~~~~~vAvK~~~~~~-~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~ 797 (985)
.++|...+.||+|+||.||+|++ .+++.||||++.... ......+.+|+.++++++||||+++++++.+.+..
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 108 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 108 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCc
Confidence 46889999999999999999984 257789999997543 33456789999999999999999999999999999
Q ss_pred EEEEeccCCCChHHHhhcCC------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcC---CCcEEEe
Q 001988 798 ALVLEYMSNGSLEDCLHSSN------CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDE---DMVAHLS 868 (985)
Q Consensus 798 ~lv~e~~~~gsL~~~l~~~~------~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~---~~~~kl~ 868 (985)
++||||+++|+|.+++.... ..+++..++.++.|++.||+|| |++||+||||||+||+++. +..+||+
T Consensus 109 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~L---H~~~i~H~dlkp~NIli~~~~~~~~~kl~ 185 (327)
T 2yfx_A 109 FILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYL---EENHFIHRDIAARNCLLTCPGPGRVAKIG 185 (327)
T ss_dssp EEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred EEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHH---hhCCeecCcCCHhHEEEecCCCcceEEEC
Confidence 99999999999999998653 3588999999999999999999 7889999999999999984 4469999
Q ss_pred cccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhhh-----------
Q 001988 869 DFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHFA----------- 936 (985)
Q Consensus 869 DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~~----------- 936 (985)
|||+++...............+|+.|+|||.+.+..++.++|+ |++|++++++++ +..+........
T Consensus 186 Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~ 264 (327)
T 2yfx_A 186 DFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDT-WSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRM 264 (327)
T ss_dssp CCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHH-HHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCC
T ss_pred ccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhH-HHHHHHHHHHHcCCCCCCCCcCHHHHHHHHhcCCCC
Confidence 9999986644333333344568999999999999999999999 999999999997 665544322111
Q ss_pred -hHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhh
Q 001988 937 -AKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTL 977 (985)
Q Consensus 937 -~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~ 977 (985)
.+..++..+.+++.+||..||.+||++.|+++.+..+.+..
T Consensus 265 ~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~~ 306 (327)
T 2yfx_A 265 DPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP 306 (327)
T ss_dssp CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred CCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcCH
Confidence 12235678999999999999999999999999999887643
No 171
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=5.5e-35 Score=338.80 Aligned_cols=236 Identities=25% Similarity=0.350 Sum_probs=203.0
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc---chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA---STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~---~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv 800 (985)
.++|...+.||+|+||.||+|+.. +|+.||||++..... .....+.+|+++++.++||||+++++++.+.+..++|
T Consensus 15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv 94 (476)
T 2y94_A 15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMV 94 (476)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 367889999999999999999976 899999999975421 2346789999999999999999999999999999999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCC
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGED 880 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~ 880 (985)
|||+++|+|.+++...+ .+++.....++.||+.||+|| |++||+||||||+||+++.++.+||+|||+++......
T Consensus 95 ~E~~~gg~L~~~l~~~~-~l~~~~~~~i~~qi~~aL~~L---H~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~ 170 (476)
T 2y94_A 95 MEYVSGGELFDYICKNG-RLDEKESRRLFQQILSGVDYC---HRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 170 (476)
T ss_dssp EECCSSEEHHHHTTSSS-SCCHHHHHHHHHHHHHHHHHH---HTTTEECSCCSGGGEEECTTCCEEECCCSSCEECCTTC
T ss_pred EeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HHCCCCcccccHHHEEEecCCCeEEEeccchhhccccc
Confidence 99999999999998654 689999999999999999999 78999999999999999999999999999998864322
Q ss_pred CcceecccccccccccccccccCcc-chhhhcccccccchhhhcccccccCcchhhh-----------hHHHHHHHHHHH
Q 001988 881 ESTMRTQTLATIGYMAPDEIFVGEL-SLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA-----------AKEQCLLSIFSL 948 (985)
Q Consensus 881 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~l~~l 948 (985)
.....+||+.|+|||.+.+..+ +.++|+ |++|++++++++|..++....... .+...+.++.++
T Consensus 171 ---~~~~~~gt~~y~aPE~~~~~~~~~~~~Di-wSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~L 246 (476)
T 2y94_A 171 ---FLRTSCGSPNYAAPEVISGRLYAGPEVDI-WSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVISL 246 (476)
T ss_dssp ---CBCCCCSCSTTCCHHHHTTCCBCSHHHHH-HHHHHHHHHHHHSSCSSCCSSSHHHHHHHHTTCCCCCTTCCHHHHHH
T ss_pred ---cccccCCCcCeEChhhccCCCCCCCccee-hhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCcCCCccCCHHHHHH
Confidence 2334579999999999988766 688999 999999999999987665432111 112245779999
Q ss_pred HHHccCCCCCCCCCHHHHHH
Q 001988 949 ALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 949 ~~~cl~~~P~~RPt~~ev~~ 968 (985)
+.+||..||.+|||+.|+++
T Consensus 247 i~~~L~~dP~~Rpt~~eil~ 266 (476)
T 2y94_A 247 LKHMLQVDPMKRATIKDIRE 266 (476)
T ss_dssp HHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHcCCCchhCcCHHHHHh
Confidence 99999999999999999987
No 172
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=2.2e-34 Score=322.48 Aligned_cols=256 Identities=22% Similarity=0.332 Sum_probs=208.1
Q ss_pred CHHHHHHHhcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHh--cCCCCeeeEEeeeecC
Q 001988 717 SYFELLRATDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKN--IRHRNLVKIISSCSND 794 (985)
Q Consensus 717 ~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~--l~h~niv~l~~~~~~~ 794 (985)
.+.......++|...+.||+|+||.||+|+. +++.||||++... ....+.+|+++++. ++||||+++++++...
T Consensus 33 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~ 108 (342)
T 1b6c_B 33 PLLVQRTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKD 108 (342)
T ss_dssp CHHHHHHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECC
T ss_pred ceeecccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeeccc
Confidence 3333445667899999999999999999998 4899999998643 34667889999988 6899999999999877
Q ss_pred C----ceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhc-----CCCCeEeCCCCCCCEEEcCCCcE
Q 001988 795 D----FKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFG-----HSTPIIHCDLKPSNVLLDEDMVA 865 (985)
Q Consensus 795 ~----~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~-----h~~~ivHrDlk~~Nill~~~~~~ 865 (985)
+ ..++||||+++|+|.+++... .+++..++.++.|++.||+|||.. |+++|+||||||+||+++.++.+
T Consensus 109 ~~~~~~~~lv~e~~~~g~L~~~l~~~--~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~ 186 (342)
T 1b6c_B 109 NGTWTQLWLVSDYHEHGSLFDYLNRY--TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTC 186 (342)
T ss_dssp CSSCCCEEEEECCCTTCBHHHHHHHC--CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCE
T ss_pred CCccceeEEEEeecCCCcHHHHHhcc--CccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCE
Confidence 5 789999999999999999864 588999999999999999999521 18999999999999999999999
Q ss_pred EEecccCceeccCCCCcc--eecccccccccccccccccC------ccchhhhcccccccchhhhcccc----------c
Q 001988 866 HLSDFGMAKLLSGEDEST--MRTQTLATIGYMAPDEIFVG------ELSLKRWVNDLLPVSLVEVVDKS----------L 927 (985)
Q Consensus 866 kl~DfGla~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~dv~~~~g~~~~~i~~~~----------~ 927 (985)
||+|||+++......... ......||+.|+|||.+.+. .++.++|+ |++|+++++++++. .
T Consensus 187 kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di-~slG~il~el~tg~~~~~~~~~~~~ 265 (342)
T 1b6c_B 187 CIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADI-YAMGLVFWEIARRCSIGGIHEDYQL 265 (342)
T ss_dssp EECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHH-HHHHHHHHHHHTTBCBTTBCCCCCC
T ss_pred EEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccH-HHHHHHHHHHHhccCcCCccccccc
Confidence 999999998875433221 22445699999999998765 34578899 99999999999873 2
Q ss_pred ccCcch--------------------hhh---hHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhcc
Q 001988 928 LSGEEK--------------------HFA---AKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLSK 979 (985)
Q Consensus 928 ~~~~~~--------------------~~~---~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~~ 979 (985)
+..... ..+ ....+++.+.+++.+||..||++||++.|+++.|+++.+....
T Consensus 266 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~~~~ 340 (342)
T 1b6c_B 266 PYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQEGI 340 (342)
T ss_dssp TTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHTTC-
T ss_pred CccccCcCcccHHHHHHHHHHHHhCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHHhcC
Confidence 221110 000 1124667899999999999999999999999999999876543
No 173
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=2.5e-35 Score=325.49 Aligned_cols=246 Identities=22% Similarity=0.378 Sum_probs=195.7
Q ss_pred hcCccCCceeeccCceeEEEEEE-cCCcEEEEEEeccCCcc---hHHHHHHHHHHHHhcCCCCeeeEEeeeecCCc----
Q 001988 725 TDNFAENNIIGIGGFGSVYRARL-EDGVEIAIKVFHPQCAS---TLKSFEAECEVIKNIRHRNLVKIISSCSNDDF---- 796 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vAvK~~~~~~~~---~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~---- 796 (985)
.++|+..+.||+|+||.||+|+. .+++.||||+++..... ....+.+|++++++++||||+++++++...+.
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 90 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 90 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence 46799999999999999999996 57899999999865332 24578899999999999999999999876544
Q ss_pred eEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceec
Q 001988 797 KALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLL 876 (985)
Q Consensus 797 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~ 876 (985)
.++||||+++|+|.+++...+ .+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++.+
T Consensus 91 ~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~l---H~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~ 166 (311)
T 3ork_A 91 PYIVMEYVDGVTLRDIVHTEG-PMTPKRAIEVIADACQALNFS---HQNGIIHRDVKPANIMISATNAVKVMDFGIARAI 166 (311)
T ss_dssp EEEEEECCCEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHH---HHTTCCCCCCCGGGEEEETTSCEEECCCSCC---
T ss_pred cEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HHCCCCcCCCCHHHEEEcCCCCEEEeeccCcccc
Confidence 399999999999999998654 689999999999999999999 7889999999999999999999999999999876
Q ss_pred cCCCCc-ceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh---------------hHHH
Q 001988 877 SGEDES-TMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA---------------AKEQ 940 (985)
Q Consensus 877 ~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~---------------~~~~ 940 (985)
...... .......||+.|+|||.+.+..++.++|+ |++|+++++++++..++....... ..+.
T Consensus 167 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di-~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (311)
T 3ork_A 167 ADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDV-YSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEG 245 (311)
T ss_dssp ---------------CCTTCCHHHHHTCCCCHHHHH-HHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCHHHHSTT
T ss_pred cccccccccccccCcCcccCCHHHhcCCCCCchHhH-HHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCCCcccccCC
Confidence 543222 22334569999999999999999999999 999999999999887664432111 1122
Q ss_pred HHHHHHHHHHHccCCCCCCCCCHHH-HHHHHHHhHh
Q 001988 941 CLLSIFSLALECTMESPEKRIDAKD-TITRLLKIRD 975 (985)
Q Consensus 941 ~~~~l~~l~~~cl~~~P~~RPt~~e-v~~~L~~i~~ 975 (985)
+++++.+++.+||..||.+||++.+ +.+.+.++..
T Consensus 246 ~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~ 281 (311)
T 3ork_A 246 LSADLDAVVLKALAKNPENRYQTAAEMRADLVRVHN 281 (311)
T ss_dssp CCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHHhc
Confidence 5678999999999999999996555 5556666544
No 174
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.7e-34 Score=319.28 Aligned_cols=307 Identities=26% Similarity=0.405 Sum_probs=226.7
Q ss_pred ccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccEEEccCcccccccCCcccCCCCC
Q 001988 262 IFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMGSNSFSGFIPSAIGNLRNL 341 (985)
Q Consensus 262 l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 341 (985)
+..+++|++|++++|.+. .+|. +..+++|++|++++|++++..+ +..+++|++|++++|.+++. +.+..+++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L 112 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNL 112 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred chhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence 456778888888888887 4554 3457778888888887775433 77777777777777777643 246667777
Q ss_pred ceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhcccceeccccccccccCCcCCCCCCccE
Q 001988 342 KLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIV 421 (985)
Q Consensus 342 ~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 421 (985)
++|++++|+++..++ +..+++|++|++++|.... .+ ..+..+++|++
T Consensus 113 ~~L~l~~n~i~~~~~-------~~~l~~L~~L~l~~n~~~~-------------------------~~-~~~~~l~~L~~ 159 (347)
T 4fmz_A 113 RELYLNEDNISDISP-------LANLTKMYSLNLGANHNLS-------------------------DL-SPLSNMTGLNY 159 (347)
T ss_dssp SEEECTTSCCCCCGG-------GTTCTTCCEEECTTCTTCC-------------------------CC-GGGTTCTTCCE
T ss_pred CEEECcCCcccCchh-------hccCCceeEEECCCCCCcc-------------------------cc-cchhhCCCCcE
Confidence 777777776665432 4455666666666654332 22 22666777777
Q ss_pred EEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCceEeecccee
Q 001988 422 LSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRF 501 (985)
Q Consensus 422 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 501 (985)
|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|++
T Consensus 160 L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 160 LTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKI 233 (347)
T ss_dssp EECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred EEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCcc
Confidence 7777777775444 6777778888888887775433 6777788888888888776544 77778888888888888
Q ss_pred eeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhh
Q 001988 502 TFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESF 581 (985)
Q Consensus 502 ~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 581 (985)
++..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|++++. ..+..+++|++|++++|++++..|..|
T Consensus 234 ~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l 307 (347)
T 4fmz_A 234 TDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVI 307 (347)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHH
T ss_pred CCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHh
Confidence 76554 77788888888888888765 3578888999999999999865 468889999999999999998889999
Q ss_pred hcccccCeEecCCCcccCCCCcccccccccccccccccccc
Q 001988 582 GNMTSLESLDLSNNKISGSIPVSFEKLSYLKELNLSFNKLK 622 (985)
Q Consensus 582 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 622 (985)
.++++|++|+|++|++++..| +..+++|++|++++|+++
T Consensus 308 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 308 GGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999999999999997666 888999999999999886
No 175
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=4e-35 Score=319.30 Aligned_cols=246 Identities=24% Similarity=0.380 Sum_probs=204.3
Q ss_pred HhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeec---------
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSN--------- 793 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~--------- 793 (985)
..++|+..+.||+|+||.||+|+.. +++.||+|+++... ..+.+|++++++++||||+++++++..
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~ 84 (284)
T 2a19_B 9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSS 84 (284)
T ss_dssp HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-----
T ss_pred hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccc
Confidence 4567999999999999999999976 79999999997553 356789999999999999999998854
Q ss_pred -------CCceEEEEeccCCCChHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcE
Q 001988 794 -------DDFKALVLEYMSNGSLEDCLHSS-NCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVA 865 (985)
Q Consensus 794 -------~~~~~lv~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~ 865 (985)
....++||||+++|+|.+++... ...+++..+..++.|++.||+|| |++||+||||||+||++++++.+
T Consensus 85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~l---H~~~i~H~dlkp~Nil~~~~~~~ 161 (284)
T 2a19_B 85 KNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYI---HSKKLINRDLKPSNIFLVDTKQV 161 (284)
T ss_dssp ----CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEEEETTEE
T ss_pred ccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHH---HhCCeeeccCCHHHEEEcCCCCE
Confidence 34578999999999999999754 34689999999999999999999 78899999999999999999999
Q ss_pred EEecccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh-------hH
Q 001988 866 HLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA-------AK 938 (985)
Q Consensus 866 kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~-------~~ 938 (985)
||+|||+++....... .....||+.|+|||.+.+..++.++|+ |++|+++++++++..+........ .+
T Consensus 162 kl~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~~l~~~~~~~~~~~~~~~~~~~~~~~ 237 (284)
T 2a19_B 162 KIGDFGLVTSLKNDGK---RTRSKGTLRYMSPEQISSQDYGKEVDL-YALGLILAELLHVCDTAFETSKFFTDLRDGIIS 237 (284)
T ss_dssp EECCCTTCEESSCCSC---CCCCCSCCTTSCHHHHHCSCCCTHHHH-HHHHHHHHHHHSCCSSHHHHHHHHHHHHTTCCC
T ss_pred EECcchhheecccccc---ccccCCcccccChhhhccCCCcchhhh-HHHHHHHHHHHhcCCcchhHHHHHHHhhccccc
Confidence 9999999988753322 233469999999999999999999999 999999999998765432211100 11
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhccc
Q 001988 939 EQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLSKR 980 (985)
Q Consensus 939 ~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~~~ 980 (985)
..++.++.+++.+||+.||.+||++.|+++.+..+++...+.
T Consensus 238 ~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~~~~ 279 (284)
T 2a19_B 238 DIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPEKN 279 (284)
T ss_dssp TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC-----
T ss_pred ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCCCcc
Confidence 224567889999999999999999999999999998776543
No 176
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=1.1e-34 Score=321.79 Aligned_cols=236 Identities=21% Similarity=0.278 Sum_probs=203.2
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcc------hHHHHHHHHHHHHhcCCCCeeeEEeeeecCCce
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCAS------TLKSFEAECEVIKNIRHRNLVKIISSCSNDDFK 797 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~------~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~ 797 (985)
.++|...+.||+|+||.||+|+.. +++.||+|++...... ..+.+.+|++++++++||||+++++++.+.+..
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 90 (321)
T 2a2a_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV 90 (321)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence 467899999999999999999975 7899999999765322 356789999999999999999999999999999
Q ss_pred EEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCC----cEEEecccCc
Q 001988 798 ALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDM----VAHLSDFGMA 873 (985)
Q Consensus 798 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~----~~kl~DfGla 873 (985)
++||||+++++|.+++.... .+++..+..++.|++.||+|| |++||+||||||+||+++.++ .+||+|||++
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~l---H~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~ 166 (321)
T 2a2a_A 91 VLILELVSGGELFDFLAQKE-SLSEEEATSFIKQILDGVNYL---HTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLA 166 (321)
T ss_dssp EEEECCCCSCBHHHHHHTCS-CEEHHHHHHHHHHHHHHHHHH---HHTTEECCCCSGGGEEESCTTSSSCCEEECCCTTC
T ss_pred EEEEEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HhCCeecCCCChHHEEEecCCCCcCCEEEccCccc
Confidence 99999999999999998653 688999999999999999999 788999999999999999888 7999999999
Q ss_pred eeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh---------------hH
Q 001988 874 KLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA---------------AK 938 (985)
Q Consensus 874 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~---------------~~ 938 (985)
+...... ......||+.|+|||.+.+..++.++|+ |++|+++++++++..+........ ..
T Consensus 167 ~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Di-~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~ 242 (321)
T 2a2a_A 167 HEIEDGV---EFKNIFGTPEFVAPEIVNYEPLGLEADM-WSIGVITYILLSGASPFLGDTKQETLANITSVSYDFDEEFF 242 (321)
T ss_dssp EECCTTC---CCCCCCSCGGGCCHHHHTTCCCCTHHHH-HHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHH
T ss_pred eecCccc---cccccCCCCCccCcccccCCCCCCcccc-HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccccChhhh
Confidence 8865322 2234569999999999999999999999 999999999999887654332111 11
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 939 EQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 939 ~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
...++.+.+++.+|+..||++||++.|+++
T Consensus 243 ~~~~~~~~~li~~~l~~dp~~Rps~~e~l~ 272 (321)
T 2a2a_A 243 SHTSELAKDFIRKLLVKETRKRLTIQEALR 272 (321)
T ss_dssp TTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred cccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 234577899999999999999999999986
No 177
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=2.5e-35 Score=349.11 Aligned_cols=250 Identities=26% Similarity=0.388 Sum_probs=210.7
Q ss_pred HHHHhcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEE
Q 001988 721 LLRATDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 721 ~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv 800 (985)
+....++|+..+.||+|+||.||+|.+.++..||||+++... ...+.+.+|++++++++||||+++++++.+ +..++|
T Consensus 262 ~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv 339 (535)
T 2h8h_A 262 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIV 339 (535)
T ss_dssp SBCCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEE
T ss_pred eecchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEe
Confidence 334567889999999999999999999888899999998654 345689999999999999999999999976 678999
Q ss_pred EeccCCCChHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCC
Q 001988 801 LEYMSNGSLEDCLHSS-NCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGE 879 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~ 879 (985)
|||+++|+|.+++... +..+++..+..++.||+.||+|| |+++|+||||||+|||+++++.+||+|||+++.+...
T Consensus 340 ~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~L---H~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~ 416 (535)
T 2h8h_A 340 TEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYV---ERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDN 416 (535)
T ss_dssp ECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCH
T ss_pred eehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHH---HhCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCC
Confidence 9999999999999754 34689999999999999999999 7899999999999999999999999999999876421
Q ss_pred CCcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhh------------hhHHHHHHHHH
Q 001988 880 DESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHF------------AAKEQCLLSIF 946 (985)
Q Consensus 880 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~------------~~~~~~~~~l~ 946 (985)
.........++..|+|||.+..+.++.++|+ |++|++++++++ +..++...... ..+..+++++.
T Consensus 417 -~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv-wSlGv~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~ 494 (535)
T 2h8h_A 417 -EYTARQGAKFPIKWTAPEAALYGRFTIKSDV-WSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLH 494 (535)
T ss_dssp -HHHTTCSTTSCGGGSCHHHHHHCCCCHHHHH-HHHHHHHHHHTTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHH
T ss_pred -ceecccCCcCcccccCHHHhccCCCCchhhH-HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHH
Confidence 1111223447789999999999999999999 999999999998 66654432111 12234678899
Q ss_pred HHHHHccCCCCCCCCCHHHHHHHHHHhHhhh
Q 001988 947 SLALECTMESPEKRIDAKDTITRLLKIRDTL 977 (985)
Q Consensus 947 ~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~ 977 (985)
++|.+||..||++||++.++++.|+.+....
T Consensus 495 ~li~~cl~~dP~~RPt~~~l~~~L~~~~~~~ 525 (535)
T 2h8h_A 495 DLMCQCWRKEPEERPTFEYLQAFLEDYFTST 525 (535)
T ss_dssp HHHHHHTCSSGGGSCCHHHHHHHHHTSSCCC
T ss_pred HHHHHHcCCChhHCcCHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999876543
No 178
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=7.4e-35 Score=321.61 Aligned_cols=249 Identities=25% Similarity=0.334 Sum_probs=198.8
Q ss_pred hcCccCCceeeccCceeEEEEEE-cCCcEEEEEEeccCC---cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARL-EDGVEIAIKVFHPQC---ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vAvK~~~~~~---~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv 800 (985)
.++|+..+.||+|+||.||+|.. .+++.||+|+++... ......+.+|++++++++||||+++++++...+..++|
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv 110 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV 110 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence 46789999999999999999986 479999999997532 23456788999999999999999999999999999999
Q ss_pred EeccCCCChHHHhhc---CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceecc
Q 001988 801 LEYMSNGSLEDCLHS---SNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLS 877 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~---~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~ 877 (985)
|||+++|+|.+++.. ....+++..+..++.|++.||+|| |+.||+||||||+||+++.++.+||+|||+++...
T Consensus 111 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~L---H~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~ 187 (310)
T 2wqm_A 111 LELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHM---HSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFS 187 (310)
T ss_dssp EECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH---HHTTCCCCCCCGGGEEECTTSCEEECCC-------
T ss_pred EecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHH---hhCCeeCCCCcHHHEEEcCCCCEEEEeccceeeec
Confidence 999999999999864 345689999999999999999999 78999999999999999999999999999998764
Q ss_pred CCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh--h-------------hHHHHH
Q 001988 878 GEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF--A-------------AKEQCL 942 (985)
Q Consensus 878 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~--~-------------~~~~~~ 942 (985)
... .......|++.|+|||.+.+..++.++|+ |++|+++++++++..+....... . ....++
T Consensus 188 ~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv-~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (310)
T 2wqm_A 188 SKT--TAAHSLVGTPYYMSPERIHENGYNFKSDI-WSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQCDYPPLPSDHYS 264 (310)
T ss_dssp -------------CCSSCCHHHHTTCCCCHHHHH-HHHHHHHHHHHHSSCTTC---CCHHHHHHHHHTTCSCCCCTTTSC
T ss_pred CCC--ccccccCCCeeEeChHHhCCCCCCchhhH-HHHHHHHHHHHhCCCCCcccchhHHHHHHHhhcccCCCCcccccC
Confidence 322 12234568999999999999999999999 99999999999988755322100 0 012356
Q ss_pred HHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhcc
Q 001988 943 LSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLSK 979 (985)
Q Consensus 943 ~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~~ 979 (985)
+++.+++.+||..||.+||++.++++.+++++.....
T Consensus 265 ~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~~ 301 (310)
T 2wqm_A 265 EELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTAS 301 (310)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhhh
Confidence 7899999999999999999999999999999876543
No 179
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=4.5e-35 Score=318.09 Aligned_cols=237 Identities=23% Similarity=0.286 Sum_probs=199.9
Q ss_pred HhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc---chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEE
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA---STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKAL 799 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~---~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~l 799 (985)
+.++|+..+.||+|+||.||+|... +++.||+|++..... .....+.+|++++++++||||+++++++.+.+..++
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 86 (279)
T 3fdn_A 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL 86 (279)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEE
Confidence 3578999999999999999999865 677899999865421 224678899999999999999999999999999999
Q ss_pred EEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCC
Q 001988 800 VLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGE 879 (985)
Q Consensus 800 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~ 879 (985)
||||+++|+|.+++.... .+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||++......
T Consensus 87 v~e~~~~~~l~~~l~~~~-~~~~~~~~~~~~qi~~~l~~L---H~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~ 162 (279)
T 3fdn_A 87 ILEYAPLGTVYRELQKLS-KFDEQRTATYITELANALSYC---HSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSS 162 (279)
T ss_dssp EECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHH---HTTTCEECCCCGGGEEECTTSCEEECSCCEESCC---
T ss_pred EEecCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HhCCEecccCChHhEEEcCCCCEEEEeccccccCCcc
Confidence 999999999999997654 689999999999999999999 7899999999999999999999999999998654321
Q ss_pred CCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhhh-----------HHHHHHHHHHH
Q 001988 880 DESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA-----------KEQCLLSIFSL 948 (985)
Q Consensus 880 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~l~~l 948 (985)
......||+.|+|||.+.+..++.++|+ |++|+++++++++..+......... +..+++++.++
T Consensus 163 ----~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 237 (279)
T 3fdn_A 163 ----RRTDLCGTLDYLPPEMIEGRMHDEKVDL-WSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDL 237 (279)
T ss_dssp ---------CCCCTTCCHHHHTTCCCCTTHHH-HHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCTTSCHHHHHH
T ss_pred ----cccccCCCCCccCHhHhccCCCCccchh-HhHHHHHHHHHHCCCCCCCCcHHHHHHHHHhCCCCCCCcCCHHHHHH
Confidence 2234569999999999999999999999 9999999999998876654322111 12245778999
Q ss_pred HHHccCCCCCCCCCHHHHHHH
Q 001988 949 ALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 949 ~~~cl~~~P~~RPt~~ev~~~ 969 (985)
+.+||..||.+||++.|+++.
T Consensus 238 i~~~l~~~p~~Rps~~e~l~h 258 (279)
T 3fdn_A 238 ISRLLKHNPSQRPMLREVLEH 258 (279)
T ss_dssp HHHHCCSSGGGSCCHHHHHHC
T ss_pred HHHHhccChhhCCCHHHHhhC
Confidence 999999999999999999975
No 180
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=1.2e-34 Score=315.49 Aligned_cols=237 Identities=23% Similarity=0.322 Sum_probs=202.8
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc--chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA--STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVL 801 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~ 801 (985)
.++|+..+.||+|+||.||+|... +++.||+|++..... ...+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 84 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 84 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence 578999999999999999999875 689999999975532 34567889999999999999999999999999999999
Q ss_pred eccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCc---EEEecccCceeccC
Q 001988 802 EYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMV---AHLSDFGMAKLLSG 878 (985)
Q Consensus 802 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~---~kl~DfGla~~~~~ 878 (985)
||+++++|.+.+.... .+++..+..++.|++.||+|| |+.||+||||||+||+++.++. +||+|||++.....
T Consensus 85 e~~~~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~l~~l---H~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~ 160 (284)
T 3kk8_A 85 DLVTGGELFEDIVARE-FYSEADASHCIQQILESIAYC---HSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND 160 (284)
T ss_dssp CCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCS
T ss_pred ecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HHCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEccc
Confidence 9999999999887654 689999999999999999999 7899999999999999987665 99999999987643
Q ss_pred CCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh---------------hHHHHHH
Q 001988 879 EDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA---------------AKEQCLL 943 (985)
Q Consensus 879 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~---------------~~~~~~~ 943 (985)
.. ......||+.|+|||.+.+..++.++|+ |++|+++++++++..+........ ....+++
T Consensus 161 ~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (284)
T 3kk8_A 161 SE---AWHGFAGTPGYLSPEVLKKDPYSKPVDI-WACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTP 236 (284)
T ss_dssp SC---BCCCSCSCGGGCCHHHHTTCCBCTHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTSCH
T ss_pred Cc---cccCCCCCcCCcCchhhcCCCCCcccch-HHHHHHHHHHHHCCCCCCCCchhHHHHHHHhccccCCchhhcccCH
Confidence 22 2234569999999999999999999999 999999999999887654332111 1123567
Q ss_pred HHHHHHHHccCCCCCCCCCHHHHHHH
Q 001988 944 SIFSLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 944 ~l~~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
++.+++.+|++.||++||++.|+++.
T Consensus 237 ~~~~li~~~l~~dp~~Rps~~~~l~h 262 (284)
T 3kk8_A 237 EAKSLIDSMLTVNPKKRITADQALKV 262 (284)
T ss_dssp HHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred HHHHHHHHHcccChhhCCCHHHHhcC
Confidence 89999999999999999999999873
No 181
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=3e-35 Score=319.25 Aligned_cols=238 Identities=22% Similarity=0.343 Sum_probs=183.9
Q ss_pred hcCccCCceeeccCceeEEEEEE-cCCcEEEEEEeccCCc---chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARL-EDGVEIAIKVFHPQCA---STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vAvK~~~~~~~---~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv 800 (985)
.++|...+.||+|+||.||+|+. .+++.||+|++..... .....+.+|++++++++||||+++++++.+.+..++|
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV 89 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence 46789999999999999999987 4799999999865421 2246789999999999999999999999999999999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCC
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGED 880 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~ 880 (985)
|||+++++|.+++......+++..+..++.|+++||+|| |++||+||||||+||+++.++.+||+|||++.......
T Consensus 90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~l---H~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~ 166 (278)
T 3cok_A 90 LEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYL---HSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPH 166 (278)
T ss_dssp EECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHH---HHTTEECSSCCGGGEEECTTCCEEECCCTTCEECC---
T ss_pred EecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH---HHCCeecCCCCHHHEEEcCCCCEEEEeecceeeccCCC
Confidence 999999999999988766789999999999999999999 78899999999999999999999999999998764322
Q ss_pred CcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchh-----------hhhHHHHHHHHHHHH
Q 001988 881 ESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKH-----------FAAKEQCLLSIFSLA 949 (985)
Q Consensus 881 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~-----------~~~~~~~~~~l~~l~ 949 (985)
. ......||+.|+|||.+.+..++.++|+ |++|+++++++++..+...... ...+..++.++.+++
T Consensus 167 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 243 (278)
T 3cok_A 167 E--KHYTLCGTPNYISPEIATRSAHGLESDV-WSLGCMFYTLLIGRPPFDTDTVKNTLNKVVLADYEMPSFLSIEAKDLI 243 (278)
T ss_dssp ---------------------------CTHH-HHHHHHHHHHHHSSCSSCCCSCC-----CCSSCCCCCTTSCHHHHHHH
T ss_pred C--cceeccCCCCcCCcchhcCCCCCchhhH-HHHHHHHHHHHhCCCCCCChhHHHHHHHHhhcccCCccccCHHHHHHH
Confidence 2 2233568999999999999999999999 9999999999998876543211 111233567799999
Q ss_pred HHccCCCCCCCCCHHHHHH
Q 001988 950 LECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 950 ~~cl~~~P~~RPt~~ev~~ 968 (985)
.+|+..||++||++.++++
T Consensus 244 ~~~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 244 HQLLRRNPADRLSLSSVLD 262 (278)
T ss_dssp HHHSCSSGGGSCCHHHHTT
T ss_pred HHHcccCHhhCCCHHHHhc
Confidence 9999999999999999986
No 182
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=6.4e-35 Score=329.37 Aligned_cols=245 Identities=24% Similarity=0.274 Sum_probs=205.2
Q ss_pred ccccCHHHHHHHhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcC-----CCCeee
Q 001988 713 IRRFSYFELLRATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIR-----HRNLVK 786 (985)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~-----h~niv~ 786 (985)
...+++.+.....++|...+.||+|+||.||+|+.. +++.||||+++.. ......+..|++++++++ ||||++
T Consensus 22 ~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~ 100 (360)
T 3llt_A 22 IVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVK 100 (360)
T ss_dssp GGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCC
T ss_pred ceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeec
Confidence 445555666667789999999999999999999974 7899999999743 334566788999999996 999999
Q ss_pred EEeeeecCCceEEEEeccCCCChHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcC----
Q 001988 787 IISSCSNDDFKALVLEYMSNGSLEDCLHSSN-CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDE---- 861 (985)
Q Consensus 787 l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~---- 861 (985)
+++++...+..++||||+ +++|.+++.... ..+++..+..++.|++.||+|| |++||+||||||+||+++.
T Consensus 101 ~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~L---H~~~ivHrDlkp~NIll~~~~~~ 176 (360)
T 3llt_A 101 YHGKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYL---RKMSLTHTDLKPENILLDDPYFE 176 (360)
T ss_dssp EEEEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEESCTTCC
T ss_pred ccceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH---HHCCeeeCCCCcccEEEcccccc
Confidence 999999999999999999 999999998763 3589999999999999999999 7899999999999999975
Q ss_pred ---------------------CCcEEEecccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchh
Q 001988 862 ---------------------DMVAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLV 920 (985)
Q Consensus 862 ---------------------~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~ 920 (985)
++.+||+|||+++...... ....||+.|+|||.+.+..++.++|+ |++|++++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~Di-wslG~il~ 250 (360)
T 3llt_A 177 KSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYH-----GSIINTRQYRAPEVILNLGWDVSSDM-WSFGCVLA 250 (360)
T ss_dssp EEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCC-----CSCCSCGGGCCHHHHTTCCCCTTHHH-HHHHHHHH
T ss_pred ccccchhcccccccccccccCCCCEEEEeccCceecCCCC-----cCccCcccccCcHHHcCCCCCCccch-HHHHHHHH
Confidence 8899999999998754222 24569999999999999999999999 99999999
Q ss_pred hhcccccccCcchhhhhH---------------------------------------------------------HHHHH
Q 001988 921 EVVDKSLLSGEEKHFAAK---------------------------------------------------------EQCLL 943 (985)
Q Consensus 921 ~i~~~~~~~~~~~~~~~~---------------------------------------------------------~~~~~ 943 (985)
+++++..++......... ....+
T Consensus 251 ell~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (360)
T 3llt_A 251 ELYTGSLLFRTHEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHE 330 (360)
T ss_dssp HHHHSSCSCCCSSHHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCH
T ss_pred HHHHCCCCCCCCcHHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccccchHH
Confidence 999998765432111100 00115
Q ss_pred HHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 944 SIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 944 ~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
.+.+++.+||+.||.+|||+.|+++
T Consensus 331 ~l~~li~~~L~~dP~~Rpta~elL~ 355 (360)
T 3llt_A 331 LFCDFLYSILQIDPTLRPSPAELLK 355 (360)
T ss_dssp HHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHHhcCChhhCCCHHHHhc
Confidence 6779999999999999999999874
No 183
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=6.7e-35 Score=333.06 Aligned_cols=245 Identities=22% Similarity=0.280 Sum_probs=206.2
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC-cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCC--ceEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC-ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDD--FKALV 800 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~-~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~--~~~lv 800 (985)
.++|...+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++.+.+ ..++|
T Consensus 8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv 87 (396)
T 4eut_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (396)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEE
Confidence 467899999999999999999976 68999999997543 233567889999999999999999999998765 67999
Q ss_pred EeccCCCChHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEE----cCCCcEEEecccCce
Q 001988 801 LEYMSNGSLEDCLHSSN--CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLL----DEDMVAHLSDFGMAK 874 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~--~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill----~~~~~~kl~DfGla~ 874 (985)
|||+++|+|.+++.... ..+++..++.++.|++.||+|| |++||+||||||+||++ +.++.+||+|||+++
T Consensus 88 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~L---H~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~ 164 (396)
T 4eut_A 88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHL---RENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR 164 (396)
T ss_dssp ECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCE
T ss_pred EecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHH---HHCCEEECCcCHHHEEEeecCCCceeEEEecCCCce
Confidence 99999999999998653 2389999999999999999999 78999999999999999 788889999999998
Q ss_pred eccCCCCcceeccccccccccccccccc--------CccchhhhcccccccchhhhcccccccCcchh------------
Q 001988 875 LLSGEDESTMRTQTLATIGYMAPDEIFV--------GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKH------------ 934 (985)
Q Consensus 875 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~------------ 934 (985)
...... ......||+.|+|||.+.. ..++.++|+ |++|+++++++++..++.....
T Consensus 165 ~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~Di-wSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~ 240 (396)
T 4eut_A 165 ELEDDE---QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDL-WSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKII 240 (396)
T ss_dssp ECCCGG---GSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHH-HHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHH
T ss_pred EccCCC---ccccccCCccccCHHHhhccccccccccCCCcHHHH-HHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHh
Confidence 864322 2334569999999998865 677889999 9999999999998876532110
Q ss_pred ----------------------------hhhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhh
Q 001988 935 ----------------------------FAAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDT 976 (985)
Q Consensus 935 ----------------------------~~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~ 976 (985)
....+..+..+.+++.+||..||++||++.|+++.+.++.+.
T Consensus 241 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~ 310 (396)
T 4eut_A 241 TGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR 310 (396)
T ss_dssp HSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTC
T ss_pred cCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhc
Confidence 001245677899999999999999999999999999888764
No 184
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=4.6e-35 Score=324.99 Aligned_cols=228 Identities=20% Similarity=0.240 Sum_probs=177.5
Q ss_pred CceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcC-CCCeeeEEeeeecCCceEEEEeccCCCC
Q 001988 731 NNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIR-HRNLVKIISSCSNDDFKALVLEYMSNGS 808 (985)
Q Consensus 731 ~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~gs 808 (985)
.+.||+|+||.||+|... +++.||||++... ....+.+|+.+++++. ||||+++++++.+.+..++||||+++|+
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~ 92 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE 92 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCc
Confidence 578999999999999975 7899999998643 3467789999999997 9999999999999999999999999999
Q ss_pred hHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCC---cEEEecccCceeccCCCCccee
Q 001988 809 LEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDM---VAHLSDFGMAKLLSGEDESTMR 885 (985)
Q Consensus 809 L~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~---~~kl~DfGla~~~~~~~~~~~~ 885 (985)
|.+++.... .+++.++..++.|++.||+|| |++||+||||||+||+++.++ .+||+|||+++...... ...
T Consensus 93 L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~L---H~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~--~~~ 166 (325)
T 3kn6_A 93 LFERIKKKK-HFSETEASYIMRKLVSAVSHM---HDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDN--QPL 166 (325)
T ss_dssp HHHHHHHCS-CCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC-------
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HHCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCC--Ccc
Confidence 999998764 689999999999999999999 789999999999999998766 89999999998764322 223
Q ss_pred cccccccccccccccccCccchhhhcccccccchhhhcccccccCcchh----------------------hhhHHHHHH
Q 001988 886 TQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKH----------------------FAAKEQCLL 943 (985)
Q Consensus 886 ~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~----------------------~~~~~~~~~ 943 (985)
...+||+.|+|||.+.+..++.++|+ |++|+++++++++..++..... ......+++
T Consensus 167 ~~~~~t~~y~aPE~~~~~~~~~~~Di-wslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~ 245 (325)
T 3kn6_A 167 KTPCFTLHYAAPELLNQNGYDESCDL-WSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEGEAWKNVSQ 245 (325)
T ss_dssp -----------------CCCCHHHHH-HHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCCCCSHHHHTSCH
T ss_pred cccCCCcCccCHHHhcCCCCCCccch-HHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCCCCcccccCCCH
Confidence 34568999999999999999999999 9999999999998876543211 011133577
Q ss_pred HHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 944 SIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 944 ~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
++.+++.+|+..||.+||++.|+++
T Consensus 246 ~~~~li~~~L~~dP~~Rpt~~ell~ 270 (325)
T 3kn6_A 246 EAKDLIQGLLTVDPNKRLKMSGLRY 270 (325)
T ss_dssp HHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred HHHHHHHHHCCCChhHCCCHHHHhc
Confidence 8999999999999999999998863
No 185
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=6.6e-35 Score=316.05 Aligned_cols=234 Identities=23% Similarity=0.314 Sum_probs=179.7
Q ss_pred cCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc---chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEE
Q 001988 726 DNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA---STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVL 801 (985)
Q Consensus 726 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~---~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~ 801 (985)
++|+..+.||+|+||.||+|+.. +++.||+|++..... ...+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEEE
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEEe
Confidence 67999999999999999999864 789999999976532 23567889999999999999999999999999999999
Q ss_pred eccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCC
Q 001988 802 EYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDE 881 (985)
Q Consensus 802 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 881 (985)
||+ ++++.+++.... .+++..+..++.|++.||+|| |++||+||||||+||++++++.+||+|||+++......
T Consensus 93 e~~-~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~l~~L---H~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~- 166 (275)
T 2eue_A 93 EYA-GNELFDYIVQRD-KMSEQEARRFFQQIISAVEYC---HRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGN- 166 (275)
T ss_dssp ECC-CEEHHHHHHTSS-SCCHHHHHHHHHHHHHHHHHH---HHTTCCCCCCSGGGEEECTTSCEEECCSSCC--------
T ss_pred hhc-CCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HHCCCeeccCChHhEEECCCCCEEEeecccceeccCcc-
Confidence 999 778888887654 689999999999999999999 78899999999999999999999999999998764322
Q ss_pred cceecccccccccccccccccCcc-chhhhcccccccchhhhcccccccCcchhhh-----------hHHHHHHHHHHHH
Q 001988 882 STMRTQTLATIGYMAPDEIFVGEL-SLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA-----------AKEQCLLSIFSLA 949 (985)
Q Consensus 882 ~~~~~~~~gt~~y~aPE~~~~~~~-~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~l~~l~ 949 (985)
......||+.|+|||.+.+..+ +.++|+ |++|++++++++++.+........ .+..+++++.+++
T Consensus 167 --~~~~~~~t~~y~aPE~~~~~~~~~~~~Di-~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 243 (275)
T 2eue_A 167 --FLKTSCGSPNYAAPEVISGKLYAGPEVDV-WSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPKFLSPGAAGLI 243 (275)
T ss_dssp ----------CTTCCHHHHCC-----THHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHH
T ss_pred --cccCCCCCcCcCCceeeeCCCCCCcccch-HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHHH
Confidence 2234469999999999887765 688999 999999999999987765432211 1123467799999
Q ss_pred HHccCCCCCCCCCHHHHHH
Q 001988 950 LECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 950 ~~cl~~~P~~RPt~~ev~~ 968 (985)
.+|++.||.+||++.|+++
T Consensus 244 ~~~l~~dP~~Rps~~e~l~ 262 (275)
T 2eue_A 244 KRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp HHHSCSSGGGSCCHHHHTT
T ss_pred HHHhhcCHhHCCCHHHHhh
Confidence 9999999999999999975
No 186
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=318.71 Aligned_cols=237 Identities=25% Similarity=0.342 Sum_probs=195.2
Q ss_pred HhcCccCCceeeccCceeEEEEEE-cCCcEEEEEEeccCCc-----chHHHHHHHHHHHHhcC---CCCeeeEEeeeecC
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARL-EDGVEIAIKVFHPQCA-----STLKSFEAECEVIKNIR---HRNLVKIISSCSND 794 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vAvK~~~~~~~-----~~~~~~~~E~~il~~l~---h~niv~l~~~~~~~ 794 (985)
..++|+..+.||+|+||.||+|+. .+++.||||++..... .....+.+|++++++++ ||||+++++++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 467899999999999999999996 4789999999874321 12346778888887774 99999999999775
Q ss_pred C-----ceEEEEeccCCCChHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEe
Q 001988 795 D-----FKALVLEYMSNGSLEDCLHSSN-CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLS 868 (985)
Q Consensus 795 ~-----~~~lv~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~ 868 (985)
. ..++||||++ |+|.+++.... ..+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~l---H~~~ivH~Dlkp~Nil~~~~~~~kl~ 162 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFL---HANCIVHRDLKPENILVTSGGTVKLA 162 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCCTTTEEECTTSCEEEC
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHH---HHCCcccCCCCHHHEEEcCCCCEEEe
Confidence 5 4789999996 59999998764 3489999999999999999999 78999999999999999999999999
Q ss_pred cccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhhhH----------
Q 001988 869 DFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAAK---------- 938 (985)
Q Consensus 869 DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~~---------- 938 (985)
|||+++.+.... ......||+.|+|||.+.+..++.++|+ |++|+++++++++..++.........
T Consensus 163 Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Di-wslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~ 238 (308)
T 3g33_A 163 DFGLARIYSYQM---ALTPVVVTLWYRAPEVLLQSTYATPVDM-WSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLP 238 (308)
T ss_dssp SCSCTTTSTTCC---CSGGGGCCCSSCCHHHHHTSCCCSTHHH-HHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCC
T ss_pred eCccccccCCCc---ccCCccccccccCchHHcCCCCCchHHH-HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCC
Confidence 999998764222 2344679999999999999999999999 99999999999988765433221111
Q ss_pred ----------------------------HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 939 ----------------------------EQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 939 ----------------------------~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
.++++++.+++.+|+..||++|||+.|+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 296 (308)
T 3g33_A 239 PEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ 296 (308)
T ss_dssp CTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence 123467889999999999999999999876
No 187
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.2e-35 Score=328.88 Aligned_cols=238 Identities=24% Similarity=0.295 Sum_probs=202.6
Q ss_pred HhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcc--------hHHHHHHHHHHHHhcCCCCeeeEEeeeecC
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCAS--------TLKSFEAECEVIKNIRHRNLVKIISSCSND 794 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~--------~~~~~~~E~~il~~l~h~niv~l~~~~~~~ 794 (985)
..++|...+.||+|+||.||+|+.. +++.||||+++..... ....+.+|++++++++||||+++++++.+.
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~ 101 (335)
T 3dls_A 22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ 101 (335)
T ss_dssp HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence 4578999999999999999999864 7899999999765321 234577899999999999999999999999
Q ss_pred CceEEEEeccCCC-ChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCc
Q 001988 795 DFKALVLEYMSNG-SLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMA 873 (985)
Q Consensus 795 ~~~~lv~e~~~~g-sL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla 873 (985)
+..++||||+.+| +|.+++.... .+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||++
T Consensus 102 ~~~~lv~e~~~~g~~l~~~~~~~~-~l~~~~~~~i~~qi~~~L~~L---H~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a 177 (335)
T 3dls_A 102 GFFQLVMEKHGSGLDLFAFIDRHP-RLDEPLASYIFRQLVSAVGYL---RLKDIIHRDIKDENIVIAEDFTIKLIDFGSA 177 (335)
T ss_dssp SEEEEEEECCTTSCBHHHHHHTCC-CCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEECTTSCEEECCCTTC
T ss_pred CEEEEEEEeCCCCccHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HhCCeEEeccCHHHEEEcCCCcEEEeecccc
Confidence 9999999999777 9999988654 689999999999999999999 7889999999999999999999999999999
Q ss_pred eeccCCCCcceecccccccccccccccccCcc-chhhhcccccccchhhhcccccccCcchhh-----hhHHHHHHHHHH
Q 001988 874 KLLSGEDESTMRTQTLATIGYMAPDEIFVGEL-SLKRWVNDLLPVSLVEVVDKSLLSGEEKHF-----AAKEQCLLSIFS 947 (985)
Q Consensus 874 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~-----~~~~~~~~~l~~ 947 (985)
+.+..... .....||+.|+|||.+.+..+ +.++|+ |++|+++++++++..++...... ..+..+++++.+
T Consensus 178 ~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~Di-wslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~l~~ 253 (335)
T 3dls_A 178 AYLERGKL---FYTFCGTIEYCAPEVLMGNPYRGPELEM-WSLGVTLYTLVFEENPFCELEETVEAAIHPPYLVSKELMS 253 (335)
T ss_dssp EECCTTCC---BCEECSCGGGCCHHHHTTCCBCSHHHHH-HHHHHHHHHHHHSSCSCSSGGGGTTTCCCCSSCCCHHHHH
T ss_pred eECCCCCc---eeccCCCccccChhhhcCCCCCCCcccc-hhHHHHHHHHHhCCCchhhHHHHHhhccCCCcccCHHHHH
Confidence 88653322 234569999999999988877 788899 99999999999988765442211 112235677999
Q ss_pred HHHHccCCCCCCCCCHHHHHHH
Q 001988 948 LALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 948 l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
++.+||..||++||++.|+++.
T Consensus 254 li~~~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 254 LVSGLLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp HHHHHTCSSGGGSCCHHHHHHC
T ss_pred HHHHHccCChhhCcCHHHHhcC
Confidence 9999999999999999999874
No 188
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=1.5e-34 Score=316.07 Aligned_cols=247 Identities=21% Similarity=0.285 Sum_probs=203.4
Q ss_pred hcCccCCc-eeeccCceeEEEEEEc---CCcEEEEEEeccCCc--chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceE
Q 001988 725 TDNFAENN-IIGIGGFGSVYRARLE---DGVEIAIKVFHPQCA--STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKA 798 (985)
Q Consensus 725 ~~~~~~~~-~ig~G~~g~V~~~~~~---~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~ 798 (985)
.++|...+ .||+|+||.||+|.+. +++.||||+++.... ...+.+.+|++++++++||||+++++++ ..+..+
T Consensus 15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~ 93 (291)
T 1xbb_A 15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWM 93 (291)
T ss_dssp GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEE
T ss_pred chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcE
Confidence 45677777 9999999999999642 568899999976532 2356789999999999999999999999 556789
Q ss_pred EEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccC
Q 001988 799 LVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSG 878 (985)
Q Consensus 799 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~ 878 (985)
+||||+++++|.+++.... .+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++....
T Consensus 94 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~L---H~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~ 169 (291)
T 1xbb_A 94 LVMEMAELGPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYL---EESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRA 169 (291)
T ss_dssp EEEECCTTEEHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCT
T ss_pred EEEEeCCCCCHHHHHHhCc-CCCHHHHHHHHHHHHHHHHHH---HhCCeEcCCCCcceEEEeCCCcEEEccCCcceeecc
Confidence 9999999999999998754 689999999999999999999 788999999999999999999999999999988754
Q ss_pred CCCcc-eecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhhh------------hHHHHHHH
Q 001988 879 EDEST-MRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHFA------------AKEQCLLS 944 (985)
Q Consensus 879 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~~------------~~~~~~~~ 944 (985)
..... ......+++.|+|||.+.+..++.++|+ |++|++++++++ +..+........ .+..++++
T Consensus 170 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (291)
T 1xbb_A 170 DENYYKAQTHGKWPVKWYAPECINYYKFSSKSDV-WSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPRE 248 (291)
T ss_dssp TCSEEEC----CCCGGGCCHHHHHHCEEEHHHHH-HHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHH
T ss_pred CCCcccccccCCCCceeeChHHhccCCCChhhhH-HHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHH
Confidence 33322 1223346789999999999999999999 999999999998 776654332111 12335678
Q ss_pred HHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhh
Q 001988 945 IFSLALECTMESPEKRIDAKDTITRLLKIRDTL 977 (985)
Q Consensus 945 l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~ 977 (985)
+.+++.+||..||.+||++.++++.|+++-...
T Consensus 249 l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~ 281 (291)
T 1xbb_A 249 MYDLMNLCWTYDVENRPGFAAVELRLRNYYYDV 281 (291)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887543
No 189
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=8.4e-35 Score=315.37 Aligned_cols=240 Identities=22% Similarity=0.292 Sum_probs=204.1
Q ss_pred HhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC-cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEE
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC-ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVL 801 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~-~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~ 801 (985)
..++|+..+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|+.++++++||||+++++++.+.+..++||
T Consensus 5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 84 (276)
T 2yex_A 5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFL 84 (276)
T ss_dssp HHHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred eecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEE
Confidence 4578999999999999999999976 78999999987543 334577899999999999999999999999999999999
Q ss_pred eccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCC
Q 001988 802 EYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDE 881 (985)
Q Consensus 802 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 881 (985)
||+++++|.+++... ..+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||.+..+.....
T Consensus 85 e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~i~~~l~~l---H~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~ 160 (276)
T 2yex_A 85 EYCSGGELFDRIEPD-IGMPEPDAQRFFHQLMAGVVYL---HGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNR 160 (276)
T ss_dssp ECCTTEEGGGGSBTT-TBCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTE
T ss_pred EecCCCcHHHHHhhc-cCCCHHHHHHHHHHHHHHHHHH---HhCCeeccCCChHHEEEccCCCEEEeeCCCccccCCCcc
Confidence 999999999998764 3689999999999999999999 789999999999999999999999999999987653333
Q ss_pred cceecccccccccccccccccCcc-chhhhcccccccchhhhcccccccCcchhh--------------hhHHHHHHHHH
Q 001988 882 STMRTQTLATIGYMAPDEIFVGEL-SLKRWVNDLLPVSLVEVVDKSLLSGEEKHF--------------AAKEQCLLSIF 946 (985)
Q Consensus 882 ~~~~~~~~gt~~y~aPE~~~~~~~-~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~--------------~~~~~~~~~l~ 946 (985)
........||+.|+|||.+.+..+ +.++|+ |++|+++++++++..+....... ......+..+.
T Consensus 161 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di-~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (276)
T 2yex_A 161 ERLLNKMCGTLPYVAPELLKRREFHAEPVDV-WSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPL 239 (276)
T ss_dssp ECCBCCCCSCGGGCCGGGGTCSSBCHHHHHH-HHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTTSTTGGGSCHHHH
T ss_pred hhcccCCccccCccChHHHhcCCCCCCcchH-HHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhcccccCchhhcCHHHH
Confidence 233345679999999999987775 778999 99999999999988765432211 11223567899
Q ss_pred HHHHHccCCCCCCCCCHHHHHH
Q 001988 947 SLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 947 ~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
+++.+|+..||.+||++.|+++
T Consensus 240 ~li~~~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 240 ALLHKILVENPSARITIPDIKK 261 (276)
T ss_dssp HHHHHHSCSSTTTSCCHHHHTT
T ss_pred HHHHHHCCCCchhCCCHHHHhc
Confidence 9999999999999999999876
No 190
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=1.3e-34 Score=315.44 Aligned_cols=236 Identities=25% Similarity=0.348 Sum_probs=195.7
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC-cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEe
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC-ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLE 802 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~-~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e 802 (985)
.++|...+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 100 (285)
T 3is5_A 21 DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVME 100 (285)
T ss_dssp HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEE
Confidence 367899999999999999999875 78999999987653 2345788999999999999999999999999999999999
Q ss_pred ccCCCChHHHhhcC---CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEE---cCCCcEEEecccCceec
Q 001988 803 YMSNGSLEDCLHSS---NCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLL---DEDMVAHLSDFGMAKLL 876 (985)
Q Consensus 803 ~~~~gsL~~~l~~~---~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill---~~~~~~kl~DfGla~~~ 876 (985)
|+++|+|.+++... ...+++..+..++.|++.||+|| |++||+||||||+||++ +.++.+||+|||+++.+
T Consensus 101 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~L---H~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~ 177 (285)
T 3is5_A 101 TCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYF---HSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELF 177 (285)
T ss_dssp CCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHH---HHTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC-
T ss_pred eCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHH---HhCCEEECCCCHHHEEEecCCCCCCEEEEeeecceec
Confidence 99999999998643 45789999999999999999999 78999999999999999 45688999999999876
Q ss_pred cCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhhhH--------------HHHH
Q 001988 877 SGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAAK--------------EQCL 942 (985)
Q Consensus 877 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~~--------------~~~~ 942 (985)
.... ......||+.|+|||.+. +.++.++|+ |++|+++++++++..++......... ...+
T Consensus 178 ~~~~---~~~~~~~t~~y~aPE~~~-~~~~~~~Di-~slG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (285)
T 3is5_A 178 KSDE---HSTNAAGTALYMAPEVFK-RDVTFKCDI-WSAGVVMYFLLTGCLPFTGTSLEEVQQKATYKEPNYAVECRPLT 252 (285)
T ss_dssp ------------CTTGGGCCHHHHT-TCCCHHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCC--CCCC
T ss_pred CCcc---cCcCcccccCcCChHHhc-cCCCcccCe-ehHHHHHHHHHhCCCCCCCCCHHHHHhhhccCCcccccccCcCC
Confidence 4322 233456999999999864 678999999 99999999999988766543211111 1135
Q ss_pred HHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 943 LSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 943 ~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
+++.+++.+|+..||++||++.|+++
T Consensus 253 ~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 253 PQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp HHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred HHHHHHHHHHccCChhhCcCHHHHhc
Confidence 77899999999999999999999975
No 191
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=5.5e-35 Score=327.17 Aligned_cols=233 Identities=24% Similarity=0.321 Sum_probs=198.4
Q ss_pred cCccCCceeeccCceeEEEEEE-cCCcEEEEEEeccCCcc---hHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEE
Q 001988 726 DNFAENNIIGIGGFGSVYRARL-EDGVEIAIKVFHPQCAS---TLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVL 801 (985)
Q Consensus 726 ~~~~~~~~ig~G~~g~V~~~~~-~~~~~vAvK~~~~~~~~---~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~ 801 (985)
+.|...+.||+|+||.||+|+. .+++.||||++...... ..+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 133 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM 133 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence 4588889999999999999986 57999999999755322 2356889999999999999999999999999999999
Q ss_pred eccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCC
Q 001988 802 EYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDE 881 (985)
Q Consensus 802 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 881 (985)
||++ |++.+.+......+++..+..++.|+++||+|| |++||+||||||+||+++.++.+||+|||+++.....
T Consensus 134 e~~~-g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~L---H~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~-- 207 (348)
T 1u5q_A 134 EYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYL---HSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA-- 207 (348)
T ss_dssp ECCS-EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH---HHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB--
T ss_pred ecCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH---HhCCeeeCCCCHHHEEECCCCCEEEeeccCceecCCC--
Confidence 9997 688888876666799999999999999999999 7889999999999999999999999999999875321
Q ss_pred cceecccccccccccccccc---cCccchhhhcccccccchhhhcccccccCcchhhh-------------hHHHHHHHH
Q 001988 882 STMRTQTLATIGYMAPDEIF---VGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA-------------AKEQCLLSI 945 (985)
Q Consensus 882 ~~~~~~~~gt~~y~aPE~~~---~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~-------------~~~~~~~~l 945 (985)
....||+.|+|||.+. .+.++.++|+ |++|+++++++++..+........ ....+++.+
T Consensus 208 ----~~~~gt~~y~aPE~~~~~~~~~~~~~~Di-wslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 282 (348)
T 1u5q_A 208 ----NSFVGTPYWMAPEVILAMDEGQYDGKVDV-WSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYF 282 (348)
T ss_dssp ----CCCCSCGGGCCHHHHHTTSSCCBCTHHHH-HHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCCCTTSCHHH
T ss_pred ----CcccCCcceeCHhhhccccCCCCCcHHHH-HHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCCCCCCHHH
Confidence 2346999999999885 5778999999 999999999999887654322111 112356778
Q ss_pred HHHHHHccCCCCCCCCCHHHHHHH
Q 001988 946 FSLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 946 ~~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
.+++.+||..||.+||++.++++.
T Consensus 283 ~~li~~~l~~dP~~Rps~~~ll~h 306 (348)
T 1u5q_A 283 RNFVDSCLQKIPQDRPTSEVLLKH 306 (348)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred HHHHHHHcccChhhCcCHHHHhhC
Confidence 999999999999999999999753
No 192
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=5.2e-35 Score=332.77 Aligned_cols=238 Identities=21% Similarity=0.301 Sum_probs=194.8
Q ss_pred hcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCc--chHHHHHHHHHHHHhcC--CCCeeeEEeeeecCCceEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCA--STLKSFEAECEVIKNIR--HRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~--h~niv~l~~~~~~~~~~~lv 800 (985)
.++|...+.||+|+||.||+|...+++.||||++..... ...+.+.+|++++++++ ||||+++++++...+..++|
T Consensus 55 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 134 (390)
T 2zmd_A 55 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 134 (390)
T ss_dssp TEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred CCceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEE
Confidence 356999999999999999999988899999999976532 34567899999999996 59999999999999999999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCC
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGED 880 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~ 880 (985)
|| +.+++|.+++.... .+++..+..++.||+.||+|| |++||+||||||+|||++ ++.+||+|||+++.+....
T Consensus 135 ~E-~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~l---H~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~ 208 (390)
T 2zmd_A 135 ME-CGNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTI---HQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDT 208 (390)
T ss_dssp EE-CCSEEHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHH---HTTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC----
T ss_pred Ee-cCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HHCCeeecCCCHHHEEEE-CCeEEEEecCccccccCCC
Confidence 99 56889999998764 688999999999999999999 789999999999999995 5899999999998875433
Q ss_pred Ccceeccccccccccccccccc-----------CccchhhhcccccccchhhhcccccccCcchhh-h------------
Q 001988 881 ESTMRTQTLATIGYMAPDEIFV-----------GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF-A------------ 936 (985)
Q Consensus 881 ~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~-~------------ 936 (985)
........+||+.|+|||++.+ ..++.++|+ |++|+++++++++..++...... .
T Consensus 209 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di-wSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~ 287 (390)
T 2zmd_A 209 TSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDV-WSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEI 287 (390)
T ss_dssp -----CCSCCCGGGCCHHHHHCC------------CCHHHHH-HHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHCTTSCC
T ss_pred ccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhH-HHHHHHHHHHHHCCCcchhhhHHHHHHHHHhCccccC
Confidence 3333445679999999999865 468899999 99999999999988765432110 0
Q ss_pred -hHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 001988 937 -AKEQCLLSIFSLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 937 -~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
.+...+.++.+++.+||..||.+||++.|+++.
T Consensus 288 ~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~h 321 (390)
T 2zmd_A 288 EFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 321 (390)
T ss_dssp CCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred CCCccchHHHHHHHHHHcccChhhCCCHHHHhhC
Confidence 111234678999999999999999999999864
No 193
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=2.6e-35 Score=331.96 Aligned_cols=239 Identities=28% Similarity=0.287 Sum_probs=192.8
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc---chHHHHHHHHHH-HHhcCCCCeeeEEeeeecCCceEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA---STLKSFEAECEV-IKNIRHRNLVKIISSCSNDDFKAL 799 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~---~~~~~~~~E~~i-l~~l~h~niv~l~~~~~~~~~~~l 799 (985)
.++|...+.||+|+||.||+|+.+ +++.||+|++++... .....+.+|..+ ++.++||||+++++++.+.+..|+
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l 116 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF 116 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence 367899999999999999999976 688999999976532 233456677776 467899999999999999999999
Q ss_pred EEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCC
Q 001988 800 VLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGE 879 (985)
Q Consensus 800 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~ 879 (985)
||||++||+|.+++...+ .+++.....++.||+.||+|| |++||+||||||+||+++.+|++||+|||+++.....
T Consensus 117 v~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~L---H~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~ 192 (373)
T 2r5t_A 117 VLDYINGGELFYHLQRER-CFLEPRARFYAAEIASALGYL---HSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEH 192 (373)
T ss_dssp EEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHH---HHTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBCC
T ss_pred EEeCCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HHCCceecCCCHHHEEECCCCCEEEeeCccccccccC
Confidence 999999999999998654 678999999999999999999 7899999999999999999999999999999864322
Q ss_pred CCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhhh-----------HHHHHHHHHHH
Q 001988 880 DESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA-----------KEQCLLSIFSL 948 (985)
Q Consensus 880 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~l~~l 948 (985)
. ......+||+.|+|||.+.+..++.++|+ |++|++++++++|..++........ +...+.++.++
T Consensus 193 ~--~~~~~~~gt~~y~aPE~~~~~~~~~~~Di-wslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l 269 (373)
T 2r5t_A 193 N--STTSTFCGTPEYLAPEVLHKQPYDRTVDW-WCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQLKPNITNSARHL 269 (373)
T ss_dssp C--CCCCSBSCCCCCCCHHHHTTCCCCTHHHH-HHHHHHHHHHHHSSCTTCCSBHHHHHHHHHHSCCCCCSSSCHHHHHH
T ss_pred C--CccccccCCccccCHHHhCCCCCCchhhh-HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHH
Confidence 2 22345679999999999999999999999 9999999999999876644322111 12245778999
Q ss_pred HHHccCCCCCCCCCHHHHHHHH
Q 001988 949 ALECTMESPEKRIDAKDTITRL 970 (985)
Q Consensus 949 ~~~cl~~~P~~RPt~~ev~~~L 970 (985)
+.+|+..||.+||++.+.++.+
T Consensus 270 i~~lL~~dp~~R~~~~~~~~~i 291 (373)
T 2r5t_A 270 LEGLLQKDRTKRLGAKDDFMEI 291 (373)
T ss_dssp HHHHTCSSGGGSTTTTTTHHHH
T ss_pred HHHHcccCHHhCCCCCCCHHHH
Confidence 9999999999999986544443
No 194
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=6.1e-35 Score=316.88 Aligned_cols=240 Identities=28% Similarity=0.387 Sum_probs=197.7
Q ss_pred hcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecC-CceEEEEec
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSND-DFKALVLEY 803 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~-~~~~lv~e~ 803 (985)
.++|+..+.||+|+||.||+|+.. ++.||||+++.. ...+.+.+|++++++++||||+++++++.+. +..++||||
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~ 96 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 96 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECC
T ss_pred hhhceEEeEEecCCCceEEEEEEc-CCEEEEEEecch--hHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEec
Confidence 468899999999999999999885 889999998754 2457789999999999999999999997554 578999999
Q ss_pred cCCCChHHHhhcCCC-CCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCCc
Q 001988 804 MSNGSLEDCLHSSNC-ALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDES 882 (985)
Q Consensus 804 ~~~gsL~~~l~~~~~-~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~~ 882 (985)
+++|+|.+++..... .+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++......
T Consensus 97 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~l---H~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~-- 171 (278)
T 1byg_A 97 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYL---EGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ-- 171 (278)
T ss_dssp CTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCSGGGEEECTTSCEEECCCCC----------
T ss_pred CCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHH---HhCCccccCCCcceEEEeCCCcEEEeeccccccccccc--
Confidence 999999999976532 378899999999999999999 78899999999999999999999999999988653221
Q ss_pred ceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhhh------------hHHHHHHHHHHHH
Q 001988 883 TMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHFA------------AKEQCLLSIFSLA 949 (985)
Q Consensus 883 ~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~~------------~~~~~~~~l~~l~ 949 (985)
....+++.|+|||.+.+..++.++|+ |++|++++++++ +..+........ .+..+++++.+++
T Consensus 172 ---~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li 247 (278)
T 1byg_A 172 ---DTGKLPVKWTAPEALREKKFSTKSDV-WSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYEVM 247 (278)
T ss_dssp -------CCTTTSCHHHHHHCCCCHHHHH-HHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCCCCCCTTCCHHHHHHH
T ss_pred ---cCCCccccccCHHHhCCCCCCchhcH-HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCCCcccCCHHHHHHH
Confidence 22357889999999999999999999 999999999997 766554322111 1234567899999
Q ss_pred HHccCCCCCCCCCHHHHHHHHHHhHhh
Q 001988 950 LECTMESPEKRIDAKDTITRLLKIRDT 976 (985)
Q Consensus 950 ~~cl~~~P~~RPt~~ev~~~L~~i~~~ 976 (985)
.+||+.||.+||++.|+++.|++++..
T Consensus 248 ~~~l~~~p~~Rps~~~l~~~L~~i~~~ 274 (278)
T 1byg_A 248 KNCWHLDAAMRPSFLQLREQLEHIKTH 274 (278)
T ss_dssp HHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHhcCChhhCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999864
No 195
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=1.1e-34 Score=322.90 Aligned_cols=246 Identities=25% Similarity=0.398 Sum_probs=203.3
Q ss_pred cCccCCceeeccCceeEEEEEEc-CCcE--EEEEEeccCC-cchHHHHHHHHHHHHhc-CCCCeeeEEeeeecCCceEEE
Q 001988 726 DNFAENNIIGIGGFGSVYRARLE-DGVE--IAIKVFHPQC-ASTLKSFEAECEVIKNI-RHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 726 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~--vAvK~~~~~~-~~~~~~~~~E~~il~~l-~h~niv~l~~~~~~~~~~~lv 800 (985)
++|...+.||+|+||.||+|+.. +++. ||+|.++... ....+.+.+|+++++++ +||||+++++++.+.+..++|
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv 104 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA 104 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence 67889999999999999999864 5665 4999987542 23456789999999999 899999999999999999999
Q ss_pred EeccCCCChHHHhhcCC---------------CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcE
Q 001988 801 LEYMSNGSLEDCLHSSN---------------CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVA 865 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~---------------~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~ 865 (985)
|||+++|+|.+++.... ..+++..++.++.|+++||+|| |++||+||||||+||+++.++.+
T Consensus 105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~L---H~~~ivH~dlkp~NIl~~~~~~~ 181 (327)
T 1fvr_A 105 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYL---SQKQFIHRDLAARNILVGENYVA 181 (327)
T ss_dssp ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEECGGGCE
T ss_pred EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHH---HhCCccCCCCccceEEEcCCCeE
Confidence 99999999999997653 4689999999999999999999 78999999999999999999999
Q ss_pred EEecccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhh---------
Q 001988 866 HLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHF--------- 935 (985)
Q Consensus 866 kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~--------- 935 (985)
||+|||+++.... ........+++.|+|||.+....++.++|+ |++|++++++++ +..+.......
T Consensus 182 kL~Dfg~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~ 257 (327)
T 1fvr_A 182 KIADFGLSRGQEV---YVKKTMGRLPVRWMAIESLNYSVYTTNSDV-WSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQG 257 (327)
T ss_dssp EECCTTCEESSCE---ECCC----CCTTTCCHHHHHHCEECHHHHH-HHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGT
T ss_pred EEcccCcCccccc---cccccCCCCCccccChhhhccccCCchhcc-hHHHHHHHHHHcCCCCCCCCCcHHHHHHHhhcC
Confidence 9999999875321 111223357889999999999999999999 999999999997 76654332111
Q ss_pred ---hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhc
Q 001988 936 ---AAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLS 978 (985)
Q Consensus 936 ---~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~ 978 (985)
..+..+++++.+++.+||..+|.+||++.|+++.|.++.++..
T Consensus 258 ~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~ 303 (327)
T 1fvr_A 258 YRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERK 303 (327)
T ss_dssp CCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhhc
Confidence 1122356789999999999999999999999999999887643
No 196
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=3.3e-35 Score=341.17 Aligned_cols=237 Identities=24% Similarity=0.268 Sum_probs=193.7
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccC---CcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQ---CASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~---~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv 800 (985)
.++|+..+.||+|+||.||+|+.. +++.||||+++.. .......+.+|++++++++||||+++++++.+.+..++|
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv 226 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV 226 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence 467999999999999999999865 7899999999754 223345678899999999999999999999999999999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCC-CCeEeCCCCCCCEEEcCCCcEEEecccCceeccCC
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHS-TPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGE 879 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~-~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~ 879 (985)
|||+++|+|.+++.... .+++..+..++.|++.||+|| |+ +||+||||||+|||++.++.+||+|||+|+.....
T Consensus 227 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~L---H~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~ 302 (446)
T 4ejn_A 227 MEYANGGELFFHLSRER-VFSEDRARFYGAEIVSALDYL---HSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKD 302 (446)
T ss_dssp ECCCSSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHH---HHHTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-
T ss_pred EeeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---hhcCCEEECCCCHHHEEECCCCCEEEccCCCceeccCC
Confidence 99999999999997654 689999999999999999999 66 89999999999999999999999999999864322
Q ss_pred CCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhhh-----------HHHHHHHHHHH
Q 001988 880 DESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA-----------KEQCLLSIFSL 948 (985)
Q Consensus 880 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~l~~l 948 (985)
.......+||+.|+|||++.+..++.++|+ |++|+++++++++..++........ +...++++.++
T Consensus 303 --~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di-wslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~l 379 (446)
T 4ejn_A 303 --GATMKTFCGTPEYLAPEVLEDNDYGRAVDW-WGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLGPEAKSL 379 (446)
T ss_dssp ------CCSSSCGGGCCHHHHHTSCCCTHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHH
T ss_pred --CcccccccCCccccCHhhcCCCCCCCccch-hhhHHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHHH
Confidence 222345679999999999999999999999 9999999999999877654322211 22356779999
Q ss_pred HHHccCCCCCCCC-----CHHHHHH
Q 001988 949 ALECTMESPEKRI-----DAKDTIT 968 (985)
Q Consensus 949 ~~~cl~~~P~~RP-----t~~ev~~ 968 (985)
+.+||..||.+|| ++.|+++
T Consensus 380 i~~~L~~dP~~R~~~~~~t~~ell~ 404 (446)
T 4ejn_A 380 LSGLLKKDPKQRLGGGSEDAKEIMQ 404 (446)
T ss_dssp HHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred HHHHcccCHHHhCCCCCCCHHHHHh
Confidence 9999999999999 9999875
No 197
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.1e-34 Score=330.55 Aligned_cols=239 Identities=21% Similarity=0.337 Sum_probs=188.4
Q ss_pred HhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC--cchHHHHHHHHHHHHhcC-CCCeeeEEeeeecCC--ce
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC--ASTLKSFEAECEVIKNIR-HRNLVKIISSCSNDD--FK 797 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~--~~~~~~~~~E~~il~~l~-h~niv~l~~~~~~~~--~~ 797 (985)
..++|+..+.||+|+||.||+|... +++.||||++.... ......+.+|+.+++++. ||||+++++++...+ ..
T Consensus 7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~ 86 (388)
T 3oz6_A 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV 86 (388)
T ss_dssp HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence 4578999999999999999999865 78999999986542 334567789999999997 999999999997544 68
Q ss_pred EEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceecc
Q 001988 798 ALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLS 877 (985)
Q Consensus 798 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~ 877 (985)
|+||||++ |+|.+++... .+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+|+.+.
T Consensus 87 ~lv~e~~~-~~L~~~~~~~--~~~~~~~~~i~~qi~~~L~~L---H~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~ 160 (388)
T 3oz6_A 87 YLVFDYME-TDLHAVIRAN--ILEPVHKQYVVYQLIKVIKYL---HSGGLLHRDMKPSNILLNAECHVKVADFGLSRSFV 160 (388)
T ss_dssp EEEEECCS-EEHHHHHHHT--CCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCCGGGEEECTTCCEEECCCTTCEESS
T ss_pred EEEecccC-cCHHHHHHcC--CCCHHHHHHHHHHHHHHHHHH---HhCCEEeCCCCHHHeEEcCCCCEEecCCccccccc
Confidence 99999997 5899998864 688999999999999999999 78999999999999999999999999999998764
Q ss_pred CCC-------------------Ccceeccccccccccccccccc-CccchhhhcccccccchhhhcccccccCcchhhhh
Q 001988 878 GED-------------------ESTMRTQTLATIGYMAPDEIFV-GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA 937 (985)
Q Consensus 878 ~~~-------------------~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~ 937 (985)
... ........+||+.|+|||.+.+ ..++.++|+ |++|++++++++|..++........
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di-wSlG~il~ell~g~~pf~~~~~~~~ 239 (388)
T 3oz6_A 161 NIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDM-WSLGCILGEILCGKPIFPGSSTMNQ 239 (388)
T ss_dssp SCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHH-HHHHHHHHHHHHSSCSCCCSSHHHH
T ss_pred ccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhH-HHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 311 1122344579999999999876 678999999 9999999999998876543211110
Q ss_pred H----------------------------------------------------------HHHHHHHHHHHHHccCCCCCC
Q 001988 938 K----------------------------------------------------------EQCLLSIFSLALECTMESPEK 959 (985)
Q Consensus 938 ~----------------------------------------------------------~~~~~~l~~l~~~cl~~~P~~ 959 (985)
. ..+++++.+++.+||..||++
T Consensus 240 ~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~ 319 (388)
T 3oz6_A 240 LERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPNK 319 (388)
T ss_dssp HHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGG
T ss_pred HHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCccc
Confidence 0 023567899999999999999
Q ss_pred CCCHHHHHHH
Q 001988 960 RIDAKDTITR 969 (985)
Q Consensus 960 RPt~~ev~~~ 969 (985)
|||+.|+++.
T Consensus 320 R~t~~e~l~H 329 (388)
T 3oz6_A 320 RISANDALKH 329 (388)
T ss_dssp SCCHHHHTTS
T ss_pred CCCHHHHhCC
Confidence 9999999864
No 198
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=3.3e-35 Score=325.55 Aligned_cols=251 Identities=19% Similarity=0.210 Sum_probs=205.5
Q ss_pred HhcCccCCceeeccCceeEEEEEE-cCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeee----cCCceE
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARL-EDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCS----NDDFKA 798 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~----~~~~~~ 798 (985)
..++|+..+.||+|+||.||+|+. .+++.||||++........+.+.+|++++++++||||+++++++. .....+
T Consensus 27 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 106 (317)
T 2buj_A 27 DNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAW 106 (317)
T ss_dssp TTEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEE
T ss_pred CCeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeE
Confidence 346899999999999999999997 589999999997765566778999999999999999999999986 334788
Q ss_pred EEEeccCCCChHHHhhc---CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCcee
Q 001988 799 LVLEYMSNGSLEDCLHS---SNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKL 875 (985)
Q Consensus 799 lv~e~~~~gsL~~~l~~---~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~ 875 (985)
+||||+++|+|.+++.. .+..+++..++.++.|+++||+|| |++||+||||||+||+++.++.+||+|||+++.
T Consensus 107 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~L---H~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~ 183 (317)
T 2buj_A 107 LLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAI---HAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQ 183 (317)
T ss_dssp EEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCCGGGEEECTTSCEEECCCSSCEE
T ss_pred EEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH---HhCCcccCCCCHHHEEEcCCCCEEEEecCcchh
Confidence 99999999999999876 355789999999999999999999 788999999999999999999999999999887
Q ss_pred ccCCCCcc-------eecccccccccccccccccCc---cchhhhcccccccchhhhcccccccCcchh-----------
Q 001988 876 LSGEDEST-------MRTQTLATIGYMAPDEIFVGE---LSLKRWVNDLLPVSLVEVVDKSLLSGEEKH----------- 934 (985)
Q Consensus 876 ~~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~---~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~----------- 934 (985)
........ ......||+.|+|||.+.... ++.++|+ |++|+++++++++..+......
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di-~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~ 262 (317)
T 2buj_A 184 ACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDV-WSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQN 262 (317)
T ss_dssp SCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHH-HHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHHC
T ss_pred cccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhH-HHHHHHHHHHHhCCCChhhhhcccchhhHHhhc
Confidence 53211110 112335799999999987543 6889999 9999999999998865432100
Q ss_pred ---hhhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhc
Q 001988 935 ---FAAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLS 978 (985)
Q Consensus 935 ---~~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~ 978 (985)
.+....++.++.+++.+||..||.+||++.|+++.|+.+....+
T Consensus 263 ~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~~~ 309 (317)
T 2buj_A 263 QLSIPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAP 309 (317)
T ss_dssp C--CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCCCC
T ss_pred cCCCCccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCCCC
Confidence 01112356789999999999999999999999999999876443
No 199
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=1.1e-34 Score=321.08 Aligned_cols=239 Identities=21% Similarity=0.244 Sum_probs=194.6
Q ss_pred hcCccCC-ceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhc-CCCCeeeEEeeeecCCceEEEE
Q 001988 725 TDNFAEN-NIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNI-RHRNLVKIISSCSNDDFKALVL 801 (985)
Q Consensus 725 ~~~~~~~-~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l-~h~niv~l~~~~~~~~~~~lv~ 801 (985)
.+.|... +.||+|+||.||+|+.. +++.||||++..........+.+|++++.++ +||||+++++++.+.+..++||
T Consensus 11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~ 90 (316)
T 2ac3_A 11 EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVF 90 (316)
T ss_dssp TTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred ceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEE
Confidence 3567774 78999999999999854 7899999999876555667899999999985 7999999999999999999999
Q ss_pred eccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCc---EEEecccCceeccC
Q 001988 802 EYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMV---AHLSDFGMAKLLSG 878 (985)
Q Consensus 802 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~---~kl~DfGla~~~~~ 878 (985)
||+++|+|.+++.... .+++..+..++.|++.||+|| |++||+||||||+||+++.++. +||+|||+++.+..
T Consensus 91 e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~l---H~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~ 166 (316)
T 2ac3_A 91 EKMRGGSILSHIHKRR-HFNELEASVVVQDVASALDFL---HNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKL 166 (316)
T ss_dssp ECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHH---HHTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC----
T ss_pred EcCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHH---HhCCceeCCCCHHHEEEccCCCcCceEEEEccCcccccc
Confidence 9999999999998754 689999999999999999999 7889999999999999998776 99999999987642
Q ss_pred CCC-----cceeccccccccccccccccc-----CccchhhhcccccccchhhhcccccccCcchhh-------------
Q 001988 879 EDE-----STMRTQTLATIGYMAPDEIFV-----GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF------------- 935 (985)
Q Consensus 879 ~~~-----~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~------------- 935 (985)
... .......+||+.|+|||.+.. ..++.++|+ |++|+++++++++..++......
T Consensus 167 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~Di-wslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~ 245 (316)
T 2ac3_A 167 NGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDL-WSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPAC 245 (316)
T ss_dssp ---------------CCSGGGCCHHHHHHTSHHHHHHTTTHHH-HHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHH
T ss_pred CCccccccccccccccCCcCccChHHhhcccccccCCCccccc-HhHHHHHHHHHHCCCCCcccccccccccccccchhH
Confidence 221 111233469999999999875 568889999 99999999999988765432100
Q ss_pred -----------------hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 936 -----------------AAKEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 936 -----------------~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
.....++.++.+++.+|+..||.+||++.|+++
T Consensus 246 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 295 (316)
T 2ac3_A 246 QNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQ 295 (316)
T ss_dssp HHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHHHHHHHhccCcccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence 001124567899999999999999999999987
No 200
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=1.2e-34 Score=336.82 Aligned_cols=234 Identities=23% Similarity=0.261 Sum_probs=190.4
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccC--CcchHHHHHHHHHHHHhcCCCCeeeEEeeeecC------C
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQ--CASTLKSFEAECEVIKNIRHRNLVKIISSCSND------D 795 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~--~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~------~ 795 (985)
.++|+..+.||+|+||.||+|+.. +++.||||++... .....+.+.+|++++++++||||+++++++... .
