Query 001989
Match_columns 985
No_of_seqs 764 out of 5466
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 14:00:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001989.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001989hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2040 Glycine dehydrogenase 100.0 3E-174 7E-179 1429.7 61.0 881 83-979 37-927 (1001)
2 PRK12566 glycine dehydrogenase 100.0 5E-168 1E-172 1498.7 83.6 868 92-975 7-878 (954)
3 TIGR00461 gcvP glycine dehydro 100.0 9E-164 2E-168 1474.9 88.8 866 101-976 1-870 (939)
4 PLN02414 glycine dehydrogenase 100.0 2E-159 4E-164 1456.7 91.6 882 92-976 29-910 (993)
5 PRK05367 glycine dehydrogenase 100.0 2E-154 4E-159 1422.8 87.9 867 93-976 5-878 (954)
6 COG0403 GcvP Glycine cleavage 100.0 5E-107 1E-111 877.2 42.0 438 93-530 2-447 (450)
7 PF02347 GDC-P: Glycine cleava 100.0 1E-98 2E-103 843.2 37.9 425 100-527 1-429 (429)
8 COG1003 GcvP Glycine cleavage 100.0 2.7E-79 5.8E-84 659.0 35.6 414 557-977 29-451 (496)
9 PF02347 GDC-P: Glycine cleava 100.0 1.2E-57 2.6E-62 511.8 32.2 399 514-961 5-425 (429)
10 PRK00451 glycine dehydrogenase 100.0 1.2E-55 2.7E-60 519.2 43.0 424 99-529 1-444 (447)
11 TIGR00461 gcvP glycine dehydro 100.0 9.4E-55 2E-59 527.0 39.2 403 105-529 413-863 (939)
12 PRK04366 glycine dehydrogenase 100.0 7.3E-53 1.6E-57 496.5 38.1 379 127-529 31-444 (481)
13 COG0403 GcvP Glycine cleavage 100.0 3.3E-50 7.3E-55 435.6 32.0 407 516-969 15-446 (450)
14 PRK12566 glycine dehydrogenase 100.0 6.4E-50 1.4E-54 481.1 35.6 392 105-529 426-872 (954)
15 PRK04366 glycine dehydrogenase 100.0 5.2E-49 1.1E-53 463.8 39.0 411 546-977 32-452 (481)
16 PRK05367 glycine dehydrogenase 100.0 5E-47 1.1E-51 469.1 39.9 402 101-529 420-871 (954)
17 PLN02414 glycine dehydrogenase 100.0 3.9E-45 8.5E-50 449.4 39.2 402 102-529 448-903 (993)
18 COG1003 GcvP Glycine cleavage 100.0 1E-42 2.2E-47 376.2 31.5 389 118-529 19-443 (496)
19 PRK00451 glycine dehydrogenase 100.0 6.9E-37 1.5E-41 360.2 39.9 411 515-971 7-446 (447)
20 cd00613 GDC-P Glycine cleavage 100.0 8.3E-36 1.8E-40 346.0 38.1 375 150-527 1-398 (398)
21 KOG2040 Glycine dehydrogenase 100.0 1.8E-35 3.9E-40 329.0 24.1 394 515-962 59-474 (1001)
22 cd00613 GDC-P Glycine cleavage 100.0 2.1E-33 4.5E-38 325.9 35.8 373 570-966 1-397 (398)
23 COG0520 csdA Selenocysteine ly 100.0 4.1E-33 8.9E-38 319.0 36.6 360 151-529 6-401 (405)
24 COG1104 NifS Cysteine sulfinat 100.0 2.1E-30 4.6E-35 285.4 28.2 349 591-979 2-383 (386)
25 COG0520 csdA Selenocysteine ly 100.0 2E-29 4.4E-34 288.6 33.2 367 571-972 6-404 (405)
26 PRK09295 bifunctional cysteine 100.0 2.7E-27 5.9E-32 275.4 34.3 359 151-529 6-400 (406)
27 PRK13520 L-tyrosine decarboxyl 100.0 1.1E-26 2.4E-31 266.9 31.4 356 567-972 1-370 (371)
28 PRK10874 cysteine sulfinate de 100.0 5.3E-26 1.1E-30 264.2 35.4 359 148-529 4-394 (401)
29 PF00266 Aminotran_5: Aminotra 100.0 6.4E-27 1.4E-31 269.0 27.2 327 179-523 10-371 (371)
30 TIGR03392 FeS_syn_CsdA cystein 100.0 4.9E-26 1.1E-30 264.2 34.7 356 151-529 4-391 (398)
31 PLN02855 Bifunctional selenocy 100.0 4.3E-26 9.3E-31 266.8 34.1 310 206-529 71-414 (424)
32 TIGR01788 Glu-decarb-GAD gluta 99.9 6.3E-25 1.4E-29 253.9 36.8 379 560-974 16-430 (431)
33 COG1104 NifS Cysteine sulfinat 99.9 1.4E-25 3.1E-30 247.3 29.5 292 207-530 40-374 (386)
34 TIGR01979 sufS cysteine desulf 99.9 1.1E-24 2.4E-29 253.4 34.2 308 207-529 58-397 (403)
35 PLN03032 serine decarboxylase; 99.9 1.2E-24 2.5E-29 246.6 32.6 293 628-968 62-371 (374)
36 PRK02769 histidine decarboxyla 99.9 9.6E-25 2.1E-29 249.2 32.1 297 629-972 62-371 (380)
37 TIGR01814 kynureninase kynuren 99.9 7.9E-25 1.7E-29 254.6 31.5 304 210-529 70-403 (406)
38 TIGR01976 am_tr_V_VC1184 cyste 99.9 5.5E-24 1.2E-28 247.0 33.9 298 206-527 55-397 (397)
39 PLN02651 cysteine desulfurase 99.9 3.6E-24 7.8E-29 245.5 31.4 283 207-521 39-364 (364)
40 TIGR03812 tyr_de_CO2_Arch tyro 99.9 6.9E-24 1.5E-28 244.0 32.3 356 569-969 1-372 (373)
41 TIGR03402 FeS_nifS cysteine de 99.9 1.2E-23 2.6E-28 242.6 33.9 292 206-529 37-368 (379)
42 cd06453 SufS_like Cysteine des 99.9 1.9E-23 4.1E-28 240.4 34.6 307 205-527 37-373 (373)
43 PRK09295 bifunctional cysteine 99.9 9.8E-24 2.1E-28 245.5 32.5 314 627-972 62-403 (406)
44 TIGR03392 FeS_syn_CsdA cystein 99.9 1.3E-23 2.7E-28 244.0 31.4 314 628-974 56-396 (398)
45 TIGR01977 am_tr_V_EF2568 cyste 99.9 3.4E-23 7.3E-28 238.5 33.7 302 207-529 40-375 (376)
46 PRK13520 L-tyrosine decarboxyl 99.9 4.4E-23 9.6E-28 237.1 33.4 347 147-529 1-367 (371)
47 PLN02651 cysteine desulfurase 99.9 2.5E-23 5.5E-28 238.5 31.2 296 629-959 40-364 (364)
48 PLN02263 serine decarboxylase 99.9 4.7E-23 1E-27 236.4 32.8 299 629-973 130-443 (470)
49 TIGR03402 FeS_nifS cysteine de 99.9 4.4E-23 9.4E-28 238.0 32.8 311 628-976 38-375 (379)
50 PLN02590 probable tyrosine dec 99.9 3E-23 6.5E-28 244.1 31.3 382 560-974 102-533 (539)
51 PRK10874 cysteine sulfinate de 99.9 5.6E-23 1.2E-27 238.9 32.9 314 628-974 59-399 (401)
52 PLN02855 Bifunctional selenocy 99.9 5E-23 1.1E-27 240.9 31.5 316 630-976 74-421 (424)
53 COG0076 GadB Glutamate decarbo 99.9 2.8E-23 6E-28 240.7 28.4 344 560-937 32-403 (460)
54 PF00266 Aminotran_5: Aminotra 99.9 5.9E-23 1.3E-27 236.1 30.3 303 628-960 39-370 (371)
55 TIGR01976 am_tr_V_VC1184 cyste 99.9 9.4E-23 2E-27 236.6 31.4 306 627-960 55-392 (397)
56 PRK02948 cysteine desulfurase; 99.9 1.7E-22 3.8E-27 233.1 33.4 310 629-977 40-378 (381)
57 TIGR01979 sufS cysteine desulf 99.9 1.2E-22 2.6E-27 236.2 31.9 314 630-974 60-402 (403)
58 cd06453 SufS_like Cysteine des 99.9 2.5E-22 5.4E-27 231.1 32.9 309 628-966 39-372 (373)
59 KOG1383 Glutamate decarboxylas 99.9 1.4E-22 3.1E-27 222.6 27.5 378 559-983 54-457 (491)
60 PLN02880 tyrosine decarboxylas 99.9 1.3E-22 2.8E-27 239.0 29.0 383 565-974 57-485 (490)
61 COG4992 ArgD Ornithine/acetylo 99.9 8.2E-23 1.8E-27 224.9 25.4 337 569-977 37-402 (404)
62 cd06451 AGAT_like Alanine-glyo 99.9 2.1E-22 4.5E-27 230.2 29.0 311 629-971 29-355 (356)
63 TIGR02006 IscS cysteine desulf 99.9 1.6E-21 3.4E-26 226.6 34.6 288 210-529 46-373 (402)
64 PLN02724 Molybdenum cofactor s 99.9 5E-22 1.1E-26 247.9 32.3 350 156-529 28-484 (805)
65 TIGR02006 IscS cysteine desulf 99.9 9.3E-22 2E-26 228.6 31.4 309 631-976 46-380 (402)
66 TIGR03403 nifS_epsilon cystein 99.9 1.5E-21 3.3E-26 225.3 32.7 289 209-529 40-371 (382)
67 TIGR03403 nifS_epsilon cystein 99.9 1.7E-21 3.6E-26 225.0 32.8 308 633-976 43-378 (382)
68 PTZ00094 serine hydroxymethylt 99.9 5E-22 1.1E-26 233.7 28.8 302 631-973 78-408 (452)
69 PRK13580 serine hydroxymethylt 99.9 3.3E-22 7.2E-27 229.8 26.2 304 630-974 93-446 (493)
70 COG0075 Serine-pyruvate aminot 99.9 1.1E-21 2.3E-26 218.6 29.3 325 170-529 8-359 (383)
71 TIGR01977 am_tr_V_EF2568 cyste 99.9 1.5E-21 3.3E-26 224.8 30.6 307 629-969 41-375 (376)
72 PRK02948 cysteine desulfurase; 99.9 2.9E-21 6.4E-26 222.9 32.9 292 205-529 37-370 (381)
73 TIGR03799 NOD_PanD_pyr putativ 99.9 7.1E-21 1.5E-25 224.6 36.6 375 560-962 61-516 (522)
74 cd06450 DOPA_deC_like DOPA dec 99.9 3.2E-22 6.9E-27 227.6 24.1 292 627-969 33-344 (345)
75 COG0156 BioF 7-keto-8-aminopel 99.9 3.5E-22 7.5E-27 224.8 23.2 316 164-529 43-386 (388)
76 TIGR03812 tyr_de_CO2_Arch tyro 99.9 1.4E-20 3E-25 216.6 35.3 343 149-529 1-372 (373)
77 PLN02409 serine--glyoxylate am 99.9 3.1E-21 6.6E-26 223.9 29.9 319 628-976 38-375 (401)
78 COG0112 GlyA Glycine/serine hy 99.9 6.7E-22 1.5E-26 214.3 22.1 294 634-972 74-389 (413)
79 PF00282 Pyridoxal_deC: Pyrido 99.9 2E-21 4.4E-26 221.6 27.1 317 560-893 11-360 (373)
80 TIGR01814 kynureninase kynuren 99.9 3.7E-21 8E-26 223.9 28.9 303 633-971 72-405 (406)
81 PLN02409 serine--glyoxylate am 99.9 5.9E-21 1.3E-25 221.5 29.5 323 170-529 12-368 (401)
82 TIGR02326 transamin_PhnW 2-ami 99.9 8.2E-21 1.8E-25 217.7 29.3 316 629-971 32-360 (363)
83 PRK03080 phosphoserine aminotr 99.9 6.4E-21 1.4E-25 219.4 28.2 296 210-529 47-369 (378)
84 PRK14012 cysteine desulfurase; 99.9 2E-20 4.3E-25 217.7 30.7 310 631-975 48-381 (404)
85 COG0075 Serine-pyruvate aminot 99.9 2E-20 4.3E-25 208.6 29.2 317 628-976 34-366 (383)
86 PRK02769 histidine decarboxyla 99.9 2E-20 4.3E-25 213.8 30.0 282 207-530 61-369 (380)
87 PLN02271 serine hydroxymethylt 99.9 1.1E-20 2.4E-25 217.4 27.2 311 632-972 194-539 (586)
88 TIGR02539 SepCysS Sep-tRNA:Cys 99.9 2.1E-20 4.5E-25 214.8 29.6 306 632-973 51-368 (370)
89 KOG1549 Cysteine desulfurase N 99.9 1.1E-20 2.3E-25 209.3 24.5 173 628-813 81-257 (428)
90 cd06451 AGAT_like Alanine-glyo 99.9 2.4E-20 5.1E-25 213.3 28.2 295 208-529 29-353 (356)
91 TIGR03301 PhnW-AepZ 2-aminoeth 99.9 2.8E-20 6.1E-25 212.2 28.2 314 630-970 29-354 (355)
92 PRK13479 2-aminoethylphosphona 99.9 6.6E-20 1.4E-24 210.6 30.9 318 630-974 35-364 (368)
93 PRK09331 Sep-tRNA:Cys-tRNA syn 99.9 5E-20 1.1E-24 212.9 29.4 304 633-974 64-382 (387)
94 TIGR01788 Glu-decarb-GAD gluta 99.9 2.2E-19 4.7E-24 208.0 33.4 348 139-529 15-425 (431)
95 PRK14012 cysteine desulfurase; 99.9 1.4E-19 3E-24 210.6 31.4 290 210-529 48-375 (404)
96 TIGR02326 transamin_PhnW 2-ami 99.9 1.6E-19 3.5E-24 207.0 29.4 322 171-529 7-358 (363)
97 TIGR01366 serC_3 phosphoserine 99.8 2.1E-19 4.5E-24 205.2 28.1 325 172-529 8-356 (361)
98 COG3844 Kynureninase [Amino ac 99.8 1.6E-19 3.5E-24 189.7 24.1 307 207-529 72-398 (407)
99 TIGR03235 DNA_S_dndA cysteine 99.8 7.3E-19 1.6E-23 200.8 30.7 263 206-500 37-319 (353)
100 PLN03032 serine decarboxylase; 99.8 1E-18 2.2E-23 198.3 31.2 282 206-529 61-372 (374)
101 TIGR03301 PhnW-AepZ 2-aminoeth 99.8 9.8E-19 2.1E-23 199.6 31.1 295 210-529 30-353 (355)
102 TIGR03531 selenium_SpcS O-phos 99.8 5.9E-19 1.3E-23 203.3 28.2 360 560-970 29-443 (444)
103 PRK13479 2-aminoethylphosphona 99.8 1.1E-18 2.5E-23 200.4 29.9 320 170-529 8-359 (368)
104 PRK13034 serine hydroxymethylt 99.8 4.5E-19 9.8E-24 206.2 26.7 299 632-974 70-393 (416)
105 PRK03080 phosphoserine aminotr 99.8 2.1E-19 4.6E-24 206.7 23.6 310 630-976 46-376 (378)
106 PTZ00094 serine hydroxymethylt 99.8 4.6E-19 9.9E-24 208.6 26.5 284 209-529 77-404 (452)
107 TIGR03235 DNA_S_dndA cysteine 99.8 1.4E-18 3E-23 198.5 29.4 271 630-935 40-319 (353)
108 PLN02724 Molybdenum cofactor s 99.8 4E-19 8.7E-24 221.9 27.1 320 627-972 73-487 (805)
109 TIGR01822 2am3keto_CoA 2-amino 99.8 9.1E-19 2E-23 203.0 28.2 281 205-529 77-385 (393)
110 PLN02955 8-amino-7-oxononanoat 99.8 5.6E-19 1.2E-23 203.2 25.9 311 164-529 106-457 (476)
111 KOG1359 Glycine C-acetyltransf 99.8 1.3E-19 2.8E-24 187.2 17.2 310 164-529 71-408 (417)
112 cd06452 SepCysS Sep-tRNA:Cys-t 99.8 1.8E-18 3.9E-23 198.2 28.3 301 634-971 46-360 (361)
113 PRK05937 8-amino-7-oxononanoat 99.8 1.6E-18 3.5E-23 199.2 27.9 296 625-980 49-357 (370)
114 cd00378 SHMT Serine-glycine hy 99.8 1.5E-18 3.3E-23 201.8 27.2 292 637-973 70-385 (402)
115 TIGR02539 SepCysS Sep-tRNA:Cys 99.8 6.3E-18 1.4E-22 194.3 31.9 285 205-529 45-364 (370)
116 TIGR01822 2am3keto_CoA 2-amino 99.8 1.2E-18 2.7E-23 201.9 26.2 296 628-974 79-390 (393)
117 PRK07179 hypothetical protein; 99.8 1.6E-18 3.4E-23 201.9 26.9 288 633-975 100-400 (407)
118 KOG1549 Cysteine desulfurase N 99.8 1.5E-18 3.3E-23 192.3 24.8 322 170-530 46-415 (428)
119 COG0160 GabT 4-aminobutyrate a 99.8 1.1E-18 2.4E-23 198.3 24.2 349 568-974 50-446 (447)
120 PF00464 SHMT: Serine hydroxym 99.8 2.8E-19 6E-24 201.8 18.8 286 632-960 66-394 (399)
121 PLN03226 serine hydroxymethylt 99.8 2.9E-18 6.3E-23 201.2 28.2 302 637-972 85-418 (475)
122 PRK09331 Sep-tRNA:Cys-tRNA syn 99.8 7.9E-18 1.7E-22 194.6 31.4 284 207-529 59-377 (387)
123 cd00611 PSAT_like Phosphoserin 99.8 1.9E-18 4.2E-23 197.2 25.7 314 177-529 7-352 (355)
124 PRK05937 8-amino-7-oxononanoat 99.8 2.8E-18 6E-23 197.2 26.8 315 166-529 10-346 (370)
125 PRK00011 glyA serine hydroxyme 99.8 2.5E-18 5.3E-23 201.0 26.2 295 637-976 76-392 (416)
126 TIGR03246 arg_catab_astC succi 99.8 5.5E-18 1.2E-22 196.4 28.5 322 592-974 47-396 (397)
127 cd00616 AHBA_syn 3-amino-5-hyd 99.8 2.5E-18 5.5E-23 196.1 25.1 299 634-967 20-351 (352)
128 COG0436 Aspartate/tyrosine/aro 99.8 3.8E-18 8.3E-23 196.1 26.4 332 590-973 29-391 (393)
129 TIGR01364 serC_1 phosphoserine 99.8 5E-18 1.1E-22 192.7 26.8 282 211-529 37-344 (349)
130 PRK05355 3-phosphoserine/phosp 99.8 3.5E-18 7.6E-23 194.9 25.7 281 210-529 47-354 (360)
131 TIGR01821 5aminolev_synth 5-am 99.8 2.2E-18 4.9E-23 200.4 24.6 296 629-974 87-397 (402)
132 TIGR03811 tyr_de_CO2_Ent tyros 99.8 1.1E-17 2.4E-22 198.9 30.5 305 569-888 61-474 (608)
133 PRK04073 rocD ornithine--oxo-a 99.8 6.3E-18 1.4E-22 196.1 26.8 319 592-971 52-395 (396)
134 TIGR01821 5aminolev_synth 5-am 99.8 7.3E-18 1.6E-22 196.1 25.6 312 166-529 51-392 (402)
135 cd06454 KBL_like KBL_like; thi 99.8 5.5E-18 1.2E-22 193.0 23.7 289 630-969 44-347 (349)
136 TIGR01437 selA_rel uncharacter 99.8 1.4E-17 3E-22 190.5 26.9 296 632-970 45-362 (363)
137 PLN03227 serine palmitoyltrans 99.8 1.1E-17 2.4E-22 193.2 26.3 310 164-530 2-379 (392)
138 PRK09064 5-aminolevulinate syn 99.8 9.9E-18 2.1E-22 195.3 25.6 296 631-976 90-400 (407)
139 PRK13392 5-aminolevulinate syn 99.8 7.4E-18 1.6E-22 196.5 24.5 292 633-974 92-398 (410)
140 PRK00854 rocD ornithine--oxo-a 99.8 2.4E-17 5.2E-22 191.7 28.6 321 592-971 53-399 (401)
141 PRK07179 hypothetical protein; 99.8 9.6E-18 2.1E-22 195.3 25.2 270 211-529 99-394 (407)
142 PRK13393 5-aminolevulinate syn 99.8 1.2E-17 2.6E-22 194.4 25.8 294 631-974 89-397 (406)
143 PRK03244 argD acetylornithine 99.8 2.1E-17 4.6E-22 192.0 27.5 282 635-976 88-397 (398)
144 PLN02483 serine palmitoyltrans 99.8 4E-17 8.6E-22 193.3 29.8 315 165-529 105-462 (489)
145 PLN02483 serine palmitoyltrans 99.8 2.2E-17 4.8E-22 195.4 26.8 299 629-976 143-469 (489)
146 cd00609 AAT_like Aspartate ami 99.8 2.1E-17 4.6E-22 187.5 25.7 294 628-968 36-349 (350)
147 PLN02955 8-amino-7-oxononanoat 99.8 1.8E-17 4E-22 190.8 25.1 307 627-982 142-470 (476)
148 KOG1402 Ornithine aminotransfe 99.8 6.4E-18 1.4E-22 177.6 19.4 335 570-972 55-426 (427)
149 TIGR03372 putres_am_tran putre 99.8 3.2E-17 7E-22 190.7 26.6 319 591-970 86-441 (442)
150 cd06450 DOPA_deC_like DOPA dec 99.8 2.3E-17 4.9E-22 187.8 24.8 264 205-529 32-344 (345)
151 PRK05355 3-phosphoserine/phosp 99.8 6.4E-18 1.4E-22 192.8 19.9 300 629-973 45-358 (360)
152 PLN02721 threonine aldolase 99.8 2E-17 4.4E-22 188.7 24.0 292 634-972 42-351 (353)
153 cd06502 TA_like Low-specificit 99.8 5.7E-18 1.2E-22 192.1 19.3 286 634-968 34-336 (338)
154 PRK05964 adenosylmethionine--8 99.8 2.9E-17 6.4E-22 191.9 25.5 337 591-974 53-423 (423)
155 COG0156 BioF 7-keto-8-aminopel 99.8 1.9E-17 4.1E-22 186.6 22.9 292 626-969 78-386 (388)
156 KOG2862 Alanine-glyoxylate ami 99.8 1.3E-16 2.8E-21 166.9 27.2 324 170-529 20-378 (385)
157 TIGR01141 hisC histidinol-phos 99.8 1.1E-17 2.4E-22 190.6 21.1 279 635-967 57-345 (346)
158 PRK06108 aspartate aminotransf 99.8 7.4E-17 1.6E-21 186.3 28.0 301 627-972 60-381 (382)
159 PF01276 OKR_DC_1: Orn/Lys/Arg 99.8 1.5E-17 3.3E-22 188.5 21.1 266 211-518 66-416 (417)
160 PRK06939 2-amino-3-ketobutyrat 99.8 4E-17 8.7E-22 189.4 25.2 296 627-973 82-393 (397)
161 PRK13392 5-aminolevulinate syn 99.8 4E-17 8.6E-22 190.4 25.3 311 167-529 53-393 (410)
162 KOG2862 Alanine-glyoxylate ami 99.8 9.3E-17 2E-21 168.0 24.8 310 630-973 48-382 (385)
163 PRK07678 aminotransferase; Val 99.8 7.8E-17 1.7E-21 189.0 27.5 344 592-975 59-451 (451)
164 PRK13393 5-aminolevulinate syn 99.8 5.5E-17 1.2E-21 188.9 25.9 312 166-529 51-392 (406)
165 PRK09064 5-aminolevulinate syn 99.8 3.9E-17 8.4E-22 190.3 24.5 311 166-529 52-393 (407)
166 COG0076 GadB Glutamate decarbo 99.8 1.3E-16 2.8E-21 185.2 28.5 328 139-502 31-403 (460)
167 PRK11522 putrescine--2-oxoglut 99.8 4.9E-17 1.1E-21 190.5 25.1 324 591-975 93-453 (459)
168 TIGR01825 gly_Cac_T_rel pyrido 99.8 6.6E-17 1.4E-21 186.9 25.9 296 627-974 73-382 (385)
169 PLN03227 serine palmitoyltrans 99.8 7.1E-17 1.5E-21 186.5 26.1 298 633-974 44-383 (392)
170 PRK05958 8-amino-7-oxononanoat 99.8 5.4E-17 1.2E-21 187.4 25.2 290 629-970 81-384 (385)
171 cd06454 KBL_like KBL_like; thi 99.8 1.5E-16 3.3E-21 181.2 28.0 277 206-529 41-347 (349)
172 PRK12381 bifunctional succinyl 99.8 1.2E-16 2.5E-21 185.9 27.3 327 592-976 51-402 (406)
173 cd06452 SepCysS Sep-tRNA:Cys-t 99.8 5.3E-16 1.2E-20 177.8 32.1 279 211-529 44-358 (361)
174 PRK13034 serine hydroxymethylt 99.8 1.7E-16 3.6E-21 184.8 28.2 283 204-529 64-388 (416)
175 PRK15029 arginine decarboxylas 99.8 4.6E-17 1E-21 196.9 24.2 279 211-529 205-600 (755)
176 PRK03715 argD acetylornithine 99.8 1.2E-16 2.7E-21 184.5 26.6 287 634-974 80-394 (395)
177 TIGR01366 serC_3 phosphoserine 99.8 4.9E-17 1.1E-21 185.8 22.6 304 630-974 39-361 (361)
178 TIGR01885 Orn_aminotrans ornit 99.8 2.1E-16 4.6E-21 183.7 28.0 296 633-971 80-400 (401)
179 PLN02624 ornithine-delta-amino 99.8 2.3E-16 5E-21 186.2 28.6 325 592-973 87-444 (474)
180 TIGR00858 bioF 8-amino-7-oxono 99.7 1.4E-16 3E-21 182.1 25.3 284 632-967 61-359 (360)
181 PLN02822 serine palmitoyltrans 99.7 1.9E-16 4.2E-21 187.0 27.0 298 628-973 150-477 (481)
182 PRK08114 cystathionine beta-ly 99.7 2.7E-16 5.9E-21 179.6 27.1 211 215-468 66-284 (395)
183 PRK05957 aspartate aminotransf 99.7 2.7E-16 5.9E-21 182.0 27.4 302 627-972 64-384 (389)
184 PRK01278 argD acetylornithine 99.7 4E-16 8.6E-21 180.7 28.7 325 592-973 43-388 (389)
185 PRK06225 aspartate aminotransf 99.7 2.3E-16 5E-21 182.1 26.6 297 634-976 68-379 (380)
186 PRK04612 argD acetylornithine 99.7 3.8E-16 8.3E-21 180.9 28.3 326 591-977 51-407 (408)
187 PRK05764 aspartate aminotransf 99.7 6E-16 1.3E-20 179.5 29.8 308 628-975 68-393 (393)
188 PRK06943 adenosylmethionine--8 99.7 3.9E-16 8.4E-21 183.0 27.9 336 592-974 66-447 (453)
189 PRK05093 argD bifunctional N-s 99.7 5.8E-16 1.3E-20 180.1 28.7 294 634-975 84-402 (403)
190 PLN02760 4-aminobutyrate:pyruv 99.7 6.7E-16 1.4E-20 182.7 29.3 339 592-974 101-492 (504)
191 cd00609 AAT_like Aspartate ami 99.7 9.9E-16 2.1E-20 173.8 29.2 306 171-529 3-350 (350)
192 PRK07482 hypothetical protein; 99.7 7.7E-16 1.7E-20 181.0 28.9 344 591-974 61-455 (461)
193 PLN02822 serine palmitoyltrans 99.7 5.3E-16 1.2E-20 183.3 27.6 280 202-529 145-473 (481)
194 PRK06173 adenosylmethionine--8 99.7 6.1E-16 1.3E-20 180.1 27.2 332 592-974 56-426 (429)
195 PRK08117 4-aminobutyrate amino 99.7 7.5E-16 1.6E-20 180.6 28.0 331 591-975 54-431 (433)
196 PRK06541 hypothetical protein; 99.7 7.1E-16 1.5E-20 181.1 27.7 341 592-977 64-459 (460)
197 TIGR01437 selA_rel uncharacter 99.7 5.4E-16 1.2E-20 177.4 25.9 297 180-529 25-361 (363)
198 PRK00950 histidinol-phosphate 99.7 1.9E-16 4.1E-21 181.5 22.0 283 635-972 72-361 (361)
199 TIGR01364 serC_1 phosphoserine 99.7 2.1E-16 4.6E-21 179.4 21.9 299 629-973 34-348 (349)
200 PRK08064 cystathionine beta-ly 99.7 6.7E-16 1.5E-20 178.2 26.0 276 211-530 54-383 (390)
201 PRK06767 methionine gamma-lyas 99.7 8E-16 1.7E-20 177.5 26.6 273 214-528 64-384 (386)
202 PRK12403 putative aminotransfe 99.7 1.6E-15 3.5E-20 178.3 29.6 338 592-975 66-454 (460)
203 PRK07986 adenosylmethionine--8 99.7 7.4E-16 1.6E-20 179.2 26.4 329 592-972 55-422 (428)
204 PRK05965 hypothetical protein; 99.7 1.5E-15 3.2E-20 178.5 29.1 343 592-976 58-450 (459)
205 PRK07682 hypothetical protein; 99.7 5.2E-16 1.1E-20 179.1 24.7 302 628-975 57-378 (378)
206 COG0161 BioA Adenosylmethionin 99.7 2.8E-16 6.1E-21 177.5 21.7 355 569-975 39-445 (449)
207 PRK13360 omega amino acid--pyr 99.7 1.5E-15 3.3E-20 177.6 28.6 337 592-974 58-441 (442)
208 PRK06916 adenosylmethionine--8 99.7 9.2E-16 2E-20 180.3 26.6 346 592-978 68-460 (460)
209 PRK09221 beta alanine--pyruvat 99.7 1.8E-15 4E-20 177.1 29.0 341 592-974 61-444 (445)
210 PRK09082 methionine aminotrans 99.7 5.7E-16 1.2E-20 179.2 24.3 337 573-960 19-378 (386)
211 PLN00175 aminotransferase fami 99.7 1.5E-15 3.3E-20 176.9 28.1 334 590-972 55-412 (413)
212 PRK04013 argD acetylornithine/ 99.7 7.2E-16 1.6E-20 175.4 24.7 301 592-975 36-362 (364)
213 PRK07681 aspartate aminotransf 99.7 1.4E-15 3.1E-20 176.7 27.8 295 628-969 69-384 (399)
214 TIGR01324 cysta_beta_ly_B cyst 99.7 1.3E-15 2.8E-20 174.5 26.9 211 214-467 53-269 (377)
215 PLN02880 tyrosine decarboxylas 99.7 1.7E-15 3.6E-20 178.9 28.4 358 140-529 54-480 (490)
216 TIGR03576 pyridox_MJ0158 pyrid 99.7 2.7E-15 5.8E-20 170.2 28.9 312 151-530 8-344 (346)
217 cd00616 AHBA_syn 3-amino-5-hyd 99.7 1.4E-15 3E-20 173.6 26.7 280 212-528 19-352 (352)
218 PRK06939 2-amino-3-ketobutyrat 99.7 1.6E-15 3.5E-20 175.9 27.6 279 204-529 80-389 (397)
219 PRK05968 hypothetical protein; 99.7 8E-16 1.7E-20 177.5 24.6 274 213-529 65-386 (389)
220 PRK06207 aspartate aminotransf 99.7 2.1E-15 4.5E-20 175.5 28.3 305 628-976 78-405 (405)
221 PRK06062 hypothetical protein; 99.7 1.4E-15 3E-20 178.4 26.9 330 592-976 65-448 (451)
222 PLN02263 serine decarboxylase 99.7 8.7E-15 1.9E-19 168.6 32.8 283 208-530 130-440 (470)
223 cd00615 Orn_deC_like Ornithine 99.7 1.1E-16 2.4E-21 178.0 16.8 165 634-814 61-236 (294)
224 cd00614 CGS_like CGS_like: Cys 99.7 2.2E-15 4.7E-20 173.1 27.9 215 211-468 40-261 (369)
225 PRK06105 aminotransferase; Pro 99.7 1.8E-15 4E-20 177.8 27.8 356 571-976 45-452 (460)
226 PRK05630 adenosylmethionine--8 99.7 1.4E-15 3E-20 176.9 26.4 329 592-972 52-419 (422)
227 PRK05639 4-aminobutyrate amino 99.7 2.5E-15 5.4E-20 176.2 28.6 330 592-976 65-446 (457)
228 PRK09028 cystathionine beta-ly 99.7 2E-15 4.3E-20 173.0 27.1 212 214-468 64-281 (394)
229 PRK07324 transaminase; Validat 99.7 1.9E-15 4.2E-20 173.9 27.1 292 636-973 66-370 (373)
230 PLN02590 probable tyrosine dec 99.7 5.9E-15 1.3E-19 174.3 31.6 360 139-529 101-528 (539)
231 PRK08593 4-aminobutyrate amino 99.7 2.8E-15 6.1E-20 175.7 28.8 331 592-978 54-434 (445)
232 PRK08360 4-aminobutyrate amino 99.7 2.7E-15 5.9E-20 175.5 28.6 334 591-978 52-431 (443)
233 PRK09105 putative aminotransfe 99.7 1.4E-15 3E-20 174.8 25.5 280 634-971 80-368 (370)
234 PRK11658 UDP-4-amino-4-deoxy-L 99.7 1.8E-15 3.9E-20 174.3 26.4 309 634-971 35-377 (379)
235 PRK05387 histidinol-phosphate 99.7 1.1E-15 2.3E-20 174.7 24.3 282 635-972 63-352 (353)
236 KOG1360 5-aminolevulinate synt 99.7 3E-16 6.6E-21 168.4 18.1 316 167-529 178-520 (570)
237 PRK08361 aspartate aminotransf 99.7 1.9E-15 4.2E-20 175.1 26.5 301 628-973 70-390 (391)
238 PRK08742 adenosylmethionine--8 99.7 3.3E-15 7.1E-20 175.6 28.5 342 592-976 76-470 (472)
239 PLN03026 histidinol-phosphate 99.7 1.6E-15 3.4E-20 175.0 25.2 283 635-969 89-378 (380)
240 PRK07309 aromatic amino acid a 99.7 4.3E-15 9.4E-20 172.1 28.9 306 628-975 67-390 (391)
241 PRK12389 glutamate-1-semialdeh 99.7 2.3E-15 4.9E-20 175.9 26.7 319 592-973 65-427 (428)
242 PRK07030 adenosylmethionine--8 99.7 3E-15 6.5E-20 176.0 27.8 339 592-974 59-447 (466)
243 TIGR01329 cysta_beta_ly_E cyst 99.7 2.8E-15 6.1E-20 172.3 26.9 272 213-528 49-374 (378)
244 PRK13578 ornithine decarboxyla 99.7 5.8E-16 1.3E-20 185.6 21.9 283 211-529 174-561 (720)
245 PRK15029 arginine decarboxylas 99.7 1.9E-15 4E-20 183.1 26.2 304 634-972 207-603 (755)
246 PRK07495 4-aminobutyrate amino 99.7 4.2E-15 9.2E-20 173.1 28.2 330 592-976 52-424 (425)
247 TIGR03537 DapC succinyldiamino 99.7 2.4E-15 5.2E-20 171.7 25.7 289 628-960 36-342 (350)
248 PRK13580 serine hydroxymethylt 99.7 2E-15 4.4E-20 174.1 24.9 277 215-529 99-441 (493)
249 TIGR03588 PseC UDP-4-keto-6-de 99.7 3E-15 6.6E-20 172.8 26.6 306 634-970 31-379 (380)
250 PRK08064 cystathionine beta-ly 99.7 2.8E-15 6.1E-20 173.1 26.2 279 634-969 56-382 (390)
251 cd00611 PSAT_like Phosphoserin 99.7 5.8E-16 1.3E-20 176.9 20.2 296 629-970 41-353 (355)
252 PTZ00125 ornithine aminotransf 99.7 4.4E-15 9.6E-20 172.7 27.9 295 633-975 74-397 (400)
253 PRK06290 aspartate aminotransf 99.7 4.5E-15 9.8E-20 172.7 27.7 305 628-975 81-407 (410)
254 PRK07582 cystathionine gamma-l 99.7 5.6E-15 1.2E-19 169.2 28.1 272 214-529 54-365 (366)
255 TIGR01141 hisC histidinol-phos 99.7 6.4E-15 1.4E-19 167.8 28.5 299 171-528 24-346 (346)
256 PF01276 OKR_DC_1: Orn/Lys/Arg 99.7 7.5E-16 1.6E-20 174.7 20.5 286 634-956 68-416 (417)
257 PRK14807 histidinol-phosphate 99.7 3E-15 6.4E-20 171.0 25.6 281 635-970 62-349 (351)
258 COG0079 HisC Histidinol-phosph 99.7 2.5E-15 5.5E-20 169.9 24.6 287 634-973 59-354 (356)
259 TIGR03799 NOD_PanD_pyr putativ 99.7 1.2E-14 2.5E-19 172.1 30.9 298 204-526 122-518 (522)
260 PRK07505 hypothetical protein; 99.7 1.8E-15 3.8E-20 176.1 23.5 292 631-972 90-398 (402)
261 TIGR00858 bioF 8-amino-7-oxono 99.7 6.1E-15 1.3E-19 168.5 27.4 274 207-528 57-360 (360)
262 PRK05769 4-aminobutyrate amino 99.7 9.5E-15 2E-19 171.0 29.5 324 592-973 66-439 (441)
263 PRK13238 tnaA tryptophanase/L- 99.7 1.1E-14 2.3E-19 170.9 29.8 300 634-973 80-433 (460)
264 PRK06082 4-aminobutyrate amino 99.7 6.8E-15 1.5E-19 172.8 28.2 325 592-974 83-452 (459)
265 PRK07481 hypothetical protein; 99.7 9.8E-15 2.1E-19 171.3 29.5 340 592-975 54-447 (449)
266 PRK06058 4-aminobutyrate amino 99.7 5.2E-15 1.1E-19 173.6 27.2 327 592-974 68-443 (443)
267 cd06502 TA_like Low-specificit 99.7 2.5E-15 5.3E-20 170.5 23.6 273 213-529 34-337 (338)
268 PRK02731 histidinol-phosphate 99.7 2.2E-15 4.8E-20 173.1 23.5 284 635-971 70-364 (367)
269 PRK02936 argD acetylornithine 99.7 6.4E-15 1.4E-19 169.9 27.4 281 632-970 71-376 (377)
270 TIGR02407 ectoine_ectB diamino 99.7 8.7E-15 1.9E-19 170.2 28.7 339 571-972 32-411 (412)
271 TIGR01328 met_gam_lyase methio 99.7 8.2E-15 1.8E-19 169.1 28.0 214 214-468 62-281 (391)
272 cd00610 OAT_like Acetyl ornith 99.7 6.8E-15 1.5E-19 171.8 27.5 298 631-970 78-412 (413)
273 PRK09264 diaminobutyrate--2-ox 99.7 1.2E-14 2.7E-19 169.7 29.6 342 571-975 36-418 (425)
274 PRK07483 hypothetical protein; 99.7 1E-14 2.2E-19 170.7 28.9 345 591-976 41-440 (443)
275 PRK07480 putative aminotransfe 99.7 6E-15 1.3E-19 173.1 26.9 340 592-975 62-450 (456)
276 TIGR00474 selA seryl-tRNA(sec) 99.7 1.3E-14 2.8E-19 168.8 29.1 302 180-527 93-453 (454)
277 PLN02482 glutamate-1-semialdeh 99.7 3.5E-15 7.5E-20 175.1 24.5 323 592-973 111-473 (474)
278 PRK12414 putative aminotransfe 99.7 5.3E-15 1.2E-19 171.0 25.9 323 591-960 31-376 (384)
279 PLN00144 acetylornithine trans 99.7 1.1E-14 2.3E-19 167.9 28.1 321 592-974 27-381 (382)
280 PRK04635 histidinol-phosphate 99.7 2E-15 4.4E-20 172.5 22.1 280 635-969 63-351 (354)
281 TIGR00707 argD acetylornithine 99.7 6.1E-15 1.3E-19 170.2 26.1 290 633-970 70-378 (379)
282 PRK09792 4-aminobutyrate trans 99.7 1.1E-14 2.5E-19 169.7 28.4 329 592-972 52-420 (421)
283 cd00614 CGS_like CGS_like: Cys 99.7 3E-15 6.5E-20 171.9 23.2 209 634-888 42-256 (369)
284 PRK08912 hypothetical protein; 99.7 8.6E-15 1.9E-19 169.5 27.0 302 627-972 62-385 (387)
285 PRK01688 histidinol-phosphate 99.7 1.9E-15 4.1E-20 172.6 21.1 278 635-967 60-350 (351)
286 PRK08134 O-acetylhomoserine am 99.7 5.2E-15 1.1E-19 172.3 25.0 239 212-468 65-317 (433)
287 TIGR03540 DapC_direct LL-diami 99.7 1.2E-14 2.7E-19 167.9 28.1 288 628-960 67-375 (383)
288 PRK08153 histidinol-phosphate 99.7 5.9E-15 1.3E-19 169.7 25.2 292 635-977 70-369 (369)
289 PRK04311 selenocysteine syntha 99.7 1.7E-14 3.7E-19 168.3 29.1 306 180-529 98-460 (464)
290 PRK06938 diaminobutyrate--2-ox 99.7 1.6E-14 3.4E-19 169.8 29.0 330 591-975 74-462 (464)
291 PRK08133 O-succinylhomoserine 99.7 1.6E-14 3.4E-19 166.9 28.2 213 213-468 63-281 (390)
292 PRK01533 histidinol-phosphate 99.7 2.7E-15 5.9E-20 172.0 21.7 281 635-976 67-358 (366)
293 PRK06917 hypothetical protein; 99.7 2.3E-14 5E-19 167.9 29.8 340 592-974 43-438 (447)
294 PRK08114 cystathionine beta-ly 99.7 4.7E-15 1E-19 169.5 23.3 211 634-890 64-281 (395)
295 PLN00145 tyrosine/nicotianamin 99.7 2.1E-14 4.6E-19 168.1 29.4 312 628-976 94-427 (430)
296 PRK05958 8-amino-7-oxononanoat 99.7 3.1E-14 6.7E-19 164.5 30.3 277 205-529 78-383 (385)
297 PRK07550 hypothetical protein; 99.7 1.6E-14 3.4E-19 167.2 27.8 347 571-968 15-382 (386)
298 PRK06234 methionine gamma-lyas 99.7 1.1E-14 2.3E-19 168.8 26.3 274 214-528 67-396 (400)
299 TIGR00713 hemL glutamate-1-sem 99.7 6.7E-15 1.5E-19 172.4 24.8 294 635-974 91-423 (423)
300 TIGR00508 bioA adenosylmethion 99.7 1.2E-14 2.5E-19 169.7 26.7 296 635-972 91-425 (427)
301 PRK07504 O-succinylhomoserine 99.7 1.3E-14 2.8E-19 167.9 26.7 212 214-468 68-286 (398)
302 PRK09028 cystathionine beta-ly 99.7 1.1E-14 2.5E-19 166.8 25.7 216 635-896 64-287 (394)
303 PRK15407 lipopolysaccharide bi 99.7 1.4E-14 3E-19 169.2 26.9 378 568-972 2-435 (438)
304 PRK08960 hypothetical protein; 99.7 2E-14 4.3E-19 166.4 27.9 299 628-970 69-384 (387)
305 PRK13578 ornithine decarboxyla 99.7 7.2E-15 1.6E-19 176.2 24.6 308 634-972 176-564 (720)
306 PRK03158 histidinol-phosphate 99.7 9.5E-15 2.1E-19 167.4 24.6 280 635-970 67-358 (359)
307 PRK05942 aspartate aminotransf 99.7 1.9E-14 4.1E-19 167.0 27.4 281 627-950 72-373 (394)
308 PRK03321 putative aminotransfe 99.7 2.8E-15 6E-20 171.3 20.1 282 634-972 59-350 (352)
309 PLN02187 rooty/superroot1 99.7 3.3E-14 7.2E-19 167.7 29.6 362 571-978 47-443 (462)
310 PRK05968 hypothetical protein; 99.7 5E-15 1.1E-19 170.9 22.1 275 634-960 65-379 (389)
311 TIGR01325 O_suc_HS_sulf O-succ 99.7 1.5E-14 3.3E-19 166.6 26.0 213 213-468 56-274 (380)
312 PRK05967 cystathionine beta-ly 99.7 1.8E-14 3.9E-19 164.9 26.2 212 213-467 66-283 (395)
313 TIGR00709 dat 2,4-diaminobutyr 99.7 3.7E-14 7.9E-19 166.4 29.5 328 592-974 51-436 (442)
314 TIGR01825 gly_Cac_T_rel pyrido 99.7 1.4E-14 3.1E-19 167.4 25.8 277 205-529 72-377 (385)
315 PRK07777 aminotransferase; Val 99.7 1.8E-14 4E-19 166.7 26.6 297 628-969 61-382 (387)
316 PRK09276 LL-diaminopimelate am 99.7 3.1E-14 6.8E-19 164.7 28.5 288 628-960 69-377 (385)
317 PRK07036 hypothetical protein; 99.7 3.2E-14 6.9E-19 167.5 28.9 338 592-974 63-453 (466)
318 PRK07050 cystathionine beta-ly 99.7 1.1E-14 2.4E-19 168.1 24.4 212 214-468 68-286 (394)
319 PRK15399 lysine decarboxylase 99.7 1.3E-14 2.9E-19 173.8 25.7 272 211-529 195-555 (713)
320 PF01053 Cys_Met_Meta_PP: Cys/ 99.7 2.4E-14 5.1E-19 163.5 26.6 213 213-468 57-278 (386)
321 COG0001 HemL Glutamate-1-semia 99.7 2.8E-14 6.1E-19 159.5 26.4 295 634-976 95-431 (432)
322 cd00378 SHMT Serine-glycine hy 99.7 2.7E-14 5.9E-19 166.1 27.7 277 211-529 64-381 (402)
323 PRK06176 cystathionine gamma-s 99.7 1.9E-14 4.2E-19 165.3 26.0 212 213-468 52-270 (380)
324 PRK04870 histidinol-phosphate 99.7 1.4E-14 3.1E-19 165.8 24.8 281 635-970 66-355 (356)
325 PRK07504 O-succinylhomoserine 99.7 2.1E-14 4.5E-19 166.1 26.3 208 634-888 67-281 (398)
326 PRK10534 L-threonine aldolase; 99.7 2.6E-15 5.6E-20 170.2 18.4 283 634-972 36-332 (333)
327 PRK07337 aminotransferase; Val 99.6 2E-14 4.2E-19 166.6 26.0 302 628-969 67-385 (388)
328 TIGR01328 met_gam_lyase methio 99.6 2.8E-14 6.1E-19 164.7 27.1 211 634-888 61-276 (391)
329 PLN02509 cystathionine beta-ly 99.6 1.8E-14 3.8E-19 168.1 25.6 212 213-468 135-353 (464)
330 PRK15400 lysine decarboxylase 99.6 6.6E-15 1.4E-19 176.4 22.5 274 211-529 195-555 (714)
331 PF00155 Aminotran_1_2: Aminot 99.6 2.5E-15 5.4E-20 172.3 18.1 284 636-960 48-358 (363)
332 PLN02242 methionine gamma-lyas 99.6 1.1E-14 2.3E-19 169.2 23.5 220 634-896 78-305 (418)
333 PRK06767 methionine gamma-lyas 99.6 6.2E-15 1.3E-19 170.1 21.3 211 634-889 63-278 (386)
334 PRK00011 glyA serine hydroxyme 99.6 3.4E-14 7.5E-19 166.1 27.9 272 216-529 76-385 (416)
335 PLN02656 tyrosine transaminase 99.6 3.1E-14 6.6E-19 166.0 27.2 306 628-974 73-404 (409)
336 PRK06777 4-aminobutyrate amino 99.6 3.1E-14 6.8E-19 166.0 27.2 323 592-971 52-419 (421)
337 PRK13355 bifunctional HTH-doma 99.6 1.8E-14 3.9E-19 172.7 25.7 310 627-974 184-515 (517)
338 TIGR03531 selenium_SpcS O-phos 99.6 8.6E-14 1.9E-18 160.7 30.0 342 139-529 28-442 (444)
339 COG3844 Kynureninase [Amino ac 99.6 2.5E-14 5.5E-19 151.0 23.0 310 629-975 73-404 (407)
340 PRK08068 transaminase; Reviewe 99.6 2.9E-14 6.3E-19 165.2 26.2 288 628-960 70-378 (389)
341 TIGR01329 cysta_beta_ly_E cyst 99.6 1.4E-14 3.1E-19 166.5 23.4 208 634-888 49-262 (378)
342 KOG1404 Alanine-glyoxylate ami 99.6 2.8E-15 6.1E-20 161.9 16.2 337 569-960 45-427 (442)
343 PRK07810 O-succinylhomoserine 99.6 3.1E-14 6.8E-19 164.7 26.2 213 213-468 72-291 (403)
344 COG0626 MetC Cystathionine bet 99.6 5.7E-14 1.2E-18 158.3 27.4 214 213-468 65-286 (396)
345 PRK09147 succinyldiaminopimela 99.6 4.6E-14 1E-18 163.9 27.8 294 628-971 65-394 (396)
346 TIGR03576 pyridox_MJ0158 pyrid 99.6 1.3E-14 2.8E-19 164.6 22.5 280 629-970 51-344 (346)
347 PRK08861 cystathionine gamma-s 99.6 8E-14 1.7E-18 160.0 29.0 212 214-468 56-274 (388)
348 PRK08249 cystathionine gamma-s 99.6 7.2E-14 1.6E-18 161.5 28.8 214 212-468 65-284 (398)
349 PRK08861 cystathionine gamma-s 99.6 1.5E-14 3.2E-19 166.1 22.7 208 634-890 55-271 (388)
350 TIGR02379 ECA_wecE TDP-4-keto- 99.6 4.5E-14 9.8E-19 162.1 26.8 308 634-971 33-375 (376)
351 PRK07046 aminotransferase; Val 99.6 1.8E-14 3.9E-19 168.8 23.9 329 592-975 87-452 (453)
352 PRK08248 O-acetylhomoserine am 99.6 6.5E-14 1.4E-18 163.2 28.2 142 214-361 67-214 (431)
353 PRK07812 O-acetylhomoserine am 99.6 3.4E-14 7.3E-19 165.3 25.8 230 215-468 73-321 (436)
354 TIGR01264 tyr_amTase_E tyrosin 99.6 1E-13 2.2E-18 161.3 29.8 298 636-973 77-399 (401)
355 PRK07582 cystathionine gamma-l 99.6 3E-14 6.5E-19 163.2 24.9 269 634-960 53-358 (366)
356 PRK06107 aspartate aminotransf 99.6 3.6E-14 7.9E-19 165.0 25.9 307 628-974 70-401 (402)
357 PRK00615 glutamate-1-semialdeh 99.6 2.3E-14 5E-19 166.8 24.1 322 592-974 65-429 (433)
358 PRK03317 histidinol-phosphate 99.6 2.3E-14 4.9E-19 164.8 23.9 288 629-972 66-363 (368)
359 KOG2467 Glycine/serine hydroxy 99.6 1.3E-14 2.7E-19 154.9 19.7 347 579-970 45-423 (477)
360 PRK06931 diaminobutyrate--2-ox 99.6 6.7E-14 1.5E-18 164.4 27.8 328 592-974 70-455 (459)
361 PRK07503 methionine gamma-lyas 99.6 2.8E-14 6E-19 165.4 24.2 212 634-889 67-283 (403)
362 PRK05613 O-acetylhomoserine am 99.6 6.3E-14 1.4E-18 163.1 27.2 144 213-362 71-220 (437)
363 PTZ00433 tyrosine aminotransfe 99.6 7.9E-14 1.7E-18 162.7 28.2 307 628-975 75-410 (412)
364 PRK07683 aminotransferase A; V 99.6 7.2E-14 1.6E-18 161.7 27.6 299 628-972 65-382 (387)
365 PRK07811 cystathionine gamma-s 99.6 1.2E-13 2.7E-18 159.3 29.4 213 213-468 63-282 (388)
366 PRK08574 cystathionine gamma-s 99.6 9.4E-14 2E-18 159.9 28.1 212 213-468 55-273 (385)
367 KOG0257 Kynurenine aminotransf 99.6 1.5E-14 3.3E-19 158.6 20.1 293 572-910 18-344 (420)
368 TIGR01365 serC_2 phosphoserine 99.6 4.3E-14 9.3E-19 160.7 24.7 294 210-528 38-368 (374)
369 PRK02627 acetylornithine amino 99.6 1.2E-13 2.5E-18 160.5 28.7 294 632-973 81-394 (396)
370 PRK06348 aspartate aminotransf 99.6 1.1E-13 2.4E-18 160.0 28.4 297 628-968 66-380 (384)
371 PRK06702 O-acetylhomoserine am 99.6 4.3E-14 9.3E-19 163.5 24.7 295 213-530 63-425 (432)
372 PRK09148 aminotransferase; Val 99.6 9.4E-14 2E-18 161.7 27.5 304 628-973 68-390 (405)
373 PLN02242 methionine gamma-lyas 99.6 8.1E-14 1.8E-18 161.8 26.8 218 212-470 77-302 (418)
374 PRK07503 methionine gamma-lyas 99.6 1.3E-13 2.9E-18 159.7 28.3 215 213-468 67-287 (403)
375 TIGR00700 GABAtrnsam 4-aminobu 99.6 1.4E-13 3.1E-18 160.7 28.7 325 592-972 45-419 (420)
376 COG2873 MET17 O-acetylhomoseri 99.6 9.6E-14 2.1E-18 149.5 24.7 233 216-468 67-315 (426)
377 PRK08574 cystathionine gamma-s 99.6 4.9E-14 1.1E-18 162.3 24.2 208 634-888 55-268 (385)
378 PRK11706 TDP-4-oxo-6-deoxy-D-g 99.6 8.7E-14 1.9E-18 160.3 26.1 306 634-971 33-374 (375)
379 PRK07366 succinyldiaminopimela 99.6 6.4E-14 1.4E-18 162.3 25.2 297 628-969 68-386 (388)
380 PRK00062 glutamate-1-semialdeh 99.6 3.4E-14 7.3E-19 166.2 22.9 292 635-974 93-425 (426)
381 PRK08056 threonine-phosphate d 99.6 5.1E-14 1.1E-18 161.2 23.9 280 635-970 58-352 (356)
382 PRK07568 aspartate aminotransf 99.6 1.5E-13 3.3E-18 159.6 28.2 294 636-976 70-395 (397)
383 PRK07269 cystathionine gamma-s 99.6 1.4E-13 3E-18 157.3 27.1 228 213-484 56-289 (364)
384 PRK15400 lysine decarboxylase 99.6 4.7E-14 1E-18 169.2 24.1 296 634-970 197-556 (714)
385 PRK07671 cystathionine beta-ly 99.6 1.1E-13 2.3E-18 159.2 26.2 212 213-468 52-270 (377)
386 PRK07812 O-acetylhomoserine am 99.6 3.4E-13 7.4E-18 156.9 30.4 144 634-796 71-219 (436)
387 PF01041 DegT_DnrJ_EryC1: DegT 99.6 4.6E-14 1E-18 161.8 23.0 300 633-967 26-362 (363)
388 COG0399 WecE Predicted pyridox 99.6 1.2E-13 2.6E-18 154.9 25.5 303 634-973 36-373 (374)
389 PRK08363 alanine aminotransfer 99.6 1.5E-13 3.3E-18 159.7 27.4 306 628-973 70-394 (398)
390 PRK08247 cystathionine gamma-s 99.6 1.4E-13 3E-18 157.8 26.6 228 213-484 54-289 (366)
391 PLN02721 threonine aldolase 99.6 8E-14 1.7E-18 159.1 24.4 273 213-529 42-348 (353)
392 PRK08248 O-acetylhomoserine am 99.6 1.8E-13 4E-18 159.4 27.7 143 634-796 66-213 (431)
393 PRK07050 cystathionine beta-ly 99.6 3.6E-14 7.7E-19 163.9 21.5 210 634-889 67-282 (394)
394 PRK08249 cystathionine gamma-s 99.6 8.7E-14 1.9E-18 160.8 24.7 209 634-888 66-279 (398)
395 TIGR01265 tyr_nico_aTase tyros 99.6 3.3E-13 7.2E-18 157.1 29.5 298 636-973 77-401 (403)
396 PRK06148 hypothetical protein; 99.6 1E-13 2.2E-18 176.8 27.1 341 571-974 621-1011(1013)
397 PRK15481 transcriptional regul 99.6 1.1E-13 2.5E-18 162.4 25.7 252 678-972 163-430 (431)
398 PLN03226 serine hydroxymethylt 99.6 1.9E-13 4E-18 160.8 27.4 282 217-529 86-415 (475)
399 PRK07908 hypothetical protein; 99.6 1.1E-13 2.3E-18 158.1 24.6 277 635-971 61-345 (349)
400 TIGR00699 GABAtrns_euk 4-amino 99.6 1.1E-13 2.4E-18 161.5 25.1 325 592-970 70-463 (464)
401 TIGR01324 cysta_beta_ly_B cyst 99.6 2.2E-14 4.8E-19 164.4 19.0 210 634-889 52-266 (377)
402 PRK06084 O-acetylhomoserine am 99.6 1.1E-13 2.5E-18 161.0 25.1 235 214-468 61-312 (425)
403 PRK05994 O-acetylhomoserine am 99.6 3.5E-13 7.6E-18 157.2 29.2 154 634-810 65-223 (427)
404 PRK08776 cystathionine gamma-s 99.6 1.8E-13 3.9E-18 158.5 26.6 210 634-889 62-277 (405)
405 PRK05166 histidinol-phosphate 99.6 1.7E-13 3.6E-18 157.8 26.2 281 636-971 75-369 (371)
406 PRK08297 L-lysine aminotransfe 99.6 9.6E-14 2.1E-18 162.5 24.4 343 572-974 43-442 (443)
407 PRK05994 O-acetylhomoserine am 99.6 1.8E-13 3.9E-18 159.6 26.5 152 214-374 66-223 (427)
408 PRK08636 aspartate aminotransf 99.6 3.6E-13 7.8E-18 156.8 29.0 308 627-975 70-402 (403)
409 PRK07811 cystathionine gamma-s 99.6 9.1E-14 2E-18 160.4 23.6 207 634-889 63-278 (388)
410 PRK08776 cystathionine gamma-s 99.6 3.1E-13 6.6E-18 156.5 28.0 212 214-468 63-281 (405)
411 PRK08134 O-acetylhomoserine am 99.6 7.4E-14 1.6E-18 162.6 22.9 143 634-796 66-213 (433)
412 PRK05613 O-acetylhomoserine am 99.6 3.6E-14 7.7E-19 165.1 20.2 144 634-796 71-219 (437)
413 COG2008 GLY1 Threonine aldolas 99.6 3.1E-14 6.8E-19 154.6 18.0 289 632-970 35-340 (342)
414 PRK06149 hypothetical protein; 99.6 1.8E-13 4E-18 174.4 28.1 324 593-973 596-970 (972)
415 PRK05967 cystathionine beta-ly 99.6 1.3E-13 2.8E-18 158.0 24.0 211 634-890 66-281 (395)
416 TIGR03251 LAT_fam L-lysine 6-t 99.6 8E-14 1.7E-18 163.0 22.8 340 572-969 36-430 (431)
417 PRK02731 histidinol-phosphate 99.6 5.6E-13 1.2E-17 153.2 29.5 265 214-529 70-362 (367)
418 PRK09265 aminotransferase AlaT 99.6 2.4E-13 5.2E-18 158.3 26.7 296 636-974 76-402 (404)
419 PRK04311 selenocysteine syntha 99.6 1.4E-13 3.1E-18 160.6 24.5 290 634-971 129-462 (464)
420 PRK06460 hypothetical protein; 99.6 5.6E-13 1.2E-17 153.2 29.2 214 211-467 45-264 (376)
421 PRK04781 histidinol-phosphate 99.6 2.6E-13 5.6E-18 155.7 26.3 283 635-970 62-360 (364)
422 PRK08045 cystathionine gamma-s 99.6 1.5E-13 3.3E-18 158.2 24.2 210 634-889 54-269 (386)
423 PRK11658 UDP-4-amino-4-deoxy-L 99.6 2.2E-13 4.7E-18 157.1 25.6 288 213-529 35-375 (379)
424 TIGR03538 DapC_gpp succinyldia 99.6 2.9E-13 6.3E-18 157.1 26.8 293 627-969 63-391 (393)
425 PRK06836 aspartate aminotransf 99.6 3E-13 6.6E-18 156.9 27.0 299 628-975 73-393 (394)
426 PRK06176 cystathionine gamma-s 99.6 1.3E-13 2.8E-18 158.5 23.5 209 634-889 52-266 (380)
427 COG1103 Archaea-specific pyrid 99.6 1.8E-13 3.9E-18 140.8 21.6 304 634-973 63-380 (382)
428 PRK04260 acetylornithine amino 99.6 7E-13 1.5E-17 152.9 29.4 280 637-970 71-374 (375)
429 PRK08045 cystathionine gamma-s 99.6 4.9E-13 1.1E-17 154.0 27.8 273 214-529 55-382 (386)
430 TIGR01140 L_thr_O3P_dcar L-thr 99.6 2.7E-13 5.9E-18 153.5 25.4 263 635-960 50-324 (330)
431 PLN00143 tyrosine/nicotianamin 99.6 7.4E-13 1.6E-17 154.4 29.5 310 628-974 74-405 (409)
432 PRK08133 O-succinylhomoserine 99.6 5.5E-14 1.2E-18 162.4 19.6 209 634-889 63-277 (390)
433 PRK07810 O-succinylhomoserine 99.6 5.6E-14 1.2E-18 162.6 19.6 210 634-889 72-287 (403)
434 PF00282 Pyridoxal_deC: Pyrido 99.6 2.5E-13 5.4E-18 155.3 24.4 322 131-482 1-372 (373)
435 TIGR01325 O_suc_HS_sulf O-succ 99.6 7.4E-14 1.6E-18 160.9 20.1 208 634-888 56-269 (380)
436 COG1982 LdcC Arginine/lysine/o 99.6 1.3E-13 2.8E-18 159.0 21.7 280 211-529 70-404 (557)
437 PRK06234 methionine gamma-lyas 99.6 7.8E-14 1.7E-18 161.6 20.1 212 634-889 66-284 (400)
438 TIGR02080 O_succ_thio_ly O-suc 99.6 8.3E-13 1.8E-17 152.0 28.4 212 214-468 54-272 (382)
439 PRK15399 lysine decarboxylase 99.6 4.4E-13 9.5E-18 160.9 26.9 297 634-971 197-557 (713)
440 PLN02271 serine hydroxymethylt 99.6 1.8E-13 4E-18 158.3 22.7 292 215-528 198-535 (586)
441 PRK05939 hypothetical protein; 99.6 7.5E-13 1.6E-17 152.9 27.7 227 213-467 49-287 (397)
442 TIGR00474 selA seryl-tRNA(sec) 99.6 2.7E-13 5.8E-18 157.9 24.1 165 634-820 124-309 (454)
443 PRK08175 aminotransferase; Val 99.6 8E-13 1.7E-17 153.5 27.9 303 627-972 66-388 (395)
444 KOG1360 5-aminolevulinate synt 99.6 1.1E-13 2.4E-18 149.0 18.2 287 633-976 217-527 (570)
445 cd01494 AAT_I Aspartate aminot 99.6 1E-13 2.3E-18 139.9 17.4 161 634-812 2-170 (170)
446 PRK05939 hypothetical protein; 99.6 2.2E-13 4.8E-18 157.3 22.2 222 634-889 49-284 (397)
447 cd00615 Orn_deC_like Ornithine 99.6 2.9E-14 6.4E-19 158.6 14.0 212 211-463 59-294 (294)
448 COG1982 LdcC Arginine/lysine/o 99.6 2.6E-13 5.6E-18 156.5 22.0 294 634-960 72-397 (557)
449 PRK06434 cystathionine gamma-l 99.6 8E-13 1.7E-17 151.4 26.0 211 213-468 66-282 (384)
450 PRK06084 O-acetylhomoserine am 99.5 1.9E-12 4.1E-17 150.8 29.3 142 635-796 61-207 (425)
451 PRK02610 histidinol-phosphate 99.5 7.9E-13 1.7E-17 152.4 25.9 286 636-974 70-372 (374)
452 PRK06918 4-aminobutyrate amino 99.5 1.5E-12 3.3E-17 153.4 28.7 334 592-974 66-444 (451)
453 COG2873 MET17 O-acetylhomoseri 99.5 8.6E-13 1.9E-17 142.3 23.8 223 636-892 66-314 (426)
454 TIGR01365 serC_2 phosphoserine 99.5 2.9E-13 6.3E-18 153.9 21.5 305 628-970 35-370 (374)
455 PLN02376 1-aminocyclopropane-1 99.5 9E-13 1.9E-17 156.5 26.6 307 627-975 93-440 (496)
456 TIGR03588 PseC UDP-4-keto-6-de 99.5 7E-13 1.5E-17 153.2 24.9 290 213-529 31-378 (380)
457 TIGR01326 OAH_OAS_sulfhy OAH/O 99.5 2E-12 4.4E-17 150.7 28.9 156 634-813 59-219 (418)
458 PLN02509 cystathionine beta-ly 99.5 1.5E-13 3.2E-18 160.5 19.3 217 633-896 134-359 (464)
459 PRK05387 histidinol-phosphate 99.5 2.8E-12 6.1E-17 146.6 29.4 269 214-529 63-349 (353)
460 KOG1359 Glycine C-acetyltransf 99.5 1.8E-13 3.9E-18 142.2 17.2 293 626-974 106-413 (417)
461 PRK06358 threonine-phosphate d 99.5 7.9E-13 1.7E-17 151.2 24.4 280 635-971 57-353 (354)
462 TIGR01326 OAH_OAS_sulfhy OAH/O 99.5 2.4E-12 5.2E-17 150.1 28.8 142 214-361 60-207 (418)
463 PRK05839 hypothetical protein; 99.5 7.8E-13 1.7E-17 152.4 24.1 289 628-972 60-373 (374)
464 PTZ00377 alanine aminotransfer 99.5 1.9E-12 4.1E-17 154.0 28.2 311 628-974 115-476 (481)
465 KOG0259 Tyrosine aminotransfer 99.5 1.7E-12 3.7E-17 140.0 24.4 365 570-975 41-435 (447)
466 PRK06425 histidinol-phosphate 99.5 9.1E-13 2E-17 149.3 23.8 275 635-971 43-331 (332)
467 PRK14809 histidinol-phosphate 99.5 8.5E-13 1.8E-17 151.1 23.7 277 635-971 68-355 (357)
468 PLN02450 1-aminocyclopropane-1 99.5 2.2E-12 4.8E-17 152.5 27.8 309 628-975 86-432 (468)
469 KOG1383 Glutamate decarboxylas 99.5 1.7E-12 3.7E-17 143.7 24.8 352 139-529 54-442 (491)
470 PRK06702 O-acetylhomoserine am 99.5 7.9E-13 1.7E-17 153.1 23.3 144 634-796 63-211 (432)
471 PRK08247 cystathionine gamma-s 99.5 1.6E-12 3.5E-17 149.1 25.5 211 634-891 54-270 (366)
472 KOG0053 Cystathionine beta-lya 99.5 8.6E-13 1.9E-17 146.7 22.2 161 214-383 80-247 (409)
473 PRK06225 aspartate aminotransf 99.5 1E-11 2.2E-16 143.4 31.7 306 171-529 33-372 (380)
474 PLN02452 phosphoserine transam 99.5 1.9E-12 4.1E-17 147.3 24.7 281 210-529 51-359 (365)
475 PRK07269 cystathionine gamma-s 99.5 1.3E-12 2.8E-17 149.3 23.2 207 634-889 56-268 (364)
476 PRK09105 putative aminotransfe 99.5 7.4E-12 1.6E-16 144.0 29.6 297 170-528 47-365 (370)
477 PRK08088 4-aminobutyrate amino 99.5 4.8E-12 1E-16 148.2 28.5 295 636-975 88-425 (425)
478 cd00617 Tnase_like Tryptophana 99.5 2.3E-12 4.9E-17 149.4 25.2 301 634-973 55-408 (431)
479 PTZ00376 aspartate aminotransf 99.5 7E-13 1.5E-17 154.4 21.1 300 627-972 71-402 (404)
480 PRK07671 cystathionine beta-ly 99.5 4.6E-13 1E-17 153.9 19.0 205 634-888 52-265 (377)
481 PRK06460 hypothetical protein; 99.5 7.5E-13 1.6E-17 152.2 20.4 210 634-889 47-261 (376)
482 PRK07590 L,L-diaminopimelate a 99.5 3.3E-12 7.1E-17 149.1 25.9 355 570-969 17-407 (409)
483 PRK07865 N-succinyldiaminopime 99.5 2.4E-12 5.1E-17 147.9 24.4 281 628-967 62-362 (364)
484 PRK05957 aspartate aminotransf 99.5 1.3E-11 2.8E-16 143.0 30.7 307 170-528 31-380 (389)
485 PLN02607 1-aminocyclopropane-1 99.5 5.6E-12 1.2E-16 148.0 27.8 307 627-975 94-439 (447)
486 PRK06959 putative threonine-ph 99.5 2.4E-12 5.2E-17 146.2 23.9 271 635-976 56-336 (339)
487 COG1103 Archaea-specific pyrid 99.5 1.6E-12 3.5E-17 133.8 19.7 277 211-529 61-376 (382)
488 PRK09275 aspartate aminotransf 99.5 1.8E-12 4E-17 152.8 23.0 328 628-975 134-519 (527)
489 PRK07908 hypothetical protein; 99.5 9.4E-12 2E-16 142.1 27.8 298 172-529 28-343 (349)
490 PRK05664 threonine-phosphate d 99.5 4.4E-12 9.5E-17 143.6 24.6 269 635-972 52-327 (330)
491 TIGR03539 DapC_actino succinyl 99.5 3.7E-12 8.1E-17 145.8 24.3 277 627-960 55-351 (357)
492 PRK03158 histidinol-phosphate 99.5 1.4E-11 3.1E-16 141.2 28.7 267 213-529 66-357 (359)
493 PRK03967 histidinol-phosphate 99.5 2.4E-12 5.3E-17 146.1 22.2 271 635-972 58-333 (337)
494 PF01041 DegT_DnrJ_EryC1: DegT 99.5 4.6E-12 9.9E-17 145.4 24.5 282 211-528 25-363 (363)
495 PRK07505 hypothetical protein; 99.5 2.1E-11 4.6E-16 141.9 30.4 318 164-529 45-395 (402)
496 PRK00854 rocD ornithine--oxo-a 99.5 1.2E-11 2.5E-16 144.1 28.0 277 211-529 83-397 (401)
497 PF00155 Aminotran_1_2: Aminot 99.5 5.3E-12 1.1E-16 144.8 24.8 269 215-527 48-363 (363)
498 PRK06108 aspartate aminotransf 99.5 2.1E-11 4.5E-16 140.9 29.7 277 208-528 62-377 (382)
499 TIGR03801 asp_4_decarbox aspar 99.5 4.2E-12 9E-17 149.7 23.6 327 628-974 128-517 (521)
500 PF01053 Cys_Met_Meta_PP: Cys/ 99.5 5.7E-12 1.2E-16 144.0 23.9 210 634-890 57-275 (386)
No 1
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-174 Score=1429.69 Aligned_cols=881 Identities=69% Similarity=1.112 Sum_probs=829.7
Q ss_pred cccccccccCCCCccccccCCCCCHHHHHHHHHHhCCCCHHHhhhhcCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHHHh
Q 001989 83 QTRGISVEALKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQKLA 161 (985)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~l~ 161 (985)
.++++...+++|.|+|..|||++++.|+++||+++|++++|+|+++.||++| +++++.+| ++++|.|+++|++++|
T Consensus 37 ~~~~~~~~~~~~~d~F~~RHigp~~~dq~~ml~tlG~~dl~~l~~~~VP~~Ir~~~~l~~~---~~~~E~eml~~l~~ia 113 (1001)
T KOG2040|consen 37 ATRSQSERIFPPLDTFPRRHIGPSPTDQQQMLDTLGYKDLDELIEKTVPKSIRLKRPLKMD---KPLCESEMLQHLEDIA 113 (1001)
T ss_pred hhcchhhhccCcccccccccCCCCchHHHHHHHhcChhhHHHHHHhhcchhhcccchhcCC---CCcCHHHHHHHHHHHH
Confidence 4566667789999999999999999999999999999999999999999999 88899997 8999999999999999
Q ss_pred cCCCccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHH
Q 001989 162 SMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAA 241 (985)
Q Consensus 162 ~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ 241 (985)
+||+.+.+|+|+|||++.+|++|.|+++++++|||.|||||||+|||+|+.+.+||+++++|||++.+|+|+.|.||+++
T Consensus 114 ~kNk~~ksfIGmGYyn~~vP~~I~RNilenp~W~TqYTPYQ~EIsQGRLEsllNyQTmi~dlTGL~~aNASLLDEgTAaa 193 (1001)
T KOG2040|consen 114 SKNKIWKSFIGMGYYNTHVPAVILRNILENPGWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMANASLLDEGTAAA 193 (1001)
T ss_pred hhhhHHHHhhccccccccCcHHHHHHhhhCCcceeccCCCchhhhhhhHHHHhhhHHhhhhccCCcccchhhhccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchhhhccCCCEeEEEEEcCCCCeeeccHHHHHHH
Q 001989 242 EAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDYKSGDVCGVLVQYPGTEGEVLDYGDFIKN 321 (985)
Q Consensus 242 ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~~l~~~t~~V~v~~pn~~G~v~di~~I~~~ 321 (985)
||+.|+.+.. +++|++++..+||+++.+++++++.+|++++..++.+.....+++++|+||+|++.|.+.|..++++.
T Consensus 194 EAm~l~~~~~--krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~~~~~~~~s~~~v~gvlvQYP~t~G~i~d~~el~~~ 271 (1001)
T KOG2040|consen 194 EAMALCNRIN--KRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVSDIKEADYSSKDVSGVLVQYPDTEGSVLDFDELVEL 271 (1001)
T ss_pred HHHHHHHhhc--ccceEEecCCCCcchhhhhhccccccceeEEecCHHHhhccccceeEEEEEcCCCCCcccCHHHHHHH
Confidence 9999998876 77889999999999999999999999999888776554434567999999999999999999999999
Q ss_pred HHhCCcEEEEEecCccccCCCCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCccee
Q 001989 322 AHANGVKVVMATDLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALR 401 (985)
Q Consensus 322 a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~ 401 (985)
+|+.|.++++++|++++.++++|++|||||++||+|.||.|+|+||||+|||+|++++.|.||||++|.|+|..|+++|+
T Consensus 272 a~~~~s~vv~atDLLaLtiLrpPgefGaDIavGSsQRFGVPlGYGGPHAaFfAv~~~l~R~mPGRiiGvtkD~~gk~a~R 351 (1001)
T KOG2040|consen 272 AHANGSLVVMATDLLALTILRPPGEFGADIAVGSSQRFGVPLGYGGPHAAFFAVSESLVRMMPGRIIGVTKDALGKEAYR 351 (1001)
T ss_pred hhccCceEEEeehhhHHHccCChhhcCceeeeccccccCccccCCCchHHHHHHHHHHHhhCCCceEeeeecccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEe
Q 001989 402 VAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVK 481 (985)
Q Consensus 402 l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~ 481 (985)
|.||||||||||+||||||||+|+|.|.++++|+.|+|++|+++|++|++..+.+|...|+..| .++.+.++|+++.|.
T Consensus 352 LALQTREQHIrRDKATSNICTAQALLANmaAmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~ag-hel~~k~fFDTLkI~ 430 (1001)
T KOG2040|consen 352 LALQTREQHIRRDKATSNICTAQALLANMAAMYAIYHGPHGLKEIARRVHNLTLILAEGLKNAG-HELQHKPFFDTLKIR 430 (1001)
T ss_pred HHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhhcc-hhhccccccceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999998 898888999999999
Q ss_pred cCC-HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhCCCCCCCCHHhhhhhh-----hccCCCCccCC
Q 001989 482 CAD-AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAEEV-----ETAIPSGLTRE 555 (985)
Q Consensus 482 ~~~-~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~~~~~~~~~~~l~~~~-----~~~ip~~~~~~ 555 (985)
+.. ++++.++..+++|+++.++++.+.+++.|+.+++|+|.|+..+.++ |..++..+. ....|+.++|+
T Consensus 431 ~~~s~~~~l~rA~~~~iNlr~~ed~tigvslDETv~~~DvddLl~vf~~~-----ss~~~~~E~~~~e~~~~~~s~f~Rt 505 (1001)
T KOG2040|consen 431 CGCSAEEVLDRAAKRQINLRLVEDGTIGVSLDETVTEKDVDDLLWVFNEE-----SSVELVAESMGEECNGIPPSVFKRT 505 (1001)
T ss_pred ecCcHHHHHHHHHhhcCceEEeecCceEEeecccccHHHHHHHHHHHccC-----ChHHHHHHhhhhhccCCCCcccccC
Confidence 987 8999999999999999999999999999999999999999999976 444443221 23578999999
Q ss_pred CCCCCCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHH
Q 001989 556 SPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFN 635 (985)
Q Consensus 556 ~~~~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~ 635 (985)
++|+++|||+.++||++++|||++|.+||+++.++|||||||||++|+..|++|+.|++|+|+|||+|.|+.||+++++.
T Consensus 506 s~~L~hpVFn~yhSEt~lvRYm~kLenKDlSLvhSMiPLGSCTMKLNsttEmmPiTwp~fanIHPF~P~eQaqGY~~lf~ 585 (1001)
T KOG2040|consen 506 SPYLTHPVFNSYHSETELVRYMKKLENKDLSLVHSMIPLGSCTMKLNSTTEMMPITWPEFANIHPFAPVEQAQGYQQLFT 585 (1001)
T ss_pred CccccchhhhhcccHHHHHHHHHHhhccchhhhhhcccccceeeeccccceeccccchhhccCCCCCchHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCCC
Q 001989 636 NLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNI 715 (985)
Q Consensus 636 e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~i 715 (985)
++++++|+++|+|..++++|||++|+++++++||+|+.++|+..++.+++|.++||+||+++++.|++|+.|.++.+|.+
T Consensus 586 ~Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA~MagmkvvpV~~~~~G~i 665 (1001)
T KOG2040|consen 586 ELEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMAGMKVVPVGCDANGNI 665 (1001)
T ss_pred HHHHHhheeecccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChhhHHhcCCEEEEeeccCCCCc
Confidence 99999999999999999999999999999999999999999878889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeCCcccc
Q 001989 716 NIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTF 795 (985)
Q Consensus 716 D~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l 795 (985)
|+.+|+++.++|+++.+++||+||+++|+++++|+++++++|++|..|+.|||+++++.|+++||++|+|+++.++||||
T Consensus 666 d~~dLk~kaekh~~~Laa~MvTYPST~GvfE~~i~d~cd~iHehGGQVYlDGANMNAqVGlc~pGd~GaDV~HLNLHKTF 745 (1001)
T KOG2040|consen 666 DMVDLKAKAEKHKDNLAALMVTYPSTHGVFEEGIDDICDIIHEHGGQVYLDGANMNAQVGLCRPGDIGADVCHLNLHKTF 745 (1001)
T ss_pred cHHHHHHHHHHhhhhhheeEEecccccccccccHHHHHHHHHhcCCEEEecCCCccceecccCCccccccceeeccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHH
Q 001989 796 CIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIA 875 (985)
Q Consensus 796 ~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~ 875 (985)
++|||+||||+|.|.+++++.+++|+..+..... .+.....+.+++++||+++.+.++|+||++||..|+++..+..
T Consensus 746 cIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~---~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~GL~~as~~A 822 (1001)
T KOG2040|consen 746 CIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGR---PEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGGLKDASKIA 822 (1001)
T ss_pred eecCCCCCCCCCccchhhhccccCCCCCccCCCC---CCCCCCccceeccCCCcceeehhHHHHHHHhcccccchhhHHH
Confidence 9999999999999999999999999886643211 1112235567888999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCH
Q 001989 876 ILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESK 955 (985)
Q Consensus 876 ~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~ 955 (985)
+.|++|++++|+..++++|.+.++.+.|+|+++.++||+..|+++.+|+|+|+++|+++++++||++++|||.||+..++
T Consensus 823 iLNaNYMakRLe~hYkil~~~~~~~vaHEFIlD~r~fK~~agieavDvAKRL~DYgFHaPTmswPV~gtLMIEPTESE~k 902 (1001)
T KOG2040|consen 823 ILNANYMAKRLESHYKILFRGENGLVAHEFILDLRPFKKTAGIEAVDVAKRLMDYGFHAPTMSWPVAGTLMIEPTESEDK 902 (1001)
T ss_pred hhhhHHHHHHHhhccceeEecCCcceeeeeeeechhhccccCCcHHHHHHHHHhccCCCCccccccCCceEeccCccccH
Confidence 99999999999999999998887889999999999998878999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCChhHHHHh---hccCCc
Q 001989 956 SWTGIVMLSSPSEKKLHR---LKMGRQ 979 (985)
Q Consensus 956 eeId~~~~~~~l~~~~~~---~~~~~~ 979 (985)
+|+|| ||+++..+-++ +.+|+|
T Consensus 903 ~ElDR--fcdAliSIreEI~~ie~G~~ 927 (1001)
T KOG2040|consen 903 AELDR--FCDALISIREEIAQIEEGRQ 927 (1001)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHccCC
Confidence 99999 99988777555 555665
No 2
>PRK12566 glycine dehydrogenase; Provisional
Probab=100.00 E-value=5.4e-168 Score=1498.73 Aligned_cols=868 Identities=55% Similarity=0.944 Sum_probs=794.4
Q ss_pred CCCCccccccCCCCCHHHHHHHHHHhCCCCHHHhhhhcCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCcccee
Q 001989 92 LKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSF 170 (985)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~~~~~ 170 (985)
+.+.|.|..|||++|++|+++||++||++|+||||+++||+++ ++++++|| +++||.|+++|++++|+||+.+.+|
T Consensus 7 ~~~~~~f~~rh~g~~~~~~~~ML~~iG~~s~d~l~~~~iP~~ir~~~~l~lp---~~~sE~e~~~~~~~~a~kN~~~~~f 83 (954)
T PRK12566 7 LQEPDAFLRRHLGPDAAEQQAMLDALGVASRAELIEQTVPPAIRLNRPLDLP---AALDEQAALARLRGYAEQNQVWTSL 83 (954)
T ss_pred cccccchhhccCCCCHHHHHHHHHhcCccCHHHHhhccCCHHHhcCCCCCCC---CCCCHHHHHHHHHHHHhcCCCcccc
Confidence 5567889999999999999999999999999999977899999 78889997 7899999999999999999999999
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhh
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI 250 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~ 250 (985)
+|+|+|+|++|++|.++|++|++|||+|||||||+|||+||+++|||+|||+|||||.+|+||||++||++||+.|+.++
T Consensus 84 iG~G~y~~~~P~vi~~~i~~~~~~yTaYTPYQpEisQG~Lqal~e~Qtmi~~LtGm~vaNASl~D~atA~aEA~~ma~~~ 163 (954)
T PRK12566 84 IGMGYHGTVTPTVILRNVLENPGWYTAYTPYQPEIAQGRLEALLNFQQMTIDLTGLDLANASLLDEATAAAEAMALAKRV 163 (954)
T ss_pred ccccccCCcCcHHHHHHHHhCchhhhcCCCCCchhhhHHHHHHHHHHHHHHHHhCchhhhhhhccchhHHHHHHHHHHHH
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEE
Q 001989 251 QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKV 329 (985)
Q Consensus 251 ~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~gall 329 (985)
+++++++|+|++.+||++++++++|++..|++++. +++++ +++++++|+||+||++|.++|+++|++++|++|+++
T Consensus 164 ~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~---~~~~~~~~~~~~~v~vq~P~~~G~i~d~~~i~~~~h~~gal~ 240 (954)
T PRK12566 164 AKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV---DAVDNLAAHAVFGALLQYPDTHGEIRDLRPLIDQLHGQQALA 240 (954)
T ss_pred hhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE---cchhhcCCCCEEEEEEECCCCceEEccHHHHHHHHHHcCCEE
Confidence 64457899999999999999999999999999987 44555 677899999999999999999999999999999999
Q ss_pred EEEecCccccCCCCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccc
Q 001989 330 VMATDLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQ 409 (985)
Q Consensus 330 iV~a~~~~lg~l~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~ 409 (985)
+|++|+++++++++||+|||||+||++|.||+||+|||||+|||+++++++|+||||+||+|+|.+|+++|+|+||||||
T Consensus 241 ~~~~d~laL~ll~~Pge~GADI~vG~~Q~fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQ 320 (954)
T PRK12566 241 CVAADLLSLLVLTPPGELGADVVLGSTQRFGVPMGYGGPHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQ 320 (954)
T ss_pred EEEeCHHHHhCCCChhhcCCcEEeeCCCcCCCCCCCCCCCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC-CHHHH
Q 001989 410 HIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA-DAHAI 488 (985)
Q Consensus 410 ~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-~~~~v 488 (985)
|||||||||||||+|+|+|++|++|+.++|++||++++++++.+++||+++|.+.| +++..+++|++|++++. .+.++
T Consensus 321 HIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~g-~~~~~~~fF~~~~v~~~~~~~~~ 399 (954)
T PRK12566 321 HIRREKANSNICTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEAKG-IKRLNRHFFDTLTLEVGGAQAAI 399 (954)
T ss_pred HhhhccccchhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcC-CccccCCccceEEEEccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999987 99987799999999986 38888
Q ss_pred HHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhCCCCCCCCHHhhhhh-hhccCCCCccCCCCCCCCccccCC
Q 001989 489 ASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAEE-VETAIPSGLTRESPYLTHPVFNKY 567 (985)
Q Consensus 489 ~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~~~~~~~~~~~l~~~-~~~~ip~~~~~~~~~~~~p~~~~~ 567 (985)
.++..++||+++.++.+.+.+|++|.+|.+|++.++++|...+.. .+.+.+... +...||+.++|+++|+++|||+.+
T Consensus 400 ~~~a~~~~~n~r~~~~~~~~~s~de~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~~~~~~~p~~~~r~~~~~~~p~f~~~ 478 (954)
T PRK12566 400 IESAEAARINLRILGRGRLGVSLDETCDEATVARLFDIFLGADHG-LDVAALDQGALAEGIPAVLQRRTAYLQHPVFNAH 478 (954)
T ss_pred HHHHHHCCCeeEEeCCCeEEEEeCCCCCHHHHHHHHHHhcCCCcc-cchhhhccccccccCchhhhcCCccccCcccccC
Confidence 888889999999988889999999999999999999999632111 011111110 112499999999999999999999
Q ss_pred CCHHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCC
Q 001989 568 HTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGF 647 (985)
Q Consensus 568 ~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~ 647 (985)
+||.|++|||++|+++|.+.+++|+|||+||||+|++.|++|++|++|++.|||||.|++||++|+++|+++++|+++|+
T Consensus 479 ~SE~el~r~~~~La~kn~~~~~~~~~LGsCTmK~n~~~~~~p~s~~eF~t~hPyqp~e~sQG~lq~i~elq~~l~eLtGm 558 (954)
T PRK12566 479 HSETEMLRYLKQLENKDLALNQSMIPLGSCTMKLNATSEMIPITWPEFAQLHPFAPREQAEGYRAMIDELEAWLCAITGF 558 (954)
T ss_pred CCHHHHHHHHHHHHhcCcCcccCcccCcccccCcCcHHhhhcccchhhhcCCCCCchhhhcCHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCCCCHHHHHHHHHhc
Q 001989 648 DSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEAN 727 (985)
Q Consensus 648 ~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~ 727 (985)
+.++++++||++|++++++++|.|+.++|..++++||++.+.|++|+.++.+.|++++.+|+|++|.+|+++|+++++++
T Consensus 559 d~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpasa~~~GieVv~Vp~D~~G~iDle~L~a~I~~~ 638 (954)
T PRK12566 559 DAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPASAQMAGMRVVIVECDPDGNVDLDDLKAKAAAA 638 (954)
T ss_pred CeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHhhcc
Confidence 99999999999999999999999999998767889999999999999999999999999999989999999999999866
Q ss_pred CCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCCCCCCceE
Q 001989 728 RDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMG 807 (985)
Q Consensus 728 ~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G 807 (985)
++++++|++++||+.|++++|+++|+++||++|++++||++|++++.++..|+++|+|++++++||||+.|+|+|||++|
T Consensus 639 ~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG 718 (954)
T PRK12566 639 GDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARPADIGADVSHMNLHKTFCIPHGGGGPGMG 718 (954)
T ss_pred CCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCChhhcCCCEEEecCCcccCcCccCCCCccc
Confidence 78999999999999998875799999999999999999999998999998899999999999999999999999999999
Q ss_pred EEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhh
Q 001989 808 PIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLE 887 (985)
Q Consensus 808 ~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~ 887 (985)
++.+++++.+++++... ...+ +++.+++++++++ +++++.+.+||+||..+|.+ +++.++.+..+++|++++|.
T Consensus 719 ~iav~~~L~pfLp~~P~-~d~~-G~~~r~ga~S~~~---~gsa~~l~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~ 792 (954)
T PRK12566 719 PIGVRAHLAPFVANHPV-VPVE-GPDPNNGAVSAAP---WGSASILPISWMYIAMMGPQ-LADASEVAILSANYLANQLG 792 (954)
T ss_pred hhhhhhhhhhhccCCCC-cCCC-CCCCCCCceeecc---cchHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHhH
Confidence 99999988888775421 0000 1222334455554 56888899999999999999 99888888999999999998
Q ss_pred ccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCCh
Q 001989 888 KHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPS 967 (985)
Q Consensus 888 ~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l 967 (985)
+++++.+.++.++++|++++++..+++..+++..+++++|.++||++++++||+.+++|||||++++++|||+ |+++|
T Consensus 793 ~~~~v~~~~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL~d~Gihapt~~fPv~~~LmIepTE~eskeEIDr--f~eAL 870 (954)
T PRK12566 793 GAFPVLYRGRNERVAHECILDLRPLKAQTGISEEDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESKAELDR--FVEAM 870 (954)
T ss_pred hhCCCCcCCCCCCeeeEEEEEccccccccCCCHHHHHHHHHHCCcEEeEEeeccCCEEEEEeeeeCCHHHHHH--HHHHH
Confidence 8888877544457899999998765544567889999999999999998889999999999999999999999 88999
Q ss_pred hHHHHhhc
Q 001989 968 EKKLHRLK 975 (985)
Q Consensus 968 ~~~~~~~~ 975 (985)
+++.++++
T Consensus 871 ~~I~~e~~ 878 (954)
T PRK12566 871 LSIRAEIG 878 (954)
T ss_pred HHHHHHHH
Confidence 88887743
No 3
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=100.00 E-value=8.6e-164 Score=1474.93 Aligned_cols=866 Identities=59% Similarity=0.972 Sum_probs=795.9
Q ss_pred cCCCCCHHHHHHHHHHhCCCCHHHhhhhcCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCccceecCCCCCCCC
Q 001989 101 RHNSATPEDQAKMSELVGLDNLDSLIDATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTH 179 (985)
Q Consensus 101 ~~~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~~~~~lG~g~y~~~ 179 (985)
|||+++++|+++||++||++|+||||++.||+++ ++++++|| +++||.|+++||++|+++|+.+.+|+|+|+|+|+
T Consensus 1 rh~g~~~~~~~~ML~~iG~~s~d~l~~~~iP~~i~~~~~l~lp---~~~sE~e~~~~~~~la~~N~~~~~fig~G~y~~~ 77 (939)
T TIGR00461 1 RHLGPSPSDQKKMLKTMGYSDLNALIEQLVPPNILKRRPLQLE---APSKEYEALAHLKKIASKNHKFKSYIGMGYYGTI 77 (939)
T ss_pred CCCCcCHHHHHHHHHhcCCCCHHHHhhccCCHHHhcCCCCCCC---CCCCHHHHHHHHHHHHhcCCCccccCCCCcCCCc
Confidence 8999999999999999999999999998899999 88889997 7899999999999999999999999999999999
Q ss_pred CcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEE
Q 001989 180 VPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFI 259 (985)
Q Consensus 180 ~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vl 259 (985)
+|++|.|++++||+|||+|||||||+|||+||+++|||+++|+||||+.+|+||+|++|+++||+.||.+..++++++|+
T Consensus 78 ~p~~i~r~v~~~p~~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vl 157 (939)
T TIGR00461 78 LPPVIQRNLLENPGWYTAYTPYQPEISQGRLEALLNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNVSKKKANKFF 157 (939)
T ss_pred CChHHHHHHHhCchhhhcCCCCChhhhhHHHHHHHHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHhhcCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999776544668999
Q ss_pred EcCCCChhHHHHHHHhhcCCCeEEEEeCchhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccc
Q 001989 260 IASNCHPQTIDICITRADGFDIKVVVSDLKDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLAL 338 (985)
Q Consensus 260 v~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~l 338 (985)
|++++||+++.+++++++..|++++.+|.++|+. + ++++|++|+||++|.++|+++|++++|++|++++|++|++++
T Consensus 158 v~~~~hP~~~~v~~t~a~~~g~~v~~~~~~~l~~~~--~~~~v~~q~Pn~~G~ied~~~i~~~~h~~gal~~~~ad~~al 235 (939)
T TIGR00461 158 VAKDLHPQTKSVLHTRAKPFGIEVIVVDCSDIKKAV--DVFGCLLQYPATDGSILDYKQLIDALHSHKSLVSVAADLMAL 235 (939)
T ss_pred ECCCCCcchHHHHHHHHHhcCcEEEEEcHHHHhhcC--CEEEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechHHh
Confidence 9999999999999999999999999999988876 5 689999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCC
Q 001989 339 TILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATS 418 (985)
Q Consensus 339 g~l~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~ats 418 (985)
+++++|++|||||+|+++|+||+||+|||||+|||+++++++|+||||++|+|+|.+|+++|+|+|||||||||||||||
T Consensus 236 ~ll~~Pge~GaDi~vg~~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtS 315 (939)
T TIGR00461 236 TLLTPPGHYGADIVLGSSQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATS 315 (939)
T ss_pred CCcCCHHHcCCcEEeeCCCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC--CHHHHHHHHHHcC
Q 001989 419 NICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA--DAHAIASAAYKIE 496 (985)
Q Consensus 419 ni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~--~~~~v~~~L~~~G 496 (985)
||||++++++++|++|+.++|++|+++++++++.+++||+++|++.| +++..+++|++|+++++ .++++.++|.++|
T Consensus 316 NICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~G-~~~~~~~fF~~~~v~~~~~~~~~i~~~~~~~g 394 (939)
T TIGR00461 316 NICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLENDP-HELINKTWFDTLTVKVGNGISSELLKAAEEFN 394 (939)
T ss_pred chhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCccceEEEEeCCCCHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999988 99987789999999987 3899999999999
Q ss_pred ceeeeecCCeEEEEeccCCCHHHHHHHHHHHhCCCCCCCCHHhhhhhhhccCCCCccCCCCCCCCccccCCCCHHHHHHH
Q 001989 497 MNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRY 576 (985)
Q Consensus 497 I~~~~~~~~~lris~t~~~t~edId~li~aL~~~~~~~~~~~~l~~~~~~~ip~~~~~~~~~~~~p~~~~~~se~e~~~~ 576 (985)
|+++....+.+++|+||++|++|||.|+++|...+......+.+.+.+...||+.++|+++++.+|||+.++||.|++||
T Consensus 395 i~l~~~~~~~i~~s~~E~~t~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~f~~~~sE~e~~r~ 474 (939)
T TIGR00461 395 INLRAVDTTTVGIALDETTTKADVENLLKVFDGEDNHGLSSQFLSEDVSNSFPREFQRTDEILRNEVFNMYHSETEMLRY 474 (939)
T ss_pred CeeeecCCCEEEEEeecCCCHHHHHHHHHHhcCCCccccchhhhhhhhcccCchhhhccCcccCCcccccCCCHHHHHHH
Confidence 99987666799999999999999999999996321101011111111112499999999999999999999999999999
Q ss_pred HHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCc
Q 001989 577 IHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNA 656 (985)
Q Consensus 577 l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~s 656 (985)
|++|+++|.+.+++++++|+|||++|+..++.+++|++|++||||||.+++||++++++|+++|+|+++|++.+++++++
T Consensus 475 ~~~L~~kn~~~~~~fi~lGsctmk~na~v~~l~~s~~ef~t~hPyqPe~~sqG~lq~i~elq~~l~eltGmd~~Sl~p~a 554 (939)
T TIGR00461 475 LHRLESKDLALNNSMIPLGSCTMKLNATAEMMPITWPEFSNIHPFQPSNQVEGYQELIAQLEKWLCSITGFDAISLQPNS 554 (939)
T ss_pred HHHHHhcCCCccccCCCCccCCCccCHHHHHHHhcchhhcCcCCCCchHHhHHHHHHHHHHHHHHHHHHCCCCcccCCch
Confidence 99999999998899999999999999999999999999999999999669999999999999999999999998999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEE
Q 001989 657 GAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMV 736 (985)
Q Consensus 657 Ga~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv 736 (985)
|++|+.++++++|.|+..+|..++++|++|.++||++|+++++.|++++.||+|++|.+|+++|++++++++++|++|++
T Consensus 555 GA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~~G~~Vv~V~~d~~G~iDle~L~~~i~~~~~~taaV~i 634 (939)
T TIGR00461 555 GAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAMAGMQVVPVNCDQDGNIDLVDLKNKAEQHGDELAAVMV 634 (939)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhhcCCceEEEEE
Confidence 99999889999999998888666788999999999999999999999999999989999999999999865569999999
Q ss_pred EcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEccccc
Q 001989 737 TYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLA 816 (985)
Q Consensus 737 ~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~ 816 (985)
++||++|++++|+++|+++||++|++++||+||++++.++.+|+++|+|+++++.||+|+.|+|+||||+|++++++++.
T Consensus 635 T~pst~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~ 714 (939)
T TIGR00461 635 TYPSTHGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLI 714 (939)
T ss_pred EeCCcCceecccHHHHHHHHHHcCCEEEEEecChhhCCCCCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhch
Confidence 99999999985699999999999999999999998888888999999999999999999999999999999999999999
Q ss_pred CcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecC
Q 001989 817 PFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRG 896 (985)
Q Consensus 817 ~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~ 896 (985)
+++|++.++.+.+.. +++...+.+++.++|+++.+.++|+||+.+|.+|+++..+....+|+|++++|++++++++.+
T Consensus 715 ~~lPg~~v~~t~d~~--greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~~~~~l~~~ 792 (939)
T TIGR00461 715 PFLPKHDVVSMITGI--GGSKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKDHYPILFVG 792 (939)
T ss_pred hhcCCCcccccccCC--CCccccccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhccCcccccC
Confidence 999998776543210 122222233333567889999999999999999999999999999999999999888888866
Q ss_pred CCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 897 VNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 897 ~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+.++++|+|+++++++++..|++..+|+++|.++|++.++++||+.++++|+||+.+|++|||+ |++++.++.++++.
T Consensus 793 ~~~~~~hEfv~~~~~~~~~~g~~~~dIakrL~d~G~hapt~~~pv~g~lmiepTE~eskeelD~--f~~al~~I~~e~~~ 870 (939)
T TIGR00461 793 TLKHVAHECILDLRPLKAKTGIEAIDVAKRLQDYGFHAPTLSFPVPGTLMVEPTESESLEELDR--FCDAMIAIKEEINA 870 (939)
T ss_pred CCCceeEEEEEeccchhhhcCCCHHHHHHHHHhCCeeccccCCccCCeEEEEeeccCCHHHHHH--HHHHHHHHHHHHHH
Confidence 5567899999999865555678899999999999999999889999999999999999999999 88999888776654
No 4
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=100.00 E-value=2e-159 Score=1456.71 Aligned_cols=882 Identities=85% Similarity=1.329 Sum_probs=798.5
Q ss_pred CCCCccccccCCCCCHHHHHHHHHHhCCCCHHHhhhhcCCCccccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCccceec
Q 001989 92 LKPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFI 171 (985)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~~~~~l 171 (985)
+.+.|.|..||||||++|+++||++||++|+||||+++||+++++++++||.+.+++||.|+++||++|+.+|+.+.+|+
T Consensus 29 ~~~~~~f~~r~i~~~~~~~~~ML~~ig~~s~d~l~~~~iP~~i~~~~l~lp~~~~~~sE~e~~~~~~~la~kN~~~~~fi 108 (993)
T PLN02414 29 LKPSDTFPRRHNSATPEEQKAMAEYCGFDSLDALIDATVPKSIRLDSMKLSKYDEGLTESQMLEHMKSLASKNKVFKSYI 108 (993)
T ss_pred cccccchhhccCCcCHHHHHHHHHhcCccCHHHHhhccCCHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHhcCCcccccc
Confidence 34466899999999999999999999999999999778999995557888533368999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhh
Q 001989 172 GMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ 251 (985)
Q Consensus 172 G~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~ 251 (985)
|+|+|+|++|++|.++++++++|||+|||||||+|||+||+++|||+++|+|+||+++|+||++++|+++|+++|+.++.
T Consensus 109 G~G~y~~~~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~~~ 188 (993)
T PLN02414 109 GMGYYNTHVPPVILRNILENPGWYTQYTPYQAEIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNIL 188 (993)
T ss_pred CCCCCCccCCHHHHHHHHhChHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHhcc
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999998776
Q ss_pred cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchhhhccCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEE
Q 001989 252 KGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDYKSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVM 331 (985)
Q Consensus 252 ~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~~l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV 331 (985)
++++++|++++.+||+++.+|+++++..|++++.+|.++....++++.++++|+||++|.+.|+++|+++||++|++++|
T Consensus 189 ~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~~~~~~~v~~vlvq~P~~~G~v~dv~~I~~~ah~~GaL~iV 268 (993)
T PLN02414 189 KGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDFDYSSGDVCGVLVQYPATDGEVLDYAEFVKNAHANGVKVVM 268 (993)
T ss_pred cCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhhccccCceEEEEEecCCCCeEEcCHHHHHHHHHHcCCEEEE
Confidence 45668999999999999999999999999999999876532234578889999999999999999999999999999999
Q ss_pred EecCccccCCCCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccc
Q 001989 332 ATDLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHI 411 (985)
Q Consensus 332 ~a~~~~lg~l~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~i 411 (985)
++|+++++.+++|+++||||+++++|+|++|+++|||++|||++++++.+++|||++||++|.+|+++|+++||+|||||
T Consensus 269 aad~lal~~l~~pge~GADi~vgsgqKwg~P~G~GGP~aGflavr~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhi 348 (993)
T PLN02414 269 ATDLLALTMLKPPGEWGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHI 348 (993)
T ss_pred EECHHHhcCCCCHhhccCcEEEECCCccccCCCCCCCCeeEEEECHHHHhhCCCcccCcccCCCCCcccccccccccchh
Confidence 99999999998999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred cccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCCHHHHHHH
Q 001989 412 RRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASA 491 (985)
Q Consensus 412 rre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~ 491 (985)
|||+|||||||++++++.++++|+.++|++|+++++++++++++|++++|.+.| +++..+++|++|+|+.+++.++.++
T Consensus 349 RrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~G-~~~~~~~~f~~vt~~~~~~~~v~~~ 427 (993)
T PLN02414 349 RRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKLG-FQVQSLPFFDTVKVKCSDADAIADA 427 (993)
T ss_pred hhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhcC-CccCCCCCcCeEEEecCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888 9988778899999988668889999
Q ss_pred HHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhCCCCCCCCHHhhhhhhhccCCCCccCCCCCCCCccccCCCCHH
Q 001989 492 AYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEH 571 (985)
Q Consensus 492 L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~~~~~~~~~~~l~~~~~~~ip~~~~~~~~~~~~p~~~~~~se~ 571 (985)
|.++||+++....+.+|+|+|++||++|||+|+++|...+......+.+...+...||+.++|+++++++|+|+.++||.
T Consensus 428 L~~~gI~l~~~~~~~lrvs~~e~~T~edId~L~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~~l~~p~f~~~~se~ 507 (993)
T PLN02414 428 AAKVGINLRVVDANTVTVSFDETTTLEDVDKLFKVFAGGKPVPFTAESLAPEVDSSIPSSLARESPYLTHPIFNQYHSEH 507 (993)
T ss_pred HHHCCCeeEEecCCeEEEEeeccCCHHHHHHHHHHHcccccccchhhhhhhhhcccCchhhhccCccccCcccccccCHH
Confidence 99999999887778899999999999999999999974311110011121111225999999999999999999999999
Q ss_pred HHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccc
Q 001989 572 ELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFS 651 (985)
Q Consensus 572 e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~ 651 (985)
|++||+.+|+++|++++++|++|||||||+|+..++.+++|++|.++|||+|.++.||++++++++++++++++|++.+.
T Consensus 508 ~~~r~~~~l~~~~~~~~~~~~plgsctmk~n~~~~~~~~~~~~~~~~hp~~p~~~~~g~~~~~~~~r~~la~i~g~~~v~ 587 (993)
T PLN02414 508 ELLRYLHRLQNKDLSLVHSMIPLGSCTMKLNATTEMMPVTWPEFANIHPFAPVDQAQGYQEMFEDLGDLLCEITGFDSFS 587 (993)
T ss_pred HHHHHHHHHhhcccccccCCccCcccccccCchhhhhhhcCcchhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCE
Q 001989 652 LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNL 731 (985)
Q Consensus 652 ~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t 731 (985)
|++|+|++|+++.+++++.|+..+|+.++++||+|.++|++|+..+.+.|++++.+|+|++|.+|+++|+++|+.+.++|
T Consensus 588 f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G~~vv~v~~d~~G~vDle~L~~~i~~~~~~t 667 (993)
T PLN02414 588 LQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCGMKIVVVGTDAKGNINIEELRKAAEAHKDNL 667 (993)
T ss_pred EcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhccCCCe
Confidence 99999999999999999999876665467799999999999999999999999999999899999999999998555689
Q ss_pred EEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEE
Q 001989 732 STLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGV 811 (985)
Q Consensus 732 ~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~ 811 (985)
++|++++||+.|.+..||++|+++||++|++++||++|+++++++..|+++|+|+++++.||||+.|+|+||||+|++++
T Consensus 668 a~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~ 747 (993)
T PLN02414 668 AALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGV 747 (993)
T ss_pred EEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCCccccCCCEEEecCCccCCcCcccCCCCeeeEEE
Confidence 99999999876666558999999999999999999999999988889999999999999999999999999999999999
Q ss_pred cccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 001989 812 KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYP 891 (985)
Q Consensus 812 ~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~ 891 (985)
++++.+++|++.++.+....++......+.+.++++|+++.+.+||+||..+|.+|+++.++++..+++|++++|.++++
T Consensus 748 ~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~ 827 (993)
T PLN02414 748 KKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHYP 827 (993)
T ss_pred chhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 99999999998766533211111111122333357889999999999999999999999999999999999999988888
Q ss_pred eeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 892 ILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 892 l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+.+.++.++++|+|+++++.+++..|+++.+++++|.++||++++++||+++++||+||++++++|||+ |+++++++.
T Consensus 828 ~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~d~Gihapt~~~pv~~~lmiepTE~~skeelDr--f~~al~~i~ 905 (993)
T PLN02414 828 VLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDR--FCDALISIR 905 (993)
T ss_pred ccccCCCCCeeeeEEEeccccccccCCCHHHHHHHHHHcCcEEeeeccccCCEEEEEeeeeCCHHHHHH--HHHHHHHHH
Confidence 887665568999999998765544567889999999999999998889999999999999999999999 889998888
Q ss_pred Hhhcc
Q 001989 972 HRLKM 976 (985)
Q Consensus 972 ~~~~~ 976 (985)
.+.+.
T Consensus 906 ~e~~~ 910 (993)
T PLN02414 906 EEIAD 910 (993)
T ss_pred HHHHH
Confidence 77653
No 5
>PRK05367 glycine dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-154 Score=1422.82 Aligned_cols=867 Identities=61% Similarity=1.032 Sum_probs=793.8
Q ss_pred CCCccccccCCCCCHHHHHHHHHHhCCCCHHHhhhhcCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCccceec
Q 001989 93 KPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFI 171 (985)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~~~~~l 171 (985)
.+.|+|+.||||||++|+++||++||++|+||||++.||+++ ++++++|| +++||.|+++||++|++||+.+.+|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~ml~~~g~~s~~~l~~~~iP~~i~~~~~l~lp---~~~sE~e~~~~~~~la~~N~~~~~~i 81 (954)
T PRK05367 5 ENSDAFARRHIGPSAADQQAMLAALGADSLDALIDQAVPASIRLAEPLDLP---AALSEAEALAELRAIASKNKVFRSYI 81 (954)
T ss_pred cccccccccCCCcCHHHHHHHHHhcCCCCHHHHhhhhCCHHHhcCCCCCCC---CCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 456789999999999999999999999999999998899999 88889997 78999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhh
Q 001989 172 GMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ 251 (985)
Q Consensus 172 G~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~ 251 (985)
|+|+|+|++|++|.++|++||+|||+|||||||+|||+||++++||+++|+|+||+++|+|+++++|+++|+++|++++.
T Consensus 82 g~G~y~~~~P~vi~~~i~~~~~~~t~ytPyQ~EisQG~Leal~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~~~ 161 (954)
T PRK05367 82 GQGYYGTHTPPVILRNILENPAWYTAYTPYQPEISQGRLEALLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKRVS 161 (954)
T ss_pred CCCCCCCcCcHHHHHHHHhCcchhhccCCCChHHHHHHHHHHHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhhhc
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999998775
Q ss_pred cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchh-hhccCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEE
Q 001989 252 KGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKD-IDYKSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVV 330 (985)
Q Consensus 252 ~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~-l~~l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galli 330 (985)
++++++|++++.+||+++.+|+++++..|+++++++.++ +. ++++.+|++|+||++|.+.|+++|+++||++|++++
T Consensus 162 ~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~d~~--~~~~~~vlvq~p~~~G~i~d~~~i~~~ah~~Gal~~ 239 (954)
T PRK05367 162 KSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAKALD--HDDVFGVLLQYPGTSGEVRDYTALIAAAHARGALVA 239 (954)
T ss_pred cCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCccCCC--cccEEEEEEecCCCCeeeccHHHHHHHHHHcCCEEE
Confidence 334689999999999999999999999999999998743 32 457889999999999999999999999999999999
Q ss_pred EEecCccccCCCCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccccccc
Q 001989 331 MATDLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQH 410 (985)
Q Consensus 331 V~a~~~~lg~l~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~ 410 (985)
|++++.+++++.+|+++||||+++++|+|++|+++||||+|||++++++.++||||++||++|.+|+++|+|++||||||
T Consensus 240 vda~~~Al~~l~~pge~GaDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqh 319 (954)
T PRK05367 240 VAADLLALTLLTPPGEMGADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQH 319 (954)
T ss_pred EEehhhhccCCCChhhcCCCEEEeeCcccCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCCccccccccccccc
Confidence 99888899999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred ccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC-HHHHH
Q 001989 411 IRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-AHAIA 489 (985)
Q Consensus 411 irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~~~v~ 489 (985)
||||+|||||||+++++++++++|+.++|++|+++++++++.+++|++++|++.| +++..+++|++++++.+. +.++.
T Consensus 320 iRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G-~~~~~~~~f~~~~~~~~~~~~~i~ 398 (954)
T PRK05367 320 IRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRALG-LEVVHDSFFDTLTVEVGGDAAAVL 398 (954)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcC-cccCCCCCCCeEEEeCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999998877 998877788999998864 89999
Q ss_pred HHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhCCCCCCCCHHhhhhhh----hccCCCCccCCCCCCCCcccc
Q 001989 490 SAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAEEV----ETAIPSGLTRESPYLTHPVFN 565 (985)
Q Consensus 490 ~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~~~~~~~~~~~l~~~~----~~~ip~~~~~~~~~~~~p~~~ 565 (985)
++|.++||+++...++.+|+|+||++|++|||+|+++|+..+. ..+.+...+ ...||+.++|+++++.+|||+
T Consensus 399 ~~l~~~gi~~~~~~~~~l~is~~e~~t~~did~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~ 475 (954)
T PRK05367 399 ARALAAGINLRRVDDDHVGISLDETTTREDLAALLAVFGGAAL---DVDALDADVADASASALPAALLRTSAYLTHPVFN 475 (954)
T ss_pred HHHHHCCceeccccCCEEEEEecccCCHHHHHHHHHHHccccc---chhhhhhhhcccccccCCHHHhcCCcccCCcccC
Confidence 9999999999876678999999999999999999999984321 111111111 124999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHh
Q 001989 566 KYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTIT 645 (985)
Q Consensus 566 ~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~ 645 (985)
.++||.|++|||++|++||.+++++|++||+|||++|+..++.+++|++|.+||||||.|++||++++++++++|+++++
T Consensus 476 ~~~sE~e~~r~~~~l~~kn~~~~~~~i~lGsct~~~~p~~~~~~~~~~~f~~~hP~qp~e~~qG~l~~i~e~q~~l~elt 555 (954)
T PRK05367 476 RYHSETEMMRYLRRLEDKDLALDRSMIPLGSCTMKLNAAAEMIPITWPEFANLHPFAPAEQAAGYRELIDQLEAWLAEIT 555 (954)
T ss_pred CCCCHHHHHHHHHHHHhcCcCcccceeeCCcCCCcCCHHHHHHHHhCccccccCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCCCCHHHHHHHHH
Q 001989 646 GFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAE 725 (985)
Q Consensus 646 G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~iD~e~L~~~i~ 725 (985)
|++.+++++++|++|++++++++|.|+.++|..++++|++++.+|+++++++.+.|++++.++++.+|.+|+++|+++++
T Consensus 556 G~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~vv~v~~d~~G~iD~~~L~~~i~ 635 (954)
T PRK05367 556 GYDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMKVVVVACDENGNIDLDDLRAKAE 635 (954)
T ss_pred CCCCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCCEEEEECCCCCCCcCHHHHHHHHh
Confidence 99988899999999999999999998776765456789999999999999999999999999998889999999999998
Q ss_pred hcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCCCCCCc
Q 001989 726 ANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPG 805 (985)
Q Consensus 726 ~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg 805 (985)
++++++++|++++|++.|++..|+++|+++||++|+++|||+||+.++.++..|+++|+|++++++||||++|||+||||
T Consensus 636 ~~~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~pg~~GADi~~~s~HK~f~~P~G~GGPg 715 (954)
T PRK05367 636 EHADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLARPGDIGADVSHLNLHKTFCIPHGGGGPG 715 (954)
T ss_pred ccCCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCChhhcCCCEEEecCcccCCCCcCCCCCc
Confidence 54457999999999998988548999999999999999999999888888888999999999999999999999999999
Q ss_pred eEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 001989 806 MGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKR 885 (985)
Q Consensus 806 ~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~ 885 (985)
+|++++++++.+++|++.++.+.+ ..+.+.++++++|+++.+.++|+|+..+|.+|+++..++++.+++|++++
T Consensus 716 ~G~l~vr~~l~p~lpg~~v~~~~~------~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~ 789 (954)
T PRK05367 716 VGPIGVKAHLAPFLPGHPVQIAGG------ETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKR 789 (954)
T ss_pred eEEEeecccccccCCCCccCcCCC------CCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886543221 12345666667888888899999999999999999999999999999999
Q ss_pred hhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccC
Q 001989 886 LEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSS 965 (985)
Q Consensus 886 L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~ 965 (985)
|++++++.+.++.++++|+++++++.++...+++..+++++|.++||++++++||+++++||+||++++++|||+ |++
T Consensus 790 L~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~g~~~~di~krL~d~G~~~~t~~~pv~~~l~i~ptE~~s~~elDr--~~~ 867 (954)
T PRK05367 790 LKDHYPVLYTGANGRVAHECILDLRPLKESTGITVDDIAKRLIDYGFHAPTMSFPVAGTLMVEPTESESKAELDR--FCD 867 (954)
T ss_pred HHhhcCccccCCCCCcccceEEEeecccccCCCCHHHHHHHHHHCCCeEeecCCccCCEEEEEeeecCCHHHHHH--HHH
Confidence 988888877765567899999998655444467889999999999999998889999999999999999999999 889
Q ss_pred ChhHHHHhhcc
Q 001989 966 PSEKKLHRLKM 976 (985)
Q Consensus 966 ~l~~~~~~~~~ 976 (985)
+++++..+++.
T Consensus 868 al~~i~~e~~~ 878 (954)
T PRK05367 868 AMIAIRAEIDE 878 (954)
T ss_pred HHHHHHHHHHH
Confidence 99888877654
No 6
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-107 Score=877.20 Aligned_cols=438 Identities=55% Similarity=0.876 Sum_probs=409.9
Q ss_pred CCCccccccCCCCCHHHHHHHHHHhCCCCHHHhhhhcCCCccccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCccceecC
Q 001989 93 KPSDTFARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIG 172 (985)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~~~~~lG 172 (985)
.+.|.|+.|||+|+++|+++||++||++|+||||+++||++|+++...++.+|+++||.|+++++++++++|+.+.+|+|
T Consensus 2 ~~~~~f~~rh~~P~~~d~~~ML~~iG~~Sld~L~~~~IP~~Ir~~~~~~~~~~~~~sE~e~l~~l~~ia~kN~~~~sfiG 81 (450)
T COG0403 2 EPLDAFMARHIGPSSADQQEMLAAIGVSSLDELFSQDIPPSIRKKLDTLLPLPKPLSEYEALAELKEIASKNKVFTSFIG 81 (450)
T ss_pred CccchhhhcCCCCChHHHHHHHHHcCCCCHHHHhhccCCHHHHhcccccCCCCCCCCHHHHHHHHHHHHhcCchhhhhcc
Confidence 45788999999999999999999999999999999889999942222221235889999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhc
Q 001989 173 MGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQK 252 (985)
Q Consensus 173 ~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~ 252 (985)
+|+|+|++|++|.|+|++||||||+|||||||||||+||++||||+++|+|||||++|+||||++|+++||+.||.|.++
T Consensus 82 ~GyY~~~~P~vI~rnile~pewyTaYTPYQpEISQGrLqaLfefQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r~~k 161 (450)
T COG0403 82 AGYYDTYTPPVILRNILENPEWYTAYTPYQPEISQGRLEALFEFQTLVADLTGLDVANASMLDEATAAAEAMLMAKRVTK 161 (450)
T ss_pred CcccCCcCcHHHHHHhhcCccccccCCCCchhhhhHHHHHHHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchhhhc----cCCCEeEEEEEcCCCCe-eeccHHHHHHHHHhCCc
Q 001989 253 GKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDY----KSGDVCGVLVQYPGTEG-EVLDYGDFIKNAHANGV 327 (985)
Q Consensus 253 ~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~~----l~~~t~~V~v~~pn~~G-~v~di~~I~~~a~~~ga 327 (985)
+++++|+|++.+||+.+++++||++++|++++.++.++++. .+.++.+|+||+||++| .+.|+.+|.+.+|++|+
T Consensus 162 ~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~d~~~l~~~~~~~~~gv~vQyP~~~G~~~~d~~~l~~~~h~~~a 241 (450)
T COG0403 162 KKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDADDLDDLESADDGDVFGVLVQYPNTFGIVEEDLRALIEAAHSAGA 241 (450)
T ss_pred CcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccchhhhhhhccccCeEEEEEecCCCCCccchhHHHHHHHHhhcCC
Confidence 66899999999999999999999999999999998766543 24589999999999999 66789999999999999
Q ss_pred EEEEEecCccccCCCCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccc
Q 001989 328 KVVMATDLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTR 407 (985)
Q Consensus 328 lliV~a~~~~lg~l~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tr 407 (985)
+++|++|+++++++++||+|||||+||++|.||+||+|||||+|||+|+++++|+||||+||+|+|.+|+++|+|+||||
T Consensus 242 l~~v~aDplaL~LL~pPGe~GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTR 321 (450)
T COG0403 242 LVIVAADPLALGLLKPPGEFGADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTR 321 (450)
T ss_pred EEEEEechhHhhccCCccccCCceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC-CeEEcCCCCcceEEEecC-C-
Q 001989 408 EQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG-TVEVQGLPFFDTVKVKCA-D- 484 (985)
Q Consensus 408 e~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~-~- 484 (985)
|||||||||||||||||+|+|++|++|+.++|++|+++++++++++++||+++|++++ |++++.+.+|++|+++++ .
T Consensus 322 EQHIRReKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~~fFdt~~v~~~~~~ 401 (450)
T COG0403 322 EQHIRREKATSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFDHFFDTFTVRVPEEV 401 (450)
T ss_pred HHHHhhhccchhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccccceeeEEEecchhH
Confidence 9999999999999999999999999999999999999999999999999999999662 499987789999999998 4
Q ss_pred HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001989 485 AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 485 ~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~~ 530 (985)
...+.++....||+++.++++.+.+|+||.+|++|||.|+++|...
T Consensus 402 ~~~l~~~~~~~G~~L~~~~~~~~~ia~tEt~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 402 AEALLAAAIAGGINLRRVDADTVLIALTETTTKEDIDALVAAFGGV 447 (450)
T ss_pred HHHHHHHHHhcCCceeeecCCceEEEeecccCHHHHHHHHHHHhhh
Confidence 7777888888899999988889999999999999999999999864
No 7
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=100.00 E-value=1e-98 Score=843.23 Aligned_cols=425 Identities=44% Similarity=0.665 Sum_probs=327.1
Q ss_pred ccCCCCCHHHHHHHHHHhCCCCHHHhhhhcCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCccceecCCCCCCC
Q 001989 100 RRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNT 178 (985)
Q Consensus 100 ~~~~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~~~~~lG~g~y~~ 178 (985)
+||||||++|+++||++||++|+||||+++||+++ ++++++|| +++||.|++||+++|+++|..+.+|+|+|+|+|
T Consensus 1 ~ryi~~t~~~~~~ML~~iG~~sieeL~~~~IP~~i~~~~~~~lp---~~~sE~e~~r~~~~la~kN~~~~~fiG~G~y~~ 77 (429)
T PF02347_consen 1 MRYIPPTDEDIQEMLDAIGVKSIEELFDSDIPEEIRLKKPLNLP---EPLSEYELLRHLERLASKNKSYTSFIGAGSYTH 77 (429)
T ss_dssp -------HHHHHHHHHHCT-SSTGGGG-TTS-GGG-SS-------------HHHHHHHHHHHHTTS--TTS---CTTT--
T ss_pred CCCCCcCHHHHHHHHHhcCCCCHHHHhhhhCCHhhcCCCCCCCC---CCCCHHHHHHHHHHHHhcCCCCCccccccccCc
Confidence 59999999999999999999999999966799999 88899997 679999999999999999999999999999999
Q ss_pred CCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEE
Q 001989 179 HVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTF 258 (985)
Q Consensus 179 ~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~V 258 (985)
++|++|.+++++|+||||+|||||||+|||+||++||||++||+|||||.+|+|+||++||++||++|+.+..++++++|
T Consensus 78 ~~P~~i~~~i~~~~ef~TaYtPYQpEisQG~Lq~lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~v 157 (429)
T PF02347_consen 78 YVPAVIDRNILSRPEFYTAYTPYQPEISQGRLQALFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRATKRKRNKV 157 (429)
T ss_dssp ---HHHHH-HHCCHHCCCS-STTSGGGBHHHHHHHHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EE
T ss_pred eeChhhcCccccChhhhccCCCCCcHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHhcccCCcEE
Confidence 99999997799999999999999999999999999999999999999999999999999999999999988875566799
Q ss_pred EEcCCCChhHHHHHHHhhcCCCeEEEEeCchhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCcc
Q 001989 259 IIASNCHPQTIDICITRADGFDIKVVVSDLKDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLA 337 (985)
Q Consensus 259 lv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~ 337 (985)
++++..||+++.++++|++..|++++.++.++-.. .++++++|+||+||++|.++|+++|++++|++|+++++++|+++
T Consensus 158 lv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d~~~~a~v~vq~Pn~~G~~ed~~~i~~~~h~~gal~~~~ad~~a 237 (429)
T PF02347_consen 158 LVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDGTTDDDDTAAVMVQNPNTFGVFEDIKEIADIAHAAGALVIVGADPNA 237 (429)
T ss_dssp EEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTCSB-STTEEEEEEESS-TTSB--THHHHHHHHHHTT-EEEECGGCCG
T ss_pred EEcCCcChhhHHHHHHhhhhCCeEEEEecccccCCccccCeEEEEeecCCCCceEeeHHHHHHHHHHcCCEEEEecCHHH
Confidence 99999999999999999999999999998764322 25799999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccC
Q 001989 338 LTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKAT 417 (985)
Q Consensus 338 lg~l~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~at 417 (985)
++++++|++|||||+|+++|+||+||++||||+|||+|+++++|+||||+||.|+|.+|+++|+|+||||||||||||||
T Consensus 238 L~~l~~Pge~GADI~vg~~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAt 317 (429)
T PF02347_consen 238 LGGLKSPGEYGADIVVGEHQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKAT 317 (429)
T ss_dssp CCTC--GGGGT-SEEEECCTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCST
T ss_pred HhCcCChhhcCccEEeeCCCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC--HHHHHHHHHHc
Q 001989 418 SNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKI 495 (985)
Q Consensus 418 sni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--~~~v~~~L~~~ 495 (985)
|||||||++++++|++|+.++|++||++++++++.+|+|++++|+++.++.+.+..++++|....+. ..++.+++...
T Consensus 318 SNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~~~~f~e~v~~~~~~~~~~~l~~~~~~~ 397 (429)
T PF02347_consen 318 SNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKIYGLPFDNPFFFEFVVVFSKDKEVEELLKRGIEG 397 (429)
T ss_dssp T---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBECSSSSSBSSEEEEESS-HHHHHHHHTT---
T ss_pred hhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCceeeeeecCCcHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999742443344566666666554 33455555555
Q ss_pred CceeeeecCCeEEEEeccCCCHHHHHHHHHHH
Q 001989 496 EMNLRVVDSNTVTASFDETTTLEDVDKLFIVF 527 (985)
Q Consensus 496 GI~~~~~~~~~lris~t~~~t~edId~li~aL 527 (985)
|+.++....+++++|+||.+|+||||+|+++|
T Consensus 398 gl~~~~~~~~~~li~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 398 GLNLRYPDDGALLICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp -EEEGGG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred CCCccccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence 65565555679999999999999999999876
No 8
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-79 Score=659.05 Aligned_cols=414 Identities=59% Similarity=1.000 Sum_probs=379.8
Q ss_pred CCCCCccccCC-----CCHHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHH
Q 001989 557 PYLTHPVFNKY-----HTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQ 631 (985)
Q Consensus 557 ~~~~~p~~~~~-----~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~ 631 (985)
.++++|+|+.. +||.|++||+.+|+++|+.++.+|++|||||||+|+..++.++.|++|.+.|||+|.++.||++
T Consensus 29 ~~L~~~~~r~~~~~Pe~SE~e~~Rh~~rLs~kn~avd~~m~PLGSCTMK~Np~~e~~~~~~p~f~~iHP~~pe~~vqG~l 108 (496)
T COG1003 29 EYLPHPVFRRYPPLPEHSETEMVRHYTRLSQKDLAVDRGMIPLGSCTMKLNPKAEMKPATWPEFANIHPFQPEEQVQGYL 108 (496)
T ss_pred hhcCcHHhhcCCCCccccHHHHHHHHHHHHhcccccccCccCCcccccccCchhhcccccccchhhcCCCCChHHHHHHH
Confidence 55666666666 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA 711 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~ 711 (985)
+++.++++||++++|+|.+++++++|++|+++++++||+|++++|...|++||||+++||+||++|.+.|++|+.|++++
T Consensus 109 ~li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G~~VV~V~~~~ 188 (496)
T COG1003 109 ELIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAGFKVVVVKCDE 188 (496)
T ss_pred HHHHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhcCceEEEEecCC
Confidence 99999999999999999999999999999999999999999999977899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeCC
Q 001989 712 KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNL 791 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~ 791 (985)
+|.+|+|+|++++. ++++++|+||||++|+|+.+|.||++++|++|++|++|||+.+++.|+.+||++|+||+++++
T Consensus 189 ~G~VDlddLk~k~~---~~~AalMiTnPsT~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~G~DV~HlNL 265 (496)
T COG1003 189 NGNVDLDDLRAKAE---DNLAALMITNPSTLGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDMGFDVVHLNL 265 (496)
T ss_pred CCCccHHHHHHHhc---cceeEEEeccCcccccchhhHHHHHHHHHHcCCEEEecCcchhhhhccccccccccceEEeec
Confidence 99999999999998 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCceEEEEEcccccCcCCCCccc-cCCCC-CCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHH
Q 001989 792 HKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVV-STGGI-PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 792 hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g-~~~~~-~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~ 869 (985)
||||++|||+||||+|.|++++++.+++|+...- ...++ ......+. ....++++|+++.+..+|+||..||.+|++
T Consensus 266 HKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s-~g~~~a~~Gs~~il~~a~~YI~~mG~~GL~ 344 (496)
T COG1003 266 HKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKS-IGVSAAPYGSASILPIAWAYIRMMGADGLK 344 (496)
T ss_pred ccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCcc-ceeeccccCcchHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999974210 00110 00111122 234457899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC--CCCEEEE
Q 001989 870 EASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP--VPGTLMI 947 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p--~~~~lri 947 (985)
+..+....|++|++++|+..++++|.+.. .+.|+|+++.+++++..|++..||+|+|.++|+++++++|| |.++|||
T Consensus 345 ~ase~AvLNANYia~rL~~~y~~~y~~~~-~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD~GfHaPT~~FPliV~~tLMI 423 (496)
T COG1003 345 QASEVAVLNANYIARRLKGYYPVPYTGEN-RVAHECILDARPLKKETGVRALDVAKRLLDYGFHAPTMYFPLIVAGTLMI 423 (496)
T ss_pred HHHHHHHHhHHHHHHHhhhcCccccCCCC-cceeEEEeechHhHhhcCCcHHHHHHHHHhcCCCCCcccCccccccceee
Confidence 99999999999999999988898886643 78999999998777778999999999999999999999999 8999999
Q ss_pred eccCCCCHHHHHHHHccCChhHHHHhhccC
Q 001989 948 EPTESESKSWTGIVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 948 s~t~~~t~eeId~~~~~~~l~~~~~~~~~~ 977 (985)
.|||+.+++|+|+ ||+++.++.++.++.
T Consensus 424 EPTEsEsk~eLDr--f~dami~I~~Ea~~~ 451 (496)
T COG1003 424 EPTESESKEELDR--FIDAMIAIREEADAV 451 (496)
T ss_pred cCCCCCCHHHHHH--HHHHHHHHHHHHHhc
Confidence 9999999999999 999999999887663
No 9
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=100.00 E-value=1.2e-57 Score=511.77 Aligned_cols=399 Identities=34% Similarity=0.508 Sum_probs=286.3
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCHHhhhhhhhccCCCCccCCCCCCCCccccCCCCHHHHHHHHHHHhccccCccccccc
Q 001989 514 TTTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIP 593 (985)
Q Consensus 514 ~~t~edId~li~aL~~~~~~~~~~~~l~~~~~~~ip~~~~~~~~~~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~ 593 (985)
-+|++|++.+++.++.. |+++|+. ++||+++|+++++ .+| +++||.|++|++++|+++|.. ..+.++
T Consensus 5 ~~t~~~~~~ML~~iG~~-----sieeL~~---~~IP~~i~~~~~~-~lp---~~~sE~e~~r~~~~la~kN~~-~~~fiG 71 (429)
T PF02347_consen 5 PPTDEDIQEMLDAIGVK-----SIEELFD---SDIPEEIRLKKPL-NLP---EPLSEYELLRHLERLASKNKS-YTSFIG 71 (429)
T ss_dssp ---HHHHHHHHHHCT-S-----STGGGG----TTS-GGG-SS--------------HHHHHHHHHHHHTTS---TTS---
T ss_pred CcCHHHHHHHHHhcCCC-----CHHHHhh---hhCCHhhcCCCCC-CCC---CCCCHHHHHHHHHHHHhcCCC-CCcccc
Confidence 36899999999999998 8999983 4799999999885 677 679999999999999999988 567788
Q ss_pred ccccccCCCccccccccccccccc-cCCCCchhhhhhHHHHHHHHHHHHHHHhCCCcc--ceecCcHHHHHHHHHHHHHH
Q 001989 594 LGSCTMKLNATTEMMPVTWPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTITGFDSF--SLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 594 lG~~t~~~~~~~~~~~~~~~~f~~-~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~--~~~~~sGa~a~~a~l~air~ 670 (985)
+|+|++++|+......+++++|++ |||||| |++||.+|+++|+|+++|+++|+|.+ ++++++++.|+ +++|++|.
T Consensus 72 ~G~y~~~~P~~i~~~i~~~~ef~TaYtPYQp-EisQG~Lq~lfe~Qs~i~eLTGmdvaNaSlyd~atA~aE-a~~ma~r~ 149 (429)
T PF02347_consen 72 AGSYTHYVPAVIDRNILSRPEFYTAYTPYQP-EISQGRLQALFEYQSMICELTGMDVANASLYDGATAAAE-AMLMAVRA 149 (429)
T ss_dssp CTTT-----HHHHH-HHCCHHCCCS-STTSG-GGBHHHHHHHHHHHHHHHHHHTSSEE-SEBSSCCHHHHH-HHHHHHHH
T ss_pred ccccCceeChhhcCccccChhhhccCCCCCc-HHHHHHHHHHHHHHHHHHHhhCCCccCCCCCChhHHHHH-HHHHHHHh
Confidence 899999999998887789999987 999999 99999999999999999999999985 57788888887 88888875
Q ss_pred HHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccc
Q 001989 671 YHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYE 746 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~ 746 (985)
. + .++++|+++...|+.+... +...|++++.+|.++++..| + +++++|++++||++|+++
T Consensus 150 ~---~--~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~~~d--------~---~~~a~v~vq~Pn~~G~~e 213 (429)
T PF02347_consen 150 T---K--RKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDGTTD--------D---DDTAAVMVQNPNTFGVFE 213 (429)
T ss_dssp H---T--T---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTCSB---------S---TTEEEEEEESS-TTSB--
T ss_pred c---c--cCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccCCcc--------c---cCeEEEEeecCCCCceEe
Confidence 3 1 2356899999999888774 45689999999998877777 4 899999999999999999
Q ss_pred cCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCcccc
Q 001989 747 EGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVS 826 (985)
Q Consensus 747 ~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~ 826 (985)
|+++|++++|++|+++++ ++++++++++.+|+++|+||++++ ||+|++|+++|||++|++++++++.+++||+++|.
T Consensus 214 -d~~~i~~~~h~~gal~~~-~ad~~aL~~l~~Pge~GADI~vg~-~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~ 290 (429)
T PF02347_consen 214 -DIKEIADIAHAAGALVIV-GADPNALGGLKSPGEYGADIVVGE-HQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQ 290 (429)
T ss_dssp -THHHHHHHHHHTT-EEEE-CGGCCGCCTC--GGGGT-SEEEEC-CTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEE
T ss_pred -eHHHHHHHHHHcCCEEEE-ecCHHHHhCcCChhhcCccEEeeC-CCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecc
Confidence 799999999999999999 999999999999999999999766 89999999999999999999999999999999987
Q ss_pred CCCC-C------------CC-CCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCe
Q 001989 827 TGGI-P------------AP-EKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPI 892 (985)
Q Consensus 827 ~~~~-~------------~~-~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l 892 (985)
+.|. + +| +|+++|+|||++ +++.+.+|++|+.++|++|++++++++..+++|++++|++.+.+
T Consensus 291 t~D~~G~~~~~ltLqtREQHIrReKAtSNIctn---qaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~ 367 (429)
T PF02347_consen 291 TKDADGKRAFVLTLQTREQHIRREKATSNICTN---QALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKIYGL 367 (429)
T ss_dssp EEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBE
T ss_pred cccccccceeeeccccccccccccchhhhhhhh---HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 6543 2 12 478999999986 77777889999999999999999999999999999999875444
Q ss_pred eecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC-CCCCCCCEEEEeccCCCCHHHHHHH
Q 001989 893 LFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT-MSWPVPGTLMIEPTESESKSWTGIV 961 (985)
Q Consensus 893 ~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~-~~~p~~~~lris~t~~~t~eeId~~ 961 (985)
.+.+ .+++++++... + . ..+. .|.++++..+. ..++..+.+.||+||.+|+||||++
T Consensus 368 ~~~~---~~f~e~v~~~~------~-~-~~~~-~l~~~~~~~gl~~~~~~~~~~li~~TE~~t~edid~l 425 (429)
T PF02347_consen 368 PFDN---PFFFEFVVVFS------K-D-KEVE-ELLKRGIEGGLNLRYPDDGALLICVTETRTKEDIDRL 425 (429)
T ss_dssp CSSS---SSBSSEEEEES------S---HHHH-HHHHTT----EEEGGG-SSEEEEE--TT--HHHHHHH
T ss_pred ccCC---CCceeeeeecC------C-c-HHHH-HHHHHHHhcCCCccccCCCeEEEEccCCCCHHHHHHH
Confidence 4432 35556666654 1 2 3333 36677666541 2234467999999999999999993
No 10
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=100.00 E-value=1.2e-55 Score=519.23 Aligned_cols=424 Identities=38% Similarity=0.622 Sum_probs=377.1
Q ss_pred cccCCCCCHHHHHHHHHHhCCCCHHHhhhhcCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCc---cceecCCC
Q 001989 99 ARRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQKLASMNKV---YKSFIGMG 174 (985)
Q Consensus 99 ~~~~~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~---~~~~lG~g 174 (985)
.++|||++++|+++||+++|++|+||||+ +||+++ ++.+++|| +++||.|+++++.+++++|.. ..+++|.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~lp---~~~~~~~v~~~~~~~~~~~~~~~~~~~~lg~g 76 (447)
T PRK00451 1 GMPYIPHTEEDIREMLDAIGVKSIDELFA-DIPEELRLKRPLDLP---PGLSEMELLRHLRELAAKNKTAEEYPSFLGAG 76 (447)
T ss_pred CCCCCCCCHHHHHHHHHHhCCCCHHHHHH-hCCHHHHhCCCCCCC---CCCCHHHHHHHHHHHHhcCCCcCcCcccCccc
Confidence 37999999999999999999999999995 599999 77778887 567999999999999987754 56799999
Q ss_pred CCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCC
Q 001989 175 YYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGK 254 (985)
Q Consensus 175 ~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~ 254 (985)
++++.+|..+. .++.+.+|+++|+||+++.++|.++++.|+++++++++|++.+++++++|+|++++++++++... +
T Consensus 77 ~~~~~~p~~~~-~~~~~~~~~~~y~~~~~~~~~g~~~~~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~~--~ 153 (447)
T PRK00451 77 AYDHYIPAVVD-HIISRSEFYTAYTPYQPEISQGTLQAIFEYQTMICELTGMDVANASMYDGATALAEAALMAVRIT--K 153 (447)
T ss_pred ccCCcCcHHHH-HHHhchhHHHhcCCCCCccchHHHHHHHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHhc--C
Confidence 99999999985 77788899999999999999999999999999999999999999999999999999998887544 7
Q ss_pred CCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch-------hhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCC
Q 001989 255 KKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK-------DIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANG 326 (985)
Q Consensus 255 g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~-------~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~g 326 (985)
|++|++++..|+++..+++.+++..|++++.++.+ ++++ ++++|++|++++||++|.+.|+++|+++||++|
T Consensus 154 g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~d~~~l~~~i~~~t~~v~l~~pn~tG~v~~l~~I~~~a~~~~ 233 (447)
T PRK00451 154 RKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDGVTDLEALEAAVDDDTAAVVVQYPNFFGVIEDLEEIAEIAHAGG 233 (447)
T ss_pred CCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCCCCCHHHHHHhcCCCeEEEEEECCCCCCeeCCHHHHHHHHHHCC
Confidence 89999999999999999988777789999988664 3555 788999999999999999999999999999999
Q ss_pred cEEEEEecCccccCCCCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccc
Q 001989 327 VKVVMATDLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQT 406 (985)
Q Consensus 327 alliV~a~~~~lg~l~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~t 406 (985)
++++|+.|..++|.+..++++|+|++++++|+|+.|+.+|||++||+++++++++.+|++++|++.+..++.+|.+.++.
T Consensus 234 ~~~iv~~d~~~~g~~~~~~~~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 313 (447)
T PRK00451 234 ALFIVGVDPVSLGLLKPPGEYGADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQA 313 (447)
T ss_pred CEEEEEcChHHhccCCCcccCCCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccc
Confidence 99998666778888877899999999999999999999999999999999999999999999998766677788888888
Q ss_pred ccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC-H
Q 001989 407 REQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-A 485 (985)
Q Consensus 407 re~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~ 485 (985)
+++++||+++|+|+|++.++.++.++.++.+++++|++++.+++.+++++++++|+++++++++..+++..+.++++. .
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~v~~~~~~ 393 (447)
T PRK00451 314 REQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVELFDGPFFNEFVVRLPKPA 393 (447)
T ss_pred cccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEecCCCeEEEEEEecCCCH
Confidence 999999999999999998888888887888899999999999999999999999999965988755556666666543 7
Q ss_pred HHHHHHHHHcCceee----eec---CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 486 HAIASAAYKIEMNLR----VVD---SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 486 ~~v~~~L~~~GI~~~----~~~---~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++.++|.++||... ... .+.+|+|+++++|++|||+|+++|.+
T Consensus 394 ~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~ 444 (447)
T PRK00451 394 EEVNEALLEKGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGE 444 (447)
T ss_pred HHHHHHHHhcCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 899999999988642 111 36899999999999999999999963
No 11
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=100.00 E-value=9.4e-55 Score=527.03 Aligned_cols=403 Identities=19% Similarity=0.250 Sum_probs=342.6
Q ss_pred CCHHHHHHHHHHhC-CC--CHH-----HhhhhcCCCcc-ccCCCCCC-CCCCCCCHHHHHHHHHHHhcCCCcc-ceecCC
Q 001989 105 ATPEDQAKMSELVG-LD--NLD-----SLIDATVPKSI-RIDSMKFS-KFDEGLTESQMIEHMQKLASMNKVY-KSFIGM 173 (985)
Q Consensus 105 ~~~~~~~~ml~~~g-~~--~~~-----~l~~~~ip~~~-~~~~~~lp-~~~~~~se~e~~~~~~~l~~~n~~~-~~~lG~ 173 (985)
+|++|++..++.++ .+ .++ +-....||+.+ |+.++.+| .|..-.||.|++|||++|++||... .+|+|+
T Consensus 413 ~t~~di~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~f~~~~sE~e~~r~~~~L~~kn~~~~~~fi~l 492 (939)
T TIGR00461 413 TTKADVENLLKVFDGEDNHGLSSQFLSEDVSNSFPREFQRTDEILRNEVFNMYHSETEMLRYLHRLESKDLALNNSMIPL 492 (939)
T ss_pred CCHHHHHHHHHHhcCCCccccchhhhhhhhcccCchhhhccCcccCCcccccCCCHHHHHHHHHHHHhcCCCccccCCCC
Confidence 68999999999995 32 111 11222499999 88877776 1122239999999999999999874 589999
Q ss_pred CCCCCCCcHHHHHHHHhCCccccccCCChhh-HhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHH-HHHHhhhh
Q 001989 174 GYYNTHVPPVILRNIMENPAWYTQYTPYQAE-IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEA-MAMCNNIQ 251 (985)
Q Consensus 174 g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e-~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea-~~~a~~~~ 251 (985)
|.|.|.+|+.+..-..++++|+| ||||||| .+||++|+++|+|+++|+++||| ++|+|+++++.+|+ .+|+.|..
T Consensus 493 Gsctmk~na~v~~l~~s~~ef~t-~hPyqPe~~sqG~lq~i~elq~~l~eltGmd--~~Sl~p~aGA~gE~agL~aiR~y 569 (939)
T TIGR00461 493 GSCTMKLNATAEMMPITWPEFSN-IHPFQPSNQVEGYQELIAQLEKWLCSITGFD--AISLQPNSGAQGEYAGLRVIRSY 569 (939)
T ss_pred ccCCCccCHHHHHHHhcchhhcC-cCCCCchHHhHHHHHHHHHHHHHHHHHHCCC--CcccCCchHHHHHHHHHHHHHHH
Confidence 99999999999854489999999 9999999 99999999999999999999999 59999999999997 66776641
Q ss_pred ---c--CCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cC---CCEeEEEEEcCCCCeeecc
Q 001989 252 ---K--GKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KS---GDVCGVLVQYPGTEGEVLD 314 (985)
Q Consensus 252 ---~--~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~---~~t~~V~v~~pn~~G~v~d 314 (985)
+ +++++|++|.+.|.++-..++ ..|+++++++. ++|++ ++ ++|++|++|+||++|.++|
T Consensus 570 ~~~rge~~R~~vlip~saHgtnPasa~----~~G~~Vv~V~~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst~G~~e~ 645 (939)
T TIGR00461 570 HESRGENHRNICLIPVSAHGTNPASAA----MAGMQVVPVNCDQDGNIDLVDLKNKAEQHGDELAAVMVTYPSTHGVFEP 645 (939)
T ss_pred HHhcCCCCCCEEEEEccccCcCHHHHH----HCCCEEEEeccCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCcCceecc
Confidence 1 256789999999966544432 45888888764 45666 65 5899999999999999987
Q ss_pred -HHHHHHHHHhCCcEEEE-EecCccccCCCCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeee
Q 001989 315 -YGDFIKNAHANGVKVVM-ATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVS 391 (985)
Q Consensus 315 -i~~I~~~a~~~galliV-~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t 391 (985)
|++|+++||++|++++| ++|+.+++.+.+|+++||||++++. |+|++|+++||||+|++++++.+.++||++.+|.+
T Consensus 646 ~I~eI~~iah~~G~~v~VDgAq~~al~~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t 725 (939)
T TIGR00461 646 TIQHACDIVHSFGGQVYLDGANMNAQVGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSM 725 (939)
T ss_pred cHHHHHHHHHHcCCEEEEEecChhhCCCCCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCccccc
Confidence 99999999999999999 7888888888999999999999998 88999999999999999999999999999998865
Q ss_pred ecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC
Q 001989 392 IDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG 471 (985)
Q Consensus 392 ~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~ 471 (985)
.|.+| |+|||| ++||+|++++++++.+.+|+.++|++|++++.+....+|+|++++|++ + ++++.
T Consensus 726 ~d~~g----------req~Ig---a~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~-~-~~~l~ 790 (939)
T TIGR00461 726 ITGIG----------GSKSIG---SVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD-H-YPILF 790 (939)
T ss_pred ccCCC----------Cccccc---cccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc-c-Ccccc
Confidence 44322 678887 789999999999999999999999999999999999999999999988 4 77763
Q ss_pred C----CCcceEEEecC-------C-HHHHHHHHHHcCceeeee---cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 472 L----PFFDTVKVKCA-------D-AHAIASAAYKIEMNLRVV---DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 472 ~----~~~~~~~~~~~-------~-~~~v~~~L~~~GI~~~~~---~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+ +++++|+++.+ . +.+|+++|.++||..... ..+.+++++||.+|++|||+|+++|..
T Consensus 791 ~~~~~~~~hEfv~~~~~~~~~~g~~~~dIakrL~d~G~hapt~~~pv~g~lmiepTE~eskeelD~f~~al~~ 863 (939)
T TIGR00461 791 VGTLKHVAHECILDLRPLKAKTGIEAIDVAKRLQDYGFHAPTLSFPVPGTLMVEPTESESLEELDRFCDAMIA 863 (939)
T ss_pred cCCCCceeEEEEEeccchhhhcCCCHHHHHHHHHhCCeeccccCCccCCeEEEEeeccCCHHHHHHHHHHHHH
Confidence 2 57899999876 2 899999999999976543 247999999999999999999999974
No 12
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=100.00 E-value=7.3e-53 Score=496.51 Aligned_cols=379 Identities=20% Similarity=0.299 Sum_probs=321.5
Q ss_pred hhcCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCc-cceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhh
Q 001989 127 DATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQKLASMNKV-YKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAE 204 (985)
Q Consensus 127 ~~~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~-~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e 204 (985)
+++||+++ ++++++|| + +||.|+++|+++|+++|.. ..+|+|.|++...+|+.+.++++++++| ++|||||||
T Consensus 31 ~~~ip~~~~~~~~~~~~---~-~se~~~~~~~~~l~~~n~~~~~~~~g~G~~~~~~~p~i~~~~~~~~~~-~~~tpYq~e 105 (481)
T PRK04366 31 ESLLPEELLRKEPPELP---E-VSELEVVRHYTRLSQKNYGVDTGFYPLGSCTMKYNPKINEKVARLPGF-AELHPLQPE 105 (481)
T ss_pred cccCCHHHhcCCCCCCC---C-CCHHHHHHHHHHHHhcCCCCCcceecCcccCCCCCHHHHHHHHhCcch-hcCCCCCCh
Confidence 45799999 88889998 4 9999999999999999987 5699999976666777777899999998 699999999
Q ss_pred -HhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHH-hh---hhc--CCCCEEEEcCCCChhHHHHHHHhhc
Q 001989 205 -IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMC-NN---IQK--GKKKTFIIASNCHPQTIDICITRAD 277 (985)
Q Consensus 205 -~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a-~~---~~~--~~g~~Vlv~~~~H~s~~~~~~~~a~ 277 (985)
++||+++.++++|+++++++|++ ++++++++++..+++.++ .+ ..+ +++++||+++..||++..+++
T Consensus 106 ~~sqG~lel~~~~~~~la~l~G~~--~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~---- 179 (481)
T PRK04366 106 ETVQGALELMYELQEWLKEITGMD--AVTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAA---- 179 (481)
T ss_pred hhhhHHHHHHHHHHHHHHHHhCCC--ceEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHHHH----
Confidence 99999999999999999999997 588888877766665442 22 121 134599999999999998864
Q ss_pred CCCeEEEEeCc--------hhhhc-cCCCEeEEEEEcCCCCeee-ccHHHHHHHHHhCCcEEEE-EecCcc-ccCCCCCC
Q 001989 278 GFDIKVVVSDL--------KDIDY-KSGDVCGVLVQYPGTEGEV-LDYGDFIKNAHANGVKVVM-ATDLLA-LTILKPPG 345 (985)
Q Consensus 278 ~~gi~v~~v~~--------~~l~~-l~~~t~~V~v~~pn~~G~v-~di~~I~~~a~~~galliV-~a~~~~-lg~l~~~~ 345 (985)
..|++++.++. ++|++ ++++|++|++++||++|.+ .|+++|+++||++|++++| ++++.+ +|.+ +|+
T Consensus 180 ~~G~~vv~v~~~~~~~~D~e~L~~~i~~~t~~V~v~~Pn~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~-~~~ 258 (481)
T PRK04366 180 MAGFKVVEIPSNEDGLVDLEALKAAVGEDTAALMLTNPNTLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKA-RPG 258 (481)
T ss_pred HcCCEEEEeecCCCCCcCHHHHHhhcccCCeEEEEeCCCCccccchHHHHHHHHHHHcCCEEEEEecChhhhcccC-Ccc
Confidence 46888888765 34656 7889999999999999988 5899999999999999999 677666 4444 789
Q ss_pred cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchh
Q 001989 346 ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQ 424 (985)
Q Consensus 346 ~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~ 424 (985)
++|||++++++ |+|++|+++||||+|++++++++.++||++++|+ +|+ +|++++| |+|||||+++|+ ++
T Consensus 259 ~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~----~g~-~~~l~~~-r~~~i~r~~a~t----~~ 328 (481)
T PRK04366 259 DMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEK----DGD-RYRLDYD-RPKSIGRVRAFY----GN 328 (481)
T ss_pred ccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeec----cCC-ceeeccc-ccccCCCccccc----Cc
Confidence 99999999999 9999999999999999999999999999999984 245 6999998 999999999885 35
Q ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc-CCCCcceEEEecC-----C--HHHHHHHHHHcC
Q 001989 425 ALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ-GLPFFDTVKVKCA-----D--AHAIASAAYKIE 496 (985)
Q Consensus 425 ~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~-----~--~~~v~~~L~~~G 496 (985)
.+.++.+..|+.++|++|+++++++++++++||+++|+++ +++. ..++++++.|..+ + +.++.++|.++|
T Consensus 329 ~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~L~~~G 406 (481)
T PRK04366 329 FGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI--YDLPYDRPCMHEFVLSGKKLKETGVRTLDIAKRLLDYG 406 (481)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--CcccCCCCeeEEEEEECccccccCCCHHHHHHHHHHCC
Confidence 6888888889999999999999999999999999999986 3333 3456677777542 2 889999999999
Q ss_pred ceeee-----ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 497 MNLRV-----VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 497 I~~~~-----~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
|.++. ...+++|+|+|++||++|||+|+++|.+
T Consensus 407 i~~~~~~~p~~~~~~l~is~~e~~t~edid~l~~~l~~ 444 (481)
T PRK04366 407 FHPPTIYFPLIVPEALMIEPTETESKETLDAFIAAMKQ 444 (481)
T ss_pred ccCCccccccccCCeEEEcccCCCCHHHHHHHHHHHHH
Confidence 98752 1257899999999999999999999975
No 13
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-50 Score=435.64 Aligned_cols=407 Identities=23% Similarity=0.324 Sum_probs=330.1
Q ss_pred CHHHHHHHHHHHhCCCCCCCCHHhhhhhhhccCCCCccCC-CCCCCCccccCCCCHHHHHHHHHHHhccccCcccccccc
Q 001989 516 TLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRE-SPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPL 594 (985)
Q Consensus 516 t~edId~li~aL~~~~~~~~~~~~l~~~~~~~ip~~~~~~-~~~~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~l 594 (985)
+.+|.+.++++++.+ |+|+||. ++||+++|.+ ..++.+ ++++||.|+++++++++++|..+ .+.+..
T Consensus 15 ~~~d~~~ML~~iG~~-----Sld~L~~---~~IP~~Ir~~~~~~~~~---~~~~sE~e~l~~l~~ia~kN~~~-~sfiG~ 82 (450)
T COG0403 15 SSADQQEMLAAIGVS-----SLDELFS---QDIPPSIRKKLDTLLPL---PKPLSEYEALAELKEIASKNKVF-TSFIGA 82 (450)
T ss_pred ChHHHHHHHHHcCCC-----CHHHHhh---ccCCHHHHhcccccCCC---CCCCCHHHHHHHHHHHHhcCchh-hhhccC
Confidence 349999999999998 8999984 4799999876 122233 47889999999999999999743 223334
Q ss_pred cccccCCCccccccccccccccc-cCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccc--eecCcHHHHHHHHHHHHHHH
Q 001989 595 GSCTMKLNATTEMMPVTWPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFS--LQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 595 G~~t~~~~~~~~~~~~~~~~f~~-~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~--~~~~sGa~a~~a~l~air~~ 671 (985)
|++..++|+......+++++|++ |+|||| |++||.+|++.|+|+++++|+|++.++ ++..+++.|+ |++|+.|.
T Consensus 83 GyY~~~~P~vI~rnile~pewyTaYTPYQp-EISQGrLqaLfefQtlv~dLTGm~VANASm~DeaTAaAE-Am~ma~r~- 159 (450)
T COG0403 83 GYYDTYTPPVILRNILENPEWYTAYTPYQP-EISQGRLEALFEFQTLVADLTGLDVANASMLDEATAAAE-AMLMAKRV- 159 (450)
T ss_pred cccCCcCcHHHHHHhhcCccccccCCCCch-hhhhHHHHHHHHHHHHHHHHhCCCcccchhhhhHHHHHH-HHHHHHHh-
Confidence 45667777777767789999999 999999 999999999999999999999999864 5555555555 88887764
Q ss_pred HHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCcccccc
Q 001989 672 HKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEE 747 (985)
Q Consensus 672 ~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~ 747 (985)
.+ .++++++++...|+.+-.. ++..|++++.++.+ |+++|+++ + ..++.+|++++||++|.+.+
T Consensus 160 --~k--~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-----d~~~l~~~-~--~~~~~gv~vQyP~~~G~~~~ 227 (450)
T COG0403 160 --TK--KKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-----DLDDLESA-D--DGDVFGVLVQYPNTFGIVEE 227 (450)
T ss_pred --hc--CcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-----hhhhhhhc-c--ccCeEEEEEecCCCCCccch
Confidence 12 2468899999877655443 34678999988875 88899888 4 15899999999999995555
Q ss_pred CHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccC
Q 001989 748 GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVST 827 (985)
Q Consensus 748 di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~ 827 (985)
|+++|.+.+|++|++++| ++.+.+++.+..||++|+||+++++ +-|++|++||||++|++++++++.+.+||+++|.+
T Consensus 228 d~~~l~~~~h~~~al~~v-~aDplaL~LL~pPGe~GADIvvG~~-QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S 305 (450)
T COG0403 228 DLRALIEAAHSAGALVIV-AADPLALGLLKPPGEFGADIVVGSA-QRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVS 305 (450)
T ss_pred hHHHHHHHHhhcCCEEEE-EechhHhhccCCccccCCceEEecC-cccCCCcCCCCcceeeeeEhHhHhhcCCCceeeee
Confidence 899999999999999999 8888899999999999999999998 56999999999999999999999999999999987
Q ss_pred CCC-C------------CC-CCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc---cC
Q 001989 828 GGI-P------------AP-EKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---HY 890 (985)
Q Consensus 828 ~~~-~------------~~-~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~---g~ 890 (985)
.|. + +| +|+|+|+|||++ +++.+.+|..|+.++|++|++++++++++++.|++++|++ ++
T Consensus 306 ~D~~G~~A~rLaLQTREQHIRReKATSNICTn---QaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~ 382 (450)
T COG0403 306 VDAAGKRAFRLALQTREQHIRREKATSNICTN---QALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGV 382 (450)
T ss_pred ecCCCCchhhhhHHHHHHHHhhhccchhhhHH---HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCce
Confidence 654 2 22 579999999986 7888888899999999999999999999999999999995 45
Q ss_pred CeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 891 PILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 891 ~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
++.. ..+|.++.++++ ......+.++....|+..+... +..+.|+++|.+|++||+. ++.++..
T Consensus 383 ~~~~----~~fFdt~~v~~~------~~~~~~l~~~~~~~G~~L~~~~---~~~~~ia~tEt~t~~~i~~--l~~~~~~ 446 (450)
T COG0403 383 ELVF----DHFFDTFTVRVP------EEVAEALLAAAIAGGINLRRVD---ADTVLIALTETTTKEDIDA--LVAAFGG 446 (450)
T ss_pred Eecc----ccceeeEEEecc------hhHHHHHHHHHHhcCCceeeec---CCceEEEeecccCHHHHHH--HHHHHhh
Confidence 5543 257888888875 1224455555555666665443 3689999999999999999 5555543
No 14
>PRK12566 glycine dehydrogenase; Provisional
Probab=100.00 E-value=6.4e-50 Score=481.09 Aligned_cols=392 Identities=17% Similarity=0.251 Sum_probs=326.0
Q ss_pred CCHHHHHHHHHHhC-CC---CHHHh----hhhcCCCcc-ccCC-CCCCCCCCCCCHHHHHHHHHHHhcCCCc---cceec
Q 001989 105 ATPEDQAKMSELVG-LD---NLDSL----IDATVPKSI-RIDS-MKFSKFDEGLTESQMIEHMQKLASMNKV---YKSFI 171 (985)
Q Consensus 105 ~~~~~~~~ml~~~g-~~---~~~~l----~~~~ip~~~-~~~~-~~lp~~~~~~se~e~~~~~~~l~~~n~~---~~~~l 171 (985)
.|.+|+++.++.++ .+ +.+.+ +...||+.+ |+.+ +.+|.|...+||.|++|||++|++||.. ...||
T Consensus 426 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~~~~~p~f~~~~SE~el~r~~~~La~kn~~~~~~~~~L 505 (954)
T PRK12566 426 CDEATVARLFDIFLGADHGLDVAALDQGALAEGIPAVLQRRTAYLQHPVFNAHHSETEMLRYLKQLENKDLALNQSMIPL 505 (954)
T ss_pred CCHHHHHHHHHHhcCCCcccchhhhccccccccCchhhhcCCccccCcccccCCCHHHHHHHHHHHHhcCcCcccCcccC
Confidence 46899999999994 32 12222 122499999 7776 6678777889999999999999999986 34699
Q ss_pred CC-----CCCCCCCcHHHHHHHHhCCccccccCCChh-hHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHH-HH
Q 001989 172 GM-----GYYNTHVPPVILRNIMENPAWYTQYTPYQA-EIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAE-AM 244 (985)
Q Consensus 172 G~-----g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~-e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~e-a~ 244 (985)
|+ |.|.|++|+ +++||+|. ||||| |.+||+||.++|+|+++|+||||+. +|+++++++.+| |.
T Consensus 506 GsCTmK~n~~~~~~p~-------s~~eF~t~-hPyqp~e~sQG~lq~i~elq~~l~eLtGmd~--~Sl~p~sGA~gE~A~ 575 (954)
T PRK12566 506 GSCTMKLNATSEMIPI-------TWPEFAQL-HPFAPREQAEGYRAMIDELEAWLCAITGFDA--ICMQPNSGAQGEYAG 575 (954)
T ss_pred cccccCcCcHHhhhcc-------cchhhhcC-CCCCchhhhcCHHHHHHHHHHHHHHHHCCCe--EeecCCchHHHHHHH
Confidence 99 999999998 68999999 99999 7999999999999999999999999 699999999999 88
Q ss_pred HHHhhh-h--c--CCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cC---CCEeEEEEEcCC
Q 001989 245 AMCNNI-Q--K--GKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KS---GDVCGVLVQYPG 307 (985)
Q Consensus 245 ~~a~~~-~--~--~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~---~~t~~V~v~~pn 307 (985)
+|+++. . + .++++||++..+|.++...+ ...|++++.++. ++|++ ++ +++++|++|+||
T Consensus 576 Lmair~yh~~~Ge~~r~~vLIp~saHgtNpasa----~~~GieVv~Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pn 651 (954)
T PRK12566 576 LLAIRRYHRSRGQSQRDICLIPSSAHGTNPASA----QMAGMRVVIVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPS 651 (954)
T ss_pred HHHHHHHHHhcCCCCCCEEEecccccccCHHHH----HHCCCEEEEeccCCCCCcCHHHHHHHhhccCCCEEEEEEEecC
Confidence 888764 1 1 25789999999997775554 346899998865 35665 65 789999999999
Q ss_pred CCeeec-cHHHHHHHHHhCCcEEEE-EecCccccCCCCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCC
Q 001989 308 TEGEVL-DYGDFIKNAHANGVKVVM-ATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMP 384 (985)
Q Consensus 308 ~~G~v~-di~~I~~~a~~~galliV-~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp 384 (985)
+.|.++ |+++|+++||++|++++| ++|+.+++.+..|+++||||+++++ |+|++|+++||||+|++++++.+.+.+|
T Consensus 652 t~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp 731 (954)
T PRK12566 652 THGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVA 731 (954)
T ss_pred cCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCChhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhcc
Confidence 998876 599999999999999888 7888888888889999999999997 9999999999999999999996665554
Q ss_pred CceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC
Q 001989 385 GRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL 464 (985)
Q Consensus 385 ~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~ 464 (985)
+.- | +|.+|++ .|+++|||+|+++++.+..|.+|+..+|++ +++.++.+..+++|++++|.+
T Consensus 732 ~~P-~--~d~~G~~-------------~r~ga~S~~~~gsa~~l~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~- 793 (954)
T PRK12566 732 NHP-V--VPVEGPD-------------PNNGAVSAAPWGSASILPISWMYIAMMGPQ-LADASEVAILSANYLANQLGG- 793 (954)
T ss_pred CCC-C--cCCCCCC-------------CCCCceeecccchHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHhHh-
Confidence 220 1 2333432 147899999999999999999999999999 999999999999999999987
Q ss_pred CCeEEc-CC---CCcceEEEecC-------C-HHHHHHHHHHcCceeeee---cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 465 GTVEVQ-GL---PFFDTVKVKCA-------D-AHAIASAAYKIEMNLRVV---DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 465 g~~~~~-~~---~~~~~~~~~~~-------~-~~~v~~~L~~~GI~~~~~---~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+ +.+. .+ ++++++.+... . +.++.++|.++||....+ ..+++|+|+||++|++|||+|+++|..
T Consensus 794 ~-~~v~~~~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL~d~Gihapt~~fPv~~~LmIepTE~eskeEIDrf~eAL~~ 872 (954)
T PRK12566 794 A-FPVLYRGRNERVAHECILDLRPLKAQTGISEEDVAKRLMDYGFHAPTMSFPVPGTLMVEPTESESKAELDRFVEAMLS 872 (954)
T ss_pred h-CCCCcCCCCCCeeeEEEEEccccccccCCCHHHHHHHHHHCCcEEeEEeeccCCEEEEEeeeeCCHHHHHHHHHHHHH
Confidence 3 5554 32 56788887754 2 688999999999987543 268999999999999999999999974
No 15
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=100.00 E-value=5.2e-49 Score=463.82 Aligned_cols=411 Identities=45% Similarity=0.774 Sum_probs=342.0
Q ss_pred ccCCCCccCCCCCCCCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchh
Q 001989 546 TAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPAD 625 (985)
Q Consensus 546 ~~ip~~~~~~~~~~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e 625 (985)
.+||+++|+++++ .+| + +||.|+++++++|+++|...+.+++++|+|++++++........+++|.+||||||..
T Consensus 32 ~~ip~~~~~~~~~-~~~---~-~se~~~~~~~~~l~~~n~~~~~~~~g~G~~~~~~~p~i~~~~~~~~~~~~~tpYq~e~ 106 (481)
T PRK04366 32 SLLPEELLRKEPP-ELP---E-VSELEVVRHYTRLSQKNYGVDTGFYPLGSCTMKYNPKINEKVARLPGFAELHPLQPEE 106 (481)
T ss_pred ccCCHHHhcCCCC-CCC---C-CCHHHHHHHHHHHHhcCCCCCcceecCcccCCCCCHHHHHHHHhCcchhcCCCCCChh
Confidence 4799999999886 677 4 9999999999999999988667788889999999998777777888888999999933
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEE
Q 001989 626 QAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 626 ~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv 705 (985)
.+||.+++++++++++++++|++.+++.+++|+.++..++.+++.+...+|..++++||+++..|+.+...++..|++++
T Consensus 107 ~sqG~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv 186 (481)
T PRK04366 107 TVQGALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAGFKVV 186 (481)
T ss_pred hhhHHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHHHHHcCCEEE
Confidence 99999999999999999999999878888888887755555565544334422456899999999999888999999999
Q ss_pred EEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCc
Q 001989 706 SVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGAD 785 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~D 785 (985)
.+|++++|.+|+++|+++++ ++|++|++++||++|++..|+++|+++||++|++++||++|+.++.+...|+++|+|
T Consensus 187 ~v~~~~~~~~D~e~L~~~i~---~~t~~V~v~~Pn~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD 263 (481)
T PRK04366 187 EIPSNEDGLVDLEALKAAVG---EDTAALMLTNPNTLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKARPGDMGFD 263 (481)
T ss_pred EeecCCCCCcCHHHHHhhcc---cCCeEEEEeCCCCccccchHHHHHHHHHHHcCCEEEEEecChhhhcccCCccccCCC
Confidence 99998889999999999997 789999999999999883389999999999999999999998775555578999999
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC----CCC----CCCCCCCCCCCcchhhhHHHHHHH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI----PAP----EKSQPLGTIAAAPWGSALILPISY 857 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~----~~~----~~~~~~~~i~s~~~g~~~~~~~a~ 857 (985)
++++++||||+.|+|+||||+|++++++++.+++|+++++..+.. .++ +|.+++ .++.+.+.++|
T Consensus 264 ~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~-------t~~~l~~~~a~ 336 (481)
T PRK04366 264 VVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAF-------YGNFGVLVRAY 336 (481)
T ss_pred EEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeeccCCceeecccccccCCCcccc-------cCchHHHHHHH
Confidence 999999999999999999999999999999999998876532211 111 122222 12556778899
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC
Q 001989 858 TYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 858 a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~ 937 (985)
.|+..+|.+|++++++++.++++|++++|++.+++.+. .++++++++++..+. ..|++..++.++|.++||+++..
T Consensus 337 ~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~~~~~~~---~~~~~~~~~~~~~~~-~~g~~~~~v~~~L~~~Gi~~~~~ 412 (481)
T PRK04366 337 AYIRSLGAEGLREVSEDAVLNANYLKARLKDIYDLPYD---RPCMHEFVLSGKKLK-ETGVRTLDIAKRLLDYGFHPPTI 412 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCcccCC---CCeeEEEEEECcccc-ccCCCHHHHHHHHHHCCccCCcc
Confidence 99999999999999999999999999999876565442 356778888754221 12567899999999999998866
Q ss_pred CCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccC
Q 001989 938 SWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 938 ~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~ 977 (985)
.+| ..+.+|+|+++++|++|||+ +++.|+++.++++..
T Consensus 413 ~~p~~~~~~l~is~~e~~t~edid~--l~~~l~~i~~~~~~~ 452 (481)
T PRK04366 413 YFPLIVPEALMIEPTETESKETLDA--FIAAMKQIAEEAKEN 452 (481)
T ss_pred ccccccCCeEEEcccCCCCHHHHHH--HHHHHHHHHHHHHhC
Confidence 665 35799999999999999999 889999998877654
No 16
>PRK05367 glycine dehydrogenase; Provisional
Probab=100.00 E-value=5e-47 Score=469.13 Aligned_cols=402 Identities=20% Similarity=0.298 Sum_probs=320.1
Q ss_pred cCCCCCHHHHHHHHHHhCCC--CHHHhh-------hhcCCCcc-ccCCCCCC-CCCCCCCHHHHHHHHHHHhcCCCcc-c
Q 001989 101 RHNSATPEDQAKMSELVGLD--NLDSLI-------DATVPKSI-RIDSMKFS-KFDEGLTESQMIEHMQKLASMNKVY-K 168 (985)
Q Consensus 101 ~~~~~~~~~~~~ml~~~g~~--~~~~l~-------~~~ip~~~-~~~~~~lp-~~~~~~se~e~~~~~~~l~~~n~~~-~ 168 (985)
.+--+|++|++..++.++.. +++.+- ...||+.+ |+.++.+| .|..-.||.|++|||++|++||... .
T Consensus 420 ~~e~~t~~did~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~~~~sE~e~~r~~~~l~~kn~~~~~ 499 (954)
T PRK05367 420 LDETTTREDLAALLAVFGGAALDVDALDADVADASASALPAALLRTSAYLTHPVFNRYHSETEMMRYLRRLEDKDLALDR 499 (954)
T ss_pred ecccCCHHHHHHHHHHHcccccchhhhhhhhcccccccCCHHHhcCCcccCCcccCCCCCHHHHHHHHHHHHhcCcCccc
Confidence 33447899999999999843 222221 12499999 88877776 2333469999999999999999873 3
Q ss_pred eecCCC-CCCCCCcHHHHHHHHhCCccccccCCChh-hHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHH-HHH
Q 001989 169 SFIGMG-YYNTHVPPVILRNIMENPAWYTQYTPYQA-EIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAE-AMA 245 (985)
Q Consensus 169 ~~lG~g-~y~~~~p~~v~~~i~~~~~~~t~~~pyq~-e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~e-a~~ 245 (985)
++++.| ||.++.|. +.+.++++++|++ |||||| |++||++|+++|+|+++|+|+|++ ++++++++++.+| +.+
T Consensus 500 ~~i~lGsct~~~~p~-~~~~~~~~~~f~~-~hP~qp~e~~qG~l~~i~e~q~~l~eltG~d--~~sl~~~~ga~ge~agL 575 (954)
T PRK05367 500 SMIPLGSCTMKLNAA-AEMIPITWPEFAN-LHPFAPAEQAAGYRELIDQLEAWLAEITGYD--AVSLQPNAGAQGEYAGL 575 (954)
T ss_pred ceeeCCcCCCcCCHH-HHHHHHhCccccc-cCCCChHHHHHHHHHHHHHHHHHHHHHHCCC--CEEECccHHHHHHHHHH
Confidence 444444 55555554 4469999999955 999999 899999999999999999999998 5999999988888 555
Q ss_pred HHhhh---hcC--CCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cC---CCEeEEEEEcCCC
Q 001989 246 MCNNI---QKG--KKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KS---GDVCGVLVQYPGT 308 (985)
Q Consensus 246 ~a~~~---~~~--~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~---~~t~~V~v~~pn~ 308 (985)
++.+. .++ ++++|++++..|+++...+. ..|+++++++. ++|++ ++ +++++|++|+||+
T Consensus 576 ~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~----~~G~~vv~v~~d~~G~iD~~~L~~~i~~~~~~la~V~it~pst 651 (954)
T PRK05367 576 LAIRAYHESRGEGHRDVCLIPSSAHGTNPASAV----MAGMKVVVVACDENGNIDLDDLRAKAEEHADNLAAIMITYPST 651 (954)
T ss_pred HHHHHHhhccCCCCCCEEEEEchhhhhhHHHHH----HCCCEEEEECCCCCCCcCHHHHHHHHhccCCCeEEEEEEcCCC
Confidence 55542 111 34579999999999887764 46889998865 34655 54 3689999999999
Q ss_pred Ceee-ccHHHHHHHHHhCCcEEEE-EecCccccCCCCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCC
Q 001989 309 EGEV-LDYGDFIKNAHANGVKVVM-ATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPG 385 (985)
Q Consensus 309 ~G~v-~di~~I~~~a~~~galliV-~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~ 385 (985)
.|.+ .|+++|+++||++|++++| ++|+.++..+.+|+++|||++++++ |+|++|+++||||+|++++++.+.++||+
T Consensus 652 ~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg 731 (954)
T PRK05367 652 HGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLARPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPG 731 (954)
T ss_pred CeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCChhhcCCCEEEecCcccCCCCcCCCCCceEEEeecccccccCCC
Confidence 9987 5899999999999999999 6777777677789999999999998 99999999999999999999999999999
Q ss_pred ceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC
Q 001989 386 RIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG 465 (985)
Q Consensus 386 ~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g 465 (985)
+.+|.+.+.++. + .. .|+++| +++.+..+.+|+.++|++|++++.+++..+|+|++++|++.
T Consensus 732 ~~v~~~~~~~~~-g-------------~v-~ta~~g--~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~- 793 (954)
T PRK05367 732 HPVQIAGGETGI-G-------------AV-SAAPFG--SASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDH- 793 (954)
T ss_pred CccCcCCCCCCc-C-------------cc-hhHHHH--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 987743322111 1 11 256777 56777888899999999999999999999999999999873
Q ss_pred CeEEc--C--CCCcceEEEecC------C--HHHHHHHHHHcCceeeeec---CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 466 TVEVQ--G--LPFFDTVKVKCA------D--AHAIASAAYKIEMNLRVVD---SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 466 ~~~~~--~--~~~~~~~~~~~~------~--~~~v~~~L~~~GI~~~~~~---~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+++. + .++++++.++.. + +.++.++|.++||..+.+. .+.+++++||++|++|||+|+++|..
T Consensus 794 -~~~~~~~~~~~~~~e~i~~~~~~~~~~g~~~~di~krL~d~G~~~~t~~~pv~~~l~i~ptE~~s~~elDr~~~al~~ 871 (954)
T PRK05367 794 -YPVLYTGANGRVAHECILDLRPLKESTGITVDDIAKRLIDYGFHAPTMSFPVAGTLMVEPTESESKAELDRFCDAMIA 871 (954)
T ss_pred -cCccccCCCCCcccceEEEeecccccCCCCHHHHHHHHHHCCCeEeecCCccCCEEEEEeeecCCHHHHHHHHHHHHH
Confidence 5553 2 256778777653 2 7899999999999876532 68999999999999999999999974
No 17
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=100.00 E-value=3.9e-45 Score=449.36 Aligned_cols=402 Identities=20% Similarity=0.285 Sum_probs=332.2
Q ss_pred CCCCCHHHHHHHHHHhC-CCCHH-------HhhhhcCCCcc-ccCC-CCCCCCCCCCCHHHHHHHHHHHhcCCCcc-cee
Q 001989 102 HNSATPEDQAKMSELVG-LDNLD-------SLIDATVPKSI-RIDS-MKFSKFDEGLTESQMIEHMQKLASMNKVY-KSF 170 (985)
Q Consensus 102 ~~~~~~~~~~~ml~~~g-~~~~~-------~l~~~~ip~~~-~~~~-~~lp~~~~~~se~e~~~~~~~l~~~n~~~-~~~ 170 (985)
|--+|++|++..++.++ .++++ +-....||+.+ |+.+ |.+|.|..-.||.|++||+++|+++|.+. +++
T Consensus 448 ~e~~T~edId~L~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~r~~~~l~~p~f~~~~se~~~~r~~~~l~~~~~~~~~~~ 527 (993)
T PLN02414 448 DETTTLEDVDKLFKVFAGGKPVPFTAESLAPEVDSSIPSSLARESPYLTHPIFNQYHSEHELLRYLHRLQNKDLSLVHSM 527 (993)
T ss_pred eccCCHHHHHHHHHHHcccccccchhhhhhhhhcccCchhhhccCccccCcccccccCHHHHHHHHHHHhhcccccccCC
Confidence 33478999999999995 32322 11222499998 7665 47887766799999999999999999875 568
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhh-HhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHH-HHHHHh
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAE-IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAE-AMAMCN 248 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e-~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~e-a~~~a~ 248 (985)
+..|.+-.-+++.+.+..++.++ ++..+||||+ ..||.++.++++++++|+++|++ .+++++++|+..| |.++++
T Consensus 528 ~plgsctmk~n~~~~~~~~~~~~-~~~~hp~~p~~~~~g~~~~~~~~r~~la~i~g~~--~v~f~pnaga~ge~a~~~vi 604 (993)
T PLN02414 528 IPLGSCTMKLNATTEMMPVTWPE-FANIHPFAPVDQAQGYQEMFEDLGDLLCEITGFD--SFSLQPNAGAAGEYAGLMVI 604 (993)
T ss_pred ccCcccccccCchhhhhhhcCcc-hhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC--eEEEcCCCcHHHHHHHHHHH
Confidence 88887777799999888889988 4888999998 99999999999999999999994 4999999986544 555543
Q ss_pred h-hhcCCCC----EEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cC---CCEeEEEEEcCCCCe-
Q 001989 249 N-IQKGKKK----TFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KS---GDVCGVLVQYPGTEG- 310 (985)
Q Consensus 249 ~-~~~~~g~----~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~---~~t~~V~v~~pn~~G- 310 (985)
+ +.+.+|| +||++..+|.++..+|.. .|+++++++. ++|++ ++ ++|++|++|+||+.|
T Consensus 605 ~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~----~G~~vv~v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg 680 (993)
T PLN02414 605 RAYHLSRGDHHRNVCIIPVSAHGTNPASAAM----CGMKIVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGV 680 (993)
T ss_pred HHHHhccCCCCCCEEEeCCCcCccCHHHHHH----CCCEEEEeccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCcccc
Confidence 3 2222344 899999999999999864 5889888865 45666 76 489999999996655
Q ss_pred eeccHHHHHHHHHhCCcEEEE-EecCccccCCCCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCcee
Q 001989 311 EVLDYGDFIKNAHANGVKVVM-ATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIV 388 (985)
Q Consensus 311 ~v~di~~I~~~a~~~galliV-~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~v 388 (985)
...||++|+++||++|++++| ++|+.+++.+.+|+++|+||+++++ |+|++|+|+||||+|++++++++.++||++.+
T Consensus 681 ~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v 760 (993)
T PLN02414 681 YEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPV 760 (993)
T ss_pred ccchHHHHHHHHHHcCCEEEEEecCHHhccCcCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCcc
Confidence 556799999999999999999 7888888888889999999999998 88999999999999999999999999999988
Q ss_pred eeeecCCCCcceeeecccccccccccccCCCccc------hhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHh
Q 001989 389 GVSIDSSGKPALRVAMQTREQHIRRDKATSNICT------AQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLK 462 (985)
Q Consensus 389 G~t~d~~g~~~~~l~l~tre~~irre~atsni~t------~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~ 462 (985)
|.+. +| .||++ |+|||| ++++.+..|.+|+..+|.+|++++++++..+++|++++|+
T Consensus 761 ~~~~------~~----------~~r~~-~s~iGt~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~ 823 (993)
T PLN02414 761 VPTG------GI----------PRPEK-TQPLGTISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLE 823 (993)
T ss_pred ccCC------Cc----------ccccC-CCCcCCccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7421 12 14566 899999 7888888899999999999999999999999999999998
Q ss_pred cCCCeEEc--C--CCCcceEEEecC-------C-HHHHHHHHHHcCceeeee---cCCeEEEEeccCCCHHHHHHHHHHH
Q 001989 463 KLGTVEVQ--G--LPFFDTVKVKCA-------D-AHAIASAAYKIEMNLRVV---DSNTVTASFDETTTLEDVDKLFIVF 527 (985)
Q Consensus 463 ~~g~~~~~--~--~~~~~~~~~~~~-------~-~~~v~~~L~~~GI~~~~~---~~~~lris~t~~~t~edId~li~aL 527 (985)
+ + +++. + .+++++|++..+ . +.+++++|.++||..... ..+++|+++||++|++|||+|+++|
T Consensus 824 ~-~-~~~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~d~Gihapt~~~pv~~~lmiepTE~~skeelDrf~~al 901 (993)
T PLN02414 824 G-H-YPVLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDAL 901 (993)
T ss_pred h-h-CCccccCCCCCeeeeEEEeccccccccCCCHHHHHHHHHHcCcEEeeeccccCCEEEEEeeeeCCHHHHHHHHHHH
Confidence 7 3 5543 2 267889888765 2 689999999999987543 2689999999999999999999999
Q ss_pred hC
Q 001989 528 AG 529 (985)
Q Consensus 528 ~~ 529 (985)
..
T Consensus 902 ~~ 903 (993)
T PLN02414 902 IS 903 (993)
T ss_pred HH
Confidence 74
No 18
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-42 Score=376.20 Aligned_cols=389 Identities=20% Similarity=0.297 Sum_probs=302.8
Q ss_pred CCCCHHHhhhhcCCCccccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCccc-eecCCCCCCCCCcHHHHHHHHhCCcccc
Q 001989 118 GLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYK-SFIGMGYYNTHVPPVILRNIMENPAWYT 196 (985)
Q Consensus 118 g~~~~~~l~~~~ip~~~~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~~~-~~lG~g~y~~~~p~~v~~~i~~~~~~~t 196 (985)
|++..++-....+|..++++.+.+| ..||.|++||+++|+++|.... .+.-.|.+-.-+++.+.+..+..++| .
T Consensus 19 ~~~l~~~~~~~~L~~~~~r~~~~~P----e~SE~e~~Rh~~rLs~kn~avd~~m~PLGSCTMK~Np~~e~~~~~~p~f-~ 93 (496)
T COG1003 19 GYSLPEQVVEEYLPHPVFRRYPPLP----EHSETEMVRHYTRLSQKDLAVDRGMIPLGSCTMKLNPKAEMKPATWPEF-A 93 (496)
T ss_pred ccccccccchhhcCcHHhhcCCCCc----cccHHHHHHHHHHHHhcccccccCccCCcccccccCchhhcccccccch-h
Confidence 3333444444457777733333346 7999999999999999998762 24444444345888888777788885 5
Q ss_pred ccCCChhh-HhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHH-HHhh-hh--c--CCCCEEEEcCCCChhHH
Q 001989 197 QYTPYQAE-IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMA-MCNN-IQ--K--GKKKTFIIASNCHPQTI 269 (985)
Q Consensus 197 ~~~pyq~e-~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~-~a~~-~~--~--~~g~~Vlv~~~~H~s~~ 269 (985)
..+||||+ ..||.++.++++|++++++||||. +|+++++.+..|-+. ++++ +. + +.|+.+|++++.|..+-
T Consensus 94 ~iHP~~pe~~vqG~l~li~~Lq~~L~~ITG~Da--vsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNP 171 (496)
T COG1003 94 NIHPFQPEEQVQGYLELIYELQEWLKEITGMDA--VSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNP 171 (496)
T ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHhcCCce--eeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCCh
Confidence 67999998 899999999999999999999998 999998888777554 4444 32 2 26788999999996554
Q ss_pred HHHHHhhcCCCeEEEEeC--------chhhhc-cCCCEeEEEEEcCCCCeeec-cHHHHHHHHHhCCcEEEE-EecCccc
Q 001989 270 DICITRADGFDIKVVVSD--------LKDIDY-KSGDVCGVLVQYPGTEGEVL-DYGDFIKNAHANGVKVVM-ATDLLAL 338 (985)
Q Consensus 270 ~~~~~~a~~~gi~v~~v~--------~~~l~~-l~~~t~~V~v~~pn~~G~v~-di~~I~~~a~~~galliV-~a~~~~l 338 (985)
+-. .-.|++|+.|+ ++||++ ++++++++++|+||+.|.++ +|.+|++++|++|++|++ |++..++
T Consensus 172 ASA----am~G~~VV~V~~~~~G~VDlddLk~k~~~~~AalMiTnPsT~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~ 247 (496)
T COG1003 172 ASA----AMAGFKVVVVKCDENGNVDLDDLRAKAEDNLAALMITNPSTLGVFEEDIREICEIVHEAGGQVYYDGANLNAI 247 (496)
T ss_pred hhH----hhcCceEEEEecCCCCCccHHHHHHHhccceeEEEeccCcccccchhhHHHHHHHHHHcCCEEEecCcchhhh
Confidence 442 12477888764 467887 88999999999999999997 899999999999999999 7898888
Q ss_pred cCCCCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccC
Q 001989 339 TILKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKAT 417 (985)
Q Consensus 339 g~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~at 417 (985)
-.+.+||++|+||+..+. |+|++|||.||||.|.+.|++.+.++||++. .. .+ +.. |.+....+ ..+.|- .
T Consensus 248 vG~~rPGd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~-~~-~~--~~~-y~~~~~~~-~s~g~~--~ 319 (496)
T COG1003 248 VGLARPGDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPV-VY-HD--VGE-YRLDYDGK-KSIGVS--A 319 (496)
T ss_pred hccccccccccceEEeecccccccCCCCCCCCCCceehHhhccccCCCCc-cc-CC--Ccc-ccccCCCC-ccceee--c
Confidence 778899999999999999 9999999999999999999999999999865 21 01 111 33332111 223232 2
Q ss_pred CCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc-CC--CCcceEEEecC------C--HH
Q 001989 418 SNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ-GL--PFFDTVKVKCA------D--AH 486 (985)
Q Consensus 418 sni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~-~~--~~~~~~~~~~~------~--~~ 486 (985)
.++.+.+. -..+-+|+..+|++||++..+...-+|+|++++|+.. ++++ .. ...++|+++.. + +.
T Consensus 320 a~~Gs~~i--l~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~~--y~~~y~~~~~~~HE~ild~r~l~~~~Gv~~~ 395 (496)
T COG1003 320 APYGSASI--LPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKGY--YPVPYTGENRVAHECILDARPLKKETGVRAL 395 (496)
T ss_pred cccCcchH--HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhc--CccccCCCCcceeEEEeechHhHhhcCCcHH
Confidence 34433332 2456779999999999999999999999999999973 7764 22 35678888765 3 89
Q ss_pred HHHHHHHHcCceeee-----ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 487 AIASAAYKIEMNLRV-----VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 487 ~v~~~L~~~GI~~~~-----~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+|+|+|.+.|++.+. +..++++|.+||..+++|+|+|+++|..
T Consensus 396 DvAKrLlD~GfHaPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~ 443 (496)
T COG1003 396 DVAKRLLDYGFHAPTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIA 443 (496)
T ss_pred HHHHHHHhcCCCCCcccCccccccceeecCCCCCCHHHHHHHHHHHHH
Confidence 999999999997643 3579999999999999999999999984
No 19
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=100.00 E-value=6.9e-37 Score=360.21 Aligned_cols=411 Identities=24% Similarity=0.352 Sum_probs=310.7
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCHHhhhhhhhccCCCCccCCCCCCCCccccCCCCHHHHHHHHHHHhccccCcccccccc
Q 001989 515 TTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPL 594 (985)
Q Consensus 515 ~t~edId~li~aL~~~~~~~~~~~~l~~~~~~~ip~~~~~~~~~~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~l 594 (985)
|+++|++.+++.|+.. |+|+|++ +||+.+|++.+. .+| ++.|+.++++++.+++.+|.......+++
T Consensus 7 ~~~~~~~~~~~~~~~~-----~~~~~~~----~~p~~~~~~~~~-~lp---~~~~~~~v~~~~~~~~~~~~~~~~~~~~l 73 (447)
T PRK00451 7 HTEEDIREMLDAIGVK-----SIDELFA----DIPEELRLKRPL-DLP---PGLSEMELLRHLRELAAKNKTAEEYPSFL 73 (447)
T ss_pred CCHHHHHHHHHHhCCC-----CHHHHHH----hCCHHHHhCCCC-CCC---CCCCHHHHHHHHHHHHhcCCCcCcCcccC
Confidence 6899999999999977 8999984 799999998875 778 45699999999999998776554456788
Q ss_pred cccccCCCccccccc-ccccccc-ccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceec-CcHHHHHHHHHHHHHHH
Q 001989 595 GSCTMKLNATTEMMP-VTWPSFA-NIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQP-NAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 595 G~~t~~~~~~~~~~~-~~~~~f~-~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~-~sGa~a~~a~l~air~~ 671 (985)
|.+.+.......... .....+. .|+|+++ +.++|.++.+.++++++++++|++..++.. ++|+.+.++++++++.
T Consensus 74 g~g~~~~~~p~~~~~~~~~~~~~~~y~~~~~-~~~~g~~~~~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~- 151 (447)
T PRK00451 74 GAGAYDHYIPAVVDHIISRSEFYTAYTPYQP-EISQGTLQAIFEYQTMICELTGMDVANASMYDGATALAEAALMAVRI- 151 (447)
T ss_pred cccccCCcCcHHHHHHHhchhHHHhcCCCCC-ccchHHHHHHHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHh-
Confidence 864443322222112 2233443 4889998 889999999999999999999998765544 4445455555554431
Q ss_pred HHhcCCCCCCEEEEcCCCCcccHHHHH----HCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCcccccc
Q 001989 672 HKARGDHHRNVCIIPVSAHGTNPATAA----MCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEE 747 (985)
Q Consensus 672 ~~~~g~~~~~~IIv~~~~Hg~~~~~a~----~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~ 747 (985)
.++++||+++.+|+++...++ ..|++++.+|++++ .+|+++|+++++ ++|++|++++||++|.++
T Consensus 152 ------~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~~-~~d~~~l~~~i~---~~t~~v~l~~pn~tG~v~- 220 (447)
T PRK00451 152 ------TKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYEDG-VTDLEALEAAVD---DDTAAVVVQYPNFFGVIE- 220 (447)
T ss_pred ------cCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCCC-CCCHHHHHHhcC---CCeEEEEEECCCCCCeeC-
Confidence 257899999999988877654 47999999999887 999999999997 889999999999999998
Q ss_pred CHHHHHHHHHHcCCEEEE--EccccccccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccc
Q 001989 748 GIDEICKIIHDNGGQVYM--DGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVV 825 (985)
Q Consensus 748 di~eI~~la~~~galliV--D~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g 825 (985)
|+++|+++||++|++++| |.. +.+.+..++++++|++++++|| |++|+.+||||+|++++++++.+.+++.++|
T Consensus 221 ~l~~I~~~a~~~~~~~iv~~d~~---~~g~~~~~~~~~~D~~~~s~~k-~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g 296 (447)
T PRK00451 221 DLEEIAEIAHAGGALFIVGVDPV---SLGLLKPPGEYGADIVVGEGQP-LGIPLSFGGPYLGFFATRKKLVRQMPGRLVG 296 (447)
T ss_pred CHHHHHHHHHHCCCEEEEEcChH---HhccCCCcccCCCCEEEECCCc-CCCCCCCCCCCchHHHhhHHHHhhCCCCEee
Confidence 899999999999999998 533 3455556789999999999887 7899999999999999999888888777666
Q ss_pred cCCCC-CC-------------CCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--c
Q 001989 826 STGGI-PA-------------PEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--H 889 (985)
Q Consensus 826 ~~~~~-~~-------------~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g 889 (985)
++.+. .+ .++++++.++++. ......++++++..++.+|++++.++..++++++.++|++ +
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g 373 (447)
T PRK00451 297 ETVDADGKRGFVLTLQAREQHIRREKATSNICTN---QALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGG 373 (447)
T ss_pred eecccCCCeeeEeecccccccccccccccccccc---HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 53211 00 1233445555532 1222234555777889999999999999999999999986 3
Q ss_pred CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC---CCC-CCCEEEEeccCCCCHHHHHHHHccC
Q 001989 890 YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM---SWP-VPGTLMIEPTESESKSWTGIVMLSS 965 (985)
Q Consensus 890 ~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~---~~p-~~~~lris~t~~~t~eeId~~~~~~ 965 (985)
+++. . +..++.++++++ .+..+++++|.++|+.++.. .+| ..+.+|+|+++++|++|||+ +++
T Consensus 374 ~~~~-~---~~~~~~~~v~~~-------~~~~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~--l~~ 440 (447)
T PRK00451 374 VELF-D---GPFFNEFVVRLP-------KPAEEVNEALLEKGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDA--LVA 440 (447)
T ss_pred EEec-C---CCeEEEEEEecC-------CCHHHHHHHHHhcCCCCCcccccccCCcCCEEEEecCCCCCHHHHHH--HHH
Confidence 3332 2 234554556543 35789999999999885421 122 34799999999999999999 777
Q ss_pred ChhHHH
Q 001989 966 PSEKKL 971 (985)
Q Consensus 966 ~l~~~~ 971 (985)
.|++++
T Consensus 441 ~L~~~~ 446 (447)
T PRK00451 441 ALGEVL 446 (447)
T ss_pred HHHHHh
Confidence 777653
No 20
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=100.00 E-value=8.3e-36 Score=345.96 Aligned_cols=375 Identities=44% Similarity=0.650 Sum_probs=300.7
Q ss_pred HHHHHHHHHHHhcCCCccc---eecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCC
Q 001989 150 ESQMIEHMQKLASMNKVYK---SFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGL 226 (985)
Q Consensus 150 e~e~~~~~~~l~~~n~~~~---~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~ 226 (985)
|.||++|+++++++|.... ..+|.|..+|..|..+.+...+. ...+.|+||.+..++|..+...++++.+++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~ 79 (398)
T cd00613 1 ETEVLRHLKRLASKNKALDQSMSFLGSGTYKHNPPAVIKRNILEN-EFYTAYTPYQPEISQGRLQALFELQTMLCELTGM 79 (398)
T ss_pred CHHHHHHHHHHHhcCcCcccCcccccccccCCcCcHHHHHHhccc-cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCC
Confidence 5699999999998887543 47888888888999986433333 3467889999999999999999999999999999
Q ss_pred CCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCCC
Q 001989 227 PMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSGD 297 (985)
Q Consensus 227 ~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~~ 297 (985)
+..++.++.+++.++++++++.....++||+|++++..|+++...+....+..|++++.++. +++++ ++++
T Consensus 80 ~~~~v~~~~~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~ 159 (398)
T cd00613 80 DVANASLQDEATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEE 159 (398)
T ss_pred CccceeccCchHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcCCC
Confidence 87777788877766666655433331248999999999999999997765566788887754 34566 7889
Q ss_pred EeEEEEEcCCCCeeeccH-HHHHHHHHhCCcEEEEEecCcccc-CCCCCCcccceEEEecC-ccccccCCCCCCcEEEEE
Q 001989 298 VCGVLVQYPGTEGEVLDY-GDFIKNAHANGVKVVMATDLLALT-ILKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLA 374 (985)
Q Consensus 298 t~~V~v~~pn~~G~v~di-~~I~~~a~~~galliV~a~~~~lg-~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~ 374 (985)
|++|++++|+++|.+.|+ ++|+++||++|++++||. .++.+ .+..++++|+|++++++ |++ .|++.|||++||++
T Consensus 160 t~~viv~~~~~~G~~~~~l~~i~~la~~~g~~livD~-~~~~~~~~~~~~~~~~d~~~~s~~K~~-~p~g~Ggp~~g~l~ 237 (398)
T cd00613 160 VAALMVQYPNTLGVFEDLIKEIADIAHSAGALVYVDG-DNLNLTGLKPPGEYGADIVVGNLQKTG-VPHGGGGPGAGFFA 237 (398)
T ss_pred eEEEEEECCCCCceecchHHHHHHHHHhcCCEEEEEe-ccccccCCCChHHcCCCEEEeeccccC-CCCCCCCCceeEEE
Confidence 999999999989999985 999999999999999954 22322 34456889999999999 666 99999999999999
Q ss_pred EchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Q 001989 375 TSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLA 454 (985)
Q Consensus 375 ~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a 454 (985)
+++++.+.+++..+||..+..+.+.|.+.+..+..+.||+++|+|+++..++....+...+..++.+|++++.++..+++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~ 317 (398)
T cd00613 238 VKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNA 317 (398)
T ss_pred EhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 99999999999888875433334457776666677889999999999988887777777778889999999999999999
Q ss_pred HHHHHHHhcCCCeEEcCCCCcceEEEecC---C--HHHHHHHHHHcCceeeee---cCCeEEEEeccCCCHHHHHHHHHH
Q 001989 455 GTFALGLKKLGTVEVQGLPFFDTVKVKCA---D--AHAIASAAYKIEMNLRVV---DSNTVTASFDETTTLEDVDKLFIV 526 (985)
Q Consensus 455 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~---~--~~~v~~~L~~~GI~~~~~---~~~~lris~t~~~t~edId~li~a 526 (985)
++++++|+++++..+...++...+.+..+ + +.++.++|.++||.+... ..+.+|+|++.+||+||||+++++
T Consensus 318 ~~l~~~L~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~L~~~gi~~~~~~~~~~~~lRis~~~~~t~edid~~~~~ 397 (398)
T cd00613 318 NYLAKRLKEVGGVLPFNGPFFHEFVLRLPPLYGIRAEDLAKALIDGGFHAPTMYLPVDGTLMIEPTETETKEELDALLEA 397 (398)
T ss_pred HHHHHHHHhcCCcccCCCCeeEEEEEEcCCcchHHHHHHHHhhhhcCccccccccCCCCeEEEEcCCCCCHHHHHHHHHh
Confidence 99999999986333233344445566654 3 678999999999987653 357899999999999999999987
Q ss_pred H
Q 001989 527 F 527 (985)
Q Consensus 527 L 527 (985)
|
T Consensus 398 L 398 (398)
T cd00613 398 L 398 (398)
T ss_pred C
Confidence 5
No 21
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-35 Score=329.03 Aligned_cols=394 Identities=21% Similarity=0.294 Sum_probs=316.9
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCHHhhhhhhhccCCCCccCCCCCCCCccccCCCCHHHHHHHHHHHhccccCcccccccc
Q 001989 515 TTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPL 594 (985)
Q Consensus 515 ~t~edId~li~aL~~~~~~~~~~~~l~~~~~~~ip~~~~~~~~~~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~l 594 (985)
-++.|..+.++.++-. ++++|.+ ..+|..+|.++++ .+| ++++|.|+++++..++++|..| .+.|..
T Consensus 59 p~~~dq~~ml~tlG~~-----dl~~l~~---~~VP~~Ir~~~~l-~~~---~~~~E~eml~~l~~ia~kNk~~-ksfIGm 125 (1001)
T KOG2040|consen 59 PSPTDQQQMLDTLGYK-----DLDELIE---KTVPKSIRLKRPL-KMD---KPLCESEMLQHLEDIASKNKIW-KSFIGM 125 (1001)
T ss_pred CCchHHHHHHHhcChh-----hHHHHHH---hhcchhhcccchh-cCC---CCcCHHHHHHHHHHHHhhhhHH-HHhhcc
Confidence 3567778888888876 6777764 5799999999985 666 7899999999999999999754 456777
Q ss_pred cccccCCCccccccccccccccc-cCCCCchhhhhhHHHHHHHHHHHHHHHhCCCcc--ceecCcHHHHHHHHHHHHHHH
Q 001989 595 GSCTMKLNATTEMMPVTWPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTITGFDSF--SLQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 595 G~~t~~~~~~~~~~~~~~~~f~~-~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~--~~~~~sGa~a~~a~l~air~~ 671 (985)
|+..+.+++.........++|++ |+|||| |++||.++.+-.+|.++++++|.+.+ ++..-+++.|+ |..++.+.
T Consensus 126 GYyn~~vP~~I~RNilenp~W~TqYTPYQ~-EIsQGRLEsllNyQTmi~dlTGL~~aNASLLDEgTAaaE-Am~l~~~~- 202 (1001)
T KOG2040|consen 126 GYYNTHVPAVILRNILENPGWYTQYTPYQA-EISQGRLESLLNYQTMITDLTGLPMANASLLDEGTAAAE-AMALCNRI- 202 (1001)
T ss_pred ccccccCcHHHHHHhhhCCcceeccCCCch-hhhhhhHHHHhhhHHhhhhccCCcccchhhhccchhHHH-HHHHHHhh-
Confidence 88888888888887788899988 999999 99999999999999999999999874 56666555555 66665553
Q ss_pred HHhcCCCCCCEEEEcCCCCcccHHHH----HHCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCcccccc
Q 001989 672 HKARGDHHRNVCIIPVSAHGTNPATA----AMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEE 747 (985)
Q Consensus 672 ~~~~g~~~~~~IIv~~~~Hg~~~~~a----~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~ 747 (985)
.++.++++....|+-..... ...|++++..+ +++...- .+++..|.+++|++.|.+.
T Consensus 203 ------~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~~--------~~~~~~s----~~~v~gvlvQYP~t~G~i~- 263 (1001)
T KOG2040|consen 203 ------NKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVSD--------IKEADYS----SKDVSGVLVQYPDTEGSVL- 263 (1001)
T ss_pred ------cccceEEecCCCCcchhhhhhccccccceeEEecC--------HHHhhcc----ccceeEEEEEcCCCCCccc-
Confidence 35667999888776555543 24555654333 3322211 2578999999999999998
Q ss_pred CHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccC
Q 001989 748 GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVST 827 (985)
Q Consensus 748 di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~ 827 (985)
|..++.+.+|+.|.++++ ++...++..+..|+++|+||+++|+ +-|++|+|+|||+.||+++++++.+.+||+++|.+
T Consensus 264 d~~el~~~a~~~~s~vv~-atDLLaLtiLrpPgefGaDIavGSs-QRFGVPlGYGGPHAaFfAv~~~l~R~mPGRiiGvt 341 (1001)
T KOG2040|consen 264 DFDELVELAHANGSLVVM-ATDLLALTILRPPGEFGADIAVGSS-QRFGVPLGYGGPHAAFFAVSESLVRMMPGRIIGVT 341 (1001)
T ss_pred CHHHHHHHhhccCceEEE-eehhhHHHccCChhhcCceeeeccc-cccCccccCCCchHHHHHHHHHHHhhCCCceEeee
Confidence 899999999999999887 6777788888899999999999988 56999999999999999999999999999999987
Q ss_pred CCC-------------CCC-CCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCe
Q 001989 828 GGI-------------PAP-EKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPI 892 (985)
Q Consensus 828 ~~~-------------~~~-~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l 892 (985)
.|. ++| +|+++|+|||++ +++.+..+..|--+.|++|++++++++...+.+|...|+. +.++
T Consensus 342 kD~~gk~a~RLALQTREQHIrRDKATSNICTA---QALLANmaAmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~aghel 418 (1001)
T KOG2040|consen 342 KDALGKEAYRLALQTREQHIRRDKATSNICTA---QALLANMAAMYAIYHGPHGLKEIARRVHNLTLILAEGLKNAGHEL 418 (1001)
T ss_pred ecccccHHHHHHHHHHHHHhhhhccchhhhHH---HHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhhcchhh
Confidence 664 122 478999999975 7777777778888999999999999999999999999986 6665
Q ss_pred eecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHH
Q 001989 893 LFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVM 962 (985)
Q Consensus 893 ~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~ 962 (985)
.. ..+|..+-+.+. .+.+++.++-.+++|...... .+++-+++.|..+++|+|.++
T Consensus 419 ~~----k~fFDTLkI~~~-------~s~~~~l~rA~~~~iNlr~~e---d~tigvslDETv~~~DvddLl 474 (1001)
T KOG2040|consen 419 QH----KPFFDTLKIRCG-------CSAEEVLDRAAKRQINLRLVE---DGTIGVSLDETVTEKDVDDLL 474 (1001)
T ss_pred cc----ccccceEEEEec-------CcHHHHHHHHHhhcCceEEee---cCceEEeecccccHHHHHHHH
Confidence 42 245655666653 368888888888887664433 589999999999999999943
No 22
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=100.00 E-value=2.1e-33 Score=325.87 Aligned_cols=373 Identities=43% Similarity=0.642 Sum_probs=274.9
Q ss_pred HHHHHHHHHHHhccccCcccccccccccccCCCcccccccccc--ccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCC
Q 001989 570 EHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTW--PSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGF 647 (985)
Q Consensus 570 e~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~--~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~ 647 (985)
|+||++++.++++++...+.+++.||.|.+.++.......+.. .....|+|+.+ ..+.|..++.+++++++++++|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~la~~~g~ 79 (398)
T cd00613 1 ETEVLRHLKRLASKNKALDQSMSFLGSGTYKHNPPAVIKRNILENEFYTAYTPYQP-EISQGRLQALFELQTMLCELTGM 79 (398)
T ss_pred CHHHHHHHHHHHhcCcCcccCcccccccccCCcCcHHHHHHhccccCcccCCCCCh-hhhhhHHHHHHHHHHHHHHHHCC
Confidence 5799999999999998888788889888877766544332111 12223666665 56789999999999999999998
Q ss_pred Cc--cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCC----cEEEEEcCCCCCCCCHHHHH
Q 001989 648 DS--FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCG----MKIVSVGTDAKGNINIEELR 721 (985)
Q Consensus 648 ~~--~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G----~~vv~v~~d~~g~iD~e~L~ 721 (985)
+. ..+..++|++++ .++++++. .+ .++++|++++.+|+++...+...| ++++.+|+++++.+|+++|+
T Consensus 80 ~~~~v~~~~~g~~~~~-~~~~~~~~---~~--~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~ 153 (398)
T cd00613 80 DVANASLQDEATAAAE-AAGLAAIR---AY--HKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALK 153 (398)
T ss_pred CccceeccCchHHHHH-HHHHHHHh---cc--cCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHH
Confidence 74 334444444444 44333321 11 147899999999999988776666 99999999777889999999
Q ss_pred HHHHhcCCCEEEEEEEcCCCccccccC-HHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCC
Q 001989 722 KAAEANRDNLSTLMVTYPSTHGVYEEG-IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHG 800 (985)
Q Consensus 722 ~~i~~~~~~t~~Vvv~~pn~~G~i~~d-i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g 800 (985)
++++ ++|++|++++|+++|.+. | +++|+++|+++|+++++|++|..+. +..+++.+++|++++++|||+ +|+|
T Consensus 154 ~~i~---~~t~~viv~~~~~~G~~~-~~l~~i~~la~~~g~~livD~~~~~~~-~~~~~~~~~~d~~~~s~~K~~-~p~g 227 (398)
T cd00613 154 EEVS---EEVAALMVQYPNTLGVFE-DLIKEIADIAHSAGALVYVDGDNLNLT-GLKPPGEYGADIVVGNLQKTG-VPHG 227 (398)
T ss_pred HhcC---CCeEEEEEECCCCCceec-chHHHHHHHHHhcCCEEEEEecccccc-CCCChHHcCCCEEEeeccccC-CCCC
Confidence 9997 789999999998889997 6 5999999999999999999885444 445678889999999999999 9999
Q ss_pred CCCCceEEEEEcccccCcCCCCccccCCCC---------C-----CCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 801 GGGPGMGPIGVKKHLAPFLPSHPVVSTGGI---------P-----APEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 801 ~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~---------~-----~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
+|||++|++++++++.+.+++...++..+. . ..+++.++.++.+ +....++++++++..++.+
T Consensus 228 ~Ggp~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~---~~~~~~~~a~~~l~~~~~~ 304 (398)
T cd00613 228 GGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICT---GQALLALMAAMYIVYLGPE 304 (398)
T ss_pred CCCCceeEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhccccccccccee---cHHHHHHHHHHHHHHhCHH
Confidence 999999999999887776655433322100 0 0012334444332 3555667778888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEE
Q 001989 867 GLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTL 945 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~l 945 (985)
|+.++.++..+++++++++|++ +..... .+...+.+.+.++.. .+.+..+++++|.++||++.....+..+.+
T Consensus 305 g~~~~~~~~~~~~~~l~~~L~~~~~~~~~---~~~~~~~v~~~~~~~---~~~~~~~~~~~L~~~gi~~~~~~~~~~~~l 378 (398)
T cd00613 305 GLKEIAERAHLNANYLAKRLKEVGGVLPF---NGPFFHEFVLRLPPL---YGIRAEDLAKALIDGGFHAPTMYLPVDGTL 378 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccC---CCCeeEEEEEEcCCc---chHHHHHHHHhhhhcCccccccccCCCCeE
Confidence 9999999999999999999987 322211 123444455555410 023567899999999998765432235899
Q ss_pred EEeccCCCCHHHHHHHHccCC
Q 001989 946 MIEPTESESKSWTGIVMLSSP 966 (985)
Q Consensus 946 ris~t~~~t~eeId~~~~~~~ 966 (985)
|++|+.++|+||||+ +++.
T Consensus 379 Ris~~~~~t~edid~--~~~~ 397 (398)
T cd00613 379 MIEPTETETKEELDA--LLEA 397 (398)
T ss_pred EEEcCCCCCHHHHHH--HHHh
Confidence 999999999999999 4443
No 23
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-33 Score=318.99 Aligned_cols=360 Identities=19% Similarity=0.160 Sum_probs=275.6
Q ss_pred HHHHHHHHHHhcCC---CccceecCCCCCCCCCcHHHHHHHHhCC-ccccccCCChhhHhhhHHHHHHHHHHHHHHhcCC
Q 001989 151 SQMIEHMQKLASMN---KVYKSFIGMGYYNTHVPPVILRNIMENP-AWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGL 226 (985)
Q Consensus 151 ~e~~~~~~~l~~~n---~~~~~~lG~g~y~~~~p~~v~~~i~~~~-~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~ 226 (985)
..+++.+..+.+.- ..|.+.-+.+ ..|..+.+++..-. .++...+......++...+.+.++|+.+|+++|+
T Consensus 6 ~~~r~~fp~l~~~~~~~~vylD~aa~~----~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a 81 (405)
T COG0520 6 AAVRADFPALKREVGKPLVYLDNAATS----QKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNA 81 (405)
T ss_pred HHHHhhCHHHhhccCCCeEEecCcccc----cCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCC
Confidence 34777777776542 2232222222 37888876655311 1222224344457778888999999999999999
Q ss_pred CC-cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCC
Q 001989 227 PM-SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSG 296 (985)
Q Consensus 227 ~~-~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~ 296 (985)
++ .++.++.|+|.++..+..++....++||+||+++.+|++++.+|+.+++..|++++++++ ++++. +++
T Consensus 82 ~~~~eIvft~~tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~ 161 (405)
T COG0520 82 DSSDEIVFTRGTTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITP 161 (405)
T ss_pred CCCCeEEEeCChhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcCC
Confidence 95 889999999977666555443112478999999999999999999999888999999875 34555 789
Q ss_pred CEeEEEEEc-CCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEEecC-ccccccCCCCCCcEEEE
Q 001989 297 DVCGVLVQY-PGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSA-QRFGVPMGYGGPHAAFL 373 (985)
Q Consensus 297 ~t~~V~v~~-pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l 373 (985)
+|++|.+++ +|.+|.+.|+++|+++||++|++++||+ .++.|.+ .+..++|+|++++|+ |+|++|. |+|+|
T Consensus 162 ~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDa-aq~~~h~~idv~~l~~Df~afsgHKwl~gP~-----GiGvL 235 (405)
T COG0520 162 KTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDA-AQAAGHLPIDVQELGCDFLAFSGHKWLLGPT-----GIGVL 235 (405)
T ss_pred CceEEEEECccccccccchHHHHHHHHHHcCCEEEEEC-ccccCccCCCchhcCCCEEEEcccccccCCC-----ceEEE
Confidence 999999997 6999999999999999999999999943 3355543 356899999999999 5575542 68999
Q ss_pred EEchhhHhcCCCceeeee-ecCCCC-cceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHH
Q 001989 374 ATSQEYKRMMPGRIVGVS-IDSSGK-PALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVH 451 (985)
Q Consensus 374 ~~~~~~~~~lp~~~vG~t-~d~~g~-~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~ 451 (985)
|+++++++.|+|...|+. .+.... ..+. ..+...|.|.||+|+ .+.+++.+++ .++...|++++.++.+
T Consensus 236 y~r~~~l~~l~P~~~gg~~~~~~~~~~~~~----~~~~p~rfe~gTpn~---~~~i~l~aAl--~~~~~ig~~~i~~~e~ 306 (405)
T COG0520 236 YVRKELLEELEPFLGGGGMIEYVSRDEGVT----LAELPLRFEAGTPNI---AGAIGLAAAL--DYLLEIGMEAIEAHER 306 (405)
T ss_pred EEchHHHhhcCCcccCCCceeeeccccccc----ccCcchhhccCCchH---HHHHhHHHHH--HHHHHHhHHHHHHHHH
Confidence 999999999988888852 221111 1111 134567789999999 4666777776 6777788999999999
Q ss_pred HHHHHHHHHHhcCCCeEEcCCC---CcceEEEecCC--HHHHHHHHHHcCceeeee------------cCCeEEEEeccC
Q 001989 452 GLAGTFALGLKKLGTVEVQGLP---FFDTVKVKCAD--AHAIASAAYKIEMNLRVV------------DSNTVTASFDET 514 (985)
Q Consensus 452 ~~a~~l~~~L~~~g~~~~~~~~---~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~------------~~~~lris~t~~ 514 (985)
++++|+.++|+++.++++++.+ ....++|++++ +.++++.|.++||.++.- ..+.+|+|++.|
T Consensus 307 ~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~Y 386 (405)
T COG0520 307 ELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLY 386 (405)
T ss_pred HHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCCCHHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEeec
Confidence 9999999999999669998643 45678888887 999999999999987542 134599999999
Q ss_pred CCHHHHHHHHHHHhC
Q 001989 515 TTLEDVDKLFIVFAG 529 (985)
Q Consensus 515 ~t~edId~li~aL~~ 529 (985)
||+||||+|+++|+.
T Consensus 387 Nt~edid~l~~aL~~ 401 (405)
T COG0520 387 NTEEDVDRLLEALKK 401 (405)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999975
No 24
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=99.97 E-value=2.1e-30 Score=285.40 Aligned_cols=349 Identities=17% Similarity=0.210 Sum_probs=248.9
Q ss_pred ccccc-ccccCCCcc--ccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHH
Q 001989 591 MIPLG-SCTMKLNAT--TEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMV 667 (985)
Q Consensus 591 ~~~lG-~~t~~~~~~--~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~a 667 (985)
|+||. +.|+++.+. ..+++.....|.| |......-.-.++++++.++.+++++|+++..++++||++ |+.+++
T Consensus 2 miYlD~~ATTp~~~~v~~~m~~~~~~~fgN--PsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~T--EsnNla 77 (386)
T COG1104 2 MIYLDNAATTPVDPEVLEAMLPYLTEVFGN--PSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGAT--ESNNLA 77 (386)
T ss_pred cccccccccCCCCHHHHHHHHHHHHhhcCC--ccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCc--HHHHHH
Confidence 67888 466666654 3444444445655 2221122345788999999999999999987666655543 355666
Q ss_pred HHHHHH-hcCCCCCCEEEEcCCCCcccHHHHH---HCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cc
Q 001989 668 IRAYHK-ARGDHHRNVCIIPVSAHGTNPATAA---MCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-TH 742 (985)
Q Consensus 668 ir~~~~-~~g~~~~~~IIv~~~~Hg~~~~~a~---~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~ 742 (985)
++.... .+...++.+||++...|.+....++ ..|++|.++|+|.+|.+|+++|+++|+ ++|.+|.+.+.| .+
T Consensus 78 I~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~---~~T~LVSim~aNnE~ 154 (386)
T COG1104 78 IKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALR---PDTILVSIMHANNET 154 (386)
T ss_pred HHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcC---CCceEEEEEecccCe
Confidence 665211 1111256789999998876655544 469999999999999999999999998 899999999985 79
Q ss_pred cccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCCCCCC-ceEEEEEccccc--CcC
Q 001989 743 GVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGP-GMGPIGVKKHLA--PFL 819 (985)
Q Consensus 743 G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGP-g~G~i~~~~~l~--~~l 819 (985)
|+++ ||++|+++|+++|++||||++|.++...+ ++..+++|++++|+||. +|| |+|++++++... +.+
T Consensus 155 G~IQ-pI~ei~~i~k~~~i~fHvDAvQa~Gkipi-~~~~~~vD~ls~SaHK~-------~GpkGiGaLyv~~~~~~~p~i 225 (386)
T COG1104 155 GTIQ-PIAEIGEICKERGILFHVDAVQAVGKIPI-DLEELGVDLLSFSAHKF-------GGPKGIGALYVRPGVRLEPLI 225 (386)
T ss_pred eecc-cHHHHHHHHHHcCCeEEEehhhhcCceec-cccccCcceEEeehhhc-------cCCCceEEEEECCCCccCcee
Confidence 9999 89999999999999999999998766654 56777899999999996 466 999999976432 333
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCC
Q 001989 820 PSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVN 898 (985)
Q Consensus 820 p~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~ 898 (985)
. |+. + .+++..+|.|+++ .++...++ .+..+.+.....+....+++|.++|.+ ...+...+..
T Consensus 226 ~----GGg-Q--E~g~RsGTenv~~----Ivg~~~A~-----~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~ 289 (386)
T COG1104 226 H----GGG-Q--ERGLRSGTENVPG----IVGFGKAA-----EIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDD 289 (386)
T ss_pred c----cCc-C--CCCCCCCCccHHH----HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCc
Confidence 2 221 1 1122345555542 32222211 122344555566777888889999986 3555554432
Q ss_pred -CceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC---CCC----C-------------CCCEEEEeccCCCCHHH
Q 001989 899 -GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT---MSW----P-------------VPGTLMIEPTESESKSW 957 (985)
Q Consensus 899 -~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~---~~~----p-------------~~~~lris~t~~~t~ee 957 (985)
....|.+.+.|+ +++++.+.-.|..+||.+++ |+. | ..+.||||++..+|+||
T Consensus 290 ~~rlP~~~~~~f~------gv~gE~ll~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~ee 363 (386)
T COG1104 290 EPRLPNILNFSFP------GVEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEE 363 (386)
T ss_pred ccCCCCeEEEEeC------CCcHHHHHHhccccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHH
Confidence 234456677876 68899999999999999864 321 2 13889999999999999
Q ss_pred HHHHHccCChhHHHHhhccCCc
Q 001989 958 TGIVMLSSPSEKKLHRLKMGRQ 979 (985)
Q Consensus 958 Id~~~~~~~l~~~~~~~~~~~~ 979 (985)
||+ +++.+++++++++...+
T Consensus 364 i~~--~~~~l~~~i~~lr~~~~ 383 (386)
T COG1104 364 IDA--AAEALKEIIKRLRELSP 383 (386)
T ss_pred HHH--HHHHHHHHHHHHhhhcc
Confidence 999 88999999999987443
No 25
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-29 Score=288.62 Aligned_cols=367 Identities=18% Similarity=0.190 Sum_probs=252.9
Q ss_pred HHHHHHHHHHhccccCcccccccccc-cccCCCcc-ccccc-cccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCC
Q 001989 571 HELLRYIHLLQSKELSLCHSMIPLGS-CTMKLNAT-TEMMP-VTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGF 647 (985)
Q Consensus 571 ~e~~~~l~~l~~~~~~~~~~~~~lG~-~t~~~~~~-~~~~~-~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~ 647 (985)
..++..+..+.+.. ....++|.+ ++...+.. .+.+. .....+.|.|.... ...+...+.+++.++.+++++|.
T Consensus 6 ~~~r~~fp~l~~~~---~~~~vylD~aa~~~~p~~V~~a~~~~~~~~~an~~r~~~-~~~~~~t~~~e~aRe~va~~~~a 81 (405)
T COG0520 6 AAVRADFPALKREV---GKPLVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAH-TLAEEATDLYEAAREAVARFLNA 81 (405)
T ss_pred HHHHhhCHHHhhcc---CCCeEEecCcccccCCHHHHHHHHHHHHhhcCCcCcccc-hHHHHHHHHHHHHHHHHHHHhCC
Confidence 34666666666543 233567764 32222221 11111 11112333342222 34566778899999999999999
Q ss_pred Cc-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcCCCCCCCCHHHHHH
Q 001989 648 DS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGTDAKGNINIEELRK 722 (985)
Q Consensus 648 ~~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~d~~g~iD~e~L~~ 722 (985)
+. ..+.++.|++ ++..+.++.+... ..++|+||+++..|.+|... ++..|++++++|++++|.+|+|++++
T Consensus 82 ~~~~eIvft~~tT--~aln~va~~l~~~--~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~ 157 (405)
T COG0520 82 DSSDEIVFTRGTT--EALNLVARGLGRS--LKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEK 157 (405)
T ss_pred CCCCeEEEeCChh--HHHHHHHHHhhhh--hcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHH
Confidence 85 5555544443 1334444444211 24679999999999888544 45679999999999889999999999
Q ss_pred HHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCCC
Q 001989 723 AAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGG 801 (985)
Q Consensus 723 ~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~ 801 (985)
+++ ++|++|.+++. |.+|++. |+++|+++||++|++++||++|..++..+ +..++|+|++++|+||||
T Consensus 158 ~i~---~~Tklvais~vSn~tG~~~-pv~~I~~la~~~ga~v~VDaaq~~~h~~i-dv~~l~~Df~afsgHKwl------ 226 (405)
T COG0520 158 LIT---PKTKLVALSHVSNVTGTVN-PVKEIAELAHEHGALVLVDAAQAAGHLPI-DVQELGCDFLAFSGHKWL------ 226 (405)
T ss_pred hcC---CCceEEEEECccccccccc-hHHHHHHHHHHcCCEEEEECccccCccCC-CchhcCCCEEEEcccccc------
Confidence 998 89999999996 6799999 89999999999999999999998766654 667899999999999998
Q ss_pred CCC-ceEEEEEcccccCcCCCCccccC-CC---C--------CCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 802 GGP-GMGPIGVKKHLAPFLPSHPVVST-GG---I--------PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 802 GGP-g~G~i~~~~~l~~~lp~~~~g~~-~~---~--------~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
+|| |+|++++++++.+.+++...|+. .+ . ..++.+.+|.++.. ...+.+|..++. ..|+
T Consensus 227 ~gP~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~-----~i~l~aAl~~~~---~ig~ 298 (405)
T COG0520 227 LGPTGIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAG-----AIGLAAALDYLL---EIGM 298 (405)
T ss_pred cCCCceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHH-----HHhHHHHHHHHH---HHhH
Confidence 467 99999999998888755544431 10 0 11233555555542 222333444444 4556
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCeeecCCCC-ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC---CCCC----
Q 001989 869 TEASKIAILNANYMAKRLEKHYPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT---MSWP---- 940 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~-~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~---~~~p---- 940 (985)
.++.++..++++|+.++|++...+...++.. .....+.+.++ ++++.++++.|.++||.+.. +..|
T Consensus 299 ~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~------~~~~~dv~~~L~~~gI~vr~g~~ca~p~~~~ 372 (405)
T COG0520 299 EAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVK------GIHPHDVATLLDEKGIAVRAGHHCAQPLHRL 372 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeC------CCCHHHHHHHHHhCCeEEEeccccccHHHHh
Confidence 6777788999999999999854443333321 22333455554 67899999999999987653 2223
Q ss_pred --CCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 941 --VPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 941 --~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
+.+.+|+|+..+||+||||+ +++.|+++.+
T Consensus 373 ~~~~~~iR~S~~~YNt~edid~--l~~aL~~~~~ 404 (405)
T COG0520 373 LGVDATIRASLHLYNTEEDVDR--LLEALKKALA 404 (405)
T ss_pred cCCCCceEEEEeecCCHHHHHH--HHHHHHHHhh
Confidence 34669999999999999999 7788877653
No 26
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=99.96 E-value=2.7e-27 Score=275.38 Aligned_cols=359 Identities=16% Similarity=0.105 Sum_probs=257.4
Q ss_pred HHHHHHHHHHhcC----CCccceecCCCCCCCCCcHHHHHHHHhCCcccccc--CCC--hhhHhhhHHHHHHHHHHHHHH
Q 001989 151 SQMIEHMQKLASM----NKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQY--TPY--QAEIAQGRLESLLNFQTMIAD 222 (985)
Q Consensus 151 ~e~~~~~~~l~~~----n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~--~py--q~e~sqg~l~~i~e~q~~ia~ 222 (985)
..++.++..+... ...|.++-+.+. .|..+.+.+.. |+..+ .|. ....++-..+.+.++++.+|+
T Consensus 6 ~~~r~~fp~~~~~~~~~~~iYld~a~~~~----~~~~v~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~ 78 (406)
T PRK09295 6 EKVRADFPVLSREVNGLPLAYLDSAASAQ----KPSQVIDAEAE---FYRHGYAAVHRGIHTLSAQATEKMENVRKQAAL 78 (406)
T ss_pred HHHHhhCccccCcCCCCceEEEeCccccc----CCHHHHHHHHH---HHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 3455666655321 134555555553 55555444332 22211 121 223445567888899999999
Q ss_pred hcCC-CCcceeeccchHHHHHHHHHHhhh-hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhh
Q 001989 223 LTGL-PMSNASLLDEGTAAAEAMAMCNNI-QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDID 292 (985)
Q Consensus 223 L~g~-~~~~~sl~~~~ta~~ea~~~a~~~-~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~ 292 (985)
++|. ++.++.+++|+|.++..++.++.. ..++||+||+++.+|++....|..+++..|++++.++. ++++
T Consensus 79 ~~~~~~~~~v~~t~g~t~~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~ 158 (406)
T PRK09295 79 FINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLP 158 (406)
T ss_pred HcCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHH
Confidence 9998 567899999999877765544311 12378999999999999998888877778999988753 4566
Q ss_pred c-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecCccccccCCCCCCc
Q 001989 293 Y-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSAQRFGVPMGYGGPH 369 (985)
Q Consensus 293 ~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~k~lg~P~~~GGP~ 369 (985)
+ ++++|++|++++| |.+|.+.|+++|+++||++|++++||+ .+++|... +..++|+|++++|++|+.+| +|
T Consensus 159 ~~i~~~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~-a~~~g~~~~~~~~~~~D~~~~s~~K~~gp-----~G 232 (406)
T PRK09295 159 ALFDERTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDG-AQAVMHHPVDVQALDCDFYVFSGHKLYGP-----TG 232 (406)
T ss_pred HhcCCCcEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEc-ccccCccccCchhcCCCEEEeehhhccCC-----CC
Confidence 6 7788999999997 789999999999999999999999953 34555432 34678999999999556434 45
Q ss_pred EEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHH
Q 001989 370 AAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQR 449 (985)
Q Consensus 370 ~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~ 449 (985)
+|++++++++++.+|+...|++.......... ...++...|++.||+|+ .++.++.+++ .++...|++++.++
T Consensus 233 ~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~r~e~GT~~~---~~~~~l~~al--~~~~~~g~~~i~~~ 305 (406)
T PRK09295 233 IGILYVKEALLQEMPPWEGGGSMIATVSLTEG--TTWAKAPWRFEAGTPNT---GGIIGLGAAL--DYVSALGLNNIAEY 305 (406)
T ss_pred cEEEEEchHhHhhCCCcccCCceeeeeecCCc--cccCCchhhcCCCCccH---HHHHHHHHHH--HHHHHhCHHHHHHH
Confidence 89999999998889876655432100000000 11123345778999998 4666777776 55556689999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEcCC-CCcceEEEecCC--HHHHHHHHHHcCceeeee------------cCCeEEEEeccC
Q 001989 450 VHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCAD--AHAIASAAYKIEMNLRVV------------DSNTVTASFDET 514 (985)
Q Consensus 450 ~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~------------~~~~lris~t~~ 514 (985)
+.+++++++++|+++.+++++.+ .....++|..++ +.++.+.|.++||.++.- .++.+|+|++.+
T Consensus 306 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~y 385 (406)
T PRK09295 306 EQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMY 385 (406)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCceEEEEEECCcCHHHHHHHHHhCCeEEeccccchHHHHHHHCCCCEEEEEccCC
Confidence 99999999999999844988753 234567777765 788999999999987531 136799999999
Q ss_pred CCHHHHHHHHHHHhC
Q 001989 515 TTLEDVDKLFIVFAG 529 (985)
Q Consensus 515 ~t~edId~li~aL~~ 529 (985)
||++|||+|+++|++
T Consensus 386 nt~~did~l~~~l~~ 400 (406)
T PRK09295 386 NTHEEVDRLVAGLQR 400 (406)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999974
No 27
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=99.96 E-value=1.1e-26 Score=266.89 Aligned_cols=356 Identities=17% Similarity=0.188 Sum_probs=244.4
Q ss_pred CCCHHHHHHHHHHHhccccCcccccccccc-cccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHh
Q 001989 567 YHTEHELLRYIHLLQSKELSLCHSMIPLGS-CTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTIT 645 (985)
Q Consensus 567 ~~se~e~~~~l~~l~~~~~~~~~~~~~lG~-~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~ 645 (985)
+++|+|++++|+.+.++|..+.+ +||+ +|+..+...+.+...... ++..+ ...++..++++++++++++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~la~~~ 72 (371)
T PRK13520 1 GLSEEEILEELEEYRSEDLKYER---ILSSMCTEPHPIARKAHEMFLET----NLGDP-GLFPGTAKLEEEAVEMLGELL 72 (371)
T ss_pred CCCHHHHHHHHHHHHhcCCCHHH---eeeeeecCchHHHHHHHHHHHhc----CCCCc-ccCccHHHHHHHHHHHHHHHh
Confidence 46899999999999999988763 4897 655554433322211111 11111 113467778889999999999
Q ss_pred CCCcc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCCCCHHHHHHHH
Q 001989 646 GFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAA 724 (985)
Q Consensus 646 G~~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~iD~e~L~~~i 724 (985)
|++.. .++.++|+++++.++.+++.. ...++++||+++..|.++...++..|++++.+|.++++.+|+++|+++|
T Consensus 73 g~~~~~~~~~~ggt~a~~~a~~~~~~~----~~~~~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i 148 (371)
T PRK13520 73 HLPDAYGYITSGGTEANIQAVRAARNL----AKAEKPNIVVPESAHFSFDKAADMLGVELRRAPLDDDYRVDVKAVEDLI 148 (371)
T ss_pred CCCCCCeEEecCcHHHHHHHHHHHHhh----ccCCCceEEecCcchHHHHHHHHHcCceEEEecCCCCCcCCHHHHHHHH
Confidence 98764 355567777765554444321 1124678999998888877777888999999999888999999999999
Q ss_pred HhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC------CCCccCCcEEEeCCcccccc
Q 001989 725 EANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT------SPGYIGADVCHLNLHKTFCI 797 (985)
Q Consensus 725 ~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~------~pg~~g~Di~~~s~hK~l~~ 797 (985)
+ +++++|++.++ |.+|.+. |+++|+++|+++|+++|||++|..+..++. .....++|.+++++|||...
T Consensus 149 ~---~~~~~vi~~~~~~~tG~~~-~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a 224 (371)
T PRK13520 149 D---DNTIGIVGIAGTTELGQVD-PIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLA 224 (371)
T ss_pred h---hCCEEEEEEcCCcCCcccC-CHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCc
Confidence 8 67877777776 4699998 899999999999999999999853221111 11235789999999997642
Q ss_pred cCCCCCCceEEEEE-cccccCcCC---CCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHH
Q 001989 798 PHGGGGPGMGPIGV-KKHLAPFLP---SHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASK 873 (985)
Q Consensus 798 p~g~GGPg~G~i~~-~~~l~~~lp---~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~ 873 (985)
|.++|++++ ++++.+.+. +...+. ...... +++.+ ..+.++++.+..++.+|+++..+
T Consensus 225 -----~~~~G~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~---gt~~~--~~~~~~~~al~~l~~~g~~~~~~ 286 (371)
T PRK13520 225 -----PIPAGGILFRDESYLDALAVDTPYLTSK--------KQATLT---GTRSG--AGVAATYAVMKYLGREGYRKVVE 286 (371)
T ss_pred -----cCCceEEEEcCHHHHHhhcccCccccCC--------CCcceE---eeccC--hHHHHHHHHHhhhcHhHHHHHHH
Confidence 224454554 444544432 111110 000000 01111 22445677888888999988899
Q ss_pred HHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCC
Q 001989 874 IAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTES 952 (985)
Q Consensus 874 ~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~ 952 (985)
+..++++++.++|++ ++++.+ .+ ..+.+.+.++ +..++.++|.++||.+..+.. ++.+||+++.+
T Consensus 287 ~~~~~~~~l~~~L~~~g~~~~~-~~---~~~~v~~~~~--------~~~~v~~~L~~~gi~v~~~~~--~~~iRis~~~~ 352 (371)
T PRK13520 287 RCMENTRWLAEELKERGFEPVI-EP---VLNIVAFDDP--------NPDEVREKLRERGWRVSVTRC--PEALRIVCMPH 352 (371)
T ss_pred HHHHHHHHHHHHHHhCCCEEec-CC---CceEEEEecC--------CHHHHHHHHHHCCceeccCCC--CCEEEEEEECC
Confidence 999999999999987 555332 21 2233444432 578999999999999876543 36899999999
Q ss_pred CCHHHHHHHHccCChhHHHH
Q 001989 953 ESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 953 ~t~eeId~~~~~~~l~~~~~ 972 (985)
+|++|||+ +++.|++++.
T Consensus 353 ~t~edi~~--~~~~l~~~~~ 370 (371)
T PRK13520 353 VTREHIEN--FLEDLKEVKK 370 (371)
T ss_pred CCHHHHHH--HHHHHHHHhh
Confidence 99999999 7788877654
No 28
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=99.95 E-value=5.3e-26 Score=264.21 Aligned_cols=359 Identities=16% Similarity=0.110 Sum_probs=256.1
Q ss_pred CCHHHHHHHHHHHhcCCCccceecCCCCCCCCCcHHHHHHHHhCCcccccc----CCChhhHhhhHHHHHHHHHHHHHHh
Q 001989 148 LTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQY----TPYQAEIAQGRLESLLNFQTMIADL 223 (985)
Q Consensus 148 ~se~e~~~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~----~pyq~e~sqg~l~~i~e~q~~ia~L 223 (985)
++-.++++++..+. .+..|.+.-+.|. .|..+.+.+.. |+..+ +.......+.+.+.+.++++.+|++
T Consensus 4 ~~~~~~r~~fp~l~-~~~~yld~a~~~~----~~~~v~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~ 75 (401)
T PRK10874 4 FNPAQFRAQFPALQ-DAGVYLDSAATAL----KPQAVIEATQQ---FYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQL 75 (401)
T ss_pred CCHHHHHHhCCCcC-CceEEEeCCcccC----CCHHHHHHHHH---HHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666542 3445655555553 55555433321 22211 1122234566778899999999999
Q ss_pred cCC-CCcceeeccchHHHHHHHHHHhhh-hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc
Q 001989 224 TGL-PMSNASLLDEGTAAAEAMAMCNNI-QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY 293 (985)
Q Consensus 224 ~g~-~~~~~sl~~~~ta~~ea~~~a~~~-~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~ 293 (985)
+|+ ++.++.+++|+|.++..++.++.. ..++||+||+++.+|++....|+.+++..|++++.++. +++++
T Consensus 76 ~g~~~~~~i~~~~~~t~~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~ 155 (401)
T PRK10874 76 LNAPDAKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPE 155 (401)
T ss_pred cCCCCCCEEEEECCHHHHHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHH
Confidence 999 677899999999888777655421 12388999999999999988888777778999988754 34555
Q ss_pred -cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEEecCccccccCCCCCCcE
Q 001989 294 -KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSAQRFGVPMGYGGPHA 370 (985)
Q Consensus 294 -l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~s~k~lg~P~~~GGP~~ 370 (985)
++++|++|++++| |.+|.+.|+++|+++||++|++++||. ..++|.. .+..++|+|++++|++|+.+| ||+
T Consensus 156 ~i~~~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~-a~~~g~~~~~~~~~~~d~~~~s~~K~~gp-----~G~ 229 (401)
T PRK10874 156 LITPRTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDG-AQGAVHFPADVQALDIDFYAFSGHKLYGP-----TGI 229 (401)
T ss_pred hcCcCcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEC-CcccccccCCchhcCCCEEEEecccccCC-----Ccc
Confidence 7889999999987 789999999999999999999999953 3444433 234678999999998445333 468
Q ss_pred EEEEEchhhHhcCCCceeeeee-cCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHH
Q 001989 371 AFLATSQEYKRMMPGRIVGVSI-DSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQR 449 (985)
Q Consensus 371 G~l~~~~~~~~~lp~~~vG~t~-d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~ 449 (985)
|++++++++++.+++...|.+. +. . .|. ....++...|.+.||.|+ ....++.+++ .++...|++++.++
T Consensus 230 G~l~~~~~~~~~~~~~~~~~~~~~~--~-~~~-~~~~~~~~~~~e~Gt~~~---~~~~al~~al--~~l~~~g~~~~~~~ 300 (401)
T PRK10874 230 GVLYGKSELLEAMSPWQGGGKMLTE--V-SFD-GFTPQSAPWRFEAGTPNV---AGVIGLSAAL--EWLADIDINQAESW 300 (401)
T ss_pred EEEEEchHHHhcCCCeecCCcceEe--e-ccC-ccCCCCChhhccCCCcCH---HHHHHHHHHH--HHHHHhCHHHHHHH
Confidence 9999999999888765433211 10 0 010 111123345667899998 5566667776 55556788889999
Q ss_pred HHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC--HHHHHHHHHHcCceeeee------------cCCeEEEEeccCC
Q 001989 450 VHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVV------------DSNTVTASFDETT 515 (985)
Q Consensus 450 ~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~------------~~~~lris~t~~~ 515 (985)
+.+++++++++|+++.|++++..+....+.|.+++ +.++.+.|.++||.++.. ..+.+|+|++.+|
T Consensus 301 ~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~n 380 (401)
T PRK10874 301 SRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGVHHSDLVTLLAEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYN 380 (401)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCcCHHHHHHHHHHCCcEEeccccchHHHHHHhCCCCEEEEEecccC
Confidence 99999999999999833887754333345566655 788999999999987541 1478999999999
Q ss_pred CHHHHHHHHHHHhC
Q 001989 516 TLEDVDKLFIVFAG 529 (985)
Q Consensus 516 t~edId~li~aL~~ 529 (985)
|++|||+|+++|.+
T Consensus 381 t~edid~ll~al~~ 394 (401)
T PRK10874 381 TQSDVDALVNAVDR 394 (401)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999974
No 29
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=99.95 E-value=6.4e-27 Score=269.04 Aligned_cols=327 Identities=21% Similarity=0.202 Sum_probs=244.4
Q ss_pred CCcHHHHHHHHhCCcccccc--CC--ChhhHhhhHHHHHHHHHHHHHHhcCCCC-cceeeccchHHHHHHHHHHhhhhcC
Q 001989 179 HVPPVILRNIMENPAWYTQY--TP--YQAEIAQGRLESLLNFQTMIADLTGLPM-SNASLLDEGTAAAEAMAMCNNIQKG 253 (985)
Q Consensus 179 ~~p~~v~~~i~~~~~~~t~~--~p--yq~e~sqg~l~~i~e~q~~ia~L~g~~~-~~~sl~~~~ta~~ea~~~a~~~~~~ 253 (985)
.+|..+.+++... +..+ +| .....+....+.+.++++.+++++|+++ .++.+.+++|.+++.++.++....+
T Consensus 10 ~~p~~v~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~~~ 86 (371)
T PF00266_consen 10 PMPKSVLEAISDY---LRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNPLK 86 (371)
T ss_dssp B-BHHHHHHHHHH---HHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHHGT
T ss_pred CCCHHHHHHHHHH---HHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccccccc
Confidence 4888887665532 1111 33 1223456677889999999999999998 8888999999888888776632124
Q ss_pred CCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHH
Q 001989 254 KKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAH 323 (985)
Q Consensus 254 ~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~ 323 (985)
+|++|+++..+|++...+|...++..|+++++++. +++++ +++++++|++++. |.+|.+.|+++|+++||
T Consensus 87 ~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~~I~~~~~ 166 (371)
T PF00266_consen 87 PGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNPDTRLVSISHVENSTGVRNPIEEIAKLAH 166 (371)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHTTESEEEEESBETTTTBBSSHHHHHHHHH
T ss_pred cccccccccccccccccccccccccchhhhccccccccchhhhhhhhhhhccccceEEeecccccccEEeeeceehhhhh
Confidence 88999999999999999998887778999988854 34556 7899999999875 78999999999999999
Q ss_pred hCCcEEEEEecCccccCC-CCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceee
Q 001989 324 ANGVKVVMATDLLALTIL-KPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRV 402 (985)
Q Consensus 324 ~~galliV~a~~~~lg~l-~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l 402 (985)
++|++++||+ .+++|.+ .+..++|+|++++++|||+ |+||+|++++++++.+++.+...|+..- .. ..+
T Consensus 167 ~~~~~~~vD~-~~~~g~~~id~~~~~~D~~~~s~~Kl~-----gp~G~g~l~v~~~~~~~~~p~~~~~~~~---~~-~~~ 236 (371)
T PF00266_consen 167 EYGALLVVDA-AQSAGCVPIDLDELGADFLVFSSHKLG-----GPPGLGFLYVRPEAIERLRPAKPGGGYL---DF-PSL 236 (371)
T ss_dssp HTTSEEEEE--TTTTTTSS--TTTTTESEEEEESTSTT-----SSSTEEEEEEEHHHHHHHHTSSSSSSTT---TH-HHH
T ss_pred ccCCceeEec-hhccccccccccccccceeeecccccC-----CCCchhhheehhhhhhcccccccccccc---cc-ccc
Confidence 9999999954 4566655 3557899999999995585 4467999999999998886666665210 00 000
Q ss_pred e-cccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC----CCcce
Q 001989 403 A-MQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL----PFFDT 477 (985)
Q Consensus 403 ~-l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~----~~~~~ 477 (985)
. ........|++.||.|+ ..++++..++ .++...|++++.++..++++++++.|+++++++++++ .....
T Consensus 237 ~~~~~~~~~~~~~~GT~~~---~~~~~l~~al--~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i 311 (371)
T PF00266_consen 237 QEYGLADDARRFEGGTPNV---PAIYALNEAL--KLLEEIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSI 311 (371)
T ss_dssp HHHCHHSTTTGSSSSS--H---HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTE
T ss_pred hhcccccccccccccceee---ehhhhHHHHH--hhhhccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccce
Confidence 0 00122344567789888 4555666665 5556779999999999999999999999976888642 12345
Q ss_pred EEEecCC--HHHHHHHHHHcCceeeee------------cCCeEEEEeccCCCHHHHHHH
Q 001989 478 VKVKCAD--AHAIASAAYKIEMNLRVV------------DSNTVTASFDETTTLEDVDKL 523 (985)
Q Consensus 478 ~~~~~~~--~~~v~~~L~~~GI~~~~~------------~~~~lris~t~~~t~edId~l 523 (985)
++|..++ +.++.+.|.++||.++.- ..+.+|+|++.+||+||||+|
T Consensus 312 ~~~~~~~~~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 312 VSFNLPGSDADDVVKYLEERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp EEEEETTSSHHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred EEEeecCCCHHHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence 7777666 899999999999987641 138999999999999999986
No 30
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.95 E-value=4.9e-26 Score=264.20 Aligned_cols=356 Identities=18% Similarity=0.126 Sum_probs=252.0
Q ss_pred HHHHHHHHHHhcCCCccceecCCCCCCCCCcHHHHHHHHhCCcccccc--CC--ChhhHhhhHHHHHHHHHHHHHHhcCC
Q 001989 151 SQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQY--TP--YQAEIAQGRLESLLNFQTMIADLTGL 226 (985)
Q Consensus 151 ~e~~~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~--~p--yq~e~sqg~l~~i~e~q~~ia~L~g~ 226 (985)
.+++.++..+. .+..|.+.-+.|. .|..+.+++.. |+..+ .| ......+-..+.+.++++.+|+++|+
T Consensus 4 ~~~r~~fp~l~-~~~iyld~a~~~~----~p~~v~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~ 75 (398)
T TIGR03392 4 AQFRQQFPALQ-DGTVYLDSAATAL----KPQAVIDATQQ---FYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNA 75 (398)
T ss_pred hHHHHhCCccC-CCeEEeeCccccC----CCHHHHHHHHH---HHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34555555432 2345655555553 55666544332 22111 12 11123444567788999999999999
Q ss_pred C-CcceeeccchHHHHHHHHHHhhh-hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cC
Q 001989 227 P-MSNASLLDEGTAAAEAMAMCNNI-QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KS 295 (985)
Q Consensus 227 ~-~~~~sl~~~~ta~~ea~~~a~~~-~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~ 295 (985)
+ +.++.+++|+|.++..++.++.. ..++||+||+++..|++....+...++..|++++.++. +++++ ++
T Consensus 76 ~~~~~i~~t~g~t~~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~ 155 (398)
T TIGR03392 76 PDAENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLT 155 (398)
T ss_pred CCCCeEEEeCChHHHHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhc
Confidence 5 67898999999887776655421 12378999999999999888887767778999988754 34555 78
Q ss_pred CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecCccccccCCCCCCcEEEE
Q 001989 296 GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSAQRFGVPMGYGGPHAAFL 373 (985)
Q Consensus 296 ~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l 373 (985)
++|++|++++| |.+|.+.|+++|+++||++|++++||+ ..+++... +..++++|++++|++|+.+| +|+|++
T Consensus 156 ~~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~-a~~~~~~~~~~~~~~~d~~~~s~~K~~gp-----~G~G~l 229 (398)
T TIGR03392 156 PRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDG-AQGVVHGPPDVQALDIDFYAFSGHKLYGP-----TGIGVL 229 (398)
T ss_pred cCceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEh-hhhcCCCCCChhhcCCCEEEEecccccCC-----CceEEE
Confidence 88999999987 789999999999999999999999953 33444332 33568999999999445333 458999
Q ss_pred EEchhhHhcCCCceeeeee-cCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHH
Q 001989 374 ATSQEYKRMMPGRIVGVSI-DSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHG 452 (985)
Q Consensus 374 ~~~~~~~~~lp~~~vG~t~-d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~ 452 (985)
++++++++.+++...|... +..... ....++.+.|++.||+|+ .+..++.+++ .++...|++++.+++.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~e~GT~~~---~~~~a~~~al--~~l~~~g~~~i~~~~~~ 300 (398)
T TIGR03392 230 YGKTELLEAMPPWQGGGKMLSHVSFD----GFIPQAVPHRFEAGTPNI---AGVIGLSAAL--EWLTDIDIAAAEAWSVS 300 (398)
T ss_pred EEcHHHHhhCCCeecCCceEeecccc----ccccCCChhhccCCCCCH---HHHHHHHHHH--HHHHHhCHHHHHHHHHH
Confidence 9999999888765433221 100000 111233445678899998 5566667766 55556688899999999
Q ss_pred HHHHHHHHHhcCCCeEEcCCCCcceEEEecCC--HHHHHHHHHHcCceeeeec------------CCeEEEEeccCCCHH
Q 001989 453 LAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVVD------------SNTVTASFDETTTLE 518 (985)
Q Consensus 453 ~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~~------------~~~lris~t~~~t~e 518 (985)
+++++++.|+++.++++...+....++|..++ +.++.+.|.++||.++... ++.+|+|++.+||++
T Consensus 301 l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ 380 (398)
T TIGR03392 301 LADLAEERLAQLPGFRSFRCPGSSLLAFDFAGVHHSDLAALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQ 380 (398)
T ss_pred HHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCcCHHHHHHHHHhCCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHH
Confidence 99999999999844887744333356666655 7889999999999885321 468999999999999
Q ss_pred HHHHHHHHHhC
Q 001989 519 DVDKLFIVFAG 529 (985)
Q Consensus 519 dId~li~aL~~ 529 (985)
|||+|+++|+.
T Consensus 381 ei~~l~~~l~~ 391 (398)
T TIGR03392 381 DVDALVDAVGA 391 (398)
T ss_pred HHHHHHHHHHH
Confidence 99999999974
No 31
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=99.95 E-value=4.3e-26 Score=266.78 Aligned_cols=310 Identities=17% Similarity=0.124 Sum_probs=235.3
Q ss_pred hhhHHHHHHHHHHHHHHhcCCC-CcceeeccchHHHHHHHHHHhhh-hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001989 206 AQGRLESLLNFQTMIADLTGLP-MSNASLLDEGTAAAEAMAMCNNI-QKGKKKTFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 206 sqg~l~~i~e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~~a~~~-~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v 283 (985)
+.-..+.+.++++.+|+++|++ +.++.++.|+|.++..++.++.. ..++|++|+++..+|++....|+.+++..|+++
T Consensus 71 ~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v 150 (424)
T PLN02855 71 SAKATDAYELARKKVAAFINASTSREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVL 150 (424)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEE
Confidence 3445567889999999999996 46899999999877766544311 123789999999999999999988777789998
Q ss_pred EEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEE
Q 001989 284 VVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIV 352 (985)
Q Consensus 284 ~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~ 352 (985)
+.++. +++++ ++++|++|+++++ |.+|.+.|+++|+++||++|++++||+ .++.|.. .+..++|+|++
T Consensus 151 ~~v~~~~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~-a~~~g~~~~~~~~~~~d~~ 229 (424)
T PLN02855 151 KFVGLTPDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDA-CQSVPHMPVDVQTLGADFL 229 (424)
T ss_pred EEEecCCCCCcCHHHHHHHhccCceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEh-hhhcCCcCCCchhcCCCEE
Confidence 88754 34556 7789999999987 789999999999999999999999953 3344433 23467899999
Q ss_pred EecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 353 VGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 353 v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
+++++|+.+| +|+|++++++++++++++.+.|++.... . |......++.+.|++.||+|+ .+..++.++
T Consensus 230 ~~s~~K~~gp-----~G~G~l~~~~~~~~~~~p~~~g~~~~~~--~-~~~~~~~~~~~~r~e~GT~~~---~~~~~l~~a 298 (424)
T PLN02855 230 VASSHKMCGP-----TGIGFLWGKSDLLESMPPFLGGGEMISD--V-FLDHSTYAPPPSRFEAGTPAI---GEAIGLGAA 298 (424)
T ss_pred EeecccccCC-----CccEEEEEchhhhhcCCCEecCCCceee--e-ecCccccCCChhhccCCChHH---HHHHHHHHH
Confidence 9999556433 4689999999999999887766532100 0 100000123345678899998 456666666
Q ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC------CCcceEEEecCC--HHHHHHHHHHc-Cceeeee-
Q 001989 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL------PFFDTVKVKCAD--AHAIASAAYKI-EMNLRVV- 502 (985)
Q Consensus 433 ~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~------~~~~~~~~~~~~--~~~v~~~L~~~-GI~~~~~- 502 (985)
+ .++...|++++.+++.+++++++++|+++.+++++.+ ...+.++|..++ +.++.+.|.++ ||.++.-
T Consensus 299 l--~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~~~~~v~~~L~~~~gI~v~~g~ 376 (424)
T PLN02855 299 I--DYLSEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGIHPTDLSTFLDQQHGVAIRSGH 376 (424)
T ss_pred H--HHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCcCHHHHHHHhcccCCEEEechh
Confidence 6 5666679999999999999999999999834998843 123467777765 78899999887 9987531
Q ss_pred -----------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 -----------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -----------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++.+|+|++.+||.+|||+|+++|++
T Consensus 377 ~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~ 414 (424)
T PLN02855 377 HCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKD 414 (424)
T ss_pred hhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHH
Confidence 136799999999999999999999974
No 32
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=99.95 E-value=6.3e-25 Score=253.89 Aligned_cols=379 Identities=15% Similarity=0.108 Sum_probs=256.2
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCcc-cccccccc-ccccccCCCCchhhhhhHHHHHHHH
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNAT-TEMMPVTW-PSFANIHPFAPADQAQGYQEMFNNL 637 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~-~~~~~~~~-~~f~~~~p~~p~e~~~G~~~~~~e~ 637 (985)
++| +++.+.+|+++.+...--.|... ...++|++|++..+. .+.+...+ ..+. +|. .+....++++++
T Consensus 16 ~~p--~~~~~~~~~~~~~~~~iyld~~a--~~~~~~~~tt~~~p~~~~~~~~~l~~~~~--np~----s~~~~~~le~~~ 85 (431)
T TIGR01788 16 RMP--EEEMPPDAAYQLIHDELSLDGNP--RLNLATFVTTWMEPEARKLMDETINKNMI--DKD----EYPQTAEIENRC 85 (431)
T ss_pred cCC--CCCCCHHHHHHHHHHHhhhcCCc--ceeeeeeeCCCCCHHHHHHHHHHHhcCCC--Ccc----cCccHHHHHHHH
Confidence 567 68899999999998765444322 356778887765543 22222111 1222 222 234455899999
Q ss_pred HHHHHHHhCCC-c--cc-ee-cCcHHHHHHHHHHHHHHHHHh----cCC-CCCCEEEEcCCCCcccHHHHHHCCcEEEEE
Q 001989 638 GEWLCTITGFD-S--FS-LQ-PNAGAAGEYAGLMVIRAYHKA----RGD-HHRNVCIIPVSAHGTNPATAAMCGMKIVSV 707 (985)
Q Consensus 638 ~~~la~l~G~~-~--~~-~~-~~sGa~a~~a~l~air~~~~~----~g~-~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v 707 (985)
++|+++++|++ . .. +. .++|++++..++.++|..... .|. ..+..|++++.+|.+..+.++..|++++.|
T Consensus 86 ~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i 165 (431)
T TIGR01788 86 VNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYFDVELREV 165 (431)
T ss_pred HHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEE
Confidence 99999999998 2 22 22 456666665555555432111 111 013479999999999888888899999999
Q ss_pred cCCCC-CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHc------CCEEEEEccccccccCCC--
Q 001989 708 GTDAK-GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDN------GGQVYMDGANMNAQVGLT-- 777 (985)
Q Consensus 708 ~~d~~-g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~------galliVD~a~~~~~~~l~-- 777 (985)
|+|++ +.+|+++|+++|+ ++|.+|+++..| .+|.++ ||++|+++|+++ |+++|||+||..+...+.
T Consensus 166 ~~d~~~~~vd~~~L~~~i~---~~t~lV~~t~g~t~tG~id-pi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~ 241 (431)
T TIGR01788 166 PMDPGRYVIDPEQVVEAVD---ENTIGVVCILGTTYTGEYE-DVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYP 241 (431)
T ss_pred ecCCCceeeCHHHHHHHHh---hCCeEEEEEeCCCCCcccC-CHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCC
Confidence 99876 5999999999998 789999999886 599999 899999999999 999999999852221110
Q ss_pred ----CCCccCCcEEEeCCcccccccCCCCCCceEEEEEccc--ccCcCCC--CccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 778 ----SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--LAPFLPS--HPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 778 ----~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~--l~~~lp~--~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
+....++|.+++|+|||+. |.+|+|++++++. +.+.+.. .+.+... .. ..+..+..|
T Consensus 242 ~~~~~~~~~~~DSis~s~HK~~~-----~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~------~~---~t~~~sR~g- 306 (431)
T TIGR01788 242 DLEWDFRLPRVKSINVSGHKYGL-----VYPGVGWVIWRDEEALPEELIFHVNYLGGDE------PT---FTLNFSRPA- 306 (431)
T ss_pred CchhhcCCCCceEEEECchhccC-----CCCCcEEEEEeChHHcchhheecccccCCCC------CC---cceecCchH-
Confidence 1124578999999999963 3347899999864 3232210 0111100 00 011111111
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL 927 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L 927 (985)
..++..|..|..+|.+|++++.++.+++++++.++|++ +++++.++ +..+.+.+.+++.. +.+.+..++.++|
T Consensus 307 -~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~---~~~~iV~Fr~~~~~-~~~~~~~~l~~~L 381 (431)
T TIGR01788 307 -NQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDG---SGIPLVAFKLKDDA-DPGYTLYDLSHRL 381 (431)
T ss_pred -HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCC---CCceEEEEEeCCCC-CCCcCHHHHHHHH
Confidence 12345799999999999999999999999999999986 35554321 23444556554210 1135678999999
Q ss_pred HHCCCccCCCCCC--CC--CEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 928 MDYGFHGPTMSWP--VP--GTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 928 ~~~Gi~~~~~~~p--~~--~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.++||.+.....| +. -.+|+++....+++-+|+ |++.|++++..+
T Consensus 382 ~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~--~~~~~~~~~~~~ 430 (431)
T TIGR01788 382 RERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAEL--LIEDIEAALAYL 430 (431)
T ss_pred HHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHH--HHHHHHHHHHhh
Confidence 9999986543333 21 358999998999999999 888888888765
No 33
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=99.95 E-value=1.4e-25 Score=247.35 Aligned_cols=292 Identities=16% Similarity=0.162 Sum_probs=226.9
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHH--hhhh-cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001989 207 QGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMC--NNIQ-KGKKKTFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a--~~~~-~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v 283 (985)
.-..+++.++++.+|+++|+++.++.+++|||.+...++.. .... +++|++||++..+||+++..++.+ +..|++|
T Consensus 40 ~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~L-e~~g~~V 118 (386)
T COG1104 40 REARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYL-ERQGFEV 118 (386)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHH-HhcCCeE
Confidence 34578999999999999999999999999999554444432 1111 236889999999999999999987 6789999
Q ss_pred EEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEE
Q 001989 284 VVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIV 352 (985)
Q Consensus 284 ~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~ 352 (985)
.++++ ++|++ ++++|.+|.|.+. |.+|+++||++|+++||++|++|+||+ ..++|-+ .++.++|+|++
T Consensus 119 tyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDA-vQa~Gkipi~~~~~~vD~l 197 (386)
T COG1104 119 TYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDA-VQAVGKIPIDLEELGVDLL 197 (386)
T ss_pred EEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEeh-hhhcCceeccccccCcceE
Confidence 99876 46777 8999999999986 689999999999999999999999964 4577755 35678899999
Q ss_pred EecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 353 VGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 353 v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
..|+++|++|. |.|++|+++.. .+.+.+.|. .+ |. .+-.||.|+ .+..++..|
T Consensus 198 s~SaHK~~Gpk-----GiGaLyv~~~~--~~~p~i~GG------gQ---------E~--g~RsGTenv---~~Ivg~~~A 250 (386)
T COG1104 198 SFSAHKFGGPK-----GIGALYVRPGV--RLEPLIHGG------GQ---------ER--GLRSGTENV---PGIVGFGKA 250 (386)
T ss_pred EeehhhccCCC-----ceEEEEECCCC--ccCceeccC------cC---------CC--CCCCCCccH---HHHHHHHHH
Confidence 99999997764 47899997654 245666662 22 11 122699998 566666666
Q ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC-CCeEEcCC--CC-cceEEEecCC--HHHHHHHHHHcCceeee-----
Q 001989 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL-GTVEVQGL--PF-FDTVKVKCAD--AHAIASAAYKIEMNLRV----- 501 (985)
Q Consensus 433 ~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~-g~~~~~~~--~~-~~~~~~~~~~--~~~v~~~L~~~GI~~~~----- 501 (985)
+. +..+.++....+...+-++|.++|.+. +.+.+.+. ++ .+.+.|.+++ ++.+.-.|..+||.++.
T Consensus 251 ~~---~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv~gE~ll~~L~~~gI~vStGSACs 327 (386)
T COG1104 251 AE---IAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVEGESLLLALDLAGIAVSTGSACS 327 (386)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCCcHHHHHHhccccCeEEecccccc
Confidence 53 334567778888889999999999976 44666543 22 3567788887 88888899889998742
Q ss_pred --------------e----cCCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001989 502 --------------V----DSNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 502 --------------~----~~~~lris~t~~~t~edId~li~aL~~~ 530 (985)
. -.+.||+|++.+||+||||+++++|.+.
T Consensus 328 S~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~ 374 (386)
T COG1104 328 SGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEI 374 (386)
T ss_pred CCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 0 1378999999999999999999999853
No 34
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=99.94 E-value=1.1e-24 Score=253.35 Aligned_cols=308 Identities=18% Similarity=0.135 Sum_probs=229.5
Q ss_pred hhHHHHHHHHHHHHHHhcCCC-CcceeeccchHHHHHHHHHHhhhh-cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001989 207 QGRLESLLNFQTMIADLTGLP-MSNASLLDEGTAAAEAMAMCNNIQ-KGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~~a~~~~-~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~ 284 (985)
.-+.+.+.++++.+|+++|++ +.++.+++|+|.++..+..++... .++|++||+++.+|++....|+.+++..|++++
T Consensus 58 ~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~ 137 (403)
T TIGR01979 58 VRATEAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLK 137 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEE
Confidence 334567889999999999998 568989999998776666554211 237899999999999999888877777899988
Q ss_pred EeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEE
Q 001989 285 VSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVV 353 (985)
Q Consensus 285 ~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v 353 (985)
.++. +++++ ++++|++|++++| |.+|.+.|+++|+++||++|++++||. .++.|.+ .+..++|+|+++
T Consensus 138 ~v~~~~~~~~~~~~l~~~i~~~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~-a~~~g~~~~~~~~~~~d~~~ 216 (403)
T TIGR01979 138 FIPLDDDGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDG-AQAVPHMPVDVQALDCDFYV 216 (403)
T ss_pred EEecCCCCCCCHHHHHHHhccCCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEc-hhhcCccccCccccCCCEEE
Confidence 8754 34555 7889999999987 789999999999999999999999953 3455543 234678999999
Q ss_pred ecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeee-cccccccccccccCCCccchhHHHHHHHH
Q 001989 354 GSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVA-MQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 354 ~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~-l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
++++|+.+| +|+|++++++++.+.+++...|+.... .+.+. ...+....|++.||+|+ ..+.++.++
T Consensus 217 ~s~~K~~gp-----~G~g~l~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~gt~~~---~~~~al~~a 284 (403)
T TIGR01979 217 FSGHKMYGP-----TGIGVLYGKEELLEQMPPFLGGGEMIA----EVSFEETTYNEAPHKFEAGTPNI---AGVIGLGAA 284 (403)
T ss_pred EecccccCC-----CCceEEEEchHHHhcCCCeecCCCcee----ecccCccccCCChhhcCCCCccH---HHHHHHHHH
Confidence 999445333 458999999999888877665542110 00000 00011223456788876 445555555
Q ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC----CcceEEEecCC--HHHHHHHHHHcCceeeee----
Q 001989 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP----FFDTVKVKCAD--AHAIASAAYKIEMNLRVV---- 502 (985)
Q Consensus 433 ~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~----~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~---- 502 (985)
+ .++...|++++.+++.+++++++++|+++++++++.+. ....+.|.+++ ..++.+.|.++||.++..
T Consensus 285 l--~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~g~~~~ 362 (403)
T TIGR01979 285 I--DYLEAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEGVHPHDVGTILDEEGIAVRSGHHCA 362 (403)
T ss_pred H--HHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeCCcCHHHHHHHHhhCCEEEcchhhhh
Confidence 4 55556688999999999999999999988449987432 23456666665 778999999999987531
Q ss_pred --------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 --------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 --------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++.+|+|++.+||++|+|+|+++|+.
T Consensus 363 ~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~ 397 (403)
T TIGR01979 363 QPLMRRFGVPATCRASFYIYNTEEDIDALVEALKK 397 (403)
T ss_pred HHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHH
Confidence 147899999999999999999999973
No 35
>PLN03032 serine decarboxylase; Provisional
Probab=99.94 E-value=1.2e-24 Score=246.64 Aligned_cols=293 Identities=17% Similarity=0.184 Sum_probs=210.3
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccc---eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDSFS---LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~~~---~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
..+.++++++.+++++++|++... ++.++|++++..++.++|.+ .++.+|+++..+|.+..++++..|+++
T Consensus 62 ~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~------~~~~~vi~s~~~H~Sv~kaa~~lg~~~ 135 (374)
T PLN03032 62 VHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREV------FPDGILYASRESHYSVFKAARMYRMEA 135 (374)
T ss_pred ccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHh------CCCcEEEeCCCceeHHHHHHHHcCCCC
Confidence 467899999999999999997632 55666777775555544432 134579999999999999999999999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcC-----CEEEEEccccccccCCCC
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNG-----GQVYMDGANMNAQVGLTS 778 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~g-----alliVD~a~~~~~~~l~~ 778 (985)
+.||+|++|.+|+++|+++|++...++.+|+++..| .+|.++ |+++|+++|+++| +|+|||+|+..+...+..
T Consensus 136 ~~V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~id-pi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~ 214 (374)
T PLN03032 136 VKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVD-DLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVS 214 (374)
T ss_pred eEeeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCC-CHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccC
Confidence 999999999999999999998422257788888775 599999 9999999999997 589999998543333210
Q ss_pred -----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCC--ccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 779 -----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSH--PVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 779 -----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~--~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
....++|.+++|+||+++.|+ |+|++++++.....+... ++.. . . ..+.++..| .
T Consensus 215 ~~~~~~~~~~vDSis~s~HK~~g~P~-----g~G~ll~r~~~~~~~~~~~~Yl~~-~-------d---~ti~gSR~g--~ 276 (374)
T PLN03032 215 RAPEVTFRKPIGSVSVSGHKFLGCPM-----PCGVALTRKKHVKALSQNVEYLNS-R-------D---ATIMGSRNG--H 276 (374)
T ss_pred CCcccCCCcCCcEEEECcccccCCCc-----CeEEEEEEchhhHhhccCCcccCC-C-------C---CcccCCCch--H
Confidence 123469999999999875443 678899987654433211 1110 0 0 112222211 3
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY 930 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~ 930 (985)
.++..|+.|..+|.+|++++.++++++++|+.++|++ ++.+.. + +....+++..+ ..+. + .+
T Consensus 277 ~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~-~---p~~~~V~f~~~--------~~~~----~-~~ 339 (374)
T PLN03032 277 APLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEAGLTCRL-N---ELSSTVVFERP--------MDEA----F-IK 339 (374)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEE-C---CCceEEEEcCC--------CcHh----H-hh
Confidence 4567899999999999999999999999999999987 566543 2 22333333321 1121 2 26
Q ss_pred CCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChh
Q 001989 931 GFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSE 968 (985)
Q Consensus 931 Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~ 968 (985)
||.+.+.. +.+|++++...+++-||+ |++.|+
T Consensus 340 ~w~l~~~~----~~~hi~vm~~~~~~~id~--fi~dl~ 371 (374)
T PLN03032 340 KWQLACEG----DIAHVVVMPNVTVEKLDE--FVEELV 371 (374)
T ss_pred eeeecccC----CEEEEEECCCCCHHHHHH--HHHHHh
Confidence 88876543 689999999999999999 555554
No 36
>PRK02769 histidine decarboxylase; Provisional
Probab=99.94 E-value=9.6e-25 Score=249.17 Aligned_cols=297 Identities=16% Similarity=0.168 Sum_probs=213.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCccc---eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEE
Q 001989 629 GYQEMFNNLGEWLCTITGFDSFS---LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~~---~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv 705 (985)
.+.++++++.+++++++|++... ++.++|++++..++.+.|.+ .++++|++++.+|.++.+.++..|++.+
T Consensus 62 ~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~------~~~~~ii~s~~~H~Sv~ka~~~lg~~~~ 135 (380)
T PRK02769 62 NSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLAREL------FPDGTLYYSKDTHYSVSKIARLLRIKSR 135 (380)
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHh------CCCcEEEeCCCceehHHHHHHHcCCCCc
Confidence 57788999999999999997532 45556677665444444432 2467899999999999999999999999
Q ss_pred EEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcC---CEEEEEccccccccCCCC---
Q 001989 706 SVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNG---GQVYMDGANMNAQVGLTS--- 778 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~g---alliVD~a~~~~~~~l~~--- 778 (985)
.|+++++|.+|+++|+++|++...+|.+|++++++ .+|.++ |+++|+++|+++| +++|||+|+..+...+..
T Consensus 136 ~V~~~~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~id-pi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~ 214 (380)
T PRK02769 136 VITSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAID-NIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPP 214 (380)
T ss_pred eeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccC-CHHHHHHHHHHhCCCceEEEEEecccceeecccCccc
Confidence 99998899999999999998322348999999986 599999 8999999999998 699999998643332210
Q ss_pred --CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHH
Q 001989 779 --PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 779 --pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a 856 (985)
....++|.+++|+||+++.|+ |+|+++++++....+.... ++.. ..+. .+.+++- ...++..
T Consensus 215 ~~d~~~~vDsis~s~HK~~~~P~-----g~G~l~~r~~~~~~~~~~~-----~yl~-~~d~---t~~GSR~--g~~~l~l 278 (380)
T PRK02769 215 PFSFADGIDSIAISGHKFIGSPM-----PCGIVLAKKKYVERISVDV-----DYIG-SRDQ---TISGSRN--GHTALLL 278 (380)
T ss_pred cCCccCCCCEEEECCcccCCCCC-----CcEEEEEehhhhhhcccCc-----cccC-CCCC---CccCCCC--cHHHHHH
Confidence 112389999999999985442 6789999976554432110 0000 0000 1111221 1234567
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccC
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP 935 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~ 935 (985)
|+.|..+|.+|++++.+++.++++|+.++|++ ++++.. . +..+.+++..+ + .++. +||++.
T Consensus 279 w~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~g~~~~~-~---p~~~~v~f~~~--------~-~~~~-----~~w~l~ 340 (380)
T PRK02769 279 WAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQANGIPAWR-N---PNSITVVFPCP--------S-ERIW-----KKWHLA 340 (380)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEc-C---CCceEEEEcCC--------C-HHHH-----hCeeEc
Confidence 99999999999999999999999999999987 565543 2 33433444322 2 2332 688876
Q ss_pred CCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 936 TMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 936 ~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
... +.+||+++..+|+|.||. |++.|.+.+.
T Consensus 341 ~~~----~~~hi~~~~~~~~~~~~~--f~~dl~~~~~ 371 (380)
T PRK02769 341 TSG----NQAHIITMPHHNKQQIDS--LIDELIFDLK 371 (380)
T ss_pred ccC----CEEEEEECCCCCHHHHHH--HHHHHHHHHh
Confidence 553 689999999999999999 6666666554
No 37
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=99.94 E-value=7.9e-25 Score=254.60 Aligned_cols=304 Identities=13% Similarity=0.081 Sum_probs=218.7
Q ss_pred HHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcC-CCCEEEEcCCCChhHHHHHHHhhcCCCeEE----E
Q 001989 210 LESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKG-KKKTFIIASNCHPQTIDICITRADGFDIKV----V 284 (985)
Q Consensus 210 l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~-~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v----~ 284 (985)
.....+.++ + +|+|+++.++.+++|+|.++..++.++ +..+ ++++|+++..+||++..+|+..++..|+++ +
T Consensus 70 ~~~~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~~~~~~~-~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~ 146 (406)
T TIGR01814 70 FTLDESLLK-L-RLVGAKEDEVVVMNTLTINLHLLLASF-YKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMV 146 (406)
T ss_pred hhhhhhhcc-c-cccCCCCCcEEEeCCchHHHHHHHHHh-cCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceE
Confidence 333444444 4 899999989999999998777766554 2211 234789999999999998876566678776 3
Q ss_pred EeCc--------hhhhc-c---CCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccce
Q 001989 285 VSDL--------KDIDY-K---SGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGAD 350 (985)
Q Consensus 285 ~v~~--------~~l~~-l---~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaD 350 (985)
.++. +++++ + +++|++|+++++ |.+|.+.|+++|+++||++|++++||+ .+++|.+. +..++|+|
T Consensus 147 ~~~~~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~-aq~~G~~~id~~~~gvD 225 (406)
T TIGR01814 147 QIEPREEETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDL-AHAVGNVPLDLHDWGVD 225 (406)
T ss_pred EeccCCCCccCHHHHHHHHHhcCCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEc-ccccCCcccccccCCCC
Confidence 4432 34544 3 578999999987 578999999999999999999999953 45667543 45689999
Q ss_pred EEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHH
Q 001989 351 IVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLAN 429 (985)
Q Consensus 351 i~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~ 429 (985)
++++++ |+| +|||| |+++++++....+.+++.||.-..... .|........+..|++.||+|+ .+.+++
T Consensus 226 ~~~~s~hK~l-----~g~pG-~~l~v~~~~~~~~~p~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~GT~~~---~~~~~l 295 (406)
T TIGR01814 226 FACWCTYKYL-----NAGPG-AGAFVHEKHAHTERPRLAGWWGHARPT-RFKMDNTLGLIPCGFRISNPPI---LSVAAL 295 (406)
T ss_pred EEEEcCcccc-----CCCCC-eEEEEehhhhhhcCCCCCcccCCCCcc-ccccccccCCCccceeeCCccH---HHHHHH
Confidence 999999 556 35677 667776655545666677762211110 0111110112334677899998 566677
Q ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC-C---CeEEcCCC----CcceEEEecC-CHHHHHHHHHHcCceee
Q 001989 430 MAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL-G---TVEVQGLP----FFDTVKVKCA-DAHAIASAAYKIEMNLR 500 (985)
Q Consensus 430 ~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~-g---~~~~~~~~----~~~~~~~~~~-~~~~v~~~L~~~GI~~~ 500 (985)
.+++ .++...|++++.+++.++++|+++.|+++ | +++++++. ....++|..+ .+.++.+.|.++||.+.
T Consensus 296 ~~al--~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~~~~~~~~~~L~~~gi~v~ 373 (406)
T TIGR01814 296 RGSL--DIFDQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHPVPGKAVFQALIKRGVIGD 373 (406)
T ss_pred HHHH--HHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEecCCHHHHHHHHHHCCEEEe
Confidence 7776 56667789999999999999999999875 2 38877531 2235677776 48899999999999876
Q ss_pred eecCCeEEEEe-ccCCCHHHHHHHHHHHhC
Q 001989 501 VVDSNTVTASF-DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 501 ~~~~~~lris~-t~~~t~edId~li~aL~~ 529 (985)
...++.+|+|+ +.+||++|||+++++|+.
T Consensus 374 ~~~~~~iRiS~~~~~nt~~did~l~~~l~~ 403 (406)
T TIGR01814 374 KREPSVIRVAPVPLYNTFVDVYDAVNVLEE 403 (406)
T ss_pred ccCCCeEEEechhccCCHHHHHHHHHHHHH
Confidence 54457899999 689999999999999974
No 38
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=99.93 E-value=5.5e-24 Score=246.98 Aligned_cols=298 Identities=19% Similarity=0.189 Sum_probs=222.4
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001989 206 AQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 206 sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~ 285 (985)
+++..+.+.++++.+++++|.+..++.+..|+|.++..+..++....++||+||+++..|+++...|...++..|++++.
T Consensus 55 ~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~ 134 (397)
T TIGR01976 55 SRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKW 134 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEE
Confidence 56777889999999999999987788888888876655444432112388999999999999998887666778999888
Q ss_pred eCc---------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEE
Q 001989 286 SDL---------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVV 353 (985)
Q Consensus 286 v~~---------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v 353 (985)
++. +++++ ++++|++|++.+| |++|.+.|+++|+++||++|++++||. .++.|.. .+..++|+|+++
T Consensus 135 ~~~~~~~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~-a~~~~~~~~~~~~~~~d~~~ 213 (397)
T TIGR01976 135 ARVDEATGELHPDDLASLLSPRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDA-VHYAPHGLIDVQATGADFLT 213 (397)
T ss_pred EeccccCCCcCHHHHHHhcCCCceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEeh-hhhccccCCCHHHcCCCEEE
Confidence 754 34555 7788999999998 789999999999999999999999953 3344422 234678999999
Q ss_pred ecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH
Q 001989 354 GSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 354 ~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~ 433 (985)
++++|+. ||.+|++++++++++.+.+....+ .. .....|++.||.|+ ..+.++.+++
T Consensus 214 ~s~~K~~------g~~~G~l~~~~~~~~~l~~~~~~~----------~~----~~~~~~~~~gt~~~---~~~~~l~~al 270 (397)
T TIGR01976 214 CSAYKFF------GPHMGILWGRPELLMNLPPYKLTF----------SY----DTGPERFELGTPQY---ELLAGVVAAV 270 (397)
T ss_pred Eechhhc------CCceEEEEEcHHHHhhCCCccccC----------cc----CCCcchhcCCCCCH---HHHHHHHHHH
Confidence 9984442 245899999999888875533221 11 11223567888887 4455566665
Q ss_pred -HHHHhCc-----------chHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC----CCcceEEEecCC--HHHHHHHHHHc
Q 001989 434 -YAVYHGP-----------EGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL----PFFDTVKVKCAD--AHAIASAAYKI 495 (985)
Q Consensus 434 -~l~~~g~-----------~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~----~~~~~~~~~~~~--~~~v~~~L~~~ 495 (985)
++...|. ++++++.+++.+++++++++|+++++++++.+ ...+.+.+..++ +.++.++|.++
T Consensus 271 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 350 (397)
T TIGR01976 271 DYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVHGLPPQRVVRRLADQ 350 (397)
T ss_pred HHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeCCcCHHHHHHHHHHC
Confidence 3333442 14788899999999999999999866888743 234556666654 78899999999
Q ss_pred Cceeeee---------------cCCeEEEEeccCCCHHHHHHHHHHH
Q 001989 496 EMNLRVV---------------DSNTVTASFDETTTLEDVDKLFIVF 527 (985)
Q Consensus 496 GI~~~~~---------------~~~~lris~t~~~t~edId~li~aL 527 (985)
||.++.. ..+.+|+|++.+||++|||+|+++|
T Consensus 351 gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 351 GIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL 397 (397)
T ss_pred CeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence 9988642 1357999999999999999999875
No 39
>PLN02651 cysteine desulfurase
Probab=99.93 E-value=3.6e-24 Score=245.55 Aligned_cols=283 Identities=17% Similarity=0.136 Sum_probs=216.4
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHh-hhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001989 207 QGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCN-NIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~-~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~ 285 (985)
....+.+.++++.+++++|.++.++.+++|+|.++..++.+. ....++|++|+++..+|+++...|..+. ..|++++.
T Consensus 39 ~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~-~~g~~v~~ 117 (364)
T PLN02651 39 WESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQ-QEGFEVTY 117 (364)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhccCCCCEEEEcccccHHHHHHHHHHH-hcCCEEEE
Confidence 445677889999999999999888999999987765554332 2112478999999999999999887654 57888888
Q ss_pred eCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEEe
Q 001989 286 SDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVG 354 (985)
Q Consensus 286 v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~ 354 (985)
++. +++++ ++++|++|+++++ |.+|.+.|+++|+++||++|++++||+ .++.|.+ .+..+||+|++++
T Consensus 118 v~~~~~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~-a~~~g~~~~~~~~~~~D~~~~ 196 (364)
T PLN02651 118 LPVKSDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDA-AQAVGKIPVDVDDLGVDLMSI 196 (364)
T ss_pred EccCCCCcCCHHHHHHhcCCCcEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEc-chhhCCcccCcccCCCCEEEe
Confidence 754 34566 7889999999886 789999999999999999999999953 4466643 3567899999999
Q ss_pred cCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH
Q 001989 355 SAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY 434 (985)
Q Consensus 355 s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~ 434 (985)
+++||++| +|+|++++++++..++.+.+.|+.. ..+++.||+|+ .++.++.+++
T Consensus 197 s~hK~~gp-----~G~g~l~v~~~~~~~l~p~~~g~~~-----------------~~~~~~GT~~~---~~~~~l~~al- 250 (364)
T PLN02651 197 SGHKIYGP-----KGVGALYVRRRPRVRLEPLMSGGGQ-----------------ERGRRSGTENT---PLVVGLGAAC- 250 (364)
T ss_pred chhhhCCC-----CceEEEEEcCCCCCCCCccccCCCc-----------------cCCccCCCccH---HHHHHHHHHH-
Confidence 99657544 4689999999988888776665210 11346799998 5677888887
Q ss_pred HHHhCcchHHHHHHHHHHHHHHHHHHHhc-CCCeEEcCC--CC---cceEEEecCC--HHHHHHHHHHcCceeee-----
Q 001989 435 AVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQGL--PF---FDTVKVKCAD--AHAIASAAYKIEMNLRV----- 501 (985)
Q Consensus 435 l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~~~--~~---~~~~~~~~~~--~~~v~~~L~~~GI~~~~----- 501 (985)
.++.. +.+++.+++.+++++++++|++ +.+++++.+ +. ...++|..++ +.++.++|.+ |.++.
T Consensus 251 -~~~~~-~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~--i~v~~g~~c~ 326 (364)
T PLN02651 251 -ELAMK-EMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYVEGESLLMGLKE--VAVSSGSACT 326 (364)
T ss_pred -HHHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCCCCHHHHHHHhCC--EEEEchhhcC
Confidence 33333 4589999999999999999986 534998853 21 2367777776 8899999965 65521
Q ss_pred ------------e------cCCeEEEEeccCCCHHHHH
Q 001989 502 ------------V------DSNTVTASFDETTTLEDVD 521 (985)
Q Consensus 502 ------------~------~~~~lris~t~~~t~edId 521 (985)
+ ..+.+|+|++.+||++|||
T Consensus 327 ~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 327 SASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred CCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 0 1368999999999999986
No 40
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=99.93 E-value=6.9e-24 Score=243.98 Aligned_cols=356 Identities=17% Similarity=0.221 Sum_probs=233.6
Q ss_pred CHHHHHHHHHHHhccccCcccccccccccccCCCccccccccc-cccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCC
Q 001989 569 TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVT-WPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGF 647 (985)
Q Consensus 569 se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~-~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~ 647 (985)
||+|++..+.++.+.......+...+..|+++.+...+..... .....+ + ....|..++.+++++++++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~la~~~g~ 74 (373)
T TIGR03812 1 SEEEVLEELKEYRSEDLKYSDGRILGSMCTNPHPIAVKAYDMFIETNLGD--P----GLFPGTKKIEEEVVGSLGNLLHL 74 (373)
T ss_pred CHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCchHHHHHHHHHHhhcCCCC--c----ccCccHHHHHHHHHHHHHHHhCC
Confidence 6899999999998887765333332334544443322211111 111111 1 11245667788999999999999
Q ss_pred Cccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCCCCHHHHHHHHHh
Q 001989 648 DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEA 726 (985)
Q Consensus 648 ~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~ 726 (985)
+... +..++|++++..++.+++... ..+ .++++|++++..|.++...++..|++++.+++++++.+|+++|+++++
T Consensus 75 ~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~-~~g~~vl~~~~~h~~~~~~~~~~G~~~~~v~~~~~~~~d~~~l~~~l~- 151 (373)
T TIGR03812 75 PDAYGYIVSGGTEANIQAVRAAKNLA-REE-KRTPNIIVPESAHFSFEKAAEMLGLELRYAPLDEDYTVDVKDVEDLID- 151 (373)
T ss_pred CCCCeEEeccHHHHHHHHHHHHHHHH-hcc-CCCcEEEECCcchHHHHHHHHHcCCeEEEEeeCCCCCcCHHHHHHHHh-
Confidence 7643 455666665544444433211 111 255789999988888777788899999999998889999999999997
Q ss_pred cCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-----C----CCCccCCcEEEeCCccccc
Q 001989 727 NRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-----T----SPGYIGADVCHLNLHKTFC 796 (985)
Q Consensus 727 ~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-----~----~pg~~g~Di~~~s~hK~l~ 796 (985)
+++.++++..| |++|.+. |+++|+++||++|+++|||++|......+ . +....++|++++++|||+.
T Consensus 152 --~~~~~vv~~~~~~~tG~~~-~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~ 228 (373)
T TIGR03812 152 --DNTIGIVGIAGTTELGQID-DIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGL 228 (373)
T ss_pred --hCcEEEEEECCCCCCCccC-CHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCC
Confidence 56654444445 5699998 89999999999999999999985322111 0 1112478999999999753
Q ss_pred ccCCCCCCceEEEEEcccccCcCCC---CccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHH
Q 001989 797 IPHGGGGPGMGPIGVKKHLAPFLPS---HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASK 873 (985)
Q Consensus 797 ~p~g~GGPg~G~i~~~~~l~~~lp~---~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~ 873 (985)
.| .|.+|+++.++++.+.+.. ...+. +. ....++ + +...++++++.+..++.+|+.+..+
T Consensus 229 ~~----~~~G~~~~~~~~~~~~l~~~~~~~~~~--------~~--~~~~gt-~--~~~~~~~~~~~l~~l~~~g~~~~~~ 291 (373)
T TIGR03812 229 SP----IPAGGILFRSKSYLKYLSVDAPYLTVK--------KQ--ATITGT-R--SGASAAATYAVIKYLGREGYRKIVA 291 (373)
T ss_pred Cc----CCceEEEEeCHHHHhhhcccCcccCCC--------CC--cceEee-c--hhHHHHHHHHHHHHhCHHHHHHHHH
Confidence 22 2233566566665544321 11000 00 000011 1 1223455678888899999999999
Q ss_pred HHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCC
Q 001989 874 IAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTES 952 (985)
Q Consensus 874 ~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~ 952 (985)
+..+++++++++|++ ++...+. +..+.+.+.++ +..++.++|.++||.+..... ++.+|++++.+
T Consensus 292 ~~~~~~~~l~~~L~~~g~~~~~~----~~~~~v~~~~~--------~~~~v~~~L~~~gi~v~~~~~--~~~iRis~~~~ 357 (373)
T TIGR03812 292 ECMENTRYLVEELKKIGFEPVIE----PVLNIVAFEVD--------DPEEVRKKLRDRGWYVSVTRC--PKALRIVVMPH 357 (373)
T ss_pred HHHHHHHHHHHHHHhCCCeEEcC----CCceEEEEEeC--------CHHHHHHHHHHCCceeccCCC--CCEEEEEEECC
Confidence 999999999999987 4443332 22333444443 356899999999999865432 37899999999
Q ss_pred CCHHHHHHHHccCChhH
Q 001989 953 ESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 953 ~t~eeId~~~~~~~l~~ 969 (985)
+|++|+|+ +++.|++
T Consensus 358 ~t~edid~--l~~~L~~ 372 (373)
T TIGR03812 358 VTREHIEE--FLEDLKE 372 (373)
T ss_pred CCHHHHHH--HHHHHhh
Confidence 99999999 6666654
No 41
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.93 E-value=1.2e-23 Score=242.58 Aligned_cols=292 Identities=17% Similarity=0.179 Sum_probs=219.1
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001989 206 AQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 206 sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~ 285 (985)
+....+.+.++++.+++++|.++.++.+++|+|.++..++.+......++++|+++..+||++...++.+. ..|++++.
T Consensus 37 ~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~-~~G~~v~~ 115 (379)
T TIGR03402 37 GGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQHLE-KQGYKVTY 115 (379)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhcCCCCeEEEcccccHHHHHHHHHHH-HcCCEEEE
Confidence 44567788999999999999998889999999988776665432111256899999999999999887654 47999888
Q ss_pred eCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEe
Q 001989 286 SDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVG 354 (985)
Q Consensus 286 v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~ 354 (985)
++. +++++ +++++++|+++++ |.+|.+.|+++|+++||++|++++||+ .++.|... +..++|+|++++
T Consensus 116 v~~~~~g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~-~~~~g~~~~~~~~~~~D~~~~ 194 (379)
T TIGR03402 116 LPVDEEGRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDA-VQAVGKIPIDLKEMNIDMLSL 194 (379)
T ss_pred EccCCCCcCCHHHHHHhcCCCcEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEEC-cccccccccCcccCCCCEEEE
Confidence 754 34666 7889999999886 789999999999999999999999953 44556442 446799999999
Q ss_pred cCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH
Q 001989 355 SAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY 434 (985)
Q Consensus 355 s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~ 434 (985)
+++|+++| +|+|+++++++. .+.+.+.|.. +..+++.||.|+ .+++++.+++
T Consensus 195 s~~K~~gp-----~G~g~l~v~~~~--~~~p~~~g~~-----------------~~~~~~~gt~~~---~~~~~l~~al- 246 (379)
T TIGR03402 195 SGHKLHGP-----KGVGALYIRKGT--RFRPLLRGGH-----------------QERGRRAGTENV---PGIVGLGKAA- 246 (379)
T ss_pred cHHHcCCC-----CceEEEEECCCC--CCCCcccCCc-----------------cCCCcCCCCccH---HHHHHHHHHH-
Confidence 99547544 468999998764 2333333310 011234688887 5666777776
Q ss_pred HHHhCcchHHHHHHHHHHHHHHHHHHHhc-CCCeEEcCCC--Cc-ceEEEecCC--HHHHHHHHHHcCceeeee------
Q 001989 435 AVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQGLP--FF-DTVKVKCAD--AHAIASAAYKIEMNLRVV------ 502 (985)
Q Consensus 435 l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~~~~--~~-~~~~~~~~~--~~~v~~~L~~~GI~~~~~------ 502 (985)
.++ .++++++.++..++.++++++|++ +.++++..++ .. ..+.|.+++ +.++.+.|.++||.++.-
T Consensus 247 -~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~ 324 (379)
T TIGR03402 247 -ELA-TEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYIEGEAILLLLDMEGICASSGSACTSG 324 (379)
T ss_pred -HHH-HHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCCCHHHHHHhhccCCEEEEchhhcCCC
Confidence 232 346788889999999999999986 6448877432 21 345555554 889999999899987521
Q ss_pred -----------------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 -----------------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -----------------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+.+|+|++.+||++|||+++++|+.
T Consensus 325 ~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~ 368 (379)
T TIGR03402 325 SLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPP 368 (379)
T ss_pred CCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 136899999999999999999999984
No 42
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=99.93 E-value=1.9e-23 Score=240.36 Aligned_cols=307 Identities=18% Similarity=0.149 Sum_probs=229.2
Q ss_pred HhhhHHHHHHHHHHHHHHhcCCC-CcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001989 205 IAQGRLESLLNFQTMIADLTGLP-MSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 205 ~sqg~l~~i~e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v 283 (985)
.++...+.+.++++.+++++|.+ +.++.+++|+|.++..++.++.....+|++|+++...|++....+..+++..|+++
T Consensus 37 ~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~ 116 (373)
T cd06453 37 LSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKL 116 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEE
Confidence 34566788889999999999998 67888899999776666655432111689999999999998887776666678888
Q ss_pred EEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEE
Q 001989 284 VVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIV 352 (985)
Q Consensus 284 ~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~ 352 (985)
+.++. +++++ +++++++|++++| |++|.+.|+++|.++||++|+++++|+ ..+.|.+. +..++|+|++
T Consensus 117 ~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~-a~~~~~~~~~~~~~~~d~~ 195 (373)
T cd06453 117 KVVPVDDDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDG-AQSAGHMPVDVQDLGCDFL 195 (373)
T ss_pred EEeecCCCCCcCHHHHHHHhcCCceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEh-hhhcCceeeeccccCCCEE
Confidence 88754 35666 7788999999987 789999999999999999999999953 34455442 3457899999
Q ss_pred EecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeee-cCCCCcceeeecccccccccccccCCCccchhHHHHHH
Q 001989 353 VGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSI-DSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANM 430 (985)
Q Consensus 353 v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~-d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~ 430 (985)
++++ |+++ +|++|++++++++++.+.+...|+.. +......+. ......+++.+|+|++ .+.++.
T Consensus 196 ~~s~~K~~~------~~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~t~~~~---~~~al~ 262 (373)
T cd06453 196 AFSGHKMLG------PTGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEETT----YADLPHKFEAGTPNIA---GAIGLG 262 (373)
T ss_pred EeccccccC------CCCcEEEEEchHHhhcCCCeecCCCccccccccccc----cCCCccccCCCCCCHH---HHHHHH
Confidence 9998 5553 25689999999999888766555321 100000011 1223445566788874 455555
Q ss_pred HHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC--CCcceEEEecCC--HHHHHHHHHHcCceeeee----
Q 001989 431 AAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL--PFFDTVKVKCAD--AHAIASAAYKIEMNLRVV---- 502 (985)
Q Consensus 431 aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~---- 502 (985)
+++ .++..+|++++.++..++++++++.|+++++++++.+ ...+.+.|..++ +.++.++|.++||.++..
T Consensus 263 ~al--~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~gi~i~~g~~~~ 340 (373)
T cd06453 263 AAI--DYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEGIHPHDVATILDQYGIAVRAGHHCA 340 (373)
T ss_pred HHH--HHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEECCcCHHHHHHHHHHCCEEeccCccch
Confidence 555 6677789999999999999999999999955888742 223456666664 789999999999987421
Q ss_pred --------cCCeEEEEeccCCCHHHHHHHHHHH
Q 001989 503 --------DSNTVTASFDETTTLEDVDKLFIVF 527 (985)
Q Consensus 503 --------~~~~lris~t~~~t~edId~li~aL 527 (985)
.++.+|+|++.++|++|+|+|+++|
T Consensus 341 ~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 341 QPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred hHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence 1468999999999999999999875
No 43
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=99.93 E-value=9.8e-24 Score=245.53 Aligned_cols=314 Identities=16% Similarity=0.143 Sum_probs=214.9
Q ss_pred hhhHHHHHHHHHHHHHHHhCC-Cccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH----HHHHHC
Q 001989 627 AQGYQEMFNNLGEWLCTITGF-DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP----ATAAMC 700 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~-~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~----~~a~~~ 700 (985)
..-..+.++++++.+++++|. +... ++.++++++... +++.+... ...++++||+++..|.+.. ..++..
T Consensus 62 ~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~---~~~~~~~~-~~~~gd~vl~~~~~~~s~~~~~~~~~~~~ 137 (406)
T PRK09295 62 SAQATEKMENVRKQAALFINARSAEELVFVRGTTEGINL---VANSWGNS-NVRAGDNIIISEMEHHANIVPWQMLCARV 137 (406)
T ss_pred HHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHH---HHHHhhhh-cCCCcCEEEECcchhhHHHHHHHHHHHHc
Confidence 344667788999999999997 4434 344445555433 33322100 1146789999998776542 224678
Q ss_pred CcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCC
Q 001989 701 GMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 779 (985)
Q Consensus 701 G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~p 779 (985)
|++++.++.+++|.+|+++|+++++ ++|++|++++| |++|.+. |+++|+++||++|++++||++|..+...+ +.
T Consensus 138 g~~v~~v~~~~~~~~d~~~l~~~i~---~~t~lv~l~~~~n~tG~~~-~~~~i~~~~~~~~~~vivD~a~~~g~~~~-~~ 212 (406)
T PRK09295 138 GAELRVIPLNPDGTLQLETLPALFD---ERTRLLAITHVSNVLGTEN-PLAEMIALAHQHGAKVLVDGAQAVMHHPV-DV 212 (406)
T ss_pred CcEEEEEecCCCCCCCHHHHHHhcC---CCcEEEEEecchhcccccC-CHHHHHHHHHHcCCEEEEEcccccCcccc-Cc
Confidence 9999999998889999999999997 78999999998 5799998 89999999999999999999996554333 34
Q ss_pred CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCC-------CCCC-----CCCCCCCCCCCCcch
Q 001989 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTG-------GIPA-----PEKSQPLGTIAAAPW 847 (985)
Q Consensus 780 g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~-------~~~~-----~~~~~~~~~i~s~~~ 847 (985)
..+++|++++|+||.+ |++|+|++++++++.+.+++...|++. +... ++.+.+|.++.
T Consensus 213 ~~~~~D~~~~s~~K~~------gp~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~---- 282 (406)
T PRK09295 213 QALDCDFYVFSGHKLY------GPTGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTG---- 282 (406)
T ss_pred hhcCCCEEEeehhhcc------CCCCcEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHH----
Confidence 5678999999999965 334789999998877666654333211 0000 11233333322
Q ss_pred hhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH
Q 001989 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL 927 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L 927 (985)
...+..++++.+...|+.++.++..+++++++++|++...+...++.. ....+.+.++ +.+++++.+.|
T Consensus 283 ----~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~-~~~iv~~~~~------~~~~~~~~~~L 351 (406)
T PRK09295 283 ----GIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQN-RLGVIAFNLG------KHHAYDVGSFL 351 (406)
T ss_pred ----HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC-CceEEEEEEC------CcCHHHHHHHH
Confidence 122233445555555666777788888999999997632332222211 1233445544 45678899999
Q ss_pred HHCCCccCC---CCC------CCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 928 MDYGFHGPT---MSW------PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 928 ~~~Gi~~~~---~~~------p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.++||.+.. +.. ..++.+|+|++.++|++|||+ ++++|+++.+
T Consensus 352 ~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~--l~~~l~~i~~ 403 (406)
T PRK09295 352 DNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDR--LVAGLQRIHR 403 (406)
T ss_pred HhCCeEEeccccchHHHHHHHCCCCEEEEEccCCCCHHHHHH--HHHHHHHHHH
Confidence 999998753 211 134789999999999999999 7788877643
No 44
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.93 E-value=1.3e-23 Score=244.03 Aligned_cols=314 Identities=16% Similarity=0.129 Sum_probs=214.0
Q ss_pred hhHHHHHHHHHHHHHHHhCCC-ccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH----HHHHHCC
Q 001989 628 QGYQEMFNNLGEWLCTITGFD-SFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP----ATAAMCG 701 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~-~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~----~~a~~~G 701 (985)
.-..+.++++++.+++++|.+ ... ++.++++++...++. .+.. ....++++||+++..|.++. ..++..|
T Consensus 56 ~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~---~~~~-~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g 131 (398)
T TIGR03392 56 QSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLVAQ---SYAR-PRLQPGDEIIVSEAEHHANLIPWLMVAQQTG 131 (398)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHH---Hhhh-ccCCCCCEEEECCcchhHHHHHHHHHHHHcC
Confidence 335567889999999999985 434 344555665533333 2210 01246789999998887642 2356789
Q ss_pred cEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Q 001989 702 MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 780 (985)
Q Consensus 702 ~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg 780 (985)
++++.+|+++++.+|+++|+++++ ++|++|++++|+ .+|.+. |+++|+++||++|+++++|++|..+...+ +..
T Consensus 132 ~~v~~v~~~~~~~~~~~~l~~~i~---~~t~lv~i~~~~n~tG~~~-~~~~i~~~~~~~~~~~ivD~a~~~~~~~~-~~~ 206 (398)
T TIGR03392 132 AKVVKLPIGADLLPDIRQLPELLT---PRTRILALGQMSNVTGGCP-DLARAITLAHQYGAVVVVDGAQGVVHGPP-DVQ 206 (398)
T ss_pred cEEEEEecCCCCCcCHHHHHHHhc---cCceEEEEECccccccccC-CHHHHHHHHHHcCCEEEEEhhhhcCCCCC-Chh
Confidence 999999998888899999999997 789999999984 799998 89999999999999999999986443322 334
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCC----C---C----CCCCCCCCCCCCCCcchhh
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTG----G---I----PAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~----~---~----~~~~~~~~~~~i~s~~~g~ 849 (985)
.+++|++++|+||++ |.+|+|++++++++.+.++....+... + . ..++.+.+|.++. .
T Consensus 207 ~~~~d~~~~s~~K~~------gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~-----~ 275 (398)
T TIGR03392 207 ALDIDFYAFSGHKLY------GPTGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIA-----G 275 (398)
T ss_pred hcCCCEEEEeccccc------CCCceEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHH-----H
Confidence 578999999999966 334799999998877666543222110 0 0 0011122333322 1
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
..++ .+.++.+...|+.++.++..++++++.+.|++..++...++... ..+.+.++ +.+.+++.++|.+
T Consensus 276 ~~a~---~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~--~i~~~~~~------~~~~~~l~~~L~~ 344 (398)
T TIGR03392 276 VIGL---SAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFRSFRCPGS--SLLAFDFA------GVHHSDLAALLAE 344 (398)
T ss_pred HHHH---HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCC--cEEEEEeC------CcCHHHHHHHHHh
Confidence 1222 33444444556666677788889999999976323322221111 12334443 4677899999999
Q ss_pred CCCccCCCC---C------CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 930 YGFHGPTMS---W------PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 930 ~Gi~~~~~~---~------p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+||.+.... . ...+.+|||++.++|++|||+ +++.|+++++.+
T Consensus 345 ~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~--l~~~l~~~~~~~ 396 (398)
T TIGR03392 345 SGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDA--LVDAVGAALELL 396 (398)
T ss_pred CCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHHHHHH--HHHHHHHHHHHh
Confidence 999875321 1 124799999999999999999 888998887654
No 45
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=99.93 E-value=3.4e-23 Score=238.52 Aligned_cols=302 Identities=15% Similarity=0.161 Sum_probs=223.4
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCc-ceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001989 207 QGRLESLLNFQTMIADLTGLPMS-NASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~~-~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~ 285 (985)
++..+.+.++++.+++++|++.. ++.+++|+|.++..++.+. + ++||+|+++...|+++..++...++..|++++.
T Consensus 40 ~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~-~--~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 116 (376)
T TIGR01977 40 LRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGL-L--KEGDHVITTPMEHNSVARPLECLKEQIGVEITI 116 (376)
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhc-c--CCCCEEEECcchhhHHHHHHHHHHHHcCcEEEE
Confidence 44557888999999999999754 7888899998777666553 2 378999999999999998887777777888888
Q ss_pred eCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEe
Q 001989 286 SDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVG 354 (985)
Q Consensus 286 v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~ 354 (985)
++. +++++ +++++++|++++| |.+|.+.|+++|+++||++|++++|| ..+++|.+. ...++|+|++++
T Consensus 117 v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD-~a~~~g~~~~~~~~~~~D~~~~ 195 (376)
T TIGR01977 117 VKCDNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILD-AAQTAGVIPIDMTELAIDMLAF 195 (376)
T ss_pred EecCCCCCcCHHHHHHhcCCCCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEE-hhhccCccCCCchhcCCCEEEe
Confidence 754 34666 7788999999987 77999999999999999999999994 345666553 345789999999
Q ss_pred cC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH
Q 001989 355 SA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 355 s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~ 433 (985)
++ |++++| +|.|+++++++. .+.+...|+.. .+.+.+.. .+....|.+.+|.|+ ..+.++.+++
T Consensus 196 s~~K~l~~p-----~g~g~l~~~~~~--~~~~~~~~~~~----~~~~~~~~-~~~~~~r~~~~t~~~---~~~~a~~~al 260 (376)
T TIGR01977 196 TGHKGLLGP-----QGTGGLYIREGI--KLKPLKSGGTG----SHSALIDQ-PSELPDRFESGTLNT---PGIAGLNAGI 260 (376)
T ss_pred cccccccCC-----CCceEEEEcCCc--CcCceecCCCc----cccccccc-cccchhhccCCCCCH---HHHHHHHHHH
Confidence 99 666544 356788888765 22222222210 01111111 111122456788776 4555666555
Q ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC--C--CcceEEEecCC--HHHHHHHHHHc-Cceeee-----
Q 001989 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL--P--FFDTVKVKCAD--AHAIASAAYKI-EMNLRV----- 501 (985)
Q Consensus 434 ~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~--~--~~~~~~~~~~~--~~~v~~~L~~~-GI~~~~----- 501 (985)
.++...|++++.+++.++++++++.|.++++++++.+ + ....+.|..++ ..++.+.|.++ ||.++.
T Consensus 261 --~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~ 338 (376)
T TIGR01977 261 --KFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGIDSEEVADILDEKFDIATRTGLHCA 338 (376)
T ss_pred --HHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCCCHHHHHHHHhccCCEEEEcccccc
Confidence 6777789999999999999999999998855888742 1 23456666665 78899999987 887642
Q ss_pred ---------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 ---------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ---------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
...+.+|++++.++|.+|||+++++|+.
T Consensus 339 ~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 339 PLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred hHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 1247899999999999999999999963
No 46
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=99.92 E-value=4.4e-23 Score=237.06 Aligned_cols=347 Identities=15% Similarity=0.181 Sum_probs=238.9
Q ss_pred CCCHHHHHHHHHHHhcCCCccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCC
Q 001989 147 GLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGL 226 (985)
Q Consensus 147 ~~se~e~~~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~ 226 (985)
+.+|.|++++|++++.++..+..|+|..+.+ ..|.++ +.+.+ ++.. .+..+...+++.+.+.++++++++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~a~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~la~~~g~ 74 (371)
T PRK13520 1 GLSEEEILEELEEYRSEDLKYERILSSMCTE-PHPIAR-KAHEM---FLET-NLGDPGLFPGTAKLEEEAVEMLGELLHL 74 (371)
T ss_pred CCCHHHHHHHHHHHHhcCCCHHHeeeeeecC-chHHHH-HHHHH---HHhc-CCCCcccCccHHHHHHHHHHHHHHHhCC
Confidence 3689999999999999998877788887632 334433 23321 1111 1222223357788889999999999999
Q ss_pred CCcceeeccchHHHHHHHHHHhh-hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCC
Q 001989 227 PMSNASLLDEGTAAAEAMAMCNN-IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSG 296 (985)
Q Consensus 227 ~~~~~sl~~~~ta~~ea~~~a~~-~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~ 296 (985)
+..++.+++|+|.+...++.+.+ ...+++++|++++..|+++.+.++ ..|++++.++. ++|++ +++
T Consensus 75 ~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~~~~~----~~g~~~~~v~~~~~~~~d~~~l~~~i~~ 150 (371)
T PRK13520 75 PDAYGYITSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFDKAAD----MLGVELRRAPLDDDYRVDVKAVEDLIDD 150 (371)
T ss_pred CCCCeEEecCcHHHHHHHHHHHHhhccCCCceEEecCcchHHHHHHHH----HcCceEEEecCCCCCcCCHHHHHHHHhh
Confidence 88788888999877766654332 111257899999999999877654 35778877653 45666 777
Q ss_pred CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC---CC-----CCcccceEEEecCccccccCCCCC
Q 001989 297 DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL---KP-----PGELGADIVVGSAQRFGVPMGYGG 367 (985)
Q Consensus 297 ~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l---~~-----~~~~GaDi~v~s~k~lg~P~~~GG 367 (985)
++++|++.++ |.+|.+.|+++|+++||++|++++||. .++.+.+ .. ...+|+|.+.+++++++.+ |+
T Consensus 151 ~~~~vi~~~~~~~tG~~~~l~~I~~l~~~~g~~livD~-a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a---~~ 226 (371)
T PRK13520 151 NTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDA-AFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLA---PI 226 (371)
T ss_pred CCEEEEEEcCCcCCcccCCHHHHHHHHHHcCCCEEEEe-cchhHHHHhhcCCCCccccCCCCceEEECCccccCc---cC
Confidence 8888877665 679999999999999999999999953 3332221 11 1246899999998666431 23
Q ss_pred CcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHH
Q 001989 368 PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIA 447 (985)
Q Consensus 368 P~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~ 447 (985)
|..++++.++++.+.+... .+ |... .. + .-..||.+. ....++.++ +..++.+|++++.
T Consensus 227 ~~G~~~~~~~~~~~~l~~~----------~~-~~~~--~~-~--~~~~gt~~~---~~~~~~~~a--l~~l~~~g~~~~~ 285 (371)
T PRK13520 227 PAGGILFRDESYLDALAVD----------TP-YLTS--KK-Q--ATLTGTRSG---AGVAATYAV--MKYLGREGYRKVV 285 (371)
T ss_pred CceEEEEcCHHHHHhhccc----------Cc-cccC--CC-C--cceEeeccC---hHHHHHHHH--HhhhcHhHHHHHH
Confidence 3444555566676665310 00 1000 00 0 001244433 223333344 3677888999999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCCHHHHHHHHHHcCceeeeec-CCeEEEEeccCCCHHHHHHHHHH
Q 001989 448 QRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNLRVVD-SNTVTASFDETTTLEDVDKLFIV 526 (985)
Q Consensus 448 ~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~GI~~~~~~-~~~lris~t~~~t~edId~li~a 526 (985)
++..+++++++++|+++| ++++..+..+.+.+..+.+.++.++|.++||.++... ++.+|+|++.++|++|||+++++
T Consensus 286 ~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~v~~~~~~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~edi~~~~~~ 364 (371)
T PRK13520 286 ERCMENTRWLAEELKERG-FEPVIEPVLNIVAFDDPNPDEVREKLRERGWRVSVTRCPEALRIVCMPHVTREHIENFLED 364 (371)
T ss_pred HHHHHHHHHHHHHHHhCC-CEEecCCCceEEEEecCCHHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHHHHHHHHH
Confidence 999999999999999987 8844334445566766668899999999999887643 56799999999999999999999
Q ss_pred HhC
Q 001989 527 FAG 529 (985)
Q Consensus 527 L~~ 529 (985)
|+.
T Consensus 365 l~~ 367 (371)
T PRK13520 365 LKE 367 (371)
T ss_pred HHH
Confidence 973
No 47
>PLN02651 cysteine desulfurase
Probab=99.92 E-value=2.5e-23 Score=238.54 Aligned_cols=296 Identities=11% Similarity=0.115 Sum_probs=204.2
Q ss_pred hHHHHHHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH---HHHCCcEE
Q 001989 629 GYQEMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT---AAMCGMKI 704 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~---a~~~G~~v 704 (985)
...+.++++++.+++++|.+... ++.++|++++..++.++.... ..++++||+++..|+++... ++..|+++
T Consensus 40 ~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~----~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v 115 (364)
T PLN02651 40 ESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFY----KDKKKHVITTQTEHKCVLDSCRHLQQEGFEV 115 (364)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhc----cCCCCEEEEcccccHHHHHHHHHHHhcCCEE
Confidence 45677889999999999987644 444556666544444332211 13578999999888776444 23579999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g 783 (985)
+.+|++++|.+|+++++++|+ ++|++|++++++ .+|.+. |+++|+++||++|++++||++|..+...+ ++.+++
T Consensus 116 ~~v~~~~~~~~d~~~l~~~i~---~~t~lv~v~~~~n~tG~~~-~l~~I~~~~~~~g~~~~vD~a~~~g~~~~-~~~~~~ 190 (364)
T PLN02651 116 TYLPVKSDGLVDLDELAAAIR---PDTALVSVMAVNNEIGVIQ-PVEEIGELCREKKVLFHTDAAQAVGKIPV-DVDDLG 190 (364)
T ss_pred EEEccCCCCcCCHHHHHHhcC---CCcEEEEEECCCCCceecc-cHHHHHHHHHHcCCEEEEEcchhhCCccc-CcccCC
Confidence 999998889999999999997 789999999874 699998 89999999999999999999997554443 567889
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM 863 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l 863 (985)
+|++++++|||+ |++|+|+++++++....+.+...|+... .+++.+|.++.. ...+. +.+..+
T Consensus 191 ~D~~~~s~hK~~------gp~G~g~l~v~~~~~~~l~p~~~g~~~~---~~~~~GT~~~~~-----~~~l~---~al~~~ 253 (364)
T PLN02651 191 VDLMSISGHKIY------GPKGVGALYVRRRPRVRLEPLMSGGGQE---RGRRSGTENTPL-----VVGLG---AACELA 253 (364)
T ss_pred CCEEEechhhhC------CCCceEEEEEcCCCCCCCCccccCCCcc---CCccCCCccHHH-----HHHHH---HHHHHH
Confidence 999999999974 3458999999988776665444442110 112334444331 12222 334444
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhc---cCCeeecCC-CCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC---
Q 001989 864 GSKGLTEASKIAILNANYMAKRLEK---HYPILFRGV-NGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT--- 936 (985)
Q Consensus 864 g~eGl~~~~~~~~~~a~~l~~~L~~---g~~l~~~~~-~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~--- 936 (985)
.. +..++.++...+++++.++|++ ++++..+.. .....+.+.+.++ +.+.+++.++|.+ |.++.
T Consensus 254 ~~-~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~L~~--i~v~~g~~ 324 (364)
T PLN02651 254 MK-EMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFA------YVEGESLLMGLKE--VAVSSGSA 324 (364)
T ss_pred HH-hHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeC------CCCHHHHHHHhCC--EEEEchhh
Confidence 33 3466677888899999999874 334432111 1111223445554 5788999999965 66532
Q ss_pred CCCC-----------------CCCEEEEeccCCCCHHHHH
Q 001989 937 MSWP-----------------VPGTLMIEPTESESKSWTG 959 (985)
Q Consensus 937 ~~~p-----------------~~~~lris~t~~~t~eeId 959 (985)
|..+ ..+.+|+|++.+||++|||
T Consensus 325 c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 325 CTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred cCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence 2111 1378999999999999986
No 48
>PLN02263 serine decarboxylase
Probab=99.92 E-value=4.7e-23 Score=236.38 Aligned_cols=299 Identities=16% Similarity=0.189 Sum_probs=214.3
Q ss_pred hHHHHHHHHHHHHHHHhCCCcc---ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEE
Q 001989 629 GYQEMFNNLGEWLCTITGFDSF---SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~---~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv 705 (985)
+..++..++-+|+++++|.+.. .++.++|+++++.++.++|.+. ++..+++|+.+|.++.+++.+.|++++
T Consensus 130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~------~~~vvy~S~~aH~Sv~KAa~llgi~~~ 203 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVF------PDGILYASRESHYSVFKAARMYRMECV 203 (470)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhc------CCcEEEEcCCccHHHHHHHHhcCCcce
Confidence 6889999999999999999652 3556778888877777777531 344688899999999999999999999
Q ss_pred EEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCC-----EEEEEccccccccCCC--
Q 001989 706 SVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGG-----QVYMDGANMNAQVGLT-- 777 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~ga-----lliVD~a~~~~~~~l~-- 777 (985)
.||++++|++|+++|+++|.+...++.+|+++.++ .+|.+| ||++|+++|+++|+ |+|||||..-....+.
T Consensus 204 ~Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiD-pi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~ 282 (470)
T PLN02263 204 KVDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVD-DLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKR 282 (470)
T ss_pred EeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCC-CHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhccc
Confidence 99999999999999999998432235667777776 499999 99999999999997 9999998631111111
Q ss_pred CC---CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHH
Q 001989 778 SP---GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 778 ~p---g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
.+ +...+|.++.++|||++.|++ .|++.+++.....+.... ++... .+ ..+..+.-| ..++
T Consensus 283 ~~~~df~~~vDSIsvD~HK~l~~P~~-----cgvll~R~~~~~~~~~~~-----~Yl~~-~d---~ti~gSR~g--~~al 346 (470)
T PLN02263 283 APKVTFKKPIGSVSVSGHKFVGCPMP-----CGVQITRMEHINVLSSNV-----EYLAS-RD---ATIMGSRNG--HAPI 346 (470)
T ss_pred ccccCCCcCccEEEECCccccCCCcC-----EEEEEEehhhHhhhccCh-----HhhCC-CC---CCcCCCCCc--HHHH
Confidence 11 223489999999999987765 467888865432221100 00000 01 112222222 2246
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCc
Q 001989 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 933 (985)
Q Consensus 855 ~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~ 933 (985)
..|+.|+.+|.+|+++..+++.++++++.++|++ ++.+... +....+++..+ . .+ +..+||.
T Consensus 347 ~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~g~~~~~~----p~s~~V~f~~p--------~-~~----~~~~gW~ 409 (470)
T PLN02263 347 FLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREAGISAMLN----ELSSTVVFERP--------K-DE----EFVRRWQ 409 (470)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEeC----CCceEEEEecC--------c-hH----HhhcceE
Confidence 6899999999999999999999999999999987 5554432 23333444422 1 11 2347998
Q ss_pred cCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 934 GPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 934 ~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
..... +.++++++...+++-||+ |++.|++....
T Consensus 410 L~~~~----~~~Hivvmphv~~~~id~--fi~DL~~~~~~ 443 (470)
T PLN02263 410 LACQG----NIAHVVVMPSVTIEKLDY--FLKELVEKRST 443 (470)
T ss_pred EccCC----CcEEEEEcCCCCHHHHHH--HHHHHHHHHhh
Confidence 76543 579999999899999999 77777776653
No 49
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.92 E-value=4.4e-23 Score=237.96 Aligned_cols=311 Identities=15% Similarity=0.164 Sum_probs=211.0
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH---HHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT---AAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~---a~~~G~~ 703 (985)
....+.++++++++++++|.+... ++.++|++|+..++.++... ..++++||++...|+++... ++..|++
T Consensus 38 ~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~-----~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~ 112 (379)
T TIGR03402 38 GEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAA-----QPEKRHIITTAVEHPAVLSLCQHLEKQGYK 112 (379)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHh-----cCCCCeEEEcccccHHHHHHHHHHHHcCCE
Confidence 345677889999999999987644 44556677665555443211 12457888888888766443 3347999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
++.+|.+++|.+|+++++++++ +++++|+++++ |.+|.+. |+++|+++||++|+++++|++|..+...+ +..++
T Consensus 113 v~~v~~~~~g~~~~~~l~~~i~---~~~~lv~i~~~~n~tG~~~-~~~~I~~l~~~~g~~vivD~~~~~g~~~~-~~~~~ 187 (379)
T TIGR03402 113 VTYLPVDEEGRLDLEELRAAIT---DDTALVSVMWANNETGTIF-PIEEIGEIAKERGALFHTDAVQAVGKIPI-DLKEM 187 (379)
T ss_pred EEEEccCCCCcCCHHHHHHhcC---CCcEEEEEEcccCCeeecc-cHHHHHHHHHHcCCEEEEECccccccccc-CcccC
Confidence 9999998889999999999997 78999999987 5799998 89999999999999999999997544332 34568
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
++|++++|+||++ |.+|+|++++++... +.+...|+... ...+.++.++. +. ..+. +.++.
T Consensus 188 ~~D~~~~s~~K~~------gp~G~g~l~v~~~~~--~~p~~~g~~~~---~~~~~gt~~~~----~~-~~l~---~al~~ 248 (379)
T TIGR03402 188 NIDMLSLSGHKLH------GPKGVGALYIRKGTR--FRPLLRGGHQE---RGRRAGTENVP----GI-VGLG---KAAEL 248 (379)
T ss_pred CCCEEEEcHHHcC------CCCceEEEEECCCCC--CCCcccCCccC---CCcCCCCccHH----HH-HHHH---HHHHH
Confidence 9999999999943 345899999987642 22222222110 11122333322 11 1122 22333
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCC-ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC---C
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT---M 937 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~-~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~---~ 937 (985)
+ .+.+.+..++..+++++++++|++ ...+...++.. .....+.+.++ +.+++++.+.|.++||.+.. +
T Consensus 249 ~-~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gI~v~~g~~c 321 (379)
T TIGR03402 249 A-TEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFE------YIEGEAILLLLDMEGICASSGSAC 321 (379)
T ss_pred H-HHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEec------CCCHHHHHHhhccCCEEEEchhhc
Confidence 2 234566666778888999998874 33332223211 11112334443 45788999999999998753 2
Q ss_pred CCC-----------------CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 938 SWP-----------------VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 938 ~~p-----------------~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
..+ ..+.+|+|++.++|++|||+ +++.|+++++.++.
T Consensus 322 ~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~--~~~~l~~~~~~~~~ 375 (379)
T TIGR03402 322 TSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDY--VLEVLPPIIARLRA 375 (379)
T ss_pred CCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHH--HHHHHHHHHHHHHh
Confidence 111 13789999999999999999 88999999887664
No 50
>PLN02590 probable tyrosine decarboxylase
Probab=99.92 E-value=3e-23 Score=244.07 Aligned_cols=382 Identities=13% Similarity=0.084 Sum_probs=250.2
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCC---ccccccccccccccccCCCCchhhhhhHHHHHHH
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLN---ATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNN 636 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~---~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e 636 (985)
++| +.+.+.+++++.+.+.............|+|+-..... ...++.... .|.+.+.- +.+++..++..+
T Consensus 102 ~~P--~~g~~~~~il~~~~~~i~p~~~~~~hP~f~a~~~~~~~~~~~lgd~l~sa----~n~~~~~~-~~sPa~t~lE~~ 174 (539)
T PLN02590 102 SAP--ERPESLKELLDDVSKKIMPGITHWQSPSYFAYYASSTSVAGFLGEMLNAG----LSVVGFTW-LTSPAATELEII 174 (539)
T ss_pred CCC--CCCCCHHHHHHHHHHHHhccCCcCCCCCeeEeccCCCcHHHHHHHHHHHh----cccccCCc-ccCchhHHHHHH
Confidence 345 46678889999998866655444455677775211111 112222211 12222222 556788899999
Q ss_pred HHHHHHHHhCCCcc--------ceecCcHHHHHHHHHHHHHHHHHh-cCC--CCCCEEEEcCCCCcccHHHHHHCCc---
Q 001989 637 LGEWLCTITGFDSF--------SLQPNAGAAGEYAGLMVIRAYHKA-RGD--HHRNVCIIPVSAHGTNPATAAMCGM--- 702 (985)
Q Consensus 637 ~~~~la~l~G~~~~--------~~~~~sGa~a~~a~l~air~~~~~-~g~--~~~~~IIv~~~~Hg~~~~~a~~~G~--- 702 (985)
+.+|+++++|++.. .++.++|+++++.++.++|..... .|. .++-.|++++.+|.+..+++.+.|+
T Consensus 175 vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~ 254 (539)
T PLN02590 175 VLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACLIGGIHEE 254 (539)
T ss_pred HHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHHHcCCCcc
Confidence 99999999999852 355677888888888888764321 121 1233566688899999999999998
Q ss_pred EEEEEcCCC--CCCCCHHHHHHHHHhc---CCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCC
Q 001989 703 KIVSVGTDA--KGNINIEELRKAAEAN---RDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL 776 (985)
Q Consensus 703 ~vv~v~~d~--~g~iD~e~L~~~i~~~---~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l 776 (985)
+++.||+|. ++++|+++|+++|++. .....+|+.+..+ .+|.+| ||++|+++|+++|+|+|||+|+.-. ..+
T Consensus 255 ~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiD-pl~~Ia~i~~~~g~WlHVDaA~GG~-al~ 332 (539)
T PLN02590 255 NIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVD-PLVPLGNIAKKYGIWLHVDAAYAGN-ACI 332 (539)
T ss_pred cEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccC-CHHHHHHHHHHhCCeEEEecchhhh-hhc
Confidence 688999984 5799999999999731 1124567777776 499999 9999999999999999999987311 111
Q ss_pred CCC-------CccCCcEEEeCCcccccccCCCCCCceEEEEEccc--cc-------CcCCCCccccCCCCCCCCCCCCCC
Q 001989 777 TSP-------GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--LA-------PFLPSHPVVSTGGIPAPEKSQPLG 840 (985)
Q Consensus 777 ~~p-------g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~--l~-------~~lp~~~~g~~~~~~~~~~~~~~~ 840 (985)
.| +-..+|.++.++|||+..|+++ |++.+++. +. +++.... ....+.... +.+.
T Consensus 333 -~~~~r~~~~Gie~ADSit~D~HK~l~~p~~c-----g~llvr~~~~l~~a~~~~~~YL~~~~-~~~~~~~d~-~d~~-- 402 (539)
T PLN02590 333 -CPEYRKFIDGIENADSFNMNAHKWLFANQTC-----SPLWVKDRYSLIDALKTNPEYLEFKV-SKKDTVVNY-KDWQ-- 402 (539)
T ss_pred -ChhhHHHhcCCccCCEEEECchhhcCcCcCE-----EEEEecCHHHHHHHhhcCHHHhCCcc-cccccCCCc-cccC--
Confidence 22 2345899999999999888654 57888853 21 1221100 000000000 0011
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCC
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGI 918 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~ 918 (985)
.-++ -...++..|+.|+.+|.+|++++.++.+++++|+.+.|++ .++++.+ +.+..+++++.+ .+.
T Consensus 403 i~ls----Rr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~----~~l~iVcFr~~~----~~~ 470 (539)
T PLN02590 403 ISLS----RRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTT----RYFSLVCFRLAP----VDG 470 (539)
T ss_pred CCCC----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC----CceEEEEEEecC----CCC
Confidence 1112 2234567899999999999999999999999999999986 4666532 345566666542 011
Q ss_pred C-------HHHHHHHHHHCCCc-cCCCCCCCCCEEEEecc-CCCCHHHHHHHHccCChhHHHHhh
Q 001989 919 E-------PEDVAKRLMDYGFH-GPTMSWPVPGTLMIEPT-ESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 919 ~-------~~~v~~~L~~~Gi~-~~~~~~p~~~~lris~t-~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+ ..++.++|.+.|.. +....+.-...||+++. ..++++|||. +++.|.+...++
T Consensus 471 ~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~--~~~~i~~~a~~~ 533 (539)
T PLN02590 471 DEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTE--AWQIIQKHASKF 533 (539)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHH--HHHHHHHHHHHh
Confidence 1 24677777777765 33222221247899985 6788999999 777777765554
No 51
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=99.92 E-value=5.6e-23 Score=238.86 Aligned_cols=314 Identities=16% Similarity=0.148 Sum_probs=215.3
Q ss_pred hhHHHHHHHHHHHHHHHhCC-Cccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH----HHHHHCC
Q 001989 628 QGYQEMFNNLGEWLCTITGF-DSFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP----ATAAMCG 701 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~-~~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~----~~a~~~G 701 (985)
....+.++++++.+++++|. +...+ +.+++++++..+ ++.+.. ....++++||+++..|.++. ..++..|
T Consensus 59 ~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~---~~~~~~-~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g 134 (401)
T PRK10874 59 QRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLV---AQSYAR-PRLQPGDEIIVSEAEHHANLVPWLMVAQQTG 134 (401)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHH---HHHhhh-ccCCCcCEEEECCcchHHHHHHHHHHHHHhC
Confidence 45667788999999999999 44443 445556655333 333211 01146789999998876642 2346789
Q ss_pred cEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Q 001989 702 MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 780 (985)
Q Consensus 702 ~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg 780 (985)
++++.+|.+.++.+|+++++++++ ++|++|++++|+ .+|.+. |+++|+++||++|++++||++|..+...+ +..
T Consensus 135 ~~v~~v~~~~~~~~d~~~l~~~i~---~~t~lv~i~~~~n~tG~~~-~~~~i~~l~~~~g~~~ivD~a~~~g~~~~-~~~ 209 (401)
T PRK10874 135 AKVVKLPLGADRLPDVDLLPELIT---PRTRILALGQMSNVTGGCP-DLARAITLAHQAGMVVMVDGAQGAVHFPA-DVQ 209 (401)
T ss_pred CEEEEEecCCCCcCCHHHHHHhcC---cCcEEEEEeCCcccccCcC-CHHHHHHHHHHcCCEEEEECCcccccccC-Cch
Confidence 999999998888999999999997 899999999985 699998 89999999999999999999996444332 335
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCC----C---C----CCCCCCCCCCCCCCcchhh
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTG----G---I----PAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~----~---~----~~~~~~~~~~~i~s~~~g~ 849 (985)
.+++|++++|+||++ |.+|+|++++++++.+.++....+.+. + . ..++.+.++.++. .
T Consensus 210 ~~~~d~~~~s~~K~~------gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~-----~ 278 (401)
T PRK10874 210 ALDIDFYAFSGHKLY------GPTGIGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVA-----G 278 (401)
T ss_pred hcCCCEEEEeccccc------CCCccEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHH-----H
Confidence 678999999999965 335789999998877666543222110 0 0 0011122222221 1
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
..++. +.+..+...|+.+..++..++++++.++|++..++...++... ..+.+.++ +.+.+++.+.|.+
T Consensus 279 ~~al~---~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~--~i~~~~~~------~~~~~~~~~~L~~ 347 (401)
T PRK10874 279 VIGLS---AALEWLADIDINQAESWSRSLATLAEDALAKLPGFRSFRCQDS--SLLAFDFA------GVHHSDLVTLLAE 347 (401)
T ss_pred HHHHH---HHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCC--cEEEEEEC------CcCHHHHHHHHHH
Confidence 12222 3344444556666667778889999999976333322121111 12344554 4567899999999
Q ss_pred CCCccCCCCC---------CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 930 YGFHGPTMSW---------PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 930 ~Gi~~~~~~~---------p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+||.+..... ...+.+|||++.++|++|||+ ++++|+++++.+
T Consensus 348 ~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~--ll~al~~~~~~~ 399 (401)
T PRK10874 348 YGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDA--LVNAVDRALELL 399 (401)
T ss_pred CCcEEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHH--HHHHHHHHHHHh
Confidence 9998754221 124799999999999999999 888998887754
No 52
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=99.92 E-value=5e-23 Score=240.92 Aligned_cols=316 Identities=14% Similarity=0.107 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHHHHHhCCCc-cc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcE
Q 001989 630 YQEMFNNLGEWLCTITGFDS-FS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMK 703 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~-~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~ 703 (985)
..+.++++++.+++++|.+. .. ++.++++++.. ++++.+... ...++++||+++..|+++.. .++..|++
T Consensus 74 ~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~---~i~~~~~~~-~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~ 149 (424)
T PLN02855 74 ATDAYELARKKVAAFINASTSREIVFTRNATEAIN---LVAYTWGLA-NLKPGDEVILSVAEHHSNIVPWQLVAQKTGAV 149 (424)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHH---HHHHHhhhh-cCCCcCEEEECCCccHHHHHHHHHHHHHcCCE
Confidence 34567789999999999853 34 44445555543 223321000 12467899999888875432 24678999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
++.+++++++.+|+++++++++ ++|++|++++++ .+|.+. |+++|+++||++|+++++|++|..+...+ +..++
T Consensus 150 v~~v~~~~~~~~~~~~l~~~i~---~~t~lv~i~~~~n~tG~~~-~~~~I~~l~~~~g~~vivD~a~~~g~~~~-~~~~~ 224 (424)
T PLN02855 150 LKFVGLTPDEVLDVEQLKELLS---EKTKLVATHHVSNVLGSIL-PVEDIVHWAHAVGAKVLVDACQSVPHMPV-DVQTL 224 (424)
T ss_pred EEEEecCCCCCcCHHHHHHHhc---cCceEEEEeCccccccccC-CHHHHHHHHHHcCCEEEEEhhhhcCCcCC-Cchhc
Confidence 9999998778899999999997 789999999984 699998 89999999999999999999996554433 34567
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCC------C--C---CCCCCCCCCCCCCcchhhhH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGG------I--P---APEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~------~--~---~~~~~~~~~~i~s~~~g~~~ 851 (985)
++|++++|+||.+ |++|+|++++++++.+.+++...|++.. . . ..+.+.+|.++ .
T Consensus 225 ~~d~~~~s~~K~~------gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~--------~ 290 (424)
T PLN02855 225 GADFLVASSHKMC------GPTGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAI--------G 290 (424)
T ss_pred CCCEEEeeccccc------CCCccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHH--------H
Confidence 8999999999954 3447999999988776666543333210 0 0 00112222222 1
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc--CCeeecCC--CCceeeEEEEEecCccccCCCCHHHHHHHH
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH--YPILFRGV--NGTVAHEFIVDLRGLKNTAGIEPEDVAKRL 927 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g--~~l~~~~~--~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L 927 (985)
......+.+..+...|+.++.++..+++++++++|++. +++..+.+ .....+.+.+.++ +.+..++.+.|
T Consensus 291 ~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~------~~~~~~v~~~L 364 (424)
T PLN02855 291 EAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVE------GIHPTDLSTFL 364 (424)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEEC------CcCHHHHHHHh
Confidence 12223344555555677777888899999999999763 33321111 0111223445554 45788999999
Q ss_pred HHC-CCccCC---CCC------CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 928 MDY-GFHGPT---MSW------PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 928 ~~~-Gi~~~~---~~~------p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.++ ||.+.. +.. ..++.+|||++.++|.+|||+ +++.|++++..++.
T Consensus 365 ~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~--l~~~l~~~~~~~~~ 421 (424)
T PLN02855 365 DQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEVDA--FIHALKDTIAFFSS 421 (424)
T ss_pred cccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHHHH--HHHHHHHHHHHHHh
Confidence 887 998753 111 124789999999999999999 88999998877643
No 53
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=99.92 E-value=2.8e-23 Score=240.65 Aligned_cols=344 Identities=19% Similarity=0.215 Sum_probs=236.8
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCccc-ccc--cccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHH
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCH-SMI--PLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNN 636 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~-~~~--~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e 636 (985)
..| +.+..+++++.++..+..+|..+.. +.. .+++|.+...+...... ..+.+-+...+ +.++++.++..+
T Consensus 32 ~~p--~~g~p~~~v~~~l~~~~~~d~~~~~~~p~~~~~~~~~~~~~~~a~~~~---~~~~~~nl~d~-~~~p~a~~~E~~ 105 (460)
T COG0076 32 MAP--EKGEPLEEVLDELAELLIKDELYLDGHPRANLAGFCPTRVPPVAAELL---VSALNKNLGDP-DESPAAAELEER 105 (460)
T ss_pred cCC--ccCCchhhHHHHHHHHhhcccccccCCcceEEEccCCCCCHHHHHHHH---HHHHhhcCCCc-ccChhHHHHHHH
Confidence 456 5788999999999999888865544 222 23444333333222111 12223334444 667899999999
Q ss_pred HHHHHHHHhCCCc-c-ceecCcHHHHHHHHHHHHHHHHHh-c---CC--CCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 637 LGEWLCTITGFDS-F-SLQPNAGAAGEYAGLMVIRAYHKA-R---GD--HHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 637 ~~~~la~l~G~~~-~-~~~~~sGa~a~~a~l~air~~~~~-~---g~--~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
+..|+++++|.+. . ..+..+|+++++-+++++|..... . +. ...++||+|..+|.++.+++.+.|++.+.+|
T Consensus 106 ~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~ 185 (460)
T COG0076 106 VVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVP 185 (460)
T ss_pred HHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHHHHHHhCCCceeEE
Confidence 9999999999954 2 356677888888778888765421 1 10 1234799999999999999999999999999
Q ss_pred CCC-CCCCCHHHHHHHHHhcCCCEEE--EEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCC-Cc--
Q 001989 709 TDA-KGNINIEELRKAAEANRDNLST--LMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP-GY-- 781 (985)
Q Consensus 709 ~d~-~g~iD~e~L~~~i~~~~~~t~~--Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~p-g~-- 781 (985)
.++ +.++|+++|+++|+ ++|.. |+.+.++ .+|.++ ||++|+++|+++|+|+|||+|..-.+..+.++ +.
T Consensus 186 ~~~~~~~id~~~l~~~i~---~~t~~g~vV~~aGtT~~G~iD-di~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~ 261 (460)
T COG0076 186 TVPTDYRIDVDALEEAID---ENTIGGVVVGTAGTTDTGSID-DIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWD 261 (460)
T ss_pred eccCccccCHHHHHHHHH---hhccCceEEEEecCCCCCccC-CHHHHHHHHHHcCCcEEEEccccceeecccCccchhh
Confidence 988 79999999999999 66665 8877776 599999 99999999999999999998853222222222 22
Q ss_pred ---cCCcEEEeCCcccccccCCCCCCceEEEEEccc--ccCcCC--CCccccCCCCCCCCCCCCCCCCCCcchhhhHHHH
Q 001989 782 ---IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--LAPFLP--SHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 782 ---~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~--l~~~lp--~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
.++|.++.|+||++..|+ ++|+++.++. +.+.+. ..+.+.+ + .....+.+++.| ..++
T Consensus 262 f~l~~vdSIt~d~HK~g~aP~-----~~G~il~rd~e~l~~~~~~~~~yl~~~-~-------~~~~ti~~sr~~--~~~~ 326 (460)
T COG0076 262 FGLEGVDSITVDGHKYGLAPI-----GCGVVLFRDEEALRRILIFADYYLPGG-G-------IPNFTILGSRPG--RQAL 326 (460)
T ss_pred cCCCCceEEEECcccccCCCC-----CceEEEEECHHHhhhhhhcccccCCCC-C-------cCceeEeeccch--HHHH
Confidence 268999999999987764 5667887754 332211 1111100 0 001112222222 2456
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-c-CCeeecCCCCceeeEEEEEecCccccCCCC-HHHHHHHHHHCC
Q 001989 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-H-YPILFRGVNGTVAHEFIVDLRGLKNTAGIE-PEDVAKRLMDYG 931 (985)
Q Consensus 855 ~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g-~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~-~~~v~~~L~~~G 931 (985)
+.|+.|+.+|.+||+++.++.+++++|++++|++ + ++++.. +..+.++++.++ ..+ ..+..+++.+.|
T Consensus 327 ~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~----p~l~~V~fr~~~-----~~~~~~~~~~~~~~~g 397 (460)
T COG0076 327 ALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNE----PELPIVAFRLKD-----DEDTLADLSERLDRRG 397 (460)
T ss_pred HHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecC----CccceEEEEcCC-----cccchhchHHHHHhcC
Confidence 7899999999999999999999999999999987 4 777542 345555666531 112 556777788889
Q ss_pred CccCCC
Q 001989 932 FHGPTM 937 (985)
Q Consensus 932 i~~~~~ 937 (985)
|.++..
T Consensus 398 w~v~~~ 403 (460)
T COG0076 398 WQVPAQ 403 (460)
T ss_pred ceeecc
Confidence 988653
No 54
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=99.92 E-value=5.9e-23 Score=236.14 Aligned_cols=303 Identities=18% Similarity=0.218 Sum_probs=213.8
Q ss_pred hhHHHHHHHHHHHHHHHhCCCc-cc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCC
Q 001989 628 QGYQEMFNNLGEWLCTITGFDS-FS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCG 701 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~-~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G 701 (985)
....++++++++.+++++|++. .. ++..+++.+...++..+... ..++++|++++..|.++... ++..|
T Consensus 39 ~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~-----~~~g~~vl~~~~~~~s~~~~~~~~~~~~g 113 (371)
T PF00266_consen 39 REFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNP-----LKPGDEVLVTSNEHPSNRYPWEEIAKRKG 113 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHH-----GTTTCEEEEEESSHHHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccccc-----cccccccccccccccccccccccccccch
Confidence 4566788899999999999988 54 44455665665444444211 13678999988877776522 34789
Q ss_pred cEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Q 001989 702 MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 780 (985)
Q Consensus 702 ~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg 780 (985)
++++.++.+.++.+|+++++++|+ +++++|++++. +.+|++. |+++|+++||++|++++||++|+++...+ +..
T Consensus 114 ~~v~~i~~~~~~~~~~~~~~~~l~---~~~~lv~~~~~~~~tG~~~-pi~~I~~~~~~~~~~~~vD~~~~~g~~~i-d~~ 188 (371)
T PF00266_consen 114 AEVRVIPADPGGSLDLEDLEEALN---PDTRLVSISHVENSTGVRN-PIEEIAKLAHEYGALLVVDAAQSAGCVPI-DLD 188 (371)
T ss_dssp EEEEEEEEGTTSSCSHHHHHHHHH---TTESEEEEESBETTTTBBS-SHHHHHHHHHHTTSEEEEE-TTTTTTSS---TT
T ss_pred hhhccccccccchhhhhhhhhhhc---cccceEEeecccccccEEe-eeceehhhhhccCCceeEechhccccccc-ccc
Confidence 999999998889999999999998 89999999986 5699998 89999999999999999999997666554 567
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccC-CCC----------CCCCCCCCCCCCCCcchhh
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVST-GGI----------PAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~-~~~----------~~~~~~~~~~~i~s~~~g~ 849 (985)
++++|++++|+|| |+ |+||+|++++++++...+.+...++. .+. ..++.+.+|.++.
T Consensus 189 ~~~~D~~~~s~~K-l~-----gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~------ 256 (371)
T PF00266_consen 189 ELGADFLVFSSHK-LG-----GPPGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVP------ 256 (371)
T ss_dssp TTTESEEEEESTS-TT-----SSSTEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HH------
T ss_pred ccccceeeecccc-cC-----CCCchhhheehhhhhhccccccccccccccccchhcccccccccccccceeee------
Confidence 8899999999999 74 55799999999876655432222221 000 0011122222221
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCC--CCceeeEEEEEecCccccCCCCHHHHHHHH
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGV--NGTVAHEFIVDLRGLKNTAGIEPEDVAKRL 927 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~--~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L 927 (985)
...+...++..+...|++++.++..++++++.+.|++...+...++ .......+.+.++ +.+..++.+.|
T Consensus 257 --~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~L 328 (371)
T PF00266_consen 257 --AIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLP------GSDADDVVKYL 328 (371)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEET------TSSHHHHHHHH
T ss_pred --hhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeec------CCCHHHHHHHH
Confidence 1222234566666778888888999999999999987434433221 1112223455554 57889999999
Q ss_pred HHCCCccCC---CCCC------CCCEEEEeccCCCCHHHHHH
Q 001989 928 MDYGFHGPT---MSWP------VPGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 928 ~~~Gi~~~~---~~~p------~~~~lris~t~~~t~eeId~ 960 (985)
.++||.+.. +..| ..+.+|||++.++|+||||+
T Consensus 329 ~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~ 370 (371)
T PF00266_consen 329 EERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDR 370 (371)
T ss_dssp HHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHH
T ss_pred hhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhh
Confidence 999998753 2111 24899999999999999998
No 55
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=99.92 E-value=9.4e-23 Score=236.65 Aligned_cols=306 Identities=16% Similarity=0.140 Sum_probs=205.2
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH----HHHHHCC
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP----ATAAMCG 701 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~----~~a~~~G 701 (985)
..+..+.++++++.+++++|.+...+.. ++++++...+..++.. ..+++++||+++..|.++. ..++..|
T Consensus 55 ~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~-----~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g 129 (397)
T TIGR01976 55 SRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAISR-----RWGPGDEVIVTRLDHEANISPWLQAAERAG 129 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHh-----cCCCCCEEEEcCCchHhHHHHHHHHHHhcC
Confidence 3566778899999999999987644433 4444443222222211 0146789999988887653 2356789
Q ss_pred cEEEEEcCCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCC
Q 001989 702 MKIVSVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 779 (985)
Q Consensus 702 ~~vv~v~~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~p 779 (985)
++++.++.++ ++.+|+++++++++ ++|++|++++|+ .+|.+. |+++|+++||++|+++++|++|..+... .+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~l~~~i~---~~~~lv~i~~~~n~tG~~~-~~~~i~~~~~~~~~~~ivD~a~~~~~~~-~~~ 204 (397)
T TIGR01976 130 AKVKWARVDEATGELHPDDLASLLS---PRTRLVAVTAASNTLGSIV-DLAAITELVHAAGALVVVDAVHYAPHGL-IDV 204 (397)
T ss_pred CEEEEEeccccCCCcCHHHHHHhcC---CCceEEEEeCCCCCCCccC-CHHHHHHHHHHcCCEEEEehhhhccccC-CCH
Confidence 9999999876 68999999999997 789999999984 699998 8999999999999999999998644332 244
Q ss_pred CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHH
Q 001989 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 780 g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~ 859 (985)
.++++|++++++||+| ||++|++++++++.+.+......+.......+.+.++.++ +....+..|..+
T Consensus 205 ~~~~~d~~~~s~~K~~-------g~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~-----~~~~~l~~al~~ 272 (397)
T TIGR01976 205 QATGADFLTCSAYKFF-------GPHMGILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQY-----ELLAGVVAAVDY 272 (397)
T ss_pred HHcCCCEEEEechhhc-------CCceEEEEEcHHHHhhCCCccccCccCCCcchhcCCCCCH-----HHHHHHHHHHHH
Confidence 5678999999999997 3668999999876655543211110000000112222222 122333444455
Q ss_pred HHHhcH-----------HHHHHHHHHHHHHHHHHHHHhhc-c-CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHH
Q 001989 860 IAMMGS-----------KGLTEASKIAILNANYMAKRLEK-H-YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 860 l~~lg~-----------eGl~~~~~~~~~~a~~l~~~L~~-g-~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~ 926 (985)
+..+|. +++++..++..+.+++++++|++ + +++....+.....+.+.+.++ +.+..++.++
T Consensus 273 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~ 346 (397)
T TIGR01976 273 LAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVH------GLPPQRVVRR 346 (397)
T ss_pred HHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeC------CcCHHHHHHH
Confidence 555542 13556666778889999999986 2 444321111112233444443 4567889999
Q ss_pred HHHCCCccCCCC-C----------C-CCCEEEEeccCCCCHHHHHH
Q 001989 927 LMDYGFHGPTMS-W----------P-VPGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 927 L~~~Gi~~~~~~-~----------p-~~~~lris~t~~~t~eeId~ 960 (985)
|.++||.+.... + + ..+.+|||++.++|++|||+
T Consensus 347 L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~ 392 (397)
T TIGR01976 347 LADQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDR 392 (397)
T ss_pred HHHCCeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHH
Confidence 999999986431 1 1 13689999999999999999
No 56
>PRK02948 cysteine desulfurase; Provisional
Probab=99.92 E-value=1.7e-22 Score=233.10 Aligned_cols=310 Identities=15% Similarity=0.167 Sum_probs=212.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCcccee-cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH---HHHCCcEE
Q 001989 629 GYQEMFNNLGEWLCTITGFDSFSLQ-PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT---AAMCGMKI 704 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~~~~-~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~---a~~~G~~v 704 (985)
...+.++++++.+++++|.+...+. .+++++++..++.++.. .. ..++++|+++...|+++..+ ++..|+++
T Consensus 40 ~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~---~~-~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v 115 (381)
T PRK02948 40 TASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLN---AL-PQNKKHIITTPMEHASIHSYFQSLESQGYTV 115 (381)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHH---hc-cCCCCEEEECCcccHHHHHHHHHHHhCCCEE
Confidence 3456788999999999998765544 44556665444433321 10 12567899998888877654 45679999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g 783 (985)
+.+|++++|.+|+++|+++++ +++++|++++|+ .+|.+. |+++|.++|+++|++++||++|..+...+ ...+++
T Consensus 116 ~~v~~~~~~~~d~~~l~~~l~---~~~~lv~~~~~~n~tG~~~-~~~~I~~l~~~~~~~vivD~~~~~g~~~~-~~~~~~ 190 (381)
T PRK02948 116 TEIPVDKSGLIRLVDLERAIT---PDTVLASIQHANSEIGTIQ-PIAEIGALLKKYNVLFHSDCVQTFGKLPI-DVFEMG 190 (381)
T ss_pred EEEeeCCCCCCCHHHHHHhcC---CCCEEEEEECCcCCcEeeh-hHHHHHHHHHHcCCEEEEEChhhcccccc-CcccCC
Confidence 999998889999999999997 788999999985 799998 89999999999999999999886543332 345678
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEccccc--CcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLA--PFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~--~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~ 861 (985)
+|+++.++||++ |.+|+|++++++++. +..++. .. ..+.+.++.++. ...++.+.+.
T Consensus 191 ~d~~~~s~~K~~------gp~G~G~l~~~~~~~~~~~~~~~----~~---~~~~~~~t~~~~--------~~~a~~~al~ 249 (381)
T PRK02948 191 IDSLSVSAHKIY------GPKGVGAVYINPQVRWKPVFPGT----TH---EKGFRPGTVNVP--------GIAAFLTAAE 249 (381)
T ss_pred CCEEEecHHhcC------CCCcEEEEEEcCCCCCCCcccCC----CC---CCCcCCCCccHH--------HHHHHHHHHH
Confidence 999999999976 345799999987641 111110 00 000111222221 1222223344
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCcee-eEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-
Q 001989 862 MMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVA-HEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS- 938 (985)
Q Consensus 862 ~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~-~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~- 938 (985)
.+. +++.+..++..++++++.++|++ ++++...+...... ..+.+.++ +.+..++...|.++||.++...
T Consensus 250 ~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~l~~~gI~v~~g~~ 322 (381)
T PRK02948 250 NIL-KNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTIK------GIEGQYTMLECNRRGIAISTGSA 322 (381)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCccCcCCEEEEEeC------CCCHHHHHHhcccCCEEEEchHh
Confidence 332 35667777888999999999987 55554322111111 11222332 4567888889989999976311
Q ss_pred ----C--C-------------CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccC
Q 001989 939 ----W--P-------------VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 939 ----~--p-------------~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~ 977 (985)
+ | ..+.+|||++.++|++|+|+ +++.|+++++.+-.|
T Consensus 323 c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~--l~~~l~~~~~~~~~~ 378 (381)
T PRK02948 323 CQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDT--TIHALETIGNQFYRG 378 (381)
T ss_pred cCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHH--HHHHHHHHHHHHhcc
Confidence 1 1 13689999999999999999 889999988766544
No 57
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=99.92 E-value=1.2e-22 Score=236.22 Aligned_cols=314 Identities=16% Similarity=0.141 Sum_probs=213.3
Q ss_pred HHHHHHHHHHHHHHHhCCC-ccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH----HHHHHCCcE
Q 001989 630 YQEMFNNLGEWLCTITGFD-SFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP----ATAAMCGMK 703 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~-~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~----~~a~~~G~~ 703 (985)
..+.++++++.+++++|.+ ... ++.++++++...++.++. .. ...++++||+++..|.++. ..++..|++
T Consensus 60 ~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~---~~-~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~ 135 (403)
T TIGR01979 60 ATEAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWG---DS-NLKAGDEIVISEMEHHANIVPWQLLAERTGAT 135 (403)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhh---hh-cCCCCCEEEECcchhhHHHHHHHHHHHhcCcE
Confidence 4456788999999999997 333 444555555433332221 00 1136789999998887653 234578999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
++.++++++|.+|+++++++++ ++|++|++++| |.+|.+. |+++|+++||++|+++++|++|..+...+ +...+
T Consensus 136 ~~~v~~~~~~~~~~~~l~~~i~---~~~~lv~~~~~~~~tG~~~-~~~~i~~~~~~~~~~~ivD~a~~~g~~~~-~~~~~ 210 (403)
T TIGR01979 136 LKFIPLDDDGTLDLDDLEKLLT---EKTKLVAITHVSNVLGTVN-PVEEIAKLAHQVGAKVLVDGAQAVPHMPV-DVQAL 210 (403)
T ss_pred EEEEecCCCCCCCHHHHHHHhc---cCCeEEEEEcccccccccC-CHHHHHHHHHHcCCEEEEEchhhcCcccc-Ccccc
Confidence 9999998889999999999997 78999999998 4699998 89999999999999999999986443322 33567
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCC-CCC-----C-----CCCCCCCCCCCCcchhhhH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTG-GIP-----A-----PEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~-~~~-----~-----~~~~~~~~~i~s~~~g~~~ 851 (985)
++|++++|+||++ |++|+|++++++++.+.++....|+.. +.. . ++.+.++.+ ..
T Consensus 211 ~~d~~~~s~~K~~------gp~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~--------~~ 276 (403)
T TIGR01979 211 DCDFYVFSGHKMY------GPTGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPN--------IA 276 (403)
T ss_pred CCCEEEEeccccc------CCCCceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCcc--------HH
Confidence 8999999999976 335789999998776666533222210 000 0 001111111 11
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
.+.+.++.++.+...|+.++.++..++++++.++|++ ++++..+.......+.+.+.++ +.+..++.+.|.+
T Consensus 277 ~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~~~L~~ 350 (403)
T TIGR01979 277 GVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVE------GVHPHDVGTILDE 350 (403)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeC------CcCHHHHHHHHhh
Confidence 2223344555555556677778888999999999976 3444221111111223445554 4567889999999
Q ss_pred CCCccCC---CC------CCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 930 YGFHGPT---MS------WPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 930 ~Gi~~~~---~~------~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+||.+.. +. +..++++|||++.++|++||++ +++.|+++++.+
T Consensus 351 ~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~--l~~~l~~~~~~~ 402 (403)
T TIGR01979 351 EGIAVRSGHHCAQPLMRRFGVPATCRASFYIYNTEEDIDA--LVEALKKVRKFF 402 (403)
T ss_pred CCEEEcchhhhhHHHHHHhCCCCEEEEEeccCCCHHHHHH--HHHHHHHHHHHh
Confidence 9998753 11 1125789999999999999999 888888876643
No 58
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=99.91 E-value=2.5e-22 Score=231.08 Aligned_cols=309 Identities=18% Similarity=0.179 Sum_probs=210.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCC-ccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH----HHHHHCC
Q 001989 628 QGYQEMFNNLGEWLCTITGFD-SFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP----ATAAMCG 701 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~-~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~----~~a~~~G 701 (985)
+...+.+.++++.+++++|.+ ... ++.+++++|...++.++. . +..++++||+++..|+++. ..++..|
T Consensus 39 ~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~---~--~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g 113 (373)
T cd06453 39 ARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLG---R--ANKPGDEIVTSVMEHHSNIVPWQQLAERTG 113 (373)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhh---h--cCCCCCEEEECcchhHHHHHHHHHHHhhcC
Confidence 445667788999999999988 433 445556665543333332 1 0016789999988887642 2245779
Q ss_pred cEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Q 001989 702 MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 780 (985)
Q Consensus 702 ~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg 780 (985)
++++.++.++++.+|+++|+++++ +++++|++++|+ ++|.+. |+++|.++|+++|+++++|+++..+...+ ...
T Consensus 114 ~~~~~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~~~tG~~~-~~~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~ 188 (373)
T cd06453 114 AKLKVVPVDDDGQLDLEALEKLLT---ERTKLVAVTHVSNVLGTIN-PVKEIGEIAHEAGVPVLVDGAQSAGHMPV-DVQ 188 (373)
T ss_pred cEEEEeecCCCCCcCHHHHHHHhc---CCceEEEEeCcccccCCcC-CHHHHHHHHHHcCCEEEEEhhhhcCceee-ecc
Confidence 999999998889999999999997 689999999984 699998 89999999999999999999985333221 234
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCC-CC-----CCCCC-CCCCCCCCCcchhhhHHH
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTG-GI-----PAPEK-SQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~-~~-----~~~~~-~~~~~~i~s~~~g~~~~~ 853 (985)
.+++|++++|+||+|+ ++|+|++++++++.+.+.....|+.. +. ..+.. ...+ ...+ + +...+
T Consensus 189 ~~~~d~~~~s~~K~~~------~~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~t-~--~~~~~ 258 (373)
T cd06453 189 DLGCDFLAFSGHKMLG------PTGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKF-EAGT-P--NIAGA 258 (373)
T ss_pred ccCCCEEEeccccccC------CCCcEEEEEchHHhhcCCCeecCCCccccccccccccCCCcccc-CCCC-C--CHHHH
Confidence 6789999999999984 47889999998776655433222110 00 00000 0000 0001 1 11223
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001989 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 854 ~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~G 931 (985)
.+.++.+..+..+|++++.++..++++++.+.|++ ++++.. .+ ....+.+.+.++ +.+..++.++|.++|
T Consensus 259 ~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~-~~~~~~~~~~~~------~~~~~~i~~~l~~~g 330 (373)
T cd06453 259 IGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYG-DA-EDRAGVVSFNLE------GIHPHDVATILDQYG 330 (373)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeC-Cc-cccCCeEEEEEC------CcCHHHHHHHHHHCC
Confidence 34456677777778888888888999999999986 334431 11 112223455543 357789999999999
Q ss_pred CccCCCC---------CCCCCEEEEeccCCCCHHHHHHHHccCC
Q 001989 932 FHGPTMS---------WPVPGTLMIEPTESESKSWTGIVMLSSP 966 (985)
Q Consensus 932 i~~~~~~---------~p~~~~lris~t~~~t~eeId~~~~~~~ 966 (985)
|.+.... ....+++|||++.++|.+|||+ ++++
T Consensus 331 i~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~--~~~~ 372 (373)
T cd06453 331 IAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDA--LVEA 372 (373)
T ss_pred EEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHH--HHhh
Confidence 9875311 1125799999999999999999 5444
No 59
>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]
Probab=99.91 E-value=1.4e-22 Score=222.58 Aligned_cols=378 Identities=15% Similarity=0.194 Sum_probs=266.0
Q ss_pred CCCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCc--cccccccccccccccCCCCchhhhhhHHHHHHH
Q 001989 559 LTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNA--TTEMMPVTWPSFANIHPFAPADQAQGYQEMFNN 636 (985)
Q Consensus 559 ~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~--~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e 636 (985)
-++| ..+++.+++++.+++....|-.+..+.. ++.++... ..+........ ++|.++ +.+++..++..+
T Consensus 54 ~~lP--~~gl~~d~v~~~i~~~~~ld~~~~~~~v---S~~v~~~~~~~~~l~~~~~~k---~N~l~~-d~fp~~~~~e~~ 124 (491)
T KOG1383|consen 54 FTLP--SKGLPKDAVLELINDELMLDGNPRLGLA---SGVVYWGEPELDKLIMEAYNK---FNPLHP-DEFPVVRKLEAE 124 (491)
T ss_pred ecCC--CCCCCHHHHHHHHHHHhccCCCcccCee---eEEEecCCcchhhHHHHHHhh---cCccCc-cccchhHHHHHH
Confidence 4688 6899999999999988777644433322 22222221 12222212222 477777 889999999999
Q ss_pred HHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHh----cCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-
Q 001989 637 LGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKA----RGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA- 711 (985)
Q Consensus 637 ~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~----~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~- 711 (985)
+..|+|.+++.+...+.. .++.+.++++++.+.|+.. +|. .+++|+++.+.|..+.++++.++++++.||+++
T Consensus 125 ~Vnm~~~L~~~~~~~~g~-~t~G~Ses~l~~~k~~~~~r~~~k~I-~~p~iv~~~~v~~a~eK~a~yf~v~l~~V~~~~~ 202 (491)
T KOG1383|consen 125 CVNMIANLFNAPSDSCGC-GTVGGSESGLAAKKSYRNRRKAQKGI-DKPNIVTPQNVHAAFEKAARYFEVELREVPLDEG 202 (491)
T ss_pred HHHHHHHHhcCCccccCc-cccccchHHHHHHHHHHHHHHhccCC-CCccccchHHHHHHHHHHHhhEEEEEEeeecccc
Confidence 999999999988653322 1112234667777766532 232 356789999889889999999999999999984
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHH-cCCEEEEEccccccccCCCCC-C-----cc-
Q 001989 712 KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHD-NGGQVYMDGANMNAQVGLTSP-G-----YI- 782 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~-~galliVD~a~~~~~~~l~~p-g-----~~- 782 (985)
+.++|+..+.+.++ +||++|+...|+ ++|.++ |+++|.++.-+ +++.+|||++ .|+|..| + .|
T Consensus 203 ~~~~D~~k~~~~i~---eNti~lv~~~~~~p~G~~e-~ve~l~~l~~e~w~ipiHvDa~----~GgFi~p~~~~~~~~fd 274 (491)
T KOG1383|consen 203 DYRVDPGKVVRMID---ENTIMLVGSLPNFPTGEIE-DVEKLADLLLEIWDIPIHVDAC----LGGFINPAGYLNEEEFD 274 (491)
T ss_pred ceEecHHHHHHHhc---cceEEEEEEcCCCCccchh-hHHHHHHHHHHHhCCceeeccc----CccccccccccCccccc
Confidence 68999999999998 899999999998 599999 99999999999 9999999965 5666554 2 22
Q ss_pred ----CCcEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCC-CCCCCCCCCCCcchhhhHHHHHH
Q 001989 783 ----GADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAP-EKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 783 ----g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~-~~~~~~~~i~s~~~g~~~~~~~a 856 (985)
++-.+..+.||+ |+..+|.|.+.-+ +++.+. .++-.+ .| +..+++.++..+..| ...+++
T Consensus 275 Fr~p~V~Sisa~~HKY-----Gl~~~G~~~vl~r~k~~~~~---q~~~~~----~w~Gg~y~s~TlngSR~g--~~va~~ 340 (491)
T KOG1383|consen 275 FRVPGVTSISADGHKY-----GLAPAGSSWVLYRNKELLPH---QLFFHT----DWLGGIYASPTLNGSRPG--SQVAAQ 340 (491)
T ss_pred cCCCCceeEeecccee-----eeeecCcEEEEEcccccccc---eEEEec----cccCccccCcccccCCcc--cHHHHH
Confidence 245568889995 3333577766655 333221 111000 01 112234444433333 335678
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc--CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCcc
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEKH--YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHG 934 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g--~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~ 934 (985)
|+.|..+|.+||++..+++.+++++|++.|++. +.+. ++ |.. .++.+.. ...+..++.+.|.++||++
T Consensus 341 wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~--gk--p~v--s~~~~~s----~~~~i~elsd~l~~~GW~l 410 (491)
T KOG1383|consen 341 WAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKIV--GK--PLV--SFILFGS----NDVNIFELSDLLRKKGWIL 410 (491)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceec--CC--CcE--EEEEccC----CccchhhhhHHHHhcCcCc
Confidence 999999999999999999999999999999973 4432 22 222 1222221 2467889999999999999
Q ss_pred CCCCCCCCCEEEEeccCCCCHHHH-HHHHccCChhHHHHhhcc-CCccccc
Q 001989 935 PTMSWPVPGTLMIEPTESESKSWT-GIVMLSSPSEKKLHRLKM-GRQISTT 983 (985)
Q Consensus 935 ~~~~~p~~~~lris~t~~~t~eeI-d~~~~~~~l~~~~~~~~~-~~~~~~~ 983 (985)
+..++| ..++||++..++.+++ |+ |+.-+++++++++. ..+++..
T Consensus 411 nalq~P--~a~Hi~vt~~~~~~~~A~~--~v~Di~~~~~el~~~p~~~~~~ 457 (491)
T KOG1383|consen 411 NALQFP--AAIHICVTRVHAREDVADR--FVADIRKVVEELKSLPESKTHG 457 (491)
T ss_pred cccCCC--CceEEEEEeeeccHHHHHH--HHHHHHHHHHHHHhCCCcccCc
Confidence 988887 5999999999988885 55 67788889988877 5555543
No 60
>PLN02880 tyrosine decarboxylase
Probab=99.91 E-value=1.3e-22 Score=238.96 Aligned_cols=383 Identities=13% Similarity=0.071 Sum_probs=244.8
Q ss_pred cCCCCHHHHHHHHHHHhccccCcccccccccccc--cCCCc-cccccccccccccccCCCCchhhhhhHHHHHHHHHHHH
Q 001989 565 NKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCT--MKLNA-TTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWL 641 (985)
Q Consensus 565 ~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t--~~~~~-~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~l 641 (985)
+++.+..++++.+.+.-.......+...|+|+-. +.... ..++....+.. +...| +.+++..++..++.+|+
T Consensus 57 ~~~~~~~~~l~~~~~~i~~~~~~~~hP~f~~~~~~~~~~~~~lad~l~~~~n~--~~~~~---~~sp~~~~lE~~vi~wl 131 (490)
T PLN02880 57 NQPETLDQVLDDVQAKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNI--VGFSW---ITSPAATELEMIVLDWL 131 (490)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeccCCCcHHHHHHHHHHHhhcc--CCccc---ccCcccHHHHHHHHHHH
Confidence 5667888999999875554533334567777421 11111 12222211111 11122 34567888999999999
Q ss_pred HHHhCCCcc--------ceecCcHHHHHHHHHHHHHHHHH-hcCCC--CCCEEEEcCCCCcccHHHHHHCCc---EEEEE
Q 001989 642 CTITGFDSF--------SLQPNAGAAGEYAGLMVIRAYHK-ARGDH--HRNVCIIPVSAHGTNPATAAMCGM---KIVSV 707 (985)
Q Consensus 642 a~l~G~~~~--------~~~~~sGa~a~~a~l~air~~~~-~~g~~--~~~~IIv~~~~Hg~~~~~a~~~G~---~vv~v 707 (985)
++++|++.. .++.++|+++++.++.++|.... ..|.. ++-.|++++.+|.+..+++...|+ .++.|
T Consensus 132 ~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~V 211 (490)
T PLN02880 132 AKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQIAGIHPENCRLL 211 (490)
T ss_pred HHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHHHcCCCHHHEEEe
Confidence 999999863 34556778888888888886432 22211 233566798899999999999998 48889
Q ss_pred cCCC--CCCCCHHHHHHHHHhc---CCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCC----
Q 001989 708 GTDA--KGNINIEELRKAAEAN---RDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT---- 777 (985)
Q Consensus 708 ~~d~--~g~iD~e~L~~~i~~~---~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~---- 777 (985)
|+|. ++++|+++|+++|++. .....+|+.+..+ .+|.++ |+++|+++|+++|+|+|||+|+..+.....
T Consensus 212 p~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiD-pl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~ 290 (490)
T PLN02880 212 KTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVD-PLLELGKIAKSNGMWFHVDAAYAGSACICPEYRH 290 (490)
T ss_pred ecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccC-cHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHH
Confidence 9975 5799999999999732 1124667777776 499999 899999999999999999999742211110
Q ss_pred -CCCccCCcEEEeCCcccccccCCCCCCceEEEEEccc--ccCcC---CCCccccCCCC-CCCC-CCCCCCCCCCcchhh
Q 001989 778 -SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--LAPFL---PSHPVVSTGGI-PAPE-KSQPLGTIAAAPWGS 849 (985)
Q Consensus 778 -~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~--l~~~l---p~~~~g~~~~~-~~~~-~~~~~~~i~s~~~g~ 849 (985)
..+-.++|.++.++|||++.|++ .|++++++. +...+ +.++.....+. ..+. .... -.++ .
T Consensus 291 ~l~gie~aDSit~d~HKwl~~P~~-----~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~--i~~~----r 359 (490)
T PLN02880 291 YIDGVEEADSFNMNAHKWFLTNFD-----CSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQ--IPLG----R 359 (490)
T ss_pred HhcCchhcCEEEECchhhcCCCcc-----EEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccC--cCCC----C
Confidence 12335789999999999987654 568888852 11111 11110000000 0000 0000 0011 1
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCCC-------H
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIE-------P 920 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~-------~ 920 (985)
...+...|+.|+.+|.+|++++.++.+++++++.+.|++ +++++.+ +.++.+++.+++. +.+ .
T Consensus 360 r~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~----~~~~iv~Fr~~~~----~~~~~~~~~~n 431 (490)
T PLN02880 360 RFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTP----RIFSLVCFRLVPP----KNNEDNGNKLN 431 (490)
T ss_pred cccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC----CceEEEEEEEeCC----CCChhhHHHHH
Confidence 223456799999999999999999999999999999976 4555432 2355566666421 111 1
Q ss_pred HHHHHHHHHCCCc-cCCCCCCCCCEEEEeccCC-CCHHHHHHHHccCChhHHHHhh
Q 001989 921 EDVAKRLMDYGFH-GPTMSWPVPGTLMIEPTES-ESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 921 ~~v~~~L~~~Gi~-~~~~~~p~~~~lris~t~~-~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.++.++|.+.|.. +....+.-...+|+|+.-. +|.+|||+ +++.+.++.+++
T Consensus 432 ~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~~--~~~~i~~~~~~~ 485 (490)
T PLN02880 432 HDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTA--AWKVLQDEASKL 485 (490)
T ss_pred HHHHHHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHHH--HHHHHHHHHHHH
Confidence 3466666666654 4332222246899999865 55699999 778888777665
No 61
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.91 E-value=8.2e-23 Score=224.93 Aligned_cols=337 Identities=18% Similarity=0.253 Sum_probs=236.9
Q ss_pred CHHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhC-C
Q 001989 569 TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITG-F 647 (985)
Q Consensus 569 se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G-~ 647 (985)
-+.+..+||+..+.-. ++.||+|+|.+..+...|.....+.+|.+...+ ..++.+.|+++++ +
T Consensus 37 ~D~~G~~YlDf~~Gia------v~~lGH~hP~iv~al~~Q~~kl~h~sn~~~~~~----------~~~la~~L~~~s~~~ 100 (404)
T COG4992 37 WDQQGREYLDFAAGIA------VNNLGHCHPALVEALKEQAEKLWHVSNLFYNEP----------QAELAEKLVELSPFA 100 (404)
T ss_pred ECCCCCEeeeecccee------eeccCCCCHHHHHHHHHHHHHhhhcccccCChH----------HHHHHHHHHhhCccc
Confidence 3566778888766543 668999999998877766655555555332222 3478889999997 4
Q ss_pred CccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHH---------HHHCC---cEEEEEcCCCCCC
Q 001989 648 DSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPAT---------AAMCG---MKIVSVGTDAKGN 714 (985)
Q Consensus 648 ~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~---------a~~~G---~~vv~v~~d~~g~ 714 (985)
+. .|++|||++|+|++++.+|.|.. + ..+.+||. .+++||....+ .+.++ -.++.+|.+
T Consensus 101 d~-vff~NSGaEA~EaAiKlARk~~~--~-~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfn---- 172 (404)
T COG4992 101 DR-VFFCNSGAEANEAALKLARKYTG--D-PEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFN---- 172 (404)
T ss_pred cE-EEEcCCcHHHHHHHHHHHHHHcC--C-CCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCC----
Confidence 43 57889999999999999998842 1 23456665 77899965332 22111 135567774
Q ss_pred CCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC-------
Q 001989 715 INIEELRKAAEANRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG------- 783 (985)
Q Consensus 715 iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g------- 783 (985)
|+++++++|+ ++|++|+++-- ..-|++.+ -++++.++|+++|+++|+|++| .|++++|++.
T Consensus 173 -Di~al~~ai~---~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQ----tG~GRTGk~fA~e~~gV 244 (404)
T COG4992 173 -DIEALEAAID---EDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQ----TGLGRTGKLFAYEHYGV 244 (404)
T ss_pred -CHHHHHHHhc---cCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccc----cCCCccchHHHHHHhCC
Confidence 9999999999 79999999863 46777753 3899999999999999999876 6677887653
Q ss_pred -CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 784 -ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 784 -~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
+||++.. |.| |+| --+|.+.+++.....+... ...|+|.|++++|+++.+.+..
T Consensus 245 ~PDI~tla--K~L----gGG-~PigA~la~~~~~~~~~~G------------------~HgSTfGGNpLacAv~~a~l~~ 299 (404)
T COG4992 245 EPDILTLA--KAL----GGG-FPIGAMLATEEIASAFTPG------------------DHGSTFGGNPLACAVALAVLEV 299 (404)
T ss_pred CCCEEEee--ccc----cCC-ccceeeEEchhhhhcCCCC------------------cccCCCCcCHHHHHHHHHHHHH
Confidence 7998753 766 444 4455566565544433211 1124678899999999999999
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhc---cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEK---HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~---g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~ 939 (985)
+..+++.+ +..+...+|.++|++ .++++..-.....+.. +.+. ....+.++.+.|.++|+.+....
T Consensus 300 l~~e~ll~---~v~~~g~~~~~~L~~l~~~~~~v~~vRG~GLmiG--iel~-----~~~~a~~~~~~~~~~gvL~~~a~- 368 (404)
T COG4992 300 LLEEGLLE---NVREKGEYLLQRLRELKRRYPLVKEVRGRGLMIG--IELK-----EPYRARDIVRALREEGVLVLPAG- 368 (404)
T ss_pred HcchhHHH---HHHHHHHHHHHHHHHHhhcCCceeeeecceeEEE--EEec-----CcccHHHHHHHHHHCCeEEecCC-
Confidence 99887765 566788899999986 2332211111122222 2222 11247899999999999875443
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccC
Q 001989 940 PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 940 p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~ 977 (985)
++.+|+.|+...++||||. .++.++++++....+
T Consensus 369 --~~ViR~~PpL~i~~eei~~--~~~~l~~~l~~~~~~ 402 (404)
T COG4992 369 --PNVIRFLPPLVITEEEIDE--ALDALERALAAASAR 402 (404)
T ss_pred --CCeEEecCCccCCHHHHHH--HHHHHHHHHHHhhhc
Confidence 4799999999999999999 889999999876553
No 62
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=99.91 E-value=2.1e-22 Score=230.23 Aligned_cols=311 Identities=15% Similarity=0.135 Sum_probs=212.2
Q ss_pred hHHHHHHHHHHHHHHHhCCCcc--ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCccc--HHHHHHCCcEE
Q 001989 629 GYQEMFNNLGEWLCTITGFDSF--SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN--PATAAMCGMKI 704 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~--~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~--~~~a~~~G~~v 704 (985)
...+..+++++.+++++|.+.. .+++++|++++..++. .+. .++++||++...|..+ ...++..|+++
T Consensus 29 ~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~---~~~-----~~g~~vl~~~~~~~~~~~~~~~~~~g~~~ 100 (356)
T cd06451 29 EFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALS---NLL-----EPGDKVLVGVNGVFGDRWADMAERYGADV 100 (356)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHH---HhC-----CCCCEEEEecCCchhHHHHHHHHHhCCCe
Confidence 4556788999999999998542 3556667776543333 321 3678899987656543 23467789999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCC-CEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRD-NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~-~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
+.+|.++++.+|+++++++++ + ++++|++++| |.+|.+. |+++|+++|+++|+++++|++|..+... .....+
T Consensus 101 ~~v~~~~~~~~~~~~l~~~i~---~~~~~~v~i~~~~~~~G~~~-~~~~i~~~a~~~~~~li~D~~~~~g~~~-~~~~~~ 175 (356)
T cd06451 101 DVVEKPWGEAVSPEEIAEALE---QHDIKAVTLTHNETSTGVLN-PLEGIGALAKKHDALLIVDAVSSLGGEP-FRMDEW 175 (356)
T ss_pred EEeecCCCCCCCHHHHHHHHh---ccCCCEEEEeccCCCccccc-CHHHHHHHHHhcCCEEEEeeehhccCcc-cccccc
Confidence 999998778999999999997 5 7889999988 4699998 8999999999999999999998643322 234567
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCC--CccccCCCC----CCCCCCCCCCCCCCcchhhhHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS--HPVVSTGGI----PAPEKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~--~~~g~~~~~----~~~~~~~~~~~i~s~~~g~~~~~~~a 856 (985)
++|++++++||||+.| +|+|++++++++.+.+.. ...++..+. ..+.......+.. +.....+.
T Consensus 176 ~~d~~~~s~~K~l~~p-----~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~-----~~~~~~a~ 245 (356)
T cd06451 176 GVDVAYTGSQKALGAP-----PGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTP-----PVNLLYAL 245 (356)
T ss_pred CccEEEecCchhccCC-----CCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCC-----hHHHHHHH
Confidence 8999999999999532 478999999876544321 111110000 0000000111111 11222333
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeE-EEEEecCccccCCCCHHHHHHHHHHC-CCc
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHE-FIVDLRGLKNTAGIEPEDVAKRLMDY-GFH 933 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~-~iv~~~~~~~~~g~~~~~v~~~L~~~-Gi~ 933 (985)
.+.+..+..+|+.+..++..++++++.+.|++ ++.+... + ...... +.+.++ .+.+..+++++|.++ ||.
T Consensus 246 ~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~-~~~~~~~~~~~~~-----~~~~~~~~~~~L~~~~gI~ 318 (356)
T cd06451 246 REALDLILEEGLENRWARHRRLAKALREGLEALGLKLLAK-P-ELRSPTVTAVLVP-----EGVDGDEVVRRLMKRYNIE 318 (356)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccC-c-ccCCCceEEEECC-----CCCCHHHHHHHHHHhCCEE
Confidence 45566666778888888889999999999987 5555321 1 111111 223433 245788999999998 998
Q ss_pred cCCCCCC-CCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 934 GPTMSWP-VPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 934 ~~~~~~p-~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+.....+ .++++|++++.++|+|||++ ++++|++++
T Consensus 319 ~~~g~~~~~~~~iRis~~~~~~~e~v~~--~~~~l~~~~ 355 (356)
T cd06451 319 IAGGLGPTAGKVFRIGHMGEATREDVLG--VLSALEEAL 355 (356)
T ss_pred EecccccccCCEEEEecCCCCCHHHHHH--HHHHHHHHh
Confidence 7543222 34799999999999999999 778887764
No 63
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=99.90 E-value=1.6e-21 Score=226.64 Aligned_cols=288 Identities=15% Similarity=0.129 Sum_probs=210.5
Q ss_pred HHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhh-hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 210 LESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI-QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 210 l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~-~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
.+.+.++++.+++++|.++.++.+++|+|.+++.++.++.. ..++|++|+++..+|+++...|+.. +..|++++.++.
T Consensus 46 ~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~-~~~g~~v~~v~~ 124 (402)
T TIGR02006 46 EEAVENARNQVAELIGADSREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYL-EREGFEVTYLPP 124 (402)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHH-HhcCCEEEEEcc
Confidence 46788899999999999988899999999887776654321 1247899999999999999988654 456899888754
Q ss_pred --------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecCc
Q 001989 289 --------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSAQ 357 (985)
Q Consensus 289 --------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~k 357 (985)
+++++ +++++++|+++++ |.+|.+.|+++|+++||++|++++||+ .++.|... +..++|+|+++++++
T Consensus 125 ~~~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~-a~a~g~~~~~~~~~~~D~~~~s~~ 203 (402)
T TIGR02006 125 KSNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDA-AQSVGKIPINVNELKVDLMSISGH 203 (402)
T ss_pred CCCCcCCHHHHHHhcCCCCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEc-chhcCCcccCccccCCCEEEEehh
Confidence 34555 7788999999987 789999999999999999999999943 34666443 456799999999995
Q ss_pred cccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHH
Q 001989 358 RFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVY 437 (985)
Q Consensus 358 ~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~ 437 (985)
|+.+| +|+|+++++++....+.+.+.| |.. ..+.+.||+|+ ..+.++.+++ .+
T Consensus 204 K~~gp-----~G~G~l~~~~~~~~~~~~~~~g------~~~-----------~~~~~~gt~~~---~~~~al~~al--~~ 256 (402)
T TIGR02006 204 KIYGP-----KGIGALYVRRKPRVRLEALIHG------GGH-----------ERGMRSGTLPT---HQIVGMGEAF--RI 256 (402)
T ss_pred hhcCC-----CceEEEEEccCCCCCCCceecC------CCc-----------cCCccCCCccH---HHHHHHHHHH--HH
Confidence 55333 4689999998765555443333 111 01235688887 4565666665 33
Q ss_pred hCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC--Cc-c--eEEEecCCHHHHHHHHHHcCceee------e-----
Q 001989 438 HGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP--FF-D--TVKVKCADAHAIASAAYKIEMNLR------V----- 501 (985)
Q Consensus 438 ~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~--~~-~--~~~~~~~~~~~v~~~L~~~GI~~~------~----- 501 (985)
+ .++++++.++..+++++++++|+++.++++..++ .. . .|+|......++...|. ||.++ .
T Consensus 257 ~-~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~~~~~~~~~~l~--~i~v~~G~~c~~~~~~~ 333 (402)
T TIGR02006 257 A-KEEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNYVEGESLIMALK--DLAVSSGSACTSASLEP 333 (402)
T ss_pred H-HHhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeCcCHHHHHHhcC--CEEEechhhcCCCCCCc
Confidence 3 2478889999999999999999988548876431 22 2 24444222666766663 55331 0
Q ss_pred ------------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 ------------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ------------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
...+.+|+|++.+||+||||+|+++|.+
T Consensus 334 ~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~ 373 (402)
T TIGR02006 334 SYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKS 373 (402)
T ss_pred cHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 0137899999999999999999999975
No 64
>PLN02724 Molybdenum cofactor sulfurase
Probab=99.90 E-value=5e-22 Score=247.91 Aligned_cols=350 Identities=14% Similarity=0.127 Sum_probs=235.3
Q ss_pred HHHHHhcCCCccceecCCCCCCCCCcHHHHHHHHhCCcccccc--CCChh-hHhhhHHHHHHHHHHHHHHhcCCCCc--c
Q 001989 156 HMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQY--TPYQA-EIAQGRLESLLNFQTMIADLTGLPMS--N 230 (985)
Q Consensus 156 ~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~--~pyq~-e~sqg~l~~i~e~q~~ia~L~g~~~~--~ 230 (985)
++..+ ++..|.++-|.+.+ -|..+.+. .. .|+..+ +|... ..++-+.+.+.++++.+|+++|+++. .
T Consensus 28 ~fp~l--~~~iYLD~Aatt~~---~~~~V~~~-~~--~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~ 99 (805)
T PLN02724 28 EFARL--KGVVYLDHAGATLY---SESQLEAA-LA--DFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPSDYA 99 (805)
T ss_pred Hhhhc--CCCEeEeCCCCCCC---CHHHHHHH-HH--HHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCccceE
Confidence 45555 33456665555542 33455432 21 122211 33321 24566778899999999999999765 4
Q ss_pred eeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch------------------hhh
Q 001989 231 ASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK------------------DID 292 (985)
Q Consensus 231 ~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~------------------~l~ 292 (985)
+.++.|+|.++..+..++.+ ++||+||++..+|+++.. |+.+++..|+++++++++ +|+
T Consensus 100 VvFtsnaT~alnlva~~l~~--~~gd~Iv~t~~eH~svl~-~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~ 176 (805)
T PLN02724 100 CVFTSGATAALKLVGETFPW--SSESHFCYTLENHNSVLG-IREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQ 176 (805)
T ss_pred EEEeCChHHHHHHHHHHCCC--CCCCeEEEeeccccchHH-HHHHHHHcCCeEEeccchhccccccccccccccchhhhh
Confidence 68888999776655444433 378999999999999885 546667789999887653 122
Q ss_pred c-c----------CCCEeEEEEEc-CCCCeeeccHHHHHHHHHhC-------C-cEEEEEecCccccCC-CCCCcccceE
Q 001989 293 Y-K----------SGDVCGVLVQY-PGTEGEVLDYGDFIKNAHAN-------G-VKVVMATDLLALTIL-KPPGELGADI 351 (985)
Q Consensus 293 ~-l----------~~~t~~V~v~~-pn~~G~v~di~~I~~~a~~~-------g-alliV~a~~~~lg~l-~~~~~~GaDi 351 (985)
+ + +++|++|++++ +|.+|.+.|++.|..+++.. | ++++||+ ..++|.+ .+..++|+|+
T Consensus 177 ~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDa-aQ~~g~~piDv~~~~~Df 255 (805)
T PLN02724 177 RRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDA-AKGCGTSPPDLSRYPADF 255 (805)
T ss_pred hhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeeh-hhhcCCCCCChhhcCCCE
Confidence 1 1 24568888887 58999999999775554432 3 5677842 2344433 2457899999
Q ss_pred EEecCccc-cccCCCCCCcEEEEEEchhhHhcCCCceeee-eecCC-CCcceeeecccccccccccccCCCccchhHHHH
Q 001989 352 VVGSAQRF-GVPMGYGGPHAAFLATSQEYKRMMPGRIVGV-SIDSS-GKPALRVAMQTREQHIRRDKATSNICTAQALLA 428 (985)
Q Consensus 352 ~v~s~k~l-g~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~-t~d~~-g~~~~~l~l~tre~~irre~atsni~t~~~l~a 428 (985)
+++|++|| |+|. |+|+|++++++.+.|.+.+.|+ +.+.. ....|... ..+.+.|+|.||.|+ .++.+
T Consensus 256 l~~S~HK~~GgP~-----G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~--~~~~~~rfE~GT~n~---~~i~~ 325 (805)
T PLN02724 256 VVVSFYKIFGYPT-----GLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKR--RERVEQRFEDGTISF---LSIAA 325 (805)
T ss_pred EEEecceeccCCC-----CceEEEEehhhhhhhcCCccCCCceEEEecccceeec--cccHHHHhcCCCcch---hHHHH
Confidence 99999444 3342 5899999999988888888875 22100 01112111 112345789999999 56667
Q ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC------CeEEcCCC--------CcceEEEecCC-------HHH
Q 001989 429 NMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG------TVEVQGLP--------FFDTVKVKCAD-------AHA 487 (985)
Q Consensus 429 ~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g------~~~~~~~~--------~~~~~~~~~~~-------~~~ 487 (985)
+.+++ .++...|++++.++..++++||.++|+++. ++++++.. ...+|+|++.+ ..+
T Consensus 326 l~aal--~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~ 403 (805)
T PLN02724 326 LRHGF--KLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHRE 403 (805)
T ss_pred HHHHH--HHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHH
Confidence 77776 555566899999999999999999999873 37787532 23466666543 344
Q ss_pred HHHHHHHcCceeee------------e---------------------------cCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 488 IASAAYKIEMNLRV------------V---------------------------DSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 488 v~~~L~~~GI~~~~------------~---------------------------~~~~lris~t~~~t~edId~li~aL~ 528 (985)
+.+.+.++||.++. + ..+.+|+|++.+||.+|||+|+++|.
T Consensus 404 v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~ 483 (805)
T PLN02724 404 VEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFII 483 (805)
T ss_pred HHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHH
Confidence 55555667997631 0 12789999999999999999999998
Q ss_pred C
Q 001989 529 G 529 (985)
Q Consensus 529 ~ 529 (985)
.
T Consensus 484 ~ 484 (805)
T PLN02724 484 S 484 (805)
T ss_pred H
Confidence 5
No 65
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=99.90 E-value=9.3e-22 Score=228.58 Aligned_cols=309 Identities=13% Similarity=0.154 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH---HHCCcEEEE
Q 001989 631 QEMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA---AMCGMKIVS 706 (985)
Q Consensus 631 ~~~~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a---~~~G~~vv~ 706 (985)
.+.++++++.+++++|.+... ++.++|++++..++.++..+. ..++++||++...|.++...+ +..|++++.
T Consensus 46 ~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~----~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~ 121 (402)
T TIGR02006 46 EEAVENARNQVAELIGADSREIVFTSGATESNNLAIKGIAHFY----KSKGNHIITSKTEHKAVLDTCRYLEREGFEVTY 121 (402)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhh----cCCCCEEEECCCccHHHHHHHHHHHhcCCEEEE
Confidence 466888999999999987644 445566667655544443211 135789999988887765443 456999999
Q ss_pred EcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCc
Q 001989 707 VGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGAD 785 (985)
Q Consensus 707 v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~D 785 (985)
+|++++|.+|+++|+++++ +++++|+++++ |.+|.+. |+++|+++||++|++++||++|+.+...+ +...+++|
T Consensus 122 v~~~~~~~~d~~~l~~~l~---~~~~lv~v~~~~n~tG~~~-~~~~I~~l~~~~g~~livD~a~a~g~~~~-~~~~~~~D 196 (402)
T TIGR02006 122 LPPKSNGLIDLEELKAAIR---DDTILVSIMHVNNEIGVIQ-DIAAIGEICRERKVFFHVDAAQSVGKIPI-NVNELKVD 196 (402)
T ss_pred EccCCCCcCCHHHHHHhcC---CCCEEEEEECCCcCceecc-cHHHHHHHHHHcCCEEEEEcchhcCCccc-CccccCCC
Confidence 9998889999999999997 78899999998 4699998 89999999999999999999997554332 34567999
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
++++|+||++ |.+|.|+++++++....+.....|... .++.+.++.++. ....+. ..++.+.
T Consensus 197 ~~~~s~~K~~------gp~G~G~l~~~~~~~~~~~~~~~g~~~---~~~~~~gt~~~~-----~~~al~---~al~~~~- 258 (402)
T TIGR02006 197 LMSISGHKIY------GPKGIGALYVRRKPRVRLEALIHGGGH---ERGMRSGTLPTH-----QIVGMG---EAFRIAK- 258 (402)
T ss_pred EEEEehhhhc------CCCceEEEEEccCCCCCCCceecCCCc---cCCccCCCccHH-----HHHHHH---HHHHHHH-
Confidence 9999999975 334899999997544333322222110 011122232321 111122 3334332
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCC-ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC---CC---
Q 001989 866 KGLTEASKIAILNANYMAKRLEKHYPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT---MS--- 938 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~-~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~---~~--- 938 (985)
+++.+..++...+++++.++|++...+...++.. ...+.+.+.++ +.+.+++..+|. |+.++. +.
T Consensus 259 ~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~------~~~~~~~~~~l~--~i~v~~G~~c~~~~ 330 (402)
T TIGR02006 259 EEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFN------YVEGESLIMALK--DLAVSSGSACTSAS 330 (402)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEe------CcCHHHHHHhcC--CEEEechhhcCCCC
Confidence 4566777778888999999997633332222111 11123345554 345667777663 544321 11
Q ss_pred -CC--------C-----CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 939 -WP--------V-----PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 939 -~p--------~-----~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.| + .+.+|+|+..++|+||||+ +++.|+++++.++.
T Consensus 331 ~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~--l~~~l~~~~~~~~~ 380 (402)
T TIGR02006 331 LEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDY--AVKLVKSAIDKLRE 380 (402)
T ss_pred CCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHH--HHHHHHHHHHHHHh
Confidence 01 1 3789999999999999999 88999998877643
No 66
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=99.90 E-value=1.5e-21 Score=225.33 Aligned_cols=289 Identities=17% Similarity=0.136 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHHHHhcCC-CCcceeeccchHHHHHHHHHHhhh---hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001989 209 RLESLLNFQTMIADLTGL-PMSNASLLDEGTAAAEAMAMCNNI---QKGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 209 ~l~~i~e~q~~ia~L~g~-~~~~~sl~~~~ta~~ea~~~a~~~---~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~ 284 (985)
..+.+.+....+++.+|+ ++.++.+++|+|.++..++.++.+ .+.++++|+++..+||++...+.. ++..|++++
T Consensus 40 ~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~-~~~~G~~v~ 118 (382)
T TIGR03403 40 THPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAF-LESLGVEVT 118 (382)
T ss_pred HHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHHHHhhcccCCCCEEEEcCCccHHHHHHHHH-HHHCCCEEE
Confidence 355677777778888887 577899999998766655443311 112357899999999999998864 356899998
Q ss_pred EeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEE
Q 001989 285 VSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVV 353 (985)
Q Consensus 285 ~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v 353 (985)
.++. +++++ ++++|++|++++| |.+|.+.|+++|.++||++|++++||+ ..+.|.. .+..++|+|+++
T Consensus 119 ~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~-a~~~g~~~~~~~~~~~D~~~ 197 (382)
T TIGR03403 119 YLPINEQGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDA-VQAIGKIPVDVQKAGVDFLS 197 (382)
T ss_pred EEecCCCCCCCHHHHHHhcccCCeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEec-hhhcCCCccCccccCCCEEE
Confidence 8865 34555 7788999999887 789999999999999999999999953 3455533 345689999999
Q ss_pred ecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH
Q 001989 354 GSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 354 ~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~ 433 (985)
.+++||. |.||.|++++++++ .+.+.+.|. .. ..+++.||.|+ .+++++.+++
T Consensus 198 ~s~~K~~-----gp~G~g~l~vr~~~--~~~p~~~g~------~~-----------~~~~~~gt~~~---~~~~al~~al 250 (382)
T TIGR03403 198 FSAHKFH-----GPKGVGGLYIRKGV--ELTPLFHGG------EH-----------MGGRRSGTLNV---PYIVAMGEAM 250 (382)
T ss_pred EcchhhC-----CCCceEEEEECCCC--CCCCcccCC------CC-----------CCCcccCCcCh---HHHHHHHHHH
Confidence 9995563 34578999999865 233333331 10 01134588887 4555666665
Q ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC--C-cceEEEecCC--HHHHHHHHHHcCceeee-------
Q 001989 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP--F-FDTVKVKCAD--AHAIASAAYKIEMNLRV------- 501 (985)
Q Consensus 434 ~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~--~-~~~~~~~~~~--~~~v~~~L~~~GI~~~~------- 501 (985)
.++ .++++.+.++..++.++++++|+++++++++++. . .+.+.|.+++ +.++.+.|.++||.++.
T Consensus 251 --~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~ 327 (382)
T TIGR03403 251 --RLA-NEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKGVEGEAMLWDLNKAGIAASTGSACASE 327 (382)
T ss_pred --HHH-HHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCCCHHHHHHhhccCCEEEEchhccCCC
Confidence 222 3357888899999999999999988559887532 2 2344555554 78888889999998862
Q ss_pred ----------e------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 ----------V------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ----------~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+ ..+.+|+|++.+||++|||+|+++|++
T Consensus 328 ~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~ 371 (382)
T TIGR03403 328 DLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKK 371 (382)
T ss_pred CCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHH
Confidence 0 025799999999999999999999974
No 67
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=99.90 E-value=1.7e-21 Score=225.04 Aligned_cols=308 Identities=14% Similarity=0.132 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHHhCC-Cccce-ecCcHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEcCCCCcccHHH---HHHCCcEEEE
Q 001989 633 MFNNLGEWLCTITGF-DSFSL-QPNAGAAGEYAGLMVIRAYHKAR-GDHHRNVCIIPVSAHGTNPAT---AAMCGMKIVS 706 (985)
Q Consensus 633 ~~~e~~~~la~l~G~-~~~~~-~~~sGa~a~~a~l~air~~~~~~-g~~~~~~IIv~~~~Hg~~~~~---a~~~G~~vv~ 706 (985)
.+++..+.+.+.+|. +...+ +.++++++.. ++++.+.... -..++++|+++...|+++... ++..|++++.
T Consensus 43 ~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~---~~~~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~ 119 (382)
T TIGR03403 43 AIAEALDKLYKGINARDLDDIIITSCATESNN---WVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTY 119 (382)
T ss_pred HHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHH---HHHHHHHHhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEE
Confidence 344555556666676 34444 4455555553 3333321100 011346899998888877655 3468999999
Q ss_pred EcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCc
Q 001989 707 VGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGAD 785 (985)
Q Consensus 707 v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~D 785 (985)
+|++++|.+|+++|+++++ +++++|++++| |++|.+. |+++|.++||++|+++++|++|..+...+ +..++++|
T Consensus 120 v~~~~~g~~d~~~l~~~i~---~~t~lv~~~~~~n~tG~~~-~~~~I~~la~~~g~~~ivD~a~~~g~~~~-~~~~~~~D 194 (382)
T TIGR03403 120 LPINEQGTITAEQVREAIT---EKTALVSVMWANNETGMIF-PIKEIGEICKERGVLFHTDAVQAIGKIPV-DVQKAGVD 194 (382)
T ss_pred EecCCCCCCCHHHHHHhcc---cCCeEEEEEcccCCCcccc-CHHHHHHHHHHcCCEEEEechhhcCCCcc-CccccCCC
Confidence 9998889999999999997 78899999998 5799998 89999999999999999999986443322 45578999
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
++++|+||++ |.||+|++++++... +.+.+.|.... ...+.++.++. +. .++...+..+ .
T Consensus 195 ~~~~s~~K~~------gp~G~g~l~vr~~~~--~~p~~~g~~~~---~~~~~gt~~~~----~~----~al~~al~~~-~ 254 (382)
T TIGR03403 195 FLSFSAHKFH------GPKGVGGLYIRKGVE--LTPLFHGGEHM---GGRRSGTLNVP----YI----VAMGEAMRLA-N 254 (382)
T ss_pred EEEEcchhhC------CCCceEEEEECCCCC--CCCcccCCCCC---CCcccCCcChH----HH----HHHHHHHHHH-H
Confidence 9999999976 446899999987642 11222221100 01112222221 11 1112333333 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCC-ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC---CC-C-
Q 001989 866 KGLTEASKIAILNANYMAKRLEKHYPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT---MS-W- 939 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~-~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~---~~-~- 939 (985)
+.+....++....++++.++|++...+.+.++.. ...+.+.+.++ +++..++.+.|.++||.++. |. .
T Consensus 255 ~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~L~~~gI~v~~g~~c~~~~ 328 (382)
T TIGR03403 255 EYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIK------GVEGEAMLWDLNKAGIAASTGSACASED 328 (382)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeC------CCCHHHHHHhhccCCEEEEchhccCCCC
Confidence 3455666777888899999997633332222211 11122345554 56788999999999999763 21 0
Q ss_pred --C-------------CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 940 --P-------------VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 940 --p-------------~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+ ..+.+|+|++.++|++|||+ +++.|++++++++.