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 478999999999999999999865 7899999999754 233456788999999999999999999999654 3
Q ss_pred ceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCcee
Q 001988 796 FKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKL 875 (985)
Q Consensus 796 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~ 875 (985)
..|+||||+++ ++.+.+.. .+++..+..++.|++.||+|| |++||+||||||+|||++.++.+||+|||+|+.
T Consensus 141 ~~~lv~E~~~~-~l~~~~~~---~l~~~~~~~~~~qil~aL~~l---H~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~ 213 (464)
T 3ttj_A 141 DVYLVMELMDA-NLCQVIQM---ELDHERMSYLLYQMLCGIKHL---HSAGIIHRDLKPSNIVVKSDCTLKILDFGLART 213 (464)
T ss_dssp EEEEEEECCSE-EHHHHHTS---CCCHHHHHHHHHHHHHHHHHH---HHTTCCCCCCCGGGEEECTTSCEEECCCCCC--
T ss_pred eEEEEEeCCCC-CHHHHHhh---cCCHHHHHHHHHHHHHHHHHH---HHCCcccCCCChHhEEEeCCCCEEEEEEEeeee
Confidence 56999999976 56666653 478999999999999999999 788999999999999999999999999999987
Q ss_pred ccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh-------------------
Q 001988 876 LSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA------------------- 936 (985)
Q Consensus 876 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~------------------- 936 (985)
.... ......+||+.|+|||.+.+..++.++|+ |++|++++++++++.++.......
T Consensus 214 ~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~Di-wSlG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~~ 289 (464)
T 3ttj_A 214 AGTS---FMMTPYVVTRYYRAPEVILGMGYKENVDI-WSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKK 289 (464)
T ss_dssp ---C---CCC----CCCTTCCHHHHTTCCCCTTHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTT
T ss_pred cCCC---cccCCCcccccccCHHHHcCCCCCHHHHH-HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHH
Confidence 6432 22344679999999999999999999999 999999999999887654321110
Q ss_pred ----------------------------------hHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 001988 937 ----------------------------------AKEQCLLSIFSLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 937 ----------------------------------~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
.......++.+++.+|+..||++|||+.|+++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~H 356 (464)
T 3ttj_A 290 LQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQH 356 (464)
T ss_dssp SCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTS
T ss_pred cchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcC
Confidence 001125678999999999999999999999863
No 201
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=6.6e-35 Score=325.51 Aligned_cols=235 Identities=21% Similarity=0.284 Sum_probs=198.1
Q ss_pred HhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhc-CCCCeeeEEeeeecCCceEEEE
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNI-RHRNLVKIISSCSNDDFKALVL 801 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l-~h~niv~l~~~~~~~~~~~lv~ 801 (985)
..++|...+.||+|+||.||+|..+ +++.||||++.+... ...+|++++.++ +||||+++++++.+.+..++||
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ 95 (342)
T 2qr7_A 20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVT 95 (342)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEE
T ss_pred ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEE
Confidence 4577999999999999999999976 789999999976532 235788889888 7999999999999999999999
Q ss_pred eccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCC----CcEEEecccCceecc
Q 001988 802 EYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDED----MVAHLSDFGMAKLLS 877 (985)
Q Consensus 802 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~----~~~kl~DfGla~~~~ 877 (985)
||++||+|.+++...+ .+++.....++.||+.||+|| |++||+||||||+||++.++ +.+||+|||+++.+.
T Consensus 96 E~~~gg~L~~~i~~~~-~~~~~~~~~~~~qi~~al~~l---H~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~ 171 (342)
T 2qr7_A 96 ELMKGGELLDKILRQK-FFSEREASAVLFTITKTVEYL---HAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLR 171 (342)
T ss_dssp CCCCSCBHHHHHHTCT-TCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECB
T ss_pred eCCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH---HHCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCc
Confidence 9999999999998654 689999999999999999999 78899999999999998443 359999999999865
Q ss_pred CCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh------------------hHH
Q 001988 878 GEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA------------------AKE 939 (985)
Q Consensus 878 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~------------------~~~ 939 (985)
.... .....+||+.|+|||.+.+..++.++|+ |++|++++++++|..++....... ...
T Consensus 172 ~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Di-wslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 248 (342)
T 2qr7_A 172 AENG--LLMTPCYTANFVAPEVLERQGYDAACDI-WSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSLSGGYWN 248 (342)
T ss_dssp CTTC--CBCCSSCCSSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHHCCCCCCSTTTT
T ss_pred CCCC--ceeccCCCccccCHHHhcCCCCCCccCe-eeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHccCCcccCccccc
Confidence 3322 2334579999999999998889999999 999999999999987664321110 012
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 001988 940 QCLLSIFSLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 940 ~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
.+++++.+++.+|+..||++||++.|+++.
T Consensus 249 ~~s~~~~~li~~~L~~dP~~R~t~~~il~h 278 (342)
T 2qr7_A 249 SVSDTAKDLVSKMLHVDPHQRLTAALVLRH 278 (342)
T ss_dssp TSCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred cCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 356789999999999999999999998863
No 202
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=6.1e-35 Score=321.93 Aligned_cols=248 Identities=21% Similarity=0.249 Sum_probs=199.0
Q ss_pred HhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcc---hHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEE
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCAS---TLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKAL 799 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~---~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~l 799 (985)
..++|...+.||+|+||.||+|+.. +++.||+|++...... ..+.+.+|++++++++||||+++++++..++..++
T Consensus 32 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~l 111 (309)
T 2h34_A 32 QFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYV 111 (309)
T ss_dssp --CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEE
T ss_pred EeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEE
Confidence 3478999999999999999999975 7899999999765322 24678899999999999999999999999999999
Q ss_pred EEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCC
Q 001988 800 VLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGE 879 (985)
Q Consensus 800 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~ 879 (985)
||||+++++|.+++...+ .+++..+..++.|++.||+|| |+.||+||||||+||+++.++.+||+|||++......
T Consensus 112 v~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~l---H~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~ 187 (309)
T 2h34_A 112 DMRLINGVDLAAMLRRQG-PLAPPRAVAIVRQIGSALDAA---HAAGATHRDVKPENILVSADDFAYLVDFGIASATTDE 187 (309)
T ss_dssp EEECCCCEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCCGGGEEECTTSCEEECSCCC-------
T ss_pred EEEecCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HHCcCCcCCCChHHEEEcCCCCEEEecCccCcccccc
Confidence 999999999999998654 689999999999999999999 7889999999999999999999999999999876432
Q ss_pred CCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh--------------hhHHHHHHHH
Q 001988 880 DESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF--------------AAKEQCLLSI 945 (985)
Q Consensus 880 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~--------------~~~~~~~~~l 945 (985)
. ........||+.|+|||.+.+..++.++|+ |++|+++++++++..++...... ..+..++.++
T Consensus 188 ~-~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 265 (309)
T 2h34_A 188 K-LTQLGNTVGTLYYMAPERFSESHATYRADI-YALTCVLYECLTGSPPYQGDQLSVMGAHINQAIPRPSTVRPGIPVAF 265 (309)
T ss_dssp ----------CCGGGCCGGGTCC----CCCHH-HHHHHHHHHHHHSSCSSCSCHHHHHHHHHHSCCCCGGGTSTTCCTHH
T ss_pred c-cccccccCCCcCccCHHHHcCCCCCchHhH-HHHHHHHHHHHHCCCCCCCchHHHHHHHhccCCCCccccCCCCCHHH
Confidence 2 122234569999999999999999999999 99999999999988765443211 1122356779
Q ss_pred HHHHHHccCCCCCCCC-CHHHHHHHHHHhHhhh
Q 001988 946 FSLALECTMESPEKRI-DAKDTITRLLKIRDTL 977 (985)
Q Consensus 946 ~~l~~~cl~~~P~~RP-t~~ev~~~L~~i~~~~ 977 (985)
.+++.+||..||++|| ++.++++.|+++.+..
T Consensus 266 ~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~ 298 (309)
T 2h34_A 266 DAVIARGMAKNPEDRYVTCGDLSAAAHAALATA 298 (309)
T ss_dssp HHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC--
T ss_pred HHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhh
Confidence 9999999999999999 9999999999876544
No 203
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.7e-33 Score=314.35 Aligned_cols=304 Identities=25% Similarity=0.381 Sum_probs=161.5
Q ss_pred hccccceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEE
Q 001988 168 HLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVL 247 (985)
Q Consensus 168 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 247 (985)
.+++|++|++++|.+. .+|. +..+++|++|++++|++++. |. +.++++|++|++++|++++ +| .+..+++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~~-~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEE
T ss_pred hcccccEEEEeCCccc-cchh-hhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEE
Confidence 4566666666666665 3443 66666666677766666643 33 6666666666666666663 33 46666666666
Q ss_pred EecCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccEEEccCccc
Q 001988 248 QLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMGSNSF 327 (985)
Q Consensus 248 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 327 (985)
++++|++++..+ +..+++|++|++++|.....++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC
T ss_pred ECcCCcccCchh--hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc
Confidence 666666664332 56666666666666654433333 3355666666666666554333 55556666666666665
Q ss_pred ccccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhcccceecccccccc
Q 001988 328 SGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISG 407 (985)
Q Consensus 328 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~ 407 (985)
.+..+ +..+++|+.|++++|+++...+ +..+++|++|++++|++++..+ +..++ +|++|++++|.+++
T Consensus 190 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~-------~~~~~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 190 EDISP--LASLTSLHYFTAYVNQITDITP-------VANMTRLNSLKIGNNKITDLSP--LANLS-QLTWLEIGTNQISD 257 (347)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCCCCCGG--GTTCT-TCCEEECCSSCCCC
T ss_pred ccccc--ccCCCccceeecccCCCCCCch-------hhcCCcCCEEEccCCccCCCcc--hhcCC-CCCEEECCCCccCC
Confidence 54333 5555666666666665554332 3445555555555555543222 33333 34444444444443
Q ss_pred ccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCcC
Q 001988 408 NIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGN 487 (985)
Q Consensus 408 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 487 (985)
. ..+..+++|++|++++|++++. ..+..+++|+.|++++|++++..|..+..+++|++|++++|++++..| +..
T Consensus 258 ~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~ 331 (347)
T 4fmz_A 258 I--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS 331 (347)
T ss_dssp C--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGG
T ss_pred C--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhh
Confidence 2 2344445555555555555432 234444455555555555544444444445555555555555444333 444
Q ss_pred cCcCceEeecccee
Q 001988 488 LTSLQYLNLGSNRF 501 (985)
Q Consensus 488 l~~L~~L~L~~N~l 501 (985)
+++|++|++++|.|
T Consensus 332 l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 332 LSKMDSADFANQVI 345 (347)
T ss_dssp CTTCSEESSSCC--
T ss_pred hhccceeehhhhcc
Confidence 44444444444444
No 204
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=1.7e-34 Score=315.00 Aligned_cols=235 Identities=21% Similarity=0.302 Sum_probs=197.9
Q ss_pred HhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC--cchHHHHHHHHHHHHhc-CCCCeeeEEeeeecCCceEE
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC--ASTLKSFEAECEVIKNI-RHRNLVKIISSCSNDDFKAL 799 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~--~~~~~~~~~E~~il~~l-~h~niv~l~~~~~~~~~~~l 799 (985)
..++|...+.||+|+||.||+|+.. +++.||+|++.... ......+.+|+.++.++ +||||+++++++.+++..++
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l 88 (289)
T 1x8b_A 9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI 88 (289)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence 4578999999999999999999976 79999999997642 23456788999999999 89999999999999999999
Q ss_pred EEeccCCCChHHHhhcC---CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCC--------------
Q 001988 800 VLEYMSNGSLEDCLHSS---NCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDED-------------- 862 (985)
Q Consensus 800 v~e~~~~gsL~~~l~~~---~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~-------------- 862 (985)
||||+++|+|.+++... ...+++..+..++.|++.||+|| |++||+||||||+||+++.+
T Consensus 89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~l---H~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~ 165 (289)
T 1x8b_A 89 QNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYI---HSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDD 165 (289)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEEC----------------
T ss_pred EEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHH---HhCCEeecCCCHHHEEEcCCCCCccccccccccc
Confidence 99999999999999764 24689999999999999999999 78999999999999999844
Q ss_pred -----CcEEEecccCceeccCCCCcceecccccccccccccccccC-ccchhhhcccccccchhhhcccccccCcchhhh
Q 001988 863 -----MVAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVG-ELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA 936 (985)
Q Consensus 863 -----~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~ 936 (985)
..+||+|||.++...... ...||+.|+|||.+.+. .++.++|+ |++|+++++++++..+........
T Consensus 166 ~~~~~~~~kl~Dfg~~~~~~~~~------~~~gt~~y~aPE~~~~~~~~~~~~Di-~slG~il~~l~~~~~~~~~~~~~~ 238 (289)
T 1x8b_A 166 WASNKVMFKIGDLGHVTRISSPQ------VEEGDSRFLANEVLQENYTHLPKADI-FALALTVVCAAGAEPLPRNGDQWH 238 (289)
T ss_dssp ----CCCEEECCCTTCEETTCSC------CCCCCGGGCCHHHHTTCCTTHHHHHH-HHHHHHHHHHTTCCCCCSSSHHHH
T ss_pred ccCCceEEEEcccccccccCCcc------ccCCCccccChhHhcCCCCCCchhhH-HHHHHHHHHHhcCCCCCcchhHHH
Confidence 479999999998864322 23499999999998766 56689999 999999999998876543322111
Q ss_pred ---------hHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 937 ---------AKEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 937 ---------~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
.+..+++++.+++.+||..||++||++.|+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 279 (289)
T 1x8b_A 239 EIRQGRLPRIPQVLSQEFTELLKVMIHPDPERRPSAMALVK 279 (289)
T ss_dssp HHHTTCCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHcCCCCCCCcccCHHHHHHHHHHhCCCcccCCCHHHHhh
Confidence 12235678999999999999999999999875
No 205
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=1.4e-34 Score=337.45 Aligned_cols=194 Identities=23% Similarity=0.348 Sum_probs=154.2
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc--chHHHHHHHHHHHHhcCCCCeeeEEeeeec-----CCc
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA--STLKSFEAECEVIKNIRHRNLVKIISSCSN-----DDF 796 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~h~niv~l~~~~~~-----~~~ 796 (985)
.++|...+.||+|+||.||+|+.. +++.||||++..... ...+.+.+|++++++++||||+++++++.. .+.
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 468999999999999999999865 789999999975432 345678999999999999999999999943 356
Q ss_pred eEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceec
Q 001988 797 KALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLL 876 (985)
Q Consensus 797 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~ 876 (985)
.|+||||+ +|+|.+++... ..+++..+..++.||+.||+|| |++|||||||||+|||++.++.+||+|||+|+..
T Consensus 132 ~~lv~e~~-~~~L~~~~~~~-~~l~~~~~~~~~~qi~~aL~~L---H~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~ 206 (458)
T 3rp9_A 132 LYVVLEIA-DSDFKKLFRTP-VYLTELHIKTLLYNLLVGVKYV---HSAGILHRDLKPANCLVNQDCSVKVCDFGLARTV 206 (458)
T ss_dssp EEEEECCC-SEEHHHHHHSS-CCCCHHHHHHHHHHHHHHHHHH---HHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCT
T ss_pred EEEEEecc-ccchhhhcccC-CCCCHHHHHHHHHHHHHHHHHH---HhCCcCCCCCChhhEEECCCCCEeecccccchhc
Confidence 89999998 57999998765 3689999999999999999999 7889999999999999999999999999999876
Q ss_pred cCCCCc-------------------------ceeccccccccccccccc-ccCccchhhhcccccccchhhhcc
Q 001988 877 SGEDES-------------------------TMRTQTLATIGYMAPDEI-FVGELSLKRWVNDLLPVSLVEVVD 924 (985)
Q Consensus 877 ~~~~~~-------------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~dv~~~~g~~~~~i~~ 924 (985)
...... ......+||+.|+|||++ ....++.++|+ |++|++++|+++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~Di-wSlG~il~ellt 279 (458)
T 3rp9_A 207 DYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDV-WSIGCIFAELLN 279 (458)
T ss_dssp TSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHH-HHHHHHHHHHHT
T ss_pred cCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHH-HHHHHHHHHHHH
Confidence 432211 123445789999999976 45679999999 999999999996
No 206
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=9.8e-35 Score=340.77 Aligned_cols=237 Identities=23% Similarity=0.298 Sum_probs=202.4
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC---cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC---ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~---~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv 800 (985)
.++|...+.||+|+||.||+|+.. +|+.||+|++.+.. ......+.+|++++++++||||+++++++.+.+..++|
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 262 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV 262 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence 467888999999999999999975 79999999996542 22345688999999999999999999999999999999
Q ss_pred EeccCCCChHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCC
Q 001988 801 LEYMSNGSLEDCLHSSN-CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGE 879 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~ 879 (985)
|||++||+|.+++...+ ..+++..+..++.||+.||+|| |++||+||||||+||+++.+|.+||+|||+++.+...
T Consensus 263 mEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yL---H~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~ 339 (576)
T 2acx_A 263 LTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDL---HRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG 339 (576)
T ss_dssp ECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred EEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH---HHCCEeccCCchheEEEeCCCCeEEEecccceecccC
Confidence 99999999999998653 3589999999999999999999 7889999999999999999999999999999886432
Q ss_pred CCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh---------------hHHHHHHH
Q 001988 880 DESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA---------------AKEQCLLS 944 (985)
Q Consensus 880 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~---------------~~~~~~~~ 944 (985)
. .....+||+.|+|||++.+..++.++|+ |++|++++++++|..++....... .+...+.+
T Consensus 340 ~---~~~~~~GT~~Y~APEvl~~~~~~~~~Di-wSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~~~~~p~~~s~~ 415 (576)
T 2acx_A 340 Q---TIKGRVGTVGYMAPEVVKNERYTFSPDW-WALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVPEEYSERFSPQ 415 (576)
T ss_dssp C---CEECCCSCGGGCCHHHHTTCEESSHHHH-HHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHCCCCCCTTSCHH
T ss_pred c---cccccCCCccccCHHHHcCCCCCccchH-HHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhcccccCCccCCHH
Confidence 2 2234579999999999999999999999 999999999999987665431100 11224578
Q ss_pred HHHHHHHccCCCCCCCC-----CHHHHHH
Q 001988 945 IFSLALECTMESPEKRI-----DAKDTIT 968 (985)
Q Consensus 945 l~~l~~~cl~~~P~~RP-----t~~ev~~ 968 (985)
+.+++.+|+..||.+|| ++.|+++
T Consensus 416 ~~dLI~~lL~~dP~~R~g~~~~sa~eil~ 444 (576)
T 2acx_A 416 ARSLCSQLLCKDPAERLGCRGGSAREVKE 444 (576)
T ss_dssp HHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred HHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence 89999999999999999 6788764
No 207
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=4.9e-35 Score=324.94 Aligned_cols=236 Identities=20% Similarity=0.277 Sum_probs=192.0
Q ss_pred cCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcc-hHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEec
Q 001988 726 DNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCAS-TLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLEY 803 (985)
Q Consensus 726 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~-~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e~ 803 (985)
++|...+.||+|+||.||+|+.. +++.||+|++...... ....+.+|++++++++||||+++++++.+.+..++||||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY 81 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence 57889999999999999999976 7899999999754322 122456799999999999999999999999999999999
Q ss_pred cCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCCcc
Q 001988 804 MSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDEST 883 (985)
Q Consensus 804 ~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~ 883 (985)
++ |+|.+++...+..+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++...... .
T Consensus 82 ~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~L---H~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~--~ 155 (324)
T 3mtl_A 82 LD-KDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYC---HRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPT--K 155 (324)
T ss_dssp CS-EEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHH---HHTTEEESSCCGGGEEECTTCCEEECSSSEEECC-------
T ss_pred cc-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH---HHCCccCCCcCHHHEEECCCCCEEEccCcccccccCCc--c
Confidence 97 599999988777799999999999999999999 78999999999999999999999999999998654222 2
Q ss_pred eeccccccccccccccccc-CccchhhhcccccccchhhhcccccccCcchhhhh-------------------------
Q 001988 884 MRTQTLATIGYMAPDEIFV-GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA------------------------- 937 (985)
Q Consensus 884 ~~~~~~gt~~y~aPE~~~~-~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~------------------------- 937 (985)
......||+.|+|||.+.+ ..++.++|+ |++|+++++++++..++........
T Consensus 156 ~~~~~~~t~~y~aPE~~~~~~~~~~~~Di-wslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 234 (324)
T 3mtl_A 156 TYDNEVVTLWYRPPDILLGSTDYSTQIDM-WGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEF 234 (324)
T ss_dssp -------CGGGCCHHHHTTCCCCCTHHHH-HHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCHHH
T ss_pred ccccccCcccccChhhhcCCCCCCcHHHH-HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcchhh
Confidence 2234568999999999876 568999999 9999999999998866543221110
Q ss_pred ----------------HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 938 ----------------KEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 938 ----------------~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
....++++.+++.+|+..||.+|||+.|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 281 (324)
T 3mtl_A 235 KTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK 281 (324)
T ss_dssp HHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred cccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence 0123467889999999999999999999987
No 208
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.4e-34 Score=324.38 Aligned_cols=240 Identities=24% Similarity=0.335 Sum_probs=194.1
Q ss_pred HHhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcc-----hHHHHHHHHHHHHhcCCCCeeeEEeeeecCCc
Q 001988 723 RATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCAS-----TLKSFEAECEVIKNIRHRNLVKIISSCSNDDF 796 (985)
Q Consensus 723 ~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~-----~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~ 796 (985)
...++|...+.||+|+||.||+|+.. +|+.||||++...... ....+.+|++++++++||||+++++++.+.+.
T Consensus 7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 86 (346)
T 1ua2_A 7 SRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSN 86 (346)
T ss_dssp ------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTC
T ss_pred HHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCc
Confidence 34578999999999999999999975 6899999998754221 12467899999999999999999999999999
Q ss_pred eEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceec
Q 001988 797 KALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLL 876 (985)
Q Consensus 797 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~ 876 (985)
.++||||+++ +|.+++......+++..+..++.|+++||+|| |+.||+||||||+||+++.++.+||+|||+++.+
T Consensus 87 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l---H~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~ 162 (346)
T 1ua2_A 87 ISLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYL---HQHWILHRDLKPNNLLLDENGVLKLADFGLAKSF 162 (346)
T ss_dssp CEEEEECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHH---HHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTT
T ss_pred eEEEEEcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHH---HHCCEECCCCCHHHEEEcCCCCEEEEecccceec
Confidence 9999999975 89999987766789999999999999999999 7899999999999999999999999999999876
Q ss_pred cCCCCcceecccccccccccccccccC-ccchhhhcccccccchhhhcccccccCcchhhhh------------------
Q 001988 877 SGEDESTMRTQTLATIGYMAPDEIFVG-ELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA------------------ 937 (985)
Q Consensus 877 ~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~------------------ 937 (985)
.... .......||+.|+|||.+.+. .++.++|+ |++|+++++++++..+.........
T Consensus 163 ~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di-wslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 239 (346)
T 1ua2_A 163 GSPN--RAYTHQVVTRWYRAPELLFGARMYGVGVDM-WAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPD 239 (346)
T ss_dssp TSCC--CCCCCSCCCCTTCCHHHHTTCSCCCHHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSS
T ss_pred cCCc--ccCCcccccccccCchHhhCCCCCCchhhh-HhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCChhhhhh
Confidence 4322 223345699999999998764 47899999 9999999999998765433211110
Q ss_pred ---------------------HHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 001988 938 ---------------------KEQCLLSIFSLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 938 ---------------------~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
...+++++.+++.+|+..||.+|||+.|+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 292 (346)
T 1ua2_A 240 MCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM 292 (346)
T ss_dssp TTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred hccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcC
Confidence 01234679999999999999999999999863
No 209
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=1e-34 Score=317.27 Aligned_cols=247 Identities=23% Similarity=0.347 Sum_probs=197.1
Q ss_pred hcCccCCceeeccCceeEEEEEEc--CCc--EEEEEEeccCC---cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCce
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE--DGV--EIAIKVFHPQC---ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFK 797 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~--~~~--~vAvK~~~~~~---~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~ 797 (985)
.++|+..+.||+|+||.||+|++. +++ .||||+++... ....+.+.+|++++++++||||+++++++...+ .
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~ 95 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M 95 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c
Confidence 467899999999999999999853 333 69999987652 234567899999999999999999999998765 7
Q ss_pred EEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceecc
Q 001988 798 ALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLS 877 (985)
Q Consensus 798 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~ 877 (985)
++||||+++|+|.+++......+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++.+.
T Consensus 96 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~l---H~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~ 172 (291)
T 1u46_A 96 KMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYL---ESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALP 172 (291)
T ss_dssp EEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHH---HHTTEECSCCCGGGEEEEETTEEEECCCTTCEECC
T ss_pred eeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHH---HhCCcccCCCchheEEEcCCCCEEEcccccccccc
Confidence 899999999999999987656789999999999999999999 78899999999999999999999999999998875
Q ss_pred CCCCcc-eecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhh-------------hhHHHHH
Q 001988 878 GEDEST-MRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHF-------------AAKEQCL 942 (985)
Q Consensus 878 ~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~-------------~~~~~~~ 942 (985)
...... ......+|+.|+|||.+.+..++.++|+ |++|++++++++ +..+....... ..+..++
T Consensus 173 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (291)
T 1u46_A 173 QNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDT-WMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCP 251 (291)
T ss_dssp C-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHH-HHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCCCCCCCTTCC
T ss_pred ccccchhhhccCCCCceeeCchhhcCCCCCchhhH-HHHHHHHHHHHhCCCCCcccCCHHHHHHHHHccCCCCCCCcCcC
Confidence 433322 2234457889999999999999999999 999999999998 77655432111 1123456
Q ss_pred HHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhh
Q 001988 943 LSIFSLALECTMESPEKRIDAKDTITRLLKIRDT 976 (985)
Q Consensus 943 ~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~ 976 (985)
.++.+++.+||..+|.+||++.++++.|+++.+.
T Consensus 252 ~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 285 (291)
T 1u46_A 252 QDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT 285 (291)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHccCCcccCcCHHHHHHHHHHhCcc
Confidence 7899999999999999999999999999988754
No 210
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=3.9e-34 Score=311.33 Aligned_cols=244 Identities=23% Similarity=0.308 Sum_probs=203.8
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcc------hHHHHHHHHHHHHhcCCCCeeeEEeeeecCCce
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCAS------TLKSFEAECEVIKNIRHRNLVKIISSCSNDDFK 797 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~------~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~ 797 (985)
.++|...+.||+|+||.||+|+.. +++.||+|+++..... ..+.+.+|++++++++||||+++++++.+.+..
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~ 83 (283)
T 3bhy_A 4 EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDV 83 (283)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hhhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeE
Confidence 357889999999999999999976 7899999998755321 357789999999999999999999999999999
Q ss_pred EEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCC----cEEEecccCc
Q 001988 798 ALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDM----VAHLSDFGMA 873 (985)
Q Consensus 798 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~----~~kl~DfGla 873 (985)
++||||+++++|.+++.... .+++..+..++.|++.||+|| |++||+||||||+||+++.++ .+||+|||++
T Consensus 84 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~i~~~l~~l---H~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~ 159 (283)
T 3bhy_A 84 VLILELVSGGELFDFLAEKE-SLTEDEATQFLKQILDGVHYL---HSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIA 159 (283)
T ss_dssp EEEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEESCSSSSSCCEEECCCTTC
T ss_pred EEEEeecCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HhCCccCCCCChHHEEEecCCCCCCceEEEecccc
Confidence 99999999999999997653 689999999999999999999 788999999999999998877 8999999999
Q ss_pred eeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh---------------hH
Q 001988 874 KLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA---------------AK 938 (985)
Q Consensus 874 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~---------------~~ 938 (985)
+...... ......||+.|+|||.+....++.++|+ |++|+++++++++..+........ ..
T Consensus 160 ~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (283)
T 3bhy_A 160 HKIEAGN---EFKNIFGTPEFVAPEIVNYEPLGLEADM-WSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYF 235 (283)
T ss_dssp EECC-----------CCCGGGCCHHHHTTCCCCTHHHH-HHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCHHHH
T ss_pred eeccCCC---cccccCCCcCccCcceecCCCCCcchhh-hhHHHHHHHHHHCCCCCCCcchHHHHHHhHhcccCCcchhc
Confidence 8764322 2234569999999999999999999999 999999999999887654322111 11
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHhHhh
Q 001988 939 EQCLLSIFSLALECTMESPEKRIDAKDTIT--RLLKIRDT 976 (985)
Q Consensus 939 ~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~--~L~~i~~~ 976 (985)
..+++.+.+++.+|+..||.+||++.|+++ .++.++++
T Consensus 236 ~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~~ 275 (283)
T 3bhy_A 236 SNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRRR 275 (283)
T ss_dssp TTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHHHHH
Confidence 234677999999999999999999999997 45555443
No 211
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=4.5e-35 Score=328.32 Aligned_cols=245 Identities=17% Similarity=0.166 Sum_probs=197.5
Q ss_pred hcCccCCceeeccCceeEEEEEEc----CCcEEEEEEeccCCcch-----------HHHHHHHHHHHHhcCCCCeeeEEe
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE----DGVEIAIKVFHPQCAST-----------LKSFEAECEVIKNIRHRNLVKIIS 789 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vAvK~~~~~~~~~-----------~~~~~~E~~il~~l~h~niv~l~~ 789 (985)
.++|...+.||+|+||.||+|+.. ++..||+|++....... ...+.+|+.+++.++||||+++++
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~ 115 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG 115 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence 467899999999999999999975 57789999987653221 123567888899999999999999
Q ss_pred eeec----CCceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCC--
Q 001988 790 SCSN----DDFKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDM-- 863 (985)
Q Consensus 790 ~~~~----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~-- 863 (985)
++.. ....++||||+ +++|.+++...+ .+++..++.++.|++.||+|| |++||+||||||+||+++.++
T Consensus 116 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~L---H~~~ivH~Dlkp~NIll~~~~~~ 190 (345)
T 2v62_A 116 SGLTEFKGRSYRFMVMERL-GIDLQKISGQNG-TFKKSTVLQLGIRMLDVLEYI---HENEYVHGDIKAANLLLGYKNPD 190 (345)
T ss_dssp EEEEESSSCEEEEEEEECE-EEEHHHHCBGGG-BCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEEESSSTT
T ss_pred ccccccCCCcEEEEEEecc-CCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HhCCeeCCCcCHHHEEEccCCCC
Confidence 9987 67889999999 999999998765 789999999999999999999 788999999999999999887
Q ss_pred cEEEecccCceeccCCCCc-----ceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh-h-
Q 001988 864 VAHLSDFGMAKLLSGEDES-----TMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF-A- 936 (985)
Q Consensus 864 ~~kl~DfGla~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~-~- 936 (985)
.+||+|||+++.+...... .......||+.|+|||.+.+..++.++|+ |++|+++++++++..++...... .
T Consensus 191 ~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di-~slG~il~ell~g~~pf~~~~~~~~~ 269 (345)
T 2v62_A 191 QVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDV-EILGYCMLRWLCGKLPWEQNLKDPVA 269 (345)
T ss_dssp SEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHH-HHHHHHHHHHHHSSCTTGGGTTCHHH
T ss_pred cEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhH-HHHHHHHHHHHhCCCCccccccccHH
Confidence 9999999999886432211 11234579999999999999999999999 99999999999998776331100 0
Q ss_pred -----------hHH---------HHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHh
Q 001988 937 -----------AKE---------QCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRD 975 (985)
Q Consensus 937 -----------~~~---------~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~ 975 (985)
.+. .+++++.+++.+||..||++||++.++++.|++..-
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~ 328 (345)
T 2v62_A 270 VQTAKTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGI 328 (345)
T ss_dssp HHHHHHHHHHTTTHHHHHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCC
T ss_pred HHHHHHhhcccccHHHHhhccccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccCC
Confidence 011 345589999999999999999999999999987653
No 212
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=1.3e-34 Score=330.35 Aligned_cols=232 Identities=21% Similarity=0.250 Sum_probs=188.5
Q ss_pred cCccCC-ceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHh-cCCCCeeeEEeeeec----CCceE
Q 001988 726 DNFAEN-NIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKN-IRHRNLVKIISSCSN----DDFKA 798 (985)
Q Consensus 726 ~~~~~~-~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~-l~h~niv~l~~~~~~----~~~~~ 798 (985)
++|... +.||+|+||.||+|... +++.||||+++.. ..+.+|++++.+ .+||||+++++++.. .+..+
T Consensus 61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~ 135 (400)
T 1nxk_A 61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL 135 (400)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEE
Confidence 456655 68999999999999875 7899999998633 467789998755 489999999999865 56789
Q ss_pred EEEeccCCCChHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcC---CCcEEEecccCce
Q 001988 799 LVLEYMSNGSLEDCLHSSN-CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDE---DMVAHLSDFGMAK 874 (985)
Q Consensus 799 lv~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~---~~~~kl~DfGla~ 874 (985)
+||||++||+|.+++.... ..+++..+..++.||+.||+|| |++||+||||||+||+++. ++.+||+|||+++
T Consensus 136 lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~L---H~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~ 212 (400)
T 1nxk_A 136 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYL---HSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAK 212 (400)
T ss_dssp EEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHH---HHTTEECCCCCGGGEEESSSSTTCCEEECCCTTCE
T ss_pred EEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH---HHCCccccCcCcceEEEecCCCCccEEEEeccccc
Confidence 9999999999999998753 4689999999999999999999 7899999999999999997 7899999999998
Q ss_pred eccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh-------------------
Q 001988 875 LLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF------------------- 935 (985)
Q Consensus 875 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~------------------- 935 (985)
...... .....+||+.|+|||++.+..++.++|+ |++|++++++++|..++......
T Consensus 213 ~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Di-wslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~~~~~ 288 (400)
T 1nxk_A 213 ETTSHN---SLTTPCYTPYYVAPEVLGPEKYDKSCDM-WSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPN 288 (400)
T ss_dssp ECC--------------CTTCCGGGSCCCCSSSHHHH-HHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCCCCCT
T ss_pred ccCCCC---ccccCCCCCCccCHhhcCCCCCCCcccH-HHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCcccCCC
Confidence 764222 2334579999999999999999999999 99999999999988765432110
Q ss_pred hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 001988 936 AAKEQCLLSIFSLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 936 ~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
.....+++++.+++.+||..||++||++.|+++.
T Consensus 289 ~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h 322 (400)
T 1nxk_A 289 PEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 322 (400)
T ss_dssp TTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred cccccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 0112356789999999999999999999999874
No 213
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=8e-35 Score=327.30 Aligned_cols=246 Identities=14% Similarity=0.112 Sum_probs=204.6
Q ss_pred hcCccCCceeeccCceeEEEEEEcC---------CcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeee---------
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLED---------GVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVK--------- 786 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~~---------~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~--------- 786 (985)
.++|...+.||+|+||.||+|+... ++.||+|++... ..+.+|++++++++||||++
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 115 (352)
T 2jii_A 41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTP 115 (352)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence 3688999999999999999998763 788999998754 46789999999999999987
Q ss_pred ------EEeeeec-CCceEEEEeccCCCChHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEE
Q 001988 787 ------IISSCSN-DDFKALVLEYMSNGSLEDCLHSS-NCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVL 858 (985)
Q Consensus 787 ------l~~~~~~-~~~~~lv~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nil 858 (985)
+++++.. ++..++||||+ +++|.+++... ...+++..+..++.|++.||+|| |++||+||||||+||+
T Consensus 116 ~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~L---H~~~ivH~Dikp~NIl 191 (352)
T 2jii_A 116 LLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFL---HENEYVHGNVTAENIF 191 (352)
T ss_dssp TCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHH---HHTTCBCSCCCGGGEE
T ss_pred ccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHH---HhCCccCCCCCHHHEE
Confidence 5667765 67889999999 99999999875 34789999999999999999999 7889999999999999
Q ss_pred EcCCC--cEEEecccCceeccCCCCc-----ceecccccccccccccccccCccchhhhcccccccchhhhcccccccCc
Q 001988 859 LDEDM--VAHLSDFGMAKLLSGEDES-----TMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGE 931 (985)
Q Consensus 859 l~~~~--~~kl~DfGla~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~ 931 (985)
++.++ .+||+|||+++.+...... .......||+.|+|||.+.+..++.++|+ |++|+++++++++..++..
T Consensus 192 ~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di-~slG~il~el~~g~~pf~~ 270 (352)
T 2jii_A 192 VDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDL-QSLGYCMLKWLYGFLPWTN 270 (352)
T ss_dssp EETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHH-HHHHHHHHHHHHSCCTTGG
T ss_pred EcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhH-HHHHHHHHHHHhCCCCccc
Confidence 99998 9999999999876432211 11233479999999999999999999999 9999999999998876554
Q ss_pred ch-hhhhH---------------------HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhccc
Q 001988 932 EK-HFAAK---------------------EQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLSKR 980 (985)
Q Consensus 932 ~~-~~~~~---------------------~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~~~ 980 (985)
.. ..... ..+++++.+++.+||..||.+||++.++++.|+++.+.....
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~~~ 341 (352)
T 2jii_A 271 CLPNTEDIMKQKQKFVDKPGPFVGPCGHWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDLRVS 341 (352)
T ss_dssp GTTCHHHHHHHHHHHHHSCCCEECTTSCEECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTCC
T ss_pred CCcCHHHHHHHHHhccCChhhhhhhccccCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhcCCC
Confidence 32 11100 012678999999999999999999999999999998876543
No 214
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=6.4e-35 Score=324.75 Aligned_cols=239 Identities=21% Similarity=0.306 Sum_probs=189.9
Q ss_pred HHHhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcc--hHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceE
Q 001988 722 LRATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCAS--TLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKA 798 (985)
Q Consensus 722 ~~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~--~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~ 798 (985)
....++|...+.||+|+||.||+|+.. +++.||||+++..... ....+.+|++++++++||||+++++++.+.+..+
T Consensus 30 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 109 (329)
T 3gbz_A 30 ATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLH 109 (329)
T ss_dssp --CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEE
T ss_pred ccchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEE
Confidence 345678999999999999999999865 7899999999755332 2456789999999999999999999999999999
Q ss_pred EEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEE-----cCCCcEEEecccCc
Q 001988 799 LVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLL-----DEDMVAHLSDFGMA 873 (985)
Q Consensus 799 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill-----~~~~~~kl~DfGla 873 (985)
+||||++ |+|.+++.... .+++..+..++.|++.||+|| |++||+||||||+||++ +.++.+||+|||++
T Consensus 110 lv~e~~~-~~L~~~~~~~~-~~~~~~~~~i~~ql~~~l~~L---H~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a 184 (329)
T 3gbz_A 110 LIFEYAE-NDLKKYMDKNP-DVSMRVIKSFLYQLINGVNFC---HSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLA 184 (329)
T ss_dssp EEEECCS-EEHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCCGGGEEEEC-----CCEEEECCTTHH
T ss_pred EEEecCC-CCHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHH---HhCCEECCCCCHHHEEEecCCCCccceEEECcCCCc
Confidence 9999997 59999998764 589999999999999999999 78899999999999999 45556999999999
Q ss_pred eeccCCCCcceecccccccccccccccccC-ccchhhhcccccccchhhhcccccccCcchhhhhH--------------
Q 001988 874 KLLSGEDESTMRTQTLATIGYMAPDEIFVG-ELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAAK-------------- 938 (985)
Q Consensus 874 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~~-------------- 938 (985)
+.+.... .......||+.|+|||.+.+. .++.++|+ |++|+++++++++..+..........
T Consensus 185 ~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di-wslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~ 261 (329)
T 3gbz_A 185 RAFGIPI--RQFTHEIITLWYRPPEILLGSRHYSTSVDI-WSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTT 261 (329)
T ss_dssp HHHC-------------CCTTCCHHHHTTCCCCCTHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTT
T ss_pred cccCCcc--cccCCCcCCccccCHHHhcCCCCCCcHHHH-HHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhh
Confidence 8764322 223345689999999998874 48999999 99999999999988765433211110
Q ss_pred ---------------------------HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 939 ---------------------------EQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 939 ---------------------------~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
..+++++.+++.+|+..||.+|||+.|+++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 318 (329)
T 3gbz_A 262 WPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE 318 (329)
T ss_dssp STTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred hhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence 013467889999999999999999999975
No 215
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=1.9e-34 Score=332.89 Aligned_cols=195 Identities=24% Similarity=0.353 Sum_probs=164.5
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc--chHHHHHHHHHHHHhcCCCCeeeEEeeeecC-----Cc
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA--STLKSFEAECEVIKNIRHRNLVKIISSCSND-----DF 796 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~h~niv~l~~~~~~~-----~~ 796 (985)
.++|...+.||+|+||.||+|+.. +++.||||++..... ...+.+.+|++++++++||||+++++++... +.
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 104 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE 104 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence 478999999999999999999865 788999999976432 3456789999999999999999999999766 56
Q ss_pred eEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceec
Q 001988 797 KALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLL 876 (985)
Q Consensus 797 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~ 876 (985)
.|+||||++ |+|.+++... ..+++..+..++.||+.||+|| |++||+||||||+||+++.++.+||+|||+|+..
T Consensus 105 ~~lv~e~~~-~~L~~~~~~~-~~l~~~~~~~i~~qil~aL~~L---H~~givHrDlkp~NILl~~~~~~kL~DFGla~~~ 179 (432)
T 3n9x_A 105 LYIVLEIAD-SDLKKLFKTP-IFLTEEHIKTILYNLLLGENFI---HESGIIHRDLKPANCLLNQDCSVKVCDFGLARTI 179 (432)
T ss_dssp EEEEEECCS-EEHHHHHHSS-CCCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEEEEecCC-cCHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHH---HHCCCCCCCCCHHHeEECCCCCEEEccCCCcccc
Confidence 899999996 5999999865 3689999999999999999999 7889999999999999999999999999999987
Q ss_pred cCCCCc--------------------ceeccccccccccccccc-ccCccchhhhcccccccchhhhccc
Q 001988 877 SGEDES--------------------TMRTQTLATIGYMAPDEI-FVGELSLKRWVNDLLPVSLVEVVDK 925 (985)
Q Consensus 877 ~~~~~~--------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~dv~~~~g~~~~~i~~~ 925 (985)
...... ......+||+.|+|||.+ ....++.++|+ |++|+++++++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~Di-wSlG~il~ell~g 248 (432)
T 3n9x_A 180 NSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDI-WSTGCIFAELLNM 248 (432)
T ss_dssp -------------------------------CCCCCTTCCHHHHTTCSCCCTHHHH-HHHHHHHHHHHTT
T ss_pred cccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCccccc-chHHHHHHHHHhc
Confidence 533211 123556799999999986 56669999999 9999999999963
No 216
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=2e-34 Score=325.57 Aligned_cols=245 Identities=18% Similarity=0.248 Sum_probs=197.7
Q ss_pred cCHHHHHHHhcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcc-----------hHHHHHHHHHHHHhcCCCCe
Q 001988 716 FSYFELLRATDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCAS-----------TLKSFEAECEVIKNIRHRNL 784 (985)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~-----------~~~~~~~E~~il~~l~h~ni 784 (985)
....++....++|...+.||+|+||.||+|...+++.||||++...... ..+.+.+|++++++++||||
T Consensus 12 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i 91 (362)
T 3pg1_A 12 DLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNI 91 (362)
T ss_dssp HHHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTB
T ss_pred HHHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCc
Confidence 3456778889999999999999999999999888999999998654221 13678999999999999999
Q ss_pred eeEEeeeec-----CCceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEE
Q 001988 785 VKIISSCSN-----DDFKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLL 859 (985)
Q Consensus 785 v~l~~~~~~-----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill 859 (985)
+++++++.. ....++||||++ |+|.+++......+++..+..++.|++.||+|| |++||+||||||+||++
T Consensus 92 v~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~l---H~~~ivH~Dlkp~NIl~ 167 (362)
T 3pg1_A 92 LGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVL---HEAGVVHRDLHPGNILL 167 (362)
T ss_dssp CCCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHH---HHTTCCCCCCCGGGEEE
T ss_pred cceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH---HHCcCEecCCChHHEEE
Confidence 999999843 346799999997 699999887766899999999999999999999 78899999999999999
Q ss_pred cCCCcEEEecccCceeccCCCCcceeccccccccccccccccc-CccchhhhcccccccchhhhcccccccCcchhhhh-
Q 001988 860 DEDMVAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFV-GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA- 937 (985)
Q Consensus 860 ~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~- 937 (985)
+.++.+||+|||+++..... .......||+.|+|||.+.+ ..++.++|+ |++|+++++++++..+.........
T Consensus 168 ~~~~~~kl~Dfg~~~~~~~~---~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di-wslG~il~~l~~g~~pf~~~~~~~~~ 243 (362)
T 3pg1_A 168 ADNNDITICDFNLAREDTAD---ANKTHYVTHRWYRAPELVMQFKGFTKLVDM-WSAGCVMAEMFNRKALFRGSTFYNQL 243 (362)
T ss_dssp CTTCCEEECCTTC------------------CGGGCCHHHHTTCTTCCTHHHH-HHHHHHHHHHHHSSCSCCCSSHHHHH
T ss_pred cCCCCEEEEecCcccccccc---cccceecccceecCcHHhcCCCCCCcHhHH-HhHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 99999999999999864322 22334569999999999877 778999999 9999999999998876544321111
Q ss_pred ------------------------------------------HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 938 ------------------------------------------KEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 938 ------------------------------------------~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
....++.+.+++.+|+..||.+|||+.|+++
T Consensus 244 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 316 (362)
T 3pg1_A 244 NKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALR 316 (362)
T ss_dssp HHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHc
Confidence 0112456889999999999999999999986
No 217
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=2.3e-34 Score=346.38 Aligned_cols=240 Identities=22% Similarity=0.296 Sum_probs=198.3
Q ss_pred ceeeccCceeEEEEEEc---CCcEEEEEEeccCCc--chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEeccCC
Q 001988 732 NIIGIGGFGSVYRARLE---DGVEIAIKVFHPQCA--STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLEYMSN 806 (985)
Q Consensus 732 ~~ig~G~~g~V~~~~~~---~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e~~~~ 806 (985)
+.||+|+||.||+|.+. +++.||||+++.... ...+++.+|++++++++|||||++++++.. +..++||||+++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence 47999999999999653 567899999976532 235789999999999999999999999975 457899999999
Q ss_pred CChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCCc-cee
Q 001988 807 GSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDES-TMR 885 (985)
Q Consensus 807 gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~~-~~~ 885 (985)
|+|.+++.... .+++..+..++.||+.||+|| |++||+||||||+|||++.++.+||+|||+++.+...... ...
T Consensus 454 g~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~yL---H~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~ 529 (635)
T 4fl3_A 454 GPLNKYLQQNR-HVKDKNIIELVHQVSMGMKYL---EESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQ 529 (635)
T ss_dssp EEHHHHHHHCT-TCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC--------
T ss_pred CCHHHHHhhCC-CCCHHHHHHHHHHHHHHHHHH---HHCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccccc
Confidence 99999997653 689999999999999999999 7889999999999999999999999999999877543321 222
Q ss_pred cccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhh------------hhHHHHHHHHHHHHHHc
Q 001988 886 TQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHF------------AAKEQCLLSIFSLALEC 952 (985)
Q Consensus 886 ~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~------------~~~~~~~~~l~~l~~~c 952 (985)
....+|+.|+|||.+....++.++|+ |++|++++++++ +..++...... ..+..+++++.+++.+|
T Consensus 530 ~~~~~t~~y~APE~~~~~~~~~~sDv-wSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~c 608 (635)
T 4fl3_A 530 THGKWPVKWYAPECINYYKFSSKSDV-WSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLC 608 (635)
T ss_dssp -----CGGGSCHHHHHHCCCCHHHHH-HHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHH
T ss_pred cCCCCceeeeChhhhcCCCCCcHHHH-HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHH
Confidence 33457889999999999999999999 999999999998 77665443211 12334678899999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhHhhh
Q 001988 953 TMESPEKRIDAKDTITRLLKIRDTL 977 (985)
Q Consensus 953 l~~~P~~RPt~~ev~~~L~~i~~~~ 977 (985)
|+.||++||++.+++++|+++..+.
T Consensus 609 l~~dP~~RPs~~~l~~~L~~~~~~l 633 (635)
T 4fl3_A 609 WTYDVENRPGFAAVELRLRNYYYDV 633 (635)
T ss_dssp TCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred cCCCHhHCcCHHHHHHHHHHHHHHh
Confidence 9999999999999999999887654
No 218
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=2.6e-34 Score=314.62 Aligned_cols=238 Identities=19% Similarity=0.231 Sum_probs=203.8
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC---cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC---ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~---~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv 800 (985)
.++|...+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv 93 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 93 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEE
Confidence 467889999999999999999976 68889999987542 22456788999999999999999999999999999999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCC
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGED 880 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~ 880 (985)
|||+++++|.+++.... .+++..+..++.|+++||+|| |++||+||||||+||+++.++.+||+|||+++......
T Consensus 94 ~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~l---H~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~ 169 (294)
T 2rku_A 94 LELCRRRSLLELHKRRK-ALTEPEARYYLRQIVLGCQYL---HRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG 169 (294)
T ss_dssp EECCTTCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred EecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HHCCccccCCChHhEEEcCCCCEEEEeccCceecccCc
Confidence 99999999999887653 689999999999999999999 78899999999999999999999999999998864322
Q ss_pred CcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh-----------hHHHHHHHHHHHH
Q 001988 881 ESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA-----------AKEQCLLSIFSLA 949 (985)
Q Consensus 881 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~l~~l~ 949 (985)
. ......||+.|+|||.+.+..++.++|+ |++|+.+++++++..+........ .+..++.++.+++
T Consensus 170 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 246 (294)
T 2rku_A 170 E--RKKVLCGTPNYIAPEVLSKKGHSFEVDV-WSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPKHINPVAASLI 246 (294)
T ss_dssp C--CBCCCCSCCSSCCHHHHTTSCBCTHHHH-HHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCTTSCHHHHHHH
T ss_pred c--ccccccCCCCcCCcchhccCCCCchhhH-HHHHHHHHHHHhCCCCCCCCCHHHHHHHHhhccCCCccccCHHHHHHH
Confidence 2 2234569999999999999999999999 999999999999887655432111 1223457789999
Q ss_pred HHccCCCCCCCCCHHHHHHH
Q 001988 950 LECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 950 ~~cl~~~P~~RPt~~ev~~~ 969 (985)
.+||..||++||++.|+++.
T Consensus 247 ~~~l~~~p~~Rps~~~ll~~ 266 (294)
T 2rku_A 247 QKMLQTDPTARPTINELLND 266 (294)
T ss_dssp HHHTCSSGGGSCCGGGGGGS
T ss_pred HHHcccChhhCcCHHHHhhC
Confidence 99999999999999999874
No 219
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=6.2e-34 Score=330.61 Aligned_cols=246 Identities=20% Similarity=0.207 Sum_probs=207.4
Q ss_pred hcCccCCceeeccCceeEEEEEE-cCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCC-CCeeeEEeeeecCCceEEEEe
Q 001988 725 TDNFAENNIIGIGGFGSVYRARL-EDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRH-RNLVKIISSCSNDDFKALVLE 802 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h-~niv~l~~~~~~~~~~~lv~e 802 (985)
.++|...+.||+|+||.||+|+. .+++.||||++..... ..++.+|+++++.++| +++..+..++...+..++|||
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme 83 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD 83 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence 46899999999999999999996 4789999998875532 2457899999999987 566667777778888999999
Q ss_pred ccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEE---cCCCcEEEecccCceeccCC
Q 001988 803 YMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLL---DEDMVAHLSDFGMAKLLSGE 879 (985)
Q Consensus 803 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill---~~~~~~kl~DfGla~~~~~~ 879 (985)
|+ +++|.+++......+++.+++.++.||+.||+|| |++|||||||||+|||+ +.++.+||+|||+++.+...
T Consensus 84 ~~-g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yL---H~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~ 159 (483)
T 3sv0_A 84 LL-GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFV---HSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDT 159 (483)
T ss_dssp CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCT
T ss_pred CC-CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH---HHCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCC
Confidence 99 9999999987666899999999999999999999 78899999999999999 68999999999999987644
Q ss_pred CCcc-----eecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh-------------------
Q 001988 880 DEST-----MRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF------------------- 935 (985)
Q Consensus 880 ~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~------------------- 935 (985)
.... ......||+.|+|||.+.+..++.++|+ |++|+++++++++..++......
T Consensus 160 ~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDv-wSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~ 238 (483)
T 3sv0_A 160 STHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDL-ESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATSIE 238 (483)
T ss_dssp TTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHH-HHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHHSCHH
T ss_pred ccccccccccccccCCCccccCHHHhcCCCCChHHHH-HHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhccccccHH
Confidence 3221 1235679999999999999999999999 99999999999998876542110
Q ss_pred hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhh
Q 001988 936 AAKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTL 977 (985)
Q Consensus 936 ~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~ 977 (985)
.....+++++.+++..||..+|++||++.++++.|+++....
T Consensus 239 ~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~~ 280 (483)
T 3sv0_A 239 ALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIRE 280 (483)
T ss_dssp HHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHHc
Confidence 011234678999999999999999999999999999987643
No 220
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=3.8e-34 Score=321.78 Aligned_cols=240 Identities=22% Similarity=0.315 Sum_probs=197.6
Q ss_pred hcCccCCceeeccCceeEEEEEE-cCCcEEEEEEeccCCcc--hHHHHHHHHHHHHhcCCCCeeeEEeeeec--------
Q 001988 725 TDNFAENNIIGIGGFGSVYRARL-EDGVEIAIKVFHPQCAS--TLKSFEAECEVIKNIRHRNLVKIISSCSN-------- 793 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vAvK~~~~~~~~--~~~~~~~E~~il~~l~h~niv~l~~~~~~-------- 793 (985)
.++|+..+.||+|+||.||+|+. .+++.||||++...... ....+.+|++++++++||||+++++++..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 95 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 95 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence 46899999999999999999997 47899999998655322 34578899999999999999999999976
Q ss_pred CCceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCc
Q 001988 794 DDFKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMA 873 (985)
Q Consensus 794 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla 873 (985)
.+..++||||+++ ++.+.+......+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||++
T Consensus 96 ~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~L---H~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a 171 (351)
T 3mi9_A 96 KGSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYI---HRNKILHRDMKAANVLITRDGVLKLADFGLA 171 (351)
T ss_dssp -CEEEEEEECCSE-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred CceEEEEEeccCC-CHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH---HHCCeeCCCCCHHHEEEcCCCCEEEccchhc
Confidence 3468999999975 88888877666799999999999999999999 7899999999999999999999999999999
Q ss_pred eeccCCCC--cceeccccccccccccccccc-CccchhhhcccccccchhhhcccccccCcchhhhhH------------
Q 001988 874 KLLSGEDE--STMRTQTLATIGYMAPDEIFV-GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAAK------------ 938 (985)
Q Consensus 874 ~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~-~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~~------------ 938 (985)
+.+..... ........||+.|+|||.+.+ ..++.++|+ |++|+++++++++..+..........
T Consensus 172 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di-wslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~ 250 (351)
T 3mi9_A 172 RAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDL-WGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITP 250 (351)
T ss_dssp EECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHH-HHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCT
T ss_pred ccccccccccccccCCcccccCccCchhhcCCCCCCcHhHH-HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCh
Confidence 88753222 122344568999999998876 457999999 99999999999987765432111100
Q ss_pred --------------------------H-----HHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 001988 939 --------------------------E-----QCLLSIFSLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 939 --------------------------~-----~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
+ ...+.+.+++.+|+..||++||++.|+++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 312 (351)
T 3mi9_A 251 EVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH 312 (351)
T ss_dssp TTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred hhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCC
Confidence 0 014568899999999999999999999863
No 221
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=7.9e-35 Score=320.08 Aligned_cols=239 Identities=22% Similarity=0.303 Sum_probs=198.6
Q ss_pred HhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEe
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLE 802 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e 802 (985)
..++|+..+.||+|+||.||+|+.. +++.||+|++..........+.+|++++++++||||+++++++...+..++|||
T Consensus 17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 96 (302)
T 2j7t_A 17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIE 96 (302)
T ss_dssp GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEE
T ss_pred CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEE
Confidence 3578899999999999999999976 689999999987766667889999999999999999999999999999999999
Q ss_pred ccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCCc
Q 001988 803 YMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDES 882 (985)
Q Consensus 803 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~~ 882 (985)
|+++++|.+++......+++..+..++.|++.||+|| |+.|++||||||+||+++.++.+||+|||++...... .
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l---H~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~--~ 171 (302)
T 2j7t_A 97 FCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFL---HSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKT--L 171 (302)
T ss_dssp CCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH---HHTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHH--H
T ss_pred eCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHH---hcCCcccCCCCHHHEEECCCCCEEEEECCCCcccccc--c
Confidence 9999999999887666799999999999999999999 7889999999999999999999999999987643211 1
Q ss_pred ceecccccccccccccccc-----cCccchhhhcccccccchhhhcccccccCcchhh--------------hhHHHHHH
Q 001988 883 TMRTQTLATIGYMAPDEIF-----VGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF--------------AAKEQCLL 943 (985)
Q Consensus 883 ~~~~~~~gt~~y~aPE~~~-----~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~--------------~~~~~~~~ 943 (985)
.......||+.|+|||.+. ...++.++|+ |++|+++++++++..+....... ..+..++.
T Consensus 172 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di-~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (302)
T 2j7t_A 172 QKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADI-WSLGITLIEMAQIEPPHHELNPMRVLLKIAKSDPPTLLTPSKWSV 250 (302)
T ss_dssp HC-----CCGGGCCHHHHHHHHTTSTTTTTHHHH-HHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSGGGSCH
T ss_pred cccccccCChhhcCCeeeccccCCCCCCchhhhH-HHHHHHHHHHhcCCCCCccCCHHHHHHHHhccCCcccCCccccCH
Confidence 1123346999999999884 6678899999 99999999999988765433211 11234567
Q ss_pred HHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 944 SIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 944 ~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
++.+++.+||..||.+||++.|+++
T Consensus 251 ~l~~li~~~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 251 EFRDFLKIALDKNPETRPSAAQLLE 275 (302)
T ss_dssp HHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred HHHHHHHHHcccChhhCCCHHHHhc
Confidence 8999999999999999999999975
No 222
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=321.22 Aligned_cols=250 Identities=23% Similarity=0.254 Sum_probs=191.4
Q ss_pred HhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcC-CCCeeeEEeeee--------c
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIR-HRNLVKIISSCS--------N 793 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~-h~niv~l~~~~~--------~ 793 (985)
...+|+..+.||+|+||.||+|+.. +++.||||++........+.+.+|+.+++++. ||||+++++++. .
T Consensus 26 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~ 105 (337)
T 3ll6_A 26 GELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTG 105 (337)
T ss_dssp TTEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTS
T ss_pred cCceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccC
Confidence 3457899999999999999999965 78999999987665556678899999999996 999999999984 3
Q ss_pred CCceEEEEeccCCCChHHHhhc--CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCC--eEeCCCCCCCEEEcCCCcEEEec
Q 001988 794 DDFKALVLEYMSNGSLEDCLHS--SNCALNIFCRLNIMIDIASALEYLHFGHSTP--IIHCDLKPSNVLLDEDMVAHLSD 869 (985)
Q Consensus 794 ~~~~~lv~e~~~~gsL~~~l~~--~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~--ivHrDlk~~Nill~~~~~~kl~D 869 (985)
....++||||++ |+|.+++.. ....+++..++.++.|++.||+|| |+.+ |+||||||+||+++.++.+||+|
T Consensus 106 ~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~L---H~~~~~ivH~Dikp~NIl~~~~~~~kl~D 181 (337)
T 3ll6_A 106 QAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHM---HRQKPPIIHRDLKVENLLLSNQGTIKLCD 181 (337)
T ss_dssp SEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHH---HTSSSCCBCCCCCGGGCEECTTSCEEBCC
T ss_pred CceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH---HhCCCCEEEccCCcccEEECCCCCEEEec
Confidence 345789999995 799998865 344689999999999999999999 6778 99999999999999999999999
Q ss_pred ccCceeccCCCCcc----------eeccccccccccccccc---ccCccchhhhcccccccchhhhcccccccCcchhhh
Q 001988 870 FGMAKLLSGEDEST----------MRTQTLATIGYMAPDEI---FVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA 936 (985)
Q Consensus 870 fGla~~~~~~~~~~----------~~~~~~gt~~y~aPE~~---~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~ 936 (985)
||+++.+....... ......||+.|+|||.+ ....++.++|+ |++|+++++++++..+........
T Consensus 182 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv-~slG~il~el~~g~~p~~~~~~~~ 260 (337)
T 3ll6_A 182 FGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDI-WALGCILYLLCFRQHPFEDGAKLR 260 (337)
T ss_dssp CTTCBCCSSCC-------------------------------CCTTSCSSHHHHH-HHHHHHHHHHHHSSCCC-------
T ss_pred CccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhH-HHHHHHHHHHHhCCCCCcchhHHH
Confidence 99998765432211 11234589999999998 56778899999 999999999999887654321111
Q ss_pred ---------hHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhc
Q 001988 937 ---------AKEQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLS 978 (985)
Q Consensus 937 ---------~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~ 978 (985)
....++..+.+++.+||..||.+||++.|+++.|+++.....
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~~ 311 (337)
T 3ll6_A 261 IVNGKYSIPPHDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAARN 311 (337)
T ss_dssp -----CCCCTTCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHTT
T ss_pred hhcCcccCCcccccchHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhccC
Confidence 112234568899999999999999999999999999987543
No 223
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=9.1e-34 Score=319.78 Aligned_cols=242 Identities=24% Similarity=0.332 Sum_probs=203.7
Q ss_pred HHHHHHhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcc--------hHHHHHHHHHHHHhc-CCCCeeeEE
Q 001988 719 FELLRATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCAS--------TLKSFEAECEVIKNI-RHRNLVKII 788 (985)
Q Consensus 719 ~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~--------~~~~~~~E~~il~~l-~h~niv~l~ 788 (985)
.......++|...+.||+|+||.||+|+.. +|+.||||+++..... ..+.+.+|+.+++++ +||||++++
T Consensus 87 ~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~ 166 (365)
T 2y7j_A 87 AAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLI 166 (365)
T ss_dssp HHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEE
T ss_pred hhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEE
Confidence 334456678999999999999999999975 7999999998765321 135678999999999 799999999
Q ss_pred eeeecCCceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEe
Q 001988 789 SSCSNDDFKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLS 868 (985)
Q Consensus 789 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~ 868 (985)
+++...+..++||||+++++|.+++.... .+++..+..++.|++.||+|| |+.||+||||||+||+++.++.+||+
T Consensus 167 ~~~~~~~~~~lv~e~~~g~~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~~L---H~~gi~H~Dlkp~NIl~~~~~~ikl~ 242 (365)
T 2y7j_A 167 DSYESSSFMFLVFDLMRKGELFDYLTEKV-ALSEKETRSIMRSLLEAVSFL---HANNIVHRDLKPENILLDDNMQIRLS 242 (365)
T ss_dssp EEEEBSSEEEEEECCCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEECTTCCEEEC
T ss_pred EEEeeCCEEEEEEEeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HhCCeecCCCCHHHEEECCCCCEEEE
Confidence 99999999999999999999999998653 689999999999999999999 78899999999999999999999999
Q ss_pred cccCceeccCCCCcceeccccccccccccccccc------CccchhhhcccccccchhhhcccccccCcchhhh------
Q 001988 869 DFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFV------GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA------ 936 (985)
Q Consensus 869 DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~------ 936 (985)
|||++..+.... .....+||+.|+|||.+.+ ..++.++|+ |++|+++++++++..++.......
T Consensus 243 DfG~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di-~slG~il~ell~g~~pf~~~~~~~~~~~i~ 318 (365)
T 2y7j_A 243 DFGFSCHLEPGE---KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDL-WACGVILFTLLAGSPPFWHRRQILMLRMIM 318 (365)
T ss_dssp CCTTCEECCTTC---CBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHH
T ss_pred ecCcccccCCCc---ccccCCCCCCccChhhccccccccCcCCCchhhH-HhHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Confidence 999998875332 2234579999999998863 357889999 999999999999987654322111
Q ss_pred ---------hHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 937 ---------AKEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 937 ---------~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
....++.++.+++.+|+..||++||++.|+++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~ 359 (365)
T 2y7j_A 319 EGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQ 359 (365)
T ss_dssp HTCCCCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred hCCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 11234567999999999999999999999986
No 224
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=2.7e-34 Score=320.59 Aligned_cols=238 Identities=19% Similarity=0.231 Sum_probs=203.7
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC---cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC---ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~---~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv 800 (985)
.++|...+.||+|+||.||+|+.. +++.||+|++.... ....+.+.+|+.++++++||||+++++++.+.+..++|
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 119 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV 119 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence 467889999999999999999976 67899999987542 23456788999999999999999999999999999999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCC
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGED 880 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~ 880 (985)
|||+++++|.+++.... .+++..+..++.|+++||+|| |++||+||||||+||+++.++.+||+|||+++......
T Consensus 120 ~e~~~~~~L~~~~~~~~-~l~~~~~~~i~~qi~~aL~~L---H~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~ 195 (335)
T 2owb_A 120 LELCRRRSLLELHKRRK-ALTEPEARYYLRQIVLGCQYL---HRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDG 195 (335)
T ss_dssp ECCCTTCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred EecCCCCCHHHHHhccC-CCCHHHHHHHHHHHHHHHHHH---HHCCCEecCCCchhEEEcCCCCEEEeeccCceecccCc
Confidence 99999999999887653 689999999999999999999 78899999999999999999999999999998864322
Q ss_pred CcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh-----------hHHHHHHHHHHHH
Q 001988 881 ESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA-----------AKEQCLLSIFSLA 949 (985)
Q Consensus 881 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~l~~l~ 949 (985)
. ......||+.|+|||.+.+..++.++|+ |++|+++++++++..++....... .+..++.++.+++
T Consensus 196 ~--~~~~~~gt~~y~aPE~~~~~~~~~~~Di-~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 272 (335)
T 2owb_A 196 E--RKKVLCGTPNYIAPEVLSKKGHSFEVDV-WSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPKHINPVAASLI 272 (335)
T ss_dssp C--CBCCCCSCCSSCCHHHHHTSCBCTHHHH-HHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHH
T ss_pred c--cccccCCCccccCHHHhccCCCCchhhH-HHHHHHHHHHHHCcCCCCCCCHHHHHHHHhcCCCCCCccCCHHHHHHH
Confidence 2 2234569999999999999999999999 999999999999887655432111 1123457789999
Q ss_pred HHccCCCCCCCCCHHHHHHH
Q 001988 950 LECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 950 ~~cl~~~P~~RPt~~ev~~~ 969 (985)
.+||..||++||++.|+++.
T Consensus 273 ~~~l~~dp~~Rps~~ell~~ 292 (335)
T 2owb_A 273 QKMLQTDPTARPTINELLND 292 (335)
T ss_dssp HHHTCSSGGGSCCGGGGGGS
T ss_pred HHHccCChhHCcCHHHHhcC
Confidence 99999999999999999863
No 225
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=3.4e-34 Score=315.33 Aligned_cols=235 Identities=23% Similarity=0.289 Sum_probs=199.5
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEec
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLEY 803 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e~ 803 (985)
.++|...+.||+|+||.||+|+.. +++.||+|+++.........+.+|++++++++||||+++++++.+.+..++||||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 87 (304)
T 2jam_A 8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQL 87 (304)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEc
Confidence 467899999999999999999975 7999999999866444556789999999999999999999999999999999999
Q ss_pred cCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEE---cCCCcEEEecccCceeccCCC
Q 001988 804 MSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLL---DEDMVAHLSDFGMAKLLSGED 880 (985)
Q Consensus 804 ~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill---~~~~~~kl~DfGla~~~~~~~ 880 (985)
+++++|.+++...+ .+++.....++.|++.||+|| |+.||+||||||+||++ +.++.+||+|||+++.....
T Consensus 88 ~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~l---H~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~- 162 (304)
T 2jam_A 88 VSGGELFDRILERG-VYTEKDASLVIQQVLSAVKYL---HENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNG- 162 (304)
T ss_dssp CCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHH---HHTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCB-
T ss_pred CCCccHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH---HHCCccccCCCHHHEEEecCCCCCCEEEccCCcceecCCC-
Confidence 99999999987654 688999999999999999999 78899999999999999 78899999999998764321
Q ss_pred CcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh---------------hHHHHHHHH
Q 001988 881 ESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA---------------AKEQCLLSI 945 (985)
Q Consensus 881 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~---------------~~~~~~~~l 945 (985)
......||+.|+|||.+.+..++.++|+ |++|+++++++++..+........ ....+++++
T Consensus 163 ---~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 238 (304)
T 2jam_A 163 ---IMSTACGTPGYVAPEVLAQKPYSKAVDC-WSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEFESPFWDDISESA 238 (304)
T ss_dssp ---TTHHHHSCCCBCCTTTBSSCSCCHHHHH-HHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHCCCCCCTTTTTTSCHHH
T ss_pred ---ccccccCCCCccChHHhccCCCCchhhH-HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCccccccCCHHH
Confidence 2233469999999999999999999999 999999999999887654322111 112356789
Q ss_pred HHHHHHccCCCCCCCCCHHHHHH
Q 001988 946 FSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 946 ~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
.+++.+|+..||.+||++.|+++
T Consensus 239 ~~li~~~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 239 KDFICHLLEKDPNERYTCEKALS 261 (304)
T ss_dssp HHHHHHHHCSSTTTSCCHHHHHT
T ss_pred HHHHHHHcCCChhHCcCHHHHhc
Confidence 99999999999999999999986
No 226
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.7e-34 Score=317.71 Aligned_cols=237 Identities=25% Similarity=0.322 Sum_probs=199.6
Q ss_pred HhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEe
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLE 802 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e 802 (985)
..++|...+.||+|+||.||+|... +|+.||+|.+.... ....+.+|++++++++||||+++++++...+..++|||
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 104 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVME 104 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEee
Confidence 4567999999999999999999876 68999999997653 34678999999999999999999999999999999999
Q ss_pred ccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCCc
Q 001988 803 YMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDES 882 (985)
Q Consensus 803 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~~ 882 (985)
|+++++|.+++......+++..+..++.|++.||+|| |+.||+||||||+||+++.++.+||+|||++..+....
T Consensus 105 ~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~l---H~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~-- 179 (314)
T 3com_A 105 YCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYL---HFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTM-- 179 (314)
T ss_dssp CCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTTB--
T ss_pred cCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH---HhCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhhc--
Confidence 9999999999986666789999999999999999999 78999999999999999999999999999998764322
Q ss_pred ceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh--------------hhHHHHHHHHHHH
Q 001988 883 TMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF--------------AAKEQCLLSIFSL 948 (985)
Q Consensus 883 ~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~--------------~~~~~~~~~l~~l 948 (985)
.......||+.|+|||.+.+..++.++|+ |++|+++++++++..+....... ..+..++..+.++
T Consensus 180 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 258 (314)
T 3com_A 180 AKRNTVIGTPFWMAPEVIQEIGYNCVADI-WSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDNFTDF 258 (314)
T ss_dssp SCBCCCCSCGGGCCHHHHSSSCBCTTHHH-HHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSGGGSCHHHHHH
T ss_pred cccCccCCCCCccChhhcCCCCCCccccH-HHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCcccCCcccCCHHHHHH
Confidence 12234569999999999999999999999 99999999999988765432211 1123356789999
Q ss_pred HHHccCCCCCCCCCHHHHHH
Q 001988 949 ALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 949 ~~~cl~~~P~~RPt~~ev~~ 968 (985)
+.+||..||.+||++.++++
T Consensus 259 i~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 259 VKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp HHHHTCSCTTTSCCHHHHTT
T ss_pred HHHHccCChhhCcCHHHHHh
Confidence 99999999999999999986
No 227
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=3.9e-34 Score=311.55 Aligned_cols=235 Identities=23% Similarity=0.277 Sum_probs=201.9
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC---cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC---ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~---~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv 800 (985)
.++|...+.||+|+||.||+|+.. +++.||+|++.... ......+.+|++++++++||||+++++++.+.+..++|
T Consensus 13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 92 (284)
T 2vgo_A 13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLM 92 (284)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEE
Confidence 367899999999999999999876 68889999986532 12246789999999999999999999999999999999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCC
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGED 880 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~ 880 (985)
|||+++|+|.+++...+ .+++..+..++.|+++||+|| |++||+||||||+||+++.++.+||+|||++.......
T Consensus 93 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~l---H~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~ 168 (284)
T 2vgo_A 93 LEFAPRGELYKELQKHG-RFDEQRSATFMEELADALHYC---HERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLR 168 (284)
T ss_dssp ECCCTTEEHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHH---HTTTEECCCCSGGGEEECTTCCEEECCCTTCEECSSSC
T ss_pred EEeCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HHCCceecCCCHHHEEEcCCCCEEEecccccccCcccc
Confidence 99999999999998754 689999999999999999999 78999999999999999999999999999997754221
Q ss_pred CcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhhh-----------HHHHHHHHHHHH
Q 001988 881 ESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA-----------KEQCLLSIFSLA 949 (985)
Q Consensus 881 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~l~~l~ 949 (985)
.....|++.|+|||.+.+..++.++|+ |++|+++++++++..+......... +...+.++.+++
T Consensus 169 ----~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 243 (284)
T 2vgo_A 169 ----RRTMCGTLDYLPPEMIEGKTHDEKVDL-WCAGVLCYEFLVGMPPFDSPSHTETHRRIVNVDLKFPPFLSDGSKDLI 243 (284)
T ss_dssp ----BCCCCSCGGGCCHHHHTTCCBCTTHHH-HHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCTTSCHHHHHHH
T ss_pred ----cccccCCCCcCCHHHhccCCCCcccch-hhHHHHHHHHHHCCCCCCCCCHhHHHHHHhccccCCCCcCCHHHHHHH
Confidence 234569999999999999999999999 9999999999998876544322111 123457789999
Q ss_pred HHccCCCCCCCCCHHHHHH
Q 001988 950 LECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 950 ~~cl~~~P~~RPt~~ev~~ 968 (985)
.+|+..||.+||++.|+++
T Consensus 244 ~~~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 244 SKLLRYHPPQRLPLKGVME 262 (284)
T ss_dssp HHHSCSSGGGSCCHHHHHT
T ss_pred HHHhhcCHhhCCCHHHHhh
Confidence 9999999999999999986
No 228
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=1.9e-34 Score=321.39 Aligned_cols=238 Identities=25% Similarity=0.367 Sum_probs=195.0
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcc--hHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCAS--TLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVL 801 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~--~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~ 801 (985)
.++|+..+.||+|+||.||+|+.. +++.||||++...... ..+.+.+|++++++++||||+++++++.+.+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 103 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVF 103 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEE
Confidence 367889999999999999999975 6899999998655333 2456789999999999999999999999999999999
Q ss_pred eccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCC
Q 001988 802 EYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDE 881 (985)
Q Consensus 802 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 881 (985)
||+++++|.++..... .+++..+..++.|++.||+|| |+.||+||||||+||+++.++.+||+|||+++.+.....
T Consensus 104 e~~~~~~l~~~~~~~~-~~~~~~~~~~~~qi~~~l~~L---H~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 179 (331)
T 4aaa_A 104 EFVDHTILDDLELFPN-GLDYQVVQKYLFQIINGIGFC---HSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGE 179 (331)
T ss_dssp ECCSEEHHHHHHHSTT-CCCHHHHHHHHHHHHHHHHHH---HHTTCCCCCCCGGGEEECTTSCEEECCCTTC--------
T ss_pred ecCCcchHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHH---HHCCEEccCcChheEEEcCCCcEEEEeCCCceeecCCcc
Confidence 9999988888766543 689999999999999999999 788999999999999999999999999999987643222
Q ss_pred cceecccccccccccccccccC-ccchhhhcccccccchhhhcccccccCcchhhhh-----------------------
Q 001988 882 STMRTQTLATIGYMAPDEIFVG-ELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA----------------------- 937 (985)
Q Consensus 882 ~~~~~~~~gt~~y~aPE~~~~~-~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~----------------------- 937 (985)
......||+.|+|||.+.+. .++.++|+ |++|+++++++++..+.........
T Consensus 180 --~~~~~~~t~~y~aPE~~~~~~~~~~~~Di-~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (331)
T 4aaa_A 180 --VYDDEVATRWYRAPELLVGDVKYGKAVDV-WAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNP 256 (331)
T ss_dssp ------CCCCCTTCCHHHHTTCTTCCTHHHH-HHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCG
T ss_pred --ccCCCcCCccccCcccccCCCCcchHHHH-HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhcc
Confidence 22345699999999998775 68899999 9999999999999876543321110
Q ss_pred -------------------HHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 001988 938 -------------------KEQCLLSIFSLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 938 -------------------~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
...+++++.+++.+||..||.+||++.|+++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h 307 (331)
T 4aaa_A 257 VFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHH 307 (331)
T ss_dssp GGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred ccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence 01245779999999999999999999998863
No 229
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=7.7e-34 Score=311.02 Aligned_cols=237 Identities=27% Similarity=0.353 Sum_probs=196.5
Q ss_pred cCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEecc
Q 001988 726 DNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLEYM 804 (985)
Q Consensus 726 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e~~ 804 (985)
++|.....||+|+||.||+|... +++.||||.+........+.+.+|+.++++++||||+++++++.+.+..++||||+
T Consensus 22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 101 (295)
T 2clq_A 22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQV 101 (295)
T ss_dssp CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeC
Confidence 34555669999999999999964 78899999998765556678999999999999999999999999999999999999
Q ss_pred CCCChHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcC-CCcEEEecccCceeccCCCC
Q 001988 805 SNGSLEDCLHSSN--CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDE-DMVAHLSDFGMAKLLSGEDE 881 (985)
Q Consensus 805 ~~gsL~~~l~~~~--~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~-~~~~kl~DfGla~~~~~~~~ 881 (985)
++++|.+++.... ..+++..+..++.|++.||+|| |++||+||||||+||+++. ++.+||+|||+++......
T Consensus 102 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~l---H~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~- 177 (295)
T 2clq_A 102 PGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYL---HDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGIN- 177 (295)
T ss_dssp SEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHH---HHTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC---
T ss_pred CCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHH---HhCCEEccCCChhhEEEECCCCCEEEeecccccccCCCC-
Confidence 9999999998653 3457888999999999999999 7889999999999999987 8999999999998764322
Q ss_pred cceecccccccccccccccccCc--cchhhhcccccccchhhhcccccccCcchhh--------------hhHHHHHHHH
Q 001988 882 STMRTQTLATIGYMAPDEIFVGE--LSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF--------------AAKEQCLLSI 945 (985)
Q Consensus 882 ~~~~~~~~gt~~y~aPE~~~~~~--~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~--------------~~~~~~~~~l 945 (985)
.......||+.|+|||.+..+. ++.++|+ |++|+++++++++..+....... ..+..++.++
T Consensus 178 -~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di-~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (295)
T 2clq_A 178 -PCTETFTGTLQYMAPEIIDKGPRGYGKAADI-WSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFKVHPEIPESMSAEA 255 (295)
T ss_dssp ----CCCCCCGGGCCHHHHHHGGGGCSHHHHH-HHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHHCCCCCCCTTSCHHH
T ss_pred -CcccccCCCccccChhhhcCCCCCCCcHHHH-HHHHHHHHHHHHCCCCccCCCchhHHHHhhccccccccccccCCHHH
Confidence 2223456999999999987654 7889999 99999999999988765432111 1122356789
Q ss_pred HHHHHHccCCCCCCCCCHHHHHH
Q 001988 946 FSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 946 ~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
.+++.+||..||++||++.|+++
T Consensus 256 ~~li~~~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 256 KAFILKCFEPDPDKRACANDLLV 278 (295)
T ss_dssp HHHHHHTTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHccCChhhCCCHHHHhc
Confidence 99999999999999999999975
No 230
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=2.2e-34 Score=330.89 Aligned_cols=236 Identities=23% Similarity=0.299 Sum_probs=189.6
Q ss_pred HhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc--------chHHHHHHHHHHHHhcCCCCeeeEEeeeecC
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA--------STLKSFEAECEVIKNIRHRNLVKIISSCSND 794 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~--------~~~~~~~~E~~il~~l~h~niv~l~~~~~~~ 794 (985)
..++|...+.||+|+||.||+|... +++.||||++..... .....+.+|++++++++||||+++++++...
T Consensus 133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~ 212 (419)
T 3i6u_A 133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE 212 (419)
T ss_dssp HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEESS
T ss_pred hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEecC
Confidence 4678999999999999999999865 789999999875421 1123578999999999999999999998654
Q ss_pred CceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCC---cEEEeccc
Q 001988 795 DFKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDM---VAHLSDFG 871 (985)
Q Consensus 795 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~---~~kl~DfG 871 (985)
..++||||+++|+|.+++.... .+++..+..++.|++.||+|| |++||+||||||+||+++.++ .+||+|||
T Consensus 213 -~~~lv~e~~~~g~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~L---H~~~ivHrDlkp~NIll~~~~~~~~~kl~DFG 287 (419)
T 3i6u_A 213 -DYYIVLELMEGGELFDKVVGNK-RLKEATCKLYFYQMLLAVQYL---HENGIIHRDLKPENVLLSSQEEDCLIKITDFG 287 (419)
T ss_dssp -EEEEEEECCTTCBGGGGTSSSC-CCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCCGGGEEESSSSSSCCEEECCSS
T ss_pred -ceEEEEEcCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHH---HHCCccccCCChHhEEEecCCCcceEEEeecc
Confidence 5789999999999999987654 689999999999999999999 788999999999999997544 59999999
Q ss_pred CceeccCCCCcceecccccccccccccccc---cCccchhhhcccccccchhhhcccccccCcchhh-------------
Q 001988 872 MAKLLSGEDESTMRTQTLATIGYMAPDEIF---VGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF------------- 935 (985)
Q Consensus 872 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~------------- 935 (985)
+|+.+... ......+||+.|+|||.+. ...++.++|+ |++|+++++++++..++......