T Consensus 329 ~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~--~~~~l~~~~~~~~~ 378 (382)
T TIGR03403 329 LEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDY--TIEVFKKAVQRLRA 378 (382)
T ss_pred CCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHH--HHHHHHHHHHHHHh
Confidence 0 12679999999999999999 88999999888764
No 68
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.90 E-value=5e-22 Score=233.68 Aligned_cols=302 Identities=19% Similarity=0.186 Sum_probs=202.2
Q ss_pred HHHHHH-HHHHHHHHhCCCccc----eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHH-------
Q 001989 631 QEMFNN-LGEWLCTITGFDSFS----LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA------- 698 (985)
Q Consensus 631 ~~~~~e-~~~~la~l~G~~~~~----~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~------- 698 (985)
.+.+++ .++.++++||.+... +.+.||++++.+++.++. +++++||+++..|+.+...+.
T Consensus 78 ~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al~--------~~gd~Ii~~~~ehg~~l~~~~~l~~~~~ 149 (452)
T PTZ00094 78 VDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTALL--------QPHDRIMGLDLPSGGHLTHGFYTAKKKV 149 (452)
T ss_pred HHHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHhc--------CCCCEEEecccccCCccccccccccccc
Confidence 345553 778999999987643 344678877755444431 367899999989998765421
Q ss_pred ---HCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccC
Q 001989 699 ---MCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG 775 (985)
Q Consensus 699 ---~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~ 775 (985)
..++++..++++.+|.+|+++|++++++. ++++|++++ +.+|... |+++|+++||++|++++||++|..++.+
T Consensus 150 ~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~--~~~lvi~~~-s~~g~~~-di~~I~~i~~~~ga~l~vDaaq~~G~i~ 225 (452)
T PTZ00094 150 SATSIYFESLPYQVNEKGLIDYDKLEELAKAF--RPKLIIAGA-SAYPRDI-DYKRFREICDSVGAYLMADIAHTSGLVA 225 (452)
T ss_pred ccceeeeeeeecccCCCCCcCHHHHHHHHHHh--CCCEEEEeC-CCCCCcc-CHHHHHHHHHHcCCEEEEeccchhcccc
Confidence 12245666777778999999999999742 344555544 3588888 9999999999999999999999766653
Q ss_pred CC---CCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 776 LT---SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 776 l~---~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
.. .+. .++|++++|+|||| +||.+|++++++++.+.+.... .. ...+...+++ +...
T Consensus 226 ~~~~~~~~-~~~D~l~~S~hK~l------~GP~Gg~l~~~~~~~~~l~~~~-~~----------~~~p~~~G~~--~~~~ 285 (452)
T PTZ00094 226 AGVLPSPF-PYADVVTTTTHKSL------RGPRSGLIFYRKKVKPDIENKI-NE----------AVFPGLQGGP--HNHQ 285 (452)
T ss_pred CCCCCCCC-CCCcEEEcCCccCC------CCCCceEEEEecccchHHHHhh-cc----------ccCCCCCCCc--hHHH
Confidence 31 122 37999999999998 4675688888765443221110 00 0000000110 1112
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~G 931 (985)
+++..+.+..+...++.++.++..+++++|+++|++ ++++..++. . .+..++.+.. .+.+..++.+.|.++|
T Consensus 286 iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~g~~v~~~~~-~--~~~~~v~~~~----~~~~~~~~~~~L~~~g 358 (452)
T PTZ00094 286 IAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKRGYDLVTGGT-D--NHLVLVDLRP----FGITGSKMEKLLDAVN 358 (452)
T ss_pred HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhCCcEEecCCC-C--CceEeecCCc----CCCCHHHHHHHHHHCC
Confidence 222334556664556777788899999999999976 676653222 1 1334555541 3567889999998899
Q ss_pred CccCCCCCC------CCCEEEEeccCCCC----HHHHHHHHccCChhHHHHh
Q 001989 932 FHGPTMSWP------VPGTLMIEPTESES----KSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 932 i~~~~~~~p------~~~~lris~t~~~t----~eeId~~~~~~~l~~~~~~ 973 (985)
|.++...-| .++++|++++.++| ++||++ +++.|++++..
T Consensus 359 I~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~--l~~~l~~~~~~ 408 (452)
T PTZ00094 359 ISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKF--VADFLDRAVKL 408 (452)
T ss_pred cEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHH--HHHHHHHHHHH
Confidence 998532111 24799999988887 999999 77888887764
No 69
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=99.90 E-value=3.3e-22 Score=229.84 Aligned_cols=304 Identities=17% Similarity=0.178 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH-----------------------HHhcCCCCCCEEEEc
Q 001989 630 YQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY-----------------------HKARGDHHRNVCIIP 686 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~-----------------------~~~~g~~~~~~IIv~ 686 (985)
..++...+.+...++||.+.+++++.||++|+.++++++..- -+-|..-.+|+|+..
T Consensus 93 ~d~ie~l~~~ra~~lf~a~~anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l 172 (493)
T PRK13580 93 VDTVEWEAAEHAKELFGAEHAYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGM 172 (493)
T ss_pred HHHHHHHHHHHHHHHhCCCcccccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEee
Confidence 444555566778899999999999999999998888877531 000000026889987
Q ss_pred CCCCcccHH---HHHHCC--cEEEEEcCCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcC
Q 001989 687 VSAHGTNPA---TAAMCG--MKIVSVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNG 760 (985)
Q Consensus 687 ~~~Hg~~~~---~a~~~G--~~vv~v~~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~g 760 (985)
+..||-|.. .....| ++++.+++++ +|.+|++++++.+. ++++.|++++.+.++... |+++|+++|+++|
T Consensus 173 ~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~---~~~plvii~g~S~~~~~~-dl~~i~eia~~~g 248 (493)
T PRK13580 173 SLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLLDYDEIAALAR---EFKPLILVAGYSAYPRRV-NFAKLREIADEVG 248 (493)
T ss_pred cCCCCCeeecCcccchhhheeeeEecccCcccCccCHHHHHHHHh---hcCCEEEEeCccccCCCc-CHHHHHHHHHHcC
Confidence 777765421 122233 5777778874 58999999999998 677778888765445555 8999999999999
Q ss_pred CEEEEEccccccccCCC------CCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCC---CCccccCCCCC
Q 001989 761 GQVYMDGANMNAQVGLT------SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP---SHPVVSTGGIP 831 (985)
Q Consensus 761 alliVD~a~~~~~~~l~------~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp---~~~~g~~~~~~ 831 (985)
++++||+||..++.+.. .| ..++||+++++|||| +||.+|++++++++.+++. +.++|
T Consensus 249 A~L~VD~AH~~Gligg~~~~~~~~~-~~~~D~vtgT~hKaL------~GP~GG~I~~~~~l~~~L~~a~P~i~g------ 315 (493)
T PRK13580 249 AVLMVDMAHFAGLVAGKVFTGDEDP-VPHADIVTTTTHKTL------RGPRGGLVLAKKEYADAVDKGCPLVLG------ 315 (493)
T ss_pred CEEEEECchhhceeccccchhhcCC-CCCCcEEEeCChhhc------cCCCeEEEEecHHHHHHHhhCCCcccC------
Confidence 99999999987664421 12 236899999999998 4687799999987766551 11111
Q ss_pred CCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEec
Q 001989 832 APEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLR 910 (985)
Q Consensus 832 ~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~ 910 (985)
+.. .+..++.+.+ +..+....++++.++..+|+++|++.|.+ |+.+...+ ...|.+.+.+.
T Consensus 316 ---------g~l-----~p~iAA~avA-l~e~~~~ef~~y~~~l~~Na~~La~~L~~~G~~vv~gg---TdshIV~V~lg 377 (493)
T PRK13580 316 ---------GPL-----PHVMAAKAVA-LAEARTPEFQKYAQQVVDNARALAEGFLKRGARLVTGG---TDNHLVLIDVT 377 (493)
T ss_pred ---------CCc-----cHHHHHHHHH-HHHHhCccHHHHHHHHHHHHHHHHHHHHhcCCCccCCC---CCCCEEEEEeC
Confidence 111 1122222333 33333234466788999999999999987 88775322 23456667765
Q ss_pred CccccCCCCHHHHHHHHHHCCCccCCCCCC-C------CCEEEEeccC----CCCHHHHHHHHccCChhHHHHhh
Q 001989 911 GLKNTAGIEPEDVAKRLMDYGFHGPTMSWP-V------PGTLMIEPTE----SESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 911 ~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p-~------~~~lris~t~----~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
. .+.....+.+.|.+.||.++....| + ...|||+++. .++++||++ +++.|.+++...
T Consensus 378 ~----~~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~--iad~l~~~l~~~ 446 (493)
T PRK13580 378 S----FGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDE--VAELIVKVLSNT 446 (493)
T ss_pred C----HHHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHH--HHHHHHHHHHhh
Confidence 2 1223457778999999998765554 1 4679999998 456999999 778888877654
No 70
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=99.90 E-value=1.1e-21 Score=218.65 Aligned_cols=325 Identities=18% Similarity=0.228 Sum_probs=237.8
Q ss_pred ecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCc-ceeeccchHHHHHHHHHHh
Q 001989 170 FIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMS-NASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 170 ~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~-~~sl~~~~ta~~ea~~~a~ 248 (985)
.+..| |.-+|+.|.++ ..++-. +-+.|+ -...+.+.++.+-.+++.+-. -+.+..+||.++||++.++
T Consensus 8 Ll~PG--P~~v~~~V~~a-m~~~~~----~h~s~~----F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl 76 (383)
T COG0075 8 LLTPG--PVPVPPRVLLA-MARPMV----GHRSPD----FVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASL 76 (383)
T ss_pred eeeCC--CCCCCHHHHHH-hcCCCC----CCCCHH----HHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhc
Confidence 45666 55688888743 444421 123333 235566777888899998743 3445588999999988764
Q ss_pred hhhcCCCCEEEE-cCCCChhHHHHHHHhhcCCCeEEEEeC--------chhhhc-cC--CCEeEEEEEcC-CCCeeeccH
Q 001989 249 NIQKGKKKTFII-ASNCHPQTIDICITRADGFDIKVVVSD--------LKDIDY-KS--GDVCGVLVQYP-GTEGEVLDY 315 (985)
Q Consensus 249 ~~~~~~g~~Vlv-~~~~H~s~~~~~~~~a~~~gi~v~~v~--------~~~l~~-l~--~~t~~V~v~~p-n~~G~v~di 315 (985)
- .+||+|++ ..+.|.....-+ ++.+|.+++.++ ++++++ ++ ++.++|.++|. +++|.++|+
T Consensus 77 ~---~pgdkVLv~~nG~FG~R~~~i---a~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl 150 (383)
T COG0075 77 V---EPGDKVLVVVNGKFGERFAEI---AERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPL 150 (383)
T ss_pred c---CCCCeEEEEeCChHHHHHHHH---HHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcH
Confidence 2 28899865 557886555444 456787777764 356776 54 67888988876 889999999
Q ss_pred HHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeec
Q 001989 316 GDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSID 393 (985)
Q Consensus 316 ~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d 393 (985)
++|+++|+++|++++||+ ..|+|.. ..+.+||+|+++.++ |.|+.| ||+|++.++++.++.+..+
T Consensus 151 ~~I~~~~k~~g~l~iVDa-VsS~Gg~~~~vd~wgiDv~itgSQK~l~~P-----PGla~v~~S~~a~e~~~~~------- 217 (383)
T COG0075 151 KEIAKAAKEHGALLIVDA-VSSLGGEPLKVDEWGIDVAITGSQKALGAP-----PGLAFVAVSERALEAIEER------- 217 (383)
T ss_pred HHHHHHHHHcCCEEEEEe-cccCCCcccchhhcCccEEEecCchhccCC-----CccceeEECHHHHHHHhcC-------
Confidence 999999999999999965 4577755 467899999999999 778766 8899999999988877322
Q ss_pred CCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-
Q 001989 394 SSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL- 472 (985)
Q Consensus 394 ~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~- 472 (985)
..++|+|+|..-.+.......|+.....+.++++..++ ..+..||++++.+|+.+++++++++++++| ++++.+
T Consensus 218 --~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al--~~i~~EGle~r~~RH~~~~~a~r~~~~alG-l~~~~~~ 292 (383)
T COG0075 218 --KHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREAL--DLILEEGLEARIARHRRLAEALRAGLEALG-LELFADP 292 (383)
T ss_pred --CCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHcC-CccccCc
Confidence 12258998865444443335666666668899998887 777789999999999999999999999998 998852
Q ss_pred -CCcceE-EEecCC---HHHHHHHHHH-cCceeee----ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 473 -PFFDTV-KVKCAD---AHAIASAAYK-IEMNLRV----VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 473 -~~~~~~-~~~~~~---~~~v~~~L~~-~GI~~~~----~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
...+++ ++..|. ..++...|.+ +|+.+.. +.+..+||..+=.-+.+|+...+.+|+.
T Consensus 293 ~~~s~tvta~~~P~g~~~~~~~~~~~~~~g~~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~ 359 (383)
T COG0075 293 ERRSPTVTAIKVPEGVDDKKVRRALLKEYGVEIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEA 359 (383)
T ss_pred ccCCCceEEEECCCCCCcHHHHHHHHHhCCEEecccccccCccEEEEecCccCCHHHHHHHHHHHHH
Confidence 223344 355654 3445555554 5887743 2356899998888899999999999874
No 71
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=99.90 E-value=1.5e-21 Score=224.83 Aligned_cols=307 Identities=16% Similarity=0.125 Sum_probs=206.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCcc-c-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCc
Q 001989 629 GYQEMFNNLGEWLCTITGFDSF-S-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGM 702 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~-~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~ 702 (985)
+..+.+.++++++++++|.+.. . ++.+++++++..+ ++.+ .+++++|+++...|+++.. .++..|+
T Consensus 41 ~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~---~~~~-----~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~ 112 (376)
T TIGR01977 41 RASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIA---LKGL-----LKEGDHVITTPMEHNSVARPLECLKEQIGV 112 (376)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHH---HHhc-----cCCCCEEEECcchhhHHHHHHHHHHHHcCc
Confidence 3446678899999999998653 3 4445566665433 3322 1367899998887876543 2455699
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCc
Q 001989 703 KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY 781 (985)
Q Consensus 703 ~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~ 781 (985)
+++.++.++++.+|+++|+++++ +++++|++++|+ .+|.+. |+++|.++||++|++++||++|..+...+ ....
T Consensus 113 ~~~~v~~~~~~~~d~~~l~~~~~---~~~~~v~~~~~~n~tG~~~-~~~~i~~l~~~~~~~livD~a~~~g~~~~-~~~~ 187 (376)
T TIGR01977 113 EITIVKCDNEGLISPERIKRAIK---TNTKLIVVSHASNVTGTIL-PIEEIGELAQENGIFFILDAAQTAGVIPI-DMTE 187 (376)
T ss_pred EEEEEecCCCCCcCHHHHHHhcC---CCCeEEEEECCCCCccccC-CHHHHHHHHHHcCCEEEEEhhhccCccCC-Cchh
Confidence 99999998888999999999997 789999999985 699998 89999999999999999999996544333 3356
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEEEccccc-CcCCCCcccc---CCCC---CCCCCCCCCCCCCCcchhhhHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLA-PFLPSHPVVS---TGGI---PAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~-~~lp~~~~g~---~~~~---~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
+++|++++++|||++.| +|.|+++++++.. ..+.....+. ..+. ...+.+.++.++ ..+.
T Consensus 188 ~~~D~~~~s~~K~l~~p-----~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~--------~~~~ 254 (376)
T TIGR01977 188 LAIDMLAFTGHKGLLGP-----QGTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNT--------PGIA 254 (376)
T ss_pred cCCCEEEecccccccCC-----CCceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCH--------HHHH
Confidence 78999999999998522 3678888876531 1111100000 0000 000111122111 1223
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC-C
Q 001989 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY-G 931 (985)
Q Consensus 855 ~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~-G 931 (985)
+..+.++.+...|+..+.++..++++++.++|++ ++.+..+.+.......+.+.++ +.+..++.+.|.++ |
T Consensus 255 a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~~~~~L~~~~g 328 (376)
T TIGR01977 255 GLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVE------GIDSEEVADILDEKFD 328 (376)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEEC------CCCHHHHHHHHhccCC
Confidence 3345667777778888888899999999999986 3333221111111223344443 46788999999987 8
Q ss_pred CccCC---CC--------CCCCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 932 FHGPT---MS--------WPVPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 932 i~~~~---~~--------~p~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
|.+.. +. ....+.+|++++.++|.+|||+ +++.|++
T Consensus 329 i~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~--~~~~l~~ 375 (376)
T TIGR01977 329 IATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEK--LLEALSE 375 (376)
T ss_pred EEEEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHH--HHHHHhh
Confidence 88642 11 0124789999999999999999 6666654
No 72
>PRK02948 cysteine desulfurase; Provisional
Probab=99.90 E-value=2.9e-21 Score=222.90 Aligned_cols=292 Identities=14% Similarity=0.092 Sum_probs=210.9
Q ss_pred HhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhh-cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001989 205 IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ-KGKKKTFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 205 ~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~-~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v 283 (985)
....+...+.++++.+|+++|.++.++.+++|+|.++..++.++.-. .+++++|+++..+||++...++. ++..|+++
T Consensus 37 ~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~-~~~~g~~v 115 (381)
T PRK02948 37 IGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQS-LESQGYTV 115 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhccCCCCEEEECCcccHHHHHHHHH-HHhCCCEE
Confidence 33445577889999999999998888988899888776655443210 13679999999999999998865 45578888
Q ss_pred EEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEE
Q 001989 284 VVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIV 352 (985)
Q Consensus 284 ~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~ 352 (985)
+.++. +++++ +.+++++|++++| |.+|.+.|+++|+++||++|++++|| ..+++|.. ....++|+|++
T Consensus 116 ~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD-~~~~~g~~~~~~~~~~~d~~ 194 (381)
T PRK02948 116 TEIPVDKSGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSD-CVQTFGKLPIDVFEMGIDSL 194 (381)
T ss_pred EEEeeCCCCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEE-ChhhccccccCcccCCCCEE
Confidence 88764 34555 6778999999998 68999999999999999999999996 34566543 23467999999
Q ss_pred EecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 353 VGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 353 v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
+.+++|+. |.||+|++++++++. +.....| . .+..+.+.+|.|+ .+..++.++
T Consensus 195 ~~s~~K~~-----gp~G~G~l~~~~~~~--~~~~~~~-------~----------~~~~~~~~~t~~~---~~~~a~~~a 247 (381)
T PRK02948 195 SVSAHKIY-----GPKGVGAVYINPQVR--WKPVFPG-------T----------THEKGFRPGTVNV---PGIAAFLTA 247 (381)
T ss_pred EecHHhcC-----CCCcEEEEEEcCCCC--CCCcccC-------C----------CCCCCcCCCCccH---HHHHHHHHH
Confidence 99984453 335689999987641 1110001 0 0112235677776 345555555
Q ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc--CCC--Cc-ceEEEecCC--HHHHHHHHHHcCceeeee---
Q 001989 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ--GLP--FF-DTVKVKCAD--AHAIASAAYKIEMNLRVV--- 502 (985)
Q Consensus 433 ~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~--~~~--~~-~~~~~~~~~--~~~v~~~L~~~GI~~~~~--- 502 (985)
+ ..+ .++++++.+++.++.++++++|+++| +++. +.+ .. ..+.+..++ +.++...|.++||.++..
T Consensus 248 l--~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~-~~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c 323 (381)
T PRK02948 248 A--ENI-LKNMQEESLRFKELRSYFLEQIQTLP-LPIEVEGHSTSCLPHIIGVTIKGIEGQYTMLECNRRGIAISTGSAC 323 (381)
T ss_pred H--HHH-HHHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEeCCCccCcCCEEEEEeCCCCHHHHHHhcccCCEEEEchHhc
Confidence 4 222 23678899999999999999999987 6543 211 12 234455554 778888898899988631
Q ss_pred --------------------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 --------------------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 --------------------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+.+|+|++.+||++|+|+++++|..
T Consensus 324 ~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~ 370 (381)
T PRK02948 324 QVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALET 370 (381)
T ss_pred CCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 036899999999999999999999974
No 73
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=99.90 E-value=7.1e-21 Score=224.57 Aligned_cols=375 Identities=14% Similarity=0.161 Sum_probs=232.8
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCccc---cccccccccccccCCCCchhhhhhHHHHHHH
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATT---EMMPVTWPSFANIHPFAPADQAQGYQEMFNN 636 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~---~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e 636 (985)
.+| +.+.+..+.++.+.+.--.+........|+|+-+..+++.. ..+.. ..|-+.+.- +.++...++..+
T Consensus 61 ~~p--~~~~~~~~~~~~~~~~~~~~~~~~~hP~f~g~~~~~~p~~~~~l~~l~~----~lN~n~~~~-~~spa~t~lE~~ 133 (522)
T TIGR03799 61 EIP--EQPTFVSEHTQFLLDKLVAHSVHTASPSFIGHMTSALPYFMLPLSKLMV----ALNQNLVKI-ETSKAFTPLERQ 133 (522)
T ss_pred CCC--CCCCChHHHHHHHHHHHHcCCCCCCCCCeEEeccCCCchHHHHHHHHHH----HhcCCccee-ecCcchHHHHHH
Confidence 456 56677778888855443333333345677885333222211 11111 112122222 557788899999
Q ss_pred HHHHHHHHhCCC------------c-c-ceecCcHHHHHHHHHHHHHHHHHhc-----CC-------------CCCCEEE
Q 001989 637 LGEWLCTITGFD------------S-F-SLQPNAGAAGEYAGLMVIRAYHKAR-----GD-------------HHRNVCI 684 (985)
Q Consensus 637 ~~~~la~l~G~~------------~-~-~~~~~sGa~a~~a~l~air~~~~~~-----g~-------------~~~~~II 684 (985)
+..|++++++.. . . .++.++|++|++.++.++|...... +. .++..|+
T Consensus 134 v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~ 213 (522)
T TIGR03799 134 VLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAIL 213 (522)
T ss_pred HHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEE
Confidence 999999998521 1 1 2456678888888888888643110 00 1245788
Q ss_pred EcCCCCcccHHHHHHCCc---EEEEEcCCCCCCCCHHHHHHHHHhc-CCC--EEEEEEEcCC-CccccccCHHHHHHHHH
Q 001989 685 IPVSAHGTNPATAAMCGM---KIVSVGTDAKGNINIEELRKAAEAN-RDN--LSTLMVTYPS-THGVYEEGIDEICKIIH 757 (985)
Q Consensus 685 v~~~~Hg~~~~~a~~~G~---~vv~v~~d~~g~iD~e~L~~~i~~~-~~~--t~~Vvv~~pn-~~G~i~~di~eI~~la~ 757 (985)
+++.+|.++.+++...|+ +++.||+|++|++|+++|+++|++. +.+ +.+|+.+..+ .+|.++ |+++|+++|+
T Consensus 214 ~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiD-pl~eIa~i~~ 292 (522)
T TIGR03799 214 VSERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNID-PLDEMADIAQ 292 (522)
T ss_pred ECCCchHHHHHHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcC-CHHHHHHHHH
Confidence 899999999999988888 8999999999999999999999631 123 3444444544 599999 8999999999
Q ss_pred HcCCEEEEEccccccccCCCC------CCccCCcEEEeCCcccccccCCCCCCceEEEEEcc-cccCcCCC---Ccc-cc
Q 001989 758 DNGGQVYMDGANMNAQVGLTS------PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPS---HPV-VS 826 (985)
Q Consensus 758 ~~galliVD~a~~~~~~~l~~------pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~---~~~-g~ 826 (985)
++|+|+|||+|+..+.. +.. .+-.++|++++++|||+..|+ |+|++++++ .+.+.+.. ++. ..
T Consensus 293 ~~g~~lHVDaA~gg~~~-~~~~~r~~l~gle~aDSit~d~HK~l~~P~-----g~G~llvr~~~~~~~~~~~~~Yl~~~~ 366 (522)
T TIGR03799 293 ELGCHFHVDAAWGGATL-LSNTYRHLLKGIERADSVTIDAHKQLYVPM-----GAGMVLFKDPALMSAIEHHAEYILRKG 366 (522)
T ss_pred HcCCeEEEEchhhhHHH-hCHHHHHHhcCchhCCEEEEChhhcCCcCc-----ccEEEEEeCHHHHHHhccCcchhcCCC
Confidence 99999999999842221 111 122479999999999986443 567888875 33222211 110 00
Q ss_pred CCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeE
Q 001989 827 TGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHE 904 (985)
Q Consensus 827 ~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~ 904 (985)
..+...+ .+..+.. ..+...|+.|+.+|.+|++++.++.+++++|+.+.|++ +++++.+ +..+.
T Consensus 367 ~~d~~~~-------~legsR~---~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~----p~l~i 432 (522)
T TIGR03799 367 SKDLGSH-------TLEGSRP---GMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTE----PELCL 432 (522)
T ss_pred CCccccc-------eeecCcc---hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecC----CCccE
Confidence 0010000 1111111 12245799999999999999999999999999999976 4555432 23444
Q ss_pred EEEEecC--cccc-----------CC--C--CHHHHHHHHHHCCCc-cCC--CC---CCC--CCEEEEecc-CCCCHHHH
Q 001989 905 FIVDLRG--LKNT-----------AG--I--EPEDVAKRLMDYGFH-GPT--MS---WPV--PGTLMIEPT-ESESKSWT 958 (985)
Q Consensus 905 ~iv~~~~--~~~~-----------~g--~--~~~~v~~~L~~~Gi~-~~~--~~---~p~--~~~lris~t-~~~t~eeI 958 (985)
+++++.+ .... .+ . -...+.+++.+.|.. ++. +. |.- ...+|+++. ..+|+++|
T Consensus 433 v~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i 512 (522)
T TIGR03799 433 LTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEIL 512 (522)
T ss_pred EEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecCCCCCHHHH
Confidence 5555431 0000 00 0 013566677777765 321 11 110 146899885 67889999
Q ss_pred HHHH
Q 001989 959 GIVM 962 (985)
Q Consensus 959 d~~~ 962 (985)
+.++
T Consensus 513 ~~~l 516 (522)
T TIGR03799 513 QDIL 516 (522)
T ss_pred HHHH
Confidence 9833
No 74
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=99.90 E-value=3.2e-22 Score=227.62 Aligned_cols=292 Identities=18% Similarity=0.204 Sum_probs=204.9
Q ss_pred hhhHHHHHHHHHHHHHHHhCCC-c--cceecCcHHHHHHHHHHHHHHHHHh----c--CCCCCCEEEEcCCCCcccHHHH
Q 001989 627 AQGYQEMFNNLGEWLCTITGFD-S--FSLQPNAGAAGEYAGLMVIRAYHKA----R--GDHHRNVCIIPVSAHGTNPATA 697 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~-~--~~~~~~sGa~a~~a~l~air~~~~~----~--g~~~~~~IIv~~~~Hg~~~~~a 697 (985)
+.+..++.+++.+++++++|.+ . ..+++++|++|+..++.+++..... . +..++++|++++.+|.++...+
T Consensus 33 ~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~ 112 (345)
T cd06450 33 SPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAA 112 (345)
T ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHH
Confidence 5678888999999999999986 2 2456677888876666655432100 0 0012347888998998888888
Q ss_pred HHCCcEEEEEcCCCCCCCCHHHHHHHHHh---cCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccc
Q 001989 698 AMCGMKIVSVGTDAKGNINIEELRKAAEA---NRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 698 ~~~G~~vv~v~~d~~g~iD~e~L~~~i~~---~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~ 773 (985)
...|.+++.+|+++++.+|+++|++++++ ...++++|++++|+ .+|.++ |+++|+++|+++|+++|+|+++..+.
T Consensus 113 ~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~-~~~~i~~~~~~~~~~l~vD~a~~~~~ 191 (345)
T cd06450 113 AYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAID-PLEEIADLAEKYDLWLHVDAAYGGFL 191 (345)
T ss_pred HHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCC-CHHHHHHHHHHhCCeEEEechhhHHH
Confidence 88899999999988889999999999973 11178888888885 699998 89999999999999999999985433
Q ss_pred cCCCCC-----CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 774 VGLTSP-----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 774 ~~l~~p-----g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
...... ...++|++++++||+++.| +|+|+++++
T Consensus 192 ~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p-----~g~g~~~~~------------------------------------ 230 (345)
T cd06450 192 LPFPEPRHLDFGIERVDSISVDPHKYGLVP-----LGCSAVLVR------------------------------------ 230 (345)
T ss_pred hhChhhHHHhcCccccCEEEEchhHhhCCC-----cchHHHHHH------------------------------------
Confidence 221111 1136899999999998533 355555433
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~ 928 (985)
+...|+.+..++.+|++++.++..++++++.+.|++...+...++ +..+.+.+.+++- ...+.+..++.++|.
T Consensus 231 ----~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~~~~iv~f~~~~~-~~~~~~~~~i~~~L~ 303 (345)
T cd06450 231 ----ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGE--PNLSLVCFRLKPS-VKLDELNYDLSDRLN 303 (345)
T ss_pred ----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC--CceeEEEEEECCc-chhhHHHHHHHHHHH
Confidence 122456778888999999999999999999999986322211121 1233344554310 000245678999999
Q ss_pred HCCC-ccCCCCCCCCCEEEEeccCC-CCHHHHHHHHccCChhH
Q 001989 929 DYGF-HGPTMSWPVPGTLMIEPTES-ESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 929 ~~Gi-~~~~~~~p~~~~lris~t~~-~t~eeId~~~~~~~l~~ 969 (985)
++|+ +++...++.++.+|++++.. +|++|||+ +++.|++
T Consensus 304 ~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~--l~~~l~~ 344 (345)
T cd06450 304 ERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADA--LLEDIER 344 (345)
T ss_pred hcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHH--HHHHHHh
Confidence 9964 44433333357899999986 59999999 6666643
No 75
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=99.89 E-value=3.5e-22 Score=224.78 Aligned_cols=316 Identities=18% Similarity=0.214 Sum_probs=232.9
Q ss_pred CCccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHH
Q 001989 164 NKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEA 243 (985)
Q Consensus 164 n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea 243 (985)
|.+.++|||...+|..+.+++. .+.. |.+..+ .++...|+.+.+.++++.+|+++|.+. +.+|.+|-.+..+
T Consensus 43 nf~SNdYLGLa~~~~~~~a~~~-~~~~---~g~g~~--gsR~i~G~~~~h~~LE~~lA~f~g~e~--al~f~SGy~AN~~ 114 (388)
T COG0156 43 NFCSNDYLGLASHPELIEAAKA-AIRR---YGVGAG--GSRLISGTSDLHVELEEELADFLGAEA--ALLFSSGFVANLG 114 (388)
T ss_pred eeeccCcccccCCHHHHHHHHH-HHHH---hCCCCC--CcCcccCCcHHHHHHHHHHHHHhCCCc--EEEEcccchhHHH
Confidence 4467889999998877777764 4333 223222 667889999999999999999999987 7778887776667
Q ss_pred HHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchhhhc-cCC---C--EeEEEEEcC--CCCeeeccH
Q 001989 244 MAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDY-KSG---D--VCGVLVQYP--GTEGEVLDY 315 (985)
Q Consensus 244 ~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~~-l~~---~--t~~V~v~~p--n~~G~v~di 315 (985)
++-++. +++|.|+.++.+|.|.++.++ +++..-+.+.+.|+++|++ +.+ . .+.++|+.. ++.|.+.|+
T Consensus 115 ~i~~l~---~~~dli~~D~lnHASiidG~r-ls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiApL 190 (388)
T COG0156 115 LLSALL---KKGDLIFSDELNHASIIDGIR-LSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAPL 190 (388)
T ss_pred HHHHhc---CCCcEEEEechhhhhHHHHHH-hCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCCH
Confidence 666552 378999999999999999997 3555556666778888887 532 1 245566654 899999999
Q ss_pred HHHHHHHHhCCcEEEEEecCccccCCCCCC-----ccc-----ceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCC
Q 001989 316 GDFIKNAHANGVKVVMATDLLALTILKPPG-----ELG-----ADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMP 384 (985)
Q Consensus 316 ~~I~~~a~~~galliV~a~~~~lg~l~~~~-----~~G-----aDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp 384 (985)
++|++++++||++++| ++.++.|++.+-| .+| +||++++. |.||. .| ||+.++..+.+.+
T Consensus 191 ~~l~~L~~ky~a~L~V-DEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs---~G----g~v~g~~~~~d~L- 261 (388)
T COG0156 191 PELVELAEKYGALLYV-DEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGS---SG----GYIAGSAALIDYL- 261 (388)
T ss_pred HHHHHHHHHhCcEEEE-EccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcc---cC----ceeeCcHHHHHHH-
Confidence 9999999999999999 4678999887543 233 38999997 99973 44 5888888777655
Q ss_pred CceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC
Q 001989 385 GRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL 464 (985)
Q Consensus 385 ~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~ 464 (985)
|.++.+.|+|++..++.+++...++--.+-..+..++..+++.+++..++..
T Consensus 262 ----------------------------~~~ar~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~~ 313 (388)
T COG0156 262 ----------------------------RNRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKAL 313 (388)
T ss_pred ----------------------------HHhCCceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Confidence 2235566667666666655553222212233567788899999999777776
Q ss_pred CCeEEcC-CCCcceEEEecCC-HHHHHHHHHHcCceeeeec-------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 465 GTVEVQG-LPFFDTVKVKCAD-AHAIASAAYKIEMNLRVVD-------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 465 g~~~~~~-~~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~~~-------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
| +.+.. ...+-++.+..+. +.++...|.++||++..+. ...+|+|+|..+|++|||+++++|.+
T Consensus 314 ~-~~~~~s~s~I~pv~~gd~~~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~ 386 (388)
T COG0156 314 G-LVLLPSESPIIPVILGDEERALEASRALLEEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSE 386 (388)
T ss_pred C-CccCCCCCCeeeeEeCCHHHHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHh
Confidence 7 66532 2333345555545 8899999999999885441 26799999999999999999999874
No 76
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=99.89 E-value=1.4e-20 Score=216.55 Aligned_cols=343 Identities=15% Similarity=0.192 Sum_probs=225.0
Q ss_pred CHHHHHHHHHHHhcCCCcc---ceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcC
Q 001989 149 TESQMIEHMQKLASMNKVY---KSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTG 225 (985)
Q Consensus 149 se~e~~~~~~~l~~~n~~~---~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g 225 (985)
||.|++..++++-+....+ ..++..+.+| .|.+.. .+.. ++..+ ...+....|..+...++++.+|+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-a~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~la~~~g 73 (373)
T TIGR03812 1 SEEEVLEELKEYRSEDLKYSDGRILGSMCTNP--HPIAVK-AYDM---FIETN-LGDPGLFPGTKKIEEEVVGSLGNLLH 73 (373)
T ss_pred CHHHHHHHHHHHHhcCCCCCCCcEEEEEeCCc--hHHHHH-HHHH---HhhcC-CCCcccCccHHHHHHHHHHHHHHHhC
Confidence 6899999999985544332 2234444433 333222 2111 11111 11122234566778889999999999
Q ss_pred CCCcceeeccchHHHHHHHHHHhhh---hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-
Q 001989 226 LPMSNASLLDEGTAAAEAMAMCNNI---QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY- 293 (985)
Q Consensus 226 ~~~~~~sl~~~~ta~~ea~~~a~~~---~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~- 293 (985)
++.+++.++.|+|.+...++.+... ..++|++|++++..|+++...++ ..|++++.++. +++++
T Consensus 74 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~----~~G~~~~~v~~~~~~~~d~~~l~~~ 149 (373)
T TIGR03812 74 LPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFEKAAE----MLGLELRYAPLDEDYTVDVKDVEDL 149 (373)
T ss_pred CCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHHHHHH----HcCCeEEEEeeCCCCCcCHHHHHHH
Confidence 9988888888988766555443321 11366899999999999877654 45888877753 35555
Q ss_pred cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-------C----CCCcccceEEEecCccccc
Q 001989 294 KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-------K----PPGELGADIVVGSAQRFGV 361 (985)
Q Consensus 294 l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-------~----~~~~~GaDi~v~s~k~lg~ 361 (985)
+++++.++++.+| |++|.+.|+++|+++||++|++++||. .++.+.+ . .....|+|.+..++++|+.
T Consensus 150 l~~~~~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~-a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~ 228 (373)
T TIGR03812 150 IDDNTIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDA-AFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGL 228 (373)
T ss_pred HhhCcEEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEc-CchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCC
Confidence 6667755554444 789999999999999999999999953 2222111 0 1123589999999855542
Q ss_pred -cCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCc
Q 001989 362 -PMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGP 440 (985)
Q Consensus 362 -P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~ 440 (985)
|. |..|+++.++++++.+... .+ |.. . .+ + ....||.|. ....++.++ +.+++.
T Consensus 229 ~~~----~~G~~~~~~~~~~~~l~~~----------~~-~~~-~-~~-~--~~~~gt~~~---~~~~~~~~~--l~~l~~ 283 (373)
T TIGR03812 229 SPI----PAGGILFRSKSYLKYLSVD----------AP-YLT-V-KK-Q--ATITGTRSG---ASAAATYAV--IKYLGR 283 (373)
T ss_pred CcC----CceEEEEeCHHHHhhhccc----------Cc-ccC-C-CC-C--cceEeechh---HHHHHHHHH--HHHhCH
Confidence 32 3345666777777665210 00 100 0 00 0 001244443 223333333 477888
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCCHHHHHHHHHHcCceeeee-cCCeEEEEeccCCCHHH
Q 001989 441 EGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNLRVV-DSNTVTASFDETTTLED 519 (985)
Q Consensus 441 ~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~GI~~~~~-~~~~lris~t~~~t~ed 519 (985)
+|++++.+++.+++++|+++|+++| ++.+..+..+.+.+..++..++.++|.++||.++.. .+..+|+|++.++|++|
T Consensus 284 ~g~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~v~~~~~~~~~v~~~L~~~gi~v~~~~~~~~iRis~~~~~t~ed 362 (373)
T TIGR03812 284 EGYRKIVAECMENTRYLVEELKKIG-FEPVIEPVLNIVAFEVDDPEEVRKKLRDRGWYVSVTRCPKALRIVVMPHVTREH 362 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CeEEcCCCceEEEEEeCCHHHHHHHHHHCCceeccCCCCCEEEEEEECCCCHHH
Confidence 9999999999999999999999997 654433445566677666678999999999998764 35789999999999999
Q ss_pred HHHHHHHHhC
Q 001989 520 VDKLFIVFAG 529 (985)
Q Consensus 520 Id~li~aL~~ 529 (985)
+|+++++|.+
T Consensus 363 id~l~~~L~~ 372 (373)
T TIGR03812 363 IEEFLEDLKE 372 (373)
T ss_pred HHHHHHHHhh
Confidence 9999999963
No 77
>PLN02409 serine--glyoxylate aminotransaminase
Probab=99.89 E-value=3.1e-21 Score=223.88 Aligned_cols=319 Identities=11% Similarity=0.015 Sum_probs=218.0
Q ss_pred hhHHHHHHHHHHHHHHHhCCCc--cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH--HHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDS--FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP--ATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~--~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~--~~a~~~G~~ 703 (985)
.+..++++++++++++++|.+. ..+++++|++++++++..+ .+++|+||+++..|.... ..++..|++
T Consensus 38 ~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~--------~~~Gd~Vlv~~~~~~~~~~~~~~~~~g~~ 109 (401)
T PLN02409 38 PAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNT--------LSPGDKVVSFRIGQFSLLWIDQMQRLNFD 109 (401)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhc--------CCCCCEEEEeCCCchhHHHHHHHHHcCCc
Confidence 4567788899999999999875 3466677776664443321 147899999887665443 335678999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcC-CCEEEEEEEcC-CCccccccCHHHHHHH--HHHcCCEEEEEccccccccCCCCC
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANR-DNLSTLMVTYP-STHGVYEEGIDEICKI--IHDNGGQVYMDGANMNAQVGLTSP 779 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~-~~t~~Vvv~~p-n~~G~i~~di~eI~~l--a~~~galliVD~a~~~~~~~l~~p 779 (985)
++.++.++++.+|+++|+++++... +++++|+++++ |.+|++. |+++|+++ ||++|++++||++|..+... .+.
T Consensus 110 v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~-~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~-id~ 187 (401)
T PLN02409 110 VDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTN-DLAGVRKLLDCAQHPALLLVDGVSSIGALD-FRM 187 (401)
T ss_pred eEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccC-CHHHHHHHHhhhccCcEEEEEcccccCCcc-ccc
Confidence 9999988766789999999998311 27899999987 5799998 89999999 99999999999998644322 234
Q ss_pred CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCC-----CccccCC--CCCCCC-CCCCCCCCCCcchhhhH
Q 001989 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS-----HPVVSTG--GIPAPE-KSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 780 g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~-----~~~g~~~--~~~~~~-~~~~~~~i~s~~~g~~~ 851 (985)
.++++|++++++||||+. +||+|++++++++.+.+.. ..+++.. +....+ ....|+++ .
T Consensus 188 ~~~~~D~~~~s~~K~l~~-----P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~--------~ 254 (401)
T PLN02409 188 DEWGVDVALTGSQKALSL-----PTGLGIVCASPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSI--------Q 254 (401)
T ss_pred cccCccEEEEcCccccCc-----CCCcceeEECHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccH--------H
Confidence 678999999999999963 3589999999776544321 1111100 000000 00011111 1
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-H
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-D 929 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~ 929 (985)
...+..+.+..+..+|+.++.++..++++++++.|++ ++++..+.+.......+.+.++ .+.+..++.+.|. +
T Consensus 255 ~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~~~s~~v~~~~~p-----~~~~~~~l~~~l~~~ 329 (401)
T PLN02409 255 LLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAWGLKLCTKKPEWRSDTVTAVVVP-----EGIDSAEIVKNAWKK 329 (401)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcccceEEEeCC-----CCCCHHHHHHHHHHh
Confidence 1222234455555678888888899999999999986 5555432111111112234443 2577888988875 5
Q ss_pred CCCccCCCCCC-CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 930 YGFHGPTMSWP-VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 930 ~Gi~~~~~~~p-~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+||.+..-..+ -...+||+...+++.+||.+ ++.+|++++..+..
T Consensus 330 ~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~--~~~~~~~~l~~~g~ 375 (401)
T PLN02409 330 YNLSLGLGLNKVAGKVFRIGHLGNVNELQLLG--ALAGVEMVLKDVGY 375 (401)
T ss_pred CCEEEEcCCCcccCCEEEEcCCCCCCHHHHHH--HHHHHHHHHHHcCC
Confidence 69887543333 25789999999999999999 78999998887653
No 78
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=99.89 E-value=6.7e-22 Score=214.28 Aligned_cols=294 Identities=20% Similarity=0.238 Sum_probs=212.3
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH---HHHCC--cEEEEEc
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT---AAMCG--MKIVSVG 708 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~---a~~~G--~~vv~v~ 708 (985)
...+.+...++||++.++++|.||++|+.++++|+. +++|+|+-.+..||.|... ....| ++++.++
T Consensus 74 E~laierak~LFga~~anVQPhSGs~AN~av~~All--------~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~ 145 (413)
T COG0112 74 EELAIERAKKLFGAEYANVQPHSGSQANQAVYLALL--------QPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYG 145 (413)
T ss_pred HHHHHHHHHHHhCCCccccCCCCchHHHHHHHHHHc--------CCCCeEecccCCCCCcccCCCCCCccceeEEeEecc
Confidence 334556788899999999999999999988888764 4899999888888865332 22333 5787888
Q ss_pred CCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccc---cCCCCCCccCC
Q 001989 709 TDA-KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ---VGLTSPGYIGA 784 (985)
Q Consensus 709 ~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~---~~l~~pg~~g~ 784 (985)
+|+ ++.+|.|++++.+.+++| ++|+.....+.-.+ |++++.++|++.|++|++|.||..++ +.+.+|-.+ +
T Consensus 146 vd~et~~IDyD~~~k~a~e~kP--K~ii~G~SaY~r~i--d~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~-A 220 (413)
T COG0112 146 VDPETGLIDYDEVEKLAKEVKP--KLIIAGGSAYSRPI--DFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPH-A 220 (413)
T ss_pred cccccCccCHHHHHHHHHHhCC--CEEEECcccccccc--CHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCc-c
Confidence 885 499999999999987554 45666554455555 79999999999999999999996444 334566666 9
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM 863 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l 863 (985)
|+++.+.|||| .||++|+|.+++ ++...+...+|.+. -+++. ....++.|.++-+.+
T Consensus 221 dvVTtTTHKTl------rGPrGG~Il~~~eel~kkin~aVFPg~---------------qggpl-~HviAakaVa~~Eal 278 (413)
T COG0112 221 DVVTTTTHKTL------RGPRGGIILTNDEELAKKINSAVFPGL---------------QGGPL-MHVIAAKAVAFKEAL 278 (413)
T ss_pred ceEeCCcccCC------CCCCceEEEeccHHHHHHhhhhcCCcc---------------CCChH-HHHHHHHHHHHHHHc
Confidence 99999999998 689999999995 77766654333211 01111 112233444444444
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC--CCC-
Q 001989 864 GSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT--MSW- 939 (985)
Q Consensus 864 g~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~--~~~- 939 (985)
..+++++++++.+|++.|++.|.+ |++++.. +...|.++++++. .+.+..+..+.|.+.||.++. +.|
T Consensus 279 -~p~fk~Ya~qVv~NAkaLAe~l~~~G~~vvsG---gTdnHl~lVDl~~----~~~~Gk~ae~~L~~~~It~NKN~iP~D 350 (413)
T COG0112 279 -EPEFKEYAKQVVKNAKALAEALKERGFKVVSG---GTDNHLVLVDLRS----KGLTGKKAEAALERAGITVNKNAIPFD 350 (413)
T ss_pred -ChhHHHHHHHHHHHHHHHHHHHHHcCCeEecC---CccceEEEEEccc----CCCCHHHHHHHHHHcCEeeccCCCCCC
Confidence 457899999999999999999986 8888653 4567889999872 367889999999999998864 211
Q ss_pred ---C-CCCEEEEeccCC----CCHHHHHHHHccCChhHHHH
Q 001989 940 ---P-VPGTLMIEPTES----ESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 940 ---p-~~~~lris~t~~----~t~eeId~~~~~~~l~~~~~ 972 (985)
| ++..|||-..+. ..++|+.+ ..+.+.+++.
T Consensus 351 ~~~p~~tSGIRiGtpa~TtrG~~e~e~~~--Ia~~I~~vl~ 389 (413)
T COG0112 351 PESPFVTSGIRIGTPAVTTRGFGEAEMEE--IADLIADVLD 389 (413)
T ss_pred CCCCCCCccceeccHHHhhcCCCHHHHHH--HHHHHHHHHh
Confidence 2 457899987654 34566666 4444444443
No 79
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=99.89 E-value=2e-21 Score=221.59 Aligned_cols=317 Identities=18% Similarity=0.229 Sum_probs=204.0
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCcc---ccccccccccccccCCCCchhhhhhHHHHHHH
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNAT---TEMMPVTWPSFANIHPFAPADQAQGYQEMFNN 636 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~---~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e 636 (985)
.+| +.+.+.+++++.+++.........+...++|.-+...+.. .++.. ...|-+.+.. +.++...++..+
T Consensus 11 ~lp--~~~~~~~~vl~~~~~~l~~~~~~~~~P~~~~~~~~~~~~~~i~~~~l~----~~~n~n~~~~-~~~P~~~~~E~~ 83 (373)
T PF00282_consen 11 ELP--EEGESLEEVLKDLREILAPGVTHWHHPRFFGFVPGGPSPASILADLLA----SALNQNGFTW-EASPAATEIERE 83 (373)
T ss_dssp CHH--SSHH-HHHHHHHHHHHTHGCS-TTTSTTBESSSHT--CHHHHHHHHHH----HHHT-BTTST-TTSHHHHHHHHH
T ss_pred ccc--cCCCCHHHHHHHHHHHhhccCCCCCChhHhhhccCCccHHHHHHHHHH----hhhccccccc-ccccccccchHH
Confidence 556 5778899999999887666544444456676422121111 11111 2222222222 556788899999
Q ss_pred HHHHHHHHhCCCc--------cceecCcHHHHHHHHHHHHHHHHH----hcCC--CCCCEEEEcCCCCcccHHHHHHCCc
Q 001989 637 LGEWLCTITGFDS--------FSLQPNAGAAGEYAGLMVIRAYHK----ARGD--HHRNVCIIPVSAHGTNPATAAMCGM 702 (985)
Q Consensus 637 ~~~~la~l~G~~~--------~~~~~~sGa~a~~a~l~air~~~~----~~g~--~~~~~IIv~~~~Hg~~~~~a~~~G~ 702 (985)
+.+|+++++|++. ..++.++|+++++.+++++|.... ..|. .++..|++++.+|.+..+++.+.|+
T Consensus 84 vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~lGl 163 (373)
T PF00282_consen 84 VIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAARILGL 163 (373)
T ss_dssp HHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHHHHHTTS
T ss_pred HHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHhcceeee
Confidence 9999999999982 245667888899888888886532 1221 1234677899899999999999999
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhc--CCCEE-EEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEcccccccc--CC
Q 001989 703 KIVSVGTDAKGNINIEELRKAAEAN--RDNLS-TLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV--GL 776 (985)
Q Consensus 703 ~vv~v~~d~~g~iD~e~L~~~i~~~--~~~t~-~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~--~l 776 (985)
.++.||+|++|++|+++|+++|++. +..+. +|+.+.++ .+|.++ |+++|+++|+++++|+|||+|..-+.. ..
T Consensus 164 g~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D-~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~ 242 (373)
T PF00282_consen 164 GVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAID-PLEEIADICEKYNIWLHVDAAYGGSALLSPE 242 (373)
T ss_dssp EEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB--SHHHHHHHHHHCT-EEEEEETTGGGGGGHCT
T ss_pred EEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCccccccc-CHHHHhhhccccceeeeeccccccccccccc
Confidence 9999999999999999999998742 22344 66677776 599999 999999999999999999998631110 11
Q ss_pred CC---CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccc--cCcC---CCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 777 TS---PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHL--APFL---PSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 777 ~~---pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l--~~~l---p~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
.+ .+-..+|.++.++|||+..|++ .|++.++++. ...+ +.++.....+.. ........++..+.
T Consensus 243 ~~~~~~gi~~adSit~d~HK~l~~P~~-----~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~-~~~~~~~~tl~~SR-- 314 (373)
T PF00282_consen 243 YRHLLFGIERADSITIDPHKWLGVPYG-----CGVLLVRDKSDLRDAFSINADYLGNDDRESD-ESYDYGDYTLQGSR-- 314 (373)
T ss_dssp TGGGGTTGGGESEEEEETTTTTS-SSS------EEEEESSGGGHHGGGEEEETCTT-S-SSS--GGGCEEEGSSSSSG--
T ss_pred ccccccccccccccccchhhhhcCCcc-----ceeEEeecccchHHHhccChhhhcccccccc-cccccccccccccc--
Confidence 11 1234589999999999988765 4578888532 1111 111110000000 00000111222222
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCee
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPIL 893 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~ 893 (985)
...++..|+.|+.+|.+|++++.++.++++++++++|++ .++++
T Consensus 315 -~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~ 360 (373)
T PF00282_consen 315 -RFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELV 360 (373)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEES
T ss_pred -cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 344577899999999999999999999999999999987 34443
No 80
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=99.89 E-value=3.7e-21 Score=223.85 Aligned_cols=303 Identities=14% Similarity=0.150 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHhCCCccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEE---
Q 001989 633 MFNNLGEWLCTITGFDSFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKI--- 704 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~v--- 704 (985)
..+++++ + +++|.++..+ +..+++++.. .+++.+. .++ .++++|++++..|++.... ++..|+++
T Consensus 72 ~~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~---~~~~~~~-~~~-~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~ 144 (406)
T TIGR01814 72 LDESLLK-L-RLVGAKEDEVVVMNTLTINLH---LLLASFY-KPT-PKRYKILLEAKAFPSDHYAIESQLQLHGLTVEES 144 (406)
T ss_pred hhhhhcc-c-cccCCCCCcEEEeCCchHHHH---HHHHHhc-CCc-CCccEEEecCCCCChHHHHHHHHHHhcCCCcccc
Confidence 3334444 4 7999876544 3444555443 2333321 111 1234688888888875432 35678887
Q ss_pred -EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 705 -VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 705 -v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
+.++.+++|.+|++++++.+++..++|++|++++++ .+|.+. |+++|+++||++|++++||++|..+...+ +..++
T Consensus 145 ~~~~~~~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~-~~~~i~~~~~~~g~~~~vD~aq~~G~~~i-d~~~~ 222 (406)
T TIGR01814 145 MVQIEPREEETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQLF-DMAAITRAAHAKGALVGFDLAHAVGNVPL-DLHDW 222 (406)
T ss_pred eEEeccCCCCccCHHHHHHHHHhcCCCeEEEEEeccccccceec-CHHHHHHHHHHcCCEEEEEcccccCCccc-ccccC
Confidence 567766678899999999886444789999999985 589998 89999999999999999999997665543 45678
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEccc-ccCcCCCCccccCCCC------------C-CCCCCCCCCCCCCcchh
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPFLPSHPVVSTGGI------------P-APEKSQPLGTIAAAPWG 848 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-l~~~lp~~~~g~~~~~------------~-~~~~~~~~~~i~s~~~g 848 (985)
|+|++++++||||+ |||| |+++++++ .....| ...|+.... . ..+.+.+|.++.
T Consensus 223 gvD~~~~s~hK~l~-----g~pG-~~l~v~~~~~~~~~p-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~----- 290 (406)
T TIGR01814 223 GVDFACWCTYKYLN-----AGPG-AGAFVHEKHAHTERP-RLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPIL----- 290 (406)
T ss_pred CCCEEEEcCccccC-----CCCC-eEEEEehhhhhhcCC-CCCcccCCCCccccccccccCCCccceeeCCccHH-----
Confidence 99999999999984 5677 55655433 222222 222221100 0 001112222221
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccC----CeeecCCCCc--eeeEEEEEecCccccCCCCHHH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHY----PILFRGVNGT--VAHEFIVDLRGLKNTAGIEPED 922 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~----~l~~~~~~~~--~~~~~iv~~~~~~~~~g~~~~~ 922 (985)
.+....+++..+...|+.++.++...+++++++.|++.. .+...++..+ ....+.+.++ .+.++
T Consensus 291 ---~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-------~~~~~ 360 (406)
T TIGR01814 291 ---SVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-------VPGKA 360 (406)
T ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-------CCHHH
Confidence 122223445555556677777888999999999887621 1221122111 1122344432 35789
Q ss_pred HHHHHHHCCCccCCCCCCCCCEEEEec-cCCCCHHHHHHHHccCChhHHH
Q 001989 923 VAKRLMDYGFHGPTMSWPVPGTLMIEP-TESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 923 v~~~L~~~Gi~~~~~~~p~~~~lris~-t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+.++|.++||.+... .++.+|||+ +.++|++|||+ +++.|++++
T Consensus 361 ~~~~L~~~gi~v~~~---~~~~iRiS~~~~~nt~~did~--l~~~l~~~~ 405 (406)
T TIGR01814 361 VFQALIKRGVIGDKR---EPSVIRVAPVPLYNTFVDVYD--AVNVLEEIL 405 (406)
T ss_pred HHHHHHHCCEEEecc---CCCeEEEechhccCCHHHHHH--HHHHHHHHh
Confidence 999999999986421 137899999 68999999999 777777653
No 81
>PLN02409 serine--glyoxylate aminotransaminase
Probab=99.88 E-value=5.9e-21 Score=221.47 Aligned_cols=323 Identities=14% Similarity=0.100 Sum_probs=226.2
Q ss_pred ecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCc-ceeeccchHHHHHHHHHHh
Q 001989 170 FIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMS-NASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 170 ~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~-~~sl~~~~ta~~ea~~~a~ 248 (985)
+.+.| |..+|+.+.+++ .++. ..+ .+.+..+.+.+.++.+++++|.+.. .+.+..++|+++++++...
T Consensus 12 l~~pG--P~~~~~~V~~a~-~~~~--~~~------~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~ 80 (401)
T PLN02409 12 LFVPG--PVNIPERVLRAM-NRPN--EDH------RSPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNT 80 (401)
T ss_pred eccCC--CCCCCHHHHHHh-cCCC--CCC------CCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhc
Confidence 44566 566888886443 3322 222 1344567788899999999999764 4566678887777666543
Q ss_pred hhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCC----CEeEEEEEcC-CCCeeecc
Q 001989 249 NIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSG----DVCGVLVQYP-GTEGEVLD 314 (985)
Q Consensus 249 ~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~----~t~~V~v~~p-n~~G~v~d 314 (985)
+ ++||+|++++..|++.. |...++..|++++.++. +++++ +++ ++++|+++++ |.+|.+.|
T Consensus 81 -~--~~Gd~Vlv~~~~~~~~~--~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~ 155 (401)
T PLN02409 81 -L--SPGDKVVSFRIGQFSLL--WIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTND 155 (401)
T ss_pred -C--CCCCEEEEeCCCchhHH--HHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCC
Confidence 2 38999999998887754 33445567888887753 34555 554 7899998876 78999999
Q ss_pred HHHHHHH--HHhCCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeee
Q 001989 315 YGDFIKN--AHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGV 390 (985)
Q Consensus 315 i~~I~~~--a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~ 390 (985)
+++|+++ ||++|++++||+ ..++|.+. +..+||+|+++.++ |+|++| ||+||+++++++++++.....
T Consensus 156 ~~~i~~l~~~~~~g~~~vvD~-v~s~g~~~id~~~~~~D~~~~s~~K~l~~P-----~G~G~l~~~~~~~~~~~~~~~-- 227 (401)
T PLN02409 156 LAGVRKLLDCAQHPALLLVDG-VSSIGALDFRMDEWGVDVALTGSQKALSLP-----TGLGIVCASPKALEASKTAKS-- 227 (401)
T ss_pred HHHHHHHHhhhccCcEEEEEc-ccccCCccccccccCccEEEEcCccccCcC-----CCcceeEECHHHHHHHhcCCC--
Confidence 9999999 999999999953 45666543 45789999999999 667554 568999999988877632100
Q ss_pred eecCCCCcceeeecccccc---cccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCe
Q 001989 391 SIDSSGKPALRVAMQTREQ---HIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 391 t~d~~g~~~~~l~l~tre~---~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~ 467 (985)
..+.+++..... .-.+...|+|+ ..++++.+++ .++..+|++++.+++.++++++++.|+++| +
T Consensus 228 -------~~~~~~~~~~~~~~~~g~~~~~Tp~~---~~~~al~~al--~~~~~~G~e~i~~~~~~l~~~l~~~L~~~g-~ 294 (401)
T PLN02409 228 -------PRVFFDWADYLKFYKLGTYWPYTPSI---QLLYGLRAAL--DLIFEEGLENVIARHARLGEATRLAVEAWG-L 294 (401)
T ss_pred -------CCeecCHHHHHHHHhcCCCCCCCccH---HHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence 001111100000 00111235554 5677777776 565678999999999999999999999997 8
Q ss_pred EEcCC---CCcceE-EEecCC---HHHHHHHHH-HcCceeee----ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 468 EVQGL---PFFDTV-KVKCAD---AHAIASAAY-KIEMNLRV----VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 468 ~~~~~---~~~~~~-~~~~~~---~~~v~~~L~-~~GI~~~~----~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+++.+ .....+ .+..+. +.++.+.|. ++||.+.. ..+..+|++.+-++|.+|+.+++++|+.
T Consensus 295 ~~~~~~~~~~s~~v~~~~~p~~~~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~ 368 (401)
T PLN02409 295 KLCTKKPEWRSDTVTAVVVPEGIDSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEM 368 (401)
T ss_pred eeccCChhhcccceEEEeCCCCCCHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 98742 123333 365543 678888876 56998753 2357899999999999999999999985
No 82
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=99.88 E-value=8.2e-21 Score=217.72 Aligned_cols=316 Identities=12% Similarity=0.079 Sum_probs=203.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCcc---ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEE-EEcCCCCccc-HHHHHHCCcE
Q 001989 629 GYQEMFNNLGEWLCTITGFDSF---SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVC-IIPVSAHGTN-PATAAMCGMK 703 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~---~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~I-Iv~~~~Hg~~-~~~a~~~G~~ 703 (985)
.+.+.++++++.+++++|.+.. .++.++|++|+.+++.++. .+++++ ++....|+.. ...++..|++
T Consensus 32 ~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~--------~~~~~vlv~~~~~~~~~~~~~a~~~g~~ 103 (363)
T TIGR02326 32 DYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAV--------PKDGKLLVVINGAYGARIVQIAEYLGIP 103 (363)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcC--------CCCCeEEEEeCChhhHHHHHHHHHcCCc
Confidence 3556788999999999999752 3455677777755544331 244554 4455555443 3446788999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
++.+++++++.+|+++++++++++ +++++|.++++ |.+|++. |+++|+++||++|++++||++|..+...+ +..++
T Consensus 104 ~~~v~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~tG~~~-~i~~I~~l~~~~g~~livD~~~~~g~~~~-~~~~~ 180 (363)
T TIGR02326 104 HHVVDTGEVEPPDVVEVEAILAAD-PAITHIALVHCETTTGILN-PIEAVAKLAHRHGKVTIVDAMSSFGGIPI-DIAEL 180 (363)
T ss_pred eEEEeCCCCCCCCHHHHHHHHhhC-CCccEEEEEeecCCccccC-cHHHHHHHHHHcCCEEEEEccccccCccc-chhhc
Confidence 999999888999999999999742 35666777775 5799998 89999999999999999999986433222 34567
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC-CCC---CCCCCCCCCCCcchhhhHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI-PAP---EKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~-~~~---~~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
++|++++++||||+ |+||+|+++++++....+.+...+...+. ..+ ....+......+ .....+..+
T Consensus 181 ~~D~~~~s~~K~l~-----~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~----~~~~~al~~ 251 (363)
T TIGR02326 181 HIDYLISSANKCIQ-----GVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSP----THVVHAFAQ 251 (363)
T ss_pred CccEEEecCccccc-----cCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCc----HHHHHHHHH
Confidence 89999999999985 45689999999765543321111100000 000 000000000011 111122223
Q ss_pred HHHHhcHH-HHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceee-EEEEEecCccccCCCCHHHHHHHHHHCCCccC
Q 001989 859 YIAMMGSK-GLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAH-EFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP 935 (985)
Q Consensus 859 ~l~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~-~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~ 935 (985)
.+..+..+ |+.++.++..++++++++.|++ ++++... + ....+ ...+.++. ..+.+..++.+.|.++||.+.
T Consensus 252 al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~-~~~~~~~~~~~~~~---~~~~~~~~v~~~L~~~gi~v~ 326 (363)
T TIGR02326 252 ALLELEKEGGVAARHQRYQQNQKTLVAGMRALGFEPLLD-D-EIQSPIITSFYSPE---DPDYRFADFYQRLKEQGFVIY 326 (363)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCeeccC-c-ccCCceEEEEECCC---CCCCCHHHHHHHHHHCCEEEE
Confidence 44444444 4777778889999999999976 5555322 1 11111 12334331 002466789999999999975
Q ss_pred CCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 936 TMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 936 ~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
.-..+..+.+||++..+++.+|+++ +++.|++++
T Consensus 327 ~g~~~~~~~iRi~~~~~~~~edv~~--~l~~l~~~l 360 (363)
T TIGR02326 327 PGKVSQVDCFRIGNIGEVDAADITR--LLTAIGKAM 360 (363)
T ss_pred CCcCCCCCEEEEecCCCCCHHHHHH--HHHHHHHHh
Confidence 3221224789999888899999999 777777765
No 83
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=99.88 E-value=6.4e-21 Score=219.37 Aligned_cols=296 Identities=13% Similarity=0.032 Sum_probs=209.2
Q ss_pred HHHHHHHHHHHHHhcCCCC-cceeecc-chHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCe-EEEEe
Q 001989 210 LESLLNFQTMIADLTGLPM-SNASLLD-EGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDI-KVVVS 286 (985)
Q Consensus 210 l~~i~e~q~~ia~L~g~~~-~~~sl~~-~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi-~v~~v 286 (985)
.+.+.+.++.+++++|++. .++.++. ++|.+++++..++ +. ++++.|++ .++|++....+ .++..|+ +++.+
T Consensus 47 ~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l-~~-~~~~~vi~-~g~f~~~~~~~--~~~~~g~~~v~~~ 121 (378)
T PRK03080 47 KALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSL-LG-ARRVDHLA-WESFGSKWATD--VVKQLKLEDPRVL 121 (378)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhc-CC-CCcceEEE-eCHHHHHHHHH--HHhhcCCCCceEe
Confidence 4788899999999999854 4687775 8999999888765 32 12444444 68998865442 1234677 77776
Q ss_pred Cch-----hhhccCCCEeEEEEEc-CCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecC-cc
Q 001989 287 DLK-----DIDYKSGDVCGVLVQY-PGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QR 358 (985)
Q Consensus 287 ~~~-----~l~~l~~~t~~V~v~~-pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~ 358 (985)
+.+ ++++++. ++.|.+++ .|.+|.+.|+++|++ |++|++++||+ ..++|..+ +..+ +|++++++ |+
T Consensus 122 ~~~~g~~~d~~~i~~-~~~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa-~qs~G~~pidv~~--iD~~~~s~~K~ 195 (378)
T PRK03080 122 EADYGSLPDLSAVDF-DRDVVFTWNGTTTGVRVPVARWIG--ADREGLTICDA-TSAAFALPLDWSK--LDVYTFSWQKV 195 (378)
T ss_pred ccCCCCCCCHhhcCC-CCCEEEEecCCccceeccchhhcc--ccCCCeEEEec-ccccccCCCCHHH--CcEEEEehhhh
Confidence 542 2222333 55677776 588999999999999 89999999954 45666553 2233 79999999 55
Q ss_pred ccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccc--ccccccccccCCCccchhHHHHHHHHHHHH
Q 001989 359 FGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQT--REQHIRRDKATSNICTAQALLANMAAMYAV 436 (985)
Q Consensus 359 lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~t--re~~irre~atsni~t~~~l~a~~aa~~l~ 436 (985)
|++| ||+|++++++++++++.+...||.. + +.+++.. .....+++.+|.|.....+++++.+++ .
T Consensus 196 l~~P-----~G~g~l~v~~~~~~~~~p~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al--~ 262 (378)
T PRK03080 196 LGGE-----GGHGMAILSPRAVERLESYTPARPI-----P-KFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQL--D 262 (378)
T ss_pred CCCC-----CceEEEEECHHHHHhhhcccCCCCC-----c-hhheeccchHHhhhhhcCCcccCchHHHHHHHHHHH--H
Confidence 5443 6799999999999888776666521 1 1222211 011123456777776667777777776 6
Q ss_pred HhCcc-hHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-C--Cc-ceEEEecCC-----HHHHHHHHHHcCceeee--e--
Q 001989 437 YHGPE-GLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-P--FF-DTVKVKCAD-----AHAIASAAYKIEMNLRV--V-- 502 (985)
Q Consensus 437 ~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~--~~-~~~~~~~~~-----~~~v~~~L~~~GI~~~~--~-- 502 (985)
++..+ |++++.+|+.+++++++++|+++|+++++.. + .. ..++|+.++ ..++...|.++||.++. .
T Consensus 263 ~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~~~~~~~~~l~~~~i~v~~g~~~~ 342 (378)
T PRK03080 263 WANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQAAVDAAAVAKLLRENGAVDIEPYRD 342 (378)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCchHHHHHHHHHHHHHcCCeeccccccC
Confidence 66666 8999999999999999999999975777631 2 22 246666553 34567777777887643 1
Q ss_pred cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+.+|+|++.+||++|||+|+++|++
T Consensus 343 ~~~~vRis~~~~~t~~di~~l~~al~~ 369 (378)
T PRK03080 343 APNGLRIWCGPTVEPADVEALTPWLDW 369 (378)
T ss_pred CCCcEEEecCCCCCHHHHHHHHHHHHH
Confidence 247899999999999999999999974
No 84
>PRK14012 cysteine desulfurase; Provisional
Probab=99.88 E-value=2e-20 Score=217.69 Aligned_cols=310 Identities=13% Similarity=0.147 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH---HHCCcEEEE
Q 001989 631 QEMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA---AMCGMKIVS 706 (985)
Q Consensus 631 ~~~~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a---~~~G~~vv~ 706 (985)
.+.++++++.+++++|.+... ++.++|++|+..++.++..+. ..++++||+++..|+++...+ +..|++++.
T Consensus 48 ~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~~~~----~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~ 123 (404)
T PRK14012 48 EEAVDIARNQIADLIGADPREIVFTSGATESDNLAIKGAAHFY----QKKGKHIITSKTEHKAVLDTCRQLEREGFEVTY 123 (404)
T ss_pred HHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHHHhh----cCCCCEEEEecCccHHHHHHHHHHHhCCCEEEE
Confidence 356788999999999997643 455677777655554443211 136789999988887765443 346999999
Q ss_pred EcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCc
Q 001989 707 VGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGAD 785 (985)
Q Consensus 707 v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~D 785 (985)
++++++|.+|+++|+++|+ +++++|+++++ |++|.+. |+++|.++||++|+++++|++|..+...+ +...+++|
T Consensus 124 v~~~~~g~~d~~~l~~~i~---~~t~lv~~~~~~n~tG~~~-~~~~I~~la~~~g~~vivD~a~~~g~~~~-~~~~~~~D 198 (404)
T PRK14012 124 LDPQSNGIIDLEKLEAAMR---DDTILVSIMHVNNEIGVIQ-DIAAIGEICRERGIIFHVDAAQSVGKVPI-DLSKLKVD 198 (404)
T ss_pred EccCCCCcCCHHHHHHhcC---CCCEEEEEECcCCCccchh-hHHHHHHHHHHcCCEEEEEcchhcCCccc-CcccCCCC
Confidence 9998889999999999997 78999999987 5799998 89999999999999999999996443322 34567899
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
++++|+||.+ |++|.|+++++++....+.....|...+ ++.+.++.++. ....+.++ +..+ .
T Consensus 199 ~~~~s~~K~~------gp~g~G~l~~~~~~~~~~~~~~~g~~~~---~~~~~gt~~~~-----~~~~l~~a---l~~~-~ 260 (404)
T PRK14012 199 LMSFSAHKIY------GPKGIGALYVRRKPRVRLEAQMHGGGHE---RGMRSGTLPTH-----QIVGMGEA---ARIA-K 260 (404)
T ss_pred EEEEehhhcc------CCCceEEEEEecCCCCCCCceecCCCcc---CCccCCCcCHH-----HHHHHHHH---HHHH-H
Confidence 9999999965 2236899988865433332222222100 00111222221 11112222 2222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeeecCC-CCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC-CC-----
Q 001989 866 KGLTEASKIAILNANYMAKRLEKHYPILFRGV-NGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT-MS----- 938 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~-~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~-~~----- 938 (985)
.++.+..++..++++++.+.|++...+...++ .....+.+.+.+. ..+..++.+.|.+.+|..+. +.
T Consensus 261 ~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~i~~g~~~~~~~~~ 334 (404)
T PRK14012 261 EEMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFN------YVEGESLIMALKDLAVSSGSACTSASLE 334 (404)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEe------CcCHHHHHHhCCCeEEEchhhhCCCCCC
Confidence 24455666778888999998876322322111 1111122233433 12345677777543332211 00
Q ss_pred -------CC-----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 939 -------WP-----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 939 -------~p-----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.| ..+.+|++++.++|++|+|+ +++.|+++++.++
T Consensus 335 ~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~--~~~~l~~~~~~~~ 381 (404)
T PRK14012 335 PSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDY--AIELVRKSIGKLR 381 (404)
T ss_pred CCHHHHHcCCChhhcCceEEEEecCCCCHHHHHH--HHHHHHHHHHHHH
Confidence 11 13789999999999999999 8899999887764
No 85
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=99.88 E-value=2e-20 Score=208.56 Aligned_cols=317 Identities=15% Similarity=0.172 Sum_probs=224.1
Q ss_pred hhHHHHHHHHHHHHHHHhCCCc--cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH----HHHHHCC
Q 001989 628 QGYQEMFNNLGEWLCTITGFDS--FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP----ATAAMCG 701 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~--~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~----~~a~~~G 701 (985)
+-+..++.++.+.+..+++.+. ..+..+||+.|+|+++..+- .++|+||+... |.|. ..++..|
T Consensus 34 ~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~--------~pgdkVLv~~n--G~FG~R~~~ia~~~g 103 (383)
T COG0075 34 PDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLV--------EPGDKVLVVVN--GKFGERFAEIAERYG 103 (383)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhcc--------CCCCeEEEEeC--ChHHHHHHHHHHHhC
Confidence 3455678889999999999883 45667889888887765432 47889988654 4443 3478899
Q ss_pred cEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CCC
Q 001989 702 MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TSP 779 (985)
Q Consensus 702 ~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~~p 779 (985)
.+++.+..+++-.+|+++++++|++. ++.++|.++|. +.+|+.+ |+++|+++|+++|++++||++.+ +|+. ..+
T Consensus 104 ~~v~~~~~~wg~~v~p~~v~~~L~~~-~~~~~V~~vH~ETSTGvln-pl~~I~~~~k~~g~l~iVDaVsS--~Gg~~~~v 179 (383)
T COG0075 104 AEVVVLEVEWGEAVDPEEVEEALDKD-PDIKAVAVVHNETSTGVLN-PLKEIAKAAKEHGALLIVDAVSS--LGGEPLKV 179 (383)
T ss_pred CceEEEeCCCCCCCCHHHHHHHHhcC-CCccEEEEEeccCcccccC-cHHHHHHHHHHcCCEEEEEeccc--CCCcccch
Confidence 99999999888889999999999843 56778888886 5699999 99999999999999999999865 4443 367
Q ss_pred CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCcc-ccCCCCCC----CCCCCCCCCCCCcchhhhHHHH
Q 001989 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPV-VSTGGIPA----PEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 780 g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~-g~~~~~~~----~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
.+||+|+++.+++|+|+.| ||+|++.++++.++.+..+-. +.+-|... +.....++.++ . .....
T Consensus 180 d~wgiDv~itgSQK~l~~P-----PGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tp---p--v~~i~ 249 (383)
T COG0075 180 DEWGIDVAITGSQKALGAP-----PGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTP---P--VNLIY 249 (383)
T ss_pred hhcCccEEEecCchhccCC-----CccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCC---C--HHHHH
Confidence 8999999999999999754 899999999876544322100 11111100 00101111111 1 11122
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH-CCC
Q 001989 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD-YGF 932 (985)
Q Consensus 855 ~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~-~Gi 932 (985)
+-..+++.+-.||+.++.+++..+++++++.+++ |+++.. .+.........+..+ .|++..++...|.+ +|+
T Consensus 250 aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~-~~~~~s~tvta~~~P-----~g~~~~~~~~~~~~~~g~ 323 (383)
T COG0075 250 ALREALDLILEEGLEARIARHRRLAEALRAGLEALGLELFA-DPERRSPTVTAIKVP-----EGVDDKKVRRALLKEYGV 323 (383)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCcccc-CcccCCCceEEEECC-----CCCCcHHHHHHHHHhCCE
Confidence 2236678888999999999999999999999997 787754 221111112334444 36665555555555 588
Q ss_pred ccCCCCCCCC-CEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 933 HGPTMSWPVP-GTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 933 ~~~~~~~p~~-~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.+..-..|.. ..+||.-.-+.+.+++.. .+..|..++.++..
T Consensus 324 ~i~gg~~~l~gkifRIGhMG~~~~~dv~~--~l~ale~~L~~~g~ 366 (383)
T COG0075 324 EIAGGQGPLKGKIFRIGHMGNVRPEDVLA--ALAALEAALRELGV 366 (383)
T ss_pred EecccccccCccEEEEecCccCCHHHHHH--HHHHHHHHHHHcCC
Confidence 8765443433 689999988999999999 77888888887654
No 86
>PRK02769 histidine decarboxylase; Provisional
Probab=99.88 E-value=2e-20 Score=213.81 Aligned_cols=282 Identities=18% Similarity=0.145 Sum_probs=201.1
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcc--eeeccchHHHHHHHH-HHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001989 207 QGRLESLLNFQTMIADLTGLPMSN--ASLLDEGTAAAEAMA-MCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~~~--~sl~~~~ta~~ea~~-~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v 283 (985)
+++.+...+..+++|+|+|+++.. ..+++|||.+....+ .++.+ .++++|++++.+|+|+.+.++.+ |++.
T Consensus 61 ~~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~--~~~~~ii~s~~~H~Sv~ka~~~l----g~~~ 134 (380)
T PRK02769 61 LNSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLAREL--FPDGTLYYSKDTHYSVSKIARLL----RIKS 134 (380)
T ss_pred CChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHh--CCCcEEEeCCCceehHHHHHHHc----CCCC
Confidence 356788889999999999997544 477888885433222 22222 36789999999999999998653 3333
Q ss_pred EEe--------Cchhhhc-cCCC---EeEEEEEcC-CCCeeeccHHHHHHHHHhCC---cEEEEEecCccccCCC-----
Q 001989 284 VVS--------DLKDIDY-KSGD---VCGVLVQYP-GTEGEVLDYGDFIKNAHANG---VKVVMATDLLALTILK----- 342 (985)
Q Consensus 284 ~~v--------~~~~l~~-l~~~---t~~V~v~~p-n~~G~v~di~~I~~~a~~~g---alliV~a~~~~lg~l~----- 342 (985)
+.+ |+++|++ ++++ |.+|+++++ |.+|.++|+++|+++||++| ++++||+ .++.+.+.
T Consensus 135 ~~V~~~~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDa-A~gg~~~p~~~~~ 213 (380)
T PRK02769 135 RVITSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADA-ALSGMILPFVNNP 213 (380)
T ss_pred ceeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEe-cccceeecccCcc
Confidence 333 3356666 6655 899999987 67999999999999999998 6999954 23333331
Q ss_pred --CCCcccceEEEecCccc-cccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 343 --PPGELGADIVVGSAQRF-GVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 343 --~~~~~GaDi~v~s~k~l-g~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
-....|+|.++.+++|| ++|+ |+|++++++++.+.+... .. |.- ..+. ...||.|
T Consensus 214 ~~~d~~~~vDsis~s~HK~~~~P~-----g~G~l~~r~~~~~~~~~~-~~----------yl~---~~d~---t~~GSR~ 271 (380)
T PRK02769 214 PPFSFADGIDSIAISGHKFIGSPM-----PCGIVLAKKKYVERISVD-VD----------YIG---SRDQ---TISGSRN 271 (380)
T ss_pred ccCCccCCCCEEEECCcccCCCCC-----CcEEEEEehhhhhhcccC-cc----------ccC---CCCC---CccCCCC
Confidence 11223999999999555 4464 478999999887766421 00 110 0000 1245555
Q ss_pred ccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCCHHHHHHHHHHcCcee
Q 001989 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNL 499 (985)
Q Consensus 420 i~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~GI~~ 499 (985)
..+ ..++-++ +.++|.+|++++.+++.++++|+.++|++.| ++++..|..++|+|..+.. ++. +||.+
T Consensus 272 g~~---~l~lw~a--L~~lg~~G~~~~~~~~~~la~~l~~~L~~~g-~~~~~~p~~~~v~f~~~~~-~~~-----~~w~l 339 (380)
T PRK02769 272 GHT---ALLLWAA--IRSLGSKGLRQRVQHCLDMAQYAVDRLQANG-IPAWRNPNSITVVFPCPSE-RIW-----KKWHL 339 (380)
T ss_pred cHH---HHHHHHH--HHHHCHHHHHHHHHHHHHHHHHHHHHHHhCC-CEEEcCCCceEEEEcCCCH-HHH-----hCeeE
Confidence 532 2233333 4889999999999999999999999999987 9988777777888876642 221 67887
Q ss_pred eeecCCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001989 500 RVVDSNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 500 ~~~~~~~lris~t~~~t~edId~li~aL~~~ 530 (985)
... ++.++++++..+|+|.||.|++.|...
T Consensus 340 ~~~-~~~~hi~~~~~~~~~~~~~f~~dl~~~ 369 (380)
T PRK02769 340 ATS-GNQAHIITMPHHNKQQIDSLIDELIFD 369 (380)
T ss_pred ccc-CCEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 654 468999999999999999999999864
No 87
>PLN02271 serine hydroxymethyltransferase
Probab=99.87 E-value=1.1e-20 Score=217.36 Aligned_cols=311 Identities=15% Similarity=0.096 Sum_probs=208.1
Q ss_pred HHHHHHHHHHHHHhCCCc----cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH---------HH
Q 001989 632 EMFNNLGEWLCTITGFDS----FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT---------AA 698 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~----~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~---------a~ 698 (985)
++..-+.+...++||.+. +++++.||+.|+.++++++. +++|+|+..+..||.|... +.
T Consensus 194 ~iE~la~era~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ALl--------~PGD~IL~ldl~~GGHlshg~~~~~g~~vs 265 (586)
T PLN02271 194 QIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYTGLL--------LPGDRIMGLDSPSGGHMSHGYYTPGGKKVS 265 (586)
T ss_pred HHHHHHHHHHHHHhCCcccccccceeeccHHHHHHHHHHHhc--------CCCCEEEEecCCCCCchhcccccccccccc
Confidence 444445677788999887 78999999999988877663 4889999988888877442 23
Q ss_pred HCCcEEEEEc--CC-CCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccC
Q 001989 699 MCGMKIVSVG--TD-AKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG 775 (985)
Q Consensus 699 ~~G~~vv~v~--~d-~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~ 775 (985)
..|..+..+| +| ++|.+|+++|++.+.+ .++++|++.+..+. ... |+++|+++|+++|++++||++|..++..
T Consensus 266 ~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~--~rPKLII~g~Sayp-r~~-D~~~i~eIAdevGA~LmvD~AH~aGLIa 341 (586)
T PLN02271 266 GASIFFESLPYKVNPQTGYIDYDKLEEKALD--FRPKILICGGSSYP-REW-DYARFRQIADKCGAVLMCDMAHISGLVA 341 (586)
T ss_pred cccceEEEEEcccccccCccCHHHHHHHhhh--cCCeEEEECchhcc-CcC-CHHHHHHHHHHcCCEEEEECcccccccc
Confidence 4565444444 65 4599999999985432 78898888665443 223 8999999999999999999999766643
Q ss_pred CC---CCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCC----CCCCC-CCCCCCcch
Q 001989 776 LT---SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAP----EKSQP-LGTIAAAPW 847 (985)
Q Consensus 776 l~---~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~----~~~~~-~~~i~s~~~ 847 (985)
.. .|.. ++|++++++|||| .||.+|+|+++++..+...+...++..+.... ...++ ++...+++.
T Consensus 342 ~g~~~sP~~-~aDvvt~TTHKtL------rGPrGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGph 414 (586)
T PLN02271 342 AKECVNPFD-YCDIVTSTTHKSL------RGPRGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPH 414 (586)
T ss_pred cCcCCCCCc-CCcEEEeCCcccC------CCCCceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChh
Confidence 22 3433 5999999999999 57866888888765555444333322110000 00001 111111111
Q ss_pred hhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHH
Q 001989 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~ 926 (985)
... .++.| ..+.......++++++++.+|++.|++.|.+ |++++..+ ...|.++++++. .|+++..+.+.
T Consensus 415 n~~-IAalA-valkea~~~efk~Ya~QVv~NAkaLA~~L~~~G~~vv~gg---TdnHlvLvDl~~----~g~~G~~ae~~ 485 (586)
T PLN02271 415 NNH-IAALA-IALKQVATPEYKAYMQQVKKNAQALASALLRRKCRLVTGG---TDNHLLLWDLTT----LGLTGKNYEKV 485 (586)
T ss_pred HHH-HHHHH-HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHCCCeEeeCC---CCcceeeecCcc----cCCCHHHHHHH
Confidence 111 22222 2334443445789999999999999999976 89987643 456788899863 36788888999
Q ss_pred HHHCCCccCCCC--C---C-CCCEEEEeccCC----CCHHHHHHHHccCChhHHHH
Q 001989 927 LMDYGFHGPTMS--W---P-VPGTLMIEPTES----ESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 927 L~~~Gi~~~~~~--~---p-~~~~lris~t~~----~t~eeId~~~~~~~l~~~~~ 972 (985)
|.+.||.++... + | .++.|||...+. ..++|+++ ..+.+.++++
T Consensus 486 Le~~~I~~Nkn~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~--iA~~i~~~~~ 539 (586)
T PLN02271 486 CEMCHITLNKTAIFGDNGTISPGGVRIGTPAMTSRGCLESDFET--IADFLLRAAQ 539 (586)
T ss_pred HHHcCeEeccccCCCCCCCCCCCcccccCHHHHhcCCCcHHHHH--HHHHHHHHHh
Confidence 999999886422 1 1 357899987653 44577777 4455555544
No 88
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=99.87 E-value=2.1e-20 Score=214.81 Aligned_cols=306 Identities=13% Similarity=0.135 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA 711 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~ 711 (985)
....++++.+++++|.+.+.+ .++|++++.+++.++. +++++|+++...|.+....++..|++++.+|++.
T Consensus 51 ~~~~~~~e~lA~~~g~~~~~i-~~g~~~a~~~~~~~l~--------~~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~ 121 (370)
T TIGR02539 51 PPIHDFLEDLAEFLGMDEARV-THGAREGKFAVMHALC--------KEGDWVVLDGLAHYTSYVAAERAGLNVKEVPHTG 121 (370)
T ss_pred hHHHHHHHHHHHHhCCCceEE-ECChHHHHHHHHHHhh--------CCCCEEEECCcccHHHHHHHHHcCCEEEEEecCC
Confidence 345677888999999987655 5777777755544432 3678999988877666666788999999999863
Q ss_pred --CCCCCHHHHHHHHHhc----CCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCC
Q 001989 712 --KGNINIEELRKAAEAN----RDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGA 784 (985)
Q Consensus 712 --~g~iD~e~L~~~i~~~----~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~ 784 (985)
++.+|+++|++++++. .+++++|++++|+ .+|.+. |+++|.++|+++|++++||++|..+..+. ....+++
T Consensus 122 ~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~-~l~~i~~la~~~~~~livDea~~~g~~~~-~~~~~~~ 199 (370)
T TIGR02539 122 HPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLP-DAGKVAKVCREKGVPLLLNCAYTVGRMPV-SAKEIGA 199 (370)
T ss_pred cccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCcccc-CHHHHHHHHHHcCCeEEEECccccCCcCC-CHHHcCC
Confidence 4789999999999631 1367899999995 699998 89999999999999999999997542221 2235679
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
|+++.++||+|+. +| ++|++++++++.+.+......+.. . ......++.... .+.++++.+..+
T Consensus 200 di~v~s~sK~~~~----~g-~~G~l~~~~~~i~~l~~~~~~~~~-------~-~~~~~~~~~~~~--~~~~~~~al~~~- 263 (370)
T TIGR02539 200 DFIVGSGHKSMAA----SG-PCGVLGMSEEWEDIVLRKSRYSPV-------K-EVELLGCTSRGA--PIVTMMASFPHV- 263 (370)
T ss_pred CEEEeeCcccccC----CC-CEEEEEECHHHHhhhcccccCCcc-------c-eeeeeccccccc--HHHHHHHHHHHH-
Confidence 9999999999952 23 489999998777655422100000 0 000000000001 112223333321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccc---cCCCCHHHHHHHHHHCCCc-cCCCCC
Q 001989 865 SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKN---TAGIEPEDVAKRLMDYGFH-GPTMSW 939 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~---~~g~~~~~v~~~L~~~Gi~-~~~~~~ 939 (985)
.+.+. ..++..+++++++++|++ ++++....+.. .+.+.++++.... ........+.++|.++||. +. +
T Consensus 264 ~~~l~-~~~~~~~~~~~l~~~L~~~g~~~~~~~~s~--t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~ir---~ 337 (370)
T TIGR02539 264 VERVK-RWDEEVKKTRWFVAELEDIGFIQLGQKPKE--HDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGIR---S 337 (370)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHhCCcEEEccCCCc--CceEEEECCchhHHhhhhccccHHHHHHHHhCCCcccc---C
Confidence 12222 233445667899999987 55542111111 2223344431100 0011345799999999997 32 2
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 940 PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 940 p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+.++.+||++. ..|++|+++ +++.|++++++
T Consensus 338 ~~~~~iRis~~-~~t~e~i~~--l~~~L~~~~~~ 368 (370)
T TIGR02539 338 GQTKYFKLSVY-GLTKEQVEY--VVDSFEEIVEE 368 (370)
T ss_pred CcceEEEEEec-CCCHHHHHH--HHHHHHHHHHh
Confidence 33468999984 679999999 78888887764
No 89
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=99.87 E-value=1.1e-20 Score=209.26 Aligned_cols=173 Identities=20% Similarity=0.324 Sum_probs=140.8
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH---HHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA---AMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a---~~~G~~v 704 (985)
......+++.++.+|+++|+++..+.+++|++ +++.++++.+....+.+.+.+||+.+.+|++...++ +-.|++|
T Consensus 81 w~~~~~~E~aR~~VAklInAd~~dIiFts~AT--Es~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~V 158 (428)
T KOG1549|consen 81 WKAEDAVEAAREQVAKLINADPSDIVFTSGAT--ESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEV 158 (428)
T ss_pred hhhhHHHHHHHHHHHHHhCCCCCcEEEeCCch--HHHHHHHHHhhccccccccceEEEecccCcchhHHHHHHHhcCeEE
Confidence 34445588999999999999986666655543 366777776543322211227999999999886654 4679999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g 783 (985)
+.+|++.+|.+|++.+++.|+ ++|++|.+.+.| ..|+++ |++||+++|++.|+.||+|+||..+...+ +..+++
T Consensus 159 t~lpv~~~~~~d~~~~~~~i~---~~T~lv~I~~Vnn~~gv~~-Pv~EI~~icr~~~v~v~~DaAQavG~i~v-DV~eln 233 (428)
T KOG1549|consen 159 TYLPVEDSGLVDISKLREAIR---SKTRLVSIMHVNNEIGVLQ-PVKEIVKICREEGVQVHVDAAQAVGKIPV-DVQELN 233 (428)
T ss_pred EEeccCccccccHHHHHHhcC---CCceEEEEEecccCccccc-cHHHHHHHhCcCCcEEEeehhhhcCCccc-cHHHcC
Confidence 999999889999999999998 999999999875 699999 89999999999999999999997666553 667899
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcc
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKK 813 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~ 813 (985)
+|+++.++|||| |.||+|++|+++
T Consensus 234 ~D~~s~s~HK~y------gp~~iGaLYvr~ 257 (428)
T KOG1549|consen 234 ADFLSISAHKIY------GPPGIGALYVRR 257 (428)
T ss_pred chheeeeccccc------CCCcceEEEEcc
Confidence 999999999998 456899999996
No 90
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=99.87 E-value=2.4e-20 Score=213.28 Aligned_cols=295 Identities=16% Similarity=0.095 Sum_probs=207.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcc-eeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 208 GRLESLLNFQTMIADLTGLPMSN-ASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 208 g~l~~i~e~q~~ia~L~g~~~~~-~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
+..+.+.++++.+++++|.+..+ +.++.++|.++..++.++ . ++|++|+++...|++.. +...++..|.+++.+
T Consensus 29 ~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~-~--~~g~~vl~~~~~~~~~~--~~~~~~~~g~~~~~v 103 (356)
T cd06451 29 EFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNL-L--EPGDKVLVGVNGVFGDR--WADMAERYGADVDVV 103 (356)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHh-C--CCCCEEEEecCCchhHH--HHHHHHHhCCCeEEe
Confidence 34577888999999999996544 557777787665555444 2 37899999988887631 112233457777776
Q ss_pred Cc--------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEEe
Q 001989 287 DL--------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVG 354 (985)
Q Consensus 287 ~~--------~~l~~-l~~-~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~ 354 (985)
+. +++++ +++ ++++|++++| |.+|.+.|+++|+++||++|+++++|+ .+++|.. .+..++|+|++++
T Consensus 104 ~~~~~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~-~~~~g~~~~~~~~~~~d~~~~ 182 (356)
T cd06451 104 EKPWGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDA-VSSLGGEPFRMDEWGVDVAYT 182 (356)
T ss_pred ecCCCCCCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEee-ehhccCccccccccCccEEEe
Confidence 43 35555 666 8999999887 779999999999999999999999953 4456643 3456789999999
Q ss_pred cC-ccccccCCCCCCcEEEEEEchhhHhcCCC--ceeeeeecCCCCcceeeecccccccc--c-ccccCCCccchhHHHH
Q 001989 355 SA-QRFGVPMGYGGPHAAFLATSQEYKRMMPG--RIVGVSIDSSGKPALRVAMQTREQHI--R-RDKATSNICTAQALLA 428 (985)
Q Consensus 355 s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~--~~vG~t~d~~g~~~~~l~l~tre~~i--r-re~atsni~t~~~l~a 428 (985)
++ |+|++| +|+|++++++++++.+.. ...+ +.+.++...+.. + .+.+|.++ ..+++
T Consensus 183 s~~K~l~~p-----~g~G~l~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~t~~~---~~~~a 244 (356)
T cd06451 183 GSQKALGAP-----PGLGPIAFSERALERIKKKTKPKG----------FYFDLLLLLKYWGEGYSYPHTPPV---NLLYA 244 (356)
T ss_pred cCchhccCC-----CCcceeEECHHHHHHHHhcCCCCc----------eeecHHHHHhhhcccCCCCCCChH---HHHHH
Confidence 98 777654 357899999988876642 1111 122211111111 1 12233332 34556
Q ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC--CCcceE-EEecC-C--HHHHHHHHHHc-Cceeee
Q 001989 429 NMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL--PFFDTV-KVKCA-D--AHAIASAAYKI-EMNLRV 501 (985)
Q Consensus 429 ~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~~~~-~~~~~-~--~~~v~~~L~~~-GI~~~~ 501 (985)
+.+++ .++..+|++++.++..++++++++.|+++| +++..+ .+...+ .+..+ + ..++.++|.++ ||.+..
T Consensus 245 ~~aal--~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gI~~~~ 321 (356)
T cd06451 245 LREAL--DLILEEGLENRWARHRRLAKALREGLEALG-LKLLAKPELRSPTVTAVLVPEGVDGDEVVRRLMKRYNIEIAG 321 (356)
T ss_pred HHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHcC-CeeccCcccCCCceEEEECCCCCCHHHHHHHHHHhCCEEEec
Confidence 65665 555667999999999999999999999987 888742 223333 23443 2 78999999998 998754
Q ss_pred e----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 V----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ~----~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. .++.+|+|++.++|+||+++++++|..
T Consensus 322 g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~ 353 (356)
T cd06451 322 GLGPTAGKVFRIGHMGEATREDVLGVLSALEE 353 (356)
T ss_pred ccccccCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 2 246899999999999999999999974
No 91
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=99.87 E-value=2.8e-20 Score=212.25 Aligned_cols=314 Identities=12% Similarity=0.115 Sum_probs=203.2
Q ss_pred HHHHHHHHHHHHHHHhCCCcc--c-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcc-cHHHHHHCCcEE
Q 001989 630 YQEMFNNLGEWLCTITGFDSF--S-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGT-NPATAAMCGMKI 704 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~~--~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~-~~~~a~~~G~~v 704 (985)
+.+..+++++++++++|.+.. . ++.++|++++.+++.++. .+++++|+ ....|+. ....++..|+++
T Consensus 29 ~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~--------~~~~~vi~~~~~~~~~~~~~~a~~~g~~~ 100 (355)
T TIGR03301 29 FNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLV--------PRDGKLLVLINGAYGERLAKICEYLGIPH 100 (355)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhcc--------CCCCeEEEECCCchhhHHHHHHHHcCCce
Confidence 346688999999999999753 2 345677777654444321 24556554 5554443 334567889999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g 783 (985)
+.++.++++.+|+++++++++++ ++++.|+++++ |.+|.+. |+++|+++|+++|+++++|+++..+...+ +...++
T Consensus 101 ~~i~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~~G~~~-~~~~i~~l~~~~~~~livD~~~s~g~~~~-~~~~~~ 177 (355)
T TIGR03301 101 TDLNFSEYEPPDLNRIEEALAAD-PDITHVATVHHETTTGILN-PLEAIAKVARSHGAVLIVDAMSSFGAIPI-DIEELD 177 (355)
T ss_pred EEEecCCCCCCCHHHHHHHHHhC-CCceEEEEEecCCcccchh-HHHHHHHHHHHcCCEEEEEeccccCCccc-chhhcC
Confidence 99998877899999999999742 45677777776 4689998 89999999999999999999875432222 345678
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC---CCC-CCCCCCCCCCCcchhhhHHHHHHHHH
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI---PAP-EKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~---~~~-~~~~~~~~i~s~~~g~~~~~~~a~a~ 859 (985)
+|++++++||+++ |+||+|++++++++.+.+.........+. ..+ .+...+.... +.....++.+.
T Consensus 178 ~d~~~~s~~K~l~-----~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~-----~~~~~~a~~~a 247 (355)
T TIGR03301 178 VDALIASANKCLE-----GVPGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTP-----PTHTVYAFAQA 247 (355)
T ss_pred ccEEEecCCcccc-----cCCceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCC-----cHHHHHHHHHH
Confidence 9999999999984 45789999999876544331110000000 000 0000011111 11222333445
Q ss_pred HHHhcHHH-HHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC
Q 001989 860 IAMMGSKG-LTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 860 l~~lg~eG-l~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~ 937 (985)
+..+..+| +.+..++..++++++.+.|++ ++++.......... .+.+.++. ....+..++.++|.++||.+...
T Consensus 248 l~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~l~~~gi~i~~~ 323 (355)
T TIGR03301 248 LEELEAEGGVPARIARYRRNRELLVDGLRALGFQPLLPERWQSPI-IVSFLYPD---DPDFDFDDFYQELKERGFVIYPG 323 (355)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCc-EEEEECCC---CCcchHHHHHHHHHHCCEEEECC
Confidence 56565555 777777888899999999977 55543221111111 12334331 01135578999999999998654
Q ss_pred CCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 938 SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 938 ~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
.....+.+||+++.+++++|+++ +++.|+++
T Consensus 324 ~~~~~~~iRis~~~~~~~~~i~~--~~~~l~~~ 354 (355)
T TIGR03301 324 KLTLADTFRIGTIGEIDAADIER--LLEAIKDA 354 (355)
T ss_pred ccccccEEEEecCCCCCHHHHHH--HHHHHHhh
Confidence 32223789999999999999999 77777654
No 92
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=99.87 E-value=6.6e-20 Score=210.64 Aligned_cols=318 Identities=13% Similarity=0.134 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHHHHHhCCCc--c-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCC-CCccc-HHHHHHCCcEE
Q 001989 630 YQEMFNNLGEWLCTITGFDS--F-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVS-AHGTN-PATAAMCGMKI 704 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~--~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~-~Hg~~-~~~a~~~G~~v 704 (985)
+.+..+++++.+++++|.+. . .++.++|++|..+++.++. .++++|++... .++.. ...++..|+++
T Consensus 35 ~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~--------~~~~~vlv~~~~~~~~~~~~~~~~~g~~~ 106 (368)
T PRK13479 35 FNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLV--------PRDGKVLVPDNGAYGARIAQIAEYLGIAH 106 (368)
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhcc--------CCCCeEEEEeCCchHHHHHHHHHHcCCcE
Confidence 33567899999999999864 2 3456778877755544432 25567777543 23222 24467889999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g 783 (985)
+.+|.++++.+|++++++++++. +++++|++++|+ .+|... |+++|.++||++|++++||+++..+...+ +...++
T Consensus 107 ~~i~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~tG~~~-~~~~i~~l~~~~~~~livDa~~~~g~~~~-~~~~~~ 183 (368)
T PRK13479 107 VVLDTGEDEPPDAAEVEAALAAD-PRITHVALVHCETTTGILN-PLDEIAAVAKRHGKRLIVDAMSSFGAIPI-DIAELG 183 (368)
T ss_pred EEEECCCCCCCCHHHHHHHHHhC-CCCcEEEEEcccCcccccc-CHHHHHHHHHHcCCEEEEEcccccCCccc-cccccC
Confidence 99999877889999999999732 467788899985 699998 89999999999999999998875433222 345678
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC---CCCCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI---PAPEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~---~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
+|++++++|||++ |+||+|++++++++.+.+.........+. ..............+ ........+.+
T Consensus 184 ~d~~v~s~~K~l~-----g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~----~~~~~~l~~al 254 (368)
T PRK13479 184 IDALISSANKCIE-----GVPGFGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPP----THVVAAFYQAL 254 (368)
T ss_pred ceEEEecCccccc-----cCCCceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCc----HHHHHHHHHHH
Confidence 9999999999984 45689999999876544432110000000 000000000000111 11112223444
Q ss_pred HHhcHH-HHHHHHHHHHHHHHHHHHHhhc-cCCeeecCC-CCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC
Q 001989 861 AMMGSK-GLTEASKIAILNANYMAKRLEK-HYPILFRGV-NGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 861 ~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~-~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~ 937 (985)
..+..+ ++.+..++..++++++++.|++ ++++...+. ..+. .+.+.++. ..+.+..++.++|.++||.+...
T Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~l~~~L~~~gi~v~~g 329 (368)
T PRK13479 255 LELEEEGGVPARGARYANNQRTLVAGMRALGFEPLLDAEIQSPI--IVTFHAPA---DPAYDFKEFYERLKEQGFVIYPG 329 (368)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCcccCCchhcCce--EEEEECCC---CCCcCHHHHHHHHHHCCEEEecC
Confidence 444344 4677777888899999999987 565432210 0111 12232221 11246788999999999998543
Q ss_pred CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 938 SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 938 ~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
..+..+.+|++..-++|.||+++ +++.|+++++++
T Consensus 330 ~~~~~~~iRis~~~~~t~edi~~--~l~~L~~~l~~~ 364 (368)
T PRK13479 330 KLTQVDTFRIGCIGDVDAADIRR--LVAAIAEALYWM 364 (368)
T ss_pred CCCCCCEEEEecCCCCCHHHHHH--HHHHHHHHHHHc
Confidence 21223689999877899999999 889999988765
No 93
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=99.87 E-value=5e-20 Score=212.90 Aligned_cols=304 Identities=14% Similarity=0.144 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC--C
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT--D 710 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~--d 710 (985)
.+.++++.+++++|.+.+. +.++|++|+.+++.++. .++++|+++...|.+....++..|++++.+|+ +
T Consensus 64 ~~~~l~~~lA~~~g~~~~~-~~~g~t~a~~~al~~l~--------~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~ 134 (387)
T PRK09331 64 PIADFHEDLAEFLGMDEAR-VTHGAREGKFAVMHSLC--------KKGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGY 134 (387)
T ss_pred HHHHHHHHHHHHhCCCcEE-EeCCHHHHHHHHHHHhc--------CCCCEEEECCCchHHHHHHHHHcCCEEEEEeCccC
Confidence 4678999999999998654 45667777654444331 36789999988887776667889999999998 6
Q ss_pred CCCCCCHHHHHHHHHhc----CCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCc
Q 001989 711 AKGNINIEELRKAAEAN----RDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGAD 785 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~----~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~D 785 (985)
+++.+|++++++++++. .+++++|++++|+ .+|.+. |+++|+++||++|++++||++|..+..++ ....+|+|
T Consensus 135 ~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~-~l~~I~~la~~~g~~livD~a~~~g~~~~-~~~~~g~D 212 (387)
T PRK09331 135 PEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLA-DAKKVAKVAHEYGIPFLLNGAYTVGRMPV-DGKKLGAD 212 (387)
T ss_pred cCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccc-cHHHHHHHHHHcCCEEEEECCcccCCcCC-CHHHcCCC
Confidence 77899999999999742 1478999999996 499998 89999999999999999999986443332 33467899
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCc--cccCCCCCCCCCCCCCC-CCCCcchhhhHHHHHHHHHHHH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHP--VVSTGGIPAPEKSQPLG-TIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~--~g~~~~~~~~~~~~~~~-~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
++++|+||+|+ +++|+|++++++++.+.+.... +.. . .....+ +... .+ +..+++.+..
T Consensus 213 ~~~~s~~K~l~-----~~~~~G~l~~~~~~i~~~~~~~~~~~~------~-~~~~~~~~~~~----~~--~~~~~aal~~ 274 (387)
T PRK09331 213 FIVGSGHKSMA-----ASAPSGVLATTEEYADKVFRTSRKFGV------K-EVELLGCTLRG----AP--LVTLMASFPH 274 (387)
T ss_pred EEEeeCccccc-----CCCCEEEEEECHHHHhhcccccCCCcc------c-ceeeeceecCc----hH--HHHHHHHHHH
Confidence 99999999995 3458999999987665442110 000 0 000000 1110 11 1111222322
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCc---cccCCCCHHHHHHHHHHCCCccCCC
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGL---KNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~---~~~~g~~~~~v~~~L~~~Gi~~~~~ 937 (985)
+... + +..++..+++++++++|++ |+++....+.. .+.+.++.+.+ ....+.++.++.++|.++||..-.
T Consensus 275 ~~~~-~-~~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~- 349 (387)
T PRK09331 275 VVER-V-KRWDEEVKKARWFVDELEKIEGFKQLGEKPRN--HDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHGIK- 349 (387)
T ss_pred HHHH-H-HHHHHHHHHHHHHHHHHhcCCCEEEeccCcCc--CCeEEEeCCchhHHhhhccccchhHHHHHHHcCceEEc-
Confidence 2111 1 2344567788899999986 45543111111 11122332211 000123456799999999997311
Q ss_pred CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 938 SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 938 ~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+..+.++...+..+|++|+++ ++++|++++.++
T Consensus 350 --~~~~~i~ri~~~g~t~~di~~--l~~aL~~i~~~~ 382 (387)
T PRK09331 350 --PGATKEFKLSTYGLTWEQVEY--VADAFKEIAEKY 382 (387)
T ss_pred --cCCceEEEEEeccCCHHHHHH--HHHHHHHHHHhc
Confidence 112344444455589999999 888998887754
No 94
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=99.86 E-value=2.2e-19 Score=207.95 Aligned_cols=348 Identities=15% Similarity=0.107 Sum_probs=224.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCC-ccceecCCCCCCC-CCcHHHHHHHHhCCcccccc-CCChhhHhhhHHHHHHH
Q 001989 139 MKFSKFDEGLTESQMIEHMQKLASMNK-VYKSFIGMGYYNT-HVPPVILRNIMENPAWYTQY-TPYQAEIAQGRLESLLN 215 (985)
Q Consensus 139 ~~lp~~~~~~se~e~~~~~~~l~~~n~-~~~~~lG~g~y~~-~~p~~v~~~i~~~~~~~t~~-~pyq~e~sqg~l~~i~e 215 (985)
..|| +++++..|+++++...--... ....|.|. +.. ..|.+.. .+.+- +-+.+ +|.. +....+.+.+
T Consensus 15 ~~~p--~~~~~~~~~~~~~~~~iyld~~a~~~~~~~--~tt~~~p~~~~-~~~~~--l~~~~~np~s---~~~~~~le~~ 84 (431)
T TIGR01788 15 YRMP--EEEMPPDAAYQLIHDELSLDGNPRLNLATF--VTTWMEPEARK-LMDET--INKNMIDKDE---YPQTAEIENR 84 (431)
T ss_pred ccCC--CCCCCHHHHHHHHHHHhhhcCCcceeeeee--eCCCCCHHHHH-HHHHH--HhcCCCCccc---CccHHHHHHH
Confidence 4677 688999999999986533221 11122221 111 2444432 33221 11111 2322 2333488999
Q ss_pred HHHHHHHhcCCC-C-cce--eeccchHHHHHHHHHHhhhh--c-----C---CCCEEEEcCCCChhHHHHHHHhhcCCCe
Q 001989 216 FQTMIADLTGLP-M-SNA--SLLDEGTAAAEAMAMCNNIQ--K-----G---KKKTFIIASNCHPQTIDICITRADGFDI 281 (985)
Q Consensus 216 ~q~~ia~L~g~~-~-~~~--sl~~~~ta~~ea~~~a~~~~--~-----~---~g~~Vlv~~~~H~s~~~~~~~~a~~~gi 281 (985)
.++++|+++|++ . ..+ .+++|||.+...++.+.+.. . + .+.+|++++.+|+++.+.++. .|+
T Consensus 85 ~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~----lg~ 160 (431)
T TIGR01788 85 CVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARY----FDV 160 (431)
T ss_pred HHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHH----cCc
Confidence 999999999998 3 234 34688885443333222211 0 0 124799999999999988753 467
Q ss_pred EEEEeCc---------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhC------CcEEEEEe-cCcc-----c
Q 001989 282 KVVVSDL---------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHAN------GVKVVMAT-DLLA-----L 338 (985)
Q Consensus 282 ~v~~v~~---------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~------galliV~a-~~~~-----l 338 (985)
+++.+++ ++|++ ++++|.+|+++.. |.+|.++||++|+++|+++ |++++||+ +..+ .
T Consensus 161 ~v~~i~~d~~~~~vd~~~L~~~i~~~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~ 240 (431)
T TIGR01788 161 ELREVPMDPGRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVY 240 (431)
T ss_pred eeEEEecCCCceeeCHHHHHHHHhhCCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhC
Confidence 7766654 34556 7889999999986 6799999999999999999 99999953 3211 1
Q ss_pred cCCC-CCCcccceEEEecCcccc-ccCCCCCCcEEEEEEchh--hHhcC--CCceeeeeecCCCCcceeeeccccccccc
Q 001989 339 TILK-PPGELGADIVVGSAQRFG-VPMGYGGPHAAFLATSQE--YKRMM--PGRIVGVSIDSSGKPALRVAMQTREQHIR 412 (985)
Q Consensus 339 g~l~-~~~~~GaDi~v~s~k~lg-~P~~~GGP~~G~l~~~~~--~~~~l--p~~~vG~t~d~~g~~~~~l~l~tre~~ir 412 (985)
+-+. .....|+|.++.+++||+ +| +|+|+++++++ +.+.+ .+.++|.. ...+.+.. .|
T Consensus 241 ~~~~~~~~~~~~DSis~s~HK~~~~P-----~g~G~l~~r~~~~l~~~~~~~~~yl~~~-----~~~~t~~~------sR 304 (431)
T TIGR01788 241 PDLEWDFRLPRVKSINVSGHKYGLVY-----PGVGWVIWRDEEALPEELIFHVNYLGGD-----EPTFTLNF------SR 304 (431)
T ss_pred CCchhhcCCCCceEEEECchhccCCC-----CCcEEEEEeChHHcchhheecccccCCC-----CCCcceec------Cc
Confidence 1111 113468999999997664 44 35789999875 22222 11122210 00011111 11
Q ss_pred ccccCCCccchhHHHHHHHHHH--HHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-CCcceEEEecC-----C
Q 001989 413 RDKATSNICTAQALLANMAAMY--AVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCA-----D 484 (985)
Q Consensus 413 re~atsni~t~~~l~a~~aa~~--l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~-----~ 484 (985)
+ +.-++ .+| +..+|.+|++++.+++.++++||.++|++.++++++.+ +.++.++|+.+ +
T Consensus 305 ~-----------g~~al--~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~Fr~~~~~~~~ 371 (431)
T TIGR01788 305 P-----------ANQVI--AQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAFKLKDDADPG 371 (431)
T ss_pred h-----------HHHHH--HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEEEEeCCCCCCC
Confidence 1 11111 133 57889999999999999999999999999977999865 66777777754 2
Q ss_pred --HHHHHHHHHHcCceeeee-c------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 485 --AHAIASAAYKIEMNLRVV-D------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 --~~~v~~~L~~~GI~~~~~-~------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..++.++|.++||.+... . .-.+|+++....+++.+|+|++.|++
T Consensus 372 ~~~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~ 425 (431)
T TIGR01788 372 YTLYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEA 425 (431)
T ss_pred cCHHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHH
Confidence 678999999999965321 1 13589999999999999999999985
No 95
>PRK14012 cysteine desulfurase; Provisional
Probab=99.86 E-value=1.4e-19 Score=210.63 Aligned_cols=290 Identities=15% Similarity=0.138 Sum_probs=205.9
Q ss_pred HHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 210 LESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 210 l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
-+.+.++++.+|+++|+++.++.+++|+|.++..++.++. ...++||+|+++..+|+++...++.+ +..|++++.++.
T Consensus 48 ~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~-~~~g~~~~~v~~ 126 (404)
T PRK14012 48 EEAVDIARNQIADLIGADPREIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQL-EREGFEVTYLDP 126 (404)
T ss_pred HHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHH-HhCCCEEEEEcc
Confidence 3678899999999999998889999999987776665432 11247899999999999999988764 346888888754
Q ss_pred --------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecCc
Q 001989 289 --------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSAQ 357 (985)
Q Consensus 289 --------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~k 357 (985)
+++++ ++++|++|+++++ |.+|.+.|+++|.++||++|+++++|+ .+++|... +..++++|+++++++
T Consensus 127 ~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~-a~~~g~~~~~~~~~~~D~~~~s~~ 205 (404)
T PRK14012 127 QSNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDA-AQSVGKVPIDLSKLKVDLMSFSAH 205 (404)
T ss_pred CCCCcCCHHHHHHhcCCCCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEc-chhcCCcccCcccCCCCEEEEehh
Confidence 35666 7889999999886 789999999999999999999999953 44666543 456789999999995
Q ss_pred cccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHH
Q 001989 358 RFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVY 437 (985)
Q Consensus 358 ~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~ 437 (985)
|+.+| +|.|+++++++...++.+.+.|.. . ..+.+.||.++ ..+.++.+++-+.
T Consensus 206 K~~gp-----~g~G~l~~~~~~~~~~~~~~~g~~------~-----------~~~~~~gt~~~---~~~~~l~~al~~~- 259 (404)
T PRK14012 206 KIYGP-----KGIGALYVRRKPRVRLEAQMHGGG------H-----------ERGMRSGTLPT---HQIVGMGEAARIA- 259 (404)
T ss_pred hccCC-----CceEEEEEecCCCCCCCceecCCC------c-----------cCCccCCCcCH---HHHHHHHHHHHHH-
Confidence 45333 357899998765444433333311 0 01234567776 3455555665222
Q ss_pred hCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-C-C-cce--EEEecCCHHHHHHHHHHcCceee----e-------
Q 001989 438 HGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-P-F-FDT--VKVKCADAHAIASAAYKIEMNLR----V------- 501 (985)
Q Consensus 438 ~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~-~-~~~--~~~~~~~~~~v~~~L~~~GI~~~----~------- 501 (985)
..+++++.++..++++++.+.|+++.++++.+. + . ... +.|...+..++.+.|.+.+|... .
T Consensus 260 --~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~g~~~~~~~~~~~~ 337 (404)
T PRK14012 260 --KEEMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVEGESLIMALKDLAVSSGSACTSASLEPSY 337 (404)
T ss_pred --HhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcCHHHHHHhCCCeEEEchhhhCCCCCCCCH
Confidence 235677889999999999999998754776532 1 1 122 34443335667777754333210 0
Q ss_pred ----------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 ----------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ----------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
...+.+|+|++.++|++|+|+++++|++
T Consensus 338 ~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~ 375 (404)
T PRK14012 338 VLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRK 375 (404)
T ss_pred HHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 1147899999999999999999999985
No 96
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=99.85 E-value=1.6e-19 Score=207.02 Aligned_cols=322 Identities=14% Similarity=0.118 Sum_probs=214.7
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCc--ceeeccchHHHHHHHHHHh
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMS--NASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~--~~sl~~~~ta~~ea~~~a~ 248 (985)
++.| |..+++.+.++ ..++ | ..+.+ ...+.+.+.++.+++|+|+++. ++.++.|+|.++++++.++
T Consensus 7 ~~pg--p~~~~~~v~~~-~~~~-~----~~~~~----~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l 74 (363)
T TIGR02326 7 LTPG--PLTTSRTVKEA-MLFD-W----CTWDS----DYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSA 74 (363)
T ss_pred ecCC--CCCCCHHHHHH-hCCC-C----CCCCh----HHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhc
Confidence 3555 55677777633 3332 2 12222 3456788899999999999764 6888999999988887765
Q ss_pred hhhcCCCCE-EEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cC--CCEeEEEEEcC-CCCeeeccH
Q 001989 249 NIQKGKKKT-FIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KS--GDVCGVLVQYP-GTEGEVLDY 315 (985)
Q Consensus 249 ~~~~~~g~~-Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~--~~t~~V~v~~p-n~~G~v~di 315 (985)
. . ++++ |+++...|+.... ..++..|++++.++. +++++ +. ++++.|.+.++ |++|.+.|+
T Consensus 75 ~-~--~~~~vlv~~~~~~~~~~~---~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~i 148 (363)
T TIGR02326 75 V-P--KDGKLLVVINGAYGARIV---QIAEYLGIPHHVVDTGEVEPPDVVEVEAILAADPAITHIALVHCETTTGILNPI 148 (363)
T ss_pred C-C--CCCeEEEEeCChhhHHHH---HHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCcH
Confidence 3 2 4555 5567778876532 224457888877654 34555 44 35666777664 889999999
Q ss_pred HHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeec
Q 001989 316 GDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSID 393 (985)
Q Consensus 316 ~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d 393 (985)
++|+++||++|++++||+ .+++|... +..+||+|++++++ |+|+ |+||+|+++++++.++++.+...+
T Consensus 149 ~~I~~l~~~~g~~livD~-~~~~g~~~~~~~~~~~D~~~~s~~K~l~-----~p~G~G~l~~~~~~~~~~~~~~~~---- 218 (363)
T TIGR02326 149 EAVAKLAHRHGKVTIVDA-MSSFGGIPIDIAELHIDYLISSANKCIQ-----GVPGFGFVIARQAELAACKGNARS---- 218 (363)
T ss_pred HHHHHHHHHcCCEEEEEc-cccccCcccchhhcCccEEEecCccccc-----cCCcceEEEECHHHHHHhhcCCCc----
Confidence 999999999999999963 45666542 44679999999998 6674 446789999999887765332211
Q ss_pred CCCCcceeeeccccccccccccc-CCCccchhHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHHHHHHhcCCCeEEcC
Q 001989 394 SSGKPALRVAMQTREQHIRRDKA-TSNICTAQALLANMAAMYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKLGTVEVQG 471 (985)
Q Consensus 394 ~~g~~~~~l~l~tre~~irre~a-tsni~t~~~l~a~~aa~~l~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~ 471 (985)
+.+++....+.....++ +.+..+.....++.+++ ..+..+ |++++.+++.++.+++++.|+++| ++++.
T Consensus 219 ------~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al--~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~ 289 (363)
T TIGR02326 219 ------LSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQAL--LELEKEGGVAARHQRYQQNQKTLVAGMRALG-FEPLL 289 (363)
T ss_pred ------eeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHH--HHHHHhhCHHHHHHHHHHHHHHHHHHHHHcC-Ceecc
Confidence 22221100000000011 11111224555665555 333333 689999999999999999999997 88764
Q ss_pred CC--Ccce-EEEecCC-----HHHHHHHHHHcCceeeeec---CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 472 LP--FFDT-VKVKCAD-----AHAIASAAYKIEMNLRVVD---SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 472 ~~--~~~~-~~~~~~~-----~~~v~~~L~~~GI~~~~~~---~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++ ..+. +.|..+. ..++.+.|.++||.++... .+.+|++++.++|.+|+++++++|+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~ 358 (363)
T TIGR02326 290 DDEIQSPIITSFYSPEDPDYRFADFYQRLKEQGFVIYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGK 358 (363)
T ss_pred CcccCCceEEEEECCCCCCCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 32 2222 2344332 5789999999999885431 46899999889999999999999974
No 97
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=99.85 E-value=2.1e-19 Score=205.22 Aligned_cols=325 Identities=13% Similarity=0.035 Sum_probs=220.9
Q ss_pred CCCCCCCCCcHHHHHHHHhCCc--cccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCc-ceeec-cchHHHHHHHHHH
Q 001989 172 GMGYYNTHVPPVILRNIMENPA--WYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMS-NASLL-DEGTAAAEAMAMC 247 (985)
Q Consensus 172 G~g~y~~~~p~~v~~~i~~~~~--~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~-~~sl~-~~~ta~~ea~~~a 247 (985)
+.| |..+|+.+.+++. .+. .+ ...-..++. .+.+.+.++.+++|+|++.. ++.++ .++|.++++++.+
T Consensus 8 ~pG--P~~~~~~v~~a~~-~~~~~~~-~~~hr~~~f----~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~ 79 (361)
T TIGR01366 8 GSG--PSKVRLEQLQALT-TTAASLF-GTSHRQAPV----KNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFG 79 (361)
T ss_pred cCC--CcCCCHHHHHHHH-hcCcccc-ccCcCChHH----HHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHh
Confidence 455 5567788764433 221 11 012233332 47888999999999998644 67775 5599999988876
Q ss_pred hhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---hhhc-cCCCEeEEEEEc-CCCCeeeccHHHHHHHH
Q 001989 248 NNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK---DIDY-KSGDVCGVLVQY-PGTEGEVLDYGDFIKNA 322 (985)
Q Consensus 248 ~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~---~l~~-l~~~t~~V~v~~-pn~~G~v~di~~I~~~a 322 (985)
+- .++.++++.+.|.+....+..++...+ ++.+++.+ +++. ++++|++|++++ +|.+|.+.|+++| +
T Consensus 80 l~----~~~~l~i~~G~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lV~~~h~et~tG~~~pi~~I---~ 151 (361)
T TIGR01366 80 LI----EKKSLHLSFGEFSSKFAKAVKLAPWLG-EPIIVTADPGSAPEPQADPGVDVIAWAHNETSTGVAVPVRRP---E 151 (361)
T ss_pred cc----cccccEEecCHHHHHHHHHHHhhhccC-CceEEecCCCCCCCCccCCCCCEEEEcccCCccceecccccc---c
Confidence 52 224456677888777666644332223 44544432 3444 677899998876 6999999999998 4
Q ss_pred HhCCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcce
Q 001989 323 HANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPAL 400 (985)
Q Consensus 323 ~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~ 400 (985)
|++|++++||+ ..++|... +.. .+|++++++ |.|+.| ||++++++++++++++.+...|.. +.+ +
T Consensus 152 ~~~g~~~iVDa-vqs~g~~~idv~--~~D~~~~s~~K~lg~~-----~Gl~~~~~s~~~~~~~~~~~~~~~----~~p-~ 218 (361)
T TIGR01366 152 GSDDALVVIDA-TSGAGGLPVDIA--ETDVYYFAPQKNFASD-----GGLWLAIMSPAALERIEAIAASGR----WVP-E 218 (361)
T ss_pred ccCCCeEEEEc-CccccCCCCCHH--HCCEEEEEchhhcCCC-----CceEEEEECHHHHhhhhcccCCCC----CCc-h
Confidence 89999999954 34565442 223 289999999 545433 368889999999888764443310 111 2
Q ss_pred eeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHHHHHHhcCCCeEEcC-CC--Cc-
Q 001989 401 RVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKLGTVEVQG-LP--FF- 475 (985)
Q Consensus 401 ~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~~--~~- 475 (985)
.+++... ...+.+.+|.|......++++.+++ .++..+ |++.+.+++.+++++++++|.++++++++. .+ ..
T Consensus 219 ~~d~~~~-~~~~~~~~t~~tp~i~~i~~l~~al--~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~ 295 (361)
T TIGR01366 219 FLSLPTA-VDNSLKNQTYNTPAIATLALLAEQI--DWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQ 295 (361)
T ss_pred hhhHHHH-HhccccCCCCCCchHHHHHHHHHHH--HHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhccc
Confidence 3443222 1123456888887778888888887 566566 699999999999999999999997566652 21 11
Q ss_pred --ceEEEecCC--HHHHHHHHHHcCceeee----ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 476 --DTVKVKCAD--AHAIASAAYKIEMNLRV----VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 476 --~~~~~~~~~--~~~v~~~L~~~GI~~~~----~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..|++. ++ ..++.+.|.++||.+.. +..+.+|+|.+.++|.+|||+|+++|++
T Consensus 296 ~v~~v~~~-~g~~~~~v~~~L~~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~ 356 (361)
T TIGR01366 296 VVGTIDFV-DDIDAATVAKILRANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDW 356 (361)
T ss_pred ceEEEECC-CccCHHHHHHHHHHCCCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHH
Confidence 234552 33 88999999999998743 1246799999999999999999999985
No 98
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=99.85 E-value=1.6e-19 Score=189.68 Aligned_cols=307 Identities=15% Similarity=0.119 Sum_probs=225.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHH-HhhhhcCCCCEEEEcC-CCChhHHHHHHHhhcCCC--eE
Q 001989 207 QGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAM-CNNIQKGKKKTFIIAS-NCHPQTIDICITRADGFD--IK 282 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~-a~~~~~~~g~~Vlv~~-~~H~s~~~~~~~~a~~~g--i~ 282 (985)
+.|...=...-..+|-|+|+...++...++.+..+.-.+. +++.. ++++||+++ ..+|+-..+...+++-.+ .+
T Consensus 72 ~~W~~lp~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aalr~~--~~r~vIv~E~~~fpTdly~a~g~~~~~~~~~~ 149 (407)
T COG3844 72 ADWFDLPERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAALRPQ--EGRRVIVSEGDNFPTDLYIAEGLADLLGIGYD 149 (407)
T ss_pred CchhhchhHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHhccC--CCceEEeecCCCCCcchhhhcchhhhhccccc
Confidence 3444444455578999999999999888888776655554 34433 577787777 578988877765554333 23
Q ss_pred EEEe-Cchhhhc-cCCCEeEEEEEcCCC-CeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecC-c
Q 001989 283 VVVS-DLKDIDY-KSGDVCGVLVQYPGT-EGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-Q 357 (985)
Q Consensus 283 v~~v-~~~~l~~-l~~~t~~V~v~~pn~-~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k 357 (985)
+..+ .++++++ ++++++.|++++.|+ +|...|+.+|.++||++|++++.+ -.++.|.+. .-..+|+|+.++++ |
T Consensus 150 ~~~~~~P~~~~~~~~dd~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wD-LAHsaGavp~~Lh~~gaDfaigcsyK 228 (407)
T COG3844 150 LEGVIAPRALEEAITDDVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWD-LAHSAGAVPVDLHAAGADFAIGCSYK 228 (407)
T ss_pred ceeeeChHHHHHhhccceEEEEeccccccccceeeHHHHHHHHHhcCceEEee-hhcccCCcceeecccCCCeeeeeece
Confidence 3222 3467777 899999999999986 899999999999999999998884 245777553 44789999999999 6
Q ss_pred cccccCCCCCCcE-EEEEEchhhHhcCCCceeeeeecCCCCcceeeecc-cccccccccccCCCccchhHHHHHHHHH-H
Q 001989 358 RFGVPMGYGGPHA-AFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQ-TREQHIRRDKATSNICTAQALLANMAAM-Y 434 (985)
Q Consensus 358 ~lg~P~~~GGP~~-G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~-tre~~irre~atsni~t~~~l~a~~aa~-~ 434 (985)
.| .||||+ +++++.+++.+..-+++.||.. +.++ |.+.-. +--.+++| +.|+++..+.+++-- -
T Consensus 229 YL-----NgGPGapa~l~v~~~h~e~~~~~lsgW~g--ha~p-f~m~~~y~p~~ga~r-----f~~gt~~V~s~aal~~a 295 (407)
T COG3844 229 YL-----NGGPGAPAGLFVAPRHRERSWPPLSGWWG--HARP-FAMEEVYAPGPGARR-----FLCGTQPVLSLAALEGA 295 (407)
T ss_pred ec-----cCCCCCceeEEeccccccccccccccccC--CCCc-chhhhccCcCccccc-----eeeCCcchhhhHHHhhh
Confidence 55 477876 9999999988887788899743 1233 544311 11245554 455555554432211 1
Q ss_pred HHHhCcchHHHHHHHHHHHHHHHHHHHhcC-C--CeEEcCC----CCcceEEEecCCHHHHHHHHHHcCceeeeecCCeE
Q 001989 435 AVYHGPEGLKTIAQRVHGLAGTFALGLKKL-G--TVEVQGL----PFFDTVKVKCADAHAIASAAYKIEMNLRVVDSNTV 507 (985)
Q Consensus 435 l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~-g--~~~~~~~----~~~~~~~~~~~~~~~v~~~L~~~GI~~~~~~~~~l 507 (985)
+.....-++.++.+++..+++|+.+.++.. + ++++..+ .+...+++..+.+.+|.+.|.++||......++.+
T Consensus 296 LDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp~~~~V~qaLi~rGVigD~R~P~vl 375 (407)
T COG3844 296 LDIFADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHPHGYQVMQALIDRGVIGDFREPDVL 375 (407)
T ss_pred hhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecCcHHHHHHHHHHcCccccccCCCee
Confidence 466677789999999999999999998875 2 3677643 23456888888899999999999997655568999
Q ss_pred EEEecc-CCCHHHHHHHHHHHhC
Q 001989 508 TASFDE-TTTLEDVDKLFIVFAG 529 (985)
Q Consensus 508 ris~t~-~~t~edId~li~aL~~ 529 (985)
|+.+|+ |++-+|+-..+++|.+
T Consensus 376 RfgftPlY~~~~DVw~AV~~L~e 398 (407)
T COG3844 376 RFGFTPLYVSFVDVWDAVDALEE 398 (407)
T ss_pred eecCccceechhHHHHHHHHHHH
Confidence 999998 7899999888888874
No 99
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.84 E-value=7.3e-19 Score=200.83 Aligned_cols=263 Identities=11% Similarity=0.088 Sum_probs=193.7
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhh-hcCCC-CEEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001989 206 AQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI-QKGKK-KTFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 206 sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~-~~~~g-~~Vlv~~~~H~s~~~~~~~~a~~~gi~v 283 (985)
+....+.+.++++.+++++|+++.++.+++|+|.+++.++.++.. ..+++ ++|+++..+||++...++.+ +..|+++
T Consensus 37 ~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~~~-~~~G~~v 115 (353)
T TIGR03235 37 GHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRAL-ERNGFTV 115 (353)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhcccCCCCeeeEcccccHHHHHHHHHH-HhcCCEE
Confidence 334557788999999999999988899999999887776665421 11244 78999999999999998764 4569999
Q ss_pred EEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEE
Q 001989 284 VVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIV 352 (985)
Q Consensus 284 ~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~ 352 (985)
+.++. +++++ +++++++|+++++ |.+|.+.|+++|+++||++|++++||. .+++|... +..++|+|++
T Consensus 116 ~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~-a~~~g~~~~~~~~~~~D~~ 194 (353)
T TIGR03235 116 TYLPVDESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDA-AQVVGKITVDLSADRIDLI 194 (353)
T ss_pred EEEccCCCCcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEc-hhhcCCccccccccCCCEE
Confidence 88764 35666 7788999999987 789999999999999999999999953 45666543 3467899999
Q ss_pred EecCccccccCCCCCCcEEEEEEchhhHhc--CCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHH
Q 001989 353 VGSAQRFGVPMGYGGPHAAFLATSQEYKRM--MPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANM 430 (985)
Q Consensus 353 v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~--lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~ 430 (985)
+++++|+.+| ||+|+++++++.... +.+.+.|. . +..+.+.+|+|+ ..+.++.
T Consensus 195 ~~s~~K~~gp-----~g~g~l~~~~~~~~~~~~~~~~~~~------~-----------~~~~~~~gt~~~---~~~~al~ 249 (353)
T TIGR03235 195 SCSGHKIYGP-----KGIGALVIRKRGKPKAPLKPIMFGG------G-----------QERGLRPGTLPV---HLIVGMG 249 (353)
T ss_pred EeehhhcCCC-----CceEEEEEccCcccccccCceeeCC------C-----------CcCccccCCCCh---HHHHHHH
Confidence 9999545434 468999999875432 33322221 0 112345688887 4566666
Q ss_pred HHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC--C-cceEEEecCC--HHHHHHHHHHcCceee
Q 001989 431 AAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP--F-FDTVKVKCAD--AHAIASAAYKIEMNLR 500 (985)
Q Consensus 431 aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~--~-~~~~~~~~~~--~~~v~~~L~~~GI~~~ 500 (985)
+++ .++ .+|++++.+++.+++++++++|++.| ++++.++ . ...++|..++ ++++.+.|.+ ||.++
T Consensus 250 ~al--~~~-~~~~~~~~~~~~~l~~~l~~~l~~~g-~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~L~~-~i~v~ 319 (353)
T TIGR03235 250 EAA--EIA-RRNAQAWEVKLRAMRNQLRDALQTLG-VKLNGDPAETIPHILNFSIDGVNSEALIVNLRA-DAAVS 319 (353)
T ss_pred HHH--HHH-HhhHHHHHHHHHHHHHHHHHHhccCC-eEEeCCcccccCCEEEEEeCCcCHHHHHHHHhC-CeEEE
Confidence 666 333 35889999999999999999999877 9987432 1 2245566565 7889999965 77664
No 100
>PLN03032 serine decarboxylase; Provisional
Probab=99.84 E-value=1e-18 Score=198.32 Aligned_cols=282 Identities=12% Similarity=0.038 Sum_probs=194.9
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcc--eeeccchHHHHHHHHHHhhhhc--CCCCEEEEcCCCChhHHHHHHHhhcCCCe
Q 001989 206 AQGRLESLLNFQTMIADLTGLPMSN--ASLLDEGTAAAEAMAMCNNIQK--GKKKTFIIASNCHPQTIDICITRADGFDI 281 (985)
Q Consensus 206 sqg~l~~i~e~q~~ia~L~g~~~~~--~sl~~~~ta~~ea~~~a~~~~~--~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi 281 (985)
...+.+.+.+..+++|+|+|+++.. ..+++|||.+. ++++...+ .++.+|+++..+|+|+.+.++.+ |+
T Consensus 61 g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaN---l~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~~l----g~ 133 (374)
T PLN03032 61 GVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGN---LHGILVGREVFPDGILYASRESHYSVFKAARMY----RM 133 (374)
T ss_pred CccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHH---HHHHHHHHHhCCCcEEEeCCCceeHHHHHHHHc----CC
Confidence 3467889999999999999998765 48889998544 44332211 24568999999999999997653 34
Q ss_pred EEEEeC--------chhhhc-cCC---CEeEEEEEcC-CCCeeeccHHHHHHHHHhCC-----cEEEEEecCccccCCC-
Q 001989 282 KVVVSD--------LKDIDY-KSG---DVCGVLVQYP-GTEGEVLDYGDFIKNAHANG-----VKVVMATDLLALTILK- 342 (985)
Q Consensus 282 ~v~~v~--------~~~l~~-l~~---~t~~V~v~~p-n~~G~v~di~~I~~~a~~~g-----alliV~a~~~~lg~l~- 342 (985)
+++.++ +++|++ +++ ++.+|+++.. |.+|.++|+++|+++|+++| ++++||+ .++.+.+.
T Consensus 134 ~~~~V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDa-A~gg~~~p~ 212 (374)
T PLN03032 134 EAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDG-ALFGLMMPF 212 (374)
T ss_pred CCeEeeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEc-cchhhhhhc
Confidence 444443 356766 654 4778888876 67999999999999999997 4899953 12222211
Q ss_pred ---C---CCcccceEEEecCccccc-cCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccc
Q 001989 343 ---P---PGELGADIVVGSAQRFGV-PMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDK 415 (985)
Q Consensus 343 ---~---~~~~GaDi~v~s~k~lg~-P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~ 415 (985)
. ....++|.++.+++|+++ |++ +|++++++++++.+... ..|.-.. +
T Consensus 213 ~~~~~~~~~~~~vDSis~s~HK~~g~P~g-----~G~ll~r~~~~~~~~~~-----------~~Yl~~~----d------ 266 (374)
T PLN03032 213 VSRAPEVTFRKPIGSVSVSGHKFLGCPMP-----CGVALTRKKHVKALSQN-----------VEYLNSR----D------ 266 (374)
T ss_pred cCCCcccCCCcCCcEEEECcccccCCCcC-----eEEEEEEchhhHhhccC-----------CcccCCC----C------
Confidence 0 123589999999966644 754 68899998777655210 0011000 0
Q ss_pred cCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCCHHHHHHHHHHc
Q 001989 416 ATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKI 495 (985)
Q Consensus 416 atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~ 495 (985)
..-.||-.+..++.....+..+|.+|++++.+++.++++|+.++|++.| ++++..|..++|+|..+.... +. +
T Consensus 267 -~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~~-~~~~~~p~~~~V~f~~~~~~~----~~-~ 339 (374)
T PLN03032 267 -ATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEAG-LTCRLNELSSTVVFERPMDEA----FI-K 339 (374)
T ss_pred -CcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCC-CcEEECCCceEEEEcCCCcHh----Hh-h
Confidence 0001111122222222236899999999999999999999999999987 887756666678887664222 22 5
Q ss_pred CceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 496 EMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 496 GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
||.+.. .++.++++++..+|++.||+|++.|++
T Consensus 340 ~w~l~~-~~~~~hi~vm~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 340 KWQLAC-EGDIAHVVVMPNVTVEKLDEFVEELVE 372 (374)
T ss_pred eeeecc-cCCEEEEEECCCCCHHHHHHHHHHHhc
Confidence 787775 346899999999999999999999975
No 101
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=99.84 E-value=9.8e-19 Score=199.58 Aligned_cols=295 Identities=14% Similarity=0.120 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHHHhcCCCCc--ceeeccchHHHHHHHHHHhhhhcCCCCEE-EEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 210 LESLLNFQTMIADLTGLPMS--NASLLDEGTAAAEAMAMCNNIQKGKKKTF-IIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 210 l~~i~e~q~~ia~L~g~~~~--~~sl~~~~ta~~ea~~~a~~~~~~~g~~V-lv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
.+.+.++++.+++++|+++. .+.++.+||.++++++.++. . +++++ +++...|++.... .++..|.+++.+
T Consensus 30 ~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~-~--~~~~vi~~~~~~~~~~~~~---~a~~~g~~~~~i 103 (355)
T TIGR03301 30 NDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLV-P--RDGKLLVLINGAYGERLAK---ICEYLGIPHTDL 103 (355)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhcc-C--CCCeEEEECCCchhhHHHH---HHHHcCCceEEE
Confidence 36677899999999999865 46678899988888776642 2 45665 5666677663322 234468777776
Q ss_pred Cc--------hhhhc-cC--CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEE
Q 001989 287 DL--------KDIDY-KS--GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVV 353 (985)
Q Consensus 287 ~~--------~~l~~-l~--~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v 353 (985)
+. +++++ +. ++++.|++.++ |.+|.+.|+++|+++||++|++++||+ .+++|... +..++|+|+++
T Consensus 104 ~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~-~~s~g~~~~~~~~~~~d~~~ 182 (355)
T TIGR03301 104 NFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDA-MSSFGAIPIDIEELDVDALI 182 (355)
T ss_pred ecCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEe-ccccCCcccchhhcCccEEE
Confidence 53 34555 53 45667776665 779999999999999999999999964 55666432 34678999999
Q ss_pred ecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 354 GSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 354 ~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
+++ |+|+ |+||+|++++++++++.+.++. +.+.+++..-.+...+...+.+..+...+.++.++
T Consensus 183 ~s~~K~l~-----~~~G~g~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~a 247 (355)
T TIGR03301 183 ASANKCLE-----GVPGFGFVIARRDLLEASAGNA----------RSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQA 247 (355)
T ss_pred ecCCcccc-----cCCceeEEEECHHHHHHhhCCC----------CCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHH
Confidence 998 6664 4567899999999887764221 11222221100111111122222222344455455
Q ss_pred HHHHHhCcch-HHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC-Ccc--eEEEecCC-----HHHHHHHHHHcCceeeeec
Q 001989 433 MYAVYHGPEG-LKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-FFD--TVKVKCAD-----AHAIASAAYKIEMNLRVVD 503 (985)
Q Consensus 433 ~~l~~~g~~G-l~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~~--~~~~~~~~-----~~~v~~~L~~~GI~~~~~~ 503 (985)
+ ..+..+| +++..++..++.+++++.|+++| ++++.++ ..+ .+.+..+. ..++.++|.++||.+....
T Consensus 248 l--~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~ 324 (355)
T TIGR03301 248 L--EELEAEGGVPARIARYRRNRELLVDGLRALG-FQPLLPERWQSPIIVSFLYPDDPDFDFDDFYQELKERGFVIYPGK 324 (355)
T ss_pred H--HHHHHcccHHHHHHHHHHHHHHHHHHHHHcC-CeeecCCCCCCCcEEEEECCCCCcchHHHHHHHHHHCCEEEECCc
Confidence 4 4444555 88899999999999999999987 8865322 111 23454442 4689999999999885532
Q ss_pred ---CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 504 ---SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 ---~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.+|++++.++|++|+++++++|+.
T Consensus 325 ~~~~~~iRis~~~~~~~~~i~~~~~~l~~ 353 (355)
T TIGR03301 325 LTLADTFRIGTIGEIDAADIERLLEAIKD 353 (355)
T ss_pred cccccEEEEecCCCCCHHHHHHHHHHHHh
Confidence 26899999999999999999999974
No 102
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=99.84 E-value=5.9e-19 Score=203.26 Aligned_cols=360 Identities=16% Similarity=0.135 Sum_probs=227.7
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCccccccc---ccccccc---------ccCCCCchhhh
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMP---VTWPSFA---------NIHPFAPADQA 627 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~---~~~~~f~---------~~~p~~p~e~~ 627 (985)
.+| +.|+++.+|...|.+|+..|..-..+.+..| ...-... +.+.+|. ++.-.|| +.
T Consensus 29 ~~p--~~g~~~~~i~~~l~~l~~~~~~~~~~~~~~g-------ere~rv~~~~~~~~~~~~~hgigr~~~l~~~q~-ka- 97 (444)
T TIGR03531 29 KIP--EEGWDDETIELFLHELSVMDTNNFPNNVGVG-------EREGRVFSKLVARRHYRFCHGIGRSGDLVAPQP-KA- 97 (444)
T ss_pred cCC--ccCCCHHHHHHHHHHHhcCCcCCCccccCcC-------cccceeechhhhhcccceecCCCCcccccccCc-cc-
Confidence 568 6999999999999999998844222222222 1111111 1111221 1223444 22
Q ss_pred hh---HHHHHHHHHHHHHHHhCCCc--cceecCcHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCC
Q 001989 628 QG---YQEMFNNLGEWLCTITGFDS--FSLQPNAGA-AGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCG 701 (985)
Q Consensus 628 ~G---~~~~~~e~~~~la~l~G~~~--~~~~~~sGa-~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G 701 (985)
.| ...+..++++++++++|.+. ..+.+++|+ .+...++.+++. ++ .++++||++...|.+..+++...|
T Consensus 98 ~gss~~~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~----~~-~~gd~VI~p~~th~S~~kAi~~~G 172 (444)
T TIGR03531 98 AGSSLLYKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRH----KR-PKAKYVIWPRIDQKSCIKAISTAG 172 (444)
T ss_pred cCccHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCC----cC-CCCCEEEEECcChHHHHHHHHHcC
Confidence 23 66788899999999999983 234445555 333333333321 11 146889999888888888899999
Q ss_pred cEEEEEcC---CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCc--cccccCHHHHHHHHHHcCCEEEEEccccccccCC
Q 001989 702 MKIVSVGT---DAKGNINIEELRKAAEANRDNLSTLMVTYPSTH--GVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL 776 (985)
Q Consensus 702 ~~vv~v~~---d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~--G~i~~di~eI~~la~~~galliVD~a~~~~~~~l 776 (985)
++++.+++ ++++.+|+++|+++|+...+++.++++.+|+++ |..+ |+++|+++|+++|+++|+|+|+......+
T Consensus 173 ~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~d-dL~eIa~la~k~gI~lIvDaAyg~~~~~~ 251 (444)
T TIGR03531 173 FEPRVIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPD-DIEEIAKICANYDIPHIVNNAYGLQSNKY 251 (444)
T ss_pred CeEEEeeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchh-CHHHHHHHHHHcCCEEEEECcCcCcChhh
Confidence 99999995 345899999999999832225667777777654 4666 99999999999999999999985311111
Q ss_pred C---CC-CccC-CcEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhh
Q 001989 777 T---SP-GYIG-ADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 777 ~---~p-g~~g-~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~ 850 (985)
. .. ...| +|++++++||+|.+|.+ +|+++++ +++.+.+.....+ ....
T Consensus 252 ~~~~~~g~~~Grad~vv~s~hK~l~~pg~-----Gg~I~~~d~el~~~i~~~y~g---------------~~~~------ 305 (444)
T TIGR03531 252 MELINKAIKVGRVDAVVSSTDKNFMVPVG-----GAIIYSFDENFIQEISKSYPG---------------RASA------ 305 (444)
T ss_pred hhhhhccccccCCCeEEEeCccCCCCCCC-----EEEEEECCHHHHHHHHHhccC---------------CCCC------
Confidence 0 01 1233 79999999999987621 4566664 4444433211000 0011
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-----cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHH
Q 001989 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-----HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAK 925 (985)
Q Consensus 851 ~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-----g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~ 925 (985)
.....+|+.+..+|.+|++++.++..++++++.++|++ +..++ ..+..+.. +.+.+..+ .+.+...+..
T Consensus 306 s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~-~~~~n~is--~~~~~~~~---~~~~~~~~g~ 379 (444)
T TIGR03531 306 SPSLDVLITLLSLGSKGYLELLKERKEMYKYLKELLQKLAERHGERLL-DTPENPIS--SAMTLSTL---KGKDPTMLGS 379 (444)
T ss_pred hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEee-cCCCCcee--EEEecccc---cccCHHHHHH
Confidence 12345788889999999999999999999999999975 23332 22222222 33444322 1456788888
Q ss_pred HHHHCCCccCC-----C-------C---CCC------CCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 926 RLMDYGFHGPT-----M-------S---WPV------PGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 926 ~L~~~Gi~~~~-----~-------~---~p~------~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
.|..+++-... - . |+. -..+-++...-.+++|||. |++.|+++
T Consensus 380 ~l~~~~v~g~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~--~~~~l~~~ 443 (444)
T TIGR03531 380 MLYSRRVTGPRVVTNGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDT--FVSRLEKS 443 (444)
T ss_pred HHHhCCCCCceeecCCCceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHH--HHHHHhhc
Confidence 99888764211 0 0 110 1244555556789999999 77887765
No 103
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=99.84 E-value=1.1e-18 Score=200.42 Aligned_cols=320 Identities=14% Similarity=0.144 Sum_probs=214.0
Q ss_pred ecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCC--cceeeccchHHHHHHHHHH
Q 001989 170 FIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPM--SNASLLDEGTAAAEAMAMC 247 (985)
Q Consensus 170 ~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~--~~~sl~~~~ta~~ea~~~a 247 (985)
.++.| |..+++.+.+++. ++ | ..+.++ ..+.+.++++.+++++|.+. ..+.++.+||.++++++.+
T Consensus 8 ~~~pg--P~~~~~~~~~a~~-~~-~----~~~~~~----~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~ 75 (368)
T PRK13479 8 LLTPG--PLTTSRTVREAML-RD-W----GSWDDD----FNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGS 75 (368)
T ss_pred eecCC--CCCCCHHHHHHhC-CC-C----CCCChH----HHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHh
Confidence 34666 4457777764433 32 3 122222 22568889999999999965 3477889999988888876
Q ss_pred hhhhcCCCCEEEEcCC-CChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cC--CCEeEEEEEcC-CCCeeecc
Q 001989 248 NNIQKGKKKTFIIASN-CHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KS--GDVCGVLVQYP-GTEGEVLD 314 (985)
Q Consensus 248 ~~~~~~~g~~Vlv~~~-~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~--~~t~~V~v~~p-n~~G~v~d 314 (985)
+. . ++++|++... .++.. +..+++..|++++.++. +++++ +. +++++|++.+| |.+|.+.|
T Consensus 76 l~-~--~~~~vlv~~~~~~~~~---~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~ 149 (368)
T PRK13479 76 LV-P--RDGKVLVPDNGAYGAR---IAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAADPRITHVALVHCETTTGILNP 149 (368)
T ss_pred cc-C--CCCeEEEEeCCchHHH---HHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccC
Confidence 53 2 6777777654 44433 22334567888887754 34444 43 45678888888 67999999
Q ss_pred HHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeee
Q 001989 315 YGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSI 392 (985)
Q Consensus 315 i~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~ 392 (985)
+++|+++||++|++++|| ..+++|.. .+..++++|++++++ |+|+ |+||+||+++++++++.+.....
T Consensus 150 ~~~i~~l~~~~~~~livD-a~~~~g~~~~~~~~~~~d~~v~s~~K~l~-----g~~G~G~l~~~~~~~~~~~~~~~---- 219 (368)
T PRK13479 150 LDEIAAVAKRHGKRLIVD-AMSSFGAIPIDIAELGIDALISSANKCIE-----GVPGFGFVIARRSELEACKGNSR---- 219 (368)
T ss_pred HHHHHHHHHHcCCEEEEE-cccccCCccccccccCceEEEecCccccc-----cCCCceEEEECHHHHHHhhcCCC----
Confidence 999999999999999996 34566643 234678999999998 6674 44678999999998877753221
Q ss_pred cCCCCcceeeecccccccccccc---cCCCccchhHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 001989 393 DSSGKPALRVAMQTREQHIRRDK---ATSNICTAQALLANMAAMYAVYHGP-EGLKTIAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 393 d~~g~~~~~l~l~tre~~irre~---atsni~t~~~l~a~~aa~~l~~~g~-~Gl~~i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
.+.+++........+.. -|.|+ ..++++.+++ ..+.. .|++++.+++.++++++++.|+++| ++
T Consensus 220 ------~~~~~~~~~~~~~~~~~~~~~t~~~---~~~~~l~~al--~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~ 287 (368)
T PRK13479 220 ------SLSLDLYDQWAYMEKTGQWRFTPPT---HVVAAFYQAL--LELEEEGGVPARGARYANNQRTLVAGMRALG-FE 287 (368)
T ss_pred ------CeeecHHHHHhhhcccCCCCCCCcH---HHHHHHHHHH--HHHHHhhCHHHHHHHHHHHHHHHHHHHHHcC-Cc
Confidence 12222111000000111 13333 4455555555 33323 3588889999999999999999997 88
Q ss_pred EcCCC--Ccc-eEEEecCC-----HHHHHHHHHHcCceeeeec---CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 469 VQGLP--FFD-TVKVKCAD-----AHAIASAAYKIEMNLRVVD---SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 469 ~~~~~--~~~-~~~~~~~~-----~~~v~~~L~~~GI~~~~~~---~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++.++ ..+ .+.|..+. ..++.++|.++||.++... .+.+|++.+-++|++|+++++++|+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~ 359 (368)
T PRK13479 288 PLLDAEIQSPIIVTFHAPADPAYDFKEFYERLKEQGFVIYPGKLTQVDTFRIGCIGDVDAADIRRLVAAIAE 359 (368)
T ss_pred ccCCchhcCceEEEEECCCCCCcCHHHHHHHHHHCCEEEecCCCCCCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 76322 111 23444331 5789999999999886421 35899998889999999999999974
No 104
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=99.83 E-value=4.5e-19 Score=206.18 Aligned_cols=299 Identities=20% Similarity=0.243 Sum_probs=193.9
Q ss_pred HHHHHHHH----HHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH-HHH--HCCcEE
Q 001989 632 EMFNNLGE----WLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA-TAA--MCGMKI 704 (985)
Q Consensus 632 ~~~~e~~~----~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~-~a~--~~G~~v 704 (985)
+.+.++++ .+++++|.+.+.+.++||+.|+++++.++. +++|+|++++..|+.+.. .++ ..+...
T Consensus 70 ~~~~~lE~~~~~~la~l~g~~~alv~~~SG~~A~~~~l~al~--------~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~ 141 (416)
T PRK13034 70 EFVDEVEALAIERAKQLFGCDYANVQPHSGSQANGAVYLALL--------KPGDTILGMSLSHGGHLTHGAKVSLSGKWY 141 (416)
T ss_pred hHHHHHHHHHHHHHHHHhCCCceEEecCCcHHHHHHHHHHhc--------CCCCEEEEcCccceeeeecCCcceecccee
Confidence 44556666 999999998876777899988877666542 478999999888876311 111 122222
Q ss_pred --EEEcCCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCC-CC
Q 001989 705 --VSVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS-PG 780 (985)
Q Consensus 705 --v~v~~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~-pg 780 (985)
+.++++. ++.+|+++++++++. .++++|+++.+. +|... |+++|.++|+++|++++||++|..+..+.+. ++
T Consensus 142 ~~~~~~~~~~~~~~d~~~le~~l~~--~~~klVi~~~~~-~g~~~-dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~ 217 (416)
T PRK13034 142 NAVQYGVDRLTGLIDYDEVEELAKE--HKPKLIIAGFSA-YPREL-DFARFREIADEVGALLMVDMAHIAGLVAAGEHPN 217 (416)
T ss_pred eeEEcccccccCCcCHHHHHHHHhh--cCCeEEEECCCc-ccccc-CHHHHHHHHHHcCCEEEEeCcccccCcccCCCCC
Confidence 3455543 467999999999863 357788775543 57766 8999999999999999999999755433211 11
Q ss_pred c-cCCcEEEeCCcccccccCCCCCCceEEEEEccc-ccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 001989 781 Y-IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 781 ~-~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
. .++|++++++||+++ ||.+|+++++++ +...+....+. .+.++.. .+..++.+.+
T Consensus 218 ~~~~~Di~~~s~~K~l~------g~~GG~v~~~~~~~~~~~~~~~~~---------------~~~~~~~-~~~~aa~~~a 275 (416)
T PRK13034 218 PFPHAHVVTTTTHKTLR------GPRGGMILTNDEEIAKKINSAVFP---------------GLQGGPL-MHVIAAKAVA 275 (416)
T ss_pred CCCCceEEEEeCcccCC------CCCCeEEEECcHHHHHHHHhhcCC---------------cccCCcc-HHHHHHHHHH
Confidence 1 258999999999984 455577766643 33322111110 0000000 1112222333
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC-
Q 001989 859 YIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT- 936 (985)
Q Consensus 859 ~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~- 936 (985)
.+..+.. +..++.++..+++++|+++|++ |+++..++ ...+.+.+.+.. .+.....+.++|.++||+++.
T Consensus 276 l~~~~~~-~~~~~~~~l~~~a~~l~~~L~~~G~~~~~~~---~~t~i~~v~~~~----~~~~~~~~~~~L~~~GI~v~~~ 347 (416)
T PRK13034 276 FGEALQP-EFKTYAKQVIANAQALAEVLKERGYDLVSGG---TDNHLLLVDLRP----KGLSGKDAEQALERAGITVNKN 347 (416)
T ss_pred HHHHhCh-hHHHHHHHHHHHHHHHHHHHHHcCCEeccCC---CCCcEEEEEcCC----CCCCHHHHHHHHHhCCcEEecc
Confidence 3444332 3345567889999999999986 66654211 123345565541 245677888999999999864
Q ss_pred -----CCCC-CCCEEEEeccC----CCCHHHHHHHHccCChhHHHHhh
Q 001989 937 -----MSWP-VPGTLMIEPTE----SESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 937 -----~~~p-~~~~lris~t~----~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
..+| ++..||++++. .++++||++ +++.|++++...
T Consensus 348 ~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~--l~~~l~~~~~~~ 393 (416)
T PRK13034 348 TVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFRE--IANWILDVLDDL 393 (416)
T ss_pred CCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHH--HHHHHHHHHhcC
Confidence 2334 45789999988 677999999 888888887643
No 105
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=99.83 E-value=2.1e-19 Score=206.75 Aligned_cols=310 Identities=14% Similarity=0.072 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHHHHHhCCCc---cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH--HHHCCc-E
Q 001989 630 YQEMFNNLGEWLCTITGFDS---FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT--AAMCGM-K 703 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~---~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~--a~~~G~-~ 703 (985)
+.+++++.++.+++++|.+. +.++.++|+.++++++..+ . ..++..+++ ...|+..... ++..|+ +
T Consensus 46 f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l---~----~~~~~~vi~-~g~f~~~~~~~~~~~~g~~~ 117 (378)
T PRK03080 46 VKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSL---L----GARRVDHLA-WESFGSKWATDVVKQLKLED 117 (378)
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhc---C----CCCcceEEE-eCHHHHHHHHHHHhhcCCCC
Confidence 34677899999999999853 2234457887776554432 1 012444554 4566654332 356799 9
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
++.++.++++.+|++++ + . ++.|.+++. +.+|++. |+++|++ |++|++++||++|+.+...+ +..
T Consensus 118 v~~~~~~~g~~~d~~~i----~---~-~~~V~~~h~~t~tG~~~-pi~~I~~--~~~g~~~vVDa~qs~G~~pi-dv~-- 183 (378)
T PRK03080 118 PRVLEADYGSLPDLSAV----D---F-DRDVVFTWNGTTTGVRV-PVARWIG--ADREGLTICDATSAAFALPL-DWS-- 183 (378)
T ss_pred ceEeccCCCCCCCHhhc----C---C-CCCEEEEecCCccceec-cchhhcc--ccCCCeEEEecccccccCCC-CHH--
Confidence 99999887778888763 2 2 345777775 5799999 8999999 88999999999997655443 223
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCC----CC------CCCCCCCCCCCCCCcchhhhHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTG----GI------PAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~----~~------~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
.+|++++++||||+ |.||+|++++++++.+.+.+...++.. +. .....+.++.++.. ...
T Consensus 184 ~iD~~~~s~~K~l~-----~P~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~-----i~~ 253 (378)
T PRK03080 184 KLDVYTFSWQKVLG-----GEGGHGMAILSPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPS-----MLT 253 (378)
T ss_pred HCcEEEEehhhhCC-----CCCceEEEEECHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCch-----HHH
Confidence 27999999999995 336999999998776554332222110 00 00001122222221 111
Q ss_pred HHHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHhhc-c-CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH
Q 001989 853 LPISYTYIAMMGSK-GLTEASKIAILNANYMAKRLEK-H-YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 853 ~~~a~a~l~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~-g-~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
+.+..++|+.+..+ |+.++.++..+++++++++|++ + +.+....+.......+.+.++.. +.+. ..++..+|.+
T Consensus 254 i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~--~~~~-~~~~~~~l~~ 330 (378)
T PRK03080 254 VEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDA--QAAV-DAAAVAKLLR 330 (378)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCc--hHHH-HHHHHHHHHH
Confidence 22223455666565 7888888899999999999986 2 33321111111111233444310 0012 2456667777
Q ss_pred CCCccCCCCCC-CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 930 YGFHGPTMSWP-VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 930 ~Gi~~~~~~~p-~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+|+.+..-.+. ..+.+|+|++.++|++|||+ +++.|+++++.+|+
T Consensus 331 ~~i~v~~g~~~~~~~~vRis~~~~~t~~di~~--l~~al~~~~~~~~~ 376 (378)
T PRK03080 331 ENGAVDIEPYRDAPNGLRIWCGPTVEPADVEA--LTPWLDWAFERLKA 376 (378)
T ss_pred cCCeeccccccCCCCcEEEecCCCCCHHHHHH--HHHHHHHHHHHHhh
Confidence 78776421111 24789999999999999999 88999999998876
No 106
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.83 E-value=4.6e-19 Score=208.61 Aligned_cols=284 Identities=12% Similarity=0.077 Sum_probs=192.5
Q ss_pred HHHHHHH-HHHHHHHhcCCCCcceeec---cchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhc------C
Q 001989 209 RLESLLN-FQTMIADLTGLPMSNASLL---DEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRAD------G 278 (985)
Q Consensus 209 ~l~~i~e-~q~~ia~L~g~~~~~~sl~---~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~------~ 278 (985)
..+.+.+ +++.+++++|++.+++.+. .+||.+..+++.++ + ++||+|++++.+|++....+..+.+ .
T Consensus 77 ~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al-~--~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~ 153 (452)
T PTZ00094 77 VVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYTAL-L--QPHDRIMGLDLPSGGHLTHGFYTAKKKVSATS 153 (452)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHHHh-c--CCCCEEEecccccCCcccccccccccccccce
Confidence 3456663 7889999999987664333 57777666666665 3 3789999999999998877643221 1
Q ss_pred CCeEEEE--------eCchhhhc-cC-CCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-----C
Q 001989 279 FDIKVVV--------SDLKDIDY-KS-GDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-----P 343 (985)
Q Consensus 279 ~gi~v~~--------v~~~~l~~-l~-~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-----~ 343 (985)
.++++.. +|+++|++ +. .+++.|++.++ .+|.+.|+++|+++||++|++++||+ .+++|.+. .
T Consensus 154 ~~~~~~~~~~~~~g~id~~~L~~~l~~~~~~lvi~~~s-~~g~~~di~~I~~i~~~~ga~l~vDa-aq~~G~i~~~~~~~ 231 (452)
T PTZ00094 154 IYFESLPYQVNEKGLIDYDKLEELAKAFRPKLIIAGAS-AYPRDIDYKRFREICDSVGAYLMADI-AHTSGLVAAGVLPS 231 (452)
T ss_pred eeeeeeecccCCCCCcCHHHHHHHHHHhCCCEEEEeCC-CCCCccCHHHHHHHHHHcCCEEEEec-cchhccccCCCCCC
Confidence 1233333 24456666 53 24566666544 59999999999999999999999953 45666552 1
Q ss_pred CCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccc
Q 001989 344 PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT 422 (985)
Q Consensus 344 ~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t 422 (985)
+. .|+|++++|+ |+|++| ..|++++++++.+.+..++ + .. .+ + . ..|+.+.
T Consensus 232 ~~-~~~D~l~~S~hK~l~GP------~Gg~l~~~~~~~~~l~~~~-----~---~~--~~---p-----~-~~G~~~~-- 283 (452)
T PTZ00094 232 PF-PYADVVTTTTHKSLRGP------RSGLIFYRKKVKPDIENKI-----N---EA--VF---P-----G-LQGGPHN-- 283 (452)
T ss_pred CC-CCCcEEEcCCccCCCCC------CceEEEEecccchHHHHhh-----c---cc--cC---C-----C-CCCCchH--
Confidence 22 3899999999 667555 3467888776544332111 0 00 00 0 0 1233333
Q ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC---CCcceEEEecCC--HHHHHHHHHHcCc
Q 001989 423 AQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL---PFFDTVKVKCAD--AHAIASAAYKIEM 497 (985)
Q Consensus 423 ~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~---~~~~~~~~~~~~--~~~v~~~L~~~GI 497 (985)
..+.++.+++ .++...+.+++++++.+++++|++.|++.| +++... .....+.+..++ ..++.+.|.++||
T Consensus 284 -~~iaal~~al--~~~~~~~~~~~~~~i~~l~~~l~~~L~~~g-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI 359 (452)
T PTZ00094 284 -HQIAAIAVQL--KEVQSPEWKEYAKQVLKNAKALAAALEKRG-YDLVTGGTDNHLVLVDLRPFGITGSKMEKLLDAVNI 359 (452)
T ss_pred -HHHHHHHHHH--HHHhChhHHHHHHHHHHHHHHHHHHHHhCC-cEEecCCCCCceEeecCCcCCCCHHHHHHHHHHCCc
Confidence 3455666665 555566888999999999999999998887 888732 222234444444 7788999988899
Q ss_pred eeee---------ecCCeEEEEeccCCC----HHHHHHHHHHHhC
Q 001989 498 NLRV---------VDSNTVTASFDETTT----LEDVDKLFIVFAG 529 (985)
Q Consensus 498 ~~~~---------~~~~~lris~t~~~t----~edId~li~aL~~ 529 (985)
.+.. ..++.+|++++++|| ++||++++++|..
T Consensus 360 ~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~ 404 (452)
T PTZ00094 360 SVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDR 404 (452)
T ss_pred EEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHH
Confidence 8842 124789999999987 9999999999974
No 107
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.83 E-value=1.4e-18 Score=198.53 Aligned_cols=271 Identities=13% Similarity=0.134 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHHHHhCCCccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCC-CEEEEcCCCCcccHHH---HHHCCcEE
Q 001989 630 YQEMFNNLGEWLCTITGFDSFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHR-NVCIIPVSAHGTNPAT---AAMCGMKI 704 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~-~~IIv~~~~Hg~~~~~---a~~~G~~v 704 (985)
..+.++++++++++++|.+...+ +.+++++++..++.++... +..++ ++|+++...|+++... ++..|+++
T Consensus 40 ~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~----~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v 115 (353)
T TIGR03235 40 AKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARA----GEQKGKKHIITSAIEHPAVLEPIRALERNGFTV 115 (353)
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHh----cccCCCCeeeEcccccHHHHHHHHHHHhcCCEE
Confidence 44667899999999999986544 4455566665555444321 11233 6788888888877554 34579999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g 783 (985)
+.++.++++.+|+++|+++++ +++++|+++++ |.+|.+. |+++|+++|+++|++++||++|..+...+ +..+++
T Consensus 116 ~~v~~~~~~~~d~~~l~~~l~---~~~~lv~~~~~~n~tG~~~-~~~~I~~l~~~~~~~~ivD~a~~~g~~~~-~~~~~~ 190 (353)
T TIGR03235 116 TYLPVDESGRIDVDELADAIR---PDTLLVSIMHVNNETGSIQ-PIREIAEVLEAHEAFFHVDAAQVVGKITV-DLSADR 190 (353)
T ss_pred EEEccCCCCcCCHHHHHHhCC---CCCEEEEEEcccCCceecc-CHHHHHHHHHHcCCEEEEEchhhcCCccc-cccccC
Confidence 999998889999999999997 78899999998 4699998 89999999999999999999986554433 345678
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcccccCc--CCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPF--LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~--lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~ 861 (985)
+|++++++||++ |.||+|+++++++.... +.+..++... .++.+.++.++. ....+. +.++
T Consensus 191 ~D~~~~s~~K~~------gp~g~g~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~gt~~~~-----~~~al~---~al~ 253 (353)
T TIGR03235 191 IDLISCSGHKIY------GPKGIGALVIRKRGKPKAPLKPIMFGGGQ---ERGLRPGTLPVH-----LIVGMG---EAAE 253 (353)
T ss_pred CCEEEeehhhcC------CCCceEEEEEccCcccccccCceeeCCCC---cCccccCCCChH-----HHHHHH---HHHH
Confidence 999999999986 33479999999875322 2222222110 011122233322 111122 2333
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccC
Q 001989 862 MMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP 935 (985)
Q Consensus 862 ~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~ 935 (985)
.+ .+|.+++.++..+++++++++|++ ++++.. .+.......+.+.++ +.+.+++.+.|.+ ||.+.
T Consensus 254 ~~-~~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~-~~~~~~~~i~~~~~~------~~~~~~v~~~L~~-~i~v~ 319 (353)
T TIGR03235 254 IA-RRNAQAWEVKLRAMRNQLRDALQTLGVKLNG-DPAETIPHILNFSID------GVNSEALIVNLRA-DAAVS 319 (353)
T ss_pred HH-HhhHHHHHHHHHHHHHHHHHHhccCCeEEeC-CcccccCCEEEEEeC------CcCHHHHHHHHhC-CeEEE
Confidence 33 246777778889999999999986 444432 111111222334433 5678899999965 77654
No 108
>PLN02724 Molybdenum cofactor sulfurase
Probab=99.83 E-value=4e-19 Score=221.92 Aligned_cols=320 Identities=12% Similarity=0.085 Sum_probs=202.8
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCcc--ceecCcH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH---HHHC
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDSF--SLQPNAG-AAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT---AAMC 700 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~~--~~~~~sG-a~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~---a~~~ 700 (985)
++-+.+.++++++.+++++|.+.. .+.+++| ++|+ .+++..+ ...++++||++...|.++... ++..
T Consensus 73 s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~al---nlva~~l----~~~~gd~Iv~t~~eH~svl~~~~~a~~~ 145 (805)
T PLN02724 73 SMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAAL---KLVGETF----PWSSESHFCYTLENHNSVLGIREYALEK 145 (805)
T ss_pred hhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHH---HHHHHHC----CCCCCCeEEEeeccccchHHHHHHHHHc
Confidence 445677899999999999999653 3344444 4433 3444433 124678999988888776533 3457
Q ss_pred CcEEEEEcCC--------CCCCCCH--HHHHHHHH----h---cCCCEEEEEEEcC-CCccccccCHHHHHHHHHHc---
Q 001989 701 GMKIVSVGTD--------AKGNINI--EELRKAAE----A---NRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDN--- 759 (985)
Q Consensus 701 G~~vv~v~~d--------~~g~iD~--e~L~~~i~----~---~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~--- 759 (985)
|++++.++++ ..+.+|+ ++|++.++ . ..++|++|.+++. |.+|.+. |+++|.++++..
T Consensus 146 G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~-pi~~i~~~~~~~~~~ 224 (805)
T PLN02724 146 GAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKF-PLDLVKLIKDNQHSN 224 (805)
T ss_pred CCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcC-CHHHHHHHHHhcccc
Confidence 9999999886 3455554 66776642 0 1246788999885 6799999 899876555532
Q ss_pred ----C-CEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCCCCCC-ceEEEEEcccccCcCCCCcccc-CC----
Q 001989 760 ----G-GQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGP-GMGPIGVKKHLAPFLPSHPVVS-TG---- 828 (985)
Q Consensus 760 ----g-alliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGP-g~G~i~~~~~l~~~lp~~~~g~-~~---- 828 (985)
| ++++||++|+.++..+ +..++++|++++|+|||| ||| |+|++++++++...+.+.++|+ +.
T Consensus 225 ~~~~g~~~v~vDaaQ~~g~~pi-Dv~~~~~Dfl~~S~HK~~------GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~ 297 (805)
T PLN02724 225 FSKSGRWMVLLDAAKGCGTSPP-DLSRYPADFVVVSFYKIF------GYPTGLGALLVRRDAAKLLKKKYFGGGTVAASI 297 (805)
T ss_pred cccCcceEEEeehhhhcCCCCC-ChhhcCCCEEEEecceec------cCCCCceEEEEehhhhhhhcCCccCCCceEEEe
Confidence 3 5799999998776654 456789999999999998 456 8999999987766555444443 21
Q ss_pred -C--C------CCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccC------Cee
Q 001989 829 -G--I------PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHY------PIL 893 (985)
Q Consensus 829 -~--~------~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~------~l~ 893 (985)
+ . ...+.+.+|.++.+ . .++.+|..++..+ |+.++.++...+++|+.++|++.. .+.
T Consensus 298 ~~~~~~~~~~~~~~rfE~GT~n~~~----i-~~l~aal~~l~~i---g~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~ 369 (805)
T PLN02724 298 ADIDFVKRRERVEQRFEDGTISFLS----I-AALRHGFKLLNRL---TISAIAMHTWALTHYVANSLRNLKHGNGAPVCV 369 (805)
T ss_pred cccceeeccccHHHHhcCCCcchhH----H-HHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEE
Confidence 0 0 00123445555432 2 2233444445444 556667788899999999998632 132
Q ss_pred ecCCC------CceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC---CCCC------------------------
Q 001989 894 FRGVN------GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT---MSWP------------------------ 940 (985)
Q Consensus 894 ~~~~~------~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~---~~~p------------------------ 940 (985)
+.++. ......+.+.+.+. ....+...++.+.+.++||.+.+ |..+
T Consensus 370 iyg~~~~~~~~~~r~~ivsFnv~~~-~~~~v~~~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~ 448 (805)
T PLN02724 370 LYGNHTFKLEFHIQGPIVTFNLKRA-DGSWVGHREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCW 448 (805)
T ss_pred EcCCCCCCCCcccccCEEEEEEEcC-CCCEeCHHHHHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccC
Confidence 22221 01122233343311 00013345566655677988642 1110
Q ss_pred ---------CCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 941 ---------VPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 941 ---------~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
..+++|+|+..++|.||||+ +++.|++.+-
T Consensus 449 ~~~~~~~~~~~G~vRvS~g~ynt~eDvd~--lv~~l~~~~~ 487 (805)
T PLN02724 449 DDQDVIHGRPTGAVRVSFGYMSTFEDCQK--FIDFIISSFV 487 (805)
T ss_pred chhheecCcccceEEEEcCccCCHHHHHH--HHHHHHHHhh
Confidence 02889999999999999999 7788888763
No 109
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=99.83 E-value=9.1e-19 Score=203.03 Aligned_cols=281 Identities=15% Similarity=0.170 Sum_probs=195.4
Q ss_pred HhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001989 205 IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 205 ~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~ 284 (985)
...|+.+...++++.+|+++|.+. +.+++|++.+..+++.++ + ++||+|++++..|+++...++. ++..++.+.
T Consensus 77 ~~~G~~~~~~~le~~ia~~~g~~~--~ii~~~~~~a~~~~~~~l-~--~~gd~vi~~~~~~~s~~~~~~~-~~~~~~~~~ 150 (393)
T TIGR01822 77 FICGTQDIHKELEAKIAAFLGTED--TILYASCFDANGGLFETL-L--GAEDAIISDALNHASIIDGVRL-CKAKRYRYA 150 (393)
T ss_pred cccCChHHHHHHHHHHHHHhCCCc--EEEECchHHHHHHHHHHh-C--CCCCEEEEeccccHHHHHHHHh-cCCceEEeC
Confidence 345888888999999999999863 677788887766665554 2 3899999999999999988754 444455555
Q ss_pred EeCchhhhc-cCC------CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCC---------cc
Q 001989 285 VSDLKDIDY-KSG------DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPG---------EL 347 (985)
Q Consensus 285 ~v~~~~l~~-l~~------~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~---------~~ 347 (985)
..|++++++ +.+ +|++|++.++ |++|.+.|+++|+++||++|+++++| +.+++|.+...+ ..
T Consensus 151 ~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~D-e~~~~g~~~~~~~~~~~~~~~~~ 229 (393)
T TIGR01822 151 NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVD-ECHATGFLGPTGRGSHELCGVMG 229 (393)
T ss_pred CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEE-CCccccCcCCCCCchHHhcCCCC
Confidence 567777776 542 7888887765 78999999999999999999999994 344555432111 22
Q ss_pred cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHH
Q 001989 348 GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQAL 426 (985)
Q Consensus 348 GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l 426 (985)
++|+++++. |+++ |+.+|++++++++.+.+... ...+.+ .+|.+ +...
T Consensus 230 ~~di~~~s~sK~l~------g~r~G~~~~~~~~~~~l~~~----------~~~~~~------------~~~~~---~~~~ 278 (393)
T TIGR01822 230 RVDIITGTLGKALG------GASGGFTTARKEVVELLRQR----------SRPYLF------------SNSLP---PAVV 278 (393)
T ss_pred CCeEEEEEChHHhh------CCCcEEEEeCHHHHHHHHHh----------Ccccee------------cCCCC---HHHH
Confidence 689999998 7664 34458999988877655110 000111 11111 1222
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeee-
Q 001989 427 LANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVV- 502 (985)
Q Consensus 427 ~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~- 502 (985)
.+..+++ ..+ ++.+++.++..++.+++++.|++.| +++... ....+.+..++ +.++.+.|.++||.+...
T Consensus 279 ~a~~~al--~~~--~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~-~~~~~~i~~~~~~~~~~l~~~L~~~gI~v~~~~ 352 (393)
T TIGR01822 279 GASIKVL--EML--EASNELRDRLWANTRYFRERMEAAG-FDIKPA-DHPIIPVMLYDAVLAQRFARRLLEEGIYVTGFF 352 (393)
T ss_pred HHHHHHH--HHH--hcCHHHHHHHHHHHHHHHHHHHHcC-CCCCCC-CCCEEEEEeCCHHHHHHHHHHHHHCCeeEeeeC
Confidence 2223332 332 2456788889999999999999887 776532 12233444333 678999999999987522
Q ss_pred ----c--CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 ----D--SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ----~--~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. ...+|+|++.++|++|||+++++|.+
T Consensus 353 ~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~ 385 (393)
T TIGR01822 353 YPVVPKGQARIRVQISAAHTEEQLDRAVEAFTR 385 (393)
T ss_pred CCCCCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 1 24699999999999999999999974
No 110
>PLN02955 8-amino-7-oxononanoate synthase
Probab=99.83 E-value=5.6e-19 Score=203.21 Aligned_cols=311 Identities=18% Similarity=0.206 Sum_probs=211.8
Q ss_pred CCccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHH
Q 001989 164 NKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEA 243 (985)
Q Consensus 164 n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea 243 (985)
|.+.++|||.+..|....+.+. . +.+ |.+ ++..+....|+...+.++|+.+|+++|.+. +.++++|..+..+
T Consensus 106 ~FsSndYLGL~~~p~v~~a~~~-a-i~~--yG~--g~~gSrl~~G~~~~h~~LE~~LA~f~g~e~--all~sSGy~AN~~ 177 (476)
T PLN02955 106 LFSGNDYLGLSSHPTISNAAAN-A-AKE--YGM--GPKGSALICGYTTYHRLLESSLADLKKKED--CLVCPTGFAANMA 177 (476)
T ss_pred EeeccCccCCCCCHHHHHHHHH-H-HHH--cCC--CCCCcCccccChHHHHHHHHHHHHHHCCCc--EEEECChHHHHHH
Confidence 3456789999987666666553 3 333 333 445677889999999999999999999987 7788888877777
Q ss_pred HHHHhhh-----------hcCCCCEEEEcCCCChhHHHHHHHhhcCC-CeEE---EEeCchhhhc-c---CCCEeEEEEE
Q 001989 244 MAMCNNI-----------QKGKKKTFIIASNCHPQTIDICITRADGF-DIKV---VVSDLKDIDY-K---SGDVCGVLVQ 304 (985)
Q Consensus 244 ~~~a~~~-----------~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~-gi~v---~~v~~~~l~~-l---~~~t~~V~v~ 304 (985)
++-++.. ..++++.|+.++.+|+|+++.++. ++.. +.++ .+.|+++|++ + .++.+ ++|+
T Consensus 178 ~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~l-s~~~~~a~~~~f~HND~~~Le~~L~~~~~~~~-~Vv~ 255 (476)
T PLN02955 178 AMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRL-AERQGNVEVFVYRHCDMYHLNSLLSSCKMKRK-VVVT 255 (476)
T ss_pred HHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHh-ccccCCceEEEeCCCCHHHHHHHHHhCCCCce-EEEE
Confidence 6644310 013567899999999999999874 3322 3444 4457777776 4 23344 4555
Q ss_pred cC--CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCC-----cc----cceEEEecC-ccccccCCCCCCcEEE
Q 001989 305 YP--GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPG-----EL----GADIVVGSA-QRFGVPMGYGGPHAAF 372 (985)
Q Consensus 305 ~p--n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~-----~~----GaDi~v~s~-k~lg~P~~~GGP~~G~ 372 (985)
.+ ++.|.+.|+++|.++++++|++++| ++.++.|.+..-| .+ ..||++++. |.||. .| ||
T Consensus 256 EgV~SmdGdiapL~eL~~L~~~~ga~LiV-DEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~---~G----Gf 327 (476)
T PLN02955 256 DSLFSMDGDFAPMEELSQLRKKYGFLLVI-DDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGC---HG----GF 327 (476)
T ss_pred eCCCCCCCCcCCHHHHHHHHHHcCcEEEE-cccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhc---cC----ce
Confidence 54 8899999999999999999999999 4567777665422 23 468999996 98864 23 68
Q ss_pred EEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH--HHHhCcchHHHHHHHH
Q 001989 373 LATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY--AVYHGPEGLKTIAQRV 450 (985)
Q Consensus 373 l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~--l~~~g~~Gl~~i~~~~ 450 (985)
+++++++++.+- ..+.++|+|++..+++++++. +..+ ..+ +...+++
T Consensus 328 i~gs~~~~~~l~-----------------------------~~~~~~ifStalpp~~aaa~laal~l~-~~~-~~~r~~L 376 (476)
T PLN02955 328 IACSKKWKQLIQ-----------------------------SRGRSFIFSTAIPVPMAAAAYAAVVVA-RKE-KWRRKAI 376 (476)
T ss_pred eecHHHHHHHHH-----------------------------HhCCCCeecccccHHHHHHHHHHHHHH-hcC-HHHHHHH
Confidence 888887665541 112233444433333333321 1222 122 3467888
Q ss_pred HHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC-HHHHHHHHHHcCceeeeec-------CCeEEEEeccCCCHHHHHH
Q 001989 451 HGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-AHAIASAAYKIEMNLRVVD-------SNTVTASFDETTTLEDVDK 522 (985)
Q Consensus 451 ~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~~~-------~~~lris~t~~~t~edId~ 522 (985)
+++.+|+++. .| +.+ ..| +..+.+..+. +.++.++|.++||++..+. ...+|++++..||++|||+
T Consensus 377 ~~n~~~fr~~---~G-~~~-~sP-I~pI~ig~~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~ 450 (476)
T PLN02955 377 WERVKEFKAL---SG-VDI-SSP-IISLVVGNQEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKK 450 (476)
T ss_pred HHHHHHHHHh---cC-CCC-CCC-EEEEEeCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHH
Confidence 8999999884 35 543 222 1133333333 7889999999999886431 2479999999999999999
Q ss_pred HHHHHhC
Q 001989 523 LFIVFAG 529 (985)
Q Consensus 523 li~aL~~ 529 (985)
++++|..
T Consensus 451 lv~~L~~ 457 (476)
T PLN02955 451 LITALSS 457 (476)
T ss_pred HHHHHHH
Confidence 9999974
No 111
>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]
Probab=99.83 E-value=1.3e-19 Score=187.23 Aligned_cols=310 Identities=15% Similarity=0.154 Sum_probs=217.1
Q ss_pred CCccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHH
Q 001989 164 NKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEA 243 (985)
Q Consensus 164 n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea 243 (985)
|.+.+||||...+|..+.+... .++. |. .+|-..+...|+-..+.++++.||++-|-+. ..+|+++-.+..+
T Consensus 71 nFcaNnYLGLsshPeii~a~~~--alee--yG--aGlssvrfIcGtq~iHk~LE~kiAqfh~rED--~ilypscfdANag 142 (417)
T KOG1359|consen 71 NFCANNYLGLSSHPEIINAGQK--ALEE--YG--AGLSSVRFICGTQDIHKLLESKIAQFHGRED--TILYPSCFDANAG 142 (417)
T ss_pred eecccccccccCChHHHHHHHH--HHHH--hC--CCccceeEEecchHHHHHHHHHHHHHhCCCc--eEEeccccccchH
Confidence 5567899999998888777764 3332 21 2555667788999999999999999999887 4555554433333
Q ss_pred HHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchhhhc-c---CCCEeEEEEEcC--CCCeeeccHHH
Q 001989 244 MAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDY-K---SGDVCGVLVQYP--GTEGEVLDYGD 317 (985)
Q Consensus 244 ~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~~-l---~~~t~~V~v~~p--n~~G~v~di~~ 317 (985)
+.-|+ . .+.|-|+.++.+|.|+++.++. |+ ...++|+-+++. + .+--.-+++|.. ++.|.+.|+++
T Consensus 143 ~feai-l--~pedAvfSDeLNhASIIdGirL-ck----ry~h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaPl~e 214 (417)
T KOG1359|consen 143 AFEAI-L--TPEDAVFSDELNHASIIDGIRL-CK----RYRHVDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAPLEE 214 (417)
T ss_pred HHHHh-c--ChhhhhhccccccchhhhhhHH-Hh----hhccchhHHHHHHHHHhhhheEEEEEecceeccCCCcccHHH
Confidence 33333 1 2788999999999999999864 55 344566656554 2 122234667776 88999999999
Q ss_pred HHHHHHhCCcEEEEEecCccccCCCCCC-----ccc----ceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCce
Q 001989 318 FIKNAHANGVKVVMATDLLALTILKPPG-----ELG----ADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRI 387 (985)
Q Consensus 318 I~~~a~~~galliV~a~~~~lg~l~~~~-----~~G----aDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~ 387 (985)
|++++++||+|++++ +.++.|++...| ++| +||+.++. |.+|+- +.||..+.+.++..+
T Consensus 215 i~~La~kYgaLlfiD-ecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga------~GGyttgp~~li~ll---- 283 (417)
T KOG1359|consen 215 ISQLAKKYGALLFID-ECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGA------SGGYTTGPKPLISLL---- 283 (417)
T ss_pred HHHHHHhcCcEEEEe-ecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCC------CCCCccCChhHHHHH----
Confidence 999999999999994 455666554332 233 79988886 988653 336877777665544
Q ss_pred eeeeecCCCCcceeeecccccccccccccCCCccchhHHH---HHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC
Q 001989 388 VGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALL---ANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL 464 (985)
Q Consensus 388 vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~---a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~ 464 (985)
|.++++++++|+..+ +..+.+|..++.. .++..+...+.+++++.++..
T Consensus 284 -------------------------rqr~RpylFSnslppavV~~a~ka~dllm~s---~~~i~~~~a~~qrfr~~me~a 335 (417)
T KOG1359|consen 284 -------------------------RQRSRPYLFSNSLPPAVVGMAAKAYDLLMVS---SKEIQSRQANTQRFREFMEAA 335 (417)
T ss_pred -------------------------HhcCCceeecCCCChhhhhhhHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHhc
Confidence 234556666665543 3334445444443 455566678889999999888
Q ss_pred CCeEEcCC-CCcceEEEecCC-HHHHHHHHHHcCceee-----eecC--CeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 465 GTVEVQGL-PFFDTVKVKCAD-AHAIASAAYKIEMNLR-----VVDS--NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 465 g~~~~~~~-~~~~~~~~~~~~-~~~v~~~L~~~GI~~~-----~~~~--~~lris~t~~~t~edId~li~aL~~ 529 (985)
| |++.+. ...-++.+.... +.+.++.|.++||++- .+++ ..+|+.++..||+||||++++++.+
T Consensus 336 G-ftIsg~~hPI~pv~lGda~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~ 408 (417)
T KOG1359|consen 336 G-FTISGASHPICPVMLGDARLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSE 408 (417)
T ss_pred C-ceecCCCCCccceecccHHHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHH
Confidence 8 999753 233456665444 8899999999999872 2232 5689999999999999999999975
No 112
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.82 E-value=1.8e-18 Score=198.20 Aligned_cols=301 Identities=13% Similarity=0.124 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
+.++++.+++++|.+.. +..++|++++..++.++. .++++|+++...|......++..|++++.++.++++
T Consensus 46 ~~~l~~~la~~~g~~~i-~~~~g~t~al~~~l~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 116 (361)
T cd06452 46 IKDFHHDLAEFLGMDEA-RVTPGAREGKFAVMHSLC--------EKGDWVVVDGLAHYTSYVAAERAGLNVREVPNTGHP 116 (361)
T ss_pred HHHHHHHHHHHcCCceE-EEeCCHHHHHHHHHHHhc--------CCCCEEEEcCCcchHHHHHHHhcCCEEEEEecCCCC
Confidence 55889999999999543 445556666644443321 367899999887776666678899999999997654
Q ss_pred --CCCHHHHHHHHHhcC----CCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcE
Q 001989 714 --NINIEELRKAAEANR----DNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADV 786 (985)
Q Consensus 714 --~iD~e~L~~~i~~~~----~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di 786 (985)
.+|+++|++++++.. +++++|++++|+ .+|.+. |+++|.++|+++|+++++|+++..+...+ .+.++++|+
T Consensus 117 ~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~-~~~~i~~~~~~~~~~vivD~a~~~g~~~~-~~~~~~~d~ 194 (361)
T cd06452 117 EYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLH-DAKKIAKVCHEYGVPLLLNGAYTVGRMPV-SGKELGADF 194 (361)
T ss_pred CcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeec-cHHHHHHHHHHcCCeEEEECCcccCCcCC-CHHHcCCCE
Confidence 899999999986321 368899999996 599998 89999999999999999999986332222 334678999
Q ss_pred EEeCCcccccccCCCCCCceEEEEEcccccCcCCCC--ccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSH--PVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~--~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
++.|+||+|+. ++++|++++++++.+.+... .+... ......+++. . ..+..+++.+..+
T Consensus 195 ~~~s~~K~l~~-----~~~~G~l~~~~~~~~~l~~~~~~~~~~----------~~~~~~~~~~-~-~~~~~~~~al~~~- 256 (361)
T cd06452 195 IVGSGHKSMAA-----SAPIGVLATTEEWADIVFRTSQMFKIK----------EVELLGCTLR-G-APLVTLMASFPHV- 256 (361)
T ss_pred EEecCCccccC-----CCCeEEEEECHHHHHHHhccccccccc----------eeeeeccccC-c-hHHHHHHHHHHHH-
Confidence 99999999952 34789999987665543211 00000 0000000000 0 0111122333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCc---cccCCCCHHHHHHHHHHCCCccCCCCC
Q 001989 865 SKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGL---KNTAGIEPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~---~~~~g~~~~~v~~~L~~~Gi~~~~~~~ 939 (985)
.+.+ +...+..+++++++++|++ ++++....+ ...+.+.++.+.+ ......++.++.++|.++||.+...
T Consensus 257 ~~~~-~~~~~~~~~~~~l~~~L~~l~g~~v~~~~~--~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~-- 331 (361)
T cd06452 257 KERV-KRWDEEVEKARWFVAELEKIEGIKQLGEKP--KNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKRGIHGIKP-- 331 (361)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHhcCCCeEEECCCC--CCCceEEEEcCCcchhhhhccccchhHHHHHHHcCceEEcC--
Confidence 1222 2334445667899999986 444421111 1111223333211 0000123457999999999985211
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 940 PVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 940 p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
.....+|++. ...|+||+++ ++++|+++.
T Consensus 332 ~~~~~~ri~~-~g~~~e~~~~--l~~al~~~~ 360 (361)
T cd06452 332 GLTRYFKLST-YGLTWEQVEY--VVDAFKEIA 360 (361)
T ss_pred CCceEEEEEe-cCCCHHHHHH--HHHHHHHHh
Confidence 1235788886 3479999999 778877654
No 113
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=99.82 E-value=1.6e-18 Score=199.18 Aligned_cols=296 Identities=14% Similarity=0.143 Sum_probs=190.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 625 DQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 625 e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
....|..+.++++++.+++++|.+.+ +++++|+.++.+... .+ .++++.|++...+|++....++......
T Consensus 49 ~~~~g~~~~~~~~e~~la~~~~~~~~-l~~~sG~~a~~~~~~---~~-----~~~~d~ii~d~~~H~sv~~~~~~~~~~~ 119 (370)
T PRK05937 49 RAILGPSSLLDDLEHKIAHFHGAPEA-FIVPSGYMANLGLCA---HL-----SSVTDYVLWDEQVHISVVYSLSVISGWH 119 (370)
T ss_pred CcccCChHHHHHHHHHHHHHhCCCeE-EEECChHHHHHHHHH---Hh-----CCCCCEEEEEhhhhHHHHHHHHHcCCce
Confidence 45567778899999999999999765 677888876643221 11 1246777777888887766655443333
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcC---CCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCC-
Q 001989 705 VSVGTDAKGNINIEELRKAAEANR---DNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP- 779 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~---~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~p- 779 (985)
+.++ .+|+++|++++++.+ +++.+|++++++ .+|.+. |+++|+++|+++|++++||++|..+..+..-.
T Consensus 120 ~~~~-----~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~-pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g 193 (370)
T PRK05937 120 QSFR-----HNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLA-PLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKG 193 (370)
T ss_pred EEec-----CCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCcc-CHHHHHHHHHHcCCEEEEECCccccccCCCCCc
Confidence 3344 369999999997431 346677788874 699998 89999999999999999999997554332110
Q ss_pred --CccCC---cEEEeCCcccccccCCCCCCceEEEEEcccccC---cCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 780 --GYIGA---DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP---FLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 780 --g~~g~---Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~---~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
..++. |+...+++|.+ |++|+|+++.++.... ..++.. ++ . .. ++.
T Consensus 194 ~~~~~~~~~~~~~~~tlsK~~------g~~G~~vl~~~~~~~~~~~~~~~~~-----------~s--~-~~--~~~---- 247 (370)
T PRK05937 194 FCHSLGYENFYAVLVTYSKAL------GSMGAALLSSSEVKQDLMLNSPPLR-----------YS--T-GL--PPH---- 247 (370)
T ss_pred hHHhhCCCCCcEEEEechhhh------hcCceEEEcCHHHHHHHHHhCCCCe-----------ec--C-CC--CHH----
Confidence 12332 35567777877 3346777765432111 111111 00 0 11 111
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~G 931 (985)
.+.+..+.+..+..+| ....++..++++++.+.|... .. +. ... +.++ +.+..++.+.|.++|
T Consensus 248 ~~~a~~aal~~l~~~~-~~~~~~l~~l~~~l~~~l~~~----~~---~~-~~~--i~~~------~~~~~~~~~~L~~~g 310 (370)
T PRK05937 248 LLISIQVAYDFLSQEG-ELARKQLFRLKEYFAQKFSSA----AP---GC-VQP--IFLP------GISEQELYSKLVETG 310 (370)
T ss_pred HHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHhcCCC----CC---CC-EEE--EEeC------ChhHHHHHHHHHHCC
Confidence 1222234444443344 233456677778887777531 00 11 111 2333 235678999999999
Q ss_pred CccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccCCcc
Q 001989 932 FHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMGRQI 980 (985)
Q Consensus 932 i~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~~~~ 980 (985)
|.++...+|..+.+|++++.++|+||||+ +++.|++++++.+++=-|
T Consensus 311 i~v~~~~~~~~~~iRis~~~~~t~edid~--l~~~L~~~~~~~~~~~~~ 357 (370)
T PRK05937 311 IRVGVVCFPTGPFLRVNLHAFNTEDEVDI--LVSVLATYLEKYQKNVVI 357 (370)
T ss_pred eeEEeeCCCCCCEEEEEcCCCCCHHHHHH--HHHHHHHHHHHhCCCccc
Confidence 98875555656789999999999999999 889999999888776544
No 114
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.82 E-value=1.5e-18 Score=201.77 Aligned_cols=292 Identities=20% Similarity=0.202 Sum_probs=190.8
Q ss_pred HHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH-----HHHCCcEEEEEcCCC
Q 001989 637 LGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT-----AAMCGMKIVSVGTDA 711 (985)
Q Consensus 637 ~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~-----a~~~G~~vv~v~~d~ 711 (985)
.++.+++++|.+...+.+++|++|+.+++.++. +++|+|+++++.|+.+... ++..|.+++.++++.
T Consensus 70 ~~~~~~~~~g~~~~~v~~~sgt~a~~~~l~~l~--------~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 141 (402)
T cd00378 70 AIERAKKLFGAEYANVQPHSGSQANLAVYFALL--------EPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGV 141 (402)
T ss_pred HHHHHHHHhCCCceeeecCCcHHHHHHHHHHhc--------CCCCEEEEecCccCccccccccccccccceeEEEecCCc
Confidence 567788999998766777778887755554432 4788999988888766433 556788777776643
Q ss_pred ---CCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccC---CCCCCccCCc
Q 001989 712 ---KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG---LTSPGYIGAD 785 (985)
Q Consensus 712 ---~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~---l~~pg~~g~D 785 (985)
++.+|++++++++.+ +++++|++++|+ +|... |+++|+++||++|+++++|++|..++.. ...+.. ++|
T Consensus 142 ~~~~~~id~~~l~~~i~~--~~~~~v~~~~~~-~~~~~-~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~-~~d 216 (402)
T cd00378 142 DPETGLIDYDALEKMALE--FKPKLIVAGASA-YPRPI-DFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP-GAD 216 (402)
T ss_pred CcccCCcCHHHHHHHHHh--CCCCEEEecCcc-cCCCc-CHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc-CCc
Confidence 589999999999963 567888887765 36666 8999999999999999999998543321 111223 689
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
++++|+||+| +||.+|++++++ ++.+.+..... .. ..++... ...++.+ ..+..+.
T Consensus 217 v~~~s~sK~l------~G~~gg~i~~~~~~~~~~l~~~~~------------~~--~~~~~~~--~~~~a~~-~al~~~~ 273 (402)
T cd00378 217 VVTTTTHKTL------RGPRGGLILTRKGELAKKINSAVF------------PG--LQGGPHL--HVIAAKA-VALKEAL 273 (402)
T ss_pred EEEeccccCC------CCCCceEEEeccHHHHHHHHHHhC------------cc--ccCCchH--HHHHHHH-HHHHHHh
Confidence 9999999998 367777777765 65544321100 00 0011000 1111111 2222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCC--
Q 001989 865 SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPV-- 941 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~-- 941 (985)
..++.+..++..++++++.+.|++ ++.+.. .+.+ .+.+.++++. .+.+...+.+.|.++||.+....+|.
T Consensus 274 ~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~--~~~v~v~~~~----~~~~~~~~~~~l~~~gI~v~~~~~p~~~ 346 (402)
T cd00378 274 EPEFKAYAKQVVENAKALAEALKERGFKVVS-GGTD--NHLVLVDLRP----KGITGKAAEDALEEAGITVNKNTLPWDP 346 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCeEee-cCCC--CeEEEEeCCc----cCCCHHHHHHHHHHcCcEEcCCcCCCCC
Confidence 224566677788999999999987 555532 2212 2234566541 13456677888888999986533332
Q ss_pred -----CCEEEEeccCCC----CHHHHHHHHccCChhHHHHh
Q 001989 942 -----PGTLMIEPTESE----SKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 942 -----~~~lris~t~~~----t~eeId~~~~~~~l~~~~~~ 973 (985)
.+++|++++..+ +.+||++ +++.|++++..
T Consensus 347 ~~~~~~~~lRi~~~~~~~~~~~~~di~~--~~~~l~~~~~~ 385 (402)
T cd00378 347 SSPFVPSGIRIGTPAMTTRGMGEEEMEE--IADFIARALKD 385 (402)
T ss_pred CCCCCCCeeEecCHHHHHhCCCHHHHHH--HHHHHHHHHhc
Confidence 257999998754 7999999 77778776643
No 115
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=99.82 E-value=6.3e-18 Score=194.28 Aligned_cols=285 Identities=17% Similarity=0.156 Sum_probs=193.0
Q ss_pred HhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001989 205 IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 205 ~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~ 284 (985)
..+|+...+.++++.+|+++|++. +.+++|++.++.+++.++. ++||+|+++...|.+....++ ..|++++
T Consensus 45 ~~~~~~~~~~~~~e~lA~~~g~~~--~~i~~g~~~a~~~~~~~l~---~~gd~Vl~~~~~h~s~~~~~~----~~g~~~~ 115 (370)
T TIGR02539 45 LDQITKPPIHDFLEDLAEFLGMDE--ARVTHGAREGKFAVMHALC---KEGDWVVLDGLAHYTSYVAAE----RAGLNVK 115 (370)
T ss_pred cccccchHHHHHHHHHHHHhCCCc--eEEECChHHHHHHHHHHhh---CCCCEEEECCcccHHHHHHHH----HcCCEEE
Confidence 456666788888999999999987 5567999988888777652 388999999999988876543 4677877
Q ss_pred EeCc----------hhhhc-cC-------CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CC
Q 001989 285 VSDL----------KDIDY-KS-------GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PP 344 (985)
Q Consensus 285 ~v~~----------~~l~~-l~-------~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~ 344 (985)
.++. ++|++ +. +++++|++++| |++|.+.|+++|+++||++|++++|| +.++.|.+. ..
T Consensus 116 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livD-ea~~~g~~~~~~ 194 (370)
T TIGR02539 116 EVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLN-CAYTVGRMPVSA 194 (370)
T ss_pred EEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEE-CccccCCcCCCH
Confidence 7643 45555 53 36788999998 68999999999999999999999995 355666543 33
Q ss_pred CcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccch
Q 001989 345 GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTA 423 (985)
Q Consensus 345 ~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~ 423 (985)
..+++|+++++. |+++. ||| +||+++++++++.+...... |.+.. .....+|++.
T Consensus 195 ~~~~~di~v~s~sK~~~~----~g~-~G~l~~~~~~i~~l~~~~~~----------~~~~~------~~~~~~~~~~--- 250 (370)
T TIGR02539 195 KEIGADFIVGSGHKSMAA----SGP-CGVLGMSEEWEDIVLRKSRY----------SPVKE------VELLGCTSRG--- 250 (370)
T ss_pred HHcCCCEEEeeCcccccC----CCC-EEEEEECHHHHhhhcccccC----------Cccce------eeeecccccc---
Confidence 468899999998 77752 333 89999999988876321111 11100 0001122221
Q ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC--CCCcceEEEecCC-----------HHHHHH
Q 001989 424 QALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG--LPFFDTVKVKCAD-----------AHAIAS 490 (985)
Q Consensus 424 ~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~--~~~~~~~~~~~~~-----------~~~v~~ 490 (985)
.+..+..+++ ... .+-++. ..+..+++++++++|+++| ++++. +...+.+.++.+. +..+.+
T Consensus 251 ~~~~~~~~al--~~~-~~~l~~-~~~~~~~~~~l~~~L~~~g-~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~ 325 (370)
T TIGR02539 251 APIVTMMASF--PHV-VERVKR-WDEEVKKTRWFVAELEDIG-FIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYE 325 (370)
T ss_pred cHHHHHHHHH--HHH-HHHHHH-HHHHHHHHHHHHHHHHhCC-cEEEccCCCcCceEEEECCchhHHhhhhccccHHHHH
Confidence 1222223332 111 122222 2344556789999999998 88752 2222334444432 346899
Q ss_pred HHHHcCce-eeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 491 AAYKIEMN-LRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 491 ~L~~~GI~-~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+|.++||. ++.-.++.+|++++ ..|++|+++++++|.+
T Consensus 326 ~L~e~GI~~ir~~~~~~iRis~~-~~t~e~i~~l~~~L~~ 364 (370)
T TIGR02539 326 ELKKRGIHGIRSGQTKYFKLSVY-GLTKEQVEYVVDSFEE 364 (370)
T ss_pred HHHhCCCccccCCcceEEEEEec-CCCHHHHHHHHHHHHH
Confidence 99999997 55322468999984 6799999999999974
No 116
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=99.82 E-value=1.2e-18 Score=201.90 Aligned_cols=296 Identities=16% Similarity=0.205 Sum_probs=197.6
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSV 707 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v 707 (985)
.|..+...++++.+++++|.+.. +.+++|++|+.+++.++. +++|+|++++..|.++...++..+.+.+.+
T Consensus 79 ~G~~~~~~~le~~ia~~~g~~~~-ii~~~~~~a~~~~~~~l~--------~~gd~vi~~~~~~~s~~~~~~~~~~~~~~~ 149 (393)
T TIGR01822 79 CGTQDIHKELEAKIAAFLGTEDT-ILYASCFDANGGLFETLL--------GAEDAIISDALNHASIIDGVRLCKAKRYRY 149 (393)
T ss_pred cCChHHHHHHHHHHHHHhCCCcE-EEECchHHHHHHHHHHhC--------CCCCEEEEeccccHHHHHHHHhcCCceEEe
Confidence 46667788999999999998754 444667777654443331 478999999988887776677777776555
Q ss_pred cCCCCCCCCHHHHHHHHHhc---CCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC------
Q 001989 708 GTDAKGNINIEELRKAAEAN---RDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT------ 777 (985)
Q Consensus 708 ~~d~~g~iD~e~L~~~i~~~---~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~------ 777 (985)
+ .+|+++|++++++. +.+|++|++.++ |.+|.+. |+++|+++|+++|+++++|++|..+..+..
T Consensus 150 ~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~-~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~ 223 (393)
T TIGR01822 150 A-----NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIA-PLDEICDLADKYDALVMVDECHATGFLGPTGRGSHE 223 (393)
T ss_pred C-----CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcC-CHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHH
Confidence 4 37999999999742 127888888776 5789998 899999999999999999999854432210
Q ss_pred CCC-ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHH
Q 001989 778 SPG-YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 778 ~pg-~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a 856 (985)
..+ ..++|++++++||++ +|+++|++++++++.+.+..... ....++.. ....+.++
T Consensus 224 ~~~~~~~~di~~~s~sK~l------~g~r~G~~~~~~~~~~~l~~~~~-----------~~~~~~~~-----~~~~~~a~ 281 (393)
T TIGR01822 224 LCGVMGRVDIITGTLGKAL------GGASGGFTTARKEVVELLRQRSR-----------PYLFSNSL-----PPAVVGAS 281 (393)
T ss_pred hcCCCCCCeEEEEEChHHh------hCCCcEEEEeCHHHHHHHHHhCc-----------cceecCCC-----CHHHHHHH
Confidence 011 125799999999997 35678999988766554321100 00001100 11112223
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccC
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP 935 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~ 935 (985)
.+++..+ ++.++..++..++++++.+.|++ ++++. ++..+. +.+.+.. +.+..++++.|.++||.+.
T Consensus 282 ~~al~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~---~~i~~~~-----~~~~~~l~~~L~~~gI~v~ 349 (393)
T TIGR01822 282 IKVLEML--EASNELRDRLWANTRYFRERMEAAGFDIK--PADHPI---IPVMLYD-----AVLAQRFARRLLEEGIYVT 349 (393)
T ss_pred HHHHHHH--hcCHHHHHHHHHHHHHHHHHHHHcCCCCC--CCCCCE---EEEEeCC-----HHHHHHHHHHHHHCCeeEe
Confidence 3444443 23445566778889999999976 55542 211221 2233321 1346789999999999876
Q ss_pred CCCCCC----CCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 936 TMSWPV----PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 936 ~~~~p~----~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
...+|. ...+|++++..+|++|||+ +++.|+++.+.+
T Consensus 350 ~~~~~~~~~~~~~iRis~~~~~t~edi~~--~~~~l~~~~~~~ 390 (393)
T TIGR01822 350 GFFYPVVPKGQARIRVQISAAHTEEQLDR--AVEAFTRIGREL 390 (393)
T ss_pred eeCCCCCCCCCceEEEEECCCCCHHHHHH--HHHHHHHHHHHh
Confidence 443441 2469999999999999999 888888887654
No 117
>PRK07179 hypothetical protein; Provisional
Probab=99.82 E-value=1.6e-18 Score=201.93 Aligned_cols=288 Identities=16% Similarity=0.155 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
...++++.+++++|.+.+ +++++|++|+.+++.++. .+++.|+++...|.+....+...|++++.++.
T Consensus 100 ~~~~le~~la~~~g~~~~-~~~~sG~~An~~~l~~l~--------~~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~~--- 167 (407)
T PRK07179 100 PKPQFEKKLAAFTGFESC-LLCQSGWAANVGLLQTIA--------DPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRH--- 167 (407)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHhC--------CCCCEEEEECCcCHHHHHHHHHCCCeEEEecC---
Confidence 455788999999998765 667888887766555432 35688998888787666666778888876654
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-C--CCc----cCC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-S--PGY----IGA 784 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-~--pg~----~g~ 784 (985)
.|+++|++++++ .++++|+++++ |++|.+. |+++|.++|+++|+++|+|++|..+..+.. . ... .++
T Consensus 168 --~d~~~l~~~l~~--~~~~lV~v~~v~n~tG~i~-pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~v 242 (407)
T PRK07179 168 --NDVDHLRRQIER--HGPGIIVVDSVYSTTGTIA-PLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRV 242 (407)
T ss_pred --CCHHHHHHHHHh--cCCeEEEECCCCCCCCccc-cHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCC
Confidence 599999999972 24778888887 4799998 899999999999999999999964332110 0 011 246
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
|+++.|+||+++ +++|++++++++.+.++.... ....+ +++..+. ++++.+.+..+.
T Consensus 243 di~~~S~sK~~g-------~~~G~l~~~~~~~~~~~~~~~-----------~~~~~---~t~~~~~--~aa~~aal~~~~ 299 (407)
T PRK07179 243 HFITASLAKAFA-------GRAGIITCPRELAEYVPFVSY-----------PAIFS---STLLPHE--IAGLEATLEVIE 299 (407)
T ss_pred CEEEeechHhhh-------ccCeEEEeCHHHHHHHHHhCc-----------CeeeC---CCCCHHH--HHHHHHHHHHHh
Confidence 999999999983 247899988776554421100 00001 1111111 112223344442
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC---
Q 001989 865 SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP--- 940 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p--- 940 (985)
. ..+..++..+++++++++|++ ++++. +. +. .+.+.+.. ..+...+.+.|.++||.+.....|
T Consensus 300 ~--~~~~~~~l~~~~~~l~~~L~~~g~~v~--~~-~~---i~~l~~~~-----~~~~~~~~~~L~~~GI~~~~~~~p~~~ 366 (407)
T PRK07179 300 S--ADDRRARLHANARFLREGLSELGYNIR--SE-SQ---IIALETGS-----ERNTEVLRDALEERNVFGAVFCAPATP 366 (407)
T ss_pred c--CHHHHHHHHHHHHHHHHHHHHcCCCCC--CC-CC---EEEEEeCC-----HHHHHHHHHHHHHCCceEeeecCCCCC
Confidence 2 234556788889999999987 45443 21 22 22333320 124567888999999985432222
Q ss_pred -CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 941 -VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 941 -~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
..+.+||+++..+|++|||+ ++++|++++++..
T Consensus 367 ~~~~~lRis~~~~~t~edi~~--~~~~l~~~~~~~~ 400 (407)
T PRK07179 367 KNRNLIRLSLNADLTASDLDR--VLEVCREARDEVD 400 (407)
T ss_pred CCCceEEEEECCCCCHHHHHH--HHHHHHHHHHhhC
Confidence 24789999999999999999 7788988887644
No 118
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=99.82 E-value=1.5e-18 Score=192.27 Aligned_cols=322 Identities=17% Similarity=0.182 Sum_probs=201.1
Q ss_pred ecCCCCCCCCCcHHHHHHHHhCCcccccc--CCChhhHhhhHHH--HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHH
Q 001989 170 FIGMGYYNTHVPPVILRNIMENPAWYTQY--TPYQAEIAQGRLE--SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMA 245 (985)
Q Consensus 170 ~lG~g~y~~~~p~~v~~~i~~~~~~~t~~--~pyq~e~sqg~l~--~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~ 245 (985)
|+..+... .+|+.|.+++.. |++.| +|-.. +-||-. ++.++|+.+|+|+|+++.++++++|+|.++..++
T Consensus 46 yld~~at~-p~~~~Vldam~~---~~~~~~~nPh~~--~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlvl 119 (428)
T KOG1549|consen 46 YLDNQATG-PMDPRVLDAMLP---YLLEYLGNPHSR--SYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNLVL 119 (428)
T ss_pred EEecCcCC-CCCHHHHHHHHH---HHHHhhcCCCcc--ccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHHH
Confidence 44444433 266666545443 44444 33222 334443 4899999999999999999999999995544443
Q ss_pred HHhhhhcCCCC----EEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch--------hhhc-cCCCEeEEEEEcC-CCCee
Q 001989 246 MCNNIQKGKKK----TFIIASNCHPQTIDICITRADGFDIKVVVSDLK--------DIDY-KSGDVCGVLVQYP-GTEGE 311 (985)
Q Consensus 246 ~a~~~~~~~g~----~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~--------~l~~-l~~~t~~V~v~~p-n~~G~ 311 (985)
....+. .++ +||+...+||++...|+.+. ..|++++++|++ ++++ ++++|++|.+.+. |..|+
T Consensus 120 ~~v~~~--~~~~~~k~iitl~~eH~~v~~s~~~l~-~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv 196 (428)
T KOG1549|consen 120 KGVARF--FGDKTKKHIITLQTEHPCVLDSCRALQ-EEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGV 196 (428)
T ss_pred HHhhcc--ccccccceEEEecccCcchhHHHHHHH-hcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccc
Confidence 332222 333 89999999999999999864 578999998763 4555 8999999999875 78999
Q ss_pred eccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEEecCccccccCCCCCCcEEEEEEchh--hHhcCCCcee
Q 001989 312 VLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQE--YKRMMPGRIV 388 (985)
Q Consensus 312 v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~--~~~~lp~~~v 388 (985)
+.|++||+++|++.|+.+++|+ .++.|.. .+..++|+|+++.++++| +|.|++|+|||+++ .++ +.+.+.
T Consensus 197 ~~Pv~EI~~icr~~~v~v~~Da-AQavG~i~vDV~eln~D~~s~s~HK~-----ygp~~iGaLYvr~~~~~~~-~~p~~~ 269 (428)
T KOG1549|consen 197 LQPVKEIVKICREEGVQVHVDA-AQAVGKIPVDVQELNADFLSISAHKI-----YGPPGIGALYVRRKRPRLR-VEPPLS 269 (428)
T ss_pred cccHHHHHHHhCcCCcEEEeeh-hhhcCCccccHHHcCchheeeecccc-----cCCCcceEEEEccCCCccc-ccCccc
Confidence 9999999999999999999954 4567755 356899999999999666 34577999999972 222 234455
Q ss_pred eeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc-CCCe
Q 001989 389 GVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTV 467 (985)
Q Consensus 389 G~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~ 467 (985)
| |.+ -| ..+.||-++..+- ++.+++-.......+.+.+.++ +...+..++.. ...+
T Consensus 270 G------Ggq-------~r----~~rsGT~~~~~~~---~~gsA~e~~~~~~~~~~~~~~~---~~~~ll~~i~~~~~~~ 326 (428)
T KOG1549|consen 270 G------GGQ-------ER----GLRSGTVATPLAV---GLGSAAEFVNKEMAYDEAIIKR---LSEKLLMGIGQSLPEV 326 (428)
T ss_pred C------Ccc-------cc----ccccCCcCchhhh---hhHHHHHHHHhhcchhHHHHHH---HHHHHHHHHhhhCchh
Confidence 5 211 11 1235776664333 3344442122222333444443 45555555533 2112
Q ss_pred EEcCC-C--CcceEEEecC--CHHHHHHHHHH----cCce-----eee------------ecCCeEEEEeccCCCHHHHH
Q 001989 468 EVQGL-P--FFDTVKVKCA--DAHAIASAAYK----IEMN-----LRV------------VDSNTVTASFDETTTLEDVD 521 (985)
Q Consensus 468 ~~~~~-~--~~~~~~~~~~--~~~~v~~~L~~----~GI~-----~~~------------~~~~~lris~t~~~t~edId 521 (985)
.+.+. + ....+.|.++ ....+...+.+ -|.. +++ .....+|+|+.-|+|.+|+|
T Consensus 327 ~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~s~~a~~~~~~epsy~l~~~G~~~~~~~~~iRis~G~y~t~~di~ 406 (428)
T KOG1549|consen 327 TLNGSGKSRYPGLVSLSFPYVEGESLLMDLKDVALSSGSACTSASLEPSYVLRAIGVDEDLAHSSIRISIGRYTTEEDID 406 (428)
T ss_pred hccCCcccccccceeeecccccCcchhhhhhhhhhcccchhhcCCCCcchhhhhcCcchhhhcceeEEeeeeeCcHHHHH
Confidence 33322 1 1123344443 11111112211 1111 010 01367999999999999999
Q ss_pred HHHHHHhCC
Q 001989 522 KLFIVFAGG 530 (985)
Q Consensus 522 ~li~aL~~~ 530 (985)
++++++.+.
T Consensus 407 ~~~~~i~~~ 415 (428)
T KOG1549|consen 407 YLVDAIKKL 415 (428)
T ss_pred HHHHHHHHH
Confidence 999999753
No 119
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=99.82 E-value=1.1e-18 Score=198.28 Aligned_cols=349 Identities=15% Similarity=0.159 Sum_probs=229.1
Q ss_pred CCHHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccc-cCCCCchhhhhhHHHHHHHHHHHHHHHhC
Q 001989 568 HTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTITG 646 (985)
Q Consensus 568 ~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~-~~p~~p~e~~~G~~~~~~e~~~~la~l~G 646 (985)
+-+.+..+||+.+++-+ ...+|+++|.+..+.+.+.....+..+ +.++. ...++.+.|.+++.
T Consensus 50 l~DvdG~~ylDf~sgi~------v~~~GH~hP~Vv~Av~~q~~~~~h~~~~~~~~e----------~~v~~ae~L~~~~p 113 (447)
T COG0160 50 LYDVDGNEYLDFLSGIA------VLNLGHNHPRVVEAVKRQLAKLNHTHTRDLYYE----------PYVELAEKLTALAP 113 (447)
T ss_pred EEeCCCCEEEEcccCcc------hhccCCCCHHHHHHHHHHHHHhhcccCCcccch----------hHHHHHHHHHHhCC
Confidence 34567778888877655 456899999998887777644332222 22322 23467777888776
Q ss_pred CC--ccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEE-EcCCCCcccHHHHHH--------CC-----cEEEEEcCC
Q 001989 647 FD--SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCI-IPVSAHGTNPATAAM--------CG-----MKIVSVGTD 710 (985)
Q Consensus 647 ~~--~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~II-v~~~~Hg~~~~~a~~--------~G-----~~vv~v~~d 710 (985)
.+ ...++.+||++|++++++.+|.| +++..|| +...+||....++.+ .| -.|..+|..
T Consensus 114 ~~~~~~~~f~~sGaeA~E~AiKiAr~~------Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp 187 (447)
T COG0160 114 GSGLKKVFFGNSGAEAVEAAIKIARAY------TGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYP 187 (447)
T ss_pred cccCCeEEecCCcHHHHHHHHHHHHHH------hCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCC
Confidence 53 23577899999999999999986 2444555 477899977665432 11 136777763
Q ss_pred CCC------------CCCHHHHHHHHHhc---CCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccc
Q 001989 711 AKG------------NINIEELRKAAEAN---RDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMN 771 (985)
Q Consensus 711 ~~g------------~iD~e~L~~~i~~~---~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~ 771 (985)
... .-..+.++..+... ..++++++++-. ..-|++.+ -++++.++|+++|+++|+|++|
T Consensus 188 ~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQ-- 265 (447)
T COG0160 188 NPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQ-- 265 (447)
T ss_pred ccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc--
Confidence 211 11244456655421 246788888764 46777763 3899999999999999999887
Q ss_pred cccCCCCCCccC--------CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCC
Q 001989 772 AQVGLTSPGYIG--------ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIA 843 (985)
Q Consensus 772 ~~~~l~~pg~~g--------~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~ 843 (985)
.|++++|.|. +||++++ |.++ . |--+|.++.++++....|+.. .
T Consensus 266 --tG~GRTG~~fa~E~~gv~PDivt~a--K~ig----~-G~Pl~avv~r~ei~~~~~g~~-------------------~ 317 (447)
T COG0160 266 --TGFGRTGKMFAFEHFGVEPDIVTLA--KSLG----G-GLPLSAVVGRAEIMDWPPGGH-------------------G 317 (447)
T ss_pred --cCCCccccchhhhhcCCCCCEEEec--cccc----C-CCceeEEeccHHhcccCCccc-------------------C
Confidence 5667777653 7999774 7663 3 444666777888877544432 1
Q ss_pred CcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc---cCCeeecCCCCceeeEEEEE-ecCccccCCCC
Q 001989 844 AAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---HYPILFRGVNGTVAHEFIVD-LRGLKNTAGIE 919 (985)
Q Consensus 844 s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~---g~~l~~~~~~~~~~~~~iv~-~~~~~~~~g~~ 919 (985)
.++.|++.+++++.+.|..+..+++. ++..+..+||+++|.+ -+.++-.-.....+..+-+. .+..+++....
T Consensus 318 ~Tf~GNpva~Aaa~AvL~vie~e~L~---~~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~ 394 (447)
T COG0160 318 GTFGGNPVACAAALAVLDVIEEENLL---ERAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRDTKEPDAEL 394 (447)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHccHH---HHHHHHHHHHHHHHHHHHhhcCceecccccceEEEEEEecCCCCCCCCHHH
Confidence 12556888888899999988877665 4667788999998864 23332111111122222111 11001111122
Q ss_pred HHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 920 PEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 920 ~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
...+++++.++|+.+.++. +..+.|||.|+...|+||+|+ ++++|++++..+
T Consensus 395 ~~~i~~~~~~~Glil~~~G-~~~nviRi~PPL~is~e~~d~--~l~il~~al~~~ 446 (447)
T COG0160 395 AAKIVARAFERGLLLLTCG-PHGNVLRILPPLTISDEELDE--GLDILEEALKEA 446 (447)
T ss_pred HHHHHHHHHHcCCEEeccC-CCCcEEEEeCCcccCHHHHHH--HHHHHHHHHHhh
Confidence 5678899999999876554 235899999999999999999 889999888754
No 120
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=99.82 E-value=2.8e-19 Score=201.80 Aligned_cols=286 Identities=22% Similarity=0.242 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHHhCCC----ccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH---HHH-------
Q 001989 632 EMFNNLGEWLCTITGFD----SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP---ATA------- 697 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~----~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~---~~a------- 697 (985)
++..-+++.++++||++ .+++++.||+.|+.++++++. +++|+|+..+..||-|. ...
T Consensus 66 ~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aLl--------~pGD~Im~l~l~~GGHlshg~~~~~~~~~~ 137 (399)
T PF00464_consen 66 EIEELAIERAKELFGAEPKEWYANVQPHSGSQANLAVYMALL--------KPGDTIMGLSLPHGGHLSHGSSVNFKKISA 137 (399)
T ss_dssp HHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHHHT---------TT-EEEEEEGGGT--GGGT-TTSHSBSSH
T ss_pred HHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHHHHHHHH--------hhcCcEEecChhhccccccccccccccccc
Confidence 34444567788999999 788999999999988777664 47899998776676553 221
Q ss_pred HHCCcEEEEEcCC-CCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccc---
Q 001989 698 AMCGMKIVSVGTD-AKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ--- 773 (985)
Q Consensus 698 ~~~G~~vv~v~~d-~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~--- 773 (985)
....++++.+++| +++.+|.|++++.+.+++| ++|++...++.-.+ |++++.++|++.|++|++|++|..++
T Consensus 138 ~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kP--klIi~G~S~y~~~~--d~~~~reIad~vga~l~~D~sH~~GLIa~ 213 (399)
T PF00464_consen 138 SGLYFESVPYPVDPDTGLIDYDELEKLAKEHKP--KLIICGASSYPRPI--DFKRFREIADEVGAYLMADISHIAGLIAG 213 (399)
T ss_dssp HHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH----SEEEEE-SSTSS-----HHHHHHHHHHTT-EEEEE-TTTHHHHHT
T ss_pred ccceEEEEeeeeecCCCeECHHHHHHHHhhcCC--CEEEECchhccCcc--CHHHHHHHHHhcCcEEEecccccccceeh
Confidence 2245788889998 4599999999999987544 45777655543333 79999999999999999999996544
Q ss_pred cCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcc--------------cccCcCCCCccccCCCCCCCCCCCCC
Q 001989 774 VGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK--------------HLAPFLPSHPVVSTGGIPAPEKSQPL 839 (985)
Q Consensus 774 ~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~--------------~l~~~lp~~~~g~~~~~~~~~~~~~~ 839 (985)
+.+.+|-.+ +|++++++||+| .||..|+|.+++ ++.+.+...++
T Consensus 214 g~~~~P~~~-ADvvt~sThKtl------~GPrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avf--------------- 271 (399)
T PF00464_consen 214 GLFPNPFPY-ADVVTGSTHKTL------RGPRGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVF--------------- 271 (399)
T ss_dssp TSS--GCCT-SSEEEEESSGGG-------SSS-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHT---------------
T ss_pred heecCcccc-ceEEEeeccccc------cccCceEEEEcCCccccCCcccccHHHHHHHhccccC---------------
Confidence 334577765 999999999999 589999999992 23222211110
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCC
Q 001989 840 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGI 918 (985)
Q Consensus 840 ~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~ 918 (985)
+...+++.-+ -.++.|.+..+.+ ...++++++++.+|++.|++.|.+ |++++.. ++..|.++++++. .++
T Consensus 272 P~~qg~~h~~-~iaalAval~ea~-~~~fk~Ya~qVv~NAk~La~~L~~~G~~v~~g---gTd~H~vlvd~~~----~~~ 342 (399)
T PF00464_consen 272 PGLQGGPHMH-RIAALAVALKEAL-SPEFKEYAKQVVKNAKALAEALQERGFKVVTG---GTDNHQVLVDLRS----FGI 342 (399)
T ss_dssp TTT-SS--HH-HHHHHHHHHHHHT-SHHHHHHHHHHHHHHHHHHHHHHHTT-EEGGG---S-SSSEEEEEGGG----GTS
T ss_pred CCcccCcchh-HHHHHHHHHhccc-CHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEC---CCCCCeEEEEecc----ccc
Confidence 1111111111 1222233333333 344689999999999999999987 8888653 3566788899863 367
Q ss_pred CHHHHHHHHHHCCCccCCCCCC------CCCEEEEeccC----CCCHHHHHH
Q 001989 919 EPEDVAKRLMDYGFHGPTMSWP------VPGTLMIEPTE----SESKSWTGI 960 (985)
Q Consensus 919 ~~~~v~~~L~~~Gi~~~~~~~p------~~~~lris~t~----~~t~eeId~ 960 (985)
++.++.++|.+.||.++...-| .+..|||...+ .-.++|+..
T Consensus 343 ~g~~a~~~Le~~gI~vnkn~iP~d~~~~~~sGlRlGT~~lT~rG~~e~dm~~ 394 (399)
T PF00464_consen 343 DGKEAEKALEEAGIIVNKNTIPGDRSPFVPSGLRLGTPALTRRGMKEEDMKE 394 (399)
T ss_dssp -HHHHHHHHHHTTEE-EEE--TTTSTTTT-SEEEEESHHHHHTT--HHHHHH
T ss_pred chHHHHHHHHhcCeeecccccCCCCCCCCCCEEEECCHHHHhCCCCHHHHHH
Confidence 8889999999999988632211 34789998764 345666665
No 121
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=99.82 E-value=2.9e-18 Score=201.17 Aligned_cols=302 Identities=18% Similarity=0.127 Sum_probs=195.4
Q ss_pred HHHHHHHHhCCCc----cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH------HHCCc--E-
Q 001989 637 LGEWLCTITGFDS----FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA------AMCGM--K- 703 (985)
Q Consensus 637 ~~~~la~l~G~~~----~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a------~~~G~--~- 703 (985)
+++..+++|+.+. .+++++||+.|+++++.++. +++|+|+..+..||.|..-+ ...+. .
T Consensus 85 ~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~--------~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~ 156 (475)
T PLN03226 85 CQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALL--------QPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYF 156 (475)
T ss_pred HHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhC--------CCCCEEEECCCCcCcchhhhhhhcccccccceEEE
Confidence 4446778888776 45677999999987777653 47899998655455443221 11222 2
Q ss_pred -EEEEcCC-CCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC---C
Q 001989 704 -IVSVGTD-AKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT---S 778 (985)
Q Consensus 704 -vv~v~~d-~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~---~ 778 (985)
++.++++ ++|.+|+++|++++.++ ++++|++.. +.+|... |+++|.++|+++|++++||+||..++.+.. .
T Consensus 157 ~~~~y~~~~~~g~iD~d~Le~~l~~~--~pklIv~~~-S~~s~~~-D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~ 232 (475)
T PLN03226 157 ESMPYRLDESTGLIDYDKLEKKAMLF--RPKLIIAGA-SAYPRDW-DYARMRKIADKVGALLMCDMAHISGLVAAQEAAS 232 (475)
T ss_pred EeeeeeecCCCCCcCHHHHHHHHhhc--CCeEEEEec-CcCCCcc-CHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCC
Confidence 2233444 35899999999999743 455555533 4467766 899999999999999999999976654321 2
Q ss_pred CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC---CCCCCCCCCCCCCCcchhhhHHHHH
Q 001989 779 PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI---PAPEKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 779 pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~---~~~~~~~~~~~i~s~~~g~~~~~~~ 855 (985)
|. .++|++++++|||| +||.+|+|+++++..+.+.+.. +...+. ....+.... .+++ +...+++
T Consensus 233 p~-~~~Div~~t~hK~L------~GP~Gg~I~~~~~~~~~~~~g~-~~~~d~~~~i~~a~~~~~---~g~p--~~~~iaa 299 (475)
T PLN03226 233 PF-EYCDVVTTTTHKSL------RGPRGGMIFFRKGPKPPKGQGE-GAVYDYEDKINFAVFPGL---QGGP--HNHTIAA 299 (475)
T ss_pred CC-CCCeEEEecCcccc------cCCCceEEEEchhhcccccCCC-ccHHHHHHHhccccCCcc---CCCc--hHHHHHH
Confidence 32 26999999999999 4675688998876543332210 000000 000000011 1111 1112222
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCcc
Q 001989 856 SYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHG 934 (985)
Q Consensus 856 a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~ 934 (985)
..+.+..+...+++++.++..+++++|++.|.+ |+++...+ ...|.+++++.. .+++..++.+.|.+.||.+
T Consensus 300 l~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~G~~l~~~~---t~~hi~lv~~~~----~gi~~~~~~~~L~~~~I~~ 372 (475)
T PLN03226 300 LAVALKQAMTPEFKAYQKQVKANAAALANRLMSKGYKLVTGG---TDNHLVLWDLRP----LGLTGSRVEKVLDLAHITL 372 (475)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEcCC---CCCCEEEEEccC----CCCCHHHHHHHHHHCCCEE
Confidence 335566665667777788999999999999987 77775432 224567788752 3678889999999999987
Q ss_pred CCCC-----CC-CCCEEEE----eccCCCCHHHHHHHHccCChhHHHH
Q 001989 935 PTMS-----WP-VPGTLMI----EPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 935 ~~~~-----~p-~~~~lri----s~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.... .| .+.++|+ -.+...+++|+++ +++.|.+++.
T Consensus 373 nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~--ia~~i~~~~~ 418 (475)
T PLN03226 373 NKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEK--VAEFLHRAVT 418 (475)
T ss_pred CCCCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHH--HHHHHHHHHH
Confidence 6421 11 2467888 3446788999999 7777777776
No 122
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=99.82 E-value=7.9e-18 Score=194.61 Aligned_cols=284 Identities=17% Similarity=0.124 Sum_probs=193.9
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 207 QGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
.+....+.++++.+|+++|++. +.+++|+|.++.+++.++ . ++||+|++++..|.+....++ ..|++++.+
T Consensus 59 ~~~~~~~~~l~~~lA~~~g~~~--~~~~~g~t~a~~~al~~l-~--~~gd~Vlv~~~~h~s~~~~~~----~~G~~~~~v 129 (387)
T PRK09331 59 QIKKPPIADFHEDLAEFLGMDE--ARVTHGAREGKFAVMHSL-C--KKGDYVVLDGLAHYTSYVAAE----RAGLNVREV 129 (387)
T ss_pred cccChHHHHHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHh-c--CCCCEEEECCCchHHHHHHHH----HcCCEEEEE
Confidence 3344578899999999999975 667899998877776655 2 389999999999999987754 358888877
Q ss_pred Cc----------hhhhc-cC-------CCEeEEEEEcCC-CCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCc
Q 001989 287 DL----------KDIDY-KS-------GDVCGVLVQYPG-TEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGE 346 (985)
Q Consensus 287 ~~----------~~l~~-l~-------~~t~~V~v~~pn-~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~ 346 (985)
+. +++++ +. +++++|++++|+ .+|.+.|+++|+++||++|++++||+ .+++|.+. +..+
T Consensus 130 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~-a~~~g~~~~~~~~ 208 (387)
T PRK09331 130 PKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNG-AYTVGRMPVDGKK 208 (387)
T ss_pred eCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEEC-CcccCCcCCCHHH
Confidence 54 34444 43 378999999985 59999999999999999999999953 56777543 3467
Q ss_pred ccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhH
Q 001989 347 LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQA 425 (985)
Q Consensus 347 ~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~ 425 (985)
+|+|++++++ |+|++ +|++||+++++++++.+... .+.|... ......+|++. .+
T Consensus 209 ~g~D~~~~s~~K~l~~-----~~~~G~l~~~~~~i~~~~~~----------~~~~~~~------~~~~~~~~~~~---~~ 264 (387)
T PRK09331 209 LGADFIVGSGHKSMAA-----SAPSGVLATTEEYADKVFRT----------SRKFGVK------EVELLGCTLRG---AP 264 (387)
T ss_pred cCCCEEEeeCcccccC-----CCCEEEEEECHHHHhhcccc----------cCCCccc------ceeeeceecCc---hH
Confidence 9999999998 76753 35689999999887765211 0111100 00001111111 23
Q ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC-CCeEEcCC-CC-cceEEEecCC-----------HHHHHHH
Q 001989 426 LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL-GTVEVQGL-PF-FDTVKVKCAD-----------AHAIASA 491 (985)
Q Consensus 426 l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~-g~~~~~~~-~~-~~~~~~~~~~-----------~~~v~~~ 491 (985)
.+++++++ ..+- +-+ +..++.++++++++++|+++ | ++++.. +. .+.+.+..+. +.++.+.
T Consensus 265 ~~~~~aal--~~~~-~~~-~~~~~~~~~~~~l~~~L~~l~g-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (387)
T PRK09331 265 LVTLMASF--PHVV-ERV-KRWDEEVKKARWFVDELEKIEG-FKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEE 339 (387)
T ss_pred HHHHHHHH--HHHH-HHH-HHHHHHHHHHHHHHHHHhcCCC-EEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHH
Confidence 44444444 1111 112 34556678999999999999 6 998732 11 1122333221 3568999
Q ss_pred HHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 492 AYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 492 L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
|.++||.......+.++...+..+|++|+++++++|++
T Consensus 340 L~~~gI~~~~~~~~~i~ri~~~g~t~~di~~l~~aL~~ 377 (387)
T PRK09331 340 LKKRGIHGIKPGATKEFKLSTYGLTWEQVEYVADAFKE 377 (387)
T ss_pred HHHcCceEEccCCceEEEEEeccCCHHHHHHHHHHHHH
Confidence 99999974322335566666666899999999999984
No 123
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=99.82 E-value=1.9e-18 Score=197.22 Aligned_cols=314 Identities=13% Similarity=0.079 Sum_probs=205.6
Q ss_pred CCCCcHHHHHHHHhCCcccccc---CCChhhHh---hhHHHHHHHHHHHHHHhcCCC-Ccceeeccc-hHHHHHHHHHHh
Q 001989 177 NTHVPPVILRNIMENPAWYTQY---TPYQAEIA---QGRLESLLNFQTMIADLTGLP-MSNASLLDE-GTAAAEAMAMCN 248 (985)
Q Consensus 177 ~~~~p~~v~~~i~~~~~~~t~~---~pyq~e~s---qg~l~~i~e~q~~ia~L~g~~-~~~~sl~~~-~ta~~ea~~~a~ 248 (985)
|..+|+.|.+++.. ++..| +-...+++ ....+.+.+.++.+++|+|++ ..++.++.| +|.+++++..++
T Consensus 7 p~~~p~~V~~a~~~---~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l 83 (355)
T cd00611 7 PAALPEEVLEQAQK---ELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNL 83 (355)
T ss_pred CCCCCHHHHHHHHH---HHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhc
Confidence 45678777655543 23222 11111123 444578899999999999984 456878877 999999888765
Q ss_pred hhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch------h---hh-c-cCCCEeEEEEEc-CCCCeeeccHH
Q 001989 249 NIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK------D---ID-Y-KSGDVCGVLVQY-PGTEGEVLDYG 316 (985)
Q Consensus 249 ~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~------~---l~-~-l~~~t~~V~v~~-pn~~G~v~di~ 316 (985)
....+++++|++....|.+ ..+++..|+++++++.+ + +. . ++++|++|.+++ .|.+|.+. .
T Consensus 84 ~~~~~~~~~i~~g~~~~~~-----~~~a~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~--~ 156 (355)
T cd00611 84 LGDKGTADYVVTGAWSAKA-----AKEAKRYGGVVVIVAAKEEGKYTKIPDVETWDLAPDAAYVHYCSNETIHGVEF--D 156 (355)
T ss_pred CCCCCeEEEEECCHHHHHH-----HHHHHhcCCCcEEEecccccCCCCCCCHhhcCCCCCCCEEEEeCCcccccEEc--c
Confidence 2111256666653333322 22345678887776532 2 12 2 578899998876 58999973 2
Q ss_pred HHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCC
Q 001989 317 DFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSS 395 (985)
Q Consensus 317 ~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~ 395 (985)
++++.+|++++||+ ..++|.. .+..++|+ ++.++||+. |.||+|++++++++++++++.....
T Consensus 157 ---~i~~~~g~~~~VDa-~qs~g~~~idv~~~~~--~~ss~~K~l-----GP~G~g~l~~~~~~~~~~~~~~~~~----- 220 (355)
T cd00611 157 ---EVPDTGGVPLVADM-SSNILSRPIDVSKFGV--IYAGAQKNL-----GPAGVTVVIVRKDLLGKARKITPSM----- 220 (355)
T ss_pred ---eecccCCCeEEEEc-cccccCCCCCHHHhCE--EEeeccccc-----CCCceEEEEECHHHHhhcccCCCCc-----
Confidence 34455999999954 3456544 34456664 455566553 3467999999999998876532110
Q ss_pred CCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHHHHHHhcC-CCeE-EcCC
Q 001989 396 GKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKL-GTVE-VQGL 472 (985)
Q Consensus 396 g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~-g~~~-~~~~ 472 (985)
+.+.+.... ....+|+|+ .+++++.+++ .++..+ |++++.+|..+++++++++|+++ | +. ...+
T Consensus 221 ------~~~~~~~~~-~~~~~Tpn~---~~i~~L~aal--~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~g-l~~~~~~ 287 (355)
T cd00611 221 ------LNYKTHADN-NSLYNTPPT---FAIYMMGLVL--KWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNG-FYRGPVD 287 (355)
T ss_pred ------ccHHHHHhc-CCCCCCChH---HHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHHHHHHhCcc-ccccCCC
Confidence 001000000 012478887 6788888887 677777 79999999999999999999999 6 63 2211
Q ss_pred --CCcc-eEEEecCC---HHHHHHHHHHcCceeeee--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 473 --PFFD-TVKVKCAD---AHAIASAAYKIEMNLRVV--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 473 --~~~~-~~~~~~~~---~~~v~~~L~~~GI~~~~~--~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.... .++|+.++ ..++.+.+.++|+..... ..+.+|+|+..+||+||||+|+++|++
T Consensus 288 ~~~rs~~vvsf~~~~~~l~~~~~~~~~r~G~~~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~ 352 (355)
T cd00611 288 KRARSRMNVPFRLGKEELEKEFLKEAEAAGMIGLKGHRSVGGIRASIYNALSLEGVQALADFMKE 352 (355)
T ss_pred HHHcCceEEEEEcCChhhhHHHHHHHHHCCCcccCCCcccCeEEEEccCCCCHHHHHHHHHHHHH
Confidence 1232 36777665 345556777789975433 247899999999999999999999974
No 124
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=99.81 E-value=2.8e-18 Score=197.24 Aligned_cols=315 Identities=17% Similarity=0.157 Sum_probs=200.4
Q ss_pred ccceecCCCCCCCCCcHHHHHHHHhCCcccc--ccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHH
Q 001989 166 VYKSFIGMGYYNTHVPPVILRNIMENPAWYT--QYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEA 243 (985)
Q Consensus 166 ~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t--~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea 243 (985)
..++|||....|...|+++. ++..-..-+. ..+...++...|..+.+.++++.+|+++|.+. +.++++|+.+..+
T Consensus 10 ~s~~YL~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~--~l~~~sG~~a~~~ 86 (370)
T PRK05937 10 VTNDFLGFSRSDTLVHEVEK-RYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPE--AFIVPSGYMANLG 86 (370)
T ss_pred ECCCccCCCCCHHHHHHHHH-HHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCe--EEEECChHHHHHH
Confidence 45678888876666666553 3332110001 12445667888999999999999999999975 3455666544433
Q ss_pred HHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchhhhc-cC------CCEeEEEEEcC-CCCeeeccH
Q 001989 244 MAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDY-KS------GDVCGVLVQYP-GTEGEVLDY 315 (985)
Q Consensus 244 ~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~~-l~------~~t~~V~v~~p-n~~G~v~di 315 (985)
+...+ .++++.|+++..+|+++...++.. ....+.+.+.|+++|++ ++ +++.+|++.++ |++|.+.|+
T Consensus 87 ~~~~~---~~~~d~ii~d~~~H~sv~~~~~~~-~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~pl 162 (370)
T PRK05937 87 LCAHL---SSVTDYVLWDEQVHISVVYSLSVI-SGWHQSFRHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPL 162 (370)
T ss_pred HHHHh---CCCCCEEEEEhhhhHHHHHHHHHc-CCceEEecCCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccCH
Confidence 32222 136788999999999999998753 22334444567777776 53 34667777776 689999999
Q ss_pred HHHHHHHHhCCcEEEEEecCccccCCCCCC-----cccc---eEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCc
Q 001989 316 GDFIKNAHANGVKVVMATDLLALTILKPPG-----ELGA---DIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGR 386 (985)
Q Consensus 316 ~~I~~~a~~~galliV~a~~~~lg~l~~~~-----~~Ga---Di~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~ 386 (985)
++|.++||++|++++|| +.++.|.+...+ .||+ |+++.+. |.+| ++|+|+++.++ ....+..
T Consensus 163 ~eI~~l~~~~~~~livD-ea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g------~~G~~vl~~~~-~~~~~~~- 233 (370)
T PRK05937 163 EQIIALSKKYHAHLIVD-EAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALG------SMGAALLSSSE-VKQDLML- 233 (370)
T ss_pred HHHHHHHHHcCCEEEEE-CCccccccCCCCCchHHhhCCCCCcEEEEechhhhh------cCceEEEcCHH-HHHHHHH-
Confidence 99999999999999994 355666554332 3553 3556665 6553 34567776543 2222100
Q ss_pred eeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCC
Q 001989 387 IVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGT 466 (985)
Q Consensus 387 ~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~ 466 (985)
+..+.+++.+ . ++....++.+++ .++..+| +.+.+++.++.+++.+.|...+
T Consensus 234 --------------------~~~~~~~s~~-~---~~~~~~a~~aal--~~l~~~~-~~~~~~l~~l~~~l~~~l~~~~- 285 (370)
T PRK05937 234 --------------------NSPPLRYSTG-L---PPHLLISIQVAY--DFLSQEG-ELARKQLFRLKEYFAQKFSSAA- 285 (370)
T ss_pred --------------------hCCCCeecCC-C---CHHHHHHHHHHH--HHHHhCc-HHHHHHHHHHHHHHHHhcCCCC-
Confidence 0001112212 1 123344444554 4444445 4567788889999998886542
Q ss_pred eEEcCCCCcceEEEecCCHHHHHHHHHHcCceeeee---cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 467 VEVQGLPFFDTVKVKCADAHAIASAAYKIEMNLRVV---DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~GI~~~~~---~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. .. ...+.+......++.+.|.++||.++.. ..+.+|+|++.+||+||||+++++|.+
T Consensus 286 ~----~~-~~~i~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~~~~~t~edid~l~~~L~~ 346 (370)
T PRK05937 286 P----GC-VQPIFLPGISEQELYSKLVETGIRVGVVCFPTGPFLRVNLHAFNTEDEVDILVSVLAT 346 (370)
T ss_pred C----CC-EEEEEeCChhHHHHHHHHHHCCeeEEeeCCCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 1 01 1123332112678899999999988643 146899999999999999999999974
No 125
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=99.81 E-value=2.5e-18 Score=200.96 Aligned_cols=295 Identities=20% Similarity=0.196 Sum_probs=192.4
Q ss_pred HHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH-----HHHCCcEEEEEcCCC
Q 001989 637 LGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT-----AAMCGMKIVSVGTDA 711 (985)
Q Consensus 637 ~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~-----a~~~G~~vv~v~~d~ 711 (985)
+++.+++++|.+...+.+++|++|+..++.++ . +++|+|+++...|+.+... ....|++++.+++++
T Consensus 76 ~~~~la~~~g~~~~~i~~~sgt~al~~~l~~l---~-----~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 147 (416)
T PRK00011 76 AIDRAKELFGAEYANVQPHSGSQANAAVYFAL---L-----KPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDE 147 (416)
T ss_pred HHHHHHHHhCCCceeeecCCchHHHHHHHHHh---c-----CCCCEEEEeccccCCccccccccccccceeeEeecCcCc
Confidence 56689999999876666677887765444333 1 4789999998888765322 123467888888874
Q ss_pred -CCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCC---CCCCccCCcEE
Q 001989 712 -KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL---TSPGYIGADVC 787 (985)
Q Consensus 712 -~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l---~~pg~~g~Di~ 787 (985)
++.+|++++++++++ .++++|+++.++ +|... |+++|+++|+++|+++++|++|..+.... ..+-. ++|++
T Consensus 148 ~~~~~d~~~l~~~i~~--~~~k~v~~~~~~-~~~~~-~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~-~~di~ 222 (416)
T PRK00011 148 ETGLIDYDEVEKLALE--HKPKLIIAGASA-YSRPI-DFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP-HADVV 222 (416)
T ss_pred ccCCcCHHHHHHHHHh--cCCCEEEECCCc-CCCcc-CHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC-CCcEE
Confidence 588999999999972 367888876543 46665 89999999999999999999986443211 12223 68999
Q ss_pred EeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
++|+||+| +||.+|+++++ +++.+.+..... .. ...+ +. ....++ .+..+..+..+
T Consensus 223 ~~S~~K~l------~g~~gg~i~~~~~~~~~~l~~~~~------------~~--~~~~-~~-~~~~aa-~~~a~~~~~~~ 279 (416)
T PRK00011 223 TTTTHKTL------RGPRGGLILTNDEELAKKINSAVF------------PG--IQGG-PL-MHVIAA-KAVAFKEALEP 279 (416)
T ss_pred EecCCcCC------CCCCceEEEeCCHHHHHHHHHHhC------------cc--ccCC-cc-HHHHHH-HHHHHHHHHhh
Confidence 99999987 35777788875 455544321100 00 0011 00 111111 12222233345
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC------C
Q 001989 867 GLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS------W 939 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~------~ 939 (985)
++.+..++..++++++++.|++ ++++.. . +...+.+.+.+++ .+.+..++.+.|.++||.+.... .
T Consensus 280 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~--~~~~~~~~i~~~~----~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~ 352 (416)
T PRK00011 280 EFKEYAQQVVKNAKALAEALAERGFRVVS-G--GTDNHLVLVDLRS----KGLTGKEAEAALEEANITVNKNAVPFDPRS 352 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCeeee-c--CCCCeEEEEeCcc----cCCCHHHHHHHHHHcCcEEccCcCCCCCCC
Confidence 6777888899999999999987 555432 1 1112334455531 23467789999999999876321 1
Q ss_pred C-CCCEEEEeccC----CCCHHHHHHHHccCChhHHHHhhcc
Q 001989 940 P-VPGTLMIEPTE----SESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 940 p-~~~~lris~t~----~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
| .+..+|++... ..|++|+++ +++.|++++...+.
T Consensus 353 ~~~~~~~Ri~~~~~~~~~~t~~di~~--l~~~l~~~~~~~~~ 392 (416)
T PRK00011 353 PFVTSGIRIGTPAITTRGFKEAEMKE--IAELIADVLDNPDD 392 (416)
T ss_pred CCCCCceEecCHHHhhcCcCHHHHHH--HHHHHHHHHhccCc
Confidence 1 24679996533 467999999 78888888765443
No 126
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=99.81 E-value=5.5e-18 Score=196.45 Aligned_cols=322 Identities=15% Similarity=0.126 Sum_probs=204.8
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~ 671 (985)
.+||++++.+..+...+..........++ .....++++.|+++++.+ ..++.+||++|++++++++|.|
T Consensus 47 ~~lGh~~p~v~~a~~~~~~~~~~~~~~~~----------~~~~~~la~~L~~~~~~~-~~~f~~SGseA~e~Alk~ar~~ 115 (397)
T TIGR03246 47 NALGHAHPELVKALIEQADKLWHIGNGYT----------NEPVLRLAKKLVDATFAD-KVFFCNSGAEANEAALKLARRY 115 (397)
T ss_pred ccCCCCCHHHHHHHHHHHHhcccccCccC----------CHHHHHHHHHHHhhCCCC-EEEEeCCcHHHHHHHHHHHHHH
Confidence 46888777666554444321111111111 123457889999998765 4577899999999999999987
Q ss_pred HHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEc
Q 001989 672 HKARGDHHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTY 738 (985)
Q Consensus 672 ~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~ 738 (985)
...++..++++||. ...+||.........+. .+..+|. .|+++++++++ +++++|+++.
T Consensus 116 ~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~---~~~aavi~Ep 187 (397)
T TIGR03246 116 ALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPY-----NDLAAAKALIS---DKTCAVIVEP 187 (397)
T ss_pred HHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCC-----CCHHHHHHHhc---cCeEEEEEec
Confidence 54332223456665 66789987655443331 2344554 38999999997 7899999986
Q ss_pred CC-Cccccc---cCHHHHHHHHHHcCCEEEEEccccccccCCCCCCc--------cCCcEEEeCCcccccccCCCCCCce
Q 001989 739 PS-THGVYE---EGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY--------IGADVCHLNLHKTFCIPHGGGGPGM 806 (985)
Q Consensus 739 pn-~~G~i~---~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~--------~g~Di~~~s~hK~l~~p~g~GGPg~ 806 (985)
++ ..|++. .++++|.++|+++|+++|+|++|. +. .+.|. ..+|++++ .|.+ + ||..+
T Consensus 188 i~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-G~---Gr~G~~~a~~~~gv~pDi~t~--~K~l----g-gG~pi 256 (397)
T TIGR03246 188 IQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQT-GV---GRTGELYAYMHYGVTPDILTS--AKAL----G-GGFPI 256 (397)
T ss_pred ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-cC---CccccchhhhhcCCCCCEEEe--ehhh----h-CCcce
Confidence 54 466553 259999999999999999999872 33 22222 13688754 3766 3 45667
Q ss_pred EEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh
Q 001989 807 GPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRL 886 (985)
Q Consensus 807 G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L 886 (985)
|.+++++++.+.+.... . .+++.|++..++++.+.|..+..+ +..++..++.++++++|
T Consensus 257 gav~~~~~i~~~~~~~~---------------~---~~t~~~~p~~~aaa~a~l~~~~~~---~l~~~~~~~~~~l~~~L 315 (397)
T TIGR03246 257 GAMLTTTEIAAHLKVGT---------------H---GTTYGGNPLACAVAGKVLDLVNTP---ELLAGVKQRHDLFVDGL 315 (397)
T ss_pred eEEEEcHHHHHhccCCC---------------c---CCCCCCCHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHH
Confidence 88888887765553210 0 011223555566667777776543 34556778889999988
Q ss_pred hc-c--CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHc
Q 001989 887 EK-H--YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVML 963 (985)
Q Consensus 887 ~~-g--~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~ 963 (985)
++ . +.+.........+ +.+.+.. ........+++.|.++|+.+.... .+.+|++|+..+|++|||+ +
T Consensus 316 ~~l~~~~~~~~~vrg~G~~--~~i~~~~---~~~~~~~~~~~~l~~~Gv~~~~~g---~~~lR~~p~~~~t~~~i~~--~ 385 (397)
T TIGR03246 316 EKINARYNVFSEIRGKGLL--IGAVLTE---AYQGKAKQFVNAAAEEGVIALIAG---PNVVRFAPSLVISDDDIDE--G 385 (397)
T ss_pred HHHHhcCCCeEeeecCceE--EEEEEcC---chhhHHHHHHHHHHHCCeEEeecC---CCEEEEeCCCCCCHHHHHH--H
Confidence 76 2 2221111100111 2233210 001235689999999999975432 3789999999999999999 7
Q ss_pred cCChhHHHHhh
Q 001989 964 SSPSEKKLHRL 974 (985)
Q Consensus 964 ~~~l~~~~~~~ 974 (985)
++.|++++.++
T Consensus 386 ~~~l~~~l~~~ 396 (397)
T TIGR03246 386 LARFERAIEQV 396 (397)
T ss_pred HHHHHHHHHHh
Confidence 78888887653
No 127
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=99.81 E-value=2.5e-18 Score=196.11 Aligned_cols=299 Identities=15% Similarity=0.077 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-C
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA-K 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~-~ 712 (985)
..++++.+++++|.+.. ++.++|++|++.++.+++ ..++++||++...|..+...+...|++++.+++++ +
T Consensus 20 ~~~~~~~la~~~~~~~~-~~~~sgt~al~~~l~~l~-------~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 91 (352)
T cd00616 20 VREFEKAFAEYLGVKYA-VAVSSGTAALHLALRALG-------IGPGDEVIVPSFTFVATANAILLLGATPVFVDIDPDT 91 (352)
T ss_pred HHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHHcC-------CCCCCEEEeCCcchHHHHHHHHHcCCeEEEEecCCCc
Confidence 56889999999998653 445678877755554431 13678999999888777777788999999999987 6
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCC-CCccCCcEEEeCC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS-PGYIGADVCHLNL 791 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~-pg~~g~Di~~~s~ 791 (985)
+.+|+++|+++++ +++++|++++ .+|... |+++|.++|+++|+++++|++|..+...... .+.+ .|+.++|+
T Consensus 92 ~~~d~~~l~~~i~---~~~~~v~~~~--~~G~~~-~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~-~d~~~~S~ 164 (352)
T cd00616 92 YNIDPELIEAAIT---PRTKAIIPVH--LYGNPA-DMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTF-GDAGAFSF 164 (352)
T ss_pred CCcCHHHHHHhcC---cCCeEEEEEC--CCCCcC-CHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccC-cceeEEcC
Confidence 8899999999996 7899999876 468887 8999999999999999999999644321111 1222 58888886
Q ss_pred c--ccccccCCCCCCceEEEEEc-ccccCcCCCCc-cccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 792 H--KTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHP-VVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 792 h--K~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~-~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
| |+++ ++.+|+++++ +++.+.+.... .+...+ .+.....+.+... ......++. .....++
T Consensus 165 ~~~K~~~------~~~gg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~aa~-----~~~~l~~ 229 (352)
T cd00616 165 HPTKNLT------TGEGGAVVTNDEELAERARLLRNHGRDRD--RFKYEHEILGYNY--RLSEIQAAI-----GLAQLEK 229 (352)
T ss_pred CCCCCCc------ccCceEEEECCHHHHHHHHHHHHcCCCCC--CCccccceeeecc--CcCHHHHHH-----HHHHHHh
Confidence 6 9872 2334666665 34443221100 010000 0000000101100 001111111 1122345
Q ss_pred HHHHHHHHHHHHHHHHHHhhc--cCCeeecCCC-CceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCC---
Q 001989 868 LTEASKIAILNANYMAKRLEK--HYPILFRGVN-GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPV--- 941 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~-~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~--- 941 (985)
+.+..++..++++++++.|.+ ++++....+. ....+.+.+.++. ..+.+..++.+.|.++||.++....|.
T Consensus 230 ~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~L~~~gI~~~~~~~~~~~~ 306 (352)
T cd00616 230 LDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDP---EAGESRDELIEALKEAGIETRVHYPPLHHQ 306 (352)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECC---cCCCCHHHHHHHHHHCCCCeeeecCccccC
Confidence 566667778899999999986 4444322111 1122334444431 014578899999999999765322110
Q ss_pred ---------------------CCEEEEeccCCCCHHHHHHHHccCCh
Q 001989 942 ---------------------PGTLMIEPTESESKSWTGIVMLSSPS 967 (985)
Q Consensus 942 ---------------------~~~lris~t~~~t~eeId~~~~~~~l 967 (985)
.+.+|++++.++|++||++ ++++|
T Consensus 307 ~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~--i~~~l 351 (352)
T cd00616 307 PPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDR--VIEAL 351 (352)
T ss_pred HhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHH--HHHHh
Confidence 2689999999999999999 55554
No 128
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.81 E-value=3.8e-18 Score=196.06 Aligned_cols=332 Identities=14% Similarity=0.124 Sum_probs=215.0
Q ss_pred ccccccccccCCCccccccccc-----cccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc--cc-eecC-cHHHH
Q 001989 590 SMIPLGSCTMKLNATTEMMPVT-----WPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS--FS-LQPN-AGAAG 660 (985)
Q Consensus 590 ~~~~lG~~t~~~~~~~~~~~~~-----~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~--~~-~~~~-sGa~a 660 (985)
..+.||.|.+.++...+..... .+.. .|+| .+|..++.+.+.+++.+.+|.+. .. +..+ ++++|
T Consensus 29 ~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~~-~Y~~------~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~a 101 (393)
T COG0436 29 DVIDLSIGEPDFPTPEHIIEAAIEALEEGGT-HYTP------SAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEA 101 (393)
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHHHhcccC-CCCC------CCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHH
Confidence 3677888877666654444321 1112 3443 47888888888888888888543 23 5544 44556
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC---CCCCCCHHHHHHHHHhcCCCEEEEEEE
Q 001989 661 EYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD---AKGNINIEELRKAAEANRDNLSTLMVT 737 (985)
Q Consensus 661 ~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d---~~g~iD~e~L~~~i~~~~~~t~~Vvv~ 737 (985)
...+++++. ++||+||++++.+..+.....+.|.+++.++++ .++.+|+++|+++++ ++|++|+++
T Consensus 102 l~~~~~a~~--------~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~---~ktk~i~ln 170 (393)
T COG0436 102 LFLAFLALL--------NPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAIT---PKTKAIILN 170 (393)
T ss_pred HHHHHHHhc--------CCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcC---ccceEEEEe
Confidence 654444432 588999999999988888899999999999974 368999999999998 799999999
Q ss_pred cC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccc-cccC--CCCCCc----cCCcEEEeCCcccccccCCCCCCceE
Q 001989 738 YP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMN-AQVG--LTSPGY----IGADVCHLNLHKTFCIPHGGGGPGMG 807 (985)
Q Consensus 738 ~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~-~~~~--l~~pg~----~g~Di~~~s~hK~l~~p~g~GGPg~G 807 (985)
+| |+||.+- ..+++|+++|+++|++++.|.++.. ...+ ...... ...-|.+.|++|+|+++ |+++|
T Consensus 171 ~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mt----GwRvG 246 (393)
T COG0436 171 SPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMT----GWRIG 246 (393)
T ss_pred CCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEeccccccccc----cccee
Confidence 99 5799985 3689999999999999999998731 1111 111111 12236677889998764 89999
Q ss_pred EEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHH
Q 001989 808 PIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG-SKGLTEASKIAILNANYMAKR 885 (985)
Q Consensus 808 ~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg-~eGl~~~~~~~~~~a~~l~~~ 885 (985)
+++++ +++.+.+. .+. ....+|.+..+|.+ +.++|..-. .+.++...+...++++.+.++
T Consensus 247 ~~v~~~~~l~~~~~-~~~-------------~~~~~~~~~~~Q~a----a~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~ 308 (393)
T COG0436 247 WVVGPPEELIAALR-KLK-------------SYLTSCAPTPAQYA----AIAALNGPQSDEVVEEMREEYRERRDLLVEA 308 (393)
T ss_pred EeecChHHHHHHHH-HHH-------------HhcccCCCHHHHHH----HHHHhcCccchHHHHHHHHHHHHHHHHHHHH
Confidence 99998 55554432 000 01112221122321 222222211 123444445678888999999
Q ss_pred hhc--cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC-CCccC-CCCCC---CCCEEEEeccCCCCHHHH
Q 001989 886 LEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY-GFHGP-TMSWP---VPGTLMIEPTESESKSWT 958 (985)
Q Consensus 886 L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~-Gi~~~-~~~~p---~~~~lris~t~~~t~eeI 958 (985)
|.+ ++.+.. .+.+.++ +.++++. ..+..+++++|.++ |+.+. +..|. ..+.+|+|..... +++
T Consensus 309 l~~~~g~~~~~-~p~Ga~Y--~~~~i~~-----~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis~~~~~--~~l 378 (393)
T COG0436 309 LNEIGGLSVVK-PPEGAFY--LFPKIPE-----LLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRLSLATSE--ETL 378 (393)
T ss_pred HHhcCCeeecc-CCCeeEE--EEeecCC-----CCCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEEEEecCH--HHH
Confidence 986 355432 1334333 3355541 25788999998876 78753 33343 3479999986544 777
Q ss_pred HHHHccCChhHHHHh
Q 001989 959 GIVMLSSPSEKKLHR 973 (985)
Q Consensus 959 d~~~~~~~l~~~~~~ 973 (985)
++ .++.+.+.+.+
T Consensus 379 ~~--a~~rl~~~~~~ 391 (393)
T COG0436 379 EE--ALRRLARFLAE 391 (393)
T ss_pred HH--HHHHHHHHHHh
Confidence 77 66667666654
No 129
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=99.81 E-value=5e-18 Score=192.69 Aligned_cols=282 Identities=12% Similarity=0.058 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHHhcCCCC-cceeeccc-hHHHHHHHHHHhhhhcCCCCEEEE-cCCCChhHHHHHHHhhcCCCeEEEEeC
Q 001989 211 ESLLNFQTMIADLTGLPM-SNASLLDE-GTAAAEAMAMCNNIQKGKKKTFII-ASNCHPQTIDICITRADGFDIKVVVSD 287 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~-~~~sl~~~-~ta~~ea~~~a~~~~~~~g~~Vlv-~~~~H~s~~~~~~~~a~~~gi~v~~v~ 287 (985)
+.+.+.++.+.+++|.+. ..+.++.| ||.++|++...+. . +++++++ ..+.+..-. ...++..|+ +..+.
T Consensus 37 ~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~-~--~~~~~l~i~~G~fg~r~---~~~a~~~g~-~~~~~ 109 (349)
T TIGR01364 37 AVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLL-A--EGKVADYIVTGAWSKKA---AKEAKKYGV-VNVVA 109 (349)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcC-C--CCCeEEEEECCHHHHHH---HHHHHHhCC-cEEEe
Confidence 788889999999999743 35667765 9999999887652 2 5677654 444443222 333556676 44433
Q ss_pred ---------chhhhc--cCCCEeEEEEEc-CCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEe
Q 001989 288 ---------LKDIDY--KSGDVCGVLVQY-PGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVG 354 (985)
Q Consensus 288 ---------~~~l~~--l~~~t~~V~v~~-pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~ 354 (985)
..+++. ++++++.|.+++ .|++|+..| ++++.+|++++||+ ..++|... +..+| |++++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~v~~th~ETstGv~~~-----~l~~~~~~l~iVDa-vss~g~~~id~~~~--d~~~~ 181 (349)
T TIGR01364 110 SGKEGNYTKIPDPSTWEISEDAAYVHYCANETIHGVEFR-----ELPDVKNAPLVADM-SSNILSRPIDVSKF--GLIYA 181 (349)
T ss_pred ccccCCCCCCCCHHhcCCCCCCCEEEEcCCCCcccEecc-----eecccCCCeEEEEc-cccccCccCCHHHc--cEEEE
Confidence 123343 456889998876 589999876 66777899999954 34555432 33455 59999
Q ss_pred cCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH
Q 001989 355 SAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY 434 (985)
Q Consensus 355 s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~ 434 (985)
++||+ +|.||+|++++++++++++++.... .+.+....+. ..-.+|+|+ ..++++.+++
T Consensus 182 ssqK~-----lgP~Glg~l~~s~~~~~~~~~~~~~-----------~~~~~~~~~~-~~~~~Tp~~---~~i~al~~al- 240 (349)
T TIGR01364 182 GAQKN-----IGPAGLTVVIVRKDLLGRASRITPS-----------MLNYKIHAEN-DSMYNTPPT---FAIYVSGLVF- 240 (349)
T ss_pred ecccc-----cCCCceEEEEECHHHHhhcccCCCC-----------cchHHHHHhc-CCCCCCCcH---HHHHHHHHHH-
Confidence 99544 2336799999999999887652211 1111000000 011267776 7788888887
Q ss_pred HHHhCcc-hHHHHHHHHHHHHHHHHHHHhcCCCeEEc-CCC--Ccc-eEEEecCC---HHHHHHHHHHcCceeeeec--C
Q 001989 435 AVYHGPE-GLKTIAQRVHGLAGTFALGLKKLGTVEVQ-GLP--FFD-TVKVKCAD---AHAIASAAYKIEMNLRVVD--S 504 (985)
Q Consensus 435 l~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~-~~~--~~~-~~~~~~~~---~~~v~~~L~~~GI~~~~~~--~ 504 (985)
.++..+ |++++.+|..+++++++++|++++|+... .++ ..+ .++|..++ ..++.+.+.++||.+.... .
T Consensus 241 -~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~ 319 (349)
T TIGR01364 241 -KWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNEELEKRFLKEAEERGLVSLKGHRSV 319 (349)
T ss_pred -HHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCChhHhHHHHHHHHHCCCcccCCcccc
Confidence 677778 79999999999999999999999447555 221 232 36677664 3667678888999554432 4
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 505 NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 505 ~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+|+|+..+||+||||+|+++|++
T Consensus 320 g~vRvS~~~~nt~edid~l~~al~~ 344 (349)
T TIGR01364 320 GGMRASIYNAMPLEGVQALVDFMKE 344 (349)
T ss_pred CeeEEECcCCCCHHHHHHHHHHHHH
Confidence 7899999999999999999999984
No 130
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=99.81 E-value=3.5e-18 Score=194.87 Aligned_cols=281 Identities=12% Similarity=0.041 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHhcCCCC-cceee-ccchHHHHHHHHHHhhhhcCCCCEEE-EcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 210 LESLLNFQTMIADLTGLPM-SNASL-LDEGTAAAEAMAMCNNIQKGKKKTFI-IASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 210 l~~i~e~q~~ia~L~g~~~-~~~sl-~~~~ta~~ea~~~a~~~~~~~g~~Vl-v~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
.+.+.+.++.+++++|.+. ..+.+ ..+||+++||+++.+- . ++++++ +..+.+.... ...++.+|.. ..+
T Consensus 47 ~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~-~--~g~~~l~i~~G~fg~r~---~~~a~~~g~~-~~~ 119 (360)
T PRK05355 47 EAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLL-G--GGKKADYVDTGSWSKKA---IKEAKKYGEV-NVA 119 (360)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcC-C--CCCeEEEEECCHHHHHH---HHHHHHhCCc-eEE
Confidence 4778889999999999843 23444 4788999999887653 2 556654 4444553322 2224445644 332
Q ss_pred --Cc-------hhhhc--cCCCEeEEEEEc-CCCCeeec-cHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEE
Q 001989 287 --DL-------KDIDY--KSGDVCGVLVQY-PGTEGEVL-DYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIV 352 (985)
Q Consensus 287 --~~-------~~l~~--l~~~t~~V~v~~-pn~~G~v~-di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~ 352 (985)
+. .++++ +++++++|.+++ .|.+|++. ||++| +|++++||+ ..++|.. .+..+| |++
T Consensus 120 ~~~~~~g~~~~~~~~~~~l~~~~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDa-vss~g~~~idv~~~--d~~ 190 (360)
T PRK05355 120 ASSEDDGFTYIPPLDEWQLSDDAAYVHYTSNETIDGTEFHELPDT------GDVPLVADM-SSDILSRPIDVSKF--GLI 190 (360)
T ss_pred ecccccCCCCCCChhhccCCCCCCEEEEccCCCcceEecCccccc------CCCcEEEEc-CccccCccCCHHHc--cEE
Confidence 21 13323 677889998876 58999998 88877 799999954 3455544 234556 599
Q ss_pred EecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccc-cccCCCccchhHHHHHHH
Q 001989 353 VGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR-DKATSNICTAQALLANMA 431 (985)
Q Consensus 353 v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irr-e~atsni~t~~~l~a~~a 431 (985)
++++||+ +|.||+|++++++++++++.+.+ + .++++.... .+. -.+|+|+ ..++++.+
T Consensus 191 ~~ssqK~-----lgP~Glg~l~~s~~~l~~~~~~~-~----------~~~~~~~~~--~~~~~~~Tp~~---~~i~aL~~ 249 (360)
T PRK05355 191 YAGAQKN-----IGPAGLTIVIVREDLLGRALPSI-P----------SMLDYKTHA--DNDSMYNTPPT---FAIYLAGL 249 (360)
T ss_pred EEecccc-----ccCCceEEEEECHHHHhhcccCC-C----------hHHHHHHHH--hcCCccCCCcH---HHHHHHHH
Confidence 9999554 23367999999999998876531 2 111111000 011 1367777 78888888
Q ss_pred HHHHHHhCcc-hHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC--CCcc-eEEEecCC---HHHHHHHHHHcCceeeee--
Q 001989 432 AMYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKLGTVEVQGL--PFFD-TVKVKCAD---AHAIASAAYKIEMNLRVV-- 502 (985)
Q Consensus 432 a~~l~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~~-~~~~~~~~---~~~v~~~L~~~GI~~~~~-- 502 (985)
++ .++..+ |++++.+|+.+++++++++|+++|.+..+.+ ...+ .++|..++ ..++.+.+.++||.+...
T Consensus 250 aL--~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~ 327 (360)
T PRK05355 250 VF--KWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADEELDKKFLAEAKAAGLVGLKGHR 327 (360)
T ss_pred HH--HHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCChHHHHHHHHHHHHCCCcccCCCC
Confidence 87 666678 8999999999999999999999972333322 2232 36777766 356767888899987433
Q ss_pred cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+.+|+|+..+||+||||+|+++|++
T Consensus 328 ~~g~vRiS~~~~nt~eei~~l~~~l~~ 354 (360)
T PRK05355 328 SVGGMRASIYNAMPLEGVQALVDFMKE 354 (360)
T ss_pred ccCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 247899999999999999999999984
No 131
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.81 E-value=2.2e-18 Score=200.35 Aligned_cols=296 Identities=18% Similarity=0.186 Sum_probs=194.2
Q ss_pred hHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 629 GYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
|......++++.+++++|.+. .+++++|++++++++.++..+ .+++.|+.+...|++....+...|+++..++
T Consensus 87 g~~~~~~~Le~~la~~~g~~~-~l~~~sG~~an~~ai~~l~~~------~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~ 159 (402)
T TIGR01821 87 GTNIPHVELEAELADLHGKES-ALVFTSGYVANDATLATLAKI------IPGCVIFSDELNHASMIEGIRHSGAEKFIFR 159 (402)
T ss_pred CCcHHHHHHHHHHHHHhCCCe-EEEECchHHHHHHHHHHhhCC------CCCCEEEEcchHhHHHHHHHHHcCCeEEEEC
Confidence 334456789999999999754 466788988877666654321 2456666666678776666677888887776
Q ss_pred CCCCCCCCHHHHHHHHHhcCC-CEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccC-CCC-----CC
Q 001989 709 TDAKGNINIEELRKAAEANRD-NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG-LTS-----PG 780 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~-~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~-l~~-----pg 780 (985)
+ .|+++++++++...+ ++++|++++| |.+|.+. |+++|.++|+++|++++||++|..+..+ ... .+
T Consensus 160 ~-----~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~-~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~ 233 (402)
T TIGR01821 160 H-----NDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIA-PIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDG 233 (402)
T ss_pred C-----CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCcc-CHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhcc
Confidence 5 388999998874433 6889999998 4689998 8999999999999999999999644321 110 11
Q ss_pred -ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHH
Q 001989 781 -YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 781 -~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~ 859 (985)
...+|+++.++.|.|+. +| |++++++++.+.+.... ....+ ... +++..++++.+.
T Consensus 234 ~~~~~div~~t~sKa~g~------~G-G~i~~~~~~~~~l~~~~-----------~~~~~-t~~----~~~~~~aaa~aa 290 (402)
T TIGR01821 234 LMHRIDIIEGTLAKAFGV------VG-GYIAASRKLIDAIRSYA-----------PGFIF-TTS----LPPAIAAGATAS 290 (402)
T ss_pred CCCCCeEEEEechhhhcc------CC-ceeecCHHHHHHHHHhC-----------cCcee-cCc----CCHHHHHHHHHH
Confidence 11368888888998853 33 67777776654442110 00000 001 122334444555
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH-CCCccCCC
Q 001989 860 IAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD-YGFHGPTM 937 (985)
Q Consensus 860 l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~-~Gi~~~~~ 937 (985)
|..+..+ .+..++..++++++.++|++ ++++. ++.++. +.+.+.. .....++.++|.+ +||++...
T Consensus 291 L~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~i---~~i~~~~-----~~~a~~~~~~L~~~~Gi~v~~~ 358 (402)
T TIGR01821 291 IRHLKES--QDLRRAHQENVKRLKNLLEALGIPVI--PNPSHI---VPVIIGD-----AALCKKVSDLLLNKHGIYVQPI 358 (402)
T ss_pred HHHhhcC--HHHHHHHHHHHHHHHHHHHHcCCCcC--CCCCCE---EEEEeCC-----HHHHHHHHHHHHhcCCEEEEeE
Confidence 6655433 33344556888999999987 55542 222222 2233320 1135678898875 59998665
Q ss_pred CCC-C---CCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 938 SWP-V---PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 938 ~~p-~---~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.+| + .+.+||+++..+|++|||+ ++++|+++++++
T Consensus 359 ~~p~~~~g~~~lRis~~~~~t~edi~~--~~~~l~~~~~~~ 397 (402)
T TIGR01821 359 NYPTVPRGTERLRITPTPAHTDKMIDD--LVEALLLVWDRL 397 (402)
T ss_pred CCCCCCCCCceEEEEeCCCCCHHHHHH--HHHHHHHHHHHc
Confidence 444 1 2689999999999999999 889999988765
No 132
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=99.81 E-value=1.1e-17 Score=198.90 Aligned_cols=305 Identities=16% Similarity=0.163 Sum_probs=197.5
Q ss_pred CHHHHHHHHHHHhccccCccccc-ccccc-cccCCCcc-ccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHh
Q 001989 569 TEHELLRYIHLLQSKELSLCHSM-IPLGS-CTMKLNAT-TEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTIT 645 (985)
Q Consensus 569 se~e~~~~l~~l~~~~~~~~~~~-~~lG~-~t~~~~~~-~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~ 645 (985)
+-.++++.+...-..+....... .++|+ +++...+. .-+.. ....|-+-... |.++++.++..++-+|+|+++
T Consensus 61 ~~~~~l~~l~~~l~~~sv~~~~P~ry~ghm~~~~~~paila~~~---a~~~N~n~~~~-e~SP~~t~lE~~vi~~la~l~ 136 (608)
T TIGR03811 61 NMKDVLDELSSRLRTESVPWHSAGRYWGHMNSETLMPAILAYNY---AMLWNGNNVAY-ESSPATSQMEEEVGKEFATLM 136 (608)
T ss_pred CHHHHHHHHHHHHhcCCCCCCCccceEEECcCCCCHHHHHHHHH---HHHhCCCCCcc-ccCchHHHHHHHHHHHHHHHh
Confidence 56778888877554442233445 67885 22222211 11111 11222122222 667889999999999999999
Q ss_pred CCCcc-ceecCcHHHHHHHHHHHHHHHHH-----hcCC------------------------------------------
Q 001989 646 GFDSF-SLQPNAGAAGEYAGLMVIRAYHK-----ARGD------------------------------------------ 677 (985)
Q Consensus 646 G~~~~-~~~~~sGa~a~~a~l~air~~~~-----~~g~------------------------------------------ 677 (985)
|++.. ..++++|++|++.++.++|.... ....
T Consensus 137 G~~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g 216 (608)
T TIGR03811 137 GYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSG 216 (608)
T ss_pred CCCCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccccccccccccchhhhhhhccccc
Confidence 99864 35567889899888888886420 0000
Q ss_pred --CCC-CEEEEcCCCCcccHHHHHHCCc---EEEEEcCCCCCCCCHHHHHHHHHhc---CCCEEEEEEEcCC-Ccccccc
Q 001989 678 --HHR-NVCIIPVSAHGTNPATAAMCGM---KIVSVGTDAKGNINIEELRKAAEAN---RDNLSTLMVTYPS-THGVYEE 747 (985)
Q Consensus 678 --~~~-~~IIv~~~~Hg~~~~~a~~~G~---~vv~v~~d~~g~iD~e~L~~~i~~~---~~~t~~Vvv~~pn-~~G~i~~ 747 (985)
..+ .++++|..+|-+..+++...|+ .++.||+|+++++|+++|+++|++. ...+.+|+.+..+ .+|.++
T Consensus 217 ~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiD- 295 (608)
T TIGR03811 217 KDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVD- 295 (608)
T ss_pred cccccceEEEECCCccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccC-
Confidence 001 1688899999999999999998 6999999999999999999999631 1235567777776 499999
Q ss_pred CHHHHHHHH---HHcCC--EEEEEccccccc-cCCCC-----------------------------C-------CccCCc
Q 001989 748 GIDEICKII---HDNGG--QVYMDGANMNAQ-VGLTS-----------------------------P-------GYIGAD 785 (985)
Q Consensus 748 di~eI~~la---~~~ga--lliVD~a~~~~~-~~l~~-----------------------------p-------g~~g~D 785 (985)
||++|+++| +++|+ |+|||||..-.. ..+.+ + +-..+|
T Consensus 296 pl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~AD 375 (608)
T TIGR03811 296 GIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAE 375 (608)
T ss_pred CHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCce
Confidence 899999999 66887 699999873110 00111 0 123689
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEccc-ccCcC---CCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPFL---PSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~-l~~~l---p~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~ 861 (985)
.++.++||++..|+++ |.+++|+. +.+.+ ..++.....+ . . ..-+...+.++..| ..+++.|+.++
T Consensus 376 SItvDpHK~g~~Py~~-----G~ll~Rd~~~~~~~~~~a~Yl~~~~~~-~-p-~~~g~~~legSR~g--a~AlklW~~lr 445 (608)
T TIGR03811 376 SVTIDPHKMGYIPYSA-----GGIVIQDIRMRDVISYFATYVFEKGAD-I-P-ALLGAYILEGSKAG--ATAASVWAAHK 445 (608)
T ss_pred EEEeCcccccccCCCe-----EEEEEeCHHHHHHHhcCcchhcccccc-C-c-ccccccceecCCcc--HHHHHHHHHHH
Confidence 9999999999888765 46777753 22211 1111100000 0 0 00000111222222 33567799999
Q ss_pred Hh--cHHHHHHHHHHHHHHHHHHHHHhhc
Q 001989 862 MM--GSKGLTEASKIAILNANYMAKRLEK 888 (985)
Q Consensus 862 ~l--g~eGl~~~~~~~~~~a~~l~~~L~~ 888 (985)
.+ |.+|+.++.++.+++++++.+.|++
T Consensus 446 ~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~ 474 (608)
T TIGR03811 446 VLPLNVTGYGKLIGASIEGAHRFYDFLNN 474 (608)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98 9999999999999999999999976
No 133
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=99.80 E-value=6.3e-18 Score=196.08 Aligned_cols=319 Identities=14% Similarity=0.136 Sum_probs=201.1
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~ 671 (985)
..||++++.+..+...+...........+. +...++++.++++++.+ ..++.+||++|++++++++|.|
T Consensus 52 ~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~----------~~~~~l~~~l~~~~~~~-~~~~~~SGseA~e~Alk~a~~~ 120 (396)
T PRK04073 52 VNQGHRHPKIIQALKDQADKVTLTSRAFHS----------DQLGPWYEKVAKLTGKD-MVLPMNTGAEAVETAIKAARRW 120 (396)
T ss_pred ccCCCCCHHHHHHHHHHHhhccccccccCC----------HHHHHHHHHHHhcCCCC-eEEEcCChHHHHHHHHHHHHHH
Confidence 457888777766544443222111111111 22447888899988765 3567799999999999998876
Q ss_pred HHh-cCC-CCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEE
Q 001989 672 HKA-RGD-HHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMV 736 (985)
Q Consensus 672 ~~~-~g~-~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv 736 (985)
... +|. .++++||. ...+||.........+- .+..+|.+ |+++++++++ +++++|++
T Consensus 121 ~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~i~---~~~~~vii 192 (396)
T PRK04073 121 AYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYG-----DLEALKAAIT---PNTAAFLV 192 (396)
T ss_pred hhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCCC-----CHHHHHHhcc---cCeEEEEE
Confidence 321 121 13456666 56789987655443221 12344442 8999999997 78999988
Q ss_pred EcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccccCCC-----CCCccCCcEEEeCCcccccccCCCCCCceE
Q 001989 737 TYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLT-----SPGYIGADVCHLNLHKTFCIPHGGGGPGMG 807 (985)
Q Consensus 737 ~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~-----~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G 807 (985)
+.+ |.+|.+.++ +++|.++|+++|+++++|+++. +++... ......+|++++ .|.+ ++||..+|
T Consensus 193 ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g~g~~g~~~~~~~~~~~pdi~~~--sK~l----g~gg~~ig 265 (396)
T PRK04073 193 EPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQT-GLGRTGKLFACDWDNVTPDMYIL--GKAL----GGGVFPIS 265 (396)
T ss_pred cCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-CCCcCcHHHHhhhcCCCCCEEEe--cccc----cCCCCcce
Confidence 887 578988632 8999999999999999999984 222100 011224688765 3776 44556788
Q ss_pred EEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhh
Q 001989 808 PIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLE 887 (985)
Q Consensus 808 ~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~ 887 (985)
++++++++.+.+..... . +++.+++..++++.+.|..+..+++. ++..++++++.+.|+
T Consensus 266 ~~~~~~~i~~~~~~~~~--------------~----~t~~~~~~~~aaa~aaL~~~~~~~l~---~~~~~~~~~l~~~L~ 324 (396)
T PRK04073 266 CVAANRDILGVFTPGSH--------------G----STFGGNPLACAVSIAALEVLEEEKLP---ERSLELGEYFKEQLK 324 (396)
T ss_pred EEEEcHHHHhhhcCCCC--------------C----CCCCCCHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHH
Confidence 99988877665431100 0 01122445555566677666555443 455667888998887
Q ss_pred c-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCC
Q 001989 888 K-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSP 966 (985)
Q Consensus 888 ~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~ 966 (985)
+ +...+...+....+ +.+.+. .+..++.++|.++|+.+.... ++.+||+|+..+|+||||+ +++.
T Consensus 325 ~l~~~~i~~~~~~g~~--~~~~~~-------~~~~~~~~~l~~~Gv~~~~~~---~~~iRi~p~l~~t~e~i~~--~~~~ 390 (396)
T PRK04073 325 EIDNPMIKEVRGRGLF--IGVELN-------EPARPYCEALKEEGLLCKETH---ETVIRFAPPLVITKEELDW--AFEK 390 (396)
T ss_pred hhcCCcccceecceEE--EEEEec-------chHHHHHHHHHHCCeEEecCC---CCEEEEECCcccCHHHHHH--HHHH
Confidence 6 22211110001111 334432 246789999999999975322 3799999999999999999 7777
Q ss_pred hhHHH
Q 001989 967 SEKKL 971 (985)
Q Consensus 967 l~~~~ 971 (985)
|++++
T Consensus 391 l~~~l 395 (396)
T PRK04073 391 IKAVL 395 (396)
T ss_pred HHHHh
Confidence 77654
No 134
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.80 E-value=7.3e-18 Score=196.07 Aligned_cols=312 Identities=13% Similarity=0.147 Sum_probs=199.4
Q ss_pred ccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHH
Q 001989 166 VYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMA 245 (985)
Q Consensus 166 ~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~ 245 (985)
..++|||.+..|..+.+... ++ .+.+ + ++..+....|..+...++++.+|+++|.+. +.++.+|+.+.++++
T Consensus 51 ~sn~ylgl~~~p~v~~a~~~-~~-~~~~--~--~~~~s~~~~g~~~~~~~Le~~la~~~g~~~--~l~~~sG~~an~~ai 122 (402)
T TIGR01821 51 CSNDYLGMGQHPEVLQAMHE-TL-DKYG--A--GAGGTRNISGTNIPHVELEAELADLHGKES--ALVFTSGYVANDATL 122 (402)
T ss_pred EccCcCCCCCCHHHHHHHHH-HH-HHcC--C--CCcchhhhhCCcHHHHHHHHHHHHHhCCCe--EEEECchHHHHHHHH
Confidence 45678888865444433332 22 2211 1 122234455667778899999999999754 567788887777666
Q ss_pred HHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe---Cchhhhc-c---C-CCEeEEEEEcC-CCCeeeccHH
Q 001989 246 MCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS---DLKDIDY-K---S-GDVCGVLVQYP-GTEGEVLDYG 316 (985)
Q Consensus 246 ~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v---~~~~l~~-l---~-~~t~~V~v~~p-n~~G~v~di~ 316 (985)
.+... ..+++.|+.+...|++....++. .|+++..+ |.+++++ + + +++++|++.+| |++|.+.|++
T Consensus 123 ~~l~~-~~~~~~v~~~~~~h~s~~~~~~~----~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~l~ 197 (402)
T TIGR01821 123 ATLAK-IIPGCVIFSDELNHASMIEGIRH----SGAEKFIFRHNDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAPIE 197 (402)
T ss_pred HHhhC-CCCCCEEEEcchHhHHHHHHHHH----cCCeEEEECCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHH
Confidence 44321 12567788888899999988853 46665544 3455655 3 2 36788888887 7899999999
Q ss_pred HHHHHHHhCCcEEEEEecCccccCCCCCC---------cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCc
Q 001989 317 DFIKNAHANGVKVVMATDLLALTILKPPG---------ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGR 386 (985)
Q Consensus 317 ~I~~~a~~~galliV~a~~~~lg~l~~~~---------~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~ 386 (985)
+|.++|+++|++++|| +.+++|++.+.+ ....||++++. |.|+.+ | |++++++++++.+...
T Consensus 198 ~i~~l~~~~~~~livD-ea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~---G----G~i~~~~~~~~~l~~~ 269 (402)
T TIGR01821 198 EICDLADKYGALTYLD-EVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVV---G----GYIAASRKLIDAIRSY 269 (402)
T ss_pred HHHHHHHHcCCEEEEe-CcccccccCCCCCccchhccCCCCCeEEEEechhhhccC---C----ceeecCHHHHHHHHHh
Confidence 9999999999999994 445555432211 12368988887 888642 2 6787887776655100
Q ss_pred eeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCC
Q 001989 387 IVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGT 466 (985)
Q Consensus 387 ~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~ 466 (985)
.+.|.++ ++.| +....+..+++ ..+..+ +++.++..++.+++++.|+++|
T Consensus 270 ----------~~~~~~t------------~~~~---~~~~aaa~aaL--~~~~~~--~~~~~~~~~~~~~l~~~L~~~g- 319 (402)
T TIGR01821 270 ----------APGFIFT------------TSLP---PAIAAGATASI--RHLKES--QDLRRAHQENVKRLKNLLEALG- 319 (402)
T ss_pred ----------CcCceec------------CcCC---HHHHHHHHHHH--HHhhcC--HHHHHHHHHHHHHHHHHHHHcC-
Confidence 0001110 0001 11222233333 333222 5566677789999999999987
Q ss_pred eEEcCCCCcceEEEecCC---HHHHHHHHHH-cCceeeeec-------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 467 VEVQGLPFFDTVKVKCAD---AHAIASAAYK-IEMNLRVVD-------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~---~~~v~~~L~~-~GI~~~~~~-------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++++.+ ..+.+.+.++. +.++.++|.+ +||.++... .+.+|++++.++|++|||+++++|.+
T Consensus 320 ~~~~~~-~~~i~~i~~~~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~ 392 (402)
T TIGR01821 320 IPVIPN-PSHIVPVIIGDAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLL 392 (402)
T ss_pred CCcCCC-CCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 776532 12223333332 6788899875 599886531 25799999999999999999999974
No 135
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=99.79 E-value=5.5e-18 Score=192.98 Aligned_cols=289 Identities=16% Similarity=0.161 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC
Q 001989 630 YQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT 709 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~ 709 (985)
.....+++++.+++++|.+. .+.+++|++++++++.++. ++|++|++++..|+.+...++..|++++.++.
T Consensus 44 ~~~~~~~l~~~la~~~~~~~-~iv~~sg~~a~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~ 114 (349)
T cd06454 44 TSDLHEELEEELAEFHGKEA-ALVFSSGYAANDGVLSTLA--------GKGDLIISDSLNHASIIDGIRLSGAKKRIFKH 114 (349)
T ss_pred CchHHHHHHHHHHHHhCCCC-EEEeccHHHHHHHHHHHhc--------CCCCEEEEehhhhHHHHHHHHHcCCceEEecC
Confidence 33456688899999999875 4666778877655444332 36789999988887777677888999988764
Q ss_pred CCCCCCCHHHHHHHHHhcC--CCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-------CCC
Q 001989 710 DAKGNINIEELRKAAEANR--DNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-------TSP 779 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~--~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-------~~p 779 (985)
+|++++++++++.. +++++|+++++ |.+|.+. |+++|+++|+++|+++++|++|..+..+. ...
T Consensus 115 -----~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~-~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~ 188 (349)
T cd06454 115 -----NDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIA-PLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGG 188 (349)
T ss_pred -----CCHHHHHHHHHHhhccCCCeEEEEeccccCCCCcc-CHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhcc
Confidence 58899999997431 45778888887 4689998 89999999999999999999985432211 011
Q ss_pred CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHH
Q 001989 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 780 g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~ 859 (985)
...+.|+++.|+||+|+. +| |+++.++++.+.+...... + ..++... ...++++.+.
T Consensus 189 ~~~~~~i~~~s~sK~~~~------~g-G~i~~~~~~~~~~~~~~~~-------~---~~~~~~~------~~~~~a~~~~ 245 (349)
T cd06454 189 LTDDVDIIMGTLGKAFGA------VG-GYIAGSKELIDYLRSYARG-------F---IFSTSLP------PAVAAAALAA 245 (349)
T ss_pred ccccCcEEEeechhhhcc------cC-CEEECCHHHHHHHHHhchh-------h---hccCCCC------HHHHHHHHHH
Confidence 345789999999999852 33 6777776654433211000 0 0001111 1122223344
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC
Q 001989 860 IAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS 938 (985)
Q Consensus 860 l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~ 938 (985)
++.+.. +.+..++..++++++.+.|++ ++.+. ++.+... +.+.+. .+.+..++.+.|.++||.+....
T Consensus 246 l~~~~~--~~~~~~~~~~~~~~l~~~l~~~g~~~~--~~~~~~~--~~~~~~-----~~~~~~~~~~~L~~~gI~~~~~~ 314 (349)
T cd06454 246 LEVLQG--GPERRERLQENVRYLRRGLKELGFPVG--GSPSHII--PPLIGD-----DPAKAVAFSDALLERGIYVQAIR 314 (349)
T ss_pred HHHHhc--CHHHHHHHHHHHHHHHHHHHhcCCccc--CCCCCcE--EEEeCC-----ChHHHHHHHHHHHhCCceEEEec
Confidence 444322 344566778889999999976 44432 1111111 112121 12356889999999999875433
Q ss_pred CC----CCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 939 WP----VPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 939 ~p----~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
++ ..+.+|++++.+++++|+++ +++.|++
T Consensus 315 ~~~~~~~~~~iRi~~~~~~~~~~i~~--~~~~l~~ 347 (349)
T cd06454 315 YPTVPRGTARLRISLSAAHTKEDIDR--LLEALKE 347 (349)
T ss_pred CCccCCCCCeEEEEEeCCCCHHHHHH--HHHHHHH
Confidence 22 14789999999999999999 6666654
No 136
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=99.79 E-value=1.4e-17 Score=190.53 Aligned_cols=296 Identities=15% Similarity=0.181 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCC-----------CCCCEEEEcCCCCccc----HHH
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGD-----------HHRNVCIIPVSAHGTN----PAT 696 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~-----------~~~~~IIv~~~~Hg~~----~~~ 696 (985)
+.++++++++++++|.+.+ ++.++++.|+..+++++. ..|. .++++||++...+..+ ...
T Consensus 45 ~~~~~~~~~~a~~~g~~~~-~~~~g~t~al~~al~al~----~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~ 119 (363)
T TIGR01437 45 ELVNKTGEYIANLLGVEDA-VIVSSASAGIAQSVAAVI----TRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETM 119 (363)
T ss_pred HHHHHHHHHHHHhhCCCeE-EEEcCHHHHHHHHHHHHh----cCCCcchhhcccccccccceEEEECccchhcCCchHHH
Confidence 5678899999999998764 566777777766655542 1120 1234888876322222 345
Q ss_pred HHHCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEE-EEcC-CCccccccCHHHHHHHHHHcCCEEEEEcccccccc
Q 001989 697 AAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLM-VTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV 774 (985)
Q Consensus 697 a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vv-v~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~ 774 (985)
..+.|+++++++. ++.+|+++++++|+ ++|++++ +++| |++|.+. |+++|+++||++|+++++|++|..
T Consensus 120 ~~~~g~~~v~v~~--~~~~d~~~le~ai~---~~t~ai~~v~~~~~~~g~~~-~~~~i~~~a~~~gi~vivD~a~~~--- 190 (363)
T TIGR01437 120 VRLGGGKVVEAGY--ANECSAEQLEAAIT---EKTAAILYIKSHHCVQKSML-SVEDAAQVAQEHNLPLIVDAAAEE--- 190 (363)
T ss_pred HHhcCCeEEEEcC--CCCCCHHHHHHhcC---hhceEEEEEecCCCCcCCcC-CHHHHHHHHHHcCCeEEEECCCCC---
Confidence 6788999999986 35699999999998 8888766 4554 6788887 899999999999999999999841
Q ss_pred CCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHH
Q 001989 775 GLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 775 ~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
.+.....+|+|++++|+||+| +||.+|+++.++++.+.+.....+. . +..+.++ .+ ..++.
T Consensus 191 ~~~~~~~~g~D~~~~S~~K~l------~gp~~G~l~~~~~~i~~~~~~~~~~-~----~~~~~~~-------~~-~~gl~ 251 (363)
T TIGR01437 191 DLQKYYRLGADLVIYSGAKAI------EGPTSGLVLGKKKYIEWVKLQSKGI-G----RAMKVGK-------EN-ILGLT 251 (363)
T ss_pred chHHHHHcCCCEEEEeCCccc------CCCceEEEEEcHHHHHHHHhccCCC-c----ceeccCH-------HH-HHHHH
Confidence 112234568999999999988 4677889888866554432111110 0 0000000 01 11222
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCC-CCceeeEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001989 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGV-NGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 855 ~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~-~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~G 931 (985)
++..++...+.+-+ +...+++++++++|.+ ++.+....+ .+..+..+.+.+.. ...+.+..++.++|.++|
T Consensus 252 aAl~~~~~~~~~~~----~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~--~~~g~~~~~l~~~L~~~~ 325 (363)
T TIGR01437 252 AALEQYLSTGKESG----AEMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDE--SELGMTAADVVQALRQGE 325 (363)
T ss_pred HHHHHHHccCcccH----HHHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEec--cCCCCCHHHHHHHHhcCC
Confidence 23333333333322 2333456789999986 344332111 11111123333321 012678999999999877
Q ss_pred --CccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 932 --FHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 932 --i~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
|.+.. .+...+.+++++.. .+.+|+|+ +++.|+++
T Consensus 326 ~~I~~r~-~~~~~~~~~l~~~~-~~~~e~~~--~~~~l~~~ 362 (363)
T TIGR01437 326 PAIYTRG-YKANEGIIEIDPRS-VTGGQLDI--IVERIREI 362 (363)
T ss_pred CCEEEee-eeecCCeEEEEeec-CCHHHHHH--HHHHHHHh
Confidence 44432 22235789999885 66999999 77777664
No 137
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=99.79 E-value=1.1e-17 Score=193.19 Aligned_cols=310 Identities=14% Similarity=0.146 Sum_probs=201.2
Q ss_pred CCccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHH
Q 001989 164 NKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEA 243 (985)
Q Consensus 164 n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea 243 (985)
|...++|||....|+..-+++. ++.. |.+.+ ..++..-|+...+.++|+.+|+++|.+. +.++.+|+++..+
T Consensus 2 ~f~s~dyLgl~~~~~~~~~~~~-a~~~---~g~~~--~~sr~~yg~~~~~~~LE~~lA~~~g~e~--al~~~sG~~a~~~ 73 (392)
T PLN03227 2 NFATHDFLSTSSSPTLRQTALE-SLSH---YGCGS--CGPRGFYGTIDAHLELEQCMAEFLGTES--AILYSDGASTTSS 73 (392)
T ss_pred CCcCcCccCCCCCHHHHHHHHH-HHHH---hCCCC--cccccccCChHHHHHHHHHHHHHhCCCc--EEEecCcHHHHHH
Confidence 4456789999987766655553 4332 33332 2445456777789999999999999874 5667777666666
Q ss_pred HHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe---Cchhhhc----cC-----------CCEeEEEEEc
Q 001989 244 MAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS---DLKDIDY----KS-----------GDVCGVLVQY 305 (985)
Q Consensus 244 ~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v---~~~~l~~----l~-----------~~t~~V~v~~ 305 (985)
+++++ . ++||+|++++..|++++..++ +. +.+++++ |.+++++ +. ++++.|++..
T Consensus 74 ~i~~l-~--~~GD~Vl~~~~~h~s~~~~~~-l~---~~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~ 146 (392)
T PLN03227 74 TVAAF-A--KRGDLLVVDRGVNEALLVGVS-LS---RANVRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEG 146 (392)
T ss_pred HHHHh-C--CCCCEEEEeccccHHHHHHHH-Hc---CCeEEEeCCCCHHHHHHHHHHhhhhccccccccCCCcEEEEEcC
Confidence 66654 2 389999999999999998873 22 3455544 3344332 21 3577788877
Q ss_pred C-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCC-----------CcccceEEEecC-ccccccCCCCCCcEEE
Q 001989 306 P-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPP-----------GELGADIVVGSA-QRFGVPMGYGGPHAAF 372 (985)
Q Consensus 306 p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~-----------~~~GaDi~v~s~-k~lg~P~~~GGP~~G~ 372 (985)
+ |+.|.+.|+++|.++||++|+++++| +.+++|.+... ...|+||++++. |.++ |-.|+
T Consensus 147 v~~~~G~i~~l~~i~~l~~~~g~~livD-e~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g-------~~gg~ 218 (392)
T PLN03227 147 LYKNTGTLAPLKELVALKEEFHYRLILD-ESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFG-------SVGGM 218 (392)
T ss_pred CcCCCCcccCHHHHHHHHHHcCCEEEEE-CcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhh-------ccCcE
Confidence 6 78999999999999999999999994 55666554321 134789999996 6543 33467
Q ss_pred EEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccch--hHH--HHHHHHHHHHHhCcchHHHHHH
Q 001989 373 LATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTA--QAL--LANMAAMYAVYHGPEGLKTIAQ 448 (985)
Q Consensus 373 l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~--~~l--~a~~aa~~l~~~g~~Gl~~i~~ 448 (985)
+.+++++++.+.. .+ ...+++. ++. ++..+++ ..+. + .+++.+
T Consensus 219 v~~~~~~~~~~~~--~~---------------------------~~~~~~~~~~p~~~~aa~~al--~~~~-~-~~~~~~ 265 (392)
T PLN03227 219 TVGSEEVVDHQRL--SG---------------------------SGYCFSASAPPFLAKADATAT--AGEL-A-GPQLLN 265 (392)
T ss_pred EecCHHHHHHHHH--hC---------------------------cCccccCCCCHHHHHHHHHHH--HHHh-c-CHHHHH
Confidence 7778776644310 00 0001111 121 1111222 1211 1 246778
Q ss_pred HHHHHHHHHHHHHhcCCCeEEc----------CCCCcceEEEecCC------------HHHHHHHHHHcCceeee-----
Q 001989 449 RVHGLAGTFALGLKKLGTVEVQ----------GLPFFDTVKVKCAD------------AHAIASAAYKIEMNLRV----- 501 (985)
Q Consensus 449 ~~~~~a~~l~~~L~~~g~~~~~----------~~~~~~~~~~~~~~------------~~~v~~~L~~~GI~~~~----- 501 (985)
+..++.++++++|++.+ +..+ .....+.+.+.+.+ ..++.+.|.++||.+..
T Consensus 266 ~l~~~~~~l~~~L~~~~-~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~ 344 (392)
T PLN03227 266 RLHDSIANLYSTLTNSS-HPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHV 344 (392)
T ss_pred HHHHHHHHHHHHHHhcC-CccccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEeccccc
Confidence 88999999999998643 3211 11112233344332 24888999999997632
Q ss_pred ------ecCCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001989 502 ------VDSNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 502 ------~~~~~lris~t~~~t~edId~li~aL~~~ 530 (985)
.++..+|++++..+|+||||+++++|.+.
T Consensus 345 ~~~~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~ 379 (392)
T PLN03227 345 KKFLQLVPPPCLRVVANASHTREDIDKLLTVLGEA 379 (392)
T ss_pred CCcCCCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence 23578999999999999999999999853
No 138
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.79 E-value=9.9e-18 Score=195.30 Aligned_cols=296 Identities=16% Similarity=0.150 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC
Q 001989 631 QEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD 710 (985)
Q Consensus 631 ~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d 710 (985)
.....++++.+++++|.+. .+++++|+++++.++.++..+ .+++.|+.....|++....+...|+++..++.
T Consensus 90 ~~~~~~l~~~la~~~g~~~-~~~~~sG~~an~~ai~~l~~~------~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~- 161 (407)
T PRK09064 90 NHYHVELERELADLHGKEA-ALVFTSGYVSNDATLSTLAKL------IPDCVIFSDELNHASMIEGIRRSRCEKHIFRH- 161 (407)
T ss_pred HHHHHHHHHHHHHHhCCCc-EEEECcHHHHHHHHHHHHhCC------CCCCEEEEeCcchHHHHHHHHHcCCcEEEECC-
Confidence 4556789999999999654 466778888776666554321 24454555555566655556677888777775
Q ss_pred CCCCCCHHHHHHHHHhcC-CCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccc-cCCCC-----CC-c
Q 001989 711 AKGNINIEELRKAAEANR-DNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ-VGLTS-----PG-Y 781 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~~-~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~-~~l~~-----pg-~ 781 (985)
.|+++|+++++... +++++|++++++ .+|.+. |+++|.++|+++|++++||++|..+. +.... .+ .
T Consensus 162 ----~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~-~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~ 236 (407)
T PRK09064 162 ----NDVAHLEELLAAADPDRPKLIAFESVYSMDGDIA-PIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLM 236 (407)
T ss_pred ----CCHHHHHHHHHhccCCCCeEEEEeCCCCCCcccc-CHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCC
Confidence 38999999887432 468899999984 689988 89999999999999999999996443 21100 11 1
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~ 861 (985)
..+|+++.+++|.|+. +| |++++++++.+.+.... ......+ +. ++..+.++.+.+.
T Consensus 237 ~~~div~~t~sKa~g~------~G-G~~~~~~~~~~~l~~~~-----------~~~~~t~-~~----~~~~~~aa~~al~ 293 (407)
T PRK09064 237 DRIDIIEGTLAKAFGV------MG-GYIAGSAALVDAVRSYA-----------PGFIFTT-SL----PPAIAAAALASIR 293 (407)
T ss_pred CCCeEEEEecchhhhc------cC-ceEecCHHHHHHHHHhC-----------ccccccC-cC----CHHHHHHHHHHHH
Confidence 2368998899999853 22 78887776654432110 0000000 11 2223334445565
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH-CCCccCCCCC
Q 001989 862 MMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD-YGFHGPTMSW 939 (985)
Q Consensus 862 ~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~-~Gi~~~~~~~ 939 (985)
.+...+ ...++..++++++.++|++ ++++. ++.+++ +.+.+.. .....++.++|.+ +||.+..+.+
T Consensus 294 ~~~~~~--~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~i---v~i~~~~-----~~~~~~l~~~L~~~~gi~v~~~~~ 361 (407)
T PRK09064 294 HLKESN--EERERHQERAAKLKAALDAAGIPVM--PNESHI---VPVMVGD-----PEKCKKASDMLLEEHGIYVQPINY 361 (407)
T ss_pred HHhcCH--HHHHHHHHHHHHHHHHHHHcCCCCC--CCCCCE---EEEEeCC-----HHHHHHHHHHHHHhCCEEEeeECC
Confidence 554432 2345677889999999987 55542 121221 2233320 1246789999875 5999876544
Q ss_pred C-C---CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 940 P-V---PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 940 p-~---~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
| + .+.+||+++.++|++|+|+ +++.|++++.++..
T Consensus 362 p~~~~~~~~lRis~~~~~t~edi~~--l~~~l~~~~~~~~~ 400 (407)
T PRK09064 362 PTVPRGTERLRITPTPFHTDEMIDH--LVEALVEVWARLGL 400 (407)
T ss_pred CCCCCCCceEEEEeCCCCCHHHHHH--HHHHHHHHHHHcCC
Confidence 4 2 2579999999999999999 88999998876543
No 139
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.79 E-value=7.4e-18 Score=196.49 Aligned_cols=292 Identities=17% Similarity=0.173 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
...++++.+++++|.+. .+.+++|++++..++.++.. ..+++.|+++...|++....+...|.+++.++.+
T Consensus 92 ~~~~Le~~la~~~g~~~-~i~~~sG~~a~~~~i~~l~~------~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~~-- 162 (410)
T PRK13392 92 PHVLLERELADLHGKES-ALLFTSGYVSNDAALSTLGK------LLPGCVILSDALNHASMIEGIRRSGAEKQVFRHN-- 162 (410)
T ss_pred HHHHHHHHHHHHhCCCC-EEEECcHHHHHHHHHHHHhc------CCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeCC--
Confidence 45689999999999754 56777888777555543321 1256777777778887766777889998877653
Q ss_pred CCCCHHHHHHHHHhcC-CCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCC------CCC-ccC
Q 001989 713 GNINIEELRKAAEANR-DNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT------SPG-YIG 783 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~-~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~------~pg-~~g 783 (985)
|.+++++.+++.. +++++|++++|+ .+|.+. |+++|.++|+++|+++++|++|..+..+-. .++ ...
T Consensus 163 ---d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~-~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~ 238 (410)
T PRK13392 163 ---DLADLEEQLASVDPDRPKLIAFESVYSMDGDIA-PIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDR 238 (410)
T ss_pred ---CHHHHHHHHHhccCCCCEEEEEeCCCCCCcccc-cHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCC
Confidence 6777887775432 578999999985 699887 899999999999999999999864331110 011 114
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM 863 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l 863 (985)
+|+++.+++|+|+. +| |++++++++.+.+.... ..... +... ++..+.++.+.|..+
T Consensus 239 ~div~~tlsK~~g~------~G-G~~~~~~~~~~~l~~~~-----------~~~~~-s~~~----~~~~~~a~~aaL~~~ 295 (410)
T PRK13392 239 IDMIQGTLAKAFGC------LG-GYIAASADLIDFVRSFA-----------PGFIF-TTAL----PPAVAAGATAAIRHL 295 (410)
T ss_pred CcEEEEEChHhhhc------cc-chhhcCHHHHHHHHHhC-----------cchhc-cCcC----CHHHHHHHHHHHHHH
Confidence 68988899999853 33 67777766654332110 00000 1111 112233334455544
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCCCccCCCCCC-
Q 001989 864 GSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYGFHGPTMSWP- 940 (985)
Q Consensus 864 g~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~Gi~~~~~~~p- 940 (985)
...+ +..++..++++++.+.|++ ++++. + +...+ +.+.+. .+....+++++|. ++||.+....+|
T Consensus 296 ~~~~--~~~~~~~~~~~~l~~~L~~~g~~~~-~-~~~~~---~~i~~~-----~~~~~~~~~~~L~~~~GI~v~~~~~p~ 363 (410)
T PRK13392 296 KTSQ--TERDAHQDRVAALKAKLNANGIPVM-P-SPSHI---VPVMVG-----DPTLCKAISDRLMSEHGIYIQPINYPT 363 (410)
T ss_pred hcCH--HHHHHHHHHHHHHHHHHHHcCCCCC-C-CCCCE---EEEEeC-----CHHHHHHHHHHHHHhCCEEEeeeCCCC
Confidence 3322 3345677888999999987 55542 2 21222 223322 0123568999886 579998765444
Q ss_pred C---CCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 941 V---PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 941 ~---~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+ ...+||+++..+|++|+|+ ++++|+++++++
T Consensus 364 ~~~~~~~lRis~~~~~t~edid~--l~~aL~~~~~~~ 398 (410)
T PRK13392 364 VPRGTERLRITPTPLHDDEDIDA--LVAALVAIWDRL 398 (410)
T ss_pred CCCCCceEEEEECCCCCHHHHHH--HHHHHHHHHHHc
Confidence 1 2689999999999999999 889998887654
No 140
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=99.79 E-value=2.4e-17 Score=191.66 Aligned_cols=321 Identities=17% Similarity=0.144 Sum_probs=202.1
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~ 671 (985)
..+|++++.+..+...+...........+ .+...++++.+++++|.+. .++++||++|++++++++|.|
T Consensus 53 ~~~Gh~~~~i~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~l~~~~~~~~-~~~~~SGs~A~e~al~~a~~~ 121 (401)
T PRK00854 53 VNQGHCHPKILAAMVEQAGRLTLTSRAFR----------NDQLAPLYEELAALTGSHK-VLPMNSGAEAVETAIKAVRKW 121 (401)
T ss_pred ccCCCCCHHHHHHHHHHHhhccccccccC----------CHHHHHHHHHHHhhCCCCE-EEEeCCcHHHHHHHHHHHHHH
Confidence 45788776666554433322211111111 1235678899999998753 567789999999999998876
Q ss_pred HHh-cCCC-CCCEEEE-cCCCCcccHHHHHHC------------CcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEE
Q 001989 672 HKA-RGDH-HRNVCII-PVSAHGTNPATAAMC------------GMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMV 736 (985)
Q Consensus 672 ~~~-~g~~-~~~~IIv-~~~~Hg~~~~~a~~~------------G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv 736 (985)
... +|.. ++++||+ +..+||......... ...+..+|. .|+++|++++. +++++|++
T Consensus 122 ~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~i~---~~~~aii~ 193 (401)
T PRK00854 122 GYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPF-----GDAEALEAAIT---PNTVAFLV 193 (401)
T ss_pred HHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCC-----CCHHHHHHHhC---CCeEEEEE
Confidence 321 1221 2356655 678899765443211 123445554 48999999997 78999999
Q ss_pred EcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCC-----CCCccCCcEEEeCCcccccccCCCCCCceE
Q 001989 737 TYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLT-----SPGYIGADVCHLNLHKTFCIPHGGGGPGMG 807 (985)
Q Consensus 737 ~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~-----~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G 807 (985)
++| |.+|.+.+ .+++|+++|+++|+++++|++|. +++-.. ......+|+++++ |+|+ +|...+|
T Consensus 194 e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~-g~g~~g~~~~~~~~g~~~D~~~~~--K~l~----gg~~~ig 266 (401)
T PRK00854 194 EPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQT-GLGRTGKLLAEEHEGIEADVTLIG--KALS----GGFYPVS 266 (401)
T ss_pred ccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCCCchHhHHhhcCCCCCEEEec--cccc----CCccCeE
Confidence 998 46888862 19999999999999999999984 332111 0011246988874 8884 2335678
Q ss_pred EEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhh
Q 001989 808 PIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLE 887 (985)
Q Consensus 808 ~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~ 887 (985)
++++++++...+..... ... +.+++..++++.+.|..+..++ ..++..++++++.+.|+
T Consensus 267 ~v~~~~~~~~~l~~~~~--------------~~t----~~~~~~~~aa~~a~L~~l~~~~---~~~~~~~~~~~l~~~L~ 325 (401)
T PRK00854 267 AVLSNSEVLGVLKPGQH--------------GST----FGGNPLACAVARAALKVLTEEG---MIENAAEMGAYFLEGLR 325 (401)
T ss_pred EEEEcHHHHhcccCCCC--------------CCC----CCcCHHHHHHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHH
Confidence 88888877665532100 001 1123444455556666554433 34566677888999887
Q ss_pred c-cCCeeec-CCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccC
Q 001989 888 K-HYPILFR-GVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSS 965 (985)
Q Consensus 888 ~-g~~l~~~-~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~ 965 (985)
+ ....... ...+. + +.+.+.. .+.+..++++.|.++||.+.... .+.+|++|+..+|++|||+ +++
T Consensus 326 ~~~~~~~~~~~g~g~-~--~~i~~~~----~~~~~~~~~~~L~~~GV~v~~~~---~~~lR~~p~~~~t~e~i~~--~i~ 393 (401)
T PRK00854 326 SIRSNIVREVRGRGL-M--LAVELEP----EAGGARQYCEALKERGLLAKDTH---DHTIRLAPPLVITREQVDW--ALE 393 (401)
T ss_pred hhccCceEEEeccce-E--EEEEEec----CchhHHHHHHHHHHCCeEEecCC---CCEEEEeCCcccCHHHHHH--HHH
Confidence 6 3322111 11121 1 2233321 12346789999999999985432 3799999999999999999 778
Q ss_pred ChhHHH
Q 001989 966 PSEKKL 971 (985)
Q Consensus 966 ~l~~~~ 971 (985)
.|++++
T Consensus 394 ~l~~~l 399 (401)
T PRK00854 394 QIAKVL 399 (401)
T ss_pred HHHHHh
Confidence 887765
No 141
>PRK07179 hypothetical protein; Provisional
Probab=99.79 E-value=9.6e-18 Score=195.34 Aligned_cols=270 Identities=17% Similarity=0.185 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe---C
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS---D 287 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v---~ 287 (985)
+...++++.+|+++|.+. +.++++|+.+.++++.++. +++++|+++...|+++...++. .|++++.+ |
T Consensus 99 ~~~~~le~~la~~~g~~~--~~~~~sG~~An~~~l~~l~---~~g~~v~~~~~~h~s~~~~~~~----~g~~~~~~~~~d 169 (407)
T PRK07179 99 SPKPQFEKKLAAFTGFES--CLLCQSGWAANVGLLQTIA---DPNTPVYIDFFAHMSLWEGVRA----AGAQAHPFRHND 169 (407)
T ss_pred hHHHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHhC---CCCCEEEEECCcCHHHHHHHHH----CCCeEEEecCCC
Confidence 455677789999999875 5678899887777665542 3789999999999999877643 46665554 5
Q ss_pred chhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCC-----cc----cceEEEec
Q 001989 288 LKDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPG-----EL----GADIVVGS 355 (985)
Q Consensus 288 ~~~l~~-l~~-~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~-----~~----GaDi~v~s 355 (985)
++++++ +++ ++++|++.++ |++|.+.|+++|.++|+++|+++++| +.+++|.....+ .+ ++|++++|
T Consensus 170 ~~~l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~~~livD-ea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S 248 (407)
T PRK07179 170 VDHLRRQIERHGPGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVD-ESHSLGTHGPQGAGLVAELGLTSRVHFITAS 248 (407)
T ss_pred HHHHHHHHHhcCCeEEEECCCCCCCCccccHHHHHHHHHHcCCEEEEE-CcccccCcCCCCCchHHhcCCCCCCCEEEee
Confidence 567777 654 4777888777 78999999999999999999999994 344554332111 22 46999999
Q ss_pred C-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH
Q 001989 356 A-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY 434 (985)
Q Consensus 356 ~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~ 434 (985)
. |.+++ ..|++++++++.+.++.. ..+ + ...+|.+ ++...++.+++
T Consensus 249 ~sK~~g~-------~~G~l~~~~~~~~~~~~~---------~~~-~------------~~~~t~~---~~~~aa~~aal- 295 (407)
T PRK07179 249 LAKAFAG-------RAGIITCPRELAEYVPFV---------SYP-A------------IFSSTLL---PHEIAGLEATL- 295 (407)
T ss_pred chHhhhc-------cCeEEEeCHHHHHHHHHh---------CcC-e------------eeCCCCC---HHHHHHHHHHH-
Confidence 7 87752 257899988776654200 000 0 0012222 12333333333
Q ss_pred HHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeee-------cC
Q 001989 435 AVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVV-------DS 504 (985)
Q Consensus 435 l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~-------~~ 504 (985)
..+.. .+++.++..++.+++++.|+++| +++.+.. ..+.+..+. +..+.+.|.++||.++.. ..
T Consensus 296 -~~~~~--~~~~~~~l~~~~~~l~~~L~~~g-~~v~~~~--~i~~l~~~~~~~~~~~~~~L~~~GI~~~~~~~p~~~~~~ 369 (407)
T PRK07179 296 -EVIES--ADDRRARLHANARFLREGLSELG-YNIRSES--QIIALETGSERNTEVLRDALEERNVFGAVFCAPATPKNR 369 (407)
T ss_pred -HHHhc--CHHHHHHHHHHHHHHHHHHHHcC-CCCCCCC--CEEEEEeCCHHHHHHHHHHHHHCCceEeeecCCCCCCCC
Confidence 33322 25677889999999999999987 7766322 233444432 577888999999974322 13
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 505 NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 505 ~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+|++++..+|++|||+++++|.+
T Consensus 370 ~~lRis~~~~~t~edi~~~~~~l~~ 394 (407)
T PRK07179 370 NLIRLSLNADLTASDLDRVLEVCRE 394 (407)
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999999974
No 142
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.79 E-value=1.2e-17 Score=194.41 Aligned_cols=294 Identities=16% Similarity=0.170 Sum_probs=193.1
Q ss_pred HHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC
Q 001989 631 QEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD 710 (985)
Q Consensus 631 ~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d 710 (985)
.....++++.+++++|.+. .++++||++++++++.++.. . .+++.|++...+|++........|.+++.++.
T Consensus 89 ~~~~~~le~~la~~~g~~~-~~~~~SG~~An~~ai~~l~~-----~-~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~- 160 (406)
T PRK13393 89 NHYHVLLEAELADLHGKEA-ALLFTSGYVSNWAALSTLGS-----R-LPGCVILSDELNHASMIEGIRHSRAEKRIFRH- 160 (406)
T ss_pred hHHHHHHHHHHHHHhCCCc-EEEeCCcHHHHHHHHHHhhc-----C-CCCCEEEEccchhHHHHHHHHHcCCeEEEeCC-
Confidence 3456789999999999754 46677888877666654321 1 24567777788898877777778888888876
Q ss_pred CCCCCCHHHHHHHHHhcC-CCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccc-cCCCC-----CC-c
Q 001989 711 AKGNINIEELRKAAEANR-DNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ-VGLTS-----PG-Y 781 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~~-~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~-~~l~~-----pg-~ 781 (985)
.|++++++.++... +++++|+++++ |.+|.+. |+++|.++|+++|+++++|++|..+. +..+. ++ .
T Consensus 161 ----~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~-~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~ 235 (406)
T PRK13393 161 ----NDPADLERKLSDLDPHRPKLVAFESVYSMDGDIA-PIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLA 235 (406)
T ss_pred ----CCHHHHHHHHHhccCCCCEEEEEcCCCCCCCchh-CHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCC
Confidence 38899998886432 36788889887 4689998 89999999999999999999996444 21110 11 1
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~ 861 (985)
...|+++.++.|.|+. +| |++++++++.+.+.... +....++ + +++..++++.+.+.
T Consensus 236 ~~~~i~~~tlsKa~g~------~G-G~~~~~~~~~~~l~~~~-----------~~~~~t~-~----~~p~~~aa~~aaL~ 292 (406)
T PRK13393 236 DRLTIIEGTLAKAFGV------MG-GYITGSAALCDFIRSFA-----------SGFIFTT-S----LPPAVAAGALASVR 292 (406)
T ss_pred CCCeEEEEeCchhhcc------cC-ceeeCCHHHHHHHHHhC-----------cCceecC-c----cCHHHHHHHHHHHH
Confidence 1258888888898853 23 67777766554432110 0000000 0 12233344455566
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH-CCCccCCCCC
Q 001989 862 MMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD-YGFHGPTMSW 939 (985)
Q Consensus 862 ~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~-~Gi~~~~~~~ 939 (985)
.+...+. ..++..+++++++++|++ ++++. .+ .++. +.+.+. ......++.++|.+ +||++....+
T Consensus 293 ~~~~~~~--~~~~~~~~~~~l~~~L~~~g~~~~-~~-~~~i---~~v~~~-----~~~~~~~l~~~L~~~~Gi~v~~~~~ 360 (406)
T PRK13393 293 HLKASSA--ERERHQDRVARLRARLDKAGIPHL-PN-PSHI---VPVMVG-----DPVLCKQISDELLDRYGIYVQPINY 360 (406)
T ss_pred HHhhCHH--HHHHHHHHHHHHHHHHHHcCCCcC-CC-CCCe---EEEEeC-----CHHHHHHHHHHHHHhCCEEEEeECC
Confidence 5543332 224557788999999986 55442 22 1222 222222 01235789999987 5999876544
Q ss_pred C-C---CCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 940 P-V---PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 940 p-~---~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
| + .+.+||+++.++|++|||+ +++.|++++..+
T Consensus 361 p~~p~g~~~iRis~~~~~t~edid~--l~~~l~~~~~~~ 397 (406)
T PRK13393 361 PTVPRGTERLRITPSPLHTDADIEH--LVQALSEIWARL 397 (406)
T ss_pred CCCCCCCceEEEEECCCCCHHHHHH--HHHHHHHHHHhc
Confidence 4 1 2679999999999999999 788888887654
No 143
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=99.79 E-value=2.1e-17 Score=191.97 Aligned_cols=282 Identities=17% Similarity=0.174 Sum_probs=189.4
Q ss_pred HHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc---------
Q 001989 635 NNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM--------- 702 (985)
Q Consensus 635 ~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~--------- 702 (985)
.++++++++++|.+ ...++.+||++|+++++.+++.. ++++||+ ...+||.........|.
T Consensus 88 ~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~~-------g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 160 (398)
T PRK03244 88 IALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLT-------GRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEP 160 (398)
T ss_pred HHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHHH-------CCCeEEEECCCcCCccHHHHhccCCcccccCCCC
Confidence 37888999998854 24567789999998887766642 2345555 45788877655443332
Q ss_pred ---EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccccC
Q 001989 703 ---KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVG 775 (985)
Q Consensus 703 ---~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~ 775 (985)
++..+|. .|++++++++. +++++|+++.+ |.+|.+.++ +++|.++|+++|+++|+|+++. ++
T Consensus 161 ~~~~~~~~~~-----~d~~~l~~~~~---~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~-- 229 (398)
T PRK03244 161 LPGGVEHVPY-----GDVDALAAAVD---DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQT-GI-- 229 (398)
T ss_pred CCCCceEeCC-----CCHHHHHHhhc---CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CC--
Confidence 2334443 38999999886 78999999876 578988633 8999999999999999999984 22
Q ss_pred CCCCC--------ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcch
Q 001989 776 LTSPG--------YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 776 l~~pg--------~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~ 847 (985)
.+.+ ...+|++++ .|+|+ +|..+|++++++++.+.+..... .+++.
T Consensus 230 -gr~g~~~~~~~~~~~pDi~t~--sK~l~-----~G~~ig~~~~~~~~~~~~~~~~~------------------~~t~~ 283 (398)
T PRK03244 230 -GRTGAWFAHQHDGVTPDVVTL--AKGLG-----GGLPIGACLAFGPAADLLTPGLH------------------GSTFG 283 (398)
T ss_pred -cccchHHhhhhhCCCCCEEEE--chhhh-----CCcccEEEEEcHHHHhhccCCCC------------------cCCCC
Confidence 2222 223788766 48884 34568888888776655432100 01122
Q ss_pred hhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHH
Q 001989 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~ 926 (985)
++++.++++.++|..+..+.+ .++..++.+++++.|++ ++++.........+ +.+.++ ......+.++
T Consensus 284 ~~~~~~aaa~a~l~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~~~~~v~g~g~~--~~i~~~------~~~~~~~~~~ 352 (398)
T PRK03244 284 GNPVACAAALAVLDTIASEGL---LENAERLGEQLRAGIEALGHPLVDHVRGRGLL--LGIVLT------APVAKAVEAA 352 (398)
T ss_pred CCHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHhcCCCceeeEeeccEE--EEEEEe------ccHHHHHHHH
Confidence 355666667777777765443 34666778889999986 33221110001111 334443 1146789999
Q ss_pred HHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 927 LMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 927 L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
|.++|+.+.... .+.||++|+..+|++|||+ ++++|++++.++++
T Consensus 353 l~~~Gv~~~~~~---~~~iR~~p~~~~t~~~i~~--~~~~l~~~l~~~~~ 397 (398)
T PRK03244 353 AREAGFLVNAVA---PDVIRLAPPLIITDAQVDA--FVAALPAILDAAAA 397 (398)
T ss_pred HHHCCeEEeecC---CCEEEEECCCcCCHHHHHH--HHHHHHHHHHhccc
Confidence 999999985432 3789999999999999999 88999999987764
No 144
>PLN02483 serine palmitoyltransferase
Probab=99.79 E-value=4e-17 Score=193.27 Aligned_cols=315 Identities=17% Similarity=0.214 Sum_probs=203.4
Q ss_pred CccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHH
Q 001989 165 KVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAM 244 (985)
Q Consensus 165 ~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~ 244 (985)
.+..||||.+-.+...++.+.+++. + +.+. ...+....|+...+.++++.+|+++|.+. ..++.+|+++..++
T Consensus 105 ~~s~~YLgl~~~~~~~~~~~~~ai~-~--~g~~--~~~sr~~~g~~~~~~ele~~lA~~~g~~~--ai~~~~G~~an~~~ 177 (489)
T PLN02483 105 LGSYNYLGFAAADEYCTPRVIESLK-K--YSAS--TCSSRVDGGTTKLHRELEELVARFVGKPA--AIVFGMGYATNSTI 177 (489)
T ss_pred eecCCccCcCCCCHHHHHHHHHHHH-H--hCCC--CCccccccCCcHHHHHHHHHHHHHhCCCc--EEEECCHHHHHHHH
Confidence 3456799998533334444444533 3 2222 22445556788899999999999999765 55666676655544
Q ss_pred HHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hhhhc-c-------CCCE-----eEEEEEcC--
Q 001989 245 AMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KDIDY-K-------SGDV-----CGVLVQYP-- 306 (985)
Q Consensus 245 ~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~l~~-l-------~~~t-----~~V~v~~p-- 306 (985)
+.++ . ++||+|++++..|+++...++ ..|++++.++. +++++ + .++| +.+++..+
T Consensus 178 i~al-~--~~Gd~Vi~d~~~h~s~~~~~~----~~Ga~v~~~~~~d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~ 250 (489)
T PLN02483 178 IPAL-I--GKGGLIISDSLNHNSIVNGAR----GSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIY 250 (489)
T ss_pred HHHh-C--CCCCEEEEcchhhHHHHHHHH----HcCCeEEEEeCCCHHHHHHHHHhhhhccccccccCCceEEEEECCCC
Confidence 4443 2 389999999999999998864 35788877743 44443 2 1333 55555544
Q ss_pred CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCC----------CcccceEEEecC-ccccccCCCCCCcEEEEEE
Q 001989 307 GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPP----------GELGADIVVGSA-QRFGVPMGYGGPHAAFLAT 375 (985)
Q Consensus 307 n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~----------~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~ 375 (985)
|+.|.+.|+++|.++||++|+++++| +.+++|.+... ...++||+++|. |+|+. .| |++++
T Consensus 251 s~~G~~~~l~~I~~la~~~~~~livD-Ea~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~---~G----G~i~~ 322 (489)
T PLN02483 251 SMEGELCKLPEIVAVCKKYKAYVYLD-EAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGS---CG----GYIAG 322 (489)
T ss_pred CCCCcccCHHHHHHHHHHcCCEEEEE-CcCccCccCCCCCchHHhcCCCcccCcEEEEecchhccc---Cc----eEEEc
Confidence 77999999999999999999999994 45555433211 124679999997 88863 12 79998
Q ss_pred chhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHH-hCcch---HHHHHHHHH
Q 001989 376 SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVY-HGPEG---LKTIAQRVH 451 (985)
Q Consensus 376 ~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~-~g~~G---l~~i~~~~~ 451 (985)
++++++.+.... +++. . ++ .+++....+..+++ .. .+.+| .++..++..
T Consensus 323 ~~~li~~l~~~~----------~~~~------------~-~~--~~~p~~~~~~~aaL--~~l~~~~g~~~~~~~~~~l~ 375 (489)
T PLN02483 323 SKELIQYLKRTC----------PAHL------------Y-AT--SMSPPAVQQVISAI--KVILGEDGTNRGAQKLAQIR 375 (489)
T ss_pred CHHHHHHHHHhC----------cccc------------c-cC--CcCHHHHHHHHHHH--HHHHhCccccchHHHHHHHH
Confidence 888877652100 0000 0 00 01112222222333 22 22222 344567888
Q ss_pred HHHHHHHHHHhcCCCeEEcCCCCcceE--EEecCC-HHHHHHHHHHcCceeeee-------cCCeEEEEeccCCCHHHHH
Q 001989 452 GLAGTFALGLKKLGTVEVQGLPFFDTV--KVKCAD-AHAIASAAYKIEMNLRVV-------DSNTVTASFDETTTLEDVD 521 (985)
Q Consensus 452 ~~a~~l~~~L~~~g~~~~~~~~~~~~~--~~~~~~-~~~v~~~L~~~GI~~~~~-------~~~~lris~t~~~t~edId 521 (985)
++.+++++.|+++| +++........+ .+..+. ..++.++|.++||.+... ..+.+|++++..+|+||||
T Consensus 376 ~~~~~l~~~L~~~G-~~v~~~~~sp~~~l~l~~~~~~~~~~~~Ll~~GI~v~~~~fp~~p~~~~~vRi~isa~~t~edId 454 (489)
T PLN02483 376 ENSNFFRSELQKMG-FEVLGDNDSPVMPIMLYNPAKIPAFSRECLKQNVAVVVVGFPATPLLLARARICISASHSREDLI 454 (489)
T ss_pred HHHHHHHHHHHHCC-CcccCCCCCCEEEEEECCHHHHHHHHHHHHHCCcEEeeeCCCCCCCCCceEEEEeCCCCCHHHHH
Confidence 99999999999997 877632211122 222222 668999999999987532 1267999999999999999
Q ss_pred HHHHHHhC
Q 001989 522 KLFIVFAG 529 (985)
Q Consensus 522 ~li~aL~~ 529 (985)
+++++|.+
T Consensus 455 ~~l~~L~~ 462 (489)
T PLN02483 455 KALEVISE 462 (489)
T ss_pred HHHHHHHH
Confidence 99999974
No 145
>PLN02483 serine palmitoyltransferase
Probab=99.78 E-value=2.2e-17 Score=195.41 Aligned_cols=299 Identities=15% Similarity=0.105 Sum_probs=193.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 629 GYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
|....+.++++.+|+++|.+.+ +.+++|..++.+++.++. +++|+||+++..|.+....++..|++++.++
T Consensus 143 g~~~~~~ele~~lA~~~g~~~a-i~~~~G~~an~~~i~al~--------~~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~ 213 (489)
T PLN02483 143 GTTKLHRELEELVARFVGKPAA-IVFGMGYATNSTIIPALI--------GKGGLIISDSLNHNSIVNGARGSGATIRVFQ 213 (489)
T ss_pred CCcHHHHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHhC--------CCCCEEEEcchhhHHHHHHHHHcCCeEEEEe
Confidence 3345577899999999997654 555667665543333321 4789999999988888777889999999999
Q ss_pred CCCCCCCCHHHHHHHHHhc----CCCE-----EEEEEEcC--CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-
Q 001989 709 TDAKGNINIEELRKAAEAN----RDNL-----STLMVTYP--STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL- 776 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~----~~~t-----~~Vvv~~p--n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l- 776 (985)
.+ |+++|++.+++. .++| +.+++..+ |..|.+. ++++|.++|+++|+++++|++|..+..+.
T Consensus 214 ~~-----d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~-~l~~I~~la~~~~~~livDEa~s~g~~G~~ 287 (489)
T PLN02483 214 HN-----TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELC-KLPEIVAVCKKYKAYVYLDEAHSIGAVGKT 287 (489)
T ss_pred CC-----CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCccc-CHHHHHHHHHHcCCEEEEECcCccCccCCC
Confidence 74 778888777521 1232 55555554 4689888 89999999999999999999986432211
Q ss_pred -------CCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 777 -------TSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 777 -------~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
......+.||++.+++|+|++ . +|++++++++.+.+.....+ ...+... +
T Consensus 288 G~g~~~~~~v~~~~~dI~~~SfSKs~g~------~-GG~i~~~~~li~~l~~~~~~-----------~~~~~~~-----~ 344 (489)
T PLN02483 288 GRGVCELLGVDPADVDIMMGTFTKSFGS------C-GGYIAGSKELIQYLKRTCPA-----------HLYATSM-----S 344 (489)
T ss_pred CCchHHhcCCCcccCcEEEEecchhccc------C-ceEEEcCHHHHHHHHHhCcc-----------ccccCCc-----C
Confidence 000123579999999999853 2 28998887776554321000 0001111 1
Q ss_pred hHHHHHHHHHHHHhc-H---HHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHH
Q 001989 850 ALILPISYTYIAMMG-S---KGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVA 924 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg-~---eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~ 924 (985)
+..++.+.+.|+.+- . +-..+..++..++++++++.|++ ++.+. .....+.. .++-+. .....+++
T Consensus 345 p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~G~~v~-~~~~sp~~--~l~l~~------~~~~~~~~ 415 (489)
T PLN02483 345 PPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKMGFEVL-GDNDSPVM--PIMLYN------PAKIPAFS 415 (489)
T ss_pred HHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHCCCccc-CCCCCCEE--EEEECC------HHHHHHHH
Confidence 112222233344321 1 11234456788899999999987 55442 11112222 111111 12356799
Q ss_pred HHHHHCCCccCCCCCC----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 925 KRLMDYGFHGPTMSWP----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 925 ~~L~~~Gi~~~~~~~p----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+.|.++||.+....+| ..+.+||+++..+|+||||+ +++.|+++...+.-
T Consensus 416 ~~Ll~~GI~v~~~~fp~~p~~~~~vRi~isa~~t~edId~--~l~~L~~~~~~~~~ 469 (489)
T PLN02483 416 RECLKQNVAVVVVGFPATPLLLARARICISASHSREDLIK--ALEVISEVGDLVGI 469 (489)
T ss_pred HHHHHCCcEEeeeCCCCCCCCCceEEEEeCCCCCHHHHHH--HHHHHHHHHHHhCc
Confidence 9999999987654454 13689999999999999999 78888888776543
No 146
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.78 E-value=2.1e-17 Score=187.50 Aligned_cols=294 Identities=16% Similarity=0.141 Sum_probs=191.3
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--c-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--S-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+++++++...+|.. . ..++.++|++++.+++.++. .++++|++++..|+.+...++..|+++
T Consensus 36 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~--------~~g~~vl~~~~~~~~~~~~~~~~~~~~ 107 (350)
T cd00609 36 PGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALL--------NPGDEVLVPDPTYPGYEAAARLAGAEV 107 (350)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHCCCEE
Confidence 566666666666666655531 2 23455666666644443331 357899999999999988899999999
Q ss_pred EEEcCCCCCCCCH--HHHHHHHHhcCCCEEEEEEEcCC-CccccccCHH---HHHHHHHHcCCEEEEEcccccccc-CC-
Q 001989 705 VSVGTDAKGNINI--EELRKAAEANRDNLSTLMVTYPS-THGVYEEGID---EICKIIHDNGGQVYMDGANMNAQV-GL- 776 (985)
Q Consensus 705 v~v~~d~~g~iD~--e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~---eI~~la~~~galliVD~a~~~~~~-~l- 776 (985)
+.++.++++..+. +.++..++ +++++|++++|+ ++|.+. |++ +|.++|+++|+++++|+++..... +.
T Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~---~~~~~v~i~~~~~~tG~~~-~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~ 183 (350)
T cd00609 108 VPVPLDEEGGFLLDLELLEAAKT---PKTKLLYLNNPNNPTGAVL-SEEELEELAELAKKHGILIISDEAYAELVYDGEP 183 (350)
T ss_pred EEEecccccCCccCHHHHHhhcC---ccceEEEEECCCCCCCccc-CHHHHHHHHHHHHhCCeEEEEecchhhceeCCcc
Confidence 9999987776665 66666655 789999999984 689987 555 445899999999999999853221 11
Q ss_pred ----CCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 777 ----TSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 777 ----~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
..++..+.|+++.|+||+|+. +|+++|++++++ .+.+.+.... . ..+.+.+ ..
T Consensus 184 ~~~~~~~~~~~~~~~~~s~~K~~~~----~g~~~G~i~~~~~~~~~~~~~~~-~-----------~~~~~~~------~~ 241 (350)
T cd00609 184 PPALALLDAYERVIVLRSFSKTFGL----PGLRIGYLIAPPEELLERLKKLL-P-----------YTTSGPS------TL 241 (350)
T ss_pred cccccCcCccCcEEEEeecccccCC----cccceEEEecCHHHHHHHHHHHH-H-----------hcccCCC------hH
Confidence 123456789999999999853 467899999987 6665543210 0 0011111 11
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY 930 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~ 930 (985)
...++...+.... +++++..++..++++++.+.|++ +..... .+... ..+.+.++. +.....+.+.|.++
T Consensus 242 ~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~g--~~~~~~~~~-----~~~~~~~~~~l~~~ 312 (350)
T cd00609 242 SQAAAAAALDDGE-EHLEELRERYRRRRDALLEALKELGPLVVV-KPSGG--FFLWLDLPE-----GDDEEFLERLLLEA 312 (350)
T ss_pred HHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCcccc-CCCcc--EEEEEecCC-----CChHHHHHHHHHhC
Confidence 1222233343322 56777777888999999999987 222211 11111 123344431 22456677788888
Q ss_pred CCccCCCC-CC--CCCEEEEeccCCCCHHHHHHHHccCChh
Q 001989 931 GFHGPTMS-WP--VPGTLMIEPTESESKSWTGIVMLSSPSE 968 (985)
Q Consensus 931 Gi~~~~~~-~p--~~~~lris~t~~~t~eeId~~~~~~~l~ 968 (985)
||.+.... +. ...++||++... ++||++ ++++|+
T Consensus 313 gi~i~~~~~~~~~~~~~iRi~~~~~--~~~i~~--~~~al~ 349 (350)
T cd00609 313 GVVVRPGSAFGEGGEGFVRLSFATP--EEELEE--ALERLA 349 (350)
T ss_pred CEEEecccccccCCCCeEEEEeeCC--HHHHHH--HHHHhh
Confidence 99876432 21 357999999887 999999 555554
No 147
>PLN02955 8-amino-7-oxononanoate synthase
Probab=99.78 E-value=1.8e-17 Score=190.81 Aligned_cols=307 Identities=14% Similarity=0.128 Sum_probs=199.2
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHH---H---hcCCCCCCEEEEcCCCCcccHHHHHHC
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYH---K---ARGDHHRNVCIIPVSAHGTNPATAAMC 700 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~---~---~~g~~~~~~IIv~~~~Hg~~~~~a~~~ 700 (985)
..|....++++|+.|++++|.+.+ +.+++|..|+.+++.++.... . ....++++.|+.....|.+....+++.
T Consensus 142 ~~G~~~~h~~LE~~LA~f~g~e~a-ll~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls 220 (476)
T PLN02955 142 ICGYTTYHRLLESSLADLKKKEDC-LVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLA 220 (476)
T ss_pred cccChHHHHHHHHHHHHHHCCCcE-EEECChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhc
Confidence 456667788999999999999876 455678888876665542100 0 000123455666666676665556555
Q ss_pred ----CcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccC
Q 001989 701 ----GMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG 775 (985)
Q Consensus 701 ----G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~ 775 (985)
+++++.++++ |+++|++++++++++.+.|++... +..|.+- |+++|.++|+++|++++||.+|..+..|
T Consensus 221 ~~~~~a~~~~f~HN-----D~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdia-pL~eL~~L~~~~ga~LiVDEAH~~Gv~G 294 (476)
T PLN02955 221 ERQGNVEVFVYRHC-----DMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFA-PMEELSQLRKKYGFLLVIDDAHGTFVCG 294 (476)
T ss_pred cccCCceEEEeCCC-----CHHHHHHHHHhCCCCceEEEEeCCCCCCCCcC-CHHHHHHHHHHcCcEEEEcccccCceec
Confidence 5888888875 999999999866555566655543 5689887 8999999999999999999999644332
Q ss_pred C---CCCCcc----CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 776 L---TSPGYI----GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 776 l---~~pg~~----g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
. +....+ ..||++.++.|.|+. .+|++++++++.+++... + +...+++ +.
T Consensus 295 ~~G~G~~e~~g~~~di~ii~~TLsKA~G~-------~GGfi~gs~~~~~~l~~~--~---------~~~ifSt-al---- 351 (476)
T PLN02955 295 ENGGGVAEEFNCEADVDLCVGTLSKAAGC-------HGGFIACSKKWKQLIQSR--G---------RSFIFST-AI---- 351 (476)
T ss_pred CCCCcHHHHhCCCCCCcEEEEeCccchhc-------cCceeecHHHHHHHHHHh--C---------CCCeecc-cc----
Confidence 2 101112 468899998898742 247888887666554311 0 0001111 11
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~ 928 (985)
.+..++++.+.+..+..+ .+..++..++.+|+++.+ ++.+ . .+. +.+-+. .......+.++|.
T Consensus 352 pp~~aaa~laal~l~~~~--~~~r~~L~~n~~~fr~~~--G~~~--~---sPI---~pI~ig-----~~~~a~~~~~~L~ 414 (476)
T PLN02955 352 PVPMAAAAYAAVVVARKE--KWRRKAIWERVKEFKALS--GVDI--S---SPI---ISLVVG-----NQEKALKASRYLL 414 (476)
T ss_pred cHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhc--CCCC--C---CCE---EEEEeC-----CHHHHHHHHHHHH
Confidence 122233334444544332 234567788888888742 4442 1 122 222222 1234567899999
Q ss_pred HCCCccCCCCCC-CC---CEEEEeccCCCCHHHHHHHHccCChhHHHHhhccCCcccc
Q 001989 929 DYGFHGPTMSWP-VP---GTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMGRQIST 982 (985)
Q Consensus 929 ~~Gi~~~~~~~p-~~---~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~~~~~~ 982 (985)
++||++..+.+| ++ ..+||+++..+|++|||+ ++++|.++......+.-++.
T Consensus 415 ~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~--lv~~L~~~~~~~~~~~~~~~ 470 (476)
T PLN02955 415 KSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKK--LITALSSCLDFDNTATYIPS 470 (476)
T ss_pred HCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHH--HHHHHHHHHhhhcceeeecc
Confidence 999999887777 32 469999999999999999 88999988877666665443
No 148
>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.78 E-value=6.4e-18 Score=177.60 Aligned_cols=335 Identities=16% Similarity=0.231 Sum_probs=223.8
Q ss_pred HHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc
Q 001989 570 EHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS 649 (985)
Q Consensus 570 e~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~ 649 (985)
+.|..+|++.|+.-. .+..|+|++++-.+...+.......+. --+....-++++.+.++||.+.
T Consensus 55 D~eGk~ylDflsays------aVnqGhchpki~~aLqeq~~kLtlssr----------afYnd~~~~f~~~vt~lf~~~k 118 (427)
T KOG1402|consen 55 DPEGKEYLDFLSAYS------AVNQGHCHPKIIKALQEQADKLTLSSR----------AFYNDVLGEFAEYVTKLFGYDK 118 (427)
T ss_pred CCCccchhhhhhhhh------hcccCCCCHHHHHHHHHHHhHhhhhhH----------HHhhhhHHHHHHHHHHhcCcce
Confidence 467889999998765 345799999887664444321101000 0012334578899999999876
Q ss_pred cceecCcHHHHHHHHHHHHHHHHH-hcCCCCC-CEEEE-cCCCCcccHHH---------HHHCC----cEEEEEcCCCCC
Q 001989 650 FSLQPNAGAAGEYAGLMVIRAYHK-ARGDHHR-NVCII-PVSAHGTNPAT---------AAMCG----MKIVSVGTDAKG 713 (985)
Q Consensus 650 ~~~~~~sGa~a~~a~l~air~~~~-~~g~~~~-~~IIv-~~~~Hg~~~~~---------a~~~G----~~vv~v~~d~~g 713 (985)
. +-+|+|++|.+++++.+|.|.. .++..+. .+|+. -.++||....+ .+.+| ..+..||.+
T Consensus 119 v-lpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y~--- 194 (427)
T KOG1402|consen 119 V-LPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYG--- 194 (427)
T ss_pred e-eecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeeccC---
Confidence 3 5578999999999999997753 2332212 23443 56789854222 22222 235667775
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc-------
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI------- 782 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~------- 782 (985)
|.++|+.+++. ++.++++++-- ..-|++.|| ++++.++|++|++++|.|++| .|+.+.|++
T Consensus 195 --d~eale~~l~~--~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQ----TGl~RTGk~la~d~en 266 (427)
T KOG1402|consen 195 --DAEALEVALKS--PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQ----TGLARTGKLLACDYEN 266 (427)
T ss_pred --CHHHHHHHhcC--CCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhh----hcccccCcEEEeehhh
Confidence 89999999983 78888888643 467888643 899999999999999999876 455666654
Q ss_pred -CCcEEEeCCcccccccCCCCC--CceEEEEEccccc-CcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 001989 783 -GADVCHLNLHKTFCIPHGGGG--PGMGPIGVKKHLA-PFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 783 -g~Di~~~s~hK~l~~p~g~GG--Pg~G~i~~~~~l~-~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
.+|++.++ |.|+ || |-.++++ +++++ .+-|+. ..+++.|+++.++.+.|
T Consensus 267 v~PDivilg--KalS-----GG~~Pvsavl~-~~~im~~~~pge-------------------HgsTyggNpLg~~vaiA 319 (427)
T KOG1402|consen 267 VRPDIVILG--KALS-----GGVYPVSAVLA-DDDIMLNIKPGE-------------------HGSTYGGNPLGCAVAIA 319 (427)
T ss_pred cCCCeEEEe--cccc-----CCeeeeEEEEe-cHHHHhccCCCc-------------------cccccCCChHHHHHHHH
Confidence 37998874 8774 44 4555555 54444 333432 12356678888888888
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---C-Cee--ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 859 YIAMMGSKGLTEASKIAILNANYMAKRLEKH---Y-PIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 859 ~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~-~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
.|..+.++.+ .++...+...|+++|.+. + .++ ..+. ..++.+++... +..+.++.+++-+|.++|.
T Consensus 320 alevi~eekL---~era~~lG~~l~~~L~~l~~~~p~~v~~VRGr--Gl~~ai~i~~~---~~~~~~aw~~cl~lk~~g~ 391 (427)
T KOG1402|consen 320 ALEVIVEEKL---VERAAKLGEILRDQLNKLQKKFPHVVKEVRGR--GLLNAIVINPS---KTSGQDAWDVCLALKENGL 391 (427)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHhccccccchhheeecc--ceEEEEEeccc---cccchhHHHHHHccccccc
Confidence 9998877654 456677788888888752 2 111 1221 23333344322 1235678899999999999
Q ss_pred ccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 933 HGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 933 ~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.+.+.+ .+.+|++|+...+++|++. -++++++.+.
T Consensus 392 LAkptH---~~IiRfaPPL~I~e~dl~e--g~e~i~k~i~ 426 (427)
T KOG1402|consen 392 LAKPTH---GNIIRFAPPLVISEEDLRE--GIEAIEKTIA 426 (427)
T ss_pred ccCCCC---CCeEEecCCcccCHHHHHH--HHHHHHHHhc
Confidence 987655 4789999999999999999 7777776653
No 149
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=99.78 E-value=3.2e-17 Score=190.70 Aligned_cols=319 Identities=18% Similarity=0.228 Sum_probs=202.8
Q ss_pred cccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHH
Q 001989 591 MIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air 669 (985)
...+|+|++.+..+...+......+.++.+ . +...++.+.|++++..+ ...++.+||++|++++++.+|
T Consensus 86 ~~~lGh~hp~v~~Av~~ql~~l~~~~~~~~-~---------~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr 155 (442)
T TIGR03372 86 IFNVGHRNPNVIAAVENQLAKQPLHSQELL-D---------PLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAK 155 (442)
T ss_pred hhhcCCCCHHHHHHHHHHHHhCCCcccccC-C---------HHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHH
Confidence 345788877777665555433222222221 1 12346788888887543 235678999999999999999
Q ss_pred HHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCCCCCCHHHHHHHHHh---cCCCEEE
Q 001989 670 AYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAKGNINIEELRKAAEA---NRDNLST 733 (985)
Q Consensus 670 ~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~g~iD~e~L~~~i~~---~~~~t~~ 733 (985)
.|...+ ++.+||. ...+||....+....+- .+..+|. .|.+++++.+++ +.+++++
T Consensus 156 ~~t~~~---gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~-----~d~~~~~~~l~~~~~~~~~vAa 227 (442)
T TIGR03372 156 AYQSPR---GKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAF-----GDIEAMLKALNECKKTGDDVAA 227 (442)
T ss_pred HHHhhc---CCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCC-----CCHHHHHHHHHHHhcCCCcEEE
Confidence 874222 3456665 66799987665433221 1344454 278888888753 3357888
Q ss_pred EEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCcccccccCC
Q 001989 734 LMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLHKTFCIPHG 800 (985)
Q Consensus 734 Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~hK~l~~p~g 800 (985)
|+++.. +.-|++. + +++|.++|+++|+++|+|++|. |+++.|.+ .+|++++ .|.+ +
T Consensus 228 vIvEpv~g~gG~~~-p~~~yl~~l~~lc~~~g~llI~DEV~t----G~GRtG~~~a~e~~gv~PDivt~--gK~l----g 296 (442)
T TIGR03372 228 IILEPIQGEGGVIL-PPEGYLPAVRALCDEFGALLILDEVQT----GMGRTGKMFACEHEGVQPDILCL--AKAL----G 296 (442)
T ss_pred EEEeCccCCCCccc-CCHHHHHHHHHHHHHcCCEEEEeeccc----CCCccccchhhhhcCCCCCeeee--hhhh----c
Confidence 888753 3567765 5 9999999999999999999873 34455543 2698875 3766 3
Q ss_pred CC-CCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 001989 801 GG-GPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNA 879 (985)
Q Consensus 801 ~G-GPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a 879 (985)
+| -|..+ +++++++.+.+.... ....+++.|++..++++.+.|+.+..+++.+ +..+..
T Consensus 297 ~G~~Piga-vv~~~~i~~~~~~~~----------------~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~---~~~~~G 356 (442)
T TIGR03372 297 GGVMPIGA-TIATEAVFSVLFDNP----------------FLHTTTFGGNPLACAAALATINELLEKNLPA---QAAIKG 356 (442)
T ss_pred CCcccceE-EEecHHHHHhhhccC----------------ccccCCCCCCHHHHHHHHHHHHHHHhccHHH---HHHHHH
Confidence 33 26444 556766655442110 0112345667888888889999887766543 556777
Q ss_pred HHHHHHhhcc---CC-ee--ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCC
Q 001989 880 NYMAKRLEKH---YP-IL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESE 953 (985)
Q Consensus 880 ~~l~~~L~~g---~~-l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~ 953 (985)
++|+++|++. ++ .+ +.+. + .+ +-+.+.. ......+.+.|.++|+++.....+ .+.+|++|+..+
T Consensus 357 ~~l~~~L~~l~~~~~~~i~~vRG~-G-l~--~giel~~-----~~~~~~i~~~l~~~Gvl~~~~~~~-~~~lr~~Ppl~~ 426 (442)
T TIGR03372 357 DFLLDGFQQLAAEYPDLIIEARGK-G-LL--MAIEFRD-----NEIGYAFAKELFQQNILVAGTLNN-AKSIRIEPPLTI 426 (442)
T ss_pred HHHHHHHHHHHHhCCCceEEEecc-e-EE--EEEEeCC-----hHHHHHHHHHHHHCCcEEeecCCC-CCEEEEECCccc
Confidence 8888888652 22 21 1121 1 12 2233320 123467899999999998643322 479999999999
Q ss_pred CHHHHHHHHccCChhHH
Q 001989 954 SKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 954 t~eeId~~~~~~~l~~~ 970 (985)
|++|||+ ++++|++.
T Consensus 427 t~~~id~--~~~~l~~~ 441 (442)
T TIGR03372 427 TIEQCAL--VIKAAKDA 441 (442)
T ss_pred CHHHHHH--HHHHHHHh
Confidence 9999999 76777664
No 150
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=99.78 E-value=2.3e-17 Score=187.76 Aligned_cols=264 Identities=15% Similarity=0.125 Sum_probs=187.7
Q ss_pred HhhhHHHHHHHHHHHHHHhcCCC--CcceeeccchHHHHHHHHHHhhhh-----------cCCCCEEEEcCCCChhHHHH
Q 001989 205 IAQGRLESLLNFQTMIADLTGLP--MSNASLLDEGTAAAEAMAMCNNIQ-----------KGKKKTFIIASNCHPQTIDI 271 (985)
Q Consensus 205 ~sqg~l~~i~e~q~~ia~L~g~~--~~~~sl~~~~ta~~ea~~~a~~~~-----------~~~g~~Vlv~~~~H~s~~~~ 271 (985)
.+.+..+...++.+++++++|.+ .+++.++.|||.+...++.+.+.. .+.++.|+++...|+++...
T Consensus 32 ~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~ 111 (345)
T cd06450 32 ESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKA 111 (345)
T ss_pred cCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHH
Confidence 35566777788889999999986 457888999997766555543211 01234789999999998888
Q ss_pred HHHhhcCCCeEEEEeCc--------hhhhc-cCC------CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecC
Q 001989 272 CITRADGFDIKVVVSDL--------KDIDY-KSG------DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDL 335 (985)
Q Consensus 272 ~~~~a~~~gi~v~~v~~--------~~l~~-l~~------~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~ 335 (985)
++. .|.+++.++. ++|++ +++ ++++|++++| |.+|.+.|+++|+++||++|+++++|+ .
T Consensus 112 ~~~----~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~-a 186 (345)
T cd06450 112 AAY----LDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDA-A 186 (345)
T ss_pred HHH----HhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEec-h
Confidence 754 3666666643 45555 555 7888888887 679999999999999999999999953 3
Q ss_pred ccccCCC-CC------CcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccc
Q 001989 336 LALTILK-PP------GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTR 407 (985)
Q Consensus 336 ~~lg~l~-~~------~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tr 407 (985)
++.+.+. .. ...++|+++.++ |++++|+ ++|+++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~-----g~g~~~~~------------------------------- 230 (345)
T cd06450 187 YGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPL-----GCSAVLVR------------------------------- 230 (345)
T ss_pred hhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCc-----chHHHHHH-------------------------------
Confidence 3433321 11 113799999898 6665553 34444322
Q ss_pred cccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC----
Q 001989 408 EQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA---- 483 (985)
Q Consensus 408 e~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~---- 483 (985)
..+..++ +.+++.+|++++.++..++++++.+.|+++++++++.++..+.+.|..+
T Consensus 231 ------------------~~~~~~~--l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~~~~~~~ 290 (345)
T cd06450 231 ------------------ALKLWAT--LRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKPSVK 290 (345)
T ss_pred ------------------HHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEECCcch
Confidence 1111222 3677888999999999999999999999985588875544555556543
Q ss_pred -C--HHHHHHHHHHcCce-eeee---cCCeEEEEeccC-CCHHHHHHHHHHHhC
Q 001989 484 -D--AHAIASAAYKIEMN-LRVV---DSNTVTASFDET-TTLEDVDKLFIVFAG 529 (985)
Q Consensus 484 -~--~~~v~~~L~~~GI~-~~~~---~~~~lris~t~~-~t~edId~li~aL~~ 529 (985)
+ +.++.++|.++|+. +... .++.+|++++.+ +|++|+|+|+++|.+
T Consensus 291 ~~~~~~~i~~~L~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 291 LDELNYDLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred hhHHHHHHHHHHHhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 2 57899999998654 4322 246899999986 599999999999864
No 151
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=99.78 E-value=6.4e-18 Score=192.75 Aligned_cols=300 Identities=8% Similarity=-0.028 Sum_probs=190.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCc---cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCccc-HHHHHHCCcE
Q 001989 629 GYQEMFNNLGEWLCTITGFDS---FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTN-PATAAMCGMK 703 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~---~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~-~~Hg~~-~~~a~~~G~~ 703 (985)
-..++++++++.+++++|.+. +.+..+||+.|+++++..+. .+++++++.. ..+|.. ...++..|..
T Consensus 45 ~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~--------~~g~~~l~i~~G~fg~r~~~~a~~~g~~ 116 (360)
T PRK05355 45 EFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLL--------GGGKKADYVDTGSWSKKAIKEAKKYGEV 116 (360)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcC--------CCCCeEEEEECCHHHHHHHHHHHHhCCc
Confidence 345778899999999999732 34566888888887765432 2445555432 222211 2235677865
Q ss_pred EEEEcCCC-CCCCCHHHHHH-HHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Q 001989 704 IVSVGTDA-KGNINIEELRK-AAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 780 (985)
Q Consensus 704 vv~v~~d~-~g~iD~e~L~~-~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg 780 (985)
+.+..++ .|..+..++++ +++ +++++|.+++- +.+|+..+||++| +|++++||++|+++...+ +..
T Consensus 117 -~~~~~~~~~g~~~~~~~~~~~l~---~~~~~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~~i-dv~ 185 (360)
T PRK05355 117 -NVAASSEDDGFTYIPPLDEWQLS---DDAAYVHYTSNETIDGTEFHELPDT------GDVPLVADMSSDILSRPI-DVS 185 (360)
T ss_pred -eEEecccccCCCCCCChhhccCC---CCCCEEEEccCCCcceEecCccccc------CCCcEEEEcCccccCccC-CHH
Confidence 5666554 56666666665 676 57888888875 5799996457766 899999999997554433 334
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC---CCCCCCCCCCCCCCcchhhhHHHHHHH
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI---PAPEKSQPLGTIAAAPWGSALILPISY 857 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~---~~~~~~~~~~~i~s~~~g~~~~~~~a~ 857 (985)
++ |++++|+||+|+ .||+|++++++++.+.+.+.. +...+. .......+|+++. .+.+..
T Consensus 186 ~~--d~~~~ssqK~lg------P~Glg~l~~s~~~l~~~~~~~-~~~~~~~~~~~~~~~~~Tp~~~--------~i~aL~ 248 (360)
T PRK05355 186 KF--GLIYAGAQKNIG------PAGLTIVIVREDLLGRALPSI-PSMLDYKTHADNDSMYNTPPTF--------AIYLAG 248 (360)
T ss_pred Hc--cEEEEecccccc------CCceEEEEECHHHHhhcccCC-ChHHHHHHHHhcCCccCCCcHH--------HHHHHH
Confidence 44 699999999883 468999999988776654321 110010 0000001222221 122223
Q ss_pred HHHHHhcHH-HHHHHHHHHHHHHHHHHHHhhc-cC-CeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCcc
Q 001989 858 TYIAMMGSK-GLTEASKIAILNANYMAKRLEK-HY-PILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHG 934 (985)
Q Consensus 858 a~l~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~-g~-~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~ 934 (985)
++|+.+..+ |+.++.++..+++++++++|++ ++ .. +..+.......+.+.++. +....++.+.+.++|+++
T Consensus 249 ~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~-~~~~~~rs~~v~sf~~~~-----~~~~~~~~~~~~~~Gi~~ 322 (360)
T PRK05355 249 LVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRN-PVAPEDRSRMNVPFTLAD-----EELDKKFLAEAKAAGLVG 322 (360)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCccc-CCChhhcCCcEEEEEcCC-----hHHHHHHHHHHHHCCCcc
Confidence 456666667 7888999999999999999987 32 22 111111111123444431 223356767888899997
Q ss_pred CCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 935 PTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 935 ~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
..... ..+.+|+|+..++|+||||+ +++.|++++.+
T Consensus 323 ~~~~~-~~g~vRiS~~~~nt~eei~~--l~~~l~~~~~~ 358 (360)
T PRK05355 323 LKGHR-SVGGMRASIYNAMPLEGVQA--LVDFMKEFERR 358 (360)
T ss_pred cCCCC-ccCcEEEECCCCCCHHHHHH--HHHHHHHHHHh
Confidence 33221 24899999999999999999 88888887653
No 152
>PLN02721 threonine aldolase
Probab=99.78 E-value=2e-17 Score=188.74 Aligned_cols=292 Identities=15% Similarity=0.123 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH---HHHHCCcEEEEEcCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA---TAAMCGMKIVSVGTD 710 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~---~a~~~G~~vv~v~~d 710 (985)
..++++.+++++|.+.. ++.++|+++++.++.++. + .++|+|++++..|..... .+...|++++.+|.+
T Consensus 42 ~~~l~~~la~~~~~~~~-~~~~~Gs~a~~~~l~~~~------~-~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 113 (353)
T PLN02721 42 ALRLEEEMAKIFGKEAA-LFVPSGTMGNLISVLVHC------D-VRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNN 113 (353)
T ss_pred HHHHHHHHHHHhCCcee-EEecCccHHHHHHHHHHc------c-CCCCeEEEcCccceehhcccchhhhcCceeEecCCC
Confidence 45788999999998764 455667766644444321 1 267899999887744333 456789999999988
Q ss_pred CCCCCCHHHHHHHHHhcC----CCEEEEEEEcC-C-Cccccc--cCHHHHHHHHHHcCCEEEEEccccccc---cCCCCC
Q 001989 711 AKGNINIEELRKAAEANR----DNLSTLMVTYP-S-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ---VGLTSP 779 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~~----~~t~~Vvv~~p-n-~~G~i~--~di~eI~~la~~~galliVD~a~~~~~---~~l~~p 779 (985)
+++.+|+++++++|++.. +++++|+++++ | ++|.+. .++++|.++|+++|+++++|+++.... .+. .+
T Consensus 114 ~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~-~~ 192 (353)
T PLN02721 114 EDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGV-PV 192 (353)
T ss_pred cCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCC-CH
Confidence 889999999999997321 47889999874 4 577764 138899999999999999999874321 111 22
Q ss_pred C--ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHH
Q 001989 780 G--YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISY 857 (985)
Q Consensus 780 g--~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~ 857 (985)
. ..++|.++.++||+|+ +|.+++++.++++...+.... . ...+... +.+. .+++++
T Consensus 193 ~~~~~~~d~~~~s~sK~l~------~~~G~~~~~~~~~~~~~~~~~-~-----------~~~~~~~--~~~~--~~~~~~ 250 (353)
T PLN02721 193 HRLVKAADSVSVCLSKGLG------APVGSVIVGSKSFIRKAKRLR-K-----------TLGGGMR--QVGV--LAAAAL 250 (353)
T ss_pred HHHhhhCCEEEEecccccC------CceeeEEecCHHHHHhHHHHH-H-----------hcCCCee--hhHH--HHHHHH
Confidence 2 2368999999999984 454445666666554322100 0 0000110 1111 111122
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc--CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccC
Q 001989 858 TYIAMMGSKGLTEASKIAILNANYMAKRLEKH--YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP 935 (985)
Q Consensus 858 a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g--~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~ 935 (985)
..+.. ..+..++..++++++.+.|++. +.+....+ ..+.+.++++. ..+.+..+++++|.++||.+.
T Consensus 251 ~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~L~~~gi~v~ 319 (353)
T PLN02721 251 VALQE-----NVPKLEDDHKKAKLLAEGLNQIKGLRVNVAAV---ETNIVYFDITD---GSRITAEKLCKSLEEHGVLLM 319 (353)
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHHHHhCCCcEEecCCc---cceEEEEEccC---CccccHHHHHHHHHhCCcEEe
Confidence 22221 1222334456778899999763 32212222 12224455431 011467889999999999986
Q ss_pred CCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 936 TMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 936 ~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
... .+++|++++..++++|+++ +++.|++++.
T Consensus 320 ~~~---~~~lR~~~~~~~~~~~i~~--~~~~l~~~~~ 351 (353)
T PLN02721 320 PGN---SSRIRVVTHHQISDSDVQY--TLSCFQQAAL 351 (353)
T ss_pred cCC---CceEEEEecCcCCHHHHHH--HHHHHHHHhh
Confidence 432 4789999998999999999 7788887664
No 153
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=99.77 E-value=5.7e-18 Score=192.05 Aligned_cols=286 Identities=16% Similarity=0.122 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH---HHHHCCcEEEEEcCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA---TAAMCGMKIVSVGTD 710 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~---~a~~~G~~vv~v~~d 710 (985)
..++++.+++++| +...++.++|++++..++. .+. .++++|+++++.|..+.. .+...|++++.++.+
T Consensus 34 ~~~l~~~~a~~~g-~~~~~~~~~gt~a~~~~~~---~l~-----~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 104 (338)
T cd06502 34 TAKLEARAAELFG-KEAALFVPSGTAANQLALA---AHT-----QPGGSVICHETAHIYTDEAGAPEFLSGVKLLPVPGE 104 (338)
T ss_pred HHHHHHHHHHHhC-CCeEEEecCchHHHHHHHH---Hhc-----CCCCeEEEecCcceeeecCCcHHHHcCceEEeecCC
Confidence 5678899999999 5445666677776643333 321 467899999988876432 345689999999985
Q ss_pred CCCCCCHHHHHHHHHhc----CCCEEEEEEEcCCCcccc-c-cCHHHHHHHHHHcCCEEEEEccccccc---cCCC-CCC
Q 001989 711 AKGNINIEELRKAAEAN----RDNLSTLMVTYPSTHGVY-E-EGIDEICKIIHDNGGQVYMDGANMNAQ---VGLT-SPG 780 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~----~~~t~~Vvv~~pn~~G~i-~-~di~eI~~la~~~galliVD~a~~~~~---~~l~-~pg 780 (985)
. +.+|+++|++++++. .+++++|++++||..|.+ . .++++|+++|+++|+++++|+++.... .+.. ...
T Consensus 105 ~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~ 183 (338)
T cd06502 105 N-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTY 183 (338)
T ss_pred C-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHH
Confidence 4 789999999999732 137899999999755643 1 268899999999999999999873211 1110 111
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
..++|+++.++||+|+. |++++++.++++.+.+...... .+ ++... +...+ ++.+
T Consensus 184 ~~~~d~~~~s~sK~~~~------~~g~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~----~~~~~---~a~~ 238 (338)
T cd06502 184 KSGVDSVSFCLSKGGGA------PVGAVVVGNRDFIARARRRRKQ-----------AG-GGMRQ----SGFLA---AAGL 238 (338)
T ss_pred HhcCCEEEEeccccCCC------ccceEEECCHHHHHHHHHHHHH-----------hC-CChhh----HHHHH---HHHH
Confidence 24789999999999954 4445666676665444211000 00 01000 11111 2223
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH---HCCCccCC
Q 001989 861 AMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM---DYGFHGPT 936 (985)
Q Consensus 861 ~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~---~~Gi~~~~ 936 (985)
..+...++.+..++..++++++.+.|++ ++.+ ++ +..+.+.+.++. ......++.+.|. ++|+.+..
T Consensus 239 ~~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~----~~~~~~~v~~~~----~~~~~~~l~~~l~~~~~~gi~~~~ 309 (338)
T cd06502 239 AALENDLWLRRLRHDHEMARRLAEALEELGGLE-SE----VQTNIVLLDPVE----ANAVFVELSKEAIERRGEGVLFYA 309 (338)
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHhcCCCc-cc----ccCCeEEEecCC----ccHHHHHHHHHHHHhhhCCEEEEe
Confidence 3343445666667788889999999986 4432 21 122223444321 0111234444443 57887754
Q ss_pred CCCCCCCEEEEeccCCCCHHHHHHHHccCChh
Q 001989 937 MSWPVPGTLMIEPTESESKSWTGIVMLSSPSE 968 (985)
Q Consensus 937 ~~~p~~~~lris~t~~~t~eeId~~~~~~~l~ 968 (985)
.. .+.+||+++..+|.+|+++ +++.++
T Consensus 310 ~~---~~~lRi~~~~~~~~~~i~~--~~~~l~ 336 (338)
T cd06502 310 WG---EGGVRFVTHWDTTEEDVDE--LLSALK 336 (338)
T ss_pred cC---CCeEEEEeecCCCHHHHHH--HHHHHh
Confidence 32 2789999999999999999 655554
No 154
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.77 E-value=2.9e-17 Score=191.89 Aligned_cols=337 Identities=13% Similarity=0.115 Sum_probs=205.5
Q ss_pred cccccccccCCCccccccccccccccc-cCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHH
Q 001989 591 MIPLGSCTMKLNATTEMMPVTWPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVI 668 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~~~~~~f~~-~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~ai 668 (985)
...||++++.+..+...+......... .++ . +...++.+.|++++... ...++.+||++|++++++.+
T Consensus 53 ~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~-~---------~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~A~kla 122 (423)
T PRK05964 53 VATHGHNHPYIDQAIREQLDRLDHVIFAGFT-H---------EPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMA 122 (423)
T ss_pred hccCCCCCHHHHHHHHHHHhhCCCccccccC-C---------HHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHH
Confidence 346888877776655444322111111 111 1 22346778888887421 23467799999999999999
Q ss_pred HHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCCC--CCCCHHHHHHHHHhcCCCEEE
Q 001989 669 RAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDAK--GNINIEELRKAAEANRDNLST 733 (985)
Q Consensus 669 r~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~~--g~iD~e~L~~~i~~~~~~t~~ 733 (985)
|.|...+|..++.+||. ...+||.........+ ..+..++...+ ...+++++++.++++.+++++
T Consensus 123 r~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~iaa 202 (423)
T PRK05964 123 LQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGEIAA 202 (423)
T ss_pred HHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCCcEEE
Confidence 98865555334567775 6688997655432211 12333444211 112288899999765567888
Q ss_pred EEEEc-C-CCccccc---cCHHHHHHHHHHcCCEEEEEccccccccCCCCCCc--------cCCcEEEeCCcccccccCC
Q 001989 734 LMVTY-P-STHGVYE---EGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY--------IGADVCHLNLHKTFCIPHG 800 (985)
Q Consensus 734 Vvv~~-p-n~~G~i~---~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~--------~g~Di~~~s~hK~l~~p~g 800 (985)
|+++. . ...|+.. ..+++|.++|+++|+++++|++|. ++ .++|. ..+|+++++ |+|+
T Consensus 203 vi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-g~---gr~G~~~a~~~~~v~pDi~~~~--K~l~---- 272 (423)
T PRK05964 203 FIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIAT-GF---GRTGTLFACEQAGVSPDIMCLS--KGLT---- 272 (423)
T ss_pred EEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-CC---CcCcchhHHHhcCCCCCeeeee--hhhh----
Confidence 88864 2 2345543 148999999999999999999873 23 23322 237887664 8884
Q ss_pred CCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 001989 801 GGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNAN 880 (985)
Q Consensus 801 ~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~ 880 (985)
+|+-.+|.+++++++.+.+.... .. . . ....+++.|+++.++++.+.+..+..+++ .++..++.+
T Consensus 273 gG~~p~~av~~~~~i~~~~~~~~-~~--------~--~-~~~~~T~~~np~~~aaa~a~l~~l~~~~~---~~~~~~~g~ 337 (423)
T PRK05964 273 GGYLPLAATLCTAEIFEAFYSDD-RA--------K--A-FMHSPSYTANPLACAAANASLDLFEDEPV---LERVAALSA 337 (423)
T ss_pred cCcccceEEEEcHHHHHhhhcCC-cc--------c--c-cccCCCCCcCHHHHHHHHHHHHHHHhcCH---HHHHHHHHH
Confidence 33234667888887766553110 00 0 0 00112344566777777788887765544 456777788
Q ss_pred HHHHHhhcc--CCee--ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHH
Q 001989 881 YMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKS 956 (985)
Q Consensus 881 ~l~~~L~~g--~~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~e 956 (985)
++++.|++. +..+ ..+. + .+ +.+.+.. ...+.....+.+.|.++|+++... .+.+|++|+..+|++
T Consensus 338 ~l~~~l~~l~~~~~i~~vrg~-G-l~--~~i~l~~--~~~~~~~~~l~~~l~~~Gv~v~~~----~~~lR~~p~l~~t~e 407 (423)
T PRK05964 338 GLAEGLEPFRDLPGVADVRVL-G-AI--GAVELDR--PVLERDGPALRAFALERGVLLRPL----GNTIYLMPPYIITAE 407 (423)
T ss_pred HHHHHHHhhccCCCeEEeecc-c-EE--EEEEecc--CcchhHHHHHHHHHHHCCeEEEec----CCEEEEeCCcccCHH
Confidence 888888752 2221 1111 1 11 2233321 000012567889999999998543 368999999999999
Q ss_pred HHHHHHccCChhHHHHhh
Q 001989 957 WTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 957 eId~~~~~~~l~~~~~~~ 974 (985)
|||+ ++++++++++++
T Consensus 408 dId~--~v~~l~~al~~~ 423 (423)
T PRK05964 408 ELDR--ITDAIVEVADEL 423 (423)
T ss_pred HHHH--HHHHHHHHHhhC
Confidence 9999 789998888653
No 155
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=99.77 E-value=1.9e-17 Score=186.64 Aligned_cols=292 Identities=15% Similarity=0.173 Sum_probs=197.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEE
Q 001989 626 QAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 626 ~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv 705 (985)
...|....+.++|+.||+++|.+.+ +.++||-.|+.+.+.++. .++|.|+.....|.+....++..+.+++
T Consensus 78 ~i~G~~~~h~~LE~~lA~f~g~e~a-l~f~SGy~AN~~~i~~l~--------~~~dli~~D~lnHASiidG~rls~a~~~ 148 (388)
T COG0156 78 LISGTSDLHVELEEELADFLGAEAA-LLFSSGFVANLGLLSALL--------KKGDLIFSDELNHASIIDGIRLSRAEVR 148 (388)
T ss_pred cccCCcHHHHHHHHHHHHHhCCCcE-EEEcccchhHHHHHHHhc--------CCCcEEEEechhhhhHHHHHHhCCCcEE
Confidence 4567888899999999999999875 455778888866666553 3567666677778777777889999999
Q ss_pred EEcCCCCCCCCHHHHHHHHHhcCC---CEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC---CC
Q 001989 706 SVGTDAKGNINIEELRKAAEANRD---NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL---TS 778 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~~~---~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l---~~ 778 (985)
.++++ |+++|++.+.+.+. +.+.|++... +..|.+- |+++|++++++||++++||.||+.+..|- +.
T Consensus 149 ~f~Hn-----D~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiA-pL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~ 222 (388)
T COG0156 149 RFKHN-----DLDHLEALLEEARENGARRKLIVTEGVFSMDGDIA-PLPELVELAEKYGALLYVDEAHAVGVLGPNGRGL 222 (388)
T ss_pred EecCC-----CHHHHHHHHHhhhccCCCceEEEEeccccCCCCcC-CHHHHHHHHHHhCcEEEEEccccccccCCCCccH
Confidence 99984 99999999985211 2344555443 5689987 89999999999999999999997554331 00
Q ss_pred CCcc-----CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 779 PGYI-----GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 779 pg~~-----g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
.... .+||+++++.|.|+. .+|++.++..+.+++..+. +...+++ +. .+..+
T Consensus 223 ~e~~g~~~~~vdi~~gTlsKAlGs-------~Gg~v~g~~~~~d~L~~~a-----------r~~ifSt-al----pP~~a 279 (388)
T COG0156 223 AEHFGLEPEEVDIIVGTLGKALGS-------SGGYIAGSAALIDYLRNRA-----------RPFIFST-AL----PPAVA 279 (388)
T ss_pred HHHhCCCCccceEEEEEchhhhcc-------cCceeeCcHHHHHHHHHhC-----------CceeccC-CC----CHHHH
Confidence 1112 248999999998852 3478888877666543210 0000111 00 12333
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 854 ~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
+++.+.++.+... .+..++..+++.++++.++. ++.+. +...+.. .+++.. ......+...|.++||
T Consensus 280 aa~~~al~~l~~~--~~~r~~L~~~~~~~~~~~~~~~~~~~--~s~s~I~-pv~~gd-------~~~a~~~s~~l~~~Gi 347 (388)
T COG0156 280 AAALAALRILEEG--PERRERLQELAAFFRSLLKALGLVLL--PSESPII-PVILGD-------EERALEASRALLEEGI 347 (388)
T ss_pred HHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHhcCCccC--CCCCCee-eeEeCC-------HHHHHHHHHHHHHCCe
Confidence 4455666666432 44556778888888866655 44431 1111222 233321 1246788999999999
Q ss_pred ccCCCCCC-CC---CEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 933 HGPTMSWP-VP---GTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 933 ~~~~~~~p-~~---~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
++..+.+| ++ ..||+++|..+|++||++ +++.|.+
T Consensus 348 ~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~--l~~~l~~ 386 (388)
T COG0156 348 YVSAIRPPTVPKGTARLRITLTAAHTEEDIDR--LAEALSE 386 (388)
T ss_pred eEeeecCCCCCCCcceEEEEecCCCCHHHHHH--HHHHHHh
Confidence 99887777 33 689999999999999999 5555554
No 156
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=99.77 E-value=1.3e-16 Score=166.93 Aligned_cols=324 Identities=16% Similarity=0.168 Sum_probs=219.4
Q ss_pred ecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCC-CcceeeccchHHHHHHHHHHh
Q 001989 170 FIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLP-MSNASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 170 ~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~~a~ 248 (985)
.+|.| |.-+|..|.++ .+++-. +-..||.. |.+.+..+-+--.|... ...+.+-.+|+.++|+++..+
T Consensus 20 L~gPG--Psnl~~~V~~A-~~~~~l----gh~sPe~~----qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~ 88 (385)
T KOG2862|consen 20 LLGPG--PSNLSGRVQEA-MSRPSL----GHMSPEFV----QIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNL 88 (385)
T ss_pred eecCC--CcCCCHHHHHh-hcCCcc----ccCCHHHH----HHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhh
Confidence 66888 56689999844 555532 23356653 33444444444444332 223556678889999987654
Q ss_pred hhhcCCCCEEEEcC-CCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cC-CCEeEEEEEcC-CCCeeecc-H
Q 001989 249 NIQKGKKKTFIIAS-NCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KS-GDVCGVLVQYP-GTEGEVLD-Y 315 (985)
Q Consensus 249 ~~~~~~g~~Vlv~~-~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~-~~t~~V~v~~p-n~~G~v~d-i 315 (985)
+. +||+|++-. +.+.....-+ ++++|++|..++. +++.+ +. -..++|+|++. +.+|+++| +
T Consensus 89 -le--Pgd~vLv~~~G~wg~ra~D~---~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~ 162 (385)
T KOG2862|consen 89 -LE--PGDNVLVVSTGTWGQRAADC---ARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLL 162 (385)
T ss_pred -cC--CCCeEEEEEechHHHHHHHH---HHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCccccccchHH
Confidence 23 899987544 5654333222 3467888887743 45554 43 45678888876 78999999 7
Q ss_pred HHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeec
Q 001989 316 GDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSID 393 (985)
Q Consensus 316 ~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d 393 (985)
+.+.++||+++++++|++ ..|+|... ..++||+|++-..+ |.|+.| ||++++..+++.+.++-.|--
T Consensus 163 ~~~g~lc~k~~~lllVD~-VaSlggt~F~mDewgVDvaytgSQKaL~aP-----~GLsiisfS~ka~~~~~~rK~----- 231 (385)
T KOG2862|consen 163 AISGELCHKHEALLLVDT-VASLGGTEFEMDEWGVDVAYTGSQKALGAP-----AGLSIISFSDKALEAIRDRKT----- 231 (385)
T ss_pred HHHHHHhhcCCeEEEEec-hhhcCCccceehhhcccEEEecchhhcCCC-----CCcceeecCHHHHHHHhhccC-----
Confidence 888999999999999954 45777653 45899999988777 888777 578899999988887743321
Q ss_pred CCCCcceeeecccccccc------cccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCe
Q 001989 394 SSGKPALRVAMQTREQHI------RRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 394 ~~g~~~~~l~l~tre~~i------rre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~ 467 (985)
+...|+++...+-+.+ |+...|..+ +.++++.+|+ +.+-++|++++.+|+.+++++++..|+++| +
T Consensus 232 --~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv---~lly~Lr~AL--~~I~eeGL~~~~~rH~e~s~~l~~~l~~~G-L 303 (385)
T KOG2862|consen 232 --KPVSFYFDILRLGNFWGCDGEPRAYHHTPPV---QLLYSLRAAL--ALIAEEGLENSWRRHREMSKWLKLSLEALG-L 303 (385)
T ss_pred --CceEEEEeHHhhcchhccCCcccccccCCcH---HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-c
Confidence 1123555532222222 344455555 8899999997 788899999999999999999999999998 8
Q ss_pred EEcC--C-CCcceEE-EecCC---HHHHHHHHHHc-Cceee----eecCCeEEEEeccC-CCHHHHHHHHHHHhC
Q 001989 468 EVQG--L-PFFDTVK-VKCAD---AHAIASAAYKI-EMNLR----VVDSNTVTASFDET-TTLEDVDKLFIVFAG 529 (985)
Q Consensus 468 ~~~~--~-~~~~~~~-~~~~~---~~~v~~~L~~~-GI~~~----~~~~~~lris~t~~-~t~edId~li~aL~~ 529 (985)
++.. + ...++++ +..+- ..+|+..+.++ ++.+. ...+..+||.+.-. -+.|-||..++.|+.
T Consensus 304 q~fv~~e~~rlptvttv~vp~gvDw~dVv~~~~~~~~vei~gglg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~ 378 (385)
T KOG2862|consen 304 QLFVVDEELRLPTVTTVKVPYGVDWKDVVAYAMSHYVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLKL 378 (385)
T ss_pred cceecChhhccCcceeeecCCCCCHHHHHHHHHHhcCEEeccccCCCcccEEEEEEeeccCCcHHHHHHHHHHHH
Confidence 8762 1 3333332 33332 77888888776 66553 33456789988664 477888888888764
No 157
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=99.77 E-value=1.1e-17 Score=190.58 Aligned_cols=279 Identities=14% Similarity=0.150 Sum_probs=184.3
Q ss_pred HHHHHHHHHHhCCCccceecCcHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGA-AGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa-~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++.+++++|++...+..++|+ ++...++. .+. .++++|+++++.|+.+...++..|++++.+|+++++
T Consensus 57 ~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~---~l~-----~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 128 (346)
T TIGR01141 57 AELKQALADYYGVDPEQILLGNGSDEIIELLIR---AFL-----EPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDEDG 128 (346)
T ss_pred HHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHH---Hhc-----CCCCEEEEcCCCHHHHHHHHHHcCCeEEEeccCCCC
Confidence 478899999999876555554454 44433332 221 367899999887665555677899999999998888
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHc--CCEEEEEccccccccCCCCC----CccCCcE
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDN--GGQVYMDGANMNAQVGLTSP----GYIGADV 786 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~--galliVD~a~~~~~~~l~~p----g~~g~Di 786 (985)
.+|+++++++++ +++++|++++| |++|.+. +++++.++|+.+ |+++++|+++. .+..-..+ .....++
T Consensus 129 ~~d~~~l~~~~~---~~~~~v~l~~p~NptG~~~-~~~~~~~l~~~~~~~~~ii~D~~y~-~~~~~~~~~~~~~~~~~~i 203 (346)
T TIGR01141 129 QLDLEDILVAID---DKPKLVFLCSPNNPTGNLL-SRSDIEAVLERTPEDALVVVDEAYG-EFSGEPSTLPLLAEYPNLI 203 (346)
T ss_pred CCCHHHHHHhcC---CCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCCcEEEEECchh-hhcCCccHHHHHhhCCCEE
Confidence 999999999876 78999999998 4799998 899999999887 99999999874 11111011 1122346
Q ss_pred EEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
++.|++|+|+. +|+++|++++++++.+.+.... ...+.+ .....++.+++... +
T Consensus 204 ~~~S~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~--------------~~~~~~------~~~~~~~~~~l~~~--~ 257 (346)
T TIGR01141 204 VLRTLSKAFGL----AGLRIGYAIANAEIIDALNKVR--------------APFNLS------RLAQAAAIAALRDD--D 257 (346)
T ss_pred EEehhhHhhhc----hhhhceeeecCHHHHHHHHhcc--------------CCCCCC------HHHHHHHHHHhCCH--H
Confidence 77888999854 3678999999877665543210 001111 11122222333322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-C-CCCCE
Q 001989 867 GLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-W-PVPGT 944 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~-p~~~~ 944 (985)
.+.+..++..++++++++.|++..++...++.+ .+ +.+.++ + +.+++.++|.++||.+.... + ..++.
T Consensus 258 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g-~~--~~~~~~------~-~~~~~~~~L~~~gI~v~~g~~f~~~~~~ 327 (346)
T TIGR01141 258 FIEKTVEEINAERERLYDGLKKLPGLEVYPSDA-NF--VLIRFP------R-DADALFEALLEKGIIVRDLNSYPGLPNC 327 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEECCCcC-CE--EEEecC------C-CHHHHHHHHHHCCeEEEeCCCcCCCCCe
Confidence 355666677788888999987621222222212 22 345553 2 67899999999999875432 2 12589
Q ss_pred EEEeccCCCCHHHHHHHHccCCh
Q 001989 945 LMIEPTESESKSWTGIVMLSSPS 967 (985)
Q Consensus 945 lris~t~~~t~eeId~~~~~~~l 967 (985)
+|++++ +++|+++ +++.|
T Consensus 328 iRls~~---~~~~i~~--~~~~l 345 (346)
T TIGR01141 328 LRITVG---TREENDR--FLAAL 345 (346)
T ss_pred EEEecC---CHHHHHH--HHHHh
Confidence 999974 8999999 55544
No 158
>PRK06108 aspartate aminotransferase; Provisional
Probab=99.77 E-value=7.4e-17 Score=186.27 Aligned_cols=301 Identities=13% Similarity=0.116 Sum_probs=192.4
Q ss_pred hhhHHHHHHHHHHHHHHHhC--CCccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 627 AQGYQEMFNNLGEWLCTITG--FDSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G--~~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
.+|..++.+.+.+++.+.+| .+...+.. +++++|...++.++ . .++++|+++++.|..+...++..|++
T Consensus 60 ~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l---~-----~~gd~vl~~~p~y~~~~~~~~~~g~~ 131 (382)
T PRK06108 60 NLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQAL---V-----GPGDEVVAVTPLWPNLVAAPKILGAR 131 (382)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHh---c-----CCCCEEEEeCCCccchHHHHHHCCCE
Confidence 36777777788888888878 44444444 45555553333322 1 36789999998888887788899999
Q ss_pred EEEEcCCC---CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccccC--
Q 001989 704 IVSVGTDA---KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVG-- 775 (985)
Q Consensus 704 vv~v~~d~---~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~~-- 775 (985)
++.+|.+. ++.+|+++|+++++ +++++|++++| |++|.+. .++++|.++|+++|+++++|+++......
T Consensus 132 ~~~v~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~ 208 (382)
T PRK06108 132 VVCVPLDFGGGGWTLDLDRLLAAIT---PRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPG 208 (382)
T ss_pred EEEeeCCCCCCCccCCHHHHHHhcC---ccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCC
Confidence 99999864 24699999999987 68899999998 5799775 25789999999999999999987421111
Q ss_pred CCCC------CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 776 LTSP------GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 776 l~~p------g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
-..+ ......+++.|++|+|+. .|.++|++++++++.+.+.... . ....+.+
T Consensus 209 ~~~~~~~~~~~~~~~~i~~~S~SK~~g~----~G~RiG~~~~~~~~~~~~~~~~-~-----------~~~~~~~------ 266 (382)
T PRK06108 209 GRAPSFLDIAEPDDRIIFVNSFSKNWAM----TGWRLGWLVAPPALGQVLEKLI-E-----------YNTSCVA------ 266 (382)
T ss_pred CCCCCHhhcCCCcCCEEEEeechhhccC----cccceeeeeCCHHHHHHHHHHH-H-----------hcccCCC------
Confidence 0001 011234778899998854 3678999999876655442110 0 0011111
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM- 928 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~- 928 (985)
.....++...+. .+.+.+++..++..++.+++.+.|++...+.+..+.+..+ +.+.++. ..+..+++++|.
T Consensus 267 ~~~q~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~~--~~~~l~~-----~~~~~~~~~~ll~ 338 (382)
T PRK06108 267 QFVQRAAVAALD-EGEDFVAELVARLRRSRDHLVDALRALPGVEVAKPDGAMY--AFFRIPG-----VTDSLALAKRLVD 338 (382)
T ss_pred hHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEE--EEEeCCC-----CCCHHHHHHHHHH
Confidence 111122223332 2334456666677788888999887622222222222222 2345541 246778999885
Q ss_pred HCCCccCC-CCC-C-CCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 929 DYGFHGPT-MSW-P-VPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 929 ~~Gi~~~~-~~~-p-~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
++||.+.. ..| + ..+++|++++. +.++++. .++.|++.++
T Consensus 339 ~~gV~v~pg~~f~~~~~~~~Ris~~~--~~~~l~~--~l~~l~~~l~ 381 (382)
T PRK06108 339 EAGLGLAPGTAFGPGGEGFLRWCFAR--DPARLDE--AVERLRRFLA 381 (382)
T ss_pred hCCEEEeCchhhCCCCCCEEEEEecC--CHHHHHH--HHHHHHHHHh
Confidence 57998743 222 1 25799999987 8899999 6677776654
No 159
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=99.77 E-value=1.5e-17 Score=188.50 Aligned_cols=266 Identities=18% Similarity=0.194 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-- 288 (985)
..|.|+|+.+|+++|++.+.+ +++|+|.++.+++++.. . +||+|++++++|.|+...+.. .|++++++++
T Consensus 66 G~I~eAe~~aA~~fGAd~t~f-lvnGsT~g~~a~i~a~~-~--~gd~VLv~RN~HkSv~~alil----~ga~Pvyi~p~~ 137 (417)
T PF01276_consen 66 GIIKEAEELAARAFGADKTFF-LVNGSTSGNQAMIMALC-R--PGDKVLVDRNCHKSVYNALIL----SGAIPVYIPPED 137 (417)
T ss_dssp THHHHHHHHHHHHHTESEEEE-ESSHHHHHHHHHHHHHT-T--TTCEEEEETT--HHHHHHHHH----HTEEEEEEEEEE
T ss_pred cHHHHHHHHHHHhcCCCeEEE-EecCchHHHHHHHHHhc-C--CCCEEEEcCCcHHHHHHHHHH----cCCeEEEecCCc
Confidence 568899999999999998755 67889999999998763 3 899999999999999998753 4888888754
Q ss_pred ----------------hhhhc-c--CCCEeE---EEEEcCCCCeeeccHHHHHHHHHhCCcEEEEE----ecCccccCCC
Q 001989 289 ----------------KDIDY-K--SGDVCG---VLVQYPGTEGEVLDYGDFIKNAHANGVKVVMA----TDLLALTILK 342 (985)
Q Consensus 289 ----------------~~l~~-l--~~~t~~---V~v~~pn~~G~v~di~~I~~~a~~~galliV~----a~~~~lg~l~ 342 (985)
+++++ + .++.++ |++++|||+|.+.|+++|+++||++|.+++|| ++.....++.
T Consensus 138 ~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~ 217 (417)
T PF01276_consen 138 NEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTYYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPR 217 (417)
T ss_dssp -TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGT
T ss_pred cccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCCCeEEECHHHHHHHhcccCCEEEEEccccccccCCCCcc
Confidence 23333 3 355555 99999999999999999999999999999993 2322223334
Q ss_pred CCCcccce-------EEEecC-ccccccCCCCCCcEEEEEEchhh-HhcCCCceeeeeecCCCCcceeeecccccccccc
Q 001989 343 PPGELGAD-------IVVGSA-QRFGVPMGYGGPHAAFLATSQEY-KRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR 413 (985)
Q Consensus 343 ~~~~~GaD-------i~v~s~-k~lg~P~~~GGP~~G~l~~~~~~-~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irr 413 (985)
..-.+||| +++.|. |.++.-. ++++++++... ++. .|.
T Consensus 218 ~a~~~gad~~~~~~~~vvqS~HKtL~alt-----Qts~lh~~~~~~v~~----------------------------~~~ 264 (417)
T PF01276_consen 218 SALALGADRPNDPGIIVVQSTHKTLPALT-----QTSMLHVKGDRIVDH----------------------------ERV 264 (417)
T ss_dssp TCSSTTSS-CTSBEEEEEEEHHHHSSS-T-----T-EEEEEETCCCTTH----------------------------HHH
T ss_pred chhhccCccccccceeeeechhhcccccc-----cceEEEecCCCcccH----------------------------HHH
Confidence 45679999 999999 7675432 46888887643 110 000
Q ss_pred cccCCCccchhHHHHHHHHHH--HHHh-CcchHHHHHHHHHHHHHHHHHHH---hcCCCeEEcCC-----CC--------
Q 001989 414 DKATSNICTAQALLANMAAMY--AVYH-GPEGLKTIAQRVHGLAGTFALGL---KKLGTVEVQGL-----PF-------- 474 (985)
Q Consensus 414 e~atsni~t~~~l~a~~aa~~--l~~~-g~~Gl~~i~~~~~~~a~~l~~~L---~~~g~~~~~~~-----~~-------- 474 (985)
..+-+-.-|+++.+.++|++- ..++ +.+| +++.++..+++..++++| +++.+++++++ +.
T Consensus 265 ~~~l~~~~TTSPSY~lmASlD~a~~~m~~~~G-~~l~~~~i~~a~~~R~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 343 (417)
T PF01276_consen 265 NEALSMHQTTSPSYPLMASLDVARAQMEEEEG-RELLEEAIELAEEFRKKINRLNDIWGFKVLGPEDVGGEGCWDLDPGE 343 (417)
T ss_dssp HHHHHHHS-SS--HHHHHHHHHHHHHHSHHHH-HHHHHHHHHHHHHHHHHHHHHCCT-SSEESS-SEECTCCGCB--TT-
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhcCCCceEecCCccccCCccccccCccc
Confidence 011111224578888898883 2345 3444 567788889999999999 55534777632 11
Q ss_pred --------------cc--eEEEecC-----------C--HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHH
Q 001989 475 --------------FD--TVKVKCA-----------D--AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLE 518 (985)
Q Consensus 475 --------------~~--~~~~~~~-----------~--~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~e 518 (985)
++ .+++.+| + +..+.+.|+++||.++..+...+++-++..+|++
T Consensus 344 ~whgf~~~~~~~~~lDP~K~ti~~pG~~~~g~~~~~Gi~g~~~~~~L~~~~I~~Ek~d~~~vL~l~t~G~t~~ 416 (417)
T PF01276_consen 344 NWHGFEGLADDYYMLDPTKLTINTPGIDADGELSELGIPGYIVEKYLREHGIQVEKTDLYNVLFLFTIGDTKE 416 (417)
T ss_dssp TTT--TT--TTSEEE-TTEEEEE-STBETTSSB-SS---HHHHHHHHHHTTEE-SEEESSEEEEE--TTS-HH
T ss_pred cchhchhcccCccccCCcEEEEEccCcCcCCcccccCCCHHHHHHHHHHcCCEEEeccCccEEEEecCCCCCC
Confidence 12 2555542 2 7889999999999999888888999999988875
No 160
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=99.77 E-value=4e-17 Score=189.37 Aligned_cols=296 Identities=16% Similarity=0.169 Sum_probs=195.6
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEE
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVS 706 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~ 706 (985)
.+|..++.+++++++++++|.+. .+..++|++++.+++.++ .+++|+|+++++.|.++...+...|.+++.