T Consensus 288 ~a~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di-wslG~il~~lltg~~pf~~~~~~~~~~~~i~~~~~~ 363 (419)
T 3i6u_A 288 HSKILGET---SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDC-WSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYN 363 (419)
T ss_dssp TTTSCC--------------CTTCCTTTTC----CTTHHHHHH-HHHHHHHHHHHHSSCSSCCCSSSCCHHHHHHTTCCC
T ss_pred cceecCCC---ccccccCCCCCccCceeeecCCCCCCCchhhh-HhHHHHHHHHHHCCCCCCCCcchHHHHHHHhcCCCC
Confidence 99876422 2234467999999999985 3678889999 99999999999988766432111
Q ss_pred ---hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 936 ---AAKEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 936 ---~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
.....+++++.+++.+|+..||.+||++.|+++
T Consensus 364 ~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 399 (419)
T 3i6u_A 364 FIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 399 (419)
T ss_dssp CCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence 111235678999999999999999999999986
No 231
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=5.6e-34 Score=313.45 Aligned_cols=238 Identities=25% Similarity=0.328 Sum_probs=204.3
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC-cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEe
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC-ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLE 802 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~-~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e 802 (985)
.+.|...+.||+|+||.||+|... +++.||+|++.... ....+.+.+|+.++++++||||+++++++.+.+..++|||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 100 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME 100 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEE
Confidence 456888999999999999999864 78999999997653 3346788999999999999999999999999999999999
Q ss_pred ccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCCc
Q 001988 803 YMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDES 882 (985)
Q Consensus 803 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~~ 882 (985)
|+++++|.+++... .+++..+..++.|++.||+|| |+.||+||||||+||+++.++.+||+|||++..+....
T Consensus 101 ~~~~~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~l---H~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~-- 173 (303)
T 3a7i_A 101 YLGGGSALDLLEPG--PLDETQIATILREILKGLDYL---HSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQ-- 173 (303)
T ss_dssp CCTTEEHHHHHTTS--CCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTB--
T ss_pred eCCCCcHHHHHhcC--CCCHHHHHHHHHHHHHHHHHH---HHCCCccCCCChheEEECCCCCEEEeecccceecCccc--
Confidence 99999999998753 689999999999999999999 78899999999999999999999999999998865322
Q ss_pred ceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh------------hHHHHHHHHHHHHH
Q 001988 883 TMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA------------AKEQCLLSIFSLAL 950 (985)
Q Consensus 883 ~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~------------~~~~~~~~l~~l~~ 950 (985)
.......||+.|+|||.+.+..++.++|+ |++|+++++++++..+........ ....++.++.+++.
T Consensus 174 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~ 252 (303)
T 3a7i_A 174 IKRNTFVGTPFWMAPEVIKQSAYDSKADI-WSLGITAIELARGEPPHSELHPMKVLFLIPKNNPPTLEGNYSKPLKEFVE 252 (303)
T ss_dssp CCBCCCCSCGGGCCHHHHTTCCBCTHHHH-HHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCCSSCCHHHHHHHH
T ss_pred cccCccCCCcCccCHHHHhcCCCCchhhh-HHHHHHHHHHccCCCCCCCcCHHHHHHHhhcCCCCCCccccCHHHHHHHH
Confidence 12234569999999999999999999999 999999999999887654332111 11134567999999
Q ss_pred HccCCCCCCCCCHHHHHHHH
Q 001988 951 ECTMESPEKRIDAKDTITRL 970 (985)
Q Consensus 951 ~cl~~~P~~RPt~~ev~~~L 970 (985)
+||..+|.+||++.|+++..
T Consensus 253 ~~l~~dp~~Rps~~~ll~~~ 272 (303)
T 3a7i_A 253 ACLNKEPSFRPTAKELLKHK 272 (303)
T ss_dssp HHCCSSGGGSCCHHHHTTCH
T ss_pred HHcCCChhhCcCHHHHhhCh
Confidence 99999999999999998753
No 232
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=1.7e-34 Score=325.78 Aligned_cols=236 Identities=22% Similarity=0.336 Sum_probs=199.5
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc-chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEe
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA-STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLE 802 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e 802 (985)
.++|...+.||+|+||.||+|... +++.||+|++..... ...+.+.+|++++++++||||+++++++.+++..++|||
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 111 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME 111 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEE
Confidence 367889999999999999999976 789999999986532 335678999999999999999999999999999999999
Q ss_pred ccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCC-CeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCC
Q 001988 803 YMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHST-PIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDE 881 (985)
Q Consensus 803 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~-~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 881 (985)
|+++|+|.+++...+ .+++..+..++.|++.||+|| |+. ||+||||||+||+++.++.+||+|||+++.+...
T Consensus 112 ~~~~~~L~~~l~~~~-~~~~~~~~~i~~~i~~~l~~l---h~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-- 185 (360)
T 3eqc_A 112 HMDGGSLDQVLKKAG-RIPEQILGKVSIAVIKGLTYL---REKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS-- 185 (360)
T ss_dssp CCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHH---HHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH--
T ss_pred CCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH---HHhCCEEcCCccHHHEEECCCCCEEEEECCCCcccccc--
Confidence 999999999998754 688999999999999999999 554 8999999999999999999999999999765321
Q ss_pred cceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhhh------------------------
Q 001988 882 STMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA------------------------ 937 (985)
Q Consensus 882 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~------------------------ 937 (985)
......||+.|+|||.+.+..++.++|+ |++|+++++++++..+.........
T Consensus 186 --~~~~~~gt~~y~aPE~~~~~~~~~~~Di-~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (360)
T 3eqc_A 186 --MANSFVGTRSYMSPERLQGTHYSVQSDI-WSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGR 262 (360)
T ss_dssp --C----CCCCTTCCHHHHTTCCCSHHHHH-HHHHHHHHHHHHTSCCSSCCCHHHHHHHHC-------------------
T ss_pred --cccCCCCCCCeECHHHHcCCCCCchhhH-HHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCC
Confidence 2234569999999999999999999999 9999999999998866543211000
Q ss_pred -------------------------------HHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 001988 938 -------------------------------KEQCLLSIFSLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 938 -------------------------------~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
...++.++.+++.+||..||.+|||+.|+++.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 325 (360)
T 3eqc_A 263 PLNKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVH 325 (360)
T ss_dssp -----------CCCHHHHHHHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred cccccccCCCCcccchhhhhHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhhC
Confidence 01135678999999999999999999999863
No 233
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=3.1e-34 Score=336.02 Aligned_cols=233 Identities=24% Similarity=0.298 Sum_probs=199.1
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc---chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA---STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~---~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv 800 (985)
.++|...+.||+|+||.||+|+.+ +|+.||+|++.+... .....+.+|++++++++||||+++++++.+.+..|+|
T Consensus 184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 263 (543)
T 3c4z_A 184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV 263 (543)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence 367888999999999999999975 799999999975421 2346788999999999999999999999999999999
Q ss_pred EeccCCCChHHHhhcC---CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceecc
Q 001988 801 LEYMSNGSLEDCLHSS---NCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLS 877 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~---~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~ 877 (985)
|||++||+|.+++... ...+++.....++.||+.||+|| |++||+||||||+||+++.+|.+||+|||+++.+.
T Consensus 264 mE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~L---H~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~ 340 (543)
T 3c4z_A 264 MTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHL---HQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELK 340 (543)
T ss_dssp ECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred EEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHH---HHcCCcccCCChHHEEEeCCCCEEEeecceeeecc
Confidence 9999999999998764 34689999999999999999999 78999999999999999999999999999998865
Q ss_pred CCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh---------------hhHHHHH
Q 001988 878 GEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF---------------AAKEQCL 942 (985)
Q Consensus 878 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~---------------~~~~~~~ 942 (985)
.... .....+||+.|+|||++.+..++.++|+ |++|++++++++|..++...... ..+...+
T Consensus 341 ~~~~--~~~~~~GT~~Y~APE~l~~~~~~~~~Di-wSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~~~~~p~~~s 417 (543)
T 3c4z_A 341 AGQT--KTKGYAGTPGFMAPELLLGEEYDFSVDY-FALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAVTYPDKFS 417 (543)
T ss_dssp TTCC--CBCCCCSCTTTSCHHHHTTCCBCTHHHH-HHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHCCCCCCTTSC
T ss_pred CCCc--ccccccCCccccChhhhcCCCCChHHhc-CcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhcccCCCcccC
Confidence 3322 2334579999999999999999999999 99999999999998766442110 0112356
Q ss_pred HHHHHHHHHccCCCCCCCCCH
Q 001988 943 LSIFSLALECTMESPEKRIDA 963 (985)
Q Consensus 943 ~~l~~l~~~cl~~~P~~RPt~ 963 (985)
.++.+++.+|+..||.+||++
T Consensus 418 ~~~~~li~~lL~~dP~~R~~~ 438 (543)
T 3c4z_A 418 PASKDFCEALLQKDPEKRLGF 438 (543)
T ss_dssp HHHHHHHHHHSCSSGGGSCCC
T ss_pred HHHHHHHHHhccCCHhHCCCC
Confidence 788999999999999999975
No 234
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=2.8e-35 Score=334.13 Aligned_cols=242 Identities=14% Similarity=0.153 Sum_probs=193.7
Q ss_pred hcCccCCceeeccCceeEEEEEE-cCCcEEEEEEeccC---CcchHHHHHHHHH---HHHhcCCCCeeeEE-------ee
Q 001988 725 TDNFAENNIIGIGGFGSVYRARL-EDGVEIAIKVFHPQ---CASTLKSFEAECE---VIKNIRHRNLVKII-------SS 790 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vAvK~~~~~---~~~~~~~~~~E~~---il~~l~h~niv~l~-------~~ 790 (985)
.++|...+.||+|+||.||+|+. .+|+.||||++... .....+.+.+|++ ++++++|||||+++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 46788899999999999999996 57999999999743 2334678899995 45555899999998 56
Q ss_pred eecCC-----------------ceEEEEeccCCCChHHHhhcCCC------CCCHHHHHHHHHHHHHHHHHHHhcCCCCe
Q 001988 791 CSNDD-----------------FKALVLEYMSNGSLEDCLHSSNC------ALNIFCRLNIMIDIASALEYLHFGHSTPI 847 (985)
Q Consensus 791 ~~~~~-----------------~~~lv~e~~~~gsL~~~l~~~~~------~~~~~~~~~i~~~i~~~L~~Lh~~h~~~i 847 (985)
+.+++ ..++||||+ +|+|.+++...+. .+++..+..++.||+.||+|| |++||
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~L---H~~~i 227 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASL---HHYGL 227 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHH---HHTTE
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHH---HhCCe
Confidence 55543 278999999 6899999986421 223588889999999999999 78899
Q ss_pred EeCCCCCCCEEEcCCCcEEEecccCceeccCCCCcceecccccccccccccccccC-----------ccchhhhcccccc
Q 001988 848 IHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVG-----------ELSLKRWVNDLLP 916 (985)
Q Consensus 848 vHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~dv~~~~g 916 (985)
+||||||+|||++.++.+||+|||+|+.... .....+| +.|+|||.+.+. .++.++|+ |++|
T Consensus 228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~-----~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Dv-wSlG 300 (377)
T 3byv_A 228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA-----RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDA-WALG 300 (377)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTC-----EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHH-HHHH
T ss_pred ecCCCCHHHEEEcCCCCEEEEechhheecCC-----cccCCCC-cCccChhhhcccccccccccccccCChhhhH-HHHH
Confidence 9999999999999999999999999986421 2334567 999999999887 89999999 9999
Q ss_pred cchhhhcccccccCcchhh-------hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHhHhhh
Q 001988 917 VSLVEVVDKSLLSGEEKHF-------AAKEQCLLSIFSLALECTMESPEKRIDAKDTIT--RLLKIRDTL 977 (985)
Q Consensus 917 ~~~~~i~~~~~~~~~~~~~-------~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~--~L~~i~~~~ 977 (985)
++++++++++.++...... .....+++++.+++.+||..||++||++.|+++ .+.++++..
T Consensus 301 ~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~~~~~ 370 (377)
T 3byv_A 301 LVIYWIWCADLPITKDAALGGSEWIFRSCKNIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQLRTEL 370 (377)
T ss_dssp HHHHHHHHSSCCC------CCSGGGGSSCCCCCHHHHHHHHHHTCSSGGGCCCHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCcccccccchhhhhhhccCCCHHHHHHHHHHcCCCchhCCCHHHHhhChHHHHHHHHH
Confidence 9999999988765432211 111345678999999999999999999999986 555555543
No 235
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=3.9e-34 Score=318.12 Aligned_cols=244 Identities=18% Similarity=0.206 Sum_probs=201.7
Q ss_pred HHHHHHhcCccCC-ceeeccCceeEEEEEEc-CCcEEEEEEeccCC--cchHHHHHHHHHHHHhcC-CCCeeeEEeeeec
Q 001988 719 FELLRATDNFAEN-NIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC--ASTLKSFEAECEVIKNIR-HRNLVKIISSCSN 793 (985)
Q Consensus 719 ~~~~~~~~~~~~~-~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~--~~~~~~~~~E~~il~~l~-h~niv~l~~~~~~ 793 (985)
.......++|... +.||+|+||.||+|+.. +++.||+|++.... ......+.+|+.++++++ ||||+++++++.+
T Consensus 21 ~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~ 100 (327)
T 3lm5_A 21 QSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYEN 100 (327)
T ss_dssp BCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEEC
T ss_pred HHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEe
Confidence 3344556677777 88999999999999876 78999999987542 233578899999999995 6999999999999
Q ss_pred CCceEEEEeccCCCChHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcC---CCcEEEec
Q 001988 794 DDFKALVLEYMSNGSLEDCLHSS-NCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDE---DMVAHLSD 869 (985)
Q Consensus 794 ~~~~~lv~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~---~~~~kl~D 869 (985)
.+..++||||+++|+|.+++... ...+++..+..++.|++.||+|| |++||+||||||+||+++. ++.+||+|
T Consensus 101 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~L---H~~givH~Dikp~NIl~~~~~~~~~~kL~D 177 (327)
T 3lm5_A 101 TSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYL---HQNNIVHLDLKPQNILLSSIYPLGDIKIVD 177 (327)
T ss_dssp SSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCCGGGEEESCBTTBCCEEECC
T ss_pred CCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH---HHCCeecCcCChHHEEEecCCCCCcEEEee
Confidence 99999999999999999998654 45689999999999999999999 7889999999999999988 78999999
Q ss_pred ccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh-------------
Q 001988 870 FGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA------------- 936 (985)
Q Consensus 870 fGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~------------- 936 (985)
||+++...... ......||+.|+|||.+....++.++|+ |++|+++++++++..++.......
T Consensus 178 fg~a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Di-wslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~ 253 (327)
T 3lm5_A 178 FGMSRKIGHAC---ELREIMGTPEYLAPEILNYDPITTATDM-WNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYS 253 (327)
T ss_dssp GGGCEEC------------CCCGGGCCHHHHTTCCCCTHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCC
T ss_pred CccccccCCcc---ccccccCCcCccCCeeecCCCCCchhhH-HHHHHHHHHHHhCCCCCCCCCchHHHHHHHhcccccC
Confidence 99998864322 2234579999999999999999999999 999999999999887654332111
Q ss_pred --hHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 001988 937 --AKEQCLLSIFSLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 937 --~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
....+++.+.+++.+|+..||.+||++.|+++.
T Consensus 254 ~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h 288 (327)
T 3lm5_A 254 EETFSSVSQLATDFIQSLLVKNPEKRPTAEICLSH 288 (327)
T ss_dssp TTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTC
T ss_pred chhhcccCHHHHHHHHHHcCCChhhCcCHHHHhCC
Confidence 112356779999999999999999999999763
No 236
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=7.3e-34 Score=333.63 Aligned_cols=237 Identities=21% Similarity=0.280 Sum_probs=200.5
Q ss_pred HhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC--cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEE
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC--ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~--~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv 800 (985)
..++|...+.||+|+||.||+|+.. +++.||||++.... ......+.+|++++++++||||+++++++.+.+..++|
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 99 (486)
T 3mwu_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV 99 (486)
T ss_dssp HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEE
Confidence 3467999999999999999999975 78999999986432 23457789999999999999999999999999999999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEc---CCCcEEEecccCceecc
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLD---EDMVAHLSDFGMAKLLS 877 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~---~~~~~kl~DfGla~~~~ 877 (985)
|||+++|+|.+++.... .+++..+..++.|++.||+|| |++||+||||||+||+++ .++.+||+|||+++.+.
T Consensus 100 ~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~al~~l---H~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~ 175 (486)
T 3mwu_A 100 GELYTGGELFDEIIKRK-RFSEHDAARIIKQVFSGITYM---HKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQ 175 (486)
T ss_dssp ECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBC
T ss_pred EEcCCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HHCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECC
Confidence 99999999999987654 689999999999999999999 789999999999999995 56689999999998764
Q ss_pred CCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh---------------hhHHHHH
Q 001988 878 GEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF---------------AAKEQCL 942 (985)
Q Consensus 878 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~---------------~~~~~~~ 942 (985)
... .....+||+.|+|||.+.+ .++.++|+ |++|+++++++++..++...... +....++
T Consensus 176 ~~~---~~~~~~gt~~y~aPE~~~~-~~~~~~Di-wslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s 250 (486)
T 3mwu_A 176 QNT---KMKDRIGTAYYIAPEVLRG-TYDEKCDV-WSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTIS 250 (486)
T ss_dssp CC-------CCTTGGGGCCGGGGGS-CCCHHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCSGGGGGSC
T ss_pred CCC---ccCCCcCCCCCCCHHHhCC-CCCchhhH-HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCcccCCCC
Confidence 322 2334579999999998764 68999999 99999999999998776443211 1223456
Q ss_pred HHHHHHHHHccCCCCCCCCCHHHHHHH
Q 001988 943 LSIFSLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 943 ~~l~~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
+++.+++.+||..+|.+|||+.|+++.
T Consensus 251 ~~~~~li~~~L~~dp~~R~t~~~~l~h 277 (486)
T 3mwu_A 251 DDAKDLIRKMLTFHPSLRITATQCLEH 277 (486)
T ss_dssp HHHHHHHHHHTCSSTTTSCCHHHHHHC
T ss_pred HHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 789999999999999999999999874
No 237
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=6.3e-34 Score=308.52 Aligned_cols=237 Identities=25% Similarity=0.348 Sum_probs=194.0
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC---cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC---ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~---~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv 800 (985)
.++|...+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|++++++++||||+++++++.+.+..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV 89 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence 467899999999999999999976 79999999986542 12345788999999999999999999999999999999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCC
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGED 880 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~ 880 (985)
|||+++++|.+++.... .+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||++.......
T Consensus 90 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~l---H~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~ 165 (276)
T 2h6d_A 90 MEYVSGGELFDYICKHG-RVEEMEARRLFQQILSAVDYC---HRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGE 165 (276)
T ss_dssp EECCCSCBHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHH---HHHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC--
T ss_pred EeccCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHH---HHCCCccCCCChhhEEECCCCCEEEeecccccccCCCc
Confidence 99999999999997654 588999999999999999999 78899999999999999999999999999998764322
Q ss_pred CcceecccccccccccccccccCcc-chhhhcccccccchhhhcccccccCcchhhh-----------hHHHHHHHHHHH
Q 001988 881 ESTMRTQTLATIGYMAPDEIFVGEL-SLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA-----------AKEQCLLSIFSL 948 (985)
Q Consensus 881 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~l~~l 948 (985)
......||+.|+|||.+.+..+ +.++|+ |++|+++++++++..+........ .+..++.++.++
T Consensus 166 ---~~~~~~~~~~y~aPE~~~~~~~~~~~~Di-~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 241 (276)
T 2h6d_A 166 ---FLRTSCGSPNYAAPEVISGRLYAGPEVDI-WSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPEYLNRSVATL 241 (276)
T ss_dssp --------------CCTGGGTTSCCCHHHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHH
T ss_pred ---ceecccCCccccCHHHHcCCCCCCccchH-HHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCcccCchhcCHHHHHH
Confidence 2234468999999999887765 688999 999999999999887654432111 112245779999
Q ss_pred HHHccCCCCCCCCCHHHHHHH
Q 001988 949 ALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 949 ~~~cl~~~P~~RPt~~ev~~~ 969 (985)
+.+|++.||.+||++.|+++.
T Consensus 242 i~~~l~~~p~~Rps~~~~l~h 262 (276)
T 2h6d_A 242 LMHMLQVDPLKRATIKDIREH 262 (276)
T ss_dssp HHHHTCSSGGGSCCHHHHHHS
T ss_pred HHHHccCChhhCCCHHHHHhC
Confidence 999999999999999999874
No 238
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=310.39 Aligned_cols=240 Identities=18% Similarity=0.275 Sum_probs=197.7
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC----cchHHHHHHHHHHHHhcCCCCeeeEEeeee--cCCce
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC----ASTLKSFEAECEVIKNIRHRNLVKIISSCS--NDDFK 797 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~----~~~~~~~~~E~~il~~l~h~niv~l~~~~~--~~~~~ 797 (985)
.++|...+.||+|+||.||+|... +++.||+|+++... ......+.+|++++++++||||+++++++. +.+..
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM 83 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence 478999999999999999999974 78999999997542 234577899999999999999999999984 45678
Q ss_pred EEEEeccCCCChHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceec
Q 001988 798 ALVLEYMSNGSLEDCLHSS-NCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLL 876 (985)
Q Consensus 798 ~lv~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~ 876 (985)
++||||++++ +.+++... ...+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||++...
T Consensus 84 ~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~L---H~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~ 159 (305)
T 2wtk_C 84 YMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYL---HSQGIVHKDIKPGNLLLTTGGTLKISALGVAEAL 159 (305)
T ss_dssp EEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred EEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHH---HHCCeeecCCCcccEEEcCCCcEEeecccccccc
Confidence 9999999876 77776653 45689999999999999999999 7889999999999999999999999999999887
Q ss_pred cCCCCcceecccccccccccccccccCc--cchhhhcccccccchhhhcccccccCcchhhhh-----------HHHHHH
Q 001988 877 SGEDESTMRTQTLATIGYMAPDEIFVGE--LSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA-----------KEQCLL 943 (985)
Q Consensus 877 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~ 943 (985)
.............||+.|+|||.+.+.. ++.++|+ |++|+++++++++..+......... +..+++
T Consensus 160 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di-~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~~~~~~~~~~ 238 (305)
T 2wtk_C 160 HPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDI-WSAGVTLYNITTGLYPFEGDNIYKLFENIGKGSYAIPGDCGP 238 (305)
T ss_dssp CTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHH-HHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCCSSSCH
T ss_pred CccccccccccCCCCCCCcChhhccCcccCCcchhhH-HHHHHHHHHHHhCCCCCCCchHHHHHHHHhcCCCCCCCccCH
Confidence 5433333344556999999999987643 4779999 9999999999998876654322111 123567
Q ss_pred HHHHHHHHccCCCCCCCCCHHHHHHH
Q 001988 944 SIFSLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 944 ~l~~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
++.+++.+|+..||.+||++.|+++.
T Consensus 239 ~l~~li~~~l~~dp~~Rps~~~ll~~ 264 (305)
T 2wtk_C 239 PLSDLLKGMLEYEPAKRFSIRQIRQH 264 (305)
T ss_dssp HHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred HHHHHHHHHccCChhhCCCHHHHhcC
Confidence 79999999999999999999999864
No 239
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=8.3e-34 Score=320.22 Aligned_cols=232 Identities=22% Similarity=0.305 Sum_probs=190.3
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc--chHHHHHHHHHHHHhcCCCCeeeEEeeeecCC------
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA--STLKSFEAECEVIKNIRHRNLVKIISSCSNDD------ 795 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~------ 795 (985)
.++|...+.||+|+||.||+|... +|+.||||++..... ...+.+.+|++++++++||||+++++++...+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 467899999999999999999974 799999999965432 23567889999999999999999999997653
Q ss_pred ceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCcee
Q 001988 796 FKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKL 875 (985)
Q Consensus 796 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~ 875 (985)
..++||||+ +++|.+++... .+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++.
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~~--~l~~~~~~~~~~qi~~~L~~L---H~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~ 177 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKHE--KLGEDRIQFLVYQMLKGLRYI---HAAGIIHRDLKPGNLAVNEDCELKILDFGLARQ 177 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred eEEEEEecC-CCCHHHHHhcC--CCCHHHHHHHHHHHHHHHHHH---HHCCccccCcCHHHEEEcCCCCEEEEeeecccc
Confidence 459999999 88999998863 588999999999999999999 789999999999999999999999999999987
Q ss_pred ccCCCCcceeccccccccccccccccc-CccchhhhcccccccchhhhcccccccCcchhhhhH----------------
Q 001988 876 LSGEDESTMRTQTLATIGYMAPDEIFV-GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAAK---------------- 938 (985)
Q Consensus 876 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~~---------------- 938 (985)
.... ....++|+.|+|||.+.+ ..++.++|+ |++|+++++++++..++.........
T Consensus 178 ~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~Di-wslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~ 251 (367)
T 1cm8_A 178 ADSE-----MTGYVVTRWYRAPEVILNWMRYTQTVDI-WSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQ 251 (367)
T ss_dssp CCSS-----CCSSCSCGGGCCTHHHHTTTCCCTTHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHH
T ss_pred cccc-----cCcCcCCCCcCCHHHHhCCCCCChhhhH-HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHH
Confidence 6422 234568999999999887 778999999 99999999999998765432211100
Q ss_pred --------------------------HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 939 --------------------------EQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 939 --------------------------~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
...++.+.+++.+|+..||.+|||+.|+++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~ 307 (367)
T 1cm8_A 252 RLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA 307 (367)
T ss_dssp TCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhc
Confidence 112567889999999999999999999987
No 240
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=2.5e-34 Score=312.19 Aligned_cols=244 Identities=20% Similarity=0.275 Sum_probs=201.0
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc--chHHHHHHHHHHHHhcCCCCeeeEEeeee--cCCceEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA--STLKSFEAECEVIKNIRHRNLVKIISSCS--NDDFKAL 799 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~h~niv~l~~~~~--~~~~~~l 799 (985)
.++|+..+.||+|+||.||+|+.. +++.||+|++..... ...+.+.+|++++++++||||+++++++. ..+..++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 84 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 84 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence 468899999999999999999975 789999999976532 34567899999999999999999999874 4567899
Q ss_pred EEeccCCCChHHHhhcC---CCCCCHHHHHHHHHHHHHHHHHHHhcCCCC-----eEeCCCCCCCEEEcCCCcEEEeccc
Q 001988 800 VLEYMSNGSLEDCLHSS---NCALNIFCRLNIMIDIASALEYLHFGHSTP-----IIHCDLKPSNVLLDEDMVAHLSDFG 871 (985)
Q Consensus 800 v~e~~~~gsL~~~l~~~---~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~-----ivHrDlk~~Nill~~~~~~kl~DfG 871 (985)
||||+++|+|.+++... ...+++..++.++.|++.||+|| |+.+ |+||||||+||+++.++.+||+|||
T Consensus 85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~l---H~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg 161 (279)
T 2w5a_A 85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKEC---HRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFG 161 (279)
T ss_dssp EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH---HHHC------CCCCCSGGGEEECSSSCEEECCCC
T ss_pred EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHH---hcccCCCCeeEEeccchhhEEEcCCCCEEEecCc
Confidence 99999999999998754 33589999999999999999999 5666 9999999999999999999999999
Q ss_pred CceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh------------hHH
Q 001988 872 MAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA------------AKE 939 (985)
Q Consensus 872 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~------------~~~ 939 (985)
+++...... .......||+.|+|||.+.+..++.++|+ |++|+++++++++..+........ .+.
T Consensus 162 ~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~~~~~~~ 238 (279)
T 2w5a_A 162 LARILNHDT--SFAKTFVGTPYYMSPEQMNRMSYNEKSDI-WSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPY 238 (279)
T ss_dssp HHHHC---C--HHHHHHHSCCTTCCHHHHHCC-CCHHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCCT
T ss_pred hheeecccc--ccccccCCCccccChHHhccCCCCchhhH-HHHHHHHHHHHHCCCCCcccCHHHHHHHHhhcccccCCc
Confidence 998764222 12233468999999999999999999999 999999999999887654432111 112
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhH
Q 001988 940 QCLLSIFSLALECTMESPEKRIDAKDTITRLLKIR 974 (985)
Q Consensus 940 ~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~ 974 (985)
.+++++.+++.+||..||.+||++.|+++......
T Consensus 239 ~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~~~~ 273 (279)
T 2w5a_A 239 RYSDELNEIITRMLNLKDYHRPSVEEILENPLILE 273 (279)
T ss_dssp TSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTCCG
T ss_pred ccCHHHHHHHHHHcCCCcccCCCHHHHHhChhhhh
Confidence 35678999999999999999999999998664433
No 241
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=1.3e-33 Score=333.02 Aligned_cols=237 Identities=22% Similarity=0.278 Sum_probs=199.1
Q ss_pred HhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc-------------chHHHHHHHHHHHHhcCCCCeeeEEe
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA-------------STLKSFEAECEVIKNIRHRNLVKIIS 789 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~-------------~~~~~~~~E~~il~~l~h~niv~l~~ 789 (985)
..++|...+.||+|+||.||+|+.. +++.||+|++..... ...+.+.+|++++++++||||+++++
T Consensus 34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~ 113 (504)
T 3q5i_A 34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD 113 (504)
T ss_dssp GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 3578999999999999999999975 688999999975421 23467889999999999999999999
Q ss_pred eeecCCceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCC---cEE
Q 001988 790 SCSNDDFKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDM---VAH 866 (985)
Q Consensus 790 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~---~~k 866 (985)
++.+.+..++||||+++|+|.+++.... .+++..+..++.|++.||+|| |++||+||||||+||+++.++ .+|
T Consensus 114 ~~~~~~~~~lv~e~~~gg~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~l---H~~~ivH~Dlkp~Nil~~~~~~~~~~k 189 (504)
T 3q5i_A 114 VFEDKKYFYLVTEFYEGGELFEQIINRH-KFDECDAANIMKQILSGICYL---HKHNIVHRDIKPENILLENKNSLLNIK 189 (504)
T ss_dssp EEECSSEEEEEEECCTTCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEESSTTCCSSEE
T ss_pred EEEcCCEEEEEEecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH---HHCCeEeCCCcHHHEEEecCCCCccEE
Confidence 9999999999999999999999987654 689999999999999999999 788999999999999998776 699
Q ss_pred EecccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh----------
Q 001988 867 LSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA---------- 936 (985)
Q Consensus 867 l~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~---------- 936 (985)
|+|||+++.+.... .....+||+.|+|||.+. +.++.++|+ |++|+++++++++..+........
T Consensus 190 l~Dfg~a~~~~~~~---~~~~~~gt~~y~aPE~~~-~~~~~~~Di-wslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~ 264 (504)
T 3q5i_A 190 IVDFGLSSFFSKDY---KLRDRLGTAYYIAPEVLK-KKYNEKCDV-WSCGVIMYILLCGYPPFGGQNDQDIIKKVEKGKY 264 (504)
T ss_dssp ECCCTTCEECCTTS---CBCCCCSCTTTCCHHHHT-TCBCTHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCC
T ss_pred EEECCCCEEcCCCC---ccccccCCcCCCCHHHhc-cCCCchHHH-HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCC
Confidence 99999998875322 233457999999999876 578999999 999999999999987765432111
Q ss_pred -----hHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 001988 937 -----AKEQCLLSIFSLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 937 -----~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
....+++++.+++.+|+.+||.+|||+.|+++.
T Consensus 265 ~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h 302 (504)
T 3q5i_A 265 YFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALNS 302 (504)
T ss_dssp CCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred CCCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 112356789999999999999999999999863
No 242
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=9.3e-34 Score=333.28 Aligned_cols=236 Identities=24% Similarity=0.319 Sum_probs=196.7
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC--cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC--ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVL 801 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~--~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~ 801 (985)
.++|+..+.||+|+||.||+|+.. +++.||+|++.... ......+.+|++++++++||||+++++++.+.+..++||
T Consensus 36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 115 (494)
T 3lij_A 36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVM 115 (494)
T ss_dssp HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 457899999999999999999976 78999999997653 234567899999999999999999999999999999999
Q ss_pred eccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcC---CCcEEEecccCceeccC
Q 001988 802 EYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDE---DMVAHLSDFGMAKLLSG 878 (985)
Q Consensus 802 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~---~~~~kl~DfGla~~~~~ 878 (985)
||+++|+|.+++.... .+++..+..++.|++.||+|| |++||+||||||+||+++. ++.+||+|||+++.+..
T Consensus 116 e~~~~g~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~l---H~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~ 191 (494)
T 3lij_A 116 ECYKGGELFDEIIHRM-KFNEVDAAVIIKQVLSGVTYL---HKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFEN 191 (494)
T ss_dssp ECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBT
T ss_pred ecCCCCcHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH---HHCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCC
Confidence 9999999999887653 689999999999999999999 7889999999999999976 45599999999988753
Q ss_pred CCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh---------------hHHHHHH
Q 001988 879 EDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA---------------AKEQCLL 943 (985)
Q Consensus 879 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~---------------~~~~~~~ 943 (985)
.. .....+||+.|+|||.+. +.++.++|+ |++|+++++++++..++....... ....+++
T Consensus 192 ~~---~~~~~~gt~~y~aPE~l~-~~~~~~~Di-wslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~ 266 (494)
T 3lij_A 192 QK---KMKERLGTAYYIAPEVLR-KKYDEKCDV-WSIGVILFILLAGYPPFGGQTDQEILRKVEKGKYTFDSPEWKNVSE 266 (494)
T ss_dssp TB---CBCCCCSCTTTCCHHHHT-TCBCTHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCSGGGTTSCH
T ss_pred Cc---cccccCCCcCeeCHHHHc-ccCCCchhH-HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCchhcccCCH
Confidence 22 234457999999999865 679999999 999999999999987765432111 1123567
Q ss_pred HHHHHHHHccCCCCCCCCCHHHHHHH
Q 001988 944 SIFSLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 944 ~l~~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
++.+++.+||..+|.+|||+.|+++.
T Consensus 267 ~~~~li~~~L~~dp~~R~s~~e~l~h 292 (494)
T 3lij_A 267 GAKDLIKQMLQFDSQRRISAQQALEH 292 (494)
T ss_dssp HHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred HHHHHHHHHCCCChhhCccHHHHhcC
Confidence 89999999999999999999999853
No 243
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=1.1e-33 Score=341.87 Aligned_cols=247 Identities=21% Similarity=0.323 Sum_probs=204.1
Q ss_pred HhcCccCCceeeccCceeEEEEEEc----CCcEEEEEEeccCCc-chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceE
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE----DGVEIAIKVFHPQCA-STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKA 798 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~----~~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~ 798 (985)
..++|...+.||+|+||.||+|.+. .+..||+|+++.... ...+.+.+|+.++++++||||+++++++.+ +..+
T Consensus 388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~-~~~~ 466 (656)
T 2j0j_A 388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE-NPVW 466 (656)
T ss_dssp CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCE
T ss_pred ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec-CceE
Confidence 3577899999999999999999864 356799999875433 234678999999999999999999999854 5689
Q ss_pred EEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccC
Q 001988 799 LVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSG 878 (985)
Q Consensus 799 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~ 878 (985)
+||||+++|+|.+++...+..+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++....
T Consensus 467 lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~L---H~~givHrDikp~NILl~~~~~vkL~DFG~a~~~~~ 543 (656)
T 2j0j_A 467 IIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYL---ESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 543 (656)
T ss_dssp EEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC
T ss_pred EEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHH---HhCCccccccchHhEEEeCCCCEEEEecCCCeecCC
Confidence 99999999999999987766789999999999999999999 788999999999999999999999999999987643
Q ss_pred CCCcceecccccccccccccccccCccchhhhcccccccchhhhcc-cccccCcchhh------------hhHHHHHHHH
Q 001988 879 EDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHF------------AAKEQCLLSI 945 (985)
Q Consensus 879 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~------------~~~~~~~~~l 945 (985)
... .......+|+.|+|||.+....++.++|+ |++|++++++++ +..+....... +.+..+++.+
T Consensus 544 ~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~Di-wSlG~il~ellt~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~l 621 (656)
T 2j0j_A 544 STY-YKASKGKLPIKWMAPESINFRRFTSASDV-WMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTL 621 (656)
T ss_dssp -----------CCGGGCCHHHHHHCCCCHHHHH-HHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHHTCCCCCCTTCCHHH
T ss_pred Ccc-eeccCCCCCcceeCHHHhcCCCCCchhhH-HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCCCCCCCccccHHH
Confidence 322 22233457889999999999999999999 999999999986 66544322111 1223456789
Q ss_pred HHHHHHccCCCCCCCCCHHHHHHHHHHhHhh
Q 001988 946 FSLALECTMESPEKRIDAKDTITRLLKIRDT 976 (985)
Q Consensus 946 ~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~ 976 (985)
.+++.+||..||.+||++.|+++.|+++.+.
T Consensus 622 ~~li~~~l~~dP~~RPs~~el~~~L~~il~~ 652 (656)
T 2j0j_A 622 YSLMTKCWAYDPSRRPRFTELKAQLSTILEE 652 (656)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998765
No 244
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=1.4e-33 Score=319.35 Aligned_cols=234 Identities=21% Similarity=0.254 Sum_probs=187.8
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc--chHHHHHHHHHHHHhcCCCCeeeEEeeeecCC------
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA--STLKSFEAECEVIKNIRHRNLVKIISSCSNDD------ 795 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~------ 795 (985)
.++|...+.||+|+||.||+|... +++.||||++..... ...+.+.+|+.++++++||||+++++++...+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 467999999999999999999865 789999999975432 33567889999999999999999999997654
Q ss_pred ceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCcee
Q 001988 796 FKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKL 875 (985)
Q Consensus 796 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~ 875 (985)
..++||||++ |+|.+.+.. .+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++.
T Consensus 104 ~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~al~~l---H~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~ 176 (371)
T 2xrw_A 104 DVYIVMELMD-ANLCQVIQM---ELDHERMSYLLYQMLCGIKHL---HSAGIIHRDLKPSNIVVKSDCTLKILDFGLART 176 (371)
T ss_dssp EEEEEEECCS-EEHHHHHHS---CCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCCGGGEEECTTSCEEECCCCC---
T ss_pred ceEEEEEcCC-CCHHHHHhh---ccCHHHHHHHHHHHHHHHHHH---HHCCeecccCCHHHEEEcCCCCEEEEEeecccc
Confidence 6799999996 478888863 478999999999999999999 788999999999999999999999999999987
Q ss_pred ccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh-------------------
Q 001988 876 LSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA------------------- 936 (985)
Q Consensus 876 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~------------------- 936 (985)
.... .......||+.|+|||.+.+..++.++|+ |++|+++++++++..++.......
T Consensus 177 ~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~Di-wslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~ 252 (371)
T 2xrw_A 177 AGTS---FMMTPYVVTRYYRAPEVILGMGYKENVDI-WSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKK 252 (371)
T ss_dssp ----------------CTTCCHHHHTTCCCCTTHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHC-CCCCCHHHHTT
T ss_pred cccc---cccCCceecCCccCHHHhcCCCCCchHhH-HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHH
Confidence 5422 12334579999999999999999999999 999999999999886553321100
Q ss_pred ----------------------------------hHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 001988 937 ----------------------------------AKEQCLLSIFSLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 937 ----------------------------------~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
.....+.++.+++.+|+..||++|||+.|+++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h 319 (371)
T 2xrw_A 253 LQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH 319 (371)
T ss_dssp SCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred hhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCC
Confidence 012236778999999999999999999999873
No 245
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.6e-34 Score=323.12 Aligned_cols=239 Identities=25% Similarity=0.298 Sum_probs=198.6
Q ss_pred hcCccCCceeeccCceeEEEEEE----cCCcEEEEEEeccCC----cchHHHHHHHHHHHHhc-CCCCeeeEEeeeecCC
Q 001988 725 TDNFAENNIIGIGGFGSVYRARL----EDGVEIAIKVFHPQC----ASTLKSFEAECEVIKNI-RHRNLVKIISSCSNDD 795 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~----~~~~~vAvK~~~~~~----~~~~~~~~~E~~il~~l-~h~niv~l~~~~~~~~ 795 (985)
.++|...+.||+|+||.||+|+. .+++.||||+++... ......+.+|+++++++ +||||+++++++...+
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 132 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET 132 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence 46899999999999999999987 378999999987542 12345677899999999 6999999999999999
Q ss_pred ceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCcee
Q 001988 796 FKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKL 875 (985)
Q Consensus 796 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~ 875 (985)
..++||||+++|+|.+++.... .+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++.
T Consensus 133 ~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~L---H~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~ 208 (355)
T 1vzo_A 133 KLHLILDYINGGELFTHLSQRE-RFTEHEVQIYVGEIVLALEHL---HKLGIIYRDIKLENILLDSNGHVVLTDFGLSKE 208 (355)
T ss_dssp EEEEEECCCCSCBHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHH---HHTTCCCCCCCGGGEEECTTSCEEESCSSEEEE
T ss_pred eEEEEeecCCCCCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH---HHCCcccCCCCHHHEEECCCCcEEEeeCCCCee
Confidence 9999999999999999998654 689999999999999999999 788999999999999999999999999999987
Q ss_pred ccCCCCcceeccccccccccccccccc--CccchhhhcccccccchhhhcccccccCcchhh---------------hhH
Q 001988 876 LSGEDESTMRTQTLATIGYMAPDEIFV--GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF---------------AAK 938 (985)
Q Consensus 876 ~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~---------------~~~ 938 (985)
+.... .......+||+.|+|||.+.+ ..++.++|+ |++|+++++++++..+....... ..+
T Consensus 209 ~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~Dv-wslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 286 (355)
T 1vzo_A 209 FVADE-TERAYDFCGTIEYMAPDIVRGGDSGHDKAVDW-WSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYP 286 (355)
T ss_dssp CCGGG-GGGGCGGGSCCTTCCHHHHTTCC---CTHHHH-HHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCCCCC
T ss_pred cccCC-CCcccCcccCcCccChhhhcCCCCCCCchhhH-HHHHHHHHHHHHCCCCCccCCccchHHHHHHHHhccCCCCC
Confidence 64222 222334579999999999885 347889999 99999999999998765422110 112
Q ss_pred HHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHH
Q 001988 939 EQCLLSIFSLALECTMESPEKRI-----DAKDTITR 969 (985)
Q Consensus 939 ~~~~~~l~~l~~~cl~~~P~~RP-----t~~ev~~~ 969 (985)
..++..+.+++.+||..||.+|| ++.|+++.
T Consensus 287 ~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h 322 (355)
T 1vzo_A 287 QEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH 322 (355)
T ss_dssp TTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTS
T ss_pred cccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcC
Confidence 23456789999999999999999 89998864
No 246
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.2e-34 Score=318.91 Aligned_cols=246 Identities=24% Similarity=0.322 Sum_probs=196.8
Q ss_pred cCHHHHHHHhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhc-CCCCeeeEEeeeec
Q 001988 716 FSYFELLRATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNI-RHRNLVKIISSCSN 793 (985)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l-~h~niv~l~~~~~~ 793 (985)
+++.++....++|+..+.||+|+||.||+|+.. +++.||||++.... .....+.+|+++++++ +||||+++++++..
T Consensus 14 ~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~ 92 (326)
T 2x7f_A 14 IDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIK 92 (326)
T ss_dssp --CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEEEEEE
T ss_pred ccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeeeEEee
Confidence 334444456788999999999999999999974 78999999987543 3457889999999999 79999999999976
Q ss_pred ------CCceEEEEeccCCCChHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEE
Q 001988 794 ------DDFKALVLEYMSNGSLEDCLHSS-NCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAH 866 (985)
Q Consensus 794 ------~~~~~lv~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~k 866 (985)
.+..++||||+++|+|.+++... ...+++..+..++.|++.||+|| |++||+||||||+||+++.++.+|
T Consensus 93 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~l---H~~~ivH~dlkp~NIl~~~~~~~k 169 (326)
T 2x7f_A 93 KNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHL---HQHKVIHRDIKGQNVLLTENAEVK 169 (326)
T ss_dssp CC--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHH---HHTTCCCCCCSGGGEEECTTCCEE
T ss_pred ccCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHH---HHCCccccCCcHHHEEEcCCCCEE
Confidence 46789999999999999999864 34688999999999999999999 788999999999999999999999
Q ss_pred EecccCceeccCCCCcceecccccccccccccccc-----cCccchhhhcccccccchhhhcccccccCcchhhhh----
Q 001988 867 LSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIF-----VGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA---- 937 (985)
Q Consensus 867 l~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~---- 937 (985)
|+|||++..+.... .......||+.|+|||.+. ...++.++|+ |++|+++++++++..+.........
T Consensus 170 l~Dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di-~slG~il~~l~~g~~p~~~~~~~~~~~~~ 246 (326)
T 2x7f_A 170 LVDFGVSAQLDRTV--GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDL-WSLGITAIEMAEGAPPLCDMHPMRALFLI 246 (326)
T ss_dssp ECCCTTTC---------------CCGGGCCHHHHC--------CCTTHHH-HHHHHHHHHHHHSSCTTTTSCHHHHHHHH
T ss_pred EeeCcCceecCcCc--cccccccCCccccChhhhccccccCcCCCccchH-HHHHHHHHHHHhCCCCCCCCcHHHHHHHh
Confidence 99999998764221 1223456999999999987 5678899999 9999999999998876543221111
Q ss_pred ---------HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 938 ---------KEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 938 ---------~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
...++..+.+++.+||..||.+||++.++++
T Consensus 247 ~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 286 (326)
T 2x7f_A 247 PRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRPATEQLMK 286 (326)
T ss_dssp HHSCCCCCSCSCSCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred hcCccccCCccccCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 1124577999999999999999999999987
No 247
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=1.6e-33 Score=307.75 Aligned_cols=233 Identities=22% Similarity=0.328 Sum_probs=193.6
Q ss_pred cCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC--cchHHHHHHHHHHHHhcCCCCeeeEEeeeec----CCceE
Q 001988 726 DNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC--ASTLKSFEAECEVIKNIRHRNLVKIISSCSN----DDFKA 798 (985)
Q Consensus 726 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~--~~~~~~~~~E~~il~~l~h~niv~l~~~~~~----~~~~~ 798 (985)
..|...+.||+|+||.||+|... +++.||+|++.... ....+.+.+|++++++++||||+++++++.. ....+
T Consensus 26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 105 (290)
T 1t4h_A 26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV 105 (290)
T ss_dssp CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEE
T ss_pred eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEE
Confidence 34677788999999999999865 78899999987543 2345678999999999999999999998865 45689
Q ss_pred EEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCC--eEeCCCCCCCEEEc-CCCcEEEecccCcee
Q 001988 799 LVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTP--IIHCDLKPSNVLLD-EDMVAHLSDFGMAKL 875 (985)
Q Consensus 799 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~--ivHrDlk~~Nill~-~~~~~kl~DfGla~~ 875 (985)
+||||+++|+|.+++.... .+++..+..++.|++.||+|| |+.+ |+||||||+||+++ +++.+||+|||+++.
T Consensus 106 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~l---H~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~ 181 (290)
T 1t4h_A 106 LVTELMTSGTLKTYLKRFK-VMKIKVLRSWCRQILKGLQFL---HTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATL 181 (290)
T ss_dssp EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHH---HTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGG
T ss_pred EEEEecCCCCHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHH---HcCCCCEEECCCCHHHEEEECCCCCEEEeeCCCccc
Confidence 9999999999999998653 688999999999999999999 6777 99999999999997 889999999999976
Q ss_pred ccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh--------------hhHHHH
Q 001988 876 LSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF--------------AAKEQC 941 (985)
Q Consensus 876 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~--------------~~~~~~ 941 (985)
.... ......||+.|+|||.+. +.++.++|+ |++|+++++++++..+....... ..+...
T Consensus 182 ~~~~----~~~~~~~t~~y~aPE~~~-~~~~~~~Di-~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (290)
T 1t4h_A 182 KRAS----FAKAVIGTPEFMAPEMYE-EKYDESVDV-YAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVA 255 (290)
T ss_dssp CCTT----SBEESCSSCCCCCGGGGG-TCCCTHHHH-HHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCC
T ss_pred cccc----ccccccCCcCcCCHHHHh-ccCCCcchH-HHHHHHHHHHHhCCCCCCCcCcHHHHHHHHhccCCccccCCCC
Confidence 4322 223456999999999765 568999999 99999999999988765432111 111223
Q ss_pred HHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 942 LLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 942 ~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
++++.+++.+||..||.+||++.|+++
T Consensus 256 ~~~l~~li~~~l~~dp~~Rps~~ell~ 282 (290)
T 1t4h_A 256 IPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp CHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CHHHHHHHHHHccCChhhCCCHHHHhh
Confidence 467999999999999999999999985
No 248
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=5.4e-34 Score=334.88 Aligned_cols=235 Identities=24% Similarity=0.345 Sum_probs=202.4
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC---cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC---ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~---~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv 800 (985)
.++|...+.||+|+||.||+|+.. +++.||||++.... ......+.+|++++++++||||+++++++.+.+..++|
T Consensus 25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 104 (484)
T 3nyv_A 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV 104 (484)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 467999999999999999999976 88999999996542 23467789999999999999999999999999999999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEE---cCCCcEEEecccCceecc
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLL---DEDMVAHLSDFGMAKLLS 877 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill---~~~~~~kl~DfGla~~~~ 877 (985)
|||+++|+|.+++.... .+++..+..++.|++.||+|| |++||+||||||+||++ +.++.+||+|||+++.+.
T Consensus 105 ~e~~~~~~L~~~~~~~~-~~~~~~~~~i~~qi~~~l~~l---H~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~ 180 (484)
T 3nyv_A 105 GEVYTGGELFDEIISRK-RFSEVDAARIIRQVLSGITYM---HKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFE 180 (484)
T ss_dssp ECCCCSCBHHHHHHTCS-CCBHHHHHHHHHHHHHHHHHH---HHTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBC
T ss_pred EecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HHCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcc
Confidence 99999999999997654 689999999999999999999 78899999999999999 567899999999998765
Q ss_pred CCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh---------------hhHHHHH
Q 001988 878 GEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF---------------AAKEQCL 942 (985)
Q Consensus 878 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~---------------~~~~~~~ 942 (985)
.... ....+||+.|+|||.+.+ .++.++|+ |++|+++++++++..++...... +....++
T Consensus 181 ~~~~---~~~~~gt~~y~aPE~~~~-~~~~~~Di-wslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s 255 (484)
T 3nyv_A 181 ASKK---MKDKIGTAYYIAPEVLHG-TYDEKCDV-WSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKVS 255 (484)
T ss_dssp CCCS---HHHHTTGGGTCCHHHHHT-CCCTHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSGGGGGSC
T ss_pred cccc---cccCCCCccccCceeecC-CCCCccee-HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCCcccccCC
Confidence 3322 234569999999998755 78999999 99999999999998776543211 1223456
Q ss_pred HHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 943 LSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 943 ~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
+++.+++.+|+..+|.+|||+.|+++
T Consensus 256 ~~~~~li~~~L~~dp~~R~s~~e~l~ 281 (484)
T 3nyv_A 256 ESAKDLIRKMLTYVPSMRISARDALD 281 (484)
T ss_dssp HHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHHHCCCChhHCcCHHHHhh
Confidence 78999999999999999999999986
No 249
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=1.7e-33 Score=308.88 Aligned_cols=237 Identities=23% Similarity=0.301 Sum_probs=201.0
Q ss_pred HhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc---------chHHHHHHHHHHHHhcC-CCCeeeEEeeee
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA---------STLKSFEAECEVIKNIR-HRNLVKIISSCS 792 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~---------~~~~~~~~E~~il~~l~-h~niv~l~~~~~ 792 (985)
..++|...+.||+|+||.||+|... +++.||||+++.... ...+.+.+|+++++++. ||||+++++++.
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~ 94 (298)
T 1phk_A 15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE 94 (298)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence 4578999999999999999999975 789999999975531 12356789999999995 999999999999
Q ss_pred cCCceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccC
Q 001988 793 NDDFKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGM 872 (985)
Q Consensus 793 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGl 872 (985)
..+..++||||+++++|.+++.... .+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+
T Consensus 95 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~l---H~~~i~H~dl~p~Nil~~~~~~~kl~dfg~ 170 (298)
T 1phk_A 95 TNTFFFLVFDLMKKGELFDYLTEKV-TLSEKETRKIMRALLEVICAL---HKLNIVHRDLKPENILLDDDMNIKLTDFGF 170 (298)
T ss_dssp CSSEEEEEEECCTTCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred cCCeEEEEEeccCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHH---HHCCcccCCCCcceEEEcCCCcEEEecccc
Confidence 9999999999999999999998653 689999999999999999999 789999999999999999999999999999
Q ss_pred ceeccCCCCcceecccccccccccccccc------cCccchhhhcccccccchhhhcccccccCcchhhh----------
Q 001988 873 AKLLSGEDESTMRTQTLATIGYMAPDEIF------VGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA---------- 936 (985)
Q Consensus 873 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~---------- 936 (985)
+..+.... ......||+.|+|||.+. ...++.++|+ |++|+++++++++..+........
T Consensus 171 ~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di-~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~ 246 (298)
T 1phk_A 171 SCQLDPGE---KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDM-WSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNY 246 (298)
T ss_dssp CEECCTTC---CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCC
T ss_pred hhhcCCCc---ccccccCCccccCHHHhccccccccccCCccccc-HhHHHHHHHHHHCCCCCcCccHHHHHHHHhcCCc
Confidence 98865322 223456999999999875 4567889999 999999999999887654322111
Q ss_pred -----hHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 937 -----AKEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 937 -----~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
....++.++.+++.+|+..||.+||++.|+++
T Consensus 247 ~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 247 QFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp CCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred ccCcccccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence 11245678999999999999999999999975
No 250
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=2.8e-33 Score=322.49 Aligned_cols=233 Identities=19% Similarity=0.254 Sum_probs=196.0
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhc------CCCCeeeEEeeeecCCce
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNI------RHRNLVKIISSCSNDDFK 797 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l------~h~niv~l~~~~~~~~~~ 797 (985)
..+|...+.||+|+||.||+|... +++.||||+++.. ......+.+|+++++.+ +|+||+++++++...++.
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~ 174 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHI 174 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEE
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeE
Confidence 457899999999999999999865 6899999999754 23346778899999887 577999999999999999
Q ss_pred EEEEeccCCCChHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCc--EEEecccCce
Q 001988 798 ALVLEYMSNGSLEDCLHSSN-CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMV--AHLSDFGMAK 874 (985)
Q Consensus 798 ~lv~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~--~kl~DfGla~ 874 (985)
++||||++ ++|.+++.... ..+++..+..++.||+.||+|| |++||+||||||+|||++.++. +||+|||+++
T Consensus 175 ~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~L---H~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~ 250 (429)
T 3kvw_A 175 CMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDAL---HKNRIIHCDLKPENILLKQQGRSGIKVIDFGSSC 250 (429)
T ss_dssp EEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHH---HHHTEECSCCSGGGEEESSTTSCCEEECCCTTCE
T ss_pred EEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH---HHCCeecCCCCHHHeEEccCCCcceEEeecccce
Confidence 99999995 69999988763 4589999999999999999999 6889999999999999999987 9999999998
Q ss_pred eccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhhhH----------------
Q 001988 875 LLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAAK---------------- 938 (985)
Q Consensus 875 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~~---------------- 938 (985)
..... ....+||+.|+|||.+.+..++.++|+ |++|+++++++++..+..........
T Consensus 251 ~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di-wSlG~il~elltG~~pf~~~~~~~~l~~i~~~~~~p~~~~~~ 324 (429)
T 3kvw_A 251 YEHQR-----VYTYIQSRFYRAPEVILGARYGMPIDM-WSLGCILAELLTGYPLLPGEDEGDQLACMIELLGMPSQKLLD 324 (429)
T ss_dssp ETTCC-----CCSSCSCGGGCCHHHHHTBCCCTHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHH
T ss_pred ecCCc-----ccccCCCCCccChHHHhCCCCCchHHH-HhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHH
Confidence 75322 223579999999999999999999999 99999999999987655332111100
Q ss_pred ------------------------------------------------------HHHHHHHHHHHHHccCCCCCCCCCHH
Q 001988 939 ------------------------------------------------------EQCLLSIFSLALECTMESPEKRIDAK 964 (985)
Q Consensus 939 ------------------------------------------------------~~~~~~l~~l~~~cl~~~P~~RPt~~ 964 (985)
....+++.+++.+||..||++|||+.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dli~~~L~~dP~~Rpta~ 404 (429)
T 3kvw_A 325 ASKRAKNFVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPG 404 (429)
T ss_dssp TBTTHHHHBCTTSCBTTSCEECCCC--CEECCEECTTCCEECSTTCSCHHHHTTTCCCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred hhhhhhhccCCCCCcccccccccccccccccccccchhhccCCccchhhHhhccccchHHHHHHHHHHCCCChhhCCCHH
Confidence 00145688999999999999999999
Q ss_pred HHHH
Q 001988 965 DTIT 968 (985)
Q Consensus 965 ev~~ 968 (985)
|+++
T Consensus 405 e~L~ 408 (429)
T 3kvw_A 405 QALR 408 (429)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 9986
No 251
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.3e-33 Score=321.20 Aligned_cols=235 Identities=21% Similarity=0.304 Sum_probs=190.6
Q ss_pred HHHhcCccCCceeeccCceeEEEEEE-cCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeec-------
Q 001988 722 LRATDNFAENNIIGIGGFGSVYRARL-EDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSN------- 793 (985)
Q Consensus 722 ~~~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~------- 793 (985)
....++|...+.||+|+||.||+|+. .+|+.||||++..... ...+|++++++++||||+++++++..
T Consensus 3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~ 78 (383)
T 3eb0_A 3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPK 78 (383)
T ss_dssp ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHTTCCCTTBCCEEEEEEEC------
T ss_pred ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHHHHcCCCCccchhheeeecCccccc
Confidence 34567899999999999999999986 4899999999865422 23479999999999999999999843
Q ss_pred -------------------------------CCceEEEEeccCCCChHHHhhc---CCCCCCHHHHHHHHHHHHHHHHHH
Q 001988 794 -------------------------------DDFKALVLEYMSNGSLEDCLHS---SNCALNIFCRLNIMIDIASALEYL 839 (985)
Q Consensus 794 -------------------------------~~~~~lv~e~~~~gsL~~~l~~---~~~~~~~~~~~~i~~~i~~~L~~L 839 (985)
..+.++||||++ |+|.+.+.. .+..+++..+..++.|+++||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~L 157 (383)
T 3eb0_A 79 PPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFI 157 (383)
T ss_dssp -------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 334789999997 588777653 345789999999999999999999
Q ss_pred HhcCCCCeEeCCCCCCCEEEc-CCCcEEEecccCceeccCCCCcceecccccccccccccccccC-ccchhhhccccccc
Q 001988 840 HFGHSTPIIHCDLKPSNVLLD-EDMVAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVG-ELSLKRWVNDLLPV 917 (985)
Q Consensus 840 h~~h~~~ivHrDlk~~Nill~-~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~dv~~~~g~ 917 (985)
|++||+||||||+||+++ +++.+||+|||+|+.+..... .....||+.|+|||.+.+. .++.++|+ |++|+
T Consensus 158 ---H~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~Di-wslG~ 230 (383)
T 3eb0_A 158 ---HSLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEP---SVAYICSRFYRAPELMLGATEYTPSIDL-WSIGC 230 (383)
T ss_dssp ---HTTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSC---CCCCCCCSSCCCHHHHTTCSSCCTHHHH-HHHHH
T ss_pred ---HHCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCC---CcCcccCCCccCHHHhcCCCCCCcchhh-hhHHH
Confidence 789999999999999998 689999999999997643322 2345689999999998765 48999999 99999
Q ss_pred chhhhcccccccCcchhhhh----------------------------------------HHHHHHHHHHHHHHccCCCC
Q 001988 918 SLVEVVDKSLLSGEEKHFAA----------------------------------------KEQCLLSIFSLALECTMESP 957 (985)
Q Consensus 918 ~~~~i~~~~~~~~~~~~~~~----------------------------------------~~~~~~~l~~l~~~cl~~~P 957 (985)
++++++++..++........ ++.++.++.+++.+||..||
T Consensus 231 il~ell~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP 310 (383)
T 3eb0_A 231 VFGELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEP 310 (383)
T ss_dssp HHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSG
T ss_pred HHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCCh
Confidence 99999998876654321111 11235668999999999999
Q ss_pred CCCCCHHHHHH
Q 001988 958 EKRIDAKDTIT 968 (985)
Q Consensus 958 ~~RPt~~ev~~ 968 (985)
.+|||+.|+++
T Consensus 311 ~~R~t~~e~l~ 321 (383)
T 3eb0_A 311 DLRINPYEAMA 321 (383)
T ss_dssp GGSCCHHHHHT
T ss_pred hhCCCHHHHhc
Confidence 99999999984
No 252
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=8.4e-34 Score=311.86 Aligned_cols=240 Identities=25% Similarity=0.306 Sum_probs=190.6
Q ss_pred HhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeec---------
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSN--------- 793 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~--------- 793 (985)
..++|+..+.||+|+||.||+|+.. +++.||||++... ....+.+.+|++++++++||||+++++++.+
T Consensus 4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~ 82 (303)
T 1zy4_A 4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMT 82 (303)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC---
T ss_pred ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhc
Confidence 4578999999999999999999975 7999999998643 3345678999999999999999999998854
Q ss_pred ----CCceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEec
Q 001988 794 ----DDFKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSD 869 (985)
Q Consensus 794 ----~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~D 869 (985)
.+..++||||+++|+|.+++......+++..++.++.|+++||+|| |++||+||||||+||+++.++.+||+|
T Consensus 83 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~L---H~~~i~H~dlkp~Nil~~~~~~~kl~d 159 (303)
T 1zy4_A 83 AVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYI---HSQGIIHRDLKPMNIFIDESRNVKIGD 159 (303)
T ss_dssp ---CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCCGGGEEECTTSCEEECC
T ss_pred ccccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHH---HhCCeecccCCHHhEEEcCCCCEEEee
Confidence 3567899999999999999987766788899999999999999999 788999999999999999999999999
Q ss_pred ccCceeccCCCC------------cceecccccccccccccccccC-ccchhhhcccccccchhhhcccccccCcch---
Q 001988 870 FGMAKLLSGEDE------------STMRTQTLATIGYMAPDEIFVG-ELSLKRWVNDLLPVSLVEVVDKSLLSGEEK--- 933 (985)
Q Consensus 870 fGla~~~~~~~~------------~~~~~~~~gt~~y~aPE~~~~~-~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~--- 933 (985)
||+++....... ........||+.|+|||.+.+. .++.++|+ |++|+++++++++........
T Consensus 160 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di-~slG~il~~l~~p~~~~~~~~~~~ 238 (303)
T 1zy4_A 160 FGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDM-YSLGIIFFEMIYPFSTGMERVNIL 238 (303)
T ss_dssp CCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHH-HHHHHHHHHHHSCCSSHHHHHHHH
T ss_pred CcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhH-HHHHHHHHHHHhccCCchhHHHHH
Confidence 999987642210 1122345699999999998754 68999999 999999999987221100000
Q ss_pred ----------hhhhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 934 ----------HFAAKEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 934 ----------~~~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
.......+++.+.+++.+||..||.+||++.|+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 283 (303)
T 1zy4_A 239 KKLRSVSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLN 283 (303)
T ss_dssp HHHHSTTCCCCTTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred HhccccccccCccccccchHHHHHHHHHHHhcCcccCcCHHHHhC
Confidence 00011224566899999999999999999999986
No 253
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=2.4e-33 Score=316.68 Aligned_cols=237 Identities=22% Similarity=0.294 Sum_probs=196.3
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc-chHHHHHHHHHHHHhcCCCCeeeEEeeeecC-----Cce
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA-STLKSFEAECEVIKNIRHRNLVKIISSCSND-----DFK 797 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l~h~niv~l~~~~~~~-----~~~ 797 (985)
.++|+..+.||+|+||.||+|... +++.||||++..... ...+.+.+|++++++++||||+++++++... ...
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 105 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV 105 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence 467999999999999999999865 788999999975432 2346788999999999999999999999654 368
Q ss_pred EEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceecc
Q 001988 798 ALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLS 877 (985)
Q Consensus 798 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~ 877 (985)
++||||++ |+|.+++... .+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++...
T Consensus 106 ~iv~e~~~-~~L~~~l~~~--~~~~~~~~~i~~qi~~aL~~L---H~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~ 179 (364)
T 3qyz_A 106 YIVQDLME-TDLYKLLKTQ--HLSNDHICYFLYQILRGLKYI---HSANVLHRDLKPSNLLLNTTCDLKICDFGLARVAD 179 (364)
T ss_dssp EEEEECCS-EEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred EEEEcccC-cCHHHHHHhC--CCCHHHHHHHHHHHHHHHHHH---HHCCeecCCCChHhEEECCCCCEEEEeCcceEecC
Confidence 99999996 5999998764 589999999999999999999 78999999999999999999999999999998764
Q ss_pred CCCCcc-eecccccccccccccccccC-ccchhhhcccccccchhhhcccccccCcchhhhhH-----------------
Q 001988 878 GEDEST-MRTQTLATIGYMAPDEIFVG-ELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAAK----------------- 938 (985)
Q Consensus 878 ~~~~~~-~~~~~~gt~~y~aPE~~~~~-~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~~----------------- 938 (985)
...... .....+||+.|+|||.+.++ .++.++|+ |++|+++++++++..++.........
T Consensus 180 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di-wslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~ 258 (364)
T 3qyz_A 180 PDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDI-WSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNC 258 (364)
T ss_dssp GGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHH-HHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHHHHT
T ss_pred CCCCccccccccccccCCCCCHHhcCCCCCCcchhH-HHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHHHHH
Confidence 322211 12345799999999987654 48999999 99999999999988765433211110
Q ss_pred -------------------------HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 939 -------------------------EQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 939 -------------------------~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
..++.++.+++.+|+..||.+|||+.|+++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 313 (364)
T 3qyz_A 259 IINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA 313 (364)
T ss_dssp CCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred hhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 123467899999999999999999999986
No 254
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=2.7e-33 Score=312.07 Aligned_cols=230 Identities=19% Similarity=0.289 Sum_probs=194.5
Q ss_pred hcCccCCceeeccCceeEEEEEE-cCCcEEEEEEeccCCcchHHHHHHHHHHHHhcC-CCCeeeEEeeeec--CCceEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARL-EDGVEIAIKVFHPQCASTLKSFEAECEVIKNIR-HRNLVKIISSCSN--DDFKALV 800 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~-h~niv~l~~~~~~--~~~~~lv 800 (985)
.++|+..+.||+|+||.||+|+. .+++.||||+++.. ..+.+.+|++++++++ ||||+++++++.+ ....++|
T Consensus 35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv 111 (330)
T 3nsz_A 35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV 111 (330)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC---CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc---chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEE
Confidence 36789999999999999999986 47899999999743 3467899999999997 9999999999987 5678999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCC-cEEEecccCceeccCC
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDM-VAHLSDFGMAKLLSGE 879 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~-~~kl~DfGla~~~~~~ 879 (985)
|||+++++|.+++.. +++..+..++.|++.||+|| |++||+||||||+||+++.++ .+||+|||+++.+...
T Consensus 112 ~e~~~~~~l~~~~~~----~~~~~~~~~~~qi~~~l~~l---H~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~ 184 (330)
T 3nsz_A 112 FEHVNNTDFKQLYQT----LTDYDIRFYMYEILKALDYC---HSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPG 184 (330)
T ss_dssp EECCCCCCHHHHGGG----CCHHHHHHHHHHHHHHHHHH---HHTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTT
T ss_pred EeccCchhHHHHHHh----CCHHHHHHHHHHHHHHHHHH---HhCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCC
Confidence 999999999998863 78899999999999999999 789999999999999999777 8999999999876533
Q ss_pred CCcceeccccccccccccccccc-CccchhhhcccccccchhhhcccccccCcchhh-h---------------------
Q 001988 880 DESTMRTQTLATIGYMAPDEIFV-GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF-A--------------------- 936 (985)
Q Consensus 880 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~-~--------------------- 936 (985)
.. .....||+.|+|||.+.+ ..++.++|+ |++|+++++++++..+....... .
T Consensus 185 ~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Di-wslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 260 (330)
T 3nsz_A 185 QE---YNVRVASRYFKGPELLVDYQMYDYSLDM-WSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKY 260 (330)
T ss_dssp CC---CCSCCSCGGGCCHHHHTTCCCCCTHHHH-HHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred Cc---cccccccccccChhhhcCCCcCCchhhH-HHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHh
Confidence 22 234569999999999877 678999999 99999999999988655221100 0
Q ss_pred ---------------------------hHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 937 ---------------------------AKEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 937 ---------------------------~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
.....++++.+++.+|+..||.+|||+.|+++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~ 319 (330)
T 3nsz_A 261 NIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 319 (330)
T ss_dssp TCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred ccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 00014677899999999999999999999986
No 255
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=1.1e-33 Score=310.54 Aligned_cols=236 Identities=24% Similarity=0.356 Sum_probs=196.0
Q ss_pred cCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc--chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEEe
Q 001988 726 DNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA--STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVLE 802 (985)
Q Consensus 726 ~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~e 802 (985)
++|+..+.||+|+||.||+|+.. +++.||||+++.... .....+.+|++++++++||||+++++++...+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 82 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence 57889999999999999999976 789999999875532 224678899999999999999999999999999999999
Q ss_pred ccCCCChHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCC
Q 001988 803 YMSNGSLEDCLHSSN-CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDE 881 (985)
Q Consensus 803 ~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 881 (985)
|++ |+|.+++.... ..+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++......
T Consensus 83 ~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l---H~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~- 157 (299)
T 2r3i_A 83 FLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFC---HSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV- 157 (299)
T ss_dssp CCS-EEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHH---HHTTCCCCCCCGGGEEECTTSCEEECSTTHHHHHCCCS-
T ss_pred ccc-CCHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHH---HHCCccCCCCCHHHeEEcCCCCEEECcchhhhhccCCc-
Confidence 997 69999987653 4688999999999999999999 78899999999999999999999999999998764322
Q ss_pred cceecccccccccccccccccCc-cchhhhcccccccchhhhcccccccCcchhhhh-----------------------
Q 001988 882 STMRTQTLATIGYMAPDEIFVGE-LSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA----------------------- 937 (985)
Q Consensus 882 ~~~~~~~~gt~~y~aPE~~~~~~-~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~----------------------- 937 (985)
.......+|+.|+|||.+.+.. ++.++|+ |++|+++++++++..+.........
T Consensus 158 -~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di-~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (299)
T 2r3i_A 158 -RTYTHEVVTLWYRAPEILLGAKYYSTAVDI-WSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMP 235 (299)
T ss_dssp -BCTTSCBCCCTTCCHHHHTTCSSCCTHHHH-HHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGST
T ss_pred -cccCcccccccccCcHHhhccccCChHHHH-HHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCchhhhhHhhcCc
Confidence 1223446899999999988765 7899999 9999999999998876543221110
Q ss_pred -----------------HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 938 -----------------KEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 938 -----------------~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
....++++.+++.+|+..||++||++.|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~ 283 (299)
T 2r3i_A 236 DYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA 283 (299)
T ss_dssp TCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred ccchhhhcccchhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 0123567899999999999999999999986
No 256
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=9.5e-34 Score=343.38 Aligned_cols=233 Identities=21% Similarity=0.207 Sum_probs=200.1
Q ss_pred HhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC---cchHHHHHHHHHHHHhc-CCCCeeeEEeeeecCCceE
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC---ASTLKSFEAECEVIKNI-RHRNLVKIISSCSNDDFKA 798 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~---~~~~~~~~~E~~il~~l-~h~niv~l~~~~~~~~~~~ 798 (985)
..++|...+.||+|+||.||+|+.. +++.||||++++.. ......+..|.+++..+ +||+|+++++++++.+..|
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~ 418 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 418 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence 4578999999999999999999965 68889999997541 23346678899999987 7999999999999999999
Q ss_pred EEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccC
Q 001988 799 LVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSG 878 (985)
Q Consensus 799 lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~ 878 (985)
+||||++||+|.+++...+ .+++..+..++.||+.||+|| |++|||||||||+|||++.++++||+|||+|+....
T Consensus 419 lV~E~~~gg~L~~~l~~~~-~~~~~~~~~~~~qi~~aL~~L---H~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~ 494 (674)
T 3pfq_A 419 FVMEYVNGGDLMYHIQQVG-RFKEPHAVFYAAEIAIGLFFL---QSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIW 494 (674)
T ss_dssp EEEECCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHH---HHTSEECCCCCSTTEEECSSSCEEECCCTTCEECCC
T ss_pred EEEeCcCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HhCCeEeccCChhhEEEcCCCcEEEeecceeecccc
Confidence 9999999999999998764 689999999999999999999 789999999999999999999999999999987432
Q ss_pred CCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh-----------hHHHHHHHHHH
Q 001988 879 EDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA-----------AKEQCLLSIFS 947 (985)
Q Consensus 879 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~l~~ 947 (985)
.. ......+||+.|+|||++.+..++.++|+ |++|++++|+++|..++....... .+...++++.+
T Consensus 495 ~~--~~~~~~~GT~~Y~APE~l~~~~~~~~~Dv-wSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~ 571 (674)
T 3pfq_A 495 DG--VTTKTFCGTPDYIAPEIIAYQPYGKSVDW-WAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKSMSKEAVA 571 (674)
T ss_dssp TT--CCBCCCCSCSSSCCHHHHTCCCBSTHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHSSCCCCCTTSCHHHHH
T ss_pred CC--cccccccCCCcccCHhhhcCCCCCccceE-echHHHHHHHHcCCCCCCCCCHHHHHHHHHhCCCCCCccCCHHHHH
Confidence 22 23445689999999999999999999999 999999999999988765432221 12235678999
Q ss_pred HHHHccCCCCCCCCCH
Q 001988 948 LALECTMESPEKRIDA 963 (985)
Q Consensus 948 l~~~cl~~~P~~RPt~ 963 (985)
++.+|+..||.+||++
T Consensus 572 li~~lL~~dP~~R~~~ 587 (674)
T 3pfq_A 572 ICKGLMTKHPGKRLGC 587 (674)
T ss_dssp HHHHHSCSSSTTCTTC
T ss_pred HHHHHccCCHHHCCCC
Confidence 9999999999999997
No 257
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=3.9e-33 Score=317.08 Aligned_cols=198 Identities=25% Similarity=0.327 Sum_probs=170.3
Q ss_pred HhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcC-CC-----CeeeEEeeeecCCc
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIR-HR-----NLVKIISSCSNDDF 796 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~-h~-----niv~l~~~~~~~~~ 796 (985)
..++|...+.||+|+||.||+|+.. +++.||||+++.. .....++..|+++++.++ |+ +|+++++++...+.
T Consensus 52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~ 130 (382)
T 2vx3_A 52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNH 130 (382)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTE
T ss_pred eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCc
Confidence 4678999999999999999999865 7889999999754 234567788999999885 55 49999999999999
Q ss_pred eEEEEeccCCCChHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEc--CCCcEEEecccCc
Q 001988 797 KALVLEYMSNGSLEDCLHSSN-CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLD--EDMVAHLSDFGMA 873 (985)
Q Consensus 797 ~~lv~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~--~~~~~kl~DfGla 873 (985)
.++||||++ |+|.+++.... ..+++..+..++.|++.||+|||. |+.||+||||||+||+++ .++.+||+|||++
T Consensus 131 ~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~-~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a 208 (382)
T 2vx3_A 131 LCLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLAT-PELSIIHCDLKPENILLCNPKRSAIKIVDFGSS 208 (382)
T ss_dssp EEEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTS-TTTCEECCCCSGGGEEESSTTSCCEEECCCTTC
T ss_pred eEEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhcc-CCCCEEcCCCCcccEEEecCCCCcEEEEeccCc
Confidence 999999996 59999998763 468999999999999999999953 478999999999999994 5788999999999
Q ss_pred eeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccC
Q 001988 874 KLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSG 930 (985)
Q Consensus 874 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~ 930 (985)
+..... .....||+.|+|||.+.+..++.++|+ |++|+++++++++..++.
T Consensus 209 ~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~Di-wSlG~il~elltg~~pf~ 259 (382)
T 2vx3_A 209 CQLGQR-----IYQYIQSRFYRSPEVLLGMPYDLAIDM-WSLGCILVEMHTGEPLFS 259 (382)
T ss_dssp EETTCC-----CCSSCSCGGGCCHHHHTTCCCCTHHHH-HHHHHHHHHHHHSSCSSC
T ss_pred eecccc-----cccccCCccccChHHHcCCCCCcHHHH-HHHHHHHHHHHhCCCCCC
Confidence 886422 234569999999999999999999999 999999999999887654
No 258
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=5.9e-34 Score=319.91 Aligned_cols=235 Identities=20% Similarity=0.269 Sum_probs=200.4
Q ss_pred hcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcch-----------------HHHHHHHHHHHHhcCCCCeeeE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCAST-----------------LKSFEAECEVIKNIRHRNLVKI 787 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~-----------------~~~~~~E~~il~~l~h~niv~l 787 (985)
.++|...+.||+|+||.||+|+. +++.||||++....... .+.+.+|++++++++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 46899999999999999999999 89999999987542111 1789999999999999999999
Q ss_pred EeeeecCCceEEEEeccCCCChHHH------hhcC-CCCCCHHHHHHHHHHHHHHHHHHHhcCC-CCeEeCCCCCCCEEE
Q 001988 788 ISSCSNDDFKALVLEYMSNGSLEDC------LHSS-NCALNIFCRLNIMIDIASALEYLHFGHS-TPIIHCDLKPSNVLL 859 (985)
Q Consensus 788 ~~~~~~~~~~~lv~e~~~~gsL~~~------l~~~-~~~~~~~~~~~i~~~i~~~L~~Lh~~h~-~~ivHrDlk~~Nill 859 (985)
++++.+.+..++||||+++|+|.++ +... ...+++..+..++.|++.||+|| |+ +||+||||||+||++
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~l---H~~~~i~H~dl~p~Nil~ 185 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYI---HNEKNICHRDVKPSNILM 185 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHH---HHTSCEECCCCCGGGEEE
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHH---hccCCEeecCCChHhEEE
Confidence 9999999999999999999999998 6543 45789999999999999999999 66 999999999999999
Q ss_pred cCCCcEEEecccCceeccCCCCcceecccccccccccccccccC-ccch-hhhcccccccchhhhcccccccCcchh-hh
Q 001988 860 DEDMVAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVG-ELSL-KRWVNDLLPVSLVEVVDKSLLSGEEKH-FA 936 (985)
Q Consensus 860 ~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~~dv~~~~g~~~~~i~~~~~~~~~~~~-~~ 936 (985)
+.++.+||+|||.+...... ......||+.|+|||.+.+. .++. ++|+ |++|+++++++++..+...... ..
T Consensus 186 ~~~~~~kl~dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di-~slG~il~~l~~g~~pf~~~~~~~~ 260 (348)
T 2pml_X 186 DKNGRVKLSDFGESEYMVDK----KIKGSRGTYEFMPPEFFSNESSYNGAKVDI-WSLGICLYVMFYNVVPFSLKISLVE 260 (348)
T ss_dssp CTTSCEEECCCTTCEECBTT----EECSSCSCGGGCCGGGGSSCCCEEHHHHHH-HHHHHHHHHHHHSSCSSCCSSCSHH
T ss_pred cCCCcEEEeccccccccccc----cccCCCCCcCccCchhhcCCCCCCcchhhH-HHHHHHHHHHHhCCCCCCCCCcHHH
Confidence 99999999999999886432 33445699999999999877 6666 8899 9999999999998876543211 00
Q ss_pred -----------hH-------------------HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 937 -----------AK-------------------EQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 937 -----------~~-------------------~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
.+ ..++.++.+++.+||..||.+||++.|+++
T Consensus 261 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~ 322 (348)
T 2pml_X 261 LFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK 322 (348)
T ss_dssp HHHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred HHHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 01 345678999999999999999999999986
No 259
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=1.2e-33 Score=313.57 Aligned_cols=236 Identities=24% Similarity=0.307 Sum_probs=193.8
Q ss_pred HhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc--------chHHHHHHHHHHHHhcCCCCeeeEEeeeecC
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA--------STLKSFEAECEVIKNIRHRNLVKIISSCSND 794 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~--------~~~~~~~~E~~il~~l~h~niv~l~~~~~~~ 794 (985)
..++|...+.||+|+||.||+|... +++.||||++..... .....+.+|++++++++||||+++++++...
T Consensus 8 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~ 87 (322)
T 2ycf_A 8 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE 87 (322)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESS
T ss_pred hhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCC
Confidence 3467999999999999999999875 688999999875421 1223578999999999999999999999766
Q ss_pred CceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCc---EEEeccc
Q 001988 795 DFKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMV---AHLSDFG 871 (985)
Q Consensus 795 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~---~kl~DfG 871 (985)
+ .++||||+++|+|.+++.... .+++.....++.|++.||+|| |++||+||||||+||+++.++. +||+|||
T Consensus 88 ~-~~lv~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~qi~~~l~~l---H~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg 162 (322)
T 2ycf_A 88 D-YYIVLELMEGGELFDKVVGNK-RLKEATCKLYFYQMLLAVQYL---HENGIIHRDLKPENVLLSSQEEDCLIKITDFG 162 (322)
T ss_dssp S-EEEEEECCTTEETHHHHSTTC-CCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCSGGGEEESSSSSSCCEEECCCT
T ss_pred c-eEEEEecCCCCcHHHHHhccC-CCCHHHHHHHHHHHHHHHHHH---HHCCeeccCCCHHHEEEecCCCCCeEEEccCc
Confidence 5 799999999999999987653 689999999999999999999 7889999999999999987664 9999999
Q ss_pred CceeccCCCCcceecccccccccccccccc---cCccchhhhcccccccchhhhcccccccCcchhh-------------
Q 001988 872 MAKLLSGEDESTMRTQTLATIGYMAPDEIF---VGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF------------- 935 (985)
Q Consensus 872 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~------------- 935 (985)
+++..... .......||+.|+|||.+. ...++.++|+ |++|+++++++++..+.......
T Consensus 163 ~~~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di-~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~ 238 (322)
T 2ycf_A 163 HSKILGET---SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDC-WSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYN 238 (322)
T ss_dssp TCEECCCC---HHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHH-HHHHHHHHHHHHSSCSSCSTTCSSCHHHHHHHTCCC
T ss_pred cceecccc---cccccccCCcCccCchhhccCCCCCCCchhhH-HHHHHHHHHHHhCCCCCcccchHHHHHHHHHhCccc
Confidence 99876422 2223456999999999874 5678889999 99999999999988765432111
Q ss_pred ---hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 936 ---AAKEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 936 ---~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
.....+++++.+++.+||..||++||++.|+++
T Consensus 239 ~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 239 FIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp CCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred cCchhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 011234678999999999999999999999984
No 260
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=2.7e-34 Score=325.45 Aligned_cols=244 Identities=13% Similarity=0.083 Sum_probs=184.7
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc---chHHHHHHHHHHHHhc--CCCCeeeEE-------eee
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA---STLKSFEAECEVIKNI--RHRNLVKII-------SSC 791 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~---~~~~~~~~E~~il~~l--~h~niv~l~-------~~~ 791 (985)
..+|...+.||+|+||.||+|++. +++.||||++..... ...+.+.+|+++++.+ +||||++++ +++
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~ 140 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV 140 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence 345888999999999999999965 789999999987643 2345677886555555 699988855 343
Q ss_pred ecC-----------------CceEEEEeccCCCChHHHhhcCCCCCCHHHH------HHHHHHHHHHHHHHHhcCCCCeE
Q 001988 792 SND-----------------DFKALVLEYMSNGSLEDCLHSSNCALNIFCR------LNIMIDIASALEYLHFGHSTPII 848 (985)
Q Consensus 792 ~~~-----------------~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~------~~i~~~i~~~L~~Lh~~h~~~iv 848 (985)
... ...++||||++ |+|.+++...+..+++..+ ..++.|++.||+|| |++||+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~L---H~~~iv 216 (371)
T 3q60_A 141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANL---QSKGLV 216 (371)
T ss_dssp EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHH---HHTTEE
T ss_pred ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHH---HHCCCc
Confidence 322 23799999998 8999999875444555666 77889999999999 789999
Q ss_pred eCCCCCCCEEEcCCCcEEEecccCceeccCCCCcceeccccccccccccccccc--Cccchhhhcccccccchhhhcccc
Q 001988 849 HCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFV--GELSLKRWVNDLLPVSLVEVVDKS 926 (985)
Q Consensus 849 HrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~dv~~~~g~~~~~i~~~~ 926 (985)
||||||+|||++.++.+||+|||+|+.... ......+|+.|+|||.+.+ ..++.++|+ |++|++++++++++
T Consensus 217 HrDikp~NIll~~~~~~kL~DFG~a~~~~~-----~~~~~~~t~~y~aPE~~~~~~~~~~~~~Di-wSlG~il~elltg~ 290 (371)
T 3q60_A 217 HGHFTPDNLFIMPDGRLMLGDVSALWKVGT-----RGPASSVPVTYAPREFLNASTATFTHALNA-WQLGLSIYRVWCLF 290 (371)
T ss_dssp ETTCSGGGEEECTTSCEEECCGGGEEETTC-----EEEGGGSCGGGCCHHHHTCSEEECCHHHHH-HHHHHHHHHHHHSS
T ss_pred cCcCCHHHEEECCCCCEEEEecceeeecCC-----CccCccCCcCCcChhhccCCCCCcCccccH-HHHHHHHHHHHhCC
Confidence 999999999999999999999999987531 1113457799999999987 779999999 99999999999988
Q ss_pred cccCcchh--------------------hhhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH--HHHHhHhhhc
Q 001988 927 LLSGEEKH--------------------FAAKEQCLLSIFSLALECTMESPEKRIDAKDTIT--RLLKIRDTLS 978 (985)
Q Consensus 927 ~~~~~~~~--------------------~~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~--~L~~i~~~~~ 978 (985)
.++..... .+....+++++.+++.+||..||++||++.|+++ .+.++....+
T Consensus 291 ~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~~~ 364 (371)
T 3q60_A 291 LPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQLQNEIS 364 (371)
T ss_dssp CSTTBCCTTCTTCCCBCCTTSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTSHHHHHHHHHHH
T ss_pred CCCCCcCcccccchhhhhhhhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCHHHHHHHHHHh
Confidence 76544310 1111245788999999999999999999999975 4455544433
No 261
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=1.9e-34 Score=317.22 Aligned_cols=242 Identities=23% Similarity=0.316 Sum_probs=182.6
Q ss_pred HHhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC-cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEE
Q 001988 723 RATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC-ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 723 ~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~-~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv 800 (985)
...++|...+.||+|+||.||+|... +++.||||++.... ....+.+.+|++++++++||||+++++++...+..++|
T Consensus 12 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 91 (303)
T 2vwi_A 12 INRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLV 91 (303)
T ss_dssp -CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEE
T ss_pred cchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEE
Confidence 34678999999999999999999854 78999999987543 23456788999999999999999999999999999999
Q ss_pred EeccCCCChHHHhhc-------CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCc
Q 001988 801 LEYMSNGSLEDCLHS-------SNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMA 873 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~-------~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla 873 (985)
|||+++++|.+++.. ....+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||++
T Consensus 92 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~l---H~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~ 168 (303)
T 2vwi_A 92 MKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYL---HKNGQIHRDVKAGNILLGEDGSVQIADFGVS 168 (303)
T ss_dssp EECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHH---HHTTCCCCCCSGGGEEECTTCCEEECCCHHH
T ss_pred ehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHH---HhCCCCCCCCChhhEEEcCCCCEEEEeccch
Confidence 999999999999874 234689999999999999999999 7889999999999999999999999999998
Q ss_pred eeccCCCC---cceeccccccccccccccccc-CccchhhhcccccccchhhhcccccccCcchhhhh------------
Q 001988 874 KLLSGEDE---STMRTQTLATIGYMAPDEIFV-GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA------------ 937 (985)
Q Consensus 874 ~~~~~~~~---~~~~~~~~gt~~y~aPE~~~~-~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~------------ 937 (985)
+.+..... ........||+.|+|||.+.. ..++.++|+ |++|+++++++++..+.........
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di-~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~ 247 (303)
T 2vwi_A 169 AFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADI-WSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSL 247 (303)
T ss_dssp HHCC---------------CCCTTCCHHHHHHHHCCCTHHHH-HHHHHHHHHHHHSSCTTTTSCGGGHHHHHHTSSCCCT
T ss_pred heeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhH-HHHHHHHHHHHhCCCCCccCchhhHHHHHhccCCCcc
Confidence 77643221 112234569999999999876 568899999 9999999999998876543211110
Q ss_pred ---------HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 938 ---------KEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 938 ---------~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
...++.++.+++.+||..||.+||++.|+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 287 (303)
T 2vwi_A 248 ETGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLR 287 (303)
T ss_dssp TC-----CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred ccccccchhhhhhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 0124567899999999999999999999986
No 262
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=319.04 Aligned_cols=251 Identities=22% Similarity=0.257 Sum_probs=200.2
Q ss_pred HHHhcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCc--chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEE
Q 001988 722 LRATDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCA--STLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKAL 799 (985)
Q Consensus 722 ~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~l 799 (985)
....++|+..+.||+|+||.||+|+.++ .||+|+++.... ...+.+.+|++++++++||||+++++++.+.+..++
T Consensus 29 ~i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~i 106 (319)
T 2y4i_B 29 DIPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAI 106 (319)
T ss_dssp SSCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEE
T ss_pred cCCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEE
Confidence 3346789999999999999999999863 499999875422 234567889999999999999999999999999999
Q ss_pred EEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCC
Q 001988 800 VLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGE 879 (985)
Q Consensus 800 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~ 879 (985)
||||+++++|.+++...+..+++..+..++.|++.||+|| |++||+||||||+||+++ ++.+||+|||+++.....
T Consensus 107 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~l---H~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~ 182 (319)
T 2y4i_B 107 ITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYL---HAKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVL 182 (319)
T ss_dssp ECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHH---HHTTCCCCCCCSTTEEEC---CCEECCCSCCC-----
T ss_pred EeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH---HhCCccccCCChhhEEEe-CCCEEEeecCCccccccc
Confidence 9999999999999988766789999999999999999999 788999999999999998 689999999998765321
Q ss_pred CC---cceeccccccccccccccccc---------CccchhhhcccccccchhhhcccccccCcchhhhhH---------
Q 001988 880 DE---STMRTQTLATIGYMAPDEIFV---------GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAAK--------- 938 (985)
Q Consensus 880 ~~---~~~~~~~~gt~~y~aPE~~~~---------~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~~--------- 938 (985)
.. ........||+.|+|||.+.. ..++.++|+ |++|+++++++++..+..........
T Consensus 183 ~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di-~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~ 261 (319)
T 2y4i_B 183 QAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDV-FALGTIWYELHAREWPFKTQPAEAIIWQMGTGMKP 261 (319)
T ss_dssp -----CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHH-HHHHHHHHHHHHSSCSSSSCCHHHHHHHHHTTCCC
T ss_pred cccccccccccCCCcccccChHHhhhccccccccccCCCchhhH-HHHHHHHHHHHhCCCCCCCCCHHHHHHHhccCCCC
Confidence 11 112233458999999998864 457889999 99999999999988765543211111
Q ss_pred ----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhhcc
Q 001988 939 ----EQCLLSIFSLALECTMESPEKRIDAKDTITRLLKIRDTLSK 979 (985)
Q Consensus 939 ----~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~~~ 979 (985)
..++.++.+++.+||..+|.+||++.++++.|+++.++..+
T Consensus 262 ~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~~~ 306 (319)
T 2y4i_B 262 NLSQIGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRNRR 306 (319)
T ss_dssp CCCCSSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC------
T ss_pred CCCcCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhhcc
Confidence 12456799999999999999999999999999998876543
No 263
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=310.75 Aligned_cols=237 Identities=22% Similarity=0.307 Sum_probs=190.3
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeee-----------
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCS----------- 792 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~----------- 792 (985)
.++|...+.||+|+||.||+|... +++.||+|++........+.+.+|++++++++||||+++++++.
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 89 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG 89 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence 467899999999999999999976 58999999998766566778899999999999999999999874
Q ss_pred ---cCCceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEc-CCCcEEEe
Q 001988 793 ---NDDFKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLD-EDMVAHLS 868 (985)
Q Consensus 793 ---~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~-~~~~~kl~ 868 (985)
+.+..++||||++ |+|.+++... .+++..+..++.|++.||+|| |++||+||||||+||+++ +++.+||+
T Consensus 90 ~~~~~~~~~lv~e~~~-~~L~~~~~~~--~~~~~~~~~~~~qi~~~l~~l---H~~~i~H~dlkp~Nil~~~~~~~~kl~ 163 (320)
T 2i6l_A 90 SLTELNSVYIVQEYME-TDLANVLEQG--PLLEEHARLFMYQLLRGLKYI---HSANVLHRDLKPANLFINTEDLVLKIG 163 (320)
T ss_dssp -CCSCSEEEEEEECCS-EEHHHHHTTC--CCCHHHHHHHHHHHHHHHHHH---HHTTCBCCCCSGGGEEEETTTTEEEEC
T ss_pred cccccCceeEEeeccC-CCHHHHhhcC--CccHHHHHHHHHHHHHHHHHH---HhCCEecCCCCHHHEEEcCCCCeEEEc
Confidence 3467899999997 6999998753 588999999999999999999 788999999999999997 56799999
Q ss_pred cccCceeccCCCC-cceeccccccccccccccccc-CccchhhhcccccccchhhhcccccccCcchhhhh---------
Q 001988 869 DFGMAKLLSGEDE-STMRTQTLATIGYMAPDEIFV-GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA--------- 937 (985)
Q Consensus 869 DfGla~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~-~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~--------- 937 (985)
|||+++....... ........+|+.|+|||.+.. ..++.++|+ |++|++++++++++.+.........
T Consensus 164 Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di-~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~ 242 (320)
T 2i6l_A 164 DFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDM-WAAGCIFAEMLTGKTLFAGAHELEQMQLILESIP 242 (320)
T ss_dssp CCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHSC
T ss_pred cCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhh-HhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcC
Confidence 9999987643211 112234457999999998876 678999999 9999999999998876543321110
Q ss_pred --------------------------------HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 938 --------------------------------KEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 938 --------------------------------~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
...++.++.+++.+|+..||.+||++.|+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (320)
T 2i6l_A 243 VVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS 305 (320)
T ss_dssp CCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred CCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence 0124677999999999999999999999986
No 264
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=9.5e-34 Score=313.14 Aligned_cols=247 Identities=21% Similarity=0.292 Sum_probs=196.2
Q ss_pred cCHHHHHHHhcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCc--chHHHHHHHHHHHHhcC--CCCeeeEEeee
Q 001988 716 FSYFELLRATDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCA--STLKSFEAECEVIKNIR--HRNLVKIISSC 791 (985)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~--h~niv~l~~~~ 791 (985)
+.+..+....++|+..+.||+|+||.||+|...+++.||||++..... ...+.+.+|++++++++ ||||+++++++
T Consensus 18 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~ 97 (313)
T 3cek_A 18 LYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYE 97 (313)
T ss_dssp --CCEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEE
T ss_pred CCeeeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEe
Confidence 333334445678999999999999999999988899999999975532 34567899999999997 59999999999
Q ss_pred ecCCceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEeccc
Q 001988 792 SNDDFKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFG 871 (985)
Q Consensus 792 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfG 871 (985)
...+..++||| +.+++|.+++.... .+++..+..++.|+++||+|| |++||+||||||+||++++ +.+||+|||
T Consensus 98 ~~~~~~~lv~e-~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~aL~~L---H~~~ivH~dlkp~NIl~~~-~~~kL~Dfg 171 (313)
T 3cek_A 98 ITDQYIYMVME-CGNIDLNSWLKKKK-SIDPWERKSYWKNMLEAVHTI---HQHGIVHSDLKPANFLIVD-GMLKLIDFG 171 (313)
T ss_dssp ECSSEEEEEEC-CCSEEHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHH---HHTTCCCCCCCGGGEEEET-TEEEECCCS
T ss_pred ecCCEEEEEEe-cCCCcHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HHCCceecCCCcccEEEEC-CeEEEeecc
Confidence 99999999999 55889999998754 689999999999999999999 7889999999999999965 899999999
Q ss_pred CceeccCCCCcceeccccccccccccccccc-----------CccchhhhcccccccchhhhcccccccCcchhh-h---
Q 001988 872 MAKLLSGEDESTMRTQTLATIGYMAPDEIFV-----------GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF-A--- 936 (985)
Q Consensus 872 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~-~--- 936 (985)
+++.+.............||+.|+|||.+.. ..++.++|+ |++|+++++++++..+....... .
T Consensus 172 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di-~slG~il~el~~g~~pf~~~~~~~~~~~ 250 (313)
T 3cek_A 172 IANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDV-WSLGCILYYMTYGKTPFQQIINQISKLH 250 (313)
T ss_dssp SSCC--------------CCGGGCCHHHHTTCC----------CCCHHHHH-HHHHHHHHHHHHSSCTTTTCCSHHHHHH
T ss_pred ccccccCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHH-HHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 9987754333333344569999999999865 578889999 99999999999988765432111 0
Q ss_pred ----------hHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 001988 937 ----------AKEQCLLSIFSLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 937 ----------~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
.+..++.++.+++.+||..||.+||++.|+++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 293 (313)
T 3cek_A 251 AIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 293 (313)
T ss_dssp HHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred HHHhcccccCCcccchHHHHHHHHHHccCCcccCcCHHHHhcC
Confidence 111235679999999999999999999999864
No 265
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=1.8e-33 Score=307.32 Aligned_cols=236 Identities=21% Similarity=0.264 Sum_probs=183.0
Q ss_pred hcCccCCceeeccCceeEEEEEE-cCCcEEEEEEeccCCcc-hHH-HHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARL-EDGVEIAIKVFHPQCAS-TLK-SFEAECEVIKNIRHRNLVKIISSCSNDDFKALVL 801 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vAvK~~~~~~~~-~~~-~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~ 801 (985)
.++|+..+.||+|+||.||+|+. .+++.||+|+++..... ... .+..+...++.++||||+++++++.+.+..++||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 85 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 85 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence 47899999999999999999997 47899999999765322 222 3344555577789999999999999999999999
Q ss_pred eccCCCChHHHhhc---CCCCCCHHHHHHHHHHHHHHHHHHHhcCCC-CeEeCCCCCCCEEEcCCCcEEEecccCceecc
Q 001988 802 EYMSNGSLEDCLHS---SNCALNIFCRLNIMIDIASALEYLHFGHST-PIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLS 877 (985)
Q Consensus 802 e~~~~gsL~~~l~~---~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~-~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~ 877 (985)
||++ |+|.+++.. ....+++..+..++.|++.||+|| |++ ||+||||||+||+++.++.+||+|||+++...
T Consensus 86 e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~l---H~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 161 (290)
T 3fme_A 86 ELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHL---HSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLV 161 (290)
T ss_dssp ECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH---HHHSCCCCCCCSGGGCEECTTCCEEBCCC-------
T ss_pred ehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH---hhcCCeecCCCCHHHEEECCCCCEEEeecCCccccc
Confidence 9997 588877754 355789999999999999999999 676 99999999999999999999999999998764
Q ss_pred CCCCcceeccccccccccccccc----ccCccchhhhcccccccchhhhcccccccCcchh-hh-------------hHH
Q 001988 878 GEDESTMRTQTLATIGYMAPDEI----FVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKH-FA-------------AKE 939 (985)
Q Consensus 878 ~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~-~~-------------~~~ 939 (985)
... ......||+.|+|||.+ ....++.++|+ |++|+++++++++..+...... .. ...
T Consensus 162 ~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di-~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (290)
T 3fme_A 162 DDV---AKDIDAGCKPYMAPERINPELNQKGYSVKSDI-WSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQLPAD 237 (290)
T ss_dssp -----------CCCCCCSCHHHHSCCTTC--CCHHHHH-HHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCCCCCTT
T ss_pred ccc---cccccCCCccccChhhcChhhcCcCCCcHHHH-HHHHHHHHHHHHCCCCccccCchHHHHHHHhccCCCCcccc
Confidence 322 22334699999999995 56778999999 9999999999999876643211 10 112
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 940 QCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 940 ~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
.++.++.+++.+|+..||++||++.|+++
T Consensus 238 ~~~~~~~~li~~~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 238 KFSAEFVDFTSQCLKKNSKERPTYPELMQ 266 (290)
T ss_dssp TSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred cCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence 35678999999999999999999999987
No 266
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=1.4e-33 Score=318.00 Aligned_cols=233 Identities=23% Similarity=0.298 Sum_probs=178.4
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc--chHHHHHHHHHHHHhcCCCCeeeEEeeeecC------C
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA--STLKSFEAECEVIKNIRHRNLVKIISSCSND------D 795 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~--~~~~~~~~E~~il~~l~h~niv~l~~~~~~~------~ 795 (985)
.++|...+.||+|+||.||+|... +|+.||||++..... ...+.+.+|++++++++||||+++++++... .
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 468999999999999999999864 789999999975432 3456788999999999999999999998654 5
Q ss_pred ceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCcee
Q 001988 796 FKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKL 875 (985)
Q Consensus 796 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~ 875 (985)
..++||||+ +++|.+++.. ..+++..+..++.||++||+|| |++||+||||||+||+++.++.+||+|||+++.
T Consensus 108 ~~~lv~e~~-~~~L~~~~~~--~~l~~~~~~~i~~qi~~aL~~L---H~~givH~Dlkp~NIll~~~~~~kL~DFG~a~~ 181 (367)
T 2fst_X 108 DVYLVTHLM-GADLNNIVKC--QKLTDDHVQFLIYQILRGLKYI---HSADIIHRDLKPSNLAVNEDCELKILDFGLARH 181 (367)
T ss_dssp CCEEEEECC-CEECC-------CCCCHHHHHHHHHHHHHHHHHH---HHTTCCCCCCCGGGEEECTTCCEEECC------
T ss_pred eEEEEeccc-CCCHHHHHhc--CCCCHHHHHHHHHHHHHHHHHH---HHCCeeeCCCCHhhEEECCCCCEEEeecccccc
Confidence 679999999 7899998876 3689999999999999999999 789999999999999999999999999999987
Q ss_pred ccCCCCcceeccccccccccccccccc-CccchhhhcccccccchhhhcccccccCcchhhhhH----------------
Q 001988 876 LSGEDESTMRTQTLATIGYMAPDEIFV-GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAAK---------------- 938 (985)
Q Consensus 876 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~~---------------- 938 (985)
.... ....+||+.|+|||.+.+ ..++.++|+ |++|++++++++|..++.........
T Consensus 182 ~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~Di-wslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~ 255 (367)
T 2fst_X 182 TADE-----MTGYVATRWYRAPEIMLNWMHYNQTVDI-WSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLK 255 (367)
T ss_dssp --------------CCCTTCCHHHHTTCCSCCTTHHH-HHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHT
T ss_pred cccc-----CCCcCcCcCccChHHHcCCcCCCchhhH-HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHH
Confidence 5321 234579999999999877 678999999 99999999999998765432211100
Q ss_pred --------------------------HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 001988 939 --------------------------EQCLLSIFSLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 939 --------------------------~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
...++.+.+++.+|+..||.+|||+.|+++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~h 312 (367)
T 2fst_X 256 KISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAH 312 (367)
T ss_dssp TCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred HhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcC
Confidence 0124568899999999999999999999863
No 267
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.3e-32 Score=304.59 Aligned_cols=288 Identities=23% Similarity=0.274 Sum_probs=177.3
Q ss_pred CceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEEEecCCcCcccCcccccCCCCCCEEEcc
Q 001988 195 QLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGFNNLTGVVPATIFNMSTLKEIFLY 274 (985)
Q Consensus 195 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 274 (985)
+|+.+++++|.++ .+|..+. ++|+.|++++|++++..|..|+++++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4555666666555 4555443 455666666666665555556666666666666666666556666666666666666
Q ss_pred CCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccEEEccCcccc--cccCCcccCCCCCceEeccCCccc
Q 001988 275 NNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMGSNSFS--GFIPSAIGNLRNLKLFDIFFNNLT 352 (985)
Q Consensus 275 ~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~ 352 (985)
+|+++ .+|..++ ++|++|++++|++++..+..+.++++|+.|++++|.++ +..|..+..+ +|++|++++|+++
T Consensus 111 ~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 111 KNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp SSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 66665 4554432 56666666666666555555666777777777777764 2555566665 6666666666665
Q ss_pred CCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhcccceeccccccccccCCcCCCCCCccEEEccCCCCCCC
Q 001988 353 SSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGS 432 (985)
Q Consensus 353 ~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 432 (985)
.++.. +. .+|++|++++|.+++..+..|..+++|++|+|++|++++.
T Consensus 186 ~l~~~------------------------------~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 186 GIPKD------------------------------LP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp SCCSS------------------------------SC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred ccCcc------------------------------cc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC
Confidence 54332 11 1455555555555555556666666666667766666666
Q ss_pred CCccccccccccceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCcCc------CcCceEeeccceee--ee
Q 001988 433 IPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNL------TSLQYLNLGSNRFT--FV 504 (985)
Q Consensus 433 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l------~~L~~L~L~~N~l~--~~ 504 (985)
.+.+|..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+|++..+..|... ..|+.|++++|.+. .+
T Consensus 233 ~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~ 311 (332)
T 2ft3_A 233 ENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311 (332)
T ss_dssp CTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGS
T ss_pred ChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccccc
Confidence 6666666667777777777766 556666666777777777777766555555442 45677777777766 45
Q ss_pred cCCCccCccceeEEeecCCc
Q 001988 505 IPSTFWNLKDILSFDISSNL 524 (985)
Q Consensus 505 ~p~~~~~l~~L~~L~ls~N~ 524 (985)
.|..|..+++|+.+++++|+
T Consensus 312 ~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 312 QPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CGGGGTTBCCSTTEEC----
T ss_pred Ccccccccchhhhhhccccc
Confidence 66667777777777777664
No 268
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=7.3e-36 Score=349.16 Aligned_cols=361 Identities=19% Similarity=0.150 Sum_probs=185.6
Q ss_pred CCceEEEcccccCCCccccc-cccccccceEeeccccccC----CchhhhcCCCCCCEEEecCCcCcccCcccccCCCCC
Q 001988 194 KQLQELHLGYNNLSGAIPKE-IGNLTVLQRISLINNKLHG----EIPQEIGYLQNLDVLQLGFNNLTGVVPATIFNMSTL 268 (985)
Q Consensus 194 ~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 268 (985)
++|++|+|++|+++...... +..+++|++|++++|++++ .++..+..+++|++|+|++|.+++..+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~--------- 73 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV--------- 73 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH---------
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHH---------
Confidence 45666666666665433222 4555666666666666553 234445555555555555555554333
Q ss_pred CEEEccCCcCcccCChhhhhcCC----CCcEEEecCccCCC----cCCccccCCCCccEEEccCcccccccCCccc----
Q 001988 269 KEIFLYNNSLSGSLPSRIDLALP----NLEFLNLGINSFSG----TIPSSITNASKLILLEMGSNSFSGFIPSAIG---- 336 (985)
Q Consensus 269 ~~L~L~~N~l~~~~p~~~~~~l~----~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~---- 336 (985)
..+...++ +|++|+|++|+++. .++..+..+++|++|++++|.+++..+..+.
T Consensus 74 ---------------~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 138 (461)
T 1z7x_W 74 ---------------HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL 138 (461)
T ss_dssp ---------------HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred ---------------HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence 22222233 35555555555542 3355555666666666666666543333222
Q ss_pred -CCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhcccceeccccccccccCCcCCC
Q 001988 337 -NLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGN 415 (985)
Q Consensus 337 -~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~ 415 (985)
..++|++|++++|+++..... .+...+..+++|++|++++|.+....+..+..... ..
T Consensus 139 ~~~~~L~~L~L~~n~l~~~~~~-~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~--------------------~~ 197 (461)
T 1z7x_W 139 DPQCRLEKLQLEYCSLSAASCE-PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLK--------------------DS 197 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHH-HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHH--------------------HS
T ss_pred cCCCcceEEECCCCCCCHHHHH-HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHh--------------------cC
Confidence 244566666666665543211 12233455667777777777665432222211000 01
Q ss_pred CCCccEEEccCCCCCCC----CCccccccccccceecccccccCCchh-----hhhhccCCCeEEccCCccccc----cC
Q 001988 416 LSNLIVLSLGGNNLSGS----IPVTFGGLQKLQGLDLAFNKLAGSIPD-----EICLLSRLNELDLNGNKISGS----IS 482 (985)
Q Consensus 416 l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~-----~~~~l~~L~~L~L~~N~l~~~----~~ 482 (985)
.++|++|++++|.+++. ++..+..+++|++|++++|.+.+.... .+..+++|++|++++|++++. ++
T Consensus 198 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 277 (461)
T 1z7x_W 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277 (461)
T ss_dssp CCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred CCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence 23445555555554432 233444445555555555554432111 111244555555555555432 33
Q ss_pred CCCcCcCcCceEeeccceeeeecCCCccC-----ccceeEEeecCCcccCC----ccccccCCCcccEEEccCCccCccC
Q 001988 483 SCLGNLTSLQYLNLGSNRFTFVIPSTFWN-----LKDILSFDISSNLLDGP----ISLAIGNLKAVVGIDLSRNNLSGNI 553 (985)
Q Consensus 483 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-----l~~L~~L~ls~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~ 553 (985)
..+..+++|++|++++|.++...+..+.. .++|++|++++|.+++. .+..+..+++|+.|+|++|++++..
T Consensus 278 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 357 (461)
T 1z7x_W 278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 357 (461)
T ss_dssp HHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH
T ss_pred HHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccccc
Confidence 34444555555555555554332222221 23555555555555543 2334555667777777777766554
Q ss_pred chhhcc-----cccceeeeeecceecc----chhhhhhcccccCeEecCCCcccC
Q 001988 554 PTTLEG-----LKSLQNISLAYNRLEG----PIPESFGNMTSLESLDLSNNKISG 599 (985)
Q Consensus 554 p~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~ 599 (985)
+..+.. .++|++|+|++|++++ .+|..+..+++|++|||++|++++
T Consensus 358 ~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 358 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 544443 4577777777777775 567777777777777777777764
No 269
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=4.5e-33 Score=315.10 Aligned_cols=232 Identities=22% Similarity=0.288 Sum_probs=192.1
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcc--hHHHHHHHHHHHHhcCCCCeeeEEeeeecCCce----
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCAS--TLKSFEAECEVIKNIRHRNLVKIISSCSNDDFK---- 797 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~--~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~---- 797 (985)
.++|...+.||+|+||.||+|... +|+.||||++...... ..+.+.+|+.++++++||||+++++++...+..
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 467889999999999999999865 7899999999765332 356788999999999999999999999877654
Q ss_pred --EEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCcee
Q 001988 798 --ALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKL 875 (985)
Q Consensus 798 --~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~ 875 (985)
++||||++ ++|.+.+.. .+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++.
T Consensus 121 ~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~aL~~L---H~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~ 193 (371)
T 4exu_A 121 DFYLVMPFMQ-TDLQKIMGM---EFSEEKIQYLVYQMLKGLKYI---HSAGVVHRDLKPGNLAVNEDCELKILDFGLARH 193 (371)
T ss_dssp CCEEEEECCC-EEHHHHTTS---CCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCCGGGEEECTTCCEEECSTTCC--
T ss_pred eEEEEEcccc-ccHHHHhhc---CCCHHHHHHHHHHHHHHHHHH---HHCCCcCCCcCHHHeEECCCCCEEEEecCcccc
Confidence 99999996 688887753 489999999999999999999 788999999999999999999999999999986
Q ss_pred ccCCCCcceeccccccccccccccccc-CccchhhhcccccccchhhhcccccccCcchhhhh-----------------
Q 001988 876 LSGEDESTMRTQTLATIGYMAPDEIFV-GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA----------------- 937 (985)
Q Consensus 876 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~----------------- 937 (985)
.... .....||+.|+|||.+.+ ..++.++|+ |++|+++++++++..++........
T Consensus 194 ~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~Di-wslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~ 267 (371)
T 4exu_A 194 ADAE-----MTGYVVTRWYRAPEVILSWMHYNQTVDI-WSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQ 267 (371)
T ss_dssp -----------CTTCCCTTSCHHHHSCCSCCCTTHHH-HHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHT
T ss_pred cccC-----cCCcccCccccCHHHhcCCCCCCcHHhH-HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHHH
Confidence 5322 234568999999999887 788999999 9999999999998876643321110
Q ss_pred -------------------------HHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 001988 938 -------------------------KEQCLLSIFSLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 938 -------------------------~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
...+++++.+++.+|+..||.+||++.|+++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 324 (371)
T 4exu_A 268 KLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH 324 (371)
T ss_dssp TCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred HhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcC
Confidence 01235778999999999999999999999864
No 270
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=4.1e-33 Score=313.68 Aligned_cols=237 Identities=22% Similarity=0.284 Sum_probs=194.8
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc-chHHHHHHHHHHHHhcCCCCeeeEEeeeecC-----Cce
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA-STLKSFEAECEVIKNIRHRNLVKIISSCSND-----DFK 797 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l~h~niv~l~~~~~~~-----~~~ 797 (985)
.++|...+.||+|+||.||+|+.. +|+.||||++..... .....+.+|++++++++||||+++++++... ...
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 89 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV 89 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence 468999999999999999999975 789999999975432 2356788999999999999999999988654 678
Q ss_pred EEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceecc
Q 001988 798 ALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLS 877 (985)
Q Consensus 798 ~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~ 877 (985)
++||||++ |+|.+++... .+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++.+.
T Consensus 90 ~lv~e~~~-~~L~~~~~~~--~~~~~~~~~~~~qi~~~L~~L---H~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~ 163 (353)
T 2b9h_A 90 YIIQELMQ-TDLHRVISTQ--MLSDDHIQYFIYQTLRAVKVL---HGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIID 163 (353)
T ss_dssp EEEECCCS-EEHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred EEEEeccC-ccHHHHHhhc--CCCHHHHHHHHHHHHHHHHHH---HHCCeecCCCCHHHeEEcCCCcEEEEecccccccc
Confidence 99999996 6999998764 589999999999999999999 78899999999999999999999999999998865
Q ss_pred CCCCcc--------eeccccccccccccccccc-CccchhhhcccccccchhhhcccccccCcchhhh------------
Q 001988 878 GEDEST--------MRTQTLATIGYMAPDEIFV-GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA------------ 936 (985)
Q Consensus 878 ~~~~~~--------~~~~~~gt~~y~aPE~~~~-~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~------------ 936 (985)
...... .....+||+.|+|||.+.. ..++.++|+ |++|+++++++++..+........
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di-~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~ 242 (353)
T 2b9h_A 164 ESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDV-WSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTP 242 (353)
T ss_dssp ----------------CCCCCCGGGCCHHHHHSCCCCCHHHHH-HHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCC
T ss_pred cccccccCccccccchhhccccccccCCeeeccCCCccchhhH-HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCC
Confidence 322111 1223468999999998765 778999999 999999999999886554321100
Q ss_pred -------------------------------hHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 937 -------------------------------AKEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 937 -------------------------------~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
....++.++.+++.+||..||++||++.|+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (353)
T 2b9h_A 243 HSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE 305 (353)
T ss_dssp CSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred chhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 00134567889999999999999999999986
No 271
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=7e-33 Score=309.75 Aligned_cols=234 Identities=19% Similarity=0.268 Sum_probs=196.9
Q ss_pred hcCccCCceeeccCceeEEEEEE-c-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCC------CeeeEEeeeecCCc
Q 001988 725 TDNFAENNIIGIGGFGSVYRARL-E-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHR------NLVKIISSCSNDDF 796 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~-~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~------niv~l~~~~~~~~~ 796 (985)
.++|+..+.||+|+||.||+|.. . +++.||||+++.. ....+.+.+|++++++++|+ +++++++++...+.
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~ 91 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGH 91 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTE
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCc
Confidence 46899999999999999999986 3 6889999999754 33456788999999998765 49999999999999
Q ss_pred eEEEEeccCCCChHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcC--------------
Q 001988 797 KALVLEYMSNGSLEDCLHSSN-CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDE-------------- 861 (985)
Q Consensus 797 ~~lv~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~-------------- 861 (985)
.++||||+ +++|.+++...+ ..+++..+..++.|++.||+|| |++||+||||||+||+++.
T Consensus 92 ~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~l---H~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~ 167 (339)
T 1z57_A 92 ICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFL---HSNKLTHTDLKPENILFVQSDYTEAYNPKIKRD 167 (339)
T ss_dssp EEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCCGGGEEESCCCEEEEEC----CE
T ss_pred EEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHH---HHCCCcCCCCCHHHEEEeccccccccCCccccc
Confidence 99999999 889999998764 3688999999999999999999 7889999999999999987
Q ss_pred -----CCcEEEecccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh
Q 001988 862 -----DMVAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA 936 (985)
Q Consensus 862 -----~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~ 936 (985)
++.+||+|||+++..... .....||+.|+|||.+.+..++.++|+ |++|+++++++++..+........
T Consensus 168 ~~~~~~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di-~slG~il~el~~g~~pf~~~~~~~ 241 (339)
T 1z57_A 168 ERTLINPDIKVVDFGSATYDDEH-----HSTLVSTRHYRAPEVILALGWSQPCDV-WSIGCILIEYYLGFTVFPTHDSKE 241 (339)
T ss_dssp EEEESCCCEEECCCSSCEETTSC-----CCSSCSCGGGCCHHHHTTSCCCTHHHH-HHHHHHHHHHHHSSCSCCCSCHHH
T ss_pred cccccCCCceEeeCcccccCccc-----cccccCCccccChHHhhCCCCCcchhh-HHHHHHHHHHHhCCCCCCCCChHH
Confidence 678999999999875322 233569999999999999999999999 999999999999876554321110
Q ss_pred h-------------------------------------------------------HHHHHHHHHHHHHHccCCCCCCCC
Q 001988 937 A-------------------------------------------------------KEQCLLSIFSLALECTMESPEKRI 961 (985)
Q Consensus 937 ~-------------------------------------------------------~~~~~~~l~~l~~~cl~~~P~~RP 961 (985)
. ...+++++.+++.+||..||.+||
T Consensus 242 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rp 321 (339)
T 1z57_A 242 HLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRI 321 (339)
T ss_dssp HHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSC
T ss_pred HHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCccccc
Confidence 0 112357789999999999999999
Q ss_pred CHHHHHHH
Q 001988 962 DAKDTITR 969 (985)
Q Consensus 962 t~~ev~~~ 969 (985)
++.|+++.
T Consensus 322 t~~ell~h 329 (339)
T 1z57_A 322 TLREALKH 329 (339)
T ss_dssp CHHHHTTS
T ss_pred CHHHHhcC
Confidence 99999853
No 272
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=2e-33 Score=314.43 Aligned_cols=237 Identities=21% Similarity=0.293 Sum_probs=195.5
Q ss_pred HhcCccCCceeeccCceeEEEEEE-cCCcEEEEEEeccCCc-chHHHHHHHHHH-HHhcCCCCeeeEEeeeecCCceEEE
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARL-EDGVEIAIKVFHPQCA-STLKSFEAECEV-IKNIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vAvK~~~~~~~-~~~~~~~~E~~i-l~~l~h~niv~l~~~~~~~~~~~lv 800 (985)
..++|...+.||+|+||.||+|+. .+|+.||||+++.... ....++..|..+ ++.++||||+++++++.+.+..++|
T Consensus 49 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~lv 128 (340)
T 3an0_A 49 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWIC 128 (340)
T ss_dssp CSSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEEE
T ss_pred ehhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEEE
Confidence 346788899999999999999996 4799999999976533 234556666666 6778999999999999999999999
Q ss_pred EeccCCCChHHHhhc---CCCCCCHHHHHHHHHHHHHHHHHHHhcCCC-CeEeCCCCCCCEEEcCCCcEEEecccCceec
Q 001988 801 LEYMSNGSLEDCLHS---SNCALNIFCRLNIMIDIASALEYLHFGHST-PIIHCDLKPSNVLLDEDMVAHLSDFGMAKLL 876 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~---~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~-~ivHrDlk~~Nill~~~~~~kl~DfGla~~~ 876 (985)
|||+++ +|.+++.. ....+++..+..++.|++.||+|| |++ ||+||||||+||+++.++.+||+|||+++.+
T Consensus 129 ~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~~l~~l---H~~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~ 204 (340)
T 3an0_A 129 MELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHL---HSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYL 204 (340)
T ss_dssp ECCCSE-EHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHH---HHHTCCCCCSCCSTTEEECSTTCEEECCCSHHHHH
T ss_pred HHHhhC-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH---hhcCCeecCCCCHHHEEECCCCCEEEeeCCCceec
Confidence 999975 99888764 355789999999999999999999 665 9999999999999999999999999999876
Q ss_pred cCCCCcceecccccccccccccccc----cCccchhhhcccccccchhhhcccccccCcchh-hh-------------hH
Q 001988 877 SGEDESTMRTQTLATIGYMAPDEIF----VGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKH-FA-------------AK 938 (985)
Q Consensus 877 ~~~~~~~~~~~~~gt~~y~aPE~~~----~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~-~~-------------~~ 938 (985)
.. ........||+.|+|||.+. ...++.++|+ |++|+++++++++..++..... .. ..
T Consensus 205 ~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di-~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 280 (340)
T 3an0_A 205 VD---SVAKTIDAGCKPYMAPERINPELNQKGYSVKSDI-WSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPSPQLPA 280 (340)
T ss_dssp SC---HHHHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHH-HHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCCCCCCG
T ss_pred cc---ccccccCCCCccccCccccccccccCCCCchhhH-HHHHHHHHHHHHCCCCCccccchHHHHHHHhcCCCCCCCc
Confidence 42 12223346999999999864 4478999999 9999999999999876543211 00 11
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 939 EQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 939 ~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
..++.++.+++.+||..||++||++.|+++
T Consensus 281 ~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 310 (340)
T 3an0_A 281 DKFSAEFVDFTSQCLKKNSKERPTYPELMQ 310 (340)
T ss_dssp GGSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred ccCCHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 235678999999999999999999999987
No 273
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=8.1e-33 Score=312.18 Aligned_cols=244 Identities=21% Similarity=0.268 Sum_probs=186.3
Q ss_pred HHHHHHhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCc-
Q 001988 719 FELLRATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDF- 796 (985)
Q Consensus 719 ~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~- 796 (985)
.+.....++|...+.||+|+||.||+|+.. +++.||||++.... .......+|++.++.++||||+++++++...+.
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~ 94 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER 94 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence 455667789999999999999999999975 78999999986542 233456778888899999999999999965433
Q ss_pred ------eEEEEeccCCCChHHHhhc---CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcC-CCcEE
Q 001988 797 ------KALVLEYMSNGSLEDCLHS---SNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDE-DMVAH 866 (985)
Q Consensus 797 ------~~lv~e~~~~gsL~~~l~~---~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~-~~~~k 866 (985)
.++||||+++ ++.+.+.. ....+++..+..++.|++.||.|||. |++||+||||||+||+++. ++.+|
T Consensus 95 ~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~-~~~~ivH~Dlkp~NIll~~~~~~~k 172 (360)
T 3e3p_A 95 DRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHL-PSVNVCHRDIKPHNVLVNEADGTLK 172 (360)
T ss_dssp CTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTS-TTTCCBCSCCCGGGEEEETTTTEEE
T ss_pred cccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhC-CCCCeecCcCCHHHEEEeCCCCcEE
Confidence 7899999976 55544432 34568899999999999999999942 3999999999999999997 89999
Q ss_pred EecccCceeccCCCCcceecccccccccccccccccCc-cchhhhcccccccchhhhcccccccCcchhhhhHH------
Q 001988 867 LSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGE-LSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAAKE------ 939 (985)
Q Consensus 867 l~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~~~------ 939 (985)
|+|||+++.+..... .....||+.|+|||.+.+.. ++.++|+ |++|+++++++++..++..........
T Consensus 173 l~Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~Di-~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~ 248 (360)
T 3e3p_A 173 LCDFGSAKKLSPSEP---NVAYICSRYYRAPELIFGNQHYTTAVDI-WSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVL 248 (360)
T ss_dssp ECCCTTCBCCCTTSC---CCSTTSCGGGCCHHHHTTCSSCCTHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHH
T ss_pred EeeCCCceecCCCCC---cccccCCcceeCHHHHcCCCCCCcHHHH-HHHHHHHHHHHhCCCCcCCCChHHHHHHHHHHc
Confidence 999999987653322 23456899999999987654 8999999 999999999999987654432111110
Q ss_pred -------------------------------------HHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 001988 940 -------------------------------------QCLLSIFSLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 940 -------------------------------------~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
.+++++.+++.+||..||.+||++.|+++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h 315 (360)
T 3e3p_A 249 GCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCH 315 (360)
T ss_dssp CCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred CCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcC
Confidence 035679999999999999999999999863
No 274
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=2.7e-33 Score=320.61 Aligned_cols=233 Identities=20% Similarity=0.257 Sum_probs=194.3
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcC--------CCCeeeEEeeee---
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIR--------HRNLVKIISSCS--- 792 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~--------h~niv~l~~~~~--- 792 (985)
.++|...+.||+|+||.||+|+.. +++.||||+++.. ....+.+.+|++++++++ |+||+++++++.
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~ 114 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG 114 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence 467999999999999999999864 7889999999754 334567889999999985 788999999987
Q ss_pred -cCCceEEEEeccCCCChHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhcCCC-CeEeCCCCCCCEEEcCCC------
Q 001988 793 -NDDFKALVLEYMSNGSLEDCLHSS-NCALNIFCRLNIMIDIASALEYLHFGHST-PIIHCDLKPSNVLLDEDM------ 863 (985)
Q Consensus 793 -~~~~~~lv~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~-~ivHrDlk~~Nill~~~~------ 863 (985)
.....++||||+ ++++.+++... ...+++..+..++.||+.||+|| |++ ||+||||||+|||++.++
T Consensus 115 ~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~l---H~~~givHrDikp~NIll~~~~~~~~~~ 190 (397)
T 1wak_A 115 VNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYL---HTKCRIIHTDIKPENILLSVNEQYIRRL 190 (397)
T ss_dssp TTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHH---HHTTCEECCCCSGGGEEECCCHHHHHHH
T ss_pred CCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHH---HHhCCEecCCCCHHHeeEeccchhhhhh
Confidence 556789999999 56676666544 35689999999999999999999 677 999999999999999775
Q ss_pred -------------------------------------------cEEEecccCceeccCCCCcceeccccccccccccccc
Q 001988 864 -------------------------------------------VAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEI 900 (985)
Q Consensus 864 -------------------------------------------~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~ 900 (985)
.+||+|||+++..... ....+||+.|+|||.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~-----~~~~~gt~~y~aPE~~ 265 (397)
T 1wak_A 191 AAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH-----FTEDIQTRQYRSLEVL 265 (397)
T ss_dssp HHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC-----SCSCCSCGGGCCHHHH
T ss_pred hhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc-----CccCCCCCcccCChhh
Confidence 7999999999876422 2334699999999999
Q ss_pred ccCccchhhhcccccccchhhhcccccccCcchhh---------------------------------------------
Q 001988 901 FVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF--------------------------------------------- 935 (985)
Q Consensus 901 ~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~--------------------------------------------- 935 (985)
.+..++.++|+ |++|+++++++++..++......
T Consensus 266 ~~~~~~~~~Di-wslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (397)
T 1wak_A 266 IGSGYNTPADI-WSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITK 344 (397)
T ss_dssp HTSCCCTHHHH-HHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCC
T ss_pred cCCCCCcHHHH-HHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccc
Confidence 99999999999 99999999999998765421100
Q ss_pred --------------hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 936 --------------AAKEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 936 --------------~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
..+...+..+.+++.+||..||++|||+.|+++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 391 (397)
T 1wak_A 345 LKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR 391 (397)
T ss_dssp CCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred cCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence 012345677899999999999999999999985
No 275
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=4.2e-33 Score=317.67 Aligned_cols=234 Identities=24% Similarity=0.342 Sum_probs=188.7
Q ss_pred hcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecCC------ceE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSNDD------FKA 798 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~------~~~ 798 (985)
..+|...+.||+|+||.||+|+..++..||+|++..... ...+|++++++++||||+++++++...+ ..+
T Consensus 39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~ 114 (394)
T 4e7w_A 39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN 114 (394)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEE
T ss_pred cceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEE
Confidence 357889999999999999999988777899998865422 2247999999999999999999985433 378
Q ss_pred EEEeccCCCChHHHhh--cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEc-CCCcEEEecccCcee
Q 001988 799 LVLEYMSNGSLEDCLH--SSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLD-EDMVAHLSDFGMAKL 875 (985)
Q Consensus 799 lv~e~~~~gsL~~~l~--~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~-~~~~~kl~DfGla~~ 875 (985)
+||||++++.+..... .....+++..+..++.|+++||+|| |++||+||||||+||+++ .++.+||+|||+|+.
T Consensus 115 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~L---H~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~ 191 (394)
T 4e7w_A 115 LVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYI---HSIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKI 191 (394)
T ss_dssp EEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred EEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHH---HHCCccCCCCCHHHEEEcCCCCcEEEeeCCCccc
Confidence 9999998754333322 2245789999999999999999999 789999999999999999 899999999999988
Q ss_pred ccCCCCcceecccccccccccccccccC-ccchhhhcccccccchhhhcccccccCcchhhhhH----------------
Q 001988 876 LSGEDESTMRTQTLATIGYMAPDEIFVG-ELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAAK---------------- 938 (985)
Q Consensus 876 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~~---------------- 938 (985)
+..... .....||+.|+|||.+.+. .++.++|+ |++|+++++++++..++.........
T Consensus 192 ~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~Di-wSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~ 267 (394)
T 4e7w_A 192 LIAGEP---NVSYICSRYYRAPELIFGATNYTTNIDI-WSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIK 267 (394)
T ss_dssp CCTTCC---CCSSCSCGGGCCHHHHTTCSSCCTHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHH
T ss_pred ccCCCC---CcccccCcCccCHHHHcCCCCCCcHHHH-HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHH
Confidence 643322 2345689999999998764 58999999 99999999999998766543211110
Q ss_pred ------------------------HHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 001988 939 ------------------------EQCLLSIFSLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 939 ------------------------~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
...++++.+++.+||..||.+||++.|+++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 322 (394)
T 4e7w_A 268 TMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCH 322 (394)
T ss_dssp HHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTS
T ss_pred hhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcC
Confidence 1145679999999999999999999999863
No 276
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=8.2e-33 Score=307.53 Aligned_cols=237 Identities=24% Similarity=0.345 Sum_probs=196.2
Q ss_pred HhcCccCCceeeccCceeEEEEEE--cCCcEEEEEEeccCCcc--hHHHHHHHHHHHHhc---CCCCeeeEEeeee----
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARL--EDGVEIAIKVFHPQCAS--TLKSFEAECEVIKNI---RHRNLVKIISSCS---- 792 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~--~~~~~vAvK~~~~~~~~--~~~~~~~E~~il~~l---~h~niv~l~~~~~---- 792 (985)
+.++|...+.||+|+||.||+|+. .+++.||+|+++..... ....+.+|+.+++++ +||||+++++++.
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~ 88 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT 88 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence 567899999999999999999997 46889999998754221 234567888888776 8999999999987
Q ss_pred -cCCceEEEEeccCCCChHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecc
Q 001988 793 -NDDFKALVLEYMSNGSLEDCLHSSN-CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDF 870 (985)
Q Consensus 793 -~~~~~~lv~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~Df 870 (985)
.....++||||++ |+|.+++.... ..+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+||
T Consensus 89 ~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~l---H~~gi~H~dlkp~Nili~~~~~~kl~Df 164 (326)
T 1blx_A 89 DRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFL---HSHRVVHRDLKPQNILVTSSGQIKLADF 164 (326)
T ss_dssp SSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHH---HHTTCCCCCCCGGGEEECTTCCEEECSC
T ss_pred CCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHH---HHCCceeccCCHHHeEEcCCCCEEEecC
Confidence 4567899999997 69999998653 3589999999999999999999 7889999999999999999999999999
Q ss_pred cCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhhh-------------
Q 001988 871 GMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA------------- 937 (985)
Q Consensus 871 Gla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~------------- 937 (985)
|+++.... ........||+.|+|||.+.+..++.++|+ |++|+++++++++..++........
T Consensus 165 g~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di-~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~ 240 (326)
T 1blx_A 165 GLARIYSF---QMALTSVVVTLWYRAPEVLLQSSYATPVDL-WSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGE 240 (326)
T ss_dssp CSCCCCCG---GGGGCCCCCCCTTCCHHHHTTCCCCTHHHH-HHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCG
T ss_pred cccccccC---CCCccccccccceeCHHHHhcCCCCcchhH-HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCc
Confidence 99987532 122334568999999999999999999999 9999999999998876543221110
Q ss_pred -------------------------HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 938 -------------------------KEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 938 -------------------------~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
...++..+.+++.+||..||.+||++.|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 296 (326)
T 1blx_A 241 EDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 296 (326)
T ss_dssp GGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 0124567889999999999999999999985
No 277
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=7.2e-33 Score=318.33 Aligned_cols=232 Identities=24% Similarity=0.338 Sum_probs=187.8
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeeecC------Cce
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCSND------DFK 797 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~------~~~ 797 (985)
..+|...+.||+|+||.||+|++. +++.||||++.... ....+|++++++++||||+++++++... .+.
T Consensus 53 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~ 128 (420)
T 1j1b_A 53 EVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYL 128 (420)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEE
T ss_pred cceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc----hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeE
Confidence 346888999999999999999975 68999999986542 2234799999999999999999988532 236
Q ss_pred EEEEeccCCCChHHHhhc---CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCC-CcEEEecccCc
Q 001988 798 ALVLEYMSNGSLEDCLHS---SNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDED-MVAHLSDFGMA 873 (985)
Q Consensus 798 ~lv~e~~~~gsL~~~l~~---~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~-~~~kl~DfGla 873 (985)
++||||+++ ++.+.+.. ....+++..+..++.||++||+|| |++||+||||||+|||++.+ +.+||+|||++
T Consensus 129 ~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~L---H~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a 204 (420)
T 1j1b_A 129 NLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYI---HSFGICHRDIKPQNLLLDPDTAVLKLCDFGSA 204 (420)
T ss_dssp EEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH---HTTTEECSCCSGGGEEEETTTTEEEECCCTTC
T ss_pred Eeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH---HHCCccccCCChhhEEEeCCCCeEEeccchhh
Confidence 799999975 66665542 345789999999999999999999 78999999999999999965 67899999999
Q ss_pred eeccCCCCcceecccccccccccccccccC-ccchhhhcccccccchhhhcccccccCcchhhhhH--------------
Q 001988 874 KLLSGEDESTMRTQTLATIGYMAPDEIFVG-ELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAAK-------------- 938 (985)
Q Consensus 874 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~~-------------- 938 (985)
+.+..... ....+||+.|+|||++.+. .++.++|+ |++|++++++++|+.++.........
T Consensus 205 ~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~Di-wSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~ 280 (420)
T 1j1b_A 205 KQLVRGEP---NVSYICSRYYRAPELIFGATDYTSSIDV-WSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQ 280 (420)
T ss_dssp EECCTTCC---CCSCCSCTTSCCHHHHTTCSSCCTHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHH
T ss_pred hhcccCCC---ceeeeeCCCcCCHHHHcCCCCCCchhhh-HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHH
Confidence 98643222 2345689999999998764 78999999 99999999999998765433211100
Q ss_pred --------------------------HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 939 --------------------------EQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 939 --------------------------~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
...+.++.+++.+||..||.+||++.|+++
T Consensus 281 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~ 336 (420)
T 1j1b_A 281 IREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA 336 (420)
T ss_dssp HHHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence 112467899999999999999999999985
No 278
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=8.4e-33 Score=301.50 Aligned_cols=237 Identities=21% Similarity=0.275 Sum_probs=199.8
Q ss_pred HHhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC--cchHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEE
Q 001988 723 RATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC--ASTLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKAL 799 (985)
Q Consensus 723 ~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~--~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~l 799 (985)
...++|+..+.||+|+||.||+|+.. +++.||+|++.... ......+.+|++++++++||||+++++++.+.+..++
T Consensus 19 ~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 98 (287)
T 2wei_A 19 TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYI 98 (287)
T ss_dssp HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred HHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEE
Confidence 34578999999999999999999976 78999999987542 2345778999999999999999999999999999999
Q ss_pred EEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCC---CcEEEecccCceec
Q 001988 800 VLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDED---MVAHLSDFGMAKLL 876 (985)
Q Consensus 800 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~---~~~kl~DfGla~~~ 876 (985)
||||+++++|.+++.... .+++..+..++.|++.||+|| |++||+||||||+||+++.+ +.+||+|||+++..
T Consensus 99 v~e~~~~~~L~~~l~~~~-~~~~~~~~~i~~qi~~~l~~L---H~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~ 174 (287)
T 2wei_A 99 VGELYTGGELFDEIIKRK-RFSEHDAARIIKQVFSGITYM---HKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCF 174 (287)
T ss_dssp EECCCCSCBHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHH---HHTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTB
T ss_pred EEEccCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HHCCeeccCCChhhEEEecCCCcccEEEeccCcceee
Confidence 999999999999887654 689999999999999999999 78899999999999999754 47999999999876
Q ss_pred cCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh---------------hhHHHH
Q 001988 877 SGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF---------------AAKEQC 941 (985)
Q Consensus 877 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~---------------~~~~~~ 941 (985)
..... .....||+.|+|||.+.+ .++.++|+ |++|+++++++++..+....... +....+
T Consensus 175 ~~~~~---~~~~~~~~~y~aPE~~~~-~~~~~~Di-~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (287)
T 2wei_A 175 QQNTK---MKDRIGTAYYIAPEVLRG-TYDEKCDV-WSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTI 249 (287)
T ss_dssp CCCSS---CSCHHHHHTTCCHHHHTT-CCCTHHHH-HHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSGGGTTS
T ss_pred cCCCc---cccccCcccccChHHhcC-CCCCchhh-HhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCchhhhhc
Confidence 43222 223458999999998754 58899999 99999999999988765432211 111235
Q ss_pred HHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 942 LLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 942 ~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
++++.+++.+|+..||.+||++.|+++
T Consensus 250 ~~~~~~li~~~l~~dp~~Rps~~ell~ 276 (287)
T 2wei_A 250 SDDAKDLIRKMLTFHPSLRITATQCLE 276 (287)
T ss_dssp CHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred CHHHHHHHHHHcccChhhCcCHHHHhc
Confidence 678999999999999999999999987
No 279
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=7.5e-32 Score=300.42 Aligned_cols=295 Identities=22% Similarity=0.298 Sum_probs=184.7
Q ss_pred cccceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEEEe
Q 001988 170 RYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQL 249 (985)
Q Consensus 170 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 249 (985)
.+|+.++++++.++ .+|..+. ++|++|+|++|++++..|..|+++++|++|++++|++++..|..|+++++|++|++
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 36777777777776 6776664 57788888888887666677888888888888888887777777888888888888
Q ss_pred cCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCC--CcCCccccCCCCccEEEccCccc
Q 001988 250 GFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFS--GTIPSSITNASKLILLEMGSNSF 327 (985)
Q Consensus 250 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~N~l 327 (985)
++|+++ .+|..+. ++|++|++++|+++ .+|...+..+++|+.|++++|.++ +..+..+..+ +|+.|++++|++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 888877 4555554 67888888888887 566555667888888888888875 3567777777 888888888888
Q ss_pred ccccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhcccceecccccccc
Q 001988 328 SGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISG 407 (985)
Q Consensus 328 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~ 407 (985)
++ +|..+. ++|++|++++|+++...+. .+.++++|++|++++|++.+..+..+..++ +|++|++++|+++
T Consensus 185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~-----~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~- 254 (332)
T 2ft3_A 185 TG-IPKDLP--ETLNELHLDHNKIQAIELE-----DLLRYSKLYRLGLGHNQIRMIENGSLSFLP-TLRELHLDNNKLS- 254 (332)
T ss_dssp SS-CCSSSC--SSCSCCBCCSSCCCCCCTT-----SSTTCTTCSCCBCCSSCCCCCCTTGGGGCT-TCCEEECCSSCCC-
T ss_pred Cc-cCcccc--CCCCEEECCCCcCCccCHH-----HhcCCCCCCEEECCCCcCCcCChhHhhCCC-CCCEEECCCCcCe-
Confidence 85 444443 6777777777777765432 245555666666666655544444444443 4444444444444
Q ss_pred ccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCCccc--cccCCCC
Q 001988 408 NIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKIS--GSISSCL 485 (985)
Q Consensus 408 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~~~~~ 485 (985)
.+|..+..+++|++|++++|+|++..+..|....- -....+|+.|++++|.+. +..|..|
T Consensus 255 ~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~------------------~~~~~~l~~L~l~~N~~~~~~~~~~~~ 316 (332)
T 2ft3_A 255 RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF------------------GVKRAYYNGISLFNNPVPYWEVQPATF 316 (332)
T ss_dssp BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC------------------CSSSCCBSEEECCSSSSCGGGSCGGGG
T ss_pred ecChhhhcCccCCEEECCCCCCCccChhHcccccc------------------ccccccccceEeecCcccccccCcccc
Confidence 33444444444444444444444433333332100 000234555666666554 4445556
Q ss_pred cCcCcCceEeeccce
Q 001988 486 GNLTSLQYLNLGSNR 500 (985)
Q Consensus 486 ~~l~~L~~L~L~~N~ 500 (985)
..+++|+.+++++|+
T Consensus 317 ~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 317 RCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTBCCSTTEEC----
T ss_pred cccchhhhhhccccc
Confidence 666666666666553
No 280
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.98 E-value=4.9e-33 Score=318.90 Aligned_cols=237 Identities=20% Similarity=0.269 Sum_probs=177.9
Q ss_pred cCccC-CceeeccCceeEEEEEEc---CCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEeeee--cCCceEE
Q 001988 726 DNFAE-NNIIGIGGFGSVYRARLE---DGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISSCS--NDDFKAL 799 (985)
Q Consensus 726 ~~~~~-~~~ig~G~~g~V~~~~~~---~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~~~--~~~~~~l 799 (985)
+.|.. +++||+|+||.||+|+.. +++.||||++..... ...+.+|++++++++||||+++++++. .....++
T Consensus 20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~l 97 (405)
T 3rgf_A 20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI--SMSACREIALLRELKHPNVISLQKVFLSHADRKVWL 97 (405)
T ss_dssp HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC--CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEE
T ss_pred hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC--CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEE
Confidence 34555 568999999999999965 578899999975532 356889999999999999999999994 4678899
Q ss_pred EEeccCCCChHHHhhcC--------CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEE----cCCCcEEE
Q 001988 800 VLEYMSNGSLEDCLHSS--------NCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLL----DEDMVAHL 867 (985)
Q Consensus 800 v~e~~~~gsL~~~l~~~--------~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill----~~~~~~kl 867 (985)
||||++ |+|.+++... ...+++..++.++.||+.||+|| |++||+||||||+|||+ +.++.+||
T Consensus 98 v~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~L---H~~~ivH~Dlkp~NIll~~~~~~~~~~kl 173 (405)
T 3rgf_A 98 LFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYL---HANWVLHRDLKPANILVMGEGPERGRVKI 173 (405)
T ss_dssp EEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHH---HHTTCCCCCCCGGGEEECCSSTTTTCEEE
T ss_pred EEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHH---HhCCEeCCCcCHHHeEEecCCCCCCcEEE
Confidence 999996 5888877532 22489999999999999999999 78999999999999999 77899999
Q ss_pred ecccCceeccCCCC-cceeccccccccccccccccc-CccchhhhcccccccchhhhcccccccCcchhh---------h
Q 001988 868 SDFGMAKLLSGEDE-STMRTQTLATIGYMAPDEIFV-GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF---------A 936 (985)
Q Consensus 868 ~DfGla~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~-~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~---------~ 936 (985)
+|||+|+.+..... .......+||+.|+|||.+.+ ..++.++|+ |++|+++++++++..++...... .
T Consensus 174 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di-wSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~ 252 (405)
T 3rgf_A 174 ADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDI-WAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHD 252 (405)
T ss_dssp CCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHH-HHHHHHHHHHHHSSCTTCCCC------CCCCHH
T ss_pred EECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhh-HHHHHHHHHHHhCCCCCCCccccccccccchHH
Confidence 99999987653221 122344679999999999887 458999999 99999999999988765321100 0
Q ss_pred h------------------------HH-------------------------HHHHHHHHHHHHccCCCCCCCCCHHHHH
Q 001988 937 A------------------------KE-------------------------QCLLSIFSLALECTMESPEKRIDAKDTI 967 (985)
Q Consensus 937 ~------------------------~~-------------------------~~~~~l~~l~~~cl~~~P~~RPt~~ev~ 967 (985)
. .. ...+++.+++.+||..||.+|||+.|++
T Consensus 253 ~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L 332 (405)
T 3rgf_A 253 QLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAM 332 (405)
T ss_dssp HHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred HHHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHh
Confidence 0 00 0145678999999999999999999998
Q ss_pred HH
Q 001988 968 TR 969 (985)
Q Consensus 968 ~~ 969 (985)
+.
T Consensus 333 ~h 334 (405)
T 3rgf_A 333 QD 334 (405)
T ss_dssp TS
T ss_pred cC
Confidence 63
No 281
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=8.7e-32 Score=299.70 Aligned_cols=290 Identities=23% Similarity=0.259 Sum_probs=155.4
Q ss_pred cccceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEEEe
Q 001988 170 RYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQL 249 (985)
Q Consensus 170 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 249 (985)
.+++.++++++.++ .+|..+. ++|++|+|++|++++..+..|+++++|++|++++|++++..|..|+.+++|++|++
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 35666666666665 4555443 45566666666666544445555666666666666655555555555555555555
Q ss_pred cCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccEEEccCccccc
Q 001988 250 GFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMGSNSFSG 329 (985)
Q Consensus 250 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 329 (985)
++|+++ .+|..+. + +|++|++++|++++..+..+.++++|+.|++++|.+..
T Consensus 108 s~n~l~-~l~~~~~--~-------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 159 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--K-------------------------TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159 (330)
T ss_dssp CSSCCS-BCCSSCC--T-------------------------TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG
T ss_pred CCCcCC-ccChhhc--c-------------------------cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc
Confidence 555555 2333322 3 44444444444444444444555555555555555532
Q ss_pred --ccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhcccceecccccccc
Q 001988 330 --FIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISG 407 (985)
Q Consensus 330 --~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~ 407 (985)
..+..+.++++|++|++++|+++.++... .++ |++|++++|.+++
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~--------~~~-------------------------L~~L~l~~n~l~~ 206 (330)
T 1xku_A 160 SGIENGAFQGMKKLSYIRIADTNITTIPQGL--------PPS-------------------------LTELHLDGNKITK 206 (330)
T ss_dssp GGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--------CTT-------------------------CSEEECTTSCCCE
T ss_pred cCcChhhccCCCCcCEEECCCCccccCCccc--------ccc-------------------------CCEEECCCCcCCc
Confidence 44555556666666666666555433211 133 4444444444444
Q ss_pred ccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCcC
Q 001988 408 NIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGN 487 (985)
Q Consensus 408 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 487 (985)
..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|++|++++|+|++..+..|..
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~ 285 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence 44455555555566666666555555555555556666666666655 45555555566666666666665554444432
Q ss_pred ------cCcCceEeeccceeee--ecCCCccCccceeEEeecCCc
Q 001988 488 ------LTSLQYLNLGSNRFTF--VIPSTFWNLKDILSFDISSNL 524 (985)
Q Consensus 488 ------l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~ls~N~ 524 (985)
.+.|+.|++++|.+.. +.|..|..+.+++.+++++|+
T Consensus 286 ~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 2556666666666643 445566666666666666663
No 282
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=1.4e-35 Score=346.85 Aligned_cols=390 Identities=18% Similarity=0.135 Sum_probs=205.3
Q ss_pred ccceeeeccccccCCCChhHhhhccccceecccCccccc----cCCcccCCCCCceEEEcccccCCCccccccc-ccc--
Q 001988 146 SILDIRLSKNKLSGKLPENICNHLRYLKHLFLRENMFYG----KIPSSLSKCKQLQELHLGYNNLSGAIPKEIG-NLT-- 218 (985)
Q Consensus 146 ~L~~L~ls~n~l~g~lp~~~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~-- 218 (985)
+|++|||++|+++......++..+++|++|+|++|.+++ .+|..+..+++|++|+|++|.+++..+..+. .++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 344444444444433334445666777777777777663 3455666667777777777777654443332 233
Q ss_pred --ccceEeeccccccC----CchhhhcCCCCCCEEEecCCcCcccCccccc-----CCCCCCEEEccCCcCcccCChh--
Q 001988 219 --VLQRISLINNKLHG----EIPQEIGYLQNLDVLQLGFNNLTGVVPATIF-----NMSTLKEIFLYNNSLSGSLPSR-- 285 (985)
Q Consensus 219 --~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~L~~N~l~~~~p~~-- 285 (985)
+|++|+|++|+++. .+|..+..+++|++|+|++|.+++..+..+. ..++|++|+|++|++++..+..
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 47777777777663 4566666777777777777776654333332 2445666666666666432211
Q ss_pred -hhhcCCCCcEEEecCccCCCcCCcccc-----CCCCccEEEccCcccccc----cCCcccCCCCCceEeccCCcccCCC
Q 001988 286 -IDLALPNLEFLNLGINSFSGTIPSSIT-----NASKLILLEMGSNSFSGF----IPSAIGNLRNLKLFDIFFNNLTSST 355 (985)
Q Consensus 286 -~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~ 355 (985)
.+..+++|++|++++|.+++..+..+. ..++|+.|++++|.+++. ++..+..+++|++|++++|+++...
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 122356666666666665544333332 134556666666655542 3444455555555555555544321
Q ss_pred Ccccccc-cccccCcccEEEecCCCCCccCCCCccchhhcccceeccccccccccCCcCCCCCCccEEEccCCCCCCCCC
Q 001988 356 PELGFLS-SLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIP 434 (985)
Q Consensus 356 ~~~~~~~-~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 434 (985)
... +.. .+..+++|++|++++|.++..... .++..+..+++|++|+|++|.+++..+
T Consensus 244 ~~~-l~~~~~~~~~~L~~L~L~~n~l~~~~~~---------------------~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 244 MAE-LCPGLLHPSSRLRTLWIWECGITAKGCG---------------------DLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHH-HHHHHTSTTCCCCEEECTTSCCCHHHHH---------------------HHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred HHH-HHHHHhcCCCCceEEECcCCCCCHHHHH---------------------HHHHHHhhCCCcceEECCCCCCchHHH
Confidence 100 000 011244455555555544421000 023344445555666666655543333
Q ss_pred cccccc-----ccccceecccccccCC----chhhhhhccCCCeEEccCCccccccCCCCcC-----cCcCceEeeccce
Q 001988 435 VTFGGL-----QKLQGLDLAFNKLAGS----IPDEICLLSRLNELDLNGNKISGSISSCLGN-----LTSLQYLNLGSNR 500 (985)
Q Consensus 435 ~~~~~l-----~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~L~~N~ 500 (985)
..+... ++|++|++++|.+++. ++..+..+++|++|+|++|++++..+..+.. .++|++|++++|+
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 333221 4566666666665543 3444555566666666666665443333321 4566666666666
Q ss_pred eee----ecCCCccCccceeEEeecCCcccCCccccc-----cCCCcccEEEccCCccCccCchhh
Q 001988 501 FTF----VIPSTFWNLKDILSFDISSNLLDGPISLAI-----GNLKAVVGIDLSRNNLSGNIPTTL 557 (985)
Q Consensus 501 l~~----~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~~p~~~ 557 (985)
+++ .+|..+..+++|++|++++|++++.....+ ....+|+.|++.++.+....+..+
T Consensus 382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l 447 (461)
T 1z7x_W 382 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 447 (461)
T ss_dssp CCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred CChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHH
Confidence 664 455556666666777777766654321111 123457777777777665444433
No 283
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=2e-31 Score=296.78 Aligned_cols=253 Identities=21% Similarity=0.250 Sum_probs=160.3
Q ss_pred hccccceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEE
Q 001988 168 HLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVL 247 (985)
Q Consensus 168 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 247 (985)
++++|++|+|++|.+++..|..|+++++|++|+|++|+++ .+|..+. ++|++|++++|++++..+..|.++++|++|
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 150 (330)
T 1xku_A 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVV 150 (330)
T ss_dssp TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEE
T ss_pred cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEE
Confidence 3444444444444554455666666677777777777766 4555444 567777777777776666677777777777
Q ss_pred EecCCcCcc--cCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccEEEccCc
Q 001988 248 QLGFNNLTG--VVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMGSN 325 (985)
Q Consensus 248 ~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 325 (985)
++++|.++. ..+..+.++++|++|++++|+++ .+|..+. ++|++|++++|++++..|..+..+++|+.|++++|
T Consensus 151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226 (330)
T ss_dssp ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred ECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 777777753 56677777777777777777776 4555432 67777888877777777777777777888888888
Q ss_pred ccccccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhcccceecccccc
Q 001988 326 SFSGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNI 405 (985)
Q Consensus 326 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l 405 (985)
++++..+..+..+++|++|++++|+++.++. .+..+++|++|++++|++++..+..+....
T Consensus 227 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~------~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~------------- 287 (330)
T 1xku_A 227 SISAVDNGSLANTPHLRELHLNNNKLVKVPG------GLADHKYIQVVYLHNNNISAIGSNDFCPPG------------- 287 (330)
T ss_dssp CCCEECTTTGGGSTTCCEEECCSSCCSSCCT------TTTTCSSCCEEECCSSCCCCCCTTSSSCSS-------------
T ss_pred cCceeChhhccCCCCCCEEECCCCcCccCCh------hhccCCCcCEEECCCCcCCccChhhcCCcc-------------
Confidence 7777766677777777777777777665443 244556666666666666544333332110
Q ss_pred ccccCCcCCCCCCccEEEccCCCCCC--CCCccccccccccceeccccc
Q 001988 406 SGNIPKAIGNLSNLIVLSLGGNNLSG--SIPVTFGGLQKLQGLDLAFNK 452 (985)
Q Consensus 406 ~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~ 452 (985)
.....+.|+.|++++|.+.. ..|..|..+.+++.++|++|+
T Consensus 288 ------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 288 ------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp ------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ------cccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 01123556667777776642 445566666666666666663
No 284
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=99.98 E-value=2.4e-33 Score=310.76 Aligned_cols=237 Identities=21% Similarity=0.247 Sum_probs=199.0
Q ss_pred HHhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcc------hHHHHHHHHHHHHhcC--CCCeeeEEeeeec
Q 001988 723 RATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCAS------TLKSFEAECEVIKNIR--HRNLVKIISSCSN 793 (985)
Q Consensus 723 ~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~------~~~~~~~E~~il~~l~--h~niv~l~~~~~~ 793 (985)
...++|+..+.||+|+||.||+|+.. +++.||||++...... ....+.+|++++++++ ||||+++++++..
T Consensus 40 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~ 119 (320)
T 3a99_A 40 PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER 119 (320)
T ss_dssp CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEEC
T ss_pred CccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEec
Confidence 34578999999999999999999864 7899999999755321 2245678999999996 5999999999999
Q ss_pred CCceEEEEeccCC-CChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEc-CCCcEEEeccc
Q 001988 794 DDFKALVLEYMSN-GSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLD-EDMVAHLSDFG 871 (985)
Q Consensus 794 ~~~~~lv~e~~~~-gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~-~~~~~kl~DfG 871 (985)
.+..++||||+.+ ++|.+++...+ .+++..+..++.|+++||+|| |+.||+||||||+||+++ +++.+||+|||
T Consensus 120 ~~~~~lv~e~~~~~~~L~~~l~~~~-~l~~~~~~~i~~qi~~~L~~L---H~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg 195 (320)
T 3a99_A 120 PDSFVLILERPEPVQDLFDFITERG-ALQEELARSFFWQVLEAVRHC---HNCGVLHRDIKDENILIDLNRGELKLIDFG 195 (320)
T ss_dssp SSEEEEEEECCSSEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCSGGGEEEETTTTEEEECCCT
T ss_pred CCcEEEEEEcCCCCccHHHHHhccC-CCCHHHHHHHHHHHHHHHHHH---HHCCcEeCCCCHHHEEEeCCCCCEEEeeCc
Confidence 9999999999976 89999998753 689999999999999999999 789999999999999999 78999999999
Q ss_pred CceeccCCCCcceecccccccccccccccccCcc-chhhhcccccccchhhhcccccccCcchhhh-----hHHHHHHHH
Q 001988 872 MAKLLSGEDESTMRTQTLATIGYMAPDEIFVGEL-SLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA-----AKEQCLLSI 945 (985)
Q Consensus 872 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~l 945 (985)
+++...... .....||+.|+|||.+....+ +.++|+ |++|+++++++++..++....... .+..+++++
T Consensus 196 ~~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~~Di-~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~ 270 (320)
T 3a99_A 196 SGALLKDTV----YTDFDGTRVYSPPEWIRYHRYHGRSAAV-WSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSEC 270 (320)
T ss_dssp TCEECCSSC----BCCCCSCGGGSCHHHHHHSCBCHHHHHH-HHHHHHHHHHHHSSCSCCSHHHHHHCCCCCSSCCCHHH
T ss_pred ccccccccc----ccCCCCCccCCChHHhccCCCCCccchH-HhHHHHHHHHHHCCCCCCChhhhhcccccccccCCHHH
Confidence 998864322 233569999999999887776 678899 999999999999887654332110 112356779
Q ss_pred HHHHHHccCCCCCCCCCHHHHHH
Q 001988 946 FSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 946 ~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
.+++.+||..||++||++.|+++
T Consensus 271 ~~li~~~l~~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 271 QHLIRWCLALRPSDRPTFEEIQN 293 (320)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHccCChhhCcCHHHHhc
Confidence 99999999999999999999986
No 285
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=99.98 E-value=4.4e-33 Score=307.69 Aligned_cols=238 Identities=21% Similarity=0.274 Sum_probs=191.4
Q ss_pred HHHhcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcc------hHHHHHHHHHHHHhc----CCCCeeeEEee
Q 001988 722 LRATDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCAS------TLKSFEAECEVIKNI----RHRNLVKIISS 790 (985)
Q Consensus 722 ~~~~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~------~~~~~~~E~~il~~l----~h~niv~l~~~ 790 (985)
....++|...+.||+|+||.||+|+.. +++.||||+++..... ....+.+|+++++++ +||||++++++
T Consensus 27 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~ 106 (312)
T 2iwi_A 27 EAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDW 106 (312)
T ss_dssp ------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEE
T ss_pred hhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEE
Confidence 345678999999999999999999864 7899999999765322 223456799999999 89999999999
Q ss_pred eecCCceEEEEec-cCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEc-CCCcEEEe
Q 001988 791 CSNDDFKALVLEY-MSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLD-EDMVAHLS 868 (985)
Q Consensus 791 ~~~~~~~~lv~e~-~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~-~~~~~kl~ 868 (985)
+...+..++|||| +++++|.+++...+ .+++..+..++.|+++||+|| |++||+||||||+||+++ .++.+||+
T Consensus 107 ~~~~~~~~~v~e~~~~~~~L~~~l~~~~-~~~~~~~~~~~~qi~~~l~~l---H~~~i~H~dlkp~Nil~~~~~~~~kl~ 182 (312)
T 2iwi_A 107 FETQEGFMLVLERPLPAQDLFDYITEKG-PLGEGPSRCFFGQVVAAIQHC---HSRGVVHRDIKDENILIDLRRGCAKLI 182 (312)
T ss_dssp C-----CEEEEECCSSEEEHHHHHHHHC-SCCHHHHHHHHHHHHHHHHHH---HHHTEECCCCSGGGEEEETTTTEEEEC
T ss_pred EecCCeEEEEEEecCCCCCHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHH---HHCCeeecCCChhhEEEeCCCCeEEEE
Confidence 9999999999999 78999999998754 689999999999999999999 788999999999999999 89999999
Q ss_pred cccCceeccCCCCcceecccccccccccccccccCccc-hhhhcccccccchhhhcccccccCcchhh-----hhHHHHH
Q 001988 869 DFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELS-LKRWVNDLLPVSLVEVVDKSLLSGEEKHF-----AAKEQCL 942 (985)
Q Consensus 869 DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~dv~~~~g~~~~~i~~~~~~~~~~~~~-----~~~~~~~ 942 (985)
|||+++.+.... .....||+.|+|||.+.+..+. .++|+ |++|+++++++++..+....... ..+..++
T Consensus 183 dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~Di-~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~ 257 (312)
T 2iwi_A 183 DFGSGALLHDEP----YTDFDGTRVYSPPEWISRHQYHALPATV-WSLGILLYDMVCGDIPFERDQEILEAELHFPAHVS 257 (312)
T ss_dssp CCSSCEECCSSC----BCCCCSCTTTSCHHHHHHSCBCHHHHHH-HHHHHHHHHHHHSSCSCCSHHHHHHTCCCCCTTSC
T ss_pred EcchhhhcccCc----ccccCCcccccCceeeecCCCCCccchH-HHHHHHHHHHHHCCCCCCChHHHhhhccCCcccCC
Confidence 999998875322 2345699999999998877764 58899 99999999999988765432211 1123356
Q ss_pred HHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 943 LSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 943 ~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
.++.+++.+||..+|++||++.|+++
T Consensus 258 ~~~~~li~~~l~~~p~~Rps~~e~l~ 283 (312)
T 2iwi_A 258 PDCCALIRRCLAPKPSSRPSLEEILL 283 (312)
T ss_dssp HHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred HHHHHHHHHHccCChhhCcCHHHHhc
Confidence 77999999999999999999999987
No 286
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=99.98 E-value=2.7e-32 Score=307.13 Aligned_cols=233 Identities=19% Similarity=0.252 Sum_probs=194.5
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CC-cEEEEEEeccCCcchHHHHHHHHHHHHhcCCCC------eeeEEeeeecCCc
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DG-VEIAIKVFHPQCASTLKSFEAECEVIKNIRHRN------LVKIISSCSNDDF 796 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~-~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~n------iv~l~~~~~~~~~ 796 (985)
.++|...+.||+|+||.||+|... ++ +.||+|+++.. ......+.+|++++++++|++ ++.+++++...+.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH 96 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe
Confidence 468999999999999999999875 44 78999999754 334567889999999997665 9999999999999
Q ss_pred eEEEEeccCCCChHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEE----------------
Q 001988 797 KALVLEYMSNGSLEDCLHSS-NCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLL---------------- 859 (985)
Q Consensus 797 ~~lv~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill---------------- 859 (985)
.++||||+ ++++.+++... ...+++..+..++.|++.||+|| |++||+||||||+||++
T Consensus 97 ~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~l---H~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~ 172 (355)
T 2eu9_A 97 MCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFL---HENQLTHTDLKPENILFVNSEFETLYNEHKSCE 172 (355)
T ss_dssp EEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHH---HTTTEECCCCCGGGEEESCCCEEEEECCC-CCC
T ss_pred EEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH---HHCCcccCCCCHHHEEEeccccccccccccccc
Confidence 99999999 66777777655 35689999999999999999999 78999999999999999
Q ss_pred ---cCCCcEEEecccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh
Q 001988 860 ---DEDMVAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA 936 (985)
Q Consensus 860 ---~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~ 936 (985)
+.++.+||+|||+++..... .....||+.|+|||.+.+..++.++|+ |++|+++++++++..+........
T Consensus 173 ~~~~~~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di-~slG~il~el~~g~~pf~~~~~~~ 246 (355)
T 2eu9_A 173 EKSVKNTSIRVADFGSATFDHEH-----HTTIVATRHYRPPEVILELGWAQPCDV-WSIGCILFEYYRGFTLFQTHENRE 246 (355)
T ss_dssp EEEESCCCEEECCCTTCEETTSC-----CCSSCSCGGGCCHHHHTTCCCCTHHHH-HHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred ccccCCCcEEEeecCcccccccc-----ccCCcCCCcccCCeeeecCCCCCccch-HHHHHHHHHHHhCCCCCCCCCHHH
Confidence 67889999999999875322 233569999999999999999999999 999999999999887654322111
Q ss_pred h-------------------------------------------------------HHHHHHHHHHHHHHccCCCCCCCC
Q 001988 937 A-------------------------------------------------------KEQCLLSIFSLALECTMESPEKRI 961 (985)
Q Consensus 937 ~-------------------------------------------------------~~~~~~~l~~l~~~cl~~~P~~RP 961 (985)
. ...++.++.+++.+||..||++||
T Consensus 247 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rp 326 (355)
T 2eu9_A 247 HLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRI 326 (355)
T ss_dssp HHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSC
T ss_pred HHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCc
Confidence 0 011245788999999999999999
Q ss_pred CHHHHHH
Q 001988 962 DAKDTIT 968 (985)
Q Consensus 962 t~~ev~~ 968 (985)
|+.|+++
T Consensus 327 t~~e~l~ 333 (355)
T 2eu9_A 327 TLAEALL 333 (355)
T ss_dssp CHHHHTT
T ss_pred CHHHHhc
Confidence 9999974
No 287
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=99.98 E-value=1.9e-32 Score=308.09 Aligned_cols=231 Identities=22% Similarity=0.285 Sum_probs=191.0
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcc--hHHHHHHHHHHHHhcCCCCeeeEEeeeecCCc-----
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCAS--TLKSFEAECEVIKNIRHRNLVKIISSCSNDDF----- 796 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~--~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~----- 796 (985)
.++|...+.||+|+||.||+|+.. +|+.||||++...... ..+.+.+|+.++++++||||+++++++...+.