T Consensus 82 ~~G~~~l~~~l~~~la~~~g~~~-~i~~tsG~~a~~~~~~~l--------~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~ 152 (397)
T PRK06939 82 ICGTQDLHKELEEKLAKFLGTED-AILYSSCFDANGGLFETL--------LGKEDAIISDALNHASIIDGVRLCKAKRYR 152 (397)
T ss_pred ccCCcHHHHHHHHHHHHHhCCCc-EEEEcChHHHHHHHHHHh--------CCCCCEEEEEhhhhHHHHHHHHhcCCceEE
Confidence 45777788899999999999763 466677877665544332 147899999998887777777888998887
Q ss_pred EcCCCCCCCCHHHHHHHHHhc---CCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CC--C
Q 001989 707 VGTDAKGNINIEELRKAAEAN---RDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TS--P 779 (985)
Q Consensus 707 v~~d~~g~iD~e~L~~~i~~~---~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~~--p 779 (985)
++. .|++++++++++. +.++++|+..+. |.+|.+. ++++|.++|+++|+++++|+++..+..+. .. +
T Consensus 153 ~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~-~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~ 226 (397)
T PRK06939 153 YAN-----NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIA-PLPEICDLADKYDALVMVDDSHAVGFVGENGRGTV 226 (397)
T ss_pred eCC-----CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcC-CHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHH
Confidence 775 4899999988631 126777776643 4579887 89999999999999999999984332111 00 0
Q ss_pred ---C-ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHH
Q 001989 780 ---G-YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 780 ---g-~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~ 855 (985)
+ ..++|++++|+||+|+ |+.+|++++++++.+.+.... .....++.. .+..+.+
T Consensus 227 ~~~~~~~~~~i~~~S~sK~~~------g~r~G~v~~~~~~~~~l~~~~-----------~~~~~~~~~-----~~~~~~a 284 (397)
T PRK06939 227 EHFGVMDRVDIITGTLGKALG------GASGGYTAGRKEVIDWLRQRS-----------RPYLFSNSL-----APAIVAA 284 (397)
T ss_pred HHcCCCCCCcEEEEECHHHhC------ccCceEEEeCHHHHHHHHHhC-----------ccccccCCC-----CHHHHHH
Confidence 1 1246899999999983 456799998876655442110 000001111 1111222
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCcc
Q 001989 856 SYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHG 934 (985)
Q Consensus 856 a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~ 934 (985)
+.+.+..+. + ..+..++..++++++.+.|++ ++++. .+.+.. +.+.++ .+.+..+++++|.++||.+
T Consensus 285 ~~~al~~~~-~-~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~~~---~~~~~~-----~~~~~~~~~~~L~~~gI~v 352 (397)
T PRK06939 285 SIKVLELLE-E-SDELRDRLWENARYFREGMTAAGFTLG--PGEHPI---IPVMLG-----DAKLAQEFADRLLEEGVYV 352 (397)
T ss_pred HHHHHHHHh-c-CHHHHHHHHHHHHHHHHHHHHcCCCcC--CCCCCE---EEEEEC-----CHHHHHHHHHHHHHCCceE
Confidence 334444432 1 234556677888999999986 44432 111222 222222 1234678999999999987
Q ss_pred CCCCCCC----CCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 935 PTMSWPV----PGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 935 ~~~~~p~----~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
....+|. .+.+|++++..++++||++ +++.|++++++
T Consensus 353 ~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~--~l~~L~~~~~~ 393 (397)
T PRK06939 353 IGFSFPVVPKGQARIRTQMSAAHTKEQLDR--AIDAFEKVGKE 393 (397)
T ss_pred eeeCCCCCCCCCceEEEEECCCCCHHHHHH--HHHHHHHHHHH
Confidence 5433431 3679999999999999999 77888887764
No 161
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.77 E-value=4e-17 Score=190.36 Aligned_cols=311 Identities=14% Similarity=0.145 Sum_probs=193.4
Q ss_pred cceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHH
Q 001989 167 YKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAM 246 (985)
Q Consensus 167 ~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~ 246 (985)
.++|+|.+..|..+.+... .+ .+ +.+ ++..+....|..+...++++.+|+++|.+. ..++.+|+.+.++++.
T Consensus 53 sn~yl~l~~~p~v~~a~~~-~~-~~--~~~--~~~~s~~~~~~~~~~~~Le~~la~~~g~~~--~i~~~sG~~a~~~~i~ 124 (410)
T PRK13392 53 SNDYLGMGQHPDVIGAMVD-AL-DR--YGA--GAGGTRNISGTSHPHVLLERELADLHGKES--ALLFTSGYVSNDAALS 124 (410)
T ss_pred CCCccCCCCCHHHHHHHHH-HH-HH--cCC--CCchhhhcccChHHHHHHHHHHHHHhCCCC--EEEECcHHHHHHHHHH
Confidence 4567888754433333332 22 22 111 111222334555567789999999999753 5566677766555554
Q ss_pred HhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hhhhc-c----CCCEeEEEEEcC-CCCeeeccHHH
Q 001989 247 CNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KDIDY-K----SGDVCGVLVQYP-GTEGEVLDYGD 317 (985)
Q Consensus 247 a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~l~~-l----~~~t~~V~v~~p-n~~G~v~di~~ 317 (985)
++.. ..+++.|+++...|.++...++ ..|.++..++. +++++ + +++|++|++.+| |++|.+.|+++
T Consensus 125 ~l~~-~~~g~~vi~~~~~h~s~~~~~~----~~g~~~~~~~~~d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~ 199 (410)
T PRK13392 125 TLGK-LLPGCVILSDALNHASMIEGIR----RSGAEKQVFRHNDLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEA 199 (410)
T ss_pred HHhc-CCCCCEEEEehhhhHHHHHHHH----HcCCeEEEEeCCCHHHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHH
Confidence 3211 1267889998899999988764 24666665532 33433 2 357899999998 78999999999
Q ss_pred HHHHHHhCCcEEEEEecCccccCCCCCC---------cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCce
Q 001989 318 FIKNAHANGVKVVMATDLLALTILKPPG---------ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRI 387 (985)
Q Consensus 318 I~~~a~~~galliV~a~~~~lg~l~~~~---------~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~ 387 (985)
|.++|+++|++++|| +.+++|.+.+.+ .-.+|+++++. |.|+++ | |+++.++++++.+...
T Consensus 200 i~~l~~~~~~~livD-ea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~------G-G~~~~~~~~~~~l~~~- 270 (410)
T PRK13392 200 ICDLADRYNALTYVD-EVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCL------G-GYIAASADLIDFVRSF- 270 (410)
T ss_pred HHHHHHHcCCEEEEE-CCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhcc------c-chhhcCHHHHHHHHHh-
Confidence 999999999999994 455555432211 11468888887 888642 2 6887777766543100
Q ss_pred eeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCe
Q 001989 388 VGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 388 vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~ 467 (985)
.+.|.+ +... ++....+..+++ ..+... .+..++..++.+++++.|+++| +
T Consensus 271 ---------~~~~~~--------------s~~~-~~~~~~a~~aaL--~~~~~~--~~~~~~~~~~~~~l~~~L~~~g-~ 321 (410)
T PRK13392 271 ---------APGFIF--------------TTAL-PPAVAAGATAAI--RHLKTS--QTERDAHQDRVAALKAKLNANG-I 321 (410)
T ss_pred ---------Ccchhc--------------cCcC-CHHHHHHHHHHH--HHHhcC--HHHHHHHHHHHHHHHHHHHHcC-C
Confidence 000100 0111 011222333333 333222 2345677888999999999987 7
Q ss_pred EEcCCCCcceEEEecCC---HHHHHHHHH-HcCceeeeec-------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 468 EVQGLPFFDTVKVKCAD---AHAIASAAY-KIEMNLRVVD-------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 468 ~~~~~~~~~~~~~~~~~---~~~v~~~L~-~~GI~~~~~~-------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++..+ ..+.+.+..+. +.++.++|. ++||.+.... ...+|++++..+|++|+|+++++|.+
T Consensus 322 ~~~~~-~~~~~~i~~~~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~ 393 (410)
T PRK13392 322 PVMPS-PSHIVPVMVGDPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVA 393 (410)
T ss_pred CCCCC-CCCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 76532 12223333332 568999886 6799886531 25799999999999999999999974
No 162
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=99.77 E-value=9.3e-17 Score=168.03 Aligned_cols=310 Identities=15% Similarity=0.125 Sum_probs=209.0
Q ss_pred HHHHHHHHHHHHHHHhCCCcc--ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcE
Q 001989 630 YQEMFNNLGEWLCTITGFDSF--SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMK 703 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~~--~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~ 703 (985)
..+++.++.+-+..+|..... .++.++|..|.++++.-+. .++|+|++-.. |.+.. .++..|++
T Consensus 48 ~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~l--------ePgd~vLv~~~--G~wg~ra~D~~~r~ga~ 117 (385)
T KOG2862|consen 48 FVQIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLL--------EPGDNVLVVST--GTWGQRAADCARRYGAE 117 (385)
T ss_pred HHHHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhc--------CCCCeEEEEEe--chHHHHHHHHHHhhCce
Confidence 446777888888888876553 4567888888887765332 47888887543 33322 25789999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC-HHHHHHHHHHcCCEEEEEccccccccCC-CCCC
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG-IDEICKIIHDNGGQVYMDGANMNAQVGL-TSPG 780 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d-i~eI~~la~~~galliVD~a~~~~~~~l-~~pg 780 (985)
|..|+.+..+.+.++.+++++.+| +.++|++++. +.+|+.+ | ++.+.++||+|+++++||++.+ +++. -...
T Consensus 118 V~~v~~~~G~~~~le~i~~~lsqh--~p~~vfv~hgdsSTgV~q-~~~~~~g~lc~k~~~lllVD~VaS--lggt~F~mD 192 (385)
T KOG2862|consen 118 VDVVEADIGQAVPLEEITEKLSQH--KPKAVFVTHGDSSTGVLQ-DLLAISGELCHKHEALLLVDTVAS--LGGTEFEMD 192 (385)
T ss_pred eeEEecCcccCccHHHHHHHHHhc--CCceEEEEecCccccccc-hHHHHHHHHhhcCCeEEEEechhh--cCCccceeh
Confidence 999998888899999999999975 4567888886 5699999 6 8888999999999999999864 4443 1457
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCc---cccCCCC---CC-C--CCC-CCCCCCCCcchhhh
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHP---VVSTGGI---PA-P--EKS-QPLGTIAAAPWGSA 850 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~---~g~~~~~---~~-~--~~~-~~~~~i~s~~~g~~ 850 (985)
+||+|+.-..++|.++.| ||+++|+.++.....+..+- +...-|. ++ | ..+ +......+ -+.
T Consensus 193 ewgVDvaytgSQKaL~aP-----~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~p---v~l 264 (385)
T KOG2862|consen 193 EWGVDVAYTGSQKALGAP-----AGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPP---VQL 264 (385)
T ss_pred hhcccEEEecchhhcCCC-----CCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCc---HHH
Confidence 899999999999999644 58899998876544332110 0000010 00 0 000 01111111 011
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCC--CceeeEEEEEecCccccCCCCHHHHHHHH
Q 001989 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVN--GTVAHEFIVDLRGLKNTAGIEPEDVAKRL 927 (985)
Q Consensus 851 ~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~--~~~~~~~iv~~~~~~~~~g~~~~~v~~~L 927 (985)
+ -.--++|+.+-++|+.+..+++.+++++++..|++ |++.....+. .+.. ..+.++ .+++..+|+.++
T Consensus 265 l--y~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlptv--ttv~vp-----~gvDw~dVv~~~ 335 (385)
T KOG2862|consen 265 L--YSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALGLQLFVVDEELRLPTV--TTVKVP-----YGVDWKDVVAYA 335 (385)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceecChhhccCcc--eeeecC-----CCCCHHHHHHHH
Confidence 1 11125567777899999999999999999999998 7765332211 1222 234444 478999999999
Q ss_pred HHC-CCccCC-CCCCCCCEEEEecc-CCCCHHHHHHHHccCChhHHHHh
Q 001989 928 MDY-GFHGPT-MSWPVPGTLMIEPT-ESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 928 ~~~-Gi~~~~-~~~p~~~~lris~t-~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+++ ++.++. +..-++..+||... ..-+.|-||+ .++.|++.+++
T Consensus 336 ~~~~~vei~gglg~~~gKv~RIGl~gcna~~e~i~~--v~~ll~~alq~ 382 (385)
T KOG2862|consen 336 MSHYVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDN--VVELLKLALQR 382 (385)
T ss_pred HHhcCEEeccccCCCcccEEEEEEeeccCCcHHHHH--HHHHHHHHHhh
Confidence 887 555543 32224567899876 4567788888 56777777654
No 163
>PRK07678 aminotransferase; Validated
Probab=99.77 E-value=7.8e-17 Score=189.03 Aligned_cols=344 Identities=16% Similarity=0.189 Sum_probs=207.8
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~ 671 (985)
..||++++.+..+...+......+...++. +...++.+.|+++++.....++.+||++|++++++.+|.|
T Consensus 59 ~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~----------~~~~~lae~l~~~~~~~~~v~f~~sGseA~e~AlklAr~~ 128 (451)
T PRK07678 59 VNVGYGRKELAEAAYEQLKTLSYFPLTQSH----------EPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQY 128 (451)
T ss_pred hcCCCCCHHHHHHHHHHHHhcCccccccCC----------HHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHH
Confidence 458888777776554443222222111111 1234778888888865444577899999999999999988
Q ss_pred HHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCCCC---------CC---HHHHHHHHH-
Q 001989 672 HKARGDHHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAKGN---------IN---IEELRKAAE- 725 (985)
Q Consensus 672 ~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~g~---------iD---~e~L~~~i~- 725 (985)
...+|..++.+||. ...+||....+....|. .+..+|.....+ .| ++.+++.++
T Consensus 129 t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (451)
T PRK07678 129 HAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTW 208 (451)
T ss_pred HHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHh
Confidence 64444334566765 66899987655432221 123333321111 12 234566675
Q ss_pred hcCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCc------cC--CcEEEeCCcc
Q 001989 726 ANRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY------IG--ADVCHLNLHK 793 (985)
Q Consensus 726 ~~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~------~g--~Di~~~s~hK 793 (985)
.+.+++++|+++-. ...|++.+ -++++.++|+++|+++|+|+++ .|+.+.|. +| +|+++++ |
T Consensus 209 ~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~----tGfGRtG~~~~~~~~gv~PDivt~g--K 282 (451)
T PRK07678 209 ELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVI----CGFGRTGKAFGFMNYGVKPDIITMA--K 282 (451)
T ss_pred cCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehh----hcCCcCchhHHHHhcCCCCCEEEee--c
Confidence 33467899998753 34566652 2899999999999999999886 34444442 22 7998763 7
Q ss_pred cccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHH
Q 001989 794 TFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEAS 872 (985)
Q Consensus 794 ~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~ 872 (985)
.++ +|. | +|.+++++++.+.+..... .......+++.|+++.++++.+.|..+..+++.
T Consensus 283 ~lg----gG~~P-i~av~~~~~i~~~~~~~~~------------~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~--- 342 (451)
T PRK07678 283 GIT----SAYLP-LSATAVKKEIYEAFKGKGE------------YEHFRHVNTFGGNPAACALALKNLEIMENENLI--- 342 (451)
T ss_pred ccc----cCCcc-eeEEEEcHHHHHHHhccCc------------ccccccCCCCCcCHHHHHHHHHHHHHHHhCCHH---
Confidence 764 343 5 6666778776654432100 000011235667888888889999988776543
Q ss_pred HHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecC-cccc-CCCCHHHHHHHHHHCCCccCCCCC--C-CC
Q 001989 873 KIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRG-LKNT-AGIEPEDVAKRLMDYGFHGPTMSW--P-VP 942 (985)
Q Consensus 873 ~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~-~~~~-~g~~~~~v~~~L~~~Gi~~~~~~~--p-~~ 942 (985)
++..++.++|+++|++. ..++ ..+. + .+..+.+.-+. .+.. .......+.+.|.++|+++..... | ..
T Consensus 343 ~~~~~~g~~l~~~l~~~~~~~~~v~~vrg~-G-l~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~ 420 (451)
T PRK07678 343 ERSAQLGELLLEQLKEELGEHPLVGDIRGK-G-LLVGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKNGDTVAGYN 420 (451)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEEEee-c-eEEEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeecCccccCCC
Confidence 45667778888877541 2221 1121 1 12112221000 0000 001145788889999998753221 1 13
Q ss_pred CEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 943 GTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 943 ~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+.||++|+..+|++|||+ +++++++++.++|
T Consensus 421 ~~lrl~Ppl~it~~eid~--~~~~l~~~l~~~~ 451 (451)
T PRK07678 421 NVLTLSPPLVISSEEIAF--IVGTLKTALERIK 451 (451)
T ss_pred CEEEEECCCcCCHHHHHH--HHHHHHHHHHhcC
Confidence 789999999999999999 8899999988765
No 164
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.77 E-value=5.5e-17 Score=188.91 Aligned_cols=312 Identities=13% Similarity=0.139 Sum_probs=196.5
Q ss_pred ccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHH
Q 001989 166 VYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMA 245 (985)
Q Consensus 166 ~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~ 245 (985)
..++|||...+|..+.+... ++ .+ |.+. +..+....|..+...++++.+|+++|.+. +.++++|+.+.++++
T Consensus 51 ~sn~ylgl~~~p~v~~a~~~-~~-~~--~~~~--~~~s~~~~~~~~~~~~le~~la~~~g~~~--~~~~~SG~~An~~ai 122 (406)
T PRK13393 51 CSNDYLGMGQHPAVLAAMHE-AL-DT--CGAG--AGGTRNISGTNHYHVLLEAELADLHGKEA--ALLFTSGYVSNWAAL 122 (406)
T ss_pred ecccccCCCCCHHHHHHHHH-HH-HH--cCCC--CcccccccCChHHHHHHHHHHHHHhCCCc--EEEeCCcHHHHHHHH
Confidence 45678888876554444442 32 22 2221 11223333556677889999999999754 567777776666655
Q ss_pred HHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe---Cchhhhc-c---C-CCEeEEEEEcC-CCCeeeccHH
Q 001989 246 MCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS---DLKDIDY-K---S-GDVCGVLVQYP-GTEGEVLDYG 316 (985)
Q Consensus 246 ~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v---~~~~l~~-l---~-~~t~~V~v~~p-n~~G~v~di~ 316 (985)
.++. ...+++.|++++..|+++...++. .|.+++.+ |++++++ + + +++++|++.++ |++|.+.|++
T Consensus 123 ~~l~-~~~~g~~I~~~~~~H~s~~~~~~~----~g~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~l~ 197 (406)
T PRK13393 123 STLG-SRLPGCVILSDELNHASMIEGIRH----SRAEKRIFRHNDPADLERKLSDLDPHRPKLVAFESVYSMDGDIAPIA 197 (406)
T ss_pred HHhh-cCCCCCEEEEccchhHHHHHHHHH----cCCeEEEeCCCCHHHHHHHHHhccCCCCEEEEEcCCCCCCCchhCHH
Confidence 4322 112568888889999999999853 35555554 4455554 3 2 46788888887 6899999999
Q ss_pred HHHHHHHhCCcEEEEEecCccccCCCCCCc---------ccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCc
Q 001989 317 DFIKNAHANGVKVVMATDLLALTILKPPGE---------LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGR 386 (985)
Q Consensus 317 ~I~~~a~~~galliV~a~~~~lg~l~~~~~---------~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~ 386 (985)
+|.++|+++|++++|| +.++.|++.+.+. -..||++++. |.|+.+ | |++..++++.+.+..
T Consensus 198 ~i~~l~~~~~~~livD-ea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~---G----G~~~~~~~~~~~l~~- 268 (406)
T PRK13393 198 EICDVAEKHGAMTYLD-EVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVM---G----GYITGSAALCDFIRS- 268 (406)
T ss_pred HHHHHHHHcCCEEEEE-CCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhccc---C----ceeeCCHHHHHHHHH-
Confidence 9999999999999994 4555555432221 1258888886 888642 2 677777776655410
Q ss_pred eeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCC
Q 001989 387 IVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGT 466 (985)
Q Consensus 387 ~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~ 466 (985)
..+.|.+ ++-.++....+..+++ ..+...+. ..++..++.+++++.|+++|
T Consensus 269 ---------~~~~~~~---------------t~~~~p~~~aa~~aaL--~~~~~~~~--~~~~~~~~~~~l~~~L~~~g- 319 (406)
T PRK13393 269 ---------FASGFIF---------------TTSLPPAVAAGALASV--RHLKASSA--ERERHQDRVARLRARLDKAG- 319 (406)
T ss_pred ---------hCcCcee---------------cCccCHHHHHHHHHHH--HHHhhCHH--HHHHHHHHHHHHHHHHHHcC-
Confidence 0000110 0000111222333333 33333332 23566788999999999887
Q ss_pred eEEcCCCCcceEEEecCC---HHHHHHHHHH-cCceeeee-----c--CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 467 VEVQGLPFFDTVKVKCAD---AHAIASAAYK-IEMNLRVV-----D--SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~---~~~v~~~L~~-~GI~~~~~-----~--~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++++.. ..+.+.+..++ +.++.++|.+ +||.++.. . .+.+|++++.++|++|||+++++|..
T Consensus 320 ~~~~~~-~~~i~~v~~~~~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~ 392 (406)
T PRK13393 320 IPHLPN-PSHIVPVMVGDPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSE 392 (406)
T ss_pred CCcCCC-CCCeEEEEeCCHHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 765532 11223333332 6789999987 59988643 1 26799999999999999999999974
No 165
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.77 E-value=3.9e-17 Score=190.31 Aligned_cols=311 Identities=14% Similarity=0.176 Sum_probs=195.2
Q ss_pred ccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHH
Q 001989 166 VYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMA 245 (985)
Q Consensus 166 ~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~ 245 (985)
+.++|||.+..|..+.+... . +.+.+ + ++..+....|..+...++++.+|+++|.+. ..++.+|+.+.++++
T Consensus 52 ~s~dylgl~~~p~v~~a~~~-~-~~~~~--~--~~~~s~~~~g~~~~~~~l~~~la~~~g~~~--~~~~~sG~~an~~ai 123 (407)
T PRK09064 52 CSNDYLGMGQHPKVIEAMIE-A-LDRCG--A--GAGGTRNISGTNHYHVELERELADLHGKEA--ALVFTSGYVSNDATL 123 (407)
T ss_pred ECCCCcCCCCCHHHHHHHHH-H-HHHcC--C--CCCCcCcCccCHHHHHHHHHHHHHHhCCCc--EEEECcHHHHHHHHH
Confidence 45678888864432222221 2 22221 1 111223334556778889999999999653 556677776656554
Q ss_pred HH-hhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe---Cchhhhc-cC----CCEeEEEEEcC-CCCeeeccH
Q 001989 246 MC-NNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS---DLKDIDY-KS----GDVCGVLVQYP-GTEGEVLDY 315 (985)
Q Consensus 246 ~a-~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v---~~~~l~~-l~----~~t~~V~v~~p-n~~G~v~di 315 (985)
.. .+. .+++.|+.+...|.+....++. .++++..+ |++++++ +. +++++|++.++ |++|.+.|+
T Consensus 124 ~~l~~~--~~~~~i~~~~~~h~s~~~~~~~----~~~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~l 197 (407)
T PRK09064 124 STLAKL--IPDCVIFSDELNHASMIEGIRR----SRCEKHIFRHNDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAPI 197 (407)
T ss_pred HHHhCC--CCCCEEEEeCcchHHHHHHHHH----cCCcEEEECCCCHHHHHHHHHhccCCCCeEEEEeCCCCCCccccCH
Confidence 33 222 2567777787889999888753 34454443 3456665 42 56888999887 789999999
Q ss_pred HHHHHHHHhCCcEEEEEecCccccCCCCCC---------cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCC
Q 001989 316 GDFIKNAHANGVKVVMATDLLALTILKPPG---------ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPG 385 (985)
Q Consensus 316 ~~I~~~a~~~galliV~a~~~~lg~l~~~~---------~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~ 385 (985)
++|.++|+++|++++|| +.+++|.+.+.+ ....||++++. |.||.+ | |++++++++++.+..
T Consensus 198 ~~i~~l~~~~~~~livD-Ea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~---G----G~~~~~~~~~~~l~~ 269 (407)
T PRK09064 198 AEICDLADKYNALTYLD-EVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVM---G----GYIAGSAALVDAVRS 269 (407)
T ss_pred HHHHHHHHHcCCEEEEE-CCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhcc---C----ceEecCHHHHHHHHH
Confidence 99999999999999994 455555433221 12468998887 888632 2 688888877665410
Q ss_pred ceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC
Q 001989 386 RIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG 465 (985)
Q Consensus 386 ~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g 465 (985)
. .+.|.+ |... ++....+..+++ .++... +...++..++.+++++.|+++|
T Consensus 270 ~----------~~~~~~--------------t~~~-~~~~~~aa~~al--~~~~~~--~~~~~~~~~~~~~l~~~L~~~g 320 (407)
T PRK09064 270 Y----------APGFIF--------------TTSL-PPAIAAAALASI--RHLKES--NEERERHQERAAKLKAALDAAG 320 (407)
T ss_pred h----------Cccccc--------------cCcC-CHHHHHHHHHHH--HHHhcC--HHHHHHHHHHHHHHHHHHHHcC
Confidence 0 000110 0000 011122222332 444333 3456778899999999999987
Q ss_pred CeEEcCCCCcceEEEecCC---HHHHHHHHHH-cCceeeeec-------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 466 TVEVQGLPFFDTVKVKCAD---AHAIASAAYK-IEMNLRVVD-------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~-~GI~~~~~~-------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++++.+. .+.+.+..++ +.++.++|.+ +||.++... .+.+|++++.++|++|+|+++++|.+
T Consensus 321 -~~~~~~~-~~iv~i~~~~~~~~~~l~~~L~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~ 393 (407)
T PRK09064 321 -IPVMPNE-SHIVPVMVGDPEKCKKASDMLLEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVE 393 (407)
T ss_pred -CCCCCCC-CCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 8766421 2223344332 6789998875 599886531 25799999999999999999999974
No 166
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=99.76 E-value=1.3e-16 Score=185.25 Aligned_cols=328 Identities=16% Similarity=0.189 Sum_probs=216.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCccce----ecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHH
Q 001989 139 MKFSKFDEGLTESQMIEHMQKLASMNKVYKS----FIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLL 214 (985)
Q Consensus 139 ~~lp~~~~~~se~e~~~~~~~l~~~n~~~~~----~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~ 214 (985)
-.+| +.+.++.+++.++..+..++..+.. +...+.-+..+|+...+.+.. +..-+...++.+.++.....
T Consensus 31 ~~~p--~~g~p~~~v~~~l~~~~~~d~~~~~~~p~~~~~~~~~~~~~~~a~~~~~~----~~~~nl~d~~~~p~a~~~E~ 104 (460)
T COG0076 31 RMAP--EKGEPLEEVLDELAELLIKDELYLDGHPRANLAGFCPTRVPPVAAELLVS----ALNKNLGDPDESPAAAELEE 104 (460)
T ss_pred ccCC--ccCCchhhHHHHHHHHhhcccccccCCcceEEEccCCCCCHHHHHHHHHH----HHhhcCCCcccChhHHHHHH
Confidence 3566 5788999999999999777654321 222333334456665433332 22235556677778889999
Q ss_pred HHHHHHHHhcCC-CCcceeeccchHHHHHHHHHHhhhhc----C-------CCCEEEEcCCCChhHHHHHHHhhcCCCeE
Q 001989 215 NFQTMIADLTGL-PMSNASLLDEGTAAAEAMAMCNNIQK----G-------KKKTFIIASNCHPQTIDICITRADGFDIK 282 (985)
Q Consensus 215 e~q~~ia~L~g~-~~~~~sl~~~~ta~~ea~~~a~~~~~----~-------~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~ 282 (985)
+.-.|+++|+|. +....+++.|||.++.-.+++.+... . ...+||+|...|.|+.+.++. .|++
T Consensus 105 ~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~----lG~~ 180 (460)
T COG0076 105 RVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARY----LGLG 180 (460)
T ss_pred HHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHHHHHH----hCCC
Confidence 999999999999 55567888999966553333322210 0 022799999999999999764 3444
Q ss_pred EEEe---------Cchhhhc-cCCCEeE--EEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCcccc--CCCCCCcc
Q 001989 283 VVVS---------DLKDIDY-KSGDVCG--VLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALT--ILKPPGEL 347 (985)
Q Consensus 283 v~~v---------~~~~l~~-l~~~t~~--V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg--~l~~~~~~ 347 (985)
.+.+ |++++++ ++++|.. |+.+.+ +.+|.++||++|+++|+++|++++|++-.-++- .....+.|
T Consensus 181 ~~~v~~~~~~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~ 260 (460)
T COG0076 181 LRRVPTVPTDYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRW 260 (460)
T ss_pred ceeEEeccCccccCHHHHHHHHHhhccCceEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCccchh
Confidence 4443 2356777 7777776 777777 579999999999999999999999965221111 12222343
Q ss_pred -----cceEEEecC-ccccccCCCCCCcEEEEEEchh--hHhcCC--CceeeeeecCCCCcceeeecccccccccccccC
Q 001989 348 -----GADIVVGSA-QRFGVPMGYGGPHAAFLATSQE--YKRMMP--GRIVGVSIDSSGKPALRVAMQTREQHIRRDKAT 417 (985)
Q Consensus 348 -----GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~--~~~~lp--~~~vG~t~d~~g~~~~~l~l~tre~~irre~at 417 (985)
+||-++.++ |.+..|. ++|++.+|++ +.+.+- ..+.+.+ +.+.|.+.. +|
T Consensus 261 ~f~l~~vdSIt~d~HK~g~aP~-----~~G~il~rd~e~l~~~~~~~~~yl~~~----~~~~~ti~~-sr---------- 320 (460)
T COG0076 261 DFGLEGVDSITVDGHKYGLAPI-----GCGVVLFRDEEALRRILIFADYYLPGG----GIPNFTILG-SR---------- 320 (460)
T ss_pred hcCCCCceEEEECcccccCCCC-----CceEEEEECHHHhhhhhhcccccCCCC----CcCceeEee-cc----------
Confidence 789999999 5555564 4567777764 333321 1111100 111122211 11
Q ss_pred CCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC----HHHHHHHHH
Q 001989 418 SNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD----AHAIASAAY 493 (985)
Q Consensus 418 sni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~----~~~v~~~L~ 493 (985)
.+-.++..-.-+..+|.+|++++.+++.++++||+++|++.|.++++.+|..+.|+|+.++ ..+...++.
T Consensus 321 ------~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~~V~fr~~~~~~~~~~~~~~~~ 394 (460)
T COG0076 321 ------PGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKDDEDTLADLSERLD 394 (460)
T ss_pred ------chHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCccceEEEEcCCcccchhchHHHHH
Confidence 1111111111268999999999999999999999999999977999988888899998754 456667777
Q ss_pred HcCceeeee
Q 001989 494 KIEMNLRVV 502 (985)
Q Consensus 494 ~~GI~~~~~ 502 (985)
+.|+.++..
T Consensus 395 ~~gw~v~~~ 403 (460)
T COG0076 395 RRGWQVPAQ 403 (460)
T ss_pred hcCceeecc
Confidence 789987643
No 167
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=99.76 E-value=4.9e-17 Score=190.52 Aligned_cols=324 Identities=17% Similarity=0.213 Sum_probs=206.1
Q ss_pred cccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHH
Q 001989 591 MIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air 669 (985)
...+|+|++.+..+...+......+..+.+ . +...++.+.|++++..+. ..++.+||++|++++++.+|
T Consensus 93 ~~~lGH~~p~v~~Ai~~ql~~l~~~~~~~~-~---------~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr 162 (459)
T PRK11522 93 IFNVGHRNPVVVSAVQNQLAKQPLHSQELL-D---------PLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAK 162 (459)
T ss_pred hhhcCCCCHHHHHHHHHHHhhCcccccccC-C---------HHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHH
Confidence 346888887777665554422222222221 1 224467788888874322 35678999999999999998
Q ss_pred HHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCcE------------EEEEcCCCCCCCCHHHHHHHHHh---cCCCEEE
Q 001989 670 AYHKARGDHHRNVCII-PVSAHGTNPATAAMCGMK------------IVSVGTDAKGNINIEELRKAAEA---NRDNLST 733 (985)
Q Consensus 670 ~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~~------------vv~v~~d~~g~iD~e~L~~~i~~---~~~~t~~ 733 (985)
.|...+ .+.+||. ...+||....+....|-. +..+|. .|.+++++.+++ +.+++++
T Consensus 163 ~~t~~~---gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~~~~iAa 234 (459)
T PRK11522 163 AYQSPR---GKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPF-----GNIEAMRTALSECKKTGDDVAA 234 (459)
T ss_pred HHhccC---CCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCC-----CCHHHHHHHHHHhhccCCcEEE
Confidence 874211 2445665 568999876654432211 222333 378899988863 2356788
Q ss_pred EEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCcccccccCC
Q 001989 734 LMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLHKTFCIPHG 800 (985)
Q Consensus 734 Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~hK~l~~p~g 800 (985)
|+++.. ...|++. + ++++.++|+++|+++|+|++|. |+++.|.+ .+|+++++ |.++
T Consensus 235 vIvEpv~g~~G~~~-pp~~yl~~lr~lc~~~g~llI~DEV~t----G~GRtG~~~a~e~~gv~PDivt~g--K~lg---- 303 (459)
T PRK11522 235 VILEPIQGEGGVIL-PPEGYLTAVRKLCDEFGALLILDEVQT----GMGRTGKMFACEHENVQPDILCLA--KALG---- 303 (459)
T ss_pred EEEecccCCCCCcc-CCHHHHHHHHHHHHHcCCEEEecccee----cCCccchhhhhhccCCCCCEEEec--hhhh----
Confidence 888753 4567776 4 9999999999999999999873 34444432 26988653 7663
Q ss_pred CC-CCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Q 001989 801 GG-GPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNA 879 (985)
Q Consensus 801 ~G-GPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a 879 (985)
+| -|-.+ +++++++...+....+ ...+++.|+++.++++.+.|..+..+++ .++..++.
T Consensus 304 gG~~Piga-v~~~~~i~~~~~~~~~----------------~~~~T~~gnp~~~Aaala~L~~i~~~~l---~~~~~~~g 363 (459)
T PRK11522 304 GGVMPIGA-TIATEEVFSVLFDNPF----------------LHTTTFGGNPLACAAALATINVLLEQNL---PAQAEQKG 363 (459)
T ss_pred CCCcccee-EEEcHHHHHHhccCCc----------------ccCCCCCCCHHHHHHHHHHHHHHhcchH---HHHHHHHH
Confidence 33 26444 4455555433211100 1123456678888888899998877654 45677888
Q ss_pred HHHHHHhhcc---CC-ee--ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCC
Q 001989 880 NYMAKRLEKH---YP-IL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESE 953 (985)
Q Consensus 880 ~~l~~~L~~g---~~-l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~ 953 (985)
++|+++|++. ++ ++ +.+. + .+ +-+.+.. ......+.+.|.++|+++.... +-.+.+|++|+..+
T Consensus 364 ~~l~~~L~~l~~~~~~~i~~VrG~-G-l~--~giel~~-----~~~~~~i~~~l~~~Gvl~~~~~-~~~~~lr~~Ppl~~ 433 (459)
T PRK11522 364 DYLLDGFRQLAREYPDLVQEARGK-G-ML--MAIEFVD-----NEIGYNFASEMFRQRVLVAGTL-NNAKTIRIEPPLTL 433 (459)
T ss_pred HHHHHHHHHHHHhCCCceeeEEec-e-eE--EEEEecC-----chHHHHHHHHHHHCCeEEEecC-CCCCEEEEECCccC
Confidence 9999888752 32 21 1121 1 12 2233321 1125678899999999975432 12478999999999
Q ss_pred CHHHHHHHHccCChhHHHHhhc
Q 001989 954 SKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 954 t~eeId~~~~~~~l~~~~~~~~ 975 (985)
|++|||+ ++++|++++..++
T Consensus 434 t~~~id~--~l~~l~~~l~~~~ 453 (459)
T PRK11522 434 TIEQCEQ--VLKAARKALAAMR 453 (459)
T ss_pred CHHHHHH--HHHHHHHHHHHHH
Confidence 9999999 8899999887655
No 168
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=99.76 E-value=6.6e-17 Score=186.89 Aligned_cols=296 Identities=16% Similarity=0.164 Sum_probs=193.2
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEE
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVS 706 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~ 706 (985)
.+|..++.+++++++++++|.+. .+..++|+++.++++.++ . +++++|++++..|+.+...+...|++++.
T Consensus 73 ~~g~~~l~~~l~~~l~~~~g~~~-~i~~~sG~~a~~~a~~~~---~-----~~gd~vi~~~~~~~~~~~~~~~~g~~~~~ 143 (385)
T TIGR01825 73 IAGTLRLHEELEEKLAKFKKTEA-ALVFQSGFNTNQGVLSAL---L-----RKGDIVLSDELNHASIIDGLRLTKATKKI 143 (385)
T ss_pred ccCCcHHHHHHHHHHHHHhCCCc-EEEECcHHHHHHHHHHHh---C-----CCCCEEEEEccccHHHHHHHHhcCCceEE
Confidence 35667788899999999999764 466677877665443332 1 46788999888888776667778888876
Q ss_pred EcCCCCCCCCHHHHHHHHHhcC-CCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-C------
Q 001989 707 VGTDAKGNINIEELRKAAEANR-DNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-T------ 777 (985)
Q Consensus 707 v~~d~~g~iD~e~L~~~i~~~~-~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~------ 777 (985)
++ .+|++++++.+.+.. +++++|++.++ |.+|.+. |+++|.++|+++|+++++|+++..+..+. .
T Consensus 144 ~~-----~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~-~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~ 217 (385)
T TIGR01825 144 YK-----HADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVA-PLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHH 217 (385)
T ss_pred eC-----CCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCcc-CHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhh
Confidence 65 368999999887432 36888877765 5689988 89999999999999999999985332110 0
Q ss_pred CCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHH
Q 001989 778 SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISY 857 (985)
Q Consensus 778 ~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~ 857 (985)
..-..+.|+++.+++|+|+. +| |+++.++++.+.+.... .....++. . .+....++.
T Consensus 218 ~~~~~~~~i~~~s~sK~~~~------~g-G~~~~~~~~~~~~~~~~-----------~~~~~~~~-~----~~~~~~a~~ 274 (385)
T TIGR01825 218 FGLEDKVDIQVGTLSKAIGV------VG-GYAAGHKELIEYLKNRA-----------RPFLFSTA-Q----PPAVVAALA 274 (385)
T ss_pred cCCCcCCcEEEEeccHHhhc------CC-CEEecCHHHHHHHHHhC-----------ccccccCC-C----CHHHHHHHH
Confidence 01124578889999999843 33 77877766554432110 00000111 1 112222233
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC
Q 001989 858 TYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT 936 (985)
Q Consensus 858 a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~ 936 (985)
+.+..+... .+..++..++++++.+.|++ ++++. .+..+. +.+.+.. ..+..++++.|.++||.+..
T Consensus 275 ~al~~~~~~--~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~---~~~~~~~-----~~~~~~~~~~L~~~gi~v~~ 342 (385)
T TIGR01825 275 AAVDELQRS--PELMERLWDNTRFFKAGLGKLGYDTG--GSETPI---TPVVIGD-----EKAAQEFSRRLFDEGIFAQS 342 (385)
T ss_pred HHHHHHhcC--HHHHHHHHHHHHHHHHHHHHcCCCCC--CCCCCE---EEEEECC-----HHHHHHHHHHHHHCCcEEcc
Confidence 444433221 23445566788999999976 55542 222222 2222220 12357899999999998754
Q ss_pred CCCCC----CCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 937 MSWPV----PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 937 ~~~p~----~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
..+|. .+.+|++++..+++|||++ +++.++++++++
T Consensus 343 ~~~~~~~~~~~~iRi~~~~~~~~e~i~~--~~~~l~~~~~~~ 382 (385)
T TIGR01825 343 IVFPTVPRGTARIRNIPTAEHTKDDLDQ--ALDAYEKVGKEL 382 (385)
T ss_pred cCCCCCCCCCceEEEEEcCCCCHHHHHH--HHHHHHHHHHHh
Confidence 33331 2689999999999999999 788898887654
No 169
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=99.76 E-value=7.1e-17 Score=186.52 Aligned_cols=298 Identities=12% Similarity=0.109 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
.+.++|+.+++++|.+. .+.+++|..++.+++.++. +++|+||+++..|++....+...++++++++++
T Consensus 44 ~~~~LE~~lA~~~g~e~-al~~~sG~~a~~~~i~~l~--------~~GD~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~-- 112 (392)
T PLN03227 44 AHLELEQCMAEFLGTES-AILYSDGASTTSSTVAAFA--------KRGDLLVVDRGVNEALLVGVSLSRANVRWFRHN-- 112 (392)
T ss_pred HHHHHHHHHHHHhCCCc-EEEecCcHHHHHHHHHHhC--------CCCCEEEEeccccHHHHHHHHHcCCeEEEeCCC--
Confidence 46689999999999875 4556677666645444431 478999999998887766667788888888874
Q ss_pred CCCCHHHHHHHHHhc-----------CCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCC-
Q 001989 713 GNINIEELRKAAEAN-----------RDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP- 779 (985)
Q Consensus 713 g~iD~e~L~~~i~~~-----------~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~p- 779 (985)
|++++++.++.. ++++++|+++.+ |..|.+. |+++|.++|+++|+++++|++|..+. +...
T Consensus 113 ---d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~-~l~~i~~l~~~~g~~livDe~~~~g~--~g~~G 186 (392)
T PLN03227 113 ---DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLA-PLKELVALKEEFHYRLILDESFSFGT--LGKSG 186 (392)
T ss_pred ---CHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCccc-CHHHHHHHHHHcCCEEEEECcccccc--cCCCC
Confidence 566666544321 136888888887 5688887 89999999999999999999985332 2211
Q ss_pred ----------CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 780 ----------GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 780 ----------g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
...++|+++++++|.+ ||.+|++++++++.+.+.....+ ..++. +. +
T Consensus 187 ~g~~~~~g~~p~~~~Div~~slsk~~-------g~~gg~v~~~~~~~~~~~~~~~~-----------~~~~~-~~----~ 243 (392)
T PLN03227 187 RGSLEHAGLKPMVHAEIVTFSLENAF-------GSVGGMTVGSEEVVDHQRLSGSG-----------YCFSA-SA----P 243 (392)
T ss_pred CcHHHHcCCCCCCCceEEEeechhhh-------hccCcEEecCHHHHHHHHHhCcC-----------ccccC-CC----C
Confidence 1236799999988876 36667887787655433111000 00111 10 1
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCC------CceeeEEEEEecCccccC----CC
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVN------GTVAHEFIVDLRGLKNTA----GI 918 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~------~~~~~~~iv~~~~~~~~~----g~ 918 (985)
+..+.++.+.+..+.. ..+..++..+++++++++|++ ++..+..... ....+.+.+.+...+... ..
T Consensus 244 p~~~~aa~~al~~~~~--~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~ 321 (392)
T PLN03227 244 PFLAKADATATAGELA--GPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETL 321 (392)
T ss_pred HHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhh
Confidence 2222233333332211 134556778899999999975 3321100000 001112334432100000 00
Q ss_pred CHHHHHHHHHHCCCccCCC------CCC-C-CCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 919 EPEDVAKRLMDYGFHGPTM------SWP-V-PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 919 ~~~~v~~~L~~~Gi~~~~~------~~p-~-~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
...++.++|.++|+.+... ..| + +..+|++++..+|+||||+ ++++|+++++.+
T Consensus 322 ~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~--~~~~l~~~~~~~ 383 (392)
T PLN03227 322 ILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVANASHTREDIDK--LLTVLGEAVEAI 383 (392)
T ss_pred HHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEecCCCCHHHHHH--HHHHHHHHHHHH
Confidence 1248889999999987421 111 1 4789999999999999999 789999988765
No 170
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=99.76 E-value=5.4e-17 Score=187.43 Aligned_cols=290 Identities=14% Similarity=0.110 Sum_probs=186.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 629 GYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
|......++++++++++|.+ ..+++++|+++.++++ +.+ .+++++|++++..|+.+...+...|++++.++
T Consensus 81 g~~~~~~~l~~~la~~~~~~-~~i~~~~g~~~~~~~l---~~~-----~~~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~ 151 (385)
T PRK05958 81 GNSPAHEALEEELAEWFGAE-RALLFSSGYAANLAVL---TAL-----AGKGDLIVSDKLNHASLIDGARLSRARVRRYP 151 (385)
T ss_pred CCcHHHHHHHHHHHHHhCCC-cEEEECcHHHHHHHHH---HHh-----CCCCCEEEEeCccCHHHHHHHHhcCCceEEeC
Confidence 44455778999999999864 3466677777554333 322 14678999999988888777888899998888
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-C-------CC
Q 001989 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-T-------SP 779 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~-------~p 779 (985)
. .|+++++++++..+++++++++.++ |.+|... ++++|+++|+++|+++++|++|..+..+. . ..
T Consensus 152 ~-----~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~-~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~ 225 (385)
T PRK05958 152 H-----NDVDALEALLAKWRAGRALIVTESVFSMDGDLA-PLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGL 225 (385)
T ss_pred C-----CCHHHHHHHHHhccCCCeEEEEEecccCCCCcC-CHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCC
Confidence 6 3899999999742224666666666 4589887 89999999999999999999985432110 0 01
Q ss_pred CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHH
Q 001989 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 780 g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~ 859 (985)
.....++++.++||+|+. +| |+++.++++.+.+.... +....+. .. ++..++++++.
T Consensus 226 ~~~~~~i~~~s~sK~~~~------~G-g~~~~~~~~~~~~~~~~-----------~~~~~~~-~~----~~~~~aa~~aa 282 (385)
T PRK05958 226 AGEPDVILVGTLGKALGS------SG-AAVLGSETLIDYLINRA-----------RPFIFTT-AL----PPAQAAAARAA 282 (385)
T ss_pred CCCCceEEEEechhhccc------CC-cEEEcCHHHHHHHHHhC-----------ccceecC-CC----CHHHHHHHHHH
Confidence 112234778899999842 33 67777766554331100 0000000 01 12223334445
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC
Q 001989 860 IAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS 938 (985)
Q Consensus 860 l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~ 938 (985)
+..+... .+..++..++++++.+.|++ ++++. .+.+.. +.+.++ .+.+..++.++|.++||.+....
T Consensus 283 l~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~~~---~~~~~~-----~~~~~~~~~~~l~~~gI~v~~~~ 350 (385)
T PRK05958 283 LRILRRE--PERRERLAALIARLRAGLRALGFQLM--DSQSAI---QPLIVG-----DNERALALAAALQEQGFWVGAIR 350 (385)
T ss_pred HHHHhcC--HHHHHHHHHHHHHHHHHHHHcCCCcC--CCCCCE---EEEEeC-----CHHHHHHHHHHHHHCCceEeccc
Confidence 5544322 34556778888999999986 45432 222222 334443 12346789999999999986432
Q ss_pred CC----CCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 939 WP----VPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 939 ~p----~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
.+ ..+.+||+++.+++++|+|+ +++.|+++
T Consensus 351 ~~~~~~~~~~lRis~~~~~~~~~i~~--~l~~l~~~ 384 (385)
T PRK05958 351 PPTVPAGTSRLRITLTAAHTEADIDR--LLEALAEA 384 (385)
T ss_pred CCCCCCCCceEEEEecCCCCHHHHHH--HHHHHHhc
Confidence 22 13689999999999999999 66776654
No 171
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=99.76 E-value=1.5e-16 Score=181.20 Aligned_cols=277 Identities=18% Similarity=0.191 Sum_probs=187.8
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001989 206 AQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 206 sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~ 285 (985)
..|......++++.+++++|++. ..++.+||+++.+++.++. ++||+|++++..|+++...++ ..|++++.
T Consensus 41 ~~~~~~~~~~l~~~la~~~~~~~--~iv~~sg~~a~~~~~~~~~---~~gd~Vl~~~~~~~~~~~~~~----~~g~~~~~ 111 (349)
T cd06454 41 ISGTSDLHEELEEELAEFHGKEA--ALVFSSGYAANDGVLSTLA---GKGDLIISDSLNHASIIDGIR----LSGAKKRI 111 (349)
T ss_pred ecCCchHHHHHHHHHHHHhCCCC--EEEeccHHHHHHHHHHHhc---CCCCEEEEehhhhHHHHHHHH----HcCCceEE
Confidence 34556677788899999999874 4566677777666554442 388999999999999887764 35777776
Q ss_pred e---Cchhhhc-cC-----CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC---------CCCc
Q 001989 286 S---DLKDIDY-KS-----GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK---------PPGE 346 (985)
Q Consensus 286 v---~~~~l~~-l~-----~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~---------~~~~ 346 (985)
+ +.+++++ +. +++++|++.++ |.+|.+.|+++|+++||++|+++++|. ..+.|.+. ....
T Consensus 112 ~~~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~-a~~~g~~~~~~~~~~~~~~~~ 190 (349)
T cd06454 112 FKHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDE-AHSVGVYGPHGRGVEEFGGLT 190 (349)
T ss_pred ecCCCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEc-cccccccCCCCCChhhhcccc
Confidence 5 3355665 43 35677777776 789999999999999999999999942 34444331 1245
Q ss_pred ccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhH
Q 001989 347 LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQA 425 (985)
Q Consensus 347 ~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~ 425 (985)
.++|++++|. |.|+. |+ |+++.++++.+.+.... ..|. ..++.+ ...
T Consensus 191 ~~~~i~~~s~sK~~~~------~g-G~i~~~~~~~~~~~~~~----------~~~~------------~~~~~~---~~~ 238 (349)
T cd06454 191 DDVDIIMGTLGKAFGA------VG-GYIAGSKELIDYLRSYA----------RGFI------------FSTSLP---PAV 238 (349)
T ss_pred ccCcEEEeechhhhcc------cC-CEEECCHHHHHHHHHhc----------hhhh------------ccCCCC---HHH
Confidence 7899999998 77653 23 67777877765541100 0010 001111 122
Q ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC-C--HHHHHHHHHHcCceeeee
Q 001989 426 LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA-D--AHAIASAAYKIEMNLRVV 502 (985)
Q Consensus 426 l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-~--~~~v~~~L~~~GI~~~~~ 502 (985)
..++.+++ ..+.. .+++.++..++.+++.+.|.++| +++...+....+.+..+ . +.++.+.|.++||.+...
T Consensus 239 ~~a~~~~l--~~~~~--~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~ 313 (349)
T cd06454 239 AAAALAAL--EVLQG--GPERRERLQENVRYLRRGLKELG-FPVGGSPSHIIPPLIGDDPAKAVAFSDALLERGIYVQAI 313 (349)
T ss_pred HHHHHHHH--HHHhc--CHHHHHHHHHHHHHHHHHHHhcC-CcccCCCCCcEEEEeCCChHHHHHHHHHHHhCCceEEEe
Confidence 33344443 33322 46678889999999999999987 77654322112223233 2 788999999999987542
Q ss_pred -------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 -------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+.+|++++.++|++|+++++++|++
T Consensus 314 ~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 347 (349)
T cd06454 314 RYPTVPRGTARLRISLSAAHTKEDIDRLLEALKE 347 (349)
T ss_pred cCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence 136899999999999999999999974
No 172
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=99.76 E-value=1.2e-16 Score=185.94 Aligned_cols=327 Identities=14% Similarity=0.122 Sum_probs=202.9
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~ 671 (985)
.+||++++.+..+...+......... .+.. +...++.+.++++++.+ ..++.+||++|++++++++|.|
T Consensus 51 ~~lGh~~p~v~~A~~~~~~~~~~~~~--~~~~--------~~~~~la~~l~~~~~~~-~v~~~~sGseA~e~Alk~ar~~ 119 (406)
T PRK12381 51 NALGHAHPALREALNEQASKFWHTGN--GYTN--------EPVLRLAKKLIDATFAD-RVFFCNSGAEANEAALKLARKY 119 (406)
T ss_pred ccCCCCCHHHHHHHHHHHhhcccccC--ccCC--------HHHHHHHHHHHhhCCCC-eEEEcCCcHHHHHHHHHHHHHH
Confidence 46888877666554444321111111 1111 22457888999988765 4577899999999999999887
Q ss_pred HHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEc
Q 001989 672 HKARGDHHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTY 738 (985)
Q Consensus 672 ~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~ 738 (985)
...++..++.+|+. ...+||.........|. .+..+|. .|++++++.++ +++++|+++-
T Consensus 120 ~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~---~~~aaviiEP 191 (406)
T PRK12381 120 AHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAY-----NDLNSASALID---DQTCAVIVEP 191 (406)
T ss_pred HhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCC-----CCHHHHHHhcc---CCeeEEEEeC
Confidence 53333224556665 66789987655443331 1233443 48999999997 7888888863
Q ss_pred CCC-ccccc---cCHHHHHHHHHHcCCEEEEEccccccccCCCCC---Cc--cCCcEEEeCCcccccccCCCCCCceEEE
Q 001989 739 PST-HGVYE---EGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP---GY--IGADVCHLNLHKTFCIPHGGGGPGMGPI 809 (985)
Q Consensus 739 pn~-~G~i~---~di~eI~~la~~~galliVD~a~~~~~~~l~~p---g~--~g~Di~~~s~hK~l~~p~g~GGPg~G~i 809 (985)
.+. .|++. ..+++|.++|+++|+++++|++|. +++-.... .. ..+|++++ .|.++ ||..+|.+
T Consensus 192 v~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~t-G~gr~G~~~~~~~~~v~pDi~t~--sK~l~-----gG~~ig~~ 263 (406)
T PRK12381 192 IQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQT-GVGRTGELYAYMHYGVTPDVLTT--AKALG-----GGFPIGAM 263 (406)
T ss_pred CcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhh-CCCCCcchhhhHhhCCCCCEEEe--hhhhh-----CCCceEEE
Confidence 243 45442 368999999999999999999873 33211111 01 23677644 47774 45678888
Q ss_pred EEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-
Q 001989 810 GVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK- 888 (985)
Q Consensus 810 ~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~- 888 (985)
++++++.+.+..... + +++.++++.++++.+.|..+..+. ..++..++.+++.++|++
T Consensus 264 ~~~~~~~~~~~~~~~---------------~---~t~~~~pl~~aaa~a~l~~l~~~~---~~~~~~~~~~~l~~~L~~l 322 (406)
T PRK12381 264 LTTEKCASVMTVGTH---------------G---TTYGGNPLASAVAGKVLELINTPE---MLNGVKQRHDWFVERLNTI 322 (406)
T ss_pred EEcHHHHhhcCCCCC---------------C---CCCCCCHHHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHH
Confidence 888877765532110 0 112234455555666666664433 445667788889988876
Q ss_pred c--CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCC
Q 001989 889 H--YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSP 966 (985)
Q Consensus 889 g--~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~ 966 (985)
. +.+.........+ +.+.+.. ........+.+.|.++|+.+.... ++.+|++|+..+|++|||+ +++.
T Consensus 323 ~~~~~~~~~vrg~Gl~--~~~~l~~---~~~~~~~~~~~~l~~~Gv~v~~~g---~~~lRl~p~~~~t~~~i~~--~~~~ 392 (406)
T PRK12381 323 NARYGLFSEIRGLGLL--IGCVLNA---EYAGKAKQISQEAAKAGVMVLIAG---PNVVRFAPALNISEEEITT--GLDR 392 (406)
T ss_pred HhhCCCEEEEecCeEE--EEEEecC---chhhHHHHHHHHHHHCCcEEeeCC---CCEEEEeCCccCCHHHHHH--HHHH
Confidence 2 2221111001111 2233320 000135678899999999975332 3699999999999999999 8899
Q ss_pred hhHHHHhhcc
Q 001989 967 SEKKLHRLKM 976 (985)
Q Consensus 967 l~~~~~~~~~ 976 (985)
|++++.++..
T Consensus 393 l~~~l~~~~~ 402 (406)
T PRK12381 393 FARACERFVS 402 (406)
T ss_pred HHHHHHHHHh
Confidence 9999987755
No 173
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.76 E-value=5.3e-16 Score=177.83 Aligned_cols=279 Identities=17% Similarity=0.151 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-- 288 (985)
..+.++++.+|+++|+ .++.+++|+|.++.+++.++ . ++||+|++++..|.+....+ +..|++++.++.
T Consensus 44 ~~~~~l~~~la~~~g~--~~i~~~~g~t~al~~~l~~~-~--~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~ 114 (361)
T cd06452 44 PPIKDFHHDLAEFLGM--DEARVTPGAREGKFAVMHSL-C--EKGDWVVVDGLAHYTSYVAA----ERAGLNVREVPNTG 114 (361)
T ss_pred chHHHHHHHHHHHcCC--ceEEEeCCHHHHHHHHHHHh-c--CCCCEEEEcCCcchHHHHHH----HhcCCEEEEEecCC
Confidence 4577889999999998 45888999998877766654 2 38899999999998887654 346888887754
Q ss_pred --------hhhhc-cC-------CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccce
Q 001989 289 --------KDIDY-KS-------GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGAD 350 (985)
Q Consensus 289 --------~~l~~-l~-------~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaD 350 (985)
+++++ ++ +++++|++++| |.+|.+.|+++|+++||++|++++|| ..++.|.+ ....++|+|
T Consensus 115 ~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD-~a~~~g~~~~~~~~~~~d 193 (361)
T cd06452 115 HPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLN-GAYTVGRMPVSGKELGAD 193 (361)
T ss_pred CCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEE-CCcccCCcCCCHHHcCCC
Confidence 23443 43 37899999998 56999999999999999999999995 34555544 234578999
Q ss_pred EEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHH
Q 001989 351 IVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLAN 429 (985)
Q Consensus 351 i~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~ 429 (985)
++++|+ |+|+.| +++|++++++++++++-... ..|.+. + .....+|++. .+..++
T Consensus 194 ~~~~s~~K~l~~~-----~~~G~l~~~~~~~~~l~~~~----------~~~~~~-----~-~~~~~~~~~~---~~~~~~ 249 (361)
T cd06452 194 FIVGSGHKSMAAS-----APIGVLATTEEWADIVFRTS----------QMFKIK-----E-VELLGCTLRG---APLVTL 249 (361)
T ss_pred EEEecCCccccCC-----CCeEEEEECHHHHHHHhccc----------cccccc-----e-eeeeccccCc---hHHHHH
Confidence 999998 777533 35799999988877652110 001110 0 0001122222 233344
Q ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC-CCeEEcCC--CCcceEEEecCC-----------HHHHHHHHHHc
Q 001989 430 MAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL-GTVEVQGL--PFFDTVKVKCAD-----------AHAIASAAYKI 495 (985)
Q Consensus 430 ~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~-g~~~~~~~--~~~~~~~~~~~~-----------~~~v~~~L~~~ 495 (985)
.+++ .+. .+.++ ...+..+++++++++|+++ | ++++.. ...+.+.++.+. +.++.+.|.++
T Consensus 250 ~~al--~~~-~~~~~-~~~~~~~~~~~l~~~L~~l~g-~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 324 (361)
T cd06452 250 MASF--PHV-KERVK-RWDEEVEKARWFVAELEKIEG-IKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKR 324 (361)
T ss_pred HHHH--HHH-HHHHH-HHHHHHHHHHHHHHHHhcCCC-eEEECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHHHc
Confidence 4443 111 12233 3344456779999999999 6 998732 112223333321 34699999999
Q ss_pred Cceeeee-cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 496 EMNLRVV-DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 496 GI~~~~~-~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
||.+... ....+|++. ...|+||+++++++|++
T Consensus 325 gI~~~~~~~~~~~ri~~-~g~~~e~~~~l~~al~~ 358 (361)
T cd06452 325 GIHGIKPGLTRYFKLST-YGLTWEQVEYVVDAFKE 358 (361)
T ss_pred CceEEcCCCceEEEEEe-cCCCHHHHHHHHHHHHH
Confidence 9985322 235677777 34799999999999973
No 174
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=99.76 E-value=1.7e-16 Score=184.77 Aligned_cols=283 Identities=13% Similarity=0.109 Sum_probs=178.5
Q ss_pred hHhhhHHHHHHHHHH----HHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhH-HHHHHHh-h-
Q 001989 204 EIAQGRLESLLNFQT----MIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQT-IDICITR-A- 276 (985)
Q Consensus 204 e~sqg~l~~i~e~q~----~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~-~~~~~~~-a- 276 (985)
+...| .+.+.++++ .+++++|.+.+.+ .+++||++..+++.++ . ++||+|++++..|.+. ...++-. .
T Consensus 64 r~~~G-~~~~~~lE~~~~~~la~l~g~~~alv-~~~SG~~A~~~~l~al-~--~~GD~Vl~~~~~~~~~~~~g~~~~~~~ 138 (416)
T PRK13034 64 RYYGG-CEFVDEVEALAIERAKQLFGCDYANV-QPHSGSQANGAVYLAL-L--KPGDTILGMSLSHGGHLTHGAKVSLSG 138 (416)
T ss_pred cccCC-ChHHHHHHHHHHHHHHHHhCCCceEE-ecCCcHHHHHHHHHHh-c--CCCCEEEEcCccceeeeecCCcceecc
Confidence 34445 366777777 9999999886322 3578898888888776 3 3899999999999873 2222100 0
Q ss_pred -----cCCCeEE--EEeCchhhhc-cC-CCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCC---
Q 001989 277 -----DGFDIKV--VVSDLKDIDY-KS-GDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPP--- 344 (985)
Q Consensus 277 -----~~~gi~v--~~v~~~~l~~-l~-~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~--- 344 (985)
..++++. ..+|++++++ +. .++++|++.++ .+|...|+++|.++||++|++++|| +.+++|+....
T Consensus 139 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~~-~~g~~~dl~~l~~la~~~g~~livD-~Aha~G~~~~g~~~ 216 (416)
T PRK13034 139 KWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFS-AYPRELDFARFREIADEVGALLMVD-MAHIAGLVAAGEHP 216 (416)
T ss_pred ceeeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECCC-ccccccCHHHHHHHHHHcCCEEEEe-CcccccCcccCCCC
Confidence 0111111 1145677776 53 35777776554 4688889999999999999999994 34555544221
Q ss_pred Cc-ccceEEEecC-ccccccCCCCCCcEEEEEEchh-hHhcCCC-ceeeeeecCCCCcceeeecccccccccccccCCCc
Q 001989 345 GE-LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQE-YKRMMPG-RIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNI 420 (985)
Q Consensus 345 ~~-~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~-~~~~lp~-~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni 420 (985)
+. .++|++++++ |+|++| ..|+++++++ +..++.. +..| ++ ++++
T Consensus 217 ~~~~~~Di~~~s~~K~l~g~------~GG~v~~~~~~~~~~~~~~~~~~--------------~~----------~~~~- 265 (416)
T PRK13034 217 NPFPHAHVVTTTTHKTLRGP------RGGMILTNDEEIAKKINSAVFPG--------------LQ----------GGPL- 265 (416)
T ss_pred CCCCCceEEEEeCcccCCCC------CCeEEEECcHHHHHHHHhhcCCc--------------cc----------CCcc-
Confidence 11 2599999998 777544 2366666543 3222210 0000 00 0011
Q ss_pred cchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-CCcce--EEEecCC--HHHHHHHHHHc
Q 001989 421 CTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDT--VKVKCAD--AHAIASAAYKI 495 (985)
Q Consensus 421 ~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~--~~~~~~~--~~~v~~~L~~~ 495 (985)
+....+...++ ...+ ..+..+..++.++++++|+++|++.| +++... ...+. +.+..++ ...+.++|.++
T Consensus 266 --~~~~aa~~~al-~~~~-~~~~~~~~~~l~~~a~~l~~~L~~~G-~~~~~~~~~t~i~~v~~~~~~~~~~~~~~~L~~~ 340 (416)
T PRK13034 266 --MHVIAAKAVAF-GEAL-QPEFKTYAKQVIANAQALAEVLKERG-YDLVSGGTDNHLLLVDLRPKGLSGKDAEQALERA 340 (416)
T ss_pred --HHHHHHHHHHH-HHHh-ChhHHHHHHHHHHHHHHHHHHHHHcC-CEeccCCCCCcEEEEEcCCCCCCHHHHHHHHHhC
Confidence 11122221111 1222 23445678999999999999999997 988642 22233 4444444 57777899999
Q ss_pred Cceeeee----------cCCeEEEEecc----CCCHHHHHHHHHHHhC
Q 001989 496 EMNLRVV----------DSNTVTASFDE----TTTLEDVDKLFIVFAG 529 (985)
Q Consensus 496 GI~~~~~----------~~~~lris~t~----~~t~edId~li~aL~~ 529 (985)
||++... .+..+|+++++ .+|++|||+++++|..
T Consensus 341 GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~ 388 (416)
T PRK13034 341 GITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILD 388 (416)
T ss_pred CcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHH
Confidence 9988641 24679999999 6679999999999974
No 175
>PRK15029 arginine decarboxylase; Provisional
Probab=99.76 E-value=4.6e-17 Score=196.91 Aligned_cols=279 Identities=12% Similarity=0.049 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-- 288 (985)
..|.|+|+..|+++|++.+++ +++|+|+++.+++++.. ++||+|++++++|.|+...+. ..|++.+++++
T Consensus 205 G~I~eAq~~aA~~fgA~~t~F-lvNGST~gn~a~i~a~~---~~gd~Vlv~RN~HKSv~~al~----L~ga~Pvyl~P~~ 276 (755)
T PRK15029 205 GAFGESEKYAARVFGADRSWS-VVVGTSGSNRTIMQACM---TDNDVVVVDRNCHKSIEQGLI----LTGAKPVYMVPSR 276 (755)
T ss_pred cHHHHHHHHHHHHhCCCcEEE-EeCChhHHHHHHHHHhc---CCCCEEEeecccHHHHHHHHH----HcCCeEEEecccc
Confidence 568899999999999998765 67888888888888753 389999999999999999874 35888888743
Q ss_pred ----------------hhhhc-c--CCCEe--------EEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEE----ecCcc
Q 001989 289 ----------------KDIDY-K--SGDVC--------GVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMA----TDLLA 337 (985)
Q Consensus 289 ----------------~~l~~-l--~~~t~--------~V~v~~pn~~G~v~di~~I~~~a~~~galliV~----a~~~~ 337 (985)
+++++ + .++++ +|++|+|||+|++.|+++|+++||++|++++|| +++..
T Consensus 277 ~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F 356 (755)
T PRK15029 277 NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARF 356 (755)
T ss_pred cccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCCcceeeCHHHHHHHHHhcCCeEEEECcccccccc
Confidence 23433 2 34455 899999999999999999999999999999993 33211
Q ss_pred ccCCC--CCC-----c-ccce-EEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccc
Q 001989 338 LTILK--PPG-----E-LGAD-IVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTR 407 (985)
Q Consensus 338 lg~l~--~~~-----~-~GaD-i~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tr 407 (985)
...+. .+- . .||| +++.|. |+|+.- + ++++++++.. .+.+ |
T Consensus 357 ~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~al-T----QaS~LHv~~~-~~~i---------d-------------- 407 (755)
T PRK15029 357 NPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNAL-S----QASYIHVREG-RGAI---------N-------------- 407 (755)
T ss_pred CccccccccccccccccCCCceEEEEchhhcccch-h----hhhhheeCCC-cccc---------C--------------
Confidence 12221 111 3 7999 899999 666542 2 3467777543 0011 0
Q ss_pred cccccccccCCCccchhHHHHHHHHHHH--HHhCc-chHHHHHHHHHHHHHHHHHHHhcCCC------------------
Q 001989 408 EQHIRRDKATSNICTAQALLANMAAMYA--VYHGP-EGLKTIAQRVHGLAGTFALGLKKLGT------------------ 466 (985)
Q Consensus 408 e~~irre~atsni~t~~~l~a~~aa~~l--~~~g~-~Gl~~i~~~~~~~a~~l~~~L~~~g~------------------ 466 (985)
+.|...+-.-..|+++.|.++|++-. .++.. .| +++.++..+.+..++++|.++.+
T Consensus 408 --~~r~~~~l~~~qSTSPSY~LmASLD~ar~~m~~~~G-~~l~~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~v 484 (755)
T PRK15029 408 --FSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSG-LSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVV 484 (755)
T ss_pred --HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhccccccccccccccccCcccc
Confidence 00011111223356888899999832 23322 34 45677778888899999977642
Q ss_pred ------------------------eEEcCC--C------------Ccce--EEEecCC----HH---------HHHHHHH
Q 001989 467 ------------------------VEVQGL--P------------FFDT--VKVKCAD----AH---------AIASAAY 493 (985)
Q Consensus 467 ------------------------~~~~~~--~------------~~~~--~~~~~~~----~~---------~v~~~L~ 493 (985)
+.++.+ . .++. ++|.+++ +. ++.+.|.
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~lDp~Klti~~~~~g~sG~~~~~gip~~~l~~~L~ 564 (755)
T PRK15029 485 TDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDLPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLG 564 (755)
T ss_pred ccccccccccccccchhhhccccceeeecccccccCcccccccccccCCceEEEEcCCCCCCCcccccCCcHHHHHHHHH
Confidence 222211 0 1232 4555432 33 8999998
Q ss_pred HcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 494 KIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 494 ~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++||.++......+++-++..+|++++++|+++|.+
T Consensus 565 ~~gI~~E~~~~~~vL~l~s~g~t~~~~~~L~~aL~~ 600 (755)
T PRK15029 565 RHGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCS 600 (755)
T ss_pred HcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 899999988888999999999999999999999974
No 176
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=99.76 E-value=1.2e-16 Score=184.45 Aligned_cols=287 Identities=17% Similarity=0.201 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCcEEE---EEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGMKIV---SVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~~vv---~v~~ 709 (985)
..++.+++++..+.+. .++.+||++|+++++.++|.|... +..++++||+ ...+||.........|.... ..|.
T Consensus 80 ~~~la~~l~~~~~~~~-v~f~~SGseA~e~Aik~ar~~~~~-~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~ 157 (395)
T PRK03715 80 MAKLAGLLTQHSCFDK-VFFANSGAEANEGAIKLARKWGRK-HKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQ 157 (395)
T ss_pred HHHHHHHHhhccCCCE-EEEeCCcHHHHHHHHHHHHHHhhc-cCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCC
Confidence 3466677776655543 567899999999999999876421 1123455665 66889987766554443211 1111
Q ss_pred CCC----CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCC
Q 001989 710 DAK----GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 780 (985)
Q Consensus 710 d~~----g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~~pg 780 (985)
..+ ...|+++++++++ +++++|+++... ..|++. + +++|.++|+++|+++|+|++|. + +++.|
T Consensus 158 ~~~~~~~~~~d~~~l~~~l~---~~~aavi~Epv~~~gG~~~-~~~~~l~~l~~l~~~~~~llI~DEv~t-G---~GRtG 229 (395)
T PRK03715 158 VPGFPKAELNDIASVEKLIT---DKTVAVMLEPVQGEGGVIP-ATREFMQQLRALTKQHGLLLIVDEVQT-G---CGRTG 229 (395)
T ss_pred CCCceeeCCchHHHHHHHcC---CCceEEEEeCCcCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEecccc-C---CCCCc
Confidence 111 1258999999986 688899888653 467665 4 9999999999999999999874 3 44444
Q ss_pred cc--------CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 781 YI--------GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 781 ~~--------g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
.+ .+|+++++ |.++ +|-| +|.+++++++..+.++. +.+++.|+++.
T Consensus 230 ~~~a~~~~gv~PDi~t~g--K~lg----~G~p-~~av~~~~~i~~~~~~~-------------------~~~T~~g~pl~ 283 (395)
T PRK03715 230 TLFAYELSGIEPDIMTLG--KGIG----GGVP-LAALLAKAEVAVFEAGD-------------------QGGTYNGNPLM 283 (395)
T ss_pred chhhHhhcCCCCceeeeh--hhhh----CCcc-eEEEEEccccccccCCC-------------------cCCCCCCCHHH
Confidence 32 36887764 8774 3435 55556677765332221 11233456677
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCee-ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL-FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~-~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~ 928 (985)
++++.+.|..+..+++ .++..++.++|+++|++. +.+. ..+. + .+ +.+.+. ......+.+.+.
T Consensus 284 ~aaala~L~~l~~~~l---~~~~~~~g~~l~~~L~~l~~~~~i~~vrG~-G-lm--~~i~l~------~~~~~~~~~~~~ 350 (395)
T PRK03715 284 TAVGVAVISQLLAPGF---LEGVRARGEYLKEKLLELSEERGLEGERGE-G-LL--RALLLG------KDIGPQIVEKAR 350 (395)
T ss_pred HHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHHHhhcCCcCeEEcc-e-eE--EEEEec------CchHHHHHHHHH
Confidence 7888888888865544 456778888999888752 2221 1121 1 11 233332 112344554454
Q ss_pred HC---CCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 929 DY---GFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 929 ~~---Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+. |+++.... .++||++|+..+|++|||+ ++++|++++..+
T Consensus 351 ~~~~~Gi~~~~~~---~~~lR~~p~l~~t~~ei~~--~~~~l~~~l~~~ 394 (395)
T PRK03715 351 DMQPDGLLLNAPR---PNLLRFMPALNVTTEEIDQ--MIAMLRSVLDKL 394 (395)
T ss_pred hccCCCEEEeecC---CCEEEEeCCcccCHHHHHH--HHHHHHHHHHhh
Confidence 44 98875433 3689999999999999999 889998888754
No 177
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=99.75 E-value=4.9e-17 Score=185.76 Aligned_cols=304 Identities=12% Similarity=0.035 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHHHHHhCCCc--cc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH-HHHHHC--CcE
Q 001989 630 YQEMFNNLGEWLCTITGFDS--FS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP-ATAAMC--GMK 703 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~--~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~-~~a~~~--G~~ 703 (985)
..+.++++++.+++++|.+. .. |..+||+.++++++..+ . .+ +.+++....|+... ..++.. +.+
T Consensus 39 f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l---~-----~~-~~l~i~~G~~~~~~~~~a~~~~~~~~ 109 (361)
T TIGR01366 39 VKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGL---I-----EK-KSLHLSFGEFSSKFAKAVKLAPWLGE 109 (361)
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhc---c-----cc-cccEEecCHHHHHHHHHHHhhhccCC
Confidence 45778899999999999853 22 34567887776554432 1 12 23344444444322 223331 226
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
+..++.+++..++. .++ +++++|.+++. |.+|++. |+++| +|++|++++||++|+++...+ +..
T Consensus 110 ~~~~~~~~~~~~~~-----~~~---~~~~lV~~~h~et~tG~~~-pi~~I---~~~~g~~~iVDavqs~g~~~i-dv~-- 174 (361)
T TIGR01366 110 PIIVTADPGSAPEP-----QAD---PGVDVIAWAHNETSTGVAV-PVRRP---EGSDDALVVIDATSGAGGLPV-DIA-- 174 (361)
T ss_pred ceEEecCCCCCCCC-----ccC---CCCCEEEEcccCCccceec-ccccc---cccCCCeEEEEcCccccCCCC-CHH--
Confidence 77777765544443 233 78999988885 6799999 89888 588999999999997555443 223
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccC-----CCC---CCCCCCCCCCCCCCcchhhhHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVST-----GGI---PAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~-----~~~---~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
.+|++++++||+|+.| ||++++++++++.+.+.....+.. .+. .....+..+.++.. . ..+.
T Consensus 175 ~~D~~~~s~~K~lg~~-----~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~----i-~~i~ 244 (361)
T TIGR01366 175 ETDVYYFAPQKNFASD-----GGLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPA----I-ATLA 244 (361)
T ss_pred HCCEEEEEchhhcCCC-----CceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCch----H-HHHH
Confidence 2899999999998532 378888888876544432111110 000 00001122333221 1 1111
Q ss_pred HHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHhhc-c-CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001989 855 ISYTYIAMMGSK-GLTEASKIAILNANYMAKRLEK-H-YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 855 ~a~a~l~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~-g-~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~G 931 (985)
+..+.++.+..+ |+..+.++..+++++++++|++ + +.+....+........++.++ .+.+..++.+.|.++|
T Consensus 245 ~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~~-----~g~~~~~v~~~L~~~g 319 (361)
T TIGR01366 245 LLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDFV-----DDIDAATVAKILRANG 319 (361)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEECC-----CccCHHHHHHHHHHCC
Confidence 122344545455 5777778899999999999987 3 333222211111111234443 3678899999999999
Q ss_pred CccCCCCCCC-CCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 932 FHGPTMSWPV-PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 932 i~~~~~~~p~-~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
|.+....... .+.+||+...++|.+|||+ +++.|+++++++
T Consensus 320 I~i~~~~~~l~~~~vRis~~~~~t~~di~~--l~~al~~~~~~~ 361 (361)
T TIGR01366 320 IVDTEPYRKLGRNQLRVAMFPAIDPDDVEA--LTECVDWVVERL 361 (361)
T ss_pred CeeccCccccCCCcEEEEcCCCCCHHHHHH--HHHHHHHHHhhC
Confidence 9874321111 3679999999999999999 888898887654
No 178
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=99.75 E-value=2.1e-16 Score=183.70 Aligned_cols=296 Identities=15% Similarity=0.192 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhc-CC-CCCCEEEE-cCCCCcccHHHHHHCC--------
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKAR-GD-HHRNVCII-PVSAHGTNPATAAMCG-------- 701 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~-g~-~~~~~IIv-~~~~Hg~~~~~a~~~G-------- 701 (985)
...++++++++++|.+ ..++++||++|+++++.++|.+...+ +. +++++|+. ...+||.........|
T Consensus 80 ~~~~l~~~l~~~~~~~-~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~ 158 (401)
T TIGR01885 80 VFGEFAEYVTKLFGYD-KVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNF 158 (401)
T ss_pred HHHHHHHHHHhhcCCC-EEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCccccccc
Confidence 3567889999999865 45678999999999999888764321 21 13456665 4456887554433322
Q ss_pred ----cEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccc
Q 001989 702 ----MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 702 ----~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~ 773 (985)
..+..+|.+ |+++|+++++++.+++++|+++.+ +..|.+.+ .+++|.++|+++|+++++|++|. ++
T Consensus 159 ~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~-g~ 232 (401)
T TIGR01885 159 GPYVPGFKKIPYN-----NLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQT-GL 232 (401)
T ss_pred CCCCCCceEeCCC-----CHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CC
Confidence 124445543 899999999755567888888765 46788762 29999999999999999999983 43
Q ss_pred cCCCCC-----CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 774 VGLTSP-----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 774 ~~l~~p-----g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
+-.+.. ..+.+|+++++ |.++ +|+..+|+++.++++.+.+..... + +++.+
T Consensus 233 g~~G~~~~~~~~~~~~di~~~g--K~l~----~g~~~ig~v~~~~~i~~~~~~~~~---------------~---~t~~~ 288 (401)
T TIGR01885 233 GRTGKLLCVDHENVKPDIVLLG--KALS----GGVYPVSAVLADDDVMLTIKPGEH---------------G---STYGG 288 (401)
T ss_pred CccchhhHHhhcCCCCCEEEee--cccc----CCCCCcEEEEEcHHHHhhccCCCC---------------C---CCCCC
Confidence 311111 12357888764 8774 355568888888777655432110 0 01122
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL 927 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L 927 (985)
++..+.++.+.|..+..+++. ++..+++++++++|++ +.++.........+..+.+..+. .+.+..++.++|
T Consensus 289 ~p~~~~aa~a~L~~i~~~~l~---~~~~~~~~~~~~~L~~l~~~~~~~~~g~g~~~~i~~~~~~----~~~~~~~l~~~l 361 (401)
T TIGR01885 289 NPLACAVAVAALEVLEEEKLA---ENAEKLGEIFRDQLKKLPKPIITEVRGRGLLNAIVIDESK----TGRTAWDLCLKL 361 (401)
T ss_pred CHHHHHHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHhccCCceeEEeecCeeEEEEeccCc----chhHHHHHHHHH
Confidence 344455566777777654444 4566678999999986 33332110001222222232210 012467899999
Q ss_pred HHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 928 MDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 928 ~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
.++|+.+.... ++.+||+|+..+|++|||+ +++.|++++
T Consensus 362 ~~~Gv~v~~~~---~~~lRi~p~l~~t~~~i~~--~l~~l~~~l 400 (401)
T TIGR01885 362 KEKGLLAKPTH---GNIIRLAPPLVITEEQLDE--GLEIIKKVI 400 (401)
T ss_pred HhCCEEEEecC---CCEEEEeCCccCCHHHHHH--HHHHHHHHh
Confidence 99999875432 4789999999999999999 777777654
No 179
>PLN02624 ornithine-delta-aminotransferase
Probab=99.75 E-value=2.3e-16 Score=186.22 Aligned_cols=325 Identities=17% Similarity=0.235 Sum_probs=199.2
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~ 671 (985)
..+|+|++.+..+...+............. +...++.+.++++++.+. .++.+||++|++++++.+|.|
T Consensus 87 ~~~Gh~~p~v~~ai~~ql~~~~~~~~~~~~----------~~~~~la~~L~~~~~~~~-~~f~~SGseA~e~AlklAr~~ 155 (474)
T PLN02624 87 VNQGHCHPKIIKALTEQAEKLTLSSRAFYN----------DKFPEFAEYLTSMFGYDM-VLPMNTGAEGVETAIKLARKW 155 (474)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCcccccCC----------HHHHHHHHHHHhhcCCCe-EEEeCChHHHHHHHHHHHHHH
Confidence 347777776665544443222211111111 224478889999998764 466799999999999988876
Q ss_pred HHh-cCCC-CCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEE
Q 001989 672 HKA-RGDH-HRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMV 736 (985)
Q Consensus 672 ~~~-~g~~-~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv 736 (985)
... +|.. .+.+||. ...+||....+....+ -.+..+|. .|++.|++.++.+.+++++|++
T Consensus 156 ~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~iaaiii 230 (474)
T PLN02624 156 GYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF-----GDLDALEKIFEEDGDRIAAFLF 230 (474)
T ss_pred HHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC-----CCHHHHHHHHHhCCCCEEEEEE
Confidence 422 2211 1234554 5678987655543221 11334454 2889999999755567999999
Q ss_pred EcC-CCcccccc-C--HHHHHHHHHHcCCEEEEEccccccccCCCCCC--------ccCCcEEEeCCcccccccCCCCCC
Q 001989 737 TYP-STHGVYEE-G--IDEICKIIHDNGGQVYMDGANMNAQVGLTSPG--------YIGADVCHLNLHKTFCIPHGGGGP 804 (985)
Q Consensus 737 ~~p-n~~G~i~~-d--i~eI~~la~~~galliVD~a~~~~~~~l~~pg--------~~g~Di~~~s~hK~l~~p~g~GGP 804 (985)
+.+ +..|.+.+ + +++|.++|+++|+++|+|++|. +++ +.| ...+|+++++ |.| ++|+.
T Consensus 231 Epv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~t-G~G---rtG~~~a~~~~~i~pDiv~ls--K~l----ggG~~ 300 (474)
T PLN02624 231 EPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQT-GLA---RTGKMLACDWEEVRPDVVILG--KAL----GGGVI 300 (474)
T ss_pred CCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CcC---cCcchhhHHhcCCCCCEEEec--ccc----cCCCC
Confidence 876 46787752 2 9999999999999999999984 332 222 2247888763 766 44555
Q ss_pred ceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 001989 805 GMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAK 884 (985)
Q Consensus 805 g~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~ 884 (985)
.+|.+++++++...+.... ..+++.++++.++++.+.|..+..+++. ++..++.+++++
T Consensus 301 pigav~~~~~i~~~~~~~~------------------~~~T~~g~pl~~aaa~aaLe~l~~~~l~---~~~~~~~~~l~~ 359 (474)
T PLN02624 301 PVSAVLADKDVMLCIKPGE------------------HGSTFGGNPLASAVAMAALQVVQDEKLA---ERSAKLGQELRD 359 (474)
T ss_pred cceeeeecHHHHhHhccCC------------------cCCCCCCCHHHHHHHHHHHHHHHhchHH---HHHHHHHHHHHH
Confidence 6788887776554332110 0112223455566666777766554443 345566677777
Q ss_pred Hhhcc---CC-ee--ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHH
Q 001989 885 RLEKH---YP-IL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWT 958 (985)
Q Consensus 885 ~L~~g---~~-l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeI 958 (985)
+|++. +. ++ ..+. + .+..+.++.+. .......++++.|.++|+.+.... .+.|||+|+..+|++||
T Consensus 360 ~L~~l~~~~~~~i~~vrg~-G-~~~~i~l~~~~---~~~~~a~~~~~~L~e~GV~v~p~~---~~~lR~~p~l~~t~e~i 431 (474)
T PLN02624 360 QLQKIQKQFPKLIKEVRGR-G-LLNAVVLNSPK---LGPVSAYDVCLKLKERGLLAKPTH---DTIIRLAPPLSISEDEL 431 (474)
T ss_pred HHHHHHHhCCCceEEEEee-E-EEEEEEecCCC---cChHHHHHHHHHHHhCCeEEecCC---CCEEEEECCccCCHHHH
Confidence 77651 22 11 1111 1 22222222110 001235689999999999975432 47899999999999999
Q ss_pred HHHHccCChhHHHHh
Q 001989 959 GIVMLSSPSEKKLHR 973 (985)
Q Consensus 959 d~~~~~~~l~~~~~~ 973 (985)
|+ +++.|++++..
T Consensus 432 d~--~l~~L~~~l~~ 444 (474)
T PLN02624 432 QE--CSKALSDVLEH 444 (474)
T ss_pred HH--HHHHHHHHHHH
Confidence 99 77888887755
No 180
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=99.75 E-value=1.4e-16 Score=182.12 Aligned_cols=284 Identities=13% Similarity=0.133 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA 711 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~ 711 (985)
....++++.+++++|.+. .+..++|+++.+++ ++.+. +++++|++++..|+.+...++..|++++.++.
T Consensus 61 ~~~~~l~~~la~~~~~~~-~i~~~~G~~~~~~~---l~~~~-----~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-- 129 (360)
T TIGR00858 61 PLHEELEEELAEWKGTEA-ALLFSSGYLANVGV---ISALV-----GKGDLILSDALNHASLIDGCRLSGARVRRYRH-- 129 (360)
T ss_pred HHHHHHHHHHHHHhCCCC-EEEECchHHHHHHH---HHHhC-----CCCCEEEEEccccHHHHHHHHhcCCceEEecC--
Confidence 446678899999998654 56667777665433 33321 46789999988888777778888999988874
Q ss_pred CCCCCHHHHHHHHHhcC-CCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-CC-------Cc
Q 001989 712 KGNINIEELRKAAEANR-DNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-SP-------GY 781 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~-~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-~p-------g~ 781 (985)
+|+++|++++++.. +++++|++.++ |.+|.+. |+++|.++|+++|+++++|++|..+..+.. .+ ..
T Consensus 130 ---~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~-~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 205 (360)
T TIGR00858 130 ---NDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIA-PLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKP 205 (360)
T ss_pred ---CCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCc-CHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCc
Confidence 58999999997432 35788888777 4689887 899999999999999999999853321110 00 11
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~ 861 (985)
.+.|+++.|++|+|+. +| |+++.++++.+.+.... ....... .. .+..++++.+++.
T Consensus 206 ~~~~i~i~s~sK~~~~------~g-G~~~~~~~~~~~~~~~~-----------~~~~~~~-~~----~~~~~~a~~~al~ 262 (360)
T TIGR00858 206 EPVDIQVGTLSKALGS------YG-AYVAGSQALIDYLINRA-----------RTLIFST-AL----PPAVAAAALAALE 262 (360)
T ss_pred cCCcEEEEechhhhhc------cC-cEEEcCHHHHHHHHHhC-----------ccceecC-CC----CHHHHHHHHHHHH
Confidence 3578999999999853 33 78887776554431110 0000000 01 1111222233343
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC-
Q 001989 862 MMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW- 939 (985)
Q Consensus 862 ~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~- 939 (985)
.+.. ..+..++..++++++.+.|++ ++.+. .+.+. .+.+.++. +.+..++.++|.++||.+.....
T Consensus 263 ~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~~---~~~~~~~~-----~~~~~~~~~~l~~~gI~v~~~~~~ 330 (360)
T TIGR00858 263 LIQE--EPWRREKLLALIARLRAGLEALGFTLM--PSCTP---IVPVIIGD-----NASALALAEELQQQGIFVGAIRPP 330 (360)
T ss_pred HHhh--CHHHHHHHHHHHHHHHHHHHHcCCccC--CCCCC---EEEEEeCC-----HHHHHHHHHHHHHCCeeEeeeCCC
Confidence 3321 234556778889999999987 33332 22122 23344431 23467899999999999854221
Q ss_pred --C-CCCEEEEeccCCCCHHHHHHHHccCCh
Q 001989 940 --P-VPGTLMIEPTESESKSWTGIVMLSSPS 967 (985)
Q Consensus 940 --p-~~~~lris~t~~~t~eeId~~~~~~~l 967 (985)
+ ..+.+||+++.+++++|+++ +++.|
T Consensus 331 ~~~~~~~~iRis~~~~~~~~~i~~--~l~~l 359 (360)
T TIGR00858 331 TVPAGTSRLRLTLSAAHTPGDIDR--LAEAL 359 (360)
T ss_pred CCCCCCceEEEEEcCCCCHHHHHH--HHHhh
Confidence 1 23589999999999999999 54544
No 181
>PLN02822 serine palmitoyltransferase
Probab=99.75 E-value=1.9e-16 Score=187.04 Aligned_cols=298 Identities=14% Similarity=0.116 Sum_probs=192.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSV 707 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v 707 (985)
-|..+.+.++++.+++++|.+...++. +|..++.++ ++++. +++|.|++...+|++....+.+.|.+++++
T Consensus 150 yg~~~~~~~Lee~La~~~~~~~~i~~s-~G~~a~~sa---i~a~~-----~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~ 220 (481)
T PLN02822 150 YGTIDVHLDCETKIAKFLGTPDSILYS-YGLSTIFSV---IPAFC-----KKGDIIVADEGVHWGIQNGLYLSRSTIVYF 220 (481)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCEEEEC-CHHHHHHHH---HHHhC-----CCCCEEEEeCCccHHHHHHHHHcCCeEEEE
Confidence 356677889999999999987654444 455455444 33332 467888888888877766778889999999
Q ss_pred cCCCCCCCCHHHHHHHHHhcC------CCE-EEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCC
Q 001989 708 GTDAKGNINIEELRKAAEANR------DNL-STLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 779 (985)
Q Consensus 708 ~~d~~g~iD~e~L~~~i~~~~------~~t-~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~p 779 (985)
+++ |.++++..+++.+ +++ ++|+++.+ +.+|.+. |+++|.++|+++|+++++|++|..+. ++..
T Consensus 221 ~~n-----d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~-~L~~i~~l~~k~~~~LIvDEa~s~gv--lG~~ 292 (481)
T PLN02822 221 KHN-----DMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIA-PLDEIVRLKEKYRFRVLLDESNSFGV--LGKS 292 (481)
T ss_pred CCC-----CHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCcc-CHHHHHHHHHHcCCEEEEECCccccc--cCCC
Confidence 975 6777777665321 234 67777776 4689998 89999999999999999999996332 2222
Q ss_pred C-----c-----cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 780 G-----Y-----IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 780 g-----~-----~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
| . ..+|++++|++|+|+++ | |++++++++.+.+.....+ .+ .+++. .
T Consensus 293 G~G~~e~~~v~~~~~dii~~s~sKalg~~------G-G~i~g~~~ii~~~~~~~~~------------~~--fsa~l--P 349 (481)
T PLN02822 293 GRGLSEHFGVPIEKIDIITAAMGHALATE------G-GFCTGSARVVDHQRLSSSG------------YV--FSASL--P 349 (481)
T ss_pred CCChHHHcCCCCCCCeEEEecchhhhhhC------C-eEEEcCHHHHHHHHhcCCc------------ee--ecccc--C
Confidence 1 1 14689999999998532 2 7888887766543211000 00 01100 1
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCCC---HHHHH
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIE---PEDVA 924 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~---~~~v~ 924 (985)
+..+.++.++|..+.. ..+..++..+++++++++|++ ++.+..+ ...+. +.+.++........+ ..+++
T Consensus 350 p~~~~Aa~~aL~~l~~--~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~-~~spi---~~l~l~~~~~~~~~~~~~~~~~~ 423 (481)
T PLN02822 350 PYLASAAITAIDVLED--NPSVLAKLKENIALLHKGLSDIPGLSIGSN-TLSPI---VFLHLEKSTGSAKEDLSLLEHIA 423 (481)
T ss_pred HHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHhcCCcccCCC-CCCCE---EEEEeCCCcccccchHHHHHHHH
Confidence 2223334445554432 245666788999999999986 4444211 11222 233333100000001 35789
Q ss_pred HHHH-HCCCccCCCCCC------CCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 925 KRLM-DYGFHGPTMSWP------VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 925 ~~L~-~~Gi~~~~~~~p------~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
++|. ++||.+....+| .+..+|++++..+|++||++ +++.|++++..
T Consensus 424 ~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~--~~~~l~~~~~~ 477 (481)
T PLN02822 424 DRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILK--ASESLKRVAAS 477 (481)
T ss_pred HHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHH--HHHHHHHHHHH
Confidence 9987 779987643222 23579999999999999999 88889888765
No 182
>PRK08114 cystathionine beta-lyase; Provisional
Probab=99.75 E-value=2.7e-16 Score=179.60 Aligned_cols=211 Identities=14% Similarity=0.124 Sum_probs=161.6
Q ss_pred HHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hhh
Q 001989 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KDI 291 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~l 291 (985)
.+++.+|+|.|.+. +.++++|++++.++++++ + ++||+||+++..|..+...++.+++.+|+++.+++. +++
T Consensus 66 ~le~~la~LEg~~~--a~~~~SGmaAi~~~~~~l-l--~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~~l 140 (395)
T PRK08114 66 SLQEAMCELEGGAG--CALYPCGAAAVANAILAF-V--EQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDPLIGADI 140 (395)
T ss_pred HHHHHHHHHhCCCe--EEEEhHHHHHHHHHHHHH-c--CCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHHH
Confidence 46789999999875 778899999999888765 3 389999999999999998887777789999999875 456
Q ss_pred hc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCC--cEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 292 DY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANG--VKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 292 ~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~g--alliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++ ++++|++|++++| |++|.+.||++|+++||++| ++++|| +.++.+.+.+|.+|||||++.|+ |+|++|-.
T Consensus 141 ~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVD-nT~a~p~~~~pl~~GaDivv~S~tKyl~Ghsd-- 217 (395)
T PRK08114 141 AKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMID-NTWAAGVLFKALDFGIDISIQAGTKYLVGHSD-- 217 (395)
T ss_pred HHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEE-CCCccccccCHHHcCCcEEEEcCcccccCCCc--
Confidence 66 8889999999997 89999999999999999985 999994 56777888899999999999999 77765422
Q ss_pred CCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 367 GPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 367 GP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
-.+|+++.++++.+.+- ..++..|. .. ++. ..|+...|-+-|.-+
T Consensus 218 -v~~G~v~~~~~~~~~l~-------------------------~~~~~~G~--~~--~p~-----~a~l~~rgl~TL~lR 262 (395)
T PRK08114 218 -AMIGTAVANARCWEQLR-------------------------ENSYLMGQ--MV--DAD-----TAYMTSRGLRTLGVR 262 (395)
T ss_pred -ceeEEEEcCHHHHHHHH-------------------------HHHHhccC--CC--CHH-----HHHHHHcCCCcHHHH
Confidence 24577777765433220 00011111 00 111 124566677777788
Q ss_pred HHHHHHHHHHHHHHHhcCCCeE
Q 001989 447 AQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
.++..++|..+++.|++...++
T Consensus 263 ~~~~~~na~~va~~L~~hp~V~ 284 (395)
T PRK08114 263 LRQHEESSLKVAEWLAEHPEVA 284 (395)
T ss_pred HHHHHHHHHHHHHHHHcCCCEe
Confidence 8899999999999999885454
No 183
>PRK05957 aspartate aminotransferase; Provisional
Probab=99.75 E-value=2.7e-16 Score=182.01 Aligned_cols=302 Identities=15% Similarity=0.114 Sum_probs=190.2
Q ss_pred hhhHHHHHHHHHHHHHHHhCCC---ccceecCcHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCc
Q 001989 627 AQGYQEMFNNLGEWLCTITGFD---SFSLQPNAGA-AGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGM 702 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~---~~~~~~~sGa-~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~ 702 (985)
.+|..++.+.+++++++.+|.+ ...+..++|+ ++...+ ++.+. .++|+|+++++.|..+....+..|+
T Consensus 64 ~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~---~~~~~-----~~gd~Vlv~~P~y~~~~~~~~~~g~ 135 (389)
T PRK05957 64 VQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNA---ILAIT-----DPGDEIILNTPYYFNHEMAITMAGC 135 (389)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHH---HHHhc-----CCCCEEEEeCCCCcCHHHHHHhcCC
Confidence 4687888889999999999974 3345555554 444322 32221 3678999998878777777788999
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cC--C
Q 001989 703 KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VG--L 776 (985)
Q Consensus 703 ~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~--l 776 (985)
+++.+|.+.++.+|+++|+++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++++|+++..-. .. .
T Consensus 136 ~~~~v~~~~~~~~d~~~l~~~i~---~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~ 212 (389)
T PRK05957 136 QPILVPTDDNYQLQPEAIEQAIT---PKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKH 212 (389)
T ss_pred EEEEeecCCCCCcCHHHHHHhcC---cCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCc
Confidence 99999998778899999999997 78999999998 47998872 38999999999999999999863111 10 0
Q ss_pred CC----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 777 TS----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 777 ~~----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
.. +....--|++.|+.|.|+.| |.++|++++++++.+.+.... .+...+.+...+.
T Consensus 213 ~~~~~~~~~~~~~i~~~S~SK~~g~~----GlRiG~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~q~-- 272 (389)
T PRK05957 213 FSPGSIPGSGNHTISLYSLSKAYGFA----SWRIGYMVIPIHLLEAIKKIQ--------------DTILICPPVVSQY-- 272 (389)
T ss_pred cChhhCCCccCcEEEEecchhhccCc----cceeEEEecCHHHHHHHHHHH--------------hhcccCCCcHHHH--
Confidence 01 11112236778888988543 567999999877665543210 0001111111111
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCe-eecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HC
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPI-LFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DY 930 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l-~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~ 930 (985)
++..+|. -+.+-+++..++..++++++.+.|++...+ .+..+.+.++ +.++++ .+.+..+++++|. ++
T Consensus 273 --~~~~~l~-~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~--~~~~~~-----~~~~~~~~~~~l~~~~ 342 (389)
T PRK05957 273 --AALGALQ-VGKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFY--CFLKVN-----TDLNDFELVKQLIREY 342 (389)
T ss_pred --HHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCeeEE--EEEeCC-----CCCChHHHHHHHHHHC
Confidence 1112222 122234555556677788888888752121 1212222222 335554 2567889999987 57
Q ss_pred CCccCCC-CCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 931 GFHGPTM-SWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 931 Gi~~~~~-~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
||.+... .|. ..+++||++... +++++++ .++.|.+.++
T Consensus 343 gv~v~pg~~f~~~~~~~iRis~~~~-~~~~l~~--~~~~l~~~~~ 384 (389)
T PRK05957 343 RVAVIPGTTFGMKNGCYLRIAYGAL-QKATAKE--GIERLVQGLK 384 (389)
T ss_pred CEEEccchhhCCCCCCEEEEEEecC-CHHHHHH--HHHHHHHHHH
Confidence 9986532 222 246899998653 5666666 4455555544
No 184
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=99.75 E-value=4e-16 Score=180.72 Aligned_cols=325 Identities=16% Similarity=0.132 Sum_probs=196.8
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~ 671 (985)
.+||++++.+..+...+......+.+.+ . .+...+++++++++++.+. .++.+||++|++++++++|.|
T Consensus 43 ~~lGh~~p~v~~a~~~~~~~~~~~~~~~--~--------~~~~~~la~~l~~~~~~~~-v~~~~sGseA~~~al~~ar~~ 111 (389)
T PRK01278 43 NSLGHAHPHLVEALKEQAEKLWHVSNLY--R--------IPEQERLAERLVENSFADK-VFFTNSGAEAVECAIKTARRY 111 (389)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCcccccc--C--------ChHHHHHHHHHHhhCCCCE-EEEcCCcHHHHHHHHHHHHHH
Confidence 4678877666655444432111111111 1 1234578888999886553 466789999999999999887
Q ss_pred HHhcCCCCCCEEEE-cCCCCcccHHHHHHCCcEEEE---EcCCCCC----CCCHHHHHHHHHhcCCCEEEEEEEcCC-Cc
Q 001989 672 HKARGDHHRNVCII-PVSAHGTNPATAAMCGMKIVS---VGTDAKG----NINIEELRKAAEANRDNLSTLMVTYPS-TH 742 (985)
Q Consensus 672 ~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~~vv~---v~~d~~g----~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~ 742 (985)
...+|...+++||+ ...+||.........+..... .|..++. ..|+++++++++ +++++|+++.++ ..
T Consensus 112 ~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~avivep~~~~~ 188 (389)
T PRK01278 112 HYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAIT---PNTAAILIEPIQGEG 188 (389)
T ss_pred HHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhC---CCeEEEEEecccCCC
Confidence 55555334457776 556888776655433322111 0111111 158999999997 689999998654 45
Q ss_pred cccc---cCHHHHHHHHHHcCCEEEEEccccccccCCCC--C-C--ccCCcEEEeCCcccccccCCCCCCceEEEEEccc
Q 001989 743 GVYE---EGIDEICKIIHDNGGQVYMDGANMNAQVGLTS--P-G--YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH 814 (985)
Q Consensus 743 G~i~---~di~eI~~la~~~galliVD~a~~~~~~~l~~--p-g--~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~ 814 (985)
|.+. .++++|.++|+++|+++|+|+++. +++-... + . ...+|++++ .|.++ +|..+|.++++++
T Consensus 189 G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~~~~~~~~~~pdi~t~--sK~l~-----~G~~ig~~~~~~~ 260 (389)
T PRK01278 189 GIRPAPDEFLKGLRQLCDENGLLLIFDEVQC-GMGRTGKLFAHEWAGVTPDIMAV--AKGIG-----GGFPLGACLATEE 260 (389)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCCcceeecccCCCCCEEEE--ehhcc-----CCcceEEEEEcHH
Confidence 6332 369999999999999999999884 2221111 0 0 123577654 48774 4567888888877
Q ss_pred ccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CC
Q 001989 815 LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YP 891 (985)
Q Consensus 815 l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~ 891 (985)
+.+.+..... .. ++.+++..++++.+.|..+..+++. ++..++.++++++|++. ..
T Consensus 261 ~~~~~~~~~~--------------~~----t~~~~~~~~aaa~a~l~~l~~~~~~---~~~~~~~~~l~~~l~~l~~~~~ 319 (389)
T PRK01278 261 AAKGMTPGTH--------------GS----TYGGNPLAMAVGNAVLDVILAPGFL---DNVQRMGLYLKQKLEGLVDRFP 319 (389)
T ss_pred HHhccCCCCC--------------CC----CCCccHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHhhCC
Confidence 6655432100 01 1122445555566667666444332 34556667777777641 21
Q ss_pred -eeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 892 -ILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 892 -l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
+.........+ +.+.+. .+..+++++|.++|+.+.... .+.+||+|+...+++||++ +++.|+++
T Consensus 320 ~~~~~v~g~G~~--~~i~~~-------~~~~~~~~~l~~~GV~~~p~~---~~~lR~~p~~~~~~~~i~~--~l~~l~~~ 385 (389)
T PRK01278 320 DVIEEVRGKGLL--LGLKCV-------VPNRDLVQALRDEGLLTVGAG---DNVVRLLPPLIITEEEIDE--ALERLERA 385 (389)
T ss_pred CceeeEecccEE--EEEEEe-------cCHHHHHHHHHHCCeEEeecC---CCEEEEeCCcccCHHHHHH--HHHHHHHH
Confidence 21100001111 223332 246789999999999864322 3789999999999999999 77888887
Q ss_pred HHh
Q 001989 971 LHR 973 (985)
Q Consensus 971 ~~~ 973 (985)
+.+
T Consensus 386 l~~ 388 (389)
T PRK01278 386 AES 388 (389)
T ss_pred HHh
Confidence 764
No 185
>PRK06225 aspartate aminotransferase; Provisional
Probab=99.75 E-value=2.3e-16 Score=182.09 Aligned_cols=297 Identities=14% Similarity=0.169 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHhCCCcccee-cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQ-PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA- 711 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~-~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~- 711 (985)
..++++++++++|.+..++. .+++++|...+ ++.+. .++++|+++++.|..+...++..|++++.++++.
T Consensus 68 ~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~---~~~~~-----~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~ 139 (380)
T PRK06225 68 FPELRELILKDLGLDDDEALITAGATESLYLV---MRAFL-----SPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSE 139 (380)
T ss_pred hHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHH---HHHhc-----CCCCEEEEcCCCCcchHHHHHHhCceEEeeccccc
Confidence 34678899999998775544 44555555333 33321 3678899988877766667788999999998742
Q ss_pred --CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEccccccccCCCCCC--ccCC
Q 001989 712 --KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG--YIGA 784 (985)
Q Consensus 712 --~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~~l~~pg--~~g~ 784 (985)
++.+|+++++++++ +++++|++++|+ ++|.+. .++++|+++|+++|+++++|+++..-..+..... ....
T Consensus 140 ~~~~~~d~~~l~~~~~---~~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~ 216 (380)
T PRK06225 140 ECNYKLTPELVKENMD---ENTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEH 216 (380)
T ss_pred cCCccCCHHHHHhhcC---CCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCCCC
Confidence 35799999999987 789999999984 689874 2599999999999999999998621000100001 1123
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
.+++.+++|+|+.| |.++|++++++++.+.+..... ...+.+ .....++.+.+...
T Consensus 217 ~i~~~s~SK~~g~~----G~RiG~i~~~~~l~~~~~~~~~---------------~~~~~~----~~~~~~a~~~l~~~- 272 (380)
T PRK06225 217 TVTSYSFSKIFGMA----GLRIGAVVATPDLIEVVKSIVI---------------NDLGTN----VIAQEAAIAGLKVK- 272 (380)
T ss_pred EEEEeechhhcCCc----cceeEEEecCHHHHHHHHHHHh---------------cccCCC----HHHHHHHHHHHhcc-
Confidence 56677888998543 5678999998776654422100 011111 11112222333221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-C-C
Q 001989 865 SKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-W-P 940 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~-p 940 (985)
.+-+++..+...++.+++.+.|++ +..+...++ +..+ +.+.++. .+.+..++++.|.++||.+.... + +
T Consensus 273 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~g~~--~~~~~~~----~~~~~~~l~~~l~~~gi~v~~g~~~~~ 345 (380)
T PRK06225 273 DEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPS-HGNM--MVIDISE----AGIDPEDLVEYLLERKIFVRQGTYTSK 345 (380)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCC-CCeE--EEEEccc----ccCCHHHHHHHHHHCCEEEcCCcccCc
Confidence 122233333344556677777775 322221122 2222 3455531 24578899999999999875422 1 1
Q ss_pred --CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 941 --VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 941 --~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
..+.+|+++. .++||+++ +++.|+++++.++.
T Consensus 346 ~~~~~~iR~s~~--~~~e~l~~--~~~~l~~~~~~~~~ 379 (380)
T PRK06225 346 RFGDRYIRVSFS--IPREQVEV--FCEEFPDVVETLRT 379 (380)
T ss_pred CCCCceEEEEeC--CCHHHHHH--HHHHHHHHHHHhhc
Confidence 1368999985 47999999 88999999987764
No 186
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=99.74 E-value=3.8e-16 Score=180.91 Aligned_cols=326 Identities=15% Similarity=0.149 Sum_probs=200.7
Q ss_pred cccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHH
Q 001989 591 MIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~ 670 (985)
...||++++.+..+...+........+.+. . +...++.++|+++++.....++.+||++|++++++.+|.
T Consensus 51 ~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~-~---------~~~~~la~~L~~~~~~~~~v~f~~sGseA~e~AlklAr~ 120 (408)
T PRK04612 51 VCGLGHNDPDLVAALTEQAGKLWHTSNVFY-S---------APPLKLAEELVTASRFAEKVFLCNSGTEANEAAIKLVRK 120 (408)
T ss_pred hccCCCCCHHHHHHHHHHHHhccccccccC-C---------HHHHHHHHHHHhhCCCCCEEEEcCchHHHHHHHHHHHHH
Confidence 345888877777655544322111111111 1 123467788888775333457789999999999999998
Q ss_pred HHHhcCC-CCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEE
Q 001989 671 YHKARGD-HHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMV 736 (985)
Q Consensus 671 ~~~~~g~-~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv 736 (985)
|...+|. .++.+||. ...+||....+....|- .+..+|. .|+++++++++ .+++++|++
T Consensus 121 ~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~--~~~~aavi~ 193 (408)
T PRK04612 121 WASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDF-----NDVEALEAAMA--GGDVAAVML 193 (408)
T ss_pred HHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCC-----CCHHHHHHhhC--CCCEEEEEE
Confidence 8644442 12456665 66899987655432221 1222333 38999999885 245666665
Q ss_pred EcCC-Ccccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCc--------cCCcEEEeCCcccccccCCCCCC
Q 001989 737 TYPS-THGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY--------IGADVCHLNLHKTFCIPHGGGGP 804 (985)
Q Consensus 737 ~~pn-~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~--------~g~Di~~~s~hK~l~~p~g~GGP 804 (985)
+-.+ ..|++.+ .+++|.++|+++|+++|+|+++. + +.+.+. .-+|++++ .|.++ +|.
T Consensus 194 eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g---~gr~G~~~a~~~~~~~pdi~t~--~K~l~-----~G~ 262 (408)
T PRK04612 194 EPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQC-G---MGRTGTLFAHWQEQVTPDIVTL--AKALG-----GGF 262 (408)
T ss_pred CCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C---CCcCCchhhhhhcCCCCCEEEE--cchhc-----CCC
Confidence 4323 3455543 28999999999999999999874 2 333332 12577655 48774 345
Q ss_pred ceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 001989 805 GMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAK 884 (985)
Q Consensus 805 g~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~ 884 (985)
.+|.+++++++.+.+.... . .+++.|++..++++.+.|..+..+.+ .++..++.+++.+
T Consensus 263 piga~~~~~~~~~~~~~~~---------------~---~~t~~~~p~~~aaa~a~L~~~~~~~l---~~~~~~~g~~l~~ 321 (408)
T PRK04612 263 PIGAMLAGPKVAETMQFGA---------------H---GTTFGGNPLAAAVARVALRKLASPQI---AANVARQSAALRA 321 (408)
T ss_pred ceEEEEECHHHHhhhcCCC---------------c---CCCCCCCHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHH
Confidence 5777777776655442210 0 01223455666777777887765543 4566777888888
Q ss_pred Hhhcc---CCee--ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHH
Q 001989 885 RLEKH---YPIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTG 959 (985)
Q Consensus 885 ~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId 959 (985)
+|++. ++++ ..+. + .+. -+.+.. .......++.+.|.++|+.+.... .+.+|+.|+...|++|||
T Consensus 322 ~l~~l~~~~~~i~~vrg~-G-l~~--~i~~~~---~~~~~a~~i~~~l~~~Gvlv~~~g---~~~lRl~Ppl~it~eeid 391 (408)
T PRK04612 322 GLEALNAEFGVFAQVRGR-G-LML--GAVLAP---AHAGQAGAILDLAAEHGLLLLQAG---PDVLRFVPALNLTDAELA 391 (408)
T ss_pred HHHHHHhhCCCeeeeecc-c-eEE--EEEecC---chhhHHHHHHHHHHHCCeEEeeCC---CCEEEEcCCccCCHHHHH
Confidence 88752 3322 1121 1 221 222210 001135678899999999875432 379999999999999999
Q ss_pred HHHccCChhHHHHhhccC
Q 001989 960 IVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 960 ~~~~~~~l~~~~~~~~~~ 977 (985)
+ +++++++++.++...
T Consensus 392 ~--~l~~l~~~l~~~~~~ 407 (408)
T PRK04612 392 D--GLARLRLALADYVAQ 407 (408)
T ss_pred H--HHHHHHHHHHHHhhc
Confidence 9 889999988776543
No 187
>PRK05764 aspartate aminotransferase; Provisional
Probab=99.74 E-value=6e-16 Score=179.48 Aligned_cols=308 Identities=16% Similarity=0.162 Sum_probs=191.2
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+.+.+++.+..|. +...+ ..+++++|+..++.++ . .++++|+++++.|+.+...++..|+++
T Consensus 68 ~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~---~-----~~gd~vl~~~p~y~~~~~~~~~~g~~~ 139 (393)
T PRK05764 68 AGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMAL---L-----DPGDEVIIPAPYWVSYPEMVKLAGGVP 139 (393)
T ss_pred CChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHh---c-----CCCCEEEecCCCCcchHHHHHHcCCEE
Confidence 56655555555555555454 33334 4444555654333322 1 367899999998888877888899999
Q ss_pred EEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cCCC-
Q 001989 705 VSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VGLT- 777 (985)
Q Consensus 705 v~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~l~- 777 (985)
+.+++++ ++.+|+++++++++ +++++|++++|+ ++|.+. .++++|.++|+++|+++++|.++.... .+..
T Consensus 140 ~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~ 216 (393)
T PRK05764 140 VFVPTGEENGFKLTVEQLEAAIT---PKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEF 216 (393)
T ss_pred EEEecCcccCCcCCHHHHHHhhC---ccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCc
Confidence 9999874 35789999999997 788999999984 699884 258999999999999999999874211 1100
Q ss_pred -C-----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 778 -S-----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 778 -~-----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
. +...+.++++.|++|+|+.| |.++|+++.++++.+.+.... . ..+.+++ ..
T Consensus 217 ~~~~~~~~~~~~~~i~~~s~SK~~~~~----G~RiG~i~~~~~~~~~~~~~~-~-----------~~~~~~~------~~ 274 (393)
T PRK05764 217 TSIASLSPELRDRTITVNGFSKAYAMT----GWRLGYAAGPKELIKAMSKLQ-S-----------HSTSNPT------SI 274 (393)
T ss_pred ccHHHcCCCCcCCEEEEecCcccccCc----cceeEEEecCHHHHHHHHHHH-h-----------hcccCCC------hH
Confidence 0 12234578888999998654 567999998877665442110 0 0011111 11
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HC
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DY 930 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~ 930 (985)
...++...+.. ..+.+.+..+...++++++.+.|++..++.+..+.+..+ +.+.++......+.+..++.+.|. ++
T Consensus 275 ~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~ 351 (393)
T PRK05764 275 AQYAAVAALNG-PQDEVEEMRQAFEERRDLMVDGLNEIPGLECPKPEGAFY--VFPNVSKLLGKSITDSLEFAEALLEEA 351 (393)
T ss_pred HHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCcceE--EEEecccccccccCCHHHHHHHHHHhC
Confidence 11112222221 233444555556677888888887621222222323222 233443110001223578888875 57
Q ss_pred CCccCC-CCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 931 GFHGPT-MSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 931 Gi~~~~-~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
||.+.. ..|+..+++||++. .+++++++ +++.|.+.+.++|
T Consensus 352 gi~v~~g~~f~~~~~vRis~~--~~~~~~~~--~i~~l~~~~~~~~ 393 (393)
T PRK05764 352 GVAVVPGIAFGAPGYVRLSYA--TSLEDLEE--GLERIERFLESLK 393 (393)
T ss_pred CEEEccccccCCCCEEEEEec--CCHHHHHH--HHHHHHHHHHhhC
Confidence 998643 33444689999986 47999999 7788888877653
No 188
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.74 E-value=3.9e-16 Score=182.97 Aligned_cols=336 Identities=14% Similarity=0.134 Sum_probs=208.6
Q ss_pred ccccccccCCCccccccccccccccc-cCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~-~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air 669 (985)
..||++++.+..+...+......... .++. +...++.+.++++++.+ ...++.+||++|++++++.+|
T Consensus 66 ~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~----------~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~AlKlA~ 135 (453)
T PRK06943 66 NLFGHANPRINAALKDQLDTLEHAMLAGCTH----------EPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSF 135 (453)
T ss_pred hcCCCCCHHHHHHHHHHHHhcCCccccccCC----------HHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHH
Confidence 45788877777665554322111111 1111 12346788888887643 235778999999999999998
Q ss_pred HHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCC-C-----------CCCHHHHHHHH
Q 001989 670 AYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAK-G-----------NINIEELRKAA 724 (985)
Q Consensus 670 ~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~-g-----------~iD~e~L~~~i 724 (985)
.|...+|..++.+||. ...+||....+....|- .+..+|.... + .-|++++++.+
T Consensus 136 ~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l 215 (453)
T PRK06943 136 HAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLF 215 (453)
T ss_pred HHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHH
Confidence 8765455444567775 67899977544332211 1333443211 1 12357888888
Q ss_pred HhcCCCEEEEEEEc-C-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCC
Q 001989 725 EANRDNLSTLMVTY-P-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNL 791 (985)
Q Consensus 725 ~~~~~~t~~Vvv~~-p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~ 791 (985)
+++.+++++|+++- . ...|++.+ -++++.++|+++|+++|+|+++ .|++++|.+ .+|+++++
T Consensus 216 ~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~----TG~GRtG~~fa~~~~gv~PDivt~g- 290 (453)
T PRK06943 216 AERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIA----VGCGRTGTFFACEQAGVWPDFLCLS- 290 (453)
T ss_pred HhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechh----hCCCCCcchhHHHhCCCCCCeEeee-
Confidence 76667899999875 2 34566542 4899999999999999999876 445555543 27999874
Q ss_pred cccccccCCCC-CCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHH
Q 001989 792 HKTFCIPHGGG-GPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTE 870 (985)
Q Consensus 792 hK~l~~p~g~G-GPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~ 870 (985)
|.++ +| -| +|.+++++++.+.+.... . ... ....+++.|+++.++++.+.|..+.++++.
T Consensus 291 -Kgl~----gG~~P-i~av~~~~ei~~~~~~~~--~---------~~~-~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~- 351 (453)
T PRK06943 291 -KGIS----GGYLP-LSLVLSRDAIFAAFYDDD--V---------TRG-FLHSHSYTGNPLACRAALATLDLFAEDDVL- 351 (453)
T ss_pred -hhhc----cCccc-ceEEEEcHHHHHhhcccC--c---------cCC-ccCCCCCCCCHHHHHHHHHHHHHHHhcCHH-
Confidence 7763 33 25 556666777665442110 0 000 012235667888888899999998776554
Q ss_pred HHHHHHHHHHHHHHHhhcc--CC-ee-ecCCCCceeeEEEEEecCccccCCC-CHHHHHHHHHHCCCccCCCCCCCCCEE
Q 001989 871 ASKIAILNANYMAKRLEKH--YP-IL-FRGVNGTVAHEFIVDLRGLKNTAGI-EPEDVAKRLMDYGFHGPTMSWPVPGTL 945 (985)
Q Consensus 871 ~~~~~~~~a~~l~~~L~~g--~~-l~-~~~~~~~~~~~~iv~~~~~~~~~g~-~~~~v~~~L~~~Gi~~~~~~~p~~~~l 945 (985)
++..+..++|.++|++. .. +. ..+. + .+ +.+.+.. ..+... ....+.+++.++|+++... .+.+
T Consensus 352 --~~~~~~G~~l~~~L~~l~~~~~v~~vrG~-G-l~--~gvel~~-~~~~~~~~~~~i~~~~~~~Gll~~~~----g~~l 420 (453)
T PRK06943 352 --ARNARKSARLRAALAPLAAHPQVRHLRQR-G-TI--FAFDVAL-DGDAARTFSRRFFEAALERELLLRPI----GTTV 420 (453)
T ss_pred --HHHHHHHHHHHHHHHHHhcCCCEEeEecc-c-cE--EEEEEcc-CCCcchHHHHHHHHHHHHCCcEEEec----CCEE
Confidence 45666778888888652 11 11 1121 2 22 2223210 000010 1356888889999987533 3679
Q ss_pred EEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 946 MIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 946 ris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
|++|+..+|++|||+ ++++|++++.++
T Consensus 421 ~~~Ppl~it~~eid~--~~~~l~~al~~~ 447 (453)
T PRK06943 421 YLMPPYVLDDDEIAW--LAERTRATLDAT 447 (453)
T ss_pred EEeCCCcCCHHHHHH--HHHHHHHHHHHH
Confidence 999999999999999 888998888765
No 189
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=99.74 E-value=5.8e-16 Score=180.09 Aligned_cols=294 Identities=15% Similarity=0.126 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHC------------
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMC------------ 700 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~------------ 700 (985)
..+++++++++++.+ ..++.+||++|+++++.++|.|...++...+++||. ...+||.........
T Consensus 84 ~~~l~~~l~~~~~~~-~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~ 162 (403)
T PRK05093 84 ALRLAKKLIDATFAE-RVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPK 162 (403)
T ss_pred HHHHHHHHHhhCCCC-EEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCC
Confidence 347888999988654 456779999999999998887743221123445554 668999876443221
Q ss_pred CcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCC-ccccc---cCHHHHHHHHHHcCCEEEEEccccccccCC
Q 001989 701 GMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPST-HGVYE---EGIDEICKIIHDNGGQVYMDGANMNAQVGL 776 (985)
Q Consensus 701 G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~-~G~i~---~di~eI~~la~~~galliVD~a~~~~~~~l 776 (985)
..+++.+|.+ |++++++.+. +++++|+++..+. .|++. ..+++|.++|+++|+++|+|.++. +++-.
T Consensus 163 ~~~~~~~~~~-----d~~~l~~~l~---~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~ 233 (403)
T PRK05093 163 PADITHVPFN-----DLAAVKAVID---DHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQT-GMGRT 233 (403)
T ss_pred CCCcEEeCCC-----CHHHHHHHhc---CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCCC
Confidence 1234455543 8999999997 7899999985454 45442 139999999999999999999974 33211
Q ss_pred CCC---Cc--cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 777 TSP---GY--IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 777 ~~p---g~--~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
..+ .. ..+|+.++ .|+++ +|..+|++++++++.+.+..... . .. +.+++.
T Consensus 234 g~~~~~~~~~~~pdi~s~--sK~l~-----~G~rig~vv~~~~i~~~l~~~~~-------------~-~t----~~~~~~ 288 (403)
T PRK05093 234 GDLFAYMHYGVTPDILTS--AKALG-----GGFPIGAMLTTAEIASHFKVGTH-------------G-ST----YGGNPL 288 (403)
T ss_pred ccchhhhhcCCCCCEEEe--ccccc-----CCcceEEEEEcHHHHhhcCCCCC-------------C-CC----CCCCHH
Confidence 111 11 23676654 48774 45779999998887665532110 0 01 112334
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-c--CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-H--YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g--~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~ 928 (985)
.+.++.+.|+.+..+ +..++..++.+++.+.|++ + +.+....+....+ +.+.++. .......++++.|.
T Consensus 289 ~~~aa~a~L~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~--~~~~l~~---~~~~~~~~~~~~l~ 360 (403)
T PRK05093 289 ACAVAEAVFDIINTP---EVLEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLL--IGAELKP---QYKGRARDFLNAAA 360 (403)
T ss_pred HHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceE--EEEEecC---cchhHHHHHHHHHH
Confidence 444455555555333 2335667788889988876 2 2221111111111 2233321 00013568999999
Q ss_pred HCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 929 DYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 929 ~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
++|+.+.... .+.+|++|+..++++||++ +++.|++++.++.
T Consensus 361 ~~Gv~v~~~g---~~~lRl~~~~~~~~~~i~~--~~~~l~~~l~~~~ 402 (403)
T PRK05093 361 EEGVMVLVAG---PDVLRFAPSLVIEEADIDE--GLARFEKAVAKVV 402 (403)
T ss_pred HCCeEEecCC---CCEEEEeCCCCCCHHHHHH--HHHHHHHHHHHhc
Confidence 9998875322 3789999999999999999 7899998887653
No 190
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=99.74 E-value=6.7e-16 Score=182.65 Aligned_cols=339 Identities=14% Similarity=0.147 Sum_probs=202.5
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhC-CCc-cceecCcHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITG-FDS-FSLQPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G-~~~-~~~~~~sGa~a~~a~l~air 669 (985)
.+||++++.+..+...+....+.+.... .+..+...++.+.|++++. .+. ..++.+||++|++++++++|
T Consensus 101 ~~lGh~hp~v~~Av~~ql~~~~~~~~~~--------~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr 172 (504)
T PLN02760 101 TALGGSEPRLVAAATEQLNKLPFYHSFW--------NRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVW 172 (504)
T ss_pred cccCCCCHHHHHHHHHHHhhccceeccc--------ccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHH
Confidence 4688887777766555542222221110 0112334577888888753 222 34678999999999999999
Q ss_pred HHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCcE------------EEEEcCCCCCC-------------CCHHHHHHH
Q 001989 670 AYHKARGDHHRNVCII-PVSAHGTNPATAAMCGMK------------IVSVGTDAKGN-------------INIEELRKA 723 (985)
Q Consensus 670 ~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~~------------vv~v~~d~~g~-------------iD~e~L~~~ 723 (985)
.|...+|...+.+||. ...+||.........|.. +..++.+...+ ...++|+++
T Consensus 173 ~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~ 252 (504)
T PLN02760 173 YYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENL 252 (504)
T ss_pred HHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHH
Confidence 8764445333456665 668999865444333221 22333211000 113567777
Q ss_pred HHh-cCCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEe
Q 001989 724 AEA-NRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHL 789 (985)
Q Consensus 724 i~~-~~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~ 789 (985)
+.+ .++++++|+++.. ...|++. + +++|.++|+++|+++|+|+++ .|+++.|.+ -+|++++
T Consensus 253 l~~~~~~~iAAvI~EPv~g~gG~~~-p~~~yl~~lr~lc~~~g~lLI~DEV~----TGfGRtG~~~a~e~~gv~PDivtl 327 (504)
T PLN02760 253 ILKEGPETIAAFIAEPVMGAGGVIP-PPATYFEKIQAVLKKYDILFIADEVI----CAFGRLGTMFGCDKYNIKPDLVSL 327 (504)
T ss_pred HHhcCCCceEEEEECCccCCCCCcC-CCHHHHHHHHHHHHHcCCEEEecchh----hCCcccchhhHHHhcCCCCcEEEe
Confidence 742 3356778877653 3467776 5 999999999999999999887 344444432 2798876
Q ss_pred CCcccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 790 NLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 790 s~hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
+ |.++ +|. |. |.+++++++.+.+.... . . .......+++.|+++.++++.+.|..+..+++
T Consensus 328 g--K~lg----gG~~Pi-gAv~~~~~i~d~~~~~~--~--------~-~~~~~h~~T~~gnPl~~Aaala~Le~i~~~~l 389 (504)
T PLN02760 328 A--KALS----SAYMPI-GAVLVSPEISDVIHSQS--N--------K-LGSFAHGFTYSGHPVSCAVALEALKIYKERNI 389 (504)
T ss_pred c--cccc----CCcccc-ceEeecHHHHhhhhccc--c--------c-ccCcccCCCCCCCHHHHHHHHHHHHHHHhCCH
Confidence 4 7763 332 54 44666777765542110 0 0 00001123455678888888899998876644
Q ss_pred HHHHHHHHHHHHHHHHHhhcc--CCee--ecCCCCceeeEEEEEecCcccc-CCC-----CHHHHHHHHHHCCCccCCCC
Q 001989 869 TEASKIAILNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLRGLKNT-AGI-----EPEDVAKRLMDYGFHGPTMS 938 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g--~~l~--~~~~~~~~~~~~iv~~~~~~~~-~g~-----~~~~v~~~L~~~Gi~~~~~~ 938 (985)
.++..++.++|+++|++. ..++ +.+. + .+ +.+.+..-... ... -...+.+.|.++|+++...
T Consensus 390 ---~~~~~~~g~~l~~~L~~l~~~~~v~~vrG~-G-l~--~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~- 461 (504)
T PLN02760 390 ---PEHVNKIAPRFQDGIKAFSGSPIIGEIRGT-G-LI--LGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVA- 461 (504)
T ss_pred ---HHHHHHHHHHHHHHHHHHhcCCCeeeEEeC-c-eE--EEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEec-
Confidence 456777888888888652 2221 1111 1 12 22222100000 000 0346778889999987532
Q ss_pred CCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 939 WPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 939 ~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.+.+|++|+..+|++|||+ +++++++++..+
T Consensus 462 ---g~~lrl~Ppl~it~eeid~--~~~~l~~al~~~ 492 (504)
T PLN02760 462 ---GDNIMMSPPLIITPEEVDE--LISIYGKALKAT 492 (504)
T ss_pred ---CCEEEEECCCCCCHHHHHH--HHHHHHHHHHHH
Confidence 2689999999999999999 778888887665
No 191
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.73 E-value=9.9e-16 Score=173.84 Aligned_cols=306 Identities=17% Similarity=0.149 Sum_probs=197.6
Q ss_pred cCCCCCCCCCcHHHHHHHHh--CCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCC------CcceeeccchHHHHH
Q 001989 171 IGMGYYNTHVPPVILRNIME--NPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLP------MSNASLLDEGTAAAE 242 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~--~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~------~~~~sl~~~~ta~~e 242 (985)
++.|.||...++.+...+.. .......|. ..+|. .++++.++++++.+ ..++.+++|+|+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~----~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~ 73 (350)
T cd00609 3 LSIGEPDFPPPPEVLEALAAAALRAGLLGYY-----PDPGL----PELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALS 73 (350)
T ss_pred CCCCCCCCCCCHHHHHHHHHHhhccCCCCCC-----CCCCc----HHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHH
Confidence 36677787766666544442 111112222 22233 33455566665544 557888899998887
Q ss_pred HHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch----------hhhc-cCCCEeEEEEEcC-CCCe
Q 001989 243 AMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK----------DIDY-KSGDVCGVLVQYP-GTEG 310 (985)
Q Consensus 243 a~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~----------~l~~-l~~~t~~V~v~~p-n~~G 310 (985)
+++.++. ++|++|++++..|+++...++. .|++++.++.+ +++. .++++++|++++| |++|
T Consensus 74 ~~~~~~~---~~g~~vl~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG 146 (350)
T cd00609 74 LLLRALL---NPGDEVLVPDPTYPGYEAAARL----AGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTG 146 (350)
T ss_pred HHHHHhC---CCCCEEEEcCCCchhHHHHHHH----CCCEEEEEecccccCCccCHHHHHhhcCccceEEEEECCCCCCC
Confidence 7666552 3789999999999999888753 57788777642 2233 5778999999988 6799
Q ss_pred eeccHHHH---HHHHHhCCcEEEEEecCccccC--------CCCCCcccceEEEecC-ccccccCCCCCCcEEEEEEch-
Q 001989 311 EVLDYGDF---IKNAHANGVKVVMATDLLALTI--------LKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQ- 377 (985)
Q Consensus 311 ~v~di~~I---~~~a~~~galliV~a~~~~lg~--------l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~- 377 (985)
.+.|++++ .++||++|++++||. .++.+. +...+.++.|+++++. |+++ .+|+++|++++++
T Consensus 147 ~~~~~~~l~~l~~~~~~~~~~~ivD~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~----~~g~~~G~i~~~~~ 221 (350)
T cd00609 147 AVLSEEELEELAELAKKHGILIISDE-AYAELVYDGEPPPALALLDAYERVIVLRSFSKTFG----LPGLRIGYLIAPPE 221 (350)
T ss_pred cccCHHHHHHHHHHHHhCCeEEEEec-chhhceeCCcccccccCcCccCcEEEEeecccccC----CcccceEEEecCHH
Confidence 99876555 489999999999943 222111 1224678899999998 7775 3467789999998
Q ss_pred hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHH
Q 001989 378 EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTF 457 (985)
Q Consensus 378 ~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l 457 (985)
++.+.+.... + ..+.+.. .....++.+++ ... .++++++.++..++++++
T Consensus 222 ~~~~~~~~~~-------------------------~-~~~~~~~-~~~~~~~~~~l--~~~-~~~~~~~~~~~~~~~~~l 271 (350)
T cd00609 222 ELLERLKKLL-------------------------P-YTTSGPS-TLSQAAAAAAL--DDG-EEHLEELRERYRRRRDAL 271 (350)
T ss_pred HHHHHHHHHH-------------------------H-hcccCCC-hHHHHHHHHHH--hCc-HHHHHHHHHHHHHHHHHH
Confidence 6776652100 0 0011111 12222222221 221 168899999999999999
Q ss_pred HHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 458 ALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 458 ~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~------~~~~lris~t~~~t~edId~li~aL~ 528 (985)
.+.|++.+...+........+.+..+. ...+.+.|.++||.+... .+..+|++++.. ++||++++++|+
T Consensus 272 ~~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~--~~~i~~~~~al~ 349 (350)
T cd00609 272 LEALKELGPLVVVKPSGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP--EEELEEALERLA 349 (350)
T ss_pred HHHHHhcCCccccCCCccEEEEEecCCCChHHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC--HHHHHHHHHHhh
Confidence 999999863332222222233445443 566777777889987653 357899999988 999999999986
Q ss_pred C
Q 001989 529 G 529 (985)
Q Consensus 529 ~ 529 (985)
+
T Consensus 350 ~ 350 (350)
T cd00609 350 E 350 (350)
T ss_pred C
Confidence 3
No 192
>PRK07482 hypothetical protein; Provisional
Probab=99.73 E-value=7.7e-16 Score=181.02 Aligned_cols=344 Identities=13% Similarity=0.154 Sum_probs=207.3
Q ss_pred cccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHH
Q 001989 591 MIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air 669 (985)
...||++++.+..+...+......+..+.-+. .+...++.+.|++++..+ ...++.+||++|++++++.+|
T Consensus 61 ~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~--------~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr 132 (461)
T PRK07482 61 CVNVGYGRTEVAEAIAEQAKELAYYHTYVGHG--------TEASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVW 132 (461)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCccccccccC--------CHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHH
Confidence 34688888877776555542222121110010 123457788888887432 234678999999999999999
Q ss_pred HHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCC--C----C-------CCCHHHHHHH
Q 001989 670 AYHKARGDHHRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDA--K----G-------NINIEELRKA 723 (985)
Q Consensus 670 ~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~--~----g-------~iD~e~L~~~ 723 (985)
.|...+|..++.+||. ..++||....+....| -.+..++... . + .-++++|++.
T Consensus 133 ~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (461)
T PRK07482 133 YYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEEL 212 (461)
T ss_pred HHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHH
Confidence 8764445434667776 6789997644322211 1122333211 0 0 0146788888
Q ss_pred HHh-cCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeC
Q 001989 724 AEA-NRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLN 790 (985)
Q Consensus 724 i~~-~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s 790 (985)
+.+ .++++++|+++-. ...|++.+ -+++|.++|+++|+++|+|+++ .|+++.|.+ -+|+++++
T Consensus 213 ~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~----tGfGRtG~~~a~~~~gv~PDiv~~g 288 (461)
T PRK07482 213 ILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVV----TGFGRLGSMFGSDHYGIEPDLITVA 288 (461)
T ss_pred HHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccc----cCCCcCcchhhHHhcCCCCCEEEEc
Confidence 853 2357888988743 34466642 3899999999999999999876 455555543 27999874
Q ss_pred CcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHH
Q 001989 791 LHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTE 870 (985)
Q Consensus 791 ~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~ 870 (985)
|.++ +|-..+|.+++++++.+.+.... . ........+++.|+++.++++.+.|..+..+++.+
T Consensus 289 --Kgl~----gG~~Pi~av~~~~~i~~~~~~~~--~---------~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~ 351 (461)
T PRK07482 289 --KGLT----SAYAPLSGSIVGEKVWDVLEQGS--D---------EHGAIGHGWTYSGHPICAAAALANLDILERENLVG 351 (461)
T ss_pred --cccc----cCccccceeeecHHHHHHHhccc--c---------cCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHH
Confidence 7763 33223455556766654332110 0 00000122356678888999999999887766544
Q ss_pred HHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCcccc-CCC-----CHHHHHHHHHHCCCccCCCCC
Q 001989 871 ASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGLKNT-AGI-----EPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 871 ~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~~~~-~g~-----~~~~v~~~L~~~Gi~~~~~~~ 939 (985)
+..++.++|.++|++. ..++ +.+. + .+ +-+.+..-... ... ....+.+.|.++|+++...
T Consensus 352 ---~~~~~g~~l~~~L~~l~~~~~~v~~vrG~-G-lm--~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~-- 422 (461)
T PRK07482 352 ---NAAEVGAYFRARLRAAFGDHPLVGEVRGV-G-ML--AAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAM-- 422 (461)
T ss_pred ---HHHHHHHHHHHHHHHHHhcCCCEEEEeec-e-eE--EEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecC--
Confidence 5567778888888642 2221 1121 1 22 22332100000 000 1356888899999987432
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 940 PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 940 p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
|..+.+|+.|+..+|++|||+ +++++++++.++
T Consensus 423 ~~~~~i~~~Ppl~it~~ei~~--~~~~l~~~l~~~ 455 (461)
T PRK07482 423 PHGDILGFAPPLVLTRAEADE--IVAIAKDAVDEV 455 (461)
T ss_pred CCCCEEEEeCCCCCCHHHHHH--HHHHHHHHHHHH
Confidence 124789999999999999999 788898888764
No 193
>PLN02822 serine palmitoyltransferase
Probab=99.73 E-value=5.3e-16 Score=183.33 Aligned_cols=280 Identities=12% Similarity=0.096 Sum_probs=185.1
Q ss_pred hhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCe
Q 001989 202 QAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDI 281 (985)
Q Consensus 202 q~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi 281 (985)
.|+..-|+.+.+.++++.+|+++|.+. ..++.+|.+++.+++.++ . +++|.|+++...|.++...++. .+.
T Consensus 145 g~r~~yg~~~~~~~Lee~La~~~~~~~--~i~~s~G~~a~~sai~a~--~-~~gd~Ii~d~~~H~s~~~~~~l----s~~ 215 (481)
T PLN02822 145 GPRGFYGTIDVHLDCETKIAKFLGTPD--SILYSYGLSTIFSVIPAF--C-KKGDIIVADEGVHWGIQNGLYL----SRS 215 (481)
T ss_pred ccCccccCHHHHHHHHHHHHHHhCCCC--EEEECCHHHHHHHHHHHh--C-CCCCEEEEeCCccHHHHHHHHH----cCC
Confidence 344556788899999999999999764 445555555566655554 2 4889999999999999877642 355
Q ss_pred EEEEeCc---hhhhc-c---C------CCE-eEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCC-
Q 001989 282 KVVVSDL---KDIDY-K---S------GDV-CGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPG- 345 (985)
Q Consensus 282 ~v~~v~~---~~l~~-l---~------~~t-~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~- 345 (985)
++++++. ++++. + . +++ ++|++..+ +.+|.+.|+++|.++|+++|+++++ ++.+++|++...+
T Consensus 216 ~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIv-DEa~s~gvlG~~G~ 294 (481)
T PLN02822 216 TIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLL-DESNSFGVLGKSGR 294 (481)
T ss_pred eEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEE-ECCccccccCCCCC
Confidence 6666643 33432 2 1 335 56666655 6799999999999999999999999 4667777664332
Q ss_pred ----cc-----cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccc
Q 001989 346 ----EL-----GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDK 415 (985)
Q Consensus 346 ----~~-----GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~ 415 (985)
.+ ..||++++. |+|+. .| ||+++++++++.+.. ...+|.+
T Consensus 295 G~~e~~~v~~~~~dii~~s~sKalg~---~G----G~i~g~~~ii~~~~~----------~~~~~~f------------- 344 (481)
T PLN02822 295 GLSEHFGVPIEKIDIITAAMGHALAT---EG----GFCTGSARVVDHQRL----------SSSGYVF------------- 344 (481)
T ss_pred ChHHHcCCCCCCCeEEEecchhhhhh---CC----eEEEcCHHHHHHHHh----------cCCceee-------------
Confidence 12 458999986 98863 22 788888887765410 0011111
Q ss_pred cCCCccchhHHHHHHHHH-HHHHhCcchHHHHHHHHHHHHHHHHHHHhcC-CCeEEcCCC--CcceEEEecC------C-
Q 001989 416 ATSNICTAQALLANMAAM-YAVYHGPEGLKTIAQRVHGLAGTFALGLKKL-GTVEVQGLP--FFDTVKVKCA------D- 484 (985)
Q Consensus 416 atsni~t~~~l~a~~aa~-~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~-g~~~~~~~~--~~~~~~~~~~------~- 484 (985)
+++.+.....|++ .+..+. ..+++.++..++.+++++.|+++ | +++...+ ++-.+.+... +
T Consensus 345 -----sa~lPp~~~~Aa~~aL~~l~--~~~~~~~~l~~~~~~l~~~L~~~~g-~~~~~~~~spi~~l~l~~~~~~~~~~~ 416 (481)
T PLN02822 345 -----SASLPPYLASAAITAIDVLE--DNPSVLAKLKENIALLHKGLSDIPG-LSIGSNTLSPIVFLHLEKSTGSAKEDL 416 (481)
T ss_pred -----ccccCHHHHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHhcCC-cccCCCCCCCEEEEEeCCCcccccchH
Confidence 1111111222222 122221 12567888999999999999987 5 7765322 2212333211 1
Q ss_pred --HHHHHHHHH-HcCceeeee---------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 485 --AHAIASAAY-KIEMNLRVV---------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 --~~~v~~~L~-~~GI~~~~~---------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+++++|. ++||.+... .+..+|++++..+|++||++++++|++
T Consensus 417 ~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~ 473 (481)
T PLN02822 417 SLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKR 473 (481)
T ss_pred HHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 367899987 789987532 124699999999999999999999974
No 194
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.73 E-value=6.1e-16 Score=180.08 Aligned_cols=332 Identities=15% Similarity=0.129 Sum_probs=204.2
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air~ 670 (985)
..||++++.+..+...+.............. +...++.+.+++++..+ ...++.+||++|++++++.+|.
T Consensus 56 ~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~---------~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~ 126 (429)
T PRK06173 56 ALHGYNHPRLNAAATNQLAKMSHIMFGGFTH---------EPAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQ 126 (429)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCccccccCC---------HHHHHHHHHHHhhCCCCcCEEEEeCCchHHHHHHHHHHHH
Confidence 4578887777665544432222111101111 12346778888887422 1346789999999999999998
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC--------c-----EEEEEcCCCC------CCCCHHHHHHHHHhcCCC
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCG--------M-----KIVSVGTDAK------GNINIEELRKAAEANRDN 730 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G--------~-----~vv~v~~d~~------g~iD~e~L~~~i~~~~~~ 730 (985)
|...+|..++.+||. ...+||....+....| + .+..+|.... ...+++.|++.+.++.++
T Consensus 127 ~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~~~~ 206 (429)
T PRK06173 127 YQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQKGDE 206 (429)
T ss_pred HHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHhCCCc
Confidence 865555334566765 6678996433322111 0 1233443110 012477788888755568
Q ss_pred EEEEEEEcC--CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCcccccc
Q 001989 731 LSTLMVTYP--STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLHKTFCI 797 (985)
Q Consensus 731 t~~Vvv~~p--n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~hK~l~~ 797 (985)
+++|+++-. ...|++.+ -+++|.++|+++|+++|+|++| .++ .+.|.+ .+|++++ .|.++
T Consensus 207 iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~-tG~---GrtG~~~a~~~~gv~PDiv~~--gK~l~- 279 (429)
T PRK06173 207 IAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIA-TGF---GRTGKLFALEHAGVVPDIMCI--GKALT- 279 (429)
T ss_pred EEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchh-cCC---CcCCcchHHHhcCCCCCEEEe--ehhhh-
Confidence 999998752 34465532 3899999999999999999988 333 333322 3688875 47763
Q ss_pred cCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 001989 798 PHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAI 876 (985)
Q Consensus 798 p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~ 876 (985)
|| .-++.+++++++.+.+..... + .. ...+++.|+++.++++.+.|+.+.++.+ .++..
T Consensus 280 ----gG~~p~~a~~~~~~i~~~~~~~~~----------~--~~-~~~~T~~g~p~~~aaa~a~l~~i~~~~~---~~~~~ 339 (429)
T PRK06173 280 ----GGYLTLSATITTEAIAQTICSGEA----------K--CF-MHGPTFMANPLACAIAAESIRLLLESPW---QQNIQ 339 (429)
T ss_pred ----CCccccceEEecHHHHHHHhcCCC----------C--cc-ccCCCCCcCHHHHHHHHHHHHHHHhCCH---HHHHH
Confidence 44 334555567666554421100 0 00 1112344577788888888888866544 44677
Q ss_pred HHHHHHHHHhhc--cCCeee--cCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCC
Q 001989 877 LNANYMAKRLEK--HYPILF--RGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTES 952 (985)
Q Consensus 877 ~~a~~l~~~L~~--g~~l~~--~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~ 952 (985)
++.++|+++|++ .+..+. .+. + .+ +.+.+.. ......+.+.|.++|+++... .+.||+.|+..
T Consensus 340 ~~g~~l~~~L~~~~~~~~v~~vRg~-G-l~--~~iel~~-----~~~~~~i~~~l~e~Gi~v~~~----g~~l~~~Ppl~ 406 (429)
T PRK06173 340 RIEAQLKQELAPAAEFDSVAEVRVL-G-AI--GVVEMKE-----PVNMATLQPRFVEHGIWVRPF----GKLVYIMPPFI 406 (429)
T ss_pred HHHHHHHHHHHHhhcCCCeeeeecc-c-eE--EEEEeCC-----cccHHHHHHHHHHCCeEEEec----CCEEEEeCCcc
Confidence 788889998874 233211 111 1 12 2233321 124578999999999988543 36999999999
Q ss_pred CCHHHHHHHHccCChhHHHHhh
Q 001989 953 ESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 953 ~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.|++|||+ ++++|++++...
T Consensus 407 it~~ei~~--~~~~l~~~l~~~ 426 (429)
T PRK06173 407 ISPDELSQ--LTSGLLRVLKQE 426 (429)
T ss_pred CCHHHHHH--HHHHHHHHHHHH
Confidence 99999999 889999888653
No 195
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=99.73 E-value=7.5e-16 Score=180.63 Aligned_cols=331 Identities=13% Similarity=0.106 Sum_probs=198.8
Q ss_pred cccccccccCCCcccccccccccccc-ccCCCCchhhhhhHHHHHHHHHHHHHHHhC-CCccceecCcHHHHHHHHHHHH
Q 001989 591 MIPLGSCTMKLNATTEMMPVTWPSFA-NIHPFAPADQAQGYQEMFNNLGEWLCTITG-FDSFSLQPNAGAAGEYAGLMVI 668 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~~~~~~f~-~~~p~~p~e~~~G~~~~~~e~~~~la~l~G-~~~~~~~~~sGa~a~~a~l~ai 668 (985)
...||++++.+..+...+........ +.+.. +...++.+.|+++++ .....++.+||++|++++++++
T Consensus 54 ~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~----------~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklA 123 (433)
T PRK08117 54 VANVGHRHPKVVQAIKEQADKLMHGPSGVIYY----------ESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLA 123 (433)
T ss_pred hccCCCCCHHHHHHHHHHHHhccCccccccCC----------HHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHH
Confidence 45688888777766555432211111 11111 234578889999883 2234567799999999999988
Q ss_pred HHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC--------c-----EEEEEcCCCCCC------------CCHHHHHH
Q 001989 669 RAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG--------M-----KIVSVGTDAKGN------------INIEELRK 722 (985)
Q Consensus 669 r~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G--------~-----~vv~v~~d~~g~------------iD~e~L~~ 722 (985)
|.|. ++++||. ...+||.........+ . .+..+|...... .|++++++
T Consensus 124 r~~t------gr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 197 (433)
T PRK08117 124 KHVT------KRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLES 197 (433)
T ss_pred HHhc------CCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHH
Confidence 8762 3455665 6789998766532211 0 123444321111 26777888
Q ss_pred HHHh--cCCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCCc------cC--CcEE
Q 001989 723 AAEA--NRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY------IG--ADVC 787 (985)
Q Consensus 723 ~i~~--~~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~~pg~------~g--~Di~ 787 (985)
.+++ .++++++|+++-. +..|.+. + +++|.++|+++|+++++|++|. + +.+.|. +| +|++
T Consensus 198 ~~~~~~~~~~~aavi~Epi~~~~G~~~-~~~~~l~~l~~lc~~~g~llI~DEv~t-G---~gr~G~~~~~~~~gv~pDi~ 272 (433)
T PRK08117 198 LFKHQVTPEEVAAVIIEPVLGEGGYIV-PPKSFLKKLREICDRHGILLIFDEVQT-G---FGRTGEWFAAQTFGVVPDIM 272 (433)
T ss_pred HHHhccCCCcEEEEEECCeeCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEecchh-c---cCccccchhHhhcCCCCCEe
Confidence 7763 2356888887653 4567775 5 9999999999999999999884 3 333331 22 5775
Q ss_pred EeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
++ .|.++ +|..+|.+++++++...+..... .+++.|+++.++++.+.|..+..++
T Consensus 273 t~--sK~lg-----~G~pigav~~~~~i~~~~~~~~~------------------~~T~~~np~~~aaa~a~L~~l~~~~ 327 (433)
T PRK08117 273 TI--AKGIA-----SGLPLSAVVASKELMEQWPLGSH------------------GTTFGGNPVACAAALATLEVIKEEK 327 (433)
T ss_pred eh--hhhcc-----CCCcceeEEEcHHHHhhccCCCC------------------CCCCCcCHHHHHHHHHHHHHHHhcc
Confidence 44 47774 33446677778776654421100 1123345666677778888775554
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc---CCeeecCCCCceeeEEEEEecCc-cccCCCCHHHHHHHHHHCCCccCCCCCCCCC
Q 001989 868 LTEASKIAILNANYMAKRLEKH---YPILFRGVNGTVAHEFIVDLRGL-KNTAGIEPEDVAKRLMDYGFHGPTMSWPVPG 943 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g---~~l~~~~~~~~~~~~~iv~~~~~-~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~ 943 (985)
+ .++..++.++++++|++. +.+....+....+ +-+.+..- +.........+.+.|.++|+.+..... ..+
T Consensus 328 l---~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~Gl~--~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~-~~~ 401 (433)
T PRK08117 328 L---LDNANEMGAYALERLEVLKEKHPVIGDVRGIGLM--IGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCGN-AGN 401 (433)
T ss_pred H---HHHHHHHHHHHHHHHHHHHhcCCceeeeecCCcE--EEEEEecCCCCcchHHHHHHHHHHHHCCCEEeecCC-CCC
Confidence 4 345566778888888652 2321111101122 12222100 000011245678889999998643321 147
Q ss_pred EEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 944 TLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 944 ~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+|++|+..+|++|||+ +++.|.+++.++.
T Consensus 402 ~lRl~p~~~~t~~~i~~--~~~~l~~~l~~~~ 431 (433)
T PRK08117 402 VLRMIPPLTVTKEEIDE--GLDILDEALTEYE 431 (433)
T ss_pred EEEEeCCccCCHHHHHH--HHHHHHHHHHHHh
Confidence 99999999999999999 8899999887664
No 196
>PRK06541 hypothetical protein; Provisional
Probab=99.73 E-value=7.1e-16 Score=181.12 Aligned_cols=341 Identities=16% Similarity=0.154 Sum_probs=204.4
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~ 670 (985)
..||++++.+..+...+......+.+. .+. .+...++.+.+++++..+. ..++.+||++|++++++.+|.
T Consensus 64 ~~lGh~~p~v~~Av~~q~~~~~~~~~~-~~~--------~~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~ 134 (460)
T PRK06541 64 VQVGHGRAELAEAAAKQAGTLAFFPLW-SYA--------HPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQ 134 (460)
T ss_pred ccCCCCCHHHHHHHHHHHhhCcCcccc-ccC--------CHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHH
Confidence 458888877776655554322222111 111 1223467778888874322 346789999999999999998
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCCC-----CCC--------HHHHHHHH
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAKG-----NIN--------IEELRKAA 724 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~g-----~iD--------~e~L~~~i 724 (985)
|....|..++.+||. ...+||....+....|. .+..+|.+... ..| ++++++.+
T Consensus 135 ~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 214 (460)
T PRK06541 135 YFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAI 214 (460)
T ss_pred HHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHH
Confidence 754344323566765 67899987655432211 13334432111 112 36788888
Q ss_pred Hhc-CCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeC
Q 001989 725 EAN-RDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLN 790 (985)
Q Consensus 725 ~~~-~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s 790 (985)
++. ++++++|+++-. +..|.+. + +++|.++|+++|+++|+|+++. ++++.|.+ .+|++++
T Consensus 215 ~~~~~~~~Aavi~EPv~g~~G~~~-~~~~yl~~l~~lc~~~g~llI~DEV~t----GfGR~G~~~a~~~~gv~PDivt~- 288 (460)
T PRK06541 215 EFEGPDTVAAVFLEPVQNAGGCFP-PPPGYFERVREICDRYDVLLVSDEVIC----AFGRLGEMFGCERFGYVPDIITC- 288 (460)
T ss_pred HhcCCCCEEEEEECCccCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEechhh----CCCcCchhhhhhhcCCCCCEEEe-
Confidence 642 345666666542 4567775 5 9999999999999999999872 22233322 3688875
Q ss_pred CcccccccCCCCCC-ceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHH
Q 001989 791 LHKTFCIPHGGGGP-GMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 791 ~hK~l~~p~g~GGP-g~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~ 869 (985)
.|.++ ||. .+|.+++++++...+.... . ... ..+++.|++..++++.+.|..+..+++.
T Consensus 289 -gK~l~-----~G~~pigav~~~~~i~~~~~~~~-~------------~~~-~~~T~~gnp~~~aaala~l~~l~~~~~~ 348 (460)
T PRK06541 289 -AKGIT-----SGYSPLGAMIASDRLFEPFLDGP-T------------MFL-HGYTFGGHPVSAAVALANLDIFEREGLL 348 (460)
T ss_pred -ccccc-----CCccceeEEEEcHHHHHHhhcCC-C------------ccc-cCCCCCCCHHHHHHHHHHHHHHHhccHH
Confidence 37763 343 3666667776654332110 0 000 1123455677777888888887766543
Q ss_pred HHHHHHHHHHHHHHHHhhcc--CCee--ecCCCCceeeEEEEEecC---ccccC-CCC-----HHHHHHHHHHCCCccCC
Q 001989 870 EASKIAILNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLRG---LKNTA-GIE-----PEDVAKRLMDYGFHGPT 936 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~g--~~l~--~~~~~~~~~~~~iv~~~~---~~~~~-g~~-----~~~v~~~L~~~Gi~~~~ 936 (985)
++..++.++|.++|++. ..++ ..+. +. + +.+.+.. .+... ... ...+.+.|.++|+++..
T Consensus 349 ---~~~~~~g~~l~~~L~~l~~~~~v~~vrg~-Gl-~--~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~ 421 (460)
T PRK06541 349 ---DHVRDNEPAFRATLEKLLDLPIVGDVRGD-GY-F--YGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRA 421 (460)
T ss_pred ---HHHHHHHHHHHHHHHHhhcCCCeEEEEec-ce-E--EEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEe
Confidence 56778889999988762 2221 1121 22 2 2222210 00000 000 12567888999999854
Q ss_pred CCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccC
Q 001989 937 MSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 937 ~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~ 977 (985)
... -.+.||++|+..+|++|||+ ++++|++++.++.++
T Consensus 422 ~~~-g~~~lrl~Ppl~~t~~~id~--~~~~l~~~l~~~~~~ 459 (460)
T PRK06541 422 DDR-GDPVVQLAPPLISGQEEFDE--IEQILRSVLTEAWAR 459 (460)
T ss_pred cCC-CCCEEEEECCCCCCHHHHHH--HHHHHHHHHHHHHhc
Confidence 211 13689999999999999999 889999999887764
No 197
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=99.73 E-value=5.4e-16 Score=177.43 Aligned_cols=297 Identities=15% Similarity=0.125 Sum_probs=193.0
Q ss_pred CcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCC---
Q 001989 180 VPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKK--- 256 (985)
Q Consensus 180 ~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~--- 256 (985)
.|+.+.+++... ...|+ +.-+.+.++++.+|+++|.+ ++.+++|+|+++..+++++ .. +||
T Consensus 25 ~~~~v~~a~~~~---~~~~~--------~~~~~~~~~~~~~a~~~g~~--~~~~~~g~t~al~~al~al-~~--~Gd~~~ 88 (363)
T TIGR01437 25 VSDEVADAQKRG---AQNYF--------EIKELVNKTGEYIANLLGVE--DAVIVSSASAGIAQSVAAV-IT--RGNRYL 88 (363)
T ss_pred CCHHHHHHHHHH---HhcCC--------CHHHHHHHHHHHHHHhhCCC--eEEEEcCHHHHHHHHHHHH-hc--CCCcch
Confidence 677776555542 22232 22366788999999999987 4778999999888877765 22 566
Q ss_pred ------------EEEEcCCCChhHHHHHHHhhcCCCeEEEEeC------chhhhc-cCCCEeEEE-EEc-CCCCeeeccH
Q 001989 257 ------------TFIIASNCHPQTIDICITRADGFDIKVVVSD------LKDIDY-KSGDVCGVL-VQY-PGTEGEVLDY 315 (985)
Q Consensus 257 ------------~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~------~~~l~~-l~~~t~~V~-v~~-pn~~G~v~di 315 (985)
+||++...+..+...+.......|.++++++ ++++++ ++++|++++ +++ +|++|.+.|+
T Consensus 89 ~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~~~~d~~~le~ai~~~t~ai~~v~~~~~~~g~~~~~ 168 (363)
T TIGR01437 89 VENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYANECSAEQLEAAITEKTAAILYIKSHHCVQKSMLSV 168 (363)
T ss_pred hhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCCCCCCHHHHHHhcChhceEEEEEecCCCCcCCcCCH
Confidence 7777763333332122222334688888764 467777 889999776 555 4889999999
Q ss_pred HHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecC
Q 001989 316 GDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDS 394 (985)
Q Consensus 316 ~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~ 394 (985)
++|+++||++|+++++|+ ..+.. +....++|+|++++|+ |+|+ ||-.|+++.++++++.+.....|
T Consensus 169 ~~i~~~a~~~gi~vivD~-a~~~~-~~~~~~~g~D~~~~S~~K~l~------gp~~G~l~~~~~~i~~~~~~~~~----- 235 (363)
T TIGR01437 169 EDAAQVAQEHNLPLIVDA-AAEED-LQKYYRLGADLVIYSGAKAIE------GPTSGLVLGKKKYIEWVKLQSKG----- 235 (363)
T ss_pred HHHHHHHHHcCCeEEEEC-CCCCc-hHHHHHcCCCEEEEeCCcccC------CCceEEEEEcHHHHHHHHhccCC-----
Confidence 999999999999999953 22321 1223468999999998 6564 44568888888777665321111
Q ss_pred CCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC--C
Q 001989 395 SGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG--L 472 (985)
Q Consensus 395 ~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~--~ 472 (985)
..+. .+.+|. .+.++.+++ .++...|.+.+.++. +++.+++++|++++|+++.. +
T Consensus 236 -~~~~-------------~~~~~~------~~~gl~aAl--~~~~~~~~~~~~~~~-~~~~~l~~~L~~i~g~~~~~~~~ 292 (363)
T TIGR01437 236 -IGRA-------------MKVGKE------NILGLTAAL--EQYLSTGKESGAEMV-AKLTPFIEALNTLKGVSASIVQD 292 (363)
T ss_pred -Ccce-------------eccCHH------HHHHHHHHH--HHHHccCcccHHHHH-HHHHHHHHHHhcCCCeEEEEecC
Confidence 0010 112222 244555555 333334444444444 45668999999985588762 1
Q ss_pred -C--Cc--ceEEEecC--C--HHHHHHHHHHcC--ceeeee--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 473 -P--FF--DTVKVKCA--D--AHAIASAAYKIE--MNLRVV--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 473 -~--~~--~~~~~~~~--~--~~~v~~~L~~~G--I~~~~~--~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. .+ ..++|+.. + +.++.++|.++| |..+.. ..+.+++++.. ++++|+|+++++|.+
T Consensus 293 ~~~~~~~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~~~~~~~~~~l~~~~-~~~~e~~~~~~~l~~ 361 (363)
T TIGR01437 293 EAGRDIARAEIRFDESELGMTAADVVQALRQGEPAIYTRGYKANEGIIEIDPRS-VTGGQLDIIVERIRE 361 (363)
T ss_pred CCCCcCceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEeeeeecCCeEEEEeec-CCHHHHHHHHHHHHH
Confidence 1 11 23555542 3 899999999877 555542 46889999986 559999999999974
No 198
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=99.73 E-value=1.9e-16 Score=181.49 Aligned_cols=283 Identities=14% Similarity=0.156 Sum_probs=180.8
Q ss_pred HHHHHHHHHHhCCCccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++.+++++|.+...+.. ++|+++. ...+++.+. +++++|+++++.+..+...++..|++++.+|.++++
T Consensus 72 ~~lr~~ia~~~~~~~~~i~~~~~Ga~~~--i~~~~~~~~-----~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 144 (361)
T PRK00950 72 PELREALSKYTGVPVENIIVGGDGMDEV--IDTLMRTFI-----DPGDEVIIPTPTFSYYEISAKAHGAKPVYAKREEDF 144 (361)
T ss_pred HHHHHHHHHHhCCCHHHEEEeCCCHHHH--HHHHHHHhc-----CCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCCC
Confidence 57888999999988765555 5565422 122233221 367889998876655555677889999999987777
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCC--CccCCcEEEeC
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP--GYIGADVCHLN 790 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~p--g~~g~Di~~~s 790 (985)
.+|++++++.++ +++++|++++|+ ++|.+. +.++|.++|+++|+++++|+++..-...-..+ ....--+++.|
T Consensus 145 ~~~~~~l~~~~~---~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S 220 (361)
T PRK00950 145 SLDVDSVLNAIT---EKTKVIFLCTPNNPTGNLI-PEEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRT 220 (361)
T ss_pred CcCHHHHHHHhc---cCCCEEEEeCCCCCCCCCc-CHHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEe
Confidence 899999999987 678889999984 799998 89999999999999999999984211110000 11112256678
Q ss_pred CcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHH
Q 001989 791 LHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTE 870 (985)
Q Consensus 791 ~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~ 870 (985)
++|.|+.| |.++|++++++++...+... + ...+++ .....++..++. ..+-+.+
T Consensus 221 ~SK~~g~~----GlRiG~~~~~~~~~~~~~~~------------~--~~~~~~------~~~~~~a~~~l~--~~~~~~~ 274 (361)
T PRK00950 221 FSKVFGLA----GLRIGYGFVPEWLIDYYMRA------------K--TPFSLT------RLSQAAAIAALS--DKEYIEK 274 (361)
T ss_pred ehHhhcCc----hhhcchhcCCHHHHHHHHHh------------c--CCCCCC------HHHHHHHHHHhc--CHHHHHH
Confidence 88988543 56799999887665433211 0 001111 111122223332 1222444
Q ss_pred HHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-CCC--CCCEEEE
Q 001989 871 ASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-SWP--VPGTLMI 947 (985)
Q Consensus 871 ~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~p--~~~~lri 947 (985)
..++..++++++.+.|. +.+ . ++ +..+ +.++++ +.+..+++++|.++||.+... .++ .++++|+
T Consensus 275 ~~~~~~~~r~~l~~~l~--~~~-~-~~-~~~~--i~~~~~------~~~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRi 341 (361)
T PRK00950 275 SIEHGIKSREYLYNELP--FKV-Y-PS-EANF--VLVDVT------PMTAKEFCEELLKRGVIVRDCTSFRGLGDYYIRV 341 (361)
T ss_pred HHHHHHHHHHHHHhhcC--eeE-C-CC-cceE--EEEECC------CCCHHHHHHHHHHCCEEEeeCCccCCCCCCeEEE
Confidence 44445555566666654 222 1 22 2222 334443 457889999999999987542 233 2468999
Q ss_pred eccCCCCHHHHHHHHccCChhHHHH
Q 001989 948 EPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 948 s~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
++. +.+|+++ ++++|+++++
T Consensus 342 s~~---~~~~~~~--l~~~L~~il~ 361 (361)
T PRK00950 342 SIG---TFEENER--FLEILKEIVE 361 (361)
T ss_pred ECC---CHHHHHH--HHHHHHHHhC
Confidence 985 8889999 7788877653
No 199
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=99.73 E-value=2.1e-16 Score=179.41 Aligned_cols=299 Identities=9% Similarity=0.010 Sum_probs=186.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCc---cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCC-CCccc-HHHHHHCCcE
Q 001989 629 GYQEMFNNLGEWLCTITGFDS---FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVS-AHGTN-PATAAMCGMK 703 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~---~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~-~Hg~~-~~~a~~~G~~ 703 (985)
-+.++++++++.++++++.+. +.++.+||+.|+++++..+. .+++++++... .+|.. ...++..|+
T Consensus 34 ~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~--------~~~~~~l~i~~G~fg~r~~~~a~~~g~- 104 (349)
T TIGR01364 34 EFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLL--------AEGKVADYIVTGAWSKKAAKEAKKYGV- 104 (349)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcC--------CCCCeEEEEECCHHHHHHHHHHHHhCC-
Confidence 345778899999999999743 34566778888877665432 24566655322 22211 223667888
Q ss_pred EEEEcCCC----CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCC
Q 001989 704 IVSVGTDA----KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS 778 (985)
Q Consensus 704 vv~v~~d~----~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~ 778 (985)
++.+..++ .-.+|+++++ ++ +++++|.+++. +.+|+.. + ++++.+|++++||++++++...+ +
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~v~~th~ETstGv~~-~-----~l~~~~~~l~iVDavss~g~~~i-d 172 (349)
T TIGR01364 105 VNVVASGKEGNYTKIPDPSTWE--IS---EDAAYVHYCANETIHGVEF-R-----ELPDVKNAPLVADMSSNILSRPI-D 172 (349)
T ss_pred cEEEeccccCCCCCCCCHHhcC--CC---CCCCEEEEcCCCCcccEec-c-----eecccCCCeEEEEccccccCccC-C
Confidence 77776542 2346666655 23 57888888885 5699987 4 56677899999999997554433 3
Q ss_pred CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCC---CCCCCCCCCCCCCcchhhhHHHHH
Q 001989 779 PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIP---APEKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 779 pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~---~~~~~~~~~~i~s~~~g~~~~~~~ 855 (985)
..+ .|++++++||+|+ .||+|++++++++++.+.+.... ..+.. ......+|+++ ..+.+
T Consensus 173 ~~~--~d~~~~ssqK~lg------P~Glg~l~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Tp~~--------~~i~a 235 (349)
T TIGR01364 173 VSK--FGLIYAGAQKNIG------PAGLTVVIVRKDLLGRASRITPS-MLNYKIHAENDSMYNTPPT--------FAIYV 235 (349)
T ss_pred HHH--ccEEEEecccccC------CCceEEEEECHHHHhhcccCCCC-cchHHHHHhcCCCCCCCcH--------HHHHH
Confidence 334 4699999999883 46899999998877655332110 00100 00000112222 11222
Q ss_pred HHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHhhccCCe--eecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 856 SYTYIAMMGSK-GLTEASKIAILNANYMAKRLEKHYPI--LFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 856 a~a~l~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~g~~l--~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
..++|+.+..+ |++++.++...++++++++|++..++ ....+.......+.+.+++ .+. ..++.+.+.++|+
T Consensus 236 l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~----~~~-~~~~~~~~~~~Gi 310 (349)
T TIGR01364 236 SGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGN----EEL-EKRFLKEAEERGL 310 (349)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCC----hhH-hHHHHHHHHHCCC
Confidence 23556666677 68999999999999999999873223 1111111111123344331 011 2566677888999
Q ss_pred ccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 933 HGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 933 ~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
++..... ..+.+|+|+..++|+||||+ +++.|+++.++
T Consensus 311 ~~~~~~~-~~g~vRvS~~~~nt~edid~--l~~al~~~~~~ 348 (349)
T TIGR01364 311 VSLKGHR-SVGGMRASIYNAMPLEGVQA--LVDFMKEFQKK 348 (349)
T ss_pred cccCCcc-ccCeeEEECcCCCCHHHHHH--HHHHHHHHHHh
Confidence 6543321 23799999999999999999 77888886653
No 200
>PRK08064 cystathionine beta-lyase; Provisional
Probab=99.72 E-value=6.7e-16 Score=178.19 Aligned_cols=276 Identities=16% Similarity=0.130 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch-
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK- 289 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~- 289 (985)
....++++.+|++.|.+. ..++.+|++++.+++.. + ++||+||+++..|+++...+...++..|++++++|.+
T Consensus 54 p~~~~le~~lA~l~g~~~--~v~~~sG~~ai~~~l~~--l--~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d 127 (390)
T PRK08064 54 PTREALEDIIAELEGGTK--GFAFASGMAAISTAFLL--L--SKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMTN 127 (390)
T ss_pred hhHHHHHHHHHHHhCCCC--eEEECCHHHHHHHHHHH--h--CCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECCCC
Confidence 344567899999999874 45667888777655532 2 3899999999999988888877677789999998764
Q ss_pred --hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCC
Q 001989 290 --DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMG 364 (985)
Q Consensus 290 --~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~ 364 (985)
++++ ++++|++|++++| |++|.+.|+++|.++||++|++++||. .++.+....|.++|+|+++.|+ |.+++|.+
T Consensus 128 ~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~-a~~~~~~~~~~~~g~Divv~S~tK~~~G~~~ 206 (390)
T PRK08064 128 LEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDN-TFLTPLLQKPLDLGADVVLHSATKFLAGHSD 206 (390)
T ss_pred HHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEEC-CCCcccccCchhhCCcEEEeecceeccCCcc
Confidence 4555 7889999999998 789999999999999999999999953 3444544556689999999998 77664422
Q ss_pred CCCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchH
Q 001989 365 YGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGL 443 (985)
Q Consensus 365 ~GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl 443 (985)
--+|+++++ +++.+++.... ...| ++. .+. -+ |+...|-+-+
T Consensus 207 ---~laG~~v~~~~~~~~~l~~~~-------------------------~~~g---~~~-~~~---~a--~l~~~gl~tl 249 (390)
T PRK08064 207 ---VLAGLAVVKDEELAQKLYFLQ-------------------------NSFG---AVL-GVQ---DC--WLVLRGLKTL 249 (390)
T ss_pred ---ceeEEEEeCCHHHHHHHHHHH-------------------------HhcC---CCC-CHH---HH--HHHHcccCcH
Confidence 124777775 35554441100 0001 100 111 11 1233444456
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeE-EcCC-----C-----------CcceEEEecCCHHHHHHHHHHcCce-----ee-
Q 001989 444 KTIAQRVHGLAGTFALGLKKLGTVE-VQGL-----P-----------FFDTVKVKCADAHAIASAAYKIEMN-----LR- 500 (985)
Q Consensus 444 ~~i~~~~~~~a~~l~~~L~~~g~~~-~~~~-----~-----------~~~~~~~~~~~~~~v~~~L~~~GI~-----~~- 500 (985)
....++..+++..+.+.|++.+.+. ++-+ | +...|+|.+.+.+++.+.+...++. ++
T Consensus 250 ~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~f~~~l~l~~~~~s~G~ 329 (390)
T PRK08064 250 HVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQSEEAVRQFVSHVKLPVFAVSLGA 329 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCCcceEcccCCC
Confidence 6777888899999999999875332 2211 1 1124777776544555555555552 11
Q ss_pred -----------------e-------ecCCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001989 501 -----------------V-------VDSNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 501 -----------------~-------~~~~~lris~t~~~t~edId~li~aL~~~ 530 (985)
. +.++.+|+|++..++++.|+.|.++|...
T Consensus 330 ~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~~ 383 (390)
T PRK08064 330 VESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSYV 383 (390)
T ss_pred CcceeECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhc
Confidence 0 12468999999999999999999999864
No 201
>PRK06767 methionine gamma-lyase; Provisional
Probab=99.72 E-value=8e-16 Score=177.52 Aligned_cols=273 Identities=20% Similarity=0.147 Sum_probs=186.9
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|+++|.+. +.++.+|++++.++++++ . ++||+||++...|+.....+...++..|+++.+++. ++
T Consensus 64 ~~Le~~lA~l~G~~~--al~~~sG~~Ai~~~l~al-~--~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~~d~~~ 138 (386)
T PRK06767 64 KLFEERMAVLEGGEE--ALAFGSGMAAISATLIGF-L--KAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDMETEAD 138 (386)
T ss_pred HHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHH-h--CCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCCCCHHH
Confidence 457789999999764 667788888777766655 2 389999999999999888887766678898888764 45
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++.+| |++|.+.|+++|.++||++|++++|| +.++.+....|.++|+|+++.|. |.|+++ |+
T Consensus 139 l~~~i~~~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD-~a~a~~~~~~pl~~g~Div~~S~sK~l~g~---g~ 214 (386)
T PRK06767 139 IENKIRPNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVD-NTFCSPYLQRPLELGCDAVVHSATKYIGGH---GD 214 (386)
T ss_pred HHHhhCcCceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEE-CCCcccccCCchhcCCcEEEecCcceecCC---CC
Confidence 665 7788999999998 78999999999999999999999995 34555555566788999999998 877532 33
Q ss_pred CcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHH
Q 001989 368 PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIA 447 (985)
Q Consensus 368 P~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~ 447 (985)
+-+|+++++++++.++-. ..++.-|+. .+++ .+. +...+-+-+..+.
T Consensus 215 ~~gG~v~~~~~~i~~~~~------------------------~~~~~~g~~----~~~~---~a~--l~~~~L~tl~~r~ 261 (386)
T PRK06767 215 VVAGVTICKTRALAEKIR------------------------PMRKDIGGI----MAPF---DAW--LLLRGLKTLAVRM 261 (386)
T ss_pred ceeEEEEeChHHHHHHHH------------------------HHHHHhCCC----CCHH---HHH--HHHcCCCcHHHHH
Confidence 446899988876544200 000111110 0122 122 2334444566677
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEcC-C----------CCcceEEEecCC----HHHHHHHHHHcCceeee-----------
Q 001989 448 QRVHGLAGTFALGLKKLGTVEVQG-L----------PFFDTVKVKCAD----AHAIASAAYKIEMNLRV----------- 501 (985)
Q Consensus 448 ~~~~~~a~~l~~~L~~~g~~~~~~-~----------~~~~~~~~~~~~----~~~v~~~L~~~GI~~~~----------- 501 (985)
++..+++.++++.|+++.+++.+. + .....|+|..++ +.++.++|...++.++.
T Consensus 262 ~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~ 341 (386)
T PRK06767 262 DRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKGGKEETQAFINDLHFITIAVSLGDTETLIQHPA 341 (386)
T ss_pred HHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhCCccEEecCCCCcCccccCCC
Confidence 888999999999999985476432 1 112346776653 56777777665543210
Q ss_pred ----------------ecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 502 ----------------VDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 502 ----------------~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
+.++.+|+|++.-+.++=|+.|-++|.
T Consensus 342 ~~~~~~~~~~~~~~~gi~~~l~R~svGlE~~~dl~~dl~~al~ 384 (386)
T PRK06767 342 TMTHAAIPAELRQEMGIYDNLIRLSVGLESWEDIVSDLEQALK 384 (386)
T ss_pred ccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHh
Confidence 113578999887654444455555553
No 202
>PRK12403 putative aminotransferase; Provisional
Probab=99.72 E-value=1.6e-15 Score=178.26 Aligned_cols=338 Identities=15% Similarity=0.163 Sum_probs=200.1
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air~ 670 (985)
..||++++.+..+...+.........+.. +..+...++.+.|+++++.+ ...++.+||++|++++++++|.
T Consensus 66 ~~lGh~hp~v~~A~~~q~~~~~~~~~~~~--------~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~ 137 (460)
T PRK12403 66 TNLGYGRKDLAAAAARQMEQLPYYNMFFH--------TTHPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRR 137 (460)
T ss_pred hcCCCCCHHHHHHHHHHHHhCCCeecccc--------cCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHH
Confidence 35888877776665554422222111111 11233557889999998743 2357789999999999999998
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCcE-----------EEEEcCCCCC----C--------CCHHHHHHHHH-
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCGMK-----------IVSVGTDAKG----N--------INIEELRKAAE- 725 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~~-----------vv~v~~d~~g----~--------iD~e~L~~~i~- 725 (985)
|....|..++.+|+. ...+||.........|.+ +..+|...-. . .++++|++.+.
T Consensus 138 ~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~ 217 (460)
T PRK12403 138 YWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILE 217 (460)
T ss_pred HHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHH
Confidence 854444222344444 567899765554433321 3334321100 0 11356766664
Q ss_pred hcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCcc
Q 001989 726 ANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLHK 793 (985)
Q Consensus 726 ~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~hK 793 (985)
..++++++|+++.. +..|++.++ +++|.++|+++|+++|+|+++ +++++.|.+ -+|++++ .|
T Consensus 218 ~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~----tGfGRtG~~~a~e~~gv~PDiv~~--gK 291 (460)
T PRK12403 218 LGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVI----GGFGRTGEWFAHEHFGFEPDTLSI--AK 291 (460)
T ss_pred hCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc----cCCCcCchhhhhhhcCCCCCeEEE--cc
Confidence 23356888888653 346777622 999999999999999999887 445455433 2699875 37
Q ss_pred cccccCCCC-CCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHH
Q 001989 794 TFCIPHGGG-GPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEAS 872 (985)
Q Consensus 794 ~l~~p~g~G-GPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~ 872 (985)
.++ +| .|-.|++ +++++.+.+... + + . ....+++.|+++.++++.+.|+.+..+++.
T Consensus 292 ~lg----gG~~Piga~v-~~~~i~~~~~~~--~---------~--~-~~~~~T~~gnPl~~Aaala~L~~i~~~~l~--- 349 (460)
T PRK12403 292 GLT----SGYVPMGGLV-LSKRIAEALVEQ--G---------G--V-FAHGLTYSGHPVAAAVAIANLKALRDEGVV--- 349 (460)
T ss_pred ccc----ccccceEEEE-ECHHHHHHHhcC--C---------C--c-cccCCCCCCCHHHHHHHHHHHHHHHhccHH---
Confidence 764 33 2655555 676665544211 0 0 0 001234556788888888999988776543
Q ss_pred HHHH-HHHHHHHHHhhc---cCCee--ecCCCCceeeEEEEEecC--ccccCCCC----HHHHHHHHHHCCCccCCCCCC
Q 001989 873 KIAI-LNANYMAKRLEK---HYPIL--FRGVNGTVAHEFIVDLRG--LKNTAGIE----PEDVAKRLMDYGFHGPTMSWP 940 (985)
Q Consensus 873 ~~~~-~~a~~l~~~L~~---g~~l~--~~~~~~~~~~~~iv~~~~--~~~~~g~~----~~~v~~~L~~~Gi~~~~~~~p 940 (985)
++.. ++.++|++.|++ .++++ +.+. + .+. .+.+.. ..+..... ...+.+.+.++|+.+...
T Consensus 350 ~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~-G-l~~--gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~--- 422 (460)
T PRK12403 350 TRVKDDTGPYLQRCLREVFGDHPLVGEVQGA-G-LVA--ALQFAEDKATRKRFANENDLAWRCRTIGFEEGVIIRST--- 422 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEeEeec-c-eEE--EEEEccCccccccccchhHHHHHHHHHHHhCCEEEEec---
Confidence 3453 667788877764 23321 1121 1 221 222210 00000001 223455668899987532
Q ss_pred CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 941 VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 941 ~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+.++++|+...|++|||+ ++++++++++++.
T Consensus 423 -~~~~~l~Ppl~it~~eid~--~~~~l~~al~~~~ 454 (460)
T PRK12403 423 -LGRMIMAPALVAGRAEIDE--LVDKTRIAVDRTA 454 (460)
T ss_pred -CCEEEEECCCCCCHHHHHH--HHHHHHHHHHHHH
Confidence 2579999999999999999 8899999998763
No 203
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=99.72 E-value=7.4e-16 Score=179.17 Aligned_cols=329 Identities=12% Similarity=0.116 Sum_probs=201.0
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air~ 670 (985)
..||++++.+..+...+.............. +...++.+.|+++++.+ ...++.+||++|++++++.+|.
T Consensus 55 ~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~---------~~~~~la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~ 125 (428)
T PRK07986 55 AIHGYNHPQLNAAMKSQIDAMSHVMFGGITH---------PPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQ 125 (428)
T ss_pred hcCCCCCHHHHHHHHHHHhhcCCccccccCC---------HHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHH
Confidence 4678887766655544432211111000011 22346778888887532 2357789999999999999998
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC-------------cEEEEEcCCCC------CCCCHHHHHHHHHhcCCC
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCG-------------MKIVSVGTDAK------GNINIEELRKAAEANRDN 730 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G-------------~~vv~v~~d~~------g~iD~e~L~~~i~~~~~~ 730 (985)
|...+| .++.+||. ...+||....+....+ -.+..+|.... ...|++++++.++++.++
T Consensus 126 ~~~~~g-~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~ 204 (428)
T PRK07986 126 YWQAKG-EPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHE 204 (428)
T ss_pred HHHhcC-CCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCCCc
Confidence 765444 24566775 6789997644432211 01223332110 124678889888755567
Q ss_pred EEEEEEEcC-C-Ccccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCcccccc
Q 001989 731 LSTLMVTYP-S-THGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLHKTFCI 797 (985)
Q Consensus 731 t~~Vvv~~p-n-~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~hK~l~~ 797 (985)
+++|+++.. . ..|++.+ .+++|.++|+++|+++|+|++| .++ ++.|.+ .+|++++ .|.+
T Consensus 205 iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~-tG~---GrtG~~fa~~~~gv~PDi~t~--gK~l-- 276 (428)
T PRK07986 205 IAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIA-TGF---GRTGKLFACEHAGIAPDILCL--GKAL-- 276 (428)
T ss_pred EEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cCC---ccCCCeeeecccCCCCCEEEe--chhh--
Confidence 888888752 3 3454431 3899999999999999999987 233 334322 2688865 3766
Q ss_pred cCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 001989 798 PHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAI 876 (985)
Q Consensus 798 p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~ 876 (985)
+ || --+|.+++++++.+.+.....+ . ....+++.|+++.++++.+.|+.+.++++ .++..
T Consensus 277 --~-gG~~p~~av~~~~~i~~~~~~~~~~------------~-~~~~~T~~g~p~~~aaa~a~L~~i~~~~~---~~~~~ 337 (428)
T PRK07986 277 --T-GGTMTLSATLTTREVAETISNGEAG------------C-FMHGPTFMGNPLACAVANASLSLLESGDW---QQQVA 337 (428)
T ss_pred --h-CCcccCcchhchHHHHHHhhcCCCC------------c-cccCCCCCcCHHHHHHHHHHHHHHHhCCH---HHHHH
Confidence 3 34 2244555676666554321000 0 00112345677888888888988876654 45667
Q ss_pred HHHHHHHHHhhcc--CCee--ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCC
Q 001989 877 LNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTES 952 (985)
Q Consensus 877 ~~a~~l~~~L~~g--~~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~ 952 (985)
++.++|++.|++. +..+ +.+. ..+ ..+.+.. ......+.+.|.++|+++... .+.+|++|+..
T Consensus 338 ~~g~~l~~~l~~l~~~~~i~~vRg~--Gl~--~~ve~~~-----~~~~~~~~~~l~~~Gl~~~~~----g~~i~~~Ppl~ 404 (428)
T PRK07986 338 AIEAQLREELAPLRDAPMVADVRVL--GAI--GVVETTR-----PVNMAALQRFFVEQGVWIRPF----GKLIYLMPPYI 404 (428)
T ss_pred HHHHHHHHHHHHHhcCCCEEeEecc--ceE--EEEEeCC-----cccHHHHHHHHHHCCcEEEec----CCEEEEeCCCC
Confidence 7788888888752 2211 1111 122 2233321 124568899999999987533 36899999999
Q ss_pred CCHHHHHHHHccCChhHHHH
Q 001989 953 ESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 953 ~t~eeId~~~~~~~l~~~~~ 972 (985)
.|++|||+ ++++|.++++
T Consensus 405 it~~ei~~--~~~~l~~~l~ 422 (428)
T PRK07986 405 ILPEQLQR--LTAAVNRAVQ 422 (428)
T ss_pred CCHHHHHH--HHHHHHHHHh
Confidence 99999999 7788888874
No 204
>PRK05965 hypothetical protein; Provisional
Probab=99.72 E-value=1.5e-15 Score=178.53 Aligned_cols=343 Identities=15% Similarity=0.146 Sum_probs=207.4
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~ 670 (985)
..+|++++.+..+...+..........+.+.. +...++.+.|++++..+. ..++.+||++|++++++.+|.
T Consensus 58 ~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~--------~~~~~lae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~ 129 (459)
T PRK05965 58 VNVGYGQESIVEAAAEQMRELPYATGYFHFGS--------EPAIRLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRH 129 (459)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCcccccccCC--------HHHHHHHHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHH
Confidence 46788877777665554422111111111111 223467788888874222 346678999999999999998
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHC---------C---cEEEEEcCCCC----CCCC--------HHHHHHHHH
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMC---------G---MKIVSVGTDAK----GNIN--------IEELRKAAE 725 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~---------G---~~vv~v~~d~~----g~iD--------~e~L~~~i~ 725 (985)
|...+|..++.+||. ..++||....+.... | -.+..+|.... ...| ++++++.++
T Consensus 130 ~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 209 (459)
T PRK05965 130 YWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVA 209 (459)
T ss_pred HHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHH
Confidence 865555334567775 678999764432211 1 01233432110 1123 367888886
Q ss_pred hcC-CCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCc
Q 001989 726 ANR-DNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLH 792 (985)
Q Consensus 726 ~~~-~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~h 792 (985)
++. +++++|+++-. ...|++.+ -+++|.++|+++|+++|+|+++ .|+.+.|.+ -+|+++++
T Consensus 210 ~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~----tGfGRtG~~~a~~~~gv~PDiv~~g-- 283 (459)
T PRK05965 210 ELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVI----TGFGRTGPLFACEAEGVVPDLMTVA-- 283 (459)
T ss_pred hcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechh----ccCccCchhhhHhhcCCCCCeEEec--
Confidence 543 57889988753 34566542 3899999999999999999876 455555543 27999874
Q ss_pred ccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHH
Q 001989 793 KTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEA 871 (985)
Q Consensus 793 K~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~ 871 (985)
|.++ +|- | +|.+++++++.+.+.... . . .......+++.|+++.++++.+.|..+.++++.
T Consensus 284 Kgl~----gG~~P-i~av~~~~~i~~~~~~~~--~--------~-~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l~-- 345 (459)
T PRK05965 284 KGLT----SGYVP-MGAVLMSDHVYQGIADGA--G--------A-AAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLL-- 345 (459)
T ss_pred hhhc----cCCcc-eeEEEEcHHHHHHHhccc--c--------c-cccccccCCCCCCHHHHHHHHHHHHHHHhccHH--
Confidence 7763 331 5 566667877665432110 0 0 000012235667888888899999988776554
Q ss_pred HHHHHHHHHHHHHHhhcc--CCee--ecCCCCceeeEEEEEecC---ccccCCC---CHHHHHHHHHHCCCccCCCCCCC
Q 001989 872 SKIAILNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLRG---LKNTAGI---EPEDVAKRLMDYGFHGPTMSWPV 941 (985)
Q Consensus 872 ~~~~~~~a~~l~~~L~~g--~~l~--~~~~~~~~~~~~iv~~~~---~~~~~g~---~~~~v~~~L~~~Gi~~~~~~~p~ 941 (985)
++..+..++|.++|++. ..++ +.+. + .+. .+.+.. .+..... -...+.+.+.++|+++....
T Consensus 346 -~~~~~~g~~l~~~l~~l~~~~~v~~vrG~-G-l~~--gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~g--- 417 (459)
T PRK05965 346 -ANGQKAGPRFAAGLDALRAHPLVGDVRGR-G-LLG--ALELVADKATKTPFDAALDPADRIFDRAYANGLVFRAFG--- 417 (459)
T ss_pred -HHHHHHHHHHHHHHHhhccCCCEEEEeec-c-eEE--EEEEeccccccCCCCchhHHHHHHHHHHHhCCeEEEecC---
Confidence 35667788888888652 2211 1111 1 121 222210 0000000 13467778889999885432
Q ss_pred CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 942 PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 942 ~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.+.||++|+...|++|||+ +++++.+++.++.+
T Consensus 418 ~~~i~~~PpL~it~~ei~~--~~~~l~~~l~~~~~ 450 (459)
T PRK05965 418 DGVLGFAPALCCTEGEFDL--IFERTRKTLDDVLA 450 (459)
T ss_pred CcEEEEECCCcCCHHHHHH--HHHHHHHHHHHHhc
Confidence 3679999999999999999 88999999887644
No 205
>PRK07682 hypothetical protein; Validated
Probab=99.72 E-value=5.2e-16 Score=179.05 Aligned_cols=302 Identities=12% Similarity=0.117 Sum_probs=193.5
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--cc-ceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--SF-SLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~~-~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+.+.+++.+.+|.+ .. .+.. +++++|...++ +.+. +++++|+++++.|+.+...++..|.+
T Consensus 57 ~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~---~~l~-----~~gd~vl~~~p~y~~~~~~~~~~g~~ 128 (378)
T PRK07682 57 AGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAM---RAII-----NPGDEVLIVEPSFVSYAPLVTLAGGV 128 (378)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHH---HHhC-----CCCCEEEEeCCCchhhHHHHHHcCCE
Confidence 577777777777777766653 22 3444 44455554333 3321 47789999988777777778889999
Q ss_pred EEEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC-C
Q 001989 704 IVSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG-L 776 (985)
Q Consensus 704 vv~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~-l 776 (985)
++.++.+. ++.+|+++|++++. +++++|++++| |++|.+. .++++|.++|+++|+++++|.++.... .+ .
T Consensus 129 ~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~ 205 (378)
T PRK07682 129 PVPVATTLENEFKVQPAQIEAAIT---AKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAY 205 (378)
T ss_pred EEEeecCCccCCCCCHHHHHhhcC---cccEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCC
Confidence 99998753 46899999999987 68899999999 5799885 258999999999999999999874211 00 0
Q ss_pred C----CCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 777 T----SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 777 ~----~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
. .++...-.+++.|++|+|++| |.++|++++++++.+.+.... .....+.+ ...
T Consensus 206 ~~~~~~~~~~~~~i~~~S~SK~~~~~----GlR~G~~~~~~~~i~~l~~~~--------------~~~~~~~~----~~~ 263 (378)
T PRK07682 206 TSFASIKGMRERTILISGFSKGFAMT----GWRLGFIAAPVYFSEAMLKIH--------------QYSMMCAP----TMA 263 (378)
T ss_pred CChhhcccccCCEEEEecCcccccCh----hhhhhhhhcCHHHHHHHHHHH--------------HhhccCCC----HHH
Confidence 0 011112357788889998654 567999999877665442110 00011111 111
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HC
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DY 930 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~ 930 (985)
..++..+|. -+.+.+++..+...++++++.+.|++ ++++ ..+.+.++ +.+.++. .+.+..++++.|. ++
T Consensus 264 q~a~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~--~~p~g~~~--~~~~~~~----~~~~~~~~~~~ll~~~ 334 (378)
T PRK07682 264 QFAALEALR-AGNDDVIRMRDSYRKRRNFFVTSFNEIGLTC--HVPGGAFY--AFPSISS----TGLSSEEFAEQLLLEE 334 (378)
T ss_pred HHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHHHCCCcc--CCCCeeEE--EEEeccC----CCCCHHHHHHHHHHhC
Confidence 122223332 23334555566677888899999987 4443 22223222 2233321 1356788998876 67
Q ss_pred CCccCCC-CCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 931 GFHGPTM-SWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 931 Gi~~~~~-~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
|+.+... .|. .++++||++.. +.+++++ .++.|++++++.|
T Consensus 335 gv~v~pg~~f~~~~~~~iRis~~~--~~~~l~~--~l~~l~~~l~~~~ 378 (378)
T PRK07682 335 KVAVVPGSVFGESGEGFIRCSYAT--SLEQLQE--AMKRMKRFVENKK 378 (378)
T ss_pred CEEEcCchhhCcCCCCeEEEEeCC--CHHHHHH--HHHHHHHHHhhcC
Confidence 9987532 222 25899999974 6899999 7788888877653
No 206
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=99.72 E-value=2.8e-16 Score=177.54 Aligned_cols=355 Identities=14% Similarity=0.131 Sum_probs=224.3
Q ss_pred CHHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC
Q 001989 569 TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD 648 (985)
Q Consensus 569 se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~ 648 (985)
-+.+..++|+.+++-= .+..|++.+.++.+...|....+.. +++.- .+ +...++.++|+++..-.
T Consensus 39 ~d~~G~r~lDg~sg~W------~~~~Gh~~~~i~~Ai~~Q~~~l~~~---~~~~~----t~--~Pa~~LA~~L~~~aP~~ 103 (449)
T COG0161 39 TDIDGRRYLDGMSGLW------CVNHGHGRPEIAEAIKKQLDKLPHV---MFGGF----TH--EPAIELAEKLAELAPEG 103 (449)
T ss_pred EeCCCCEEEecccHHH------HhhcCcCCHHHHHHHHHHHHhCCch---hhccc----CC--chHHHHHHHHHHhCCCC
Confidence 3344556666555421 2357999888888877776443322 11110 01 11347889999998722
Q ss_pred -c-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC-------------cEEEEEcCCC-
Q 001989 649 -S-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG-------------MKIVSVGTDA- 711 (985)
Q Consensus 649 -~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G-------------~~vv~v~~d~- 711 (985)
- ..|+.+|||+|++++++.++.|++.+|...+.++|. ...+||....+....| ..+..+|...
T Consensus 104 ~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~ 183 (449)
T COG0161 104 GLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYA 183 (449)
T ss_pred CccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcc
Confidence 2 247789999999999999999999998655666776 6789997654432222 1233444321
Q ss_pred -----CCC------CCHHHHHHHHHhcC-CCEEEEEEEcC-C-Ccccccc---CHHHHHHHHHHcCCEEEEEcccccccc
Q 001989 712 -----KGN------INIEELRKAAEANR-DNLSTLMVTYP-S-THGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQV 774 (985)
Q Consensus 712 -----~g~------iD~e~L~~~i~~~~-~~t~~Vvv~~p-n-~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~ 774 (985)
++. -..++|+++|.++. +++++++++-- . ..|++.+ -++++.++|++||+++|+|++ ..
T Consensus 184 y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV----~t 259 (449)
T COG0161 184 YRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEV----AT 259 (449)
T ss_pred cccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecc----ee
Confidence 111 23678888888776 56667766532 2 3666653 289999999999999999965 57
Q ss_pred CCCCCCccC--------CcEEEeCCcccccccCCCC-CCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCc
Q 001989 775 GLTSPGYIG--------ADVCHLNLHKTFCIPHGGG-GPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAA 845 (985)
Q Consensus 775 ~l~~pg~~g--------~Di~~~s~hK~l~~p~g~G-GPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~ 845 (985)
||+++|.+. +|+++.+ |.+.. | -| +|.+.+++++.+.+.....+ .+ ....+
T Consensus 260 GFGRTG~~FA~e~~gi~PDi~~~a--KGLT~----GY~P-l~a~l~~~~I~~~~~~~~~~------------~f-~HG~T 319 (449)
T COG0161 260 GFGRTGKMFACEHAGIVPDILCLA--KGLTG----GYLP-LSAVLTSDRIYEAFSDGDAG------------AF-MHGHT 319 (449)
T ss_pred CCCcCchhhhhhhcCCCCCeeeec--ccccc----cchh-hHhHhhhHHHHHHHhcccCC------------ee-ccCCc
Confidence 788887653 6999874 87742 2 24 34344455544332211000 01 11123
Q ss_pred chhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cC--CeeecCCCCceeeEEEEEecCccccCCCC---
Q 001989 846 PWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HY--PILFRGVNGTVAHEFIVDLRGLKNTAGIE--- 919 (985)
Q Consensus 846 ~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~--~l~~~~~~~~~~~~~iv~~~~~~~~~g~~--- 919 (985)
+.|++++|++|.+.|..+.++++.+ +..+...+|.++|++ .. ..+-.-..... ...+.+.. +.....
T Consensus 320 YsghPlacAaAla~L~i~e~e~l~~---~~~~~~~~l~~~L~~~l~~~p~VgdVR~~Gl--i~~iElv~--d~~t~~~f~ 392 (449)
T COG0161 320 YSGNPLACAAALANLDILEEEDLLE---RVAEIGAYLQAGLQAALADHPLVGDVRGLGL--IGAIELVA--DKATKTPFE 392 (449)
T ss_pred cccCHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHHHHhcccCCcEEEeeccce--EEEEEEec--ccccccchh
Confidence 5568899999999999998887765 556788899999885 22 12110000011 12233221 001111
Q ss_pred ---HHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 920 ---PEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 920 ---~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
...+.+.+.++|+++.++ .+.+-++|+...|++|||+ +++++.+.+++..
T Consensus 393 ~~~~~~~~~~~~e~Gl~iRp~----g~~i~~~PPliit~~eid~--l~~~l~~al~~~~ 445 (449)
T COG0161 393 ARVGARVRAAALERGLLIRPL----GDVIYLMPPLIITREEIDE--LVDALREALDETL 445 (449)
T ss_pred hhHHHHHHHHHHHCCeEEeec----CCEEEEcCCccCCHHHHHH--HHHHHHHHHHHHH
Confidence 567888889999998655 3799999999999999999 8888988887643
No 207
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=99.72 E-value=1.5e-15 Score=177.57 Aligned_cols=337 Identities=16% Similarity=0.159 Sum_probs=200.9
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhC--CCccceecCcHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITG--FDSFSLQPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G--~~~~~~~~~sGa~a~~a~l~air 669 (985)
..||++++.+..+...+.........+.-.. +...++.+.+++++. .+ ..++.+||++|++++++.+|
T Consensus 58 ~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~---------~~~~~la~~l~~~~p~~~~-~v~f~~sGseA~e~AlklAr 127 (442)
T PRK13360 58 VNAGHGRPEIVEAVRAQAGELDYAPAFQMGH---------PKAFELANRIAEIAPGGLN-HVFFTNSGSESVDTALKIAL 127 (442)
T ss_pred hccCCCCHHHHHHHHHHHHhCCCcccCCcCC---------HHHHHHHHHHHHhCCCCCC-EEEEeCCcHHHHHHHHHHHH
Confidence 4578887777766554432211111111111 223477788888873 33 34678999999999999999
Q ss_pred HHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCCC-----CC--------CCHHHHHHH
Q 001989 670 AYHKARGDHHRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDAK-----GN--------INIEELRKA 723 (985)
Q Consensus 670 ~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~~-----g~--------iD~e~L~~~ 723 (985)
.|...+|..++.+||. ..++||....+....| -.+..+|...+ .. -++++|+++
T Consensus 128 ~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~ 207 (442)
T PRK13360 128 AYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERL 207 (442)
T ss_pred HHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHH
Confidence 8754444223556775 6789997654332111 12334444211 00 025688888
Q ss_pred HHhc-CCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEe
Q 001989 724 AEAN-RDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHL 789 (985)
Q Consensus 724 i~~~-~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~ 789 (985)
+..+ .+++++|+++.. ...|.+. + +++|.++|+++|+++|+|++|. |+++.|.+ .+|++++
T Consensus 208 l~~~~~~~~aavivEpi~g~~G~~~-~~~~fl~~lr~lc~~~g~llI~DEv~t----G~GrtG~~~a~~~~gv~PDivt~ 282 (442)
T PRK13360 208 VTLHDASTIAAVIVEPVAGSTGVLI-PPKGYLQRLREICDKHGILLIFDEVIT----GFGRLGAPFAAQYFGVTPDLLTC 282 (442)
T ss_pred HHhcCCCcEEEEEEccccCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEechhh----CCCCCccchhhhhcCCCCceeee
Confidence 8643 256788887653 3467775 5 9999999999999999999873 23333322 2688866
Q ss_pred CCcccccccCCCC-CCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 790 NLHKTFCIPHGGG-GPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 790 s~hK~l~~p~g~G-GPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
.|.++ +| -|- |.+.+++++.+.+..... . .... -..+++.|+++.++++.+.|+.+..+++
T Consensus 283 --gK~l~----gG~~P~-gav~~~~~i~~~~~~~~~---~-------~~~~-~~~~T~~g~pl~~aaa~a~L~~l~~~~l 344 (442)
T PRK13360 283 --AKGLT----NGAIPM-GAVFVSSEIHDAFMQGPE---A-------GIEF-FHGYTYSGHPLACAAALATLDLYEREGL 344 (442)
T ss_pred --eeccc----cCccce-EEEEEcHHHHHHhhcCCc---c-------cccc-ccCCCCCCCHHHHHHHHHHHHHHHhCCH
Confidence 37763 33 254 446667776554321100 0 0000 0112445677778888888988877654
Q ss_pred HHHHHHHHHHHHHHHHHhhcc--CCeee--cCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCE
Q 001989 869 TEASKIAILNANYMAKRLEKH--YPILF--RGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGT 944 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g--~~l~~--~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~ 944 (985)
. ++..++.+++++.|++. +..+. .+. + .+..+.+... .........++.++|.++|+++... .+.