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 367888999999999999999875 7899999999765332 34678899999999999999999999987654
Q ss_pred -eEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCcee
Q 001988 797 -KALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKL 875 (985)
Q Consensus 797 -~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~ 875 (985)
.++||||++ ++|.+++.. .+++..+..++.|++.||+|| |++||+||||||+||+++.++.+||+|||+++.
T Consensus 103 ~~~lv~e~~~-~~l~~~~~~---~~~~~~~~~i~~qi~~al~~L---H~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~ 175 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMGL---KFSEEKIQYLVYQMLKGLKYI---HSAGVVHRDLKPGNLAVNEDCELKILDFGLARH 175 (353)
T ss_dssp CCEEEEECCS-EEGGGTTTS---CCCHHHHHHHHHHHHHHHHHH---HHTTCCCSSCCGGGEEECTTCCEEECSTTCTTC
T ss_pred eEEEEecccc-CCHHHHhcC---CCCHHHHHHHHHHHHHHHHHH---HHCCcccCCCCHHHEeECCCCcEEEeecccccC
Confidence 499999997 588887753 489999999999999999999 788999999999999999999999999999986
Q ss_pred ccCCCCcceeccccccccccccccccc-CccchhhhcccccccchhhhcccccccCcchhhhh-----------------
Q 001988 876 LSGEDESTMRTQTLATIGYMAPDEIFV-GELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAA----------------- 937 (985)
Q Consensus 876 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~----------------- 937 (985)
.... .....+|+.|+|||.+.+ ..++.++|+ |++|+++++++++..+.........
T Consensus 176 ~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~Di-~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~ 249 (353)
T 3coi_A 176 ADAE-----MTGYVVTRWYRAPEVILSWMHYNQTVDI-WSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQ 249 (353)
T ss_dssp -------------CCSBCCSCHHHHSCCSCCCTTHHH-HHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHHT
T ss_pred CCCC-----ccccccCcCcCCHHHHhCcCCCCchhhH-HHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHH
Confidence 5321 233568999999999877 678899999 9999999999998876543221100
Q ss_pred -------------------------HHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 938 -------------------------KEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 938 -------------------------~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
...++.++.+++.+|+..||++||++.|+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~ 305 (353)
T 3coi_A 250 KLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 305 (353)
T ss_dssp TCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 0124567899999999999999999999986
No 288
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=99.98 E-value=9.9e-33 Score=307.84 Aligned_cols=231 Identities=22% Similarity=0.240 Sum_probs=172.0
Q ss_pred hcCccCCc-eeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHH-HHHhcCCCCeeeEEeeeec----CCce
Q 001988 725 TDNFAENN-IIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECE-VIKNIRHRNLVKIISSCSN----DDFK 797 (985)
Q Consensus 725 ~~~~~~~~-~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~-il~~l~h~niv~l~~~~~~----~~~~ 797 (985)
.++|...+ .||+|+||.||+|+.. +++.||||++... ....+|+. .++.++||||+++++++.. ....
T Consensus 27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 101 (336)
T 3fhr_A 27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS-----PKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCL 101 (336)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc-----HHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceE
Confidence 56788854 6999999999999976 7999999998643 22233333 4566799999999999876 4458
Q ss_pred EEEEeccCCCChHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcC---CCcEEEecccCc
Q 001988 798 ALVLEYMSNGSLEDCLHSSN-CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDE---DMVAHLSDFGMA 873 (985)
Q Consensus 798 ~lv~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~---~~~~kl~DfGla 873 (985)
++||||+++|+|.+++.... ..+++..+..++.|++.||+|| |++||+||||||+||+++. ++.+||+|||++
T Consensus 102 ~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~L---H~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~ 178 (336)
T 3fhr_A 102 LIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFL---HSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFA 178 (336)
T ss_dssp EEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHH---HHTTEECSCCSGGGEEESCSSTTCCEEECCCTTC
T ss_pred EEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH---HhCCeecCCCCHHHEEEEecCCCceEEEeccccc
Confidence 99999999999999998763 4689999999999999999999 7889999999999999976 456999999999
Q ss_pred eeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhh-----------------
Q 001988 874 KLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFA----------------- 936 (985)
Q Consensus 874 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~----------------- 936 (985)
+..... ......||+.|+|||.+....++.++|+ |++|+++++++++..+........
T Consensus 179 ~~~~~~----~~~~~~~t~~y~aPE~~~~~~~~~~~Di-~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 253 (336)
T 3fhr_A 179 KETTQN----ALQTPCYTPYYVAPEVLGPEKYDKSCDM-WSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFP 253 (336)
T ss_dssp EEC--------------------------CHHHHHHHH-HHHHHHHHHHHHSSCCC---------------------CCC
T ss_pred eecccc----ccccCCCCcCccChhhhCCCCCCchhhH-HHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhhccccccC
Confidence 876422 1234568999999999999999999999 999999999999887653321110
Q ss_pred --hHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 937 --AKEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 937 --~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
....+++++.+++.+|+..||.+||++.|+++
T Consensus 254 ~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 287 (336)
T 3fhr_A 254 NPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMN 287 (336)
T ss_dssp TTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred chhhccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 11235678999999999999999999999997
No 289
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=99.98 E-value=1.2e-32 Score=316.71 Aligned_cols=237 Identities=22% Similarity=0.330 Sum_probs=186.4
Q ss_pred HhcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhc-CCCCeeeEEeeeecCCceEEEEe
Q 001988 724 ATDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNI-RHRNLVKIISSCSNDDFKALVLE 802 (985)
Q Consensus 724 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l-~h~niv~l~~~~~~~~~~~lv~e 802 (985)
...+|...+.||+|+||+||.....+++.||||++..... ..+.+|+++++++ +|||||++++++.+.+..++|||
T Consensus 22 ~~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E 98 (432)
T 3p23_A 22 GKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIE 98 (432)
T ss_dssp TTEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ccEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEE
Confidence 3456888899999999997766666899999999975432 2356899999999 79999999999999999999999
Q ss_pred ccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcC-----CCcEEEecccCceecc
Q 001988 803 YMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDE-----DMVAHLSDFGMAKLLS 877 (985)
Q Consensus 803 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~-----~~~~kl~DfGla~~~~ 877 (985)
|++ |+|.+++........+.....++.||+.||+|| |++||+||||||+||+++. ...+||+|||+|+.+.
T Consensus 99 ~~~-g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~L---H~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~ 174 (432)
T 3p23_A 99 LCA-ATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHL---HSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLA 174 (432)
T ss_dssp CCS-EEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHH---HHTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC-
T ss_pred CCC-CCHHHHHHhcCCCccchhHHHHHHHHHHHHHHH---HHCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeecc
Confidence 996 699999987765566666788999999999999 7889999999999999953 2368899999998765
Q ss_pred CCCCc-ceecccccccccccccccc---cCccchhhhcccccccchhhhcc-cccccCcchhh--------------hhH
Q 001988 878 GEDES-TMRTQTLATIGYMAPDEIF---VGELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHF--------------AAK 938 (985)
Q Consensus 878 ~~~~~-~~~~~~~gt~~y~aPE~~~---~~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~--------------~~~ 938 (985)
..... ......+||+.|+|||.+. ...++.++|+ |++|++++++++ +..+.+..... ...
T Consensus 175 ~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~Di-wSlG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~~~~~~ 253 (432)
T 3p23_A 175 VGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDI-FSAGCVFYYVISEGSHPFGKSLQRQANILLGACSLDCLHPE 253 (432)
T ss_dssp -----------CCSCTTSCCGGGTSCC---CCCTHHHH-HHHHHHHHHHHTTSCBTTBSTTTHHHHHHTTCCCCTTSCTT
T ss_pred CCCcceeeccccCCCcCccChhhhhcccccCCCcHHHH-HHHHHHHHHHHcCCCCCcchhhHHHHHHHhccCCccccCcc
Confidence 33221 2234567999999999987 4667889999 999999999998 66655432111 011
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 939 EQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 939 ~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
......+.+++.+||..||.+||++.|+++
T Consensus 254 ~~~~~~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 254 KHEDVIARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp CHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 234566889999999999999999999984
No 290
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=99.98 E-value=1.2e-32 Score=312.33 Aligned_cols=233 Identities=18% Similarity=0.287 Sum_probs=194.4
Q ss_pred hcCccCCceeeccCceeEEEEEE-cCCcEEEEEEeccCCcchHHHHHHHHHHHHhcC-----------CCCeeeEEeeee
Q 001988 725 TDNFAENNIIGIGGFGSVYRARL-EDGVEIAIKVFHPQCASTLKSFEAECEVIKNIR-----------HRNLVKIISSCS 792 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~-----------h~niv~l~~~~~ 792 (985)
.++|...+.||+|+||.||+|+. .+++.||||++... ......+.+|++++++++ ||||+++++++.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~ 96 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN 96 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence 46799999999999999999996 47899999999754 234567889999999886 899999999987
Q ss_pred cCC----ceEEEEeccCCCChHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhcCCC-CeEeCCCCCCCEEEc------
Q 001988 793 NDD----FKALVLEYMSNGSLEDCLHSS-NCALNIFCRLNIMIDIASALEYLHFGHST-PIIHCDLKPSNVLLD------ 860 (985)
Q Consensus 793 ~~~----~~~lv~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~-~ivHrDlk~~Nill~------ 860 (985)
..+ ..++||||+ +++|.+++... ...+++..+..++.||+.||+|| |++ ||+||||||+||+++
T Consensus 97 ~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~l---H~~~~ivH~Dikp~NIll~~~~~~~ 172 (373)
T 1q8y_A 97 HKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYM---HRRCGIIHTDIKPENVLMEIVDSPE 172 (373)
T ss_dssp EEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHH---HHTTCEECSCCSGGGEEEEEEETTT
T ss_pred ccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHH---HhcCCEEecCCChHHeEEeccCCCc
Confidence 654 789999999 89999999864 34589999999999999999999 676 999999999999994
Q ss_pred CCCcEEEecccCceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh-----
Q 001988 861 EDMVAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF----- 935 (985)
Q Consensus 861 ~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~----- 935 (985)
..+.+||+|||+++..... .....||+.|+|||.+.+..++.++|+ |++|+++++++++..+.......
T Consensus 173 ~~~~~kl~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~Di-~slG~il~el~~g~~pf~~~~~~~~~~~ 246 (373)
T 1q8y_A 173 NLIQIKIADLGNACWYDEH-----YTNSIQTREYRSPEVLLGAPWGCGADI-WSTACLIFELITGDFLFEPDEGHSYTKD 246 (373)
T ss_dssp TEEEEEECCCTTCEETTBC-----CCSCCSCGGGCCHHHHHTCCCCTHHHH-HHHHHHHHHHHHSSCCC---------CH
T ss_pred CcceEEEcccccccccCCC-----CCCCCCCccccCcHHHhCCCCCchHhH-HHHHHHHHHHHhCCCCCCCCcccccCCh
Confidence 4458999999999876422 223469999999999999999999999 99999999999988765422100
Q ss_pred ------------------------------------------------------hhHHHHHHHHHHHHHHccCCCCCCCC
Q 001988 936 ------------------------------------------------------AAKEQCLLSIFSLALECTMESPEKRI 961 (985)
Q Consensus 936 ------------------------------------------------------~~~~~~~~~l~~l~~~cl~~~P~~RP 961 (985)
..+..+++++.+++.+||..||++||
T Consensus 247 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rp 326 (373)
T 1q8y_A 247 DDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRA 326 (373)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCB
T ss_pred HHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccC
Confidence 01134577899999999999999999
Q ss_pred CHHHHHH
Q 001988 962 DAKDTIT 968 (985)
Q Consensus 962 t~~ev~~ 968 (985)
++.|+++
T Consensus 327 t~~ell~ 333 (373)
T 1q8y_A 327 DAGGLVN 333 (373)
T ss_dssp CHHHHHT
T ss_pred CHHHHhh
Confidence 9999986
No 291
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=99.97 E-value=2.8e-32 Score=314.80 Aligned_cols=234 Identities=23% Similarity=0.273 Sum_probs=182.7
Q ss_pred CccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhc-CCCCeeeEEeeeecCCceEEEEeccC
Q 001988 727 NFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNI-RHRNLVKIISSCSNDDFKALVLEYMS 805 (985)
Q Consensus 727 ~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l-~h~niv~l~~~~~~~~~~~lv~e~~~ 805 (985)
.|...+.||+|+||+||.+...+|+.||||++... ..+.+.+|+++++++ +||||+++++++.+.+..++||||++
T Consensus 16 ~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~ 92 (434)
T 2rio_A 16 LVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN 92 (434)
T ss_dssp CEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS
T ss_pred eeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC
Confidence 45556889999999998877778999999998653 235678999999987 89999999999999999999999995
Q ss_pred CCChHHHhhcCCCC------CCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCC-------------CcEE
Q 001988 806 NGSLEDCLHSSNCA------LNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDED-------------MVAH 866 (985)
Q Consensus 806 ~gsL~~~l~~~~~~------~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~-------------~~~k 866 (985)
|+|.+++...... .++..++.++.||+.||+|| |++||+||||||+||+++.+ +.+|
T Consensus 93 -gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~L---H~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~k 168 (434)
T 2rio_A 93 -LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHL---HSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRIL 168 (434)
T ss_dssp -EEHHHHHHTC------------CCHHHHHHHHHHHHHHH---HHTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEE
T ss_pred -CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHH---HHCCccccCCChHhEEEecCcccccccccCCCceEEE
Confidence 6999999865321 12234567999999999999 78899999999999999754 4899
Q ss_pred EecccCceeccCCCCcc--eeccccccccccccccccc-------Cccchhhhcccccccchhhhcc-cccccCcchhh-
Q 001988 867 LSDFGMAKLLSGEDEST--MRTQTLATIGYMAPDEIFV-------GELSLKRWVNDLLPVSLVEVVD-KSLLSGEEKHF- 935 (985)
Q Consensus 867 l~DfGla~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~-------~~~~~~~dv~~~~g~~~~~i~~-~~~~~~~~~~~- 935 (985)
|+|||+++.+....... .....+||+.|+|||.+.+ ..++.++|+ |++|++++++++ +..+.......
T Consensus 169 L~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~Di-wSlG~il~ellt~g~~Pf~~~~~~~ 247 (434)
T 2rio_A 169 ISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDI-FSMGCVFYYILSKGKHPFGDKYSRE 247 (434)
T ss_dssp ECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHH-HHHHHHHHHHHTTSCCTTCSTTTHH
T ss_pred EcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhh-HhHHHHHHHHHhCCCCCCCCchhhH
Confidence 99999999875432211 2234579999999999865 678999999 999999999998 66655432110
Q ss_pred ---------------hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 936 ---------------AAKEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 936 ---------------~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
.....++.++.+++.+||..||.+||++.|+++
T Consensus 248 ~~i~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 248 SNIIRGIFSLDEMKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp HHHHHTCCCCCCCTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHhcCCCCcccccccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence 012345688999999999999999999999985
No 292
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=99.97 E-value=1.8e-32 Score=304.91 Aligned_cols=236 Identities=22% Similarity=0.278 Sum_probs=175.6
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCc-chHHHHHHHHH-HHHhcCCCCeeeEEeeeecCCceEEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA-STLKSFEAECE-VIKNIRHRNLVKIISSCSNDDFKALVL 801 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~-~~~~~~~~E~~-il~~l~h~niv~l~~~~~~~~~~~lv~ 801 (985)
.++|...+.||+|+||.||+|... +++.||||+++.... ....++..|+. +++.++||||+++++++.+.+..++||
T Consensus 21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~ 100 (327)
T 3aln_A 21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICM 100 (327)
T ss_dssp SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEE
Confidence 478899999999999999999975 789999999976532 23445566666 666779999999999999999999999
Q ss_pred eccCCCChHHHhhc----CCCCCCHHHHHHHHHHHHHHHHHHHhcCCC-CeEeCCCCCCCEEEcCCCcEEEecccCceec
Q 001988 802 EYMSNGSLEDCLHS----SNCALNIFCRLNIMIDIASALEYLHFGHST-PIIHCDLKPSNVLLDEDMVAHLSDFGMAKLL 876 (985)
Q Consensus 802 e~~~~gsL~~~l~~----~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~-~ivHrDlk~~Nill~~~~~~kl~DfGla~~~ 876 (985)
||+++ +|.+++.. ....+++..+..++.|++.||.|| |+. ||+||||||+||+++.++.+||+|||+++.+
T Consensus 101 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~l---H~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~ 176 (327)
T 3aln_A 101 ELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHL---KENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQL 176 (327)
T ss_dssp CCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHH---HHHHSCCCSCCCGGGEEEETTTEEEECCCSSSCC-
T ss_pred eecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHH---hccCCEeECCCCHHHEEEcCCCCEEEccCCCceec
Confidence 99975 88777753 245789999999999999999999 566 9999999999999999999999999999876
Q ss_pred cCCCCcceeccccccccccccccc----ccCccchhhhcccccccchhhhcccccccCcchhh-----------------
Q 001988 877 SGEDESTMRTQTLATIGYMAPDEI----FVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF----------------- 935 (985)
Q Consensus 877 ~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~----------------- 935 (985)
.... ......||+.|+|||.+ .+..++.++|+ |++|+++++++++..+.......
T Consensus 177 ~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di-~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~ 252 (327)
T 3aln_A 177 VDSI---AKTRDAGCRPYMAPERIDPSASRQGYDVRSDV-WSLGITLYELATGRFPYPKWNSVFDQLTQVVKGDPPQLSN 252 (327)
T ss_dssp --------------------------------CCSHHHH-HHHHHHHHHHHHSCCCSSCC-------CCCCCSCCCCCCC
T ss_pred cccc---ccccCCCCccccCceeeccccCcCCCCchhhH-HHHHHHHHHHHHCCCCCCCcchHHHHHHHHhcCCCCCCCC
Confidence 4322 12234699999999998 56678899999 99999999999988665432100
Q ss_pred hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 936 AAKEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 936 ~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
.....++.++.+++.+||..||.+||++.|+++
T Consensus 253 ~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 253 SEEREFSPSFINFVNLCLTKDESKRPKYKELLK 285 (327)
T ss_dssp CSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred cccccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence 001235678999999999999999999999976
No 293
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=99.97 E-value=5.3e-32 Score=299.83 Aligned_cols=236 Identities=22% Similarity=0.290 Sum_probs=177.0
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcc-hH-HHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCAS-TL-KSFEAECEVIKNIRHRNLVKIISSCSNDDFKALVL 801 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~-~~-~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv~ 801 (985)
.++|...+.||+|+||.||+|+.. +++.||||++...... .. +.+..+..+++.++||||+++++++.+.+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~ 103 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM 103 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence 467888999999999999999975 7899999999765332 22 33444555678889999999999999999999999
Q ss_pred eccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCC-CeEeCCCCCCCEEEcCCCcEEEecccCceeccCCC
Q 001988 802 EYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHST-PIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGED 880 (985)
Q Consensus 802 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~-~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~ 880 (985)
||+ ++.+..........+++..+..++.|+++||+|| |++ ||+||||||+||+++.++.+||+|||+++.+....
T Consensus 104 e~~-~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~l---H~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~ 179 (318)
T 2dyl_A 104 ELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYL---KEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDK 179 (318)
T ss_dssp CCC-SEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH---HHHHCCCCCCCCGGGEEECTTSCEEECCCTTC-------
T ss_pred ecc-CCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH---HhhCCEEeCCCCHHHEEECCCCCEEEEECCCchhccCCc
Confidence 999 5566665554455789999999999999999999 564 99999999999999999999999999998764322
Q ss_pred Ccceecccccccccccccccc-----cCccchhhhcccccccchhhhcccccccCcchh-hhh--------------HHH
Q 001988 881 ESTMRTQTLATIGYMAPDEIF-----VGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKH-FAA--------------KEQ 940 (985)
Q Consensus 881 ~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~-~~~--------------~~~ 940 (985)
......||+.|+|||.+. ...++.++|+ |++|+++++++++..+...... ... ...
T Consensus 180 ---~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di-~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (318)
T 2dyl_A 180 ---AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADV-WSLGISLVELATGQFPYKNCKTDFEVLTKVLQEEPPLLPGHMG 255 (318)
T ss_dssp ----------CCTTCCHHHHC--------CCTHHHH-HHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHHSCCCCCCSSSC
T ss_pred ---cccccCCCccccChhhcccccccccCCccccch-hhHHHHHHHHHhCCCCCCCCCccHHHHHHHhccCCCCCCccCC
Confidence 223346999999999984 5678889999 9999999999998876543211 110 012
Q ss_pred HHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 941 CLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 941 ~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
++.++.+++.+||..||.+||++.|+++
T Consensus 256 ~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (318)
T 2dyl_A 256 FSGDFQSFVKDCLTKDHRKRPKYNKLLE 283 (318)
T ss_dssp CCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred CCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 4677999999999999999999999986
No 294
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.97 E-value=6.4e-32 Score=329.84 Aligned_cols=236 Identities=21% Similarity=0.278 Sum_probs=193.2
Q ss_pred hcCccCCceeeccCceeEEEEEEc--CCcEEEEEEeccCCc-chHHHHHHHHHHHHhcCCCCeeeEEeeeecCCc-----
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE--DGVEIAIKVFHPQCA-STLKSFEAECEVIKNIRHRNLVKIISSCSNDDF----- 796 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~--~~~~vAvK~~~~~~~-~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~----- 796 (985)
.++|.+.+.||+|+||.||+|++. +++.||||++..... .....+.+|++++++++||||+++++++...+.
T Consensus 79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 158 (681)
T 2pzi_A 79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV 158 (681)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence 368999999999999999999975 689999999875432 345678899999999999999999999987665
Q ss_pred eEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceec
Q 001988 797 KALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLL 876 (985)
Q Consensus 797 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~ 876 (985)
.|+||||++|++|.+++.. .+++.+++.++.||++||+|| |++||+||||||+||+++.+ .+||+|||+++..
T Consensus 159 ~~lv~E~~~g~~L~~~~~~---~l~~~~~~~~~~qi~~aL~~l---H~~giiHrDlkp~NIll~~~-~~kl~DFG~a~~~ 231 (681)
T 2pzi_A 159 GYIVMEYVGGQSLKRSKGQ---KLPVAEAIAYLLEILPALSYL---HSIGLVYNDLKPENIMLTEE-QLKLIDLGAVSRI 231 (681)
T ss_dssp EEEEEECCCCEECC----C---CCCHHHHHHHHHHHHHHHHHH---HHTTEECCCCSGGGEEECSS-CEEECCCTTCEET
T ss_pred eEEEEEeCCCCcHHHHHhC---CCCHHHHHHHHHHHHHHHHHH---HHCCCeecccChHHeEEeCC-cEEEEecccchhc
Confidence 6999999999999988764 689999999999999999999 78899999999999999985 8999999999886
Q ss_pred cCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcc-----hhhhhHHHHHHHHHHHHHH
Q 001988 877 SGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEE-----KHFAAKEQCLLSIFSLALE 951 (985)
Q Consensus 877 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~l~~l~~~ 951 (985)
... ....||+.|+|||++.++. +.++|+ |++|+++++++++..+.... +.........+.+.+++.+
T Consensus 232 ~~~------~~~~gt~~y~aPE~~~~~~-~~~sDi-~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ 303 (681)
T 2pzi_A 232 NSF------GYLYGTPGFQAPEIVRTGP-TVATDI-YTVGRTLAALTLDLPTRNGRYVDGLPEDDPVLKTYDSYGRLLRR 303 (681)
T ss_dssp TCC------SCCCCCTTTSCTTHHHHCS-CHHHHH-HHHHHHHHHHHSCCCEETTEECSSCCTTCHHHHHCHHHHHHHHH
T ss_pred ccC------CccCCCccccCHHHHcCCC-CCceeh-hhhHHHHHHHHhCCCCCcccccccccccccccccCHHHHHHHhh
Confidence 432 3356999999999887654 889999 99999999999876543321 1111223355779999999
Q ss_pred ccCCCCCCCC-CHHHHHHHHHHhHh
Q 001988 952 CTMESPEKRI-DAKDTITRLLKIRD 975 (985)
Q Consensus 952 cl~~~P~~RP-t~~ev~~~L~~i~~ 975 (985)
||..||.+|| ++.++.+.+..+..
T Consensus 304 ~l~~dP~~R~~~~~~l~~~l~~~~~ 328 (681)
T 2pzi_A 304 AIDPDPRQRFTTAEEMSAQLTGVLR 328 (681)
T ss_dssp HTCSSGGGSCSSHHHHHHHHHHHHH
T ss_pred hccCChhhCCCHHHHHHHHHHHHHH
Confidence 9999999999 56677777766543
No 295
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=99.97 E-value=2.4e-32 Score=323.19 Aligned_cols=243 Identities=23% Similarity=0.278 Sum_probs=196.3
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCC-cchHHHHHHHHHHHHhcCCCCeeeEEeeeec------CCc
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQC-ASTLKSFEAECEVIKNIRHRNLVKIISSCSN------DDF 796 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~-~~~~~~~~~E~~il~~l~h~niv~l~~~~~~------~~~ 796 (985)
.++|...+.||+|+||.||+|... +|+.||||+++... ....+.+.+|++++++++||||+++++++.. .+.
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~ 92 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL 92 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence 478999999999999999999864 78999999987653 3345678999999999999999999999765 677
Q ss_pred eEEEEeccCCCChHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCc---EEEeccc
Q 001988 797 KALVLEYMSNGSLEDCLHSSN--CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMV---AHLSDFG 871 (985)
Q Consensus 797 ~~lv~e~~~~gsL~~~l~~~~--~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~---~kl~DfG 871 (985)
.++||||+++|+|.+++.... ..+++..+..++.|++.||+|| |+.||+||||||+||+++.++. +||+|||
T Consensus 93 ~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yL---Hs~gIVHrDLKP~NILl~~~g~~~~vKL~DFG 169 (676)
T 3qa8_A 93 PLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYL---HENRIIHRDLKPENIVLQPGPQRLIHKIIDLG 169 (676)
T ss_dssp CCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHH---HHTTBCCCCCCSTTEEEECCSSSCEEEECSCC
T ss_pred EEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHH---HHCCCccCCCCHHHeEeecCCCceeEEEcccc
Confidence 899999999999999998653 2588889999999999999999 7899999999999999997765 9999999
Q ss_pred CceeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchh-----------------
Q 001988 872 MAKLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKH----------------- 934 (985)
Q Consensus 872 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~----------------- 934 (985)
+++...... ......||+.|+|||.+.+..++.++|+ |++|++++++++|..++.....
T Consensus 170 ~a~~~~~~~---~~~~~~gt~~Y~APE~l~~~~~s~ksDI-wSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~~~ 245 (676)
T 3qa8_A 170 YAKELDQGE---LCTEFVGTLQYLAPELLEQKKYTVTVDY-WSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIV 245 (676)
T ss_dssp CCCBTTSCC---CCCCCCSCCTTCSSCSSCCSCCSTTHHH-HHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC------CC
T ss_pred ccccccccc---ccccccCCcccCChHHhccCCCCchhHH-HHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccchhhh
Confidence 998764322 2234579999999999999999999999 9999999999998766532100
Q ss_pred ------------------hhhHHHHHHHHHHHHHHccCCCCCCCCCHHH-----HHHHHHHhH
Q 001988 935 ------------------FAAKEQCLLSIFSLALECTMESPEKRIDAKD-----TITRLLKIR 974 (985)
Q Consensus 935 ------------------~~~~~~~~~~l~~l~~~cl~~~P~~RPt~~e-----v~~~L~~i~ 974 (985)
.......++.+.+++.+|+..||++||++.| ..+.+..+.
T Consensus 246 ~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~~iL 308 (676)
T 3qa8_A 246 VYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQALDSIL 308 (676)
T ss_dssp SCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHHHHHH
T ss_pred hhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHHHHH
Confidence 0012236788999999999999999999988 445555544
No 296
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=99.97 E-value=3.3e-32 Score=303.89 Aligned_cols=224 Identities=19% Similarity=0.166 Sum_probs=176.4
Q ss_pred hcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCc--------chHHHHHHHHHHHHhcC---------CCCeeeE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCA--------STLKSFEAECEVIKNIR---------HRNLVKI 787 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~--------~~~~~~~~E~~il~~l~---------h~niv~l 787 (985)
.++|+..+.||+|+||.||+|+. +|+.||||+++.... ...+.+.+|++++++++ |||||++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l 97 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL 97 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence 46789999999999999999998 689999999976532 23477899999999886 7777766
Q ss_pred Eeee-----------------ec-------------CCceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHH
Q 001988 788 ISSC-----------------SN-------------DDFKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALE 837 (985)
Q Consensus 788 ~~~~-----------------~~-------------~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~ 837 (985)
.+.+ .+ .+..++||||+++|++.+.+.. ..+++..+..++.||+.||+
T Consensus 98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~--~~~~~~~~~~i~~qi~~aL~ 175 (336)
T 2vuw_A 98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT--KLSSLATAKSILHQLTASLA 175 (336)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT--TCCCHHHHHHHHHHHHHHHH
T ss_pred cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh--cCCCHHHHHHHHHHHHHHHH
Confidence 6653 22 6789999999999987777654 35799999999999999999
Q ss_pred HHHhcC-CCCeEeCCCCCCCEEEcCCC--------------------cEEEecccCceeccCCCCcceeccccccccccc
Q 001988 838 YLHFGH-STPIIHCDLKPSNVLLDEDM--------------------VAHLSDFGMAKLLSGEDESTMRTQTLATIGYMA 896 (985)
Q Consensus 838 ~Lh~~h-~~~ivHrDlk~~Nill~~~~--------------------~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~a 896 (985)
|| | ++||+||||||+|||++.++ .+||+|||+|+..... ..+||+.|+|
T Consensus 176 ~l---H~~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~-------~~~gt~~y~a 245 (336)
T 2vuw_A 176 VA---EASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG-------IVVFCDVSMD 245 (336)
T ss_dssp HH---HHHHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT-------EEECCCCTTC
T ss_pred HH---HHhCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC-------cEEEeecccC
Confidence 99 6 89999999999999999887 9999999999876421 2469999999
Q ss_pred ccccccCccchhhhcccccccchhhhcccccccCc-------------------chhhhhHHHHHHHHHHHHHHccCCCC
Q 001988 897 PDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGE-------------------EKHFAAKEQCLLSIFSLALECTMESP 957 (985)
Q Consensus 897 PE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~-------------------~~~~~~~~~~~~~l~~l~~~cl~~~P 957 (985)
||.+.+.. +.++|+|..++....++..+..+... .........+++++.+++.+|+..|
T Consensus 246 PE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~d- 323 (336)
T 2vuw_A 246 EDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRTMLNFS- 323 (336)
T ss_dssp SGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHHHHHHHHHHHHHHTCCCSSCCCSHHHHHHHHHHHHHHHHGGGSS-
T ss_pred hhhhcCCC-ccceehhhhhCCCCcccccccCCCcchhhhhHHHHhhhhhhccCcccchhhhhhcCHHHHHHHHHHhccC-
Confidence 99988665 89999944344435555444332211 1112234567889999999999966
Q ss_pred CCCCCHHHHH
Q 001988 958 EKRIDAKDTI 967 (985)
Q Consensus 958 ~~RPt~~ev~ 967 (985)
|+.|++
T Consensus 324 ----sa~e~l 329 (336)
T 2vuw_A 324 ----SATDLL 329 (336)
T ss_dssp ----SHHHHH
T ss_pred ----CHHHHH
Confidence 888887
No 297
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=99.97 E-value=3.8e-31 Score=287.54 Aligned_cols=216 Identities=14% Similarity=0.076 Sum_probs=182.8
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcc---hHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEEE
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCAS---TLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~---~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~lv 800 (985)
.++|+..+.||+|+||.||+|+.. +++.||||++...... ..+.+.+|+.++++++||||+++++++.+.+..|+|
T Consensus 30 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 109 (286)
T 3uqc_A 30 NGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVV 109 (286)
T ss_dssp TTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred cCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEE
Confidence 367899999999999999999975 5899999999866332 246789999999999999999999999999999999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCC
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGED 880 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~ 880 (985)
|||++|++|.+++... ....+..+++.|++.||+|| |++||+||||||+||+++.++.+||+++|
T Consensus 110 ~e~~~g~~L~~~l~~~---~~~~~~~~i~~ql~~aL~~l---H~~givH~Dikp~NIll~~~g~~kl~~~~--------- 174 (286)
T 3uqc_A 110 AEWIRGGSLQEVADTS---PSPVGAIRAMQSLAAAADAA---HRAGVALSIDHPSRVRVSIDGDVVLAYPA--------- 174 (286)
T ss_dssp EECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHH---HHTTCCCCCCSGGGEEEETTSCEEECSCC---------
T ss_pred EEecCCCCHHHHHhcC---CChHHHHHHHHHHHHHHHHH---HHCCCccCCCCcccEEEcCCCCEEEEecc---------
Confidence 9999999999999653 35667889999999999999 78999999999999999999999998543
Q ss_pred CcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchhh------------------hhHHHHH
Q 001988 881 ESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHF------------------AAKEQCL 942 (985)
Q Consensus 881 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~------------------~~~~~~~ 942 (985)
|++| ++.++|+ |++|++++++++++.++...... .....++
T Consensus 175 -------------~~~~-------~~~~~Di-~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (286)
T 3uqc_A 175 -------------TMPD-------ANPQDDI-RGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIP 233 (286)
T ss_dssp -------------CCTT-------CCHHHHH-HHHHHHHHHHHHSEECSCCCSBCCCSEECCBCTTSCBCCHHHHCTTSC
T ss_pred -------------ccCC-------CCchhHH-HHHHHHHHHHHHCCCCCCcCCcchhhHHHHHHhccCCCChhhcccCCC
Confidence 3333 6789999 99999999999998765432110 1113467
Q ss_pred HHHHHHHHHccCCCCCCCCCHHHHHHHHHHhHhhh
Q 001988 943 LSIFSLALECTMESPEKRIDAKDTITRLLKIRDTL 977 (985)
Q Consensus 943 ~~l~~l~~~cl~~~P~~RPt~~ev~~~L~~i~~~~ 977 (985)
+++.+++.+||..||++| |+.|+++.|+++....
T Consensus 234 ~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~~ 267 (286)
T 3uqc_A 234 FQISAVAARSVQGDGGIR-SASTLLNLMQQATAVA 267 (286)
T ss_dssp HHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHcccCCccC-CHHHHHHHHHHHhccC
Confidence 889999999999999999 9999999999987643
No 298
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=4.3e-31 Score=296.96 Aligned_cols=287 Identities=22% Similarity=0.232 Sum_probs=189.2
Q ss_pred CCCCCCcceeeeEEEeCCCCeEEEEEecCCcccccCchhcccccccceecccCCcCCCCCCcccccCCCCcEEEccCccc
Q 001988 54 WTSNASICSWIGIICDVNSHKVTTLNLSSFNLQGTIPPEIANLSSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQL 133 (985)
Q Consensus 54 w~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 133 (985)
|.....+|.|.|+ |+ +++++++ .+|..+. ++|++|+|++|.+++..+..+.++++|++|+|++|++
T Consensus 23 ~~~~~~~C~~~~~-c~----------~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 88 (353)
T 2z80_A 23 SNQASLSCDRNGI-CK----------GSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI 88 (353)
T ss_dssp ----CCEECTTSE-EE----------CCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCccCCCCCCCeE-ee----------CCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc
Confidence 5455678999988 75 4566777 6777665 5899999999999976666899999999999999999
Q ss_pred CCCCccccccCCccceeeeccccccCCCChhHhhhccccceecccCccccccCCc--ccCCCCCceEEEcccc-cCCCcc
Q 001988 134 SGSLSSFTFNTSSILDIRLSKNKLSGKLPENICNHLRYLKHLFLRENMFYGKIPS--SLSKCKQLQELHLGYN-NLSGAI 210 (985)
Q Consensus 134 ~~~~~~~~~~~~~L~~L~ls~n~l~g~lp~~~~~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~N-~l~~~~ 210 (985)
++..+..+..+++|++|++++|+++ .+|...++++++|++|+|++|.++ .+|. .+.++++|++|++++| .+++..
T Consensus 89 ~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 89 NTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred CccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccC
Confidence 9877777777777888888888777 466665567777777777777777 3443 6777777777777777 355444
Q ss_pred ccccccccccceEeeccccccCCchhhhcCCCCCCEEEecCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcC
Q 001988 211 PKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLAL 290 (985)
Q Consensus 211 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l 290 (985)
|..|+++++|++|++++|++++..|..++.+++|++|++++|+++...+..+..+++|++|++++|++++..+..+.
T Consensus 167 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--- 243 (353)
T 2z80_A 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS--- 243 (353)
T ss_dssp TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------
T ss_pred HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc---
Confidence 56677777777777777777766666777777777777777776543333334456666666666666533222111
Q ss_pred CCCcEEEecCccCCCcCCccccCCCCccEEEccCccccc----ccCCcccCCCCCceEeccCCcccCCCCcccccccccc
Q 001988 291 PNLEFLNLGINSFSGTIPSSITNASKLILLEMGSNSFSG----FIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLAN 366 (985)
Q Consensus 291 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~ 366 (985)
.......++.++++++.+++ .+|..+..+++|++|++++|+++.++.. .+.+
T Consensus 244 -------------------~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~-----~~~~ 299 (353)
T 2z80_A 244 -------------------TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDG-----IFDR 299 (353)
T ss_dssp ----------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTT-----TTTT
T ss_pred -------------------cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHH-----HHhc
Confidence 01123344445555554443 2455566666666666666666655443 1456
Q ss_pred cCcccEEEecCCCCCcc
Q 001988 367 CKKLRYLGLGGNPLDGF 383 (985)
Q Consensus 367 l~~L~~L~L~~N~l~~~ 383 (985)
+++|++|++++|++.+.
T Consensus 300 l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 300 LTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CTTCCEEECCSSCBCCC
T ss_pred CCCCCEEEeeCCCccCc
Confidence 66777777777776653
No 299
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=4.9e-33 Score=335.99 Aligned_cols=212 Identities=15% Similarity=0.101 Sum_probs=119.5
Q ss_pred CcceeeeEEEeCCCCeEEEEEecCCcccccCchhcccccccceecccCCcC---CCCCCcccc------------cCCCC
Q 001988 59 SICSWIGIICDVNSHKVTTLNLSSFNLQGTIPPEIANLSSLKSLDLSHNKL---SSNIPSSIF------------TMSTL 123 (985)
Q Consensus 59 ~~c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~l~~l~~L~~L~L~~n~l---~~~~p~~~~------------~l~~L 123 (985)
-|++|.++.+.. .+ .+.+.+ .+....+..+..+++|++|+|+++.. .+.+|..++ .+++|
T Consensus 40 vck~W~~~~~~~--~~--~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L 114 (592)
T 3ogk_B 40 VCRRWFKIDSET--RE--HVTMAL-CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQL 114 (592)
T ss_dssp SCHHHHHHHHHH--CC--EEEESC-GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred HhHHHHHhhhcc--cc--EEEEee-ccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCC
Confidence 455899985432 22 222322 23334445667889999999988532 244554433 57788
Q ss_pred cEEEccCcccCCCCccccccC--Cccceeeecccc-ccCCCChhHhhhccccceecccCcccccc----CCcccCCCCCc
Q 001988 124 KVLYLMDNQLSGSLSSFTFNT--SSILDIRLSKNK-LSGKLPENICNHLRYLKHLFLRENMFYGK----IPSSLSKCKQL 196 (985)
Q Consensus 124 ~~L~Ls~n~l~~~~~~~~~~~--~~L~~L~ls~n~-l~g~lp~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L 196 (985)
++|+|++|.+++..+.++... .+|++|+|++|. ++..-...+..++++|++|+|++|.+++. ++..+.++++|
T Consensus 115 ~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L 194 (592)
T 3ogk_B 115 KSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL 194 (592)
T ss_dssp CEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCC
T ss_pred CeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCc
Confidence 888888887765555544442 347777777665 22111122334566677777777766544 33344556666
Q ss_pred eEEEcccccCC----CccccccccccccceEeeccccccCCchhhhcCCCCCCEEEecCCcCc---ccCcccccCCCCCC
Q 001988 197 QELHLGYNNLS----GAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGFNNLT---GVVPATIFNMSTLK 269 (985)
Q Consensus 197 ~~L~L~~N~l~----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~---~~~p~~l~~l~~L~ 269 (985)
++|+|++|.++ +.++..+.++++|+.|++++|.+.+ +|..+..+++|+.|+++.+... +..+..+..+++|+
T Consensus 195 ~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~ 273 (592)
T 3ogk_B 195 EVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC 273 (592)
T ss_dssp CEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCC
T ss_pred cEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcccccc
Confidence 66666666665 2333344556666666666666663 5566666666666666643222 22333444455555
Q ss_pred EEEccCC
Q 001988 270 EIFLYNN 276 (985)
Q Consensus 270 ~L~L~~N 276 (985)
.|+++++
T Consensus 274 ~L~l~~~ 280 (592)
T 3ogk_B 274 RLGLSYM 280 (592)
T ss_dssp EEEETTC
T ss_pred ccCcccc
Confidence 5555543
No 300
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=4e-32 Score=328.02 Aligned_cols=434 Identities=15% Similarity=0.116 Sum_probs=244.1
Q ss_pred CCChhHhhhccccceecccCccc---cccCCcccC------------CCCCceEEEcccccCCCccccccccc--cccce
Q 001988 160 KLPENICNHLRYLKHLFLRENMF---YGKIPSSLS------------KCKQLQELHLGYNNLSGAIPKEIGNL--TVLQR 222 (985)
Q Consensus 160 ~lp~~~~~~l~~L~~L~L~~n~l---~~~~p~~l~------------~l~~L~~L~L~~N~l~~~~p~~~~~l--~~L~~ 222 (985)
..|..++..+++|++|+|+++.. .+.+|..++ .+++|++|+|++|.+++..+..++.. .+|++
T Consensus 63 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 63 ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLET 142 (592)
T ss_dssp SCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCE
T ss_pred cChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcE
Confidence 45677778888899999877532 234554444 56667777777776665555555543 33666
Q ss_pred Eeecccc-cc-CCchhhhcCCCCCCEEEecCCcCccc----CcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEE
Q 001988 223 ISLINNK-LH-GEIPQEIGYLQNLDVLQLGFNNLTGV----VPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFL 296 (985)
Q Consensus 223 L~L~~N~-l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L 296 (985)
|+|++|. ++ ..++....++++|++|+|++|.+++. ++..+.++++|++|++++|.+++.-+
T Consensus 143 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~------------- 209 (592)
T 3ogk_B 143 LKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP------------- 209 (592)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH-------------
T ss_pred EECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCH-------------
Confidence 6666665 11 11222233566666666666665544 23334455556666666555541111
Q ss_pred EecCccCCCcCCccccCCCCccEEEccCcccccccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEec
Q 001988 297 NLGINSFSGTIPSSITNASKLILLEMGSNSFSGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLG 376 (985)
Q Consensus 297 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~ 376 (985)
+.++..+.++++|+.|++++|.+.+ +|..+.++++|++|+++....... .......+..+++|+.|+++
T Consensus 210 --------~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~~~~L~~L~l~ 278 (592)
T 3ogk_B 210 --------KDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIG--MPEKYMNLVFPRKLCRLGLS 278 (592)
T ss_dssp --------HHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTT--CTTSSSCCCCCTTCCEEEET
T ss_pred --------HHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccc--hHHHHHHhhccccccccCcc
Confidence 1122222334444444444444443 334444445555555443111100 00111234455556666665
Q ss_pred CCCCCccCCCCccchhhcccceeccccccccccC-CcCCCCCCccEEEccCCCCCC-CCCccccccccccceecc-----
Q 001988 377 GNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIP-KAIGNLSNLIVLSLGGNNLSG-SIPVTFGGLQKLQGLDLA----- 449 (985)
Q Consensus 377 ~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls----- 449 (985)
++.. +.+|..+..++ +|++|++++|.+++... ..+..+++|++|+++ +.+.+ .++..+..+++|++|+++
T Consensus 279 ~~~~-~~l~~~~~~~~-~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~ 355 (592)
T 3ogk_B 279 YMGP-NEMPILFPFAA-QIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADE 355 (592)
T ss_dssp TCCT-TTGGGGGGGGG-GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCS
T ss_pred ccch-hHHHHHHhhcC-CCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccc
Confidence 5422 23444444444 56666666666543322 234566777777777 33332 233334556777777777
Q ss_pred ------cccccCC-chhhhhhccCCCeEEccCCccccccCCCCcC-cCcCceEeec----cceeeee-----cCCCccCc
Q 001988 450 ------FNKLAGS-IPDEICLLSRLNELDLNGNKISGSISSCLGN-LTSLQYLNLG----SNRFTFV-----IPSTFWNL 512 (985)
Q Consensus 450 ------~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~----~N~l~~~-----~p~~~~~l 512 (985)
.|.+++. ++.....+++|++|+++.|++++..+..+.. +++|+.|+++ .|++++. ++..+.++
T Consensus 356 ~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~ 435 (592)
T 3ogk_B 356 QGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435 (592)
T ss_dssp STTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC
T ss_pred cccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC
Confidence 3555532 2222345677777777777777655555544 6777777775 5666653 33335567
Q ss_pred cceeEEeecCC--cccCCcccccc-CCCcccEEEccCCccCcc-Cchhhcccccceeeeeecceeccc-hhhhhhccccc
Q 001988 513 KDILSFDISSN--LLDGPISLAIG-NLKAVVGIDLSRNNLSGN-IPTTLEGLKSLQNISLAYNRLEGP-IPESFGNMTSL 587 (985)
Q Consensus 513 ~~L~~L~ls~N--~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L 587 (985)
++|++|+++++ .+++.....+. .+++|+.|++++|++++. ++..+.++++|++|+|++|.+++. ++..+..+++|
T Consensus 436 ~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L 515 (592)
T 3ogk_B 436 KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSL 515 (592)
T ss_dssp TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSC
T ss_pred CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCcc
Confidence 77888888643 35443333333 377888888888888763 455567788899999999988754 44555678899
Q ss_pred CeEecCCCcccCCCCccc-ccccccccccccccc
Q 001988 588 ESLDLSNNKISGSIPVSF-EKLSYLKELNLSFNK 620 (985)
Q Consensus 588 ~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~ls~N~ 620 (985)
++|+|++|++++.--..+ ..++.+....+..++
T Consensus 516 ~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~~ 549 (592)
T 3ogk_B 516 RYLWVQGYRASMTGQDLMQMARPYWNIELIPSRR 549 (592)
T ss_dssp CEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC-
T ss_pred CeeECcCCcCCHHHHHHHHHhCCCcEEEEecCcc
Confidence 999999999886533333 355666665555543
No 301
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=2.4e-30 Score=290.87 Aligned_cols=275 Identities=17% Similarity=0.191 Sum_probs=222.3
Q ss_pred eEeccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhcccceeccccccccccCCcCCCCCCccEE
Q 001988 343 LFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVL 422 (985)
Q Consensus 343 ~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 422 (985)
..++++|.++.++... .++|++|++++|.+++..+..+..++ +|++|++++|++++..|.+|..+++|++|
T Consensus 35 ~c~~~~~~l~~iP~~~--------~~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGL--------TEAVKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EEECCSTTCSSCCTTC--------CTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred EeeCCCCCcccccccc--------cccCcEEECCCCcCcccCHHHhccCC-CCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 3455555555554321 13677777777777765555666666 78888888888887778888999999999
Q ss_pred EccCCCCCCCCCccccccccccceecccccccCCch-hhhhhccCCCeEEccCC-ccccccCCCCcCcCcCceEeeccce
Q 001988 423 SLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIP-DEICLLSRLNELDLNGN-KISGSISSCLGNLTSLQYLNLGSNR 500 (985)
Q Consensus 423 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 500 (985)
+|++|++++..+..|.++++|++|++++|++++..+ ..+..+++|++|++++| .+++..+..|.++++|++|++++|+
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 999999997777778899999999999999985444 47888999999999998 5777777889999999999999999
Q ss_pred eeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccCchhhc---ccccceeeeeecceecc--
Q 001988 501 FTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLE---GLKSLQNISLAYNRLEG-- 575 (985)
Q Consensus 501 l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~-- 575 (985)
+++..|..|..+++|++|++++|++....+..+..+++|+.|++++|++++..+..+. ....++.++|++|.+++
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 9998899999999999999999999876666667789999999999999987665544 35667788888888776
Q ss_pred --chhhhhhcccccCeEecCCCcccCCCCcc-ccccccccccccccccccCCCCC
Q 001988 576 --PIPESFGNMTSLESLDLSNNKISGSIPVS-FEKLSYLKELNLSFNKLKGEIPR 627 (985)
Q Consensus 576 --~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~ls~N~l~~~~p~ 627 (985)
.+|..+.++++|++|||++|+|+. +|.. |..+++|++|++++|++++.+|.
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred hhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 478899999999999999999994 5555 68999999999999999998874
No 302
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=99.97 E-value=2.3e-30 Score=283.94 Aligned_cols=212 Identities=20% Similarity=0.252 Sum_probs=177.1
Q ss_pred hcCccCC-ceeeccCceeEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHH-HhcCCCCeeeEEeeeec----CCce
Q 001988 725 TDNFAEN-NIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVI-KNIRHRNLVKIISSCSN----DDFK 797 (985)
Q Consensus 725 ~~~~~~~-~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il-~~l~h~niv~l~~~~~~----~~~~ 797 (985)
.++|... +.||+|+||.||+|... +++.||+|+++.. ..+.+|++++ +..+||||+++++++.. ....
T Consensus 16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 90 (299)
T 3m2w_A 16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 90 (299)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc-----HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceE
Confidence 3566666 78999999999999874 7899999998643 5677899988 55589999999999876 6678
Q ss_pred EEEEeccCCCChHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcC---CCcEEEecccCc
Q 001988 798 ALVLEYMSNGSLEDCLHSSN-CALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDE---DMVAHLSDFGMA 873 (985)
Q Consensus 798 ~lv~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~---~~~~kl~DfGla 873 (985)
++||||+++|+|.+++.... ..+++..+..++.|++.||+|| |++||+||||||+||+++. ++.+||+|||++
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~l---H~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a 167 (299)
T 3m2w_A 91 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYL---HSINIAHRDVKPENLLYTSKRPNAILKLTDFGFA 167 (299)
T ss_dssp EEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHH---HHTTEECCCCSGGGEEESSSSTTCCEEECCCTTC
T ss_pred EEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH---HhCCcccCCCCHHHEEEecCCCCCcEEEeccccc
Confidence 99999999999999998763 4689999999999999999999 7899999999999999998 789999999998
Q ss_pred eeccCCCCcceecccccccccccccccccCccchhhhcccccccchhhhcccccccCcchh-------------------
Q 001988 874 KLLSGEDESTMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKH------------------- 934 (985)
Q Consensus 874 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~------------------- 934 (985)
.... +..++.++|+ |++|+++++++++..+......
T Consensus 168 ~~~~------------------------~~~~~~~~Di-wslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 222 (299)
T 3m2w_A 168 KETT------------------------GEKYDKSCDM-WSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFP 222 (299)
T ss_dssp EECT------------------------TCGGGGHHHH-HHHHHHHHHHHHSSCSCCC-------CCSCCSSCTTCCSSC
T ss_pred cccc------------------------cccCCchhhH-HHHHHHHHHHHHCCCCCCCCcchhhhHHHHHHHhhccccCC
Confidence 7642 1346678999 9999999999998776532210
Q ss_pred hhhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 001988 935 FAAKEQCLLSIFSLALECTMESPEKRIDAKDTITR 969 (985)
Q Consensus 935 ~~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~~ 969 (985)
......+++++.+++.+||..||.+||++.|+++.
T Consensus 223 ~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~h 257 (299)
T 3m2w_A 223 NPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 257 (299)
T ss_dssp HHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred chhcccCCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 01113467889999999999999999999999873
No 303
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=99.97 E-value=2.1e-31 Score=305.44 Aligned_cols=233 Identities=14% Similarity=0.153 Sum_probs=179.1
Q ss_pred hcCccCCceeeccCceeEEEEEEc-CCcEEEEEEeccCCcc---hHHHHHHHHHHHHhcCC-CCeee-------------
Q 001988 725 TDNFAENNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCAS---TLKSFEAECEVIKNIRH-RNLVK------------- 786 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~~---~~~~~~~E~~il~~l~h-~niv~------------- 786 (985)
...|...+.||+|+||.||+|++. +|+.||||++...... ..+.+++|+.+++.++| ++...
T Consensus 77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 156 (413)
T 3dzo_A 77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 156 (413)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEE
T ss_pred ceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhh
Confidence 455778899999999999999954 7999999998844322 35778999999999987 32111
Q ss_pred --------EEeeeec-----CCceEEEEeccCCCChHHHhh------cCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCe
Q 001988 787 --------IISSCSN-----DDFKALVLEYMSNGSLEDCLH------SSNCALNIFCRLNIMIDIASALEYLHFGHSTPI 847 (985)
Q Consensus 787 --------l~~~~~~-----~~~~~lv~e~~~~gsL~~~l~------~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~i 847 (985)
+..++.. ....+++|+++ +++|.+++. .....+++..+..++.|+++||+|| |++||
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~L---H~~~i 232 (413)
T 3dzo_A 157 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASL---HHYGL 232 (413)
T ss_dssp EECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHH---HHTTE
T ss_pred cccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHH---HhCCc
Confidence 1111111 12356777766 689999884 2234577889999999999999999 78999
Q ss_pred EeCCCCCCCEEEcCCCcEEEecccCceeccCCCCcceeccccccccccccccc----------ccCccchhhhccccccc
Q 001988 848 IHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEI----------FVGELSLKRWVNDLLPV 917 (985)
Q Consensus 848 vHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~~dv~~~~g~ 917 (985)
+||||||+|||++.++.+||+|||+++..... ....+| +.|+|||.+ ....++.++|+ |++|+
T Consensus 233 iHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~-----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~Dv-wSlGv 305 (413)
T 3dzo_A 233 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS-----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDT-WTLGL 305 (413)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTEE-----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHH-HHHHH
T ss_pred ccCCcccceEEEecCCeEEEEeccceeecCCc-----cccCCC-CceeCchhhhccccccccccCcCCCchhhH-HHHHH
Confidence 99999999999999999999999999875321 344567 999999998 55668899999 99999
Q ss_pred chhhhcccccccCcchhh-------hhHHHHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 001988 918 SLVEVVDKSLLSGEEKHF-------AAKEQCLLSIFSLALECTMESPEKRIDAKDTIT 968 (985)
Q Consensus 918 ~~~~i~~~~~~~~~~~~~-------~~~~~~~~~l~~l~~~cl~~~P~~RPt~~ev~~ 968 (985)
+++++++++.++...... .....+++++.+++.+||..||++||++.|+++
T Consensus 306 il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~~l~ 363 (413)
T 3dzo_A 306 AIYWIWCADLPNTDDAALGGSEWIFRSCKNIPQPVRALLEGFLRYPKEDRLLPLQAME 363 (413)
T ss_dssp HHHHHHHSSCCCCTTGGGSCSGGGGSSCCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred HHHHHHHCCCCCCCcchhhhHHHHHhhcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 999999988766543211 111235678999999999999999999877754
No 304
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=7e-32 Score=299.34 Aligned_cols=278 Identities=21% Similarity=0.237 Sum_probs=207.8
Q ss_pred cCCCCcccCCCCC--CCCcceeeeEEEeCCCCeEEEEEecCCcccccCchhc--ccccccceecccCCcCCCCCCccccc
Q 001988 44 YDPTNLLGTNWTS--NASICSWIGIICDVNSHKVTTLNLSSFNLQGTIPPEI--ANLSSLKSLDLSHNKLSSNIPSSIFT 119 (985)
Q Consensus 44 ~~~~~~~~s~w~~--~~~~c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~l--~~l~~L~~L~L~~n~l~~~~p~~~~~ 119 (985)
.|+..++.+ |.. ..|+|.|.++-|+............+.... .++..+ ...+.++.|+|++|.++ .+|..++.
T Consensus 26 ~~~~~aLl~-~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~-~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~ 102 (328)
T 4fcg_A 26 RPYHDVLSQ-WQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFR 102 (328)
T ss_dssp CCHHHHHHH-HHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHH-HHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGG
T ss_pred chHHHHHHH-HHHhccCCchhhhhhhcccccccccccccCCcchh-hhHHHHhcccccceeEEEccCCCch-hcChhhhh
Confidence 355555665 764 357899998888432221000111111111 122222 23578999999999998 78888988
Q ss_pred CCCCcEEEccCcccCCCCccccccCCccceeeeccccccCCCChhHhhhccccceecccCccccccCCcccCCCCCceEE
Q 001988 120 MSTLKVLYLMDNQLSGSLSSFTFNTSSILDIRLSKNKLSGKLPENICNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQEL 199 (985)
Q Consensus 120 l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~g~lp~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 199 (985)
+++|++|+|++|.++ .+|..+ +.+++|++|+|++|.++ .+|+.++++++|++|
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~-------------------------~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTM-------------------------QQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCG-------------------------GGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred CCCCCEEECCCCCcc-chhHHH-------------------------hccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 999999999888887 444444 44555666666666665 556666666666666
Q ss_pred EcccccCCCccccccc---------cccccceEeeccccccCCchhhhcCCCCCCEEEecCCcCcccCcccccCCCCCCE
Q 001988 200 HLGYNNLSGAIPKEIG---------NLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGFNNLTGVVPATIFNMSTLKE 270 (985)
Q Consensus 200 ~L~~N~l~~~~p~~~~---------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 270 (985)
+|++|++.+.+|..++ ++++|++|++++|+++ .+|..++.+++|++|+|++|++++ +|..+..+++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence 6666666666666554 4899999999999998 888899999999999999999995 6667999999999
Q ss_pred EEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccEEEccCcccccccCCcccCCCCCceEeccCCc
Q 001988 271 IFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMGSNSFSGFIPSAIGNLRNLKLFDIFFNN 350 (985)
Q Consensus 271 L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 350 (985)
|+|++|++.+.+|..+ ..+++|++|+|++|++.+.+|..+.++++|+.|++++|.+.+.+|..++++++|+.+++..+.
T Consensus 234 L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIF-GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EECTTCTTCCBCCCCT-TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EECcCCcchhhhHHHh-cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 9999999998888765 478999999999999999999999999999999999999999999999999999999888776
Q ss_pred ccCC
Q 001988 351 LTSS 354 (985)
Q Consensus 351 l~~~ 354 (985)
+...
T Consensus 313 ~~~l 316 (328)
T 4fcg_A 313 QAQL 316 (328)
T ss_dssp SCC-
T ss_pred HHHH
Confidence 5543
No 305
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=5.1e-31 Score=290.70 Aligned_cols=265 Identities=18% Similarity=0.172 Sum_probs=145.7
Q ss_pred CCCCCCcceeeeEEEeCCCCeEEEEEecCCcccccCchhcccccccceecccCCcC-CCCCCcccc-------cCCCCcE
Q 001988 54 WTSNASICSWIGIICDVNSHKVTTLNLSSFNLQGTIPPEIANLSSLKSLDLSHNKL-SSNIPSSIF-------TMSTLKV 125 (985)
Q Consensus 54 w~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~l~~l~~L~~L~L~~n~l-~~~~p~~~~-------~l~~L~~ 125 (985)
|.....|+.|..+.......+++.+++++|++ .+|..+... |+.|+|++|.+ .+.+|..++ .+++|++
T Consensus 24 ~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~ 99 (312)
T 1wwl_A 24 WSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQE 99 (312)
T ss_dssp GGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCE
T ss_pred hHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccE
Confidence 66555666666554333334566666777776 566655544 67777777776 345666555 5667777
Q ss_pred EEccCcccCCCCcccc--ccCCccceeeeccccccCCCChhHhhhc-----cccceecccCccccccCCcccCCCCCceE
Q 001988 126 LYLMDNQLSGSLSSFT--FNTSSILDIRLSKNKLSGKLPENICNHL-----RYLKHLFLRENMFYGKIPSSLSKCKQLQE 198 (985)
Q Consensus 126 L~Ls~n~l~~~~~~~~--~~~~~L~~L~ls~n~l~g~lp~~~~~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 198 (985)
|+|++|++++.+|..+ ..+++|++|+|++|++++. |..+ +.+ ++|++|+|++|++++..|..|+++++|++
T Consensus 100 L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~-~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 177 (312)
T 1wwl_A 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWL-AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST 177 (312)
T ss_dssp EEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHH-HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCE
T ss_pred EEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHH-HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCE
Confidence 7777777766666544 5566666666666666654 4333 334 55555555555555555555555555555
Q ss_pred EEcccccCCCc--ccccc--ccccccceEeeccccccC--Cch-hhhcCCCCCCEEEecCCcCcccCcccccCCCCCCEE
Q 001988 199 LHLGYNNLSGA--IPKEI--GNLTVLQRISLINNKLHG--EIP-QEIGYLQNLDVLQLGFNNLTGVVPATIFNMSTLKEI 271 (985)
Q Consensus 199 L~L~~N~l~~~--~p~~~--~~l~~L~~L~L~~N~l~~--~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 271 (985)
|+|++|++.+. +|..+ +++++|++|++++|++++ .++ ..+..+++|++|+|++|++++..
T Consensus 178 L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------------- 244 (312)
T 1wwl_A 178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA------------- 244 (312)
T ss_dssp EECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC-------------
T ss_pred EECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc-------------
Confidence 55555555543 22222 455555555555555542 111 22334455555555555555444
Q ss_pred EccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccEEEccCcccccccCCcccCCCCCceEeccCCcc
Q 001988 272 FLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMGSNSFSGFIPSAIGNLRNLKLFDIFFNNL 351 (985)
Q Consensus 272 ~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 351 (985)
|...+..+++|++|+|++|+|+ .+|..+. ++|+.|++++|++++. |. +..+++|++|++++|++
T Consensus 245 -----------~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 245 -----------GAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp -----------CCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTT
T ss_pred -----------chhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCC
Confidence 3222233445555555555554 4444443 5555666666666544 43 56666666666666666
Q ss_pred cC
Q 001988 352 TS 353 (985)
Q Consensus 352 ~~ 353 (985)
++
T Consensus 309 ~~ 310 (312)
T 1wwl_A 309 LD 310 (312)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 306
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=3.4e-31 Score=292.14 Aligned_cols=252 Identities=20% Similarity=0.221 Sum_probs=207.8
Q ss_pred cccccccceecccCCcCCCCCCcccccCCCCcEEEccCcccCCCCccccccCCccceeeeccccccCCCChhHh------
Q 001988 93 IANLSSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQLSGSLSSFTFNTSSILDIRLSKNKLSGKLPENIC------ 166 (985)
Q Consensus 93 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~g~lp~~~~------ 166 (985)
++..++|++|++++|.+ .+|..+... |++|+|++|+++ .+.+|..+.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~-----------------------~~~~~~~~~~~~~~~ 91 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVR-----------------------AARIPSRILFGALRV 91 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEE-----------------------EEECBHHHHHHHHHH
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--Hhhccccccccc-----------------------CCCcCHHHHHHHHHh
Confidence 45566777777777777 566655443 555555555553 335565552
Q ss_pred hhccccceecccCccccccCCccc--CCCCCceEEEcccccCCCccccccccc-----cccceEeeccccccCCchhhhc
Q 001988 167 NHLRYLKHLFLRENMFYGKIPSSL--SKCKQLQELHLGYNNLSGAIPKEIGNL-----TVLQRISLINNKLHGEIPQEIG 239 (985)
Q Consensus 167 ~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~ 239 (985)
.++++|++|+|++|.+++.+|..+ +.+++|++|+|++|++++. |..++.+ ++|++|++++|++++..|..|+
T Consensus 92 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 92 LGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp HTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred cCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 158899999999999999999887 8999999999999999977 8888888 8999999999999988889999
Q ss_pred CCCCCCEEEecCCcCccc--Ccccc--cCCCCCCEEEccCCcCcc--cCChhhhhcCCCCcEEEecCccCCCcCC-cccc
Q 001988 240 YLQNLDVLQLGFNNLTGV--VPATI--FNMSTLKEIFLYNNSLSG--SLPSRIDLALPNLEFLNLGINSFSGTIP-SSIT 312 (985)
Q Consensus 240 ~l~~L~~L~Ls~N~l~~~--~p~~l--~~l~~L~~L~L~~N~l~~--~~p~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~ 312 (985)
.+++|++|+|++|++.+. .|..+ ..+++|++|+|++|++++ .++..++..+++|++|+|++|++++.+| ..+.
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 999999999999998875 34445 889999999999999983 4555666788999999999999998875 5667
Q ss_pred CCCCccEEEccCcccccccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCc
Q 001988 313 NASKLILLEMGSNSFSGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDG 382 (985)
Q Consensus 313 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~ 382 (985)
.+++|++|+|++|+++ .+|..+. ++|++|++++|++++.+. +..+++|++|++++|++++
T Consensus 251 ~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~p~-------~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPS-------PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSCCC-------TTTSCEEEEEECTTCTTTC
T ss_pred hcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCChh-------HhhCCCCCEEeccCCCCCC
Confidence 7899999999999999 6777776 899999999999998732 5688999999999999985
No 307
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.6e-29 Score=278.27 Aligned_cols=251 Identities=23% Similarity=0.270 Sum_probs=190.1
Q ss_pred cEEEecCCCCCccCCCCccchhhcccceeccccccccccCCcCCCCCCccEEEccCCCCCCC--CCccccccccccceec
Q 001988 371 RYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGS--IPVTFGGLQKLQGLDL 448 (985)
Q Consensus 371 ~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L 448 (985)
+.++.+++.++ .+|..+. .+|++|++++|+++...+..|..+++|++|+|++|+++.. .+..+.++++|++|+|
T Consensus 10 ~~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 34555555554 3343332 2577777777777755555677788888888888887633 2556667788888888
Q ss_pred ccccccCCchhhhhhccCCCeEEccCCccccccC-CCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCcccC
Q 001988 449 AFNKLAGSIPDEICLLSRLNELDLNGNKISGSIS-SCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDG 527 (985)
Q Consensus 449 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 527 (985)
++|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+++..+..|.++++|++|++++|.+.+
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 888877 456667778888888888888876554 567788888888888888887777778888888888888888876
Q ss_pred -CccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCcccc
Q 001988 528 -PISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVSFE 606 (985)
Q Consensus 528 -~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 606 (985)
..|..+..+++|+.|++++|++++..|..|..+++|++|+|++|++++..+..+..+++|+.|||++|++++..|..+.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 5677788888888888888888877788888888888888888888877777788888888888888888888888888
Q ss_pred ccc-cccccccccccccCCCC
Q 001988 607 KLS-YLKELNLSFNKLKGEIP 626 (985)
Q Consensus 607 ~l~-~L~~L~ls~N~l~~~~p 626 (985)
.++ +|++|++++|++++..+
T Consensus 245 ~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCCTTCCEEECTTCCEECSGG
T ss_pred hhhccCCEEEccCCCeecccC
Confidence 874 88888888888887654
No 308
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=5.2e-29 Score=289.76 Aligned_cols=251 Identities=24% Similarity=0.290 Sum_probs=219.7
Q ss_pred ccEEEecCCCCCccCCCCccchhhcccceeccccccccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecc
Q 001988 370 LRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLA 449 (985)
Q Consensus 370 L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 449 (985)
.+.++.+++.++ .+|..+. .+++.|+|++|+|++..|..|.++++|++|+|++|+|+++.+..|.++++|++|+|+
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 456666666666 3555443 378888999999888888899999999999999999998888899999999999999
Q ss_pred cccccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCceEeecc-ceeeeecCCCccCccceeEEeecCCcccCC
Q 001988 450 FNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGS-NRFTFVIPSTFWNLKDILSFDISSNLLDGP 528 (985)
Q Consensus 450 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 528 (985)
+|+|++..+..|..+++|++|+|++|+|++..+..|.++++|++|++++ |.++.+.+..|.++++|++|++++|++++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 9999977777788899999999999999987778899999999999998 667777777899999999999999999876
Q ss_pred ccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCcccccc
Q 001988 529 ISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKL 608 (985)
Q Consensus 529 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 608 (985)
. .+..+++|+.|+|++|+|++..|..|.++++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..+..|..+
T Consensus 212 ~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 P--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp C--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred c--cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 3 58889999999999999999999999999999999999999999889999999999999999999998888889999
Q ss_pred ccccccccccccccCCCC
Q 001988 609 SYLKELNLSFNKLKGEIP 626 (985)
Q Consensus 609 ~~L~~L~ls~N~l~~~~p 626 (985)
++|+.|+|++|++.+...
T Consensus 290 ~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp TTCCEEECCSSCEECSTT
T ss_pred cCCCEEEccCCCcCCCCC
Confidence 999999999999987765
No 309
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=6.3e-29 Score=288.01 Aligned_cols=251 Identities=24% Similarity=0.290 Sum_probs=219.9
Q ss_pred ccEEEecCCCCCccCCCCccchhhcccceeccccccccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecc
Q 001988 370 LRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLA 449 (985)
Q Consensus 370 L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 449 (985)
.+.++.+++.++ .+|..+. .+++.|+|++|+|++..+..|.++++|++|+|++|+|+++.+.+|.++++|++|+|+
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 456666666666 4555443 368888899999888888899999999999999999998888899999999999999
Q ss_pred cccccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCceEeecc-ceeeeecCCCccCccceeEEeecCCcccCC
Q 001988 450 FNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGS-NRFTFVIPSTFWNLKDILSFDISSNLLDGP 528 (985)
Q Consensus 450 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 528 (985)
+|+|++..+..|..+++|++|+|++|+|++..+..|.++++|++|++++ |.++.+.+..|.++++|++|++++|+++.+
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 9999977777888999999999999999988888899999999999998 567767777899999999999999999866
Q ss_pred ccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCcccccc
Q 001988 529 ISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKL 608 (985)
Q Consensus 529 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 608 (985)
. .+..+++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|.++++|+.|+|++|+|++..+..|..+
T Consensus 201 ~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 201 P--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp C--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred c--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 4 48889999999999999999989999999999999999999999889999999999999999999998888889999
Q ss_pred ccccccccccccccCCCC
Q 001988 609 SYLKELNLSFNKLKGEIP 626 (985)
Q Consensus 609 ~~L~~L~ls~N~l~~~~p 626 (985)
++|+.|+|++|++.+...
T Consensus 279 ~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 279 HHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp TTCCEEECCSSCEECSST
T ss_pred cCCCEEEcCCCCccCCCC
Confidence 999999999999987654
No 310
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=4.7e-29 Score=274.47 Aligned_cols=278 Identities=20% Similarity=0.272 Sum_probs=189.6
Q ss_pred cEEEccCcccccccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhcccc
Q 001988 318 ILLEMGSNSFSGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLER 397 (985)
Q Consensus 318 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~ 397 (985)
+.++++++.++. +|..+. ++|++|++++|+++.++.. .+.++++|++|++++|+++..
T Consensus 10 ~~l~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~~i~~~-----~~~~l~~L~~L~L~~n~l~~~-------------- 67 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPTGIP--SSATRLELESNKLQSLPHG-----VFDKLTQLTKLSLSSNGLSFK-------------- 67 (306)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCCEEECCSSCCCCCCTT-----TTTTCTTCSEEECCSSCCCEE--------------
T ss_pred CEEEcCCCCccc-CCCCCC--CCCCEEECCCCccCccCHh-----HhhccccCCEEECCCCccCcc--------------
Confidence 355666666653 333222 4555555555555544432 134455555555555544411
Q ss_pred eeccccccccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCch-hhhhhccCCCeEEccCCc
Q 001988 398 LNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIP-DEICLLSRLNELDLNGNK 476 (985)
Q Consensus 398 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~ 476 (985)
+..+..+..+++|++|+|++|.++ .+|..|.++++|++|++++|++++..+ ..+..+++|++|++++|+
T Consensus 68 ---------~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 137 (306)
T 2z66_A 68 ---------GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137 (306)
T ss_dssp ---------EEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC
T ss_pred ---------cCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc
Confidence 112344555677777777777776 355567777777777777777775544 467777778888888887
Q ss_pred cccccCCCCcCcCcCceEeeccceeee-ecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccCch
Q 001988 477 ISGSISSCLGNLTSLQYLNLGSNRFTF-VIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPT 555 (985)
Q Consensus 477 l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 555 (985)
+++..+..+.++++|++|++++|.+++ ..|..|..+++|++|++++|++++..+..+..+++|+.|+|++|++++..+.
T Consensus 138 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh
Confidence 777777777777888888888887776 5677777788888888888888777777788888888888888888877777
Q ss_pred hhcccccceeeeeecceeccchhhhhhccc-ccCeEecCCCcccCCCC--ccccccccccccccccccccCCCCC
Q 001988 556 TLEGLKSLQNISLAYNRLEGPIPESFGNMT-SLESLDLSNNKISGSIP--VSFEKLSYLKELNLSFNKLKGEIPR 627 (985)
Q Consensus 556 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~ls~N~l~~~~p~ 627 (985)
.+..+++|++|+|++|++++..|..+..++ +|++|+|++|++++..+ .....+...+.+.+..|.+.+..|.
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 788888888888888888887888888874 78888888888876432 1133455566677777777777665
No 311
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=3.5e-29 Score=298.40 Aligned_cols=282 Identities=26% Similarity=0.347 Sum_probs=176.1
Q ss_pred CCCCCCCcceeeeEEEe------CCCCeEEEEEecCCcccccCchhcccccccceecccCCcCCCCCCcccccCCCCcEE
Q 001988 53 NWTSNASICSWIGIICD------VNSHKVTTLNLSSFNLQGTIPPEIANLSSLKSLDLSHNKLSSNIPSSIFTMSTLKVL 126 (985)
Q Consensus 53 ~w~~~~~~c~w~gv~c~------~~~~~v~~l~L~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 126 (985)
.|..+.+||.|+|..|. .....++.|++++++++ .+|..+. ++|++|+|++|.|+ .+|. .+++|++|
T Consensus 14 ~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L 86 (622)
T 3g06_A 14 AWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTL 86 (622)
T ss_dssp HHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEE
T ss_pred HHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEE
Confidence 38878899999775432 12234788999999998 7887776 78999999999988 4676 57889999
Q ss_pred EccCcccCCCCccccccCCccceeeeccccccCCCChhHhhhccccceecccCccccccCCcccCCCCCceEEEcccccC
Q 001988 127 YLMDNQLSGSLSSFTFNTSSILDIRLSKNKLSGKLPENICNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNL 206 (985)
Q Consensus 127 ~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~g~lp~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l 206 (985)
+|++|++++. |. .+++|++|++++|++++ +|. .+++|++|++++|+++ .+|.. +++|++|+|++|++
T Consensus 87 ~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-l~~----~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l 153 (622)
T 3g06_A 87 EVSGNQLTSL-PV---LPPGLLELSIFSNPLTH-LPA----LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQL 153 (622)
T ss_dssp EECSCCCSCC-CC---CCTTCCEEEECSCCCCC-CCC----CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCC
T ss_pred EcCCCcCCcC-CC---CCCCCCEEECcCCcCCC-CCC----CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcC
Confidence 9999988753 33 55777777777777773 454 3566777777777776 35553 36677777777777
Q ss_pred CCccccccccccccceEeeccccccCCchhhhcCCCCCCEEEecCCcCcccCcccccCCCCCCEEEccCCcCcccCChhh
Q 001988 207 SGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRI 286 (985)
Q Consensus 207 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 286 (985)
++ +|.. +++|+.|++++|++++ +| ..+++|+.|++++|++++ +|.. +++|+.|++++|.++ .+|.
T Consensus 154 ~~-l~~~---~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~-- 218 (622)
T 3g06_A 154 AS-LPAL---PSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA-- 218 (622)
T ss_dssp SC-CCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC--
T ss_pred CC-cCCc---cCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC--
Confidence 63 4432 3456667777777763 44 345667777777777664 3332 356666666666666 4443
Q ss_pred hhcCCCCcEEEecCccCCCcCCccccCCCCccEEEccCcccccccCCcccCCCCCceEeccCCcccCCCCcccccccccc
Q 001988 287 DLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMGSNSFSGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLAN 366 (985)
Q Consensus 287 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~ 366 (985)
.+++|+.|+|++|+|++ +| ..+++|+.|++++|+|+. +|. .+++|+.|+|++|+|+.++. .+.+
T Consensus 219 --~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~~lp~------~l~~ 282 (622)
T 3g06_A 219 --LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLTRLPE------SLIH 282 (622)
T ss_dssp --CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCCSCCG------GGGG
T ss_pred --CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCCcCCH------HHhh
Confidence 23566666666666654 33 233555555666655553 232 34455555555555553322 2344
Q ss_pred cCcccEEEecCCCCCccCC
Q 001988 367 CKKLRYLGLGGNPLDGFLP 385 (985)
Q Consensus 367 l~~L~~L~L~~N~l~~~~p 385 (985)
+++|+.|+|++|++++..|
T Consensus 283 l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 283 LSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp SCTTCEEECCSCCCCHHHH
T ss_pred ccccCEEEecCCCCCCcCH
Confidence 4555555555555544333
No 312
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=8.9e-29 Score=269.25 Aligned_cols=252 Identities=22% Similarity=0.253 Sum_probs=193.8
Q ss_pred cEEEecCCCCCccCCCCccchhhcccceeccccccccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceeccc
Q 001988 371 RYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAF 450 (985)
Q Consensus 371 ~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 450 (985)
+.++.+++.++. +|..+ +.+|++|++++|.+++..+..|..+++|++|+|++|.+++..|.+|.++++|++|++++
T Consensus 14 ~~~~c~~~~l~~-ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSS-CCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCccc-CCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 455555555552 34332 23677777777777777677778888888888888888777777788888888888888
Q ss_pred cc-ccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCcccCCc
Q 001988 451 NK-LAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPI 529 (985)
Q Consensus 451 N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~ 529 (985)
|. +....|..+..+++|++|++++|++++..+..|.++++|++|++++|+++++.+..|..+++|++|++++|++++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 86 77666777778888888888888888777777888888888888888888777777888888888888888888777
Q ss_pred cccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCccccccc
Q 001988 530 SLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKLS 609 (985)
Q Consensus 530 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 609 (985)
+..+..+++|+.|++++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++....+.. .-..
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~ 248 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWA 248 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHH
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHH
Confidence 777888888888888888888888888888888888888888888877778888888888888888887644322 2334
Q ss_pred cccccccccccccCCCCC
Q 001988 610 YLKELNLSFNKLKGEIPR 627 (985)
Q Consensus 610 ~L~~L~ls~N~l~~~~p~ 627 (985)
.++.+..+.|.+.+..|.
T Consensus 249 ~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 249 WLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp HHHHCCSEECCCBEEESG
T ss_pred HHHhcccccCccccCCch
Confidence 567777888888888875
No 313
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=3.2e-28 Score=264.80 Aligned_cols=267 Identities=22% Similarity=0.161 Sum_probs=203.4
Q ss_pred ceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhcccceeccccccccccCCcCCCCCCccE
Q 001988 342 KLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIV 421 (985)
Q Consensus 342 ~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 421 (985)
+.++.+.+.++.++.. -.++|++|++++|.+++..+..+..++ +|++|++++|.+++..|.+|..+++|++
T Consensus 14 ~~~~c~~~~l~~ip~~--------~~~~l~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 84 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG--------IPAASQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLARIDAAAFTGLALLEQ 84 (285)
T ss_dssp CEEECCSSCCSSCCTT--------CCTTCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred eEEEcCcCCcccCCcC--------CCCCceEEEeeCCcCCccCHHHcccCC-CCCEEECCCCccceeCHhhcCCccCCCE
Confidence 3455555555544432 124667777777777666666666666 6777777777777777788888888888
Q ss_pred EEccCCC-CCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCceEeeccce
Q 001988 422 LSLGGNN-LSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNR 500 (985)
Q Consensus 422 L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 500 (985)
|++++|. ++...|..|..+++|++|++++|++++..|..+..+++|++|++++|++++..+..|..+++|++|++++|+
T Consensus 85 L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence 8888886 777767888888888888888888887777788888888888888888887777778888888888888888
Q ss_pred eeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhh
Q 001988 501 FTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPES 580 (985)
Q Consensus 501 l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 580 (985)
++++.+..|.++++|+.|++++|.+.+..+..+..+++|+.|++++|+|++..+..+..+++|++|+|++|.+....+..
T Consensus 165 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~ 244 (285)
T 1ozn_A 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH
Confidence 88877778888888888888888888888888888999999999999999877778889999999999999998643321
Q ss_pred hhcccccCeEecCCCcccCCCCccccc--ccccccccccc
Q 001988 581 FGNMTSLESLDLSNNKISGSIPVSFEK--LSYLKELNLSF 618 (985)
Q Consensus 581 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~--l~~L~~L~ls~ 618 (985)
.-...++.+..+.|.+....|..+.+ +..++..++++
T Consensus 245 -~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~ 283 (285)
T 1ozn_A 245 -PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283 (285)
T ss_dssp -HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCC
T ss_pred -HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhcc
Confidence 22244666678888888888877654 34444444443
No 314
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=5e-30 Score=300.00 Aligned_cols=234 Identities=22% Similarity=0.236 Sum_probs=141.4
Q ss_pred cccEEEecCCCCCccCCCCccchhhcccceeccccccccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceec
Q 001988 369 KLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDL 448 (985)
Q Consensus 369 ~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 448 (985)
+|++|+|++|.+++..|..+..++ +|+.|+|++|.+++..| +..+++|++|+|++|.|++..+ .++|+.|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 455555555555544444444444 45555555555554443 5556666666666666653322 256666666
Q ss_pred ccccccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCceEeeccceeeeecCCCcc-CccceeEEeecCCcccC
Q 001988 449 AFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFW-NLKDILSFDISSNLLDG 527 (985)
Q Consensus 449 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~ls~N~l~~ 527 (985)
++|.|++..+. .+++|+.|+|++|.+++..|..+.++++|++|+|++|.+++..|..|. .+++|+.|++++|.|++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 66666654432 245666666666666666666666666666666666666666665554 56666666666666665
Q ss_pred CccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCccc-CCCCcccc
Q 001988 528 PISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKIS-GSIPVSFE 606 (985)
Q Consensus 528 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~ 606 (985)
..+ ...+++|+.|+|++|+|++..| .+..+++|+.|+|++|+|++ +|..+..+++|+.|+|++|.+. +.+|..+.
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 VKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred ccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 532 2346667777777777765433 36667777777777777774 5656667777777777777776 55566666
Q ss_pred ccccccccccc
Q 001988 607 KLSYLKELNLS 617 (985)
Q Consensus 607 ~l~~L~~L~ls 617 (985)
.++.|+.++++
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 66777766665
No 315
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3.9e-27 Score=272.91 Aligned_cols=247 Identities=24% Similarity=0.268 Sum_probs=134.8
Q ss_pred cceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEEEecC
Q 001988 172 LKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGF 251 (985)
Q Consensus 172 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 251 (985)
.+.++.+++.++ .+|..+. +++++|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 344555555555 4555443 4555555555555554445555555555555555555544445555555555555555
Q ss_pred CcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccEEEccCc-ccccc
Q 001988 252 NNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMGSN-SFSGF 330 (985)
Q Consensus 252 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~ 330 (985)
|++++..+..|..+++|++|+|++|++ ++..+..|.++++|+.|++++| .+...
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i-------------------------~~~~~~~~~~l~~L~~L~l~~~~~l~~i 176 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPI-------------------------ESIPSYAFNRIPSLRRLDLGELKRLSYI 176 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCC-------------------------CEECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcc-------------------------cccCHHHhhhCcccCEeCCCCCCCccee
Confidence 555544444444444444444444444 4334444555555555555553 33333
Q ss_pred cCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhcccceeccccccccccC
Q 001988 331 IPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIP 410 (985)
Q Consensus 331 ~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~ 410 (985)
.+..|.++++|++|++++|+++.++. +..+++|++|+|++|++++ ..|
T Consensus 177 ~~~~~~~l~~L~~L~L~~n~l~~~~~-------~~~l~~L~~L~Ls~N~l~~-------------------------~~~ 224 (440)
T 3zyj_A 177 SEGAFEGLSNLRYLNLAMCNLREIPN-------LTPLIKLDELDLSGNHLSA-------------------------IRP 224 (440)
T ss_dssp CTTTTTTCSSCCEEECTTSCCSSCCC-------CTTCSSCCEEECTTSCCCE-------------------------ECT
T ss_pred CcchhhcccccCeecCCCCcCccccc-------cCCCcccCEEECCCCccCc-------------------------cCh
Confidence 34456666667777777666664431 3445555555555555554 444
Q ss_pred CcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCCccc
Q 001988 411 KAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKIS 478 (985)
Q Consensus 411 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 478 (985)
..|..+++|++|+|++|+|++..+.+|.++++|+.|+|++|+|++..+..+..+++|+.|+|++|.+.
T Consensus 225 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 45555555555555555555555555555566666666666665555555555666666666666554
No 316
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.2e-27 Score=274.64 Aligned_cols=247 Identities=25% Similarity=0.282 Sum_probs=147.5
Q ss_pred cceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEEEecC
Q 001988 172 LKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGF 251 (985)
Q Consensus 172 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 251 (985)
...++.+++.++ .+|..+. ++|++|+|++|+|++..|..|+++++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 455666666666 5666554 4667777777777766666666666677777776666666566666666666666666
Q ss_pred CcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccEEEccC-cccccc
Q 001988 252 NNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMGS-NSFSGF 330 (985)
Q Consensus 252 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~ 330 (985)
|++++..+..|.++++|++|+|++|+++ .+|. ..|.++++|+.|++++ |.+...
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~------------------------~~~~~l~~L~~L~l~~~~~l~~i 187 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPS------------------------YAFNRVPSLMRLDLGELKKLEYI 187 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCC-EECT------------------------TTTTTCTTCCEEECCCCTTCCEE
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcc-eeCH------------------------hHHhcCCcccEEeCCCCCCcccc
Confidence 6666555555555666666666555555 3333 3444445555555554 233333
Q ss_pred cCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhcccceeccccccccccC
Q 001988 331 IPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIP 410 (985)
Q Consensus 331 ~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~ 410 (985)
.+..|.++++|++|++++|+++..+ .+..+++|++|+|++|+++ +..|
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~~-------~~~~l~~L~~L~Ls~N~l~-------------------------~~~~ 235 (452)
T 3zyi_A 188 SEGAFEGLFNLKYLNLGMCNIKDMP-------NLTPLVGLEELEMSGNHFP-------------------------EIRP 235 (452)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSSCC-------CCTTCTTCCEEECTTSCCS-------------------------EECG
T ss_pred ChhhccCCCCCCEEECCCCcccccc-------cccccccccEEECcCCcCc-------------------------ccCc
Confidence 3345666666666666666665442 1344455555555555554 4445
Q ss_pred CcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCCccc
Q 001988 411 KAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKIS 478 (985)
Q Consensus 411 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 478 (985)
..|..+++|++|+|++|++++..+.+|.++++|+.|+|++|+|++..+..+..+++|+.|+|++|.+.
T Consensus 236 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 55555666666666666666666666666666666666666666555555566666666666666654
No 317
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=9e-29 Score=273.38 Aligned_cols=236 Identities=19% Similarity=0.195 Sum_probs=118.7
Q ss_pred CCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEEEecCCcCcccCcccccCCCCCCEEE
Q 001988 193 CKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGFNNLTGVVPATIFNMSTLKEIF 272 (985)
Q Consensus 193 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 272 (985)
+++|++|+|++|++++..|..|+++++|++|+|++|++++..| +..+++|++|++++|++++.. ..++|++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEE
Confidence 3344444444444444333444444444444444444443322 444455555555555544321 124555555
Q ss_pred ccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccEEEccCcccccccCCcc-cCCCCCceEeccCCcc
Q 001988 273 LYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMGSNSFSGFIPSAI-GNLRNLKLFDIFFNNL 351 (985)
Q Consensus 273 L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~L~~N~l 351 (985)
+++|++++..+. .+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+ ..+++|++|++++|++
T Consensus 106 l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 106 AANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp CCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred CCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 555555532221 24566666666666666666666667777777777777776666555 3567777777777766
Q ss_pred cCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhcccceeccccccccccCCcCCCCCCccEEEccCCCCC-
Q 001988 352 TSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLS- 430 (985)
Q Consensus 352 ~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~- 430 (985)
+..+. ...+++|++|++++|++++. |..+..++ +|+.|++++|+|+ .+|..+..+++|++|++++|.+.
T Consensus 182 ~~~~~-------~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~-~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 182 YDVKG-------QVVFAKLKTLDLSSNKLAFM-GPEFQSAA-GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp CEEEC-------CCCCTTCCEEECCSSCCCEE-CGGGGGGT-TCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH
T ss_pred ccccc-------ccccccCCEEECCCCcCCcc-hhhhcccC-cccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC
Confidence 65422 22345566666666655532 22233333 3444444444444 23334444444444444444444
Q ss_pred CCCCccccccccccceecc
Q 001988 431 GSIPVTFGGLQKLQGLDLA 449 (985)
Q Consensus 431 ~~~~~~~~~l~~L~~L~Ls 449 (985)
+..|.++..+++|+.|+++
T Consensus 252 ~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 252 GTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp HHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHhccccceEEECC
Confidence 3334444444444444444
No 318
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=2.9e-27 Score=254.96 Aligned_cols=218 Identities=29% Similarity=0.371 Sum_probs=137.9
Q ss_pred CCcceeeeEEEeCCCCeEEEEEecCCcccccCchhcccccccceecccCCcCCCCCCcccccCCCCcEEEccCcccCCCC
Q 001988 58 ASICSWIGIICDVNSHKVTTLNLSSFNLQGTIPPEIANLSSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQLSGSL 137 (985)
Q Consensus 58 ~~~c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 137 (985)
.++|.|.|+.|+... .++.+++++++++ .+|..+. ++|++|+|++|++++..+..|..+++|++|+|++|+++...
T Consensus 2 ~~~C~~~~~~C~c~~-~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCNN-NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEET-TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeCC-CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 478999999987642 3568999999999 5777665 68999999999999766678899999999999999888544
Q ss_pred ccccccCCccceeeeccccccCCCChhHhhhccccceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccc
Q 001988 138 SSFTFNTSSILDIRLSKNKLSGKLPENICNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNL 217 (985)
Q Consensus 138 ~~~~~~~~~L~~L~ls~n~l~g~lp~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l 217 (985)
+..+.. +++|++|+|++|.+++..+..|.++++|++|+|++|++++..|..|+++
T Consensus 78 ~~~~~~-------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 132 (270)
T 2o6q_A 78 AGIFKE-------------------------LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL 132 (270)
T ss_dssp TTTTSS-------------------------CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred hhhhcC-------------------------CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcC
Confidence 444444 4455555555555544333444555555555555555554444455555
Q ss_pred cccceEeeccccccCCchhhhcCCCCCCEEEecCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEE
Q 001988 218 TVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLN 297 (985)
Q Consensus 218 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~ 297 (985)
++|++|+|++|++++..+..|+.+++|++|+|++|++++..+..|.++++|++|+|++|+++ .+|...+..+++|+.|+
T Consensus 133 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~ 211 (270)
T 2o6q_A 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQ 211 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEE
Confidence 55555555555555444444555555555555555555544445555555555555555555 34444444555666666
Q ss_pred ecCccCCC
Q 001988 298 LGINSFSG 305 (985)
Q Consensus 298 Ls~N~l~~ 305 (985)
|++|.+..
T Consensus 212 l~~N~~~c 219 (270)
T 2o6q_A 212 LQENPWDC 219 (270)
T ss_dssp CCSSCBCC
T ss_pred ecCCCeeC
Confidence 66665543
No 319
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.4e-28 Score=271.75 Aligned_cols=181 Identities=20% Similarity=0.189 Sum_probs=110.1
Q ss_pred ccccceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCceEeeccceeeeecCCCcc-CccceeEEe
Q 001988 441 QKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFW-NLKDILSFD 519 (985)
Q Consensus 441 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~ 519 (985)
++|++|++++|++++..+. .+++|++|++++|++++..+..+..+++|++|++++|++++..+..+. .+++|++|+
T Consensus 99 ~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence 3444444444444432222 134455555555555544444455555555555555555554444442 445555555
Q ss_pred ecCCcccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCccc-
Q 001988 520 ISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKIS- 598 (985)
Q Consensus 520 ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~- 598 (985)
+++|.+++..+ ...+++|+.|+|++|+|++. |..+..+++|++|+|++|+|++ +|..+..+++|+.|+|++|+++
T Consensus 176 L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 176 LQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp CTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBH
T ss_pred CCCCcCccccc--ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccC
Confidence 55555554422 22366777777777777744 4447777888888888888874 6677778888888888888887
Q ss_pred CCCCccccccccccccccc-cccccCCCCCC
Q 001988 599 GSIPVSFEKLSYLKELNLS-FNKLKGEIPRG 628 (985)
Q Consensus 599 ~~~p~~~~~l~~L~~L~ls-~N~l~~~~p~~ 628 (985)
+.+|..+..+++|+.|+++ .+.++|..|..
T Consensus 252 ~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred cCHHHHHhccccceEEECCCchhccCCchhc
Confidence 6677778888888888888 55677777654
No 320
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.7e-26 Score=275.29 Aligned_cols=268 Identities=26% Similarity=0.300 Sum_probs=163.6
Q ss_pred cccceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEEEe
Q 001988 170 RYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQL 249 (985)
Q Consensus 170 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 249 (985)
.++++|++++|.++ .+|..+. ++|++|+|++|+|+ .+|. .+++|++|+|++|+|+ .+|. .+++|++|+|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 35778888888887 7777665 67888888888887 4555 4677888888888877 4554 5677888888
Q ss_pred cCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccEEEccCccccc
Q 001988 250 GFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMGSNSFSG 329 (985)
Q Consensus 250 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 329 (985)
++|++++ +|. .+++|+.|++++|+++ .+|. .+++|++|+|++|++++ +|. .+.+|+.|++++|.+++
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC
Confidence 8888775 333 4567777778777777 4554 24677777777777764 332 23456666666666664
Q ss_pred ccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhcccceecccccccccc
Q 001988 330 FIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNI 409 (985)
Q Consensus 330 ~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~ 409 (985)
+| ..+++|+.|++++|+++.++.. +++|+.|++++|.++. +
T Consensus 176 -l~---~~~~~L~~L~Ls~N~l~~l~~~---------~~~L~~L~L~~N~l~~--------------------------l 216 (622)
T 3g06_A 176 -LP---MLPSGLQELSVSDNQLASLPTL---------PSELYKLWAYNNRLTS--------------------------L 216 (622)
T ss_dssp -CC---CCCTTCCEEECCSSCCSCCCCC---------CTTCCEEECCSSCCSS--------------------------C
T ss_pred -Cc---ccCCCCcEEECCCCCCCCCCCc---------cchhhEEECcCCcccc--------------------------c
Confidence 33 3345566666666665544321 2345555555555442 2
Q ss_pred CCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCcCcC
Q 001988 410 PKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLT 489 (985)
Q Consensus 410 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 489 (985)
|. .+++|++|+|++|+|++ +| ..+++|+.|+|++|+|++ +|. .+++|+.|+|++|+|+ .+|..+.+++
T Consensus 217 ~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~ 284 (622)
T 3g06_A 217 PA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLS 284 (622)
T ss_dssp CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSC
T ss_pred CC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhcc
Confidence 21 12455555555555554 23 234556666666666652 333 3455666666666665 4455566666
Q ss_pred cCceEeeccceeeeecCCCccCc
Q 001988 490 SLQYLNLGSNRFTFVIPSTFWNL 512 (985)
Q Consensus 490 ~L~~L~L~~N~l~~~~p~~~~~l 512 (985)
+|+.|+|++|.+++..|..+..+
T Consensus 285 ~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 285 SETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp TTCEEECCSCCCCHHHHHHHHHH
T ss_pred ccCEEEecCCCCCCcCHHHHHhc
Confidence 66666666666666555554443
No 321
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=1.5e-29 Score=305.76 Aligned_cols=438 Identities=15% Similarity=0.137 Sum_probs=247.2
Q ss_pred CCChhHhhhccccceecccCccccc---cCCcc------------cCCCCCceEEEcccccCCCccccccc-cccccceE
Q 001988 160 KLPENICNHLRYLKHLFLRENMFYG---KIPSS------------LSKCKQLQELHLGYNNLSGAIPKEIG-NLTVLQRI 223 (985)
Q Consensus 160 ~lp~~~~~~l~~L~~L~L~~n~l~~---~~p~~------------l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L 223 (985)
..|..++..+++|++|+++++.... ..|.. ...+++|++|+|++|.+++..+..+. .+++|++|
T Consensus 56 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L 135 (594)
T 2p1m_B 56 VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVL 135 (594)
T ss_dssp SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEE
T ss_pred cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEE
Confidence 3455566677777777777764321 11211 23567888888888888877776665 67888888
Q ss_pred eeccc-cccCC-chhhhcCCCCCCEEEecCCcCcccCccccc----CCCCCCEEEccCCc--CcccCChhhhhcCCCCcE
Q 001988 224 SLINN-KLHGE-IPQEIGYLQNLDVLQLGFNNLTGVVPATIF----NMSTLKEIFLYNNS--LSGSLPSRIDLALPNLEF 295 (985)
Q Consensus 224 ~L~~N-~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~----~l~~L~~L~L~~N~--l~~~~p~~~~~~l~~L~~ 295 (985)
+|++| .++.. ++..+.++++|++|+|++|.+++..+..+. .+++|++|++++|. ++......+...+++|++
T Consensus 136 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~ 215 (594)
T 2p1m_B 136 VLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215 (594)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCE
T ss_pred eCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcE
Confidence 88888 45432 455555788888888888887765544443 56688888888886 221111223334688888
Q ss_pred EEecCcc-CCCcCCccccCCCCccEEEccC-------cccccccCCcccCCCCCceE-eccCCcccCCCCcccccccccc
Q 001988 296 LNLGINS-FSGTIPSSITNASKLILLEMGS-------NSFSGFIPSAIGNLRNLKLF-DIFFNNLTSSTPELGFLSSLAN 366 (985)
Q Consensus 296 L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-------N~l~~~~p~~l~~l~~L~~L-~L~~N~l~~~~~~~~~~~~l~~ 366 (985)
|+|++|. ++ .++..+.++++|+.|+++. |.+.+ ++..+.++++|+.| .+...... .+...+..
T Consensus 216 L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~~------~l~~~~~~ 287 (594)
T 2p1m_B 216 LKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVPA------YLPAVYSV 287 (594)
T ss_dssp EECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCGG------GGGGGHHH
T ss_pred EecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccchh------hHHHHHHh
Confidence 8888873 43 3666777777888887443 33443 33356777777777 33222111 11112335
Q ss_pred cCcccEEEecCCCCCccCCCC-ccchhhcccceeccccccccc-cCCcCCCCCCccEEEccCCCCCCCCCcccccccccc
Q 001988 367 CKKLRYLGLGGNPLDGFLPSS-IGNLSLSLERLNIAFCNISGN-IPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQ 444 (985)
Q Consensus 367 l~~L~~L~L~~N~l~~~~p~~-~~~l~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 444 (985)
+++|++|++++|.+++..... +..++ +|+.|++++| ++.. ++.....+++|++|+++++.-.|
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~-~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g------------- 352 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCP-KLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV------------- 352 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCT-TCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC-------------
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCC-CcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc-------------
Confidence 667777777777655321111 11222 4555555554 2211 11111234455555552210000
Q ss_pred ceecccccccCCchhhhh-hccCCCeEEccCCccccccCCCCc-CcCcCceEeec--c----ceeeee-----cCCCccC
Q 001988 445 GLDLAFNKLAGSIPDEIC-LLSRLNELDLNGNKISGSISSCLG-NLTSLQYLNLG--S----NRFTFV-----IPSTFWN 511 (985)
Q Consensus 445 ~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~--~----N~l~~~-----~p~~~~~ 511 (985)
..+.|.+++.....+. .+++|+.|+++.|.+++.....+. .+++|+.|+++ + |.++.. ++..+.+
T Consensus 353 --~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~ 430 (594)
T 2p1m_B 353 --MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH 430 (594)
T ss_dssp --SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHH
T ss_pred --cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhh
Confidence 0022233322112222 245555555555555443333332 34555555555 2 333311 1122445
Q ss_pred ccceeEEeecCCcccCCccccccC-CCcccEEEccCCccCccCchhh-cccccceeeeeecceeccchhh-hhhcccccC
Q 001988 512 LKDILSFDISSNLLDGPISLAIGN-LKAVVGIDLSRNNLSGNIPTTL-EGLKSLQNISLAYNRLEGPIPE-SFGNMTSLE 588 (985)
Q Consensus 512 l~~L~~L~ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~ 588 (985)
+++|+.|++++ .+++.....+.. +++|+.|+|++|.+++..+..+ .++++|++|+|++|.+++..+. ....+++|+
T Consensus 431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 509 (594)
T 2p1m_B 431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR 509 (594)
T ss_dssp CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence 56677777765 444433334444 7778888888888876655555 6688888999998888654444 345588899
Q ss_pred eEecCCCcccCCCCccc-cccccccccccccccccC
Q 001988 589 SLDLSNNKISGSIPVSF-EKLSYLKELNLSFNKLKG 623 (985)
Q Consensus 589 ~L~Ls~N~l~~~~p~~~-~~l~~L~~L~ls~N~l~~ 623 (985)
.|++++|+++......+ ..+++|+...+..+.-..
T Consensus 510 ~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~ 545 (594)
T 2p1m_B 510 SLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPD 545 (594)
T ss_dssp EEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGG
T ss_pred EEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCccc
Confidence 99999988854322333 456777666666654433
No 322
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=3.4e-27 Score=275.97 Aligned_cols=237 Identities=19% Similarity=0.185 Sum_probs=175.1
Q ss_pred cccccceecccCCcCCCCCCcccccCCCCcEEEccCcccCCCCccccccCCccceeeeccccccCCCChhHhhhccccce
Q 001988 95 NLSSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQLSGSLSSFTFNTSSILDIRLSKNKLSGKLPENICNHLRYLKH 174 (985)
Q Consensus 95 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~g~lp~~~~~~l~~L~~ 174 (985)
..++|++|+|++|.+++..|..|..+++|++|+|++|.+++.+| +..+++|++|+|++|.+++ +| ..++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-----~~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL-----VGPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE-----ECTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC-----CCCCcCE
Confidence 34489999999999998888899999999999999999987665 7777888888888888874 22 2367888
Q ss_pred ecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhc-CCCCCCEEEecCCc
Q 001988 175 LFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIG-YLQNLDVLQLGFNN 253 (985)
Q Consensus 175 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~ 253 (985)
|++++|.+++..+. .+++|++|+|++|.+++..|..++++++|++|+|++|++++.+|..+. .+++|++|+|++|.
T Consensus 104 L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 88888888765554 346788888888888877777788888888888888888877777775 67888888888888
Q ss_pred CcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccEEEccCcccc-cccC
Q 001988 254 LTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMGSNSFS-GFIP 332 (985)
Q Consensus 254 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p 332 (985)
+++..+ +..+++|++|+|++|.+++ +|.. +..+++|+.|+|++|++++ +|..+..+++|+.|++++|.+. +.+|
T Consensus 181 l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 181 IYDVKG--QVVFAKLKTLDLSSNKLAF-MGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp CCEEEC--CCCCTTCCEEECCSSCCCE-ECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred cccccc--cccCCCCCEEECCCCCCCC-CCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 876532 3357777777777777774 3333 3466777777777777774 5666667777777777777776 5555
Q ss_pred CcccCCCCCceEecc
Q 001988 333 SAIGNLRNLKLFDIF 347 (985)
Q Consensus 333 ~~l~~l~~L~~L~L~ 347 (985)
..+..++.|+.++++
T Consensus 256 ~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 256 DFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHHhCCCCcEEecc
Confidence 556666666555553
No 323
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=2.1e-26 Score=249.20 Aligned_cols=210 Identities=24% Similarity=0.260 Sum_probs=152.9
Q ss_pred CccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCceEeec
Q 001988 418 NLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLG 497 (985)
Q Consensus 418 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 497 (985)
+|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|++|+|++|++++..+..|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45666666666665555556666666666666666665555556666666666666666666666666666777777777
Q ss_pred cceeeeecCCCccCccceeEEeecCCcccCC-ccccccCCCcccEEEccCCccCccCchhhcccccce----eeeeecce
Q 001988 498 SNRFTFVIPSTFWNLKDILSFDISSNLLDGP-ISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQ----NISLAYNR 572 (985)
Q Consensus 498 ~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~Ls~N~ 572 (985)
+|++++..+..|..+++|++|++++|++++. .|..+..+++|+.|+|++|++++..+..|..+++|+ .|++++|+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 7777666665667777777777777777664 467788888888888888888877777888877777 88999999
Q ss_pred eccchhhhhhcccccCeEecCCCcccCCCCccccccccccccccccccccCCCCCC
Q 001988 573 LEGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKLSYLKELNLSFNKLKGEIPRG 628 (985)
Q Consensus 573 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~ 628 (985)
+++..+..+.. .+|+.|+|++|++++..+..|..+++|+.|++++|++++.+|..
T Consensus 189 l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 189 MNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred ccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 98765555544 48999999999999777777888999999999999999888753
No 324
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.93 E-value=6.6e-27 Score=277.17 Aligned_cols=181 Identities=18% Similarity=0.155 Sum_probs=128.7
Q ss_pred eeccCceeEEEEE-EcCCcEEEEEEeccCCc----------chHHHHHHHHHHHHhc-CCCCeeeEEeeeecCCceEEEE
Q 001988 734 IGIGGFGSVYRAR-LEDGVEIAIKVFHPQCA----------STLKSFEAECEVIKNI-RHRNLVKIISSCSNDDFKALVL 801 (985)
Q Consensus 734 ig~G~~g~V~~~~-~~~~~~vAvK~~~~~~~----------~~~~~~~~E~~il~~l-~h~niv~l~~~~~~~~~~~lv~ 801 (985)
.+.|+.|.+..++ .-.|+.||||++.+... ...++|.+|+++|+++ .|+||+++++++++++..||||
T Consensus 242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM 321 (569)
T 4azs_A 242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM 321 (569)
T ss_dssp -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence 4567777666654 33688899999976521 2245799999999999 6999999999999999999999
Q ss_pred eccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCC
Q 001988 802 EYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDE 881 (985)
Q Consensus 802 e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 881 (985)
||++|++|.+++...+ .++.. +|+.||+.||+|+ |++|||||||||+|||++++|.+||+|||+|+......
T Consensus 322 Eyv~G~~L~d~i~~~~-~l~~~---~I~~QIl~AL~yl---H~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~- 393 (569)
T 4azs_A 322 EKLPGRLLSDMLAAGE-EIDRE---KILGSLLRSLAAL---EKQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDC- 393 (569)
T ss_dssp ECCCSEEHHHHHHTTC-CCCHH---HHHHHHHHHHHHH---HHTTCEESCCCGGGEEECTTSCEEECCCTTEESCC----
T ss_pred ecCCCCcHHHHHHhCC-CCCHH---HHHHHHHHHHHHH---HHCCceeccCchHhEEECCCCCEEEeecccCeeCCCCC-
Confidence 9999999999998764 55553 5899999999999 89999999999999999999999999999998764322
Q ss_pred cceecccccccccccccccccCccchhhhcccccccchhhhccc
Q 001988 882 STMRTQTLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDK 925 (985)
Q Consensus 882 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~ 925 (985)
......+||+.|||||++.+ .+....|+ |+.|+..+++..+
T Consensus 394 -~~~~t~vGTp~YmAPE~l~g-~~~~~~d~-~s~g~~~~~l~~~ 434 (569)
T 4azs_A 394 -SWPTNLVQSFFVFVNELFAE-NKSWNGFW-RSAPVHPFNLPQP 434 (569)
T ss_dssp -CCSHHHHHHHHHHHHHHC-------------------CCCCTT
T ss_pred -ccccCceechhhccHHHhCC-CCCCcccc-cccccchhhhccc
Confidence 23445689999999998764 46667777 8888777666543
No 325
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.4e-28 Score=297.05 Aligned_cols=395 Identities=13% Similarity=0.110 Sum_probs=197.1
Q ss_pred cccccceecccCCcCCCCCCcccc-cCCCCcEEEccCc-ccCCC-CccccccCCccceeeeccccccCCCChhH---hhh
Q 001988 95 NLSSLKSLDLSHNKLSSNIPSSIF-TMSTLKVLYLMDN-QLSGS-LSSFTFNTSSILDIRLSKNKLSGKLPENI---CNH 168 (985)
Q Consensus 95 ~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~n-~l~~~-~~~~~~~~~~L~~L~ls~n~l~g~lp~~~---~~~ 168 (985)
.+++|++|+|++|.+++..+..+. .+++|++|+|++| .++.. ++.....+++|++|++++|.+++..+..+ ...
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 455666666666665554444444 4566666666665 33321 33333355566666666666554433222 123
Q ss_pred ccccceecccCcc--cccc-CCcccCCCCCceEEEcccc-cCCCccccccccccccceEee-------ccccccCCchhh
Q 001988 169 LRYLKHLFLRENM--FYGK-IPSSLSKCKQLQELHLGYN-NLSGAIPKEIGNLTVLQRISL-------INNKLHGEIPQE 237 (985)
Q Consensus 169 l~~L~~L~L~~n~--l~~~-~p~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L-------~~N~l~~~~p~~ 237 (985)
+++|++|++++|. +... ++..+.++++|++|+|++| .+++ +|..+.++++|++|++ ..|.+.+ ++..
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~ 260 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVA 260 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHH-HHHH
Confidence 4466666666554 1110 1111233456666666655 3332 5555556666666653 2333332 3345
Q ss_pred hcCCCCCCEE-EecCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCc-CCccccCCC
Q 001988 238 IGYLQNLDVL-QLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGT-IPSSITNAS 315 (985)
Q Consensus 238 ~~~l~~L~~L-~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~ 315 (985)
+.++++|+.| .+..... +.+|..+..+++|++|+|++|.+++.....+...+++|+.|++++| +++. ++.....++
T Consensus 261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred HhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 5566666665 2332221 2344444455566666666666543333333345566666666655 3221 111122355
Q ss_pred CccEEEcc---------CcccccccCCccc-CCCCCceEeccCCcccCCCCcccccccc-cccCcccEEEec--C----C
Q 001988 316 KLILLEMG---------SNSFSGFIPSAIG-NLRNLKLFDIFFNNLTSSTPELGFLSSL-ANCKKLRYLGLG--G----N 378 (985)
Q Consensus 316 ~L~~L~L~---------~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l-~~l~~L~~L~L~--~----N 378 (985)
+|+.|+++ .+.+++.....+. .+++|+.|+++.|+++.... ..+ ..+++|+.|+++ + |
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~-----~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAAL-----ITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHH-----HHHHHHCTTCCEEEEEESSTTCCC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHH-----HHHHhhCCCcceeEeecccCCCcc
Confidence 56666552 2334332222222 35666666665555543211 112 235666666666 2 3
Q ss_pred CCCccC-----CCCccchhhcccceeccccccccccCCcCCC-CCCccEEEccCCCCCCCCCccc-cccccccceecccc
Q 001988 379 PLDGFL-----PSSIGNLSLSLERLNIAFCNISGNIPKAIGN-LSNLIVLSLGGNNLSGSIPVTF-GGLQKLQGLDLAFN 451 (985)
Q Consensus 379 ~l~~~~-----p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N 451 (985)
.++... +..+..++ +|+.|++++ .+++..+..+.. +++|++|+|++|.+++..+..+ .++++|+.|+|++|
T Consensus 414 ~l~~~~~~~~~~~l~~~~~-~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 414 YLTLEPLDIGFGAIVEHCK-DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC 491 (594)
T ss_dssp TTTCCCTHHHHHHHHHHCT-TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESC
T ss_pred cccCCchhhHHHHHHhhCC-CccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCC
Confidence 333110 01122233 566666655 555444444443 6677777777777765444444 55677777777777
Q ss_pred cccCCchh-hhhhccCCCeEEccCCccccccCCCC-cCcCcCceEeeccce
Q 001988 452 KLAGSIPD-EICLLSRLNELDLNGNKISGSISSCL-GNLTSLQYLNLGSNR 500 (985)
Q Consensus 452 ~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~ 500 (985)
.+++.... .+..+++|+.|++++|+++......+ ..+++|+...+..+.
T Consensus 492 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 492 PFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp SCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 77533332 23446777777777777753322333 345666665555543
No 326
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.1e-25 Score=241.33 Aligned_cols=225 Identities=22% Similarity=0.243 Sum_probs=185.8
Q ss_pred EEecCCCCCccCCCCccchhhcccceeccccccccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceeccccc
Q 001988 373 LGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNK 452 (985)
Q Consensus 373 L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 452 (985)
.+..+..+. .+|..+. .+|++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|+|++|+
T Consensus 12 ~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 334444443 3444332 368888888888887777788888889999999998887777788888899999999999
Q ss_pred ccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCceEeeccceeeee-cCCCccCccceeEEeecCCcccCCccc
Q 001988 453 LAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFV-IPSTFWNLKDILSFDISSNLLDGPISL 531 (985)
Q Consensus 453 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~~~~ 531 (985)
+++..+..+..+++|++|++++|++++..+..+.++++|++|++++|++++. +|..|.++++|++|++++|++++..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 8877778888889999999999998877777888899999999999998875 588888999999999999999888877
Q ss_pred cccCCCccc----EEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCC
Q 001988 532 AIGNLKAVV----GIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIP 602 (985)
Q Consensus 532 ~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 602 (985)
.+..+++|+ .|++++|++++..+..+.. .+|++|+|++|++++..+..|.++++|+.|+|++|++++..|
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred HhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 888777777 8999999999776666654 589999999999998877788999999999999999996543
No 327
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=6.3e-25 Score=236.64 Aligned_cols=185 Identities=24% Similarity=0.288 Sum_probs=109.1
Q ss_pred cccceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCceEeeccceeeeecCCCccCccceeEEeec
Q 001988 442 KLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDIS 521 (985)
Q Consensus 442 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls 521 (985)
+|+.|+|++|++++..+..|..+++|++|+|++|++++..+..|.++++|++|++++|+++++.+..|.++++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 34444444444443333344444444444444444444333444455555555555555554444455555555555555
Q ss_pred CCcccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCC
Q 001988 522 SNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSI 601 (985)
Q Consensus 522 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 601 (985)
+|++++..+..|..+++|+.|+|++|+|++..+..|..+++|++|+|++|++++..+..|.++++|++|+|++|+|++..
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence 55555555555666666666666666666555555666777777777777777666666777777777777777777655
Q ss_pred CccccccccccccccccccccCCCC
Q 001988 602 PVSFEKLSYLKELNLSFNKLKGEIP 626 (985)
Q Consensus 602 p~~~~~l~~L~~L~ls~N~l~~~~p 626 (985)
+..|..+++|+.|++++|++.+..+
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 198 EGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred HHHhccccCCCEEEecCCCeeCCCc
Confidence 5567777777777777777766554
No 328
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=3.2e-25 Score=239.09 Aligned_cols=222 Identities=20% Similarity=0.237 Sum_probs=190.6
Q ss_pred cccceeccccccccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEcc
Q 001988 394 SLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLN 473 (985)
Q Consensus 394 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 473 (985)
.+..+++..+.+.... .+..+++|+.|++++|.++.. ..+..+++|++|++++|.+++. +.+..+++|++|+|+
T Consensus 20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHHhcCccccccc--ccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 3555666666655432 355678888999999888743 3578888999999999998863 368888999999999
Q ss_pred CCccccccCCCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccC
Q 001988 474 GNKISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNI 553 (985)
Q Consensus 474 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 553 (985)
+|++++..+..|.++++|++|++++|+++++.+..|.++++|++|++++|++++..+..+..+++|+.|++++|+|++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 99999888888899999999999999999888888899999999999999999888888899999999999999999888
Q ss_pred chhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCccccccccccccccccccccCCCCCC
Q 001988 554 PTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKLSYLKELNLSFNKLKGEIPRG 628 (985)
Q Consensus 554 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~ 628 (985)
+..|+.+++|++|+|++|++++..|..|..+++|+.|+|++|.+.+. +++|+.|+++.|+++|.+|..
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 88889999999999999999998888899999999999999999865 447899999999999999974
No 329
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2.7e-24 Score=233.76 Aligned_cols=206 Identities=22% Similarity=0.234 Sum_probs=143.2
Q ss_pred CCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCc
Q 001988 413 IGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQ 492 (985)
Q Consensus 413 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 492 (985)
+.++++++++++++|+++. +|..+. ++++.|+|++|.+++..|..+..+++|++|+|++|+|++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 3455666677777776663 333332 4666777777777666666677777777777777777654332 5667777
Q ss_pred eEeeccceeeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecce
Q 001988 493 YLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNR 572 (985)
Q Consensus 493 ~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 572 (985)
+|++++|+++ .+|..+.++++|++|++++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 7777777776 355666777777777777777777766777777777777777777776666667777777777777777
Q ss_pred eccchhhhhhcccccCeEecCCCcccCCCCccccccccccccccccccccCCC
Q 001988 573 LEGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKLSYLKELNLSFNKLKGEI 625 (985)
Q Consensus 573 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~ 625 (985)
|++..+..|.++++|+.|+|++|+|+ .+|..+..+.+|+.|+|++|++.+..
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 77666666777777888888888777 56666777777777777777776543
No 330
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2.2e-24 Score=232.64 Aligned_cols=209 Identities=22% Similarity=0.278 Sum_probs=125.2
Q ss_pred cCCCCcEEEccCcccCCCCccccccCCccceeeeccccccCCCChhHhhhccccceecccCccccccCCcccCCCCCceE
Q 001988 119 TMSTLKVLYLMDNQLSGSLSSFTFNTSSILDIRLSKNKLSGKLPENICNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQE 198 (985)
Q Consensus 119 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~g~lp~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 198 (985)
.+++|++|++++|.++.. ..+..+++|++|++++|.+++ ++ . +..+++|++|+|++|.+++..|..|+++++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~-~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-IS-A-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-CG-G-GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-ch-h-hcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 344444444444444321 123334444444444444443 22 2 245666666666666666555555666666666
Q ss_pred EEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEEEecCCcCcccCcccccCCCCCCEEEccCCcC
Q 001988 199 LHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSL 278 (985)
Q Consensus 199 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l 278 (985)
|+|++|++++..|..|+++++|++|++++|++++..+..|+.+++|++|++++|++++..+..+.++++|++|++++|++
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 66666666655555566666666677766666655555566666677777777766666666666666777777777766
Q ss_pred cccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccEEEccCcccccccCCcccCCCC
Q 001988 279 SGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMGSNSFSGFIPSAIGNLRN 340 (985)
Q Consensus 279 ~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 340 (985)
++ +|...+..+++|++|+|++|.+.+. +++|+.|+++.|.++|.+|..++.+..
T Consensus 194 ~~-~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 194 KS-VPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp SC-CCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred Cc-cCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 63 3334444566777777777766543 345666777777777777777666654
No 331
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=3.2e-24 Score=228.37 Aligned_cols=192 Identities=24% Similarity=0.279 Sum_probs=144.1
Q ss_pred CcceeeeEEEeCCCCeEEEEEecCCcccccCchhcccccccceecccCCcCCCCCCcccccCCCCcEEEccCcccCCCCc
Q 001988 59 SICSWIGIICDVNSHKVTTLNLSSFNLQGTIPPEIANLSSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQLSGSLS 138 (985)
Q Consensus 59 ~~c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~ 138 (985)
+||.|.|++|.... ..+|+++++++ .+|..+. +.|+.|+|++|.+++..|..+.++++|++|+|++|++++..+
T Consensus 3 ~Cp~~~gC~C~~~~---~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNEGK---KEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEGGG---TEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCCCC---eEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 68999999996432 46899999998 6777665 689999999999998888889999999999999998886554
Q ss_pred cccccCCccceeeeccccccCCCChhHhhhccccceecccCccccccCCcccCCCCCceEEEcccccCCCcccccccccc
Q 001988 139 SFTFNTSSILDIRLSKNKLSGKLPENICNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLT 218 (985)
Q Consensus 139 ~~~~~~~~L~~L~ls~n~l~g~lp~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 218 (985)
..+ ..+++|++|+|++|.+++..|..|..+++|++|+|++|+|++..+..|++++
T Consensus 77 ~~~-------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 131 (251)
T 3m19_A 77 GVF-------------------------DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT 131 (251)
T ss_dssp TTT-------------------------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hHh-------------------------ccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCC
Confidence 444 4556666666666666655556667777777777777777765555667777
Q ss_pred ccceEeeccccccCCchhhhcCCCCCCEEEecCCcCcccCcccccCCCCCCEEEccCCcCccc
Q 001988 219 VLQRISLINNKLHGEIPQEIGYLQNLDVLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGS 281 (985)
Q Consensus 219 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 281 (985)
+|++|+|++|++++..+..|+.+++|++|+|++|++++..+..+..+++|++|+|++|.+.+.
T Consensus 132 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 132 KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 777777777777766666677777777777777777776666777777777888887777654
No 332
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.91 E-value=7.5e-25 Score=258.16 Aligned_cols=169 Identities=17% Similarity=0.191 Sum_probs=129.0
Q ss_pred ccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcc--------hHHHHHHHHHHHHhcCCCCeeeEEeeeecCCceEE
Q 001988 728 FAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCAS--------TLKSFEAECEVIKNIRHRNLVKIISSCSNDDFKAL 799 (985)
Q Consensus 728 ~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~--------~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~l 799 (985)
+...+.||+|+||.||+|.. .++.+|+|+....... ..+.+.+|++++++++||||+++..++...+..++
T Consensus 338 ~~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~l 416 (540)
T 3en9_A 338 KIPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRI 416 (540)
T ss_dssp ----------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEE
T ss_pred CCCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEE
Confidence 34567899999999999955 5788999987544221 13457999999999999999966666667778899
Q ss_pred EEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCC
Q 001988 800 VLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGE 879 (985)
Q Consensus 800 v~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~ 879 (985)
||||+++++|.+++.. +..++.|+++||+|| |+++|+||||||+|||++. .+||+|||+++.....
T Consensus 417 VmE~~~ggsL~~~l~~---------~~~i~~qi~~aL~~L---H~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~ 482 (540)
T 3en9_A 417 MMSYINGKLAKDVIED---------NLDIAYKIGEIVGKL---HKNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLD 482 (540)
T ss_dssp EEECCCSEEHHHHSTT---------CTHHHHHHHHHHHHH---HHTTEECTTCCTTSEEESS--SEEECCCTTCEECCCH
T ss_pred EEECCCCCCHHHHHHH---------HHHHHHHHHHHHHHH---HHCcCccCCCCHHHEEECC--eEEEEECccCEECCCc
Confidence 9999999999999886 457999999999999 7899999999999999999 9999999999987432
Q ss_pred CCcc-----eeccccccccccccccccc--Cccchhhhc
Q 001988 880 DEST-----MRTQTLATIGYMAPDEIFV--GELSLKRWV 911 (985)
Q Consensus 880 ~~~~-----~~~~~~gt~~y~aPE~~~~--~~~~~~~dv 911 (985)
.... .....+||+.|||||++.. ..|+...|.
T Consensus 483 ~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ 521 (540)
T 3en9_A 483 EDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDR 521 (540)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTT
T ss_pred cccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhH
Confidence 2111 1235679999999999876 455555555
No 333
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=4.9e-25 Score=248.27 Aligned_cols=258 Identities=21% Similarity=0.171 Sum_probs=137.9
Q ss_pred EEEecCCcccccCchhcccccccceecccCCcCCCCCC----cccccCC-CCcEEEccCcccCCCCccccccC-----Cc
Q 001988 77 TLNLSSFNLQGTIPPEIANLSSLKSLDLSHNKLSSNIP----SSIFTMS-TLKVLYLMDNQLSGSLSSFTFNT-----SS 146 (985)
Q Consensus 77 ~l~L~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~p----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~-----~~ 146 (985)
..+|+.++++|.+|..+...++|++|||++|.+++..+ ..+..++ +|++|+|++|++++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45778888888877777777778888888888876555 5666777 78888888888776555554443 55
Q ss_pred cceeeeccccccCCCChhHhhhc----cccceecccCccccccCCcccC----C-CCCceEEEcccccCCCccccccccc
Q 001988 147 ILDIRLSKNKLSGKLPENICNHL----RYLKHLFLRENMFYGKIPSSLS----K-CKQLQELHLGYNNLSGAIPKEIGNL 217 (985)
Q Consensus 147 L~~L~ls~n~l~g~lp~~~~~~l----~~L~~L~L~~n~l~~~~p~~l~----~-l~~L~~L~L~~N~l~~~~p~~~~~l 217 (985)
|++|+|++|.+++..+..+...+ ++|++|+|++|.+++..+..++ . .++|++|+|++|++++..+..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~---- 157 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE---- 157 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH----
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH----
Confidence 66666666666554444432211 4555555555555543333322 2 135555555555554322221
Q ss_pred cccceEeeccccccCCchhhhcCCC-CCCEEEecCCcCcccCccccc----CC-CCCCEEEccCCcCccc----CChhhh
Q 001988 218 TVLQRISLINNKLHGEIPQEIGYLQ-NLDVLQLGFNNLTGVVPATIF----NM-STLKEIFLYNNSLSGS----LPSRID 287 (985)
Q Consensus 218 ~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~----~l-~~L~~L~L~~N~l~~~----~p~~~~ 287 (985)
++..+..++ +|++|+|++|++++..+..+. .+ ++|++|+|++|.+++. ++..+.
T Consensus 158 ----------------l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 158 ----------------LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp ----------------HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred ----------------HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 122223333 444444444444443332222 22 3455555555544431 222222
Q ss_pred hcCCCCcEEEecCccCCCcCC----ccccCCCCccEEEccCcccccc-------cCCcccCCCCCceEeccCCcccCC
Q 001988 288 LALPNLEFLNLGINSFSGTIP----SSITNASKLILLEMGSNSFSGF-------IPSAIGNLRNLKLFDIFFNNLTSS 354 (985)
Q Consensus 288 ~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~-------~p~~l~~l~~L~~L~L~~N~l~~~ 354 (985)
...++|++|+|++|++++..+ ..+..+++|+.|++++|.+.+. ++..+..+++|++||+++|++...
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 112355555555555554332 2234445566666666653322 234566677777777777776544
No 334
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=1e-25 Score=251.44 Aligned_cols=212 Identities=18% Similarity=0.264 Sum_probs=132.7
Q ss_pred CCcceeeeEEEeCCCCeEEEEEecCCcccccCchhcccc--cccceecccCCcCCCCCCcccccCCCCcEEEccCcccCC
Q 001988 58 ASICSWIGIICDVNSHKVTTLNLSSFNLQGTIPPEIANL--SSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQLSG 135 (985)
Q Consensus 58 ~~~c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 135 (985)
.-|..|.++.|+. ..++.+|++++++. +..+..+ +.++.|++++|.+++..|. ++.+++|++|+|++|.+++
T Consensus 34 ~vc~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~ 107 (336)
T 2ast_B 34 GVCKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV 107 (336)
T ss_dssp SSCHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECH
T ss_pred HHHHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCH
Confidence 4566899998864 34678999998877 5667777 8999999999999876655 6678999999999888775
Q ss_pred C-CccccccCCccceeeeccccccCCCChhHhhhccccceecccCc-ccccc-CCcccCCCCCceEEEcccc-cCCCc-c
Q 001988 136 S-LSSFTFNTSSILDIRLSKNKLSGKLPENICNHLRYLKHLFLREN-MFYGK-IPSSLSKCKQLQELHLGYN-NLSGA-I 210 (985)
Q Consensus 136 ~-~~~~~~~~~~L~~L~ls~n~l~g~lp~~~~~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~L~~N-~l~~~-~ 210 (985)
. ++..+..+++|++|++++|.+++..|..+ +.+++|++|+|++| .+++. +|..+.++++|++|+|++| .+++. +
T Consensus 108 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 186 (336)
T 2ast_B 108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV 186 (336)
T ss_dssp HHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH
T ss_pred HHHHHHHhhCCCCCEEeCcCcccCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHH
Confidence 4 55555555666666666665555444444 34555555555555 44432 4444555555555555555 55533 3
Q ss_pred cccccccc-ccceEeeccc--ccc-CCchhhhcCCCCCCEEEecCCc-CcccCcccccCCCCCCEEEccCC
Q 001988 211 PKEIGNLT-VLQRISLINN--KLH-GEIPQEIGYLQNLDVLQLGFNN-LTGVVPATIFNMSTLKEIFLYNN 276 (985)
Q Consensus 211 p~~~~~l~-~L~~L~L~~N--~l~-~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N 276 (985)
+..+..++ +|++|++++| .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++|++++|
T Consensus 187 ~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 187 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 44455555 5555555555 233 3445555555555555555555 44444555555555555555555
No 335
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=9e-24 Score=229.60 Aligned_cols=208 Identities=24% Similarity=0.197 Sum_probs=184.8
Q ss_pred cccccccccceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCceEeeccceeeeecCCCccCccce
Q 001988 436 TFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDI 515 (985)
Q Consensus 436 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 515 (985)
.+.++++++.+++++|.++ .+|..+ .++++.|+|++|+|++..+..|.++++|++|+|++|+|+++.+. ..+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 4678899999999999999 566544 37899999999999998899999999999999999999987554 789999
Q ss_pred eEEeecCCcccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCC
Q 001988 516 LSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNN 595 (985)
Q Consensus 516 ~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 595 (985)
++|++++|+++. +|..+..+++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|+.|+|++|
T Consensus 80 ~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 999999999985 4668899999999999999999888899999999999999999999888888999999999999999
Q ss_pred cccCCCCccccccccccccccccccccCCCCCCCCCcccccccccCCccccCCC
Q 001988 596 KISGSIPVSFEKLSYLKELNLSFNKLKGEIPRGGPFANFTAESFMGNELLCGLP 649 (985)
Q Consensus 596 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 649 (985)
+|++..+..|..+++|+.|+|++|+++..++......++....+.+||+.|.+.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCc
Confidence 999777777899999999999999999554444455567778889999988765
No 336
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=6e-25 Score=247.54 Aligned_cols=266 Identities=15% Similarity=0.111 Sum_probs=191.4
Q ss_pred ecccCCcCCCCCCcccccCCCCcEEEccCcccCCCCccccccCCccceeeeccccccCCCChhHhhhcc-ccceecccCc
Q 001988 102 LDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQLSGSLSSFTFNTSSILDIRLSKNKLSGKLPENICNHLR-YLKHLFLREN 180 (985)
Q Consensus 102 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~g~lp~~~~~~l~-~L~~L~L~~n 180 (985)
++|++|.++|.+|..+...++|++|||++|.+++..+..+ ...+..++ +|++|+|++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l---------------------~~~l~~~~~~L~~L~Ls~N 61 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVEL---------------------IQAFANTPASVTSLNLSGN 61 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHH---------------------HHHHHTCCTTCCEEECCSS
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHH---------------------HHHHHhCCCceeEEECcCC
Confidence 4566667766666665555556666666666653222000 02234455 6777777777
Q ss_pred cccccCCcccCCC-----CCceEEEcccccCCCccccccccc-----cccceEeeccccccCCchhhhc----C-CCCCC
Q 001988 181 MFYGKIPSSLSKC-----KQLQELHLGYNNLSGAIPKEIGNL-----TVLQRISLINNKLHGEIPQEIG----Y-LQNLD 245 (985)
Q Consensus 181 ~l~~~~p~~l~~l-----~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~----~-l~~L~ 245 (985)
.+++..+..+..+ ++|++|+|++|++++..+..++.. ++|++|+|++|++++..+..++ . .++|+
T Consensus 62 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 141 (362)
T 3goz_A 62 SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee
Confidence 7776666666654 888888888888887777655543 7899999999998877666544 3 36999
Q ss_pred EEEecCCcCcccC----cccccCCC-CCCEEEccCCcCcccCChhhh---hcC-CCCcEEEecCccCCCc----CCcccc
Q 001988 246 VLQLGFNNLTGVV----PATIFNMS-TLKEIFLYNNSLSGSLPSRID---LAL-PNLEFLNLGINSFSGT----IPSSIT 312 (985)
Q Consensus 246 ~L~Ls~N~l~~~~----p~~l~~l~-~L~~L~L~~N~l~~~~p~~~~---~~l-~~L~~L~Ls~N~l~~~----~p~~~~ 312 (985)
+|+|++|++++.. +..+..++ +|++|+|++|++++..+..+. ... ++|++|+|++|++++. ++..+.
T Consensus 142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 9999999998643 44455665 999999999999866664432 234 5999999999999974 455555
Q ss_pred C-CCCccEEEccCcccccccC----CcccCCCCCceEeccCCcccCCCCcc--cccccccccCcccEEEecCCCCCccCC
Q 001988 313 N-ASKLILLEMGSNSFSGFIP----SAIGNLRNLKLFDIFFNNLTSSTPEL--GFLSSLANCKKLRYLGLGGNPLDGFLP 385 (985)
Q Consensus 313 ~-l~~L~~L~L~~N~l~~~~p----~~l~~l~~L~~L~L~~N~l~~~~~~~--~~~~~l~~l~~L~~L~L~~N~l~~~~p 385 (985)
. .++|+.|+|++|.+++..+ ..+..+++|+.|++++|.+....... .+...+.++++|+.|++++|++....+
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 5 4599999999999987655 44577899999999999977665431 133457788999999999999987654
Q ss_pred CCc
Q 001988 386 SSI 388 (985)
Q Consensus 386 ~~~ 388 (985)
..+
T Consensus 302 ~~~ 304 (362)
T 3goz_A 302 IPI 304 (362)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 337
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=9.8e-24 Score=222.91 Aligned_cols=196 Identities=18% Similarity=0.240 Sum_probs=105.1
Q ss_pred CccEEEccCCCCCCCCCccccccccccceeccccc-ccCCchhhhhhccCCCeEEccC-CccccccCCCCcCcCcCceEe
Q 001988 418 NLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNK-LAGSIPDEICLLSRLNELDLNG-NKISGSISSCLGNLTSLQYLN 495 (985)
Q Consensus 418 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~ 495 (985)
+|++|++++|+++++.+.+|.++++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44444444444444444444444444444444443 4433333444444555555554 455444444455555555555
Q ss_pred eccceeeeecCCCccCcccee---EEeecCC-cccCCccccccCCCccc-EEEccCCccCccCchhhcccccceeeeeec
Q 001988 496 LGSNRFTFVIPSTFWNLKDIL---SFDISSN-LLDGPISLAIGNLKAVV-GIDLSRNNLSGNIPTTLEGLKSLQNISLAY 570 (985)
Q Consensus 496 L~~N~l~~~~p~~~~~l~~L~---~L~ls~N-~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 570 (985)
+++|++++ +|. |..+++|+ +|++++| +++++.+..|.++++|+ .|++++|+++...+..|.. ++|+.|+|++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 55555554 233 44444444 5555555 55555555555666666 6666666666333333443 6677777777
Q ss_pred ce-eccchhhhhhcc-cccCeEecCCCcccCCCCccccccccccccccccc
Q 001988 571 NR-LEGPIPESFGNM-TSLESLDLSNNKISGSIPVSFEKLSYLKELNLSFN 619 (985)
Q Consensus 571 N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N 619 (985)
|+ +++..+..|.++ ++|+.|+|++|+|++. |.. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence 74 665556666666 7777777777777643 332 4556666666654
No 338
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=5.1e-24 Score=234.46 Aligned_cols=203 Identities=20% Similarity=0.230 Sum_probs=156.8
Q ss_pred CCCccEEEccCCCCCCCCCccc--cccccccceecccccccCCch----hhhhhccCCCeEEccCCccccccCCCCcCcC
Q 001988 416 LSNLIVLSLGGNNLSGSIPVTF--GGLQKLQGLDLAFNKLAGSIP----DEICLLSRLNELDLNGNKISGSISSCLGNLT 489 (985)
Q Consensus 416 l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 489 (985)
+++|++|++++|.+++..|..+ ..+++|++|+|++|.+++..+ ..+..+++|++|+|++|++++..+..|.+++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3557778888888777777776 777788888888888776544 3345677888888888888877777888888
Q ss_pred cCceEeeccceeeee---c-CCCccCccceeEEeecCCcccCCccc---cccCCCcccEEEccCCccCccCchhhccc--
Q 001988 490 SLQYLNLGSNRFTFV---I-PSTFWNLKDILSFDISSNLLDGPISL---AIGNLKAVVGIDLSRNNLSGNIPTTLEGL-- 560 (985)
Q Consensus 490 ~L~~L~L~~N~l~~~---~-p~~~~~l~~L~~L~ls~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-- 560 (985)
+|++|+|++|++.+. . +..+..+++|++|++++|+++...+. .++.+++|+.|+|++|+|++..|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 888888888887642 2 23346778888888888888643322 35678899999999999998878777776
Q ss_pred -ccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCccccccccccccccccccccC
Q 001988 561 -KSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKLSYLKELNLSFNKLKG 623 (985)
Q Consensus 561 -~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 623 (985)
++|++|+|++|+|+ .+|..+. ++|++|||++|+|++. |. +..+++|+.|++++|+++.
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 69999999999999 5677664 7999999999999964 43 6788999999999999874
No 339
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1.1e-23 Score=234.76 Aligned_cols=255 Identities=16% Similarity=0.159 Sum_probs=182.2
Q ss_pred ceeeeccccccCCCChhHhhhc--cccceecccCccccccCCcccCCCCCceEEEcccccCCCc-cccccccccccceEe
Q 001988 148 LDIRLSKNKLSGKLPENICNHL--RYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGA-IPKEIGNLTVLQRIS 224 (985)
Q Consensus 148 ~~L~ls~n~l~g~lp~~~~~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~ 224 (985)
+.+|++.|.+. +..+..+ ++++.|++++|.+.+..|. +.++++|++|+|++|.+++. +|..+.++++|++|+
T Consensus 50 ~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 50 QTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred eeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 34444444443 2333555 7788888888888866555 56788888888888888765 777788888888888
Q ss_pred eccccccCCchhhhcCCCCCCEEEecCC-cCcc-cCcccccCCCCCCEEEccCC-cCcccCChhhhhcCC-CCcEEEecC
Q 001988 225 LINNKLHGEIPQEIGYLQNLDVLQLGFN-NLTG-VVPATIFNMSTLKEIFLYNN-SLSGSLPSRIDLALP-NLEFLNLGI 300 (985)
Q Consensus 225 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~-~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~~l~-~L~~L~Ls~ 300 (985)
+++|++++..|..++.+++|++|++++| .+++ .++..+.++++|++|++++| .+++.........++ +|++|+|++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 8888888778888888888888888888 6775 36667778888888888888 777542223345678 888888888
Q ss_pred c--cCC-CcCCccccCCCCccEEEccCcc-cccccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEec
Q 001988 301 N--SFS-GTIPSSITNASKLILLEMGSNS-FSGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLG 376 (985)
Q Consensus 301 N--~l~-~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~ 376 (985)
| .++ +.+|..+.++++|+.|++++|. +++..+..++++++|++|++++|. ...+. .+..+.++++|++|+++
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~--~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPE--TLLELGEIPTLKTLQVF 280 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGG--GGGGGGGCTTCCEEECT
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHH--HHHHHhcCCCCCEEecc
Confidence 8 455 4566677778888888888888 777777788888888888888885 21111 12346778889999988
Q ss_pred CCCCCccCCCCccchhhcccceeccccccccccCCcCCC
Q 001988 377 GNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGN 415 (985)
Q Consensus 377 ~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~ 415 (985)
+| +. ...+..+...++.|++++|++++..|..++.
T Consensus 281 ~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 281 GI-VP---DGTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred Cc-cC---HHHHHHHHhhCcceEEecccCccccCCcccc
Confidence 88 22 2244444445777777777777766665553
No 340
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.5e-23 Score=230.82 Aligned_cols=202 Identities=19% Similarity=0.200 Sum_probs=158.1
Q ss_pred ccccceecccCccccccCCccc--CCCCCceEEEcccccCCCccc----cccccccccceEeeccccccCCchhhhcCCC
Q 001988 169 LRYLKHLFLRENMFYGKIPSSL--SKCKQLQELHLGYNNLSGAIP----KEIGNLTVLQRISLINNKLHGEIPQEIGYLQ 242 (985)
Q Consensus 169 l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~N~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 242 (985)
+++|++|++++|.+++..|..+ +++++|++|+|++|.+++..| ..+..+++|++|+|++|++++..|..|+.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 5678888888888888888888 888899999999999887655 3455788899999999999888888888899
Q ss_pred CCCEEEecCCcCccc--C--cccccCCCCCCEEEccCCcCcccCCh---hhhhcCCCCcEEEecCccCCCcCCccccCC-
Q 001988 243 NLDVLQLGFNNLTGV--V--PATIFNMSTLKEIFLYNNSLSGSLPS---RIDLALPNLEFLNLGINSFSGTIPSSITNA- 314 (985)
Q Consensus 243 ~L~~L~Ls~N~l~~~--~--p~~l~~l~~L~~L~L~~N~l~~~~p~---~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l- 314 (985)
+|++|+|++|++.+. + +..+..+++|++|+|++|+++ .++. .++..+++|++|+|++|++++..|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 999999999987652 2 233467888999999999887 3333 245578899999999999988878777776
Q ss_pred --CCccEEEccCcccccccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCC
Q 001988 315 --SKLILLEMGSNSFSGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLD 381 (985)
Q Consensus 315 --~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~ 381 (985)
++|++|+|++|+++ .+|..+. ++|++|++++|++++.+. +..+++|+.|++++|+++
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-------~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-------PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-------TTSCCCCSCEECSSTTTS
T ss_pred CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-------hhhCCCccEEECcCCCCC
Confidence 58888888888888 5566654 688888888888876532 345677777777777775
No 341
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=2.4e-23 Score=219.87 Aligned_cols=197 Identities=16% Similarity=0.164 Sum_probs=162.7
Q ss_pred cccceeccccccccccCCcCCCCCCccEEEccCCC-CCCCCCccccccccccceeccc-ccccCCchhhhhhccCCCeEE
Q 001988 394 SLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNN-LSGSIPVTFGGLQKLQGLDLAF-NKLAGSIPDEICLLSRLNELD 471 (985)
Q Consensus 394 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~ 471 (985)
++++|++++|++++..+..|..+++|++|++++|+ ++++.+.+|.++++|++|++++ |++++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 68888888888887777788888888888888886 8777777888888888888888 888876667788888888889
Q ss_pred ccCCccccccCCCCcCcCcCc---eEeeccc-eeeeecCCCccCcccee-EEeecCCcccCCccccccCCCcccEEEccC
Q 001988 472 LNGNKISGSISSCLGNLTSLQ---YLNLGSN-RFTFVIPSTFWNLKDIL-SFDISSNLLDGPISLAIGNLKAVVGIDLSR 546 (985)
Q Consensus 472 L~~N~l~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~p~~~~~l~~L~-~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 546 (985)
+++|++++ +|. |..+++|+ +|++++| +++++.+..|.++++|+ .|++++|+++.+.+..+.. ++|+.|+|++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 88888886 555 77788887 8999998 88888888888889999 9999999888666666666 8899999999
Q ss_pred Cc-cCccCchhhccc-ccceeeeeecceeccchhhhhhcccccCeEecCCCc
Q 001988 547 NN-LSGNIPTTLEGL-KSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNK 596 (985)
Q Consensus 547 N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 596 (985)
|+ +++..+..|.++ ++|+.|++++|++++..+. .+++|+.|+++++.
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 94 887777888888 9999999999999864443 56788899988763
No 342
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=9.6e-25 Score=248.34 Aligned_cols=244 Identities=20% Similarity=0.237 Sum_probs=137.4
Q ss_pred cCchhcccccccceecccCCcCCCCCC----cccccCCCCcEEEccCcccCCCCccccccCCccceeeeccccccCCCCh
Q 001988 88 TIPPEIANLSSLKSLDLSHNKLSSNIP----SSIFTMSTLKVLYLMDNQLSGSLSSFTFNTSSILDIRLSKNKLSGKLPE 163 (985)
Q Consensus 88 ~~~~~l~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~g~lp~ 163 (985)
.++..+..+++|++|+|++|.+++..+ ..+..+++|++|+|++|.+. ++.+.+|.
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~---------------------~l~~~~~~ 81 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG---------------------RVKDEIPE 81 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT---------------------SCGGGSHH
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccC---------------------ccccchhH
Confidence 455666777777777777777765433 33556777777777775432 33344444
Q ss_pred hH------hhhccccceecccCccccc----cCCcccCCCCCceEEEcccccCCCccccccc----cc---------ccc
Q 001988 164 NI------CNHLRYLKHLFLRENMFYG----KIPSSLSKCKQLQELHLGYNNLSGAIPKEIG----NL---------TVL 220 (985)
Q Consensus 164 ~~------~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~----~l---------~~L 220 (985)
.+ +..+++|++|+|++|.+++ .+|..+.++++|++|+|++|.+++..+..++ .+ ++|
T Consensus 82 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L 161 (386)
T 2ca6_A 82 ALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL 161 (386)
T ss_dssp HHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCC
Confidence 43 2445666666666666665 3555666666666666666666543333333 22 566
Q ss_pred ceEeecccccc-CCch---hhhcCCCCCCEEEecCCcCcc-----cCcccccCCCCCCEEEccCCcCc----ccCChhhh
Q 001988 221 QRISLINNKLH-GEIP---QEIGYLQNLDVLQLGFNNLTG-----VVPATIFNMSTLKEIFLYNNSLS----GSLPSRID 287 (985)
Q Consensus 221 ~~L~L~~N~l~-~~~p---~~~~~l~~L~~L~Ls~N~l~~-----~~p~~l~~l~~L~~L~L~~N~l~----~~~p~~~~ 287 (985)
++|++++|+++ +.+| ..+..+++|++|++++|+++. ..|..+..+++|++|+|++|.++ +.+|..+
T Consensus 162 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l- 240 (386)
T 2ca6_A 162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL- 240 (386)
T ss_dssp CEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG-
T ss_pred cEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH-
Confidence 66666666665 3344 345566666666666666652 23335566666666666666664 3344432
Q ss_pred hcCCCCcEEEecCccCCCc----CCccc--cCCCCccEEEccCccccc----ccCCcc-cCCCCCceEeccCCcccC
Q 001988 288 LALPNLEFLNLGINSFSGT----IPSSI--TNASKLILLEMGSNSFSG----FIPSAI-GNLRNLKLFDIFFNNLTS 353 (985)
Q Consensus 288 ~~l~~L~~L~Ls~N~l~~~----~p~~~--~~l~~L~~L~L~~N~l~~----~~p~~l-~~l~~L~~L~L~~N~l~~ 353 (985)
..+++|++|+|++|++++. ++..+ +.+++|+.|+|++|.+++ .+|..+ .++++|++|++++|+++.
T Consensus 241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 3455666666666665543 33444 225556666666665554 244444 344555555555555543
No 343
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=6.2e-23 Score=218.40 Aligned_cols=180 Identities=23% Similarity=0.306 Sum_probs=97.7
Q ss_pred CccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCceEeec
Q 001988 418 NLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLG 497 (985)
Q Consensus 418 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 497 (985)
+.++++++++.++ .+|..+. ++|+.|+|++|.+++..+..+..+++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4556666666666 3333332 356666666666665555555556666666666666655555555555555555555
Q ss_pred cceeeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccch
Q 001988 498 SNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPI 577 (985)
Q Consensus 498 ~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 577 (985)
+|+++++.+..|..+++|++|++++|+|++..+ ..|..+++|++|+|++|+|++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------------------------~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS------------------------GVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------------------------TTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcCh------------------------hHhccCCcccEEECcCCcCCccC
Confidence 555555554555555555555555555544444 44445555555555555555444
Q ss_pred hhhhhcccccCeEecCCCcccCCCCccccccccccccccccccccCC
Q 001988 578 PESFGNMTSLESLDLSNNKISGSIPVSFEKLSYLKELNLSFNKLKGE 624 (985)
Q Consensus 578 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 624 (985)
+..|..+++|++|+|++|+|++..+..|..+++|+.|++++|++++.
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 44455555555555555555544444555555555555555555544
No 344
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=2.4e-24 Score=245.08 Aligned_cols=235 Identities=21% Similarity=0.280 Sum_probs=159.3
Q ss_pred CeEEEEEecCCcccccCc----hhcccccccceecccCC---cCCCCCCccc-------ccCCCCcEEEccCcccCC---
Q 001988 73 HKVTTLNLSSFNLQGTIP----PEIANLSSLKSLDLSHN---KLSSNIPSSI-------FTMSTLKVLYLMDNQLSG--- 135 (985)
Q Consensus 73 ~~v~~l~L~~~~l~g~~~----~~l~~l~~L~~L~L~~n---~l~~~~p~~~-------~~l~~L~~L~Ls~n~l~~--- 135 (985)
.+++.|+|++|++++..+ ..+..+++|++|+|++| ++++.+|..+ ..+++|++|+|++|.+++
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 358899999999987644 45778999999999995 5666778766 688999999999999987
Q ss_pred -CCccccccCCccceeeeccccccCCCChhHhhhc------------cccceecccCcccc-ccCC---cccCCCCCceE
Q 001988 136 -SLSSFTFNTSSILDIRLSKNKLSGKLPENICNHL------------RYLKHLFLRENMFY-GKIP---SSLSKCKQLQE 198 (985)
Q Consensus 136 -~~~~~~~~~~~L~~L~ls~n~l~g~lp~~~~~~l------------~~L~~L~L~~n~l~-~~~p---~~l~~l~~L~~ 198 (985)
.++..+..+++|++|+|++|.+.+..+..+...+ ++|++|+|++|.++ +.+| ..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 4666777788888888888888654444443222 66777777777765 3344 35556667777
Q ss_pred EEcccccCC--C---ccccccccccccceEeecccccc----CCchhhhcCCCCCCEEEecCCcCccc----Cccccc--
Q 001988 199 LHLGYNNLS--G---AIPKEIGNLTVLQRISLINNKLH----GEIPQEIGYLQNLDVLQLGFNNLTGV----VPATIF-- 263 (985)
Q Consensus 199 L~L~~N~l~--~---~~p~~~~~l~~L~~L~L~~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~-- 263 (985)
|+|++|+++ | .+|..+..+++|++|+|++|+++ +.+|..+..+++|++|+|++|.+++. +|..+.
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 777777666 2 33445666666677777766664 45666666666666666666666654 344442
Q ss_pred CCCCCCEEEccCCcCcc----cCChhhhhcCCCCcEEEecCccCCCcC
Q 001988 264 NMSTLKEIFLYNNSLSG----SLPSRIDLALPNLEFLNLGINSFSGTI 307 (985)
Q Consensus 264 ~l~~L~~L~L~~N~l~~----~~p~~~~~~l~~L~~L~Ls~N~l~~~~ 307 (985)
.+++|++|+|++|.+++ .+|..++..+++|++|+|++|++++..
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 26666666666666664 355555445566666666666655443
No 345
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=4.8e-23 Score=226.14 Aligned_cols=210 Identities=22% Similarity=0.362 Sum_probs=147.3
Q ss_pred ceeccccccccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCCc
Q 001988 397 RLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNK 476 (985)
Q Consensus 397 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 476 (985)
.+.+..+.+++.+ .+..+++|++|++++|.++.. | .+..+++|++|++++|.+++..+ +..+++|++|+|++|+
T Consensus 23 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~ 96 (308)
T 1h6u_A 23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP 96 (308)
T ss_dssp HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC
T ss_pred HHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc
Confidence 3444455544332 234566777777777777642 3 46667777777777777764433 6677777777777777
Q ss_pred cccccCCCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccCchh
Q 001988 477 ISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTT 556 (985)
Q Consensus 477 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 556 (985)
+++. ..+..+++|++|++++|+++++.+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++..+
T Consensus 97 l~~~--~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-- 168 (308)
T 1h6u_A 97 LKNV--SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-- 168 (308)
T ss_dssp CSCC--GGGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred CCCc--hhhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--
Confidence 7653 246777777777777777776432 6777777777777777776654 7777888888888888875433
Q ss_pred hcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCccccccccccccccccccccCC
Q 001988 557 LEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKLSYLKELNLSFNKLKGE 624 (985)
Q Consensus 557 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 624 (985)
+..+++|+.|+|++|++++..+ +..+++|+.|+|++|++++..| +..+++|+.|++++|++++.
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 7788888888888888886544 7788888888888888886543 77888888888888888753
No 346
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=3.7e-23 Score=243.37 Aligned_cols=204 Identities=24% Similarity=0.325 Sum_probs=125.5
Q ss_pred CCCCCCcc-----eeeeE-EEeCCCCeEEEEEecCCcccccCchhcccccccceecccCCcCCCCCCcccccCCCCcEEE
Q 001988 54 WTSNASIC-----SWIGI-ICDVNSHKVTTLNLSSFNLQGTIPPEIANLSSLKSLDLSHNKLSSNIPSSIFTMSTLKVLY 127 (985)
Q Consensus 54 w~~~~~~c-----~w~gv-~c~~~~~~v~~l~L~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 127 (985)
|..+.++| .|.|+ .|.. .+++.|+|++|++++ +|+.+. ++|++|+|++|.|+ .+| ..+++|++|+
T Consensus 36 W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~ 106 (571)
T 3cvr_A 36 WEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLD 106 (571)
T ss_dssp HHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEE
T ss_pred HhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEE
Confidence 66556667 79999 7864 368899999999987 887664 78999999999998 678 4578888999
Q ss_pred ccCcccCCCCccccccCCccceeeeccccccCCCChhHhhhccccceecccCccccccCCcccCCCCCceEEEcccccCC
Q 001988 128 LMDNQLSGSLSSFTFNTSSILDIRLSKNKLSGKLPENICNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLS 207 (985)
Q Consensus 128 Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~g~lp~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~ 207 (985)
|++|+|++ +|. +.. +|+.|+|++|++++ +|. .+++|++|+|++|.+++ +|. .+++|++|+|++|+|+
T Consensus 107 Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 107 ACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp CCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred ccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence 98888886 444 322 55555555555554 444 24455555555555543 443 3344455555555544
Q ss_pred CccccccccccccceEeeccccccCCchhhhcCCCCCCEEEecCCcCcccCcccccCCCCC-------CEEEccCCcCcc
Q 001988 208 GAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGFNNLTGVVPATIFNMSTL-------KEIFLYNNSLSG 280 (985)
Q Consensus 208 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L-------~~L~L~~N~l~~ 280 (985)
+ +|. |+ ++|++|+|++|+|+ .+|. +.. +| +.|+|++|+|+
T Consensus 174 ~-lp~-l~--------------------------~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~- 220 (571)
T 3cvr_A 174 F-LPE-LP--------------------------ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT- 220 (571)
T ss_dssp C-CCC-CC--------------------------TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-
T ss_pred C-cch-hh--------------------------CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-
Confidence 3 333 33 44555555555554 3333 322 34 66666666665
Q ss_pred cCChhhhhcCCCCcEEEecCccCCCcCCccccC
Q 001988 281 SLPSRIDLALPNLEFLNLGINSFSGTIPSSITN 313 (985)
Q Consensus 281 ~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 313 (985)
.+|..++. +++|+.|+|++|.+++.+|..+..
T Consensus 221 ~lp~~l~~-l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 221 HIPENILS-LDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CCCGGGGG-SCTTEEEECCSSSCCHHHHHHHHH
T ss_pred ecCHHHhc-CCCCCEEEeeCCcCCCcCHHHHHH
Confidence 45655543 666666666666666666665554
No 347
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=2.2e-22 Score=220.94 Aligned_cols=190 Identities=26% Similarity=0.380 Sum_probs=122.7
Q ss_pred cccceeccccccccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEcc
Q 001988 394 SLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLN 473 (985)
Q Consensus 394 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 473 (985)
+|+.|++++|.++. ++ .+..+++|++|+|++|++++..+ +..+++|++|+|++|++++. + .+..+++|++|+|+
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECC
Confidence 34444444444442 22 35556666666666666665443 66666666666666666643 2 46666667777777
Q ss_pred CCccccccCCCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccC
Q 001988 474 GNKISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNI 553 (985)
Q Consensus 474 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 553 (985)
+|++++.. .+..+++|++|++++|+++++.+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++..
T Consensus 116 ~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 116 STQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp TSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcCh
Confidence 77666532 26666777777777777665544 6666777777777777766544 667777777777777777543
Q ss_pred chhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccC
Q 001988 554 PTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISG 599 (985)
Q Consensus 554 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 599 (985)
+ +..+++|++|+|++|++++..| +..+++|+.|+|++|++++
T Consensus 190 ~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 190 P--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp G--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred h--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 3 6777777788888887776543 7777778888888887774
No 348
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=8.5e-22 Score=220.56 Aligned_cols=243 Identities=15% Similarity=0.150 Sum_probs=146.2
Q ss_pred ceeeeEEEeCCCCeEEEEEecCCcccccCchhcccccccceecccCCcCCCCCCcccccCCCCcEEEccCcccCCCCccc
Q 001988 61 CSWIGIICDVNSHKVTTLNLSSFNLQGTIPPEIANLSSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQLSGSLSSF 140 (985)
Q Consensus 61 c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~ 140 (985)
|+|..|.|+ +++++ .+|..+ .+++++|+|++|+|+...+..|.++++|++|+|++|++.+
T Consensus 9 C~~~~v~C~------------~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~----- 68 (350)
T 4ay9_X 9 CSNRVFLCQ------------ESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE----- 68 (350)
T ss_dssp EETTEEEEE------------STTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC-----
T ss_pred eeCCEEEec------------CCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC-----
Confidence 677777775 34555 677665 3578888888888884333467778888888887777654
Q ss_pred cccCCccceeeeccccccCCCChhHhhhccccce-ecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccc
Q 001988 141 TFNTSSILDIRLSKNKLSGKLPENICNHLRYLKH-LFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTV 219 (985)
Q Consensus 141 ~~~~~~L~~L~ls~n~l~g~lp~~~~~~l~~L~~-L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 219 (985)
.+|...|.++++|++ ++++.|++++..|..|.++++|++|++++|++++..+..+....+
T Consensus 69 -------------------~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 129 (350)
T 4ay9_X 69 -------------------VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129 (350)
T ss_dssp -------------------EECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSS
T ss_pred -------------------ccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccch
Confidence 344444455555443 455566676566677777777777777777777655555666666
Q ss_pred cceEeecc-ccccCCchhhhcCCC-CCCEEEecCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEE
Q 001988 220 LQRISLIN-NKLHGEIPQEIGYLQ-NLDVLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLN 297 (985)
Q Consensus 220 L~~L~L~~-N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~ 297 (985)
+..|++.+ |++....+..|..+. .+++|+|++|+|+. +|...+...+|++|++++|+..+.+|...+..+++|++|+
T Consensus 130 l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~Ld 208 (350)
T 4ay9_X 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208 (350)
T ss_dssp CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEE
T ss_pred hhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhh
Confidence 77777754 455544444555554 46777777777773 4444445566777777643333366666666666677777
Q ss_pred ecCccCCCcCCccccCCCCccEEEccCcccccccCCcccCCCCCceEecc
Q 001988 298 LGINSFSGTIPSSITNASKLILLEMGSNSFSGFIPSAIGNLRNLKLFDIF 347 (985)
Q Consensus 298 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 347 (985)
|++|+|+...+..+. +|+.|.+.++.--..+| .+.++++|+.+++.
T Consensus 209 Ls~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 209 ISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLP-TLEKLVALMEASLT 254 (350)
T ss_dssp CTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCC-CTTTCCSCCEEECS
T ss_pred cCCCCcCccChhhhc---cchHhhhccCCCcCcCC-CchhCcChhhCcCC
Confidence 777666643333333 33333333322222333 24445555555544
No 349
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=7.7e-22 Score=220.91 Aligned_cols=200 Identities=16% Similarity=0.127 Sum_probs=110.6
Q ss_pred cEEEecCCCCCccCCCCccchhhcccceeccccccccccCCcCCCCCCccEEEccCCCCCCCCC-ccccccccccc-eec
Q 001988 371 RYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIP-VTFGGLQKLQG-LDL 448 (985)
Q Consensus 371 ~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~-L~L 448 (985)
+.++.++++++ .+|..+ +.++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+| .+|.+++++.. +++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56777777776 455544 2356677777777765555566667777777777776654333 45666665543 445
Q ss_pred ccccccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCceEeecc-ceeeeecCCCccCcc-ceeEEeecCCccc
Q 001988 449 AFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGS-NRFTFVIPSTFWNLK-DILSFDISSNLLD 526 (985)
Q Consensus 449 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~-~L~~L~ls~N~l~ 526 (985)
+.|+|++..|..|..+++|++|++++|++++..+..+....++..|++.+ |+++.+.+..|..+. .++.|++++|+|+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 55666655555566666666666666666655555555555555565543 455555555555443 3555555555555
Q ss_pred CCccccccCCCcccEEEccC-CccCccCchhhcccccceeeeeecceecc
Q 001988 527 GPISLAIGNLKAVVGIDLSR-NNLSGNIPTTLEGLKSLQNISLAYNRLEG 575 (985)
Q Consensus 527 ~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 575 (985)
.+.+..|. ..+|+.|++++ |.++.+.+..|.++++|++|+|++|+|+.
T Consensus 168 ~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 168 EIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp EECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred CCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 44333332 23455555543 33443333344555555555555555553
No 350
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.86 E-value=1.1e-21 Score=211.79 Aligned_cols=151 Identities=16% Similarity=0.155 Sum_probs=121.2
Q ss_pred HHHHHHhcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCc------------------chHHHHHHHHHHHHhcC
Q 001988 719 FELLRATDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCA------------------STLKSFEAECEVIKNIR 780 (985)
Q Consensus 719 ~~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~------------------~~~~~~~~E~~il~~l~ 780 (985)
..+......|...+.||+|+||.||+|...+|+.||+|+++.... .....+.+|++++++++
T Consensus 83 ~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~ 162 (282)
T 1zar_A 83 HRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ 162 (282)
T ss_dssp HHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc
Confidence 344555666778899999999999999998899999999975321 12456889999999999
Q ss_pred CCCeeeEEeeeecCCceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEc
Q 001988 781 HRNLVKIISSCSNDDFKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLD 860 (985)
Q Consensus 781 h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~ 860 (985)
| +++.+++.. +..++||||++||+|.+ +... ....++.|++.||+|| |++||+||||||+|||++
T Consensus 163 --~-~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~~~-------~~~~i~~qi~~~l~~l---H~~giiHrDlkp~NILl~ 227 (282)
T 1zar_A 163 --G-LAVPKVYAW-EGNAVLMELIDAKELYR-VRVE-------NPDEVLDMILEEVAKF---YHRGIVHGDLSQYNVLVS 227 (282)
T ss_dssp --T-SSSCCEEEE-ETTEEEEECCCCEEGGG-CCCS-------CHHHHHHHHHHHHHHH---HHTTEECSCCSTTSEEEE
T ss_pred --C-CCcCeEEec-cceEEEEEecCCCcHHH-cchh-------hHHHHHHHHHHHHHHH---HHCCCEeCCCCHHHEEEE
Confidence 4 566665543 55699999999999998 4321 2346999999999999 789999999999999999
Q ss_pred CCCcEEEecccCceeccCCCCcceeccccccccccccccc
Q 001988 861 EDMVAHLSDFGMAKLLSGEDESTMRTQTLATIGYMAPDEI 900 (985)
Q Consensus 861 ~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~ 900 (985)
++.+||+|||+|+. +..|+|||.+
T Consensus 228 -~~~vkl~DFG~a~~---------------~~~~~a~e~l 251 (282)
T 1zar_A 228 -EEGIWIIDFPQSVE---------------VGEEGWREIL 251 (282)
T ss_dssp -TTEEEECCCTTCEE---------------TTSTTHHHHH
T ss_pred -CCcEEEEECCCCeE---------------CCCCCHHHHH
Confidence 99999999999864 3357888875
No 351
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=5e-21 Score=197.40 Aligned_cols=186 Identities=25% Similarity=0.305 Sum_probs=112.5
Q ss_pred CcceeeeEEEeCCCCeEEEEEecCCcccccCchhcccccccceecccCCcCCCCCCcccccCCCCcEEEccCcccCCCCc
Q 001988 59 SICSWIGIICDVNSHKVTTLNLSSFNLQGTIPPEIANLSSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQLSGSLS 138 (985)
Q Consensus 59 ~~c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~ 138 (985)
..|.|.+|.|+.. +++ .+|..+ .++|++|+|++|++++..+..+..+++|++|+|++|+++
T Consensus 5 C~C~~~~v~c~~~------------~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---- 65 (208)
T 2o6s_A 5 CSCSGTTVECYSQ------------GRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ---- 65 (208)
T ss_dssp CEEETTEEECCSS------------CCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC----
T ss_pred CEECCCEEEecCC------------Ccc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC----
Confidence 4589999999643 233 344333 346777777777776544444555555555555555444
Q ss_pred cccccCCccceeeeccccccCCCChhHhhhccccceecccCccccccCCcccCCCCCceEEEcccccCCCcccccccccc
Q 001988 139 SFTFNTSSILDIRLSKNKLSGKLPENICNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLT 218 (985)
Q Consensus 139 ~~~~~~~~L~~L~ls~n~l~g~lp~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 218 (985)
+..+..|.++++|++|+|++|++++..+..|++++
T Consensus 66 ---------------------------------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 100 (208)
T 2o6s_A 66 ---------------------------------------------SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT 100 (208)
T ss_dssp ---------------------------------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ---------------------------------------------ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc
Confidence 22233345555555555555555544444455566
Q ss_pred ccceEeeccccccCCchhhhcCCCCCCEEEecCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEe
Q 001988 219 VLQRISLINNKLHGEIPQEIGYLQNLDVLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNL 298 (985)
Q Consensus 219 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L 298 (985)
+|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+.+ .+++|++|++
T Consensus 101 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~ 172 (208)
T 2o6s_A 101 QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSE 172 (208)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHH
T ss_pred CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHH
Confidence 66666666666655555556666666666666666665555556666677777777776653 3456777777
Q ss_pred cCccCCCcCCccccCCCC
Q 001988 299 GINSFSGTIPSSITNASK 316 (985)
Q Consensus 299 s~N~l~~~~p~~~~~l~~ 316 (985)
+.|+++|.+|..++.++.