T Consensus 345 ~---~~~~~~g~~l~~~l~~l~~~~~v~~vrG~-G-l~~~~~l~~~--~~~~~~~~~~~~~~l~~~Gvl~~~~----~~~ 413 (442)
T PRK13360 345 L---TRAARLAPYWEDALHSLRDAPHVIDIRNL-G-LVGAVELAPR--DGKPGKRAYEVFLKCFEKGLMIRYT----GDI 413 (442)
T ss_pred H---HHHHHHHHHHHHHHHHhhcCCCeeeeecc-c-eEEEEEEecC--CCCcchhHHHHHHHHHHCCcEEEec----CCE
Confidence 4 46667788888888751 22211 111 1 1211212111 0000113467888899999988533 368
Q ss_pred EEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 945 LMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 945 lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+|++|+..+|++|||+ ++++|++++.++
T Consensus 414 lr~~Ppl~~t~~eid~--~~~~l~~~l~~~ 441 (442)
T PRK13360 414 LALSPPLIIEEAQIDE--LFDILAQALKET 441 (442)
T ss_pred EEEeCCCccCHHHHHH--HHHHHHHHHHHh
Confidence 9999999999999999 889998888653
No 208
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.72 E-value=9.2e-16 Score=180.32 Aligned_cols=346 Identities=12% Similarity=0.111 Sum_probs=211.2
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air~ 670 (985)
..||+|++.+..+...+.............. +...++.+.|++++... ...++.+||++|++++++.+|.
T Consensus 68 ~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~---------~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~ 138 (460)
T PRK06916 68 NVHGHQVPELDEAIREQLNKIAHSTLLGLAN---------VPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQ 138 (460)
T ss_pred hhcCCCCHHHHHHHHHHHHhCCCccccccCC---------HHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHH
Confidence 3578888887766555542211111111011 22346778888887532 2457789999999999999998
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCCC-----C-------CCCHHHHHHHHH
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDAK-----G-------NINIEELRKAAE 725 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~~-----g-------~iD~e~L~~~i~ 725 (985)
|...+|.+++.+||. ...+||....+....| ..+..+|.... + ..|++++++.++
T Consensus 139 ~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~ 218 (460)
T PRK06916 139 YWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLK 218 (460)
T ss_pred HHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHH
Confidence 765555444567765 6789997755543322 12333443210 0 124677888887
Q ss_pred hcCCCEEEEEEEc-C-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCc
Q 001989 726 ANRDNLSTLMVTY-P-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLH 792 (985)
Q Consensus 726 ~~~~~t~~Vvv~~-p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~h 792 (985)
++.+++++|+++- . ...|++.+ -+++|.++|+++|+++|+|+++ .|+.+.|.+ .+|+++++
T Consensus 219 ~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~----TG~GRtG~~~a~~~~gv~PDiv~~g-- 292 (460)
T PRK06916 219 EKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVA----TGFGRTGKMFACEHENVTPDIMTAG-- 292 (460)
T ss_pred hCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechh----hCCCcCchhhHHHhcCCCCCeeeee--
Confidence 6667899999876 3 34566542 3899999999999999999886 334455533 27998763
Q ss_pred ccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHH
Q 001989 793 KTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEAS 872 (985)
Q Consensus 793 K~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~ 872 (985)
|.+ ++|-.-+|.+++++++.+.+....-.. .. ....+++.|+++.++++.+.|..+..+++.
T Consensus 293 K~l----~gG~~Pi~av~~~~ei~~~~~~~~~~~----------~~-~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~--- 354 (460)
T PRK06916 293 KGL----TGGYLPIAITVTTDEIYNAFYGDYEEQ----------KT-FFHGHSYTGNPLGCAVALANLELYEKTNLI--- 354 (460)
T ss_pred hhh----hcCccccceeeecHHHHHHhhcccccc----------Cc-cccCCCCCCCHHHHHHHHHHHHHHHhccHH---
Confidence 766 333223566666776654332110000 00 001224556778888888889888776654
Q ss_pred HHHHHHHHHHHHHhhcc--CCee--ecCCCCceeeEEEEEec-CccccCCCC---HHHHHHHHHHCCCccCCCCCCCCCE
Q 001989 873 KIAILNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLR-GLKNTAGIE---PEDVAKRLMDYGFHGPTMSWPVPGT 944 (985)
Q Consensus 873 ~~~~~~a~~l~~~L~~g--~~l~--~~~~~~~~~~~~iv~~~-~~~~~~g~~---~~~v~~~L~~~Gi~~~~~~~p~~~~ 944 (985)
++..++.+++++.|++. ..++ +.+. + .+..+.+.-+ ..+.....+ ...+.+.|.++|+++... .+.
T Consensus 355 ~~~~~~g~~l~~~l~~l~~~~~v~~vrG~-G-lm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~----g~~ 428 (460)
T PRK06916 355 EQVARKTEYVATQLEDLFALKHVGDIRQL-G-LMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPL----GNT 428 (460)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCeEEeecC-C-ceeeEEeecccccccCCCchhhHHHHHHHHHHHCCeEEEec----CCE
Confidence 46677788888888752 2211 1121 2 2222222111 000000001 246888899999987533 378
Q ss_pred EEEeccCCCCHHHHHHHHccCChhHHHHhhccCC
Q 001989 945 LMIEPTESESKSWTGIVMLSSPSEKKLHRLKMGR 978 (985)
Q Consensus 945 lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~~ 978 (985)
+|+.|+..+|++|||. ++++|+++++++..|+
T Consensus 429 l~~~Ppl~it~~~id~--~~~~l~~~l~~~~~~~ 460 (460)
T PRK06916 429 IVFMPPLASTIDELDE--MLRILYKAISDVTEGE 460 (460)
T ss_pred EEEeCCcccCHHHHHH--HHHHHHHHHHhhccCC
Confidence 9999999999999999 8899999998877664
No 209
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=99.72 E-value=1.8e-15 Score=177.07 Aligned_cols=341 Identities=14% Similarity=0.139 Sum_probs=202.7
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air~ 670 (985)
..||++++.+..+...+.......... .+. .+...++.+.|++++... ...++.+||++|++++++.+|.
T Consensus 61 ~~lGh~~p~v~~ai~~ql~~l~~~~~~-~~~--------~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~AlklAr~ 131 (445)
T PRK09221 61 CNAGHGRPEIVEAVARQAATLDYAPAF-QMG--------HPLAFELAERLAELAPGGLDHVFFTNSGSESVDTALKIALA 131 (445)
T ss_pred ccCCCCCHHHHHHHHHHHHhccCcccc-ccC--------CHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHH
Confidence 457888777765544443211111111 010 122346778888887422 2346789999999999999998
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCC-C-----CC-------CCHHHHHHHH
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDA-K-----GN-------INIEELRKAA 724 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~-~-----g~-------iD~e~L~~~i 724 (985)
|...+|...+.+||. ...+||....+....| ..+..+|... . +. .+++++++.+
T Consensus 132 ~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 211 (445)
T PRK09221 132 YHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLV 211 (445)
T ss_pred HHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHH
Confidence 864444323556765 7789997654332111 1133344321 0 00 1146788888
Q ss_pred HhcC-CCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeC
Q 001989 725 EANR-DNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLN 790 (985)
Q Consensus 725 ~~~~-~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s 790 (985)
+++. +++++|+++.. +..|++. + +++|.++|+++|+++|+|++|. |+++.|.+ .+|+++++
T Consensus 212 ~~~~~~~iAavi~Epv~g~~G~~~-~~~~yl~~l~~lc~~~g~llI~DEV~t----G~GRtG~~~~~~~~gv~PDi~~~g 286 (445)
T PRK09221 212 ALHDASTIAAVIVEPMAGSAGVLV-PPKGYLQRLREICDKHGILLIFDEVIT----GFGRLGAAFAAERFGVTPDIITFA 286 (445)
T ss_pred HhcCCCcEEEEEEecccCCCCccc-CCHHHHHHHHHHHHHcCCEEEEeehhh----CCCcCchhhHHHhcCCCCCEEEec
Confidence 6543 57888888753 4568776 5 9999999999999999999873 33343322 25888764
Q ss_pred CcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHH
Q 001989 791 LHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTE 870 (985)
Q Consensus 791 ~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~ 870 (985)
|.++ +|..-+|.+++++++.+.+.... .. .... ...+++.|+++.++++.+.|+.+..+++
T Consensus 287 --K~l~----gG~~Pi~av~~~~~i~~~~~~~~---~~-------~~~~-~~~~T~~~~pl~~aaa~a~L~~i~~~~l-- 347 (445)
T PRK09221 287 --KGLT----NGAIPMGAVIASDEIYDAFMQGP---EY-------AIEF-FHGYTYSAHPVACAAGLATLDIYREEDL-- 347 (445)
T ss_pred --cccc----cCcccceeeEEcHHHHHhhccCc---cc-------cccc-ccccCCCcCHHHHHHHHHHHHHHHhccH--
Confidence 7763 34222555677777655442110 00 0000 0112345677777788888888866654
Q ss_pred HHHHHHHHHHHHHHHhhcc--CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEe
Q 001989 871 ASKIAILNANYMAKRLEKH--YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIE 948 (985)
Q Consensus 871 ~~~~~~~~a~~l~~~L~~g--~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris 948 (985)
.++..++.++|+++|++. +..+..-.....+. .+.+.............+.++|.++|+++... .+.+|++
T Consensus 348 -~~~~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl~~--~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~----~~~lr~~ 420 (445)
T PRK09221 348 -FERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVA--GIELAPRPGAPGARGYEAFMKCFEKGLLVRYT----GDTIALS 420 (445)
T ss_pred -HHHHHHHHHHHHHHHHhhccCCCEEEEecCceEE--EEEEecccccccchHHHHHHHHHHCCeEEeec----CCEEEEE
Confidence 456778888999888752 22211100001221 22221100000122467889999999987532 3689999
Q ss_pred ccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 949 PTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 949 ~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
|+..+|++|||+ ++++|++++.++
T Consensus 421 Ppl~~t~~eid~--~~~~l~~~l~~~ 444 (445)
T PRK09221 421 PPLIIEKAQIDE--LVDALGDALRAV 444 (445)
T ss_pred CCccCCHHHHHH--HHHHHHHHHHhh
Confidence 999999999999 889999888654
No 210
>PRK09082 methionine aminotransferase; Validated
Probab=99.72 E-value=5.7e-16 Score=179.21 Aligned_cols=337 Identities=11% Similarity=0.131 Sum_probs=205.7
Q ss_pred HHHHHHHHhccccCcccccccccccccCCCccccccccccccc-cccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc--
Q 001989 573 LLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSF-ANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS-- 649 (985)
Q Consensus 573 ~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f-~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~-- 649 (985)
+++.+..+.+++ +++.|+.+.+.++............. ...+.|.+ .+|..++.+++++++.+++|.+.
T Consensus 19 ~~~~~~~~~~~~-----~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~~lr~~~a~~l~~~~~~~~~~ 90 (386)
T PRK09082 19 IFTVMSALAAEH-----GAINLSQGFPDFDGPPYLVEALAYAMAAGHNQYPP---MTGVAALREAIAAKTARLYGRQYDA 90 (386)
T ss_pred HHHHHHHHHhhC-----CEEEecCCCCCCCCCHHHHHHHHHHHHcCCCCCCC---CCCcHHHHHHHHHHHHHHhCCCCCC
Confidence 455555555432 35778776655543222222111111 11223333 36888888888999998888753
Q ss_pred -cceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-CCCCCHHHHHHHHHh
Q 001989 650 -FSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA-KGNINIEELRKAAEA 726 (985)
Q Consensus 650 -~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~-~g~iD~e~L~~~i~~ 726 (985)
..+.. +++++|...++ +.+. .++|+|+++++.|+.+...++..|.+++.++.+. ++.+|+++++++++
T Consensus 91 ~~~i~~t~G~~~al~~~~---~~~~-----~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~- 161 (386)
T PRK09082 91 DSEITVTAGATEALFAAI---LALV-----RPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAIS- 161 (386)
T ss_pred CCcEEEeCCHHHHHHHHH---HHHc-----CCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCcccccCCHHHHHHhcC-
Confidence 23444 44455554333 3321 4678999999988887777888999999999864 57899999999997
Q ss_pred cCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC--CCC----CCccCCcEEEeCCccccc
Q 001989 727 NRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG--LTS----PGYIGADVCHLNLHKTFC 796 (985)
Q Consensus 727 ~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~--l~~----pg~~g~Di~~~s~hK~l~ 796 (985)
+++++|++++| |++|.+. .++++|.++|+++|+++++|.++.... .+ ... ++...-.+++.|++|.|+
T Consensus 162 --~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~ 239 (386)
T PRK09082 162 --PRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYH 239 (386)
T ss_pred --ccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhcc
Confidence 78899999988 5799762 278999999999999999999873211 11 001 111234577888899886
Q ss_pred ccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 001989 797 IPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAI 876 (985)
Q Consensus 797 ~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~ 876 (985)
+| |.++|++++++++...+.... .....+++ ...+. ++..++.. .++-+++..+...
T Consensus 240 ~~----G~RiG~iv~~~~l~~~~~~~~------------~~~~~~~~--~~~q~----~~~~~l~~-~~~~~~~~~~~~~ 296 (386)
T PRK09082 240 VT----GWKVGYCVAPAALSAEFRKVH------------QYNTFTVN--TPAQL----ALADYLRA-EPEHYLELPAFYQ 296 (386)
T ss_pred ch----hhhhhhhhCCHHHHHHHHHHH------------hhhcCCCC--hHHHH----HHHHHHhC-ChHHHHHHHHHHH
Confidence 54 678999998876654332100 00001111 11111 12233321 3444555555667
Q ss_pred HHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH-HHCCCccCCC-CC---C-CCCEEEEec
Q 001989 877 LNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL-MDYGFHGPTM-SW---P-VPGTLMIEP 949 (985)
Q Consensus 877 ~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L-~~~Gi~~~~~-~~---p-~~~~lris~ 949 (985)
++.+++.+.|++ ++++ ..+.+.++ +.++++.+ .+.+..++++.| .++|+.+... .| + ..+++|+++
T Consensus 297 ~~~~~~~~~L~~~~~~~--~~~~g~~~--~~~~~~~~---~~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~~~Ri~~ 369 (386)
T PRK09082 297 AKRDRFRAALANSRFKL--LPCEGTYF--QLVDYSAI---SDLDDVEFCQWLTREHGVAAIPLSVFYADPFPHRLVRLCF 369 (386)
T ss_pred HHHHHHHHHHHhCCCcc--cCCCeeEE--EEEecccc---CCCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCEEEEEe
Confidence 888889999886 4443 12222222 33455411 135678899987 5679986432 23 2 247899999
Q ss_pred cCCCCHHHHHH
Q 001989 950 TESESKSWTGI 960 (985)
Q Consensus 950 t~~~t~eeId~ 960 (985)
+. +++++++
T Consensus 370 ~~--~~~~l~~ 378 (386)
T PRK09082 370 AK--QEETLDA 378 (386)
T ss_pred cC--CHHHHHH
Confidence 74 6777777
No 211
>PLN00175 aminotransferase family protein; Provisional
Probab=99.72 E-value=1.5e-15 Score=176.94 Aligned_cols=334 Identities=16% Similarity=0.154 Sum_probs=204.7
Q ss_pred ccccccccccCCCcccccccccccccc-ccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC--cc-ceecCcH-HHHHHHH
Q 001989 590 SMIPLGSCTMKLNATTEMMPVTWPSFA-NIHPFAPADQAQGYQEMFNNLGEWLCTITGFD--SF-SLQPNAG-AAGEYAG 664 (985)
Q Consensus 590 ~~~~lG~~t~~~~~~~~~~~~~~~~f~-~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~--~~-~~~~~sG-a~a~~a~ 664 (985)
+++.|+.|.+.+++............. ..+.|.+ .+|..++.+.+.+++.+..|.+ .. .+..++| ++|...+
T Consensus 55 ~~i~l~~G~P~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~ 131 (413)
T PLN00175 55 GAINLGQGFPNFDGPDFVKEAAIQAIRDGKNQYAR---GFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAAT 131 (413)
T ss_pred CeEecCCCCCCCCCCHHHHHHHHHHHhcCCCCcCC---CCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHH
Confidence 367788777666543222111000000 1123333 3577777777777777766754 33 3555555 4454333
Q ss_pred HHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCc
Q 001989 665 LMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYP-STH 742 (985)
Q Consensus 665 l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~ 742 (985)
++.+. +++|+|+++++.|..+...++..|++++.+++++ ++.+|+++|++++. +++++|++++| |++
T Consensus 132 ---~~~l~-----~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~---~~~k~i~i~~p~NPt 200 (413)
T PLN00175 132 ---ILGLI-----NPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFT---SKTRAILINTPHNPT 200 (413)
T ss_pred ---HHHhC-----CCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcC---cCceEEEecCCCCCC
Confidence 33221 4789999999888777777889999999999864 47899999999997 78999999998 579
Q ss_pred cccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC----C-CCCCccCCcEEEeCCcccccccCCCCCCceEEEEEccc
Q 001989 743 GVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG----L-TSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH 814 (985)
Q Consensus 743 G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~----l-~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~ 814 (985)
|.+. .++++|+++|+++|+++++|+++.... .+ + ..++..+..|++.|+.|.|++| |.++|+++++++
T Consensus 201 G~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~----G~RiG~~v~~~~ 276 (413)
T PLN00175 201 GKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLT----GWKIGWAIAPPH 276 (413)
T ss_pred CcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCc----chheeeeEeCHH
Confidence 9985 258889999999999999999874211 11 0 0111123357788989998654 788999999877
Q ss_pred ccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCee
Q 001989 815 LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPIL 893 (985)
Q Consensus 815 l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~ 893 (985)
+...+.... .....+.+...+. ++..+|. -+.+-+++..+...++++++.+.|++ ++.+.
T Consensus 277 l~~~l~~~~--------------~~~~~~~s~~~Q~----a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 337 (413)
T PLN00175 277 LTWGVRQAH--------------SFLTFATATPMQW----AAVAALR-APESYYEELKRDYSAKKDILVEGLKEVGFKVY 337 (413)
T ss_pred HHHHHHHHH--------------hhccCCCCHHHHH----HHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHHCCCeec
Confidence 654432110 0001111111121 1222332 23334556666677888899999987 44432
Q ss_pred ecCCCCceeeEEEEEecCccccCCC-CHHHHHHHHH-HCCCccCC-CCC-----CCCCEEEEeccCCCCHHHHHHHHccC
Q 001989 894 FRGVNGTVAHEFIVDLRGLKNTAGI-EPEDVAKRLM-DYGFHGPT-MSW-----PVPGTLMIEPTESESKSWTGIVMLSS 965 (985)
Q Consensus 894 ~~~~~~~~~~~~iv~~~~~~~~~g~-~~~~v~~~L~-~~Gi~~~~-~~~-----p~~~~lris~t~~~t~eeId~~~~~~ 965 (985)
.+.+.++ +.+++.. .+. +..++++.|. ++|+.+.+ ..| +..+.+||++.. ++++++. .++
T Consensus 338 --~p~g~~f--~~~~~~~----~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~~iRls~~~--~~e~l~~--~~~ 405 (413)
T PLN00175 338 --PSSGTYF--VMVDHTP----FGFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKNLVRFAFCK--DEETLRA--AVE 405 (413)
T ss_pred --CCCeeEE--EEEeccc----cCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCCEEEEEEcC--CHHHHHH--HHH
Confidence 2223332 3344421 133 4678999886 56987543 222 124689999973 7888888 667
Q ss_pred ChhHHHH
Q 001989 966 PSEKKLH 972 (985)
Q Consensus 966 ~l~~~~~ 972 (985)
.|++.++
T Consensus 406 rL~~~~~ 412 (413)
T PLN00175 406 RMKTKLK 412 (413)
T ss_pred HHHHHHh
Confidence 7776654
No 212
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=99.72 E-value=7.2e-16 Score=175.37 Aligned_cols=301 Identities=14% Similarity=0.131 Sum_probs=194.6
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~ 671 (985)
..+|+|++++..+...+......+...++. +...++.+.++++++.+. .++.+||++|++++++++|.|
T Consensus 36 ~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~----------~~~~~la~~l~~~~~~~~-v~~~~SGseA~e~Alklar~~ 104 (364)
T PRK04013 36 NVLGHNHPEWVEEMSEQLEKLVVAGPMFEH----------EEKEEMLEELSKWVNYEY-VYMGNSGTEAVEAALKFARLY 104 (364)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCccCCcCC----------HHHHHHHHHHHhhcCCCE-EEEeCchHHHHHHHHHHHHHH
Confidence 458888777766555444322222222221 224577888999887654 466799999999999998876
Q ss_pred HHhcCCCCCCEEEE-cCCCCcccHHHHHH-------CCc-----EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEc
Q 001989 672 HKARGDHHRNVCII-PVSAHGTNPATAAM-------CGM-----KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTY 738 (985)
Q Consensus 672 ~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~-------~G~-----~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~ 738 (985)
.++++||. ..++||....+... .++ .+..+|. .|++++++.+. +++++|+++.
T Consensus 105 ------~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~---~~~aAvivEp 170 (364)
T PRK04013 105 ------TGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPF-----NDVEAAKEAIT---KETAAVIFEP 170 (364)
T ss_pred ------hCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecC-----CCHHHHHHHhc---CCcEEEEEcC
Confidence 24467776 66789976554331 111 2333443 27899999987 7899999876
Q ss_pred CC-CccccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCcccccccCCCCCCce
Q 001989 739 PS-THGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLHKTFCIPHGGGGPGM 806 (985)
Q Consensus 739 pn-~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~hK~l~~p~g~GGPg~ 806 (985)
.. ..|.+.+| +++|.++|+++|+++|+|+++. |+ +.|.+ .+|+++++ |.++ +|-|-
T Consensus 171 i~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~t----G~-RtG~~~a~~~~gv~PDiv~~g--K~lg----gG~P~- 238 (364)
T PRK04013 171 IQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQS----GL-RTGKFLAIEHYKVEPDIVTMG--KGIG----NGVPV- 238 (364)
T ss_pred CcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh----cC-CCCchhHHHhcCCCCCEEEec--cccc----CCcee-
Confidence 43 45666545 9999999999999999999873 44 45433 37988773 7663 44454
Q ss_pred EEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh
Q 001989 807 GPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRL 886 (985)
Q Consensus 807 G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L 886 (985)
|.+..++++.+ +. ..+++.|+++.++++.+.|..+.++++.+.+++. + +++
T Consensus 239 ~a~~~~~~~~~---~~-------------------~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~------l-~~l 289 (364)
T PRK04013 239 SLTLTNFDVER---GK-------------------HGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK------F-IEI 289 (364)
T ss_pred EEEEecccccC---CC-------------------cCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH------H-HHh
Confidence 44445544311 10 1124566788888889999999887766544332 2 233
Q ss_pred hccCCe-eecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccC
Q 001989 887 EKHYPI-LFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSS 965 (985)
Q Consensus 887 ~~g~~l-~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~ 965 (985)
... .+ -..+. ..+ +-+.+. .....+.+.+.++|+.+.... .+.+|+.|+...|++|+|. +++
T Consensus 290 ~~~-~v~~vRG~--Gl~--~gve~~-------~~~~~i~~~~~~~Gll~~~~g---~~vlr~~Ppl~it~~~i~~--~~~ 352 (364)
T PRK04013 290 KGE-RVVTTRGR--GLM--IGIVLK-------KPVGKYVEELQNRGYLVHTAG---QRVIRLLPPLIISKDTMEE--AKS 352 (364)
T ss_pred ccC-cceeeeeC--cEE--EEEEeC-------CcHHHHHHHHHhCCcEEeeCC---CCEEEEeCCcccCHHHHHH--HHH
Confidence 221 11 01121 122 223332 125678899999999875432 3789999999999999999 889
Q ss_pred ChhHHHHhhc
Q 001989 966 PSEKKLHRLK 975 (985)
Q Consensus 966 ~l~~~~~~~~ 975 (985)
+|++++.++-
T Consensus 353 ~l~~~l~~~~ 362 (364)
T PRK04013 353 AIEGVINDIL 362 (364)
T ss_pred HHHHHHHHHh
Confidence 9999887643
No 213
>PRK07681 aspartate aminotransferase; Provisional
Probab=99.72 E-value=1.4e-15 Score=176.66 Aligned_cols=295 Identities=13% Similarity=0.104 Sum_probs=186.3
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cc-cceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DS-FSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~-~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+.+.+++.+..|. +. ..+..++|++ +.. +++..+. .+||+|+++++.|+.+...++..|++
T Consensus 69 ~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~---~~~~~~~-----~~Gd~Vlv~~P~y~~~~~~~~~~G~~ 140 (399)
T PRK07681 69 SGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLV---HLPMVYA-----NPGDIILVPDPGYTAYETGIQMAGAT 140 (399)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHH---HHHHHhC-----CCCCEEEECCCCccchHHHHHhcCCE
Confidence 57666666666666665554 43 4565555554 432 2233321 47899999999888888888899999
Q ss_pred EEEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cCCC
Q 001989 704 IVSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VGLT 777 (985)
Q Consensus 704 vv~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~l~ 777 (985)
++.+|++++ +.+|++++++++. +++++|++++| |++|.+.+ .+++|.++|+++|+++++|.++..-. .+-.
T Consensus 141 ~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~ 217 (399)
T PRK07681 141 SYYMPLKKENDFLPDLELIPEEIA---DKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNK 217 (399)
T ss_pred EEEEecCCCCCCcCCHHHHHHhcc---ccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCC
Confidence 999998754 4689999999886 68999999998 57999861 37889999999999999999874211 1100
Q ss_pred --C----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 778 --S----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 778 --~----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
. ++.....|++.|++|.|+.| |.++|++++++++.+.+.... .....+.+...+
T Consensus 218 ~~~~~~~~~~~~~~i~~~S~SK~~~~~----GlRiG~~i~~~~l~~~~~~~~--------------~~~~~~~s~~~q-- 277 (399)
T PRK07681 218 PISFLSVPGAKEVGVEINSLSKSYSLA----GSRIGYMIGNEEIVRALTQFK--------------SNTDYGVFLPIQ-- 277 (399)
T ss_pred CCChhhCCCCcccEEEEeecccccCCc----cceeEEEecCHHHHHHHHHHH--------------hhcccCCCHHHH--
Confidence 0 11112347778889988644 678999998876654432100 000111111111
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH-
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD- 929 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~- 929 (985)
.++..++. -+.+-+++..+...++.+++.+.|++ ++++. .+.+..+ +.++++ .+.+..+++++|.+
T Consensus 278 --~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~p~~g~f--~~~~l~-----~~~~~~~~~~~l~~~ 345 (399)
T PRK07681 278 --KAACAALR-NGAAFCEKNRGIYQERRDTLVDGFRTFGWNVD--KPAGSMF--VWAEIP-----KGWTSLSFAYALMDR 345 (399)
T ss_pred --HHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCccc--CCCeeeE--EEEECC-----CCCCHHHHHHHHHHh
Confidence 11222222 22233444455567778888888876 44432 2222222 345554 24567889999887
Q ss_pred CCCccCCC-CCC--CCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 930 YGFHGPTM-SWP--VPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 930 ~Gi~~~~~-~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
+||.+... .|. .++++||++. .+++++++ +++.|++
T Consensus 346 ~gv~v~pg~~f~~~~~~~iRis~~--~~~~~~~~--~l~~l~~ 384 (399)
T PRK07681 346 ANVVVTPGHAFGPHGEGFVRIALV--QDEEVLQQ--AVENIRN 384 (399)
T ss_pred CCEEEeCChhhCcCCCCeEEEEec--CCHHHHHH--HHHHHHH
Confidence 79986542 222 2478999997 46899998 6666665
No 214
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.72 E-value=1.3e-15 Score=174.50 Aligned_cols=211 Identities=15% Similarity=0.141 Sum_probs=155.3
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|++.|.+. +.++.+|++++.++++++ . ++||+||+++..|+.+...+....+..|+++++++. ++
T Consensus 53 ~~lE~~lA~l~g~~~--~~~~~sG~~Ai~~al~al-l--~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~~~e~ 127 (377)
T TIGR01324 53 FALQDAMCELEGGAG--CYLYPSGLAAVTNSILAF-V--KAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPLIGED 127 (377)
T ss_pred HHHHHHHHHHhCCCc--EEEECcHHHHHHHHHHHh-c--CCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCCCHHH
Confidence 447789999999764 778999999888877765 3 389999999999987766554444567999988876 56
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++++| |++|.+.|+++|+++||++|++++|| +.++.|.+..|.++|+||+++|+ |+++++ |+
T Consensus 128 l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD-~t~a~g~~~~pl~~gaDivv~S~tK~l~G~---~d 203 (377)
T TIGR01324 128 IATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMID-NTWAAGLLFKPLEHGVDISIQAGTKYLVGH---SD 203 (377)
T ss_pred HHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEE-CCCccccccCccccCceEEEecCceeccCC---CC
Confidence 777 8889999999998 78999999999999999999999994 46777877788899999999998 888654 22
Q ss_pred CcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHH
Q 001989 368 PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIA 447 (985)
Q Consensus 368 P~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~ 447 (985)
-.+|+++++++..+++-. .++-.|+. . ++. ..|+..-|.+-+..+.
T Consensus 204 ~~gG~v~~~~~~~~~l~~-------------------------~~~~~G~~-l---~p~-----~a~~~~rgl~tl~~R~ 249 (377)
T TIGR01324 204 IMIGTVVANARTWDQLRE-------------------------HSYLMGQM-V---DAD-----DAYTTLRGLRTLGVRL 249 (377)
T ss_pred ceEEEEEeCHHHHHHHHH-------------------------HHHHhCCC-C---CHH-----HHHHHHhhhhhHHHHH
Confidence 345888888765544310 00111110 0 111 1223344445556667
Q ss_pred HHHHHHHHHHHHHHhcCCCe
Q 001989 448 QRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 448 ~~~~~~a~~l~~~L~~~g~~ 467 (985)
++..++|..+++.|++...+
T Consensus 250 ~~~~~~a~~la~~L~~~p~v 269 (377)
T TIGR01324 250 KQHQESSLAIAKWLSEQPEV 269 (377)
T ss_pred HHHHHHHHHHHHHHHhCCCc
Confidence 88889999999999987434
No 215
>PLN02880 tyrosine decarboxylase
Probab=99.72 E-value=1.7e-15 Score=178.86 Aligned_cols=358 Identities=13% Similarity=0.059 Sum_probs=212.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCc-c--ceecCCCCCCCCCcHHHHHHHHhCCccccccCCC--hhhHhhhHHHHHH
Q 001989 140 KFSKFDEGLTESQMIEHMQKLASMNKV-Y--KSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPY--QAEIAQGRLESLL 214 (985)
Q Consensus 140 ~lp~~~~~~se~e~~~~~~~l~~~n~~-~--~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~py--q~e~sqg~l~~i~ 214 (985)
.+| +++.+-.++++++.+.-..+.. + ..|.|--.-+...++.+.+-+.+ +++.. .-+.+.+..+...
T Consensus 54 ~~p--~~~~~~~~~l~~~~~~i~~~~~~~~hP~f~~~~~~~~~~~~~lad~l~~------~~n~~~~~~~~sp~~~~lE~ 125 (490)
T PLN02880 54 SAP--NQPETLDQVLDDVQAKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSA------GLNIVGFSWITSPAATELEM 125 (490)
T ss_pred cCC--CCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeccCCCcHHHHHHHHHHH------hhccCCcccccCcccHHHHH
Confidence 455 4566888999999875433321 1 22333211111234444432221 11211 1134556667777
Q ss_pred HHHHHHHHhcCCCCc-------ceeeccchHHHH-HHHHHHhhhh-c--C----CCCEEEEcCCCChhHHHHHHHhhcCC
Q 001989 215 NFQTMIADLTGLPMS-------NASLLDEGTAAA-EAMAMCNNIQ-K--G----KKKTFIIASNCHPQTIDICITRADGF 279 (985)
Q Consensus 215 e~q~~ia~L~g~~~~-------~~sl~~~~ta~~-ea~~~a~~~~-~--~----~g~~Vlv~~~~H~s~~~~~~~~a~~~ 279 (985)
+.-+++++|+|++.. ...+++|||.+. .|+..|+... + + ++-.|++++..|.|+.+.++.+ +.
T Consensus 126 ~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~l--Gl 203 (490)
T PLN02880 126 IVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQIA--GI 203 (490)
T ss_pred HHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHHHc--CC
Confidence 888999999999864 366777777654 3333444321 0 0 2235678999999999998653 33
Q ss_pred Ce-EEEEeCc----------hhhhc-cCC------CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccC
Q 001989 280 DI-KVVVSDL----------KDIDY-KSG------DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTI 340 (985)
Q Consensus 280 gi-~v~~v~~----------~~l~~-l~~------~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~ 340 (985)
|- .++.|+. ++|++ +.+ ...+|+.+.+ +.+|.++|+++|+++|+++|++++||+ .++.+.
T Consensus 204 g~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDa-A~gg~~ 282 (490)
T PLN02880 204 HPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDA-AYAGSA 282 (490)
T ss_pred CHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEeh-hhHHHH
Confidence 31 1333332 34544 422 2456677776 569999999999999999999999954 233332
Q ss_pred CCC-------CCcccceEEEecC-ccccccCCCCCCcEEEEEEchh--hHhcCC--Cceeee-eecCCCCcce-eeeccc
Q 001989 341 LKP-------PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQE--YKRMMP--GRIVGV-SIDSSGKPAL-RVAMQT 406 (985)
Q Consensus 341 l~~-------~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~--~~~~lp--~~~vG~-t~d~~g~~~~-~l~l~t 406 (985)
+.. .+-.+||.++.+. |+++.|.+ +|++++++. +.+.+. ..++.. ..+..+...+ .+.+
T Consensus 283 ~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~-----~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i-- 355 (490)
T PLN02880 283 CICPEYRHYIDGVEEADSFNMNAHKWFLTNFD-----CSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQI-- 355 (490)
T ss_pred HhCHHHHHHhcCchhcCEEEECchhhcCCCcc-----EEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCc--
Confidence 222 1225799999999 77777754 688999852 222221 000000 0000000000 0001
Q ss_pred ccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC--
Q 001989 407 REQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-- 484 (985)
Q Consensus 407 re~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-- 484 (985)
+--||.. ++..-+-+..+|.+|++++.+++.++++|+.+.|++..+++++.++.++.++|+.+.
T Consensus 356 --~~~rr~~------------alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~Fr~~~~~ 421 (490)
T PLN02880 356 --PLGRRFR------------SLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPK 421 (490)
T ss_pred --CCCCccc------------HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEEeCCC
Confidence 1112211 111111146899999999999999999999999998844999977777777777541
Q ss_pred ---------HHHHHHHHHHcCc-eeeee--c-CCeEEEEeccCCC-HHHHHHHHHHHhC
Q 001989 485 ---------AHAIASAAYKIEM-NLRVV--D-SNTVTASFDETTT-LEDVDKLFIVFAG 529 (985)
Q Consensus 485 ---------~~~v~~~L~~~GI-~~~~~--~-~~~lris~t~~~t-~edId~li~aL~~ 529 (985)
..++.++|.+.|. ++... . ...+|+|++..+| ++|+|++++.+.+
T Consensus 422 ~~~~~~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~ 480 (490)
T PLN02880 422 NNEDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQD 480 (490)
T ss_pred CChhhHHHHHHHHHHHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 2345566665544 45432 2 3579999988665 5999999999975
No 216
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=99.71 E-value=2.7e-15 Score=170.23 Aligned_cols=312 Identities=16% Similarity=0.119 Sum_probs=203.8
Q ss_pred HHHHHHHHHHhcCC--CccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCC
Q 001989 151 SQMIEHMQKLASMN--KVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPM 228 (985)
Q Consensus 151 ~e~~~~~~~l~~~n--~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~ 228 (985)
.+.++|+++--+++ .+.++|||...+|..+.+... .+.. |+ |..+.+.++++.+|+++|.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~ylgl~~~~~~~~~~~~-~~~~-------~~--------g~~~~~~~Le~~lA~~~g~~~ 71 (346)
T TIGR03576 8 EKALEIIREKISRGGRDSLYDLTGLAGGFKIDEEDLE-LLET-------YV--------GPAIFEEKVQELGREHLGGPE 71 (346)
T ss_pred HHHHHHHHHHHhccCCccccccccCCCChhHHHHHHH-HHHH-------hc--------CCHHHHHHHHHHHHHHcCCCc
Confidence 45667777666665 468899999987655555443 3222 21 445778889999999999988
Q ss_pred cceeeccchHHHHHHHHHHhhhhcCCCCEEEEc---CCCChhHHHHHHHhhcCCCeEEEEe-CchhhhccCCCEeEEEEE
Q 001989 229 SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIA---SNCHPQTIDICITRADGFDIKVVVS-DLKDIDYKSGDVCGVLVQ 304 (985)
Q Consensus 229 ~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~---~~~H~s~~~~~~~~a~~~gi~v~~v-~~~~l~~l~~~t~~V~v~ 304 (985)
.++.+++||+.++.+++.++. ++||+|+++ ...|+++...++. .|.++... ++++++. .+++++|+++
T Consensus 72 e~ilv~~gg~~a~~~~~~al~---~~gd~Vli~~~d~p~~~s~~~~~~l----~ga~~~~~~~l~~l~~-~~~~~lIiit 143 (346)
T TIGR03576 72 EKILVFNRTSSAILATILALE---PPGRKVVHYLPEKPAHPSIPRSCKL----AGAEYFESDELSELKK-IDGTSLVVIT 143 (346)
T ss_pred ceEEEECCHHHHHHHHHHHhC---CCCCEEEECCCCCCCchhHHHHHHH----cCCEEeccCCHHHHhh-CcCceEEEEE
Confidence 889999999988887777653 389999864 4699999888753 46665432 3444432 3567888888
Q ss_pred cCCCCeee---ccHHHHHHHHHhCCcEEEEEecCccccCCC-----CCCcccceEEEecC-ccccccCCCCCCcEEEEEE
Q 001989 305 YPGTEGEV---LDYGDFIKNAHANGVKVVMATDLLALTILK-----PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLAT 375 (985)
Q Consensus 305 ~pn~~G~v---~di~~I~~~a~~~galliV~a~~~~lg~l~-----~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~ 375 (985)
.++++|.+ .|+++|+++|+++|++++|| +.++.++.. +..++|+|++++|. |++ +|+-+||+++
T Consensus 144 g~s~~G~v~~~~~L~~i~~la~~~~~~livD-EAy~~~~~~~~~~~~~~~~~~divv~s~SKal------aG~r~G~v~~ 216 (346)
T TIGR03576 144 GSTMDLKVVSEEDLKRVIKQAKSKEAIVLVD-DASGARVRRLYGQPPALDLGADLVVTSTDKLM------DGPRGGLLAG 216 (346)
T ss_pred CCCCCCcccCHHHHHHHHHHHHHcCCEEEEE-CCccccccccCCCCCHHHcCCcEEEeccchhc------cccceEEEEe
Confidence 77889998 79999999999999999994 455544321 11346789999987 754 3455689999
Q ss_pred chhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH-HHHhCcchHHHHHHHHHHHH
Q 001989 376 SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY-AVYHGPEGLKTIAQRVHGLA 454 (985)
Q Consensus 376 ~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~-l~~~g~~Gl~~i~~~~~~~a 454 (985)
++++++.|.. ...+++.|.++. ...+++. +..+ ..+.+.+...++.
T Consensus 217 ~~~li~~l~~-----------------------------~~~~~~~s~~~~-~~~aa~~aL~~~---~~~~~~~~l~~r~ 263 (346)
T TIGR03576 217 RKELVDKIKS-----------------------------VGEQFGLEAQAP-LLAAVVRALEEF---ELSRIRDAFKRKE 263 (346)
T ss_pred CHHHHHHHHH-----------------------------hhcCcccCccHH-HHHHHHHHHhhc---cHHHHHHHHHHHH
Confidence 9888776510 001111111111 2222221 1221 2355667777777
Q ss_pred HHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeeec-----CCeEEEEeccCC-CHHHHHHHHH
Q 001989 455 GTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVVD-----SNTVTASFDETT-TLEDVDKLFI 525 (985)
Q Consensus 455 ~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~~-----~~~lris~t~~~-t~edId~li~ 525 (985)
+++.+.++++ .+...+ .+=+.++++. .+.+.+.|.++||.+.... ++++|+|+.... ++.+.++|++
T Consensus 264 ~~~~~~l~~~---~~~~~~-~~f~~~~~~~~~~~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis~~~~~~~~~~~~~~~~ 339 (346)
T TIGR03576 264 EVYLRLFDKL---NVERTP-TGFVIKGVEEEKLIEIGLDLLRNYGIITITAVGMPGASKTLRFDLAAKDAERIGDDYLVE 339 (346)
T ss_pred HHHHHHHHhC---CCCcCC-CeEEEEeCCCCCHHHHHHHHHHhCCEEEeCCcccCCCCCeEEEEEecChHHhcCHHHHHH
Confidence 7877777744 332212 1113334442 3455566667899876531 578999998544 4458999999
Q ss_pred HHhCC
Q 001989 526 VFAGG 530 (985)
Q Consensus 526 aL~~~ 530 (985)
+|++.
T Consensus 340 al~~~ 344 (346)
T TIGR03576 340 AVKDS 344 (346)
T ss_pred HHHhc
Confidence 99864
No 217
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=99.71 E-value=1.4e-15 Score=173.59 Aligned_cols=280 Identities=17% Similarity=0.169 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
...++++.+++++|.+ ++.++.+||.+++.++.++.. ++||+|+++...|+++...+.. .|++++.++.
T Consensus 19 ~~~~~~~~la~~~~~~--~~~~~~sgt~al~~~l~~l~~--~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~~~~~~~ 90 (352)
T cd00616 19 KVREFEKAFAEYLGVK--YAVAVSSGTAALHLALRALGI--GPGDEVIVPSFTFVATANAILL----LGATPVFVDIDPD 90 (352)
T ss_pred HHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHcCC--CCCCEEEeCCcchHHHHHHHHH----cCCeEEEEecCCC
Confidence 3557889999999975 477788999887777766533 3889999999999999888753 5778877653
Q ss_pred ------hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCC---CCcccceEEEecC--
Q 001989 289 ------KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP---PGELGADIVVGSA-- 356 (985)
Q Consensus 289 ------~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~---~~~~GaDi~v~s~-- 356 (985)
+++++ +++++++|++++ ++|.+.|+++|.++|+++|+++++|+ .+++|.... .+.+ .|+.+.|.
T Consensus 91 ~~~~d~~~l~~~i~~~~~~v~~~~--~~G~~~~~~~i~~l~~~~~i~li~D~-a~~~g~~~~~~~~~~~-~d~~~~S~~~ 166 (352)
T cd00616 91 TYNIDPELIEAAITPRTKAIIPVH--LYGNPADMDAIMAIAKRHGLPVIEDA-AQALGATYKGRKVGTF-GDAGAFSFHP 166 (352)
T ss_pred cCCcCHHHHHHhcCcCCeEEEEEC--CCCCcCCHHHHHHHHHHcCCeEEEEC-CCCCCCeECCEEcccC-cceeEEcCCC
Confidence 34555 778899999886 58999999999999999999999953 445553321 1223 58877773
Q ss_pred -ccccccCCCCCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH
Q 001989 357 -QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY 434 (985)
Q Consensus 357 -k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~ 434 (985)
|+++ +|..|++.++ +++.+++....-+ |..... .+.+..+.+. +..+..+.+++
T Consensus 167 ~K~~~------~~~gg~~~~~~~~~~~~~~~~~~~------~~~~~~---------~~~~~~~~~~--~~~~~~~~aa~- 222 (352)
T cd00616 167 TKNLT------TGEGGAVVTNDEELAERARLLRNH------GRDRDR---------FKYEHEILGY--NYRLSEIQAAI- 222 (352)
T ss_pred CCCCc------ccCceEEEECCHHHHHHHHHHHHc------CCCCCC---------Cccccceeee--ccCcCHHHHHH-
Confidence 5552 2223666665 4665544211100 000000 0011111110 01111222332
Q ss_pred HHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC-----CcceEEEecC---C--HHHHHHHHHHcCceeeeec-
Q 001989 435 AVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-----FFDTVKVKCA---D--AHAIASAAYKIEMNLRVVD- 503 (985)
Q Consensus 435 l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-----~~~~~~~~~~---~--~~~v~~~L~~~GI~~~~~~- 503 (985)
.....++++++.++..++++++++.|+++.+++++..+ ....+.|.++ + ..++.+.|.++||.++...
T Consensus 223 -~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~~~~~~ 301 (352)
T cd00616 223 -GLAQLEKLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKEAGIETRVHYP 301 (352)
T ss_pred -HHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCeeeecC
Confidence 22233567888899999999999999997448877432 1123555544 3 8899999999999653210
Q ss_pred --------------------------CCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 504 --------------------------SNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 504 --------------------------~~~lris~t~~~t~edId~li~aL~ 528 (985)
.+.+|++++.++|++||++++++|+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 302 PLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR 352 (352)
T ss_pred ccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence 1579999999999999999999874
No 218
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=99.71 E-value=1.6e-15 Score=175.91 Aligned_cols=279 Identities=16% Similarity=0.177 Sum_probs=183.9
Q ss_pred hHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001989 204 EIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 204 e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v 283 (985)
+..+|..+...++++.+++++|.+ .++ ++.+|+.+..+++.++ . ++||+|++++..|+++...++. .|.++
T Consensus 80 ~~~~G~~~l~~~l~~~la~~~g~~-~~i-~~tsG~~a~~~~~~~l-~--~~gd~vi~~~~~~~~~~~~~~~----~~~~~ 150 (397)
T PRK06939 80 RFICGTQDLHKELEEKLAKFLGTE-DAI-LYSSCFDANGGLFETL-L--GKEDAIISDALNHASIIDGVRL----CKAKR 150 (397)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCC-cEE-EEcChHHHHHHHHHHh-C--CCCCEEEEEhhhhHHHHHHHHh----cCCce
Confidence 456788888888999999999976 344 4444566666655443 2 4899999999999999888753 34455
Q ss_pred EEe---Cchhhhc-cC----C--CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCC-------
Q 001989 284 VVS---DLKDIDY-KS----G--DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPG------- 345 (985)
Q Consensus 284 ~~v---~~~~l~~-l~----~--~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~------- 345 (985)
+.+ +++++++ +. + ++++|++.+. |.+|.+.|+++|.++|+++|+++++| +..+.|.+...+
T Consensus 151 ~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~D-e~~~~g~~~~~~~~~~~~~ 229 (397)
T PRK06939 151 YRYANNDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVD-DSHAVGFVGENGRGTVEHF 229 (397)
T ss_pred EEeCCCCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEE-CcccccCcCCCCCCHHHHc
Confidence 544 4556655 43 3 6777776543 67899999999999999999999994 344444332111
Q ss_pred --cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccc
Q 001989 346 --ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT 422 (985)
Q Consensus 346 --~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t 422 (985)
..++|++++|. |+|++ +.+|++++++++++.+-.. ... +.+ +++ +.
T Consensus 230 ~~~~~~~i~~~S~sK~~~g------~r~G~v~~~~~~~~~l~~~---------~~~-~~~-------------~~~--~~ 278 (397)
T PRK06939 230 GVMDRVDIITGTLGKALGG------ASGGYTAGRKEVIDWLRQR---------SRP-YLF-------------SNS--LA 278 (397)
T ss_pred CCCCCCcEEEEECHHHhCc------cCceEEEeCHHHHHHHHHh---------Ccc-ccc-------------cCC--CC
Confidence 12579999997 87742 2348999888877665110 000 100 011 11
Q ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCcee
Q 001989 423 AQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNL 499 (985)
Q Consensus 423 ~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~ 499 (985)
++...+..+++ .++. + .+++.++..++.+++++.|+++| +++.. +...-+.+..+. ..++.+.|.++||.+
T Consensus 279 ~~~~~a~~~al--~~~~-~-~~~~~~~~~~~~~~l~~~L~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v 352 (397)
T PRK06939 279 PAIVAASIKVL--ELLE-E-SDELRDRLWENARYFREGMTAAG-FTLGP-GEHPIIPVMLGDAKLAQEFADRLLEEGVYV 352 (397)
T ss_pred HHHHHHHHHHH--HHHh-c-CHHHHHHHHHHHHHHHHHHHHcC-CCcCC-CCCCEEEEEECCHHHHHHHHHHHHHCCceE
Confidence 12222233333 3332 2 25677888899999999999887 76543 211223233332 678999999999977
Q ss_pred eee-------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 500 RVV-------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 500 ~~~-------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
... ..+.+|++++.++|++||+++++.|..
T Consensus 353 ~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~ 389 (397)
T PRK06939 353 IGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEK 389 (397)
T ss_pred eeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 432 125799999999999999999999974
No 219
>PRK05968 hypothetical protein; Provisional
Probab=99.71 E-value=8e-16 Score=177.49 Aligned_cols=274 Identities=18% Similarity=0.130 Sum_probs=192.8
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--- 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~--- 289 (985)
..++++.+|+++|.+. +.++.+|++++.++++++ . ++||+||++...|+++...+...++..|++++++|.+
T Consensus 65 ~~~le~~lA~l~g~~~--av~~~sG~~Ai~~al~al-~--~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~ 139 (389)
T PRK05968 65 VRAFEEMLAKLEGAED--ARGFASGMAAISSTVLSF-V--EPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDGRDEE 139 (389)
T ss_pred HHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHH-h--CCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCCCCHH
Confidence 5568899999999975 456788887776666554 2 3899999999999998877766666789999998764
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ + ++|++|++++| |..+.+.|+++|+++||++|++++||. .++.+....|.++|+|+++.|. |.|++| |
T Consensus 140 ~l~~~i-~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~-a~a~~~~~~p~~~g~Divv~S~tK~l~g~---~ 214 (389)
T PRK05968 140 AVAKAL-PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDN-SWASPVFQRPITLGVDLVIHSASKYLGGH---S 214 (389)
T ss_pred HHHHhc-ccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEEC-CCcchhccCchhcCCcEEEeeccccccCC---C
Confidence 4555 6 67899999998 778999999999999999999999953 4555555556789999999998 777643 3
Q ss_pred CCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 367 GPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 367 GP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
++.+|+++.++++++++... + ....| +..++ ..|++ ...+-+.+..+
T Consensus 215 ~~~gG~i~~~~~~~~~l~~~--------------------~----~~~~g----~~~~~---~~A~~--~l~~L~tl~~r 261 (389)
T PRK05968 215 DTVAGVVAGSKEHIARINAE--------------------A----YPYLG----AKLSP---FEAWL--LLRGLRTLPLR 261 (389)
T ss_pred CeEEEEEEECHHHHHHHHHH--------------------H----HHhCC----CCCCh---HHHHH--HHcccCcHHHH
Confidence 45568888888776554100 0 00001 00011 12222 34445567778
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEcC-C--C---------CcceEEEecCC---HHHHHHHHHHcCceee-----e-----
Q 001989 447 AQRVHGLAGTFALGLKKLGTVEVQG-L--P---------FFDTVKVKCAD---AHAIASAAYKIEMNLR-----V----- 501 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~~~~-~--~---------~~~~~~~~~~~---~~~v~~~L~~~GI~~~-----~----- 501 (985)
.++..+++.++++.|+++.+++.+. + + +...|+|..++ +.++.++|...++-++ .
T Consensus 262 ~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~~~~~~f~~~L~~~~~~~s~G~~~slv~p~ 341 (389)
T PRK05968 262 MKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFREGIDVRAFADALKLFRLGVSWGGHESLVVPA 341 (389)
T ss_pred HHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECCHHHHHHHHHhCCccEEecCCCCCCceeeeC
Confidence 8888899999999999885465432 1 1 12257777653 6677788866554211 0
Q ss_pred -----------------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 -----------------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 -----------------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.++.+|+|++..++++=|+.|-++|..
T Consensus 342 ~~~~~~~~~~~~~~~~gi~~~liR~SvGlE~~~dl~~dl~~al~~ 386 (389)
T PRK05968 342 EVVLQQKAQPNSAARFGVSPRSVRLHVGLEGTEALWADLEQALAA 386 (389)
T ss_pred cccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHH
Confidence 0146899999999888778888888763
No 220
>PRK06207 aspartate aminotransferase; Provisional
Probab=99.71 E-value=2.1e-15 Score=175.51 Aligned_cols=305 Identities=14% Similarity=0.146 Sum_probs=193.6
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--c-cceecCcH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--S-FSLQPNAG-AAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~-~~~~~~sG-a~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+.+.+++++.+|.+ . ..+..++| +++...+ ++.+. .++|+|+++++.|..+...++..|.+
T Consensus 78 ~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~---~~~l~-----~~Gd~Vlv~~P~y~~~~~~~~~~g~~ 149 (405)
T PRK06207 78 RGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLA---VAATV-----ARGDKVAIVQPDYFANRKLVEFFEGE 149 (405)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHH---HHHhc-----CCCCEEEEeCCCchhHHHHHHHcCCE
Confidence 576777778888888888853 3 44444444 4454333 33221 47899999988887777778899999
Q ss_pred EEEEcCC-----CCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-c
Q 001989 704 IVSVGTD-----AKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-V 774 (985)
Q Consensus 704 vv~v~~d-----~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~ 774 (985)
++.++++ .+..+|+++|+++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++++|.++..-. .
T Consensus 150 v~~v~~~~~~~~~~~~~d~~~l~~~~~---~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~ 226 (405)
T PRK06207 150 MVPVQLDYLSADKRAGLDLDQLEEAFK---AGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYD 226 (405)
T ss_pred EEEEeccccCcccCCCcCHHHHHHhhh---hcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccC
Confidence 9999875 246799999999997 67889999999 57999862 48889999999999999999874211 1
Q ss_pred C--CCCCCccCCc----EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 775 G--LTSPGYIGAD----VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 775 ~--l~~pg~~g~D----i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
+ ......+..| +++.|++|+|++| |.++|++++++++...+.... ....++.+...
T Consensus 227 ~~~~~~~~~~~~~~~~vi~i~SfSK~~~lp----GlRiG~ii~~~~l~~~~~~~~--------------~~~~~~~~~~~ 288 (405)
T PRK06207 227 GTSYTHLRALPIDPENVITIMGPSKTESLS----GYRLGVAFGSPAIIDRMEKLQ--------------AIVSLRAAGYS 288 (405)
T ss_pred CCCCCchhcCCCCcCcEEEEecchhhccCc----ccceEEEEcCHHHHHHHHHHH--------------hHhccCCCHHH
Confidence 1 1111111112 6788889998665 678999998876654432100 00011111111
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~ 928 (985)
+. ++..++.. +..-+.+..++..++++++.+.|++...+.+..+.+..+ +.++++. .+.+..+++++|.
T Consensus 289 q~----a~~~~l~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~f--l~~~l~~----~~~~~~~~~~~l~ 357 (405)
T PRK06207 289 QA----VLRTWFSE-PDGWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQAGSY--LFPRLPR----LAVSLHDFVKILR 357 (405)
T ss_pred HH----HHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEE--EEEeCcc----cCCCHHHHHHHHH
Confidence 11 11222321 212244555556667788888887521222222222222 3455541 1246788999997
Q ss_pred -HCCCccCCC-CC--CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 929 -DYGFHGPTM-SW--PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 929 -~~Gi~~~~~-~~--p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
++||.+... .| +.++++||++.. +.++++. .++.|.+.+++.|+
T Consensus 358 ~~~gV~v~pG~~F~~~~~~~~Ris~~~--~~~~l~~--al~rl~~~l~~~~~ 405 (405)
T PRK06207 358 LQAGVIVTPGTEFSPHTADSIRLNFSQ--DHAAAVA--AAERIAQLIERYRA 405 (405)
T ss_pred HhcCEEEeCchHhCCCCCCeEEEEecC--CHHHHHH--HHHHHHHHHHHhhC
Confidence 679986532 22 235899999985 6888888 77888888876653
No 221
>PRK06062 hypothetical protein; Provisional
Probab=99.71 E-value=1.4e-15 Score=178.43 Aligned_cols=330 Identities=15% Similarity=0.135 Sum_probs=199.9
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air~ 670 (985)
..||++++.+..+...+......+...++. +...++.+.|++++..+ ...++.+||++|++++++.+|.
T Consensus 65 ~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~----------~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~ 134 (451)
T PRK06062 65 TNIGHQHPKVVAAIQEQAARLCTVAPAHAN----------DARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARL 134 (451)
T ss_pred hcCCCCCHHHHHHHHHHHHhcCCcCCccCC----------HHHHHHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHH
Confidence 458988887776655543222222111111 22346778888887432 2356789999999999999987
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc-----------EEEEEcCCCCC------CCC-------HHHHHHHHH
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCGM-----------KIVSVGTDAKG------NIN-------IEELRKAAE 725 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~-----------~vv~v~~d~~g------~iD-------~e~L~~~i~ 725 (985)
| +++.+||. ...+||....+....|- .+..++..... ..| +++|+++++
T Consensus 135 ~------tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~ 208 (451)
T PRK06062 135 H------TGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIE 208 (451)
T ss_pred h------hCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHH
Confidence 6 23556765 66899988666543221 12223221111 123 678888886
Q ss_pred hc-CCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCC
Q 001989 726 AN-RDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNL 791 (985)
Q Consensus 726 ~~-~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~ 791 (985)
.. .+++++|+++-. ...|++. + +++|.++|+++|+++|+|+++. |+.+.|.+ .+|+++++
T Consensus 209 ~~~~~~iAaviiEPv~g~gG~~~-p~~~yl~~lr~lc~~~g~lLI~DEV~t----GfGRtG~~~a~~~~gv~PDi~t~g- 282 (451)
T PRK06062 209 LEGPSTIAAILLESVPGTAGILV-PPPGYLAGVRELCDRHGIVLIADEVMA----GFGRTGKWFAIEHFGVVPDLITFA- 282 (451)
T ss_pred hcCCCceEEEEEccccCCCCccc-CCHHHHHHHHHHHHHcCCEEEeecccc----CCCcCcHHHHHHhcCCCCCeeeec-
Confidence 43 256788888653 3457775 5 9999999999999999999873 34444432 37988763
Q ss_pred cccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHH
Q 001989 792 HKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTE 870 (985)
Q Consensus 792 hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~ 870 (985)
|.++ +|- |-.+ +++++++.+.+....+ ...+++.|+++.++++.+.|..+..+++.+
T Consensus 283 -K~lg----gG~~Piga-v~~~~~i~~~~~~~~~----------------~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~ 340 (451)
T PRK06062 283 -KGVN----SGYVPLGG-VAISEAIAATFADRPY----------------PGGLTYSGHPLACAAAVATINAMEEEGIVE 340 (451)
T ss_pred -hhhh----cCCcCcEE-EEEcHHHHHHhccCCC----------------CCCCCCCCCHHHHHHHHHHHHHHHhcCHHH
Confidence 7763 331 5544 4556666654421100 011235567788888889999887665443
Q ss_pred HHHHHHHHH-HHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCc-ccc-CCC-----CHHHHHHHHHHCCCccCCC
Q 001989 871 ASKIAILNA-NYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGL-KNT-AGI-----EPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 871 ~~~~~~~~a-~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~-~~~-~g~-----~~~~v~~~L~~~Gi~~~~~ 937 (985)
+..+.. .+|.++|++. ++++ ..+. + .+..+.+.-+.. +.. ... ....+.+.|.++|+++...
T Consensus 341 ---~~~~~G~~~l~~~L~~l~~~~~~v~~vrG~-G-l~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~ 415 (451)
T PRK06062 341 ---NAARIGAEVLGPGLRELAERHPSVGEVRGL-G-VFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFVN 415 (451)
T ss_pred ---HHHHHHHHHHHHHHHHHHhcCCcEEeEecc-c-cEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEEeec
Confidence 445555 4677777642 2321 1121 2 221222211100 000 000 1347888899999986421
Q ss_pred CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 938 SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 938 ~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.+.+|++|+..+|++|||+ +++++++++..++.
T Consensus 416 ----~~~lrl~ppl~~t~~eid~--~~~~l~~~l~~~~~ 448 (451)
T PRK06062 416 ----GNRIHVVPPCTVTEDEVRE--GLAILDAALAVADA 448 (451)
T ss_pred ----CCEEEEECCccCCHHHHHH--HHHHHHHHHHHhhh
Confidence 4789999999999999999 88999999887653
No 222
>PLN02263 serine decarboxylase
Probab=99.71 E-value=8.7e-15 Score=168.57 Aligned_cols=283 Identities=14% Similarity=0.103 Sum_probs=191.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCCc--ceeeccchHHHHHHHH-HHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001989 208 GRLESLLNFQTMIADLTGLPMS--NASLLDEGTAAAEAMA-MCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 208 g~l~~i~e~q~~ia~L~g~~~~--~~sl~~~~ta~~ea~~-~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~ 284 (985)
++.+...+.-+++++|+|.+.. ...+++|||.+.-..+ .|+... ++..|++|+..|.|+.+.++. .|++++
T Consensus 130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~--~~~vvy~S~~aH~Sv~KAa~l----lgi~~~ 203 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVF--PDGILYASRESHYSVFKAARM----YRMECV 203 (470)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhc--CCcEEEEcCCccHHHHHHHHh----cCCcce
Confidence 4566777788999999999753 5778888885433322 233221 344789999999999999754 577777
Q ss_pred EeCc--------hhhhc-cCCC---EeEEEEEcC-CCCeeeccHHHHHHHHHhCCc-----EEEEEecCccccC--CCC-
Q 001989 285 VSDL--------KDIDY-KSGD---VCGVLVQYP-GTEGEVLDYGDFIKNAHANGV-----KVVMATDLLALTI--LKP- 343 (985)
Q Consensus 285 ~v~~--------~~l~~-l~~~---t~~V~v~~p-n~~G~v~di~~I~~~a~~~ga-----lliV~a~~~~lg~--l~~- 343 (985)
.++. ++|++ +..+ ...|+.+.+ +.+|.++||++|+++|+++|+ +++||+-..+.-+ +..
T Consensus 204 ~Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~ 283 (470)
T PLN02263 204 KVDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRA 283 (470)
T ss_pred EeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccc
Confidence 7764 45665 5433 456666776 579999999999999999997 9999652212111 111
Q ss_pred ---CCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 344 ---PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 344 ---~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
....++|-+..++ |+++.|++ +|++.+|++.++.+... ..|.- .+...+ .|+-+
T Consensus 284 ~~~df~~~vDSIsvD~HK~l~~P~~-----cgvll~R~~~~~~~~~~-----------~~Yl~---~~d~ti---~gSR~ 341 (470)
T PLN02263 284 PKVTFKKPIGSVSVSGHKFVGCPMP-----CGVQITRMEHINVLSSN-----------VEYLA---SRDATI---MGSRN 341 (470)
T ss_pred cccCCCcCccEEEECCccccCCCcC-----EEEEEEehhhHhhhccC-----------hHhhC---CCCCCc---CCCCC
Confidence 1233489999999 66677864 67888887665433110 00100 000000 11111
Q ss_pred ccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCCHHHHHHHHHHcCcee
Q 001989 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNL 499 (985)
Q Consensus 420 i~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~GI~~ 499 (985)
+..++.....+..+|.+|++++.+++.++|+|+.++|++.| ++++..|...+|+|..+... +..+||.+
T Consensus 342 -----g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~g-~~~~~~p~s~~V~f~~p~~~-----~~~~gW~L 410 (470)
T PLN02263 342 -----GHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREAG-ISAMLNELSSTVVFERPKDE-----EFVRRWQL 410 (470)
T ss_pred -----cHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCC-CeEEeCCCceEEEEecCchH-----HhhcceEE
Confidence 11122222236899999999999999999999999999997 77775566677888765321 23478988
Q ss_pred eeecCCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001989 500 RVVDSNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 500 ~~~~~~~lris~t~~~t~edId~li~aL~~~ 530 (985)
... +..++++++...|++.+|+|++.|.+.
T Consensus 411 ~~~-~~~~Hivvmphv~~~~id~fi~DL~~~ 440 (470)
T PLN02263 411 ACQ-GNIAHVVVMPSVTIEKLDYFLKELVEK 440 (470)
T ss_pred ccC-CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 763 467999999999999999999999865
No 223
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=99.71 E-value=1.1e-16 Score=178.00 Aligned_cols=165 Identities=20% Similarity=0.207 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
+.++++.+++++|.+.+.+.++++++|+.++++++. .++++|++++..|.++...+...|+++++++++.+
T Consensus 61 i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~--------~~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~ 132 (294)
T cd00615 61 IKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVC--------GPGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNP 132 (294)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcC--------CCCCEEEEeCCchHHHHHHHHHCCCEEEEecCccCc
Confidence 678999999999998766656777777765555432 47899999999898887778889999999977533
Q ss_pred -----CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccc--cC-CC-CCCccC
Q 001989 713 -----GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ--VG-LT-SPGYIG 783 (985)
Q Consensus 713 -----g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~--~~-l~-~pg~~g 783 (985)
+.+|+++++++++++ +++++|++++||++|.+. |+++|+++||++|++++||++|.... .+ +. ....++
T Consensus 133 ~~~~~~~i~~~~l~~~l~~~-~~~k~v~l~~p~~~G~~~-dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~ 210 (294)
T cd00615 133 YYGIAGGIPPETFKKALIEH-PDAKAAVITNPTYYGICY-NLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAG 210 (294)
T ss_pred ccCcCCCCCHHHHHHHHHhC-CCceEEEEECCCCCCEec-CHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcC
Confidence 479999999999742 578999999999999998 89999999999999999999985211 11 11 123468
Q ss_pred CcEEEeCCcccccccCCCCCC-ceEEEEEccc
Q 001989 784 ADVCHLNLHKTFCIPHGGGGP-GMGPIGVKKH 814 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGP-g~G~i~~~~~ 814 (985)
+|+++.|+||++ +|| ++|++.+++.
T Consensus 211 ~div~~S~hK~l------~g~~~~~~l~~~~~ 236 (294)
T cd00615 211 ADIVVQSTHKTL------PALTQGSMIHVKGD 236 (294)
T ss_pred CcEEEEchhccc------chHhHHHHHHhCCC
Confidence 999999999997 344 4567766654
No 224
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=99.71 E-value=2.2e-15 Score=173.10 Aligned_cols=215 Identities=22% Similarity=0.208 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch-
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK- 289 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~- 289 (985)
....++++.+|+++|.+. +.++++|++++.+++.++ . ++||+|+++...|......+...++..|++++++|.+
T Consensus 40 p~~~~le~~la~l~g~~~--a~~~~sG~~Ai~~~l~~l-~--~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d 114 (369)
T cd00614 40 PTVDALEKKLAALEGGEA--ALAFSSGMAAISTVLLAL-L--KAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDPDD 114 (369)
T ss_pred hhHHHHHHHHHHHHCCCC--EEEEcCHHHHHHHHHHHH-c--CCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeCCCC
Confidence 344567889999999865 678889998888777665 2 3899999999999998887776666789999998764
Q ss_pred --hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCC
Q 001989 290 --DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMG 364 (985)
Q Consensus 290 --~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~ 364 (985)
++++ +++++++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|.++|+|++++|. |.++++
T Consensus 115 ~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD-~t~~~~~~~~~~~~g~Divv~S~tK~l~g~-- 191 (369)
T cd00614 115 PEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVD-NTFATPYLQRPLELGADIVVHSATKYIGGH-- 191 (369)
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEE-CCCcchhcCChhhhCCcEEEeccceeccCC--
Confidence 4555 7788999999988 78999999999999999999999994 46666666667789999999998 777532
Q ss_pred CCCCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchH
Q 001989 365 YGGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGL 443 (985)
Q Consensus 365 ~GGP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl 443 (985)
|..-+|++.+++ ++.+++.. .++.-|+ .. ++. .+ |+...+-+.+
T Consensus 192 -~~~~gG~v~~~~~~l~~~l~~-------------------------~~~~~g~-~~---~p~---~a--~~~l~~l~tl 236 (369)
T cd00614 192 -SDVIAGVVVGSGEALIQRLRF-------------------------LRLALGT-IL---SPF---DA--WLLLRGLKTL 236 (369)
T ss_pred -CCceEEEEEeCcHHHHHHHHH-------------------------HHHhhCC-CC---CHH---HH--HHHHcCCCCH
Confidence 223368888876 66554410 0011111 01 122 11 1234445667
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeE
Q 001989 444 KTIAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 444 ~~i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
....++..+++.+++++|++.++++
T Consensus 237 ~~r~~~~~~na~~la~~L~~~~~v~ 261 (369)
T cd00614 237 PLRMERHSENALKVAEFLEKHPKVE 261 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 7788889999999999999986454
No 225
>PRK06105 aminotransferase; Provisional
Probab=99.71 E-value=1.8e-15 Score=177.81 Aligned_cols=356 Identities=16% Similarity=0.167 Sum_probs=210.8
Q ss_pred HHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc-
Q 001989 571 HELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS- 649 (985)
Q Consensus 571 ~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~- 649 (985)
.+..+|++..++-. ...||++++.+..+...+....+.+.....+. .+...++.+.|++++..+.
T Consensus 45 ~dG~~ylD~~~g~~------~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~--------~~~~~~lae~L~~~~p~~~~ 110 (460)
T PRK06105 45 DAGKRYIEGMAGLW------SVALGFSEQRLVEAAARQMKKLPFYHTFSHKS--------HGPVIDLAEKLVAMAPVPMS 110 (460)
T ss_pred CCCCEEEEcchhHH------hccCCCCCHHHHHHHHHHHHhCCCeecccccC--------CHHHHHHHHHHHHhCCCCCC
Confidence 34455555544322 24588887777666554432221111111111 1234478888988875432
Q ss_pred cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCCCCC--
Q 001989 650 FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDAKGN-- 714 (985)
Q Consensus 650 ~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~~g~-- 714 (985)
..++.+||++|++++++.+|.|...++..++.+||. ...+||....+....| ..+..+|......
T Consensus 111 ~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 190 (460)
T PRK06105 111 KVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFG 190 (460)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccc
Confidence 346779999999999999987754555334566775 6789997754422111 1233333311000
Q ss_pred -----------CCHHHHHHHHHhc-CCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCCC
Q 001989 715 -----------INIEELRKAAEAN-RDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLT 777 (985)
Q Consensus 715 -----------iD~e~L~~~i~~~-~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~ 777 (985)
..++++++++.+. .+++++|+++-. ...|++. + +++|.++|+++|+++|+|+++ .|++
T Consensus 191 ~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~-~~~~yl~~lr~lc~~~~~llI~DEv~----tG~G 265 (460)
T PRK06105 191 LPGESEEAFATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIV-PPKTYWEKIQAVLRKYDILLVADEVI----CGFG 265 (460)
T ss_pred cCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCcc-CCHHHHHHHHHHHHHcCCeEEEeccc----cCCC
Confidence 1246778877532 357888888753 3456665 4 899999999999999999887 3333
Q ss_pred CCCcc--------CCcEEEeCCcccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 778 SPGYI--------GADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 778 ~pg~~--------g~Di~~~s~hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
+.|.+ -+|+++++ |.++ +|. | +|.+++++++.+.+.... . ........+++.|
T Consensus 266 RtG~~f~~~~~~v~PDi~~~g--K~lg----gG~~P-~~av~~~~~i~~~~~~~~-~----------~~~~~~h~~T~~g 327 (460)
T PRK06105 266 RTGNMFGCETFGIKPDILVMS--KQLS----SSYQP-LSAVLMNEKVYDPIADES-G----------KIGTFGHGFTASG 327 (460)
T ss_pred cCchhhhHHhcCCCCCeeeee--cccc----cCccc-ceEEEEcHHHHHHHhccc-c----------cCcccccCCCCCC
Confidence 44322 37888764 7663 332 5 455556766655432110 0 0000011234566
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc--CCee--ecCCCCceeeEEEEEecCccc-cCC-----C
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLRGLKN-TAG-----I 918 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g--~~l~--~~~~~~~~~~~~iv~~~~~~~-~~g-----~ 918 (985)
+++.++++.+.|..+.++++ .++..++.++|.++|++. ++++ +.+. + .+. .+.+..-.. ... .
T Consensus 328 npl~~aaa~a~L~~i~~~~l---~~~v~~~g~~l~~~L~~l~~~~~v~~vrG~-G-l~~--gie~~~~~~~~~~~~~~~~ 400 (460)
T PRK06105 328 HPVAAAVALENLAIIEERDL---VGNAAERGARLQARLRALADHPLVGEVRGV-G-LIA--AVELVADKATKTPFEPPGK 400 (460)
T ss_pred CHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHHhhcCCCeEEEEec-c-eEE--EEEEecCcccCCCCCchhH
Confidence 78888888888988877654 446677888888888752 2221 1121 1 221 222210000 000 0
Q ss_pred CHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 919 EPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 919 ~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
....+.+.+.++|+++... .+.+|++|+...|++|||+ +++++.+++.+++.
T Consensus 401 ~a~~i~~~~~~~Gvl~~~~----g~~i~l~Ppl~it~~eid~--~~~~l~~~l~~~~~ 452 (460)
T PRK06105 401 VGARANAAAHEHGVISRAM----GDTLAFCPPLIITAAQVDE--MVDRFGRALDDVAA 452 (460)
T ss_pred HHHHHHHHHHHCCeEEEec----CCEEEEECCCccCHHHHHH--HHHHHHHHHHHHHH
Confidence 1346788888999988543 3689999999999999999 78899888877643
No 226
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.71 E-value=1.4e-15 Score=176.90 Aligned_cols=329 Identities=12% Similarity=0.125 Sum_probs=199.5
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air~ 670 (985)
..||++++.+..+...+.............. +...++.+.++++++.. ...++.+||++|++++++.+|.
T Consensus 52 ~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~---------~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~ 122 (422)
T PRK05630 52 AAHGHGHPRLKAAAHKQIDTMSHVMFGGLTH---------EPAIKLTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKMALQ 122 (422)
T ss_pred hcCCCCCHHHHHHHHHHHHhCCCcccCCcCC---------HHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHH
Confidence 4578887777665544432211111101111 12346778888887432 2356789999999999999998
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC-------------cEEEEEcCCCCCCCC-------HHHHHHHHHhcCC
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCG-------------MKIVSVGTDAKGNIN-------IEELRKAAEANRD 729 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G-------------~~vv~v~~d~~g~iD-------~e~L~~~i~~~~~ 729 (985)
|...+|..++.+||. ..++||....+....+ ..+..+|.......+ .+.+++.+. +
T Consensus 123 ~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~ 199 (422)
T PRK05630 123 YSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLID---E 199 (422)
T ss_pred HHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHHh---h
Confidence 865445334566765 7789997655443221 122334432111112 244555555 6
Q ss_pred CEEEEEEEcC--CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCccccc
Q 001989 730 NLSTLMVTYP--STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLHKTFC 796 (985)
Q Consensus 730 ~t~~Vvv~~p--n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~hK~l~ 796 (985)
++++|+++-. ...|++.+ .+++|.++|+++|+++|+|+++ .|+.+.|.+ .+|++++ .|.++
T Consensus 200 ~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~----tG~GrtG~~~a~~~~gv~PDi~t~--gK~l~ 273 (422)
T PRK05630 200 TVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIA----TGFGRTGELFATLAAGVTPDIMCV--GKALT 273 (422)
T ss_pred ceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecce----eCCCcCchhhHHHhcCCCCCeeee--echhh
Confidence 8899988752 23465532 5899999999999999999987 333444432 3688865 37663
Q ss_pred ccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 001989 797 IPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAI 876 (985)
Q Consensus 797 ~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~ 876 (985)
+|-+-+|.+++++++.+.+.... +. .. ....+++.|++..++++.+.|+.+.++.+ .++..
T Consensus 274 ----gG~~p~~av~~~~~i~~~~~~~~-~~----------~~-~~h~~T~~g~Pla~aaa~aaL~~l~~~~~---~~~~~ 334 (422)
T PRK05630 274 ----GGFMSFAATLCTDKVAQLISTPN-GG----------GA-LMHGPTFMANPLACAVAHASLEIIETGMW---RKQVK 334 (422)
T ss_pred ----cCccccceeeccHHHHHHHhccC-CC----------Cc-cccCCCCcCCHHHHHHHHHHHHHHHhCcH---HHHHH
Confidence 23244566777877665442110 00 00 01123455677888888888888876644 34666
Q ss_pred HHHHHHHHHhhcc--CCee--ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCC
Q 001989 877 LNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTES 952 (985)
Q Consensus 877 ~~a~~l~~~L~~g--~~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~ 952 (985)
++.++|++.|++. ...+ +.+. + .+ +-+.+.. ......+.+.+.++|+++... .+.+|+.|+..
T Consensus 335 ~~g~~l~~~L~~l~~~~~v~~vRg~-G-l~--~~ie~~~-----~~~~~~~~~~~~~~Gl~~~~~----g~~l~~~PpL~ 401 (422)
T PRK05630 335 RIEAELIAGLSPLAHLPGVADVRVL-G-AI--GVVEMEQ-----PVDMEEATQAAVDHGVWLRPF----GRLVYVMPPYI 401 (422)
T ss_pred HHHHHHHHHHHHhhcCCCeeeeecc-c-cE--EEEEECC-----cccHHHHHHHHHHCCeEEEec----CCEEEEECCcc
Confidence 7778888877641 1111 1111 1 12 2233321 123568889999999988543 37899999999
Q ss_pred CCHHHHHHHHccCChhHHHH
Q 001989 953 ESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 953 ~t~eeId~~~~~~~l~~~~~ 972 (985)
.|++|||+ ++++|++++.
T Consensus 402 it~~~i~~--~~~~l~~al~ 419 (422)
T PRK05630 402 TTSEQIAQ--ICAALAAAVK 419 (422)
T ss_pred CCHHHHHH--HHHHHHHHHh
Confidence 99999999 7788888775
No 227
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=99.71 E-value=2.5e-15 Score=176.24 Aligned_cols=330 Identities=15% Similarity=0.155 Sum_probs=201.6
Q ss_pred ccccccccCCCccccccccccccccc-cCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~-~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air 669 (985)
..||++++.+..+...+......... +++ . +...++.+.|+++++.+ ...++.+||++|++++++.+|
T Consensus 65 ~~lGh~~p~i~~Ai~~ql~~~~~~~~~~~~-~---------~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr 134 (457)
T PRK05639 65 ASTGYSHPKLVKAVQEQVALIQHSMIGYTH-S---------ERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSK 134 (457)
T ss_pred hccCCCCHHHHHHHHHHHHhccccccCccC-C---------HHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHH
Confidence 45788877776655544322111111 111 1 12346788888887643 245778999999999999988
Q ss_pred HHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC--------c-----EEEEEcCCCCCC--------CCH--------HH
Q 001989 670 AYHKARGDHHRNVCII-PVSAHGTNPATAAMCG--------M-----KIVSVGTDAKGN--------INI--------EE 719 (985)
Q Consensus 670 ~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G--------~-----~vv~v~~d~~g~--------iD~--------e~ 719 (985)
.| +++.+||. ...+||....+....| + .++.+|.+...+ .|. +.
T Consensus 135 ~~------tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (457)
T PRK05639 135 FS------TRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDY 208 (457)
T ss_pred Hh------cCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHH
Confidence 76 24556775 6689998765543221 1 244555532111 122 23
Q ss_pred HHHHHHh---cCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CC
Q 001989 720 LRKAAEA---NRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GA 784 (985)
Q Consensus 720 L~~~i~~---~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~ 784 (985)
+++.+.. ..+++++|+++-. ...|++.+ -+++|.++|+++|+++|+|+++. |+.+.|.+ .+
T Consensus 209 le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~t----G~GrtG~~~a~~~~gv~P 284 (457)
T PRK05639 209 LENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQT----GIGRTGKWFASEWFEVKP 284 (457)
T ss_pred HHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh----ccCcCchHHHHHhcCCCC
Confidence 5554422 2367889988643 34466542 38999999999999999999874 34445432 37
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
|++++ .|.++ +| -.+|.+++++++.+...+.. . +++.|+++.++++.+.|..+.
T Consensus 285 Div~~--gK~l~----gG-~pi~av~~~~~i~~~~~~~~------------------~-~T~~g~p~~~aaa~a~l~~l~ 338 (457)
T PRK05639 285 DLIIF--GKGVA----SG-MGLSGVIGRKELMDLTSGSA------------------L-LTPAANPVISAAAEATLEIIE 338 (457)
T ss_pred CEEEe--chhhc----CC-CcceeEEehHHHHhhcCCCc------------------c-cCCCcCHHHHHHHHHHHHHHH
Confidence 99885 37764 33 34677788887766322110 0 123456677777888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc---cCCee--ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC
Q 001989 865 SKGLTEASKIAILNANYMAKRLEK---HYPIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~---g~~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~ 939 (985)
.+++. ++..++.++|+++|++ .++++ +.+. + .+..+.+..+. ..........+.+.|.++|+++.....
T Consensus 339 ~~~l~---~~~~~~g~~l~~~L~~l~~~~~~~~~VrG~-G-l~~gve~~~~~-~~~~~~~~~~~~~~~~~~Gv~~~~~g~ 412 (457)
T PRK05639 339 EENLL---KNALKVGEFIKKRLLEMKESFEVIGDVRGK-G-LMIGVEIVKEN-GKPDPELTGKICWRAFELGLILPSYGM 412 (457)
T ss_pred HccHH---HHHHHHHHHHHHHHHHHHHhCCCEEeeccc-e-eEEEEEEecCC-CCCCHHHHHHHHHHHHhCCeEEeecCC
Confidence 66543 4556678888888875 23432 1121 1 22112111110 000001135678888999999854421
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 940 PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 940 p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
..+.||++|+..+|++|||+ ++++|++++..+..
T Consensus 413 -~~~~lr~~Ppl~it~~~id~--~~~~l~~~l~~~~~ 446 (457)
T PRK05639 413 -FGNVIRITPPLVITKEIAEK--GLEIMERAIKDALA 446 (457)
T ss_pred -CCCEEEEeCCCccCHHHHHH--HHHHHHHHHHHHHH
Confidence 14799999999999999999 88999999877643
No 228
>PRK09028 cystathionine beta-lyase; Provisional
Probab=99.71 E-value=2e-15 Score=173.05 Aligned_cols=212 Identities=19% Similarity=0.229 Sum_probs=156.9
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|+|.|.+ ++.++.+|++++.++++++ +. +||+||+++..|+.+...+....+.+|+++.+++. ++
T Consensus 64 ~~Le~~iA~le~~~--~~~~~~sG~~Ai~~~l~al-l~--~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~~~e~ 138 (394)
T PRK09028 64 FAFQAAIVELEGGA--GTALYPSGAAAISNALLSF-LK--AGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPMIGEG 138 (394)
T ss_pred HHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHH-hC--CCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCCCHHH
Confidence 35778999999875 4789999999888877765 33 89999999999988887665445668999998875 45
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++++| |++|.+.|+++|+++||++|++++|| +.++.+....|.++||||++.|+ |++++| |.
T Consensus 139 l~~~l~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD-~t~a~p~~~~Pl~~GaDivv~S~tK~l~Gh---~d 214 (394)
T PRK09028 139 IRELIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLD-NTWASPINSRPFEMGVDISIQAATKYIVGH---SD 214 (394)
T ss_pred HHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEE-CCccccccCCccccCceEEEEeCCeEecCC---CC
Confidence 766 8889999999998 78999999999999999999999994 46666777788999999999999 777643 22
Q ss_pred CcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHH
Q 001989 368 PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIA 447 (985)
Q Consensus 368 P~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~ 447 (985)
--.|.++.++++.+++- . .++.-|. | .++. ..|+...|-+-|.-+.
T Consensus 215 ~~~G~~~~~~~~~~~l~--------~-----------------~~~~~G~---~-~~p~-----~a~l~~rgl~TL~lR~ 260 (394)
T PRK09028 215 VMLGTATANEKHWDQLR--------E-----------------HSYLMGQ---C-TSPD-----DVYLAMRGLRTLGVRL 260 (394)
T ss_pred EEEEEEECCHHHHHHHH--------H-----------------HHHhcCC---C-CCHH-----HHHHHHcccCcHHHHH
Confidence 22465555555443320 0 0011110 0 0111 1245666777788888
Q ss_pred HHHHHHHHHHHHHHhcCCCeE
Q 001989 448 QRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 448 ~~~~~~a~~l~~~L~~~g~~~ 468 (985)
++..++|..+++.|++.+.++
T Consensus 261 ~~~~~na~~la~~L~~~p~v~ 281 (394)
T PRK09028 261 AQHEKNALKVANWLATRPEVD 281 (394)
T ss_pred HHHHHHHHHHHHHHhcCCCcc
Confidence 999999999999999885343
No 229
>PRK07324 transaminase; Validated
Probab=99.71 E-value=1.9e-15 Score=173.88 Aligned_cols=292 Identities=14% Similarity=0.137 Sum_probs=180.3
Q ss_pred HHHHHHHHHhC-CCccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 636 NLGEWLCTITG-FDSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 636 e~~~~la~l~G-~~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
++++.++++++ .+..++.. +++++|+..++.++ . .++|+|+++.+.|..+...++..|++++.+|++.+
T Consensus 66 ~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l---~-----~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~ 137 (373)
T PRK07324 66 EFKEAVASLYQNVKPENILQTNGATGANFLVLYAL---V-----EPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEEN 137 (373)
T ss_pred HHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHh---C-----CCCCEEEEcCCCchhHHHHHHHcCCEEEEEeccccc
Confidence 56777888764 55545444 44455554333322 1 47889999988887777778899999999998653
Q ss_pred -CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccC---HHHHHHHHHHcCCEEEEEccccc-cccC-CCCCCc-cCC
Q 001989 713 -GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG---IDEICKIIHDNGGQVYMDGANMN-AQVG-LTSPGY-IGA 784 (985)
Q Consensus 713 -g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d---i~eI~~la~~~galliVD~a~~~-~~~~-l~~pg~-~g~ 784 (985)
+.+|+++++++++ +++++|++++|+ ++|.+. + +++|+++|+++|+++++|+++.. ...+ ...... ..-
T Consensus 138 ~~~~d~~~l~~~~~---~~~kli~i~~p~NPtG~~~-~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~ 213 (373)
T PRK07324 138 GWLPDLDELRRLVR---PNTKLICINNANNPTGALM-DRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEK 213 (373)
T ss_pred CCCCCHHHHHHhCC---CCCcEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCC
Confidence 4689999999887 789999999994 799886 5 89999999999999999998631 1111 101111 112
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
.|.+.|++|+|++| |.++|++++++++.+.+... + ....++.+...+ .++...+.. .
T Consensus 214 ~I~~~s~SK~~~~~----G~RiG~i~~~~~li~~~~~~------------~--~~~~~~~~~~~q----~~a~~~l~~-~ 270 (373)
T PRK07324 214 GISTNSMSKTYSLP----GIRVGWIAANEEVIDILRKY------------R--DYTMICAGVFDD----MLASLALEH-R 270 (373)
T ss_pred EEEEecchhhcCCc----cceeEEEecCHHHHHHHHHH------------h--CcEEecCChHHH----HHHHHHHcC-H
Confidence 46777889988654 78899999887665443211 0 001112111111 112222221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCCCccCC-CCCCCC
Q 001989 865 SKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYGFHGPT-MSWPVP 942 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~Gi~~~~-~~~p~~ 942 (985)
.+-+++..+...++.+.+.+.|++...+....+.+..+ +.+.++ .+.+..+++++|. ++|+.+.. ..|..+
T Consensus 271 ~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~--~~i~~~-----~~~~~~~~~~~ll~~~gv~v~pg~~F~~~ 343 (373)
T PRK07324 271 DAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVST--SFVKLD-----VDMPSEDFCLKLLKETGVLLVPGNRFDLE 343 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCCceEE--EEEEeC-----CCCCHHHHHHHHHHhcCEEEECccccCCC
Confidence 12233333445566677777776521221112222222 234443 1356788999875 67988643 334556
Q ss_pred CEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 943 GTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 943 ~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+++||++.. +++.+++ .++.|++.+++
T Consensus 344 ~~iRis~~~--~~~~l~~--~l~rl~~~l~~ 370 (373)
T PRK07324 344 GHVRIGYCC--DTETLKK--GLKKLSEFLRE 370 (373)
T ss_pred CeEEEEecC--CHHHHHH--HHHHHHHHHHh
Confidence 899999864 5788888 66777776654
No 230
>PLN02590 probable tyrosine decarboxylase
Probab=99.71 E-value=5.9e-15 Score=174.26 Aligned_cols=360 Identities=12% Similarity=0.072 Sum_probs=215.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCc-c--ceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHH
Q 001989 139 MKFSKFDEGLTESQMIEHMQKLASMNKV-Y--KSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLN 215 (985)
Q Consensus 139 ~~lp~~~~~~se~e~~~~~~~l~~~n~~-~--~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e 215 (985)
..+| ..+.+-.++++++.+.-..... + ..|.|-=.-+...++.+.+-+.+ .| .-..+.-+.+.+..++..+
T Consensus 101 ~~~P--~~g~~~~~il~~~~~~i~p~~~~~~hP~f~a~~~~~~~~~~~lgd~l~s--a~--n~~~~~~~~sPa~t~lE~~ 174 (539)
T PLN02590 101 DSAP--ERPESLKELLDDVSKKIMPGITHWQSPSYFAYYASSTSVAGFLGEMLNA--GL--SVVGFTWLTSPAATELEII 174 (539)
T ss_pred CCCC--CCCCCHHHHHHHHHHHHhccCCcCCCCCeeEeccCCCcHHHHHHHHHHH--hc--ccccCCcccCchhHHHHHH
Confidence 3456 4567888999999876544321 1 12222211011133444432222 11 1122333456666777778
Q ss_pred HHHHHHHhcCCCC-------cceeeccchHHHHHHHH-HHhhhh-c--C----CCCEEEEcCCCChhHHHHHHHhhcCCC
Q 001989 216 FQTMIADLTGLPM-------SNASLLDEGTAAAEAMA-MCNNIQ-K--G----KKKTFIIASNCHPQTIDICITRADGFD 280 (985)
Q Consensus 216 ~q~~ia~L~g~~~-------~~~sl~~~~ta~~ea~~-~a~~~~-~--~----~g~~Vlv~~~~H~s~~~~~~~~a~~~g 280 (985)
.-.++++|+|++. ....+++|||.+.-.++ .|+... + + ++-.|++++..|.|+.+.++.+ +.|
T Consensus 175 vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~il--Glg 252 (539)
T PLN02590 175 VLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACLIG--GIH 252 (539)
T ss_pred HHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHHHc--CCC
Confidence 8899999999986 34667888885443333 333211 0 0 2225678999999999987643 233
Q ss_pred e-EEEEeCc----------hhhhc-cCC------CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC
Q 001989 281 I-KVVVSDL----------KDIDY-KSG------DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL 341 (985)
Q Consensus 281 i-~v~~v~~----------~~l~~-l~~------~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l 341 (985)
- .++.|+. ++|++ |.. ...+|+.+.. +.+|.++||++|+++|+++|++++||+-.-+..++
T Consensus 253 ~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG~al~ 332 (539)
T PLN02590 253 EENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACI 332 (539)
T ss_pred cccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhhhhhc
Confidence 1 2444433 34544 432 2456777776 56999999999999999999999996422111112
Q ss_pred CCC------CcccceEEEecC-ccccccCCCCCCcEEEEEEchh--hHhcC--CCceeeeeecCCC-Cc---ceeeeccc
Q 001989 342 KPP------GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQE--YKRMM--PGRIVGVSIDSSG-KP---ALRVAMQT 406 (985)
Q Consensus 342 ~~~------~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~--~~~~l--p~~~vG~t~d~~g-~~---~~~l~l~t 406 (985)
.+. +--.||-+..+. |+++.|+. +|++.++++ +.+.+ .+.++....+..+ .. .+.+.+
T Consensus 333 ~~~~r~~~~Gie~ADSit~D~HK~l~~p~~-----cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~l-- 405 (539)
T PLN02590 333 CPEYRKFIDGIENADSFNMNAHKWLFANQT-----CSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISL-- 405 (539)
T ss_pred ChhhHHHhcCCccCCEEEECchhhcCcCcC-----EEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCC--
Confidence 111 223479999999 77777864 678888863 22222 1111111000000 00 011111
Q ss_pred ccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC--
Q 001989 407 REQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-- 484 (985)
Q Consensus 407 re~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-- 484 (985)
-||.. ++...+-+..+|.+|++++.+++.++|+|+.+.|++..+|+++.++.++.|+|+...
T Consensus 406 ----sRr~r------------aLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~~ 469 (539)
T PLN02590 406 ----SRRFR------------SLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVD 469 (539)
T ss_pred ----CCchH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEEEecCCC
Confidence 13321 122122258899999999999999999999999999866999987878888887531
Q ss_pred ---------HHHHHHHHHHcCc-eeeee-c--CCeEEEEec-cCCCHHHHHHHHHHHhC
Q 001989 485 ---------AHAIASAAYKIEM-NLRVV-D--SNTVTASFD-ETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 ---------~~~v~~~L~~~GI-~~~~~-~--~~~lris~t-~~~t~edId~li~aL~~ 529 (985)
..++.++|.+.|. ++... . .-.+|+|+. +.+|++|||.+++.|.+
T Consensus 470 ~~~~~~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~ 528 (539)
T PLN02590 470 GDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQK 528 (539)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 3456666666665 34332 2 246899985 46789999999998875
No 231
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=99.71 E-value=2.8e-15 Score=175.65 Aligned_cols=331 Identities=17% Similarity=0.220 Sum_probs=201.1
Q ss_pred ccccccccCCCccccccccccccccc-cCCCCchhhhhhHHHHHHHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVI 668 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~-~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~ai 668 (985)
..||++++.+..+...+......+.. +++ . +...++.+.|++++... ...++.+||++|++++++.+
T Consensus 54 ~~lGH~~p~v~~Ai~~ql~~~~~~~~~~~~-~---------~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklA 123 (445)
T PRK08593 54 QNVGHAPPRVVEAIKAQADKFIHYTPAYMY-H---------EPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFA 123 (445)
T ss_pred hcCCCCCHHHHHHHHHHHHhccCccccccC-C---------HHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHH
Confidence 45888888777665554422222211 111 1 22447888899987533 24567799999999999988
Q ss_pred HHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc-------------EEEEEcCCCC-----CCCC-------HHHHHH
Q 001989 669 RAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM-------------KIVSVGTDAK-----GNIN-------IEELRK 722 (985)
Q Consensus 669 r~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~-------------~vv~v~~d~~-----g~iD-------~e~L~~ 722 (985)
|.|. ++.+||. ...+||....+....+. .+..+|.... +..+ ++++++
T Consensus 124 r~~t------gr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 197 (445)
T PRK08593 124 RAYT------GRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKE 197 (445)
T ss_pred HHhh------CCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHH
Confidence 8762 3456665 66899987655432221 2344554221 1112 244555
Q ss_pred HHHhc--CCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEE
Q 001989 723 AAEAN--RDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVC 787 (985)
Q Consensus 723 ~i~~~--~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~ 787 (985)
.++++ .+++++|+++.. +..|++. + +++|.++|+++|+++|+|+++. ++.+.|.+ .+|++
T Consensus 198 ~~~~~~~~~~iAavI~EPv~g~gG~~~-~~~~yl~~l~~lc~~~g~llI~DEv~t----g~GrtG~~~a~~~~gv~pDi~ 272 (445)
T PRK08593 198 MFEKYLPADEVACIVIETIQGDGGLLE-PVPGYFEALYKFCREHGILFAVDDIQQ----GLGRTGKWSSISHFNITPDLM 272 (445)
T ss_pred HHHhhcCCCceEEEEEccccCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEechhh----CCCcCchHHHHHhcCCCCCEe
Confidence 55432 357888888764 3457664 4 9999999999999999999873 23333322 26887
Q ss_pred EeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
++ .|.++ + |-.+|.+++++++.+.+.... .+ .++.|+++.++++.+.|..+..++
T Consensus 273 t~--gK~l~----~-G~p~gav~~~~~i~~~~~~~~-----------------~~-~T~~~~pl~~aaa~a~l~~l~~~~ 327 (445)
T PRK08593 273 SF--GKSLA----G-GMPMSAIVGRKEIMESLEAPA-----------------HL-FTTGANPVSCAAALATIDMIEDES 327 (445)
T ss_pred ee--ccccc----C-CcccEEEEEcHHHHhhhccCC-----------------CC-CCCCCCHHHHHHHHHHHHHHHhcc
Confidence 65 37663 3 333677778887766553110 00 123346666777778888876654
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc---CCeee--cCCCCceeeEEEEEecC-ccccCCCCHHHHHHHHHHCCCccCCCCCCC
Q 001989 868 LTEASKIAILNANYMAKRLEKH---YPILF--RGVNGTVAHEFIVDLRG-LKNTAGIEPEDVAKRLMDYGFHGPTMSWPV 941 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g---~~l~~--~~~~~~~~~~~iv~~~~-~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~ 941 (985)
+ .++..++.++|+++|++. ++++. .+. + .+..+-+.... ...........+.+.|.++|+++....
T Consensus 328 l---~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG~-G-l~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~--- 399 (445)
T PRK08593 328 L---LQRSAEKGEYARKRFDQWVSKYNFVGDVRGY-G-LSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAVA--- 399 (445)
T ss_pred H---HHHHHHHHHHHHHHHHHHHhcCCcEEEEecc-c-eEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEeccC---
Confidence 3 446667778888888652 23211 111 1 12111111100 000000123568888999999875432
Q ss_pred CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccCC
Q 001989 942 PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMGR 978 (985)
Q Consensus 942 ~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~~ 978 (985)
.+.+|++|+..+|++|||+ +++++++++..+.++.
T Consensus 400 ~~~lr~~p~l~~t~~~id~--~~~~l~~~l~~~~~~~ 434 (445)
T PRK08593 400 GNVLRFQPPLVITYEQLDT--ALNTIEQAFTALEAGK 434 (445)
T ss_pred CCEEEEECCCccCHHHHHH--HHHHHHHHHHHHhccc
Confidence 3689999999999999999 8899999998877643
No 232
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=99.71 E-value=2.7e-15 Score=175.53 Aligned_cols=334 Identities=17% Similarity=0.139 Sum_probs=204.5
Q ss_pred cccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHH
Q 001989 591 MIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air 669 (985)
...||++++.+..+...+......+...+-.. +...++.+.|+++++.. ...++.+||++|++++++.+|
T Consensus 52 ~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~---------~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr 122 (443)
T PRK08360 52 VQNVGHNNPRVVKAIKEQTDKLIHYTPIYGFP---------VEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFAR 122 (443)
T ss_pred hcccCCCCHHHHHHHHHHHHhccCccccccCc---------HHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHH
Confidence 34689888877766555542222221110001 22347788888888643 245778999999999999998
Q ss_pred HHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCCCC------------CCHHHHHHHH
Q 001989 670 AYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAKGN------------INIEELRKAA 724 (985)
Q Consensus 670 ~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~g~------------iD~e~L~~~i 724 (985)
.| +++.+|+. ...+||.........|. .+..+|.+.... .+++.+++.+
T Consensus 123 ~~------tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (443)
T PRK08360 123 AY------TKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKF 196 (443)
T ss_pred Hh------cCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHHHH
Confidence 76 24556765 56899987554432221 234444321100 2355677777
Q ss_pred Hh--cCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCC--------ccCCcEEEeC
Q 001989 725 EA--NRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG--------YIGADVCHLN 790 (985)
Q Consensus 725 ~~--~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg--------~~g~Di~~~s 790 (985)
++ +.+++++|+++-- +..|++.+ -+++|.++|+++|+++++|+++. ++ .+.+ ....|++++
T Consensus 197 ~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~---gr~G~~~a~~~~~~~pDiitl- 271 (443)
T PRK08360 197 EGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQS-GL---GRTGKWFAIEHFGVEPDIITL- 271 (443)
T ss_pred HhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CC---CcCccchhhhhcCCCCCEEEe-
Confidence 53 2367899988732 46787652 28999999999999999999874 22 2222 123688765
Q ss_pred CcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHH
Q 001989 791 LHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTE 870 (985)
Q Consensus 791 ~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~ 870 (985)
.|.++ +|..+|++++++++.+.+..... . +++.+++..++++.+.|..+..+++
T Consensus 272 -sK~l~-----~G~pigav~~~~~i~~~~~~~~~--------------~----~T~~~~p~~~aaa~a~l~~l~~~~l-- 325 (443)
T PRK08360 272 -GKPLG-----GGLPISATIGRAEIMDSLPPLAH--------------A----FTLSGNPVASAAALAVIEEIEEKNL-- 325 (443)
T ss_pred -ccccc-----CCceeEEEEEcHHHHhhhcCCCC--------------C----CCCCcCHHHHHHHHHHHHHHHHcCH--
Confidence 47774 34557888888777665532100 0 1123355566677788887766544
Q ss_pred HHHHHHHHHHHHHHHhhcc---CCeeecCCCCceeeEEEEEecCcc--ccCC-CCHHHHHHHHHHCCCccCCCCCCCCCE
Q 001989 871 ASKIAILNANYMAKRLEKH---YPILFRGVNGTVAHEFIVDLRGLK--NTAG-IEPEDVAKRLMDYGFHGPTMSWPVPGT 944 (985)
Q Consensus 871 ~~~~~~~~a~~l~~~L~~g---~~l~~~~~~~~~~~~~iv~~~~~~--~~~g-~~~~~v~~~L~~~Gi~~~~~~~p~~~~ 944 (985)
.++..++.++++++|++. ++++........+ +-+.+..-. +..+ .....+.++|.++|+++.... .+.
T Consensus 326 -~~~~~~~g~~l~~~L~~l~~~~~~v~~vrg~Gl~--~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~---~~~ 399 (443)
T PRK08360 326 -LKRAEKLGNYTKKRLEEMKKKHELIGDVRGIGLM--IGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFFS---GNV 399 (443)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhCCCeeeeeccceE--EEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeecC---CCE
Confidence 446667778888888652 3322111101122 222221000 0000 123568888999999875432 378
Q ss_pred EEEeccCCCCHHHHHHHHccCChhHHHHhhccCC
Q 001989 945 LMIEPTESESKSWTGIVMLSSPSEKKLHRLKMGR 978 (985)
Q Consensus 945 lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~~ 978 (985)
+|++|+..+|++|||+ +++++++++..++.+.
T Consensus 400 lr~~P~l~~t~~~id~--~~~~l~~~l~~~~~~~ 431 (443)
T PRK08360 400 LRIQPPLTIEKEVLDE--GLDILEEAIEDVEEGK 431 (443)
T ss_pred EEEeCCCCCCHHHHHH--HHHHHHHHHHHHHhcc
Confidence 9999999999999999 8899999998887653
No 233
>PRK09105 putative aminotransferase; Provisional
Probab=99.71 E-value=1.4e-15 Score=174.81 Aligned_cols=280 Identities=14% Similarity=0.123 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHhCCCccceecCcHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGA-AGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa-~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
..++++.+++.+|.+..++..+.|+ ++. .++++.+. +++++|+++++.|+.+...++..|++++.+|.+++
T Consensus 80 ~~~Lr~aia~~~~v~~e~I~it~Gs~~ai---~~~~~~l~-----~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~~~ 151 (370)
T PRK09105 80 EDDLRTLFAAQEGLPADHVMAYAGSSEPL---NYAVLAFT-----SPTAGLVTADPTYEAGWRAADAQGAPVAKVPLRAD 151 (370)
T ss_pred HHHHHHHHHHHhCcChhhEEEcCChHHHH---HHHHHHHc-----CCCCEEEEeCCChHHHHHHHHHcCCeEEEecCCCC
Confidence 3467888999999887666555554 444 33333332 36789999999888787788899999999999877
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHH--cCCEEEEEccccccccCCCCCC---ccCCcE
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHD--NGGQVYMDGANMNAQVGLTSPG---YIGADV 786 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~--~galliVD~a~~~~~~~l~~pg---~~g~Di 786 (985)
+.+|++++++. . +++++|++++|| ++|.+. +.++|.++++. +|+++++|+++.. +....... ....++
T Consensus 152 ~~~d~~~l~~~-~---~~~~~v~l~nP~NPTG~~~-~~~~l~~l~~~~~~~~~lIvDEaY~~-f~~~~s~~~~~~~~~~v 225 (370)
T PRK09105 152 GAHDVKAMLAA-D---PNAGLIYICNPNNPTGTVT-PRADIEWLLANKPAGSVLLVDEAYIH-FSDAPSVVDLVAQRKDL 225 (370)
T ss_pred CCCCHHHHHhc-C---CCCCEEEEeCCCCCCCcCc-CHHHHHHHHHhCCCCcEEEEECchHH-hccCcchHHHHhhCCCE
Confidence 88999999876 3 578899999994 799997 77888877754 4899999998731 21111111 123454
Q ss_pred -EEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 787 -CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 787 -~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
++.|++|+|++| |.++|++++++++.+.+... + ..+.+ . ....++.+++. ..
T Consensus 226 i~~~SfSK~~g~~----GlRiG~~v~~~~~i~~l~~~--~-------------~~~~~-----~-~~~~aa~~~L~--~~ 278 (370)
T PRK09105 226 IVLRTFSKLYGMA----GMRLGLAAARPDLLAKLARF--G-------------HNPLP-----V-PAAAAGLASLR--DP 278 (370)
T ss_pred EEEecccHhhcCC----ccceeeeecCHHHHHHHHhc--C-------------CCCcC-----H-HHHHHHHHHHh--CH
Confidence 456778888554 67899999887665443211 0 01111 1 11122223332 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCE
Q 001989 866 KGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGT 944 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~ 944 (985)
+-+++..++..++.+++.+.|++ ++.+. .+.+.+ +.++++ .+..++.+.|.++||.++......+++
T Consensus 279 ~~~~~~~~~~~~~r~~l~~~L~~~g~~~~--~~~~~f---~~~~~~-------~~~~~l~~~L~~~gI~v~~~~~~~~~~ 346 (370)
T PRK09105 279 KLVPQRRAENAAVREDTIAWLKKKGYKCT--PSQANC---FMVDVK-------RPAKAVADAMAKQGVFIGRSWPIWPNW 346 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCcC--CCCCcE---EEEeCC-------CCHHHHHHHHHHCCcEEecCCCCCCCe
Confidence 33444455667778888888886 44432 222322 234432 357889999999999884321123589
Q ss_pred EEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 945 LMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 945 lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+||++. +.+++++ +++.|++++
T Consensus 347 ~Ris~~---~~~~~~~--l~~al~~~~ 368 (370)
T PRK09105 347 VRVTVG---SEEEMAA--FRSAFAKVM 368 (370)
T ss_pred EEEEcC---CHHHHHH--HHHHHHHHh
Confidence 999984 7899999 777777654
No 234
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=99.71 E-value=1.8e-15 Score=174.30 Aligned_cols=309 Identities=16% Similarity=0.084 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
..++++.+++++|.+.+ +.+++|++|+..++.++ +..+||+||+++..|..+...+...|++++.++++++
T Consensus 35 ~~~le~~la~~~g~~~~-v~~~sgt~al~lal~al-------~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~~~~~ 106 (379)
T PRK11658 35 NQALEQAFCQLTGNQHA-IAVSSATAGMHITLMAL-------GIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDVDRDT 106 (379)
T ss_pred HHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHHc-------CCCCCCEEEECCCcHHHHHHHHHHcCCEEEEEecCCCc
Confidence 35788999999998754 55677877765444432 1247899999998777776677889999999999765
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-CCCccCCcEEEeCC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-SPGYIGADVCHLNL 791 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-~pg~~g~Di~~~s~ 791 (985)
+.+|+++++++++ ++|++|+.+++ +|... |+++|.++|+++|+++++|++|..+..... ..+.+|.|+.+++.
T Consensus 107 ~~~d~~~l~~~i~---~~tkav~~~~~--~G~~~-d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~ 180 (379)
T PRK11658 107 LMVTPEAIEAAIT---PRTKAIIPVHY--AGAPA-DLDAIRAIGERYGIPVIEDAAHAVGTYYKGRHIGARGTAIFSFHA 180 (379)
T ss_pred CCcCHHHHHHhcc---cCCeEEEEeCC--CCCcC-CHHHHHHHHHHcCCeEEEECCCccCCeECCeecCCCCCEEEeCCC
Confidence 5799999999997 78999887664 68887 899999999999999999999964432111 34667777777777
Q ss_pred cccccccCCCCCCceEEEEEc-ccccCcCCC-CccccCCCCC---CCCCCCCCC--CCCCcchhhhHHHHHHHHHHHHhc
Q 001989 792 HKTFCIPHGGGGPGMGPIGVK-KHLAPFLPS-HPVVSTGGIP---APEKSQPLG--TIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 792 hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~-~~~g~~~~~~---~~~~~~~~~--~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
+|.+. + +.+|+++.+ +++...+.. +..|...+.. ......... ....++ ....+.+| +....
T Consensus 181 ~K~l~-----~-g~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~--~~~~l~AA---l~~~q 249 (379)
T PRK11658 181 IKNIT-----C-AEGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKY--NLADINAA---IALVQ 249 (379)
T ss_pred CCcCc-----c-cCceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeecccccc--CcCHHHHH---HHHHH
Confidence 78763 2 345666664 444332211 0111111000 000000000 000000 00111222 22233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-CCeeecCCC--CceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC---
Q 001989 865 SKGLTEASKIAILNANYMAKRLEKH-YPILFRGVN--GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS--- 938 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~g-~~l~~~~~~--~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~--- 938 (985)
.+++.+..++..++++++.+.|++. +..+..... ....+.+.+.++. ...+.+.+++.+.|.++||.+....
T Consensus 250 l~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~r~~~~~~L~~~gI~~~~~~~~~ 327 (379)
T PRK11658 250 LAKLEALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVDE--ERCGISRDALMEALKERGIGTGLHFRAA 327 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEECC--ccccCCHHHHHHHHHHCCCCCcccCcCc
Confidence 4567777778888888898999762 211111111 1122344555431 0014567899999999998754211
Q ss_pred --------------CC-----CCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 939 --------------WP-----VPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 939 --------------~p-----~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+| ....+.+-++...|.||+++ .++++++++
T Consensus 328 ~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~--i~~~i~~~~ 377 (379)
T PRK11658 328 HTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDR--VITALQQIA 377 (379)
T ss_pred ccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHH--HHHHHHHHH
Confidence 12 12456666667799999999 778887765
No 235
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=99.71 E-value=1.1e-15 Score=174.68 Aligned_cols=282 Identities=15% Similarity=0.156 Sum_probs=185.4
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++.++++++.+...+..++|++ +. .++++.+. .++|+|+++++.|+.+...++..|++++.+|.++++
T Consensus 63 ~~lr~aia~~~~~~~~~I~it~G~~~al---~~~~~~l~-----~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~ 134 (353)
T PRK05387 63 DALRQAIAAYYGLDPEQVFVGNGSDEVL---AHAFLAFF-----NHDRPLLFPDITYSFYPVYAGLYGIPYEEIPLDDDF 134 (353)
T ss_pred HHHHHHHHHHhCCCHHHEEEcCCHHHHH---HHHHHHhc-----CCCCEEEEeCCCHHHHHHHHHHcCCEEEEeecCCCC
Confidence 3788899999998876666655554 43 33334332 478999999987766677788899999999998788
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHc-CCEEEEEccccccccCCCC---CCccCCcEEE
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDN-GGQVYMDGANMNAQVGLTS---PGYIGADVCH 788 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~-galliVD~a~~~~~~~l~~---pg~~g~Di~~ 788 (985)
.+|++++++ .+++|++++|+ ++|.+. +.+++.++++.+ |+++++|+++.. +++-.. .....-.+++
T Consensus 135 ~~d~~~l~~-------~~~~v~~~~P~NPtG~~~-~~~~~~~l~~~~~~~~livDe~y~~-~~~~~~~~~~~~~~~~i~~ 205 (353)
T PRK05387 135 SIDVEDYLR-------PNGGIIFPNPNAPTGIAL-PLAEIERILAANPDSVVVIDEAYVD-FGGESAIPLIDRYPNLLVV 205 (353)
T ss_pred CCCHHHHHh-------cCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCcEEEEeCcccc-cCCcchHHHHhhCCCEEEE
Confidence 899998863 23568888994 799998 899999999876 999999998731 221100 0122345888
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
.|++|+|++| |.++|++++++++.+.+.... ......+.+..++ .++..++. ..+.+
T Consensus 206 ~S~SK~~~~~----GlR~G~~~~~~~~~~~l~~~~-------------~~~~~~~~~~~~q----~~~~~~l~--~~~~~ 262 (353)
T PRK05387 206 QTFSKSRSLA----GLRVGFAIGHPELIEALNRVK-------------NSFNSYPLDRLAQ----AGAIAAIE--DEAYF 262 (353)
T ss_pred EehhHhhcch----hhhceeeecCHHHHHHHHHhh-------------ccCCCCCcCHHHH----HHHHHHhc--CHHHH
Confidence 8999988654 678999998876654432110 0000111111111 11112222 23345
Q ss_pred HHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC-CCCEEE
Q 001989 869 TEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP-VPGTLM 946 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p-~~~~lr 946 (985)
++..++..++++++.+.|++ ++.+ . ++ +..+ +.+.++ +.+..++++.|.++||.+.....+ ..+++|
T Consensus 263 ~~~~~~~~~~~~~l~~~L~~~g~~~-~-~~-~~~~--~~~~~~------~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iR 331 (353)
T PRK05387 263 EETRAKVIATRERLVEELEALGFEV-L-PS-KANF--VFARHP------SHDAAELAAKLRERGIIVRHFNKPRIDQFLR 331 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeE-C-CC-cCcE--EEEECC------CCCHHHHHHHHHHCCEEEEECCCCCCCCeEE
Confidence 56666677888899999987 4433 2 22 2222 234433 356789999999999987543322 357899
Q ss_pred EeccCCCCHHHHHHHHccCChhHHHH
Q 001989 947 IEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 947 is~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
+++. +.+++++ +++.|++++.
T Consensus 332 is~~---~~~~~~~--~~~~L~~~~~ 352 (353)
T PRK05387 332 ITIG---TDEEMEA--LVDALKEILA 352 (353)
T ss_pred EEeC---CHHHHHH--HHHHHHHHhh
Confidence 9985 7799999 7788877654
No 236
>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]
Probab=99.71 E-value=3e-16 Score=168.38 Aligned_cols=316 Identities=14% Similarity=0.176 Sum_probs=210.6
Q ss_pred cceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHH
Q 001989 167 YKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAM 246 (985)
Q Consensus 167 ~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~ 246 (985)
.++|||++-+|...-+.-+ . +.+.+- +...-+-..|+-+-..+++..+|+|-+-|. +.++++.--+..+.+.
T Consensus 178 SNDYLgms~Hp~V~~A~~~-t-l~~hG~----GAGGTRNIsG~s~~hv~LE~eLA~LHqK~a--ALlFsSCfVANDstLf 249 (570)
T KOG1360|consen 178 SNDYLGMSRHPEVLDAMHD-T-LDRHGA----GAGGTRNISGHSKHHVRLEAELADLHQKEA--ALLFSSCFVANDSTLF 249 (570)
T ss_pred cCccccccCChHHHHHHHH-H-HHHcCC----CcCCccccCCCCchhhhHHHHHHHHhcCcc--eeeeeeeeeccchHHH
Confidence 4679999987655444442 2 333222 112224446777778889999999999887 4444444334444442
Q ss_pred HhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchhhhc-c---CCC-EeEEEEEcC-CCCeeeccHHHHHH
Q 001989 247 CNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDY-K---SGD-VCGVLVQYP-GTEGEVLDYGDFIK 320 (985)
Q Consensus 247 a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~~-l---~~~-t~~V~v~~p-n~~G~v~di~~I~~ 320 (985)
.+. .+-++-+|+.++.+|.|.+..++. +.--...+++.|+++|++ + ++. .+.|.+... ++.|.|.||+||++
T Consensus 250 tLa-k~lpgcei~SD~gNHASMI~GIrn-s~v~K~IFrHND~~hL~~lL~~~~~svPKivAFEtVhSM~GavcpleelcD 327 (570)
T KOG1360|consen 250 TLA-KKLPGCEIFSDEGNHASMIQGIRN-SRVPKHIFRHNDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELCD 327 (570)
T ss_pred HHH-HHCCCcEEeccccchHHHHHHhhh-cCCcceeeccCCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHHH
Confidence 221 112889999999999999999986 333456677789888876 3 333 466667664 89999999999999
Q ss_pred HHHhCCcEEEEEecCccccCCCCCCc-----c----cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeee
Q 001989 321 NAHANGVKVVMATDLLALTILKPPGE-----L----GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGV 390 (985)
Q Consensus 321 ~a~~~galliV~a~~~~lg~l~~~~~-----~----GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~ 390 (985)
++|++|++..+ ++.++.|+..+-|. - -+||+.|+. |+||. .| ||++.+..+++.+...
T Consensus 328 vah~yGAiTFl-DEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGc---VG----GYIAat~~LvDmiRSy---- 395 (570)
T KOG1360|consen 328 VAHKYGAITFL-DEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGC---VG----GYIAATRKLVDMIRSY---- 395 (570)
T ss_pred HHHHhCceeee-ehhhhhccccCCCCCccccCCcchhhhhcccchhhhccc---cc----ceehhhhhHHHHHHHh----
Confidence 99999999999 45677776654321 2 379999997 99974 44 5999888877654111
Q ss_pred eecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc
Q 001989 391 SIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ 470 (985)
Q Consensus 391 t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~ 470 (985)
..+|.++-+ - .+..+.+...++- -+-..|| +.+++...++..|+++.|.++| +.++
T Consensus 396 ------AaGFIFTTS-------------L--PP~vl~GAleaVr-~lk~~eg-~~lR~~hqrnv~~~kq~l~~~G-iPVi 451 (570)
T KOG1360|consen 396 ------AAGFIFTTS-------------L--PPMVLAGALEAVR-ILKSEEG-RVLRRQHQRNVKYVKQLLMELG-IPVI 451 (570)
T ss_pred ------cCceEEecC-------------C--ChHHHHhHHHHHH-HHhhhhh-HHHHHHHHHHHHHHHHHHHHcC-Cccc
Confidence 112433210 0 0123444444441 1223445 3456667888999999999998 8877
Q ss_pred CCCCcceEEEecCC---HHHHHHHHHH-cCceeeeec-------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 471 GLPFFDTVKVKCAD---AHAIASAAYK-IEMNLRVVD-------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 471 ~~~~~~~~~~~~~~---~~~v~~~L~~-~GI~~~~~~-------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..| .+.+.+.+.+ +.++.+.|.. +||++..+. .+.+|+.+|+.+|.+-++.|+++|..
T Consensus 452 ~~p-SHIiPv~vgda~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~ 520 (570)
T KOG1360|consen 452 PNP-SHIIPVRVGDAALAKQASDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLD 520 (570)
T ss_pred CCC-cceeeeeccCHHHHHHHHHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHH
Confidence 433 2344444443 7778888875 599885431 36799999999999999999998863
No 237
>PRK08361 aspartate aminotransferase; Provisional
Probab=99.70 E-value=1.9e-15 Score=175.12 Aligned_cols=301 Identities=16% Similarity=0.148 Sum_probs=187.3
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+.+.+++.+.+|. +...+.. ++++++...+ ++.+. .++++|+++++.|..+...+...|+++
T Consensus 70 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~---~~~l~-----~~g~~Vlv~~p~y~~~~~~~~~~g~~~ 141 (391)
T PRK08361 70 AGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLA---FESLL-----EEGDEVIIPDPAFVCYVEDAKIAEAKP 141 (391)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHH---HHHhc-----CCCCEEEEcCCCCcccHHHHHHcCCEE
Confidence 56666666666666555564 3334444 4445555333 33321 367899999998888887788899999
Q ss_pred EEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccc-cC--
Q 001989 705 VSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQ-VG-- 775 (985)
Q Consensus 705 v~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~-~~-- 775 (985)
+.+|++++ +.+|+++++++++ +++++|++++| |++|.+. | +++|+++|+++++++++|+++..-. .+
T Consensus 142 ~~v~~~~~~~~~~d~~~l~~~i~---~~~~~v~i~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~ 217 (391)
T PRK08361 142 IRIPLREENEFQPDPDELLELIT---KRTRMIVINYPNNPTGATL-DKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAK 217 (391)
T ss_pred EEEecCCccCCCCCHHHHHHhcc---cccEEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCeEEEEEcccccceeCCCC
Confidence 99998764 5799999999997 78899999998 4799987 6 8999999999999999999873211 00
Q ss_pred CCCCC--ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 776 LTSPG--YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 776 l~~pg--~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
..... ....++++.|++|+|+.| |.++|++++++++...+.... .....++++ ...
T Consensus 218 ~~~~~~~~~~~~i~~~s~SK~~~~~----GlRiG~~~~~~~~~~~~~~~~------------~~~~~~~~~------~~q 275 (391)
T PRK08361 218 HYPMIKYAPDNTILANSFSKTFAMT----GWRLGFVIAPEQVIKDMIKLH------------AYIIGNVAS------FVQ 275 (391)
T ss_pred CCCHhhcCCCCEEEEecCchhcCCc----HhhhhhhccCHHHHHHHHHHH------------hhhccCCCh------HHH
Confidence 00001 123467889999998543 456899998876654331100 000112211 111
Q ss_pred HHHHHHHHHhcH--HHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH-C
Q 001989 854 PISYTYIAMMGS--KGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD-Y 930 (985)
Q Consensus 854 ~~a~a~l~~lg~--eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~-~ 930 (985)
.++...+.. +. +.+++..++..++.+++.+.|++...+.+..+.+..+ +.+.++. .+.+..+++++|.+ +
T Consensus 276 ~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~~~--~~~~l~~----~~~~~~~l~~~l~~~~ 348 (391)
T PRK08361 276 IAGIEALRS-KESWKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAFY--VFANIDE----TGMSSEDFAEWLLEKA 348 (391)
T ss_pred HHHHHHhcC-CcccHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCEEEE--EEEECCC----CCCCHHHHHHHHHHhC
Confidence 111122221 11 2355556666777888888887621332222322222 3345541 14567889988864 7
Q ss_pred CCccCCC-CCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 931 GFHGPTM-SWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 931 Gi~~~~~-~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
||.+... .|. .++++||++.. +.++++. .++.|++.+++
T Consensus 349 gv~v~pg~~f~~~~~~~iRi~~~~--~~~~l~~--al~~l~~~l~~ 390 (391)
T PRK08361 349 RVVVIPGTAFGKAGEGYIRISYAT--SKEKLIE--AMERMEKALEE 390 (391)
T ss_pred CEEEcCchhhCCCCCCEEEEEecC--CHHHHHH--HHHHHHHHHhc
Confidence 9987532 222 24789999874 6778888 66777776654
No 238
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.70 E-value=3.3e-15 Score=175.58 Aligned_cols=342 Identities=15% Similarity=0.171 Sum_probs=203.8
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC------ccceecCcHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD------SFSLQPNAGAAGEYAGL 665 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~------~~~~~~~sGa~a~~a~l 665 (985)
..+|++++.+..+...+........+. .+.. +...++.+.+++++.-. ...++.+||++|+++++
T Consensus 76 ~~lGh~~p~i~~Ai~~q~~~l~~~~~~-~~~~--------~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~Al 146 (472)
T PRK08742 76 NLFGHAEPRIGAAIAAQAGELEQVMLA-GFTH--------EPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVAL 146 (472)
T ss_pred ccCCCCCHHHHHHHHHHHHhCCCcccc-ccCC--------HHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHH
Confidence 457888777766554443111111111 0110 12346778888877421 13577899999999999
Q ss_pred HHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCC-----CC-------CCHHHH
Q 001989 666 MVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAK-----GN-------INIEEL 720 (985)
Q Consensus 666 ~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~-----g~-------iD~e~L 720 (985)
+.+|.|...+|..++.+||. ..++||....+....|. .+..+|.... +. .+++.+
T Consensus 147 KlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l 226 (472)
T PRK08742 147 KMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADAL 226 (472)
T ss_pred HHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHH
Confidence 99998865555334567765 67899987555432221 2333443211 11 136778
Q ss_pred HHHHHhcCCCEEEEEEEc-C-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEE
Q 001989 721 RKAAEANRDNLSTLMVTY-P-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVC 787 (985)
Q Consensus 721 ~~~i~~~~~~t~~Vvv~~-p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~ 787 (985)
++.++++.+++++|+++- . ...|++.+ -++++.++|+++|+++|+|+++ .|+.++|.+ -+|++
T Consensus 227 ~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~----TGfGRtG~~~a~e~~gv~PDiv 302 (472)
T PRK08742 227 QALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIA----TGFGRTGTLFACEQAGVMPDLL 302 (472)
T ss_pred HHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechh----hCCCCCccchHHHhcCCCCCEE
Confidence 888865556889998875 2 34566542 3899999999999999999876 445555533 27999
Q ss_pred EeCCcccccccCCCC-CCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 788 HLNLHKTFCIPHGGG-GPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 788 ~~s~hK~l~~p~g~G-GPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
+++ |.++ +| -| +|.+++++++.+.+..... . ......+++.|+++.++++.+.|..+.++
T Consensus 303 ~~g--Kgl~----gG~~P-laav~~~~ei~~~~~~~~~-----------~-~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~ 363 (472)
T PRK08742 303 CLS--KGLT----GGFLP-LSAVLATQQLYDAFLDDSR-----------E-RAFLHSHSYTGNPLACAAALATLDIFADD 363 (472)
T ss_pred EEc--cccc----CCCCC-cceeeccHHHHHHhhccCc-----------c-CccCcCCCCCccHHHHHHHHHHHHHHHHC
Confidence 874 7763 33 25 5556667766543321100 0 00012234567888888888999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc--cCCee--ecCCCCceeeEEEEEecCccccC-CCC---HHHHHHHHHHCCCccCCCC
Q 001989 867 GLTEASKIAILNANYMAKRLEK--HYPIL--FRGVNGTVAHEFIVDLRGLKNTA-GIE---PEDVAKRLMDYGFHGPTMS 938 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~--g~~l~--~~~~~~~~~~~~iv~~~~~~~~~-g~~---~~~v~~~L~~~Gi~~~~~~ 938 (985)
++.+ +..+..++|.+.++. .+.++ +.+. + .+..+.+..+.-.+.. ..+ ...+.+++.++|+++...
T Consensus 364 ~l~~---~~~~~g~~l~~~~~~~~~~~~i~dvRG~-G-l~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~- 437 (472)
T PRK08742 364 DVIA---RNQPTAARMTQLAAQIGEHPHVADVRQA-G-MVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPL- 437 (472)
T ss_pred CHHH---HHHHHHHHHHHHHHHHhcCCCeeeEecc-c-eEEEEEeccCccccccCCchhHHHHHHHHHHHHCCeEEEec-
Confidence 6654 444555666654432 12221 1121 1 2222222111000000 001 245778888999987543
Q ss_pred CCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 939 WPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 939 ~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.+.|||.|+...|++|||. ++++|+++++.+.+
T Consensus 438 ---g~vi~~~PpL~it~~ei~~--~~~~l~~~l~~~~~ 470 (472)
T PRK08742 438 ---GDVLYWMPPYCVDEAQLAL--LADTTRHAIDEAVA 470 (472)
T ss_pred ---CCEEEEECCCCCCHHHHHH--HHHHHHHHHHHHhc
Confidence 3799999999999999999 88999999887643
No 239
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=99.70 E-value=1.6e-15 Score=174.98 Aligned_cols=283 Identities=14% Similarity=0.110 Sum_probs=184.3
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++++++++|.+..++..++|++ +. .++++.+. .++++|+++++.++.+...++..|++++.+|.++++
T Consensus 89 ~~lr~~ia~~~~~~~~~I~~t~Ga~~~i---~~~~~~~~-----~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~ 160 (380)
T PLN03026 89 RRLRAALAEDSGLESENILVGCGADELI---DLLMRCVL-----DPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRTPDF 160 (380)
T ss_pred HHHHHHHHHHhCcChhhEEEcCCHHHHH---HHHHHHhc-----CCCCEEEEcCCChHHHHHHHHHcCCEEEEeecCCCC
Confidence 4688899999998876666666654 33 23333321 367899999887766666678899999999987778
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCC----CCccCCcEEE
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS----PGYIGADVCH 788 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~----pg~~g~Di~~ 788 (985)
.+|+++|++++.. +++++|++++|| ++|.+. +.+++.++++.. +++++|+++.. +..... .....-.+++
T Consensus 161 ~~d~~~l~~~~~~--~~~~~v~l~~P~NPTG~~~-~~~~l~~l~~~~-~~vi~DeaY~~-~~~~~~~~~~~~~~~~viv~ 235 (380)
T PLN03026 161 SLDVPRIVEAVET--HKPKLLFLTSPNNPDGSII-SDDDLLKILELP-ILVVLDEAYIE-FSTQESRMKWVKKYDNLIVL 235 (380)
T ss_pred CcCHHHHHHHHhc--cCCcEEEEeCCCCCCCCCC-CHHHHHHHHhcC-CEEEEECcchh-hcCCcchHHHHHhCCCEEEE
Confidence 8999999999831 688999999995 799998 899999999865 89999999731 111000 1122234778
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
.|+.|.|++| |.++|++++++++...+... + ...+++. .++ .++.++|.. .+-+
T Consensus 236 ~SfSK~~gla----GlRiGy~~~~~~~i~~l~~~------------~--~~~~~~~--~~q----~aa~~aL~~--~~~~ 289 (380)
T PLN03026 236 RTFSKRAGLA----GLRVGYGAFPLSIIEYLWRA------------K--QPYNVSV--AAE----VAACAALSN--PKYL 289 (380)
T ss_pred ecchHhhcCc----cccceeeecCHHHHHHHHHh------------c--CCCCCCH--HHH----HHHHHHhhC--HHHH
Confidence 8888988654 78999999887665443210 0 0011211 111 112223321 2234
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-CCCCCEEEE
Q 001989 869 TEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-WPVPGTLMI 947 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~p~~~~lri 947 (985)
++..+...++++++.+.|++.-.+...++ +..+ +.+.++ .+.+..++.+.|.++||.+.... .+.++++||
T Consensus 290 ~~~~~~~~~~r~~l~~~L~~~~~~~~~p~-~~~f--~~~~~~-----~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~lRi 361 (380)
T PLN03026 290 EDVKNALVEERERLFGLLKEVPFLEPYPS-DANF--ILCRVT-----SGRDAKKLKEDLAKMGVMVRHYNSKELKGYIRV 361 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCeECCC-CCeE--EEEECC-----CCCCHHHHHHHHHHCCeEEEECCCCCCCCEEEE
Confidence 45555667778888888876211111122 2222 334543 13567899999999999875432 234579999
Q ss_pred eccCCCCHHHHHHHHccCChhH
Q 001989 948 EPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 948 s~t~~~t~eeId~~~~~~~l~~ 969 (985)
++. +.+|+++ +.+.|++
T Consensus 362 s~~---~~~~~~~--l~~al~~ 378 (380)
T PLN03026 362 SVG---KPEHTDA--LMEALKQ 378 (380)
T ss_pred ecC---CHHHHHH--HHHHHHH
Confidence 984 7889999 5555543
No 240
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=99.70 E-value=4.3e-15 Score=172.15 Aligned_cols=306 Identities=14% Similarity=0.143 Sum_probs=186.4
Q ss_pred hhHHHHHHHHHHHHHHHhCCC---ccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD---SFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~---~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
.|..++.+.+.+++...+|.. ...+ ..+++++|...++.++ . .++++|+++++.|+.+...++..|++
T Consensus 67 ~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~---~-----~~gd~vl~~~p~y~~~~~~~~~~g~~ 138 (391)
T PRK07309 67 AGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTAI---L-----EPGDKVLLPAPAYPGYEPIVNLVGAE 138 (391)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHh---c-----CCCCEEEEeCCCCcchHHHHHHcCCE
Confidence 465555555555555555542 2234 4455555554333322 1 36789999988887777778889999
Q ss_pred EEEEcCCCC-CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccccc-C-C-
Q 001989 704 IVSVGTDAK-GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQV-G-L- 776 (985)
Q Consensus 704 vv~v~~d~~-g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~-~-l- 776 (985)
++.+|.+++ +.+|+++|++++++.++++++|++++| |++|.+- .++++|+++|+++|+++++|+++..-.- + .
T Consensus 139 ~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~ 218 (391)
T PRK07309 139 IVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPH 218 (391)
T ss_pred EEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCC
Confidence 999998654 579999999999744457899999998 5799874 2589999999999999999998742110 1 0
Q ss_pred CCCCccCC--cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHH
Q 001989 777 TSPGYIGA--DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 777 ~~pg~~g~--Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
.....+.. -+++.|++|.|+.| |.++|++++++++.+.+.... .....+.+ ...+ .
T Consensus 219 ~~~~~~~~~~~i~~~S~SK~~g~~----GlRvG~~v~~~~~~~~~~~~~------------~~~~~~~~--~~~q----~ 276 (391)
T PRK07309 219 VSIAEYLPDQTILINGLSKSHAMT----GWRIGLIFAPAEFTAQLIKSH------------QYLVTAAT--TMAQ----F 276 (391)
T ss_pred CCHHHhccCCEEEEecChhhccCc----cceeEEEEeCHHHHHHHHHHH------------hhcccCCC--hHHH----H
Confidence 01111112 37788999998654 678999999877654432100 00001111 1111 1
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH-HHCCC
Q 001989 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL-MDYGF 932 (985)
Q Consensus 855 ~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L-~~~Gi 932 (985)
++..++.. +..-.....++..++++++.+.|++ ++.+. .+.+.++ +.+.++. ..+.+..+++++| .++||
T Consensus 277 ~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~p~gg~~--~~~~l~~---~~~~~~~~~~~~l~~~~gv 348 (391)
T PRK07309 277 AAVEALTN-GKDDALPMKKEYIKRRDYIIEKMTDLGFKII--KPDGAFY--IFAKIPA---GYNQDSFKFLQDFARKKAV 348 (391)
T ss_pred HHHHHHhC-ChhHHHHHHHHHHHHHHHHHHHHHHCCCeec--CCCeeEE--EEEECCC---CCCCCHHHHHHHHHHhCCE
Confidence 12222321 2221223334456677888888876 44332 2222222 2344431 0122467788775 46799
Q ss_pred ccCCCC-C-C-CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 933 HGPTMS-W-P-VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 933 ~~~~~~-~-p-~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+.... | + .++++||++.. +.++++. .++.|++++++++
T Consensus 349 ~v~pg~~f~~~~~~~iRi~~~~--~~~~l~~--~i~~l~~~~~~~~ 390 (391)
T PRK07309 349 AFIPGAAFGPYGEGYVRLSYAA--SMETIKE--AMKRLKEYMEEHA 390 (391)
T ss_pred EEeCchhhCCCCCCEEEEEecC--CHHHHHH--HHHHHHHHHHhhc
Confidence 875322 2 2 25799999874 5789999 7788988887765
No 241
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.70 E-value=2.3e-15 Score=175.91 Aligned_cols=319 Identities=14% Similarity=0.158 Sum_probs=196.8
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~ 671 (985)
..+|+|++.+..+...+......+...++ ...++.+.|++++......++.+||++|++++++.+|.|
T Consensus 65 ~~lGh~~p~v~~ai~~q~~~~~~~~~~~~------------~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~ 132 (428)
T PRK12389 65 IITGHAHPHITKAITEAAENGVLYGTPTE------------LEIEFAKMLKEAIPSLEKVRFVNSGTEAVMTTIRVARAY 132 (428)
T ss_pred cccCCCCHHHHHHHHHHHHhCCccCCCCH------------HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHHHh
Confidence 45898888777665554422111211111 134677788887642223567899999999999999886
Q ss_pred HHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc-------------------EEEEEcCCCCCCCCHHHHHHHHHhcCCCE
Q 001989 672 HKARGDHHRNVCII-PVSAHGTNPATAAMCGM-------------------KIVSVGTDAKGNINIEELRKAAEANRDNL 731 (985)
Q Consensus 672 ~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~-------------------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t 731 (985)
. ++.+||. ...+||.........|. ++..+|. .|++++++.++++.+++
T Consensus 133 t------gr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~~~~v 201 (428)
T PRK12389 133 T------GRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPF-----NDIEALKEALDKWGDEV 201 (428)
T ss_pred h------CCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCC-----CCHHHHHHHHHhcCCcE
Confidence 2 4556665 67899977655433221 1222332 38999999997665678
Q ss_pred EEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCC------c--cCCcEEEeCCccccccc
Q 001989 732 STLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLTSPG------Y--IGADVCHLNLHKTFCIP 798 (985)
Q Consensus 732 ~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~~pg------~--~g~Di~~~s~hK~l~~p 798 (985)
++|+++-. +..|++. + +++|.++|+++|+++|+|+++. |+ +.+ . ..+|+++++ |.+
T Consensus 202 aavi~EPv~g~~G~~~-p~~~yl~~l~~lc~~~g~llI~DEV~t----G~-Rt~~~~a~~~~gv~PDivt~g--K~l--- 270 (428)
T PRK12389 202 AAVLVEPIVGNFGIVE-PKPGFLEAVNELAHEAGALVIYDEVIT----AF-RFMYGGAQDLLGVEPDLTALG--KII--- 270 (428)
T ss_pred EEEEEeCCCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEEcccc----cc-ccCcchhhHHhCCCCCeeeec--hhh---
Confidence 88888753 4567775 5 9999999999999999999873 22 221 1 237987653 766
Q ss_pred CCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 001989 799 HGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILN 878 (985)
Q Consensus 799 ~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~ 878 (985)
++|-| +|.+++++++.+.+... + .....+++.|+++.++++.+.|..+..+++ .++..++
T Consensus 271 -ggG~P-i~av~~~~~i~~~~~~~--~-------------~~~~~~T~~gnpl~~Aaala~L~~l~~~~l---~~~~~~~ 330 (428)
T PRK12389 271 -GGGLP-IGAYGGRKDIMEQVAPL--G-------------PAYQAGTMAGNPASMAAGIACLEVLQQEGV---YEKLDRL 330 (428)
T ss_pred -cCCCc-eeEEeEHHHHHhhhccC--C-------------CcccccCCccCHHHHHHHHHHHHHHhcccH---HHHHHHH
Confidence 44445 44557787776655310 0 001123456678888888899998876654 4467778
Q ss_pred HHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCccc-----c-CCCCHHHHHHHHHHCCCccCCCCCCCCCEEEE
Q 001989 879 ANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGLKN-----T-AGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMI 947 (985)
Q Consensus 879 a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~~~-----~-~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lri 947 (985)
.++|+++|++. +++. ...- ...+ .+.+....... . .......+.+.|.++|+++.....+ . +
T Consensus 331 g~~l~~~L~~l~~~~~~~~~v~r~-~g~~-gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~---~--~ 403 (428)
T PRK12389 331 GAMLEEGILEAAEKHGITITINRL-KGAL-TVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSKYE---A--W 403 (428)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEec-CcEE-EEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecCCCC---C--e
Confidence 88888888752 2221 1111 1122 12221110000 0 0001356788899999988544322 2 3
Q ss_pred eccCCCCHHHHHHHHccCChhHHHHh
Q 001989 948 EPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 948 s~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.|+..+|++|||+ +++++++++.+
T Consensus 404 ~~~l~~t~e~id~--~~~~l~~~l~~ 427 (428)
T PRK12389 404 FLTTAHTEEDIEE--TLEAVDRAFAQ 427 (428)
T ss_pred eecCCCCHHHHHH--HHHHHHHHHHh
Confidence 4778999999999 77888888764
No 242
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.70 E-value=3e-15 Score=175.97 Aligned_cols=339 Identities=14% Similarity=0.151 Sum_probs=207.3
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air~ 670 (985)
..||++++.+..+...+.......... .+. .+...++.+.+++++..+ ...++.+||++|++++++.+|.
T Consensus 59 ~~lGh~~p~v~~Ai~~ql~~l~~~~~~-~~~--------~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlKlAr~ 129 (466)
T PRK07030 59 NVFGHANPRINQRIKDQVDQLEHVILA-GFS--------HEPVIELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFH 129 (466)
T ss_pred hcCCCCCHHHHHHHHHHHHhcCCcccc-ccC--------CHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHH
Confidence 357888777766544443221111110 011 122446778888887422 2357789999999999999998
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCC-----C-------CCCHHHHHHHHH
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAK-----G-------NINIEELRKAAE 725 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~-----g-------~iD~e~L~~~i~ 725 (985)
|...+|.+++.+||. ...+||....+....|- .+..+|.... + ..+++++++.++
T Consensus 130 ~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~ 209 (466)
T PRK07030 130 YWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLA 209 (466)
T ss_pred HHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHH
Confidence 865555434566765 67899977555432221 1333443211 1 113677888887
Q ss_pred hcCCCEEEEEEEc-C-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCc
Q 001989 726 ANRDNLSTLMVTY-P-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLH 792 (985)
Q Consensus 726 ~~~~~t~~Vvv~~-p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~h 792 (985)
++.+++++|+++- . ...|++.+ -+++|.++|+++|+++|+|+++ .|+.+.|.+ -+|+++++
T Consensus 210 ~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~----TGfGRtG~~~a~~~~gv~PDiv~~g-- 283 (466)
T PRK07030 210 EHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIA----VGFGRTGTMFACEQAGIRPDFLCLS-- 283 (466)
T ss_pred hCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehh----hCcCccccchHHHhcCCCCCEEeee--
Confidence 6667899998875 2 34566542 3899999999999999999876 445555542 27999874
Q ss_pred ccccccCCCC-CCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHH
Q 001989 793 KTFCIPHGGG-GPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEA 871 (985)
Q Consensus 793 K~l~~p~g~G-GPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~ 871 (985)
|.++ +| -| +|.+++++++.+.+.... . .... ....+++.|+++.++++.+.|+.+.++++.
T Consensus 284 Kgl~----gG~~P-i~av~~~~ei~~~~~~~~-~---------~~~~-~~h~~T~~gnpla~aaa~a~L~~i~~~~l~-- 345 (466)
T PRK07030 284 KALT----GGYLP-LAAVLTTDTVYQAFYDDY-P---------TLRA-FLHSHSYTGNPLACAAALATLDIFEQDNVI-- 345 (466)
T ss_pred hhcc----CCccc-ceEEEecHHHHHHHhccc-c---------cccc-cccCCCCCCCHHHHHHHHHHHHHHHhcCHH--
Confidence 7763 33 25 566666777654431100 0 0000 011234567888888888999988776554
Q ss_pred HHHHHHHHHHHHHHhhcc--CCee--ecCCCCceeeEEEEEecC--c-cccCCC---CHHHHHHHHHHCCCccCCCCCCC
Q 001989 872 SKIAILNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLRG--L-KNTAGI---EPEDVAKRLMDYGFHGPTMSWPV 941 (985)
Q Consensus 872 ~~~~~~~a~~l~~~L~~g--~~l~--~~~~~~~~~~~~iv~~~~--~-~~~~g~---~~~~v~~~L~~~Gi~~~~~~~p~ 941 (985)
++..++.++|+++|++. ...+ +.+. + .+ +.+.+.. . +.+... ....+.+++.++|+++...
T Consensus 346 -~~~~~~G~~l~~~L~~l~~~~~v~~vrG~-G-l~--~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~---- 416 (466)
T PRK07030 346 -ENNRALARRMAEATAHLADHPHVAEVRQT-G-MI--LAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPL---- 416 (466)
T ss_pred -HHHHHHHHHHHHHHHHHhcCCCEEEeEec-e-eE--EEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEec----
Confidence 46667788888888652 2211 1121 1 12 2222210 0 000000 1246788889999987533
Q ss_pred CCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 942 PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 942 ~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.+.+|+.|+..+|++|||. ++++++++++.+
T Consensus 417 g~~i~~~Ppl~it~~eid~--~~~~l~~al~~~ 447 (466)
T PRK07030 417 GSVVYFLPPYVITPEQIDF--LAEVASEGIDIA 447 (466)
T ss_pred CCEEEEECCccCCHHHHHH--HHHHHHHHHHHH
Confidence 3689999999999999999 889999999887
No 243
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.70 E-value=2.8e-15 Score=172.29 Aligned_cols=272 Identities=18% Similarity=0.184 Sum_probs=185.6
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---h
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---K 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~ 289 (985)
..++++.+|+++|.+. +.++.+|++++.+++. . + ++||+||+++..|+++...|+.+++..|++++++|. +
T Consensus 49 ~~~le~~la~l~g~~~--~l~~~sG~~al~~~l~-l-l--~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~~ 122 (378)
T TIGR01329 49 RTALESLLAKLDKADR--AFAFSSGMAALDVITR-L-L--NNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTTDLD 122 (378)
T ss_pred HHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHH-H-h--CCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCCCHH
Confidence 4568899999999854 6677888876655332 2 2 389999999999999988887767778999999976 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++++| |++|.+.|+++|+++||++|++++||. .++.+....|.++|+|++++|+ |++++|.
T Consensus 123 ~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~-a~~~~~~~~~l~~g~Di~v~S~tK~l~G~~--- 198 (378)
T TIGR01329 123 KVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDN-TMMSPLLCNPLELGADIVYHSATKFLAGHS--- 198 (378)
T ss_pred HHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEEC-CCcccccCChhhcCCcEEEEecceeccCCc---
Confidence 5666 7889999999998 789999999999999999999999953 4555555667789999999998 7775432
Q ss_pred CCcEEEEEEchh-hHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHH
Q 001989 367 GPHAAFLATSQE-YKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 367 GP~~G~l~~~~~-~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~ 445 (985)
+.-+|+++++++ +.+++. ..++..|+ +. ++. .+ |+...+.+-+..
T Consensus 199 ~~~~G~v~~~~~~~~~~~~-------------------------~~~~~~G~---~~-~~~---~a--~l~~~~l~tl~~ 244 (378)
T TIGR01329 199 DVMAGVLAVKGEEIAKKVY-------------------------FLQNSTGS---GL-APF---DC--WLLLRGIKTLAI 244 (378)
T ss_pred cceeEEEEeCcHHHHHHHH-------------------------HHHHhcCC---cC-CHH---HH--HHHHccCCCHHH
Confidence 122688888653 323331 00111110 00 111 11 334556677888
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeE-Ec-C---C-C-----------CcceEEEecCC---HHHHHHHHHHcCceeee----
Q 001989 446 IAQRVHGLAGTFALGLKKLGTVE-VQ-G---L-P-----------FFDTVKVKCAD---AHAIASAAYKIEMNLRV---- 501 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~-~~-~---~-~-----------~~~~~~~~~~~---~~~v~~~L~~~GI~~~~---- 501 (985)
+.++..+++..+.+.|++...++ +. . . | +...|+|.+.+ +.++.+.|...+|.++.
T Consensus 245 R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~~~~~~~~~~L~~~~i~~s~G~~~ 324 (378)
T TIGR01329 245 RIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSVALSKRLVEATKLFSITVSFGSVN 324 (378)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCcCcccccCCCCCC
Confidence 88888999999999998764332 21 1 1 1 11357777754 66788888655553210
Q ss_pred -----------------------ecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 502 -----------------------VDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 502 -----------------------~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
+.++.+|+|++.-+.++=|+.|-++|.
T Consensus 325 sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~ 374 (378)
T TIGR01329 325 SLISMPCFMSHASIPAEVREERGLPEDLVRLSVGIEDVDDLISDLDIAFV 374 (378)
T ss_pred ceeeCCCccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHH
Confidence 113678898886554444455555554
No 244
>PRK13578 ornithine decarboxylase; Provisional
Probab=99.70 E-value=5.8e-16 Score=185.56 Aligned_cols=283 Identities=11% Similarity=0.074 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHH-HHHhhcCCCeEEEEeCc-
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDI-CITRADGFDIKVVVSDL- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~-~~~~a~~~gi~v~~v~~- 288 (985)
..+.|+|+.+|+++|++.+.+ +++|+|+++.+++++.. ++||+||+++++|.|+... +. ..|++.+++.+
T Consensus 174 G~i~eAq~~AA~~fgAd~tyF-lvNGTS~gn~a~i~a~~---~~Gd~VLvdRN~HKSv~hgaLi----LsGa~PVYl~P~ 245 (720)
T PRK13578 174 GAAKDAQKHAAKVFNADKTYF-VLNGTSASNKVVTNALL---TPGDLVLFDRNNHKSNHHGALI----QAGATPVYLETA 245 (720)
T ss_pred hHHHHHHHHHHHHhCCCceEE-EeCChhHHHHHHHHHhc---CCCCEEEeecccHHHHHHHHHH----HcCCeEEEeecc
Confidence 568899999999999998765 67888889999888753 3899999999999999985 43 25888888743
Q ss_pred ------------hh-----hhc-cC---CC-------EeEEEEEcCCCCeeeccHHHHHHH-HHhCCcEEEEE----ecC
Q 001989 289 ------------KD-----IDY-KS---GD-------VCGVLVQYPGTEGEVLDYGDFIKN-AHANGVKVVMA----TDL 335 (985)
Q Consensus 289 ------------~~-----l~~-l~---~~-------t~~V~v~~pn~~G~v~di~~I~~~-a~~~galliV~----a~~ 335 (985)
++ +++ +. ++ .++|++|+|||+|.+.|+++|+++ +|.++ .++|| ++.
T Consensus 246 ~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTYdG~~ydi~~I~~~~~h~~~-~llvDEAhgah~ 324 (720)
T PRK13578 246 RNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCD-YILFDSAWVGYE 324 (720)
T ss_pred ccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCCcceeecHHHHHHHhhccCC-cEEEeCcchhhh
Confidence 12 443 32 22 689999999999999999999999 68888 88884 222
Q ss_pred ccccC----CCCCCcccce----EEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccc
Q 001989 336 LALTI----LKPPGELGAD----IVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQT 406 (985)
Q Consensus 336 ~~lg~----l~~~~~~GaD----i~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~t 406 (985)
..... .....+.|+| +++.|. |.|++ ++ ++.++++++..++ | .+.|.
T Consensus 325 ~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~a-lT----QaS~LHvk~~~i~-------g-------~~~~v----- 380 (720)
T PRK13578 325 QFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAG-FS----QTSQIHKKDNHIK-------G-------QARYC----- 380 (720)
T ss_pred ccCcccccCChhhhhcCCCCCCeEEEEChhhcchh-hh----hHhhhhcCCcccc-------c-------ccccC-----
Confidence 11121 1122578999 999999 66643 22 3467776544321 1 00000
Q ss_pred ccccccccccCCCccchhHHHHHHHHHHH--HHhC-cchHHHHHHHHHHHHHHHHHHH-hcCCCeEEcCC----------
Q 001989 407 REQHIRRDKATSNICTAQALLANMAAMYA--VYHG-PEGLKTIAQRVHGLAGTFALGL-KKLGTVEVQGL---------- 472 (985)
Q Consensus 407 re~~irre~atsni~t~~~l~a~~aa~~l--~~~g-~~Gl~~i~~~~~~~a~~l~~~L-~~~g~~~~~~~---------- 472 (985)
.+.|...+-.-.-|+++++.++|++-. .++. +.| +++.+...+++..++++| +.+.+++++.+
T Consensus 381 --~~~r~~~al~m~qSTSPsY~LmASLDva~~~m~~~~G-~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~~~~~~ 457 (720)
T PRK13578 381 --PHKRLNNAFMLHASTSPFYPLFAALDVNAKMHEGESG-RRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQD 457 (720)
T ss_pred --CHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHhCCCeeeccccccccccccc
Confidence 011112222223356889999999832 2232 234 567788888999999988 55544776621
Q ss_pred -------------------C------------Ccce--EEEecCC--------------HHHHHHHHHHcCceeeeecCC
Q 001989 473 -------------------P------------FFDT--VKVKCAD--------------AHAIASAAYKIEMNLRVVDSN 505 (985)
Q Consensus 473 -------------------~------------~~~~--~~~~~~~--------------~~~v~~~L~~~GI~~~~~~~~ 505 (985)
. ..++ ++|.+++ +..+.+.|+++||.++..+..
T Consensus 458 ~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~KltI~t~G~~~~~G~~~~~Gipg~~l~~~L~e~gI~~E~~d~~ 537 (720)
T PRK13578 458 YPTEQIASDLRFFSFEPGEKWHGFEGYAEDQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANYLRENGIVPEKCDLN 537 (720)
T ss_pred CchhhhcccccccccccCccccccccccccccccCCceEEEEcCCcCcccccccccCccHHHHHHHHHHcCCEEEecCCC
Confidence 0 1132 4444443 378999998889999988888
Q ss_pred eEEEEeccCCCHHHHHHHHHHHhC
Q 001989 506 TVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 506 ~lris~t~~~t~edId~li~aL~~ 529 (985)
.+++-++..+|++++++|+++|..
T Consensus 538 ~vL~l~s~g~t~~~~~~Lv~aL~~ 561 (720)
T PRK13578 538 SILFLLTPAEDMAKLQQLVAMLAR 561 (720)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999974
No 245
>PRK15029 arginine decarboxylase; Provisional
Probab=99.70 E-value=1.9e-15 Score=183.10 Aligned_cols=304 Identities=13% Similarity=0.070 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
+.|+|+..|++||.+...|.+|++|.|+.++++++. +++|+||+++++|-+....+.+.|++++++++..+
T Consensus 207 I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~--------~~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~~~~ 278 (755)
T PRK15029 207 FGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACM--------TDNDVVVVDRNCHKSIEQGLILTGAKPVYMVPSRNR 278 (755)
T ss_pred HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhc--------CCCCEEEeecccHHHHHHHHHHcCCeEEEecccccc
Confidence 779999999999999988888988888877776553 47899999999999988889999999999975432
Q ss_pred ----CCCC-----HHHHHHHHHhcCCCEE--------EEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccC
Q 001989 713 ----GNIN-----IEELRKAAEANRDNLS--------TLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG 775 (985)
Q Consensus 713 ----g~iD-----~e~L~~~i~~~~~~t~--------~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~ 775 (985)
+.++ ++.++++|+++ ++++ ++++++|++.|++. |+++|+++||++|+.|+||+||. ++..
T Consensus 279 ~Gi~~~i~~~~~~~e~i~~~l~~~-p~~k~~~~~~~~avvlt~PTY~Gv~~-di~~I~~~~h~~~~~llvDEAhG-ah~~ 355 (755)
T PRK15029 279 YGIIGPIYPQEMQPETLQKKISES-PLTKDKAGQKPSYCVVTNCTYDGVCY-NAKEAQDLLEKTSDRLHFDEAWY-GYAR 355 (755)
T ss_pred cCCccCCCccccCHHHHHHHHHhC-chhhhccccCceEEEEECCCCcceee-CHHHHHHHHHhcCCeEEEECccc-cccc
Confidence 4455 99999999765 3444 89999999999998 99999999999999999999984 2222
Q ss_pred CC--CCC---------c-cCCc-EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCC
Q 001989 776 LT--SPG---------Y-IGAD-VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTI 842 (985)
Q Consensus 776 l~--~pg---------~-~g~D-i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i 842 (985)
|. -|. . .|+| +++.|.||+++.- -...++-++.. .+.+....+- +.. .....
T Consensus 356 F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~al-----TQaS~LHv~~~-~~~id~~r~~-------~~l-~~~qS- 420 (755)
T PRK15029 356 FNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNAL-----SQASYIHVREG-RGAINFSRFN-------QAY-MMHAT- 420 (755)
T ss_pred cCccccccccccccccccCCCceEEEEchhhcccch-----hhhhhheeCCC-ccccCHHHHH-------HHH-HHHcC-
Confidence 21 111 2 6899 9999999999531 13345544332 0011100000 000 00001
Q ss_pred CCcchhhhHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHhhccCC------------------------------
Q 001989 843 AAAPWGSALILPISYTYIAM-MGSKGLTEASKIAILNANYMAKRLEKHYP------------------------------ 891 (985)
Q Consensus 843 ~s~~~g~~~~~~~a~a~l~~-lg~eGl~~~~~~~~~~a~~l~~~L~~g~~------------------------------ 891 (985)
+|..|-..+.+-.|..+|+. .|.+ ..++..+.+..++++|.+...
T Consensus 421 TSPSY~LmASLD~ar~~m~~~~G~~----l~~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 496 (755)
T PRK15029 421 TSPLYAICASNDVAVSMMDGNSGLS----LTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFA 496 (755)
T ss_pred CCcHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHHHHHHHHHhccccccccccccccccCcccccccccccccccc
Confidence 11222222333334444443 3433 344556666677777743100
Q ss_pred ------------eeecCC--C--C-------c---eeeEEEEEecCc-----cccCCCCHHHHHHHHHHCCCccCCCCCC
Q 001989 892 ------------ILFRGV--N--G-------T---VAHEFIVDLRGL-----KNTAGIEPEDVAKRLMDYGFHGPTMSWP 940 (985)
Q Consensus 892 ------------l~~~~~--~--~-------~---~~~~~iv~~~~~-----~~~~g~~~~~v~~~L~~~Gi~~~~~~~p 940 (985)
+...++ . + . ...-+++.++++ ..+.|+.+..+.+.|.++||.+-...
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~lDp~Klti~~~~~g~sG~~~~~gip~~~l~~~L~~~gI~~E~~~-- 574 (755)
T PRK15029 497 DAPTKLLTTVQDCWVMHPGESWHGFKDLPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTT-- 574 (755)
T ss_pred ccchhhhccccceeeecccccccCcccccccccccCCceEEEEcCCCCCCCcccccCCcHHHHHHHHHHcCCEEEecC--
Confidence 100000 0 0 0 001123443221 11234455599999988999875433
Q ss_pred CCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 941 VPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 941 ~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
...+.+-++..+|++++++ +++.|.++.+
T Consensus 575 -~~~vL~l~s~g~t~~~~~~--L~~aL~~~~~ 603 (755)
T PRK15029 575 -DFQIMFLFSMGVTRGKWGT--LVNTLCSFKR 603 (755)
T ss_pred -CCeEEEEeCCCCCHHHHHH--HHHHHHHHHH
Confidence 2577778888999999999 6667777644
No 246
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=99.70 E-value=4.2e-15 Score=173.14 Aligned_cols=330 Identities=15% Similarity=0.176 Sum_probs=200.0
Q ss_pred ccccccccCCCccccccccccccccc-cCCCCchhhhhhHHHHHHHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVI 668 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~-~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~ai 668 (985)
..||++++.+..+...+......... .++. +...++.+.++++++-+ ...++.+||++|++++++.+
T Consensus 52 ~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~----------~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklA 121 (425)
T PRK07495 52 VNTGHRHPRVIAAVKAQLDRFTHTCHQVVPY----------ENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIA 121 (425)
T ss_pred hccCCCCHHHHHHHHHHHhhccCcccCccCC----------HHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHH
Confidence 45898888777665554322111111 1111 22446778888887532 24578899999999999999
Q ss_pred HHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC--------c-----EEEEEcCCCC--CC---CCHHHHHHHHHh--c
Q 001989 669 RAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG--------M-----KIVSVGTDAK--GN---INIEELRKAAEA--N 727 (985)
Q Consensus 669 r~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G--------~-----~vv~v~~d~~--g~---iD~e~L~~~i~~--~ 727 (985)
|.| +++.+||. ...+||....+....| + .++.+|.+.+ +. -+++++++.+++ .
T Consensus 122 r~~------tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~ 195 (425)
T PRK07495 122 RAA------TGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVD 195 (425)
T ss_pred HHh------hCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcccccccHHHHHHHHHHHHHhccC
Confidence 876 23456665 7789997654432211 1 3445555321 21 125556777753 2
Q ss_pred CCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCc--------cCCcEEEeCCcccc
Q 001989 728 RDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY--------IGADVCHLNLHKTF 795 (985)
Q Consensus 728 ~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~--------~g~Di~~~s~hK~l 795 (985)
++++++|+++-. ...|++.+ -+++|.++|+++|+++|+|+++. + +.+.+. .-+|++++ .|.+
T Consensus 196 ~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G---~gr~G~~~a~~~~gv~pDi~tl--sK~l 269 (425)
T PRK07495 196 PQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQT-G---FARTGKLFAMEHHEVAADLTTM--AKGL 269 (425)
T ss_pred CCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-c---CCcCCCceeecccCCCCCEEee--hhhh
Confidence 356888887642 23565531 48999999999999999999874 2 323322 23687765 3776
Q ss_pred cccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHH
Q 001989 796 CIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIA 875 (985)
Q Consensus 796 ~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~ 875 (985)
+ ||-.+|++++++++.+.+.... ..+++.|+++.++++.+.+..+..+++. ++.
T Consensus 270 ~-----~G~pigav~~~~~i~~~~~~~~------------------~~~T~~~~pl~~aaa~a~l~~l~~~~l~---~~~ 323 (425)
T PRK07495 270 A-----GGFPLAAVTGRAEIMDAPGPGG------------------LGGTYGGNPLGIAAAHAVLDVIEEEDLC---ERA 323 (425)
T ss_pred c-----CCccceEEEEcHHHHhccCCCC------------------cCCCCCCCHHHHHHHHHHHHHHHhchHH---HHH
Confidence 4 3344777888877765543210 0112344666677777888888665444 456
Q ss_pred HHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCccc-cCC-CCHHHHHHHHHHCCCccCCCCCCCCCEEEEe
Q 001989 876 ILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGLKN-TAG-IEPEDVAKRLMDYGFHGPTMSWPVPGTLMIE 948 (985)
Q Consensus 876 ~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~~~-~~g-~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris 948 (985)
.++.++|+++|++. +..+ +.+. + .+ +.+.+..-.. ... .....+.+.+.++|+++.... +..+.+|+.
T Consensus 324 ~~~g~~l~~~L~~l~~~~~~i~~vrG~-G-l~--~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g-~~~~~~r~~ 398 (425)
T PRK07495 324 NQLGNRLKQRLASLRETVPEIADIRGP-G-FM--NAVEFNDADSGLPSAEFANRVRLKALEKGLILLTCG-VHGNVIRFL 398 (425)
T ss_pred HHHHHHHHHHHHHHHhhCCCeeeeecC-c-eE--EEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeecC-CCCCEEEEe
Confidence 67778888887652 2221 1121 2 22 2233321000 000 013467788889999875432 124799999
Q ss_pred ccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 949 PTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 949 ~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
|+...|++|||+ ++++|++++.++++
T Consensus 399 Ppl~it~~~id~--~~~~l~~~l~~~~~ 424 (425)
T PRK07495 399 APITIQDDVFAE--ALDILEASILEASA 424 (425)
T ss_pred CCCccCHHHHHH--HHHHHHHHHHHHhc
Confidence 999999999999 88999999987764
No 247
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=99.70 E-value=2.4e-15 Score=171.65 Aligned_cols=289 Identities=16% Similarity=0.166 Sum_probs=180.0
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Ccc-ceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSF-SLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~-~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+.+.+++.+..|. +.. ++..++|++ +. ..++..+. ..| .++++|+++.+.+..+...++..|++
T Consensus 36 ~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai---~~~~~~~~-~~g-~~~d~Vl~~~p~y~~~~~~~~~~g~~ 110 (350)
T TIGR03537 36 LGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAI---FHFPLVFI-DPE-EDRRRVIFGTPGYPVYERGALFAGGE 110 (350)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHH---HHHHHHHc-CCC-CCCceEEEcCCCCcchHHHHHhcCCE
Confidence 56666666666676666674 343 566666654 33 33333221 111 12379999998888888888999999
Q ss_pred EEEEcCCC-C-CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEcccccc-ccC-
Q 001989 704 IVSVGTDA-K-GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNA-QVG- 775 (985)
Q Consensus 704 vv~v~~d~-~-g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~-~~~- 775 (985)
++.++.++ + ..+|+++++++++ ++++++++++| |++|.+. + +++|.++|+++|+++++|+++... ...
T Consensus 111 ~~~v~~~~~~~~~~d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~ 186 (350)
T TIGR03537 111 PTAVKLKKEDGFLLRLEKVEKSIL---EETKIVWINYPHNPTGATA-PRSYLKETIAMCREHGIILCSDECYTEIYFGEP 186 (350)
T ss_pred EEEcccCcccCCccCHHHHHHhhh---hccEEEEEeCCCCCcCccc-CHHHHHHHHHHHHHcCcEEEEeccccccccCCC
Confidence 99999863 3 4689999999997 68899999998 5799886 5 899999999999999999987421 111
Q ss_pred CCCCCccCC--cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 776 LTSPGYIGA--DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 776 l~~pg~~g~--Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
......++. .+++.|++|+++.| |.++|++++++++...+.... ...+++++...+
T Consensus 187 ~~~~~~~~~~~~i~~~s~SK~~g~~----GlRiG~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~q---- 244 (350)
T TIGR03537 187 PHSALEVGIENVLAFHSLSKRSGMT----GYRSGFVAGDEKLISFLRKLR--------------ANFGVASPDFVQ---- 244 (350)
T ss_pred CCchhhcCcCCEEEEeecccccCCc----cccceeeecCHHHHHHHHHHH--------------HhhccCCCHHHH----
Confidence 000111222 36677889988543 677999988766554432110 001112111111
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 854 ~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
.++.+.+. ..+.+++..++..++.+.+.+.|++ ++++. .+.+.++ +.++++ .+.+..++++.|.++||
T Consensus 245 ~~~~~~l~--~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~--~~~g~~~--~~~~~~-----~~~~~~~l~~~L~~~gv 313 (350)
T TIGR03537 245 AAAKAAWS--DDNHVLERRKIFKRKRDLFIEFFNKVGLEYL--YPDATFY--LWVKVP-----SGIDAKDYALRLLENGI 313 (350)
T ss_pred HHHHHHhC--CcHHHHHHHHHHHHHHHHHHHHHHHCCCccc--CCCeEEE--EEEECC-----CCCCHHHHHHHHHHCCE
Confidence 11112221 2233445555567777788888876 44332 2222222 235554 13567899999999999
Q ss_pred ccCCC-CCC--CCCEEEEeccCCCCHHHHHH
Q 001989 933 HGPTM-SWP--VPGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 933 ~~~~~-~~p--~~~~lris~t~~~t~eeId~ 960 (985)
.+... .|. ..+++||++. .+.+++++
T Consensus 314 ~v~~g~~f~~~~~~~~Ri~~~--~~~~~~~~ 342 (350)
T TIGR03537 314 VVAPGENFGSGEEGYVRVALV--PTLEECEE 342 (350)
T ss_pred EEcCchhhCCCCCCEEEEEec--CCHHHHHH
Confidence 87542 232 2478999974 56788777
No 248
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=99.70 E-value=2e-15 Score=174.15 Aligned_cols=277 Identities=13% Similarity=0.078 Sum_probs=176.7
Q ss_pred HHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhh--------------------------cC--CCCEEEEcCCCC-
Q 001989 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ--------------------------KG--KKKTFIIASNCH- 265 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~--------------------------~~--~g~~Vlv~~~~H- 265 (985)
.+.+.+.+|+|++.+|+-.++|..+ ..++.+|+.-. ++ +||+|+.-+..|
T Consensus 99 l~~~ra~~lf~a~~anvqp~Sg~~A-n~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~G 177 (493)
T PRK13580 99 EAAEHAKELFGAEHAYVQPHSGADA-NLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSG 177 (493)
T ss_pred HHHHHHHHHhCCCcccccCCCcHHH-HHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCC
Confidence 3457788999999988877766544 44555554210 00 178988665443
Q ss_pred -------hhHHHHHHHhhcCCCeEE--EEeCchhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecC
Q 001989 266 -------PQTIDICITRADGFDIKV--VVSDLKDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDL 335 (985)
Q Consensus 266 -------~s~~~~~~~~a~~~gi~v--~~v~~~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~ 335 (985)
+.+.......+..+|++- -.+|++++++ +.+++..|++.+.+.+|.+.|+++|.++||++|++++|| ..
T Consensus 178 GHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~~plvii~g~S~~~~~~dl~~i~eia~~~gA~L~VD-~A 256 (493)
T PRK13580 178 GHLTHGFRPNISGKMFHQRSYGVDPDTGLLDYDEIAALAREFKPLILVAGYSAYPRRVNFAKLREIADEVGAVLMVD-MA 256 (493)
T ss_pred CeeecCcccchhhheeeeEecccCcccCccCHHHHHHHHhhcCCEEEEeCccccCCCcCHHHHHHHHHHcCCEEEEE-Cc
Confidence 222222111122334332 1245677777 778888888887544466789999999999999999994 34
Q ss_pred ccccCCCC---C----CcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccc
Q 001989 336 LALTILKP---P----GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTR 407 (985)
Q Consensus 336 ~~lg~l~~---~----~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tr 407 (985)
+++|++.- + ...++||+++++ |+|++ |..||+++++++.+++.- ..+ |.+
T Consensus 257 H~~Gligg~~~~~~~~~~~~~D~vtgT~hKaL~G------P~GG~I~~~~~l~~~L~~----------a~P-~i~----- 314 (493)
T PRK13580 257 HFAGLVAGKVFTGDEDPVPHADIVTTTTHKTLRG------PRGGLVLAKKEYADAVDK----------GCP-LVL----- 314 (493)
T ss_pred hhhceeccccchhhcCCCCCCcEEEeCChhhccC------CCeEEEEecHHHHHHHhh----------CCC-ccc-----
Confidence 56665431 1 123799999998 77754 445899999988776610 000 100
Q ss_pred cccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC-CCCcceEEEecCC--
Q 001989 408 EQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG-LPFFDTVKVKCAD-- 484 (985)
Q Consensus 408 e~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~~-- 484 (985)
+++.. +...+.+.++ ..+...+.++.+++..+++++|++.|.+.| ++++. ....+.+.+.+.+
T Consensus 315 --------gg~l~---p~iAA~avAl--~e~~~~ef~~y~~~l~~Na~~La~~L~~~G-~~vv~ggTdshIV~V~lg~~~ 380 (493)
T PRK13580 315 --------GGPLP---HVMAAKAVAL--AEARTPEFQKYAQQVVDNARALAEGFLKRG-ARLVTGGTDNHLVLIDVTSFG 380 (493)
T ss_pred --------CCCcc---HHHHHHHHHH--HHHhCccHHHHHHHHHHHHHHHHHHHHhcC-CCccCCCCCCCEEEEEeCCHH
Confidence 11111 2222222222 233233457789999999999999999998 88863 2233455565543
Q ss_pred --HHHHHHHHHHcCceeeee----------cCCeEEEEeccCC----CHHHHHHHHHHHhC
Q 001989 485 --AHAIASAAYKIEMNLRVV----------DSNTVTASFDETT----TLEDVDKLFIVFAG 529 (985)
Q Consensus 485 --~~~v~~~L~~~GI~~~~~----------~~~~lris~t~~~----t~edId~li~aL~~ 529 (985)
...+.+.|.+.||.+... ....||+++++.+ +++||+++++.|..
T Consensus 381 ~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~ 441 (493)
T PRK13580 381 LTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVK 441 (493)
T ss_pred HHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHH
Confidence 346778999999987432 1467999999944 69999999999974
No 249
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.70 E-value=3e-15 Score=172.78 Aligned_cols=306 Identities=14% Similarity=0.097 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-C
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA-K 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~-~ 712 (985)
..++++.+++++|.+.. +.+++|++|...++.++ +.++||+||++...|......+...|++++.+++++ +
T Consensus 31 ~~~le~~la~~~g~~~~-v~~~sgt~al~~~l~al-------~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 102 (380)
T TIGR03588 31 VPAFEEALAEYVGAKYA-VAFNSATSALHIACLAL-------GVGPGDRVWTTPITFVATANCALYCGAKVDFVDIDPDT 102 (380)
T ss_pred HHHHHHHHHHHHCCCeE-EEEcCHHHHHHHHHHHc-------CCCCCCEEEeCCcchHHHHHHHHHcCCEEEEEecCCCc
Confidence 34788899999998764 44567777664444332 124789999998877666666778999999999965 5
Q ss_pred CCCCHHHHHHHHHhcC-CCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCC----cEE
Q 001989 713 GNINIEELRKAAEANR-DNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGA----DVC 787 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~-~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~----Di~ 787 (985)
+.+|++++++++++.+ ++|++|+++++ +|... |+++|.++|+++|+++++|++|+.+.. + ....+|. |+.
T Consensus 103 ~~~d~~~l~~~i~~~~~~~t~~v~~~~~--~G~~~-~~~~i~~l~~~~~~~lI~D~a~a~g~~-~-~~~~~g~~~~~d~~ 177 (380)
T TIGR03588 103 GNIDEDALEKKLAAAKGKLPKAIVPVDF--AGKSV-DMQAIAALAKKHGLKIIEDASHALGAE-Y-GGKPVGNCRYADAT 177 (380)
T ss_pred CCcCHHHHHHHhhcccCCCceEEEEeCC--CCccC-CHHHHHHHHHHcCCEEEEECCCcccCc-c-CCEeCCCccccceE
Confidence 7899999999997321 36888888764 68877 899999999999999999999975432 2 1122334 999
Q ss_pred EeCCc--ccccccCCCCCCceEEEEEc-ccccCcCCC-CccccCCCC---C-----CCCCCCCCCCCCCcchhhhHHHHH
Q 001989 788 HLNLH--KTFCIPHGGGGPGMGPIGVK-KHLAPFLPS-HPVVSTGGI---P-----APEKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 788 ~~s~h--K~l~~p~g~GGPg~G~i~~~-~~l~~~lp~-~~~g~~~~~---~-----~~~~~~~~~~i~s~~~g~~~~~~~ 855 (985)
++|+| |+++. +.+|+++.+ +++.+.+.. +..|...+. . .+..+... +..++.-....++.
T Consensus 178 ~~S~~~~K~~~~------~~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~g~n~~m~~l~aa~ 249 (380)
T TIGR03588 178 VFSFHPVKIITT------AEGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQE--LGFNYRMTDIQAAL 249 (380)
T ss_pred EEecCCCCcccc------cCceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeec--cccccCccHHHHHH
Confidence 99998 77742 234555554 444332210 000110000 0 00000000 00000001111111
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc--CCeeecCCC-CceeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 856 SYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH--YPILFRGVN-GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 856 a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g--~~l~~~~~~-~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
+.+-| +.+.+..++..++++++.+.|.+. +.+...... ....+.+.+.+.. ..+.+.+++.+.|.++||
T Consensus 250 g~~qL-----~~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~r~~l~~~L~~~gI 321 (380)
T TIGR03588 250 GLSQL-----KKLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQ---EFGCTRKEVFEALRAAGI 321 (380)
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECC---cCCCCHHHHHHHHHHCCC
Confidence 11112 335666677788899999999863 222111111 1122334444431 024578899999999999
Q ss_pred ccCCCCCC---------------C-------CCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 933 HGPTMSWP---------------V-------PGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 933 ~~~~~~~p---------------~-------~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
.+.....| . ...+++.++...|++||++ .+++++++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~--i~~~l~~~ 379 (380)
T TIGR03588 322 GVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQR--VVETLRKV 379 (380)
T ss_pred CcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHH--HHHHHHHh
Confidence 76421111 1 2568888888899999999 77777765
No 250
>PRK08064 cystathionine beta-lyase; Provisional
Probab=99.70 E-value=2.8e-15 Score=173.05 Aligned_cols=279 Identities=17% Similarity=0.184 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH----HHHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP----ATAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~----~~a~~~G~~vv~v~~ 709 (985)
..++++.++++.|.+. .+.+++|+.++.+++. .. .++|+||+++..|+... ..++..|++++.++.
T Consensus 56 ~~~le~~lA~l~g~~~-~v~~~sG~~ai~~~l~----~l-----~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 125 (390)
T PRK08064 56 REALEDIIAELEGGTK-GFAFASGMAAISTAFL----LL-----SKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDM 125 (390)
T ss_pred HHHHHHHHHHHhCCCC-eEEECCHHHHHHHHHH----Hh-----CCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECC
Confidence 4578899999999875 4556788776643332 11 36789999888776433 224568999999987
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++++++++ ++|++|++++|+ ++|.+. |+++|+++||++|++++||+++..+. ...|.++|+|+++
T Consensus 126 ~-----d~~~l~~~l~---~~tklV~l~~p~NptG~~~-dl~~I~~la~~~g~~vvvD~a~~~~~--~~~~~~~g~Divv 194 (390)
T PRK08064 126 T-----NLEEVAQNIK---PNTKLFYVETPSNPLLKVT-DIRGVVKLAKAIGCLTFVDNTFLTPL--LQKPLDLGADVVL 194 (390)
T ss_pred C-----CHHHHHHhcC---CCceEEEEECCCCCCcEec-cHHHHHHHHHHcCCEEEEECCCCccc--ccCchhhCCcEEE
Confidence 4 7999999997 789999999995 799998 99999999999999999999875322 2345678999999
Q ss_pred eCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.|+||+++.+ +|-..|++++++ ++.+.+.... ...+...+ ...+|..+ .|.+.
T Consensus 195 ~S~tK~~~G~---~~~laG~~v~~~~~~~~~l~~~~-------------~~~g~~~~--------~~~a~l~~--~gl~t 248 (390)
T PRK08064 195 HSATKFLAGH---SDVLAGLAVVKDEELAQKLYFLQ-------------NSFGAVLG--------VQDCWLVL--RGLKT 248 (390)
T ss_pred eecceeccCC---ccceeEEEEeCCHHHHHHHHHHH-------------HhcCCCCC--------HHHHHHHH--cccCc
Confidence 9999998522 111257777763 4444332110 00111111 11233332 34444
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc---CCeeecCCCC------------ceeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 868 LTEASKIAILNANYMAKRLEKH---YPILFRGVNG------------TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g---~~l~~~~~~~------------~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
+..+.++..+++..+.+.|++. ..+.+++-.+ .....+.+.+. + .+++.+.+...++
T Consensus 249 l~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~------~--~~~~~~f~~~l~l 320 (390)
T PRK08064 249 LHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQ------S--EEAVRQFVSHVKL 320 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEEC------C--HHHHHHHHHhCCc
Confidence 5677788889999999999863 2333432110 01112233332 2 3344444444455
Q ss_pred c-----cCC----C---------CCC--------C-CCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 933 H-----GPT----M---------SWP--------V-PGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 933 ~-----~~~----~---------~~p--------~-~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
. .++ + ..+ + ++.+|+|+...++++.|+. +.++|++
T Consensus 321 ~~~~~s~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~d--l~~Al~~ 382 (390)
T PRK08064 321 PVFAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIAD--FEQALSY 382 (390)
T ss_pred ceEcccCCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHH--HHHHHHh
Confidence 2 111 0 011 2 4789999999999999999 5555554
No 251
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=99.69 E-value=5.8e-16 Score=176.86 Aligned_cols=296 Identities=11% Similarity=0.028 Sum_probs=177.4
Q ss_pred hHHHHHHHHHHHHHHHhCCCc---cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCC
Q 001989 629 GYQEMFNNLGEWLCTITGFDS---FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCG 701 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~---~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G 701 (985)
-+.+.++++++.+++++|.+. +.|..+||+.+++++.. ++. .++ .++++|++. .+.. .++..|
T Consensus 41 ~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~---~l~-~~~-~~~~~i~~g-----~~~~~~~~~a~~~g 110 (355)
T cd00611 41 DFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPL---NLL-GDK-GTADYVVTG-----AWSAKAAKEAKRYG 110 (355)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHH---hcC-CCC-CeEEEEECC-----HHHHHHHHHHHhcC
Confidence 345778899999999999743 23444667877754443 321 112 244545442 2222 457789
Q ss_pred cEEEEEcCCCCCCC-C-HHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCC
Q 001989 702 MKIVSVGTDAKGNI-N-IEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS 778 (985)
Q Consensus 702 ~~vv~v~~d~~g~i-D-~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~ 778 (985)
++++.++++++|.. + ++..+..++ +++++|.+++. |.+|+.. .+ +++.+|++++||++|+++...+ +
T Consensus 111 ~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~lV~~~h~~t~tG~~~---~~---i~~~~g~~~~VDa~qs~g~~~i-d 180 (355)
T cd00611 111 GVVVIVAAKEEGKYTKIPDVETWDLA---PDAAYVHYCSNETIHGVEF---DE---VPDTGGVPLVADMSSNILSRPI-D 180 (355)
T ss_pred CCcEEEecccccCCCCCCCHhhcCCC---CCCCEEEEeCCcccccEEc---ce---ecccCCCeEEEEccccccCCCC-C
Confidence 99999998655433 4 333333344 78899988885 5689874 33 4455999999999997655443 3
Q ss_pred CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC---CCCCCCCCCCCCCCcchhhhHHHHH
Q 001989 779 PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI---PAPEKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 779 pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~---~~~~~~~~~~~i~s~~~g~~~~~~~ 855 (985)
..+++ +++.++||+| |.||+|++++++++.+.+++..... .+. .......+|+++. .+.+
T Consensus 181 v~~~~--~~~ss~~K~l------GP~G~g~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Tpn~~--------~i~~ 243 (355)
T cd00611 181 VSKFG--VIYAGAQKNL------GPAGVTVVIVRKDLLGKARKITPSM-LNYKTHADNNSLYNTPPTF--------AIYM 243 (355)
T ss_pred HHHhC--EEEeeccccc------CCCceEEEEECHHHHhhcccCCCCc-ccHHHHHhcCCCCCCChHH--------HHHH
Confidence 44444 5667789987 3468999999987765544321100 000 0000011222221 1122
Q ss_pred HHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHhhccCCee-ec-CCCCceeeEEEEEecCccccCCC-CHHHHHHHHHHCC
Q 001989 856 SYTYIAMMGSK-GLTEASKIAILNANYMAKRLEKHYPIL-FR-GVNGTVAHEFIVDLRGLKNTAGI-EPEDVAKRLMDYG 931 (985)
Q Consensus 856 a~a~l~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~g~~l~-~~-~~~~~~~~~~iv~~~~~~~~~g~-~~~~v~~~L~~~G 931 (985)
..+.++.+..+ |++++.++..+++++++++|++..++. .. .+.......+.+.++ +. ...++.+.+.+.|
T Consensus 244 L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~------~~~l~~~~~~~~~r~G 317 (355)
T cd00611 244 MGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLG------KEELEKEFLKEAEAAG 317 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcC------ChhhhHHHHHHHHHCC
Confidence 23456666666 688888899999999999998732331 11 111111111333433 22 1245556677799
Q ss_pred CccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 932 FHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 932 i~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
+++..... ..+.+|+|+..++|+||||+ +++.|+++
T Consensus 318 ~~~~~~~~-~~g~vR~S~~~~nt~edi~~--l~~al~~~ 353 (355)
T cd00611 318 MIGLKGHR-SVGGIRASIYNALSLEGVQA--LADFMKEF 353 (355)
T ss_pred CcccCCCc-ccCeEEEEccCCCCHHHHHH--HHHHHHHH
Confidence 98543321 24899999999999999999 76777663
No 252
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=99.69 E-value=4.4e-15 Score=172.65 Aligned_cols=295 Identities=15% Similarity=0.188 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHh-cCC-CCCCEEEE-cCCCCcccHHHHHHCCc-------
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKA-RGD-HHRNVCII-PVSAHGTNPATAAMCGM------- 702 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~-~g~-~~~~~IIv-~~~~Hg~~~~~a~~~G~------- 702 (985)
...++++.+++++|.+. .++++||++|+++++..++.+... +|. ..+++||+ ...+||.........+-
T Consensus 74 ~~~~~~~~l~~~~~~~~-~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~ 152 (400)
T PTZ00125 74 VLGLAEKYITDLFGYDK-VLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNF 152 (400)
T ss_pred HHHHHHHHHHhCCCCCE-EEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccC
Confidence 46688899999988764 467789999999999888765322 221 12355665 66788877655433221
Q ss_pred -----EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccc
Q 001989 703 -----KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 703 -----~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~ 773 (985)
.+..+++ .|+++|+++++ .+++++|+++.+ |.+|++.++ +++|.++|+++|+++++|+++. ++
T Consensus 153 ~~~~~~~~~~~~-----~d~~~le~~l~--~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~-g~ 224 (400)
T PTZ00125 153 GPFVPGFELVDY-----NDVEALEKLLQ--DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQT-GL 224 (400)
T ss_pred CCCCCCceEeCC-----CCHHHHHHHhC--CCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CC
Confidence 1222332 48999999995 257999988765 578988622 9999999999999999999873 33
Q ss_pred c--CCC-CC--CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 774 V--GLT-SP--GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 774 ~--~l~-~p--g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
+ +-. .. ....+|+++++ |+|+ +|++++|++++++++.+.+.....+ . ++.+
T Consensus 225 g~~G~~~~~~~~~~~pd~~~~s--K~l~----~g~~~ig~v~~~~~~~~~~~~~~~~------------~------t~~~ 280 (400)
T PTZ00125 225 GRTGKLLAHDHEGVKPDIVLLG--KALS----GGLYPISAVLANDDVMLVIKPGEHG------------S------TYGG 280 (400)
T ss_pred CccchhhHHHhcCCCCCEEEEc--cccc----CCCcCcEEEEEcHHHHhhccCCCCC------------C------CCCc
Confidence 2 100 01 11236888764 8884 3445789999998876654321100 0 1112
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCccccCCCCHHHH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDV 923 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v 923 (985)
++..++++.+.++.+..+++. ++..++.++++++|++. .... ..+ .+. + +.+.++. ..+....++
T Consensus 281 ~~~~~~aa~~~l~~i~~~~~~---~~~~~~~~~l~~~l~~l~~~~~~~~~~~~-~g~-~--~~v~~~~---~~~~~~~~~ 350 (400)
T PTZ00125 281 NPLACAVAVEALEVLKEEKLA---ENAQRLGEVFRDGLKELLKKSPWVKEIRG-KGL-L--NAIVFDH---SDGVNAWDL 350 (400)
T ss_pred CHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHhcCCCeEEEec-ccE-E--EEEEEcc---CcchHHHHH
Confidence 333444455566666544443 34455677777777652 1211 111 121 2 2233321 012356789
Q ss_pred HHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 924 AKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 924 ~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+++|.++|+.+.... .+.+||+++..++++||++ +++.|.+++.+++
T Consensus 351 ~~~l~~~Gv~v~~~~---~~~lRi~~~~~~~~~~i~~--~l~~l~~~l~~~~ 397 (400)
T PTZ00125 351 CLKLKENGLLAKPTH---DNIIRFAPPLVITKEQLDQ--ALEIIKKVLKSFD 397 (400)
T ss_pred HHHHHHCCeEEeecC---CCEEEEECCccCCHHHHHH--HHHHHHHHHHHHh
Confidence 999999999875322 3789999999999999999 8899988887764
No 253
>PRK06290 aspartate aminotransferase; Provisional
Probab=99.69 E-value=4.5e-15 Score=172.66 Aligned_cols=305 Identities=13% Similarity=0.111 Sum_probs=192.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCC---cc-ceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCc
Q 001989 628 QGYQEMFNNLGEWLCTITGFD---SF-SLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGM 702 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~---~~-~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~ 702 (985)
+|..++.+.+.+++.+.+|.+ .. ++..++|++ +.. .+++.+ ..+++.|+++.+.+..+...++..|+
T Consensus 81 ~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~---~~~~~~-----~~~gd~Vlv~~P~y~~~~~~~~~~g~ 152 (410)
T PRK06290 81 NGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALA---MLPSCF-----INPGDVTLMTVPGYPVTGTHTKYYGG 152 (410)
T ss_pred CCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHH---HHHHHh-----CCCCCEEEEeCCCCccHHHHHHHcCC
Confidence 466666666666666666654 33 466666665 332 223322 14788999999877777777889999
Q ss_pred EEEEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cC-
Q 001989 703 KIVSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VG- 775 (985)
Q Consensus 703 ~vv~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~- 775 (985)
+++.+|.+++ +.+|++++++++. +++++|++++| |++|.+.+ .+++|.++|+++|+++++|.++.... .+
T Consensus 153 ~v~~v~~~~~~~~~~d~~~l~~~~~---~~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~ 229 (410)
T PRK06290 153 EVYNLPLLEENNFLPDLDSIPKDIK---EKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGK 229 (410)
T ss_pred EEEEEecCCCcCCcCCHHHHHHhhc---ccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCC
Confidence 9999999753 5679999999887 68899999999 57999972 36888889999999999999874211 11
Q ss_pred CCC----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 776 LTS----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 776 l~~----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
... ....+.+|++.|+.|.|++| |.++|++++++++...+.... ...+.+++ ..
T Consensus 230 ~~s~~~~~~~~~~~I~i~SfSK~~g~~----GlRiG~ii~~~~l~~~l~~~~--------------~~~~~~~~----~~ 287 (410)
T PRK06290 230 PLSFLSVPGAKEVGVEIHSLSKAYNMT----GWRLAFVVGNELIVKAFATVK--------------DNNDSGQF----IA 287 (410)
T ss_pred CcChhcCCCccccEEEEeechhhcCCc----hhheEeEEeCHHHHHHHHHHH--------------hccccCCc----HH
Confidence 000 11123568888999988654 678999998877654432110 00011110 01
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCcc-cc-CCCCHHHHHHHHH
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLK-NT-AGIEPEDVAKRLM 928 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~-~~-~g~~~~~v~~~L~ 928 (985)
...++..+|.. .+-+++..++..++++++.+.|++ ++.+ ..+.+.++ +.+.++.-. .. ...+..+++++|.
T Consensus 288 ~q~aa~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~--~~p~g~f~--l~v~lp~~~~~~~~~~~~~~~~~~Ll 361 (410)
T PRK06290 288 IQKAGIYALDH--PEITEKIREKYSRRLDKLVKILNEVGFKA--EMPGGTFY--LYVKAPKGTKSGIKFENAEEFSQYLI 361 (410)
T ss_pred HHHHHHHHhhC--cHHHHHHHHHHHHHHHHHHHHHHhCCCee--cCCCeeeE--EEEECCCccccCCCCCCHHHHHHHHH
Confidence 11112222321 122344455567778889998887 3332 22222222 234554100 00 0025788999999
Q ss_pred HCCCccC--CCCCCCCCEEEEecc-CCCCHHHHHHHHccCChhHHHHhhc
Q 001989 929 DYGFHGP--TMSWPVPGTLMIEPT-ESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 929 ~~Gi~~~--~~~~p~~~~lris~t-~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
++|+++. ...+ .+++||+++ ...++|+.++ ++++|++.+.++.
T Consensus 362 ~~~~v~~~p~~~~--~~~lRi~~~~~~~~~~~~~~--~~~~l~~~~~~~~ 407 (410)
T PRK06290 362 KEKLISTVPWDDA--GHFLRFSVTFEAKDEEEEDR--ILEEIKRRLSDVE 407 (410)
T ss_pred HhCCEEEECCccc--cCeEEEEEEcccccccchhH--HHHHHHHHHhhcc
Confidence 9876542 1122 378999996 4568889999 7888988887653
No 254
>PRK07582 cystathionine gamma-lyase; Validated
Probab=99.69 E-value=5.6e-15 Score=169.18 Aligned_cols=272 Identities=19% Similarity=0.129 Sum_probs=184.1
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchhhh-
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDID- 292 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~- 292 (985)
.++++.+|++.+ .++.++.+|++++.+++.++ + ++||+||++...|..+...++..++..|+++++++.++..
T Consensus 54 ~~Le~~lA~l~~---~~~v~~~sG~~Ai~~~l~al-l--~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~~~ 127 (366)
T PRK07582 54 RALEAALGELEG---AEALVFPSGMAAITAVLRAL-L--RPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAGMAE 127 (366)
T ss_pred HHHHHHHHHHcC---CCEEEECCHHHHHHHHHHHh-c--CCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCCChHH
Confidence 456789999993 34667788888777766654 3 3899999999888777666544445689999999875433
Q ss_pred ccCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCCCcE
Q 001989 293 YKSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGGPHA 370 (985)
Q Consensus 293 ~l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~ 370 (985)
.+.++|++|++.+| |++|.+.|+++|+++||++|++++||. .++.+....|.++|+|++++|+ |++++|- |--+
T Consensus 128 ~~~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~-t~~~~~~~~p~~~g~Divv~S~sK~l~G~~---g~~~ 203 (366)
T PRK07582 128 AALAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDN-TTATPLGQRPLELGADLVVASDTKALTGHS---DLLL 203 (366)
T ss_pred HhccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEEC-CCCCccccCchhcCCcEEEecccccccCCC---CeeE
Confidence 24468999999998 688999999999999999999999953 3322223346679999999998 7765431 2225
Q ss_pred EEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHH
Q 001989 371 AFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQR 449 (985)
Q Consensus 371 G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~ 449 (985)
|+++++ +++.+++.. .++..|. +.+++ .+ |+...|-+-++.+.++
T Consensus 204 G~v~~~~~~l~~~l~~-------------------------~~~~~g~----~~~~~---~a--~l~~r~l~tl~~R~~~ 249 (366)
T PRK07582 204 GYVAGRDPELMAAVER-------------------------WRLLAGA----IPGPF---EA--WLAHRSLGTLGLRFAR 249 (366)
T ss_pred EEEEcCcHHHHHHHHH-------------------------HHHHhCC----CCCHH---HH--HHHHhccccHHHHHHH
Confidence 888875 455444310 0011010 01122 11 2344444556777788
Q ss_pred HHHHHHHHHHHHhcCCCeEEcC------CC-----------CcceEEEecCCHHHHHHHHHHcCceee--------e---
Q 001989 450 VHGLAGTFALGLKKLGTVEVQG------LP-----------FFDTVKVKCADAHAIASAAYKIEMNLR--------V--- 501 (985)
Q Consensus 450 ~~~~a~~l~~~L~~~g~~~~~~------~~-----------~~~~~~~~~~~~~~v~~~L~~~GI~~~--------~--- 501 (985)
..+++..+++.|++...++-+. .| +...|+|.+++.+++.+.|...++... .
T Consensus 250 ~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~ 329 (366)
T PRK07582 250 QCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELADAAAAERFVAASRLVVAATSFGGVHTSAD 329 (366)
T ss_pred HHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeCCHHHHHHHHHhCCcceecccCCCccchhh
Confidence 8899999999999885454321 12 223577777666666677766666431 1
Q ss_pred --------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 --------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 --------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.++.||+|++..++++.|+.|.++|..
T Consensus 330 ~~~~~~~~~~~~liR~svGlE~~~dli~dl~~al~~ 365 (366)
T PRK07582 330 RRARWGDAVPEGFVRLSCGIEDTDDLVADLERALDA 365 (366)
T ss_pred hHHHcCCCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 1236799999999999999999999863
No 255
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=99.69 E-value=6.4e-15 Score=167.83 Aligned_cols=299 Identities=16% Similarity=0.131 Sum_probs=197.9
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhh
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI 250 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~ 250 (985)
++.|.++...|+.+.+++.+..+..+.|.+- ++ .++++.+|+++|+++.++.+++|++.++..++.++.
T Consensus 24 l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~-----~~-----~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l~- 92 (346)
T TIGR01141 24 LNSNENPFGPPPKAKEALRAEADKLHRYPDP-----DP-----AELKQALADYYGVDPEQILLGNGSDEIIELLIRAFL- 92 (346)
T ss_pred ccCCCCCCCCCHHHHHHHHHhHHHhhcCCCC-----CH-----HHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHhc-
Confidence 3566667777777765555422222333211 11 468899999999988899999999988766665542
Q ss_pred hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHH
Q 001989 251 QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIK 320 (985)
Q Consensus 251 ~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~ 320 (985)
++||+|++++..|+.+...++ ..|++++.++. +++++ +++++++|++++| |.+|.+.|++++.+
T Consensus 93 --~~gd~v~~~~p~y~~~~~~~~----~~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~ 166 (346)
T TIGR01141 93 --EPGDAVLVPPPTYSMYEISAK----IHGAEVVKVPLDEDGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEA 166 (346)
T ss_pred --CCCCEEEEcCCCHHHHHHHHH----HcCCeEEEeccCCCCCCCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence 378999999988876655443 46888888754 34444 5778999999988 78999999999999
Q ss_pred HHHhC--CcEEEEEecCcc-ccCCCCC----CcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeee
Q 001989 321 NAHAN--GVKVVMATDLLA-LTILKPP----GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSI 392 (985)
Q Consensus 321 ~a~~~--galliV~a~~~~-lg~l~~~----~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~ 392 (985)
+++.+ |+++++|. ..+ +.....+ ...+-+|+++|. |+|+. +|..+|++++++++++++....
T Consensus 167 l~~~~~~~~~ii~D~-~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~----- 236 (346)
T TIGR01141 167 VLERTPEDALVVVDE-AYGEFSGEPSTLPLLAEYPNLIVLRTLSKAFGL----AGLRIGYAIANAEIIDALNKVR----- 236 (346)
T ss_pred HHHhCCCCcEEEEEC-chhhhcCCccHHHHHhhCCCEEEEehhhHhhhc----hhhhceeeecCHHHHHHHHhcc-----
Confidence 99887 99999843 222 2111011 122335667776 87753 3456899999888777652100
Q ss_pred cCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC
Q 001989 393 DSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL 472 (985)
Q Consensus 393 d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~ 472 (985)
.+.+. ++....+..+ ++.. ...++++.++..++.+++++.|+++.|+++...