T Consensus 173 ~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 173 WINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp HHHHCTTTBBCTTSSBCT
T ss_pred HHHhCCceeeccCccccC
Confidence 888888877777766544
No 352
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.84 E-value=1.4e-22 Score=247.54 Aligned_cols=219 Identities=21% Similarity=0.260 Sum_probs=85.6
Q ss_pred CChhHHHHHHHHHHhcccCCCCcccCCCC-CCCCcceeeeEEEeCCCCeEEEEEecCCcccccCchhcccccccceeccc
Q 001988 27 NISTDQQALLALKDHITYDPTNLLGTNWT-SNASICSWIGIICDVNSHKVTTLNLSSFNLQGTIPPEIANLSSLKSLDLS 105 (985)
Q Consensus 27 ~~~~~~~aLl~~k~~~~~~~~~~~~s~w~-~~~~~c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~l~~l~~L~~L~L~ 105 (985)
....++++|+++.............. |. ..+..+.|.+++++. .+|+.|+|.++++.. ++..+ |+.++|+
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~-~~~~~-----l~~l~Ls 199 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQ-PTGDSTPSGTATNSAVST--PLTPKIELFANGKDE-ANQAL-----LQHKKLS 199 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCC-CcCCCCccccCCCceecC--CccceEEeeCCCCCc-chhhH-----hhcCccC
Confidence 44678999999998875443333333 64 345668899998865 579999999998885 34333 3444555
Q ss_pred CCcCCC---------CCCcccccCCCCcEEEccCcccCCCCccccccCCccceeeeccccccCCCChhHhhhccccceec
Q 001988 106 HNKLSS---------NIPSSIFTMSTLKVLYLMDNQLSGSLSSFTFNTSSILDIRLSKNKLSGKLPENICNHLRYLKHLF 176 (985)
Q Consensus 106 ~n~l~~---------~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~g~lp~~~~~~l~~L~~L~ 176 (985)
.|.+++ ..|..+..++.|++|+|++|.+. .+|..++ .+++|++|+
T Consensus 200 ~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-------------------------~l~~~~~-~l~~L~~L~ 253 (727)
T 4b8c_D 200 QYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-------------------------NISANIF-KYDFLTRLY 253 (727)
T ss_dssp ----------------------CCCCCCEEECTTSCCS-------------------------CCCGGGG-GCCSCSCCB
T ss_pred cccccCccccccceecChhhhccCCCCcEEECCCCCCC-------------------------CCChhhc-CCCCCCEEE
Confidence 554442 23555556666666666666555 4444443 455555555
Q ss_pred ccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEEEecCCcCcc
Q 001988 177 LRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGFNNLTG 256 (985)
Q Consensus 177 L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 256 (985)
|++|.|+ .+|+.|+++++|++|+|++|+|+ .+|..|++|++|++|+|++|.|+ .+|..|+.|++|++|+|++|.|++
T Consensus 254 Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 254 LNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred eeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence 5555555 55555555555555555555555 44555555555555555555554 445555555555555555555555
Q ss_pred cCcccccCCCC-CCEEEccCCcCcccCC
Q 001988 257 VVPATIFNMST-LKEIFLYNNSLSGSLP 283 (985)
Q Consensus 257 ~~p~~l~~l~~-L~~L~L~~N~l~~~~p 283 (985)
.+|..+..+.. +..|+|++|.+++.+|
T Consensus 331 ~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 331 QFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CChHHHhhcchhhhHHhhccCcccCcCc
Confidence 55544433211 1123444444444333
No 353
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=2.2e-21 Score=228.28 Aligned_cols=189 Identities=25% Similarity=0.326 Sum_probs=150.2
Q ss_pred CCcEEEccCcccCCCCccccccCCccceeeeccccccCCCChhHhhhccccceecccCccccccCCcccCCCCCceEEEc
Q 001988 122 TLKVLYLMDNQLSGSLSSFTFNTSSILDIRLSKNKLSGKLPENICNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHL 201 (985)
Q Consensus 122 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~g~lp~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 201 (985)
+|++|+|++|++++ +|..+ .++|++|+|++|+|+ .+| ..+++|++|+|++|.|++ +|. +.+ +|++|+|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 55555555555554 33322 145566666666665 566 336889999999999986 787 765 8999999
Q ss_pred ccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEEEecCCcCcccCcccccCCCCCCEEEccCCcCccc
Q 001988 202 GYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGS 281 (985)
Q Consensus 202 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 281 (985)
++|+|++ +|. .+++|+.|+|++|+|++ +|. .+++|++|+|++|+|++ +|. |. ++|+.|+|++|+|+ .
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 9999996 776 67899999999999996 665 57899999999999997 676 65 89999999999999 7
Q ss_pred CChhhhhcCCCC-------cEEEecCccCCCcCCccccCCCCccEEEccCcccccccCCcccCCCC
Q 001988 282 LPSRIDLALPNL-------EFLNLGINSFSGTIPSSITNASKLILLEMGSNSFSGFIPSAIGNLRN 340 (985)
Q Consensus 282 ~p~~~~~~l~~L-------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 340 (985)
+|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|.+++.+|..+..++.
T Consensus 195 lp~-~~~---~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 195 LPA-VPV---RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hhh-HHH---hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 887 432 66 99999999999 68888889999999999999999999998887654
No 354
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=6.5e-21 Score=196.56 Aligned_cols=158 Identities=23% Similarity=0.218 Sum_probs=75.3
Q ss_pred CccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCceEeec
Q 001988 418 NLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLG 497 (985)
Q Consensus 418 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 497 (985)
+|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|++|+|++|++++..+..|.++++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 45555555555554444445555555555555555554444444455555555555555554444444555555555555
Q ss_pred cceeeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccch
Q 001988 498 SNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPI 577 (985)
Q Consensus 498 ~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 577 (985)
+|+++++.+..|..+++|++|++++|++++..+..+..+++|+.|++++|.+.+. +++|++|+++.|+++|.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCcee
Confidence 5555544444444444444444444444444333344444444444444443321 223444444444444444
Q ss_pred hhhhh
Q 001988 578 PESFG 582 (985)
Q Consensus 578 p~~~~ 582 (985)
|.+++
T Consensus 182 p~~~~ 186 (208)
T 2o6s_A 182 RNSAG 186 (208)
T ss_dssp BCTTS
T ss_pred eccCc
Confidence 44443
No 355
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=2.2e-20 Score=195.46 Aligned_cols=161 Identities=25% Similarity=0.308 Sum_probs=97.2
Q ss_pred CCCCCCcceeeeEEEeCCCCeEEEEEecCCcccccCchhcccccccceecccCCcCCCCCCcccccCCCCcEEEccCccc
Q 001988 54 WTSNASICSWIGIICDVNSHKVTTLNLSSFNLQGTIPPEIANLSSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQL 133 (985)
Q Consensus 54 w~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 133 (985)
|..+.+.|+|.+|.|+.. +++ .+|..+. ++|++|+|++|.+++..|..+..+++|++|+|++|++
T Consensus 12 ~~~~~~~Cs~~~v~c~~~------------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l 76 (229)
T 3e6j_A 12 ACPSQCSCSGTTVDCRSK------------RHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL 76 (229)
T ss_dssp CCCTTCEEETTEEECTTS------------CCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCCCEEeCCEeEccCC------------CcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC
Confidence 445678899999999643 333 5666544 7888899999888887788888888888888877777
Q ss_pred CCCCccccccCCccceeeeccccccCCCChhHhhhccccceecccCccccccCCcccCCCCCceEEEcccccCCCccccc
Q 001988 134 SGSLSSFTFNTSSILDIRLSKNKLSGKLPENICNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKE 213 (985)
Q Consensus 134 ~~~~~~~~~~~~~L~~L~ls~n~l~g~lp~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 213 (985)
+ .+|...+..+++|++|+|++|.+++..+..|..+++|++|+|++|+|+ .+|..
T Consensus 77 ~-------------------------~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 130 (229)
T 3e6j_A 77 G-------------------------ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRG 130 (229)
T ss_dssp C-------------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTT
T ss_pred C-------------------------CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcc
Confidence 5 333333344555555555555555444444555555555555555555 44555
Q ss_pred cccccccceEeeccccccCCchhhhcCCCCCCEEEecCCcCc
Q 001988 214 IGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGFNNLT 255 (985)
Q Consensus 214 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 255 (985)
+.++++|++|+|++|+|++..+..|..+++|++|+|++|.+.
T Consensus 131 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 131 IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 555555555555555555433344444444444444444444
No 356
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.83 E-value=4.2e-22 Score=235.87 Aligned_cols=235 Identities=22% Similarity=0.220 Sum_probs=143.8
Q ss_pred eeeeEEEeCCCCeEEEEEecCCcccc-------------------------cCch---hcccccccceecccCCcCCCCC
Q 001988 62 SWIGIICDVNSHKVTTLNLSSFNLQG-------------------------TIPP---EIANLSSLKSLDLSHNKLSSNI 113 (985)
Q Consensus 62 ~w~gv~c~~~~~~v~~l~L~~~~l~g-------------------------~~~~---~l~~l~~L~~L~L~~n~l~~~~ 113 (985)
.|.++.|+...++|..++++.-.+.- ..+. .+..+++|+.|+|++|+++ .+
T Consensus 286 ~W~~~~~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~L~~L~Ls~n~L~-~L 364 (567)
T 1dce_A 286 EWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VL 364 (567)
T ss_dssp CCBCTTSSCCSEEEEEEECCGGGTSTTSSEEEEEEEETTTTEEEEEEEETTCSEEEEECCSTTTTSSSCCCCHHHHH-HH
T ss_pred eeccCCcccccceeEEeecCccccccccccceEEEeeccCCCCccccccCCCchhhhcccccCccceeccCChhhHH-hh
Confidence 47777777666777777776543321 1111 1367889999999999997 79
Q ss_pred CcccccCCCCcEEEccCcc-------------cCCCCccccccCCccceee-eccccccCCCChhHhhhccccceecccC
Q 001988 114 PSSIFTMSTLKVLYLMDNQ-------------LSGSLSSFTFNTSSILDIR-LSKNKLSGKLPENICNHLRYLKHLFLRE 179 (985)
Q Consensus 114 p~~~~~l~~L~~L~Ls~n~-------------l~~~~~~~~~~~~~L~~L~-ls~n~l~g~lp~~~~~~l~~L~~L~L~~ 179 (985)
|++++.|++|++|++++|. +.+.+|..+..+++|+.|+ ++.|.+. +|+.+.+++
T Consensus 365 p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~------------~L~~l~l~~ 432 (567)
T 1dce_A 365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD------------DLRSKFLLE 432 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc------------hhhhhhhhc
Confidence 9999999999999998775 4566666677777777777 5555432 233334444
Q ss_pred ccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEEEecCCcCcccCc
Q 001988 180 NMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGFNNLTGVVP 259 (985)
Q Consensus 180 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 259 (985)
|.+++ +|. ..|++|+|++|+|++ +|. |+++++|+.|+|++|+|+ .+|..|+.+++|++|+|++|+|++ +|
T Consensus 433 n~i~~-l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp 502 (567)
T 1dce_A 433 NSVLK-MEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD 502 (567)
T ss_dssp HHHHH-HHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG
T ss_pred ccccc-cCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc
Confidence 44442 111 135566666666664 454 666666666666666666 556666666666666666666664 44
Q ss_pred ccccCCCCCCEEEccCCcCcccC-ChhhhhcCCCCcEEEecCccCCCcCCcc---ccCCCCccEEE
Q 001988 260 ATIFNMSTLKEIFLYNNSLSGSL-PSRIDLALPNLEFLNLGINSFSGTIPSS---ITNASKLILLE 321 (985)
Q Consensus 260 ~~l~~l~~L~~L~L~~N~l~~~~-p~~~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~ 321 (985)
.+.++++|++|+|++|+|++.. |..+ ..+++|+.|+|++|++++.+|.. +..+++|+.|+
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l-~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSAAIQPL-VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSSTTGGG-GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred -ccCCCCCCcEEECCCCCCCCCCCcHHH-hcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 5666666666666666666443 4443 35666666666666666443321 22355666654
No 357
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=9.5e-21 Score=196.84 Aligned_cols=135 Identities=27% Similarity=0.325 Sum_probs=79.2
Q ss_pred ceEeeccceeeeecC-CCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeec
Q 001988 492 QYLNLGSNRFTFVIP-STFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAY 570 (985)
Q Consensus 492 ~~L~L~~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 570 (985)
++|+|++|+|+++.| ..|..+++|++|++++|+|+++.+..|..+++|+.|+|++|+|++..|..|.++++|++|+|++
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 114 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT
T ss_pred CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC
Confidence 444444444444422 2344445555555555555544444555555556666666666555555566666666666666
Q ss_pred ceeccchhhhhhcccccCeEecCCCcccCCCCccccccccccccccccccccCCCC
Q 001988 571 NRLEGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKLSYLKELNLSFNKLKGEIP 626 (985)
Q Consensus 571 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 626 (985)
|+|++..|..|..+++|++|+|++|+|++..|..|..+++|++|++++|++.+.++
T Consensus 115 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 115 NRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 66666556666666666666666666666666666666666666666666666554
No 358
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=2.8e-20 Score=209.08 Aligned_cols=176 Identities=22% Similarity=0.219 Sum_probs=107.7
Q ss_pred cEEEccCCCCCCCCCccccccccccceecccccccCCchhhhh-hccCCCeEEccCCccccccCCCCcCcCcCceEeecc
Q 001988 420 IVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEIC-LLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGS 498 (985)
Q Consensus 420 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 498 (985)
+.+++++|+++. +|..+. ..++.|+|++|+|++..+..+. .+++|+.|+|++|+|++..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 467777777764 444332 3466677777777665555555 666677777777777666666666666677777776
Q ss_pred ceeeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccCchhh---cccccceeeeeecceecc
Q 001988 499 NRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTL---EGLKSLQNISLAYNRLEG 575 (985)
Q Consensus 499 N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~ 575 (985)
|+|+.+.+..|.++++|+.|++++|+|.++.+..|..+++|+.|+|++|+|++..+..| ..+++|+.|+|++|+|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 66666666666666666666666666666656666666666666666666664433333 345566666666666665
Q ss_pred chhhhhhcccc--cCeEecCCCccc
Q 001988 576 PIPESFGNMTS--LESLDLSNNKIS 598 (985)
Q Consensus 576 ~~p~~~~~l~~--L~~L~Ls~N~l~ 598 (985)
..+..|..++. |+.|+|++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 55555555554 255566665554
No 359
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=4.1e-20 Score=200.88 Aligned_cols=172 Identities=26% Similarity=0.328 Sum_probs=91.4
Q ss_pred CCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCce
Q 001988 414 GNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQY 493 (985)
Q Consensus 414 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 493 (985)
..+++|++|++++|.+... + .+..+++|++|++++|++++..+ +..+++|++|+|++|++++. + .+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-h-hhccCCCCCE
Confidence 3455566666666666533 2 25555666666666666654333 55555566666666655532 1 2555555555
Q ss_pred EeeccceeeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeeccee
Q 001988 494 LNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRL 573 (985)
Q Consensus 494 L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 573 (985)
|++++|+++++ . .+..+++|+.|++++|++++. ..++.+++|+.|+|++|++
T Consensus 117 L~L~~n~i~~~--~------------------------~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 117 LSLEHNGISDI--N------------------------GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp EECTTSCCCCC--G------------------------GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred EECCCCcCCCC--h------------------------hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcc
Confidence 55555555442 2 244444555555555555433 3455555555555555555
Q ss_pred ccchhhhhhcccccCeEecCCCcccCCCCccccccccccccccccccccC
Q 001988 574 EGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKLSYLKELNLSFNKLKG 623 (985)
Q Consensus 574 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 623 (985)
++..| +..+++|+.|+|++|+|++ +| .+..+++|+.|++++|+++.
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred ccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 54433 5555555566666665553 23 25555566666666665554
No 360
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=3e-20 Score=193.09 Aligned_cols=152 Identities=18% Similarity=0.260 Sum_probs=88.1
Q ss_pred cceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCC
Q 001988 444 QGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSN 523 (985)
Q Consensus 444 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N 523 (985)
+.+++++|.++ .+|..+. ++|+.|+|++|+|++..+..|..+++|++|+|++|+|+++.|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45666666666 3444332 45666666666666655556666666666666666666666666666666666666666
Q ss_pred cccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCccc
Q 001988 524 LLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKIS 598 (985)
Q Consensus 524 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 598 (985)
+|+.+.+..|..+++|+.|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 665555555555555555555555555555555555555555555555555444444555555555555555544
No 361
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=9.2e-20 Score=198.13 Aligned_cols=190 Identities=22% Similarity=0.301 Sum_probs=145.2
Q ss_pred ccccceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCceEeeccceeeeecCCCccCccceeEEee
Q 001988 441 QKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDI 520 (985)
Q Consensus 441 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~l 520 (985)
.++..+.+..+.+.+..+ +..+++|+.|++++|.+++. + .+..+++|++|++++|++++..+ +..+++|++|++
T Consensus 24 ~~~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l 97 (291)
T 1h6t_A 24 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFL 97 (291)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEEC
Confidence 344555566666554322 34566677777777777643 2 36667777777777777776554 677777777777
Q ss_pred cCCcccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCC
Q 001988 521 SSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGS 600 (985)
Q Consensus 521 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 600 (985)
++|+++++. .+..+++|+.|++++|+|++. ..+..+++|++|++++|++++. ..+..+++|+.|+|++|++++.
T Consensus 98 ~~n~l~~~~--~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 98 DENKVKDLS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp CSSCCCCGG--GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCCcCCCCh--hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence 777777643 388899999999999999864 5789999999999999999975 5799999999999999999976
Q ss_pred CCccccccccccccccccccccCCCCCCCCCcccccccccCCccc
Q 001988 601 IPVSFEKLSYLKELNLSFNKLKGEIPRGGPFANFTAESFMGNELL 645 (985)
Q Consensus 601 ~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l 645 (985)
.| +..+++|+.|++++|++++. |....+.++....+.+|+..
T Consensus 172 ~~--l~~l~~L~~L~L~~N~i~~l-~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 172 VP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEEEEEEEE
T ss_pred hh--hcCCCccCEEECCCCcCCCC-hhhccCCCCCEEECcCCccc
Confidence 55 99999999999999999974 54556677777777787643
No 362
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=1.7e-19 Score=214.77 Aligned_cols=191 Identities=21% Similarity=0.382 Sum_probs=132.7
Q ss_pred cceeeeccccccCCCChhHhhhccccceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeec
Q 001988 147 ILDIRLSKNKLSGKLPENICNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLI 226 (985)
Q Consensus 147 L~~L~ls~n~l~g~lp~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 226 (985)
+..++++.+.+.+.++. ..+++|+.|++++|.+. .+| .++.+++|++|+|++|+|++..| ++++++|+.|+|+
T Consensus 23 l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHhccCCCcccccch---hcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 34444555555543332 45777888888888776 344 47778888888888888876544 7778888888888
Q ss_pred cccccCCchhhhcCCCCCCEEEecCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCc
Q 001988 227 NNKLHGEIPQEIGYLQNLDVLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGT 306 (985)
Q Consensus 227 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~ 306 (985)
+|++++ +| .+..+++|++|+|++|++++. ..+..+++|+.|+|++|++++ + ..+..+++|+.|+|++|++++.
T Consensus 96 ~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 96 ENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp SSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCC-C--GGGGSCTTCSEEECCSSCCCCC
T ss_pred CCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCC-c--hhhcccCCCCEEECcCCcCCCc
Confidence 888774 33 677778888888888887753 347777778888888887774 3 2334677777777777777766
Q ss_pred CCccccCCCCccEEEccCcccccccCCcccCCCCCceEeccCCcccCCC
Q 001988 307 IPSSITNASKLILLEMGSNSFSGFIPSAIGNLRNLKLFDIFFNNLTSST 355 (985)
Q Consensus 307 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 355 (985)
.| +..+++|+.|+|++|++++. ..+..+++|+.|+|++|++...+
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred hh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 55 77777777777777777754 34677777777777777776544
No 363
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=2.1e-19 Score=202.00 Aligned_cols=177 Identities=24% Similarity=0.236 Sum_probs=122.4
Q ss_pred cceeccccccccccCCcCCCCCCccEEEccCCCCCCCCCcccc-ccccccceecccccccCCchhhhhhccCCCeEEccC
Q 001988 396 ERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFG-GLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNG 474 (985)
Q Consensus 396 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 474 (985)
+.+++++++++. +|..+. +.++.|+|++|+|++..+..|. ++++|+.|+|++|+|++..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 456777777763 454433 3467777777777766666666 777777777777777766666677777777777777
Q ss_pred CccccccCCCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCcccCCccccc---cCCCcccEEEccCCccCc
Q 001988 475 NKISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAI---GNLKAVVGIDLSRNNLSG 551 (985)
Q Consensus 475 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~ 551 (985)
|+|++..+..|.++++|++|+|++|+|+++.|..|.++++|+.|++++|+|+++.+..| ..+++|+.|+|++|+|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 77776666667777777777777777777777777777777777777777776666555 457777777777777776
Q ss_pred cCchhhccccc--ceeeeeecceecc
Q 001988 552 NIPTTLEGLKS--LQNISLAYNRLEG 575 (985)
Q Consensus 552 ~~p~~~~~l~~--L~~L~Ls~N~l~~ 575 (985)
..+..|..++. |+.|+|++|.+.-
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred cCHHHhhhccHhhcceEEecCCCccC
Confidence 65566666665 3667777777763
No 364
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=2.1e-19 Score=186.63 Aligned_cols=155 Identities=23% Similarity=0.293 Sum_probs=109.0
Q ss_pred ceecccccccCCchhhhhhccCCCeEEccCCccccccC-CCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCC
Q 001988 445 GLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSIS-SCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSN 523 (985)
Q Consensus 445 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N 523 (985)
.+++++|.++ .+|..+ ...+++|+|++|+|++..+ ..|..+++|++|+|++|+|+++.+..|.++++|++|++++|
T Consensus 15 ~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4555555554 233322 2335566666666665533 34666777777777777777666667777777777777777
Q ss_pred cccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCC
Q 001988 524 LLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIP 602 (985)
Q Consensus 524 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 602 (985)
+++++.+..|..+++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|++|.+++..+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 7777777777777788888888888887777788888888888888888887778888888888888888888876433
No 365
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=2.6e-19 Score=185.98 Aligned_cols=155 Identities=23% Similarity=0.324 Sum_probs=110.6
Q ss_pred CeEEccCCccccccCCCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCC
Q 001988 468 NELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRN 547 (985)
Q Consensus 468 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 547 (985)
+.+++++|.++. +|..+. ++|+.|++++|+|+++.+..|.++++|++|++++|+|+++.+..|.++++|+.|+|++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 567777777763 444443 56777777777777766667777777777777777777777777777777777777777
Q ss_pred ccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCccccccccccccccccccccCCC
Q 001988 548 NLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKLSYLKELNLSFNKLKGEI 625 (985)
Q Consensus 548 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~ 625 (985)
+|++..+..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|++|+|++|++.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence 777655556677777777777777777766777777777777777777777666666777777777777777776544
No 366
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=1.8e-19 Score=214.52 Aligned_cols=200 Identities=22% Similarity=0.266 Sum_probs=125.7
Q ss_pred ccceeccccccccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccC
Q 001988 395 LERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNG 474 (985)
Q Consensus 395 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 474 (985)
+..+.+..+.+....+ +..+++|+.|++++|.+... + .|..+++|+.|+|++|+|++..| +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 3344455555443332 34556666666666666543 2 36666666666666666665433 66666777777777
Q ss_pred CccccccCCCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccCc
Q 001988 475 NKISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIP 554 (985)
Q Consensus 475 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 554 (985)
|+|++. ..+..+++|+.|+|++|+++++ ..+..+++|+.|+|++|++.++ ..+..+++|+.|+|++|+|++..|
T Consensus 97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 97 NKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp SCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 776642 2566677777777777776653 2366666777777777777665 356677777777777777776555
Q ss_pred hhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCcccccccc
Q 001988 555 TTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKLSY 610 (985)
Q Consensus 555 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 610 (985)
+..+++|+.|+|++|+|++. | .+..+++|+.|+|++|++++.....+..+..
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~ 222 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKPINHQSNLVV 222 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECCCCCCCSSCEE
T ss_pred --hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCCcccccccEEe
Confidence 77777777777777777753 3 4777777777777777777543333333333
No 367
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=5.1e-19 Score=185.07 Aligned_cols=156 Identities=24% Similarity=0.288 Sum_probs=86.9
Q ss_pred ccceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecC
Q 001988 443 LQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISS 522 (985)
Q Consensus 443 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~ 522 (985)
-+.++.+++.+. .+|..+ .++|++|+|++|+|++..|..|.++++|++|+|++|+|+.
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~------------------- 78 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA------------------- 78 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-------------------
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-------------------
Confidence 344555555555 333322 2445555555555555445555555555555555555544
Q ss_pred CcccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCC
Q 001988 523 NLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIP 602 (985)
Q Consensus 523 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 602 (985)
+.+..|..+++|+.|+|++|+|++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|+|++..+
T Consensus 79 -----i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 79 -----LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp -----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred -----cChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH
Confidence 44444455555555555555555554555555666666666666665 455556666666666666666665555
Q ss_pred ccccccccccccccccccccCCCC
Q 001988 603 VSFEKLSYLKELNLSFNKLKGEIP 626 (985)
Q Consensus 603 ~~~~~l~~L~~L~ls~N~l~~~~p 626 (985)
..|..+++|+.|++++|++.+.++
T Consensus 153 ~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 153 GAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTTTTCTTCCEEECTTSCBCTTBG
T ss_pred HHHhCCCCCCEEEeeCCCccCCcc
Confidence 556666666666666666665554
No 368
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.77 E-value=6.7e-21 Score=225.58 Aligned_cols=190 Identities=22% Similarity=0.206 Sum_probs=131.1
Q ss_pred CCCCccEEEccCCCCCCCCCccccccccccceeccccc-------------ccCCchhhhhhccCCCeEE-ccCCccccc
Q 001988 415 NLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNK-------------LAGSIPDEICLLSRLNELD-LNGNKISGS 480 (985)
Q Consensus 415 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-------------l~~~~p~~~~~l~~L~~L~-L~~N~l~~~ 480 (985)
.+++|+.|+|++|+++ .+|..++.+++|+.|++++|. +.+.+|..++.+++|+.|+ ++.|.+.
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-- 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-- 423 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence 3444555555555554 345555555555555554443 4456666777777777777 5655542
Q ss_pred cCCCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccCchhhccc
Q 001988 481 ISSCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGL 560 (985)
Q Consensus 481 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 560 (985)
+|+.+.+++|.++.+.+. .|+.|++++|+|+++ |. ++.+++|+.|+|++|+|+ .+|..|+.+
T Consensus 424 ---------~L~~l~l~~n~i~~l~~~------~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 485 (567)
T 1dce_A 424 ---------DLRSKFLLENSVLKMEYA------DVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAAL 485 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHHHT------TCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred ---------hhhhhhhhcccccccCcc------CceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcC
Confidence 455566666766654332 367788888888774 33 778888888888888887 667788888
Q ss_pred ccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCC-CccccccccccccccccccccCCCCC
Q 001988 561 KSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSI-PVSFEKLSYLKELNLSFNKLKGEIPR 627 (985)
Q Consensus 561 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~~p~ 627 (985)
++|+.|+|++|+|++ +| .|+++++|+.|+|++|+|++.+ |..|..+++|+.|+|++|++++.+|.
T Consensus 486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 888888888888886 56 7888888888888888888766 78888888888888888888877764
No 369
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=8e-19 Score=187.60 Aligned_cols=172 Identities=22% Similarity=0.295 Sum_probs=121.7
Q ss_pred ccccccceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCceEeeccceeeeecCCCccCccceeEE
Q 001988 439 GLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSF 518 (985)
Q Consensus 439 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 518 (985)
.+.++..+++++|.+++. + .+..+++|+.|++++|+++. ++ .+..+++|++|+|++|+++++.+ |..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 345566666666666633 2 45566666666666666663 33 46666667777777776666544 6666777777
Q ss_pred eecCCcccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCccc
Q 001988 519 DISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKIS 598 (985)
Q Consensus 519 ~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 598 (985)
++++|++++..+. .. ++|+.|+|++|+|++. ..+..+++|+.|+|++|+|++. + .+..+++|+.|+|++|+++
T Consensus 91 ~L~~N~l~~l~~~--~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKNLNGI--PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSCCTTC--CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCCcCcc--cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 7777777664432 22 7788888888888754 3588888888888888888864 3 6888888889999999888
Q ss_pred CCCCccccccccccccccccccccCCC
Q 001988 599 GSIPVSFEKLSYLKELNLSFNKLKGEI 625 (985)
Q Consensus 599 ~~~p~~~~~l~~L~~L~ls~N~l~~~~ 625 (985)
+. ..+..+++|+.|++++|++++..
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCCc
Confidence 66 66888888999999999888663
No 370
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.76 E-value=6.8e-19 Score=187.57 Aligned_cols=139 Identities=19% Similarity=0.242 Sum_probs=108.1
Q ss_pred hcCccCCceeeccCceeEEEEEE-cCCcE--EEEEEeccCCcc------------------------hHHHHHHHHHHHH
Q 001988 725 TDNFAENNIIGIGGFGSVYRARL-EDGVE--IAIKVFHPQCAS------------------------TLKSFEAECEVIK 777 (985)
Q Consensus 725 ~~~~~~~~~ig~G~~g~V~~~~~-~~~~~--vAvK~~~~~~~~------------------------~~~~~~~E~~il~ 777 (985)
..-|...+.||+|+||.||+|.. .+|+. ||||+++..... ....+.+|+++++
T Consensus 46 ~~~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 125 (258)
T 1zth_A 46 GYITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLE 125 (258)
T ss_dssp TSEEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHH
T ss_pred CCchhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHH
Confidence 33467788999999999999997 68999 999997643211 1136789999999
Q ss_pred hcCCCCe--eeEEeeeecCCceEEEEeccCC-C----ChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcC-CCCeEe
Q 001988 778 NIRHRNL--VKIISSCSNDDFKALVLEYMSN-G----SLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGH-STPIIH 849 (985)
Q Consensus 778 ~l~h~ni--v~l~~~~~~~~~~~lv~e~~~~-g----sL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h-~~~ivH 849 (985)
++.|+++ +.++++ +..++||||+.+ | +|.++... .++.....++.|++.|+.|| | +.||+|
T Consensus 126 ~l~~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~----~~~~~~~~i~~qi~~~l~~l---H~~~givH 194 (258)
T 1zth_A 126 RAKEAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE----LKELDVEGIFNDVVENVKRL---YQEAELVH 194 (258)
T ss_dssp HHHHTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG----GGGSCHHHHHHHHHHHHHHH---HHTSCEEC
T ss_pred HHHhCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc----cChHHHHHHHHHHHHHHHHH---HHHCCEEe
Confidence 9988754 344443 356899999942 4 67666443 12345678999999999999 7 899999
Q ss_pred CCCCCCCEEEcCCCcEEEecccCceec
Q 001988 850 CDLKPSNVLLDEDMVAHLSDFGMAKLL 876 (985)
Q Consensus 850 rDlk~~Nill~~~~~~kl~DfGla~~~ 876 (985)
|||||+|||+++ .++|+|||+|...
T Consensus 195 rDlkp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 195 ADLSEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp SSCSTTSEEESS--SEEECCCTTCEET
T ss_pred CCCCHHHEEEcC--cEEEEECcccccC
Confidence 999999999998 9999999999764
No 371
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=1.1e-18 Score=186.58 Aligned_cols=168 Identities=20% Similarity=0.300 Sum_probs=113.7
Q ss_pred cccceeccccccccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEcc
Q 001988 394 SLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLN 473 (985)
Q Consensus 394 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 473 (985)
.+..+++++|.+++.. .+..+++|++|++++|+++. ++ .+..+++|+.|+|++|+|++..+ +..+++|+.|+|+
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 4566667777666443 46677777788888777774 33 57777777778887777775443 7777777777777
Q ss_pred CCccccccCCCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccC
Q 001988 474 GNKISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNI 553 (985)
Q Consensus 474 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 553 (985)
+|++++. |. +.. ++|++|++++|+++++ ..+..+++|+.|++++|++++.. .+..+++|+.|+|++|+|++.
T Consensus 94 ~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 94 RNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch-
Confidence 7777753 32 222 7777777777777764 24666777777777777776652 466677777777777777655
Q ss_pred chhhcccccceeeeeecceeccc
Q 001988 554 PTTLEGLKSLQNISLAYNRLEGP 576 (985)
Q Consensus 554 p~~~~~l~~L~~L~Ls~N~l~~~ 576 (985)
..+..+++|+.|++++|.+++.
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEECC
T ss_pred -HHhccCCCCCEEeCCCCcccCC
Confidence 5566677777777777777654
No 372
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=1e-19 Score=222.39 Aligned_cols=197 Identities=20% Similarity=0.224 Sum_probs=116.3
Q ss_pred cccceecccCCcCCCCCCcccccCCCCcEEEccCcccCCCCccccccCCccceeeeccccccCCCChhHhhhccccceec
Q 001988 97 SSLKSLDLSHNKLSSNIPSSIFTMSTLKVLYLMDNQLSGSLSSFTFNTSSILDIRLSKNKLSGKLPENICNHLRYLKHLF 176 (985)
Q Consensus 97 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~g~lp~~~~~~l~~L~~L~ 176 (985)
+.++.|+|.+|.+.. +|..+ |+.++|++|.+. .++++.|.+. +|+..+..+++|+.|+
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~-----l~~l~Ls~~~i~--------------~~~~~~n~~~--~~~~~~~~l~~L~~L~ 230 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQAL-----LQHKKLSQYSID--------------EDDDIENRMV--MPKDSKYDDQLWHALD 230 (727)
T ss_dssp -----------------------------------------------------------------------CCCCCCEEE
T ss_pred CccceEEeeCCCCCc-chhhH-----hhcCccCccccc--------------Ccccccccee--cChhhhccCCCCcEEE
Confidence 567888999998875 44433 666777777655 3456666665 5555667888999999
Q ss_pred ccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEEEecCCcCcc
Q 001988 177 LRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGFNNLTG 256 (985)
Q Consensus 177 L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 256 (985)
|++|.+. .+|..+.++++|++|+|++|.|+ .+|..|+++++|++|+|++|+|+ .+|..|+.|++|++|+|++|.|+
T Consensus 231 Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~- 306 (727)
T 4b8c_D 231 LSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT- 306 (727)
T ss_dssp CTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-
T ss_pred CCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-
Confidence 9999988 78888888999999999999998 78888999999999999999998 77888999999999999999987
Q ss_pred cCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccEEEccCc
Q 001988 257 VVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMGSN 325 (985)
Q Consensus 257 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 325 (985)
.+|..|+++++|++|+|++|.|++.+|..+......+..|+|++|.+++.+|.. |..|+++.|
T Consensus 307 ~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 307 TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence 678888899999999999999988777765432223345778888888877764 345556665
No 373
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=3.7e-18 Score=174.13 Aligned_cols=130 Identities=15% Similarity=0.172 Sum_probs=73.8
Q ss_pred hccccceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEE
Q 001988 168 HLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVL 247 (985)
Q Consensus 168 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 247 (985)
.+++|++|++++|.++ .++.+..+++|++|++++|++++..|..++.+++|++|++++|++++..|..++.+++|++|
T Consensus 64 ~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 64 YAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp GCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE
T ss_pred cCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE
Confidence 3444555555555332 22345556666666666666665555566666666666666666665556666666666666
Q ss_pred EecCCc-CcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCC
Q 001988 248 QLGFNN-LTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFS 304 (985)
Q Consensus 248 ~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~ 304 (985)
++++|. ++ .+| .+..+++|++|++++|++++ ++ ....+++|+.|++++|+|.
T Consensus 142 ~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 142 DLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT--TGGGCSSCCEEEECBC---
T ss_pred EccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH--HhccCCCCCEEEeeCcccC
Confidence 666665 43 333 45666666666666666653 33 2345666777777777665
No 374
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=2.9e-18 Score=190.12 Aligned_cols=221 Identities=13% Similarity=0.062 Sum_probs=113.4
Q ss_pred CCCCcEEEecCccCCCcCCccccCCCCccEEEccCcccccccCCcccCCCCCceEeccCCcc----cCCCCccccccccc
Q 001988 290 LPNLEFLNLGINSFSGTIPSSITNASKLILLEMGSNSFSGFIPSAIGNLRNLKLFDIFFNNL----TSSTPELGFLSSLA 365 (985)
Q Consensus 290 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l----~~~~~~~~~~~~l~ 365 (985)
+++|+.|+|.+ +++...+..|.++++|+.|++++|.+..+.+.+|.+..++..+....+.. ..+.. .+|.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~-----~~f~ 173 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEH-----FAFI 173 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTT-----SCEE
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccc-----cccc
Confidence 56666666665 55544455566666666666666666656666666666555555444221 11111 1244
Q ss_pred ccCccc-EEEecCCCCCccCCCCccchhhcccceeccccccccccCCcCCCCCCccEEEccCCCCCCCCCccc-cccccc
Q 001988 366 NCKKLR-YLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTF-GGLQKL 443 (985)
Q Consensus 366 ~l~~L~-~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L 443 (985)
++..|+ .+.+.... .++..+. ..-....+++.+.+.++-.. .....+ ..+++|
T Consensus 174 ~~~~L~~~i~~~~~~---~l~~~~~---------------------~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L 228 (329)
T 3sb4_A 174 EGEPLETTIQVGAMG---KLEDEIM---------------------KAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNL 228 (329)
T ss_dssp ESCCCEEEEEECTTC---CHHHHHH---------------------HTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTC
T ss_pred cccccceeEEecCCC---cHHHHHh---------------------hcccCccccceEEEeeeecH-HHHHHHHHhcCCC
Confidence 555555 34433221 1111000 00011233334444333111 111111 124555
Q ss_pred cceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCc-eEeeccceeeeecCCCccCccceeEEeecC
Q 001988 444 QGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQ-YLNLGSNRFTFVIPSTFWNLKDILSFDISS 522 (985)
Q Consensus 444 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~ 522 (985)
+.|+|++|+++.+.+..|..+++|+.|+|.+| ++.+.+.+|.++++|+ .+++.+ +++.+.+.+|.++++|+.++++.
T Consensus 229 ~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 229 VSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATG 306 (329)
T ss_dssp CEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECS
T ss_pred eEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCC
Confidence 55666655555444455555666666666655 5545555666666666 666665 55556666666666666666666
Q ss_pred CcccCCccccccCCCcccEEE
Q 001988 523 NLLDGPISLAIGNLKAVVGID 543 (985)
Q Consensus 523 N~l~~~~~~~~~~l~~L~~L~ 543 (985)
|.++.+.+.+|.++++|+.++
T Consensus 307 n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 307 DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp SCCCEECTTTTCTTCCCCEEE
T ss_pred CccCccchhhhcCCcchhhhc
Confidence 666666666666666666664
No 375
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=9.9e-18 Score=170.92 Aligned_cols=131 Identities=15% Similarity=0.256 Sum_probs=74.4
Q ss_pred hhccccceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCE
Q 001988 167 NHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDV 246 (985)
Q Consensus 167 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 246 (985)
+.+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..|..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34556666666666665 445 4666666666666666554 2235556666666666666666555556666666666
Q ss_pred EEecCCcCcccCcccccCCCCCCEEEccCCc-CcccCChhhhhcCCCCcEEEecCccCC
Q 001988 247 LQLGFNNLTGVVPATIFNMSTLKEIFLYNNS-LSGSLPSRIDLALPNLEFLNLGINSFS 304 (985)
Q Consensus 247 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~~~~~l~~L~~L~Ls~N~l~ 304 (985)
|++++|++++..|..+..+++|++|++++|. ++ .+|. +..+++|++|++++|+++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~~--l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIMP--LKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCGG--GGGCSSCCEEECTTBCCC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccHh--hcCCCCCCEEECCCCCCc
Confidence 6666666665555556666666666666665 33 3331 234444455544444444
No 376
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=2.5e-18 Score=174.51 Aligned_cols=132 Identities=21% Similarity=0.310 Sum_probs=89.4
Q ss_pred CeEEccCCccccccCCCCcCcCcCceEeeccceeeeecCC-CccCccceeEEeecCCcccCCccccccCCCcccEEEccC
Q 001988 468 NELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFVIPS-TFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSR 546 (985)
Q Consensus 468 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 546 (985)
+.+++++|+++ .+|..+.. +|++|++++|+|+++.+. .|..+++|++|++++|+|+++.|..|..+++|+.|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67888888886 45554433 777888888887766554 466777777777777777766666666666677777777
Q ss_pred CccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCC
Q 001988 547 NNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIP 602 (985)
Q Consensus 547 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 602 (985)
|+|++..|..|.++++|++|+|++|+|++.+|..|..+++|++|+|++|++++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 76666666666666666666666666666666666666666666666666665433
No 377
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=5.8e-18 Score=187.63 Aligned_cols=15 Identities=20% Similarity=0.521 Sum_probs=8.4
Q ss_pred CCCCcEEEecCccCC
Q 001988 290 LPNLEFLNLGINSFS 304 (985)
Q Consensus 290 l~~L~~L~Ls~N~l~ 304 (985)
+++|+.|||++|++.
T Consensus 48 l~~L~~LdLs~n~i~ 62 (329)
T 3sb4_A 48 FPSLKVLDISNAEIK 62 (329)
T ss_dssp CTTCCEEEEEEEEEC
T ss_pred hccCeEEecCcceeE
Confidence 455555555555554
No 378
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=2.9e-17 Score=166.54 Aligned_cols=132 Identities=26% Similarity=0.313 Sum_probs=93.5
Q ss_pred cceecccccccCCchhhhhhccCCCeEEccCCccccccCC-CCcCcCcCceEeeccceeeeecCCCccCccceeEEeecC
Q 001988 444 QGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISS-CLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISS 522 (985)
Q Consensus 444 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~ 522 (985)
+.+++++|.++ .+|..+. .+|++|+|++|+|++..+. .|..+++|++|+|++|+|+++.|..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56777777775 4555432 3677777777777765553 467777777777777777777777777777777777777
Q ss_pred CcccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchh
Q 001988 523 NLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIP 578 (985)
Q Consensus 523 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 578 (985)
|+|++..+..|..+++|+.|+|++|+|++..|..|..+++|++|+|++|.+++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 77777777777777777777777777777777777777777777777777776443
No 379
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=2.3e-16 Score=156.23 Aligned_cols=134 Identities=23% Similarity=0.282 Sum_probs=90.7
Q ss_pred cCCCeEEccCCccc-cccCCCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEE
Q 001988 465 SRLNELDLNGNKIS-GSISSCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGID 543 (985)
Q Consensus 465 ~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~ 543 (985)
++|+.|++++|+++ +.+|..+..+++|++|++++|.+++ . ..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~------------------------~--~~~~~l~~L~~L~ 77 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS------------------------V--SNLPKLPKLKKLE 77 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC------------------------C--SSCCCCSSCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC------------------------h--hhhccCCCCCEEE
Confidence 45666666666665 4455555555555555555555544 3 3455666677777
Q ss_pred ccCCccCccCchhhcccccceeeeeecceeccch-hhhhhcccccCeEecCCCcccCCCC---ccccccccccccccccc
Q 001988 544 LSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPI-PESFGNMTSLESLDLSNNKISGSIP---VSFEKLSYLKELNLSFN 619 (985)
Q Consensus 544 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~ls~N 619 (985)
|++|++++.+|..+..+++|++|+|++|++++.. +..+..+++|+.|+|++|++++..+ ..+..+++|++|++++|
T Consensus 78 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 78 LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 7777777666777777778888888888887642 2677788888888888888876554 46778888888888888
Q ss_pred cccCC
Q 001988 620 KLKGE 624 (985)
Q Consensus 620 ~l~~~ 624 (985)
.++..
T Consensus 158 ~~~~~ 162 (168)
T 2ell_A 158 EDQEA 162 (168)
T ss_dssp TSCBC
T ss_pred Chhhc
Confidence 77643
No 380
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=4e-16 Score=154.57 Aligned_cols=132 Identities=23% Similarity=0.264 Sum_probs=90.3
Q ss_pred cccceecccCcccc-ccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEEE
Q 001988 170 RYLKHLFLRENMFY-GKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQ 248 (985)
Q Consensus 170 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 248 (985)
++|++|++++|.++ +.+|..+..+++|++|+|++|.+++. ..++.+++|++|++++|++++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 56777777777776 66777777777777777777777754 6677777777777777777766677777777777777
Q ss_pred ecCCcCcccC-cccccCCCCCCEEEccCCcCcccCCh---hhhhcCCCCcEEEecCccCC
Q 001988 249 LGFNNLTGVV-PATIFNMSTLKEIFLYNNSLSGSLPS---RIDLALPNLEFLNLGINSFS 304 (985)
Q Consensus 249 Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p~---~~~~~l~~L~~L~Ls~N~l~ 304 (985)
+++|++++.. +..+..+++|++|++++|.+++ +|. ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChh
Confidence 7777777532 2566677777777777777763 333 34445666666666666655
No 381
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=3.4e-16 Score=151.65 Aligned_cols=128 Identities=23% Similarity=0.306 Sum_probs=88.4
Q ss_pred cCCCeEEccCCccc-cccCCCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEE
Q 001988 465 SRLNELDLNGNKIS-GSISSCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGID 543 (985)
Q Consensus 465 ~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~ 543 (985)
++|+.|++++|.++ +.+|..+..+++|++|++++|.++ +. ..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~------------------------~~--~~~~~l~~L~~L~ 70 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT------------------------SI--ANLPKLNKLKKLE 70 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC------------------------CC--TTCCCCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC------------------------Cc--hhhhcCCCCCEEE
Confidence 44555555555555 444545555555555555555544 43 3466677777777
Q ss_pred ccCCccCccCchhhcccccceeeeeecceeccc-hhhhhhcccccCeEecCCCcccCCCC---cccccccccccccccc
Q 001988 544 LSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGP-IPESFGNMTSLESLDLSNNKISGSIP---VSFEKLSYLKELNLSF 618 (985)
Q Consensus 544 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~ls~ 618 (985)
+++|+|++.+|..+..+++|++|++++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|+.||+++
T Consensus 71 Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 777777766777777788888888888888863 34778888888888888888886655 4678888888888764
No 382
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.63 E-value=6.3e-16 Score=170.35 Aligned_cols=143 Identities=15% Similarity=0.194 Sum_probs=104.5
Q ss_pred HHHHHhcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcc--------------hH--------HHHHHHHHHHH
Q 001988 720 ELLRATDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCAS--------------TL--------KSFEAECEVIK 777 (985)
Q Consensus 720 ~~~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~--------------~~--------~~~~~E~~il~ 777 (985)
.+.....-|++.+.||+|+||.||+|...+|++||||+++..... .. ....+|...+.
T Consensus 89 ~L~~rg~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~ 168 (397)
T 4gyi_A 89 THAARKDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMK 168 (397)
T ss_dssp HHHHTTSCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 333444458899999999999999999999999999997643100 00 11345677777
Q ss_pred hcCCCCee--eEEeeeecCCceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCC
Q 001988 778 NIRHRNLV--KIISSCSNDDFKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPS 855 (985)
Q Consensus 778 ~l~h~niv--~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~ 855 (985)
++.+.++. ..+++ . ..+|||||++|++|.+..... ....++.|++.++.|| |+.|||||||||.
T Consensus 169 rL~~~gv~vp~p~~~--~--~~~LVME~i~G~~L~~l~~~~-------~~~~l~~qll~~l~~l---H~~gIVHrDLKp~ 234 (397)
T 4gyi_A 169 ALYEEGFPVPEPIAQ--S--RHTIVMSLVDALPMRQVSSVP-------DPASLYADLIALILRL---AKHGLIHGDFNEF 234 (397)
T ss_dssp HHHHTTCSCCCEEEE--E--TTEEEEECCSCEEGGGCCCCS-------CHHHHHHHHHHHHHHH---HHTTEECSCCSTT
T ss_pred HHHhcCCCCCeeeec--c--CceEEEEecCCccHhhhcccH-------HHHHHHHHHHHHHHHH---HHCCCcCCCCCHH
Confidence 77544432 22222 1 237999999998887654321 2346789999999999 7889999999999
Q ss_pred CEEEcCCC----------cEEEecccCceec
Q 001988 856 NVLLDEDM----------VAHLSDFGMAKLL 876 (985)
Q Consensus 856 Nill~~~~----------~~kl~DfGla~~~ 876 (985)
|||+++++ .+.|+||+-+...
T Consensus 235 NILl~~dgd~~d~~~~~~~~~iID~~Q~V~~ 265 (397)
T 4gyi_A 235 NILIREEKDAEDPSSITLTPIIIXFPQMVSM 265 (397)
T ss_dssp SEEEEEEECSSCTTSEEEEEEECCCTTCEET
T ss_pred HEEEeCCCCcccccccccceEEEEeCCcccC
Confidence 99998877 4899999987664
No 383
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=6.7e-16 Score=149.57 Aligned_cols=129 Identities=20% Similarity=0.250 Sum_probs=105.8
Q ss_pred ccccceecccCcccc-ccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEE
Q 001988 169 LRYLKHLFLRENMFY-GKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVL 247 (985)
Q Consensus 169 l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 247 (985)
.++|++|++++|.++ +.+|..+..+++|++|+|++|.+++. ..++++++|++|++++|++++.+|..++.+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467888899999888 78888888999999999999999865 778888999999999999987788888888999999
Q ss_pred EecCCcCccc-CcccccCCCCCCEEEccCCcCcccCC--hhhhhcCCCCcEEEec
Q 001988 248 QLGFNNLTGV-VPATIFNMSTLKEIFLYNNSLSGSLP--SRIDLALPNLEFLNLG 299 (985)
Q Consensus 248 ~Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p--~~~~~~l~~L~~L~Ls 299 (985)
++++|++++. .+..+..+++|++|++++|.+++..+ ...+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999998863 45778888888888888888884433 1455677788887765
No 384
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=2.1e-16 Score=160.16 Aligned_cols=110 Identities=28% Similarity=0.366 Sum_probs=65.1
Q ss_pred eeEEeecCCcccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCC
Q 001988 515 ILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSN 594 (985)
Q Consensus 515 L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 594 (985)
|++|++++|+|+. +|..|.++++|+.|+|++|+|++..+..|.++++|++|+|++|+|++..|..|.++++|+.|+|++
T Consensus 33 l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 33 VTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp CCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence 3444444444432 223455555555666666666555555566666666666666666665566666666666666666
Q ss_pred CcccCCCCccccccccccccccccccccCCC
Q 001988 595 NKISGSIPVSFEKLSYLKELNLSFNKLKGEI 625 (985)
Q Consensus 595 N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~ 625 (985)
|+|++..+..|..+++|+.|++++|++.+..
T Consensus 112 N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 112 NDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred CCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 6666555555666666666666666666544
No 385
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=3.3e-15 Score=169.09 Aligned_cols=220 Identities=9% Similarity=0.121 Sum_probs=154.0
Q ss_pred cccceeccccccccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEcc
Q 001988 394 SLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLN 473 (985)
Q Consensus 394 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 473 (985)
+|+.+.+.+ .++.+.+.+|.++++|+.++|++|+++.+...+|. ..+|+.+.|..+ ++.+...+|..+++|+.+++.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 355555554 45555667777777788888877777766666666 467777777744 555556677777777777777
Q ss_pred CCccccccCCCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCccc-----CCccccccCCCcccEEEccCCc
Q 001988 474 GNKISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLD-----GPISLAIGNLKAVVGIDLSRNN 548 (985)
Q Consensus 474 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~ 548 (985)
+| ++.+...+|.+ .+|+.+.+ .|.++.+.+.+|.++++|+.+++.+|.+. .+.+.+|.++++|+.++|. |.
T Consensus 235 ~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~ 310 (401)
T 4fdw_A 235 EN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ES 310 (401)
T ss_dssp TT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TT
T ss_pred CC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cc
Confidence 65 45455667766 67888877 44566677777888888888887777665 4566677778888888887 44
Q ss_pred cCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCccccccc-ccccccccccccc
Q 001988 549 LSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKLS-YLKELNLSFNKLK 622 (985)
Q Consensus 549 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~ls~N~l~ 622 (985)
++.+...+|.++++|+.++|.+| ++...+.+|.++ +|+.+++++|.+....+..|..++ +++.|++..|.+.
T Consensus 311 i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 311 IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 76666777888888888888555 665566777777 788888888877766666677764 5667776666543
No 386
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=2.2e-15 Score=152.65 Aligned_cols=125 Identities=26% Similarity=0.368 Sum_probs=62.1
Q ss_pred eecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEEEecCCc
Q 001988 174 HLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGFNN 253 (985)
Q Consensus 174 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 253 (985)
++++++|.++ .+|..+. ++|++|+|++|+|+ .+|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4444444444 4444332 34555555555555 444555555555555555555554444455555555555555555
Q ss_pred CcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccC
Q 001988 254 LTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSF 303 (985)
Q Consensus 254 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l 303 (985)
|++..|..|.++++|++|+|++|+++ .+|...+..+++|+.|+|++|.+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCe
Confidence 55544445555555555555555554 33333333444444444444444
No 387
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=8.1e-16 Score=153.78 Aligned_cols=133 Identities=21% Similarity=0.302 Sum_probs=74.4
Q ss_pred CCeEEccCCccccccCCCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccC
Q 001988 467 LNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSR 546 (985)
Q Consensus 467 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 546 (985)
.+.+++++|+++. +|..+. ++|++|++++|+++++.+.. +..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~~--~~l~~L~l~~n~l~~~~~~~------------------------~~~l~~L~~L~l~~ 61 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGIP--SSATRLELESNKLQSLPHGV------------------------FDKLTQLTKLSLSQ 61 (177)
T ss_dssp TTEEECCSSCCSS-CCTTCC--TTCSEEECCSSCCCCCCTTT------------------------TTTCTTCSEEECCS
T ss_pred CCEEEecCCCCcc-CCCCCC--CCCcEEEeCCCcccEeCHHH------------------------hcCcccccEEECCC
Confidence 4556666666653 232221 45555555555555544444 44455555555555
Q ss_pred CccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCccccccccccccccccccccCCCC
Q 001988 547 NNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKLSYLKELNLSFNKLKGEIP 626 (985)
Q Consensus 547 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 626 (985)
|+|++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|++..+..+..+++|++|++++|++++.+|
T Consensus 62 n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 62 NQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 55554444445555666666666666665555555666666666666666665444445566666666666666665554
No 388
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=1.1e-14 Score=164.76 Aligned_cols=265 Identities=14% Similarity=0.138 Sum_probs=138.3
Q ss_pred CCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccEEEccCcccccccCCcccCCCCCceEe
Q 001988 266 STLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMGSNSFSGFIPSAIGNLRNLKLFD 345 (985)
Q Consensus 266 ~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 345 (985)
..++.+.+.++ ++ .++...|.. .+|+.+.+..| ++......|.+ .+|+.+.+.. .++.+.+.+|.++++|+.++
T Consensus 113 ~~l~~i~ip~~-i~-~I~~~aF~~-~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPNS-VK-SIPKDAFRN-SQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCTT-CC-EECTTTTTT-CCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECCc-cC-EehHhhccc-CCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 45566666542 33 455555444 25666666544 44333444444 2455555543 34434444444444444444
Q ss_pred ccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhcccceeccccccccccCCcCCCCCCccEEEcc
Q 001988 346 IFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLG 425 (985)
Q Consensus 346 L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 425 (985)
+..|+++.++ ...|. .. +|+.+.+..+ ++.+...+|.++++|+.+++.
T Consensus 187 l~~n~l~~I~-----------------------------~~aF~-~~-~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 187 LSKTKITKLP-----------------------------ASTFV-YA-GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CTTSCCSEEC-----------------------------TTTTT-TC-CCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred cCCCcceEec-----------------------------hhhEe-ec-ccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 4444443332 22222 12 4455555422 444555666666666666666
Q ss_pred CCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCCccc-----cccCCCCcCcCcCceEeeccce
Q 001988 426 GNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKIS-----GSISSCLGNLTSLQYLNLGSNR 500 (985)
Q Consensus 426 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~L~~N~ 500 (985)
+| ++.+...+|.+ .+|+.+++ .|.++.+.+.+|..+++|+.+++.+|.+. .+.+.+|.++++|+.+++. |.
T Consensus 235 ~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~ 310 (401)
T 4fdw_A 235 EN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ES 310 (401)
T ss_dssp TT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TT
T ss_pred CC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cc
Confidence 53 44445555655 55666666 33444344455566666666666655543 3445566666666666666 33
Q ss_pred eeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccCchhhcccc-cceeeeeecceec
Q 001988 501 FTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLK-SLQNISLAYNRLE 574 (985)
Q Consensus 501 l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~ 574 (985)
++.+...+|.++.+|+.+++..| ++.+...+|.++ +|+.+++++|.+....+..|.+++ .++.|++..+.+.
T Consensus 311 i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 311 IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 55555566666666666666433 444555556555 566666666655544445555553 4555555555443
No 389
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.59 E-value=7.3e-17 Score=164.61 Aligned_cols=138 Identities=23% Similarity=0.294 Sum_probs=87.2
Q ss_pred cccccccceecccCCcCCCCCCc------ccccCCCCcEEEccCcccCCCCccccccCCccceeeeccccccCCCChhHh
Q 001988 93 IANLSSLKSLDLSHNKLSSNIPS------SIFTMSTLKVLYLMDNQLSGSLSSFTFNTSSILDIRLSKNKLSGKLPENIC 166 (985)
Q Consensus 93 l~~l~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ls~n~l~g~lp~~~~ 166 (985)
+.....++.++++.+.++|.+|. .+..+++|++|+|++|++++ +| . +
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-------------------------l~-~-~ 66 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-------------------------IS-S-L 66 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-------------------------CC-C-H
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-------------------------cc-c-c
Confidence 55667788888888888877776 66667777777776666653 33 1 2
Q ss_pred hhccccceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCch-hhhcCCCCCC
Q 001988 167 NHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIP-QEIGYLQNLD 245 (985)
Q Consensus 167 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~ 245 (985)
..+++|++|++++|.++ .+|..+..+++|++|+|++|++++ +| .++++++|++|++++|++++..+ ..+..+++|+
T Consensus 67 ~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 67 SGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143 (198)
T ss_dssp HHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCS
T ss_pred ccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCC
Confidence 45566666666666665 455555556666666666666664 44 46666666666666666663222 3566666666
Q ss_pred EEEecCCcCcccCcc
Q 001988 246 VLQLGFNNLTGVVPA 260 (985)
Q Consensus 246 ~L~Ls~N~l~~~~p~ 260 (985)
+|++++|.+++.+|.
T Consensus 144 ~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 144 DLLLAGNPLYNDYKE 158 (198)
T ss_dssp EEEECSCHHHHHHHT
T ss_pred EEEecCCcccccccc
Confidence 666666666655443
No 390
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=5.2e-15 Score=147.84 Aligned_cols=109 Identities=27% Similarity=0.291 Sum_probs=45.9
Q ss_pred CceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEEEecCCcCcccCcccccCCCCCCEEEcc
Q 001988 195 QLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGFNNLTGVVPATIFNMSTLKEIFLY 274 (985)
Q Consensus 195 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 274 (985)
+|++|++++|++++..+..|+++++|++|++++|++++..+..|+.+++|++|++++|++++..+..+.++++|++|+|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44444444444443333334444444444444444443333334444444444444444444333334444444444444
Q ss_pred CCcCcccCChhhhhcCCCCcEEEecCccCC
Q 001988 275 NNSLSGSLPSRIDLALPNLEFLNLGINSFS 304 (985)
Q Consensus 275 ~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~ 304 (985)
+|+++ .+|...+..+++|++|+|++|.+.
T Consensus 109 ~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 109 TNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcce-EeCHHHhcCCcccCEEEecCCCee
Confidence 44443 233332233333444444444333
No 391
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.57 E-value=1.4e-16 Score=162.51 Aligned_cols=155 Identities=21% Similarity=0.275 Sum_probs=100.4
Q ss_pred cccccccceecccccccCCchh------hhhhccCCCeEEccCCccccccCCCCcCcCcCceEeeccceeeeecCCCccC
Q 001988 438 GGLQKLQGLDLAFNKLAGSIPD------EICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFWN 511 (985)
Q Consensus 438 ~~l~~L~~L~Ls~N~l~~~~p~------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 511 (985)
.....++.++++.|.+.+.+|. .+..+++|++|+|++|++++ +| .+.++++|++|++++|+++. +|..+
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~-- 89 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLD-- 89 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHH--
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchh--
Confidence 3445566666666666665554 67777777777777777775 44 66777777777777777763 34333
Q ss_pred ccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchh-hhhhcccccCeE
Q 001988 512 LKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIP-ESFGNMTSLESL 590 (985)
Q Consensus 512 l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L 590 (985)
..+++|+.|+|++|+|++ +| .+..+++|++|++++|++++..+ ..+..+++|++|
T Consensus 90 ----------------------~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 90 ----------------------AVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp ----------------------HHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred ----------------------hcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEE
Confidence 334555555555555554 23 56677777777777777775332 467777777777
Q ss_pred ecCCCcccCCCCcc----------ccccccccccccccccccC
Q 001988 591 DLSNNKISGSIPVS----------FEKLSYLKELNLSFNKLKG 623 (985)
Q Consensus 591 ~Ls~N~l~~~~p~~----------~~~l~~L~~L~ls~N~l~~ 623 (985)
++++|++++.+|.. +..+++|+.|| +|+++.
T Consensus 146 ~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 146 LLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp EECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred EecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 77777777665542 67777777776 666653
No 392
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.55 E-value=6.9e-14 Score=158.87 Aligned_cols=68 Identities=9% Similarity=-0.039 Sum_probs=46.1
Q ss_pred ccCCchhhhcCCCCCCEEEecCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecC
Q 001988 230 LHGEIPQEIGYLQNLDVLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGI 300 (985)
Q Consensus 230 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~ 300 (985)
++..-..+|.++.+|+.+.+..+ ++.....+|.++++|+.+++.++ ++ .++...|...++|+.+.+..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccC
Confidence 44334456888888888888643 66666777888888888888755 44 56666666666776665543
No 393
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=4.7e-15 Score=148.00 Aligned_cols=106 Identities=18% Similarity=0.181 Sum_probs=72.0
Q ss_pred ceeEEeecCCcccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeecceeccchhh--hhhcccccCeEe
Q 001988 514 DILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPE--SFGNMTSLESLD 591 (985)
Q Consensus 514 ~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~ 591 (985)
+|++|++++|.+++. ..+..+++|+.|+|++|+|++..|..|..+++|++|+|++|+|+. +|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEE
Confidence 444444444444443 345666677777777777775555555777788888888888763 554 677888888888
Q ss_pred cCCCcccCCCCc----cccccccccccccccccccC
Q 001988 592 LSNNKISGSIPV----SFEKLSYLKELNLSFNKLKG 623 (985)
Q Consensus 592 Ls~N~l~~~~p~----~~~~l~~L~~L~ls~N~l~~ 623 (985)
|++|+++ .+|. .+..+++|+.||+++|....
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 8888887 4455 37788888888888887653
No 394
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.53 E-value=2.3e-13 Score=154.52 Aligned_cols=310 Identities=12% Similarity=0.057 Sum_probs=135.9
Q ss_pred cccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEEEecCCcCcccCcccccCCCC
Q 001988 188 SSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGFNNLTGVVPATIFNMST 267 (985)
Q Consensus 188 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 267 (985)
.+|.++++|+++.|.. .++..-..+|.++++|+.+++.++ ++..-...|.++.+|+.+.+..+ ++.....+|.+...
T Consensus 65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred HHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 4556666666666653 244333345666666666666543 33233344555555555544433 22233333433322
Q ss_pred CCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCCCccEEEccCcccccccCCcccCCCCCceEecc
Q 001988 268 LKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNASKLILLEMGSNSFSGFIPSAIGNLRNLKLFDIF 347 (985)
Q Consensus 268 L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 347 (985)
++........ .+.. ..|.++.+|+.+.+.++. ..+...+|.++.+|+.+++.
T Consensus 142 ~~~~~~~~~~---~i~~------------------------~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~ 193 (394)
T 4fs7_A 142 KEITIPEGVT---VIGD------------------------EAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLP 193 (394)
T ss_dssp SEEECCTTCC---EECT------------------------TTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCC
T ss_pred cccccCcccc---ccch------------------------hhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcC
Confidence 2211111110 1222 234444444444444332 22334445555555555554
Q ss_pred CCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhcccceeccccccccccCCcCCCCCCccEEEccCC
Q 001988 348 FNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSLERLNIAFCNISGNIPKAIGNLSNLIVLSLGGN 427 (985)
Q Consensus 348 ~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 427 (985)
.| ++.+.. .++.++..|+.+.+..+... +.+...... +|+.+.+..+ ++.....+|..+..|+.+.+..+
T Consensus 194 ~~-~~~I~~-----~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~-~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 194 RN-LKIIRD-----YCFAECILLENMEFPNSLYY--LGDFALSKT-GVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp TT-CCEECT-----TTTTTCTTCCBCCCCTTCCE--ECTTTTTTC-CCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT
T ss_pred CC-ceEeCc-----hhhccccccceeecCCCceE--eehhhcccC-CCceEEECCC-ceecccccccccccceeEEcCCC
Confidence 33 222221 13455555555554443221 111111111 3444444322 22233445566666666666554
Q ss_pred CCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCCccccccCCCCcCcCcCceEeeccceeeeecCC
Q 001988 428 NLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFVIPS 507 (985)
Q Consensus 428 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 507 (985)
... +...+|..+..++.+....+.+. ...|..+.+|+.+.+.++ ++.+...+|.++++|+.+++.++ ++.+...
T Consensus 264 ~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~ 337 (394)
T 4fs7_A 264 KLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKR 337 (394)
T ss_dssp TCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred cce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHH
Confidence 332 44455555555555555444322 123444555555555443 33333445555555555555432 4444444
Q ss_pred CccCccceeEEeecCCcccCCccccccCCCcccEEEcc
Q 001988 508 TFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLS 545 (985)
Q Consensus 508 ~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls 545 (985)
+|.++.+|+.+++..| ++.+...+|.++.+|+.+++.
T Consensus 338 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 338 SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 4444444444444433 333333344444444444443
No 395
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=1.7e-14 Score=144.02 Aligned_cols=132 Identities=17% Similarity=0.177 Sum_probs=63.5
Q ss_pred cccccccceecccccccCCchhhhhhc-cCCCeEEccCCccccccCCCCcCcCcCceEeeccceeeeecCCCccCcccee
Q 001988 438 GGLQKLQGLDLAFNKLAGSIPDEICLL-SRLNELDLNGNKISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDIL 516 (985)
Q Consensus 438 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 516 (985)
..+.+|+.|++++|+++. +|. +..+ ++|++|+|++|+|++. ..+..+++|++|++++|+|+++.+..|..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 334444444444444442 222 2222 2566666666666543 4555666666666666666655444445555555
Q ss_pred EEeecCCcccCCcc-ccccCCCcccEEEccCCccCccCchh----hcccccceeeeeecceec
Q 001988 517 SFDISSNLLDGPIS-LAIGNLKAVVGIDLSRNNLSGNIPTT----LEGLKSLQNISLAYNRLE 574 (985)
Q Consensus 517 ~L~ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~N~l~ 574 (985)
+|++++|+|....+ ..+..+++|+.|++++|.++ .+|.. +..+++|++|++++|.+.
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 55555555543221 13444444555555555544 22322 444444444444444443
No 396
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=6e-14 Score=138.92 Aligned_cols=90 Identities=21% Similarity=0.258 Sum_probs=60.4
Q ss_pred CcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCcccccccccccccc
Q 001988 537 KAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKLSYLKELNL 616 (985)
Q Consensus 537 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 616 (985)
++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 45666666666666666666666666777777777766665666666777777777777776655556667777777777
Q ss_pred ccccccCCCC
Q 001988 617 SFNKLKGEIP 626 (985)
Q Consensus 617 s~N~l~~~~p 626 (985)
++|++++.++
T Consensus 110 ~~N~~~c~c~ 119 (170)
T 3g39_A 110 LNNPWDCACS 119 (170)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCCCCCch
Confidence 7777766554
No 397
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=3.3e-13 Score=133.58 Aligned_cols=105 Identities=25% Similarity=0.261 Sum_probs=72.0
Q ss_pred cceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEEEecC
Q 001988 172 LKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGF 251 (985)
Q Consensus 172 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 251 (985)
.+.+++++|.++ .+|..+. ++|++|+|++|+|++..|..|+++++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456666666666 4665553 6677777777777766666777777777777777777766566667777777777777
Q ss_pred CcCcccCcccccCCCCCCEEEccCCcCc
Q 001988 252 NNLTGVVPATIFNMSTLKEIFLYNNSLS 279 (985)
Q Consensus 252 N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 279 (985)
|+|++..+..|.++++|++|+|++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7777666666666777777777777665
No 398
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=1.7e-13 Score=136.04 Aligned_cols=90 Identities=23% Similarity=0.295 Sum_probs=53.5
Q ss_pred CcccEEEccCCccCccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCcccCCCCcccccccccccccc
Q 001988 537 KAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKISGSIPVSFEKLSYLKELNL 616 (985)
Q Consensus 537 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 616 (985)
++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 45555566666665555555666666666666666666544445566666666666666666544444666666666666
Q ss_pred ccccccCCCC
Q 001988 617 SFNKLKGEIP 626 (985)
Q Consensus 617 s~N~l~~~~p 626 (985)
++|++.+.++
T Consensus 113 ~~N~~~c~~~ 122 (174)
T 2r9u_A 113 YNNPWDCECR 122 (174)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCcccccc
Confidence 6666665443
No 399
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=5.8e-13 Score=132.26 Aligned_cols=104 Identities=24% Similarity=0.327 Sum_probs=69.2
Q ss_pred ceecccCccccccCCcccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEEEecCC
Q 001988 173 KHLFLRENMFYGKIPSSLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGFN 252 (985)
Q Consensus 173 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 252 (985)
+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|+++++|++|+|++|+|++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45666666664 5666554 66777777777777666666777777777777777777555555667777777777777
Q ss_pred cCcccCcccccCCCCCCEEEccCCcCc
Q 001988 253 NLTGVVPATIFNMSTLKEIFLYNNSLS 279 (985)
Q Consensus 253 ~l~~~~p~~l~~l~~L~~L~L~~N~l~ 279 (985)
+|++..+..|..+++|++|+|++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 777555555666666666666666665
No 400
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.35 E-value=2.5e-11 Score=137.65 Aligned_cols=110 Identities=14% Similarity=0.119 Sum_probs=62.7
Q ss_pred CcccCCCC-CceEEEcccccCCCccccccccccccceEeecccc---ccCCchhhhcCCCCCCEEEecCCcCcccCcccc
Q 001988 187 PSSLSKCK-QLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNK---LHGEIPQEIGYLQNLDVLQLGFNNLTGVVPATI 262 (985)
Q Consensus 187 p~~l~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~---l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 262 (985)
..+|.+++ .|+.+.+..+ ++..-..+|.++++|+.+.+.+|. ++..-...|..+.+|+.+.+..+ ++.....+|
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 34566663 4777777643 554445567777777777777654 44333455666666666655443 343445556
Q ss_pred cCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecC
Q 001988 263 FNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGI 300 (985)
Q Consensus 263 ~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~ 300 (985)
.++.+|+.+.+..+- . .++...+....+|+.+.+..
T Consensus 134 ~~c~~L~~i~lp~~~-~-~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 134 HHCEELDTVTIPEGV-T-SVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp TTCTTCCEEECCTTC-C-EECTTTTTTCTTCCEEECCT
T ss_pred hhhccccccccccee-e-eecccceecccccccccccc
Confidence 666666666665332 2 34444444555555555543
No 401
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=4.6e-14 Score=158.07 Aligned_cols=165 Identities=21% Similarity=0.253 Sum_probs=84.6
Q ss_pred CCCccEEEccCCCCCCCCCcccccc-----ccccceecccccccCCchhhh-hhccCCCeEEccCCccccccCCCC----
Q 001988 416 LSNLIVLSLGGNNLSGSIPVTFGGL-----QKLQGLDLAFNKLAGSIPDEI-CLLSRLNELDLNGNKISGSISSCL---- 485 (985)
Q Consensus 416 l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~~~~~---- 485 (985)
++.|++|+|++|.|+......+... ++|+.|+|++|.+.......+ ..+++|+.|+|++|+|++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3567777787777765433333322 567777777777653322222 234566666666666654322222
Q ss_pred -cCcCcCceEeeccceeeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCcc----Cchhhccc
Q 001988 486 -GNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGN----IPTTLEGL 560 (985)
Q Consensus 486 -~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l 560 (985)
...++|++|+|++|.|+..... .++..+...++|+.|+|++|.|++. ++..+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~--------------------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~ 210 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVA--------------------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN 210 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHH--------------------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC
T ss_pred HhcCCccceeeCCCCCCChHHHH--------------------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC
Confidence 1234455555555544321111 1111223444555555555555432 23444555
Q ss_pred ccceeeeeecceeccc----hhhhhhcccccCeEecCCCcccCC
Q 001988 561 KSLQNISLAYNRLEGP----IPESFGNMTSLESLDLSNNKISGS 600 (985)
Q Consensus 561 ~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~ 600 (985)
++|++|+|++|.|+.. ++..+...++|++|||++|.|++.
T Consensus 211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 5666666666666542 333444556677777777766543
No 402
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=9.5e-14 Score=155.51 Aligned_cols=92 Identities=20% Similarity=0.197 Sum_probs=48.5
Q ss_pred cccceEeeccccccC----CchhhhcCCCCCCEEEecCCcCccc----CcccccCCCCCCEEEccCCcCcccCChhhh--
Q 001988 218 TVLQRISLINNKLHG----EIPQEIGYLQNLDVLQLGFNNLTGV----VPATIFNMSTLKEIFLYNNSLSGSLPSRID-- 287 (985)
Q Consensus 218 ~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-- 287 (985)
++|++|+|++|.|+. .++..+..+++|++|+|++|.|+.. ++..+...++|++|+|++|.|++.....+.
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 345555555555442 2333445556666666666666532 244455556666666666666532222211
Q ss_pred -hcCCCCcEEEecCccCCCcCCc
Q 001988 288 -LALPNLEFLNLGINSFSGTIPS 309 (985)
Q Consensus 288 -~~l~~L~~L~Ls~N~l~~~~p~ 309 (985)
...++|++|+|++|.|++....
T Consensus 235 L~~~~~L~~L~Ls~N~i~~~g~~ 257 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSSEGRQ 257 (372)
T ss_dssp HHHCSSCCEEECTTSSCCHHHHH
T ss_pred HHhCCCCCEEeccCCCCCHHHHH
Confidence 2346677777777776654333
No 403
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.29 E-value=1.5e-10 Score=131.18 Aligned_cols=335 Identities=13% Similarity=0.144 Sum_probs=175.1
Q ss_pred CCChhHhhhc-cccceecccCccccccCCcccCCCCCceEEEccccc---CCCccccccccccccceEeeccccccCCch
Q 001988 160 KLPENICNHL-RYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGYNN---LSGAIPKEIGNLTVLQRISLINNKLHGEIP 235 (985)
Q Consensus 160 ~lp~~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~N~---l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 235 (985)
.|++.-|.+. ..|+.+.+..+ ++..-..+|.++++|+.+.++.|. ++..-..+|.++.+|+.+.+.++ ++....
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred EcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh
Confidence 4555555555 35888888754 664556789999999999998874 55444567888899998888765 443445
Q ss_pred hhhcCCCCCCEEEecCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCCCCcEEEecCccCCCcCCccccCCC
Q 001988 236 QEIGYLQNLDVLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALPNLEFLNLGINSFSGTIPSSITNAS 315 (985)
Q Consensus 236 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 315 (985)
..|..+.+|+.+.+..+ ++......|..+..|+.+.+.++ ++ .+....|. ..+|+.+.+..+-.. .....+.++.
T Consensus 131 ~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~ 205 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECF 205 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCT
T ss_pred hhhhhhcccccccccce-eeeecccceecccccccccccce-ee-Eecccccc-ccceeEEEECCcccc-cccchhhhcc
Confidence 67888999999999755 44466778888999999998765 33 44544443 245666655433211 2223333333
Q ss_pred CccEEEccCcccccccCCcccCCCCCceEeccCCcccCCCCcccccccccccCcccEEEecCCCCCccCCCCccchhhcc
Q 001988 316 KLILLEMGSNSFSGFIPSAIGNLRNLKLFDIFFNNLTSSTPELGFLSSLANCKKLRYLGLGGNPLDGFLPSSIGNLSLSL 395 (985)
Q Consensus 316 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L 395 (985)
++...... .+......... +........-.... |.. ..+
T Consensus 206 ~l~~~~~~------------------------~~~~~~~~~~~-----~~~~~~~~~~~~~~-------~~~-----~~~ 244 (394)
T 4gt6_A 206 ALSTITSD------------------------SESYPAIDNVL-----YEKSANGDYALIRY-------PSQ-----RED 244 (394)
T ss_dssp TCCEEEEC------------------------CSSSCBSSSCE-----EEECTTSCEEEEEC-------CTT-----CCC
T ss_pred ccceeccc------------------------cccccccccee-----eccccccccccccc-------ccc-----ccc
Confidence 33333332 22221111000 00000000000000 000 001
Q ss_pred cceeccccccccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCC
Q 001988 396 ERLNIAFCNISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGN 475 (985)
Q Consensus 396 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 475 (985)
..+.+. +.+..+...+|.+++.|+.+.+.++... +...+|.++.+| +.+.+. +
T Consensus 245 ~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L------------------------~~i~l~-~ 297 (394)
T 4gt6_A 245 PAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPAL------------------------QDIEFS-S 297 (394)
T ss_dssp SEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTC------------------------CEEECC-T
T ss_pred ceEEcC-CcceEcccceeeecccccEEecccccce-ecCccccccccc------------------------ccccCC-C
Confidence 111111 1122233445555555555555433222 333444444444 444443 2
Q ss_pred ccccccCCCCcCcCcCceEeeccceeeeecCCCccCccceeEEeecCCcccCCccccccCCCcccEEEccCCccCccCch
Q 001988 476 KISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFWNLKDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPT 555 (985)
Q Consensus 476 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 555 (985)
.++.+...+|.++++|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.++.+|+.+++.+|.... .
T Consensus 298 ~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~ 372 (394)
T 4gt6_A 298 RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---N 372 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---H
T ss_pred cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---h
Confidence 233344445566666666666543 45555566666666666666433 555556667777777777777765431 3
Q ss_pred hhcccccceeeeeecceec
Q 001988 556 TLEGLKSLQNISLAYNRLE 574 (985)
Q Consensus 556 ~~~~l~~L~~L~Ls~N~l~ 574 (985)
.+....+|+.+.+..|.+.
T Consensus 373 ~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 373 AISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp TCBCCCCC-----------
T ss_pred hhhccCCCCEEEeCCCCEE
Confidence 5566677777777666543
No 404
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.26 E-value=5.9e-12 Score=140.37 Aligned_cols=103 Identities=22% Similarity=0.329 Sum_probs=78.6
Q ss_pred eecccCc-cccccCCcccCCCCCceEEEccc-ccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEEEecC
Q 001988 174 HLFLREN-MFYGKIPSSLSKCKQLQELHLGY-NNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGF 251 (985)
Q Consensus 174 ~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 251 (985)
.++++++ +++ .+|. |..+++|++|+|++ |+|++..|..|+++++|++|+|++|+|++..|..|++|++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 676 5777 88888888888885 888876667788888888888888888877777888888888888888
Q ss_pred CcCcccCcccccCCCCCCEEEccCCcCc
Q 001988 252 NNLTGVVPATIFNMSTLKEIFLYNNSLS 279 (985)
Q Consensus 252 N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 279 (985)
|+|++..+..+..++ |+.|+|++|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 888865555555554 888888888776
No 405
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=1e-11 Score=138.32 Aligned_cols=104 Identities=15% Similarity=0.179 Sum_probs=67.3
Q ss_pred eEeeccc-eeeeecCCCccCccceeEEeecC-CcccCCccccccCCCcccEEEccCCccCccCchhhcccccceeeeeec
Q 001988 493 YLNLGSN-RFTFVIPSTFWNLKDILSFDISS-NLLDGPISLAIGNLKAVVGIDLSRNNLSGNIPTTLEGLKSLQNISLAY 570 (985)
Q Consensus 493 ~L~L~~N-~l~~~~p~~~~~l~~L~~L~ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 570 (985)
.++++++ +++. +|. +..+++|+.|+|++ |+|+++.+..|.++++|+.|+|++|+|++..|..|.+|++|++|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 6664 455 66666677777764 666666666666666666666666666666666666666666666666
Q ss_pred ceeccchhhhhhcccccCeEecCCCcccC
Q 001988 571 NRLEGPIPESFGNMTSLESLDLSNNKISG 599 (985)
Q Consensus 571 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 599 (985)
|+|++..+..|..++ |+.|+|++|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 666655555555544 6666666666653
No 406
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.21 E-value=3.1e-11 Score=128.75 Aligned_cols=147 Identities=14% Similarity=0.125 Sum_probs=115.2
Q ss_pred HHHhcCccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcC-CCCeeeEEeeeecCCceEEE
Q 001988 722 LRATDNFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIR-HRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 722 ~~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~-h~niv~l~~~~~~~~~~~lv 800 (985)
....+.|......+.|+.+.||++... ++.+++|+...........+.+|+++++.+. +..+.++++++...+..|+|
T Consensus 10 ~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv 88 (263)
T 3tm0_A 10 KKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLL 88 (263)
T ss_dssp HHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEE
T ss_pred HHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEE
Confidence 344567877788888889999999865 6889999987532233346889999999984 67788999999888899999
Q ss_pred EeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhc--------------------------------------
Q 001988 801 LEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFG-------------------------------------- 842 (985)
Q Consensus 801 ~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~-------------------------------------- 842 (985)
|||++|.++.+.... ......++.+++++++.||..
T Consensus 89 ~e~i~G~~l~~~~~~------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (263)
T 3tm0_A 89 MSEADGVLCSEEYED------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDT 162 (263)
T ss_dssp EECCSSEEHHHHCCT------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTC
T ss_pred EEecCCeehhhccCC------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccccc
Confidence 999999999876321 122346888999999999861
Q ss_pred ------------------CCCCeEeCCCCCCCEEEcCCCcEEEecccCcee
Q 001988 843 ------------------HSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKL 875 (985)
Q Consensus 843 ------------------h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~ 875 (985)
+...++|+|++|.||+++++..+.|+||+.+..
T Consensus 163 ~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~ 213 (263)
T 3tm0_A 163 PFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR 213 (263)
T ss_dssp SSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred cCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence 115589999999999998766677999998754
No 407
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=99.11 E-value=1.4e-10 Score=123.39 Aligned_cols=137 Identities=13% Similarity=0.113 Sum_probs=101.1
Q ss_pred CccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCC--eeeEEeeeecCCceEEEEecc
Q 001988 727 NFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRN--LVKIISSCSNDDFKALVLEYM 804 (985)
Q Consensus 727 ~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~n--iv~l~~~~~~~~~~~lv~e~~ 804 (985)
++......+.|..+.||++...+|+.+++|..... ....+.+|+++++.+.+.+ +.+++++...++..++||||+
T Consensus 21 ~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i 97 (264)
T 1nd4_A 21 GYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEV 97 (264)
T ss_dssp TCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECC
T ss_pred CCceEecccCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEec
Confidence 34433333456669999998877888999997644 2345788999999986444 556888888888889999999
Q ss_pred CCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcC-----------------------------------------
Q 001988 805 SNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGH----------------------------------------- 843 (985)
Q Consensus 805 ~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h----------------------------------------- 843 (985)
+|.++. ... .+ ...++.++++.+..||...
T Consensus 98 ~G~~l~--~~~----~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (264)
T 1nd4_A 98 PGQDLL--SSH----LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPA 168 (264)
T ss_dssp SSEETT--TSC----CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHH
T ss_pred CCcccC--cCc----CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHH
Confidence 998884 211 11 2357788888888885321
Q ss_pred --------------CCCeEeCCCCCCCEEEcCCCcEEEecccCcee
Q 001988 844 --------------STPIIHCDLKPSNVLLDEDMVAHLSDFGMAKL 875 (985)
Q Consensus 844 --------------~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~ 875 (985)
...++|+|++|.||++++++.+.|+|||.+..
T Consensus 169 ~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~ 214 (264)
T 1nd4_A 169 ELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV 214 (264)
T ss_dssp HHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred HHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence 12399999999999998877778999998764
No 408
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.02 E-value=1.2e-08 Score=114.88 Aligned_cols=83 Identities=5% Similarity=0.010 Sum_probs=48.4
Q ss_pred cccccccccceEeeccccccCCchhhhcCCCCCCEEEecCCcCcccCcccccCCCCCCEEEccCCcCcccCChhhhhcCC
Q 001988 212 KEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGFNNLTGVVPATIFNMSTLKEIFLYNNSLSGSLPSRIDLALP 291 (985)
Q Consensus 212 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~l~ 291 (985)
+++....+|+.+.+.. .++..-..+|.++.+|+.++|..+ ++.....+|.++ +|+.+.+..+ +. .++...|.. .
T Consensus 40 ~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~ 113 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-T 113 (379)
T ss_dssp TTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-C
T ss_pred cccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceecc-C
Confidence 3456667788877764 355344556788888888888644 554555666555 5666666543 33 344444422 3
Q ss_pred CCcEEEecC
Q 001988 292 NLEFLNLGI 300 (985)
Q Consensus 292 ~L~~L~Ls~ 300 (985)
+|+.+.+..
T Consensus 114 ~L~~i~lp~ 122 (379)
T 4h09_A 114 DLDDFEFPG 122 (379)
T ss_dssp CCSEEECCT
T ss_pred CcccccCCC
Confidence 555555543
No 409
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.01 E-value=1.1e-08 Score=115.26 Aligned_cols=83 Identities=4% Similarity=-0.008 Sum_probs=56.4
Q ss_pred ccCCCCCceEEEcccccCCCccccccccccccceEeeccccccCCchhhhcCCCCCCEEEecCCcCcccCcccccCCCCC
Q 001988 189 SLSKCKQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNKLHGEIPQEIGYLQNLDVLQLGFNNLTGVVPATIFNMSTL 268 (985)
Q Consensus 189 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 268 (985)
++....+|+.+.+.. .++..-..+|.++.+|+.+.|.++ ++..-..+|.+. +|+.+.+..+ ++.....+|.+ .+|
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL 115 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence 455667788888864 466444557889999999999754 664445667776 6777777644 55344444544 589
Q ss_pred CEEEccCC
Q 001988 269 KEIFLYNN 276 (985)
Q Consensus 269 ~~L~L~~N 276 (985)
+.+.+.++
T Consensus 116 ~~i~lp~~ 123 (379)
T 4h09_A 116 DDFEFPGA 123 (379)
T ss_dssp SEEECCTT
T ss_pred ccccCCCc
Confidence 99988765
No 410
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=99.00 E-value=1.1e-11 Score=130.14 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=31.8
Q ss_pred CcceeeeEEEeCCCCeEEEEEecC---CcccccCch-hcccccccceecccCCcCC
Q 001988 59 SICSWIGIICDVNSHKVTTLNLSS---FNLQGTIPP-EIANLSSLKSLDLSHNKLS 110 (985)
Q Consensus 59 ~~c~w~gv~c~~~~~~v~~l~L~~---~~l~g~~~~-~l~~l~~L~~L~L~~n~l~ 110 (985)
..|+|.|+.|+....+|+.+-..+ ..++|.+++ .+..++. .|....|.-+
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~--~l~~ryn~~~ 129 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKL--IMSKRYDGSQ 129 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHH--HHHHTEETTT
T ss_pred HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHH--HHHhccchhc
Confidence 358999999998777888777766 455566653 3444443 3444444444
No 411
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=1.8e-10 Score=127.75 Aligned_cols=202 Identities=13% Similarity=0.199 Sum_probs=107.6
Q ss_pred CCeEEEEEecCCcccc-c-------CchhcccccccceecccCCcCC---------CCCCcccccCCCCcEEEccCcc-c
Q 001988 72 SHKVTTLNLSSFNLQG-T-------IPPEIANLSSLKSLDLSHNKLS---------SNIPSSIFTMSTLKVLYLMDNQ-L 133 (985)
Q Consensus 72 ~~~v~~l~L~~~~l~g-~-------~~~~l~~l~~L~~L~L~~n~l~---------~~~p~~~~~l~~L~~L~Ls~n~-l 133 (985)
..+|+.|.+...++.| . +..++..+++|+.|.+..+... +.++..+..+++|+.|+|++|. +
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3467777777665553 2 2344667788888888765431 2244445567778888887762 2
Q ss_pred CCCCccccccCCccceeeeccccccCCCChhHhhhccccceecccCccccccCCcccCCCCCceEEEccc--ccCCCc--
Q 001988 134 SGSLSSFTFNTSSILDIRLSKNKLSGKLPENICNHLRYLKHLFLRENMFYGKIPSSLSKCKQLQELHLGY--NNLSGA-- 209 (985)
Q Consensus 134 ~~~~~~~~~~~~~L~~L~ls~n~l~g~lp~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~--N~l~~~-- 209 (985)
. ++. + ..++|+.|+|+.+.+.......+.. ..+++|++|+|+. |...+.
T Consensus 186 ~--l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~-----------------------~~lp~L~~L~L~~~~~~~~~~~~ 238 (362)
T 2ra8_A 186 S--IGK-K-PRPNLKSLEIISGGLPDSVVEDILG-----------------------SDLPNLEKLVLYVGVEDYGFDGD 238 (362)
T ss_dssp B--CCS-C-BCTTCSEEEEECSBCCHHHHHHHHH-----------------------SBCTTCCEEEEECBCGGGTCCSC
T ss_pred e--ecc-c-cCCCCcEEEEecCCCChHHHHHHHH-----------------------ccCCCCcEEEEeccccccccchh
Confidence 1 111 1 2445555555554443221112211 1344555555432 111110
Q ss_pred ---ccccc--ccccccceEeeccccccCCchhhhc---CCCCCCEEEecCCcCccc----CcccccCCCCCCEEEccCCc
Q 001988 210 ---IPKEI--GNLTVLQRISLINNKLHGEIPQEIG---YLQNLDVLQLGFNNLTGV----VPATIFNMSTLKEIFLYNNS 277 (985)
Q Consensus 210 ---~p~~~--~~l~~L~~L~L~~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~ 277 (985)
+...+ ..+++|++|+|.+|.+....+..+. .+++|++|+|+.|.+++. ++..+.++++|+.|+|++|.
T Consensus 239 ~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 239 MNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 00111 2356677777777666544433333 466777888877777753 33444556778888888887
Q ss_pred CcccCChhhhhcCCCCcEEEecCcc
Q 001988 278 LSGSLPSRIDLALPNLEFLNLGINS 302 (985)
Q Consensus 278 l~~~~p~~~~~~l~~L~~L~Ls~N~ 302 (985)
++...-..+...+ ...++++.|+
T Consensus 319 i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 319 LSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCHHHHHHHHHHc--CCEEEecCCc
Confidence 7643333332222 3557777776
No 412
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.93 E-value=5.7e-10 Score=123.69 Aligned_cols=158 Identities=12% Similarity=0.171 Sum_probs=93.2
Q ss_pred chhhhhhccCCCeEEccCCc-cccccCCCCcCcCcCceEeeccceeeeecCCCcc--CccceeEEeecC--CcccCC---
Q 001988 457 IPDEICLLSRLNELDLNGNK-ISGSISSCLGNLTSLQYLNLGSNRFTFVIPSTFW--NLKDILSFDISS--NLLDGP--- 528 (985)
Q Consensus 457 ~p~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~ls~--N~l~~~--- 528 (985)
++..+..+++|+.|+|++|. +. ++. +. +++|+.|+|..+.++......+. .+++|+.|+|+. |...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~--l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLS--IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCB--CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred HHHHHhcCCCCcEEEEeCCCCce--ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 44555666777777777763 21 222 32 67777888777776543222232 567777777753 221111
Q ss_pred --ccccc--cCCCcccEEEccCCccCccCchhhc---ccccceeeeeecceeccc----hhhhhhcccccCeEecCCCcc
Q 001988 529 --ISLAI--GNLKAVVGIDLSRNNLSGNIPTTLE---GLKSLQNISLAYNRLEGP----IPESFGNMTSLESLDLSNNKI 597 (985)
Q Consensus 529 --~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l 597 (985)
+...+ ..+++|+.|+|++|.+.+..+..+. .+++|++|+|+.|.|++. ++..+..+++|+.|+|++|.|
T Consensus 240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 00112 2467888888888887654444443 467888888888888763 344445678888888888877
Q ss_pred cCCCCccccc-ccccccccccccc
Q 001988 598 SGSIPVSFEK-LSYLKELNLSFNK 620 (985)
Q Consensus 598 ~~~~p~~~~~-l~~L~~L~ls~N~ 620 (985)
+...-..+.. + .-.+++++|+
T Consensus 320 ~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 320 SDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CHHHHHHHHHHC--CSEEECCSBC
T ss_pred CHHHHHHHHHHc--CCEEEecCCc
Confidence 6432222222 1 2456777776
No 413
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.89 E-value=3.8e-09 Score=118.03 Aligned_cols=141 Identities=14% Similarity=0.198 Sum_probs=106.9
Q ss_pred CceeeccCceeEEEEEEcCCcEEEEEEec--cCC-cchHHHHHHHHHHHHhcC--CCCeeeEEeeeecC---CceEEEEe
Q 001988 731 NNIIGIGGFGSVYRARLEDGVEIAIKVFH--PQC-ASTLKSFEAECEVIKNIR--HRNLVKIISSCSND---DFKALVLE 802 (985)
Q Consensus 731 ~~~ig~G~~g~V~~~~~~~~~~vAvK~~~--~~~-~~~~~~~~~E~~il~~l~--h~niv~l~~~~~~~---~~~~lv~e 802 (985)
.+.++.|.++.||++...+ ..+++|+.. ... ......+.+|.++++.+. +..+++++.++.+. +..|+|||
T Consensus 43 ~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme 121 (359)
T 3dxp_A 43 VEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIME 121 (359)
T ss_dssp EEECCC-CCSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEE
T ss_pred EEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEE
Confidence 4678999999999998764 678888775 332 122456789999999996 45688899998776 45899999
Q ss_pred ccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcC---------------------------------------
Q 001988 803 YMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGH--------------------------------------- 843 (985)
Q Consensus 803 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h--------------------------------------- 843 (985)
|++|..+.+... ..++...+..++.+++++|+.||...
T Consensus 122 ~v~G~~l~~~~~---~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (359)
T 3dxp_A 122 FVSGRVLWDQSL---PGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAMD 198 (359)
T ss_dssp CCCCBCCCCTTC---TTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred ecCCeecCCCcc---ccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHHH
Confidence 999987754221 23677888899999999999998520
Q ss_pred ----------------CCCeEeCCCCCCCEEEcCCCc--EEEecccCcee
Q 001988 844 ----------------STPIIHCDLKPSNVLLDEDMV--AHLSDFGMAKL 875 (985)
Q Consensus 844 ----------------~~~ivHrDlk~~Nill~~~~~--~kl~DfGla~~ 875 (985)
...++|||+++.||+++.++. +.|+||+.+..
T Consensus 199 ~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 199 SLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp HHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred HHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 357999999999999997753 68999999875
No 414
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.56 E-value=8.7e-09 Score=108.14 Aligned_cols=105 Identities=25% Similarity=0.318 Sum_probs=63.5
Q ss_pred cCCCCCceE--EEcccccCCCcccc----ccccccccceEeeccccccC--CchhhhcCCCCCCEEEecCCcCcccCccc
Q 001988 190 LSKCKQLQE--LHLGYNNLSGAIPK----EIGNLTVLQRISLINNKLHG--EIPQEIGYLQNLDVLQLGFNNLTGVVPAT 261 (985)
Q Consensus 190 l~~l~~L~~--L~L~~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 261 (985)
|...+.|+. ++++.|+.. .++. ...++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..
T Consensus 137 l~~dp~L~~~~l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~ 213 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RE 213 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GG
T ss_pred cCCCcchhhcCccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hh
Confidence 444445554 566666433 2222 22456677777777777776 4456667777777777777777754 22
Q ss_pred ccCCC--CCCEEEccCCcCcccCCh------hhhhcCCCCcEEE
Q 001988 262 IFNMS--TLKEIFLYNNSLSGSLPS------RIDLALPNLEFLN 297 (985)
Q Consensus 262 l~~l~--~L~~L~L~~N~l~~~~p~------~~~~~l~~L~~L~ 297 (985)
+..+. +|++|+|++|.+.+.+|. .+...+|+|+.||
T Consensus 214 l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 214 LDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 33333 777777777777766652 2345667776664
No 415
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.52 E-value=4.7e-07 Score=99.09 Aligned_cols=136 Identities=15% Similarity=0.193 Sum_probs=100.9
Q ss_pred CccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCC----CCeeeEEeeeecCCceEEEEe
Q 001988 727 NFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRH----RNLVKIISSCSNDDFKALVLE 802 (985)
Q Consensus 727 ~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h----~niv~l~~~~~~~~~~~lv~e 802 (985)
.+...+.++.|..+.||++ +..+++|+.... .....+.+|.++++.+.+ ..+.+++++ +..++|||
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~~--~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~lvme 107 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKRD--SVRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFNIMK 107 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESSH--HHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCEEEE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCcH--HHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEEEEe
Confidence 4556678999999999998 667888976432 224568999999999865 224555555 56789999
Q ss_pred ccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcC---------------------------------------
Q 001988 803 YMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGH--------------------------------------- 843 (985)
Q Consensus 803 ~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h--------------------------------------- 843 (985)
|++|.++.+.... .++..++..++.++++.++.||...
T Consensus 108 ~i~G~~l~~~~~~---~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (320)
T 3r70_A 108 YIKGERITYEQYH---KLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQLLTDE 184 (320)
T ss_dssp CCCCBCCCHHHHT---TSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred ecCCccccccccc---cCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhccccccc
Confidence 9999888643321 3456666777888888888877321
Q ss_pred ---------------------CCCeEeCCCCCCCEEEcCCCcEEEecccCcee
Q 001988 844 ---------------------STPIIHCDLKPSNVLLDEDMVAHLSDFGMAKL 875 (985)
Q Consensus 844 ---------------------~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~ 875 (985)
...++|+|++|.||+++.+..+.|+||+.+..
T Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~ 237 (320)
T 3r70_A 185 MLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNV 237 (320)
T ss_dssp HHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEE
T ss_pred chHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCccccc
Confidence 23459999999999999976789999998865
No 416
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.45 E-value=6.6e-07 Score=97.21 Aligned_cols=136 Identities=18% Similarity=0.211 Sum_probs=100.0
Q ss_pred CceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcC-CCC--eeeEEeeeecCC---ceEEEEecc
Q 001988 731 NNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIR-HRN--LVKIISSCSNDD---FKALVLEYM 804 (985)
Q Consensus 731 ~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~-h~n--iv~l~~~~~~~~---~~~lv~e~~ 804 (985)
.+.++.|.+..||++. ..+++|+-... .....+.+|.++++.+. +.. +.+++......+ ..|+|||++
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i 98 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKI 98 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECC
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEccc
Confidence 4568999999999864 45889985432 34567899999999883 332 445555544333 358999999
Q ss_pred CCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhc------------------------------------------
Q 001988 805 SNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFG------------------------------------------ 842 (985)
Q Consensus 805 ~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~------------------------------------------ 842 (985)
+|.++.+.... .++..++..++.++++.++.||..
T Consensus 99 ~G~~l~~~~~~---~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 175 (304)
T 3sg8_A 99 KGVPLTPLLLN---NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDD 175 (304)
T ss_dssp CCEECCHHHHH---TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred CCeECCccccc---cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHH
Confidence 99888754332 356777778888888888888741
Q ss_pred -------------CCCCeEeCCCCCCCEEEcC--CCcEEEecccCcee
Q 001988 843 -------------HSTPIIHCDLKPSNVLLDE--DMVAHLSDFGMAKL 875 (985)
Q Consensus 843 -------------h~~~ivHrDlk~~Nill~~--~~~~kl~DfGla~~ 875 (985)
....++|+|++|.||++++ ...+.|+||+.+..
T Consensus 176 ~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~ 223 (304)
T 3sg8_A 176 FYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAI 223 (304)
T ss_dssp HHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEE
T ss_pred HHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCcc
Confidence 1245899999999999998 56688999998875
No 417
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.43 E-value=2.5e-06 Score=91.48 Aligned_cols=77 Identities=17% Similarity=0.183 Sum_probs=62.0
Q ss_pred cCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCC---CeeeEEeeeecCCceEEEEeccC
Q 001988 729 AENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHR---NLVKIISSCSNDDFKALVLEYMS 805 (985)
Q Consensus 729 ~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~---niv~l~~~~~~~~~~~lv~e~~~ 805 (985)
...+.++.|.++.||++...+|+.+++|+...........+..|++.++.+.+. .+++++++. ..++||||++
T Consensus 18 ~~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme~l~ 93 (288)
T 3d1u_A 18 AAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWVD 93 (288)
T ss_dssp EEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECCC
T ss_pred cceeeeCCcchhheEEEEeCCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEEecc
Confidence 345679999999999999888999999996544333346789999999999765 577888764 3689999999
Q ss_pred CCCh
Q 001988 806 NGSL 809 (985)
Q Consensus 806 ~gsL 809 (985)
|+++
T Consensus 94 g~~~ 97 (288)
T 3d1u_A 94 ERPP 97 (288)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9875
No 418
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.40 E-value=6e-08 Score=96.85 Aligned_cols=66 Identities=14% Similarity=0.116 Sum_probs=30.4
Q ss_pred cCCCCCCEEEecCCcCccc----CcccccCCCCCCEEEc--cCCcCcccCChhh---hhcCCCCcEEEecCccCC
Q 001988 239 GYLQNLDVLQLGFNNLTGV----VPATIFNMSTLKEIFL--YNNSLSGSLPSRI---DLALPNLEFLNLGINSFS 304 (985)
Q Consensus 239 ~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L--~~N~l~~~~p~~~---~~~l~~L~~L~Ls~N~l~ 304 (985)
...++|++|+|++|.|+.. +...+...++|++|+| ++|.+.......+ ....++|++|+|++|.+.
T Consensus 90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3334455555555555432 2334444455555555 4455543211111 123355666666666554
No 419
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.38 E-value=2.6e-06 Score=92.40 Aligned_cols=136 Identities=14% Similarity=0.114 Sum_probs=95.8
Q ss_pred CceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCC---CeeeEEeeee-cCCceEEEEeccCC
Q 001988 731 NNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHR---NLVKIISSCS-NDDFKALVLEYMSN 806 (985)
Q Consensus 731 ~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~---niv~l~~~~~-~~~~~~lv~e~~~~ 806 (985)
.+.++.|....||+. +..+++|+-. .......+.+|.++++.+.+. .+.+++.++. ..+..++||||++|
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~--~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G 97 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPK--SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQG 97 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEES--SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCS
T ss_pred eeecCCCcceeEEEE----CCEEEEEecC--CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCC
Confidence 356888999999998 5678888742 223456789999999999642 3566777764 45667899999999
Q ss_pred CChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhc--------------------------------------------
Q 001988 807 GSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFG-------------------------------------------- 842 (985)
Q Consensus 807 gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~-------------------------------------------- 842 (985)
.++.+.... .++..++..++.++++.|+.||..
T Consensus 98 ~~l~~~~~~---~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 174 (306)
T 3tdw_A 98 QILGEDGMA---VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTL 174 (306)
T ss_dssp EECHHHHHT---TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHHHH
T ss_pred eECchhhhh---hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHHHH
Confidence 887663221 234444555555555555555531
Q ss_pred -------------CCCCeEeCCCCCCCEEEcC---CCc-EEEecccCcee
Q 001988 843 -------------HSTPIIHCDLKPSNVLLDE---DMV-AHLSDFGMAKL 875 (985)
Q Consensus 843 -------------h~~~ivHrDlk~~Nill~~---~~~-~kl~DfGla~~ 875 (985)
....++|+|+++.||+++. ++. +.|+||+.+..
T Consensus 175 ~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~ 224 (306)
T 3tdw_A 175 RFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI 224 (306)
T ss_dssp HHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred HHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence 3345799999999999987 455 58999998765
No 420
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.36 E-value=1.1e-07 Score=94.88 Aligned_cols=112 Identities=10% Similarity=0.046 Sum_probs=55.7
Q ss_pred hccccceecccCc-ccccc----CCcccCCCCCceEEEcccccCCCc----cccccccccccceEeeccccccCC----c
Q 001988 168 HLRYLKHLFLREN-MFYGK----IPSSLSKCKQLQELHLGYNNLSGA----IPKEIGNLTVLQRISLINNKLHGE----I 234 (985)
Q Consensus 168 ~l~~L~~L~L~~n-~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~ 234 (985)
..++|++|+|++| .+... +...+...++|++|+|++|.|... +...+...++|++|+|++|.|... +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 3455666666665 55421 233444455566666666655432 122233334555666666655432 2
Q ss_pred hhhhcCCCCCCEEEe--cCCcCccc----CcccccCCCCCCEEEccCCcCc
Q 001988 235 PQEIGYLQNLDVLQL--GFNNLTGV----VPATIFNMSTLKEIFLYNNSLS 279 (985)
Q Consensus 235 p~~~~~l~~L~~L~L--s~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~ 279 (985)
.+.+...++|++|+| ++|.|+.. +...+...++|++|+|++|.+.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 344445555666666 55555532 2233344455666666655553
No 421
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.31 E-value=4.2e-06 Score=89.07 Aligned_cols=135 Identities=19% Similarity=0.143 Sum_probs=98.1
Q ss_pred eeeccCce-eEEEEEEc-CCcEEEEEEeccCCcchHHHHHHHHHHHHhcC-CCCeeeEEeeeecCCceEEEEeccCCCCh
Q 001988 733 IIGIGGFG-SVYRARLE-DGVEIAIKVFHPQCASTLKSFEAECEVIKNIR-HRNLVKIISSCSNDDFKALVLEYMSNGSL 809 (985)
Q Consensus 733 ~ig~G~~g-~V~~~~~~-~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~gsL 809 (985)
.+..|..| .||+.... ++..+++|+-... ....+.+|.++++.+. +--+.++++++.+.+..++|||+++|.++
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~ 107 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTA 107 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEH
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccc
Confidence 45556665 59998765 5677999986532 3456788999999884 33477889999998999999999999887
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhc-----------------------------------------------
Q 001988 810 EDCLHSSNCALNIFCRLNIMIDIASALEYLHFG----------------------------------------------- 842 (985)
Q Consensus 810 ~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~----------------------------------------------- 842 (985)
.+..... ......++.++++.|..||..
T Consensus 108 ~~~~~~~-----~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (272)
T 4gkh_A 108 FQVLEEY-----PDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKE 182 (272)
T ss_dssp HHHHHHC-----GGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHHH
T ss_pred cccccCC-----HHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHHH
Confidence 7654432 122334566666666666631
Q ss_pred --------CCCCeEeCCCCCCCEEEcCCCcEEEecccCcee
Q 001988 843 --------HSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKL 875 (985)
Q Consensus 843 --------h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~ 875 (985)
+...++|+|+.+.||++++++.+-|+||+.+..
T Consensus 183 l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~ 223 (272)
T 4gkh_A 183 MHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGI 223 (272)
T ss_dssp HHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred HHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECccccc
Confidence 122378999999999999887778999998765
No 422
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.26 E-value=5.3e-06 Score=92.17 Aligned_cols=140 Identities=11% Similarity=0.147 Sum_probs=90.6
Q ss_pred CCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCC--eeeEEeeeecC-CceEEEEeccCC
Q 001988 730 ENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRN--LVKIISSCSND-DFKALVLEYMSN 806 (985)
Q Consensus 730 ~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~n--iv~l~~~~~~~-~~~~lv~e~~~~ 806 (985)
..+.++.|....||+... +++.+++|..... ..+..|..+++.+.... +.+++.++... +..|+||||++|
T Consensus 45 ~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~-----~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~e~l~G 118 (362)
T 3ovc_A 45 DLMQLSEGEESRAFSFDV-GGRGYVLRVNSCA-----DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRAQG 118 (362)
T ss_dssp EEEEEEECSSEEEEEEEE-TTEEEEEEEESCC-----HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEEECCCS
T ss_pred eEEECCCCCcceEEEEEE-CCcEEEEEeCCch-----hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEEEecCC
Confidence 346688999999999886 5888999987533 35889999999986533 56777777654 668999999998
Q ss_pred CChHHH------------------hhcCCCC----------------CCHHHH---------------------HHHHHH
Q 001988 807 GSLEDC------------------LHSSNCA----------------LNIFCR---------------------LNIMID 831 (985)
Q Consensus 807 gsL~~~------------------l~~~~~~----------------~~~~~~---------------------~~i~~~ 831 (985)
.++.+. ++..... -+|... ......
T Consensus 119 ~~l~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~gl~~~~~~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (362)
T 3ovc_A 119 VTLQDLPETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQTVMDDTVSASVAQA 198 (362)
T ss_dssp EETTTSCGGGSGGGHHHHHHHHHHHHHCCCTTCBCEEEECTTSBEEESSHHHHHHGGGCTTTCCHHHHCCTTTHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHhcCCCccccCccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccccchHH
Confidence 655321 1111000 001111 001111
Q ss_pred HHHHHHHHHh-cCCCCeEeCCCCCCCEEEcCCCcEEEecccCcee
Q 001988 832 IASALEYLHF-GHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKL 875 (985)
Q Consensus 832 i~~~L~~Lh~-~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~ 875 (985)
+....+++.. .....++|+|+.+.||++++++.+.|+||+.+..
T Consensus 199 ~~~l~~~l~~lp~~~~l~HgDl~~~Nil~~~~~~~~viD~~~~~~ 243 (362)
T 3ovc_A 199 LDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMF 243 (362)
T ss_dssp HHHHHHHGGGCCCCCEEECSSCSSTTEEEETTEEEEECCCTTCEE
T ss_pred HHHHHHHHhhCCCCcEEEeCCCCCCeEEEeCCCEEEEECCccccc
Confidence 1112222211 1125689999999999998888889999998876
No 423
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=98.19 E-value=2.9e-06 Score=94.39 Aligned_cols=79 Identities=8% Similarity=0.015 Sum_probs=56.5
Q ss_pred cee-eccCceeEEEEEEc-------CCcEEEEEEeccCC---cchHHHHHHHHHHHHhcC-C--CCeeeEEeeeecC---
Q 001988 732 NII-GIGGFGSVYRARLE-------DGVEIAIKVFHPQC---ASTLKSFEAECEVIKNIR-H--RNLVKIISSCSND--- 794 (985)
Q Consensus 732 ~~i-g~G~~g~V~~~~~~-------~~~~vAvK~~~~~~---~~~~~~~~~E~~il~~l~-h--~niv~l~~~~~~~--- 794 (985)
+.| +.|..+.+|+.... +++.+++|+..... ......+.+|+++++.+. + -.+.+++.++.+.
T Consensus 26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~ 105 (357)
T 3ats_A 26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVL 105 (357)
T ss_dssp EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTT
T ss_pred EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCcc
Confidence 567 78889999998764 26789999765432 111245788999998884 2 3577888887665
Q ss_pred CceEEEEeccCCCChH
Q 001988 795 DFKALVLEYMSNGSLE 810 (985)
Q Consensus 795 ~~~~lv~e~~~~gsL~ 810 (985)
+..++||||++|..+.
T Consensus 106 g~~~~v~e~l~G~~l~ 121 (357)
T 3ats_A 106 GTPFFLMDYVEGVVPP 121 (357)
T ss_dssp SSCEEEEECCCCBCCC
T ss_pred CCceEEEEecCCCChh
Confidence 4568999999987654
No 424
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.97 E-value=2.9e-05 Score=87.58 Aligned_cols=75 Identities=17% Similarity=0.192 Sum_probs=50.3
Q ss_pred CceeeccCceeEEEEEEc-CCcEEEEEEeccCCc-------chHHHHHHHHHHHHhcCC--C-CeeeEEeeeecCCceEE
Q 001988 731 NNIIGIGGFGSVYRARLE-DGVEIAIKVFHPQCA-------STLKSFEAECEVIKNIRH--R-NLVKIISSCSNDDFKAL 799 (985)
Q Consensus 731 ~~~ig~G~~g~V~~~~~~-~~~~vAvK~~~~~~~-------~~~~~~~~E~~il~~l~h--~-niv~l~~~~~~~~~~~l 799 (985)
.+.+|.|..+.||++... +++.|+||...+... .....+..|.++++.+.. + .+.+++.+ +.+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence 457899999999999754 568899998654321 123456789999988742 3 34456654 3445689
Q ss_pred EEeccCCC
Q 001988 800 VLEYMSNG 807 (985)
Q Consensus 800 v~e~~~~g 807 (985)
||||+++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999764
No 425
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.92 E-value=4.1e-05 Score=84.40 Aligned_cols=139 Identities=16% Similarity=0.192 Sum_probs=81.4
Q ss_pred ceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCC--CCeeeEEe------eeecCCceEEEEec
Q 001988 732 NIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRH--RNLVKIIS------SCSNDDFKALVLEY 803 (985)
Q Consensus 732 ~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h--~niv~l~~------~~~~~~~~~lv~e~ 803 (985)
+.|+.|..+.||++...+| .+++|+.... ...+..|.++++.+.. -.+.+++. +....+..++||||
T Consensus 38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~----~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~ 112 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDSG-AVCLKRIHRP----EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDW 112 (346)
T ss_dssp EECC----CEEEEEEETTE-EEEEEEECSC----HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEEC
T ss_pred eeccccccCcEEEEEeCCC-CEEEEecCCC----HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEe
Confidence 3466677899999988655 5899998752 2344556666665531 12334443 11345677899999
Q ss_pred cCCCChH--------------HHhhcC--CC-----------CCCHHHHH------------------------------
Q 001988 804 MSNGSLE--------------DCLHSS--NC-----------ALNIFCRL------------------------------ 826 (985)
Q Consensus 804 ~~~gsL~--------------~~l~~~--~~-----------~~~~~~~~------------------------------ 826 (985)
++|.++. ..+|.. .. ...|....
T Consensus 113 i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (346)
T 2q83_A 113 IEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQEI 192 (346)
T ss_dssp CCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 9986542 112211 00 01222110
Q ss_pred -HHHHHHHHHHHHHHh----------cCCCCeEeCCCCCCCEEEcCCCcEEEecccCcee
Q 001988 827 -NIMIDIASALEYLHF----------GHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKL 875 (985)
Q Consensus 827 -~i~~~i~~~L~~Lh~----------~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~ 875 (985)
.+...+..++++++. .....++|+|+++.||+++.++.+.|+||+.+..
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~ 252 (346)
T 2q83_A 193 DGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVSF 252 (346)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCEE
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhccc
Confidence 011123345666642 1367899999999999998888999999998764
No 426
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.75 E-value=1.9e-05 Score=76.63 Aligned_cols=84 Identities=12% Similarity=0.146 Sum_probs=59.8
Q ss_pred CCceEEEcccccCCCccccccccccccceEeecccc-ccCCchhhhcCC----CCCCEEEecCCc-CcccCcccccCCCC
Q 001988 194 KQLQELHLGYNNLSGAIPKEIGNLTVLQRISLINNK-LHGEIPQEIGYL----QNLDVLQLGFNN-LTGVVPATIFNMST 267 (985)
Q Consensus 194 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~ 267 (985)
.+|++|||+++.++..--..+.++++|++|+|++|. ++..--..++.+ ++|++|+|++|. |+..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468888888888876655667778888888888875 664444456654 368888888874 77655556667777
Q ss_pred CCEEEccCCc
Q 001988 268 LKEIFLYNNS 277 (985)
Q Consensus 268 L~~L~L~~N~ 277 (985)
|++|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888887774
No 427
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.68 E-value=0.00025 Score=76.40 Aligned_cols=136 Identities=14% Similarity=0.133 Sum_probs=92.1
Q ss_pred CceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcC---CCCeeeEEeeeecCCceEEEEeccCCC
Q 001988 731 NNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIR---HRNLVKIISSCSNDDFKALVLEYMSNG 807 (985)
Q Consensus 731 ~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~---h~niv~l~~~~~~~~~~~lv~e~~~~g 807 (985)
.+.|+.|....+|+... ++..+++|+.... ....+..|.+.|+.+. ...+++++.++...+..++||||++|.
T Consensus 41 ~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G~ 116 (312)
T 3jr1_A 41 KEKLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNKS 116 (312)
T ss_dssp EEEECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCCC
T ss_pred eEEeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccCC
Confidence 35689999999999986 4678899987533 3467889999998883 366888999888888899999999987
Q ss_pred ChHH-----------HhhcCCC---------------------CCCHHHHH---HHHHH----------------HHHH-
Q 001988 808 SLED-----------CLHSSNC---------------------ALNIFCRL---NIMID----------------IASA- 835 (985)
Q Consensus 808 sL~~-----------~l~~~~~---------------------~~~~~~~~---~i~~~----------------i~~~- 835 (985)
.+.. .++.... .-+|.... ++..+ +.+.
T Consensus 117 ~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~~l 196 (312)
T 3jr1_A 117 KNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQIV 196 (312)
T ss_dssp CCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 6421 1222111 01454321 11111 1111
Q ss_pred HHHHHh-cCCCCeEeCCCCCCCEEEcCCCcEEEeccc
Q 001988 836 LEYLHF-GHSTPIIHCDLKPSNVLLDEDMVAHLSDFG 871 (985)
Q Consensus 836 L~~Lh~-~h~~~ivHrDlk~~Nill~~~~~~kl~DfG 871 (985)
...|.. .....++|+|+.+.|++++.++ +.|.||.
T Consensus 197 ~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 197 ADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 123311 1256799999999999999887 8899984
No 428
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.63 E-value=0.00034 Score=74.91 Aligned_cols=78 Identities=17% Similarity=0.191 Sum_probs=58.3
Q ss_pred CccCCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcC-C--CCeeeEEeeeecCCceEEEEec
Q 001988 727 NFAENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIR-H--RNLVKIISSCSNDDFKALVLEY 803 (985)
Q Consensus 727 ~~~~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~-h--~niv~l~~~~~~~~~~~lv~e~ 803 (985)
.....+.+|.|..+.||+.+..||++|++|+-..........+..|.+.|+.+. . --+++++++. ..++||||
T Consensus 16 ~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~~~lv~e~ 91 (288)
T 3f7w_A 16 EVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEW 91 (288)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEEC
T ss_pred CeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc----CceEEEEe
Confidence 344567789999999999999999999999876554444456889999999884 2 2345555542 24789999
Q ss_pred cCCCC
Q 001988 804 MSNGS 808 (985)
Q Consensus 804 ~~~gs 808 (985)
++++.
T Consensus 92 l~~~~ 96 (288)
T 3f7w_A 92 VDERP 96 (288)
T ss_dssp CCCCC
T ss_pred ecccC
Confidence 98764
No 429
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.60 E-value=5e-05 Score=73.71 Aligned_cols=84 Identities=17% Similarity=0.114 Sum_probs=48.2
Q ss_pred cceeEEeecCCcccCCccccccCCCcccEEEccCCc-cCccCchhhccc----ccceeeeeecce-eccchhhhhhcccc
Q 001988 513 KDILSFDISSNLLDGPISLAIGNLKAVVGIDLSRNN-LSGNIPTTLEGL----KSLQNISLAYNR-LEGPIPESFGNMTS 586 (985)
Q Consensus 513 ~~L~~L~ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~~~~l~~ 586 (985)
..|+.||++++.|+...-..+..+++|+.|+|+++. |++.--..++.+ ++|++|+|++|. |+..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 345666666665554444445566666666666663 554333344443 356677776653 66544455666666
Q ss_pred cCeEecCCCc
Q 001988 587 LESLDLSNNK 596 (985)
Q Consensus 587 L~~L~Ls~N~ 596 (985)
|++|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777776654
No 430
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.50 E-value=0.00044 Score=78.45 Aligned_cols=73 Identities=15% Similarity=0.148 Sum_probs=45.9
Q ss_pred CceeeccCceeEEEEEEcCCcEEEEEEeccCCc------c---hHHHHHHHHHHHH-hcCCCCeeeEEeeeecCCceEEE
Q 001988 731 NNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCA------S---TLKSFEAECEVIK-NIRHRNLVKIISSCSNDDFKALV 800 (985)
Q Consensus 731 ~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~------~---~~~~~~~E~~il~-~l~h~niv~l~~~~~~~~~~~lv 800 (985)
.+.+|.|..+.||++.. +++.++||...+... . ....++.|+..+. ......+.+++.+. .+..++|
T Consensus 39 i~~l~~G~~n~vyrv~~-~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~--~~~~~lv 115 (420)
T 2pyw_A 39 IKEVGDGNLNFVFIVVG-SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD--RTMALIG 115 (420)
T ss_dssp EEECCCSSSCEEEEEEC-SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE--TTTTEEE
T ss_pred EEEccCCCcEEEEEEEc-CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCccEEE
Confidence 45689999999999965 467899995332110 1 2233444443332 22334566777765 4567899
Q ss_pred Eecc-CC
Q 001988 801 LEYM-SN 806 (985)
Q Consensus 801 ~e~~-~~ 806 (985)
|||+ ++
T Consensus 116 ~e~l~~g 122 (420)
T 2pyw_A 116 MRYLEPP 122 (420)
T ss_dssp ECCCCTT
T ss_pred EeecCCc
Confidence 9999 76
No 431
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=97.37 E-value=0.00074 Score=73.47 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=89.5
Q ss_pred cCHHHHHHHhcCccCC-----ceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCC--eeeEE
Q 001988 716 FSYFELLRATDNFAEN-----NIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRN--LVKII 788 (985)
Q Consensus 716 ~~~~~~~~~~~~~~~~-----~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~n--iv~l~ 788 (985)
++..++......|... +.|+.|....||+....+| .+++|..... .....+..|+++++.+.... +.+++
T Consensus 7 ~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~--~~~~~l~~e~~~l~~L~~~g~~vP~~~ 83 (322)
T 2ppq_A 7 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKR--VEKNDLPFFLGLMQHLAAKGLSCPLPL 83 (322)
T ss_dssp CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBC
T ss_pred CCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCC--CCHHHHHHHHHHHHHHHHCCCCCCccc
Confidence 4455555555556542 3466788899999988665 6889988753 12345667888887774212 33333
Q ss_pred ee------eecCCceEEEEeccCCCChHH--------------HhhcC----CCC----C---CHHHHHH----------
Q 001988 789 SS------CSNDDFKALVLEYMSNGSLED--------------CLHSS----NCA----L---NIFCRLN---------- 827 (985)
Q Consensus 789 ~~------~~~~~~~~lv~e~~~~gsL~~--------------~l~~~----~~~----~---~~~~~~~---------- 827 (985)
.. ....+..+++|||++|..+.. .++.. ... . .|.....
T Consensus 84 ~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 163 (322)
T 2ppq_A 84 PRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVE 163 (322)
T ss_dssp CBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTS
T ss_pred CCCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhh
Confidence 22 122356789999999865321 12211 000 1 1221100
Q ss_pred --HHHHHHHHHHHHHhc----CCCCeEeCCCCCCCEEEcCCCcEEEecccCcee
Q 001988 828 --IMIDIASALEYLHFG----HSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKL 875 (985)
Q Consensus 828 --i~~~i~~~L~~Lh~~----h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~ 875 (985)
+...+.+.+++++.. ...+++|+|+.+.||++++++.+.|+||+.+..
T Consensus 164 ~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~ 217 (322)
T 2ppq_A 164 KGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACN 217 (322)
T ss_dssp TTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred hhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhccC
Confidence 001134445555321 245799999999999999876678999998764
No 432
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=97.30 E-value=0.0008 Score=73.64 Aligned_cols=139 Identities=13% Similarity=0.156 Sum_probs=75.3
Q ss_pred ceeeccCcee-EEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCC--CCeeeEEeeeecCCceEEEEeccCCCC
Q 001988 732 NIIGIGGFGS-VYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRH--RNLVKIISSCSNDDFKALVLEYMSNGS 808 (985)
Q Consensus 732 ~~ig~G~~g~-V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h--~niv~l~~~~~~~~~~~lv~e~~~~gs 808 (985)
+.++.|+... +|+....++..+++|....... ..+..|+++++.+.. -.+.+++.+..+.+ ++|||++++..
T Consensus 24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~~---~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~g--~ll~e~l~~~~ 98 (333)
T 3csv_A 24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPEEG---GDTQPFVDLAQYLRNLDISAPEIYAEEHARG--LLLIEDLGDAL 98 (333)
T ss_dssp CC--------CCEEEECTTCCEEEEEECCTTTT---CCSHHHHHHHHHHHHTTCBCCCEEEEETTTT--EEEECCCCSCB
T ss_pred eECCCCCCCceEEEEEcCCCCeEEEEECCCCCC---ccccHHHHHHHHHHhCCCCCCceeeecCCCC--EEEEeeCCCcc
Confidence 3455565554 6677664477788886544321 334567777777632 23556776644433 78999997766
Q ss_pred hHHHhhcC-------------------------CCCCCHHHHH-------H-H------------HHHHHHHHHHHH---
Q 001988 809 LEDCLHSS-------------------------NCALNIFCRL-------N-I------------MIDIASALEYLH--- 840 (985)
Q Consensus 809 L~~~l~~~-------------------------~~~~~~~~~~-------~-i------------~~~i~~~L~~Lh--- 840 (985)
+.+++... ...++..... . + ...+...++.+.
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~ 178 (333)
T 3csv_A 99 FTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFAQILSAQ 178 (333)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 65433211 0112211100 0 0 001111222221
Q ss_pred hcCCCCeEeCCCCCCCEEEcCC----CcEEEecccCcee
Q 001988 841 FGHSTPIIHCDLKPSNVLLDED----MVAHLSDFGMAKL 875 (985)
Q Consensus 841 ~~h~~~ivHrDlk~~Nill~~~----~~~kl~DfGla~~ 875 (985)
..+...++|||+.+.||+++.+ +.+.|+||+.+..
T Consensus 179 ~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~ 217 (333)
T 3csv_A 179 LEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL 217 (333)
T ss_dssp CCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred ccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence 1245679999999999999875 7899999998876
No 433
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=97.17 E-value=0.0022 Score=69.92 Aligned_cols=157 Identities=13% Similarity=0.141 Sum_probs=90.9
Q ss_pred ccCHHHHHHHhcCcc-----CCceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCC--CeeeE
Q 001988 715 RFSYFELLRATDNFA-----ENNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHR--NLVKI 787 (985)
Q Consensus 715 ~~~~~~~~~~~~~~~-----~~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~--niv~l 787 (985)
..+.+++....+.|. ....++ |....||++...+|+.+++|...... .....+..|..+++.+... .++++
T Consensus 10 ~l~~~~i~~~l~~~g~~~~~~~~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~vp~~ 87 (328)
T 1zyl_A 10 TLHPDTIMDALFEHGIRVDSGLTPLN-SYENRVYQFQDEDRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVAAP 87 (328)
T ss_dssp CCCHHHHHHHHHHTTCCCCSCCEEEC-CSSSEEEEECCTTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBCCC
T ss_pred CCCHHHHHHHHHHcCCCCCceEEeec-CcccceEEEEcCCCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCeecce
Confidence 344455544444442 223566 88889999888778789999987442 2345677888888877422 24444
Q ss_pred Eee-----eecCCceEEEEeccCCCChH-----HH---------hhcC--------CCCCCHHHH----HHH--------
Q 001988 788 ISS-----CSNDDFKALVLEYMSNGSLE-----DC---------LHSS--------NCALNIFCR----LNI-------- 828 (985)
Q Consensus 788 ~~~-----~~~~~~~~lv~e~~~~gsL~-----~~---------l~~~--------~~~~~~~~~----~~i-------- 828 (985)
+.. ....+..++||||++|..+. .. ++.. ...+++... ..+
T Consensus 88 ~~~~g~~~~~~~g~~~~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (328)
T 1zyl_A 88 VAFNGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIP 167 (328)
T ss_dssp CCBTTBSCEEETTEEEEEEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSC
T ss_pred eecCCcEEEEECCEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCC
Confidence 443 12245567899999875431 10 1110 011222211 001
Q ss_pred -------HHHHHHHHHHHHh----cCCCCeEeCCCCCCCEEEcCCCcEEEecccCcee
Q 001988 829 -------MIDIASALEYLHF----GHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKL 875 (985)
Q Consensus 829 -------~~~i~~~L~~Lh~----~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~ 875 (985)
...+...++.+.. .....++|+|+++.||+++ + .+.|+||+.+..
T Consensus 168 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~ 223 (328)
T 1zyl_A 168 SGLKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN 223 (328)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence 0111122333321 1356689999999999999 4 899999998764
No 434
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.15 E-value=0.00021 Score=70.64 Aligned_cols=86 Identities=19% Similarity=0.186 Sum_probs=42.8
Q ss_pred CCCCCceEEEcccc-cCCCc----cccccccccccceEeeccccccC----CchhhhcCCCCCCEEEecCCcCccc----
Q 001988 191 SKCKQLQELHLGYN-NLSGA----IPKEIGNLTVLQRISLINNKLHG----EIPQEIGYLQNLDVLQLGFNNLTGV---- 257 (985)
Q Consensus 191 ~~l~~L~~L~L~~N-~l~~~----~p~~~~~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~---- 257 (985)
.+-+.|++|+|++| +|... +-+.+..-+.|+.|+|++|+|.. .+.+.+..-+.|++|+|++|.|+..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 33445566666553 55421 22233334455555555555542 2233344455666666666666532
Q ss_pred CcccccCCCCCCEEEccCC
Q 001988 258 VPATIFNMSTLKEIFLYNN 276 (985)
Q Consensus 258 ~p~~l~~l~~L~~L~L~~N 276 (985)
+-.++..-+.|++|+|++|
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 2233444455666666654
No 435
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=97.09 E-value=0.0015 Score=70.35 Aligned_cols=136 Identities=15% Similarity=0.177 Sum_probs=76.4
Q ss_pred CceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCe-eeEEeeeecCCceEEEEecc-CCCC
Q 001988 731 NNIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNL-VKIISSCSNDDFKALVLEYM-SNGS 808 (985)
Q Consensus 731 ~~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~ni-v~l~~~~~~~~~~~lv~e~~-~~gs 808 (985)
.+.|+.|....+|++ ..+++|+....... .....+|..+++.+....+ .+++++. .+.-++|+||+ +|.+
T Consensus 23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~-~~~r~~E~~~l~~l~~~g~~P~~~~~~--~~~~~~v~e~i~~g~~ 94 (301)
T 3dxq_A 23 PLERLGGLTNLVFRA-----GDLCLRIPGKGTEE-YINRANEAVAAREAAKAGVSPEVLHVD--PATGVMVTRYIAGAQT 94 (301)
T ss_dssp CEEEESCSSEEEEEE-----TTEEEEEECC-----CCCHHHHHHHHHHHHHTTSSCCEEEEC--TTTCCEEEECCTTCEE
T ss_pred eeEcCCcccccccee-----eeEEEECCCCCccc-eeCHHHHHHHHHHHHHcCCCCceEEEE--CCCCEEEEeecCCCcc
Confidence 678999999999998 45888987653211 1223568888877742222 4566554 33346899999 6544
Q ss_pred hHH------------------HhhcCCCC----CCHHHH-HHHHH--------------HHHHHHH----HHH-hcCCCC
Q 001988 809 LED------------------CLHSSNCA----LNIFCR-LNIMI--------------DIASALE----YLH-FGHSTP 846 (985)
Q Consensus 809 L~~------------------~l~~~~~~----~~~~~~-~~i~~--------------~i~~~L~----~Lh-~~h~~~ 846 (985)
+.. .+|..... .+.... ..+.. .+.+.+. .+. ......
T Consensus 95 l~~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~ 174 (301)
T 3dxq_A 95 MSPEKFKTRPGSPARAGEAFRKLHGSGAVFPFRFELFAMIDDYLKVLSTKNVTLPAGYHDVVREAGGVRSALAAHPLPLA 174 (301)
T ss_dssp CCHHHHHHSTTHHHHHHHHHHHHHTSCCCCSSBCCHHHHHHHHHHHHC--CCCCCTTHHHHHHHHHHHHHHHHSSCCCCE
T ss_pred CCHhhHhhhHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhcCCCce
Confidence 421 01111110 111111 11100 0111111 111 113445
Q ss_pred eEeCCCCCCCEEEcCCCcEEEecccCcee
Q 001988 847 IIHCDLKPSNVLLDEDMVAHLSDFGMAKL 875 (985)
Q Consensus 847 ivHrDlk~~Nill~~~~~~kl~DfGla~~ 875 (985)
++|+|+.+.||+ ..++.+.++||..+..
T Consensus 175 l~HgDl~~~Nil-~~~~~~~lID~e~a~~ 202 (301)
T 3dxq_A 175 ACHCDPLCENFL-DTGERMWIVDWEYSGM 202 (301)
T ss_dssp EECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred eeccCCCcCCEE-ECCCCEEEEecccccC
Confidence 899999999999 6677889999998875
No 436
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=97.06 E-value=0.002 Score=71.33 Aligned_cols=139 Identities=14% Similarity=0.168 Sum_probs=83.7
Q ss_pred ceeeccCceeEEEEEEc--------CCcEEEEEEeccCCcchHHHHHHHHHHHHhcC-CCCeeeEEeeeecCCceEEEEe
Q 001988 732 NIIGIGGFGSVYRARLE--------DGVEIAIKVFHPQCASTLKSFEAECEVIKNIR-HRNLVKIISSCSNDDFKALVLE 802 (985)
Q Consensus 732 ~~ig~G~~g~V~~~~~~--------~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~-h~niv~l~~~~~~~~~~~lv~e 802 (985)
+.+..|-...+|++... +++.|++|+.... ........+|.++++.+. +.-..++++++.. .+|||
T Consensus 56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~e 130 (379)
T 3feg_A 56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-LQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLEQ 130 (379)
T ss_dssp EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEEE
T ss_pred EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc-cchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEEE
Confidence 45777889999999874 3578999986332 223455678999998884 3334567776654 28999
Q ss_pred ccCCCChHHH-----------------hhcC----CCCCC--HHHHHHHHHHHHH-------------------HHHHHH
Q 001988 803 YMSNGSLEDC-----------------LHSS----NCALN--IFCRLNIMIDIAS-------------------ALEYLH 840 (985)
Q Consensus 803 ~~~~gsL~~~-----------------l~~~----~~~~~--~~~~~~i~~~i~~-------------------~L~~Lh 840 (985)
|++|.++... +|.. +.... +.+..++..++.. .++.|.
T Consensus 131 ~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 210 (379)
T 3feg_A 131 YIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLR 210 (379)
T ss_dssp CCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHH
T ss_pred EecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHH
Confidence 9998654310 1211 11222 3344444433321 223332
Q ss_pred -----hcCCCCeEeCCCCCCCEEEcCC----CcEEEecccCcee
Q 001988 841 -----FGHSTPIIHCDLKPSNVLLDED----MVAHLSDFGMAKL 875 (985)
Q Consensus 841 -----~~h~~~ivHrDlk~~Nill~~~----~~~kl~DfGla~~ 875 (985)
......++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 211 ~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~ 254 (379)
T 3feg_A 211 KLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY 254 (379)
T ss_dssp HHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred HHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence 1234568999999999999876 7899999998875
No 437
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.06 E-value=0.00014 Score=71.89 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=21.3
Q ss_pred hccCCCeEEccCC-ccccc----cCCCCcCcCcCceEeeccceeee
Q 001988 463 LLSRLNELDLNGN-KISGS----ISSCLGNLTSLQYLNLGSNRFTF 503 (985)
Q Consensus 463 ~l~~L~~L~L~~N-~l~~~----~~~~~~~l~~L~~L~L~~N~l~~ 503 (985)
.-+.|++|+|++| +|... +...+..-+.|+.|+|++|+|..
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd 84 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD 84 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCCh
Confidence 3455667777664 55421 22333444555666666655543
No 438
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=96.98 E-value=0.0023 Score=72.45 Aligned_cols=72 Identities=19% Similarity=0.255 Sum_probs=49.9
Q ss_pred ceeeccCceeEEEEEEcC--------CcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCC-eeeEEeeeecCCceEEEEe
Q 001988 732 NIIGIGGFGSVYRARLED--------GVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRN-LVKIISSCSNDDFKALVLE 802 (985)
Q Consensus 732 ~~ig~G~~g~V~~~~~~~--------~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~n-iv~l~~~~~~~~~~~lv~e 802 (985)
+.|+.|....||++...+ ++.|++|+.... .....+.+|..+++.+...+ ..++++.+.. .+|||
T Consensus 79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v~e 152 (429)
T 1nw1_A 79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLEE 152 (429)
T ss_dssp EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEEC
T ss_pred EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEEEE
Confidence 567889899999998753 578999988432 11145567999998884333 3567776542 38999
Q ss_pred ccCCCCh
Q 001988 803 YMSNGSL 809 (985)
Q Consensus 803 ~~~~gsL 809 (985)
|++|.++
T Consensus 153 ~l~G~~l 159 (429)
T 1nw1_A 153 YIPSRPL 159 (429)
T ss_dssp CCCEEEC
T ss_pred EeCCccc
Confidence 9986443
No 439
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=96.67 E-value=0.0087 Score=68.05 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=48.7
Q ss_pred CceeeccCceeEEEEEEcC-CcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCe-eeEEeeeecCCceEEEEeccCCCC
Q 001988 731 NNIIGIGGFGSVYRARLED-GVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNL-VKIISSCSNDDFKALVLEYMSNGS 808 (985)
Q Consensus 731 ~~~ig~G~~g~V~~~~~~~-~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~ni-v~l~~~~~~~~~~~lv~e~~~~gs 808 (985)
.+.|+.|-...+|++...+ +..|++|+....... ...-.+|..+++.+...++ .++++.+. + .+||||++|.+
T Consensus 113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~~-~idR~~E~~vl~~L~~~gl~P~ll~~~~-~---G~v~e~I~G~~ 187 (458)
T 2qg7_A 113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKTDE-IINREREKKISCILYNKNIAKKIYVFFT-N---GRIEEFMDGYA 187 (458)
T ss_dssp EEEECC--CEEEEEEEETTTTEEEEEEEECC-CCS-CSCHHHHHHHHHHHTTSSSBCCEEEEET-T---EEEEECCCSEE
T ss_pred EEEcCCCeEeEEEEEEECCCCceEEEEECCCChhh-hcCHHHHHHHHHHHHhcCCCCCEEEEeC-C---eEEEEeeCCcc
Confidence 3568889999999998865 578999987543211 1112589999999864444 56777763 2 35999998754
Q ss_pred h
Q 001988 809 L 809 (985)
Q Consensus 809 L 809 (985)
+
T Consensus 188 l 188 (458)
T 2qg7_A 188 L 188 (458)
T ss_dssp C
T ss_pred C
Confidence 3
No 440
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.64 E-value=0.0038 Score=69.30 Aligned_cols=73 Identities=14% Similarity=0.262 Sum_probs=44.8
Q ss_pred ceeeccCceeEEEEEEcC---------CcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCC-eeeEEeeeecCCceEEEE
Q 001988 732 NIIGIGGFGSVYRARLED---------GVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRN-LVKIISSCSNDDFKALVL 801 (985)
Q Consensus 732 ~~ig~G~~g~V~~~~~~~---------~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~n-iv~l~~~~~~~~~~~lv~ 801 (985)
+.++.|....+|++...+ ++.+++|+..... ........|.++++.+...+ ..++++.. . -++||
T Consensus 39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~-~~~~~~~~E~~~l~~L~~~g~~P~~~~~~--~--~~~v~ 113 (369)
T 3c5i_A 39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHV-DELYNTISEFEVYKTMSKYKIAPQLLNTF--N--GGRIE 113 (369)
T ss_dssp EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTG-GGTSCHHHHHHHHHHHHHTTSSCCEEEEE--T--TEEEE
T ss_pred EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCc-cceecHHHHHHHHHHHHhcCCCCceEEec--C--CcEEE
Confidence 457788889999998754 2688888875432 11122467888888874333 44666554 2 36899
Q ss_pred eccCCCCh
Q 001988 802 EYMSNGSL 809 (985)
Q Consensus 802 e~~~~gsL 809 (985)
||++|.++
T Consensus 114 e~i~G~~l 121 (369)
T 3c5i_A 114 EWLYGDPL 121 (369)
T ss_dssp ECCCSEEC
T ss_pred EEecCCcC
Confidence 99987543
No 441
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.58 E-value=0.0013 Score=60.66 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=19.8
Q ss_pred ccCeEecCCCcccCCCCcccccccccccccccccccc
Q 001988 586 SLESLDLSNNKISGSIPVSFEKLSYLKELNLSFNKLK 622 (985)
Q Consensus 586 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 622 (985)
+|+.|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 3555555555555444444555555555555555554
No 442
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=96.55 E-value=0.006 Score=66.74 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=43.6
Q ss_pred cCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcC---CCCeeeEEee------eecCCceEEEEeccCCC
Q 001988 737 GGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIR---HRNLVKIISS------CSNDDFKALVLEYMSNG 807 (985)
Q Consensus 737 G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~---h~niv~l~~~------~~~~~~~~lv~e~~~~g 807 (985)
|....||+....+| .+++|+...... ..|+++++.+. -|.+++++.. ....+..++||||++|.
T Consensus 34 g~~N~vy~v~~~~g-~~vLK~~~~~~~------~~E~~~l~~L~~~g~~~vp~pi~~~~G~~~~~~~g~~~~l~~~i~G~ 106 (339)
T 3i1a_A 34 DTNAFAYQADSESK-SYFIKLKYGYHD------EINLSIIRLLHDSGIKEIIFPIHTLEAKLFQQLKHFKIIAYPFIHAP 106 (339)
T ss_dssp CSSCEEEEEECSSC-EEEEEEEECSSC------CHHHHHHHHHHHTTCCSSCCCCCCTTSCSSEECSSEEEEEEECCCCC
T ss_pred ccccceEEEEeCCC-CEEEEEecCccc------hHHHHHHHHHHhcCCcccccceecCCCCEEEEECCEEEEEEeccCCC
Confidence 33678999998777 899998765431 35666666552 2324555433 23356778999999987
Q ss_pred Ch
Q 001988 808 SL 809 (985)
Q Consensus 808 sL 809 (985)
.+
T Consensus 107 ~~ 108 (339)
T 3i1a_A 107 NG 108 (339)
T ss_dssp BT
T ss_pred cC
Confidence 55
No 443
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.25 E-value=0.0033 Score=58.01 Aligned_cols=56 Identities=21% Similarity=0.328 Sum_probs=34.6
Q ss_pred EEEccCCccC-ccCchhhcccccceeeeeecceeccchhhhhhcccccCeEecCCCccc
Q 001988 541 GIDLSRNNLS-GNIPTTLEGLKSLQNISLAYNRLEGPIPESFGNMTSLESLDLSNNKIS 598 (985)
Q Consensus 541 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 598 (985)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 23343322 35667777777777666666777777777777777664
No 444
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=96.11 E-value=0.025 Score=62.74 Aligned_cols=140 Identities=15% Similarity=0.169 Sum_probs=83.4
Q ss_pred ceeeccCceeEEEEEEcC--------CcEEEEEEeccCCcc------------------hHHHHHHHHHHHHhcC-CCCe
Q 001988 732 NIIGIGGFGSVYRARLED--------GVEIAIKVFHPQCAS------------------TLKSFEAECEVIKNIR-HRNL 784 (985)
Q Consensus 732 ~~ig~G~~g~V~~~~~~~--------~~~vAvK~~~~~~~~------------------~~~~~~~E~~il~~l~-h~ni 784 (985)
+.|..|-...+|++..++ ++.|.+++.-..... .......|..+++.+. +.-.
T Consensus 58 ~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi~ 137 (401)
T 3f2s_A 58 SVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLG 137 (401)
T ss_dssp EEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTSS
T ss_pred EEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCCC
Confidence 456678899999998753 367888886543211 0112235888888884 4445
Q ss_pred eeEEeeeecCCceEEEEeccCCCChHH--H---------------hhcC----CCCCC--HHHHHHHHHHHH--------
Q 001988 785 VKIISSCSNDDFKALVLEYMSNGSLED--C---------------LHSS----NCALN--IFCRLNIMIDIA-------- 833 (985)
Q Consensus 785 v~l~~~~~~~~~~~lv~e~~~~gsL~~--~---------------l~~~----~~~~~--~~~~~~i~~~i~-------- 833 (985)
.++++++.. .+|+||++|-+|.. . +|.. ..... +....++..++.
T Consensus 138 Pkl~~~~~~----G~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~ 213 (401)
T 3f2s_A 138 PKLYGIFPQ----GRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEES 213 (401)
T ss_dssp CCEEEEETT----EEEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSHH
T ss_pred CeEEEEeCC----CeEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhccCcchh
Confidence 677777643 28999999754421 0 1111 11222 223333333221
Q ss_pred --------------HHHHH----HHh-cCCCCeEeCCCCCCCEEEcCC------CcEEEecccCcee
Q 001988 834 --------------SALEY----LHF-GHSTPIIHCDLKPSNVLLDED------MVAHLSDFGMAKL 875 (985)
Q Consensus 834 --------------~~L~~----Lh~-~h~~~ivHrDlk~~Nill~~~------~~~kl~DfGla~~ 875 (985)
.-+.. +.. .....++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 214 ~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~~ 280 (401)
T 3f2s_A 214 RIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCEE
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCCc
Confidence 11222 211 244568999999999999887 7899999998865
No 445
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=95.70 E-value=0.026 Score=63.31 Aligned_cols=73 Identities=12% Similarity=0.211 Sum_probs=48.3
Q ss_pred ceeeccCceeEEEEEEcC--------CcEEEEEEeccCCcchHHHHHHHHHHHHhcC-CCCeeeEEeeeecCCceEEEEe
Q 001988 732 NIIGIGGFGSVYRARLED--------GVEIAIKVFHPQCASTLKSFEAECEVIKNIR-HRNLVKIISSCSNDDFKALVLE 802 (985)
Q Consensus 732 ~~ig~G~~g~V~~~~~~~--------~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~-h~niv~l~~~~~~~~~~~lv~e 802 (985)
+.+..|-...+|+....+ ++.|++|+..... .....-.+|.++++.+. +.-..++++.+. -+.|||
T Consensus 76 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t-~~~idR~~E~~~l~~L~~~gi~P~l~~~~~----~~~I~e 150 (424)
T 3mes_A 76 KQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHV-GKFYDSKVELDVFRYLSNINIAPNIIADFP----EGRIEE 150 (424)
T ss_dssp EEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC--CCCCHHHHHHHHHHHHHTTSSCCEEEEET----TEEEEE
T ss_pred EEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCc-chhcCHHHHHHHHHHHHhcCCCCCEEEEcC----CCEEEE
Confidence 457778899999998753 5789999865432 11122357888888874 333455665432 268999
Q ss_pred ccCCCCh
Q 001988 803 YMSNGSL 809 (985)
Q Consensus 803 ~~~~gsL 809 (985)
|++|.++
T Consensus 151 fI~G~~l 157 (424)
T 3mes_A 151 FIDGEPL 157 (424)
T ss_dssp CCCSEEC
T ss_pred EeCCccC
Confidence 9998653
No 446
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=95.17 E-value=0.061 Score=53.34 Aligned_cols=143 Identities=13% Similarity=0.044 Sum_probs=92.0
Q ss_pred ChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCceeccCCCCcceecc
Q 001988 808 SLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAKLLSGEDESTMRTQ 887 (985)
Q Consensus 808 sL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~ 887 (985)
+|.+.|...+.++++.+.+.++.|.+.+|.-.- +++.-..+=+.|..|++..+|.|...+ +.+.
T Consensus 34 SL~eIL~~~~~PlsEEqaWALc~Qc~~~L~~~~--~~~~~~~~i~~~~~i~l~~dG~V~f~~-~~s~------------- 97 (229)
T 2yle_A 34 SLEEILRLYNQPINEEQAWAVCYQCCGSLRAAA--RRRQPRHRVRSAAQIRVWRDGAVTLAP-AADD------------- 97 (229)
T ss_dssp EHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH--HTTCCCCCCCSGGGEEEETTSCEEECC-C----------------
T ss_pred cHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhh--hcccCCceecCCcceEEecCCceeccc-cccc-------------
Confidence 799999988889999999999999999987762 111111233346899999999988764 1110
Q ss_pred cccccccccccccccCccchhhhcccccccchhhhcccccccCcchhhhhHHHHHHHHHHHHHHccCC------------
Q 001988 888 TLATIGYMAPDEIFVGELSLKRWVNDLLPVSLVEVVDKSLLSGEEKHFAAKEQCLLSIFSLALECTME------------ 955 (985)
Q Consensus 888 ~~gt~~y~aPE~~~~~~~~~~~dv~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~------------ 955 (985)
.....+.|||... ...+.+.-| +++|+.++..+++.+.....+.... .+.+|+..|...
T Consensus 98 -~~~~~~~~pe~~~-~~~te~~~I-ysLG~tLY~ALDygL~e~eE~eLS~------~LE~LL~~Mt~~~~d~~~~DeG~~ 168 (229)
T 2yle_A 98 -AGEPPPVAGKLGY-SQCMETEVI-ESLGIIIYKALDYGLKENEERELSP------PLEQLIDHMANTVEADGSNDEGYE 168 (229)
T ss_dssp ----------CCSS-SSSCHHHHH-HHHHHHHHHHHTTTCCTTEEECCCH------HHHHHHHHHTTCCC----------
T ss_pred -ccccCCCChhhcc-ccchHHHHH-HHHHHHHHHHhhcCCCcccchhhCH------HHHHHHHHHHhccccccccccccc
Confidence 1223567887753 334455556 9999999999999887665443333 244455555433
Q ss_pred -------------CCCCCCCHHHHHHHHHHhHh
Q 001988 956 -------------SPEKRIDAKDTITRLLKIRD 975 (985)
Q Consensus 956 -------------~P~~RPt~~ev~~~L~~i~~ 975 (985)
.+..|++.++|++....-.+
T Consensus 169 ~~~eg~~d~~~~~~~~~~~sl~~Vi~~C~~hl~ 201 (229)
T 2yle_A 169 AAEEGLGDEDEKRKISAIRSYRDVMKLCAAHLP 201 (229)
T ss_dssp ----------CCSCCCCCCSHHHHHHHHHTTSS
T ss_pred ccccccccccccccccCcCCHHHHHHHHHhhcc
Confidence 35688999999988766544
No 447
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=91.52 E-value=0.58 Score=52.07 Aligned_cols=29 Identities=31% Similarity=0.427 Sum_probs=25.2
Q ss_pred eEeCCCCCCCEEE------cCCCcEEEecccCcee
Q 001988 847 IIHCDLKPSNVLL------DEDMVAHLSDFGMAKL 875 (985)
Q Consensus 847 ivHrDlk~~Nill------~~~~~~kl~DfGla~~ 875 (985)
++|+|+.+.||++ +++..++++||.+|..
T Consensus 246 fcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~ 280 (401)
T 3g15_A 246 FCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred eEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence 5799999999999 4567899999999875
No 448
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=71.27 E-value=0.44 Score=54.05 Aligned_cols=59 Identities=12% Similarity=0.074 Sum_probs=16.8
Q ss_pred CceeeccCceeEEEEEEcC-CcEEEE------EEeccCCc--chHHHHHHHHHHHHhcCCCCeeeEEeeee
Q 001988 731 NNIIGIGGFGSVYRARLED-GVEIAI------KVFHPQCA--STLKSFEAECEVIKNIRHRNLVKIISSCS 792 (985)
Q Consensus 731 ~~~ig~G~~g~V~~~~~~~-~~~vAv------K~~~~~~~--~~~~~~~~E~~il~~l~h~niv~l~~~~~ 792 (985)
.+.+| ||.||+|.+.. ..+||| |..+.... .....+.+|..+++..+|||+++.+++..
T Consensus 147 ~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~ 214 (463)
T 3cxl_A 147 YEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV 214 (463)
T ss_dssp TTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred cccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence 45566 99999998753 467888 76654321 22346788999999999999999887653
No 449
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=69.46 E-value=11 Score=37.46 Aligned_cols=84 Identities=13% Similarity=0.180 Sum_probs=59.2
Q ss_pred CCCCeeeEEeeeecCCceEEEEeccCCCChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEEE
Q 001988 780 RHRNLVKIISSCSNDDFKALVLEYMSNGSLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVLL 859 (985)
Q Consensus 780 ~h~niv~l~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nill 859 (985)
.||++ -...-.+.+...+.++.-+++.=+..++ ..+...+++++.+++.... .|...-+|--+.|+|+++
T Consensus 48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i~----~~~~~eKlrll~nl~~L~~----~~~~~r~tf~l~P~NL~f 117 (219)
T 4ano_A 48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAIR----KTTLLSRIRAAIHLVSKVK----HHSARRLIFIVCPENLMF 117 (219)
T ss_dssp SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHHH----TSCHHHHHHHHHHHHHHHS----SCCSSSEECCCCGGGEEE
T ss_pred cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHHH----hcCHHHHHHHHHHHHHHHH----HhhhCceeEEEeCceEEE
Confidence 57888 4444466777666666554443233343 3578889998888776554 134567888999999999
Q ss_pred cCCCcEEEecccCc
Q 001988 860 DEDMVAHLSDFGMA 873 (985)
Q Consensus 860 ~~~~~~kl~DfGla 873 (985)
|.++.+++.-.|+-
T Consensus 118 ~~~~~p~i~hRGi~ 131 (219)
T 4ano_A 118 NRALEPFFLHVGVK 131 (219)
T ss_dssp CTTCCEEESCCEET
T ss_pred eCCCcEEEEEcCCc
Confidence 99999999987753
No 450
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=60.69 E-value=12 Score=36.83 Aligned_cols=83 Identities=11% Similarity=0.151 Sum_probs=58.9
Q ss_pred CCCCeeeEEeeeecCCceEEEEeccCCC-ChHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCeEeCCCCCCCEE
Q 001988 780 RHRNLVKIISSCSNDDFKALVLEYMSNG-SLEDCLHSSNCALNIFCRLNIMIDIASALEYLHFGHSTPIIHCDLKPSNVL 858 (985)
Q Consensus 780 ~h~niv~l~~~~~~~~~~~lv~e~~~~g-sL~~~l~~~~~~~~~~~~~~i~~~i~~~L~~Lh~~h~~~ivHrDlk~~Nil 858 (985)
.||+++.. .+-.+.+.+.+.++.-+.+ +... ++ ..+...+++++.+|+...+++ ..-+|--+.|+|++
T Consensus 43 ~~~~Fl~~-~I~e~eD~v~~~y~~~~~~~~f~~-ik----~~~~~eKlr~l~ni~~l~~~~-----~~r~tf~L~P~NL~ 111 (215)
T 4ann_A 43 HSPYFIDA-ELTELRDSFQIHYDINDNHTPFDN-IK----SFTKNEKLRYLLNIKNLEEVN-----RTRYTFVLAPDELF 111 (215)
T ss_dssp CCTTBCCE-EEEECSSEEEEEECCCTTSEEGGG-GG----GSCHHHHHHHHHHGGGGGGGG-----GSSEECCCSGGGEE
T ss_pred cCCcccce-EEEEcccEEEEEEEcCcccCCHHH-HH----hcCHHHHHHHHHHHHHHHHHh-----cCceEEEEecceEE
Confidence 58888866 5556666655555544322 2222 33 357889999999988776554 33578889999999
Q ss_pred EcCCCcEEEecccCc
Q 001988 859 LDEDMVAHLSDFGMA 873 (985)
Q Consensus 859 l~~~~~~kl~DfGla 873 (985)
++.++.+++.-.|+-
T Consensus 112 f~~~~~p~i~~RGik 126 (215)
T 4ann_A 112 FTRDGLPIAKTRGLQ 126 (215)
T ss_dssp ECTTSCEEESCCEET
T ss_pred EcCCCCEEEEEccCc
Confidence 999999999987764
No 451
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=39.92 E-value=30 Score=23.58 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhcCC
Q 001988 683 TLVIAVALALKRGK 696 (985)
Q Consensus 683 ~~~~~~~~~~~r~~ 696 (985)
++++++.++++|+|
T Consensus 25 ~li~~l~~~~~rrr 38 (38)
T 2k1k_A 25 ALLLGILVFRSRRA 38 (38)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHeecC
Confidence 33444455555543
No 452
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=39.00 E-value=53 Score=23.20 Aligned_cols=12 Identities=8% Similarity=-0.213 Sum_probs=5.2
Q ss_pred HHHHHHhcCCCc
Q 001988 687 AVALALKRGKRG 698 (985)
Q Consensus 687 ~~~~~~~r~~~~ 698 (985)
.+++++.|+++.
T Consensus 29 ~~~~~~~RRr~~ 40 (44)
T 2ks1_B 29 LGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHHHhhhhHh
Confidence 334444444433
No 453
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=33.53 E-value=2.9e+02 Score=31.82 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHH--HHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCce
Q 001988 822 IFCRLNIMIDIA--SALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAK 874 (985)
Q Consensus 822 ~~~~~~i~~~i~--~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~ 874 (985)
+..+..++..+| ..+.|+ .|| +|=.++|||++.+|++.=+|||.+-
T Consensus 454 ~~a~~nF~~S~A~ySvv~YI-----LGi--gDRH~~NILld~tG~v~HIDFG~~f 501 (614)
T 3ls8_A 454 AEVMDTYVKSCAGYCVITYI-----LGV--GDRHLDNLLLTKTGKLFHIDFGYIL 501 (614)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HTC--CCCCTTSEEECTTSCEEECCCSSCT
T ss_pred HHHHHHHHHHHHHHhHhhee-----eec--cCCCCcceeEcCCCCEeeeehHHhh
Confidence 455666666554 246666 333 6888999999999999999999873
No 454
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=31.56 E-value=48 Score=28.12 Aligned_cols=45 Identities=16% Similarity=0.096 Sum_probs=26.7
Q ss_pred cccccCCcCCCCCCccEEEccCCCCCCCCCccccccccccceeccc
Q 001988 405 ISGNIPKAIGNLSNLIVLSLGGNNLSGSIPVTFGGLQKLQGLDLAF 450 (985)
Q Consensus 405 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 450 (985)
++.+...+|.++++|+.+.|-.+ ++.+-..+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444556666666766666543 4445556666666666666654
No 455
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=29.54 E-value=1.9e+02 Score=30.53 Aligned_cols=135 Identities=13% Similarity=0.082 Sum_probs=67.6
Q ss_pred ceeeccCceeEEEEEEcCCcEEEEEEeccCCcchHHHHHHHHHHHHhcCCCCeeeEEee---------------------
Q 001988 732 NIIGIGGFGSVYRARLEDGVEIAIKVFHPQCASTLKSFEAECEVIKNIRHRNLVKIISS--------------------- 790 (985)
Q Consensus 732 ~~ig~G~~g~V~~~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~h~niv~l~~~--------------------- 790 (985)
+....| .+.||.+.. ++..|+||... ....+.+-.++...-.+.-|+.--+...
T Consensus 75 ~~s~~G-stgvff~~t-d~~~~VVK~s~---~l~~E~l~s~LA~~LGlpiP~~Riv~~~~~E~~e~~~~L~~~~~~~~~l 149 (342)
T 1cja_A 75 ERSEKG-TEGLFFVET-ESGVFIVKRST---NIESETFCSLLCMRLGLHAPKVRVVSSNSEEGTNMLECLAAIDKSFRVI 149 (342)
T ss_dssp EECCST-TSCEEEEEE-SSCEEEEECCT---THHHHHHHHHHHHHHTCCCCCEEEEESSSHHHHHHHHHHHHHCSSSCHH
T ss_pred EeccCC-CCCeEEEEe-CCCEEEEeCcH---HHHHHHHHHHHHHHhCCCCCCeeEEeeCcHHHHHHHHHHHHhhhhhHHH
Confidence 333445 456776666 57789999441 1122223333333333445543322211
Q ss_pred -eecCCceEEEEeccCCCChHHHhhcC-CCCCCHHHHHHHHHHH--HHHHHHHHhcCCCC-eE-eCCCCCCCEEEcCCC-
Q 001988 791 -CSNDDFKALVLEYMSNGSLEDCLHSS-NCALNIFCRLNIMIDI--ASALEYLHFGHSTP-II-HCDLKPSNVLLDEDM- 863 (985)
Q Consensus 791 -~~~~~~~~lv~e~~~~gsL~~~l~~~-~~~~~~~~~~~i~~~i--~~~L~~Lh~~h~~~-iv-HrDlk~~Nill~~~~- 863 (985)
.......+++|||++|..|.+.-... ...+.. +.+.++ +-+++.+.....+- .+ +.-=.+.|||+++++
T Consensus 150 ~~l~~~~~~l~meyv~G~~L~e~~~~~~~~~f~~----~~~k~LG~Ii~FDi~InN~DR~Pl~W~n~GN~~NIL~~~~n~ 225 (342)
T 1cja_A 150 TTLANQANILLMELVRGITLNKLTTTSAPEVLTK----STMQQLGSLMALDVIVNNSDRLPIAWTNEGNLDNIMLSERGA 225 (342)
T ss_dssp HHHTTCSEEEEEECCCEEESTTCCSSSHHHHSCH----HHHHHHHHHHHHHHHHTCCSSSCSSSCSCCCGGGEEEESBTT
T ss_pred HHhhcccceehhhhcCCCccccchhhhhhhhcCH----HHHHhhchhheehhhhcCCccCcccccCCCChhheEEeCCCC
Confidence 00122456999999876655432210 001222 223332 33455554322222 11 123578999997655
Q ss_pred cEEEecccCcee
Q 001988 864 VAHLSDFGMAKL 875 (985)
Q Consensus 864 ~~kl~DfGla~~ 875 (985)
.+.++|-+.+..
T Consensus 226 ~~~~IDhn~af~ 237 (342)
T 1cja_A 226 TVVPIDSKIIPL 237 (342)
T ss_dssp CEEECSCCCCCC
T ss_pred eEEEEcCCcccc
Confidence 499999999865
No 456
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=29.36 E-value=3.8e+02 Score=31.33 Aligned_cols=45 Identities=22% Similarity=0.204 Sum_probs=32.7
Q ss_pred HHHHHHHHHHH--HHHHHHHhcCCCCeEeCCCCCCCEEEcCCCcEEEecccCce
Q 001988 823 FCRLNIMIDIA--SALEYLHFGHSTPIIHCDLKPSNVLLDEDMVAHLSDFGMAK 874 (985)
Q Consensus 823 ~~~~~i~~~i~--~~L~~Lh~~h~~~ivHrDlk~~Nill~~~~~~kl~DfGla~ 874 (985)
..+..++..+| ..+.|+ .|| +|=.++|||++.+|++.=+|||.+-
T Consensus 529 ~ar~nF~~SlA~~Svv~YI-----LGl--GDRH~~NILid~tG~v~HIDFG~~f 575 (696)
T 2x6h_A 529 EVMDTYIKSCAGYCVITYL-----LGV--GDRHLDNLLLTTNGKLFHIDFGYIL 575 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HTC--CCCCTTTEEECTTSCEEECCCCSCT
T ss_pred HHHHHHHHHHHHHHHHHHH-----ccC--CCCCCcceEEeCCCCEEEEeehhhh
Confidence 34555555554 245555 233 7889999999999999999999863
No 457
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=27.88 E-value=69 Score=22.61 Aligned_cols=12 Identities=17% Similarity=-0.111 Sum_probs=5.2
Q ss_pred HHHHHHhcCCCc
Q 001988 687 AVALALKRGKRG 698 (985)
Q Consensus 687 ~~~~~~~r~~~~ 698 (985)
..+++++|+|+.
T Consensus 28 ~~~~~~~RRRr~ 39 (44)
T 2l2t_A 28 LTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHTTCS
T ss_pred HHHHHHhhhhhh
Confidence 333444444443
No 458
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.46 E-value=1.1e+02 Score=25.86 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=32.2
Q ss_pred CCCCCCCCCccccccccccceecccccccCCchhhhhhccCCCeEEccCC
Q 001988 426 GNNLSGSIPVTFGGLQKLQGLDLAFNKLAGSIPDEICLLSRLNELDLNGN 475 (985)
Q Consensus 426 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 475 (985)
+..++.+-..+|.++.+|+.+.+-.+ ++.+-..+|.++.+|+.+.+.+.
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34556566777888888888877654 34344556677777777776654
Done!