T Consensus 237 -----------------------~~~~~-~~~~~~~~~~--~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 288 (346)
T TIGR01141 237 -----------------------APFNL-SRLAQAAAIA--ALRD--DDFIEKTVEEINAERERLYDGLKKLPGLEVYPS 288 (346)
T ss_pred -----------------------CCCCC-CHHHHHHHHH--HhCC--HHHHHHHHHHHHHHHHHHHHHHHhcCCCEECCC
Confidence 00111 1111111111 1121 124778888889999999999998833876532
Q ss_pred CCcceEEEecCC-HHHHHHHHHHcCceeeeec-----CCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 473 PFFDTVKVKCAD-AHAIASAAYKIEMNLRVVD-----SNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 473 ~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~~~-----~~~lris~t~~~t~edId~li~aL~ 528 (985)
...-+.+..+. ..++.++|.++||.+.... ++.+|+|++ |++|+++++++|+
T Consensus 289 -~g~~~~~~~~~~~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~---~~~~i~~~~~~l~ 346 (346)
T TIGR01141 289 -DANFVLIRFPRDADALFEALLEKGIIVRDLNSYPGLPNCLRITVG---TREENDRFLAALR 346 (346)
T ss_pred -cCCEEEEecCCCHHHHHHHHHHCCeEEEeCCCcCCCCCeEEEecC---CHHHHHHHHHHhC
Confidence 12234455553 8889999999999875432 588999976 8999999999874
No 256
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=99.69 E-value=7.5e-16 Score=174.74 Aligned_cols=286 Identities=20% Similarity=0.236 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
+.|.|+.+|+++|.+...|..|+++.|+.++++++. +++|+||+++.+|-+....+.+.|+++++++...+
T Consensus 68 I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~--------~~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p~~~~ 139 (417)
T PF01276_consen 68 IKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALC--------RPGDKVLVDRNCHKSVYNALILSGAIPVYIPPEDNE 139 (417)
T ss_dssp HHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHT--------TTTCEEEEETT--HHHHHHHHHHTEEEEEEEEEE-T
T ss_pred HHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhc--------CCCCEEEEcCCcHHHHHHHHHHcCCeEEEecCCccc
Confidence 779999999999999988888888889988877664 47899999999999888888999999999977421
Q ss_pred ----CCCCH-----HHHHHHHHhcCCCEE---EEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC---
Q 001989 713 ----GNINI-----EELRKAAEANRDNLS---TLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT--- 777 (985)
Q Consensus 713 ----g~iD~-----e~L~~~i~~~~~~t~---~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~--- 777 (985)
+.+++ +.++++|+++ ++.+ +|++++|++.|++. |+++|+++||++|..|+||+||. ++..|.
T Consensus 140 ~gi~~~i~~~~~~~~~i~~~l~~~-p~~k~~~~vvlt~PTY~Gv~~-di~~I~~~~h~~~~~llvDEAhG-ah~~F~~lp 216 (417)
T PF01276_consen 140 YGIIGGISPDEFNEEDIEEALKEH-PDAKAPRLVVLTSPTYYGVCY-DIKEIAEICHKHGIPLLVDEAHG-AHFGFHPLP 216 (417)
T ss_dssp TS-BEEB-GGGGSHHHHHHHHHHC-TTCHCESEEEEESS-TTSEEE--HHHHHHHHCCTECEEEEE-TT--TTGGCSGGG
T ss_pred cCCccCCChhhhhHHHHHHHHHhC-ccccCceEEEEeCCCCCeEEE-CHHHHHHHhcccCCEEEEEcccc-ccccCCCCc
Confidence 34667 9999999876 4444 49999999999999 99999999999999999999984 333332
Q ss_pred -CCCccCCc-------EEEeCCcccccccCCCCCCceEEEEEcccc-cC--cCCCCccccCCCCCCCCCCCCCCCCCCcc
Q 001989 778 -SPGYIGAD-------VCHLNLHKTFCIPHGGGGPGMGPIGVKKHL-AP--FLPSHPVVSTGGIPAPEKSQPLGTIAAAP 846 (985)
Q Consensus 778 -~pg~~g~D-------i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l-~~--~lp~~~~g~~~~~~~~~~~~~~~~i~s~~ 846 (985)
..-.+|+| +++.|.||+++.- -..++|-++... .. .+.. .+.. -..| |..
T Consensus 217 ~~a~~~gad~~~~~~~~vvqS~HKtL~al-----tQts~lh~~~~~~v~~~~~~~-~l~~---------~~TT----SPS 277 (417)
T PF01276_consen 217 RSALALGADRPNDPGIIVVQSTHKTLPAL-----TQTSMLHVKGDRIVDHERVNE-ALSM---------HQTT----SPS 277 (417)
T ss_dssp TTCSSTTSS-CTSBEEEEEEEHHHHSSS------TT-EEEEEETCCCTTHHHHHH-HHHH---------HS-S----S--
T ss_pred cchhhccCccccccceeeeechhhccccc-----ccceEEEecCCCcccHHHHHH-HHHH---------HcCC----ChH
Confidence 22457899 9999999998521 256777776543 21 1100 0000 0011 111
Q ss_pred hhhhHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHhh---c--cCCeee----cCCC------------------
Q 001989 847 WGSALILPISYTYIAMM-GSKGLTEASKIAILNANYMAKRLE---K--HYPILF----RGVN------------------ 898 (985)
Q Consensus 847 ~g~~~~~~~a~a~l~~l-g~eGl~~~~~~~~~~a~~l~~~L~---~--g~~l~~----~~~~------------------ 898 (985)
|-..+.+-.|. ..+ +.+| ++..++..+.+..++++|+ + ++++.. .++.
T Consensus 278 Y~lmASlD~a~---~~m~~~~G-~~l~~~~i~~a~~~R~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~whgf~~~~~ 353 (417)
T PF01276_consen 278 YPLMASLDVAR---AQMEEEEG-RELLEEAIELAEEFRKKINRLNDIWGFKVLGPEDVGGEGCWDLDPGENWHGFEGLAD 353 (417)
T ss_dssp HHHHHHHHHHH---HHHSHHHH-HHHHHHHHHHHHHHHHHHHHHCCT-SSEESS-SEECTCCGCB--TT-TTT--TT--T
T ss_pred HHHHHHHHHHH---HHHhhhhh-HHHHHHHHHHHHHHHHHHHhcCCCceEecCCccccCCccccccCccccchhchhccc
Confidence 21222222222 333 3444 3456677888888999883 3 333321 1110
Q ss_pred Cce-e--eEEEEEecCc-----cccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHH
Q 001989 899 GTV-A--HEFIVDLRGL-----KNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKS 956 (985)
Q Consensus 899 ~~~-~--~~~iv~~~~~-----~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~e 956 (985)
+.+ . .-+.+.++++ ..+.|+++..+.+.|.++||.+-... ...+.+-++.-.|++
T Consensus 354 ~~~~lDP~K~ti~~pG~~~~g~~~~~Gi~g~~~~~~L~~~~I~~Ek~d---~~~vL~l~t~G~t~~ 416 (417)
T PF01276_consen 354 DYYMLDPTKLTINTPGIDADGELSELGIPGYIVEKYLREHGIQVEKTD---LYNVLFLFTIGDTKE 416 (417)
T ss_dssp TSEEE-TTEEEEE-STBETTSSB-SS---HHHHHHHHHHTTEE-SEEE---SSEEEEE--TTS-HH
T ss_pred CccccCCcEEEEEccCcCcCCcccccCCCHHHHHHHHHHcCCEEEecc---CccEEEEecCCCCCC
Confidence 000 0 0133444321 02357889999999999999875433 256777777766654
No 257
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=99.69 E-value=3e-15 Score=170.97 Aligned_cols=281 Identities=17% Similarity=0.172 Sum_probs=184.0
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++.++++++.+...+..++|++ +. ..+++.+. .++|+|+++++.++.+...++..|++++.++.++++
T Consensus 62 ~~lr~~ia~~~~~~~~~i~it~G~~~~l---~~~~~~l~-----~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~ 133 (351)
T PRK14807 62 EKLREELARYCSVVPTNIFVGNGSDEII---HLIMLAFI-----NKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDY 133 (351)
T ss_pred HHHHHHHHHHhCCCcccEEEecCHHHHH---HHHHHHhc-----CCCCEEEEeCCChHHHHHHHHHcCCeEEEeecCCCC
Confidence 4678889999998776665555654 33 22333321 478899998876665555678899999999998778
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCC---CCccCCcEEEe
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS---PGYIGADVCHL 789 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~---pg~~g~Di~~~ 789 (985)
.+|+++++++++. .++++|++++| |++|.+. +.+++.++|++++.++++|+++.. ..+-.. .....--+++.
T Consensus 134 ~~d~~~l~~~~~~--~~~k~v~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~ivDe~y~~-~~~~~~~~~~~~~~~vi~~~ 209 (351)
T PRK14807 134 TYDVGSFIKVIEK--YQPKLVFLCNPNNPTGSVI-EREDIIKIIEKSRGIVVVDEAYFE-FYGNTIVDVINEFENLIVLR 209 (351)
T ss_pred CCCHHHHHHHhhc--cCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCEEEEeCcchh-hcccchHHHhhhCCCEEEEe
Confidence 8999999999972 37899999999 5799998 899999999998899999998732 111000 11122347788
Q ss_pred CCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHH
Q 001989 790 NLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 790 s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~ 869 (985)
|++|+|++| |.++|+++.++++...+.... ...+++ ...+. ++..++. ...+.
T Consensus 210 S~SK~~~~~----GlRiG~~v~~~~~~~~~~~~~--------------~~~~~~--~~~q~----~~~~~l~---~~~~~ 262 (351)
T PRK14807 210 TLSKAFGLA----GLRVGYAVANENILKYLNLVK--------------SPYNIN--SLSQV----IALKVLR---TGVLK 262 (351)
T ss_pred cchHhcccc----hhceeeeecCHHHHHHHHHcc--------------CCCCcC--HHHHH----HHHHHHh---HHHHH
Confidence 889998654 788999998877655442110 001111 11111 1222332 22345
Q ss_pred HHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC--CCCCCEEEE
Q 001989 870 EASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS--WPVPGTLMI 947 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~--~p~~~~lri 947 (985)
+..+...++++++.+.|++..++.+.++.+. + +.+.++ +..++.+.|.++||.+.... ...++++||
T Consensus 263 ~~~~~~~~~r~~l~~~l~~~~g~~~~~~~~~-~--~~i~~~--------~~~~~~~~l~~~gV~v~~~~~~~~~~~~iRi 331 (351)
T PRK14807 263 ERVNYILNERERLIKELSKIPGIKVYPSKTN-F--ILVKFK--------DADYVYQGLLERGILVRDFSKVEGLEGALRI 331 (351)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcEECcCCcc-E--EEEEcC--------CHHHHHHHHHHCCEEEEECCCCCCCCCeEEE
Confidence 5555566777788888865223322222222 2 335543 46789999999999875432 223578999
Q ss_pred eccCCCCHHHHHHHHccCChhHH
Q 001989 948 EPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 948 s~t~~~t~eeId~~~~~~~l~~~ 970 (985)
++ .+.++.++ +++.|+++
T Consensus 332 s~---~~~~~~~~--l~~~l~~~ 349 (351)
T PRK14807 332 TV---SSCEANDY--LINGLKEL 349 (351)
T ss_pred Ec---CCHHHHHH--HHHHHHHh
Confidence 98 46888998 66777664
No 258
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=99.69 E-value=2.5e-15 Score=169.93 Aligned_cols=287 Identities=17% Similarity=0.184 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHhC-CCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 634 FNNLGEWLCTITG-FDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 634 ~~e~~~~la~l~G-~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
..++++.+++.+| .+..++..+.|+... .-..++.+. .+||+|+++.+.++.+...++..|++++.+|.++
T Consensus 59 ~~~l~~a~a~~~~~~~~~~V~~gnGsde~--i~~l~~~~~-----~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~- 130 (356)
T COG0079 59 YRELRAALAEYYGVVDPENVLVGNGSDEL--IELLVRAFV-----EPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE- 130 (356)
T ss_pred HHHHHHHHHHHhCCCCcceEEEcCChHHH--HHHHHHHhh-----cCCCEEEEcCCChHHHHHHHHhcCCeEEEecccc-
Confidence 3477889999999 665666655566522 233344442 4678999998888888888999999999999977
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHc--CCEEEEEccccccccCCCC-C-CccCCcEE
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDN--GGQVYMDGANMNAQVGLTS-P-GYIGADVC 787 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~--galliVD~a~~~~~~~l~~-p-g~~g~Di~ 787 (985)
+..|++++.+.++ +++++|++++|| +||.+- +.++|.+++... +++|+||+|+..- ++-.. + -....+++
T Consensus 131 ~~~d~~~~~~~~~---~~~~lv~i~nPNNPTG~~~-~~~~l~~l~~~~~~~~~vVvDEAY~eF-~~~~~~~l~~~~~nli 205 (356)
T COG0079 131 FRLDLDAILAAIR---DKTKLVFLCNPNNPTGTLL-PREELRALLEALPEGGLVVIDEAYIEF-SPESSLELLKYPPNLI 205 (356)
T ss_pred cccCHHHHHHhhh---cCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCCcEEEEeCchhhc-CCchhhhhccCCCCEE
Confidence 9999999999998 689999999995 799997 677777777654 8899999987321 11000 0 01223366
Q ss_pred EeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
+. +||++.||..|-++|+++.++++...+... +...++++ .+..++.+.+..- +-
T Consensus 206 vl---RTfSKa~gLAGlRlGy~ia~~~~i~~l~~v--------------r~p~~v~~------~a~~aa~aal~~~--~~ 260 (356)
T COG0079 206 VL---RTFSKAFGLAGLRVGYAIANPELIAALNKV--------------RPPFNVSS------PALAAAIAALRDA--DY 260 (356)
T ss_pred EE---EecHHhhhcchhceeeccCCHHHHHHHHHh--------------cCCCCCCH------HHHHHHHHHcccH--HH
Confidence 55 556666667789999999888877655311 01113331 1122222322221 34
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC-C-CCCE
Q 001989 868 LTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW-P-VPGT 944 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~-p-~~~~ 944 (985)
+++..+++.+.+.++.+.|++ ++.-+++.. ..| +.++++ .+. ...+.+.|.++||.+..+.. + .+++
T Consensus 261 ~~~~~~~~~~~r~rl~~~l~~~~~~~v~pS~--aNF--vlv~~~-----~~~-~~~l~~~L~~~giivR~~~~~~~~~~~ 330 (356)
T COG0079 261 LEESVERIREERERLYAALKALGLFGVFPSQ--ANF--VLVRVP-----DAE-AAALAEALLKKGILVRDCSSVGLLPGY 330 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeecCCC--CcE--EEEECC-----Ccc-HHHHHHHHHHCCEEEEeCCCCCCCCCe
Confidence 556666677888899999986 322123221 122 345554 123 56899999999999876532 2 3579
Q ss_pred EEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 945 LMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 945 lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+||++ .|.||.++ ++++|++++..
T Consensus 331 lRitv---gt~een~~--ll~AL~~~~~~ 354 (356)
T COG0079 331 LRITV---GTPEENDR--LLAALREVLKG 354 (356)
T ss_pred EEEEe---CCHHHHHH--HHHHHHHHHhc
Confidence 99999 89999999 77888877654
No 259
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=99.69 E-value=1.2e-14 Score=172.07 Aligned_cols=298 Identities=13% Similarity=0.081 Sum_probs=183.7
Q ss_pred hHhhhHHHHHHHHHHHHHHhcCCC-------------CcceeeccchHHHHHHHH-HHhhhhcC----------------
Q 001989 204 EIAQGRLESLLNFQTMIADLTGLP-------------MSNASLLDEGTAAAEAMA-MCNNIQKG---------------- 253 (985)
Q Consensus 204 e~sqg~l~~i~e~q~~ia~L~g~~-------------~~~~sl~~~~ta~~ea~~-~a~~~~~~---------------- 253 (985)
+.|....+...+.-.|++++++.. .+...+++|||.+.-.++ .|+....+
T Consensus 122 ~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~ 201 (522)
T TIGR03799 122 ETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAA 201 (522)
T ss_pred ecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhh
Confidence 345555566667778888888521 234667788876444333 34332100
Q ss_pred ------CCCEEEEcCCCChhHHHHHHHhhcCCCe-EEEEeCc--------hhhhc-cC----CCEeEEEE--EcC-CCCe
Q 001989 254 ------KKKTFIIASNCHPQTIDICITRADGFDI-KVVVSDL--------KDIDY-KS----GDVCGVLV--QYP-GTEG 310 (985)
Q Consensus 254 ------~g~~Vlv~~~~H~s~~~~~~~~a~~~gi-~v~~v~~--------~~l~~-l~----~~t~~V~v--~~p-n~~G 310 (985)
++..|++++.+|.|+.+.++.+ +.|. +++.++. ++|++ +. .+++.++| +.. +.+|
T Consensus 202 ~~~~~~~~~~v~~S~~~H~S~~kaa~~l--glg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tG 279 (522)
T TIGR03799 202 LKHYGYDGLAILVSERGHYSLGKAADVL--GIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETG 279 (522)
T ss_pred hhhccCCceEEEECCCchHHHHHHHHHc--CCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCC
Confidence 2357999999999998887543 2221 5665544 34554 42 34444433 444 5799
Q ss_pred eeccHHHHHHHHHhCCcEEEEEecCccccCCCCC------Cc-ccceEEEecC-ccccccCCCCCCcEEEEEEch-hhHh
Q 001989 311 EVLDYGDFIKNAHANGVKVVMATDLLALTILKPP------GE-LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQ-EYKR 381 (985)
Q Consensus 311 ~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~------~~-~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~-~~~~ 381 (985)
.++||++|+++|+++|++++||+ .++.+.+..+ .. .+||.++.++ |++++|++ +|++++++ ++.+
T Consensus 280 aiDpl~eIa~i~~~~g~~lHVDa-A~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g-----~G~llvr~~~~~~ 353 (522)
T TIGR03799 280 NIDPLDEMADIAQELGCHFHVDA-AWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMG-----AGMVLFKDPALMS 353 (522)
T ss_pred CcCCHHHHHHHHHHcCCeEEEEc-hhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcc-----cEEEEEeCHHHHH
Confidence 99999999999999999999954 2232222211 22 3899999999 55777754 67888875 4545
Q ss_pred cCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHH
Q 001989 382 MMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGL 461 (985)
Q Consensus 382 ~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L 461 (985)
.+... ..+-.. .+...+ .+.+.+-++++. ++ .+-++ +.++|.+|++++.+++.++++|+.+.|
T Consensus 354 ~~~~~-~~Yl~~-~~~~d~--------~~~~legsR~~~----al-~lw~a--L~~lG~~G~~~ii~~~~~la~~l~~~L 416 (522)
T TIGR03799 354 AIEHH-AEYILR-KGSKDL--------GSHTLEGSRPGM----AM-LVYAG--LHIIGRKGYELLIDQSIEKAKYFADLI 416 (522)
T ss_pred HhccC-cchhcC-CCCCcc--------ccceeecCcchH----HH-HHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44321 000000 000000 011122222221 21 23333 488999999999999999999999999
Q ss_pred hcCCCeEEcCCCCcceEEEecC-C------------------------HHHHHHHHHHcCce-eeee--c----C----C
Q 001989 462 KKLGTVEVQGLPFFDTVKVKCA-D------------------------AHAIASAAYKIEMN-LRVV--D----S----N 505 (985)
Q Consensus 462 ~~~g~~~~~~~~~~~~~~~~~~-~------------------------~~~v~~~L~~~GI~-~~~~--~----~----~ 505 (985)
++..+++++.++.++.++|+.. . ...+.+++.+.|.. +... . . -
T Consensus 417 ~~~~~~el~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~ 496 (522)
T TIGR03799 417 QQQPDFELVTEPELCLLTYRYVPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTV 496 (522)
T ss_pred hhCCCeEEecCCCccEEEEEEeChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcE
Confidence 9985599998777777777631 0 23566666667763 3321 1 1 2
Q ss_pred eEEEEe-ccCCCHHHHHHHHHH
Q 001989 506 TVTASF-DETTTLEDVDKLFIV 526 (985)
Q Consensus 506 ~lris~-t~~~t~edId~li~a 526 (985)
.+|+++ .+.+|++||+.+++.
T Consensus 497 ~lR~~~~np~tt~~~i~~~l~~ 518 (522)
T TIGR03799 497 VFRVVLANPLTTHEILQDILDE 518 (522)
T ss_pred EEEEEecCCCCCHHHHHHHHHH
Confidence 489998 567889999988754
No 260
>PRK07505 hypothetical protein; Provisional
Probab=99.69 E-value=1.8e-15 Score=176.06 Aligned_cols=292 Identities=15% Similarity=0.125 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH--HHHCCcEEEEEc
Q 001989 631 QEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT--AAMCGMKIVSVG 708 (985)
Q Consensus 631 ~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~--a~~~G~~vv~v~ 708 (985)
.+...++++.+++++|. ..++.+||++|+++++..++... ..+ .+++.|+....+|++.... ....+.+++.+|
T Consensus 90 ~~~~~~l~~~la~~~~~--~~~~~~sG~~a~~~ai~~~~~~~-~~~-~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~ 165 (402)
T PRK07505 90 SQILKDLEEALSELFGA--SVLTFTSCSAAHLGILPLLASGH-LTG-GVPPHMVFDKNAHASLNILKGICADETEVETID 165 (402)
T ss_pred hHHHHHHHHHHHHHhCC--CEEEECChHHHHHHHHHHHHhcc-cCC-CCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeC
Confidence 45678999999999987 44666788888877776544211 011 1223334455788865322 122456888888
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEcccccc-ccCCCCC---CccC
Q 001989 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNA-QVGLTSP---GYIG 783 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~-~~~l~~p---g~~g 783 (985)
.+ |+++|+++++ ++++++++++|+ .+|.+. ++++|.++|+++|+++++|++|..+ .+..... ..++
T Consensus 166 ~~-----d~~~l~~~~~---~~~~~~vl~~p~~~~G~~~-~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~ 236 (402)
T PRK07505 166 HN-----DLDALEDICK---TNKTVAYVADGVYSMGGIA-PVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELD 236 (402)
T ss_pred CC-----CHHHHHHHHh---cCCCEEEEEecccccCCcC-CHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcC
Confidence 73 8999999987 566788888884 688887 7999999999999999999998421 1111110 0112
Q ss_pred ---Cc--EEEeCCcccccccCCCCCCceEEEEE-cccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHH
Q 001989 784 ---AD--VCHLNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISY 857 (985)
Q Consensus 784 ---~D--i~~~s~hK~l~~p~g~GGPg~G~i~~-~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~ 857 (985)
.| +++.++.|.|+. + +|++.+ ++++.+.+.....+.+ ..+++ ++..++++.
T Consensus 237 ~~~~d~~i~~~s~sK~~~~------~-Gg~~~~~~~~~~~~~~~~~~~~t----------~~~~~------~~~a~aa~~ 293 (402)
T PRK07505 237 YRLNERTIIAASLGKAFGA------S-GGVIMLGDAEQIELILRYAGPLA----------FSQSL------NVAALGAIL 293 (402)
T ss_pred CCCCCCeEEEEechhhhhc------c-CeEEEeCCHHHHHHHHHhCCCce----------eCCCC------CHHHHHHHH
Confidence 24 555677787742 2 266654 4444433321000000 00111 123334445
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC
Q 001989 858 TYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 858 a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~ 937 (985)
+.+..+..+.+.+..++..++.+++.+.+.. . ..+ .......+.+. ......++.++|.++||.+...
T Consensus 294 a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~--~~g---~~~~i~~~~~~-----~~~~~~~~~~~l~~~Gi~v~~~ 361 (402)
T PRK07505 294 ASAEIHLSEELDQLQQKLQNNIALFDSLIPT--E--QSG---SFLPIRLIYIG-----DEDTAIKAAKQLLDRGFYTSPV 361 (402)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHHHHh--c--CCC---CCCCEEEEEeC-----CHHHHHHHHHHHHHCCCeEeee
Confidence 5555555555544444444443333322211 1 011 11111122222 0113578999999999998765
Q ss_pred CCC-C---CCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 938 SWP-V---PGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 938 ~~p-~---~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.+| + .+.|||+|+..+|+||+|+ +++.|++++.
T Consensus 362 ~~p~~~~~~~~lRi~~~~~~t~eei~~--~~~~l~~~l~ 398 (402)
T PRK07505 362 FFPVVAKGRAGLRIMFRASHTNDEIKR--LCSLLKEILD 398 (402)
T ss_pred cCCCCCCCCceEEEecCccCCHHHHHH--HHHHHHHHHH
Confidence 544 1 2689999999999999999 7888888764
No 261
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=99.69 E-value=6.1e-15 Score=168.55 Aligned_cols=274 Identities=18% Similarity=0.189 Sum_probs=180.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 207 QGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
.|......++++.+++++|.+. ++ ++.+|+.++.+++.++ . ++||+|++++..|+++...++. .|++++.+
T Consensus 57 ~g~~~~~~~l~~~la~~~~~~~-~i-~~~~G~~~~~~~l~~~-~--~~gd~v~~~~~~~~~~~~~~~~----~g~~~~~~ 127 (360)
T TIGR00858 57 SGNSPLHEELEEELAEWKGTEA-AL-LFSSGYLANVGVISAL-V--GKGDLILSDALNHASLIDGCRL----SGARVRRY 127 (360)
T ss_pred cCCcHHHHHHHHHHHHHhCCCC-EE-EECchHHHHHHHHHHh-C--CCCCEEEEEccccHHHHHHHHh----cCCceEEe
Confidence 4444556778899999999643 34 4445555555444333 2 3889999999999999887653 46666665
Q ss_pred C---chhhhc-cC----CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCC----------Ccc
Q 001989 287 D---LKDIDY-KS----GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPP----------GEL 347 (985)
Q Consensus 287 ~---~~~l~~-l~----~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~----------~~~ 347 (985)
+ ++++++ ++ +++++|++.++ |.+|.+.|+++|.++|+++|+++++| +..+.+.+... ...
T Consensus 128 ~~~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~D-e~~~~~~~~~~~~~~~~~~~~~~~ 206 (360)
T TIGR00858 128 RHNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVD-DAHGTGVLGEDGRGTLEHFGLKPE 206 (360)
T ss_pred cCCCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEE-CcccccCcCCCCCchHHhcCCCcc
Confidence 4 456665 43 35777777776 67999999999999999999999994 33443322110 124
Q ss_pred cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHH
Q 001989 348 GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQAL 426 (985)
Q Consensus 348 GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l 426 (985)
+.||+++|. |.|+. +| |+++.++++.+.+... .+.+.. .+ -+++...
T Consensus 207 ~~~i~i~s~sK~~~~------~g-G~~~~~~~~~~~~~~~----------~~~~~~-------------~~--~~~~~~~ 254 (360)
T TIGR00858 207 PVDIQVGTLSKALGS------YG-AYVAGSQALIDYLINR----------ARTLIF-------------ST--ALPPAVA 254 (360)
T ss_pred CCcEEEEechhhhhc------cC-cEEEcCHHHHHHHHHh----------Ccccee-------------cC--CCCHHHH
Confidence 789999987 77753 23 6888887776654100 000000 00 0111223
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeee-
Q 001989 427 LANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVV- 502 (985)
Q Consensus 427 ~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~- 502 (985)
.+..+++ .++. ..+++.++..++.+++.+.|+++| +++..+ ...-+.+..+. ..++.++|.++||.+...
T Consensus 255 ~a~~~al--~~~~--~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~ 328 (360)
T TIGR00858 255 AAALAAL--ELIQ--EEPWRREKLLALIARLRAGLEALG-FTLMPS-CTPIVPVIIGDNASALALAEELQQQGIFVGAIR 328 (360)
T ss_pred HHHHHHH--HHHh--hCHHHHHHHHHHHHHHHHHHHHcC-CccCCC-CCCEEEEEeCCHHHHHHHHHHHHHCCeeEeeeC
Confidence 3333333 2222 235677889999999999999987 776532 22234455543 678999999999988531
Q ss_pred ----c--CCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 503 ----D--SNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 503 ----~--~~~lris~t~~~t~edId~li~aL~ 528 (985)
. .+.+|++++.++|++|+++++++|+
T Consensus 329 ~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 329 PPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred CCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 1 2589999999999999999999874
No 262
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=99.69 E-value=9.5e-15 Score=171.03 Aligned_cols=324 Identities=15% Similarity=0.129 Sum_probs=194.5
Q ss_pred ccccccccCCCcccccccccccccccc-CCCCchhhhhhHHHHHHHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANI-HPFAPADQAQGYQEMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVI 668 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~-~p~~p~e~~~G~~~~~~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~ai 668 (985)
..||++++.+..+...+......+.+. ++ . +...++.+.|+++++.+ ...++.+||++|++++++++
T Consensus 66 ~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~-~---------~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklA 135 (441)
T PRK05769 66 TNVGHAHPKVVKAVKEQAEKFLHYSLTDFY-Y---------EPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIA 135 (441)
T ss_pred cccCCCCHHHHHHHHHHHHhccCccCcccC-C---------HHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHH
Confidence 457888777766555443222222211 11 1 22347788888887522 24577899999999999999
Q ss_pred HHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc-------------EEEEEcCCCCCC-----C--------CHHHHH
Q 001989 669 RAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM-------------KIVSVGTDAKGN-----I--------NIEELR 721 (985)
Q Consensus 669 r~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~-------------~vv~v~~d~~g~-----i--------D~e~L~ 721 (985)
|.|. ++++||. ...+||.........|. .+..+|...... - +++.++
T Consensus 136 r~~t------gr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le 209 (441)
T PRK05769 136 RYHT------GRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIE 209 (441)
T ss_pred HHHh------CCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHH
Confidence 8762 3556765 66899987655433211 233444321100 1 134466
Q ss_pred H-HHHh--cCCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCCc------cC--Cc
Q 001989 722 K-AAEA--NRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY------IG--AD 785 (985)
Q Consensus 722 ~-~i~~--~~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~~pg~------~g--~D 785 (985)
+ .+++ ..+++++|+++.. +..|++. + +++|.++|+++|+++++|+++. + +.+.|. +| +|
T Consensus 210 ~~~~~~~~~~~~iaavi~Epv~g~~G~~~-~~~~~l~~l~~l~~~~g~lli~DEv~t-G---~gr~G~~~a~~~~gv~pD 284 (441)
T PRK05769 210 DYLFKKLVPPEEVAAIIVEPIQGEGGYVV-PPKNFFKELRKLADKYGILLIDDEVQT-G---MGRTGKMFAIEHFGVEPD 284 (441)
T ss_pred HHHHhhccCCCceEEEEECcccCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEechhh-C---CCcccceehhhccCCCCC
Confidence 6 3332 2357888887653 3567766 5 9999999999999999999874 2 333332 22 68
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
+++++ |.++ ||..+|.+++++++....+.. ..+++.|+++.++++.+.|..+..
T Consensus 285 ivt~~--K~l~-----~G~p~gav~~~~~i~~~~~~~-------------------~~~T~~g~p~~~aaa~a~L~~l~~ 338 (441)
T PRK05769 285 IITLA--KAIA-----GGLPLGAVIGRAELMFLPPGS-------------------HANTFGGNPVAAAAALATLEELEE 338 (441)
T ss_pred EEEEc--cccc-----CCcccEEEEEehhhhhcCCCC-------------------CCCCCCcCHHHHHHHHHHHHHHHH
Confidence 88653 7663 334467777787766443211 011234466677777888887754
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-c--CCeeecCCCCceeeEEEEEecCc-cccCCCCHHHHHHHHHHCCCccCCCCCCC
Q 001989 866 KGLTEASKIAILNANYMAKRLEK-H--YPILFRGVNGTVAHEFIVDLRGL-KNTAGIEPEDVAKRLMDYGFHGPTMSWPV 941 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~-g--~~l~~~~~~~~~~~~~iv~~~~~-~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~ 941 (985)
+ ..++..++.++|++.|++ . +.++........+ +.+.+..- ++........+.+.|.++|+++....
T Consensus 339 -~---~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil~~~~~--- 409 (441)
T PRK05769 339 -G---LLENAQKLGEYLRKELKELKEKYEFIGDVRGLGLM--IGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLGAG--- 409 (441)
T ss_pred -H---HHHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEE--EEEEeccCCccccHHHHHHHHHHHHhCCcEEecCC---
Confidence 3 345677788899988875 1 3332110000112 22333100 00000113467788889999875332
Q ss_pred CCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 942 PGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 942 ~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.+.+|++|+..+|++|||+ +++++++++.+
T Consensus 410 ~~~lr~~p~l~~t~~~id~--~~~~l~~~l~~ 439 (441)
T PRK05769 410 KSAIRIIPPLIITEEEADI--GLEILEEAIKE 439 (441)
T ss_pred CCEEEEeCCCCCCHHHHHH--HHHHHHHHHHH
Confidence 2689999999999999999 78888888764
No 263
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=99.69 E-value=1.1e-14 Score=170.91 Aligned_cols=300 Identities=17% Similarity=0.137 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC--
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA-- 711 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~-- 711 (985)
+.++++.+++++|.+.+ +.+++|++|+..+++++ .++|| ||++++.+.++.....+.|++++.+++++
T Consensus 80 ~~~Lreaia~~~~~~~v-v~t~ggt~A~~~~~~al--------l~pGD-Vii~~p~~~~~~~~i~~~G~~~v~v~~~~~~ 149 (460)
T PRK13238 80 YYRLEDAVKDIFGYPYT-IPTHQGRAAEQILFPVL--------IKKGD-VVPSNYHFDTTRAHIELNGATAVDLVIDEAL 149 (460)
T ss_pred HHHHHHHHHHHhCCCcE-EECCCHHHHHHHHHHHh--------CCCCC-EEccCCcccchHHHHHHcCCEEEEEeccccc
Confidence 44778899999998764 55567777775544433 14788 88888766666666788999999999853
Q ss_pred --------CCCCCHHHHHHHHHhcC-CCEEEEEEEcCC-Ccc-ccc--cCHHHHHHHHHHcCCEEEEEcccccc--cc--
Q 001989 712 --------KGNINIEELRKAAEANR-DNLSTLMVTYPS-THG-VYE--EGIDEICKIIHDNGGQVYMDGANMNA--QV-- 774 (985)
Q Consensus 712 --------~g~iD~e~L~~~i~~~~-~~t~~Vvv~~pn-~~G-~i~--~di~eI~~la~~~galliVD~a~~~~--~~-- 774 (985)
.|.+|+++|+++|+++. ++|++|++++|+ .+| .+- .++++|+++|+++|++|+.|+++... ..
T Consensus 150 ~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~ 229 (460)
T PRK13238 150 DTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIK 229 (460)
T ss_pred cccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhh
Confidence 25599999999998432 479999999984 566 332 25789999999999999999988421 00
Q ss_pred ----CC--CCCCc------cCCcEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCC
Q 001989 775 ----GL--TSPGY------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGT 841 (985)
Q Consensus 775 ----~l--~~pg~------~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~ 841 (985)
+. ....+ -..|++++|++|.+. +|.+|+++++ +++...+....+.. .+.
T Consensus 230 ~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~------~~~GG~i~~~d~~l~~~~~~~~~~~------------~g~ 291 (460)
T PRK13238 230 QREPGYKDKSIKEIAREMFSYADGLTMSAKKDAM------VNIGGLLCFRDEDLFTECRTLCILY------------EGF 291 (460)
T ss_pred hccccccCCCHHHHhhhhcccCcEEEEecccCCC------CcceeEEEcChHHHHHHhhhccccc------------CCc
Confidence 11 01111 137999999999763 4555888888 46655543221100 000
Q ss_pred CCCcchhhhHHHHHHHH-HHH-HhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccc---c
Q 001989 842 IAAAPWGSALILPISYT-YIA-MMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKN---T 915 (985)
Q Consensus 842 i~s~~~g~~~~~~~a~a-~l~-~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~---~ 915 (985)
+ ++.|.+.....|.+ .+. .+..+ ..+...+++++|.+.|++ |+++.. +.+.+ -+.+++..+.. .
T Consensus 292 ~--t~~g~~~~~~~Ala~~l~e~~~~~----~~~~~~~~~~~l~~~L~~~G~~~~~--p~Gg~--~v~~d~~~~~~~~~~ 361 (460)
T PRK13238 292 P--TYGGLAGRDMEALAVGLYEGMDED----YLAYRIGQVEYLGEGLEEAGVPIQT--PAGGH--AVFVDAGKFLPHIPA 361 (460)
T ss_pred c--cccCcHHHHHHHHHhhHHHhhChH----HHHHHHHHHHHHHHHHHHCCCCeEc--cCCce--EEEEEchhcCCCCCC
Confidence 0 11122222222222 222 22222 222334467999999987 777653 22333 35666653310 0
Q ss_pred CCCCHHHHHHHHHH-CCCccCC---CCCC-----------CCCEEEEeccC-CCCHHHHHHHHccCChhHHHHh
Q 001989 916 AGIEPEDVAKRLMD-YGFHGPT---MSWP-----------VPGTLMIEPTE-SESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 916 ~g~~~~~v~~~L~~-~Gi~~~~---~~~p-----------~~~~lris~t~-~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.+....+++.+|.+ .||.+.. ...+ ..+.+|+++.- .-|.+.+|. .++.|+++.++
T Consensus 362 ~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~--~~~~l~~~~~~ 433 (460)
T PRK13238 362 EQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDY--VAEALKAVKEN 433 (460)
T ss_pred CCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecccccCCHHHHHH--HHHHHHHHHHh
Confidence 12245778888765 5887532 1111 13789999884 358999999 66777766643
No 264
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=99.69 E-value=6.8e-15 Score=172.84 Aligned_cols=325 Identities=17% Similarity=0.179 Sum_probs=198.5
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air~ 670 (985)
..||++++.+..+...+........+.++ .+...++.+.|+++++.. ...++.+||++|++++++.+|.
T Consensus 83 ~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~----------~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~ 152 (459)
T PRK06082 83 HQLGYGHPHVIEKVKEQMAKLPFSPRRFT----------NETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARH 152 (459)
T ss_pred cccCCCCHHHHHHHHHHHHhCCCccCccC----------CHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHHH
Confidence 45788877776655444322211111111 123457888999998633 2457789999999999999887
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCC-----CCCC------HHHHHHHHHh
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAK-----GNIN------IEELRKAAEA 726 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~-----g~iD------~e~L~~~i~~ 726 (985)
| .++.+||. ...+||.........|- .+..+|.... ...| +++|++.+++
T Consensus 153 ~------tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 226 (459)
T PRK06082 153 I------TGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEK 226 (459)
T ss_pred h------cCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhc
Confidence 6 23456665 77899987554432221 1233432110 0111 3568888864
Q ss_pred cCCCEEEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCcccc
Q 001989 727 NRDNLSTLMVTYPSTHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLHKTF 795 (985)
Q Consensus 727 ~~~~t~~Vvv~~pn~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~hK~l 795 (985)
. +++++|+++-....|.+.+| +++|.++|+++|+++|+|+++. |+++.|.+ .+|++++ .|.+
T Consensus 227 ~-~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~t----G~GRtG~~fa~e~~gv~PDiv~~--gKgl 299 (459)
T PRK06082 227 E-GGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPN----GMGRTGEWFTHQAYGIEPDILCI--GKGL 299 (459)
T ss_pred C-CCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh----CCCccchhhHhHhhCCCCCEEEe--cccc
Confidence 3 57888888653223543334 8999999999999999998873 45555533 2799875 3766
Q ss_pred cccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHH
Q 001989 796 CIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKI 874 (985)
Q Consensus 796 ~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~ 874 (985)
++|. | +|.+++++++....... . .. +++.|+++.++++.+.|..+..+++ .++
T Consensus 300 ----~gG~~P-~~av~~~~~i~~~~~~~----------------~-~~-~T~~gnpl~~aaa~a~L~~l~~~~l---~~~ 353 (459)
T PRK06082 300 ----GGGLVP-IAAMITKDKYNTAAQIS----------------L-GH-YTHEKSPLGCAAALATIEVIEQEGL---LEK 353 (459)
T ss_pred ----cCCCCc-ceEEEEcHHHHhhccCC----------------C-CC-CCCCcCHHHHHHHHHHHHHHHhcCH---HHH
Confidence 3443 5 45555566654332211 0 01 2355677888888888988866654 446
Q ss_pred HHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCccccCCC---CHHHHHHHHHHCCCccCCCCCCCCCEEE
Q 001989 875 AILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGLKNTAGI---EPEDVAKRLMDYGFHGPTMSWPVPGTLM 946 (985)
Q Consensus 875 ~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~~~~~g~---~~~~v~~~L~~~Gi~~~~~~~p~~~~lr 946 (985)
..++.++|+++|++. +.++ +.+. + .+ +.+.+..-...... ....+...+.++|+.+.... .+.+|
T Consensus 354 ~~~~g~~l~~~L~~l~~~~~~i~~vrG~-G-l~--~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~---~~~i~ 426 (459)
T PRK06082 354 VKADSQFMRERLLEMKAKYPLIGDVRGI-G-LL--WGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVSQ---GNVIQ 426 (459)
T ss_pred HHHHHHHHHHHHHHHHhhCCCeeeeeec-c-ce--eEEEEccCccccCccHHHHHHHHHHHHhCCCEEEecC---CCEEE
Confidence 778888898888752 2322 1121 2 22 12222100000000 13467778889999875432 37899
Q ss_pred EeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 947 IEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 947 is~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
++|+..+|++|||+ +++++++++.++
T Consensus 427 ~~Ppl~it~~eid~--~~~~l~~~l~~~ 452 (459)
T PRK06082 427 LSPPLIITREELTQ--ALAILEEAIAKI 452 (459)
T ss_pred EeCCCccCHHHHHH--HHHHHHHHHHHH
Confidence 99999999999999 889999888765
No 265
>PRK07481 hypothetical protein; Provisional
Probab=99.69 E-value=9.8e-15 Score=171.27 Aligned_cols=340 Identities=15% Similarity=0.157 Sum_probs=201.7
Q ss_pred ccccccccCCCccccccccccccccccC-CCCchhhhhhHHHHHHHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIH-PFAPADQAQGYQEMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVI 668 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~-p~~p~e~~~G~~~~~~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~ai 668 (985)
+.||++++.+..+...+......+..+. ... +...++.+.|+++++-+ ...++.+||++|++++++++
T Consensus 54 ~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~---------~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklA 124 (449)
T PRK07481 54 VNVGHNREEVKEAIVRQLDELEYYSTFDGTTH---------PRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLA 124 (449)
T ss_pred hcCCCCCHHHHHHHHHHHHhccceecccccCC---------HHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHH
Confidence 4588888877766554432222211110 111 22346778888887421 13467899999999999999
Q ss_pred HHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCCC-----CCCCHHHH--------HH
Q 001989 669 RAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDAK-----GNINIEEL--------RK 722 (985)
Q Consensus 669 r~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~~-----g~iD~e~L--------~~ 722 (985)
|.|...+|..++.+||. ...+||....+....| ..+..++.+.. ...|++++ ++
T Consensus 125 r~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~ 204 (449)
T PRK07481 125 RQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLER 204 (449)
T ss_pred HHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHH
Confidence 98865555334566665 6789997755432111 01223332110 01244443 44
Q ss_pred HHH-hcCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEe
Q 001989 723 AAE-ANRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHL 789 (985)
Q Consensus 723 ~i~-~~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~ 789 (985)
.|. ++++++++|+++-. ...|++.+ -+++|.++|+++|+++|+|+++ .|+.+.|.+ -+|++++
T Consensus 205 ~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~----tGfGRtG~~~a~~~~gv~PDiv~~ 280 (449)
T PRK07481 205 EIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVV----TGFGRTGSWFGSRGWGVKPDIMCL 280 (449)
T ss_pred HHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehh----hCcCcCchhhHhhhcCCCCCEEEE
Confidence 443 23467899998753 34566542 2899999999999999999886 344444432 2799887
Q ss_pred CCcccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 790 NLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 790 s~hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
+ |.++ +|- | +|.+++++++.+.+..... ........+++.|+++.++++.+.|..+..+++
T Consensus 281 g--Kgl~----gG~~P-i~av~~~~~i~~~~~~~~~-----------~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l 342 (449)
T PRK07481 281 A--KGIT----SGYVP-LGATMVNARIADAFEANAD-----------FGGAIMHGYTYSGHPVACAAALATLDIVVREDL 342 (449)
T ss_pred e--eccc----CCCcC-ceEEEEcHHHHHHHhccCc-----------cccccccCCCCCCCHHHHHHHHHHHHHHHhhhH
Confidence 4 7763 331 5 5556667766554421100 000001123456788888888899998877655
Q ss_pred HHHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecC---ccccCC---CCHHHHHHHHHHCCCccCCC
Q 001989 869 TEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRG---LKNTAG---IEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~---~~~~~g---~~~~~v~~~L~~~Gi~~~~~ 937 (985)
. ++..+..++|.+.|++. ++++ +.+. + .+ +-+.+.. .+...+ .....+.+.|.++|+++...
T Consensus 343 ~---~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~-G-lm--~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~ 415 (449)
T PRK07481 343 P---ANAAKRGAYLLEGLQPLKERFELVGDVRGK-G-LM--LALDLVADKATREPIDPSKGYANAVADVARENGVLVRPS 415 (449)
T ss_pred H---HHHHHHHHHHHHHHHHHhhcCCCeEEEeec-c-eE--EEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEec
Confidence 4 45666778888887652 2322 1121 1 12 2222210 000000 01346778888999987543
Q ss_pred CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 938 SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 938 ~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+.+|++|+...|++|||+ +++++++++.+++
T Consensus 416 ----g~~i~l~Ppl~it~~eid~--~~~~l~~~l~~~~ 447 (449)
T PRK07481 416 ----GTKIILSPPLVIQREDVDR--IVDALDAGLSAVP 447 (449)
T ss_pred ----CCEEEEECCCCCCHHHHHH--HHHHHHHHHHhcc
Confidence 2579999999999999999 7899998887653
No 266
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=99.69 E-value=5.2e-15 Score=173.64 Aligned_cols=327 Identities=15% Similarity=0.139 Sum_probs=194.7
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~air 669 (985)
..||++++.+..+...+..... + ++.. ....+...++.+.++++++.. ...++.+||++|++++++.+|
T Consensus 68 ~~lGh~~p~v~~ai~~q~~~~~-~--~~~~------~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr 138 (443)
T PRK06058 68 TSVGNSAPRVVEAVREQVARFT-H--TCFM------VTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIAR 138 (443)
T ss_pred hccCCCCHHHHHHHHHHHHhcc-C--cccc------ccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHH
Confidence 4578887777665544432211 1 1110 001123457788888887533 245778999999999999888
Q ss_pred HHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC--------c-----EEEEEcCCCCCC------CC--------HHHHH
Q 001989 670 AYHKARGDHHRNVCII-PVSAHGTNPATAAMCG--------M-----KIVSVGTDAKGN------IN--------IEELR 721 (985)
Q Consensus 670 ~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G--------~-----~vv~v~~d~~g~------iD--------~e~L~ 721 (985)
.|. ++++||. ...+||....+....+ + .+..+|.....+ .+ ++.++
T Consensus 139 ~~t------gr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 212 (443)
T PRK06058 139 SYT------GRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIE 212 (443)
T ss_pred Hhh------CCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHH
Confidence 762 3456765 6678998766543222 1 122333211000 11 22233
Q ss_pred HHHHhcCCCEEEEEEEcCC-Ccccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEe
Q 001989 722 KAAEANRDNLSTLMVTYPS-THGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHL 789 (985)
Q Consensus 722 ~~i~~~~~~t~~Vvv~~pn-~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~ 789 (985)
+.+. .+++++|+++-.. ..|++.+ -+++|.++|+++|+++|+|+++. |+.+.|.+ -+|++++
T Consensus 213 ~~~~--~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~t----GfgRtG~~fa~~~~gv~PDiv~~ 286 (443)
T PRK06058 213 KQVG--ADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQT----GFARTGAWFACEHEGIVPDLITT 286 (443)
T ss_pred HhhC--CCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc----CCCcChhhhHHHhcCCCCCEEEE
Confidence 3332 2578888875422 3566641 28999999999999999998873 34444422 2699877
Q ss_pred CCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHH
Q 001989 790 NLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 790 s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~ 869 (985)
+ |.++ ||..+|.+++++++.+.+.... ..+++.|+++.++++.+.|..+..+++.
T Consensus 287 g--K~l~-----~G~Pi~av~~~~~i~~~~~~~~------------------~~~T~~gnpl~~aaa~a~L~~~~~~~l~ 341 (443)
T PRK06058 287 A--KGIA-----GGLPLSAVTGRAEIMDAPHPGG------------------LGGTYGGNPVACAAALAAIETIEEDDLV 341 (443)
T ss_pred c--cccc-----CCCccEEEEEcHHHHhhccCCC------------------CCCCCCCCHHHHHHHHHHHHHHHHcCHH
Confidence 4 7774 3444777777877765542110 1123455777788888888887665443
Q ss_pred HHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecC--ccccCCCCHHHHHHHHHHCCCccCCCCCCCC
Q 001989 870 EASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRG--LKNTAGIEPEDVAKRLMDYGFHGPTMSWPVP 942 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~--~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~ 942 (985)
++..++.++|.++|++. ++++ +.+. +. + +.+.+.. .+.........+.+.|.++|+.+.... +..
T Consensus 342 ---~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~-G~-~--~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~~~~~~-~~~ 413 (443)
T PRK06058 342 ---ARARQIEALMTDRLRALAAEDDRIGDVRGR-GA-M--IAIELVKPGTTEPDAELTKALAAAAHAAGVIVLTCG-TYG 413 (443)
T ss_pred ---HHHHHHHHHHHHHHHHHHhhCCcEEeeecc-ce-E--EEEEEecCCCCCCcHHHHHHHHHHHHHCCeEEeccC-CCC
Confidence 45667788888888752 3332 1221 22 2 2222210 000000013457777889999875432 113
Q ss_pred CEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 943 GTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 943 ~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
++||+.|+...|++|||+ +++.|+++++++
T Consensus 414 ~~lr~~Ppl~~t~~~i~~--~~~~l~~~l~~~ 443 (443)
T PRK06058 414 NVIRLLPPLVIGDELLRE--GLDVLEAALADL 443 (443)
T ss_pred CEEEEECCCccCHHHHHH--HHHHHHHHHHhC
Confidence 799999999999999999 788898887653
No 267
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=99.69 E-value=2.5e-15 Score=170.50 Aligned_cols=273 Identities=18% Similarity=0.105 Sum_probs=176.0
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---- 288 (985)
..++++.+++++| ..++.++.+||.++..++.++ .++||+|+++...|+++...+. .+...|++++.++.
T Consensus 34 ~~~l~~~~a~~~g--~~~~~~~~~gt~a~~~~~~~l---~~~gd~v~~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~ 107 (338)
T cd06502 34 TAKLEARAAELFG--KEAALFVPSGTAANQLALAAH---TQPGGSVICHETAHIYTDEAGA-PEFLSGVKLLPVPGENGK 107 (338)
T ss_pred HHHHHHHHHHHhC--CCeEEEecCchHHHHHHHHHh---cCCCCeEEEecCcceeeecCCc-HHHHcCceEEeecCCCCc
Confidence 5567789999999 345778888886665544443 2489999999999987654321 12235888877754
Q ss_pred ---hhhhc-cCC-------CEeEEEEEcCCCCee---eccHHHHHHHHHhCCcEEEEEe-cCc----cccCCCCCCcccc
Q 001989 289 ---KDIDY-KSG-------DVCGVLVQYPGTEGE---VLDYGDFIKNAHANGVKVVMAT-DLL----ALTILKPPGELGA 349 (985)
Q Consensus 289 ---~~l~~-l~~-------~t~~V~v~~pn~~G~---v~di~~I~~~a~~~galliV~a-~~~----~lg~l~~~~~~Ga 349 (985)
+++++ +.+ ++++|++.+||..|. +.|+++|+++||++|++++||. +.. +.|........++
T Consensus 108 ~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~ 187 (338)
T cd06502 108 LTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGV 187 (338)
T ss_pred CCHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcC
Confidence 45555 543 789999999966675 4578899999999999999942 110 1121001123589
Q ss_pred eEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHH
Q 001989 350 DIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLA 428 (985)
Q Consensus 350 Di~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a 428 (985)
|+++.+. |+|+.| +.++++.++++++++.... . + ..++.+. .++.+
T Consensus 188 d~~~~s~sK~~~~~------~g~~~~~~~~~~~~~~~~~----------~----------~----~~~~~~~---~~~~~ 234 (338)
T cd06502 188 DSVSFCLSKGGGAP------VGAVVVGNRDFIARARRRR----------K----------Q----AGGGMRQ---SGFLA 234 (338)
T ss_pred CEEEEeccccCCCc------cceEEECCHHHHHHHHHHH----------H----------H----hCCChhh---HHHHH
Confidence 9999887 777644 3356777877776652100 0 0 0011111 12211
Q ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC----HHHHHHHHH---HcCceeee
Q 001989 429 NMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD----AHAIASAAY---KIEMNLRV 501 (985)
Q Consensus 429 ~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~----~~~v~~~L~---~~GI~~~~ 501 (985)
.++ +..+...+..+..++..++++++.+.|+++| +.+.. +..+.+.+..+. ..++.+.|. ++|+.+..
T Consensus 235 -~a~--~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~l~~~l~~~~~~gi~~~~ 309 (338)
T cd06502 235 -AAG--LAALENDLWLRRLRHDHEMARRLAEALEELG-GLESE-VQTNIVLLDPVEANAVFVELSKEAIERRGEGVLFYA 309 (338)
T ss_pred -HHH--HHHhcCchHHHHHHHHHHHHHHHHHHHHhcC-CCccc-ccCCeEEEecCCccHHHHHHHHHHHHhhhCCEEEEe
Confidence 122 2333344667777888999999999999987 54432 333445555543 334444443 57998876
Q ss_pred ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
...+.+|++++.++|++|++++++++..
T Consensus 310 ~~~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 310 WGEGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred cCCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 5458999999999999999999999863
No 268
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=99.69 E-value=2.2e-15 Score=173.07 Aligned_cols=284 Identities=14% Similarity=0.143 Sum_probs=183.9
Q ss_pred HHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGN 714 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~ 714 (985)
.++++.+++++|.+...+..++|++..+ ..+++.+. .++++|+++++.|..+...++..|++++.+|. .++.
T Consensus 70 ~~lr~~ia~~~~~~~~~i~~t~G~~~~l--~~~~~~l~-----~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~-~~~~ 141 (367)
T PRK02731 70 FELKAALAEKFGVDPERIILGNGSDEIL--ELLARAYL-----GPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPA-KDYG 141 (367)
T ss_pred HHHHHHHHHHhCcCHHHEEEcCCHHHHH--HHHHHHhc-----CCCCEEEEecCCHHHHHHHHHHcCCeEEEecc-cCCC
Confidence 3688899999998776666666655221 22223221 36789999887776666667789999999998 4577
Q ss_pred CCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHc--CCEEEEEcccccccc-CCCCC----CccCC-c
Q 001989 715 INIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDN--GGQVYMDGANMNAQV-GLTSP----GYIGA-D 785 (985)
Q Consensus 715 iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~--galliVD~a~~~~~~-~l~~p----g~~g~-D 785 (985)
+|+++++++++ +++++|++++|+ ++|.+. +.++|.++++.. |+++++|+++..... ....+ ..... .
T Consensus 142 ~~~~~l~~~~~---~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~ 217 (367)
T PRK02731 142 HDLDAMLAAVT---PRTRLVFIANPNNPTGTYL-PAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNV 217 (367)
T ss_pred CCHHHHHHHhC---CCCcEEEEeCCCCCCCcCC-CHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCE
Confidence 99999999997 788999999994 799998 899999999875 899999998732110 00000 01112 3
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
+++.|+.|.|+. .|.++|++++++++.+.+.... ...+++ .....++..++. ..
T Consensus 218 i~~~S~SK~~g~----~G~RiG~l~~~~~~~~~l~~~~--------------~~~~~~------~~~~~~a~~~l~--~~ 271 (367)
T PRK02731 218 VVTRTFSKAYGL----AGLRVGYGIAPPEIIDALNRVR--------------QPFNVN------SLALAAAVAALD--DD 271 (367)
T ss_pred EEEeeehHhhcC----cccceeeeeCCHHHHHHHHHcc--------------CCCCCC------HHHHHHHHHHhC--CH
Confidence 556677787743 4678999999877654432110 001111 111122223332 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-CCCCC
Q 001989 866 KGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-WPVPG 943 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~p~~~ 943 (985)
+.+++..+...++.+++.+.|++ ++.+. ++.+. + +.+.++ .+.+..++++.|.++||.+.... +..++
T Consensus 272 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~g~-~--~~i~~~-----~~~~~~~~~~~L~~~gI~v~~~~~~~~~~ 341 (367)
T PRK02731 272 AFVEKSRALNAEGMAWLTEFLAELGLEYI--PSVGN-F--ILVDFD-----DGKDAAEAYQALLKRGVIVRPVAGYGLPN 341 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccC--CCCce-E--EEEECC-----CCCCHHHHHHHHHHCCEEEEeCCCCCCCC
Confidence 33445555566777888888876 44332 22222 2 345543 13578899999999999876432 32357
Q ss_pred EEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 944 TLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 944 ~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
++|+++ .+.+|+++ ++++|++++
T Consensus 342 ~iRis~---~~~~e~~~--l~~aL~~~~ 364 (367)
T PRK02731 342 ALRITI---GTEEENRR--FLAALKEFL 364 (367)
T ss_pred eEEEec---CCHHHHHH--HHHHHHHHH
Confidence 999998 48999999 778888765
No 269
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=99.69 E-value=6.4e-15 Score=169.94 Aligned_cols=281 Identities=15% Similarity=0.145 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc--------
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM-------- 702 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~-------- 702 (985)
+...++.+++++.++.+ ..++.+||++|++++++.++.+ .++++||+ ...+||.........+.
T Consensus 71 ~~~~~la~~l~~~~~~~-~~~~~~sG~~a~~~A~~~a~~~------~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~ 143 (377)
T PRK02936 71 SLQEEVASLLAENSAGD-LVFFCNSGAEANEAALKLARKH------TGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFG 143 (377)
T ss_pred HHHHHHHHHHHhcCCCC-EEEEeCCcHHHHHHHHHHHHHh------cCCCeEEEECCCcCCCcHHhhhccCCccccccCC
Confidence 34557777888777654 3466789999999888877654 23456666 46789877655443332
Q ss_pred ----EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc---CHHHHHHHHHHcCCEEEEEcccccccc
Q 001989 703 ----KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQV 774 (985)
Q Consensus 703 ----~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~ 774 (985)
++..+|. .|++++++.+. +++++|+++.+. ..|.+.+ ++++|.++|+++|+++++|++|. +++
T Consensus 144 ~~~~~~~~~~~-----~d~~~l~~~~~---~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~-g~g 214 (377)
T PRK02936 144 PLLPGFTHVPF-----NDIKALKEVMN---EEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQT-GIG 214 (377)
T ss_pred CCCCCceEeCC-----CCHHHHHHhcc---CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCC
Confidence 2233443 28999999997 789999998763 4565531 39999999999999999999983 332
Q ss_pred CCCCC---Ccc--CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 775 GLTSP---GYI--GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 775 ~l~~p---g~~--g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
-...+ ..+ ..|++++ .|+|+ +|..+|++++++++.+.+.... ... ++.++
T Consensus 215 ~~g~~~~~~~~~~~~di~t~--sK~l~-----~G~~ig~v~~~~~~~~~~~~~~--------------~~~----t~~~~ 269 (377)
T PRK02936 215 RTGTLFAYEQFGLDPDIVTV--AKGLG-----NGIPVGAMIGKKELGTAFGPGS--------------HGS----TFGGN 269 (377)
T ss_pred cCchhhHHHhhCCCCcEEEE--ccccc-----CCCccEEEEEcHHHHhhccCCC--------------CCC----CCCCC
Confidence 11111 112 3577654 58774 3445778888877766543210 000 11224
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHH
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~ 926 (985)
+..++++.+.|..+..+ +..++..++.++++++|++. +........... .+.+.+. .+...+.+.
T Consensus 270 ~~~~aaa~a~l~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~--~~~i~~~-------~~~~~~~~~ 337 (377)
T PRK02936 270 PLAMAAAKEVLQVIKQP---SFLEEVQEKGEYFLQKLQEELEHLECVKNIRGKGL--MIGIECT-------EEVAPVIEQ 337 (377)
T ss_pred HHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhhCCcEEeEeecce--EEEEEec-------chHHHHHHH
Confidence 44455556666655332 23345667778888888652 332211000111 2334443 136788999
Q ss_pred HHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 927 LMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 927 L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
|.++|+.+.... .+.+|++|+..++++||++ +++.|+++
T Consensus 338 l~~~gv~v~~~g---~~~lRi~p~~~~~~~~i~~--~i~~l~~~ 376 (377)
T PRK02936 338 LREEGLLVLSAG---PNVIRLLPPLVVTKEELDQ--AVYLLKKV 376 (377)
T ss_pred HHHCCeEEecCC---CCEEEEECCcccCHHHHHH--HHHHHHHh
Confidence 999999874322 3789999999999999999 66766654
No 270
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=99.68 E-value=8.7e-15 Score=170.17 Aligned_cols=339 Identities=15% Similarity=0.149 Sum_probs=203.4
Q ss_pred HHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhC----
Q 001989 571 HELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITG---- 646 (985)
Q Consensus 571 ~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G---- 646 (985)
.+..+|++..++-. ...||++++.+..+...+........+. .+. .+...++.+++++++.
T Consensus 32 ~dG~~ylD~~~g~~------~~~lGh~~p~v~~ai~~ql~~~~~~~~~-~~~--------~~~~~~lae~l~~~~~~~~~ 96 (412)
T TIGR02407 32 EDGKEYIDFFAGAG------ALNYGHNNPKLKQALIDYLADDGIIHSL-DMA--------TEAKREFLETFNEIILKPRG 96 (412)
T ss_pred CCCCEEEEcccchh------hccCCCCCHHHHHHHHHHHhhccceecc-ccC--------cHHHHHHHHHHHHhccCccC
Confidence 44455666544432 3458998888876655543221111111 110 1223467777777642
Q ss_pred CCc-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCCC
Q 001989 647 FDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDAK 712 (985)
Q Consensus 647 ~~~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~~ 712 (985)
.+. ..|+.+||++|++++++.+|.| +++++||. ...+||....+....| ..+..+|.+..
T Consensus 97 ~~~~~~f~~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~ 170 (412)
T TIGR02407 97 LDYKVQFPGPTGTNAVESALKLARKV------TGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGY 170 (412)
T ss_pred CCceEEEeCCCchHHHHHHHHHHhhh------cCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCc
Confidence 222 2344589999999999999876 23556765 6789998765543211 13444554211
Q ss_pred C---CCCHHHHHHHHHhcC---CCEEEEEEEcC-CCccccc---cCHHHHHHHHHHcCCEEEEEccccccccCCCCCC--
Q 001989 713 G---NINIEELRKAAEANR---DNLSTLMVTYP-STHGVYE---EGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG-- 780 (985)
Q Consensus 713 g---~iD~e~L~~~i~~~~---~~t~~Vvv~~p-n~~G~i~---~di~eI~~la~~~galliVD~a~~~~~~~l~~pg-- 780 (985)
. ..+++.+++.++++. +++++|+++-. +..|++. ..+++|.++|+++|+++|+|+++. |+.+.|
T Consensus 171 ~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t----G~GRtG~~ 246 (412)
T TIGR02407 171 LGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQA----GCGRTGTF 246 (412)
T ss_pred cccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh----CCCccchh
Confidence 1 135788898887542 45788887542 4567643 258999999999999999999873 333332
Q ss_pred ------ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHH
Q 001989 781 ------YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 781 ------~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
...+|+++++ |+++ .||-.+|++++++++ ..+.... ..+++.|+++.++
T Consensus 247 ~a~~~~~v~PDi~~~~--K~lg----~~G~pigav~~~~~~-~~~~~~~------------------~~~T~~gnpl~~a 301 (412)
T TIGR02407 247 FSFEPAGIEPDIVCLS--KSIS----GYGLPLALTLIKPEL-DVWKPGE------------------HNGTFRGNNLAFV 301 (412)
T ss_pred HHhcccCCCCCEEEec--hhcc----CCccceeEEEEchhh-hccCCCc------------------cCCCCCccHHHHH
Confidence 2347988764 8873 324458888888765 3222110 0112344666666
Q ss_pred HHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHhhc---cCC-eeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH
Q 001989 855 ISYTYIAM-MGSKGLTEASKIAILNANYMAKRLEK---HYP-ILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 855 ~a~a~l~~-lg~eGl~~~~~~~~~~a~~l~~~L~~---g~~-l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
++.+.+.. +..+.+. ++..+..++++++|+. .+. +.........+ +.+.++. ......+.+.|.+
T Consensus 302 aa~a~l~~~i~~~~l~---~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~--~~l~l~~-----~~~~~~~~~~~~~ 371 (412)
T TIGR02407 302 TATAALEYYWSDDAFE---KAVQRKSEIIQERLDRIVAEYPELIKQVRGRGLM--QGIECGD-----GDLAGKIAKAAFE 371 (412)
T ss_pred HHHHHHHHHhcccHHH---HHHHHHHHHHHHHHHHHHhhCCCceEeeecceeE--EEEEecC-----hHHHHHHHHHHHH
Confidence 66777874 6554443 4555667777777764 122 21111111111 2344431 2235678899999
Q ss_pred CCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 930 YGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 930 ~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
+|+.+.... +..+.||++|+..+|++|+|+ ++++++++++
T Consensus 372 ~Gv~v~~~~-~~~~~lr~~p~l~~t~~~i~~--~~~~l~~~l~ 411 (412)
T TIGR02407 372 NGLIIETSG-PNDEVIKLLPPLTIDEETLQQ--GLDILEQAVE 411 (412)
T ss_pred CCCEEeccC-CCCCEEEEECCCCCCHHHHHH--HHHHHHHHHh
Confidence 999885432 124789999999999999999 7788888774
No 271
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=99.68 E-value=8.2e-15 Score=169.14 Aligned_cols=214 Identities=23% Similarity=0.251 Sum_probs=156.5
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchh---
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKD--- 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~--- 290 (985)
.++++.+|+++|.+. +.++.+|++++.+++.++ . ++||+|+++...|+.....+...+...|++++++|.++
T Consensus 62 ~~le~~lA~l~g~~~--av~~~sG~~Ai~~~l~al-~--~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~d~e~ 136 (391)
T TIGR01328 62 SNLEGRIAFLEGTEA--AVATSSGMGAIAATLLTI-L--KAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMAIPEE 136 (391)
T ss_pred HHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHH-h--CCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECCCCHHH
Confidence 457899999999886 667888888777666554 2 38999999999999888887776777899999998754
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|.++|+|+++.|. |.+++| |+
T Consensus 137 l~~~i~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD-~a~a~~~~~~~~~~g~Divv~S~sK~lgg~---g~ 212 (391)
T TIGR01328 137 VKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVD-NTFATPMLTNPVALGVDVVVHSATKYIGGH---GD 212 (391)
T ss_pred HHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEE-CCCchhccCCchhcCCCEEEccccccccCC---CC
Confidence 445 7889999999998 78999999999999999999999994 45566666667788999999998 777643 33
Q ss_pred CcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHH
Q 001989 368 PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIA 447 (985)
Q Consensus 368 P~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~ 447 (985)
+.+|+++.++++++++- ..+ ++.... + ..++. .|+ +...+.+-+..+.
T Consensus 213 ~~gG~v~~~~~li~~l~--~~~----------------------~~~~~g-~--~l~~~---~a~--l~l~~L~tl~~r~ 260 (391)
T TIGR01328 213 VVAGLICGKAELLQQIR--MVG----------------------IKDMTG-S--VISPF---DAW--LILRGLKTLNIRM 260 (391)
T ss_pred ceEEEEEcCHHHHHHHH--HHH----------------------HHhCCC-C--CCCcH---HHH--HHHhCcCcHHHHH
Confidence 44688888887765541 000 000000 0 00111 122 2333445667777
Q ss_pred HHHHHHHHHHHHHHhcCCCeE
Q 001989 448 QRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 448 ~~~~~~a~~l~~~L~~~g~~~ 468 (985)
++..+++.++.+.|++..+++
T Consensus 261 ~~~~~na~~la~~L~~~p~v~ 281 (391)
T TIGR01328 261 KRHSENAMKVAEYLKSHPAVE 281 (391)
T ss_pred HHHHHHHHHHHHHHHhCCCcc
Confidence 888899999999999885454
No 272
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=99.68 E-value=6.8e-15 Score=171.76 Aligned_cols=298 Identities=16% Similarity=0.153 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEc-CCCCcccHHHHHHCC-------
Q 001989 631 QEMFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIP-VSAHGTNPATAAMCG------- 701 (985)
Q Consensus 631 ~~~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~-~~~Hg~~~~~a~~~G------- 701 (985)
.+...++++.+++++|.+. ..++.+||++|+++++.+++.+ .++++|++. ..+||.........+
T Consensus 78 ~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~~al~~~~~~------~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 151 (413)
T cd00610 78 NEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAY------TGRKKIISFEGAYHGRTLGALSLTGSKKYRGG 151 (413)
T ss_pred CHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHH------cCCCeEEEECCCcCCccHHHHHhcCCcccccc
Confidence 3556789999999998433 3466789999998888877654 246777774 468887765544322
Q ss_pred -----cEEEEEcCCCC------CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccC----HHHHHHHHHHcCCEEEE
Q 001989 702 -----MKIVSVGTDAK------GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG----IDEICKIIHDNGGQVYM 765 (985)
Q Consensus 702 -----~~vv~v~~d~~------g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d----i~eI~~la~~~galliV 765 (985)
.+++.+|.+.. ...|+++|+++++++++++++|+++..+ .+|.+. + +++|.++|+++|+++++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~-~~~~~l~~l~~l~~~~~~~li~ 230 (413)
T cd00610 152 FGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIV-PPPGYLKALRELCRKHGILLIA 230 (413)
T ss_pred CCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCcc-CCHHHHHHHHHHHHHcCCEEEE
Confidence 24667776532 2348999999998543467767665433 468765 5 99999999999999999
Q ss_pred EccccccccCCCCC---C--ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCC
Q 001989 766 DGANMNAQVGLTSP---G--YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG 840 (985)
Q Consensus 766 D~a~~~~~~~l~~p---g--~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~ 840 (985)
|+++. +++..... . ...+|++++| |+|+ +|.++|++++++++.+.+....+ ...+
T Consensus 231 Dev~~-g~g~~g~~~~~~~~~~~~d~~t~s--K~l~-----~g~~~g~~~~~~~~~~~~~~~~~------------~~~~ 290 (413)
T cd00610 231 DEVQT-GFGRTGKMFAFEHFGVEPDIVTLG--KGLG-----GGLPLGAVLGREEIMDAFPAGPG------------LHGG 290 (413)
T ss_pred ecccc-CCCcCcchhhHhhcCCCCCeEEEc--cccc-----CccccEEEEEcHHHHHhhccCCC------------CCCC
Confidence 99874 22111110 1 1235776554 8885 23568888888877765411100 0001
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCeeecC-CCCceeeEEEEEecCccc--
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPILFRG-VNGTVAHEFIVDLRGLKN-- 914 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~~~~-~~~~~~~~~iv~~~~~~~-- 914 (985)
. +.+++..++++.+.++.+..+ +..++..+++++++++|++. .++.... ..+. .+.+.+..-..
T Consensus 291 t----~~~~~~~~~a~~a~l~~l~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~ 360 (413)
T cd00610 291 T----FGGNPLACAAALAVLEVLEEE---GLLENAAELGEYLRERLRELAEKHPLVGDVRGRGL---MIGIELVKDRATK 360 (413)
T ss_pred C----CCcCHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhhCCcEEEeecCce---EEEEEEecCCCcC
Confidence 1 112334445556667766543 34456777888888888752 1222111 1122 12333321000
Q ss_pred -cCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 915 -TAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 915 -~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
........+.+.|.++|+.+.... .+.+|++++..+|++||++ +++.|+++
T Consensus 361 ~~~~~~~~~~~~~l~~~gv~v~~~~---~~~lR~~~~~~~t~~~i~~--~~~~l~~~ 412 (413)
T cd00610 361 PPDKELAAKIIKAALERGLLLRPSG---GNVIRLLPPLIITEEEIDE--GLDALDEA 412 (413)
T ss_pred CcchHHHHHHHHHHHHCCeEEeecC---CCEEEEECCCcCCHHHHHH--HHHHHHHh
Confidence 000245779999999999885443 3789999999999999999 66766654
No 273
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=99.68 E-value=1.2e-14 Score=169.71 Aligned_cols=342 Identities=15% Similarity=0.126 Sum_probs=205.0
Q ss_pred HHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhC----
Q 001989 571 HELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITG---- 646 (985)
Q Consensus 571 ~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G---- 646 (985)
.+..+|++..++-. ...||++++.+..+...+.......... .+. .+...++.+.+++++.
T Consensus 36 ~dG~~ylD~~~g~~------~~~lGh~~p~v~~ai~~ql~~~~~~~~~-~~~--------~~~~~~lae~l~~~~~~~~~ 100 (425)
T PRK09264 36 EDGKEYIDFFAGAG------ALNYGHNNPVLKQALIDYLQRDGITHGL-DMH--------TTAKREFLETFEETILKPRG 100 (425)
T ss_pred CCCCEeeecccchh------hccCCCCCHHHHHHHHHHHHhccccccc-ccC--------cHHHHHHHHHHHHhhcCCcC
Confidence 45566777655432 3468999888877655544221111111 111 0223466777777652
Q ss_pred CCc-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHC---------C---cEEEEEcCCCC
Q 001989 647 FDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMC---------G---MKIVSVGTDAK 712 (985)
Q Consensus 647 ~~~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~---------G---~~vv~v~~d~~ 712 (985)
.+. ..|..+||++|++++++.+|.| +++.+||. ..++||....+.... + ..+..+|.+..
T Consensus 101 ~~~~~~f~~~sGseA~e~AlklAr~~------tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~ 174 (425)
T PRK09264 101 LDYKVQFTGPTGTNAVEAALKLARKV------TGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGY 174 (425)
T ss_pred CCceEEEeCCCHHHHHHHHHHHHHHh------cCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCc
Confidence 322 2344589999999999999876 23456665 678999876554321 1 13455665321
Q ss_pred C---CCCHHHHHHHHHhcC---CCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCc-
Q 001989 713 G---NINIEELRKAAEANR---DNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY- 781 (985)
Q Consensus 713 g---~iD~e~L~~~i~~~~---~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~- 781 (985)
. ..|++++++.+++++ +++++|+++-. +..|++.+ .+++|.++|+++|+++|+|++|. ++++.|.
T Consensus 175 ~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t----G~GrtG~~ 250 (425)
T PRK09264 175 FGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQA----GCGRTGTF 250 (425)
T ss_pred cccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhh----CCccccHH
Confidence 1 137888999987532 35788887653 34565432 59999999999999999999873 2333331
Q ss_pred -------cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHH
Q 001989 782 -------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 782 -------~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
..+|+++++ |.++ .+|-.+|++++++++..+.+.. ..+++.|++..++
T Consensus 251 ~~~~~~~v~PDi~t~~--K~l~----~~G~pigav~~~~~i~~~~~~~-------------------~~~T~~gnp~~~a 305 (425)
T PRK09264 251 FSFERAGITPDIVTLS--KSIS----GYGLPMALVLIKPELDVWKPGE-------------------HNGTFRGNNLAFV 305 (425)
T ss_pred HHHhhcCCCCCEEEec--cccC----CCccceEEEEEchhhhccCCCc-------------------cCCCCCCCHHHHH
Confidence 347888764 8773 3243468888887653221110 0112334455555
Q ss_pred HHHHHH-HHhcHHHHHHHHHHHHHHHHHHHHHhhc---cCC-eeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH
Q 001989 855 ISYTYI-AMMGSKGLTEASKIAILNANYMAKRLEK---HYP-ILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 855 ~a~a~l-~~lg~eGl~~~~~~~~~~a~~l~~~L~~---g~~-l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
++.+.+ ..+..+.+ .++..++.++++++|++ .++ +.........+ +.+.+.. ......+.+.|.+
T Consensus 306 aa~a~l~~~~~~~~l---~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~--~~i~l~~-----~~~~~~l~~~~~~ 375 (425)
T PRK09264 306 TATAALEEYWSDDAF---EKEVKAKGELVRERLEEIAAKYPGLGAEVRGRGMM--QGIDFGD-----GELAGKIAAEAFE 375 (425)
T ss_pred HHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHHHHHHhCCCceecceecccE--EEEEecC-----hHHHHHHHHHHHH
Confidence 565666 44443333 44566777888877764 222 11111101112 2344431 1235678899999
Q ss_pred CCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 930 YGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 930 ~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+|+.+..... ..+.||++|+..+|++|||+ +++.|++++..+.
T Consensus 376 ~Gv~~~~~~~-~~~~lr~~p~l~~t~~ei~~--~~~~l~~~l~~~~ 418 (425)
T PRK09264 376 NGLIIETSGP-EDEVVKLLPPLTIDEEELEE--GLDILEEAVAEVL 418 (425)
T ss_pred CCCEEeccCC-CCCEEEEeCCCCCCHHHHHH--HHHHHHHHHHHHH
Confidence 9998754321 13799999999999999999 8899999887653
No 274
>PRK07483 hypothetical protein; Provisional
Probab=99.68 E-value=1e-14 Score=170.66 Aligned_cols=345 Identities=15% Similarity=0.141 Sum_probs=207.0
Q ss_pred cccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHH
Q 001989 591 MIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air 669 (985)
...||++++.+..+...+.... .+.+...+. .+...++.+.|++++.-. ...++.+||++|++++++.+|
T Consensus 41 ~~~lGh~~p~v~~av~~ql~~~-~~~~~~~~~--------~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr 111 (443)
T PRK07483 41 VSCLGHSHPRVIAAIHAQIDRL-AYAHTSFFT--------TEPAEALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLAR 111 (443)
T ss_pred hhccCCCCHHHHHHHHHHHHhc-cCccccccC--------CHHHHHHHHHHHHhCCCCCCEEEEcCCcHHHHHHHHHHHH
Confidence 3468888887776655443221 111100011 122346778888887422 235678999999999999999
Q ss_pred HHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCCCC-C------------CHHHHHHH
Q 001989 670 AYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAKGN-I------------NIEELRKA 723 (985)
Q Consensus 670 ~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~g~-i------------D~e~L~~~ 723 (985)
.|...+|.+++.+||. ...+||....+....|- .+..++.....+ . .+++++++
T Consensus 112 ~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 191 (443)
T PRK07483 112 QYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAK 191 (443)
T ss_pred HHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHH
Confidence 8865555334567776 77899987655432211 123333211111 0 13567776
Q ss_pred HHh-cCCCEEEEEEEcCC--Ccccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEe
Q 001989 724 AEA-NRDNLSTLMVTYPS--THGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHL 789 (985)
Q Consensus 724 i~~-~~~~t~~Vvv~~pn--~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~ 789 (985)
+.+ +.+++++|+++-.- .-|++.+ -+++|.++|+++|+++|+|+++ .|+.++|.+ .+|++++
T Consensus 192 ~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~----tGfGRtG~~~a~~~~gv~PDiv~~ 267 (443)
T PRK07483 192 ILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVM----CGMGRTGTLFACEEDGVAPDLVTI 267 (443)
T ss_pred HHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecce----eCcccCcHHHHHhhcCCCCCeeee
Confidence 642 33678899887532 2366642 2899999999999999999886 345555533 2799877
Q ss_pred CCcccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 790 NLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 790 s~hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
+ |.++ +|- | +|.+++++++.+.+.... + . ....+++.|+++.++++.+.|..+.++++
T Consensus 268 g--K~l~----gG~~P-i~av~~~~~i~~~~~~~~-~------------~-~~h~~T~~gnpl~~aaa~a~l~~i~~~~l 326 (443)
T PRK07483 268 A--KGLG----AGYQP-IGAVLASDRIYDAIADGS-G------------F-FQHGHTYLGHATACAAALAVQRVIAEDGL 326 (443)
T ss_pred h--hhhc----cCccc-cEEEEEcHHHHHHHhcCC-C------------c-cccCCCCCCCHHHHHHHHHHHHHHHhcCH
Confidence 4 7763 332 5 566666777655442110 0 0 01123456788888888899988877655
Q ss_pred HHHHHHHHHHHHHHHHHhhc---cCCee--ecCCCCceeeEEEEEecC-cccc--CC-CCHHHHHHHHHHCCCccCCCCC
Q 001989 869 TEASKIAILNANYMAKRLEK---HYPIL--FRGVNGTVAHEFIVDLRG-LKNT--AG-IEPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~---g~~l~--~~~~~~~~~~~~iv~~~~-~~~~--~g-~~~~~v~~~L~~~Gi~~~~~~~ 939 (985)
. ++..+..++|+++|++ .++++ +.+. + .+..+-+..+. .+.. .. .....+.+.+.++|+++.....
T Consensus 327 ~---~~~~~~g~~l~~~L~~l~~~~~~i~~vRG~-G-lm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~ 401 (443)
T PRK07483 327 L---ANVRARGEQLRARLRERLGQHPHVGDIRGR-G-LFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGG 401 (443)
T ss_pred H---HHHHHHHHHHHHHHHHHHhcCCCeeeEeec-c-cEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCc
Confidence 4 4566777888888864 22321 1121 1 22112121110 0000 00 0135688888999998743211
Q ss_pred ----CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 940 ----PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 940 ----p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+.++.+|+.|+...|++|||+ ++++|++++.++.+
T Consensus 402 ~~~~~~~~~l~~~PpL~it~~eid~--~~~~l~~~l~~~~~ 440 (443)
T PRK07483 402 TIDGVRGDHVLLAPPFIITAAQIDE--IVERLGDAIDAALA 440 (443)
T ss_pred cccCCCCCEEEEECCCCCCHHHHHH--HHHHHHHHHHHHHh
Confidence 123799999999999999999 88999999987654
No 275
>PRK07480 putative aminotransferase; Validated
Probab=99.68 E-value=6e-15 Score=173.11 Aligned_cols=340 Identities=18% Similarity=0.201 Sum_probs=200.2
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~ 670 (985)
..+|++++.+..+...+........+.+-+ ..+...++.+.|+++++.+. ..++.+||++|++++++++|.
T Consensus 62 ~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~--------~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~ 133 (456)
T PRK07480 62 VNVGYGRKELADAAARQMRELPYYNTFFKT--------THPPAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRH 133 (456)
T ss_pred hcCCCCCHHHHHHHHHHHHhcCCccccccc--------CCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHH
Confidence 457888777766655443222211111101 11234577888888875322 346789999999999999998
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCCC----CCC--------HHHHHHHHH
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAKG----NIN--------IEELRKAAE 725 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~g----~iD--------~e~L~~~i~ 725 (985)
|...+|...+.+||. ..++||.........|. .+..++..... ..+ +++|++.+.
T Consensus 134 ~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~ 213 (456)
T PRK07480 134 YWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKIL 213 (456)
T ss_pred HHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHH
Confidence 865555334566775 56799976443322111 12223321100 011 366665553
Q ss_pred -hcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCCc
Q 001989 726 -ANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLH 792 (985)
Q Consensus 726 -~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~h 792 (985)
...+++++|+++-. ...|++.+| +++|.++|+++|+++|+|+++ .|+.+.|.+ -+|+++++
T Consensus 214 ~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~----tGfGRtG~~~a~~~~gv~PDiv~~g-- 287 (456)
T PRK07480 214 ELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVI----CGFGRTGEWFGSQHFGIKPDLMTIA-- 287 (456)
T ss_pred hcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechh----hCCCcCcchhhhhhcCCCCCeeeee--
Confidence 23357888888753 345666522 899999999999999999886 344445433 26888764
Q ss_pred ccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHH
Q 001989 793 KTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEA 871 (985)
Q Consensus 793 K~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~ 871 (985)
|.++ +|- | +|.+++++++.+.+.... + .....+++.|+++.++++.+.|..+.++++.+
T Consensus 288 K~l~----gG~~P-i~av~~~~~i~~~~~~~~-~-------------~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~- 347 (456)
T PRK07480 288 KGLT----SGYIP-MGAVGVGDRVAEVLIEEG-G-------------EFNHGFTYSGHPVAAAVALANLRILRDEGIVE- 347 (456)
T ss_pred hhhc----cCCcc-ceEEEEcHHHHHHHhcCC-C-------------CcccCCCCCcCHHHHHHHHHHHHHHHhCCHHH-
Confidence 7763 231 5 455555766655441100 0 00112345668888888999999887766543
Q ss_pred HHHH-HHHHHHHHHHhhcc--CCee--ecCCCCceeeEEEEEec-CccccC-C--CCHHHHHHHHHHCCCccCCCCCCCC
Q 001989 872 SKIA-ILNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLR-GLKNTA-G--IEPEDVAKRLMDYGFHGPTMSWPVP 942 (985)
Q Consensus 872 ~~~~-~~~a~~l~~~L~~g--~~l~--~~~~~~~~~~~~iv~~~-~~~~~~-g--~~~~~v~~~L~~~Gi~~~~~~~p~~ 942 (985)
+. .++.++|.++|++. ..++ +.+. + .+..+.+.-+ ..+... . .....+.+++.++|+++... .
T Consensus 348 --~~~~~~g~~l~~~l~~l~~~~~i~~vrG~-G-lm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----~ 419 (456)
T PRK07480 348 --RVRDDTGPYLQKRLRELADHPLVGEVRGV-G-LVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRAV----G 419 (456)
T ss_pred --HHHHHHHHHHHHHHHHhhcCCCeeeEEee-c-ceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEEeec----C
Confidence 44 35667777777651 2221 1121 1 2212222111 000000 0 01246777888999988532 3
Q ss_pred CEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 943 GTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 943 ~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+.+|++|+...|++|||+ ++++|++++.+++
T Consensus 420 ~~l~~~Ppl~it~~eid~--~~~~l~~al~~~~ 450 (456)
T PRK07480 420 DRMIISPPLVITHAEIDE--LVEKARKALDATA 450 (456)
T ss_pred CEEEEECCCCCCHHHHHH--HHHHHHHHHHHHH
Confidence 689999999999999999 8899999988764
No 276
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=99.68 E-value=1.3e-14 Score=168.80 Aligned_cols=302 Identities=16% Similarity=0.172 Sum_probs=181.7
Q ss_pred CcHHHHHHHHhCCccccccCCChhhHh-hhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEE
Q 001989 180 VPPVILRNIMENPAWYTQYTPYQAEIA-QGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTF 258 (985)
Q Consensus 180 ~p~~v~~~i~~~~~~~t~~~pyq~e~s-qg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~V 258 (985)
+|+.+.+++.+ ++..|++...... ..+-..+.++++.+|+|+|++. +.+++++++++..++.++ .+||+|
T Consensus 93 l~~~vieAv~~---~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~gae~--alvv~sg~aAi~l~l~~l----~~GdeV 163 (454)
T TIGR00474 93 LAEEAIEAVTD---AARGYSNLEYDLETGKRGSRYSHVEGLLCELTGAED--ALVVNNNAAAVLLALNTL----AKGKEV 163 (454)
T ss_pred CCHHHHHHHHH---HHhcccchhccccccccchHHHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHh----CCcCEE
Confidence 66666555543 3444442111111 1123456788899999999987 456788887665544332 289999
Q ss_pred EEcCCCChhH----HHHHHHhhcCCCeEEEEeCc------hhhhc-cCCCEeEEEEEcC-CC--Ce--eeccHHHHHHHH
Q 001989 259 IIASNCHPQT----IDICITRADGFDIKVVVSDL------KDIDY-KSGDVCGVLVQYP-GT--EG--EVLDYGDFIKNA 322 (985)
Q Consensus 259 lv~~~~H~s~----~~~~~~~a~~~gi~v~~v~~------~~l~~-l~~~t~~V~v~~p-n~--~G--~v~di~~I~~~a 322 (985)
|+++.+|+++ .-+. ..+..|+++++++. +++++ ++++|++|++.++ |+ .| .+.|+++|+++|
T Consensus 164 Ivs~~e~v~~ggs~~i~~--~~~~~G~~~~~v~~~~~~~l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la 241 (454)
T TIGR00474 164 IVSRGELVEIGGSFRIPD--VMEQSGAKLVEVGTTNRTHLKDYEDAITENTALLLKVHTSNYRIVGFTEEVSIAELVALG 241 (454)
T ss_pred EECCChhhhhcchhhHHH--HHHHcCCEEEEeCCCCCCCHHHHHHhcCcCCEEEEEEccCcccccCCCCCCCHHHHHHHH
Confidence 9999998543 2221 23457999999864 45666 8899999988775 54 46 578999999999
Q ss_pred HhCCcEEEEEecCcc-------ccC-----CCCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceee
Q 001989 323 HANGVKVVMATDLLA-------LTI-----LKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVG 389 (985)
Q Consensus 323 ~~~galliV~a~~~~-------lg~-----l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG 389 (985)
|++|++++||. ... +|+ +..+.++|||++++|+ |+| |||++|++++++++++++...-++
T Consensus 242 ~~~g~~vivD~-~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~L------gGp~~G~i~g~~~~i~~l~~~~l~ 314 (454)
T TIGR00474 242 REHGLPVMEDL-GSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLL------GGPQAGIIVGKKELIERLKKNPLT 314 (454)
T ss_pred HHcCCeEEEEC-CCcccccchhccCCCCcccccHhHcCCCEEEecCcccc------CCCeEEEEEECHHHHHhhhhchhH
Confidence 99999999953 110 111 1234579999999999 655 556789999999888776321111
Q ss_pred eeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH--HH----HHhCcchHHH---HHHHHHHHHHHHHHH
Q 001989 390 VSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM--YA----VYHGPEGLKT---IAQRVHGLAGTFALG 460 (985)
Q Consensus 390 ~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~--~l----~~~g~~Gl~~---i~~~~~~~a~~l~~~ 460 (985)
|. .|-.| -.+.++.+++ |+ ++..-.|++. ..+++.++|..+.+.
T Consensus 315 -----------------r~--lr~~k--------~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~ 367 (454)
T TIGR00474 315 -----------------RA--LRVDK--------LTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKR 367 (454)
T ss_pred -----------------HH--HhhCh--------HHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHH
Confidence 00 00011 0122222222 11 1222223332 234556677888888
Q ss_pred HhcC--CCe--EEcC-C--------C--CcceEE--EecCC--HHHHHHHHHHcCcee-eeecCCeEEEEeccCCCHHHH
Q 001989 461 LKKL--GTV--EVQG-L--------P--FFDTVK--VKCAD--AHAIASAAYKIEMNL-RVVDSNTVTASFDETTTLEDV 520 (985)
Q Consensus 461 L~~~--g~~--~~~~-~--------~--~~~~~~--~~~~~--~~~v~~~L~~~GI~~-~~~~~~~lris~t~~~t~edI 520 (985)
|++. .++ ++.. . | ..+.+. +...+ +.++.++|++....+ ..+..+.+.+-+-.. .++|+
T Consensus 368 L~~~~~~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~~~~~~~l~~~lr~~~~~ii~r~~~~~~~ld~r~~-~~~~~ 446 (454)
T TIGR00474 368 LKAALGPGFELEIVPGLSQVGGGSLPDERLPSYAVTLTPDGLSAEKLEARLRELPPPIIGRIEDDRFLLDLRTL-LEDEE 446 (454)
T ss_pred HHhhccCCceEEEEEcCCcccCCCCcCCCCCeEEEEEecCCCCHHHHHHHHhcCCCCEEEEEECCEEEEEeCcC-CHHHH
Confidence 8763 123 3331 1 1 133444 44333 889999999765432 224456666655433 56788
Q ss_pred HHHHHHH
Q 001989 521 DKLFIVF 527 (985)
Q Consensus 521 d~li~aL 527 (985)
+.++++|
T Consensus 447 ~~~~~~~ 453 (454)
T TIGR00474 447 ELLIEAL 453 (454)
T ss_pred HHHHHHh
Confidence 8888776
No 277
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=99.68 E-value=3.5e-15 Score=175.12 Aligned_cols=323 Identities=15% Similarity=0.154 Sum_probs=194.6
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~ 671 (985)
..||++++.+..+...+...-..+ .++. +...++.+++++.+..-...++.+||++|++++++.+|.|
T Consensus 111 ~~lGh~~p~v~~av~~ql~~~~~~--~~~~----------~~~~~lAe~l~~~~p~~~~v~f~~SGsEA~e~AlklAR~~ 178 (474)
T PLN02482 111 AIIGHADDEVLAALAETMKKGTSF--GAPC----------LLENVLAEMVIDAVPSVEMVRFVNSGTEACMGVLRLARAY 178 (474)
T ss_pred cccCCCCHHHHHHHHHHHhhCCCC--CCCC----------HHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHh
Confidence 457888777766655544221122 1121 1234677888888743233467799999999999999886
Q ss_pred HHhcCCCCCCEEEE-cCCCCcccHHHHHH-------------CCc------EEEEEcCCCCCCCCHHHHHHHHHhcCCCE
Q 001989 672 HKARGDHHRNVCII-PVSAHGTNPATAAM-------------CGM------KIVSVGTDAKGNINIEELRKAAEANRDNL 731 (985)
Q Consensus 672 ~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~-------------~G~------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t 731 (985)
+++++||. ...+||.+...... .|+ .+..+|. .|+++|++.++++.+++
T Consensus 179 ------tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----nd~~~l~~~l~~~~~~i 247 (474)
T PLN02482 179 ------TGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY-----NDLEAVKKLFEANKGEI 247 (474)
T ss_pred ------cCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC-----CChHHHHHHHHhCCCce
Confidence 34567775 66799965332111 111 1233343 38999999998665678
Q ss_pred EEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCC---Ccc--CCcEEEeCCcccccccCCCC
Q 001989 732 STLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSP---GYI--GADVCHLNLHKTFCIPHGGG 802 (985)
Q Consensus 732 ~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~p---g~~--g~Di~~~s~hK~l~~p~g~G 802 (985)
++|+++-. +..|.+.++ +++|.++|+++|+++|+|+++. +. ..... ..+ .+|++++ .|.+ ++|
T Consensus 248 AavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~t-Gf-R~g~~ga~~~~gv~PDi~t~--gK~l----ggG 319 (474)
T PLN02482 248 AAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMT-GF-RIAYGGAQEYFGITPDLTTL--GKVI----GGG 319 (474)
T ss_pred EEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-Ce-ecCcchHhHHhCCCCCEEEe--cchh----hCC
Confidence 88877653 456776522 6789999999999999999873 22 11111 112 3788765 3776 334
Q ss_pred CCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 001989 803 GPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYM 882 (985)
Q Consensus 803 GPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l 882 (985)
-| +|.+++++++.+.+... + .....+++.|+++.++++.+.|..+..++ ..++..++.++|
T Consensus 320 ~P-igav~g~~ei~~~~~~~--~-------------~~~~~~T~~gnpl~~aAala~L~~l~~~~---~~~~~~~~g~~l 380 (474)
T PLN02482 320 LP-VGAYGGRREIMEMVAPA--G-------------PMYQAGTLSGNPLAMTAGIHTLKRLQQPG---TYEYLDKITKKL 380 (474)
T ss_pred Cc-eEEEEEcHHHHHhhccC--C-------------CcccccCcchhHHHHHHHHHHHHHHhccC---HHHHHHHHHHHH
Confidence 45 45557787776655311 0 00112345567788888888898886554 345667788899
Q ss_pred HHHhhcc-----CCeeecCCCCceeeEEEEEecCcc---ccCCCC---HHHHHHHHHHCCCccCCCCCCCCCEEEEeccC
Q 001989 883 AKRLEKH-----YPILFRGVNGTVAHEFIVDLRGLK---NTAGIE---PEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTE 951 (985)
Q Consensus 883 ~~~L~~g-----~~l~~~~~~~~~~~~~iv~~~~~~---~~~g~~---~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~ 951 (985)
+++|++. +.+...+. +..+. +.+...... .....+ ...+.+.|.++|+++....++. + .|+.
T Consensus 381 ~~~L~~l~~~~g~~~~~~~v-~g~~g-i~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~~~~----~-~psl 453 (474)
T PLN02482 381 IQGILEAGKKAGHEMCGGYI-SGMFG-FFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQFEA----G-FTSL 453 (474)
T ss_pred HHHHHHHHHhcCCCEEEccc-ceEEE-EEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccCCCC----C-cCCC
Confidence 9888752 22221111 12111 111110000 000001 3467888899999986544332 1 3788
Q ss_pred CCCHHHHHHHHccCChhHHHHh
Q 001989 952 SESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 952 ~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.+|++|||+ +++++++++.+
T Consensus 454 ~ht~~dId~--~l~al~~~l~~ 473 (474)
T PLN02482 454 AHTEEDIDF--TIAAAERVLAR 473 (474)
T ss_pred CCCHHHHHH--HHHHHHHHHHh
Confidence 899999999 88899888765
No 278
>PRK12414 putative aminotransferase; Provisional
Probab=99.68 E-value=5.3e-15 Score=170.96 Aligned_cols=323 Identities=11% Similarity=0.114 Sum_probs=193.8
Q ss_pred cccccccccCCCcccccccccccccc-ccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc---cc-eecCcHHHHHHHHH
Q 001989 591 MIPLGSCTMKLNATTEMMPVTWPSFA-NIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS---FS-LQPNAGAAGEYAGL 665 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~~~~~~f~-~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~---~~-~~~~sGa~a~~a~l 665 (985)
++.|+.+.+.+++..+.......... ....|.| .+|..++.+++++++++++|.+. .+ +..++|++|...++
T Consensus 31 ~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~ 107 (384)
T PRK12414 31 ALNLSQGAPNFAPDPALVEGVARAMRDGHNQYAP---MAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAI 107 (384)
T ss_pred eEEcCCCCCCCCCCHHHHHHHHHHHHhCCCCcCC---CCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHH
Confidence 56777766665543322221100000 1123433 46888888899999999999752 23 44455555553333
Q ss_pred HHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcc
Q 001989 666 MVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYP-STHG 743 (985)
Q Consensus 666 ~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G 743 (985)
+.+. .++|+|+++++.|..+...++..|.+++.+|+++ ++.+|+++|+++++ +++++|++++| |++|
T Consensus 108 ---~~l~-----~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~---~~~~~v~i~~p~NPTG 176 (384)
T PRK12414 108 ---SALV-----HPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAIT---PRTRMIIVNTPHNPSA 176 (384)
T ss_pred ---HHhc-----CCCCEEEEeCCCccchHHHHHHcCCEEEEEecCccccccCHHHHHhhcC---cccEEEEEcCCCCCCC
Confidence 3321 4789999999888777777788999999999874 46799999999997 78999999998 5799
Q ss_pred ccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC-CCCC-Cc----cCCcEEEeCCcccccccCCCCCCceEEEEEccc
Q 001989 744 VYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG-LTSP-GY----IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH 814 (985)
Q Consensus 744 ~i~--~di~eI~~la~~~galliVD~a~~~~~-~~-l~~p-g~----~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~ 814 (985)
.+. .++++|+++|+++|+++++|+++..-. .+ ...+ .. .+--+++.|++|.|++| |.++|+++++++
T Consensus 177 ~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~p----GlRiG~~v~~~~ 252 (384)
T PRK12414 177 TVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVT----GWRVGYCLAPAE 252 (384)
T ss_pred cCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCc----cceEEEEecCHH
Confidence 873 268999999999999999999874211 11 0001 11 11237788899988654 678999999877
Q ss_pred ccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCee
Q 001989 815 LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPIL 893 (985)
Q Consensus 815 l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~ 893 (985)
+...+.... .....+.+...+. ++..+|.. + +.+.+..+...++++++.+.|++ ++.+
T Consensus 253 l~~~l~~~~--------------~~~~~~~s~~~q~----a~~~~l~~-~-~~~~~~~~~~~~~r~~l~~~L~~~g~~~- 311 (384)
T PRK12414 253 LMDEIRKVH--------------QFMVFSADTPMQH----AFAEALAE-P-ASYLGLGAFYQRKRDLLARELAGSRFEL- 311 (384)
T ss_pred HHHHHHHHH--------------hheecCCCcHHHH----HHHHHhcC-C-hHHHHHHHHHHHHHHHHHHHHHhCCCee-
Confidence 654432110 0001111111121 11122221 1 22333444566778888888887 4333
Q ss_pred ecCCCCceeeEEEEEecCccccCCCCHHHHH-HHHHHCCCccCCC-CCC---C-CCEEEEeccCCCCHHHHHH
Q 001989 894 FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVA-KRLMDYGFHGPTM-SWP---V-PGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 894 ~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~-~~L~~~Gi~~~~~-~~p---~-~~~lris~t~~~t~eeId~ 960 (985)
. .+.+.++ +.++++.. .+....+++ +.|.++||.+... .|. . .+++||++.. ++++++.
T Consensus 312 ~-~~~gg~~--~~~~~~~~---~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~--~~~~~~~ 376 (384)
T PRK12414 312 L-PSEGSFF--MLARFRHF---SDESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSK--DDATLVE 376 (384)
T ss_pred c-CCCcceE--EEEccccc---CCCCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecC--CHHHHHH
Confidence 2 2223332 23454311 012345566 5566789986542 231 1 4689999984 5777777
No 279
>PLN00144 acetylornithine transaminase
Probab=99.68 E-value=1.1e-14 Score=167.86 Aligned_cols=321 Identities=16% Similarity=0.171 Sum_probs=197.2
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~ 671 (985)
..||++++.+..+...+......+...+. . +...++.+.|+++++.+ ..++.+||++|++++++.+|.|
T Consensus 27 ~~lGh~~p~v~~ai~~q~~~~~~~~~~~~-~---------~~~~~la~~l~~~~~~~-~v~f~~sGseA~e~AlklAr~~ 95 (382)
T PLN00144 27 NALGHGDPDWVKAVAEQAGTLAHVSNVYH-T---------IPQVELAKRLVASSFAD-RVFFCNSGTEANEAAIKFARKY 95 (382)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCcccccc-C---------HHHHHHHHHHHhcCCCC-eEEEeCCcHHHHHHHHHHHHHH
Confidence 35788877776655444322222221111 1 12346777888877654 3567899999999999999987
Q ss_pred HHhcCCCC-------CCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCCCCCCHHHHHHHHHhcCCCE
Q 001989 672 HKARGDHH-------RNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAKGNINIEELRKAAEANRDNL 731 (985)
Q Consensus 672 ~~~~g~~~-------~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t 731 (985)
...++..+ +.+||. ...+||....+....+- .+..+|. .|+++|++.+. ++++
T Consensus 96 ~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~--~~~~ 168 (382)
T PLN00144 96 QRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEY-----GNLEAARKLIQ--KGKT 168 (382)
T ss_pred HhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCC-----CCHHHHHHhcC--CCCe
Confidence 53332111 356665 67899987665443221 1334444 38999999885 2567
Q ss_pred EEEEEEcC-CCccccc-cC--HHHHHHHHHHcCCEEEEEccccccccCCCCC-----CccCCcEEEeCCcccccccCCCC
Q 001989 732 STLMVTYP-STHGVYE-EG--IDEICKIIHDNGGQVYMDGANMNAQVGLTSP-----GYIGADVCHLNLHKTFCIPHGGG 802 (985)
Q Consensus 732 ~~Vvv~~p-n~~G~i~-~d--i~eI~~la~~~galliVD~a~~~~~~~l~~p-----g~~g~Di~~~s~hK~l~~p~g~G 802 (985)
++|+++-. +..|++. ++ +++|.++|+++|+++|+|+++. +++-...+ ....+|++++ .|.++ +
T Consensus 169 aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~t-g~gr~g~~~~~~~~~~~PDi~t~--sK~l~-----~ 240 (382)
T PLN00144 169 AAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQC-GLGRTGYLWAHEAYGVEPDIMTL--AKPLA-----G 240 (382)
T ss_pred EEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCccchHhhhhhcCCCCCEEEe--ccccc-----C
Confidence 77777532 3444543 24 8999999999999999999873 22111111 1224687766 48874 3
Q ss_pred CCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 001989 803 GPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYM 882 (985)
Q Consensus 803 GPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l 882 (985)
|-.+|++++++++.+.+.... ..+++.++++.++++.+.|..+..+.+.+ +.....+++
T Consensus 241 G~pig~v~~~~~~~~~~~~~~------------------~~~T~~~~pl~~aaa~a~l~~i~~~~~~~---~~~~~g~~l 299 (382)
T PLN00144 241 GLPIGAVLVTEKVASAINPGD------------------HGSTFAGGPLVCNAALAVLDKISKPGFLA---SVAKKGEYL 299 (382)
T ss_pred CcceEEEEEcHHHHhccCCCC------------------CCCCCCCCHHHHHHHHHHHHHHhhchHHH---HHHHHHHHH
Confidence 445888888887766553210 01123345666777777788876555543 445555666
Q ss_pred HHHhhc---cCCee--ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHH
Q 001989 883 AKRLEK---HYPIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSW 957 (985)
Q Consensus 883 ~~~L~~---g~~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~ee 957 (985)
.+.|++ ..+.. +.+ .+ .+ +.+.+. .+...+.+++.++|+.+..... .+.||++|+...|++|
T Consensus 300 ~~~l~~~~~~~~~~~~vrg-~G-~~--~~l~l~-------~~~~~~~~~~~~~Gv~i~~~~~--~~~lrl~p~~~~~~~~ 366 (382)
T PLN00144 300 RELLRRKLGGNPHVKEVRG-VG-LL--VGIQLD-------VPAGPLVDACRDSGLLVLTAGK--GDVVRLVPPLVISEAE 366 (382)
T ss_pred HHHHHHHHhhCCCceeeec-Cc-eE--EEEEec-------CccHHHHHHHHHCCeEEeecCC--CCEEEEeCCCccCHHH
Confidence 665543 12211 112 12 22 223332 2356789999999998754321 3799999999899999
Q ss_pred HHHHHccCChhHHHHhh
Q 001989 958 TGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 958 Id~~~~~~~l~~~~~~~ 974 (985)
|+. ++++|++++.++
T Consensus 367 i~~--~~~~l~~~l~~~ 381 (382)
T PLN00144 367 LEQ--AVEILADCLPAL 381 (382)
T ss_pred HHH--HHHHHHHHHHhc
Confidence 999 888888888653
No 280
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=99.68 E-value=2e-15 Score=172.51 Aligned_cols=280 Identities=14% Similarity=0.089 Sum_probs=179.4
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCC-CEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHR-NVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~-~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
.++++.+++.+|.+..++..+.|++ +. .++++.+. .++ ++|+++++.+..+...++..|++++.+|++.+
T Consensus 63 ~~Lr~aia~~~~~~~~~I~it~Gs~~~i---~~~~~~~~-----~~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~~~~ 134 (354)
T PRK04635 63 PELINAYSAYAGVAPEQILTSRGADEAI---ELLIRAFC-----EPGQDSIACFGPTYGMYAISAETFNVGVKALPLTAD 134 (354)
T ss_pred HHHHHHHHHHhCcCHHHEEEeCCHHHHH---HHHHHHhc-----CCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCCC
Confidence 3678889999999887766666654 43 33333331 245 78999888666666667889999999999877
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHc-CCEEEEEccccccccCCCCC----CccCCcE
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDN-GGQVYMDGANMNAQVGLTSP----GYIGADV 786 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~-galliVD~a~~~~~~~l~~p----g~~g~Di 786 (985)
+.+|++.++ .+ +++++|++++| |++|.+. +.+++.++++.. ++++++|+++.. ....... ....-=+
T Consensus 135 ~~~~~~~l~-~~----~~~~li~i~nP~NPTG~~~-~~~~l~~l~~~~~~~~vivDeay~~-~~~~~s~~~~~~~~~~~i 207 (354)
T PRK04635 135 YQLPLDYIE-QL----DGAKLVFICNPNNPTGTVI-DRADIEQLIEMTPDAIVVVDEAYIE-FCPEYSVADLLASYPNLV 207 (354)
T ss_pred CCCCHHHHH-hc----cCCCEEEEeCCCCCCCccC-CHHHHHHHHHhCCCcEEEEeCchHh-hccCcchHHHHhhCCCEE
Confidence 889999887 33 57899999999 4799998 889999998764 799999998732 1110000 0111114
Q ss_pred EEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
++.|++|+|+.| |.++|++++++++.+.+.... ...++++ ....++.+++...+.+
T Consensus 208 v~~S~SK~~~l~----GlRlG~~i~~~~~~~~l~~~~--------------~~~~~~~------~~~~~a~~~l~~~~~~ 263 (354)
T PRK04635 208 VLRTLSKAFALA----GARCGFTLANEELIEILMRVI--------------APYPVPL------PVSEIATQALSEAGLA 263 (354)
T ss_pred EEechHHHhhhh----HHHHhhhhCCHHHHHHHHhhc--------------CCCCCCH------HHHHHHHHHHhcccHH
Confidence 677889988543 678999998877665442110 0001111 1112223334332333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-CCCCCEE
Q 001989 867 GLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-WPVPGTL 945 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~p~~~~l 945 (985)
-+++..+...++++++.+.|++...+.+.++.+. + +.++++ +..++.+.|.++||.+.... ...++++
T Consensus 264 ~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~-f--~~~~~~--------~~~~~~~~l~~~gv~v~~~~~~~~~~~l 332 (354)
T PRK04635 264 RMKFQVLDLNAQGARLQAALSMYGGAKVLEGNGN-Y--VLAKFD--------DVDAVFKALWDAGIVARAYKDPRLANCI 332 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceECCCCCc-E--EEEECC--------CHHHHHHHHHHCCEEEEECCCCCCCCeE
Confidence 3444445566777888899986211222222232 2 334443 46788889999999875433 2235799
Q ss_pred EEeccCCCCHHHHHHHHccCChhH
Q 001989 946 MIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 946 ris~t~~~t~eeId~~~~~~~l~~ 969 (985)
||++ .+.+|+++ ++++|++
T Consensus 333 Ris~---~~~e~~~~--l~~al~~ 351 (354)
T PRK04635 333 RFSF---SNRAETDK--LIGLIRN 351 (354)
T ss_pred EEEe---CCHHHHHH--HHHHHHH
Confidence 9997 68999999 6666653
No 281
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=99.68 E-value=6.1e-15 Score=170.16 Aligned_cols=290 Identities=20% Similarity=0.190 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCcccHHHHHHCCcEE---EEEc
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPATAAMCGMKI---VSVG 708 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~-~~Hg~~~~~a~~~G~~v---v~v~ 708 (985)
...++++.+++++|.+ ..+..+||+++++.++.+++.+...++ .++++|++++ .+|+.........+-.. ...+
T Consensus 70 ~~~~l~~~la~~~g~~-~~~~~~sg~~a~~~a~~~~~~~~~~~~-~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~ 147 (379)
T TIGR00707 70 PQEELAEKLVEHSGAD-RVFFCNSGAEANEAALKLARKYTGDKG-KEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEP 147 (379)
T ss_pred HHHHHHHHHHhhCCCC-EEEEeCCcHHHHHHHHHHHHHHhhccC-CCCCeEEEECCCcCCccHHHHHhcCChhhhccCCC
Confidence 3568899999999987 346678899988877777765432122 1357888754 56665444322211110 0112
Q ss_pred CCCCC----CCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc---cCHHHHHHHHHHcCCEEEEEccccccccCCCC--
Q 001989 709 TDAKG----NINIEELRKAAEANRDNLSTLMVTYPS-THGVYE---EGIDEICKIIHDNGGQVYMDGANMNAQVGLTS-- 778 (985)
Q Consensus 709 ~d~~g----~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~---~di~eI~~la~~~galliVD~a~~~~~~~l~~-- 778 (985)
...+. ..|+++|+++++ +++++|+++.++ ++|++. .++++|.++|+++|+++++|+++. +++.-..
T Consensus 148 ~~~~~~~~~~~d~~~l~~~~~---~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~-~~~~~g~~~ 223 (379)
T TIGR00707 148 LVPGFSYAPYNDIESLKKAID---DETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQT-GIGRTGKFF 223 (379)
T ss_pred CCCCceeeCCCCHHHHHHHhh---hCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccchhh
Confidence 21111 128999999997 688999997654 466542 248999999999999999999984 2211000
Q ss_pred C-C--ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHH
Q 001989 779 P-G--YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 779 p-g--~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~ 855 (985)
+ . ....|++++ +|+|+ +|.++|++++++++.+.+..... . ...+ +++..+.+
T Consensus 224 ~~~~~~~~~d~~t~--sK~~~-----~G~riG~~~~~~~~~~~~~~~~~-------------~-~~~~----~~~~~~~a 278 (379)
T TIGR00707 224 AYEHYGIEPDIITL--AKGLG-----GGVPIGATLAKEEVAEAFTPGDH-------------G-STFG----GNPLACAA 278 (379)
T ss_pred hHHhcCCCCCEEEE--ccccc-----CCcccEEEEEcHHHHhhhcCCCC-------------C-CCCC----CCHHHHHH
Confidence 1 1 123577654 58874 45779999988777655432100 0 0111 12344445
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeec-CCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCc
Q 001989 856 SYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFR-GVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 933 (985)
Q Consensus 856 a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~-~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~ 933 (985)
+++.|..+... +..++..+++++++++|++ +...... .+.... .+.+.++ .+..++.++|.++||.
T Consensus 279 a~aaL~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~--~~~~~~~-------~~~~~~~~~l~~~Gv~ 346 (379)
T TIGR00707 279 ALAVLEVIEKE---RLLENVKEKGDYFKERLEELGKNYPNKEVRGKGL--MLGIELE-------APCKDIVKKALEKGLL 346 (379)
T ss_pred HHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHhhCCCCccccCce--EEEEEec-------CcHHHHHHHHHHCCcE
Confidence 55666655433 2345666778888888875 3222111 000111 1334443 1467899999999998
Q ss_pred cCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 934 GPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 934 ~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
+.... .+.+|++++..+|++||++ +++.|+++
T Consensus 347 v~~~~---~~~lRi~~~~~~t~~~i~~--~~~~l~~~ 378 (379)
T TIGR00707 347 VNCAG---PKVLRFLPPLIITKEEIDE--AVSALEEA 378 (379)
T ss_pred EeeCC---CCEEEEECCCcCCHHHHHH--HHHHHHHh
Confidence 75432 3789999999999999999 66777654
No 282
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=99.68 E-value=1.1e-14 Score=169.72 Aligned_cols=329 Identities=12% Similarity=0.133 Sum_probs=196.5
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~air 669 (985)
..||++++.+..+...+..... +..+..+. .+...++.+.+++++... ...++.+||++|++++++.+|
T Consensus 52 ~~lGh~~p~v~~ai~~ql~~~~-~~~~~~~~--------~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr 122 (421)
T PRK09792 52 LNTGHRHPDLVAAVEQQLQQFT-HTAYQIVP--------YESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIAR 122 (421)
T ss_pred hcCCCCCHHHHHHHHHHHHhcc-CcccCccC--------CHHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHH
Confidence 4588887777766555432211 11110011 112346777888877432 234667899999999999988
Q ss_pred HHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc-------------EEEEEcCCCC--C---CCCHHHHHHHHHhc--C
Q 001989 670 AYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM-------------KIVSVGTDAK--G---NINIEELRKAAEAN--R 728 (985)
Q Consensus 670 ~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~-------------~vv~v~~d~~--g---~iD~e~L~~~i~~~--~ 728 (985)
.| +++.+||. ...+||....+....|. .+..+|+..+ + ..|++++++.++++ .
T Consensus 123 ~~------tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (421)
T PRK09792 123 AH------TGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEA 196 (421)
T ss_pred Hh------cCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCC
Confidence 75 24456665 66799987655432221 1334444211 1 12457888888632 3
Q ss_pred CCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCC------cc--CCcEEEeCCccccc
Q 001989 729 DNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSPG------YI--GADVCHLNLHKTFC 796 (985)
Q Consensus 729 ~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~pg------~~--g~Di~~~s~hK~l~ 796 (985)
+++++|+++-. +..|+..++ +++|.++|+++|+++|+|+++. ++.+.+ .+ .+|++++ .|+++
T Consensus 197 ~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t----g~gr~G~~~a~~~~~~~pDi~t~--gK~l~ 270 (421)
T PRK09792 197 KQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQS----GFARTGKLFAMDHYADKPDLMTM--AKSLA 270 (421)
T ss_pred CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc----CCCCCCchhHHHhcCCCCcEEEe--ehhhc
Confidence 56888887643 356765434 8999999999999999999873 222222 12 3687765 48874
Q ss_pred ccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHH
Q 001989 797 IPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAI 876 (985)
Q Consensus 797 ~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~ 876 (985)
||..+|.+++++++.+.+.... ..+++.|+++.++++.+.+..+..+.+ .++..
T Consensus 271 -----~G~pigav~~~~~i~~~~~~~~------------------~~~T~~gnpl~~aaa~a~l~~l~~~~~---~~~~~ 324 (421)
T PRK09792 271 -----GGMPLSGVVGNANIMDAPAPGG------------------LGGTYAGNPLAVAAAHAVLNIIDKESL---CERAN 324 (421)
T ss_pred -----CCCceEEEEEcHHHHhccCCCC------------------cCCCCCCCHHHHHHHHHHHHHHHhhhH---HHHHH
Confidence 3455788888887765543210 112344566777777788888765533 33455
Q ss_pred HHHHHHHHHhhc---cCCeeecCCCCceeeEEEEEecCc-c-ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccC
Q 001989 877 LNANYMAKRLEK---HYPILFRGVNGTVAHEFIVDLRGL-K-NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTE 951 (985)
Q Consensus 877 ~~a~~l~~~L~~---g~~l~~~~~~~~~~~~~iv~~~~~-~-~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~ 951 (985)
+..+++.+.|++ .++.+........+ +.+.+..- . .........+.+.+.++|+.+.... +..+.+|+.|+.
T Consensus 325 ~~g~~l~~~l~~l~~~~p~v~~vrG~Gl~--~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~g-~~~~~irl~P~l 401 (421)
T PRK09792 325 QLGQRLKNTLIDAKESVPAIAAVRGLGSM--IAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCG-AYGNVIRFLYPL 401 (421)
T ss_pred HHHHHHHHHHHHHHHhCCCcceecccceE--EEEEecCCccCCcchHHHHHHHHHHHHCCcEEeecC-CCCCEEEEeCCC
Confidence 666777776654 23321111110122 33444310 0 0000124668888899999874221 224899999999
Q ss_pred CCCHHHHHHHHccCChhHHHH
Q 001989 952 SESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 952 ~~t~eeId~~~~~~~l~~~~~ 972 (985)
..+++|||+ +++++.+++.
T Consensus 402 ~i~~~ei~~--~~~~l~~~l~ 420 (421)
T PRK09792 402 TIPDAQFDA--AMKILQDALS 420 (421)
T ss_pred cCCHHHHHH--HHHHHHHHHh
Confidence 999999999 7788877663
No 283
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=99.68 E-value=3e-15 Score=171.91 Aligned_cols=209 Identities=20% Similarity=0.165 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+.+ +.++||++|+..++.++. .++++||++...|+..... +...|++++.++.
T Consensus 42 ~~~le~~la~l~g~~~a-~~~~sG~~Ai~~~l~~l~--------~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~ 112 (369)
T cd00614 42 VDALEKKLAALEGGEAA-LAFSSGMAAISTVLLALL--------KAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDP 112 (369)
T ss_pred HHHHHHHHHHHHCCCCE-EEEcCHHHHHHHHHHHHc--------CCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeCC
Confidence 55888999999998764 555778877765555442 3678999988777654432 4467999999987
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++++++++ +++++|++++| |.+|.+. |+++|+++||++|++++||+++.. +.+..|..+|+|+++
T Consensus 113 ~-----d~~~l~~~i~---~~~~~v~~e~~~np~g~~~-dl~~i~~la~~~g~~livD~t~~~--~~~~~~~~~g~Divv 181 (369)
T cd00614 113 D-----DPEALEAAIK---PETKLVYVESPTNPTLKVV-DIEAIAELAHEHGALLVVDNTFAT--PYLQRPLELGADIVV 181 (369)
T ss_pred C-----CHHHHHHhcC---CCCeEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCcc--hhcCChhhhCCcEEE
Confidence 4 7999999997 78999999998 5789998 899999999999999999998753 333456678999999
Q ss_pred eCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.|++|+++.+ |...+|++++++ ++.+.+.... ...+...+ + ..+|+.+..+ +.
T Consensus 182 ~S~tK~l~g~---~~~~gG~v~~~~~~l~~~l~~~~-------------~~~g~~~~-----p---~~a~~~l~~l--~t 235 (369)
T cd00614 182 HSATKYIGGH---SDVIAGVVVGSGEALIQRLRFLR-------------LALGTILS-----P---FDAWLLLRGL--KT 235 (369)
T ss_pred eccceeccCC---CCceEEEEEeCcHHHHHHHHHHH-------------HhhCCCCC-----H---HHHHHHHcCC--CC
Confidence 9999998421 223588998876 5554432110 00111111 1 1233433333 45
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 001989 868 LTEASKIAILNANYMAKRLEK 888 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~ 888 (985)
+..+.++..+++.++++.|++
T Consensus 236 l~~r~~~~~~na~~la~~L~~ 256 (369)
T cd00614 236 LPLRMERHSENALKVAEFLEK 256 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 566777889999999999986
No 284
>PRK08912 hypothetical protein; Provisional
Probab=99.68 E-value=8.6e-15 Score=169.48 Aligned_cols=302 Identities=14% Similarity=0.097 Sum_probs=186.8
Q ss_pred hhhHHHHHHHHHHHHHHHhCCC--cc-cee-cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCc
Q 001989 627 AQGYQEMFNNLGEWLCTITGFD--SF-SLQ-PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGM 702 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~--~~-~~~-~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~ 702 (985)
.+|..++.+.+.+++.+.+|.+ .. .+. .+++++|...+ ++.+. .++++|+++++.|+.+...++..|+
T Consensus 62 ~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~---~~~~~-----~~gd~Vlv~~p~y~~~~~~~~~~g~ 133 (387)
T PRK08912 62 MMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAA---LLALV-----EPGDEVVLFQPLYDAYLPLIRRAGG 133 (387)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHH---HHHhc-----CCCCEEEEeCCCchhhHHHHHHcCC
Confidence 3676666666666766666653 33 444 44445554322 22221 3678999999888877777889999
Q ss_pred EEEEEcCCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC--
Q 001989 703 KIVSVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG-- 775 (985)
Q Consensus 703 ~vv~v~~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~-- 775 (985)
+++.+|+++ ++.+|+++|+++++ +++++|++++| |++|.+. .++++|.++|+++|+++++|.++.... .+
T Consensus 134 ~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~ 210 (387)
T PRK08912 134 VPRLVRLEPPHWRLPRAALAAAFS---PRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRR 210 (387)
T ss_pred EEEEEecCcccCcCCHHHHHHHhC---ccceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCC
Confidence 999999864 57899999999987 78899999998 5799886 147889999999999999999873111 10
Q ss_pred ---CC-CCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 776 ---LT-SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 776 ---l~-~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
+. .++..+.++++.|++|.|+.| |.++|++++++++.+.+.... .....+.++ ..+.
T Consensus 211 ~~~~~~~~~~~~~~i~~~S~SK~~g~~----GlRiG~~~~~~~~~~~l~~~~------------~~~~~~~~~--~~q~- 271 (387)
T PRK08912 211 HIPLMTLPGMRERTVKIGSAGKIFSLT----GWKVGFVCAAPPLLRVLAKAH------------QFLTFTTPP--NLQA- 271 (387)
T ss_pred CcChhhCCCccCceEEEeechhhccCc----CceeEEEecCHHHHHHHHHHH------------hhccccCCh--HHHH-
Confidence 10 111123568899999998653 678999999876654432100 000001110 0011
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-H
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-D 929 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~ 929 (985)
++...+. -..+-+++..++..++++++.+.|++ ++.+. .+.+.++ +.+.++.. ....+..++++.|. +
T Consensus 272 ---~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~g~~~--l~~~l~~~--~~~~~~~~~~~~l~~~ 341 (387)
T PRK08912 272 ---AVAYGLG-KPDDYFEGMRADLARSRDRLAAGLRRIGFPVL--PSQGTYF--LTVDLAPL--GLAEDDVAFCRRLVEE 341 (387)
T ss_pred ---HHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHhCCCccc--CCCcceE--EEeccccc--CCCCCHHHHHHHHHhc
Confidence 1112221 11223345555667788889999986 44432 2223222 23444310 01246778999875 5
Q ss_pred CCCccCCC-CC----CCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 930 YGFHGPTM-SW----PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 930 ~Gi~~~~~-~~----p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
+||.+... .| +..+++|+++.. +.++++. .++.|++.+.
T Consensus 342 ~gV~v~pg~~f~~~~~~~~~iRl~~~~--~~~~l~~--~l~rl~~~l~ 385 (387)
T PRK08912 342 AGVAAIPVSAFYEEDPVTSVVRFCFAK--RDATLDE--AVERLAAARR 385 (387)
T ss_pred CCEEEecchhhCCCCCCCCEEEEEEeC--CHHHHHH--HHHHHHHHHh
Confidence 79986532 22 235899999985 4788877 5566665544
No 285
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=99.68 E-value=1.9e-15 Score=172.56 Aligned_cols=278 Identities=15% Similarity=0.139 Sum_probs=178.1
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCC-CEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHR-NVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~-~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
.++++++++.+|.+..++..+.|++ +. .++++.+. .++ ++|+++.+.|+.+...++..|++++.+|.+++
T Consensus 60 ~~l~~~~a~~~g~~~~~I~~~~Gs~e~i---~~~~~~~~-----~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~~~ 131 (351)
T PRK01688 60 KAVIENYAAYAGVKPEQVLVSRGADEGI---ELLIRAFC-----EPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTLDN 131 (351)
T ss_pred HHHHHHHHHHhCCCHHHEEEcCCHHHHH---HHHHHHhc-----CCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecCCC
Confidence 3678899999999887766665654 33 33344332 244 78999988777777778899999999999878
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHc--CCEEEEEccccccccCCCCC----CccCCc
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDN--GGQVYMDGANMNAQVGLTSP----GYIGAD 785 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~--galliVD~a~~~~~~~l~~p----g~~g~D 785 (985)
+.+|++++++++ +++++|++++|| ++|.+. +.+++.++++.. ++++++|+++.. +...... ....-=
T Consensus 132 ~~~d~~~l~~~~----~~~~lv~l~nPnNPTG~~~-~~~~l~~l~~~~~~~~~vivDEay~~-f~~~~s~~~~~~~~~n~ 205 (351)
T PRK01688 132 WQLDLPAIADNL----DGVKVVYVCSPNNPTGNLI-NPQDLRTLLELTRGKAIVVADEAYIE-FCPQASLAGWLAEYPHL 205 (351)
T ss_pred CCCCHHHHHHhc----cCCcEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCCcEEEEECchhh-cCCCCChHHHHhhCCCE
Confidence 899999999887 378899999995 799998 677776666532 689999998732 1110010 111122
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
+++.|++|+|+. .|.++|++++++++.+.+.... ...++++ ....++.++|..-+.
T Consensus 206 iv~rSfSK~~gl----aGlRiGy~i~~~~~i~~l~~~~--------------~~~~v~~------~~~~~a~~~L~~~~~ 261 (351)
T PRK01688 206 VILRTLSKAFAL----AGLRCGFTLANEEVINLLLKVI--------------APYPLST------PVADIAAQALSPQGI 261 (351)
T ss_pred EEEecchHhhcC----HHHHHhHHhCCHHHHHHHHhcc--------------CCCCCCH------HHHHHHHHHHhcchH
Confidence 566778888754 3678899998877665443110 0012221 111222233332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc--CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-C-CC
Q 001989 866 KGLTEASKIAILNANYMAKRLEKH--YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-W-PV 941 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~g--~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~-p~ 941 (985)
+-+++..+...++++++.+.|++. +...++ + +..+ +.++++ +..++.+.|.++||.+.... + ..
T Consensus 262 ~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p-s-~~nf--i~~~~~--------~~~~l~~~L~~~gi~vr~~~~~~~~ 329 (351)
T PRK01688 262 AAMRERVAEINANRQWLIAALKEIPCVEQVFD-S-ETNY--ILARFT--------ASSAVFKSLWDQGIILRDQNKQPGL 329 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCeECC-C-CCcE--EEEEcC--------CHHHHHHHHHHCCeEEEECCCcCCC
Confidence 334455555667788899988762 222222 2 2222 334442 46889999999999886432 2 34
Q ss_pred CCEEEEeccCCCCHHHHHHHHccCCh
Q 001989 942 PGTLMIEPTESESKSWTGIVMLSSPS 967 (985)
Q Consensus 942 ~~~lris~t~~~t~eeId~~~~~~~l 967 (985)
++++||++. +.+|+++ ++++|
T Consensus 330 ~~~iRis~~---~~~e~~~--l~~al 350 (351)
T PRK01688 330 SNCLRITIG---TREECQR--VIDAL 350 (351)
T ss_pred CCeEEEeCC---CHHHHHH--HHHhh
Confidence 589999984 7899999 44444
No 286
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.67 E-value=5.2e-15 Score=172.25 Aligned_cols=239 Identities=18% Similarity=0.106 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch--
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK-- 289 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~-- 289 (985)
.+.++++.+|++.|.+. +.++++||+++.+++.++ +. +||+||++..+|+++...+...++..|++++++|++
T Consensus 65 ~~~~le~~lA~l~g~~~--av~~sSGt~Al~~al~~l-l~--~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~d~ 139 (433)
T PRK08134 65 TVAVLEERVAALEGGVG--AIATASGQAALHLAIATL-MG--AGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPGDI 139 (433)
T ss_pred HHHHHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHH-hC--CCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCCCH
Confidence 36678899999999876 678899998888777665 33 899999999999988887765556789999999764
Q ss_pred -hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCC
Q 001989 290 -DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 290 -~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
++++ ++++|++|++++| |.+|.+.|+++|+++||++|++++||+ .++.+....|.++|||+++.|+ |++++ ++
T Consensus 140 ~~l~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~-t~a~~~~~~pl~~GaD~vv~S~tK~l~g-~g- 216 (433)
T PRK08134 140 DGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDS-TFTTPYLLRPFEHGADLVYHSATKFLGG-HG- 216 (433)
T ss_pred HHHHHhcCCCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEEC-CCcccccCCchhcCCCEEEeccccccCC-CC-
Confidence 5666 8899999999887 789999999999999999999999953 4566666667799999999999 65543 22
Q ss_pred CCCcEEEEEEch-------hhHhcCCCceeeee-ecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHH
Q 001989 366 GGPHAAFLATSQ-------EYKRMMPGRIVGVS-IDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVY 437 (985)
Q Consensus 366 GGP~~G~l~~~~-------~~~~~lp~~~vG~t-~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~ 437 (985)
.--+|++..+. +....+.+.+.|+. .....+ +... ......| ..++.+.... +....| |+..
T Consensus 217 -~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~--~~~~~~~-~~~~~~~G~~--ls~~~A--~l~~ 286 (433)
T PRK08134 217 -TAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEE--STVA--AFLLRAR-REGLRDFGAC--LSPMNA--WQLL 286 (433)
T ss_pred -CceEEEEEecCccccccccccccccCCcccccccchhhc--cchh--HHHHHHH-HHHHHhcCCC--CCHHHH--HHHh
Confidence 10113332221 22223333333320 000000 0000 0000011 1122222111 111122 2355
Q ss_pred hCcchHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 001989 438 HGPEGLKTIAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 438 ~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
.|-+-+..+.++..+++..+.+.|++...++
T Consensus 287 ~gL~tl~~R~~~~~~nA~~la~~L~~~p~V~ 317 (433)
T PRK08134 287 QGIETLPLRMERHVANTRKVVAFLASHPAVA 317 (433)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 6666778888888999999999999875454
No 287
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.67 E-value=1.2e-14 Score=167.94 Aligned_cols=288 Identities=14% Similarity=0.139 Sum_probs=179.3
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--cc-ceecCcH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--SF-SLQPNAG-AAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~~-~~~~~sG-a~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+.+.+++.+.+|.+ .. .+..++| +++... +++.+ ..++|+|+++++.++.+...++..|++
T Consensus 67 ~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~---~~~~~-----~~~gd~vlv~~P~y~~~~~~~~~~G~~ 138 (383)
T TIGR03540 67 EGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAH---IPLAF-----VNPGDIVLVPDPGYPVYRIGTLFAGGE 138 (383)
T ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHH---HHHHh-----CCCCCEEEEeCCCCcchHHHHHhcCCE
Confidence 566666666677776666663 33 3544444 444432 23332 147889999998887777778899999
Q ss_pred EEEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cCCC
Q 001989 704 IVSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VGLT 777 (985)
Q Consensus 704 vv~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~l~ 777 (985)
++.+|.+.+ ..+|++++++++. +++++|++++| |++|.+.+ .+++|.++|+++|+++++|+++..-. .+..
T Consensus 139 v~~v~~~~~~g~~~d~~~l~~~~~---~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~ 215 (383)
T TIGR03540 139 PYEMPLKEENGFLPDFDAIPEDIA---KKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYK 215 (383)
T ss_pred EEEEecCcccCCccCHHHHHhhcc---ccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCC
Confidence 999998643 4679999999887 68999999998 57999871 37999999999999999999974111 1100
Q ss_pred CC--C----ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 778 SP--G----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 778 ~p--g----~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
.+ . .....+++.|+.|+|+.| |.++|++++++++...+.... .....+.+. .
T Consensus 216 ~~~~~~~~~~~~~~i~~~SfSK~~g~~----GlRiG~~i~~~~l~~~~~~~~------------~~~~~~~~~------~ 273 (383)
T TIGR03540 216 APSFLEVDGAKDVGIEFHSLSKTYNMT----GWRIGMAVGNADLIAGLGKVK------------TNVDSGVFQ------A 273 (383)
T ss_pred CcCcccCCCcccCEEEEEecccccCCc----cceeeEEeCCHHHHHHHHHHH------------HhcccCCCh------H
Confidence 01 0 112346677888988543 677999998877654432100 000011110 1
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-H
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-D 929 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~ 929 (985)
...++..+|. -+.+-+++..+...++++++.+.|++ ++.+ ..+.+.++ +.+.++ .+.+..+++++|. +
T Consensus 274 ~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~--~~~~~~~~--~~~~l~-----~~~~~~~~~~~ll~~ 343 (383)
T TIGR03540 274 IQYAAIAALN-GPQDVVKEIRKIYQRRRDLLLEALKKIGIDV--EKPKATFY--VWVPVP-----EGYTSAEFAARLLEE 343 (383)
T ss_pred HHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHhCCCEe--cCCCcceE--EEEECC-----CCCCHHHHHHHHHHH
Confidence 1111223332 22344455555667888889999987 4333 22222222 345554 2457788998875 6
Q ss_pred CCCccCCC-CCCC--CCEEEEeccCCCCHHHHHH
Q 001989 930 YGFHGPTM-SWPV--PGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 930 ~Gi~~~~~-~~p~--~~~lris~t~~~t~eeId~ 960 (985)
+||.+... .|+. .+++||++. .+++++++
T Consensus 344 ~gi~v~~g~~f~~~~~~~~Ris~~--~~~~~l~~ 375 (383)
T TIGR03540 344 TGVVVTPGVGFGEYGEGYIRISLT--VPDERLEE 375 (383)
T ss_pred CCEEEecchhhCccCCCeEEEEec--CCHHHHHH
Confidence 79987542 2332 478999996 45666666
No 288
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=99.67 E-value=5.9e-15 Score=169.66 Aligned_cols=292 Identities=13% Similarity=0.122 Sum_probs=184.6
Q ss_pred HHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGN 714 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~ 714 (985)
.++++.+++.++++..++..++|++..+. .+++.+. .+++.|+++++.|..+...++..|.+++.+|.+.+ .
T Consensus 70 ~~Lr~~ia~~~~~~~~~I~it~G~~~~l~--~~~~~~~-----~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~-~ 141 (369)
T PRK08153 70 HDLRHALAAHHGVAPENIMVGEGIDGLLG--LIVRLYV-----EPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDD-R 141 (369)
T ss_pred HHHHHHHHHHhCCCHHHEEEcCCHHHHHH--HHHHHhc-----CCCCEEEECCCcchHHHHHHHHcCCeEEEeeCCCC-C
Confidence 47888999999988767766667653322 2222221 47889999988776666667788999999998655 4
Q ss_pred CCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHc--CCEEEEEccccccc-cC-CCCCCccCCc-EEE
Q 001989 715 INIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDN--GGQVYMDGANMNAQ-VG-LTSPGYIGAD-VCH 788 (985)
Q Consensus 715 iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~--galliVD~a~~~~~-~~-l~~pg~~g~D-i~~ 788 (985)
+|++++.+.+.. +++++|++++| |++|.+. +.+++.++++.. |+++++|+++..-. .+ .........+ +++
T Consensus 142 ~~~~~l~~~~~~--~~~~~i~l~~P~NPtG~~~-~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~ 218 (369)
T PRK08153 142 EDLDALLDAARR--ENAPLVYLANPDNPMGSWH-PAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRM 218 (369)
T ss_pred CCHHHHHHHhcc--cCCcEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhcCCCEEEE
Confidence 899998877642 57888999999 4699997 677777766543 89999999873110 11 0000111122 567
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
.|+.|+|++| |.++|++++++++.+.+.... ...+++ .....++.+++. ..+-+
T Consensus 219 ~SfSK~~g~~----GlRiG~~v~~~~~~~~l~~~~--------------~~~~~s------~~~q~~~~~~l~--~~~~~ 272 (369)
T PRK08153 219 RTFSKAYGLA----GARVGYAIGAPGTIKAFDKVR--------------NHFGMN------RIAQAAALAALK--DQAYL 272 (369)
T ss_pred ecchHhccCc----chheeeeecCHHHHHHHHHhh--------------cCCCCC------HHHHHHHHHHhc--CHHHH
Confidence 7778887543 778999999876654432110 011111 122222333332 22334
Q ss_pred HHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-CCCCCEEE
Q 001989 869 TEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-WPVPGTLM 946 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~p~~~~lr 946 (985)
++..+...++.+++.+.|++ ++.+ . +. +..+ +.++++. ......++.+.|.++||.+.... .+..+++|
T Consensus 273 ~~~~~~~~~~r~~~~~~L~~~g~~~-~-p~-~~~f--~~~~~~~----~~~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iR 343 (369)
T PRK08153 273 AEVVGKIAAARDRIAAIARANGLTP-L-PS-ATNF--VAIDCGR----DGAFARAVLDGLIARDIFVRMPGVAPLDRCIR 343 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcc-C-CC-cCcE--EEEECCC----CcccHHHHHHHHHHCCeEEeeCCCCCCCCeEE
Confidence 45555567777888888876 4432 1 11 2222 2344320 12357789999999999874211 12247999
Q ss_pred EeccCCCCHHHHHHHHccCChhHHHHhhccC
Q 001989 947 IEPTESESKSWTGIVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 947 is~t~~~t~eeId~~~~~~~l~~~~~~~~~~ 977 (985)
|++. +++|+++ ++++|+++++.++.|
T Consensus 344 is~~---~~~~~~~--~~~al~~~~~~~~~~ 369 (369)
T PRK08153 344 VSCG---PDEELDL--FAEALPEALEAARKG 369 (369)
T ss_pred EecC---CHHHHHH--HHHHHHHHHHHhhcC
Confidence 9984 8999999 889999999877654
No 289
>PRK04311 selenocysteine synthase; Provisional
Probab=99.67 E-value=1.7e-14 Score=168.29 Aligned_cols=306 Identities=17% Similarity=0.167 Sum_probs=184.3
Q ss_pred CcHHHHHHHHhCCccccccCCChhhHhh-hHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEE
Q 001989 180 VPPVILRNIMENPAWYTQYTPYQAEIAQ-GRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTF 258 (985)
Q Consensus 180 ~p~~v~~~i~~~~~~~t~~~pyq~e~sq-g~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~V 258 (985)
+|..+.+++.. ++..|......... ..-+.+.++++.+|+|+|++. +.+++++++++..++.++ .+||+|
T Consensus 98 l~~~v~eav~~---~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Gae~--a~vv~sgtaAl~l~l~~l----~~GdeV 168 (464)
T PRK04311 98 LSEAAIEAVTE---AARGYSNLEYDLATGKRGSRDRALAALLCALTGAED--ALVVNNNAAAVLLALNAL----AAGKEV 168 (464)
T ss_pred CCHHHHHHHHH---HHhcccccccchhhcccchHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHHHh----CCCCEE
Confidence 66666655543 23334321111211 112446678899999999885 667888887665544332 288999
Q ss_pred EEcCCCChhHHHH--HHHhhcCCCeEEEEeCc------hhhhc-cCCCEeEEEEEcC-CC--Ce--eeccHHHHHHHHHh
Q 001989 259 IIASNCHPQTIDI--CITRADGFDIKVVVSDL------KDIDY-KSGDVCGVLVQYP-GT--EG--EVLDYGDFIKNAHA 324 (985)
Q Consensus 259 lv~~~~H~s~~~~--~~~~a~~~gi~v~~v~~------~~l~~-l~~~t~~V~v~~p-n~--~G--~v~di~~I~~~a~~ 324 (985)
|+++.+|.++... +....+..|+++++++. +++++ ++++|++|++.++ |+ +| ...|+++|+++||+
T Consensus 169 Ivs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~~t~~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~ 248 (464)
T PRK04311 169 IVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTNRTHLRDYEQAINENTALLLKVHTSNYRIEGFTKEVSLAELAALGKE 248 (464)
T ss_pred EEcchhhhhcCcchhhHHHHHHCCcEEEEECCCCCCCHHHHHHhcCccCeEEEEEcCCCccccccCCcCCHHHHHHHHHH
Confidence 9999887632110 11123457999988864 45666 8899999998876 54 44 56799999999999
Q ss_pred CCcEEEEEecCc------cccCC-----CCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeee
Q 001989 325 NGVKVVMATDLL------ALTIL-----KPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSI 392 (985)
Q Consensus 325 ~galliV~a~~~------~lg~l-----~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~ 392 (985)
+|++++||+-.. .+|+. ..+.++|+|++++|+ |+| |||++|++++++++++++...-++
T Consensus 249 ~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~L------gGp~~G~i~g~~~li~~l~~~~~~--- 319 (464)
T PRK04311 249 HGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLL------GGPQAGIIVGKKELIARLKKHPLK--- 319 (464)
T ss_pred cCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccc------cCCceEEEEEcHHHHHHHhhchhH---
Confidence 999999964110 11111 123459999999999 655 567789999999988876321111
Q ss_pred cCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH--HH----HHhCcchH---HHHHHHHHHHHHHHHHHHhc
Q 001989 393 DSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM--YA----VYHGPEGL---KTIAQRVHGLAGTFALGLKK 463 (985)
Q Consensus 393 d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~--~l----~~~g~~Gl---~~i~~~~~~~a~~l~~~L~~ 463 (985)
+.+ |-.| ..+.++.+++ |+ ++.+-.++ ....++..++|..+++.|++
T Consensus 320 -----r~l-----------r~dk--------~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~ 375 (464)
T PRK04311 320 -----RAL-----------RVDK--------LTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKA 375 (464)
T ss_pred -----HHH-----------hcch--------HHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 000 0111 1233333333 21 12222232 22335556678888888876
Q ss_pred CC--Ce--EEcCC---------C--CcceEE--EecCC--HHHHHHHHHHcC--ceeeeecCCeEEEEeccCCCHHHHHH
Q 001989 464 LG--TV--EVQGL---------P--FFDTVK--VKCAD--AHAIASAAYKIE--MNLRVVDSNTVTASFDETTTLEDVDK 522 (985)
Q Consensus 464 ~g--~~--~~~~~---------~--~~~~~~--~~~~~--~~~v~~~L~~~G--I~~~~~~~~~lris~t~~~t~edId~ 522 (985)
.. ++ ++... | ..+.+. +...+ +.++.++|++.. |..+ +..+.+.+-+-.. .++|++.
T Consensus 376 ~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~~~~~~~l~~~lr~~~~~i~~r-~~~~~~~ld~r~~-~~~~~~~ 453 (464)
T PRK04311 376 ALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPKDRSLEALAARLRLLPPPVIGR-IEDGRLLLDLRTL-EEEDEER 453 (464)
T ss_pred ccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCCCCCHHHHHHHHhcCCCCEEEE-EECCEEEEEeCcC-CHHHHHH
Confidence 52 23 44311 1 134444 44333 899999999754 3343 4456666655433 5678888
Q ss_pred HHHHHhC
Q 001989 523 LFIVFAG 529 (985)
Q Consensus 523 li~aL~~ 529 (985)
++++|.+
T Consensus 454 ~~~~~~~ 460 (464)
T PRK04311 454 LAAALLE 460 (464)
T ss_pred HHHHHHH
Confidence 8888764
No 290
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=99.67 E-value=1.6e-14 Score=169.81 Aligned_cols=330 Identities=12% Similarity=0.103 Sum_probs=198.6
Q ss_pred cccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC----cccee-cCcHHHHHHHHH
Q 001989 591 MIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD----SFSLQ-PNAGAAGEYAGL 665 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~----~~~~~-~~sGa~a~~a~l 665 (985)
...||++++.+..+...+......+.+..-.. +...++.+.+++++..+ ...++ .+||++|+++++
T Consensus 74 ~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~---------~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~Al 144 (464)
T PRK06938 74 TLALGHNHPVVIEAIQQVLADELPLHTLDLTT---------PVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAAL 144 (464)
T ss_pred ccccCCCCHHHHHHHHHHHHhhhcccccccCC---------HHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHH
Confidence 34688887777766554432111111111011 12335666777776422 12234 479999999999
Q ss_pred HHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCCCCC------------CCHHHH
Q 001989 666 MVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDAKGN------------INIEEL 720 (985)
Q Consensus 666 ~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~~g~------------iD~e~L 720 (985)
+.+|.| +++.+||. ..++||....+....| -.+..+|.....+ .+++.+
T Consensus 145 klAr~~------tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l 218 (464)
T PRK06938 145 KLVKTA------TGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYL 218 (464)
T ss_pred HHHHHh------hCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHH
Confidence 998876 24556665 6689998766543221 1234455422111 236778
Q ss_pred HHHHHhcC---CCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCc
Q 001989 721 RKAAEANR---DNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GAD 785 (985)
Q Consensus 721 ~~~i~~~~---~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~D 785 (985)
++.+++.. +++++|+++-. ..-|++.+ -++++.++|+++|+++|+|+++ .|+.+.|.+ -+|
T Consensus 219 ~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~----tGfGRtG~~~a~e~~gv~PD 294 (464)
T PRK06938 219 ENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQ----SGFGRTGKMFAFEHAGIIPD 294 (464)
T ss_pred HHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc----cCCCcCcHHHHHHhcCCCCC
Confidence 88886422 36888888642 23466542 3899999999999999999876 455555533 279
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
+++++ |.+ ++|-| +|.++.++++ ..+... ...+++.|+++.++++.+.|..+..
T Consensus 295 iv~~g--Kgl----ggG~P-lsAv~~~~~~-~~~~~~------------------~~~~T~~gnpla~Aaa~a~L~~l~~ 348 (464)
T PRK06938 295 VVVLS--KAI----GGSLP-LAVVVYREWL-DTWQPG------------------AHAGTFRGNQMAMAAGSATLRYIKE 348 (464)
T ss_pred EEEee--ccc----cCCCc-eEEEeehhHh-hccCCC------------------CCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 99874 766 44445 5555667654 322110 1123456788888888899998877
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCcccc------CC---CCHHHHHHHHHHCC
Q 001989 866 KGLTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGLKNT------AG---IEPEDVAKRLMDYG 931 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~~~~------~g---~~~~~v~~~L~~~G 931 (985)
+++. ++..+..++|.++|++. ++++ +.+. ..+. -+.+..-... .. .....+.+.+.++|
T Consensus 349 ~~l~---~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~--Glm~--gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 421 (464)
T PRK06938 349 HRLA---EHAAAMGERLREHLRQLQRDYPQLGDVRGR--GLML--GVEIVDPQGEPDALGHPPANGELASLIQRECLRRG 421 (464)
T ss_pred hHHH---HHHHHHHHHHHHHHHHHHHhCCCeeeeecc--ceEE--EEEeccCcccccccccCCccHHHHHHHHHHHHHCC
Confidence 6554 45666778888888652 3322 1121 2222 2222100000 00 01345778888999
Q ss_pred CccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 932 FHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 932 i~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+.+.... +..+.||+.|+..+|++|||+ +++++++++..+.
T Consensus 422 ll~~~~g-~~~~~l~~~Ppl~it~~eid~--~~~~l~~~l~~~~ 462 (464)
T PRK06938 422 LILELGG-RHGSVVRFLPPLIITAEQIDE--VAEIFAEAVAAAV 462 (464)
T ss_pred eEEeecC-CCCCEEEEECCCccCHHHHHH--HHHHHHHHHHHHh
Confidence 9875322 123799999999999999999 8899999887654
No 291
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=99.67 E-value=1.6e-14 Score=166.86 Aligned_cols=213 Identities=22% Similarity=0.213 Sum_probs=154.9
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--- 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~--- 289 (985)
+.++++.+|+++|.+. +.++.+|++++.++++++ . ++||+||+++..|+++...+...++..|++++++|.+
T Consensus 63 ~~~le~~la~l~g~~~--~v~~ssG~~Ai~~al~al-~--~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~ 137 (390)
T PRK08133 63 VTMFQERLAALEGAEA--CVATASGMAAILAVVMAL-L--QAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLTDLD 137 (390)
T ss_pred HHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHH-h--CCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCCCHH
Confidence 5568899999999875 678889998887776655 2 3899999999999998887766566789999999764
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|.++|+|++++|. |+++++ |
T Consensus 138 ~l~~~i~~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD-~t~~~~~~~~pl~~g~Divv~S~sK~~~g~---g 213 (390)
T PRK08133 138 AWRAAVRPNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVD-NCFCTPALQQPLKLGADVVIHSATKYLDGQ---G 213 (390)
T ss_pred HHHHhcCcCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEE-CCCcccccCCchhhCCcEEEeecceeecCC---c
Confidence 5666 7889999999998 78999999999999999999999995 34555555667788999999998 777532 1
Q ss_pred CCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 367 GPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 367 GP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
-.-+|++..+++.++++- ...+..|. +.+++ .+ |+...|.+.+..+
T Consensus 214 ~~~GG~vv~~~~~~~~~~-------------------------~~~~~~g~----~~~~~---~a--~~~l~gl~tl~~R 259 (390)
T PRK08133 214 RVLGGAVVGSKELMEEVF-------------------------GFLRTAGP----TLSPF---NA--WVFLKGLETLSLR 259 (390)
T ss_pred ceEeEEEEcCHHHHHHHH-------------------------HHHHHhCC----CCCHH---HH--HHHHcccchHHHH
Confidence 122367777766544330 00011110 11122 11 2234455567778
Q ss_pred HHHHHHHHHHHHHHHhcCCCeE
Q 001989 447 AQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
.++..+++.++.+.|++..+++
T Consensus 260 ~~~~~~~a~~la~~L~~~p~v~ 281 (390)
T PRK08133 260 MEAHSANALALAEWLEAHPGVE 281 (390)
T ss_pred HHHHHHHHHHHHHHHHhCCCee
Confidence 8888899999999999884465
No 292
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=99.67 E-value=2.7e-15 Score=171.99 Aligned_cols=281 Identities=10% Similarity=0.102 Sum_probs=179.7
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++.+++++|.+..++..++|++ +. ..+++.+. .++++|+++++.+..+...++..|++++.+|.+ ++
T Consensus 67 ~~Lr~aia~~~~~~~~~I~vt~Gs~e~i---~~~~~~l~-----~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~-~~ 137 (366)
T PRK01533 67 TTLRQTIANKLHVKMEQVLCGSGLDEVI---QIISRAVL-----KAGDNIVTAGATFPQYRHHAIIEGCEVKEVALN-NG 137 (366)
T ss_pred HHHHHHHHHHhCCCcceEEECCCHHHHH---HHHHHHhc-----CCCCEEEEcCCcHHHHHHHHHHcCCEEEEeecC-CC
Confidence 3677888999999887766665654 33 33333331 367899999887766777788999999999985 45
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHH--cCCEEEEEcccccccc--CCCC----CCccCC
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHD--NGGQVYMDGANMNAQV--GLTS----PGYIGA 784 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~--~galliVD~a~~~~~~--~l~~----pg~~g~ 784 (985)
.+|+++|+++++ +++++|++++| |++|.+. +.+++.++++. .+.++++|.++..-.. .... .....-
T Consensus 138 ~~d~~~l~~~~~---~~~~~v~i~~P~NPTG~~~-~~~~l~~l~~~~~~~~~~iiDe~y~~~~~~~~~~~~~~~~~~~~~ 213 (366)
T PRK01533 138 VYDLDEISSVVD---NDTKIVWICNPNNPTGTYV-NDRKLTQFIEGISENTLIVIDEAYYEYVTAKDFPETLPLLEKHKN 213 (366)
T ss_pred CcCHHHHHHHhC---cCCcEEEEeCCCCCCCCCc-CHHHHHHHHHhCCCCCEEEEEccHHHhhccccCcchhHHhccCCC
Confidence 699999999987 68899999999 4799997 66665555542 2347788998731110 0000 011122
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
-+++.|+.|+|++| |.++|++++++++.+.+.... ...+++ .....++.++|. .
T Consensus 214 vi~~~SfSK~~~l~----GlRiG~~i~~~~~~~~l~~~~--------------~~~~~~------~~~q~aa~~~l~--~ 267 (366)
T PRK01533 214 ILVLRTFSKAYGLA----SFRVGYAVGHEELIEKLNVVR--------------LPFNVS------SLAQKAATIAFG--D 267 (366)
T ss_pred EEEEeCchHHhcCh----HHHHhHHhCCHHHHHHHHHhc--------------CCCCcC------HHHHHHHHHHhC--C
Confidence 36778888888654 788999998876655442110 011121 111122223332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCC
Q 001989 865 SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPG 943 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~ 943 (985)
.+-+++..+...++.+++.+.|+. ++++ + .+.+. + +.+.++ +..++.+.|.++||.+..+ ++
T Consensus 268 ~~~~~~~~~~~~~~r~~~~~~l~~~g~~~-~-~~~~n-f--~~~~~~--------~~~~~~~~l~~~GI~Vr~~----~~ 330 (366)
T PRK01533 268 DEFIEEIVRVNTEGLRQYESFCKENEIPF-Y-QSQTN-F--IFLPVE--------NGGEIYEACAHAGFIIRPF----PN 330 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcc-C-CCcCc-E--EEEeCC--------CHHHHHHHHHHCCcEEccC----CC
Confidence 222334444455666677777765 4443 2 22222 2 334442 3578999999999998753 37
Q ss_pred EEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 944 TLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 944 ~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
++||++ .+.+|.++ ++++|+++++..|.
T Consensus 331 ~iRis~---~~~~~~~~--l~~al~~~~~~~~~ 358 (366)
T PRK01533 331 GVRITV---GTREQNEG--VISVLQQHFENKKR 358 (366)
T ss_pred ceEEeC---CCHHHHHH--HHHHHHHHHHhccc
Confidence 899998 88999999 88899988766543
No 293
>PRK06917 hypothetical protein; Provisional
Probab=99.67 E-value=2.3e-14 Score=167.91 Aligned_cols=340 Identities=16% Similarity=0.136 Sum_probs=205.5
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air~ 670 (985)
..||++++.+..+...+.... .+.....+.. +...++.+.|++++... ...++.+||++|++++++.+|.
T Consensus 43 ~~lGh~hp~v~~Ai~~ql~~~-~~~~~~~~~~--------~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~ 113 (447)
T PRK06917 43 AGIGHGVKEIADAIKEQAEEV-SFVYRSQFTS--------EPAEKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQ 113 (447)
T ss_pred ccCCCCCHHHHHHHHHHHhhC-cCccccccCC--------HHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHH
Confidence 458988888877655554221 1111001111 23447888888887543 2357789999999999999988
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------------EEEEEcCCCCC------------CCCHHHHHHHHH
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------------KIVSVGTDAKG------------NINIEELRKAAE 725 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------------~vv~v~~d~~g------------~iD~e~L~~~i~ 725 (985)
|...++.+++.+||. ...+||.+..+....|. .+..+|..... ..|++.+++.++
T Consensus 114 ~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~ 193 (447)
T PRK06917 114 HFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIE 193 (447)
T ss_pred HHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHH
Confidence 765556445667776 56799988766443221 12223221100 013567788887
Q ss_pred hcC-CCEEEEEEEcC-C-Ccccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEEEeCC
Q 001989 726 ANR-DNLSTLMVTYP-S-THGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNL 791 (985)
Q Consensus 726 ~~~-~~t~~Vvv~~p-n-~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~ 791 (985)
++. +++++|+++-. . .-|++.+ -+++|.++|+++|+++|+|+++. |+.++|.+ .+|+++++
T Consensus 194 ~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~t----GfGRtG~~~a~~~~gv~PDi~~~g- 268 (447)
T PRK06917 194 RIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMT----GLGRTGAMFAMEHWGVEPDIMTLG- 268 (447)
T ss_pred hcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhh----CcCcccchhhHHhcCCCCCEEEee-
Confidence 543 46888988752 2 2345432 38999999999999999998873 34455433 27998763
Q ss_pred cccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHH
Q 001989 792 HKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTE 870 (985)
Q Consensus 792 hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~ 870 (985)
|.++ +|- | +|.+.+++++.+.+.... + . ....+++.|+++.++++.+.|..+..+++.
T Consensus 269 -K~l~----~G~~P-i~a~~~~~~i~~~~~~~~-~------------~-~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~- 327 (447)
T PRK06917 269 -KGLG----AGYTP-IAATVVSDRVMEPILRGS-R------------S-IMSGHTLSANPLSAATALAVLEYMEKHNLP- 327 (447)
T ss_pred -ehhc----cCCcc-eEEEEEcHHHHHHHhccC-c------------c-cccccCCCCCHHHHHHHHHHHHHHHHCCHH-
Confidence 7763 332 5 455666766654432110 0 0 001124556778888888889888666543
Q ss_pred HHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEec--CccccCC----CCHHHHHHHHHHCCCccCCCCC
Q 001989 871 ASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLR--GLKNTAG----IEPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 871 ~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~--~~~~~~g----~~~~~v~~~L~~~Gi~~~~~~~ 939 (985)
++..++.++|++.|++. ++++ +.+. + .+ +.+.+. ....+.. .....+.+.|.++|+++.....
T Consensus 328 --~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~-G-l~--~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~ 401 (447)
T PRK06917 328 --EKAAEKGEYLIKGLQKVQQQSTIIGDVRGK-G-LL--IGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVA 401 (447)
T ss_pred --HHHHHHHHHHHHHHHHHHhcCCCEEEEeec-c-eE--EEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEeccc
Confidence 46667778888888652 3322 1121 1 22 222221 0000000 0145677888999998743210
Q ss_pred ----CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 940 ----PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 940 ----p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+..+.+|++|+..+|++|||+ +++++++++.++
T Consensus 402 ~~~g~~~~~i~l~Ppl~it~~eid~--~~~~l~~~l~~~ 438 (447)
T PRK06917 402 GQDGKEGDAVIIAPPMTITYSELDE--LLSIFAKSVEEM 438 (447)
T ss_pred ccCCCCCCEEEEECCCcCCHHHHHH--HHHHHHHHHHHH
Confidence 114799999999999999999 889999888765
No 294
>PRK08114 cystathionine beta-lyase; Provisional
Probab=99.67 E-value=4.7e-15 Score=169.47 Aligned_cols=211 Identities=14% Similarity=0.122 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
...+++.++++-|.+.+.+ +.||..|+.++++++. +++|+||+++..|+..... ++..|+++.+++.
T Consensus 64 ~~~le~~la~LEg~~~a~~-~~SGmaAi~~~~~~ll--------~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~ 134 (395)
T PRK08114 64 HFSLQEAMCELEGGAGCAL-YPCGAAAVANAILAFV--------EQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDP 134 (395)
T ss_pred HHHHHHHHHHHhCCCeEEE-EhHHHHHHHHHHHHHc--------CCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECC
Confidence 3468899999998876544 4568877755554432 4789999987766544333 3567999999885
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcC--CEEEEEccccccccCCCCCCccCCcE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNG--GQVYMDGANMNAQVGLTSPGYIGADV 786 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~g--alliVD~a~~~~~~~l~~pg~~g~Di 786 (985)
.|.++++++|+ ++|++|++++| |++|.+. ||++|+++||++| ++++||++++. +.+.+|.++|+|+
T Consensus 135 -----~d~~~l~~~l~---~~TrlV~~EtpsNp~~~v~-DI~~Ia~ia~~~g~g~~lvVDnT~a~--p~~~~pl~~GaDi 203 (395)
T PRK08114 135 -----LIGADIAKLIQ---PNTKVVFLESPGSITMEVH-DVPAIVAAVRSVNPDAVIMIDNTWAA--GVLFKALDFGIDI 203 (395)
T ss_pred -----CCHHHHHHhcC---CCceEEEEECCCCCCCEee-cHHHHHHHHHHhCCCCEEEEECCCcc--ccccCHHHcCCcE
Confidence 38899999998 89999999998 5789998 9999999999984 99999999854 3346899999999
Q ss_pred EEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
++.|+||+++.+ +.-++|+++.+++....+... ...++...+ ...+| |...|-+
T Consensus 204 vv~S~tKyl~Gh---sdv~~G~v~~~~~~~~~l~~~-------------~~~~G~~~~--------p~~a~--l~~rgl~ 257 (395)
T PRK08114 204 SIQAGTKYLVGH---SDAMIGTAVANARCWEQLREN-------------SYLMGQMVD--------ADTAY--MTSRGLR 257 (395)
T ss_pred EEEcCcccccCC---CcceeEEEEcCHHHHHHHHHH-------------HHhccCCCC--------HHHHH--HHHcCCC
Confidence 999999999522 112678777666543322100 001222221 12234 4445556
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Q 001989 867 GLTEASKIAILNANYMAKRLEKHY 890 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~g~ 890 (985)
-+.-++++..+++..+++.|++..
T Consensus 258 TL~lR~~~~~~na~~va~~L~~hp 281 (395)
T PRK08114 258 TLGVRLRQHEESSLKVAEWLAEHP 281 (395)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCC
Confidence 677788999999999999999743
No 295
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.67 E-value=2.1e-14 Score=168.07 Aligned_cols=312 Identities=13% Similarity=0.059 Sum_probs=183.0
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+.+.+++..-.|. +...+.. +++++|... +++.+. .++|+|+++++.+..+...+...|+++
T Consensus 94 ~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l---~~~~l~-----~~Gd~Vlv~~P~y~~y~~~~~~~g~~~ 165 (430)
T PLN00145 94 VGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEI---IMSVLA-----QPGANILLPRPGYPLYEARAVFSGLEV 165 (430)
T ss_pred ccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHH---HHHHhc-----CCCCEEEEcCCCCccHHHHHHHcCCEE
Confidence 56554444444444333333 3334444 444555533 333321 478899999987777777788899999
Q ss_pred EEEcCC--CCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEcccccc-ccC--C
Q 001989 705 VSVGTD--AKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNA-QVG--L 776 (985)
Q Consensus 705 v~v~~d--~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~-~~~--l 776 (985)
+.+++. .++.+|+++|+++++ ++++++++++|| ++|.+.+ .+++|+++|+++|+++++|+++..- ... +
T Consensus 166 ~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~ 242 (430)
T PLN00145 166 RHFDLLPERGWEVDLEGVEALAD---ENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPF 242 (430)
T ss_pred EEeeCCcccCCcCCHHHHHHHhC---cCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCc
Confidence 998864 347899999999987 789999999995 7999872 3889999999999999999987321 111 1
Q ss_pred CCCCcc---CCcEEEeCCcccccccCCCCCCceEEEEEc--ccccCcC--CCCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 777 TSPGYI---GADVCHLNLHKTFCIPHGGGGPGMGPIGVK--KHLAPFL--PSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 777 ~~pg~~---g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~--~~l~~~l--p~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
.....+ ..=+++.|+.|.|++| |+++|++++. +.+.... ...+ . .......+.+...+
T Consensus 243 ~~~~~~~~~~~vi~~~S~SK~~~~p----G~RlG~iv~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~~~~~Q 307 (430)
T PLN00145 243 VPMGVFGEVAPVLTLGSISKRWVVP----GWRLGWIATCDPNGILKETKVVDSI-R----------NYLNISTDPATFVQ 307 (430)
T ss_pred cchhhhcccCcEEEEeccccccCCC----CeeEEEEEEecchhhhhhhHHHHHH-H----------HHhcccCCCCHHHH
Confidence 111111 1226677888988765 7999999973 2222110 0000 0 00000111111111
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeee-cCCCCceeeEEEEEecCccccCCC-CHHHHHHHH
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILF-RGVNGTVAHEFIVDLRGLKNTAGI-EPEDVAKRL 927 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~-~~~~~~~~~~~iv~~~~~~~~~g~-~~~~v~~~L 927 (985)
. ++..+|..-..+-+++..++..++++++.+.|++...+.. ..+.+..+ +.++++.-. -.+. +..+++.+|
T Consensus 308 ~----a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~y--~~v~l~~~~-~~~~~~~~~~~~~l 380 (430)
T PLN00145 308 G----AIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMF--VMVKLDLSC-LSGIKDDMDFCCKL 380 (430)
T ss_pred H----HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCeeeE--EEeccChhh-cCCCCCHHHHHHHH
Confidence 1 1112232111234555566677788889999976322211 12223333 334443100 0012 456677666
Q ss_pred H-HCCCccCC-CCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 928 M-DYGFHGPT-MSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 928 ~-~~Gi~~~~-~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
. ++|+.+.. ..|..++++||++.. +.++++. .++.|++.+++.++
T Consensus 381 l~~~gV~v~pG~~fg~~~~lRis~~~--~~~~l~~--al~rl~~~~~~~~~ 427 (430)
T PLN00145 381 AKEESVVVLPGSALGMKNWLRITFAI--DPPSLED--GLERLKSFCLRHAK 427 (430)
T ss_pred HHhCCEEEeCccccCCCCeEEEEeCC--CHHHHHH--HHHHHHHHHHHhcc
Confidence 5 56887543 334456899999983 6788888 77888888877654
No 296
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=99.67 E-value=3.1e-14 Score=164.46 Aligned_cols=277 Identities=17% Similarity=0.197 Sum_probs=178.9
Q ss_pred HhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001989 205 IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 205 ~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~ 284 (985)
..+|......++++.+++++|.+ ...++.+|+.+..+++.++ .++||+|++++..|+++...++ ..|.+++
T Consensus 78 ~~~g~~~~~~~l~~~la~~~~~~--~~i~~~~g~~~~~~~l~~~---~~~gd~V~~~~~~~~~~~~~~~----~~g~~~~ 148 (385)
T PRK05958 78 LVTGNSPAHEALEEELAEWFGAE--RALLFSSGYAANLAVLTAL---AGKGDLIVSDKLNHASLIDGAR----LSRARVR 148 (385)
T ss_pred cccCCcHHHHHHHHHHHHHhCCC--cEEEECcHHHHHHHHHHHh---CCCCCEEEEeCccCHHHHHHHH----hcCCceE
Confidence 44555566778899999999954 3455666665555443332 2489999999999999988864 2466776
Q ss_pred EeC---chhhhc-cCC---CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCC----------CCc
Q 001989 285 VSD---LKDIDY-KSG---DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP----------PGE 346 (985)
Q Consensus 285 ~v~---~~~l~~-l~~---~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~----------~~~ 346 (985)
.++ .+++++ +++ +++++++.++ |.+|.+.|+++|+++||++|+++++| +..+.|.+.. ...
T Consensus 149 ~~~~~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~D-e~~~~g~~~~~g~~~~~~~~~~~ 227 (385)
T PRK05958 149 RYPHNDVDALEALLAKWRAGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVD-EAHGTGVLGPQGRGLAAEAGLAG 227 (385)
T ss_pred EeCCCCHHHHHHHHHhccCCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEE-CcccccccCCCCCchHHhhCCCC
Confidence 664 456666 543 3555665555 67899999999999999999999994 3344333211 111
Q ss_pred ccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhH
Q 001989 347 LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQA 425 (985)
Q Consensus 347 ~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~ 425 (985)
..-+|++++. |+|+. +| |++..++++.+.+-. . ..+ +.. + .-+++..
T Consensus 228 ~~~~i~~~s~sK~~~~------~G-g~~~~~~~~~~~~~~-------~--~~~-~~~-------------~--~~~~~~~ 275 (385)
T PRK05958 228 EPDVILVGTLGKALGS------SG-AAVLGSETLIDYLIN-------R--ARP-FIF-------------T--TALPPAQ 275 (385)
T ss_pred CCceEEEEechhhccc------CC-cEEEcCHHHHHHHHH-------h--Ccc-cee-------------c--CCCCHHH
Confidence 2234777776 87753 22 677777766554310 0 000 100 0 0011122
Q ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeee
Q 001989 426 LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVV 502 (985)
Q Consensus 426 l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~ 502 (985)
..+..+++ .++.. . +++.++..++.+++.+.|+++| +++.. +...-+.+..++ +.++.++|.++||.+...
T Consensus 276 ~aa~~aal--~~~~~-~-~~~~~~~~~~~~~l~~~L~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~ 349 (385)
T PRK05958 276 AAAARAAL--RILRR-E-PERRERLAALIARLRAGLRALG-FQLMD-SQSAIQPLIVGDNERALALAAALQEQGFWVGAI 349 (385)
T ss_pred HHHHHHHH--HHHhc-C-HHHHHHHHHHHHHHHHHHHHcC-CCcCC-CCCCEEEEEeCCHHHHHHHHHHHHHCCceEecc
Confidence 22222332 33322 2 5678889999999999999887 77653 222234455543 678999999999988542
Q ss_pred -----c--CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 -----D--SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -----~--~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. .+.+|++++.++|++|+|++++.|..
T Consensus 350 ~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~ 383 (385)
T PRK05958 350 RPPTVPAGTSRLRITLTAAHTEADIDRLLEALAE 383 (385)
T ss_pred cCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHh
Confidence 1 25799999999999999999999864
No 297
>PRK07550 hypothetical protein; Provisional
Probab=99.67 E-value=1.6e-14 Score=167.20 Aligned_cols=347 Identities=12% Similarity=0.092 Sum_probs=202.1
Q ss_pred HHHHHHHHHHhccccCcccccccccccccCCCccccccccccc--cccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC
Q 001989 571 HELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWP--SFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD 648 (985)
Q Consensus 571 ~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~--~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~ 648 (985)
.++.+.+.++++.+. +.+.|+.+.+.+.+.......... .......|.+ .+|..++.+.+.+++.+..|..
T Consensus 15 ~~~~~~~~~~~~~~~----~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~~lr~~ia~~~~~~~g~~ 87 (386)
T PRK07550 15 PEVRAWLAGYDGADG----PLIDLSQAVPGYPPPPELLRALAEAAADPAAHLYGP---VEGLPELREAYAAHYSRLYGAA 87 (386)
T ss_pred HHHHHHHHHHhhcCC----CeEEeCCCCCCCCCCHHHHHHHHHHHhCcCCcCCCC---CCCCHHHHHHHHHHHHHHhCCC
Confidence 566666766655442 356778766655433222221100 0011222333 3577677777777777766643
Q ss_pred --ccceecCcH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC--CCCCCHHHHHHH
Q 001989 649 --SFSLQPNAG-AAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA--KGNINIEELRKA 723 (985)
Q Consensus 649 --~~~~~~~sG-a~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~--~g~iD~e~L~~~ 723 (985)
...+..++| ++|...+ ++.+. .+||+|+++++.|..+...++..|++++.++.++ ++.+|+++++++
T Consensus 88 ~~~~~i~~t~G~~~al~~~---~~~l~-----~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~ 159 (386)
T PRK07550 88 ISPEQVHITSGCNQAFWAA---MVTLA-----GAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEAL 159 (386)
T ss_pred CCcceEEEecCcHHHHHHH---HHHhc-----CCCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHH
Confidence 334444445 4454333 32221 3788999999888777777888999999999964 356899999999
Q ss_pred HHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEccccccccCCCCC---C---ccCC-cEEEeCCcc
Q 001989 724 AEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQVGLTSP---G---YIGA-DVCHLNLHK 793 (985)
Q Consensus 724 i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~~~~l~~p---g---~~g~-Di~~~s~hK 793 (985)
++ +++++|++++|| ++|.+.+ ++++|+++|+++|+++++|+++..-......+ . ..+. .+++.|++|
T Consensus 160 ~~---~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 236 (386)
T PRK07550 160 IT---PRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSK 236 (386)
T ss_pred hc---ccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchh
Confidence 97 678888888985 7898752 48899999999999999999863111000011 0 1121 356788999
Q ss_pred cccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHH
Q 001989 794 TFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASK 873 (985)
Q Consensus 794 ~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~ 873 (985)
+|+.| |.++|++++++++...+.... . ....+.+..++. ++...+..+ .+-+++..+
T Consensus 237 ~~g~~----G~RiG~i~~~~~~~~~~~~~~-~-------------~~~~~~s~~~q~----~~~~~l~~~-~~~~~~~~~ 293 (386)
T PRK07550 237 SYALT----GHRVGAVVASPARIAEIEKFM-D-------------TVAICAPRIGQI----AVAWGLPNL-ADWRAGNRA 293 (386)
T ss_pred hccCc----ccceEeeecCHHHHHHHHHHH-h-------------hcccCCCcHHHH----HHHHHhccH-HHHHHHHHH
Confidence 88544 678999998876554332110 0 001111111121 111222211 222333444
Q ss_pred HHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCCCccCCC-CCC--CCCEEEEec
Q 001989 874 IAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYGFHGPTM-SWP--VPGTLMIEP 949 (985)
Q Consensus 874 ~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~Gi~~~~~-~~p--~~~~lris~ 949 (985)
...++++++.+.|.+...+...+ .+..+ +.+.++. .+.+..+++++|. ++||.+... .|. ..+++||++
T Consensus 294 ~~~~~~~~l~~~L~~~~~~~~~~-~g~~~--~~~~~~~----~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~ 366 (386)
T PRK07550 294 EIARRRDAFRAVFARLPGWELLA-SGAYF--AYVRHPF----PDRPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAF 366 (386)
T ss_pred HHHHHHHHHHHHHHhCCCceeCC-CceEE--EEecCCC----CCCCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEe
Confidence 56677788888887532222222 12222 3344431 1457889999875 579987532 121 247899999
Q ss_pred cCCCCHHHHHHHHccCChh
Q 001989 950 TESESKSWTGIVMLSSPSE 968 (985)
Q Consensus 950 t~~~t~eeId~~~~~~~l~ 968 (985)
+. .+.+++++ .++.|.
T Consensus 367 ~~-~~~~~~~~--~~~~l~ 382 (386)
T PRK07550 367 AN-ADVAGIGE--LVERLR 382 (386)
T ss_pred ec-CCHHHHHH--HHHHHH
Confidence 64 45888888 444443
No 298
>PRK06234 methionine gamma-lyase; Provisional
Probab=99.67 E-value=1.1e-14 Score=168.80 Aligned_cols=274 Identities=16% Similarity=0.153 Sum_probs=185.1
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|++.|.+. +.++.+|++++.++++++ . ++||+||++...|+++...+...++..|++++++|. ++
T Consensus 67 ~~Le~~iA~~~g~~~--~l~~~sG~~Ai~~al~~l-l--~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~ 141 (400)
T PRK06234 67 TEVENKLALLEGGEA--AVVAASGMGAISSSLWSA-L--KAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTSNLEE 141 (400)
T ss_pred HHHHHHHHHHhCCCc--EEEEcCHHHHHHHHHHHH-h--CCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCCCHHH
Confidence 357789999999764 678889998877766554 2 389999999999999888876666778999999876 45
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhC--CcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHAN--GVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~--galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
+++ ++++|++|++.+| |++|.+.|+++|+++||++ |++++|| +.++.+....+.++|+||+++|. |.++++
T Consensus 142 l~~~i~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livD-ea~~~~~~~~~l~~g~Divv~S~sK~l~g~--- 217 (400)
T PRK06234 142 VRNALKANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVD-NTFCTPYIQRPLQLGADVVVHSATKYLNGH--- 217 (400)
T ss_pred HHHHhccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEE-CCCCchhcCCchhhCCcEEEeeccccccCC---
Confidence 655 7889999999998 7899999999999999997 8999994 45555555566788999999998 777532
Q ss_pred CCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHH
Q 001989 366 GGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 366 GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~ 445 (985)
|...+|++++++++.+++- ..+ . +...| . +.+++ .+. +...+.+-+..
T Consensus 218 g~~~gG~v~~~~~~~~~l~--~~~-------~--------------~~~~g--~--~l~p~---~a~--l~~~~l~tl~~ 265 (400)
T PRK06234 218 GDVIAGFVVGKEEFINQVK--LFG-------I--------------KDMTG--S--VIGPF---EAF--LIIRGMKTLQI 265 (400)
T ss_pred CCceeEEEEecHHHHHHHH--HHH-------H--------------HHhcC--C--CCCHH---HHH--HHHhccCcHHH
Confidence 2233689999887766541 000 0 00001 0 01122 222 23444555667
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeE-EcCC-----C-----------CcceEEEecCC----HHHHHHHHHHcCce--ee--
Q 001989 446 IAQRVHGLAGTFALGLKKLGTVE-VQGL-----P-----------FFDTVKVKCAD----AHAIASAAYKIEMN--LR-- 500 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~-~~~~-----~-----------~~~~~~~~~~~----~~~v~~~L~~~GI~--~~-- 500 (985)
+.++..+++.++.+.|++...+. +..+ | +..-|+|.+++ +.++.+.|.-.++- +.
T Consensus 266 r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~~ 345 (400)
T PRK06234 266 RMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGVEEGKVVMNNVKLATLAVSLGDA 345 (400)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhCCcceEeccCCCC
Confidence 78888899999999999875343 2211 1 11246777754 44555555433321 10
Q ss_pred --e---------------------ecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 501 --V---------------------VDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 501 --~---------------------~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
. +.++.+|+|++.-+.++=|+.|.++|.
T Consensus 346 ~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGlE~~~dl~~dl~~al~ 396 (400)
T PRK06234 346 ETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVGLEDVDDIIADLKQALD 396 (400)
T ss_pred CceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeCCCCHHHHHHHHHHHHH
Confidence 0 113679999987665555566666654
No 299
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=99.67 E-value=6.7e-15 Score=172.36 Aligned_cols=294 Identities=15% Similarity=0.180 Sum_probs=175.3
Q ss_pred HHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHC--Cc---------
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMC--GM--------- 702 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~--G~--------- 702 (985)
.++.+.|++++......++.+||++|++++++++|.|. ++++||+ ...+||......... |.
T Consensus 91 ~~lae~l~~~~~~~~~v~~~~sGseA~e~Alk~ar~~~------gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~ 164 (423)
T TIGR00713 91 ILLAKEIISRVPSVEMVRFVNSGTEATMSAVRLARGYT------GRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSP 164 (423)
T ss_pred HHHHHHHHHhCCcccEEEEeCCHHHHHHHHHHHHHHhh------CCCEEEEEcCCCCCChhhhhccccCcccccCCCCCC
Confidence 46778888877543345678999999999999888762 3567776 556888654332211 10
Q ss_pred --------EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEE-cCCCccccccC---HHHHHHHHHHcCCEEEEEcccc
Q 001989 703 --------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVT-YPSTHGVYEEG---IDEICKIIHDNGGQVYMDGANM 770 (985)
Q Consensus 703 --------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~-~pn~~G~i~~d---i~eI~~la~~~galliVD~a~~ 770 (985)
.+..+|. .|+++|+++++++.+++++|+++ .++..|.+.++ +++|.++|+++|+++|+|+++.
T Consensus 165 ~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~ 239 (423)
T TIGR00713 165 GVPEDFAKLTLVLPY-----NDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMT 239 (423)
T ss_pred CCCcccccceEEeCC-----CCHHHHHHHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc
Confidence 1222332 38999999997554678888886 56667877632 8999999999999999999873
Q ss_pred cccc-C-CCCC--CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcc
Q 001989 771 NAQV-G-LTSP--GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAP 846 (985)
Q Consensus 771 ~~~~-~-l~~p--g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~ 846 (985)
++. + .... ....+|+++ +.|.+ + +|..+|++++++++.+.+... +. ....+++
T Consensus 240 -g~r~g~~~~~~~~~~~pDi~t--~sK~l----~-~G~pig~v~~~~~i~~~~~~~--~~-------------~~~~~T~ 296 (423)
T TIGR00713 240 -GFRVALGGAQEYFGVEPDLTT--LGKII----G-GGLPVGAFGGRREIMERLAPE--GP-------------VYQAGTL 296 (423)
T ss_pred -ccccCcchhHHHhCCCcchhh--hhhhh----c-CCCceeeeeEHHHHHHhhCcC--CC-------------eeeccCC
Confidence 221 0 0000 012357664 34766 3 456688999998877655311 00 0011123
Q ss_pred hhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhh----c-cCCeeecCCCCceeeEEEEEecCccc---cCCC
Q 001989 847 WGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLE----K-HYPILFRGVNGTVAHEFIVDLRGLKN---TAGI 918 (985)
Q Consensus 847 ~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~----~-g~~l~~~~~~~~~~~~~iv~~~~~~~---~~g~ 918 (985)
.+++..++++.+.|..+..+++.+ +..++.+++++.|. + ++.....+. +..+ .+.+..+...+ ....
T Consensus 297 ~~~~~~~aaa~a~l~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~v~~~-g~~~-~v~~~~~~~~~~~~~~~~ 371 (423)
T TIGR00713 297 SGNPLAMAAGLATLKLLDEEGVYT---ELDELAKRLAEGLSEVLEDTGIPHTVNRV-GSMF-SLFFTEEEVTNYADAKKS 371 (423)
T ss_pred CCCHHHHHHHHHHHHHHhcccHHH---HHHHHHHHHHHHHHHHHHhcCCCeEEEee-ccEE-EEEEecCCCCChhhhhcc
Confidence 345666677777787775544333 33444455555543 3 222211221 2222 12222110000 0001
Q ss_pred C---HHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 919 E---PEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 919 ~---~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+ ...+.+.|.++|+.+....+ +.+|+++. +|++||++ +++.|++++.++
T Consensus 372 ~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~l~~~--~t~~~i~~--~~~~l~~~l~~~ 423 (423)
T TIGR00713 372 DTELFAKFFHEMLDKGVFLPPSQF---EACFLSAA--HTEEDIEN--TIEAAEEVFAEL 423 (423)
T ss_pred cHHHHHHHHHHHHHCCeEEecCCc---cceeeECC--CCHHHHHH--HHHHHHHHHhhC
Confidence 1 23688889999998754332 46788876 79999999 778888887653
No 300
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=99.67 E-value=1.2e-14 Score=169.67 Aligned_cols=296 Identities=15% Similarity=0.180 Sum_probs=185.6
Q ss_pred HHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc----------
Q 001989 635 NNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM---------- 702 (985)
Q Consensus 635 ~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~---------- 702 (985)
.++.++++++++.+. ..++.+||++|++++++.+|.|...+|..++.+||. ...+||....+....|-
T Consensus 91 ~~la~~l~~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~ 170 (427)
T TIGR00508 91 IELCQKLVKMTPNALDCVFLADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKG 170 (427)
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccc
Confidence 467778888875432 356778999999999999988754444333456665 77899976544332221
Q ss_pred ---EEEEEcCCCC-C-----CCCHHHHHHHHHhcCCCEEEEEEEcC-C-Cccccc---cCHHHHHHHHHHcCCEEEEEcc
Q 001989 703 ---KIVSVGTDAK-G-----NINIEELRKAAEANRDNLSTLMVTYP-S-THGVYE---EGIDEICKIIHDNGGQVYMDGA 768 (985)
Q Consensus 703 ---~vv~v~~d~~-g-----~iD~e~L~~~i~~~~~~t~~Vvv~~p-n-~~G~i~---~di~eI~~la~~~galliVD~a 768 (985)
.+..+|.... . ..|++++++++.++.+++++|+++.. . .-|.+. .++++|.++|+++|+++|+|++
T Consensus 171 ~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv 250 (427)
T TIGR00508 171 YLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEI 250 (427)
T ss_pred cCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 1112222110 0 12577888888765567888888752 3 334332 2699999999999999999999
Q ss_pred ccccccCCCCCCc--------cCCcEEEeCCcccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCC
Q 001989 769 NMNAQVGLTSPGY--------IGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPL 839 (985)
Q Consensus 769 ~~~~~~~l~~pg~--------~g~Di~~~s~hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~ 839 (985)
|. ++ .+.|. ..+|++++ .|.|+ || .-++.++.++++.+.+.....+ ..
T Consensus 251 ~t-G~---Gr~G~~~~~~~~~v~pDi~~~--gK~l~-----gG~~p~~a~~~~~~~~~~~~~~~~~------------~~ 307 (427)
T TIGR00508 251 AT-GF---GRTGKLFACEHAGVVPDILCV--GKALT-----GGYMTLSATVTTDKVAQTISSGEAG------------CF 307 (427)
T ss_pred cc-CC---CcCCccchhhhcCCCCCEEEe--chhhh-----cCcccceEEEEcHHHHHHHhcCCCC------------cc
Confidence 72 33 23332 24788875 48773 44 3456666676665544311000 00
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc--CCee--ecCCCCceeeEEEEEecCcccc
Q 001989 840 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLRGLKNT 915 (985)
Q Consensus 840 ~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g--~~l~--~~~~~~~~~~~~iv~~~~~~~~ 915 (985)
...+++.|++..++++.+.|..+..+.+ .++..++.++|+++|++. .... ..+. + .+ +.+.+..
T Consensus 308 -~~~~T~~g~p~~~aaa~a~l~~l~~~~~---~~~~~~~~~~l~~~L~~l~~~~~i~~vrg~-G-~~--~~i~~~~---- 375 (427)
T TIGR00508 308 -MHGPTFMGNPLACAVAEASLAILLEGEW---QKQVSAIENQLKRELSPLRKNPVVKDVRVL-G-AI--GVVEMYK---- 375 (427)
T ss_pred -ccCCCCCcCHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHhhcCCCEEeEecc-c-cE--EEEEECC----
Confidence 0112344567777778888888765543 456778889999988762 1111 1111 1 12 2233321
Q ss_pred CCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 916 AGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 916 ~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
......+.++|.++|+++... .+.+|++|+..+|++|||+ +++++++++.
T Consensus 376 -~~~~~~~~~~l~~~Gv~~~~~----~~~l~~~ppl~~t~~~id~--~~~~l~~~l~ 425 (427)
T TIGR00508 376 -PVNVEELQKKFVEQGVWIRPF----GKLIYVMPPYIITTEQLQK--LTAALIEALH 425 (427)
T ss_pred -ccCHHHHHHHHHHCCeEEEec----CCEEEEECCCCCCHHHHHH--HHHHHHHHHh
Confidence 234678999999999998543 2589999999999999999 7788888774
No 301
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=99.67 E-value=1.3e-14 Score=167.91 Aligned_cols=212 Identities=20% Similarity=0.219 Sum_probs=151.6
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|+++|++.+. .+.+|++++.+++++. + ++||+|+++...|+++...++..++..|++++.++. ++
T Consensus 68 ~~Le~~lA~l~G~~~~~--~~~sG~~Ai~~~l~~~-l--~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~d~e~ 142 (398)
T PRK07504 68 DMFEKRMCALEGAEDAR--ATASGMAAVTAAILCQ-V--KAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDGLDLDN 142 (398)
T ss_pred HHHHHHHHHHhCCCeee--EecCHHHHHHHHHHHH-h--CCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECCCCHHH
Confidence 45779999999998743 4668887766555443 2 389999999999999888877666678999998764 55
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++.+| |++|.+.|+++|.++||++|++++|| +.++.+....|.++|+|+++.|. |+|+++ |.
T Consensus 143 l~~ai~~~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD-~a~a~~~~~~~~~~gaDivv~S~sK~l~g~---g~ 218 (398)
T PRK07504 143 WEKAVRPNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVD-NVFATPLFQKPLELGAHIVVYSATKHIDGQ---GR 218 (398)
T ss_pred HHHhcCcCceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEE-CCccccccCCchhhCCCEEEeeccccccCC---cc
Confidence 666 7889999999998 78999999999999999999999994 45566666677889999999998 877542 21
Q ss_pred CcEEEEEEchhhHhc-CCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 368 PHAAFLATSQEYKRM-MPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 368 P~~G~l~~~~~~~~~-lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
.-+|++..+++.+.+ +. ...+..|. +.++. .|+ +...+.+-+..+
T Consensus 219 ~~GG~vv~~~~~i~~~~~-------------------------~~~~~~g~----~~s~~---~A~--~~l~~L~tl~~R 264 (398)
T PRK07504 219 CLGGVVLSDKAWIEEHLQ-------------------------DYFRHTGP----SLSPF---NAW--TLLKGLETLPVR 264 (398)
T ss_pred ceEEEEEeCcHHHHHHHH-------------------------HHHHHhCC----CCCHH---HHH--HHHhccchHHHH
Confidence 224677666654421 10 00011110 01111 222 234455667778
Q ss_pred HHHHHHHHHHHHHHHhcCCCeE
Q 001989 447 AQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
.++..+++.++.+.|++..+++
T Consensus 265 ~~~~~~na~~la~~L~~~p~v~ 286 (398)
T PRK07504 265 VRQQTESAAAIADFLAGHPKVA 286 (398)
T ss_pred HHHHHHHHHHHHHHHHcCCCcc
Confidence 8888899999999999874454
No 302
>PRK09028 cystathionine beta-lyase; Provisional
Probab=99.66 E-value=1.1e-14 Score=166.84 Aligned_cols=216 Identities=16% Similarity=0.096 Sum_probs=150.3
Q ss_pred HHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGTD 710 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~d 710 (985)
.++++.++++.|.+.+ +.+.||+.|+.++++++. ++||+||+++..|+..... ....|+++..++.+
T Consensus 64 ~~Le~~iA~le~~~~~-~~~~sG~~Ai~~~l~all--------~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~ 134 (394)
T PRK09028 64 FAFQAAIVELEGGAGT-ALYPSGAAAISNALLSFL--------KAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPM 134 (394)
T ss_pred HHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCC
Confidence 4688899999887654 455678777755555442 4789999988766544332 34578898887753
Q ss_pred CCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEe
Q 001989 711 AKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHL 789 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~ 789 (985)
|.++++++++ ++|++|++++| |++|.+. |+++|+++||++|++++||.++.. +...+|.++|+|+++.
T Consensus 135 -----~~e~l~~~l~---~~TklV~lespsNPtg~v~-dl~~I~~la~~~g~~lvvD~t~a~--p~~~~Pl~~GaDivv~ 203 (394)
T PRK09028 135 -----IGEGIRELIR---PNTKVLFLESPGSITMEVQ-DVPTLSRIAHEHDIVVMLDNTWAS--PINSRPFEMGVDISIQ 203 (394)
T ss_pred -----CHHHHHHhcC---cCceEEEEECCCCCCCcHH-HHHHHHHHHHHcCCEEEEECCccc--cccCCccccCceEEEE
Confidence 6788999887 88999999999 5789887 899999999999999999999853 3346788999999999
Q ss_pred CCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHH
Q 001989 790 NLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 790 s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~ 869 (985)
|+|||++.+ +.--+|+++.++++.+.+.... ..++...+ + ..+| +...|-+.+.
T Consensus 204 S~tK~l~Gh---~d~~~G~~~~~~~~~~~l~~~~-------------~~~G~~~~-----p---~~a~--l~~rgl~TL~ 257 (394)
T PRK09028 204 AATKYIVGH---SDVMLGTATANEKHWDQLREHS-------------YLMGQCTS-----P---DDVY--LAMRGLRTLG 257 (394)
T ss_pred eCCeEecCC---CCEEEEEEECCHHHHHHHHHHH-------------HhcCCCCC-----H---HHHH--HHHcccCcHH
Confidence 999999521 1123666665554433221100 01122221 1 1234 4445666677
Q ss_pred HHHHHHHHHHHHHHHHhhccC---CeeecC
Q 001989 870 EASKIAILNANYMAKRLEKHY---PILFRG 896 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~g~---~l~~~~ 896 (985)
-++++..+++..+++.|++.. .+.|++
T Consensus 258 lR~~~~~~na~~la~~L~~~p~v~~V~yPg 287 (394)
T PRK09028 258 VRLAQHEKNALKVANWLATRPEVDHVRHPA 287 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccEEECCC
Confidence 888999999999999998743 345543
No 303
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=99.66 E-value=1.4e-14 Score=169.18 Aligned_cols=378 Identities=14% Similarity=0.119 Sum_probs=219.7
Q ss_pred CCHHHHHHHHHHHhccccCcccccccccccccCCCccccccccc-cccccc-cCCCCchhhhhhHHHHHHHHHHHHHHHh
Q 001989 568 HTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVT-WPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTIT 645 (985)
Q Consensus 568 ~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~-~~~f~~-~~p~~p~e~~~G~~~~~~e~~~~la~l~ 645 (985)
+.|.++++.+-++.+.-..+++.+-+|+.|.++++......+.. ...... ...+ ....| ....++++.+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~a~~~~~~~~---~~~~G--~~~~~fe~~lA~~~ 76 (438)
T PRK15407 2 MTEEELRQQILELVREYAELAHAPKPFVPGKSPIPPSGKVIDAKELQNLVDASLDF---WLTTG--RFNDAFEKKLAEFL 76 (438)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCcCccCCCHHHHHHHHHHHHhC---cccCC--hhHHHHHHHHHHHh
Confidence 46788888888887776666666666776666554432222210 000000 0000 00112 12568899999999
Q ss_pred CCCccceecCcHHHHHHHHHHHHHHH-HHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-CCCCCHHHHHHH
Q 001989 646 GFDSFSLQPNAGAAGEYAGLMVIRAY-HKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA-KGNINIEELRKA 723 (985)
Q Consensus 646 G~~~~~~~~~sGa~a~~a~l~air~~-~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~-~g~iD~e~L~~~ 723 (985)
|.+. .+.++||++|...++.++... ....+..+|++||++...|..+.......|++++.++++. ++.+|+++++++
T Consensus 77 g~~~-~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd~~~~~id~~~le~~ 155 (438)
T PRK15407 77 GVRY-ALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVELPTYNIDASLLEAA 155 (438)
T ss_pred CCCe-EEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHH
Confidence 9875 356778888776666544210 0011235789999999878777777778899999999874 588999999999
Q ss_pred HHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-CCCccCCcEEEeCCcccccccCCCC
Q 001989 724 AEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-SPGYIGADVCHLNLHKTFCIPHGGG 802 (985)
Q Consensus 724 i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-~pg~~g~Di~~~s~hK~l~~p~g~G 802 (985)
++ ++|++|+++++ .|... |+++|.++|+++|++|++|++|+.+...-. ..|.+| |+.++|+|..-.+ . .
T Consensus 156 i~---~~tkaVi~~~~--~G~p~-dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~g-d~~~fSf~~~k~~--~-~ 225 (438)
T PRK15407 156 VS---PKTKAIMIAHT--LGNPF-DLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTFG-DIATLSFYPAHHI--T-M 225 (438)
T ss_pred cC---cCCeEEEEeCC--CCChh-hHHHHHHHHHHCCCEEEEECccchhhhcCCeeeeccC-ceEEEeCCCCCCc--c-c
Confidence 97 78999999874 56666 899999999999999999999965432211 245665 9999998764322 2 2
Q ss_pred CCceEEEEEccc-ccCcCCC-CccccCC------CC------------CCCCCC--CCCCCCCCcchhhhHHHHHHHHHH
Q 001989 803 GPGMGPIGVKKH-LAPFLPS-HPVVSTG------GI------------PAPEKS--QPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 803 GPg~G~i~~~~~-l~~~lp~-~~~g~~~------~~------------~~~~~~--~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
|.| |+++++++ +.+.+.. +..|... +. ..+... .....+..++--+-..++.+..-|
T Consensus 226 geG-G~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL 304 (438)
T PRK15407 226 GEG-GAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQL 304 (438)
T ss_pred cCc-eEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccccccCccHHHHHHHHHHH
Confidence 444 78888753 3322110 0011100 00 000000 000000000000112222222222
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhhccCC-eeec--CCC-CceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC
Q 001989 861 AMMGSKGLTEASKIAILNANYMAKRLEKHYP-ILFR--GVN-GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT 936 (985)
Q Consensus 861 ~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~-l~~~--~~~-~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~ 936 (985)
+.+.+..++..++++++.+.|.+..+ +..+ .+. .+.++.+.+.+.. ..+.+.+++.+.|.++||.+..
T Consensus 305 -----~~l~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~Rd~l~~~L~~~GI~~~~ 376 (438)
T PRK15407 305 -----EKLPGFIEARKANFAYLKEGLASLEDFLILPEATPNSDPSWFGFPITVKE---DAGFTRVELVKYLEENKIGTRL 376 (438)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEEEEEEEECC---cCCCCHHHHHHHHHHCCCCccc
Confidence 34555566677788888888875221 2111 111 1333445555431 1135678999999999996531
Q ss_pred -----CC---------------CC-----CCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 937 -----MS---------------WP-----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 937 -----~~---------------~p-----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
+. +| ....|.+-+...-|++|+++ .+++++++++
T Consensus 377 ~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~~~v~~--i~~~i~~~~~ 435 (438)
T PRK15407 377 LFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTEEMLDY--VIEKIEEFFG 435 (438)
T ss_pred cCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCHHHHHH--HHHHHHHHHh
Confidence 11 11 01335554555679999999 7888888764
No 304
>PRK08960 hypothetical protein; Provisional
Probab=99.66 E-value=2e-14 Score=166.45 Aligned_cols=299 Identities=10% Similarity=0.061 Sum_probs=177.9
Q ss_pred hhHHHHHHHHHHHHHHHhCC--CccceecCcH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFSLQPNAG-AAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~~~~~sG-a~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+.+.+++.+.+|. +...+..++| ++|.. .+++.+. .++|+|+++++.|..+...+...|.++
T Consensus 69 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~---~~~~~~~-----~~gd~vlv~~p~y~~~~~~~~~~g~~~ 140 (387)
T PRK08960 69 RGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALL---LASSLLV-----DPGKHWLLADPGYPCNRHFLRLVEGAA 140 (387)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHH---HHHHHhc-----CCCCEEEEcCCCCcchHHHHHhcCCeE
Confidence 56555555555555555454 3444544444 44543 2333321 478999999998888888888889999
Q ss_pred EEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC-CC
Q 001989 705 VSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG-LT 777 (985)
Q Consensus 705 v~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~-l~ 777 (985)
+.+|++.+ +.+|+++++++++ ++++++++++| |++|.+. .++++|+++|+++|+++++|+++..-. .. ..
T Consensus 141 ~~v~~~~~~~~~~d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~ 217 (387)
T PRK08960 141 QLVPVGPDSRYQLTPALVERHWN---ADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAA 217 (387)
T ss_pred EEEecCcccCCCCCHHHHHHHhC---ccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC
Confidence 99998654 4799999999887 77888999999 5799986 146778888999999999999863111 10 00
Q ss_pred CCCccCCc-EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHH
Q 001989 778 SPGYIGAD-VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 778 ~pg~~g~D-i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a 856 (985)
.......+ +++.|++|.|+.| |.++|++++++++.+.+.... .....+.+...+. ++
T Consensus 218 ~~~~~~~~vi~~~S~SK~~g~~----GlRiG~~~~~~~~~~~~~~~~--------------~~~~~~~s~~~q~----a~ 275 (387)
T PRK08960 218 SVLEVDDDAFVLNSFSKYFGMT----GWRLGWLVAPPAAVPELEKLA--------------QNLYISASTPAQH----AA 275 (387)
T ss_pred ChhhccCCEEEEeecccccCCc----ccEEEEEEcCHHHHHHHHHHH--------------hhhccCCCHHHHH----HH
Confidence 11112223 5677888988543 677999999877654432100 0001111111121 12
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCCCcc
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYGFHG 934 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~Gi~~ 934 (985)
.+.+..-..+-+.+..+...++.+.+.+.|++ ++.+.. .+.+..+ +.++++. .+.+..+++++|. ++||.+
T Consensus 276 ~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~-~p~g~~f--~~~~~~~----~~~~~~~~~~~ll~~~gi~v 348 (387)
T PRK08960 276 LACFEPETLAILEARRAEFARRRDFLLPALRELGFGIAV-EPQGAFY--LYADISA----FGGDAFAFCRHFLETEHVAF 348 (387)
T ss_pred HHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCc-CCCeeEE--EEEeccc----cCCCHHHHHHHHHHhCCEEE
Confidence 22222111233444445566677888888876 333211 1222222 3455541 1246788988875 579987
Q ss_pred CCC-CCC---CCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 935 PTM-SWP---VPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 935 ~~~-~~p---~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
... .|. ..+++||+++. +.+++.. .++.|++.
T Consensus 349 ~pg~~f~~~~~~~~iRi~~~~--~~~~l~~--al~~l~~~ 384 (387)
T PRK08960 349 TPGLDFGRHQAGQHVRFAYTQ--SLPRLQE--AVERIARG 384 (387)
T ss_pred cCchHhCCCCCCCeEEEEecC--CHHHHHH--HHHHHHHH
Confidence 532 221 24689999985 4566666 44444443
No 305
>PRK13578 ornithine decarboxylase; Provisional
Probab=99.66 E-value=7.2e-15 Score=176.24 Aligned_cols=308 Identities=11% Similarity=0.044 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH-HHHCCcEEEEEcCCCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT-AAMCGMKIVSVGTDAK 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~-a~~~G~~vv~v~~d~~ 712 (985)
+.|.|+.+|++||.+...|..|++|+|+.++++++. .++|+||++++.|-+.... ..+.|++.++++...+
T Consensus 176 i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~--------~~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~n 247 (720)
T PRK13578 176 AKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALL--------TPGDLVLFDRNNHKSNHHGALIQAGATPVYLETARN 247 (720)
T ss_pred HHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhc--------CCCCEEEeecccHHHHHHHHHHHcCCeEEEeecccc
Confidence 778999999999999988888988888887777653 4789999999999887775 7899999999976442
Q ss_pred -----CCCCHHH-----HHHHHHhcCCC-------EEEEEEEcCCCccccccCHHHHHHH-HHHcCCEEEEEcccccccc
Q 001989 713 -----GNINIEE-----LRKAAEANRDN-------LSTLMVTYPSTHGVYEEGIDEICKI-IHDNGGQVYMDGANMNAQV 774 (985)
Q Consensus 713 -----g~iD~e~-----L~~~i~~~~~~-------t~~Vvv~~pn~~G~i~~di~eI~~l-a~~~galliVD~a~~~~~~ 774 (985)
|.++.+. ++++|.++.++ .+++++++|++.|++. |+++|+++ +|.++ .++||+||. ++.
T Consensus 248 ~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTYdG~~y-di~~I~~~~~h~~~-~llvDEAhg-ah~ 324 (720)
T PRK13578 248 PFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYDGTIY-NARQVVDKIGHLCD-YILFDSAWV-GYE 324 (720)
T ss_pred ccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCCcceee-cHHHHHHHhhccCC-cEEEeCcch-hhh
Confidence 4567555 99999865222 6899999999999999 99999998 68888 999999983 232
Q ss_pred CCCC--------CCccCCc----EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCC
Q 001989 775 GLTS--------PGYIGAD----VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTI 842 (985)
Q Consensus 775 ~l~~--------pg~~g~D----i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i 842 (985)
.|.. ..+.|+| +++.|.||+++. --...+|-++....+.- .+.+ +..+..........
T Consensus 325 ~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~a-----lTQaS~LHvk~~~i~g~-~~~v----~~~r~~~al~m~qS 394 (720)
T PRK13578 325 QFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAG-----FSQTSQIHKKDNHIKGQ-ARYC----PHKRLNNAFMLHAS 394 (720)
T ss_pred ccCcccccCChhhhhcCCCCCCeEEEEChhhcchh-----hhhHhhhhcCCcccccc-cccC----CHHHHHHHHHHHcC
Confidence 2211 1356899 999999999852 11344554443221100 0000 00000000000001
Q ss_pred CCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-hc--cCCeeec------------------------
Q 001989 843 AAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRL-EK--HYPILFR------------------------ 895 (985)
Q Consensus 843 ~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L-~~--g~~l~~~------------------------ 895 (985)
.|..|...+.+-.|...+.. ..| ++..++..+.+..++++| +. ++++..+
T Consensus 395 TSPsY~LmASLDva~~~m~~--~~G-~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~w~ 471 (720)
T PRK13578 395 TSPFYPLFAALDVNAKMHEG--ESG-RRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFS 471 (720)
T ss_pred CChHHHHHHHHHHHHHHHHH--hhC-HHHHHHHHHHHHHHHHHHHHhCCCeeecccccccccccccCchhhhcccccccc
Confidence 12223333333333333332 223 234455666677777776 32 3333210
Q ss_pred ---CCC--------------CceeeEEEEEecCcc------ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCC
Q 001989 896 ---GVN--------------GTVAHEFIVDLRGLK------NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTES 952 (985)
Q Consensus 896 ---~~~--------------~~~~~~~iv~~~~~~------~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~ 952 (985)
+.. ++. -+.+..+++. .+.|+.+..+.+.|.++||.+-... ...+.+-++..
T Consensus 472 ~~p~~~whgf~~~~~~~~~lDP~--KltI~t~G~~~~~G~~~~~Gipg~~l~~~L~e~gI~~E~~d---~~~vL~l~s~g 546 (720)
T PRK13578 472 FEPGEKWHGFEGYAEDQYFVDPC--KLLLTTPGIDAETGEYEDFGIPATILANYLRENGIVPEKCD---LNSILFLLTPA 546 (720)
T ss_pred cccCccccccccccccccccCCc--eEEEEcCCcCcccccccccCccHHHHHHHHHHcCCEEEecC---CCeEEEEeCCC
Confidence 000 111 1223333221 1224558899999988899875433 36788888889
Q ss_pred CCHHHHHHHHccCChhHHHH
Q 001989 953 ESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 953 ~t~eeId~~~~~~~l~~~~~ 972 (985)
+|++++++ +++.|.++.+
T Consensus 547 ~t~~~~~~--Lv~aL~~f~~ 564 (720)
T PRK13578 547 EDMAKLQQ--LVAMLARFEK 564 (720)
T ss_pred CCHHHHHH--HHHHHHHHHH
Confidence 99999999 6667776644
No 306
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=99.66 E-value=9.5e-15 Score=167.35 Aligned_cols=280 Identities=13% Similarity=0.102 Sum_probs=180.9
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++.++++++.+...+..++|++ +. ..+++.+. .++++|+++++.++.+...+...|++++.+|.+ ++
T Consensus 67 ~~lr~~ia~~~~~~~~~i~~t~G~~~~l---~~~~~~~~-----~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~-~~ 137 (359)
T PRK03158 67 PELRTKVAKHLGVDEEQLLFGAGLDEVI---QMISRALL-----NPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK-DG 137 (359)
T ss_pred HHHHHHHHHHhCCCHHHEEECCCHHHHH---HHHHHHHh-----CCCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC-CC
Confidence 4677888999998776665555554 33 23333332 367899998876665556677889999999986 67
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHH--cCCEEEEEccccccc-cCC-CCC----CccCC
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHD--NGGQVYMDGANMNAQ-VGL-TSP----GYIGA 784 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~--~galliVD~a~~~~~-~~l-~~p----g~~g~ 784 (985)
.+|+++++++++ +++++|++++| |++|.+. +.++|.++++. +|+++++|+++.... .+. ..+ ...+-
T Consensus 138 ~~d~~~l~~~~~---~~~~~v~i~~p~NPtG~~~-~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 213 (359)
T PRK03158 138 GHDLEAMLKAID---EQTKIVWICNPNNPTGTYV-NHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYEN 213 (359)
T ss_pred CcCHHHHHHhcC---CCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCC
Confidence 899999999887 78889999999 5799998 78999998887 599999999974211 110 000 12234
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
.+++.|+.|+|+.| |.++|++++++++.+.+... + .+.+++ .....++.+++. .
T Consensus 214 vi~~~S~SK~~g~~----GlRiG~~v~~~~~~~~~~~~------------~--~~~~~~------~~~q~~~~~~l~--~ 267 (359)
T PRK03158 214 LIVLRTFSKAYGLA----ALRVGYGIASEELIEKLNIA------------R--PPFNTT------RIAQYAAIAALE--D 267 (359)
T ss_pred EEEEEechHhhcCc----chhhehhcCCHHHHHHHHHh------------c--CCCCCC------HHHHHHHHHHhc--C
Confidence 57778888988543 67789999887665443211 0 011111 122222333332 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-CCCCC
Q 001989 865 SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-SWPVP 942 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~p~~ 942 (985)
.+-+++..+...++.+++.+.|++ ++.+ . ++.+. + +.+.++ .+..++.+.|.++||.+... .+..+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~g~-~--i~~~~~-------~~~~~~~~~l~~~gv~v~~g~~f~~~ 335 (359)
T PRK03158 268 QAFLKECVEKNAEGLEQYYAFCKEYGLFY-Y-PSQTN-F--IFVDTG-------RDANELFEALLKKGYIVRSGAALGFP 335 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCee-C-CCcCc-E--EEEECC-------CCHHHHHHHHHHCCeEEeeCCCCCCC
Confidence 222344444456667777787876 3333 2 22222 2 234432 35788999999999987542 23345
Q ss_pred CEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 943 GTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 943 ~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
+++||++ .+.+|+++ ++++|+++
T Consensus 336 ~~iRi~~---~~~~~~~~--l~~al~~~ 358 (359)
T PRK03158 336 TGVRITI---GLKEQNDK--IIELLKEL 358 (359)
T ss_pred CeEEEec---CCHHHHHH--HHHHHHHh
Confidence 8999997 58999999 66777654
No 307
>PRK05942 aspartate aminotransferase; Provisional
Probab=99.66 E-value=1.9e-14 Score=167.00 Aligned_cols=281 Identities=16% Similarity=0.161 Sum_probs=173.5
Q ss_pred hhhHHHHHHHHHHHHHHHhCCC--cc-ceecCcH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCc
Q 001989 627 AQGYQEMFNNLGEWLCTITGFD--SF-SLQPNAG-AAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGM 702 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~--~~-~~~~~sG-a~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~ 702 (985)
.+|..++.+.+.+++.+.+|.+ .. .+..++| ++|... +++.+. .++|+|+++++.|+.+...+...|+
T Consensus 72 ~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~---~~~~~~-----~~gd~Vlv~~P~y~~~~~~~~~~g~ 143 (394)
T PRK05942 72 FEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTH---LALAYV-----NPGDVVLVPSPAYPAHFRGPLIAGA 143 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHH---HHHHhC-----CCCCEEEEcCCCCcchHHHHHHcCC
Confidence 3676666666667776666743 33 3544444 445433 233321 4789999999888777767788999
Q ss_pred EEEEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-c--
Q 001989 703 KIVSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-V-- 774 (985)
Q Consensus 703 ~vv~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~-- 774 (985)
+++.+|++.+ +.+|+++++++++ +++++|++++| |++|.+.+ ++++|.++|+++|+++++|+++.... .
T Consensus 144 ~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~ 220 (394)
T PRK05942 144 QIYPIILKPENDWLIDLSSIPEEVA---QQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGY 220 (394)
T ss_pred EEEEeecCCccCCccCHHHHHHhcc---ccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCC
Confidence 9999998643 5699999999987 78999999998 57999861 38899999999999999999863211 0
Q ss_pred ---CCC-CCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhh
Q 001989 775 ---GLT-SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 775 ---~l~-~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~ 850 (985)
.+. .++.....+.+.|+.|.|+. .|.++|++++++++.+.+.... .....++.+ ..+
T Consensus 221 ~~~~~~~~~~~~~~~i~~~SfSK~~~~----~GlRiG~i~~~~~l~~~l~~~~------------~~~~~~~~~--~~q- 281 (394)
T PRK05942 221 QPTSLLEIPGAKDIGVEFHTLSKTYNM----AGWRVGFVVGNRHIIQGLRTLK------------TNLDYGIFS--ALQ- 281 (394)
T ss_pred CCCChhhCCCccccEEEEecchhccCC----hhhheeeeecCHHHHHHHHHHH------------hhcccCCCH--HHH-
Confidence 110 01111234667888898854 3678999998877665442110 000001111 001
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH-H
Q 001989 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL-M 928 (985)
Q Consensus 851 ~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L-~ 928 (985)
.++..++. ...+.+++..++..++.+++.+.|++ ++.+ ..+.+..+ +.++++ .+.+..+++.++ .
T Consensus 282 ---~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~--~~~~~~~f--~~~~~~-----~~~~~~~~~~~~l~ 348 (394)
T PRK05942 282 ---KAAETALQ-LPDSYLQQVQERYRTRRDFLIQGLGELGWNI--PPTKATMY--LWVPCP-----VGMGSTDFALNVLQ 348 (394)
T ss_pred ---HHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCee--cCCCeeeE--EEEECC-----CCCCHHHHHHHHHH
Confidence 11122232 22445556666667778888888876 4433 22222222 235554 135667777654 5
Q ss_pred HCCCccCC-CCCC--CCCEEEEecc
Q 001989 929 DYGFHGPT-MSWP--VPGTLMIEPT 950 (985)
Q Consensus 929 ~~Gi~~~~-~~~p--~~~~lris~t 950 (985)
++||.+.. ..|. .++++||++.
T Consensus 349 ~~gV~v~~g~~f~~~~~~~iRis~~ 373 (394)
T PRK05942 349 KTGVVVTPGNAFGEGGEGYVRISLI 373 (394)
T ss_pred HCCEEEeCChhhCcCCCCeEEEEec
Confidence 78998743 2232 2479999995
No 308
>PRK03321 putative aminotransferase; Provisional
Probab=99.66 E-value=2.8e-15 Score=171.32 Aligned_cols=282 Identities=12% Similarity=0.098 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
..++++.+++++|.+...+..++|++.. ...+++.. ..++++|+++.+.+..++..++..|++++.+|.++++
T Consensus 59 ~~~lr~~ia~~~~~~~~~I~~~~G~~~~--l~~~~~~~-----~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~~~~ 131 (352)
T PRK03321 59 AVELRAALAEHLGVPPEHVAVGCGSVAL--CQQLVQAT-----AGPGDEVIFAWRSFEAYPILVQVAGATPVQVPLTPDH 131 (352)
T ss_pred HHHHHHHHHHHhCcCHHHEEECCCHHHH--HHHHHHHh-----cCCCCEEEeCCCCHHHHHHHHHHcCCEEEEccCCCCC
Confidence 3577888999999877666666676532 12222322 1478899998775555556678899999999997678
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHH--cCCEEEEEccccccc-cCCCCCC----ccCCc
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHD--NGGQVYMDGANMNAQ-VGLTSPG----YIGAD 785 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~--~galliVD~a~~~~~-~~l~~pg----~~g~D 785 (985)
.+|+++++++++ +++++|++++| |++|.+. |.++|.++|+. +|+++++|+++..-. .+...+. ....+
T Consensus 132 ~~~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~-~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 207 (352)
T PRK03321 132 THDLDAMAAAIT---DRTRLIFVCNPNNPTGTVV-TPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPN 207 (352)
T ss_pred CCCHHHHHHhhc---cCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCC
Confidence 899999999997 68899999998 5799998 89999999997 589999999873111 1100010 11123
Q ss_pred -EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 786 -VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 786 -i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
+++.|+.|.|++| |-++|++++++++.+.+.... ....++ .....++.+.+. .
T Consensus 208 vi~~~S~SK~~g~~----GlRiG~~v~~~~~~~~~~~~~--------------~~~~~s------~~~q~~a~~~l~--~ 261 (352)
T PRK03321 208 VVVLRTFSKAYGLA----GLRVGYAVGHPEVIAALRKVA--------------VPFSVN------SLAQAAAIASLA--A 261 (352)
T ss_pred EEEEecchHHhhhH----HHhhhhhcCCHHHHHHHHHhc--------------CCCCCC------HHHHHHHHHHhc--C
Confidence 4566788888543 567999998877665442110 001111 111112223332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCC
Q 001989 865 SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPG 943 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~ 943 (985)
.+.+.+..++..+..+++.+.|++ ++.+ .++.+. + +.+.+. .+..++.+.|.++||.+.... .+
T Consensus 262 ~~~~~~~~~~~~~~r~~~~~~L~~~~~~~--~~~~g~-~--i~i~l~-------~~~~~~~~~l~~~gI~v~~~~---~~ 326 (352)
T PRK03321 262 EDELLERVDAVVAERDRVRAALRAAGWTV--PPSQAN-F--VWLPLG-------ERTADFAAAAAEAGVVVRPFA---GE 326 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCcc--CCCCCC-E--EEEeCC-------CCHHHHHHHHHHCCEEEEccC---CC
Confidence 233444445555666778888876 4332 222222 2 334432 357889999999999876432 35
Q ss_pred EEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 944 TLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 944 ~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.+||++ .+.+++++ ++++|+++++
T Consensus 327 ~iRi~~---~~~~~~~~--~~~al~~~~~ 350 (352)
T PRK03321 327 GVRVTI---GAPEENDA--FLRAARAWRA 350 (352)
T ss_pred cEEEee---CCHHHHHH--HHHHHHHHhc
Confidence 699997 79999999 7777776654
No 309
>PLN02187 rooty/superroot1
Probab=99.66 E-value=3.3e-14 Score=167.67 Aligned_cols=362 Identities=14% Similarity=0.109 Sum_probs=206.4
Q ss_pred HHHHHHHHHHhccc-cCcccccccccccccCCCc----cccccc-----cccccccccCCCCchhhhhhHHHHHHHHHHH
Q 001989 571 HELLRYIHLLQSKE-LSLCHSMIPLGSCTMKLNA----TTEMMP-----VTWPSFANIHPFAPADQAQGYQEMFNNLGEW 640 (985)
Q Consensus 571 ~e~~~~l~~l~~~~-~~~~~~~~~lG~~t~~~~~----~~~~~~-----~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~ 640 (985)
..++.....+.++- ......+++||.+.|.+.+ ..+... +.... .+.|.| .+|..++.+.+.++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~---~~~Y~~---~~G~~~lR~aiA~~ 120 (462)
T PLN02187 47 VTLRGVIYMLFDNCGKDVNKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGK---GNSYGP---GAGILPARRAVADY 120 (462)
T ss_pred chHhhHHHHHHhhcccCCCCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCC---CCCCCC---CCChHHHHHHHHHH
Confidence 34555555553321 1123457899988665322 111111 11122 223433 35766555555555
Q ss_pred HHHHhC--CCccceecCcH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC--CCCCC
Q 001989 641 LCTITG--FDSFSLQPNAG-AAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD--AKGNI 715 (985)
Q Consensus 641 la~l~G--~~~~~~~~~sG-a~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d--~~g~i 715 (985)
+.+.+| .+...+..++| ++|...++. .+. .++|+|+++++.+..+...++..|++++.++.. .++.+
T Consensus 121 ~~~~~~~~~~~~~I~it~G~~~al~~~~~---~l~-----~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~ 192 (462)
T PLN02187 121 MNRDLPHKLTPEDIFLTAGCNQGIEIVFE---SLA-----RPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEI 192 (462)
T ss_pred HHHhcCCCCCcccEEEeCCHHHHHHHHHH---Hhc-----CCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCcc
Confidence 554444 34445544444 455533333 321 478999999988777777788999999999874 35789
Q ss_pred CHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccc-ccC--CCCCCccC---CcE
Q 001989 716 NIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNA-QVG--LTSPGYIG---ADV 786 (985)
Q Consensus 716 D~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~-~~~--l~~pg~~g---~Di 786 (985)
|+++|+++++ +++++|++++| |++|.+. ..+++|.++|+++|+++++|+++..- ..+ +.....+. .=+
T Consensus 193 d~~~l~~~~~---~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi 269 (462)
T PLN02187 193 DLEGIEAIAD---ENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVL 269 (462)
T ss_pred CHHHHHHhcC---CCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEE
Confidence 9999999987 78899999999 4799986 24889999999999999999987421 111 00111111 125
Q ss_pred EEeCCcccccccCCCCCCceEEEEEc-cc-c---cCcCCCCccccCCCCCCCCCCCCCCCC--CCcchhhhHHHHHHHHH
Q 001989 787 CHLNLHKTFCIPHGGGGPGMGPIGVK-KH-L---APFLPSHPVVSTGGIPAPEKSQPLGTI--AAAPWGSALILPISYTY 859 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg~G~i~~~-~~-l---~~~lp~~~~g~~~~~~~~~~~~~~~~i--~s~~~g~~~~~~~a~a~ 859 (985)
++.|+.|+|++| |.++|++++. ++ . ...+... + ...++ +.+...+. ++.++
T Consensus 270 ~l~SfSK~f~~p----GlRiG~~v~~~p~~~~~~~~~~~~~------------~--~~~~~~~~~s~~~Q~----a~~~~ 327 (462)
T PLN02187 270 TLAGISKGWVVP----GWKIGWIALNDPEGVFETTKVLQSI------------K--QNLDVTPDPATIIQA----ALPAI 327 (462)
T ss_pred EEecchhhcCCc----cceeEEEEecCchhHHHHHHHHHHH------------H--HhccccCCCCHHHHH----HHHHH
Confidence 667888988765 7899999984 22 1 1111100 0 00011 11111121 12223
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCee-ecCCCCceeeEEEEEecCccccCCC-CHHHHHHHH-HHCCCccCC
Q 001989 860 IAMMGSKGLTEASKIAILNANYMAKRLEKHYPIL-FRGVNGTVAHEFIVDLRGLKNTAGI-EPEDVAKRL-MDYGFHGPT 936 (985)
Q Consensus 860 l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~-~~~~~~~~~~~~iv~~~~~~~~~g~-~~~~v~~~L-~~~Gi~~~~ 936 (985)
+..-..+-+++..+...++++++.+.|++...+. +..+.+..+ +.++++.- ...+. +..+++..| .++|+.+..
T Consensus 328 L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P~gg~f--l~~~l~~~-~~~~~~~~~~~~~~ll~~~gV~v~p 404 (462)
T PLN02187 328 LEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTY--LLTKLELS-LMDNIKDDIDFCVKLAREENLVFLP 404 (462)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCCCEeEE--EEeecChh-hCCCCCCHHHHHHHHHhhCCEEEEC
Confidence 3221233455555667778888999998621111 112222222 22333200 00122 355665554 778987643
Q ss_pred -CCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccCC
Q 001989 937 -MSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMGR 978 (985)
Q Consensus 937 -~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~~ 978 (985)
..|..++++||++.. ..+.++. .++.|.+.++++....
T Consensus 405 G~~fg~~~~iRis~~~--~~e~l~~--al~rL~~~l~~~~~~~ 443 (462)
T PLN02187 405 GDALGLKNWMRITIGV--EAHMLED--ALERLKGFCTRHAKKT 443 (462)
T ss_pred ccccCCCCeEEEEeCC--CHHHHHH--HHHHHHHHHHHhhhcc
Confidence 234446899999974 5788888 7788888888766544
No 310
>PRK05968 hypothetical protein; Provisional
Probab=99.66 E-value=5e-15 Score=170.86 Aligned_cols=275 Identities=14% Similarity=0.116 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH----HHHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP----ATAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~----~~a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+.+ +.+++|+.|+..+++++. .+||+||++...|+... ..+...|+++++++.
T Consensus 65 ~~~le~~lA~l~g~~~a-v~~~sG~~Ai~~al~al~--------~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 135 (389)
T PRK05968 65 VRAFEEMLAKLEGAEDA-RGFASGMAAISSTVLSFV--------EPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDG 135 (389)
T ss_pred HHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCC
Confidence 55889999999999765 445678776654444321 47889999877666432 234568999999886
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |++++++++ ++|++|++++|+ ..+.+. |+++|+++||++|+++++|+++... ....|..+|+|+++
T Consensus 136 ~-----d~~~l~~~i----~~tklV~ie~pt~~~~~~~-dl~~i~~la~~~gi~vivD~a~a~~--~~~~p~~~g~Divv 203 (389)
T PRK05968 136 R-----DEEAVAKAL----PGAKLLYLESPTSWVFELQ-DVAALAALAKRHGVVTMIDNSWASP--VFQRPITLGVDLVI 203 (389)
T ss_pred C-----CHHHHHHhc----ccCCEEEEECCCCCCCcHH-HHHHHHHHHHHcCCEEEEECCCcch--hccCchhcCCcEEE
Confidence 3 899999887 367899999985 567776 8999999999999999999987432 23456678999999
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCC-CCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG-TIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~-~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.|++|+|+.| |++++|+++.++++.+.+..... ...+ .+. + ..||..+. +-+.
T Consensus 204 ~S~tK~l~g~---~~~~gG~i~~~~~~~~~l~~~~~------------~~~g~~~~------~---~~A~~~l~--~L~t 257 (389)
T PRK05968 204 HSASKYLGGH---SDTVAGVVAGSKEHIARINAEAY------------PYLGAKLS------P---FEAWLLLR--GLRT 257 (389)
T ss_pred eeccccccCC---CCeEEEEEEECHHHHHHHHHHHH------------HhCCCCCC------h---HHHHHHHc--ccCc
Confidence 9999999632 34567888888765543321000 0011 111 1 11233333 3345
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC---eeecCCCC-------ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccC--
Q 001989 868 LTEASKIAILNANYMAKRLEKHYP---ILFRGVNG-------TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP-- 935 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g~~---l~~~~~~~-------~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~-- 935 (985)
+..+.++..+++.++++.|++... +.+++-.. .....+.+.+. .+.+..++.++|...++.++
T Consensus 258 l~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~-----~~~~~~~f~~~L~~~~~~~s~G 332 (389)
T PRK05968 258 LPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFR-----EGIDVRAFADALKLFRLGVSWG 332 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEEC-----CHHHHHHHHHhCCccEEecCCC
Confidence 667777888889999999986332 22332110 11113344443 13456778888866554322
Q ss_pred C-CC------------C--------CC-CCEEEEeccCCCCHHHHHH
Q 001989 936 T-MS------------W--------PV-PGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 936 ~-~~------------~--------p~-~~~lris~t~~~t~eeId~ 960 (985)
. .+ . .+ ++.+|+|+...++++=|+.
T Consensus 333 ~~~slv~p~~~~~~~~~~~~~~~~~gi~~~liR~SvGlE~~~dl~~d 379 (389)
T PRK05968 333 GHESLVVPAEVVLQQKAQPNSAARFGVSPRSVRLHVGLEGTEALWAD 379 (389)
T ss_pred CCCceeeeCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHH
Confidence 1 00 0 01 4689999988776555555
No 311
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=99.66 E-value=1.5e-14 Score=166.55 Aligned_cols=213 Identities=24% Similarity=0.264 Sum_probs=155.8
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--- 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~--- 289 (985)
..++++.+|+++|.+. +.++++|++++.++++++ . ++||+||++...|+.....+..+++..|++++++|.+
T Consensus 56 ~~~le~~la~l~g~~~--~~~~~sG~~Ai~~al~al-~--~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~d~~ 130 (380)
T TIGR01325 56 VAAFEERIAALEGAER--AVATATGMSAIQAALMTL-L--QAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDPTDLN 130 (380)
T ss_pred HHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHH-h--CCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECCCCHH
Confidence 4567799999999865 667899999888877665 2 3789999999999888777776667789999998764
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ +++++++|++++| |++|.+.|+++|+++||++|++++|| +.++.+....|.++|+||++.|. |.++++ |
T Consensus 131 ~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD-~a~~~~~~~~pl~~g~Divv~S~sK~l~g~---g 206 (380)
T TIGR01325 131 AWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVD-NVFATPVLQQPLKLGADVVVYSATKHIDGQ---G 206 (380)
T ss_pred HHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEE-CCCcccccCCchhhCCCEEEeeccceecCC---C
Confidence 4555 7788999999998 78999999999999999999999994 34444445556788999999998 777542 1
Q ss_pred CCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 367 GPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 367 GP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
-.-+|++..++++.+.+-. .++..|.. .++.. + ++...+.+-++.+
T Consensus 207 ~~~gG~vv~~~~~~~~l~~-------------------------~~~~~g~~----~~p~~---a--~~~l~~l~tl~~r 252 (380)
T TIGR01325 207 RVMGGVIAGSEELMAEVAV-------------------------YLRHTGPA----MSPFN---A--WVLLKGLETLSLR 252 (380)
T ss_pred CeEEEEEEeCHHHHHHHHH-------------------------HHHhhCCC----CCHHH---H--HHHHhccCcHHHH
Confidence 1224777777776554310 00111111 12221 1 2245566677778
Q ss_pred HHHHHHHHHHHHHHHhcCCCeE
Q 001989 447 AQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
.++..+++.++.+.|++.++++
T Consensus 253 ~~~~~~~a~~la~~L~~~p~v~ 274 (380)
T TIGR01325 253 MQKQFDSALAIAEWLQAQPQVQ 274 (380)
T ss_pred HHHHHHHHHHHHHHHHcCCCcc
Confidence 8888999999999999886454
No 312
>PRK05967 cystathionine beta-lyase; Provisional
Probab=99.66 E-value=1.8e-14 Score=164.91 Aligned_cols=212 Identities=17% Similarity=0.108 Sum_probs=156.7
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---h
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---K 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~ 289 (985)
...+++.++.|.|.+. ..++.+|++++.++++++ + ++||+||+++..++.+...+...++..|+++++++. +
T Consensus 66 ~~~Le~~la~le~~~~--~v~~sSG~aAi~~~l~al-l--~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~~~~e 140 (395)
T PRK05967 66 TDALCKAIDALEGSAG--TILVPSGLAAVTVPFLGF-L--SPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDPEIGA 140 (395)
T ss_pred HHHHHHHHHHHhCCCC--EEEECcHHHHHHHHHHHh-c--CCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCCCCHH
Confidence 3346688999988664 567777888888877765 3 389999999999999888776667789999999986 3
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++++| |++|.+.||++|+++||++|++++|| +.++.++...|.+|||||++.|+ |.+++ .|
T Consensus 141 ~l~~al~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD-~t~a~p~~~~pl~~GaDivv~S~tKy~~G---h~ 216 (395)
T PRK05967 141 GIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMD-NTWATPLYFRPLDFGVDISIHAATKYPSG---HS 216 (395)
T ss_pred HHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEE-CCccCceecChhHcCCCEEEEecccccCC---CC
Confidence 4676 8889999999987 78999999999999999999999995 45566667789999999999999 65542 23
Q ss_pred CCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 367 GPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 367 GP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
+--+|.+..++++.+++- ..++..|.. + ++. ..|+...|.+-|.-+
T Consensus 217 d~~~G~v~~~~~~~~~l~-------------------------~~~~~~G~~-~---~p~-----da~l~~rgl~Tl~lR 262 (395)
T PRK05967 217 DILLGTVSANEKCWPQLL-------------------------EAHGTLGLC-A---GPD-----DTYQILRGLRTMGIR 262 (395)
T ss_pred CeeEEEEEcCHHHHHHHH-------------------------HHHHHcCCC-C---CHH-----HHHHHHcCcccHHHH
Confidence 323466666655433320 001111211 0 111 134567777778888
Q ss_pred HHHHHHHHHHHHHHHhcCCCe
Q 001989 447 AQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~ 467 (985)
.++..+++..+++.|++...+
T Consensus 263 ~~~~~~na~~lA~~L~~hp~v 283 (395)
T PRK05967 263 LEHHRKSALEIARWLEGRPDV 283 (395)
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 889999999999999987534
No 313
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=99.66 E-value=3.7e-14 Score=166.38 Aligned_cols=328 Identities=13% Similarity=0.126 Sum_probs=195.0
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC----ccceecCcHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD----SFSLQPNAGAAGEYAGLMV 667 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~----~~~~~~~sGa~a~~a~l~a 667 (985)
..+|++++.+..+...+.......... .+. .+...++.+.|++++... ...|+.+||++|++++++.
T Consensus 51 ~~lGh~~p~i~~ai~~q~~~~~~~~~~-~~~--------~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~Alkl 121 (442)
T TIGR00709 51 LALGHNHPNMKQKILDYLQSGLPLHTL-DLT--------TPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKL 121 (442)
T ss_pred hcCCCCCHHHHHHHHHHHHhccCcccc-ccC--------cHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHH
Confidence 468998887776655543221111110 011 123446778888887532 2235568999999999999
Q ss_pred HHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC-------c-----EEEEEcCCCCCCC--------CH----HHHHH
Q 001989 668 IRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG-------M-----KIVSVGTDAKGNI--------NI----EELRK 722 (985)
Q Consensus 668 ir~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G-------~-----~vv~v~~d~~g~i--------D~----e~L~~ 722 (985)
+|.| +++.+||. ..++||.........| . .+..+|.....+. +. +.+++
T Consensus 122 Ar~~------tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (442)
T TIGR00709 122 AKTY------TGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFEN 195 (442)
T ss_pred HHHh------cCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHH
Confidence 9886 23456665 7789998766654322 1 2333443211111 11 22344
Q ss_pred HHHh---cCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEE
Q 001989 723 AAEA---NRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVC 787 (985)
Q Consensus 723 ~i~~---~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~ 787 (985)
.++. ..+++++|+++.. +..|++.+ -+++|.++|+++|+++|+|+++ .++.+.|.+ -+|++
T Consensus 196 ~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~----tGfGRtG~~~a~~~~gv~PDiv 271 (442)
T TIGR00709 196 FIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQ----AGFGRSGTMFAFEHAGIEPDFV 271 (442)
T ss_pred HHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc----cCCCCCCchhHHHHcCCCCcEE
Confidence 4431 1246888888763 44565532 4899999999999999999886 344444432 26998
Q ss_pred EeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
++ .|.++ +| ..+|.+++++++....+.. ..+++.|+++.++++.+.|..+..++
T Consensus 272 ~~--gK~l~----~G-~Pigav~~~~~~~~~~~~~-------------------~~~T~~gnpla~aaa~a~L~~i~~~~ 325 (442)
T TIGR00709 272 VM--SKAVG----GG-LPLAVLLIAPEFDAWQPAG-------------------HTGTFRGNQLAMVTGTEALNYWKDDN 325 (442)
T ss_pred EE--ccccc----CC-cccEEEEEchHHhccCCCc-------------------CCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 85 37764 34 4567777776643222110 01234567777888888888887665
Q ss_pred HHHHHHHHHHHHHHHHHHhhc---cCCee--ecCCCCceeeEEEEEecCc---ccc---C--CC-CHHHHHHHHHHCCCc
Q 001989 868 LTEASKIAILNANYMAKRLEK---HYPIL--FRGVNGTVAHEFIVDLRGL---KNT---A--GI-EPEDVAKRLMDYGFH 933 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~---g~~l~--~~~~~~~~~~~~iv~~~~~---~~~---~--g~-~~~~v~~~L~~~Gi~ 933 (985)
+.+ +..++.++|.++|++ .++++ +.+. + .+ +.+.+..- ++. . .. ....+...+.++|++
T Consensus 326 l~~---~~~~~g~~l~~~L~~l~~~~~~v~~vrG~-G-l~--~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl 398 (442)
T TIGR00709 326 LAQ---NAQERGERITSFLDDMIKEHPCIGNVRGR-G-LM--QGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLL 398 (442)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHhCCCeeeeecc-c-eE--EEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeE
Confidence 544 566777888888864 22321 1121 2 22 12222100 000 0 00 135677788899998
Q ss_pred cCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 934 GPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 934 ~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+..... ..+.||+.|+..+|++|||+ +++++++++.++
T Consensus 399 ~~~~~~-~~~~l~~~Ppl~it~~ei~~--~~~~l~~~l~~~ 436 (442)
T TIGR00709 399 LETGGR-EGEVFRLLCPITIDQEECEE--GISRFKQAVEEA 436 (442)
T ss_pred EeecCC-CCCEEEEECCCCCCHHHHHH--HHHHHHHHHHHH
Confidence 753221 14799999999999999999 778888888654
No 314
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=99.66 E-value=1.4e-14 Score=167.43 Aligned_cols=277 Identities=17% Similarity=0.186 Sum_probs=181.1
Q ss_pred HhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001989 205 IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 205 ~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~ 284 (985)
..+|..+...++++.+++++|.+. ..+..+|+.++.+++.++ + ++||+|+++...|+++...++. .|++++
T Consensus 72 ~~~g~~~l~~~l~~~l~~~~g~~~--~i~~~sG~~a~~~a~~~~-~--~~gd~vi~~~~~~~~~~~~~~~----~g~~~~ 142 (385)
T TIGR01825 72 TIAGTLRLHEELEEKLAKFKKTEA--ALVFQSGFNTNQGVLSAL-L--RKGDIVLSDELNHASIIDGLRL----TKATKK 142 (385)
T ss_pred cccCCcHHHHHHHHHHHHHhCCCc--EEEECcHHHHHHHHHHHh-C--CCCCEEEEEccccHHHHHHHHh----cCCceE
Confidence 456778888899999999999753 344455565555444443 2 3889999999999999877653 355544
Q ss_pred E---eCchhhhc-c----CCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCC---------CCc
Q 001989 285 V---SDLKDIDY-K----SGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP---------PGE 346 (985)
Q Consensus 285 ~---v~~~~l~~-l----~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~---------~~~ 346 (985)
. +|++++++ + ++++++|++.++ |.+|.+.|+++|.++||++|+++++| +..+.+.+.. .-.
T Consensus 143 ~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~D-e~~~~~~~~~~~~~~~~~~~~~ 221 (385)
T TIGR01825 143 IYKHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVD-DAHGSGVMGEAGRGTVHHFGLE 221 (385)
T ss_pred EeCCCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEE-CcccccCcCCCCCccHhhcCCC
Confidence 4 45556655 3 246888877665 78999999999999999999999994 3444332221 113
Q ss_pred ccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhH
Q 001989 347 LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQA 425 (985)
Q Consensus 347 ~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~ 425 (985)
.+.||++++. |+|+. ++ |+++.++++++.+... ..+ |.+ ++ ..++..
T Consensus 222 ~~~~i~~~s~sK~~~~------~g-G~~~~~~~~~~~~~~~---------~~~-~~~-------------~~--~~~~~~ 269 (385)
T TIGR01825 222 DKVDIQVGTLSKAIGV------VG-GYAAGHKELIEYLKNR---------ARP-FLF-------------ST--AQPPAV 269 (385)
T ss_pred cCCcEEEEeccHHhhc------CC-CEEecCHHHHHHHHHh---------Ccc-ccc-------------cC--CCCHHH
Confidence 5788988997 88753 22 6888787776654100 000 100 11 001122
Q ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeee
Q 001989 426 LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVV 502 (985)
Q Consensus 426 l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~ 502 (985)
..+..+++ ..+... .++.++..++.+++.+.|+++| +++..+ ..+.+.+..+. ..++.+.|.++||.++..
T Consensus 270 ~~a~~~al--~~~~~~--~~~~~~~~~~~~~l~~~L~~~g-~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~ 343 (385)
T TIGR01825 270 VAALAAAV--DELQRS--PELMERLWDNTRFFKAGLGKLG-YDTGGS-ETPITPVVIGDEKAAQEFSRRLFDEGIFAQSI 343 (385)
T ss_pred HHHHHHHH--HHHhcC--HHHHHHHHHHHHHHHHHHHHcC-CCCCCC-CCCEEEEEECCHHHHHHHHHHHHHCCcEEccc
Confidence 33333443 222221 2466777788999999999887 776532 11223333332 678999999999987431
Q ss_pred -------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 -------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
....+|++++.++|+|||++++++|++
T Consensus 344 ~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~ 377 (385)
T TIGR01825 344 VFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEK 377 (385)
T ss_pred CCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHH
Confidence 125799999999999999999999974
No 315
>PRK07777 aminotransferase; Validated
Probab=99.66 E-value=1.8e-14 Score=166.74 Aligned_cols=297 Identities=15% Similarity=0.092 Sum_probs=184.7
Q ss_pred hhHHHHHHHHHHHHHHHhCCCc--c-c-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDS--F-S-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~--~-~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+.+.+++.+.+|.+. . . +..++|++|..+++.++ . .++|+|+++.+.|+.+...++..|.+
T Consensus 61 ~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~---~-----~~gd~vli~~p~y~~~~~~~~~~g~~ 132 (387)
T PRK07777 61 PGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGL---V-----EPGDEVLLIEPYYDSYAAVIAMAGAH 132 (387)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHh---c-----CCCCEEEEeCCCchhhHHHHHHCCCE
Confidence 5666666666677777778652 2 3 44455565664433322 1 46789999888777777777889999
Q ss_pred EEEEcCCCC---CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc--c-
Q 001989 704 IVSVGTDAK---GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ--V- 774 (985)
Q Consensus 704 vv~v~~d~~---g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~--~- 774 (985)
++.++.+++ +.+|+++|+++++ +++++|++++| |++|.+. .++++|.++|+++|+++++|.++.... +
T Consensus 133 ~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~ 209 (387)
T PRK07777 133 RVPVPLVPDGRGFALDLDALRAAVT---PRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGA 209 (387)
T ss_pred EEEeecCCccCCCcCCHHHHHHhcC---cccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCC
Confidence 999998654 4699999999987 68899999998 5789874 258999999999999999999873211 0
Q ss_pred ---CCCC-CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhh
Q 001989 775 ---GLTS-PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 775 ---~l~~-pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~ 850 (985)
.+.. ++..+.++++.|++|+|+.| |.++|++++++++...+.... .......+ ++ .+.
T Consensus 210 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~----GlRiG~~~~~~~l~~~~~~~~------------~~~~~~~~-~~-~q~ 271 (387)
T PRK07777 210 RHLPLATLPGMRERTVTISSAAKTFNVT----GWKIGWACGPAPLIAAVRAAK------------QYLTYVGG-AP-FQP 271 (387)
T ss_pred CcccHhhCCCCcCcEEEEeechhhccCc----CceeEEEecCHHHHHHHHHHH------------hhcccCCC-CH-HHH
Confidence 1111 12234678899999998654 667999998876654332110 00000111 11 011
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-
Q 001989 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM- 928 (985)
Q Consensus 851 ~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~- 928 (985)
++..++. .+.+-+++..+...++++++.+.|++ ++++. .+.+.++ +.+.++.. ...+..++++.|.
T Consensus 272 ----~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~g~~~--~~~~~~~~---~~~~~~~~~~~l~~ 339 (387)
T PRK07777 272 ----AVAHALD-HEDAWVAALRDSLQAKRDRLAAGLAEAGFEVH--DSAGTYF--LCADPRPL---GYDDGTEFCRALPE 339 (387)
T ss_pred ----HHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHHhCCCCcc--CCCcceE--EEeccccc---CCCCHHHHHHHHHH
Confidence 1112222 12333445555677888889999976 44432 2223222 22343211 0236788999996
Q ss_pred HCCCccCCCC-C-----CCCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 929 DYGFHGPTMS-W-----PVPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 929 ~~Gi~~~~~~-~-----p~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
++||.+.... | +..+.+||++.. +++++++ .++.|.+
T Consensus 340 ~~gv~v~pg~~f~~~~~~~~~~~Ri~~~~--~~~~l~~--~l~~l~~ 382 (387)
T PRK07777 340 RVGVAAIPMSVFYDPADAWNHLVRFAFCK--RDDTLDE--AIRRLRA 382 (387)
T ss_pred hCCEEEeCchHhCCCCcCCCCeEEEEecC--CHHHHHH--HHHHHHH
Confidence 5799864321 2 124689999864 6888888 5555544
No 316
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=99.66 E-value=3.1e-14 Score=164.68 Aligned_cols=288 Identities=15% Similarity=0.143 Sum_probs=178.6
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--cc-ceecCcHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--SF-SLQPNAGA-AGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~~-~~~~~sGa-~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+.+.+++.+.+|.+ .. .+..++|+ ++.. .+++.+. .++|+|+++++.++.+...++..|++
T Consensus 69 ~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~---~~~~~~~-----~~gd~Vl~~~P~y~~~~~~~~~~g~~ 140 (385)
T PRK09276 69 EGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIA---HIPLAFV-----NPGDVVLVPDPGYPVYKIGTIFAGGE 140 (385)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHH---HHHHHhC-----CCCCEEEEcCCCCcChHHHHHHcCCE
Confidence 565566666666666655653 33 35554554 4442 3333331 47889999998887777778899999
Q ss_pred EEEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cCCC
Q 001989 704 IVSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VGLT 777 (985)
Q Consensus 704 vv~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~l~ 777 (985)
++.+|.+.+ +.+|++++++++. +++++|++++| |++|.+.+ .+++|+++|+++|+++++|.++.... .+..
T Consensus 141 ~~~v~~~~~~g~~~d~~~l~~~~~---~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~ 217 (385)
T PRK09276 141 PYFMPLKEENGFLPDLDAIPEDVA---KKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYK 217 (385)
T ss_pred EEEEecCCCCCCcCCHHHHHHhcc---ccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCC
Confidence 999998643 5689999998886 68899999998 57999872 36899999999999999999874211 1110
Q ss_pred CC------CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 778 SP------GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 778 ~p------g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
.+ ...+..+++.|+.|.|+.| |.++|++++++++.+.+.... ......+. ..
T Consensus 218 ~~~~~~~~~~~~~~i~~~S~SK~~g~~----GlRiG~~i~~~~l~~~~~~~~------------~~~~~~~~------~~ 275 (385)
T PRK09276 218 PPSFLEVPGAKDVGIEFHSLSKTYNMT----GWRIGFAVGNADLIAGLGKVK------------SNVDSGVF------QA 275 (385)
T ss_pred CCChhccCCCcCCEEEEecchhhcCCc----chhheeeeCCHHHHHHHHHHH------------hhccCCCC------HH
Confidence 01 1122347778888988543 667999998877655432100 00000111 11
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-H
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-D 929 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~ 929 (985)
...++..++.. ..+-+++..++..++++++.+.|++ ++.+. .+.+.++ +.+.++ .+.+..+++++|. +
T Consensus 276 ~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~~~~--~~v~~~-----~~~~~~~l~~~ll~~ 345 (385)
T PRK09276 276 IQEAGIAALNG-PQEVVEELRKIYQERRDILVEGLRKLGLEVE--PPKATFY--VWAPVP-----KGYTSAEFATLLLDK 345 (385)
T ss_pred HHHHHHHHHcC-cHHHHHHHHHHHHHHHHHHHHHHHhCCCccc--CCCcceE--EEEECC-----CCCCHHHHHHHHHHh
Confidence 11112222321 2333455555667778889998887 33332 2222222 345554 2457788998876 5
Q ss_pred CCCccCCC-CCC--CCCEEEEeccCCCCHHHHHH
Q 001989 930 YGFHGPTM-SWP--VPGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 930 ~Gi~~~~~-~~p--~~~~lris~t~~~t~eeId~ 960 (985)
+||.+... .|. .++++||++. .+++++..
T Consensus 346 ~gi~v~~g~~f~~~~~~~~Ris~~--~~~~~l~~ 377 (385)
T PRK09276 346 AGVVVTPGNGFGEYGEGYFRIALT--VPDERIEE 377 (385)
T ss_pred CCEEECCchhhCCCCCCeEEEEeC--CCHHHHHH
Confidence 79987542 222 2479999986 35666666
No 317
>PRK07036 hypothetical protein; Provisional
Probab=99.65 E-value=3.2e-14 Score=167.51 Aligned_cols=338 Identities=14% Similarity=0.176 Sum_probs=200.6
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~ 670 (985)
..+|++++.+..+...+.........+..+. .+...++.+.|++++..+. ..++.+||++|++++++.+|.
T Consensus 63 ~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~--------~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~ 134 (466)
T PRK07036 63 VNVGYGREEMADAIADQARRLPYYTPFGDMT--------NAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHY 134 (466)
T ss_pred hcCCCCCHHHHHHHHHHHHhCcccccccccC--------CHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHH
Confidence 4578887777766554432211111110011 1224467788888874322 356789999999999999998
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCCC----CCC--------CHHHHHHHHH
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDAK----GNI--------NIEELRKAAE 725 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~~----g~i--------D~e~L~~~i~ 725 (985)
|...+|..++.+||. ...+||....+....| ..+..+|.... ... .++.+++.+.
T Consensus 135 ~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~ 214 (466)
T PRK07036 135 YFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKIL 214 (466)
T ss_pred HHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHH
Confidence 765555334566775 6679997754432211 11333443110 011 1345666665
Q ss_pred h-cCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCCc-------c--CCcEEEeCC
Q 001989 726 A-NRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY-------I--GADVCHLNL 791 (985)
Q Consensus 726 ~-~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~pg~-------~--g~Di~~~s~ 791 (985)
. ..+++++|+++-. ...|++.+| +++|.++|+++|+++|+|+++ .|+++.|. + .+|+++++
T Consensus 215 ~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~----tGfGRtG~~~~~~~~~gv~PDivt~g- 289 (466)
T PRK07036 215 SLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVV----TGFGRLGHFFASEAVFGIQPDIITFA- 289 (466)
T ss_pred HcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeech----hCCCcCchhhhhhhhcCCCCCEEEEc-
Confidence 3 3467889988753 345766522 899999999999999999887 33334331 2 37898774
Q ss_pred cccccccCCCCC--CceEEEEEcccccCcCCCC-ccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 792 HKTFCIPHGGGG--PGMGPIGVKKHLAPFLPSH-PVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 792 hK~l~~p~g~GG--Pg~G~i~~~~~l~~~lp~~-~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
|.++ || | +|.+++++++.+.+... ..+ .. ....+++.|+++.++++.+.|..+..+++
T Consensus 290 -K~l~-----gG~~P-i~av~~~~~i~~~~~~~~~~~-----------~~-~~~~~T~~gnpl~~aaa~a~Le~i~~~~l 350 (466)
T PRK07036 290 -KGLT-----SGYQP-LGAVIISERLLDVISGPNAKG-----------NV-FTHGFTYSGHPVACAAALKNIEIMEREGL 350 (466)
T ss_pred -cccc-----cCccc-cEEEEEcHHHHHHHhcccCcC-----------cc-cccCCCCCCCHHHHHHHHHHHHHHHhCCH
Confidence 7763 34 5 55566687766543211 000 00 01123456678888888899988876654
Q ss_pred HHHHHHHHHHHHHHHHHhhcc--CCee--ecCCCCceeeEEEEEecC---ccccCCC---CHHHHHHHHHHCCCccCCCC
Q 001989 869 TEASKIAILNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLRG---LKNTAGI---EPEDVAKRLMDYGFHGPTMS 938 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g--~~l~--~~~~~~~~~~~~iv~~~~---~~~~~g~---~~~~v~~~L~~~Gi~~~~~~ 938 (985)
. ++..++.++|+++|++. ++++ ..+. + .+ +.+.+.. .+..... ....+.+.+.++|+.+...
T Consensus 351 ~---~~~~~~g~~l~~~L~~l~~~~~v~~vrG~-G-l~--~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~- 422 (466)
T PRK07036 351 C---EHVREVGPYFEERLASLRELPLVGDVRGD-H-LM--ACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPL- 422 (466)
T ss_pred H---HHHHHHHHHHHHHHHHhccCCCEEEEEee-c-eE--EEEEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeec-
Confidence 3 46677788888888642 2221 1111 1 12 2233310 0000000 1346778888999987432
Q ss_pred CCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 939 WPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 939 ~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.+.++++|+...|++|||+ +++++.+++..+
T Consensus 423 ---~~~~~l~Ppl~it~~~id~--~~~~l~~al~~~ 453 (466)
T PRK07036 423 ---EHLCVLSPPLIITRAQIDE--IVAILRAAIEET 453 (466)
T ss_pred ---CCEEEEeCCCcCCHHHHHH--HHHHHHHHHHHH
Confidence 3689999999999999999 778888887665
No 318
>PRK07050 cystathionine beta-lyase; Provisional
Probab=99.65 E-value=1.1e-14 Score=168.11 Aligned_cols=212 Identities=20% Similarity=0.113 Sum_probs=155.8
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|++.|.+ ++.+++|||+++.++++++ + ++||+||+++..|+.+...+...++..|+++++++. ++
T Consensus 68 ~~Le~~lA~l~g~~--~~l~~~sgt~Ai~~~l~al-~--~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~~~~~ 142 (394)
T PRK07050 68 LALAQRLAEIEGGR--HALLQPSGLAAISLVYFGL-V--KAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDPLIGAG 142 (394)
T ss_pred HHHHHHHHHHhCCC--eEEEeccHHHHHHHHHHHH-h--CCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECCCCHHH
Confidence 45778999999976 4888899999888877765 3 389999999999998887766556678999999875 45
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++.+| |.+|.+.|+++|+++||++|+++++| +.++.+....|.++|+||++.|. |.+++. |+
T Consensus 143 l~~~i~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD-~a~a~~~~~~~l~~GaDi~v~S~tK~~~g~---~~ 218 (394)
T PRK07050 143 IADLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAID-NTYSAGLAFKPFEHGVDISVQALTKYQSGG---SD 218 (394)
T ss_pred HHHhcCCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEE-CCcccccccCHHHcCCeEEEEECCceecCC---CC
Confidence 777 8889999999998 78999999999999999999999994 45667777778889999999998 888531 22
Q ss_pred CcEEEEEE-chhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 368 PHAAFLAT-SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 368 P~~G~l~~-~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
.-.|.+.+ ++++.+++- ..|..-| +| ..+. ..|+...|.+.+..+
T Consensus 219 ~~gG~v~~~~~~~~~~~~-------------------------~~~~~~G---~~-~~~~-----~a~l~lr~l~tl~~R 264 (394)
T PRK07050 219 VLMGATITADAELHAKLK-------------------------LARMRLG---IG-VSAD-----DCSLVLRGLPSLQVR 264 (394)
T ss_pred eeEEEEEECCHHHHHHHH-------------------------HHHHhcC---CC-CCHH-----HHHHHHcCCCcHHHH
Confidence 21344444 455544430 0011111 01 0111 124455666677778
Q ss_pred HHHHHHHHHHHHHHHhcCCCeE
Q 001989 447 AQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
.++..+++.++.+.|++...+.
T Consensus 265 l~~~~~~a~~la~~L~~~p~v~ 286 (394)
T PRK07050 265 LAAHDRSALEVAEWLKARPEIA 286 (394)
T ss_pred HHHHHHHHHHHHHHHHhCCCcc
Confidence 8888899999999999874343
No 319
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=99.65 E-value=1.3e-14 Score=173.77 Aligned_cols=272 Identities=14% Similarity=0.105 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-- 288 (985)
..+.++|+.+|+++|++.+.+ +++|+|++..+++++.. ++||+||+++++|.|+...+. ..|++.+++++
T Consensus 195 G~i~eAe~~aA~~fgAd~tyf-vvNGTS~~n~av~~a~~---~~Gd~VLvdRN~HKSv~~aLi----lsga~PVYl~P~~ 266 (713)
T PRK15399 195 GPHLEAEEYIARTFGAEQSYI-VTNGTSTSNKIVGMYAA---PAGSTLLIDRNCHKSLAHLLM----MSDVVPIWLKPTR 266 (713)
T ss_pred hHHHHHHHHHHHHhCCCcEEE-EeCChHHHHHHHHHHhc---CCCCEEEeecccHHHHHHHHH----HcCCeeEEecccc
Confidence 568899999999999998765 66888888888888753 389999999999999998764 35888888743
Q ss_pred ----------------hhhhc-c--CCCE---eEEEEEcCCCCeeeccHHHHHHHHHhCCcEE-EEEecCcc-----ccC
Q 001989 289 ----------------KDIDY-K--SGDV---CGVLVQYPGTEGEVLDYGDFIKNAHANGVKV-VMATDLLA-----LTI 340 (985)
Q Consensus 289 ----------------~~l~~-l--~~~t---~~V~v~~pn~~G~v~di~~I~~~a~~~gall-iV~a~~~~-----lg~ 340 (985)
+.+++ + .++. +++++|+|||+|.+.|+++|++++ |+.+ +|| .+|. ...
T Consensus 267 n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTYdGi~yd~~~I~~~~---g~~~ilvD-EAhgah~~F~p~ 342 (713)
T PRK15399 267 NALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTYDGLLYNTDWIKQTL---DVPSIHFD-SAWVPYTHFHPI 342 (713)
T ss_pred cccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCCCceeeCHHHHHHHh---CCCEEEEe-ccchhhhhcCcc
Confidence 23333 3 2343 689999999999999999999999 6766 473 2221 111
Q ss_pred CC--CCCcc--cceEE---EecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccccccccc
Q 001989 341 LK--PPGEL--GADIV---VGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIR 412 (985)
Q Consensus 341 l~--~~~~~--GaDi~---v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~ir 412 (985)
+. .+-.. |+|.+ +.|. |.|++- + ++++++++.. + | +.|
T Consensus 343 ~~~~sam~~~~~aD~~i~~tQStHKtL~al-T----QaS~iHvk~~----v---------d----------------~~~ 388 (713)
T PRK15399 343 YQGKSGMSGERVPGKVIFETQSTHKMLAAF-S----QASLIHIKGE----Y---------D----------------EET 388 (713)
T ss_pred cCCcChhhCCCCCCeeeeeeeehhcccccc-c----hheeeeecCC----C---------C----------------HHH
Confidence 22 11112 68888 8888 666532 2 4577777532 1 0 000
Q ss_pred ccccCCCccchhHHHHHHHHHH--HHHhC-cchHHHHHHHHHHHHHHHHHHHhcCCC------eEEcCC-----------
Q 001989 413 RDKATSNICTAQALLANMAAMY--AVYHG-PEGLKTIAQRVHGLAGTFALGLKKLGT------VEVQGL----------- 472 (985)
Q Consensus 413 re~atsni~t~~~l~a~~aa~~--l~~~g-~~Gl~~i~~~~~~~a~~l~~~L~~~g~------~~~~~~----------- 472 (985)
.+.+-.-.-|+++.+.++|++- ..++. +.| +++.++..+.+..++++|.++++ |+++.+
T Consensus 389 ~n~a~~m~~STSPsY~LmASLD~a~~~m~~~~G-~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l 467 (713)
T PRK15399 389 FNEAFMMHTSTSPSYPIVASVETAAAMLRGNPG-KRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPV 467 (713)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceec
Confidence 1111112234578889999883 23333 344 56788888999999999988754 455421
Q ss_pred ----C------------Ccce--EEEecC-----------C--HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHH
Q 001989 473 ----P------------FFDT--VKVKCA-----------D--AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVD 521 (985)
Q Consensus 473 ----~------------~~~~--~~~~~~-----------~--~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId 521 (985)
. ..++ +++.++ + +..+.+.|+++||.++..+...+++.++..+|+++++
T Consensus 468 ~p~~~whgf~~~~~~~~~lDP~KltI~t~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~ 547 (713)
T PRK15399 468 APGEQWHGFKDADADHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAM 547 (713)
T ss_pred CCCcccccccccccccccCCCceEEEEecCcccccccccCCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHH
Confidence 0 1232 445443 3 7789999999999999888889999999999999999
Q ss_pred HHHHHHhC
Q 001989 522 KLFIVFAG 529 (985)
Q Consensus 522 ~li~aL~~ 529 (985)
+|+++|.+
T Consensus 548 ~L~~aL~~ 555 (713)
T PRK15399 548 GLLRGLTE 555 (713)
T ss_pred HHHHHHHH
Confidence 99999974
No 320
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=99.65 E-value=2.4e-14 Score=163.49 Aligned_cols=213 Identities=22% Similarity=0.194 Sum_probs=153.5
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---h
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---K 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~ 289 (985)
...+++.||+|.|.+. +.++++|.+|+.++++++. . +||+||+++..+......++.+...+|+++.++|. +
T Consensus 57 ~~~le~~la~Le~g~~--a~~~~SGmaAi~~~l~~ll-~--~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~ 131 (386)
T PF01053_consen 57 VRALEQRLAALEGGED--ALLFSSGMAAISAALLALL-K--PGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDPTDLE 131 (386)
T ss_dssp HHHHHHHHHHHHT-SE--EEEESSHHHHHHHHHHHHS----TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEESTTSHH
T ss_pred HHHHHHHHHHhhcccc--eeeccchHHHHHHHHHhhc-c--cCCceEecCCccCcchhhhhhhhcccCcEEEEeCchhHH
Confidence 3456789999999865 7788999999988887762 3 79999999999999999998878889999999987 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCC-cEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANG-VKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~g-alliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
++++ ++++|++|++..| |++..+.||++|+++||++| ++++|| +.++-+++..|-++||||++.|+ |.+++.
T Consensus 132 ~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVD-nT~atp~~~~pL~~GaDivv~S~TKyl~Gh--- 207 (386)
T PF01053_consen 132 ALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVD-NTFATPYNQNPLELGADIVVHSATKYLSGH--- 207 (386)
T ss_dssp HHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEE-CTTTHTTTC-GGGGT-SEEEEETTTTTTTS---
T ss_pred HHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEee-ccccceeeeccCcCCceEEEeeccccccCC---
Confidence 5666 8899999999998 89999999999999999999 999994 57777777888999999999998 777532
Q ss_pred CCCcEEEEEEch--hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchH
Q 001989 366 GGPHAAFLATSQ--EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGL 443 (985)
Q Consensus 366 GGP~~G~l~~~~--~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl 443 (985)
|.--+|.+.++. ++.+++- ..++.-| +. +...- .|+...|-+-+
T Consensus 208 sdv~~G~vv~~~~~~~~~~l~-------------------------~~~~~~G--~~-----~~p~d--a~ll~rgl~Tl 253 (386)
T PF01053_consen 208 SDVMGGAVVVNGSSELYDRLR-------------------------EFRRLLG--AT-----LSPFD--AWLLLRGLRTL 253 (386)
T ss_dssp SSE-EEEEEESSHHHHHHHHH-------------------------HHHHHHT---B-------HHH--HHHHHHHHTTH
T ss_pred cceeeEEEEECchhhhhhhhc-------------------------chhhhcC--cc-----chHHH--HHHHhcCCCcH
Confidence 222257777664 4443320 0011111 01 11111 23345555667
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeE
Q 001989 444 KTIAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 444 ~~i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
..+.++..++|..+++.|++...++
T Consensus 254 ~~R~~~~~~nA~~lA~~L~~hp~V~ 278 (386)
T PF01053_consen 254 PLRMERQNENAEALAEFLEEHPKVK 278 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 7778888999999999999985465
No 321
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=99.65 E-value=2.8e-14 Score=159.48 Aligned_cols=295 Identities=16% Similarity=0.194 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHC------------
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMC------------ 700 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~------------ 700 (985)
.-++.++++++++.-...-++|||++|+.+++..+|+| ++|++||. ...+||.+.......
T Consensus 95 Ei~~Aell~~~~p~~e~vrfvnSGTEAtmsAiRlARa~------TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s 168 (432)
T COG0001 95 EVELAELLIERVPSIEKVRFVNSGTEATMSAIRLARAY------TGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSS 168 (432)
T ss_pred HHHHHHHHHHhcCcccEEEEecchhHHHHHHHHHHHHh------hCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCC
Confidence 34677888888876333345789999998888888876 57788886 667899887664321
Q ss_pred -Cc------EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccc
Q 001989 701 -GM------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGAN 769 (985)
Q Consensus 701 -G~------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~ 769 (985)
|+ .+..+|.| |++++++++++..++.++|+++-. ...|++.| -+++|.++|+++|+++|.|++.
T Consensus 169 ~Gvp~~~a~~ti~~~yN-----D~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEVi 243 (432)
T COG0001 169 PGVPADVAKHTLVLPYN-----DLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVI 243 (432)
T ss_pred CCCChhhhccEEEecCC-----CHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecch
Confidence 11 35566775 999999999987789999998753 45788753 3899999999999999999875
Q ss_pred c---ccccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCC-ccccCCCCCCCCCCCCCCCCCCc
Q 001989 770 M---NAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSH-PVVSTGGIPAPEKSQPLGTIAAA 845 (985)
Q Consensus 770 ~---~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~-~~g~~~~~~~~~~~~~~~~i~s~ 845 (985)
. .+.+|...--..-+|+.+++ |.+ | ||--+|.+..++++++.+.+. .+. ..++
T Consensus 244 TGFR~~~gGaq~~~gi~PDlttlG--KiI----G-GGlP~ga~gGr~eiM~~~~p~g~vy----------------qaGT 300 (432)
T COG0001 244 TGFRVALGGAQGYYGVEPDLTTLG--KII----G-GGLPIGAFGGRAEIMEQLAPLGPVY----------------QAGT 300 (432)
T ss_pred hhcccCCcccccccCcCcchhhhh--hhh----c-CCcceeeeccHHHHHhhhCCCCCcc----------------ccCC
Confidence 2 11122111111236887543 555 4 455688888898888765321 111 1123
Q ss_pred chhhhHHHHHHHHHHHHhcH-HHHHHHHHHHHHHHHHHHHHhhc-----cCCeeecCCCCceeeEEEEEecCc-----cc
Q 001989 846 PWGSALILPISYTYIAMMGS-KGLTEASKIAILNANYMAKRLEK-----HYPILFRGVNGTVAHEFIVDLRGL-----KN 914 (985)
Q Consensus 846 ~~g~~~~~~~a~a~l~~lg~-eGl~~~~~~~~~~a~~l~~~L~~-----g~~l~~~~~~~~~~~~~iv~~~~~-----~~ 914 (985)
+.|+++.+++..+.+..+.. ++ ..++..+.++.|++.|++ ++.+..... +..+ .+-|... .+
T Consensus 301 ~sgnplamaAG~atl~~l~~~~~---~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~~-gsm~---~i~F~~~~~~n~~d 373 (432)
T COG0001 301 LSGNPLAMAAGLATLEELMTEEG---VYERLDALGERLAEGLRAAAERHGIPLTVNRV-GSMF---GIFFTEEGVRNYAD 373 (432)
T ss_pred CCCcHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHhCCCeEEeee-cceE---EEEecCCCCCCHHH
Confidence 45677777777888887765 34 233455666677776654 444433221 2222 2222210 00
Q ss_pred --cCCC-CHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 915 --TAGI-EPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 915 --~~g~-~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
..+. ....+.+.|.++|+++....+ +..- ++.-+|++|||+ +++++++++.++..
T Consensus 374 a~~sd~~~~~~~~~~~l~~GV~l~ps~~---ea~f--lS~ahte~di~~--~~~a~~~~~~~~~~ 431 (432)
T COG0001 374 AKRSDVERFAKFFHHLLNRGVYLAPSQF---EAGF--LSTAHTEEDIDR--TLEAADEAFKELAG 431 (432)
T ss_pred HHhhchHHHHHHHHHHHhCCcccCCccc---ccee--eecccCHHHHHH--HHHHHHHHHHHhhc
Confidence 0001 123455678889999865432 1222 344689999999 77888888877654
No 322
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.65 E-value=2.7e-14 Score=166.15 Aligned_cols=277 Identities=15% Similarity=0.127 Sum_probs=174.6
Q ss_pred HHHHH-HHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHH-hhcCCCeEEEEe--
Q 001989 211 ESLLN-FQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICIT-RADGFDIKVVVS-- 286 (985)
Q Consensus 211 ~~i~e-~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~-~a~~~gi~v~~v-- 286 (985)
+.+.+ .++.+++++|.+.+++.. .+||.++.+++.++ . ++||+|+++...|+++...+.. .++..|.+++.+
T Consensus 64 ~~l~~~~~~~~~~~~g~~~~~v~~-~sgt~a~~~~l~~l-~--~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 139 (402)
T cd00378 64 DEIEDLAIERAKKLFGAEYANVQP-HSGSQANLAVYFAL-L--EPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPY 139 (402)
T ss_pred HHHHHHHHHHHHHHhCCCceeeec-CCcHHHHHHHHHHh-c--CCCCEEEEecCccCccccccccccccccceeEEEecC
Confidence 44444 456788999998755533 45677777666555 2 3899999999999876554321 123356554443
Q ss_pred ---------Cchhhhc-c-CCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-----CCCCcccce
Q 001989 287 ---------DLKDIDY-K-SGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-----KPPGELGAD 350 (985)
Q Consensus 287 ---------~~~~l~~-l-~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-----~~~~~~GaD 350 (985)
|++++++ + .+++++|++.+|+ +|...|+++|+++||++|+++++|. .++.|.. ..+.. ++|
T Consensus 140 ~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~-~~~~~~~~~I~~l~~~~~~~li~D~-a~~~g~~~~g~~~~~~~-~~d 216 (402)
T cd00378 140 GVDPETGLIDYDALEKMALEFKPKLIVAGASA-YPRPIDFKRFREIADEVGAYLLVDM-AHVAGLVAGGVFPNPLP-GAD 216 (402)
T ss_pred CcCcccCCcCHHHHHHHHHhCCCCEEEecCcc-cCCCcCHHHHHHHHHhcCCEEEEEc-cchhhhhhcccCCCccc-CCc
Confidence 2344555 5 4578888877764 4778899999999999999999942 3233321 22233 789
Q ss_pred EEEecC-ccccccCCCCCCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHH
Q 001989 351 IVVGSA-QRFGVPMGYGGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLA 428 (985)
Q Consensus 351 i~v~s~-k~lg~P~~~GGP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a 428 (985)
++++|+ |+|+ ||.+|++.+++ ++.+.+.... .. + ..++++. ....+
T Consensus 217 v~~~s~sK~l~------G~~gg~i~~~~~~~~~~l~~~~---------~~-~-------------~~~~~~~---~~~~a 264 (402)
T cd00378 217 VVTTTTHKTLR------GPRGGLILTRKGELAKKINSAV---------FP-G-------------LQGGPHL---HVIAA 264 (402)
T ss_pred EEEeccccCCC------CCCceEEEeccHHHHHHHHHHh---------Cc-c-------------ccCCchH---HHHHH
Confidence 999998 7663 34456666665 6665541000 00 0 0011111 22222
Q ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC-CcceEEEecC--C--HHHHHHHHHHcCceeeee-
Q 001989 429 NMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-FFDTVKVKCA--D--AHAIASAAYKIEMNLRVV- 502 (985)
Q Consensus 429 ~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~~~~~~~~~--~--~~~v~~~L~~~GI~~~~~- 502 (985)
+..++ ......++++..++..++++++++.|++.| ++++..+ ....+.+.++ + ..++.+.|.++||.+...
T Consensus 265 ~~~al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~ 341 (402)
T cd00378 265 KAVAL--KEALEPEFKAYAKQVVENAKALAEALKERG-FKVVSGGTDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNT 341 (402)
T ss_pred HHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHhCC-CeEeecCCCCeEEEEeCCccCCCHHHHHHHHHHcCcEEcCCc
Confidence 22222 222223567888889999999999999987 8876322 2223445554 2 567777788889987521
Q ss_pred ---------cCCeEEEEeccCC----CHHHHHHHHHHHhC
Q 001989 503 ---------DSNTVTASFDETT----TLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ---------~~~~lris~t~~~----t~edId~li~aL~~ 529 (985)
.+..+|++++..+ +.+||+.+++.|..
T Consensus 342 ~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~ 381 (402)
T cd00378 342 LPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIAR 381 (402)
T ss_pred CCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHH
Confidence 2357999998865 79999999999975
No 323
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=99.65 E-value=1.9e-14 Score=165.31 Aligned_cols=212 Identities=17% Similarity=0.161 Sum_probs=152.4
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---h
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---K 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~ 289 (985)
..++++.+|++.|.+. +.++.+|++++.+++.. . ++||+||+++..|+.....+...++..|++++++|. +
T Consensus 52 ~~~Le~~la~l~g~~~--al~~~SG~~Al~~~l~~--l--~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~~d~e 125 (380)
T PRK06176 52 RFALEELIADLEGGVK--GFAFASGLAGIHAVFSL--F--QSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDTSDLS 125 (380)
T ss_pred HHHHHHHHHHHhCCCC--EEEECCHHHHHHHHHHH--c--CCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCCCCHH
Confidence 3457799999999876 56778888887754432 2 389999999999999888887777788999998875 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++++| |++|.+.|+++|+++||++|++++|| +.++.+....|.++|+|++++|+ |.+++|-.
T Consensus 126 ~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD-~t~a~~~~~~p~~~gaDivv~S~tK~l~g~~d-- 202 (380)
T PRK06176 126 QIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVD-NTFATPYYQNPLLLGADIVVHSGTKYLGGHSD-- 202 (380)
T ss_pred HHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEE-CCccccccCCccccCCCEEEecCceeccCCcc--
Confidence 5666 7889999999998 78999999999999999999999995 45555555567789999999998 77764421
Q ss_pred CCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHH
Q 001989 367 GPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 367 GP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~ 445 (985)
.-.|++.+++ ++.+++. ..++..|. .. ++. ..|+...|.+.+..
T Consensus 203 -~~gG~vv~~~~~~~~~~~-------------------------~~~~~~G~--~~--~~~-----~~~l~~~gl~tl~~ 247 (380)
T PRK06176 203 -VVAGLVTTNNEALAQEIA-------------------------FFQNAIGG--VL--GPQ-----DSWLLQRGIKTLGL 247 (380)
T ss_pred -ceeeEEEecHHHHHHHHH-------------------------HHHHHhcC--CC--CHH-----HHHHHHhccCcHHH
Confidence 1246777654 3333220 00011010 00 111 12344556667778
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeE
Q 001989 446 IAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
+.++..+++..+.+.|++...+.
T Consensus 248 R~~~~~~~a~~la~~L~~~p~v~ 270 (380)
T PRK06176 248 RMEAHQKNALCVAEFLEKHPKVE 270 (380)
T ss_pred HHHHHHHHHHHHHHHHHhCCCee
Confidence 88888899999999999874353
No 324
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=99.65 E-value=1.4e-14 Score=165.75 Aligned_cols=281 Identities=13% Similarity=0.105 Sum_probs=181.1
Q ss_pred HHHHHHHHHHhCCCcc-ceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 635 NNLGEWLCTITGFDSF-SLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~-~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
.++++.+++++|.+.. .+..++|++ +.. ++++.+. .++++|+++++.|..+...++..|++++.+|.+++
T Consensus 66 ~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~---~~~~~~~-----~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~ 137 (356)
T PRK04870 66 AALKAALRAAMGVPAGADVLLGNGSDELIQ---LLALACA-----KPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTAD 137 (356)
T ss_pred HHHHHHHHHHhCcCCCCcEEEcCCHHHHHH---HHHHHhc-----CCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCCC
Confidence 4678889999998653 555556655 332 2222221 46889999988776666667899999999999877
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccC--C-CCCCccCCcEEE
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG--L-TSPGYIGADVCH 788 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~--l-~~pg~~g~Di~~ 788 (985)
+.+|+++|++++.. .++++|++++| |++|.+. +.+++.++++..++++++|+++.. +.. + .......--+++
T Consensus 138 ~~~d~~~l~~~~~~--~~~~~v~l~~p~NPtG~~~-~~~~~~~i~~~~~~~ii~De~y~~-~~~~~~~~~~~~~~~vi~~ 213 (356)
T PRK04870 138 FTLDLPAMLAAIAE--HRPALVFLAYPNNPTGNLF-DDADVERIIEAAPGLVVVDEAYQP-FAGDSWLPRLARFPNLLVM 213 (356)
T ss_pred CCCCHHHHHHHhhc--CCCCEEEEcCCCCCCCCCC-CHHHHHHHHHHCCCEEEEECCchh-hcCcchHHHHhhCCCEEEE
Confidence 89999999999862 47889999998 5799998 788888888777899999998731 111 1 011122223667
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
.|++| ++. .|.++|++++++++.+.+.... ...+++ ..++ .++...+.. .+.+
T Consensus 214 ~S~SK-~~~----~GlRiG~~i~~~~~i~~~~~~~--------------~~~~~~--~~~q----~~a~~~l~~--~~~~ 266 (356)
T PRK04870 214 RTVSK-LGL----AGLRLGYLAGHPAWIAELDKVR--------------PPYNVN--VLTQ----ATALFALEH--VDVL 266 (356)
T ss_pred ecchh-hhh----HHHhhhhhhCCHHHHHHHHHcc--------------CCCcCC--HHHH----HHHHHHHhC--HHHH
Confidence 78888 644 3678999998876654432110 001111 1111 112222221 2335
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-CC-C-CCCEE
Q 001989 869 TEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-SW-P-VPGTL 945 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~-p-~~~~l 945 (985)
++..++..++++++.+.|++..++.+.++ +..+ +.+.++ +..++.+.|.++||.+... .+ + .++++
T Consensus 267 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~--~~~~~~--------~~~~~~~~l~~~gI~v~~~~~f~~~~~~~i 335 (356)
T PRK04870 267 DAQAAQLRAERTRLAAALAALPGVTVFPS-AANF--ILVRVP--------DAAAVFDGLKTRGVLVKNLSGMHPLLANCL 335 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcEECCC-CCeE--EEEECC--------CHHHHHHHHHHCCEEEEECCCCCCCCCCeE
Confidence 55566677788888888876223322222 2222 334432 4678899999999987542 22 1 35799
Q ss_pred EEeccCCCCHHHHHHHHccCChhHH
Q 001989 946 MIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 946 ris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
||++. +.+|+++ |+++|+++
T Consensus 336 Ris~~---~~~~~~~--l~~al~~~ 355 (356)
T PRK04870 336 RVTVG---TPEENAQ--FLAALKAA 355 (356)
T ss_pred EEeCC---CHHHHHH--HHHHHHHh
Confidence 99984 8999999 76777654
No 325
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=99.65 E-value=2.1e-14 Score=166.15 Aligned_cols=208 Identities=15% Similarity=0.198 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+.+.+ +++|+.++.+++++.. +++|+||+++..|+.+... +...|++++.++.
T Consensus 67 ~~~Le~~lA~l~G~~~~~~-~~sG~~Ai~~~l~~~l--------~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~ 137 (398)
T PRK07504 67 VDMFEKRMCALEGAEDARA-TASGMAAVTAAILCQV--------KAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDG 137 (398)
T ss_pred HHHHHHHHHHHhCCCeeeE-ecCHHHHHHHHHHHHh--------CCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECC
Confidence 4578899999999987654 5577776644443221 4789999988767654333 3457999988863
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+|+++++++++ ++|++|++++|+ ++|.+. |+++|+++|+++|++++||+++..+ .+..|..+|+|+++
T Consensus 138 -----~d~e~l~~ai~---~~tklV~lesp~NptG~v~-dl~~I~~la~~~gi~lvvD~a~a~~--~~~~~~~~gaDivv 206 (398)
T PRK07504 138 -----LDLDNWEKAVR---PNTKVFFLESPTNPTLEVI-DIAAVAKIANQAGAKLVVDNVFATP--LFQKPLELGAHIVV 206 (398)
T ss_pred -----CCHHHHHHhcC---cCceEEEEECCCCCCcEec-CHHHHHHHHHHcCCEEEEECCcccc--ccCCchhhCCCEEE
Confidence 69999999997 899999999995 699998 8999999999999999999998533 23456678999999
Q ss_pred eCCcccccccCCCCCCce-EEEEEcccccC-cCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 789 LNLHKTFCIPHGGGGPGM-GPIGVKKHLAP-FLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~-G~i~~~~~l~~-~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
.|+||+|+. .|.++ |+++.+++... .+.... + ..+...+ + ..||..+. +.+
T Consensus 207 ~S~sK~l~g----~g~~~GG~vv~~~~~i~~~~~~~~-----------~--~~g~~~s-----~---~~A~~~l~--~L~ 259 (398)
T PRK07504 207 YSATKHIDG----QGRCLGGVVLSDKAWIEEHLQDYF-----------R--HTGPSLS-----P---FNAWTLLK--GLE 259 (398)
T ss_pred eeccccccC----CccceEEEEEeCcHHHHHHHHHHH-----------H--HhCCCCC-----H---HHHHHHHh--ccc
Confidence 999999953 23434 57776655432 111000 0 0111111 1 12333333 334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 001989 867 GLTEASKIAILNANYMAKRLEK 888 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~ 888 (985)
.+..+.++..+++..+.+.|++
T Consensus 260 tl~~R~~~~~~na~~la~~L~~ 281 (398)
T PRK07504 260 TLPVRVRQQTESAAAIADFLAG 281 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHc
Confidence 5667777888999999999986
No 326
>PRK10534 L-threonine aldolase; Provisional
Probab=99.65 E-value=2.6e-15 Score=170.16 Aligned_cols=283 Identities=12% Similarity=0.121 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcc-cHHH-HHHC-CcEEEEEcCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGT-NPAT-AAMC-GMKIVSVGTD 710 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~-~~~~-a~~~-G~~vv~v~~d 710 (985)
..++++.+++++|.+... ..++|++++...+.+.. .++++|+++.+.|.. +... +... +++++.++++
T Consensus 36 ~~~L~~~la~~~g~~~~~-v~~~g~~a~~~~l~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (333)
T PRK10534 36 VNALQDYAAELSGKEAAL-FLPTGTQANLVALLSHC--------ERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAA 106 (333)
T ss_pred HHHHHHHHHHHhCCCeEE-EeCchHHHHHHHHHHhc--------CCCCeeEEechhhhhHhcCCchHHhcCceEEeecCC
Confidence 457889999999998764 44556666644444321 367888887766642 2111 2333 4788888887
Q ss_pred CCCCCCHHHHHHHHHhcC---CCEEEEEEEcCCCccccc--cCHHHHHHHHHHcCCEEEEEcccccccc-CCCCC-C--c
Q 001989 711 AKGNINIEELRKAAEANR---DNLSTLMVTYPSTHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQV-GLTSP-G--Y 781 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~~---~~t~~Vvv~~pn~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~-~l~~p-g--~ 781 (985)
.++.+|+++|+++++... .++++|++++|++ |.+. .++++|.++|+++|+++++|+|+..... ..... . .
T Consensus 107 ~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~~-G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~ 185 (333)
T PRK10534 107 ADGTLPLDKVAAKIKPDDIHFARTRLLSLENTHN-GKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEIT 185 (333)
T ss_pred CCCCCCHHHHHHhhcccCcCcccceEEEEecCCC-CeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHH
Confidence 789999999999996210 1688999999874 8876 1345566788999999999998642110 00111 0 1
Q ss_pred cCCcEEEeCCcccccccCCCCCCceE-EEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMG-PIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G-~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
...|.++.+++|.|+++ +| +++.++++...+.... .....++.. .+...+++.+.+
T Consensus 186 ~~~~~~~~s~SK~~~~~-------~G~~~~~~~~~i~~~~~~~------------~~~~~~~~~----~~~~~a~~~~~l 242 (333)
T PRK10534 186 QYCDSFTICLSKGLGTP-------VGSLLVGNRDYIKRARRWR------------KMTGGGMRQ----AGILAAAGLYAL 242 (333)
T ss_pred hcCCEEEEEeEcCCCCc-------ccceEEcCHHHHHHHHHHH------------HHhCCchhh----HHHHHHHHHHHH
Confidence 13476666788987543 34 5666776655442110 000001110 111112222222
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC
Q 001989 861 AMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 861 ~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~ 939 (985)
.. ..+..++..++++++.++|++ ++++. .+ .. +-+.++++ +.+..++.+.|.++||.+...
T Consensus 243 ~~-----~~~~~~~~~~~r~~l~~~L~~~g~~~~--~~-~~--nfv~~~~~------~~~~~~~~~~l~~~gi~v~~~-- 304 (333)
T PRK10534 243 KH-----NVARLQEDHDNAAWLAEQLREAGADVM--RQ-DT--NMLFVRVG------EEQAAALGEYMRERNVLINAS-- 304 (333)
T ss_pred Hh-----hHHHHHHHHHHHHHHHHHHHhCCCccC--CC-Cc--eEEEEECC------chhHHHHHHHHHHcCeeecCC--
Confidence 21 123333455567899999987 55542 22 12 22334543 124678889999999998532
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 940 PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 940 p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
..+|++.+..+|+||+++ +++.|++.+.
T Consensus 305 ---~~~rl~~~~r~t~e~~~~--~~~~l~~~~~ 332 (333)
T PRK10534 305 ---PIVRLVTHLDVSREQLAE--VVAHWRAFLA 332 (333)
T ss_pred ---ceEEEEEEeCCCHHHHHH--HHHHHHHHhc
Confidence 257888876789999999 7777775543
No 327
>PRK07337 aminotransferase; Validated
Probab=99.65 E-value=2e-14 Score=166.56 Aligned_cols=302 Identities=13% Similarity=0.120 Sum_probs=179.4
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+.+.+++.+..|. +...+.. +++++|... ++..+. .++|+|+++++.|+.+...++..|.++
T Consensus 67 ~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~---~~~~l~-----~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 138 (388)
T PRK07337 67 LGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLL---ACLALV-----ERGDEVLMPDPSYPCNRHFVAAAEGRP 138 (388)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHH---HHHHhc-----CCCCEEEEeCCCchhhHHHHHHcCCEE
Confidence 56656665666666655565 3344444 344444432 222221 468899999998888777778889999
Q ss_pred EEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccc-cccC-CC
Q 001989 705 VSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMN-AQVG-LT 777 (985)
Q Consensus 705 v~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~-~~~~-l~ 777 (985)
+.+|.+. ++.+|+++++++++ +++++|++++| |++|.+. .++++|+++|+++|+++++|.++.. .... ..
T Consensus 139 ~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~ 215 (388)
T PRK07337 139 VLVPSGPAERFQLTAADVEAAWG---ERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPV 215 (388)
T ss_pred EEeecCCccCCcCCHHHHHhhcC---ccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCc
Confidence 9999864 36899999999997 78999999999 5799875 2588999999999999999988631 1111 01
Q ss_pred CCCccCCcE-EEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHH
Q 001989 778 SPGYIGADV-CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 778 ~pg~~g~Di-~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a 856 (985)
....++.++ ++.|++|.|+.| |.++|++++++++.+.+.... .....+.+ ..++. ++
T Consensus 216 ~~~~~~~~vi~~~S~SK~~~~~----G~RiG~~~~~~~l~~~l~~~~------------~~~~~~~s--~~~q~----~~ 273 (388)
T PRK07337 216 SALSLGDDVITINSFSKYFNMT----GWRLGWLVVPEALVGTFEKLA------------QNLFICAS--ALAQH----AA 273 (388)
T ss_pred ChhhccCCEEEEEechhhcCCc----hhheeeeecCHHHHHHHHHHH------------HHhccCCC--hHHHH----HH
Confidence 112234455 466889988544 678999998876654432110 00000111 11111 11
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH-HHCCCcc
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL-MDYGFHG 934 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L-~~~Gi~~ 934 (985)
..++..-..+.+++..+...++++++.+.|++ +..+.. .+.+..+ +.++++........+..+++++| .++||.+
T Consensus 274 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~-~p~~g~f--~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v 350 (388)
T PRK07337 274 LACFEPDTLAIYERRRAEFKRRRDFIVPALESLGFKVPV-MPDGAFY--VYADCRGVAHPAAGDSAALTQAMLHDAGVVL 350 (388)
T ss_pred HHHhccCchHHHHHHHHHHHHHHHHHHHHHHhcCCcccc-CCCeeEE--EEEecccccCCCCCCHHHHHHHHHHhCCEEE
Confidence 12221111123444455566778888888876 333211 1222222 34555421100124677888775 5679987
Q ss_pred CCC-CCC---CCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 935 PTM-SWP---VPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 935 ~~~-~~p---~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
... .|. ..+++||++.. +.++++. .++.|.+
T Consensus 351 ~pg~~f~~~~~~~~~Ri~~~~--~~~~l~~--~l~rl~~ 385 (388)
T PRK07337 351 VPGRDFGPHAPRDYIRLSYAT--SMSRLEE--AVARLGK 385 (388)
T ss_pred eCchhhCCCCCCCEEEEEecC--CHHHHHH--HHHHHHH
Confidence 431 121 24799999975 5677766 4444443
No 328
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=99.65 E-value=2.8e-14 Score=164.71 Aligned_cols=211 Identities=20% Similarity=0.199 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+.+ +.+++|+.|+..++.++. .++++||++...|+.... .+...|++++.++.
T Consensus 61 ~~~le~~lA~l~g~~~a-v~~~sG~~Ai~~~l~al~--------~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~ 131 (391)
T TIGR01328 61 VSNLEGRIAFLEGTEAA-VATSSGMGAIAATLLTIL--------KAGDHLISDECLYGCTFALLEHALTKFGIQVDFINM 131 (391)
T ss_pred HHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECC
Confidence 45789999999998874 566778877654443331 367899998877764332 24568999999987
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++..+ .+..|...++|+++
T Consensus 132 ~-----d~e~l~~~i~---~~tklV~le~p~Np~G~v~-dl~~I~~la~~~gi~livD~a~a~~--~~~~~~~~g~Divv 200 (391)
T TIGR01328 132 A-----IPEEVKAHIK---DNTKIVYFETPANPTMKLI-DMERVCRDAHSQGVKVIVDNTFATP--MLTNPVALGVDVVV 200 (391)
T ss_pred C-----CHHHHHHhhc---cCCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEECCCchh--ccCCchhcCCCEEE
Confidence 4 8999999997 78999999999 4689987 8999999999999999999998532 23456677999999
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
.|++|+|+.+ |++.+|+++.++++...+... +. + ...+...+ + ..+|..+. +.+.+
T Consensus 201 ~S~sK~lgg~---g~~~gG~v~~~~~li~~l~~~--~~--------~-~~~g~~l~-----~---~~a~l~l~--~L~tl 256 (391)
T TIGR01328 201 HSATKYIGGH---GDVVAGLICGKAELLQQIRMV--GI--------K-DMTGSVIS-----P---FDAWLILR--GLKTL 256 (391)
T ss_pred ccccccccCC---CCceEEEEEcCHHHHHHHHHH--HH--------H-hCCCCCCC-----c---HHHHHHHh--CcCcH
Confidence 9999998532 233478888877665443210 00 0 00111111 1 11233333 33445
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 001989 869 TEASKIAILNANYMAKRLEK 888 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~ 888 (985)
..+.++..+++.++.+.|++
T Consensus 257 ~~r~~~~~~na~~la~~L~~ 276 (391)
T TIGR01328 257 NIRMKRHSENAMKVAEYLKS 276 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 66677888999999999986
No 329
>PLN02509 cystathionine beta-lyase
Probab=99.65 E-value=1.8e-14 Score=168.15 Aligned_cols=212 Identities=18% Similarity=0.183 Sum_probs=151.3
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---h
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---K 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~ 289 (985)
..++++.+|++.|.+. +.++.+|++++.++. ++ . ++||+||+++..|+.+...++......|+++++++. +
T Consensus 135 ~~aLE~~lA~leg~e~--ai~~~SG~aAi~~il-~l-l--~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd~~d~e 208 (464)
T PLN02509 135 RDALESLLAKLDKADR--AFCFTSGMAALSAVT-HL-I--KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTNLD 208 (464)
T ss_pred HHHHHHHHHHHhCCCE--EEEeCcHHHHHHHHH-HH-h--CCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeCCCCHH
Confidence 4567789999998765 566778887664433 32 2 389999999999999887776655678999998865 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+.+..|.++|+|++++|+ |++++| |
T Consensus 209 ~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD-~A~a~~~~~~pl~~gaDivv~S~tK~l~G~---g 284 (464)
T PLN02509 209 EVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVD-NSIMSPVLSRPLELGADIVMHSATKFIAGH---S 284 (464)
T ss_pred HHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEE-CCccccccCChhhcCCcEEEecCcccccCC---C
Confidence 5666 7889999999998 78999999999999999999999994 45666666677789999999998 877643 3
Q ss_pred CCcEEEEEEchhhH-hcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHH
Q 001989 367 GPHAAFLATSQEYK-RMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 367 GP~~G~l~~~~~~~-~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~ 445 (985)
+..+|+++++++.+ +.+ + ..++..++ .+....| |+...+-+-+..
T Consensus 285 dv~gG~v~~~~~~l~~~~----------------~---------~~~~~~g~-------~l~p~~A--~l~lr~L~tL~~ 330 (464)
T PLN02509 285 DVMAGVLAVKGEKLAKEV----------------Y---------FLQNSEGS-------GLAPFDC--WLCLRGIKTMAL 330 (464)
T ss_pred ccceeEEEeccHHHHHHH----------------H---------HHHHhcCC-------CcCHHHH--HHHHhhhhhHHH
Confidence 33468888765432 111 0 00011111 0111112 224444555667
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeE
Q 001989 446 IAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
+.++..+++.++.+.|++...++
T Consensus 331 R~~r~~~nA~~la~~L~~~p~V~ 353 (464)
T PLN02509 331 RIEKQQENARKIAMYLSSHPRVK 353 (464)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcc
Confidence 77888999999999999875454
No 330
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=99.65 E-value=6.6e-15 Score=176.41 Aligned_cols=274 Identities=13% Similarity=0.091 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-- 288 (985)
..+.|+|+.+|+++|++.+.+ +++|+|++..+++++.. ++||+||+++++|.|+...+. ..|++.+++++
T Consensus 195 G~i~eAe~~AA~~fgAd~tyf-vvNGTS~~n~av~~a~~---~~Gd~VLvdRN~HKSv~haLi----lsga~PVYl~P~r 266 (714)
T PRK15400 195 GPHKEAEEYIARVFNADRSYM-VTNGTSTANKIVGMYSA---PAGSTVLIDRNCHKSLTHLMM----MSDVTPIYFRPTR 266 (714)
T ss_pred hHHHHHHHHHHHHhCCCcEEE-EeCchHHHHHHHHHHhc---CCCCEEEeecccHHHHHHHHH----HcCCeEEEecccc
Confidence 567899999999999998765 66788888888888753 389999999999999998764 35888888743
Q ss_pred ----------------hhhhc-c--CCCEe---EEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEE----ecCccccCCC
Q 001989 289 ----------------KDIDY-K--SGDVC---GVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMA----TDLLALTILK 342 (985)
Q Consensus 289 ----------------~~l~~-l--~~~t~---~V~v~~pn~~G~v~di~~I~~~a~~~galliV~----a~~~~lg~l~ 342 (985)
+.+++ + .++.+ .+++|+|||+|.+.|+++|++++|.++ ++|| ++......++
T Consensus 267 n~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~ 344 (714)
T PRK15400 267 NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYE 344 (714)
T ss_pred cccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCCCccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccC
Confidence 23333 3 33444 799999999999999999999999988 4673 2211112221
Q ss_pred --CCCcccc---e--EEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccccccccccc
Q 001989 343 --PPGELGA---D--IVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRD 414 (985)
Q Consensus 343 --~~~~~Ga---D--i~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre 414 (985)
.+-..|+ | +++.|. |.|++- + ++++++++.. + | +.|.+
T Consensus 345 ~~sam~~ga~~~~~i~vtQStHKtL~al-T----QaS~LHvkg~----v---------d----------------~~~~n 390 (714)
T PRK15400 345 GKCGMSGGRVEGKVIYETQSTHKLLAAF-S----QASMIHVKGD----V---------N----------------EETFN 390 (714)
T ss_pred CcChhhcCCCCCCceEEEEchhhcccch-h----HHhHHHHcCC----C---------C----------------HHHHH
Confidence 2334677 5 999999 666431 1 2344443221 1 1 00111
Q ss_pred ccCCCccchhHHHHHHHHHH--HHHhC-cchHHHHHHHHHHHHHHHHHHHhcCCC------eEEcCCC------------
Q 001989 415 KATSNICTAQALLANMAAMY--AVYHG-PEGLKTIAQRVHGLAGTFALGLKKLGT------VEVQGLP------------ 473 (985)
Q Consensus 415 ~atsni~t~~~l~a~~aa~~--l~~~g-~~Gl~~i~~~~~~~a~~l~~~L~~~g~------~~~~~~~------------ 473 (985)
.+-.-.-|+++.+.++|++- ..++. +.| +++.++..+.+..++++|.++.+ ++++.+.
T Consensus 391 ~a~~m~~STSPsY~l~ASLD~a~~~m~~~~G-~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p 469 (714)
T PRK15400 391 EAYMMHTTTSPHYGIVASTETAAAMMKGNAG-KRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRS 469 (714)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCc
Confidence 11122235578889999883 23333 234 66788888999999999988765 5655210
Q ss_pred ---------------Ccce--EEEecC-----------C--HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHH
Q 001989 474 ---------------FFDT--VKVKCA-----------D--AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKL 523 (985)
Q Consensus 474 ---------------~~~~--~~~~~~-----------~--~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~l 523 (985)
..++ +++.++ + +..+.+.|.++||.++..+...+++.++..+|++++++|
T Consensus 470 ~~~whgf~~~~~~~~~lDP~Klti~tpgi~~~g~~~~~Gipg~~v~~~L~e~gI~~E~~d~~~iLfl~s~g~t~~~~~~L 549 (714)
T PRK15400 470 DSTWHGFKNIDNEHMYLDPIKVTLLTPGMKKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSL 549 (714)
T ss_pred cccccCcccccccccccCCceEEEEeCCCCCCccccccCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHH
Confidence 1132 444442 2 678899999999999988888999999999999999999
Q ss_pred HHHHhC
Q 001989 524 FIVFAG 529 (985)
Q Consensus 524 i~aL~~ 529 (985)
+++|.+
T Consensus 550 ~~aL~~ 555 (714)
T PRK15400 550 LRALTD 555 (714)
T ss_pred HHHHHH
Confidence 999974
No 331
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=99.65 E-value=2.5e-15 Score=172.27 Aligned_cols=284 Identities=18% Similarity=0.185 Sum_probs=181.5
Q ss_pred HHHHHHHHHhC------CCcc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 636 NLGEWLCTITG------FDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 636 e~~~~la~l~G------~~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
++++.++++++ .+.. .+..++|+++....+..+.. ..++++|+++++.|..+...++..|++++.+|
T Consensus 48 ~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~------~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~ 121 (363)
T PF00155_consen 48 ELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLK------INPGDTVLVPDPCYPSYIEAARLLGAEVIPVP 121 (363)
T ss_dssp HHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHH------SSTTSEEEEEESSSTHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhccc------ccccccceecCCccccccccccccCceeeecc
Confidence 55666666666 4455 67777787644333222211 13678999999988888888999999999999
Q ss_pred CC--CCCCCCHHHHHHHHHhcC-C--CEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccccCCCC--
Q 001989 709 TD--AKGNINIEELRKAAEANR-D--NLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVGLTS-- 778 (985)
Q Consensus 709 ~d--~~g~iD~e~L~~~i~~~~-~--~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~~l~~-- 778 (985)
++ .++.+|+++|++.+++.+ + ++++|++++| |++|..- +++++|+++|+++|+++++|.++.....+-..
T Consensus 122 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~ 201 (363)
T PF00155_consen 122 LDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFG 201 (363)
T ss_dssp EEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTH
T ss_pred ccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccC
Confidence 64 467899999999998421 1 5789999999 4799875 24666666699999999999998422211000
Q ss_pred ---C-CccCCc-EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 779 ---P-GYIGAD-VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 779 ---p-g~~g~D-i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
. ...+.+ +++.|++|.|+.| |.++|++++++++.+.+..... ....+ + .++.
T Consensus 202 ~~~~~~~~~~~vi~~~S~SK~~g~~----GlRvG~i~~~~~~~~~l~~~~~--------------~~~~~-~-~~~~--- 258 (363)
T PF00155_consen 202 PIRSLLDEDDNVIVVGSLSKSFGLP----GLRVGYIVAPPELIERLRRFQR--------------SGLSS-S-PMQA--- 258 (363)
T ss_dssp HHHGHHTTTSTEEEEEESTTTTTSG----GGTEEEEEEEHHHHHHHHHHHH--------------HTTSS-H-HHHH---
T ss_pred cccccccccccceeeeecccccccc----ccccccccchhhhhhhhhhccc--------------ccccc-c-hhhH---
Confidence 0 011234 7788888988554 6779999998766655431100 00111 1 1111
Q ss_pred HHHHHHHHHhcH--HHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC
Q 001989 854 PISYTYIAMMGS--KGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY 930 (985)
Q Consensus 854 ~~a~a~l~~lg~--eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~ 930 (985)
.+...+..-+. +-+++..++..++++++.+.|++ ++.+. .++ +..+ +.+..+ ..+..++.+.|.++
T Consensus 259 -~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~-~~~-~~~~--~~~~~~------~~~~~~l~~~L~~~ 327 (363)
T PF00155_consen 259 -AAAAALSDPELVEKWLEELRERLRENRDLLREALEEIGITVL-PPE-AGFF--LWVRLD------PNDAEELAQELLEE 327 (363)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEE-HHS-BSSE--EEEEES------HHHHHHHHHHHHHH
T ss_pred -HHHHhhhcccccccccccchhhHHHHHHHHHHHHHHhhhhee-ecc-CccE--EEEEcc------cchHHHHHHHHHHh
Confidence 11122222221 14456666778888999999976 44442 221 2222 233333 11467899999998
Q ss_pred -CCccCCC-CCCCCCEEEEeccCCCCHHHHHH
Q 001989 931 -GFHGPTM-SWPVPGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 931 -Gi~~~~~-~~p~~~~lris~t~~~t~eeId~ 960 (985)
||.+... .+..++++||++ ...++|++++
T Consensus 328 ~gi~v~pg~~~~~~~~iRi~~-a~~~~e~~~~ 358 (363)
T PF00155_consen 328 YGILVRPGSYFGVPGYIRISL-ASHSEEDLEE 358 (363)
T ss_dssp HTEEEEEGGGGTSTTEEEEEG-GCSCHHHHHH
T ss_pred CCEEEEecCCCCCCCEEEEEe-ccCCHHHHHH
Confidence 9986542 233468999999 8899999999
No 332
>PLN02242 methionine gamma-lyase
Probab=99.65 E-value=1.1e-14 Score=169.19 Aligned_cols=220 Identities=18% Similarity=0.192 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH-----HHCCcEEEEEc
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA-----AMCGMKIVSVG 708 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a-----~~~G~~vv~v~ 708 (985)
.+++++.+++++|.+.+. .++||++|+.++++++. +++|+||++...++.+.... +..|++++.++
T Consensus 78 ~~~LE~~lA~l~g~~~~l-~~~sG~~Ai~~al~al~--------~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d 148 (418)
T PLN02242 78 VLNLGRQMAALEGTEAAY-CTASGMSAISSVLLQLC--------SSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVD 148 (418)
T ss_pred HHHHHHHHHHHhCCCeEE-EEccHHHHHHHHHHHHh--------CCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcC
Confidence 458899999999998764 45778887765555442 37899999887665554432 34788888777
Q ss_pred CCCCCCCCHHHHHHHHHhcCC-CEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcE
Q 001989 709 TDAKGNINIEELRKAAEANRD-NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADV 786 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~-~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di 786 (985)
.+ |+++++++++ + +|++|++++| |++|.+. |+++|+++||++|+++++|.++. .. ...+..+|+|+
T Consensus 149 ~~-----d~e~l~~~i~---~~~tklV~lesp~NPtG~v~-dl~~I~~la~~~gi~livDea~~--~~-~~~~~~~g~di 216 (418)
T PLN02242 149 IT-----DLEAVKKAVV---PGKTKVLYFESISNPTLTVA-DIPELARIAHEKGVTVVVDNTFA--PM-VLSPARLGADV 216 (418)
T ss_pred CC-----CHHHHHHhcC---cCCCEEEEEecCCCCCCccc-CHHHHHHHHHHhCCEEEEECCCC--cc-CCCHHHcCCcE
Confidence 63 8999999997 6 4999999998 5799998 89999999999999999999874 12 23556678999
Q ss_pred EEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
++.|++|+|+.+ |...+|++++++++...+.....+ +....+.. .....||.. ..+.+
T Consensus 217 vv~S~SK~l~g~---g~~~gG~iv~~~~li~~l~~~~~~---------~~~~~g~~--------~~~~~A~l~--~~~l~ 274 (418)
T PLN02242 217 VVHSISKFISGG---ADIIAGAVCGPAELVNSMMDLHHG---------ALMLLGPT--------MNPKVAFEL--SERLP 274 (418)
T ss_pred EEEeCccccCCC---CCceEEEEEcCHHHHHHHHHHhhh---------hhhccCCC--------CCHHHHHHH--HcCCC
Confidence 999999998532 222368888887665443211000 00001111 111223333 33444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-cCCeeecC
Q 001989 867 GLTEASKIAILNANYMAKRLEK-HYPILFRG 896 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~ 896 (985)
.+..+.++..++++++++.|++ ++.+.+++
T Consensus 275 tl~~r~~~~~~~a~~la~~L~~~~~~V~yP~ 305 (418)
T PLN02242 275 HLSLRMKEHCRRAMEYAKRMKELGLKVIYPG 305 (418)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCEEECCC
Confidence 5666677888999999999987 45565544
No 333
>PRK06767 methionine gamma-lyase; Provisional
Probab=99.65 E-value=6.2e-15 Score=170.13 Aligned_cols=211 Identities=16% Similarity=0.092 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+. .+.+++|+.|+.+++.++. .++++||+++..|+..... +...|+++..++.
T Consensus 63 ~~~Le~~lA~l~G~~~-al~~~sG~~Ai~~~l~al~--------~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~ 133 (386)
T PRK06767 63 VKLFEERMAVLEGGEE-ALAFGSGMAAISATLIGFL--------KAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDM 133 (386)
T ss_pred hHHHHHHHHHHhCCCc-EEEECCHHHHHHHHHHHHh--------CCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCC
Confidence 3478899999999865 4556778776644444332 3788999988777654333 2345777777765
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
.|+++++++++ ++|++|++++| |++|.+. |+++|.++||++|+++++|+++.. +.+..|...|+|+++
T Consensus 134 -----~d~~~l~~~i~---~~tklV~lesp~NptG~v~-dl~~I~~la~~~g~~vivD~a~a~--~~~~~pl~~g~Div~ 202 (386)
T PRK06767 134 -----ETEADIENKIR---PNTKLIFVETPINPTMKLI-DLKQVIRVAKRNGLLVIVDNTFCS--PYLQRPLELGCDAVV 202 (386)
T ss_pred -----CCHHHHHHhhC---cCceEEEEeCCCCCCceec-CHHHHHHHHHHcCCEEEEECCCcc--cccCCchhcCCcEEE
Confidence 38999999997 78999999999 4699998 899999999999999999999742 223456678999999
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
.|++|+|+.+ |.+.+|+++++++.+..+..... ...+...+ + ..+|..+..+ +.+
T Consensus 203 ~S~sK~l~g~---g~~~gG~v~~~~~~i~~~~~~~~------------~~~g~~~~-----~---~~a~l~~~~L--~tl 257 (386)
T PRK06767 203 HSATKYIGGH---GDVVAGVTICKTRALAEKIRPMR------------KDIGGIMA-----P---FDAWLLLRGL--KTL 257 (386)
T ss_pred ecCcceecCC---CCceeEEEEeChHHHHHHHHHHH------------HHhCCCCC-----H---HHHHHHHcCC--CcH
Confidence 9999998522 22336899888765433211000 00111111 1 1133444433 334
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 001989 869 TEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g 889 (985)
..+.++..+++.++++.|++.
T Consensus 258 ~~r~~~~~~~a~~la~~L~~~ 278 (386)
T PRK06767 258 AVRMDRHCDNAEKIVSFLKNH 278 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 556677889999999999874
No 334
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=99.65 E-value=3.4e-14 Score=166.06 Aligned_cols=272 Identities=14% Similarity=0.126 Sum_probs=173.5
Q ss_pred HHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHH-hhcCCCeEEEEeCc------
Q 001989 216 FQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICIT-RADGFDIKVVVSDL------ 288 (985)
Q Consensus 216 ~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~-~a~~~gi~v~~v~~------ 288 (985)
++..+++++|.+.+++.+ .+||.++++++.++ . ++||+|+++...|+++...+.. .....|++++.++.
T Consensus 76 ~~~~la~~~g~~~~~i~~-~sgt~al~~~l~~l-~--~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 151 (416)
T PRK00011 76 AIDRAKELFGAEYANVQP-HSGSQANAAVYFAL-L--KPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGL 151 (416)
T ss_pred HHHHHHHHhCCCceeeec-CCchHHHHHHHHHh-c--CCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCC
Confidence 456899999998866543 45677766655554 3 3899999999999875433211 11234666666543
Q ss_pred ---hhhhc-cC-CCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-----CCCCcccceEEEecC-c
Q 001989 289 ---KDIDY-KS-GDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-----KPPGELGADIVVGSA-Q 357 (985)
Q Consensus 289 ---~~l~~-l~-~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-----~~~~~~GaDi~v~s~-k 357 (985)
+++++ +. .++++|++..+ .+|...|+++|+++||++|+++++|+ .++.|.. ..+-. ++|++++|+ |
T Consensus 152 ~d~~~l~~~i~~~~~k~v~~~~~-~~~~~~~~~~I~~la~~~~~~livD~-a~~~g~~~~g~~~~~~~-~~di~~~S~~K 228 (416)
T PRK00011 152 IDYDEVEKLALEHKPKLIIAGAS-AYSRPIDFKRFREIADEVGAYLMVDM-AHIAGLVAAGVHPSPVP-HADVVTTTTHK 228 (416)
T ss_pred cCHHHHHHHHHhcCCCEEEECCC-cCCCccCHHHHHHHHHHcCCEEEEEC-cchhcccccCccCCCCC-CCcEEEecCCc
Confidence 45555 54 37888887654 45777899999999999999999943 2333322 12233 789999998 6
Q ss_pred cccccCCCCCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHH
Q 001989 358 RFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAV 436 (985)
Q Consensus 358 ~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~ 436 (985)
+|+ ||.+|++.++ +++.+++.... .. + ..+++. .....++.++. .
T Consensus 229 ~l~------g~~gg~i~~~~~~~~~~l~~~~---------~~-~-------------~~~~~~---~~~~aa~~~a~--~ 274 (416)
T PRK00011 229 TLR------GPRGGLILTNDEELAKKINSAV---------FP-G-------------IQGGPL---MHVIAAKAVAF--K 274 (416)
T ss_pred CCC------CCCceEEEeCCHHHHHHHHHHh---------Cc-c-------------ccCCcc---HHHHHHHHHHH--H
Confidence 563 3445677774 56665541000 00 0 001111 11222222222 2
Q ss_pred HhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC-CCCcceEEEecC----CHHHHHHHHHHcCceeee----e-----
Q 001989 437 YHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG-LPFFDTVKVKCA----DAHAIASAAYKIEMNLRV----V----- 502 (985)
Q Consensus 437 ~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~----~~~~v~~~L~~~GI~~~~----~----- 502 (985)
....++++++.++..++++++++.|++.| +++.. ....+.+.+..+ ...++.+.|.++||.++. .
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~ 353 (416)
T PRK00011 275 EALEPEFKEYAQQVVKNAKALAEALAERG-FRVVSGGTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDPRSP 353 (416)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhCC-CeeeecCCCCeEEEEeCcccCCCHHHHHHHHHHcCcEEccCcCCCCCCCC
Confidence 22345788899999999999999999987 88753 222233445443 267888999999998752 1
Q ss_pred -cCCeEEEEecc----CCCHHHHHHHHHHHhC
Q 001989 503 -DSNTVTASFDE----TTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -~~~~lris~t~----~~t~edId~li~aL~~ 529 (985)
.+..+|++.+. ..|++|+++++++|..
T Consensus 354 ~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~ 385 (416)
T PRK00011 354 FVTSGIRIGTPAITTRGFKEAEMKEIAELIAD 385 (416)
T ss_pred CCCCceEecCHHHhhcCcCHHHHHHHHHHHHH
Confidence 13568987644 4579999999999974
No 335
>PLN02656 tyrosine transaminase
Probab=99.65 E-value=3.1e-14 Score=166.00 Aligned_cols=306 Identities=13% Similarity=0.059 Sum_probs=180.5
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+.+.+++....|. +...+.. +++++|... +++.+. .++|+|+++++.|+.+...++..|+++
T Consensus 73 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~---~~~~l~-----~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 144 (409)
T PLN02656 73 VGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDV---ALSMLA-----RPGANILLPRPGFPIYELCAAFRHLEV 144 (409)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHH---HHHHHh-----CCCCeEEEeCCCCCcHHHHHHHcCCEE
Confidence 56555555555555544443 3344444 444445433 333321 378899999998877777778899999
Q ss_pred EEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEcccccc-ccCCC-
Q 001989 705 VSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNA-QVGLT- 777 (985)
Q Consensus 705 v~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~-~~~l~- 777 (985)
+.+|+++ ++.+|+++++++++ +++++|++++|+ ++|.+. .++++|+++|+++|+++++|+++..- ..+-.
T Consensus 145 ~~i~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~ 221 (409)
T PLN02656 145 RYVDLLPEKGWEVDLDAVEALAD---QNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPF 221 (409)
T ss_pred EEEeCCCcCCCCCCHHHHHHHhc---cCceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCc
Confidence 9999853 35799999999987 788999999994 799883 26999999999999999999987411 11100
Q ss_pred CC-Ccc---CCcEEEeCCcccccccCCCCCCceEEEEEcc--------cccCcCCCCccccCCCCCCCCCCCCCCCCCCc
Q 001989 778 SP-GYI---GADVCHLNLHKTFCIPHGGGGPGMGPIGVKK--------HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAA 845 (985)
Q Consensus 778 ~p-g~~---g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~--------~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~ 845 (985)
.+ ..+ ..=+++.|+.|+|++| |.++|++++.+ ++...+... .. ....++
T Consensus 222 ~~~~~~~~~~~vi~~~SfSK~f~~p----GlRiG~~i~~~~~~~~~~~~~~~~~~~~------------~~-~~~~~s-- 282 (409)
T PLN02656 222 VPMGVFGSIVPVLTLGSLSKRWIVP----GWRLGWFVTTDPSGSFRDPKIVERIKKY------------FD-ILGGPA-- 282 (409)
T ss_pred ccHHHhcccCcEEEEcccchhccCc----ceeEEEEEEeCcccccccHHHHHHHHHH------------Hh-hhcCCC--
Confidence 11 111 1225677888988654 78999999842 232222100 00 000111
Q ss_pred chhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCee-ecCCCCceeeEEEEEecCccccCCC-CHHHH
Q 001989 846 PWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPIL-FRGVNGTVAHEFIVDLRGLKNTAGI-EPEDV 923 (985)
Q Consensus 846 ~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~-~~~~~~~~~~~~iv~~~~~~~~~g~-~~~~v 923 (985)
...+ .++..++.....+-+++..++..++++++.+.|++..... ...+.+..+ +.++++... ..+. +..++
T Consensus 283 ~~~q----~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~gg~~--~w~~l~~~~-~~~~~~~~~~ 355 (409)
T PLN02656 283 TFIQ----AAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEGSMA--VMVKLNLSL-LEDISDDIDF 355 (409)
T ss_pred HHHH----HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCeEEE--EEEecchhh-cCCCCCHHHH
Confidence 1111 1122333321233455556666777888888887621111 112222222 234443100 0011 24444
Q ss_pred -HHHHHHCCCccCC-CCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 924 -AKRLMDYGFHGPT-MSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 924 -~~~L~~~Gi~~~~-~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.+.|.++|+.+.. ..|..++++||+++. +.+++++ .++.|++++++.
T Consensus 356 ~~~~l~~~gV~v~pg~~fg~~~~iRi~~~~--~~e~l~e--al~rl~~~~~~~ 404 (409)
T PLN02656 356 CFKLAREESVIILPGTAVGLKNWLRITFAA--DPSSLEE--ALGRIKSFYLRH 404 (409)
T ss_pred HHHHHHhCCEEEecchhcCCCCeEEEEeCC--CHHHHHH--HHHHHHHHHHHh
Confidence 4667778998643 234446899999984 6888888 677777776643
No 336
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=99.65 E-value=3.1e-14 Score=166.00 Aligned_cols=323 Identities=15% Similarity=0.192 Sum_probs=193.0
Q ss_pred ccccccccCCCccccccccccccccc-cCCCCchhhhhhHHHHHHHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVI 668 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~-~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~ai 668 (985)
..||++++.+..+...+......... .++. +...++.+.+++++... ...++.+||++|++++++.+
T Consensus 52 ~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~----------~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklA 121 (421)
T PRK06777 52 LNTGHRHPKVVAAVRQQLDQFTHTAYQIVPY----------ASYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIA 121 (421)
T ss_pred hccCCCCHHHHHHHHHHHhhcccccccccCC----------hHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHH
Confidence 45888888777665544322111111 1111 11336777788887532 23466789999999999998
Q ss_pred HHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc-------------EEEEEcCCCC--C---CCCHHHHHHHHHh--c
Q 001989 669 RAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM-------------KIVSVGTDAK--G---NINIEELRKAAEA--N 727 (985)
Q Consensus 669 r~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~-------------~vv~v~~d~~--g---~iD~e~L~~~i~~--~ 727 (985)
|.| +++.+||. ...+||....+....|. .+..+|.... + ..|++++++.+++ +
T Consensus 122 r~~------tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~ 195 (421)
T PRK06777 122 RAY------TGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIA 195 (421)
T ss_pred HHh------hCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccC
Confidence 876 23456665 67899988666543221 1222332111 1 1236778888863 3
Q ss_pred CCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCCc------c--CCcEEEeCCcccc
Q 001989 728 RDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY------I--GADVCHLNLHKTF 795 (985)
Q Consensus 728 ~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~pg~------~--g~Di~~~s~hK~l 795 (985)
.+++++|+++-. +..|+..++ +++|.++|+++|+++|+|+++. ++ .+.+. + .+|++++ .|.+
T Consensus 196 ~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-g~---gr~g~~~~~~~~~~~pDiv~~--sK~l 269 (421)
T PRK06777 196 PDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQT-GF---ARTGKLFAMEYYDVKPDLITM--AKSL 269 (421)
T ss_pred CCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CC---ccCCchhhhhhcCCCCCEEee--ehhh
Confidence 457888887643 345654323 9999999999999999999874 22 22221 2 2687754 4766
Q ss_pred cccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHH
Q 001989 796 CIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIA 875 (985)
Q Consensus 796 ~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~ 875 (985)
+ ||..+|++++++++.+.+.... ..+++.|+++.++++.+.|..+..+. ..++.
T Consensus 270 ----~-~G~pigav~~~~~i~~~~~~~~------------------~~~T~~~~p~~~aaa~a~L~~~~~~~---l~~~~ 323 (421)
T PRK06777 270 ----G-GGMPISAVVGRAEVMDAPAPGG------------------LGGTYAGNPLAVAAALAVLDVIAEEK---LCQRA 323 (421)
T ss_pred ----c-CCCceEEEEEcHHHHhccCCCC------------------CCCCCCcCHHHHHHHHHHHHHHHhcc---HHHHH
Confidence 3 4566888888887765543210 01123345666777777787765543 44567
Q ss_pred HHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCccccCCCC----HHHHHHHHHHCCCccCCCCCCCCCEEE
Q 001989 876 ILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGLKNTAGIE----PEDVAKRLMDYGFHGPTMSWPVPGTLM 946 (985)
Q Consensus 876 ~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~----~~~v~~~L~~~Gi~~~~~~~p~~~~lr 946 (985)
.++.++++++|++. .+++ ..+ .+..+ .+.+.. ...+.+ ...+.+.|.++|+.+..... ..+.+|
T Consensus 324 ~~~g~~l~~~L~~l~~~~~~i~~vrg-~G~~~---~i~~~~--~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~-~g~~lr 396 (421)
T PRK06777 324 LILGAHLVEVLEKAKASCPAIVDIRA-RGSMV---AVEFND--PQTGKPSPEFTRQYQRQALEEGLLLLSCGV-HGNVIR 396 (421)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEecC-ceEEE---EEEEec--CccCCccHHHHHHHHHHHHhCCeEEeecCC-CCCEEE
Confidence 77888898888752 2221 112 12222 222210 001111 23455666889998754321 137999
Q ss_pred EeccCCCCHHHHHHHHccCChhHHH
Q 001989 947 IEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 947 is~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
|+|+...|++|||+ .++.|++.+
T Consensus 397 ~~ppl~i~~~~i~~--~~~~l~~~l 419 (421)
T PRK06777 397 FLYPLTIPDAQFSK--ALNILTRLL 419 (421)
T ss_pred EeCCCCCCHHHHHH--HHHHHHHHH
Confidence 99999999999999 667777765
No 337
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=99.64 E-value=1.8e-14 Score=172.71 Aligned_cols=310 Identities=13% Similarity=0.049 Sum_probs=177.2
Q ss_pred hhhHHHHHHHHHHHHHHHh--CCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 627 AQGYQEMFNNLGEWLCTIT--GFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~--G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
.+|..++.+.+.+++.+.. +.+...+..++|++ +.. ++++.+. ++||+|+++++.+..+...++..|++
T Consensus 184 ~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~---~~~~~l~-----~~Gd~Vli~~P~y~~y~~~~~~~g~~ 255 (517)
T PRK13355 184 SKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELIN---LSMSALL-----DDGDEVLIPSPDYPLWTACVNLAGGT 255 (517)
T ss_pred CcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHH---HHHHHhC-----CCCCEEEEcCCCCcCHHHHHHHCCCE
Confidence 4676555544444443322 34445555555544 442 3333321 47899999999888888888899999
Q ss_pred EEEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC--
Q 001989 704 IVSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG-- 775 (985)
Q Consensus 704 vv~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~-- 775 (985)
++.+++++ ++.+|+++|+++++ ++|++|++++|| ++|.+. ..+++|.++|+++|+++++|+++..-. .+
T Consensus 256 ~v~~~~~~~~~~~~d~~~l~~~~~---~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~ 332 (517)
T PRK13355 256 AVHYRCDEQSEWYPDIDDIRSKIT---SRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLE 332 (517)
T ss_pred EEEeecCcccCCCCCHHHHHHhcC---cCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCC
Confidence 99998865 36799999999997 789999999994 799886 138999999999999999999873111 11
Q ss_pred CCCCCccCCcE--E-EeCCcccccccCCCCCCceEEEEEc--ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhh
Q 001989 776 LTSPGYIGADV--C-HLNLHKTFCIPHGGGGPGMGPIGVK--KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 776 l~~pg~~g~Di--~-~~s~hK~l~~p~g~GGPg~G~i~~~--~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~ 850 (985)
......+..|+ + +.|+.|+|++| |+++|++++. +++.+.+-..+ .. . .....+.+..++.
T Consensus 333 ~~s~~~~~~~~~vi~~~S~SK~~~~~----G~RiG~~i~~~~~~~~~~~~~~l-~~--------~--~~~~~~~~~~~q~ 397 (517)
T PRK13355 333 HTSIASLAPDLFCVTFSGLSKSHMIA----GYRIGWMILSGNKRIAKDYIEGL-NM--------L--ANMRLCSNVPAQS 397 (517)
T ss_pred cccHHHhCCCCeEEEEecchhhccCc----ccceEEEEeeCchhhHHHHHHHH-HH--------H--hcCcCCcChHHHH
Confidence 11111222342 2 36778888654 7899999864 32211100000 00 0 0000111111121
Q ss_pred HHHHHHHHHHHHhc--HHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHH-HHH
Q 001989 851 LILPISYTYIAMMG--SKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVA-KRL 927 (985)
Q Consensus 851 ~~~~~a~a~l~~lg--~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~-~~L 927 (985)
++..+|.... .+-+.+ .++..++++++.+.|++..++.+..+.+.++ +.++++.-.. ...+..+++ +.|
T Consensus 398 ----a~~~aL~~~~~~~~~~~~-~~~~~~~r~~l~~~L~~~~g~~~~~p~g~fy--~~~~l~~~~~-~~~~~~~~~~~ll 469 (517)
T PRK13355 398 ----IVQTALGGHQSVKDYLVP-GGRVYEQRELVYNALNAIPGISAVKPKAAFY--IFPKIDVKKF-NIHDDEQFALDLL 469 (517)
T ss_pred ----HHHHHhcCCccHHHHHHH-HHHHHHHHHHHHHHHhcCCCcccCCCCeeeE--EEeecCcccC-CCCCHHHHHHHHH
Confidence 1112221100 111222 2344556788888887621232223333333 2334431000 001344555 456
Q ss_pred HHCCCccCC-CCCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 928 MDYGFHGPT-MSWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 928 ~~~Gi~~~~-~~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.++|+.+.. ..|. .++++||++. .+.++|+. .++.|.+.++..
T Consensus 470 ~~~gV~v~pg~~F~~~~~~~~Ris~~--~~~~~l~~--a~~rl~~~~~~~ 515 (517)
T PRK13355 470 HDKKVLIVQGTGFNWDKPDHFRVVYL--PRLEDLED--AMDRLADFFSYY 515 (517)
T ss_pred HhCCEEEeCcchhCCCCcCEEEEEeC--CCHHHHHH--HHHHHHHHHHHh
Confidence 778998643 2332 4589999984 67888888 778888877654
No 338
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=99.64 E-value=8.6e-14 Score=160.72 Aligned_cols=342 Identities=17% Similarity=0.162 Sum_probs=214.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCc-cceecCCCCCC-CCCcHHHHHHHHhCCccccc------cCCChhhH--hhh
Q 001989 139 MKFSKFDEGLTESQMIEHMQKLASMNKV-YKSFIGMGYYN-THVPPVILRNIMENPAWYTQ------YTPYQAEI--AQG 208 (985)
Q Consensus 139 ~~lp~~~~~~se~e~~~~~~~l~~~n~~-~~~~lG~g~y~-~~~p~~v~~~i~~~~~~~t~------~~pyq~e~--sqg 208 (985)
-.|| .+++++..+...|.+|+.++.. +.+-.|.|-=. ...-+.+.+. ...|+.. ..--||.. +..
T Consensus 28 ~~~p--~~g~~~~~i~~~l~~l~~~~~~~~~~~~~~gere~rv~~~~~~~~---~~~~~hgigr~~~l~~~q~ka~gss~ 102 (444)
T TIGR03531 28 RKIP--EEGWDDETIELFLHELSVMDTNNFPNNVGVGEREGRVFSKLVARR---HYRFCHGIGRSGDLVAPQPKAAGSSL 102 (444)
T ss_pred CcCC--ccCCCHHHHHHHHHHHhcCCcCCCccccCcCcccceeechhhhhc---ccceecCCCCcccccccCccccCccH
Confidence 3677 6899999999999999987642 33334555311 1122222211 1112111 12345552 334
Q ss_pred HHHHHHHHHHHHHHhcCCCCc-ceeeccchHH-HHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 209 RLESLLNFQTMIADLTGLPMS-NASLLDEGTA-AAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 209 ~l~~i~e~q~~ia~L~g~~~~-~~sl~~~~ta-~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
......+++..+++++|.+.. .+.+++++|+ +...++++++..+.++++||+++..|.++.+++.. .|++++++
T Consensus 103 ~~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~----~G~~pv~V 178 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAIST----AGFEPRVI 178 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHH----cCCeEEEe
Confidence 667888899999999999732 3777889985 33333344432211579999999999999998754 57777777
Q ss_pred Cc-----------hhhhc-cCC---CEeEEEEEcCCCC--eeeccHHHHHHHHHhCCcEEEEEecCccccCCC------C
Q 001989 287 DL-----------KDIDY-KSG---DVCGVLVQYPGTE--GEVLDYGDFIKNAHANGVKVVMATDLLALTILK------P 343 (985)
Q Consensus 287 ~~-----------~~l~~-l~~---~t~~V~v~~pn~~--G~v~di~~I~~~a~~~galliV~a~~~~lg~l~------~ 343 (985)
|+ ++|++ +++ ++.++++.+|+++ |..+|+++|+++|+++|++++||+ ..+++... .
T Consensus 179 d~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDa-Ayg~~~~~~~~~~~~ 257 (444)
T TIGR03531 179 ETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNN-AYGLQSNKYMELINK 257 (444)
T ss_pred eeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEEC-cCcCcChhhhhhhhc
Confidence 62 34555 654 5566777777655 478999999999999999999953 33332211 1
Q ss_pred CCccc-ceEEEecC-ccccccCCCCCCcEEEEEE-chhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCc
Q 001989 344 PGELG-ADIVVGSA-QRFGVPMGYGGPHAAFLAT-SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNI 420 (985)
Q Consensus 344 ~~~~G-aDi~v~s~-k~lg~P~~~GGP~~G~l~~-~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni 420 (985)
..+.| +|+++++. |++..|.+ .|++++ ++++.+.+.. . | +. +. ++
T Consensus 258 g~~~Grad~vv~s~hK~l~~pg~-----Gg~I~~~d~el~~~i~~-------~------y---------~g-~~---~~- 305 (444)
T TIGR03531 258 AIKVGRVDAVVSSTDKNFMVPVG-----GAIIYSFDENFIQEISK-------S------Y---------PG-RA---SA- 305 (444)
T ss_pred cccccCCCeEEEeCccCCCCCCC-----EEEEEECCHHHHHHHHH-------h------c---------cC-CC---CC-
Confidence 23354 79999998 87876522 366666 4556554410 0 0 00 11 00
Q ss_pred cchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEcCCCCcce--EEEecC----C-HHHHH
Q 001989 421 CTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQGLPFFDT--VKVKCA----D-AHAIA 489 (985)
Q Consensus 421 ~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~~~--~~~~~~----~-~~~v~ 489 (985)
... +.+.+.+..+|.+|++++.++..++++++.+.|+++ | .++++.+ .|+ +.+... . ...+.
T Consensus 306 ---s~~--~~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~-~~~~~~~-~n~is~~~~~~~~~~~~~~~~g 378 (444)
T TIGR03531 306 ---SPS--LDVLITLLSLGSKGYLELLKERKEMYKYLKELLQKLAERHG-ERLLDTP-ENPISSAMTLSTLKGKDPTMLG 378 (444)
T ss_pred ---hHH--HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cEeecCC-CCceeEEEecccccccCHHHHH
Confidence 112 223333468899999999999999999999999875 4 5666432 122 223322 2 78888
Q ss_pred HHHHHcCcee-eee---------------c--------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 490 SAAYKIEMNL-RVV---------------D--------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 490 ~~L~~~GI~~-~~~---------------~--------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..|..++|.- +.+ + -..+.+......|++|||.|++.|..
T Consensus 379 ~~l~~~~v~g~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~ 442 (444)
T TIGR03531 379 SMLYSRRVTGPRVVTNGDSKTVGGCEFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEK 442 (444)
T ss_pred HHHHhCCCCCceeecCCCceEECCEEeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhh
Confidence 8998887731 100 0 01345555566789999999998864
No 339
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=99.64 E-value=2.5e-14 Score=150.95 Aligned_cols=310 Identities=17% Similarity=0.130 Sum_probs=194.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCccceecCcHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH-----HHHCCc
Q 001989 629 GYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEY-AGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT-----AAMCGM 702 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~-a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~-----a~~~G~ 702 (985)
.+..+-+.+-.+++-+.|.....+....+++.+. ..|.+. ++ ..+++.||+++...+-..-+ +.+.|.
T Consensus 73 ~W~~lp~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aa--lr----~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~ 146 (407)
T COG3844 73 DWFDLPERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAA--LR----PQEGRRVIVSEGDNFPTDLYIAEGLADLLGI 146 (407)
T ss_pred chhhchhHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHH--hc----cCCCceEEeecCCCCCcchhhhcchhhhhcc
Confidence 3444455677889999998775544433443342 222222 21 13467788877532211112 233332
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCC-ccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCc
Q 001989 703 KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPST-HGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY 781 (985)
Q Consensus 703 ~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~-~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~ 781 (985)
. .+-.+.+++++++++++ ++++.|++++.|+ +|..- |+.+|.+++|++|+++..|-||+.+...+ ....
T Consensus 147 ~-----~~~~~~~~P~~~~~~~~---dd~AvV~L~~V~y~TGql~-dm~aiT~~AH~~galv~wDLAHsaGavp~-~Lh~ 216 (407)
T COG3844 147 G-----YDLEGVIAPRALEEAIT---DDVAVVLLSHVNYKTGQLL-DMRAITALAHQHGALVGWDLAHSAGAVPV-DLHA 216 (407)
T ss_pred c-----ccceeeeChHHHHHhhc---cceEEEEecccccccccee-eHHHHHHHHHhcCceEEeehhcccCCcce-eecc
Confidence 2 12235567889999998 9999999999986 99998 99999999999999999999997554433 4567
Q ss_pred cCCcEEEeCCcccccccCCCCCCc-eEEEEEccccc-CcCCCCccccCCCCCCC----CCCCC---CCCCCCcchhhhHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPG-MGPIGVKKHLA-PFLPSHPVVSTGGIPAP----EKSQP---LGTIAAAPWGSALI 852 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg-~G~i~~~~~l~-~~lp~~~~g~~~~~~~~----~~~~~---~~~i~s~~~g~~~~ 852 (985)
+|+|+.+.++||+|. |||| .+++++.++.. +..|. .-||.+..-++ ..+.+ ..-.|+++ +...
T Consensus 217 ~gaDfaigcsyKYLN-----gGPGapa~l~v~~~h~e~~~~~-lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~--~V~s 288 (407)
T COG3844 217 AGADFAIGCSYKYLN-----GGPGAPAGLFVAPRHRERSWPP-LSGWWGHARPFAMEEVYAPGPGARRFLCGTQ--PVLS 288 (407)
T ss_pred cCCCeeeeeeceecc-----CCCCCceeEEeccccccccccc-cccccCCCCcchhhhccCcCccccceeeCCc--chhh
Confidence 899999999999996 7884 67777765433 33332 22332210000 00000 01122221 1111
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc---c--CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---H--YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL 927 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~---g--~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L 927 (985)
+++--..|....+-++.+..++...+++|+.+-++. . +++..+......-..+.+..+ ..+.|.+.|
T Consensus 289 ~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp--------~~~~V~qaL 360 (407)
T COG3844 289 LAALEGALDIFADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHP--------HGYQVMQAL 360 (407)
T ss_pred hHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecC--------cHHHHHHHH
Confidence 122224466666667888888999999999988874 2 333322111111222334433 578999999
Q ss_pred HHCCCccCCCCCCCCCEEEEecc-CCCCHHHHHHHHccCChhHHHHhhc
Q 001989 928 MDYGFHGPTMSWPVPGTLMIEPT-ESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 928 ~~~Gi~~~~~~~p~~~~lris~t-~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.++|++.- .. .++.||+.|| .|++-+||-. .++.|.+++..+.
T Consensus 361 i~rGVigD-~R--~P~vlRfgftPlY~~~~DVw~--AV~~L~evL~t~a 404 (407)
T COG3844 361 IDRGVIGD-FR--EPDVLRFGFTPLYVSFVDVWD--AVDALEEVLDTLA 404 (407)
T ss_pred HHcCcccc-cc--CCCeeeecCccceechhHHHH--HHHHHHHHHHhhc
Confidence 99999763 22 2589999999 5899999988 8899999987653
No 340
>PRK08068 transaminase; Reviewed
Probab=99.64 E-value=2.9e-14 Score=165.16 Aligned_cols=288 Identities=12% Similarity=0.079 Sum_probs=177.5
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Ccc-ceecCcH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSF-SLQPNAG-AAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~-~~~~~sG-a~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+.+.+++.+.+|. +.. .+..++| .++... +++.+. .++++|+++++.++.+...++..|++
T Consensus 70 ~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~---~~~~~~-----~~gd~vlv~~P~y~~~~~~~~~~g~~ 141 (389)
T PRK08068 70 RGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVE---LPQCLM-----NPGDTILVPDPGYPDYLSGVALARAQ 141 (389)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHH---HHHHhC-----CCCCEEEEcCCCCcchHHHHHhcCCE
Confidence 56655555555555555564 333 4444444 444432 233321 46789999999888888888899999
Q ss_pred EEEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEccccc-cccC--
Q 001989 704 IVSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMN-AQVG-- 775 (985)
Q Consensus 704 vv~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~-~~~~-- 775 (985)
++.+|++++ ..+|+++++++++ +++++|++++|| ++|.+. ..+++|.++|+++|+++++|.++.. ...+
T Consensus 142 ~~~i~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~ 218 (389)
T PRK08068 142 FETMPLIAENNFLPDYTKIPEEVA---EKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQK 218 (389)
T ss_pred EEEeecccccCCCCCHHHHHHhcc---ccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCC
Confidence 999999753 5789999999886 678999999994 799986 1357888899999999999998731 1111
Q ss_pred C----CCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 776 L----TSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 776 l----~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
. ...+.....+++.|+.|.|+.| |.++|++++++++...+.... ....++. .+.
T Consensus 219 ~~s~~~~~~~~~~~i~~~S~SK~~g~~----GlRiG~~~~~~~l~~~l~~~~--------------~~~~~~~----~~~ 276 (389)
T PRK08068 219 PVSFLQTPGAKDVGIELYTLSKTFNMA----GWRVAFAVGNESVIEAINLLQ--------------DHLFVSL----FGA 276 (389)
T ss_pred CcChhhCCCccCCEEEEecchhccCCc----cceeEeEecCHHHHHHHHHHH--------------hhccCCC----ChH
Confidence 0 0011112347778888988654 678999998877655432110 0001111 001
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH-
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD- 929 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~- 929 (985)
...++..++. -+.+-+++..++..++++++.+.|++ ++.+ ..+.+.++ +.+.++ .+.+..++++.|.+
T Consensus 277 ~q~~~~~~l~-~~~~~~~~~~~~~~~~r~~~~~~L~~~g~~~--~~~~g~~~--~~v~~~-----~~~~~~~~~~~l~~~ 346 (389)
T PRK08068 277 IQDAAIEALL-SDQSCVAELVARYESRRNAFISACREIGWEV--DAPKGSFF--AWMPVP-----KGYTSEQFADLLLEK 346 (389)
T ss_pred HHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCcc--cCCCeeEE--EEEECC-----CCCCHHHHHHHHHHh
Confidence 1111112222 12344555566677788889998876 4432 22222222 245554 13577899999986
Q ss_pred CCCccCCC-CCC--CCCEEEEeccCCCCHHHHHH
Q 001989 930 YGFHGPTM-SWP--VPGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 930 ~Gi~~~~~-~~p--~~~~lris~t~~~t~eeId~ 960 (985)
+||.+... .|+ ..+++||++. .+++.+..
T Consensus 347 ~gi~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~ 378 (389)
T PRK08068 347 AHVAVAPGNGFGEHGEGYVRVGLL--TDEERLRE 378 (389)
T ss_pred CCEEEecchHhCccCCCeEEEEEc--CCHHHHHH
Confidence 59987542 232 2479999995 34555555
No 341
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.64 E-value=1.4e-14 Score=166.46 Aligned_cols=208 Identities=19% Similarity=0.174 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
.+++++.+++++|.+.. +.+++|+.|..+++ . .. +++|+||+++..|+.+... +...|++++.++.
T Consensus 49 ~~~le~~la~l~g~~~~-l~~~sG~~al~~~l---~-ll-----~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~ 118 (378)
T TIGR01329 49 RTALESLLAKLDKADRA-FAFSSGMAALDVIT---R-LL-----NNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDT 118 (378)
T ss_pred HHHHHHHHHHHhCCCcE-EEECCHHHHHHHHH---H-Hh-----CCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCC
Confidence 56889999999998653 45567776553222 2 21 4788999988777655432 4568999999987
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++++++++ ++|++|++++| |.+|.+. |+++|+++||++|++++||+++..+ ....|..+|+|+++
T Consensus 119 ~-----d~~~le~~i~---~~tklv~le~psnptg~v~-dl~~I~~la~~~g~~vivD~a~~~~--~~~~~l~~g~Di~v 187 (378)
T TIGR01329 119 T-----DLDKVKAALG---PKTKLVLLESPTNPLQKIV-DIRKISEMAHAQNALVVVDNTMMSP--LLCNPLELGADIVY 187 (378)
T ss_pred C-----CHHHHHHhcC---cCceEEEEECCCCCCCeee-cHHHHHHHHHHcCCEEEEECCCccc--ccCChhhcCCcEEE
Confidence 3 8999999997 89999999999 5799998 8999999999999999999987433 23456678999999
Q ss_pred eCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
+|+||+++.| ++..+|++++++ .+.+.+.... ...+...+ +. .+ ++...+.+.
T Consensus 188 ~S~tK~l~G~---~~~~~G~v~~~~~~~~~~~~~~~-------------~~~G~~~~-----~~---~a--~l~~~~l~t 241 (378)
T TIGR01329 188 HSATKFLAGH---SDVMAGVLAVKGEEIAKKVYFLQ-------------NSTGSGLA-----PF---DC--WLLLRGIKT 241 (378)
T ss_pred EecceeccCC---ccceeEEEEeCcHHHHHHHHHHH-------------HhcCCcCC-----HH---HH--HHHHccCCC
Confidence 9999998521 122378888864 3323221100 00011111 11 12 233445556
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 001989 868 LTEASKIAILNANYMAKRLEK 888 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~ 888 (985)
+..+.++..+++..+++.|++
T Consensus 242 l~~R~e~~~~na~~la~~L~~ 262 (378)
T TIGR01329 242 LAIRIEKQQENARAIAMFLST 262 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 777788888999999999986
No 342
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=99.64 E-value=2.8e-15 Score=161.85 Aligned_cols=337 Identities=17% Similarity=0.199 Sum_probs=204.0
Q ss_pred CHHHHHHHHHHHhccccCcccccccccccccCCCccccccccc-cccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCC
Q 001989 569 TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVT-WPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGF 647 (985)
Q Consensus 569 se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~-~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~ 647 (985)
=+++..|||+..+..- ...+|+|+++++++.+.+... |-.+..|. ..| +.++.+.|++.+--
T Consensus 45 yDe~G~ryLD~f~Gi~------tvslGHchP~v~~a~~kQl~~l~H~t~~~~-~~p----------i~~~Ae~L~s~~P~ 107 (442)
T KOG1404|consen 45 YDEEGRRYLDAFGGIV------TVSLGHCHPDVVAAAVKQLKKLYHTTSGYL-NPP----------IHDLAEALVSKLPG 107 (442)
T ss_pred EcCCCceeehhhCCeE------EEEcCCCChHHHHHHHHhhhhhEEeecccc-CCc----------HHHHHHHHHHhCCC
Confidence 3567789999887654 346899999999987777632 22232222 113 45777778777744
Q ss_pred Cc-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCcEEEEEc-------------CCCC
Q 001989 648 DS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGMKIVSVG-------------TDAK 712 (985)
Q Consensus 648 ~~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~~vv~v~-------------~d~~ 712 (985)
+- +.++.|||++|++.+++.+|.|. ..-+||. ..++||..+..+...|.....-+ .|+.
T Consensus 108 ~l~~vfF~nsGsEANelal~mar~Yt------~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~ 181 (442)
T KOG1404|consen 108 DLKVVFFVNSGSEANELALKMARLYT------GNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPY 181 (442)
T ss_pred CceEEEEecCCchHHHHHHHHHHHhc------CCceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcc
Confidence 43 45788999999999999999883 2335554 77899987776543332221111 1110
Q ss_pred -----CC-----CC--HHHHHHHHHhcCC-CEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccC
Q 001989 713 -----GN-----IN--IEELRKAAEANRD-NLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVG 775 (985)
Q Consensus 713 -----g~-----iD--~e~L~~~i~~~~~-~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~ 775 (985)
+. .| .++++..|....+ .+++.+++.- ..-|++++ -+++..++|+++|.++|.|++| .+
T Consensus 182 r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVq----tG 257 (442)
T KOG1404|consen 182 RGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQ----TG 257 (442)
T ss_pred cccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhh----hc
Confidence 11 00 2344445443223 3556666543 34577763 3899999999999999999876 45
Q ss_pred CCCCCc-cC-------CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcch
Q 001989 776 LTSPGY-IG-------ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 776 l~~pg~-~g-------~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~ 847 (985)
+++.|. || +||++. .|.++ .| --+|.++..+++..-+..... ..+ ++.
T Consensus 258 fGRtG~~wgfe~h~v~PDIvTm--AKgiG----nG-~Pl~AVvtt~EIa~v~~~~~~--------------~fn---Tyg 313 (442)
T KOG1404|consen 258 FGRTGHMWGFESHGVVPDIVTM--AKGIG----NG-FPLGAVVTTPEIADVLNQKSS--------------HFN---TYG 313 (442)
T ss_pred cccccccccccccCCCccHHHH--Hhhcc----CC-CcceeeecCHHHHHHHHhccc--------------ccc---ccC
Confidence 666653 22 577754 37663 34 445566667776654432210 011 244
Q ss_pred hhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc---cCCeeecCCCCceeeEE-EEEec-CccccCCCCHHH
Q 001989 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---HYPILFRGVNGTVAHEF-IVDLR-GLKNTAGIEPED 922 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~---g~~l~~~~~~~~~~~~~-iv~~~-~~~~~~g~~~~~ 922 (985)
|++.+++++.+.|..+.+|.+.+ +..+...||.++|.+ ..+++-.-.....+..+ +++.+ ..+.........
T Consensus 314 gnP~a~avg~aVL~Vikee~LqE---~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V~dk~~~~pp~~~~~~~ 390 (442)
T KOG1404|consen 314 GNPVACAVGLAVLKVIKEENLQE---NAAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELVSDKSEPKPPATAEGAV 390 (442)
T ss_pred CCchhHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEecccCCCCCcchHHHHH
Confidence 56777788888899888776554 666788999998865 33442111111122111 12222 000011112456
Q ss_pred HHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHH
Q 001989 923 VAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 923 v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~ 960 (985)
+.+.+.+.|+.++.-... .+.+||+|+...|+||||.
T Consensus 391 i~~~cke~Gvlvg~g~i~-G~vfriaPPlciT~edi~f 427 (442)
T KOG1404|consen 391 IGEQCKELGVLVGKGGIH-GNVFRIAPPLCITKEDIDF 427 (442)
T ss_pred HHHHHHHhCeeeeccccc-ceEEEecCCeeccHHHHHH
Confidence 778889999998632211 3689999999999999976
No 343
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=99.64 E-value=3.1e-14 Score=164.75 Aligned_cols=213 Identities=19% Similarity=0.191 Sum_probs=156.4
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--- 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~--- 289 (985)
..++++.+|++.|.+ ++.++.+|++++.++++++ +. +||+||+++..|+.....+...++..|++++++|.+
T Consensus 72 ~~~le~~lA~l~g~~--~al~~~sG~~Ai~~~l~al-l~--~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~~d~~ 146 (403)
T PRK07810 72 VSMFEERLRLIEGAE--ACFATASGMSAVFTALGAL-LG--AGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDGEDLS 146 (403)
T ss_pred HHHHHHHHHHHhCCC--cEEEECChHHHHHHHHHHH-hC--CCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECCCCHH
Confidence 345789999999977 4778899998888777665 23 899999999999877777766667789999999764
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|.++|+||++.|+ |.+++ .|
T Consensus 147 ~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD-~a~a~~~~~~~~~~gaDivv~S~tK~l~g---~g 222 (403)
T PRK07810 147 QWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLD-NVFATPLLQRGLPLGADVVVYSGTKHIDG---QG 222 (403)
T ss_pred HHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEE-CCCCccccCChhhcCCcEEEccCCceecC---Cc
Confidence 4666 7889999999998 78999999999999999999999994 45666666667789999999998 77753 22
Q ss_pred CCcEEEEEEchhhHhc-CCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHH
Q 001989 367 GPHAAFLATSQEYKRM-MPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 367 GP~~G~l~~~~~~~~~-lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~ 445 (985)
..-+|+++++++.+.. +- ..++..|. | .++. .|+ +...+-+-+..
T Consensus 223 ~~~gG~v~~~~~~~~~~l~-------------------------~~~~~~g~---~-~s~~---~a~--l~l~~L~tl~~ 268 (403)
T PRK07810 223 RVLGGAILGDREYIDGPVQ-------------------------KLMRHTGP---A-LSAF---NAW--VLLKGLETLAL 268 (403)
T ss_pred CceeEEEEeChHHHHHHHH-------------------------HHHHHhCC---C-CCHH---HHH--HHHhccCcHHH
Confidence 2225788887765431 10 00011111 0 0111 222 24555667788
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeE
Q 001989 446 IAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
+.++..+++.++.+.|++...++
T Consensus 269 R~~~~~~~a~~~a~~L~~~p~v~ 291 (403)
T PRK07810 269 RVRHSNASALRIAEFLEGHPAVR 291 (403)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcc
Confidence 88888999999999999875454
No 344
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=99.64 E-value=5.7e-14 Score=158.29 Aligned_cols=214 Identities=21% Similarity=0.200 Sum_probs=158.7
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchh--
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKD-- 290 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~-- 290 (985)
...+|+.+|+|-|.+. +..+++|.+++.++.+++. ++||+||+++..+......+....+.+|+++.++|..+
T Consensus 65 ~~~lE~~~a~LEg~~~--~~afsSGmaAI~~~~l~ll---~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~ 139 (396)
T COG0626 65 RDALEEALAELEGGED--AFAFSSGMAAISTALLALL---KAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDE 139 (396)
T ss_pred HHHHHHHHHHhhCCCc--EEEecCcHHHHHHHHHHhc---CCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChH
Confidence 4457789999999876 7788999999888777652 37999999999999999988888888999999998633
Q ss_pred -hhc-cC-CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCC
Q 001989 291 -IDY-KS-GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 291 -l~~-l~-~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
+++ +. ++|++|++..| |++-.+.||++|+++||++|++++| ++.++-+++..|-++||||++.|+ |.+++.-.
T Consensus 140 ~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvV-DNTfatP~~q~PL~~GaDIVvhSaTKyl~GHsD- 217 (396)
T COG0626 140 ALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVV-DNTFATPVLQRPLELGADIVVHSATKYLGGHSD- 217 (396)
T ss_pred HHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEE-ECCcccccccChhhcCCCEEEEeccccccCCcc-
Confidence 333 44 69999999998 8999999999999999999988888 578888899999999999999998 88865321
Q ss_pred CCCcEEEEEEchh-hHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHH
Q 001989 366 GGPHAAFLATSQE-YKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLK 444 (985)
Q Consensus 366 GGP~~G~l~~~~~-~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~ 444 (985)
--+|.+..+++ +.+++ ....++.-|+ +. ++. - .|+.+-|.+-|.
T Consensus 218 --vl~G~v~~~~~~~~~~~------------------------~~~~~~~~G~--~l--~p~---d--A~l~lRGlkTL~ 262 (396)
T COG0626 218 --VLGGVVLTPNEELYELL------------------------FFAQRANTGA--VL--SPF---D--AWLLLRGLRTLA 262 (396)
T ss_pred --eeeeEEecChHHHHHHH------------------------HHHHHhhcCC--CC--CHH---H--HHHHHhccchHH
Confidence 12244443433 22221 0001111111 00 111 1 155666777777
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeE
Q 001989 445 TIAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 445 ~i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
-+.+++.++|..+++.|++...++
T Consensus 263 ~Rm~~~~~nA~~IA~~L~~~p~V~ 286 (396)
T COG0626 263 LRMERHNENALKIAEFLADHPKVK 286 (396)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeE
Confidence 788888999999999999875455
No 345
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=99.64 E-value=4.6e-14 Score=163.87 Aligned_cols=294 Identities=13% Similarity=0.082 Sum_probs=180.6
Q ss_pred hhHHHHHHHHHHHHHHHhCCC---cc-ceecCcHH-HHHHHHHHHHHHHHHhcCCCC---CCEEEEcCCCCcccHHHHHH
Q 001989 628 QGYQEMFNNLGEWLCTITGFD---SF-SLQPNAGA-AGEYAGLMVIRAYHKARGDHH---RNVCIIPVSAHGTNPATAAM 699 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~---~~-~~~~~sGa-~a~~a~l~air~~~~~~g~~~---~~~IIv~~~~Hg~~~~~a~~ 699 (985)
+|..++.+.+.+++.+.+|.+ .. .+..+.|+ ++...+ ++.+. .+ +++|+++++.+..+...++.
T Consensus 65 ~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~---~~~l~-----~~~~~gd~vlv~~P~y~~~~~~~~~ 136 (396)
T PRK09147 65 AGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAF---AQTVI-----DRDGPGPLVVCPNPFYQIYEGAALL 136 (396)
T ss_pred CCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHH---HHHHc-----CCCCCCCEEEEcCCCccchHHHHHh
Confidence 566666666777777776854 33 55554454 444333 33321 24 78899999877777777888
Q ss_pred CCcEEEEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-
Q 001989 700 CGMKIVSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ- 773 (985)
Q Consensus 700 ~G~~vv~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~- 773 (985)
.|++++.||++++ +.+|+++|++.+. +++++|++++| |++|.+. ..+++|.++|+++++++++|.++..-.
T Consensus 137 ~g~~~~~vp~~~~~~~~~d~~~l~~~~~---~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~ 213 (396)
T PRK09147 137 AGAEPYFLNCDPANNFAPDFDAVPAEVW---ARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYF 213 (396)
T ss_pred cCCEEEEeccCccccCccCHHHHHHHHh---hccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeecccccccc
Confidence 9999999998643 5799999998886 68899999999 5799885 258888999999999999999874211
Q ss_pred cCC-CCC------CccCCc-----EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCC
Q 001989 774 VGL-TSP------GYIGAD-----VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGT 841 (985)
Q Consensus 774 ~~l-~~p------g~~g~D-----i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~ 841 (985)
..- ..+ ...+.| +++.|+.|.|++| |.++|++++++++.+.+.... .....+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~----GlRiG~~~~~~~l~~~~~~~~------------~~~~~~ 277 (396)
T PRK09147 214 DEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVP----GLRSGFVAGDAALLKKFLLYR------------TYHGCA 277 (396)
T ss_pred CCCCCCchhhhhccccCccccccEEEEeccccccCCc----cceeeeecCCHHHHHHHHHHh------------hhcccC
Confidence 110 000 011222 7778888887554 788999998876654432100 000011
Q ss_pred CCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHH
Q 001989 842 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPE 921 (985)
Q Consensus 842 i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~ 921 (985)
+++ ..+. ++.+.+ ...+-+++..+...++.+.+.+.|++.+.+. .+.+..+ +.++++ .+..
T Consensus 278 ~~~--~~q~----a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~--~p~~g~f--~~~~~~-------~~~~ 338 (396)
T PRK09147 278 MPP--AVQA----ASIAAW--NDEAHVRENRALYREKFDAVTPILAPVLDVQ--LPDAGFY--LWAKVP-------GDDT 338 (396)
T ss_pred CCH--HHHH----HHHHHh--cchhHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCeeEE--EEEECC-------CCHH
Confidence 111 1111 111111 1223344555556677777888887643332 1222222 345553 2467
Q ss_pred HHHHHHH-HCCCccCC-CCC--------CCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 922 DVAKRLM-DYGFHGPT-MSW--------PVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 922 ~v~~~L~-~~Gi~~~~-~~~--------p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+++++|. ++|+.+.. ..| +..+++||++.. +.+++++ .++.|++.+
T Consensus 339 ~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~--~~~~l~~--~l~rl~~~~ 394 (396)
T PRK09147 339 EFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVA--PLAECVE--AAERIVDFC 394 (396)
T ss_pred HHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecC--CHHHHHH--HHHHHHHHh
Confidence 7888875 57987643 111 124789999874 5777877 556666544
No 346
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=99.64 E-value=1.3e-14 Score=164.60 Aligned_cols=280 Identities=17% Similarity=0.140 Sum_probs=173.7
Q ss_pred hHHHHHHHHHHHHHHHhCCCcc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEc---CCCCcccHHHHHHCCcEE
Q 001989 629 GYQEMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIP---VSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~---~~~Hg~~~~~a~~~G~~v 704 (985)
|..+.+.++++++++++|.+.. .+.+++|.+++.+++.++. +++++|+++ .+.|.++...+++.|+++
T Consensus 51 g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~--------~~gd~Vli~~~d~p~~~s~~~~~~l~ga~~ 122 (346)
T TIGR03576 51 GPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALE--------PPGRKVVHYLPEKPAHPSIPRSCKLAGAEY 122 (346)
T ss_pred CCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhC--------CCCCEEEECCCCCCCchhHHHHHHHcCCEE
Confidence 4446788999999999999543 4556778887765555442 478889874 357777777788899886
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCcccc---ccCHHHHHHHHHHcCCEEEEEccccccccCC-C--C
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVY---EEGIDEICKIIHDNGGQVYMDGANMNAQVGL-T--S 778 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i---~~di~eI~~la~~~galliVD~a~~~~~~~l-~--~ 778 (985)
+. + .|+++++. . +++++|+++..+.+|.+ . |+++|+++|+++|++++||.||..+..+. . .
T Consensus 123 ~~--~-----~~l~~l~~--~---~~~~lIiitg~s~~G~v~~~~-~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~ 189 (346)
T TIGR03576 123 FE--S-----DELSELKK--I---DGTSLVVITGSTMDLKVVSEE-DLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPP 189 (346)
T ss_pred ec--c-----CCHHHHhh--C---cCceEEEEECCCCCCcccCHH-HHHHHHHHHHHcCCEEEEECCccccccccCCCCC
Confidence 43 2 25666432 1 46788888766777877 4 79999999999999999999986432211 1 1
Q ss_pred CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 001989 779 PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 779 pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
...+++|+++.+++|++ +|+.+|++++++++.+.+.... + .. ..+. ++....++.+
T Consensus 190 ~~~~~~divv~s~SKal------aG~r~G~v~~~~~li~~l~~~~-----------~--~~-~~s~----~~~~~~aa~~ 245 (346)
T TIGR03576 190 ALDLGADLVVTSTDKLM------DGPRGGLLAGRKELVDKIKSVG-----------E--QF-GLEA----QAPLLAAVVR 245 (346)
T ss_pred HHHcCCcEEEeccchhc------cccceEEEEeCHHHHHHHHHhh-----------c--Cc-ccCc----cHHHHHHHHH
Confidence 12346799999999965 4788999999987766553210 0 00 1111 1122333344
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCH-HHHHHHHHHCCCccCCC
Q 001989 859 YIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEP-EDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 859 ~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~-~~v~~~L~~~Gi~~~~~ 937 (985)
+|..+.. ....+...++.+++.+.+++ +++. +.+ .. + +.++++ +.+. +.+.+.|.++||.+...
T Consensus 246 aL~~~~~---~~~~~~l~~r~~~~~~~l~~-~~~~-~~~-~~-f--~~~~~~------~~~~~~~~~~ll~~~gV~v~~~ 310 (346)
T TIGR03576 246 ALEEFEL---SRIRDAFKRKEEVYLRLFDK-LNVE-RTP-TG-F--VIKGVE------EEKLIEIGLDLLRNYGIITITA 310 (346)
T ss_pred HHhhccH---HHHHHHHHHHHHHHHHHHHh-CCCC-cCC-Ce-E--EEEeCC------CCCHHHHHHHHHHhCCEEEeCC
Confidence 4544322 23334455666666666653 4432 222 11 2 334543 1223 44555566789987653
Q ss_pred -CCC-CCCEEEEeccCCC-CHHHHHHHHccCChhHH
Q 001989 938 -SWP-VPGTLMIEPTESE-SKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 938 -~~p-~~~~lris~t~~~-t~eeId~~~~~~~l~~~ 970 (985)
.|+ .++++|||+.... ++.|+++ ++++|++.
T Consensus 311 ~~f~~~~~~vRis~~~~~~~~~~~~~--~~~al~~~ 344 (346)
T TIGR03576 311 VGMPGASKTLRFDLAAKDAERIGDDY--LVEAVKDS 344 (346)
T ss_pred cccCCCCCeEEEEEecChHHhcCHHH--HHHHHHhc
Confidence 333 3689999986432 3337888 66666653
No 347
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=99.64 E-value=8e-14 Score=160.04 Aligned_cols=212 Identities=20% Similarity=0.201 Sum_probs=156.0
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|++.|.+ ++.++.|+++++.++++++ . ++||+|+++...|+.....+....+..|++++.++. ++
T Consensus 56 ~~Le~~lA~leg~e--~ivvt~gg~~Ai~~~l~al-l--~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~ 130 (388)
T PRK08861 56 GLLEQTLSELESGK--GAVVTNCGTSALNLWVSAL-L--GPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQSDAAA 130 (388)
T ss_pred HHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHH-c--CCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECCCCHHH
Confidence 34678999999964 5888999999888887765 3 389999999999998887776655567899988864 45
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|-++|||++++|+ |++++|..
T Consensus 131 l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvD-ea~~~~~~~~pl~~GaDivv~S~tK~l~G~~d--- 206 (388)
T PRK08861 131 LDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVD-NTFLTPVLQKPLELGADFVIHSTTKYINGHSD--- 206 (388)
T ss_pred HHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEE-CCccccccCCCcccCCCEEEeecceeccCCCc---
Confidence 666 7789999999998 78999999999999999999999994 45566666677889999999999 77764421
Q ss_pred CcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 368 PHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 368 P~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
--.|++.+++ ++.+++. ..|..-|. . .++. ..|+...|-+-|.-+
T Consensus 207 ~~gG~i~~~~~~~~~~~~-------------------------~~~~~~G~--~--~~p~-----~a~l~~rgl~Tl~lR 252 (388)
T PRK08861 207 VIGGVLITKTKEHAEELA-------------------------WWGNCIGA--T--GTPF-----DSYMTLRGIRTLGAR 252 (388)
T ss_pred ceeEEEEecHHHHHHHHH-------------------------HHHhccCC--C--CChH-----HHHHHHhcCCCHHHH
Confidence 1146666654 3332220 00111110 0 0122 124567777778888
Q ss_pred HHHHHHHHHHHHHHHhcCCCeE
Q 001989 447 AQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
.++..++|..+++.|++...++
T Consensus 253 ~~~~~~~a~~~a~~L~~~p~v~ 274 (388)
T PRK08861 253 MRVHEESAQQILAYLQTQSLVG 274 (388)
T ss_pred HHHHHHHHHHHHHHHHhCCCee
Confidence 8999999999999999885454
No 348
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=99.64 E-value=7.2e-14 Score=161.46 Aligned_cols=214 Identities=19% Similarity=0.206 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
...++++.+|++.|.+. +.++.+|++++.+++.++ . ++||+||++...|+++...++.+++..|+++++++.
T Consensus 65 ~~~~le~~lA~l~g~~~--~i~~ssG~~Ai~~~l~al-l--~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~~d~ 139 (398)
T PRK08249 65 TVQAFEEKVRILEGAEA--ATAFSTGMAAISNTLYTF-L--KPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCETGDH 139 (398)
T ss_pred HHHHHHHHHHHHhCCCe--EEEeCChHHHHHHHHHHh-c--CCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCCCCH
Confidence 34568899999999765 567788887777666554 2 389999999999999888887666778999998765
Q ss_pred hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCC
Q 001989 289 KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 289 ~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
+++++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|..+|+|+++.|. |.++++
T Consensus 140 e~l~~~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD-~t~a~~~~~~~l~~~~Divv~S~sK~l~g~--- 215 (398)
T PRK08249 140 EQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVD-NTFATPINQNPLALGADLVIHSATKFLSGH--- 215 (398)
T ss_pred HHHHHhcCCCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEE-CCcCccccCCchhhCCCEEeccCceecCCC---
Confidence 45666 8889999999988 78999999999999999999999995 34454444456678999999998 777542
Q ss_pred CCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHH
Q 001989 366 GGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 366 GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~ 445 (985)
|...+|++..++++.+++.. .|+..+ .+.++. .+ |+...+.+-+..
T Consensus 216 ~~~~gG~vv~~~~l~~~l~~-------------------------~~~~~g----~~~s~~---~a--~l~l~~l~tL~~ 261 (398)
T PRK08249 216 ADALGGVVCGSKELMEQVYH-------------------------YREING----ATMDPM---SA--YLILRGMKTLKL 261 (398)
T ss_pred CCceEEEEECCHHHHHHHHH-------------------------HHHhcC----CCCCHH---HH--HHHHhCcchHHH
Confidence 21124777777666654410 001111 011122 11 123445566777
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeE
Q 001989 446 IAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
..++..+++..+.+.|++...++
T Consensus 262 R~~~~~~na~~la~~L~~~p~v~ 284 (398)
T PRK08249 262 RVRQQQESAMALAKYLQTHPKVE 284 (398)
T ss_pred HHHHHHHHHHHHHHHHHcCCCee
Confidence 77888899999999999875454
No 349
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=99.64 E-value=1.5e-14 Score=166.10 Aligned_cols=208 Identities=18% Similarity=0.176 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
..++++.++++.|.+.+ +..+||++|+..+++++. +++++|++++..|+..... ....|++++.++.
T Consensus 55 ~~~Le~~lA~leg~e~i-vvt~gg~~Ai~~~l~all--------~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~ 125 (388)
T PRK08861 55 RGLLEQTLSELESGKGA-VVTNCGTSALNLWVSALL--------GPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ 125 (388)
T ss_pred HHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHHHc--------CCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECC
Confidence 45788999999997543 455677777654444331 3788999988767643322 2345788888864
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
.|+++++++++ ++|++|++++| |++|.+. |+++|+++|+++|++++||.++..+ .+..|.++|+|+++
T Consensus 126 -----~d~e~l~~~i~---~~tklV~lesP~NPtG~v~-dl~~I~~la~~~gi~vIvDea~~~~--~~~~pl~~GaDivv 194 (388)
T PRK08861 126 -----SDAAALDAALA---KKPKLILLETPSNPLVRVV-DIAELCQKAKAVGALVAVDNTFLTP--VLQKPLELGADFVI 194 (388)
T ss_pred -----CCHHHHHHhcC---cCCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEECCcccc--ccCCCcccCCCEEE
Confidence 48999999997 78999999999 5799998 8999999999999999999998532 24567788999999
Q ss_pred eCCcccccccCCCCCCc---eEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 789 LNLHKTFCIPHGGGGPG---MGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg---~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
.|+||+++ ||+ +|++++++ ++.+.+... ...++...+ + ..+| +...|
T Consensus 195 ~S~tK~l~------G~~d~~gG~i~~~~~~~~~~~~~~-------------~~~~G~~~~-p-------~~a~--l~~rg 245 (388)
T PRK08861 195 HSTTKYIN------GHSDVIGGVLITKTKEHAEELAWW-------------GNCIGATGT-P-------FDSY--MTLRG 245 (388)
T ss_pred eecceecc------CCCcceeEEEEecHHHHHHHHHHH-------------HhccCCCCC-h-------HHHH--HHHhc
Confidence 99999984 442 57777653 333322100 001122221 1 1234 44455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC
Q 001989 865 SKGLTEASKIAILNANYMAKRLEKHY 890 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~g~ 890 (985)
-+.+.-+++++.+++..+++.|++..
T Consensus 246 l~Tl~lR~~~~~~~a~~~a~~L~~~p 271 (388)
T PRK08861 246 IRTLGARMRVHEESAQQILAYLQTQS 271 (388)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 56677788999999999999998743
No 350
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=99.64 E-value=4.5e-14 Score=162.13 Aligned_cols=308 Identities=15% Similarity=0.089 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
..++++++++++|.+.. +.+++|++|...++.++ +.+++|+||+++..|......+...|++++.++++++
T Consensus 33 ~~~~e~~la~~~g~~~~-v~~~sgt~aL~~~l~al-------~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d~~~ 104 (376)
T TIGR02379 33 SRRCETWLENRTGTKKA-LLTPSCTAALEMAALLL-------DIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDT 104 (376)
T ss_pred HHHHHHHHHHHhCCCeE-EEeCCHHHHHHHHHHHc-------CCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCc
Confidence 45788899999988764 55667777654333322 1247899999998776666667788999999999876
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CCCCccCCcEEEeCC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TSPGYIGADVCHLNL 791 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~~pg~~g~Di~~~s~ 791 (985)
+.+|+++++++++ ++|++|+.++| +|... |+++|.++|+++|+++++|++|..+..-- ...+.+ .|+.++|+
T Consensus 105 ~~~d~~~le~~i~---~~tk~Iip~~~--~G~~~-d~~~I~~la~~~~i~vIeDaa~~~g~~~~~~~~g~~-~~~~~fSf 177 (376)
T TIGR02379 105 MNIDETLIESAIT---HRTKAIVPVHY--AGVAC-DMDTIMALANKHQLFVIEDAAQGVMSTYKGRALGSI-GHLGTFSF 177 (376)
T ss_pred CCCCHHHHHHhcC---cCceEEEEeCC--CCCcc-CHHHHHHHHHHCCCEEEEECccccCCccCCcccCCC-CCEEEEeC
Confidence 6899999999997 78999987765 58777 89999999999999999999986432111 122332 48889998
Q ss_pred cccccccCCCCCCceEEEEEc-ccccCcCCC-CccccCCCCCCC-CC-CCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 792 HKTFCIPHGGGGPGMGPIGVK-KHLAPFLPS-HPVVSTGGIPAP-EK-SQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 792 hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~-~~~g~~~~~~~~-~~-~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
|++ +.+..||. +|+++++ +++.+.+.. +..|...+...+ .. ......+..++--....++...+.|. .
T Consensus 178 ~~~--K~l~~g~~-gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~-----~ 249 (376)
T TIGR02379 178 HET--KNYTSGGE-GGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLE-----Q 249 (376)
T ss_pred CCC--CcCcccCC-ceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHH-----H
Confidence 874 33333434 4555555 555443321 011111000000 00 00000010000001111122222232 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC--C-eeecC-CC--CceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC---
Q 001989 868 LTEASKIAILNANYMAKRLEKHY--P-ILFRG-VN--GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS--- 938 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g~--~-l~~~~-~~--~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~--- 938 (985)
+.+..++..+++++..++|.+.. . +..+. +. ....+.+.+.++ .+.+.+++.+.|.++||.+....
T Consensus 250 l~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~r~~l~~~L~~~gI~~~~~~~p~ 324 (376)
T TIGR02379 250 ADRINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFYIKLK-----DEDDRNELIKYLKEQEIMAVFHYVPL 324 (376)
T ss_pred hHHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEEEEEC-----CcCCHHHHHHHHHHCCCCccccCcCC
Confidence 44445555666777777776421 1 11111 11 122344555554 12467899999999999754211
Q ss_pred --CC------------------CCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 939 --WP------------------VPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 939 --~p------------------~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
.| ....+.+-++...|++|+++ .++++++++
T Consensus 325 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~--i~~~i~~~~ 375 (376)
T TIGR02379 325 HSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQAR--VIQTICDYL 375 (376)
T ss_pred CcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHHH--HHHHHHHHh
Confidence 11 02356776677899999999 777777653
No 351
>PRK07046 aminotransferase; Validated
Probab=99.64 E-value=1.8e-14 Score=168.79 Aligned_cols=329 Identities=15% Similarity=0.114 Sum_probs=198.7
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY 671 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~ 671 (985)
..||++++.+..+...+...-..+. .+. +...++.+.++++++++. ..+.+||++|++++++++|.|
T Consensus 87 ~~lGh~~p~i~~Av~~q~~~~~~~~--~~~----------~~~~~lAe~l~~~~~~~~-v~F~nSGtEA~e~AlrlAR~~ 153 (453)
T PRK07046 87 AMFGHSPAPVARALAEQARRGLTTM--LPS----------EDAAWVGEELARRFGLPY-WQVATTATDANRFVLRWARAV 153 (453)
T ss_pred cccCCCCHHHHHHHHHHHHhCCCCC--CCC----------HHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHHHHHHh
Confidence 4578887777766554432211111 111 223467888888887554 466899999999999999886
Q ss_pred HHhcCCCCCCEEEE-cCCCCcccHHHHHH------------CCc------EEEEEcCCCCCCCCHHHHHHHHHhcCCCEE
Q 001989 672 HKARGDHHRNVCII-PVSAHGTNPATAAM------------CGM------KIVSVGTDAKGNINIEELRKAAEANRDNLS 732 (985)
Q Consensus 672 ~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~------------~G~------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~ 732 (985)
+++++||. ...+||.+...... .|. .+..+|. .|++++++.+. +++++
T Consensus 154 ------TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----nd~~~l~~~l~--~~~vA 220 (453)
T PRK07046 154 ------TGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEF-----NDLAALEAALA--DGDVA 220 (453)
T ss_pred ------hCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCC-----CCHHHHHHHhC--CCCeE
Confidence 34667775 66799976443211 111 1233333 38999999985 36788
Q ss_pred EEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEcccc--ccccCCCCCCccCCcEEEeCCcccccccCCCCCCce
Q 001989 733 TLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANM--NAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGM 806 (985)
Q Consensus 733 ~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~--~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~ 806 (985)
+|+++-. ...|.+.++ ++++.++|+++|+++|+|+++. .+.++...--..-+|++++ .|.+ ++|-| +
T Consensus 221 avi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~~~~gv~PDi~t~--gK~l----ggG~P-i 293 (453)
T PRK07046 221 AVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYTRAHGLEPDFLVV--GKPI----AGGVP-C 293 (453)
T ss_pred EEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchhHHhCCCccceee--hhhh----cCCCc-c
Confidence 8888642 345666533 8999999999999999999985 2344331111223799875 3776 44445 6
Q ss_pred EEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh
Q 001989 807 GPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRL 886 (985)
Q Consensus 807 G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L 886 (985)
|.+++++++.+.+...... .........+++.|+++.++++.+.|..+..+++ .++..+..++|+++|
T Consensus 294 ~av~g~~~i~~~~~~~~~~---------~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~---~~~~~~~g~~l~~~L 361 (453)
T PRK07046 294 AVYGFSAELAERAQAAKAS---------APPGHSGIGTTLSANALAMAAMRATLAEVMTEAA---YAHMLALAARLAAGL 361 (453)
T ss_pred eeeeehHHHHHHHhhcccc---------CCCCCceeCCCCcccHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHH
Confidence 7777787766544211000 0000112234566788888888899988865443 446667788888888
Q ss_pred hc---cCC--eeecCCCCceeeEEEEEecCccc--c--CCCC---HHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCC
Q 001989 887 EK---HYP--ILFRGVNGTVAHEFIVDLRGLKN--T--AGIE---PEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESES 954 (985)
Q Consensus 887 ~~---g~~--l~~~~~~~~~~~~~iv~~~~~~~--~--~g~~---~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t 954 (985)
++ ..+ ..+.+. +..+ .+.+.-..... . ...+ ...+...|.++|+++... .+.++++++ +|
T Consensus 362 ~~l~~~~~~~~~v~g~-G~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~----~~~~~~~p~--~t 433 (453)
T PRK07046 362 RAVIARHGLPWHVTRV-GARV-EFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGVLITPF----HNMMLVCPA--TT 433 (453)
T ss_pred HHHHHhCCCCeEEEEe-CcEE-EEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCCEEecc----cCcEEEeCC--CC
Confidence 64 122 222221 2211 22221110000 0 0001 235667788899987432 256788875 89
Q ss_pred HHHHHHHHccCChhHHHHhhc
Q 001989 955 KSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 955 ~eeId~~~~~~~l~~~~~~~~ 975 (985)
++|||+ +++++++++.++.
T Consensus 434 ~~did~--~~~~~~~~l~~~~ 452 (453)
T PRK07046 434 AADVDR--LVAAFDACLGELL 452 (453)
T ss_pred HHHHHH--HHHHHHHHHHHHh
Confidence 999999 8899999887653
No 352
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.64 E-value=6.5e-14 Score=163.15 Aligned_cols=142 Identities=24% Similarity=0.253 Sum_probs=117.6
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
..+++.+|++.|.+. +.++.+|++++.++++++ +. +||+|+++...|+.....+...++..|++++++|. ++
T Consensus 67 ~~Le~~lA~leg~~~--al~~~sG~~Ai~~al~~l-l~--~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~~d~e~ 141 (431)
T PRK08248 67 DVFEKRIAALEGGIG--ALAVSSGQAAITYSILNI-AS--AGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDPSDPEN 141 (431)
T ss_pred HHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHH-hC--CCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECCCCHHH
Confidence 347789999999764 778899999888877665 33 89999999999998888887767789999999976 45
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccc
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGV 361 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~ 361 (985)
+++ ++++|++|++++| |++|.+.|+++|+++||++|++++|| +.++.+....|.++|+|+++.|+ |.+++
T Consensus 142 l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD-~t~a~~~~~~pl~~gaDivv~S~tK~lgg 214 (431)
T PRK08248 142 FEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVD-NTFASPYLLRPIEHGADIVVHSATKFIGG 214 (431)
T ss_pred HHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEe-CCCCccccCChhHcCCCEEEEcCccccCC
Confidence 556 7888999999887 88999999999999999999999995 34555555666789999999998 66654
No 353
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.63 E-value=3.4e-14 Score=165.29 Aligned_cols=230 Identities=21% Similarity=0.198 Sum_probs=154.8
Q ss_pred HHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC-c---hh
Q 001989 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD-L---KD 290 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~-~---~~ 290 (985)
++++.+|++.|.+. +.++.+|++++.++++++ .. +||+||++...|..+...+...++..|++++.++ . ++
T Consensus 73 ~Le~~lA~l~g~~~--av~~sSG~aAi~~al~al-l~--~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vdd~~d~e~ 147 (436)
T PRK07812 73 VVEQRIAALEGGVA--ALLLASGQAAETFAILNL-AG--AGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVEDPDDLDA 147 (436)
T ss_pred HHHHHHHHHhCCCe--EEEEccHHHHHHHHHHHH-hC--CCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEECCCCCHHH
Confidence 57789999999876 678889999888877765 23 8999999999998888777665567899999985 3 34
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++.+| |++|.+.|+++|+++||++|++++||+ .++.+.+..|.++|+|+++.|+ |.++++ |+
T Consensus 148 l~~ai~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~-t~a~~~~~~pl~~GaDivv~S~tK~lgg~---G~ 223 (436)
T PRK07812 148 WRAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDN-TIATPYLIRPLEHGADIVVHSATKYLGGH---GT 223 (436)
T ss_pred HHHhCCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEEC-CCcccccCCchhcCCCEEEEecccccCCC---CC
Confidence 555 7889999999987 789999999999999999999999953 5566666677889999999998 666532 22
Q ss_pred CcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceee----ec-------ccccccccccccCCCccchhHHHHHHHHHHH
Q 001989 368 PHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRV----AM-------QTREQHIRRDKATSNICTAQALLANMAAMYA 435 (985)
Q Consensus 368 P~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l----~l-------~tre~~irre~atsni~t~~~l~a~~aa~~l 435 (985)
.+|.+++. ..+...-+ .+..+..+ .+.|.- .+ +-+ ...++.-| +..++ . ..|+
T Consensus 224 -~i~G~vv~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G----~~l~p---~--~a~l 288 (436)
T PRK07812 224 -AIAGVIVDGGTFDWTQG-RFPGFTTP---DPSYHGVVFAELGPPAYALKAR-VQLLRDLG----SAISP---F--NAFL 288 (436)
T ss_pred -eEEEEEEcCCccccccc-cccccccC---CcccccchhhhcchhHHHHHHH-HHHHHhcC----CCCCH---H--HHHH
Confidence 23444443 32111111 11121111 000100 00 000 00111111 00011 1 1245
Q ss_pred HHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 001989 436 VYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 436 ~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
...|-+-+..+.++..++|..+++.|++.+.++
T Consensus 289 ~~rgl~tL~~R~~~~~~nA~~la~~L~~~p~v~ 321 (436)
T PRK07812 289 IAQGLETLSLRIERHVANAQRVAEFLEARDEVA 321 (436)
T ss_pred HhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 667777788888999999999999999985454
No 354
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=99.63 E-value=1e-13 Score=161.35 Aligned_cols=298 Identities=12% Similarity=0.065 Sum_probs=175.4
Q ss_pred HHHHHHHHHhC-----CCccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC
Q 001989 636 NLGEWLCTITG-----FDSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT 709 (985)
Q Consensus 636 e~~~~la~l~G-----~~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~ 709 (985)
++++.++++++ .+...+.. +++++|... +++.+. .++++|+++++.+..+...++..|++++.+++
T Consensus 77 ~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~~---~~~~l~-----~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~ 148 (401)
T TIGR01264 77 SAREAIASYYHNPDGPIEADDVVLCSGCSHAIEM---CIAALA-----NAGQNILVPRPGFPLYETLAESMGIEVKLYNL 148 (401)
T ss_pred HHHHHHHHHHhhcCCCCCHHHEEECcChHHHHHH---HHHHhC-----CCCCEEEEeCCCChhHHHHHHHcCCEEEEeec
Confidence 34455555554 33344444 444455433 333321 36789999988776666678889999999987
Q ss_pred CC--CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC--CCCCCc
Q 001989 710 DA--KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG--LTSPGY 781 (985)
Q Consensus 710 d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~--l~~pg~ 781 (985)
+. ++.+|+++|+++++ +++++|++++|+ ++|.+. .++++|.++|+++|+++++|+++..-. .+ +.....
T Consensus 149 ~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~ 225 (401)
T TIGR01264 149 LPDKSWEIDLKQLESLID---EKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLAS 225 (401)
T ss_pred CCccCCCCCHHHHHHHhc---cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHH
Confidence 54 46899999999887 678899999994 799885 258999999999999999999874211 11 100011
Q ss_pred cCC---cEEEeCCcccccccCCCCCCceEEEEEccc------ccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 782 IGA---DVCHLNLHKTFCIPHGGGGPGMGPIGVKKH------LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 782 ~g~---Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~------l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
+.. -|++.|+.|+|++| |.++|++++.+. +...+... .. ...++++ ..+.
T Consensus 226 ~~~~~~vi~~~SfSK~~~~~----GlRiG~iv~~~~~~~~~~~~~~~~~~------------~~-~~~~~~~--~~q~-- 284 (401)
T TIGR01264 226 LSSTVPILSCGGLAKRWLVP----GWRLGWIIIHDRRGILRDIRDGLVKL------------SQ-RILGPCT--IVQG-- 284 (401)
T ss_pred cCCCCcEEEEccCcccCCCc----cceEEEEEecCcchhHHHHHHHHHHH------------hh-ccCCCCc--HHHH--
Confidence 111 25677888887654 788999998641 11111100 00 0011111 1121
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCC
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYG 931 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~G 931 (985)
++..+|.....+-+++..+...++.+++.+.|++..++.+..+.+..+ +.++++........+..+++++|. ++|
T Consensus 285 --a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f--~~~~~~~~~~~~~~~~~~~~~~l~~~~g 360 (401)
T TIGR01264 285 --ALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLRPVMPSGAMY--MMVGIEMEHFPEFKNDVEFTERLVAEQS 360 (401)
T ss_pred --HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeeE--EEEEecccccCCCCCHHHHHHHHHHhCC
Confidence 122333321233445555566777888888887621222212222222 234443100001134678888875 689
Q ss_pred CccCCC-CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 932 FHGPTM-SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 932 i~~~~~-~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
|.+... .|..++++||++.. +.++++. .++.|.+.+++
T Consensus 361 I~v~pg~~f~~~~~iRis~~~--~~~~l~~--~l~rl~~~~~~ 399 (401)
T TIGR01264 361 VFCLPGSCFEYPGFFRVVLTV--PVVMMEE--ACSRIQEFCER 399 (401)
T ss_pred EEEeCchhcCCCCeEEEEEcC--CHHHHHH--HHHHHHHHHhc
Confidence 986532 23345899999974 4788888 66777776654
No 355
>PRK07582 cystathionine gamma-lyase; Validated
Probab=99.63 E-value=3e-14 Score=163.17 Aligned_cols=269 Identities=15% Similarity=0.109 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
..++++.++++.+ ...+.+++|+.|+.+++.++ . +++|+||+++..|+..... +...|++++.++.
T Consensus 53 ~~~Le~~lA~l~~--~~~v~~~sG~~Ai~~~l~al---l-----~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~ 122 (366)
T PRK07582 53 WRALEAALGELEG--AEALVFPSGMAAITAVLRAL---L-----RPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPT 122 (366)
T ss_pred HHHHHHHHHHHcC--CCEEEECCHHHHHHHHHHHh---c-----CCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECC
Confidence 3478889999982 33456677877664444332 1 4778999987655443332 2457999999987
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
++++ + .+. +++++|++++|+ ++|.+. |+++|+++||++|++++||+++....+ ..|.++++|+++
T Consensus 123 ~~~~-------~-~~~---~~t~lV~le~p~NPtg~v~-di~~I~~~a~~~g~~lvVD~t~~~~~~--~~p~~~g~Divv 188 (366)
T PRK07582 123 AGMA-------E-AAL---AGADLVLAETPSNPGLDVC-DLAALAAAAHAAGALLVVDNTTATPLG--QRPLELGADLVV 188 (366)
T ss_pred CChH-------H-Hhc---cCceEEEEECCCCCCCCcc-CHHHHHHHHHHcCCEEEEECCCCCccc--cCchhcCCcEEE
Confidence 5321 1 233 689999999995 688777 899999999999999999998742222 246678999999
Q ss_pred eCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.|+||+++.+ +|-.+|+++++ +++.+.+.... ..++...+ + ..+|..+..+ +-
T Consensus 189 ~S~sK~l~G~---~g~~~G~v~~~~~~l~~~l~~~~-------------~~~g~~~~-----~---~~a~l~~r~l--~t 242 (366)
T PRK07582 189 ASDTKALTGH---SDLLLGYVAGRDPELMAAVERWR-------------LLAGAIPG-----P---FEAWLAHRSL--GT 242 (366)
T ss_pred ecccccccCC---CCeeEEEEEcCcHHHHHHHHHHH-------------HHhCCCCC-----H---HHHHHHHhcc--cc
Confidence 9999998421 22346888875 44444332100 00111111 1 1234333333 34
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC---CeeecCCC-Cc-----------eeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 868 LTEASKIAILNANYMAKRLEKHY---PILFRGVN-GT-----------VAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g~---~l~~~~~~-~~-----------~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
+..+.++..+++..+++.|++.. .+.+++-. .+ ....+.+.++ +.+++.+.|...++
T Consensus 243 l~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~--------~~~~~~~~~~~l~~ 314 (366)
T PRK07582 243 LGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA--------DAAAAERFVAASRL 314 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC--------CHHHHHHHHHhCCc
Confidence 56667888899999999998743 33444311 11 1112333332 35666666666666
Q ss_pred ccCCCCC---------C------C-CCEEEEeccCCCCHHHHHH
Q 001989 933 HGPTMSW---------P------V-PGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 933 ~~~~~~~---------p------~-~~~lris~t~~~t~eeId~ 960 (985)
.....++ + + ++.||+|+...++++.|+.
T Consensus 315 ~~~~~s~G~~~sl~~~~~~~~~~~~~~liR~svGlE~~~dli~d 358 (366)
T PRK07582 315 VVAATSFGGVHTSADRRARWGDAVPEGFVRLSCGIEDTDDLVAD 358 (366)
T ss_pred ceecccCCCccchhhhHHHcCCCCCCCeEEEEeccCCHHHHHHH
Confidence 5321110 1 1 3679999999988888888
No 356
>PRK06107 aspartate aminotransferase; Provisional
Probab=99.63 E-value=3.6e-14 Score=165.04 Aligned_cols=307 Identities=15% Similarity=0.104 Sum_probs=187.6
Q ss_pred hhHHHHHHHHHHHHHHHhCCCc--cceecCcH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDS--FSLQPNAG-AAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~--~~~~~~sG-a~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+.+.+++++.+|.+. .++..++| ++|...++. .. .++++.|+++++.++.+.......|.++
T Consensus 70 ~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~---~~-----~~~gd~vl~~~p~y~~y~~~~~~~~~~~ 141 (402)
T PRK06107 70 NGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALM---AT-----LEAGDEVIIPAPYWVSYPDMVLANDGTP 141 (402)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHH---Hh-----cCCCCEEEEecCCCcCHHHHHHHcCCEE
Confidence 6777777888888888888743 34555555 455533332 22 1468899999988888877777888888
Q ss_pred EEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHc-CCEEEEEcccccc-ccC--
Q 001989 705 VSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDN-GGQVYMDGANMNA-QVG-- 775 (985)
Q Consensus 705 v~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~-galliVD~a~~~~-~~~-- 775 (985)
+.++++. ++.+|+++|+++++ +++++|++++| |++|.+. .++++|+++|+++ |+++++|.++..- ...
T Consensus 142 ~~v~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~ 218 (402)
T PRK06107 142 VIVACPEEQGFKLTPEALEAAIT---PRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEP 218 (402)
T ss_pred EEecCCcccCCCCCHHHHHhhcC---cCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCC
Confidence 8888753 35799999999987 68889999998 5799885 2478888899998 9999999987310 011
Q ss_pred CCC-----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhh
Q 001989 776 LTS-----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 776 l~~-----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~ 850 (985)
+.. ++..+--+++.|++|.|+.| |.++|++++++++...+.... .......+ ...+.
T Consensus 219 ~~~~~~~~~~~~~~vi~~~S~SK~~~~p----GlRiG~~~~~~~~~~~~~~~~------------~~~~~~~s--~~~q~ 280 (402)
T PRK06107 219 TPHLLAAAPELRDRVLVTNGVSKTYAMT----GWRIGYAAGPADLIAAINKLQ------------SQSSSCPS--SISQA 280 (402)
T ss_pred CCCHHHhCcCccCCEEEEeccchhhcCc----ccceeeeecCHHHHHHHHHHH------------HhcccCCC--hHHHH
Confidence 100 11111235677889998654 568899998877654432110 00001111 11121
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCc---cccCC---CCHHHHH
Q 001989 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGL---KNTAG---IEPEDVA 924 (985)
Q Consensus 851 ~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~---~~~~g---~~~~~v~ 924 (985)
++..+|. -+..-+++..+...++.+++.+.|++..++.+..+.+.++ +.++++.+ ....+ .+..+++
T Consensus 281 ----~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~p~gg~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (402)
T PRK06107 281 ----AAAAALN-GDQSFVTESVAVYKQRRDYALALLNAIPGLSCLVPDGAFY--LYVNCAGLIGKTTPEGKVLETDQDVV 353 (402)
T ss_pred ----HHHHHhc-CChHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceE--EeeecccccccccccccCCCCHHHHH
Confidence 1112222 1233344445556777788888887621222222223222 23343211 00011 1456777
Q ss_pred HHH-HHCCCccCC-CCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 925 KRL-MDYGFHGPT-MSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 925 ~~L-~~~Gi~~~~-~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+.| .++||.+.. ..|...+++||++.. +.|++++ .++.|++.+.++
T Consensus 354 ~~l~~~~gv~v~pg~~Fg~~~~iRis~~~--~~e~l~~--~l~~l~~~l~~~ 401 (402)
T PRK06107 354 LYLLDSAGVAVVQGTAYGLSPYFRLSIAT--SLETLEE--ACARIERAVAAL 401 (402)
T ss_pred HHHHHhCCEEEeCccccCCCCeEEEEeCC--CHHHHHH--HHHHHHHHHHhc
Confidence 665 567998653 334446899999984 6899999 778888777654
No 357
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.63 E-value=2.3e-14 Score=166.85 Aligned_cols=322 Identities=13% Similarity=0.108 Sum_probs=191.7
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~air~ 670 (985)
..||++++.+..+...+......+. .+ . +...++.+.|+++++.. ...++.+||++|++++++.+|.
T Consensus 65 ~~lGh~~p~v~~ai~~q~~~~~~~~--~~-~---------~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~ 132 (433)
T PRK00615 65 LIHGHSHPKICDAIQQGAERGTSYG--LT-S---------EQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARG 132 (433)
T ss_pred cccCCCCHHHHHHHHHHHHhCCCCC--CC-C---------HHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHH
Confidence 4688888777766544432211111 11 1 12346778888887643 2456779999999999999887
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHH---HHHHCCc----------------EEEEEcCCCCCCCCHHHHHHHHHhcCCC
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPA---TAAMCGM----------------KIVSVGTDAKGNINIEELRKAAEANRDN 730 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~---~a~~~G~----------------~vv~v~~d~~g~iD~e~L~~~i~~~~~~ 730 (985)
| +++.+||. ...+||.... .....+- ....++ ..|++++++.+.++.++
T Consensus 133 ~------tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~l~~~l~~~~~~ 201 (433)
T PRK00615 133 I------TGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLP-----YNDFQIFQTVMNSLGHR 201 (433)
T ss_pred h------hCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCC-----CCCHHHHHHHHHhcCCc
Confidence 6 24556765 6679996522 1111110 011112 23889999999765567
Q ss_pred EEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccc--cCCCCCCc--cCCcEEEeCCcccccccCCCC
Q 001989 731 LSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQ--VGLTSPGY--IGADVCHLNLHKTFCIPHGGG 802 (985)
Q Consensus 731 t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~--~~l~~pg~--~g~Di~~~s~hK~l~~p~g~G 802 (985)
+++|+++.. +..|.+.++ +++|.++|+++|+++|+|++|. +. +.+..... ..+|++++ .|.+ ++|
T Consensus 202 ~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G~R~G~~ga~~~~gv~PDi~~~--gK~l----ggG 274 (433)
T PRK00615 202 VAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVT-GFRVAQGGAAAIYHVKPDITVY--GKIL----GGG 274 (433)
T ss_pred eEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-cccccHhHHHHhcCCCCCeEEE--cccc----cCC
Confidence 788877653 345776521 5699999999999999999883 32 11100111 23788875 3776 334
Q ss_pred CCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 001989 803 GPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYM 882 (985)
Q Consensus 803 GPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l 882 (985)
-| +|.+++++++.+.+... + ...+.+++.|+++.++++.+.|..+..+.+ .++..++.++|
T Consensus 275 ~p-~~av~~~~~i~~~~~~~--~-------------~~~~~~T~~g~p~~~aa~la~L~~i~~~~~---~~~~~~~g~~l 335 (433)
T PRK00615 275 LP-AAAVVAHKSIMDHLAPE--G-------------TIFQAGTLSGNPLAMAAGKASINLCREQGF---YTQLSTLEQNF 335 (433)
T ss_pred cc-eeeeeecHHHHhhhcCC--C-------------CcccCCCCcccHHHHHHHHHHHHHHhcccH---HHHHHHHHHHH
Confidence 35 56677787776655211 0 001122344577778888888988876544 44666777888
Q ss_pred HHHhhc-----cCCeeecCCCCceeeEEEEEecCccccCC---------CCHHHHHHHHHHCCCccCCCCCCCCCEEEEe
Q 001989 883 AKRLEK-----HYPILFRGVNGTVAHEFIVDLRGLKNTAG---------IEPEDVAKRLMDYGFHGPTMSWPVPGTLMIE 948 (985)
Q Consensus 883 ~~~L~~-----g~~l~~~~~~~~~~~~~iv~~~~~~~~~g---------~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris 948 (985)
.++|++ ++.+.... .+. + +.+.+..- ...+ .....+.+.|.++|+++....+|. ..
T Consensus 336 ~~~l~~~~~~~g~~v~~~r-~G~-~--~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~-----~~ 405 (433)
T PRK00615 336 LSPIEEMIRSQGFPVSLVR-YGS-M--FSFFFNEN-RPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPFEA-----SF 405 (433)
T ss_pred HHHHHHHHHHcCCCeEEEe-ece-E--EEEEEeCC-CCCChHHHhhCCHHHHHHHHHHHHHCCeeecCccccc-----cc
Confidence 777754 23332211 121 1 22222100 0000 012368888999999886544331 14
Q ss_pred ccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 949 PTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 949 ~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
++..+|++|||+ ++++++++++..
T Consensus 406 ls~~ht~~did~--~~~a~~~~~~~~ 429 (433)
T PRK00615 406 LSSAHSMENLDY--AQNVLIDSLEKV 429 (433)
T ss_pred eecCCCHHHHHH--HHHHHHHHHHHH
Confidence 556689999999 889999888764
No 358
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=99.63 E-value=2.3e-14 Score=164.79 Aligned_cols=288 Identities=14% Similarity=0.126 Sum_probs=180.7
Q ss_pred hHHHHHHHHHHHHHHHhCC--CccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEE
Q 001989 629 GYQEMFNNLGEWLCTITGF--DSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~--~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv 705 (985)
|..++.+.+.+++.+..|. +...+..++|++ +. .++++.+. .+++.|+++.+.+..+...++..|.+++
T Consensus 66 g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l---~~~~~~~~-----~~gd~v~v~~P~y~~~~~~~~~~g~~~~ 137 (368)
T PRK03317 66 DAVALRADLAAYLTAQTGVGLTVENVWAANGSNEIL---QQLLQAFG-----GPGRTALGFVPSYSMHPIIARGTHTEWV 137 (368)
T ss_pred chHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHH---HHHHHHhc-----CCCCEEEEeCCChHHHHHHHHhcCCeeE
Confidence 5444444444555444454 445566666654 33 23333332 4778999988877667777788999998
Q ss_pred EEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEcccccc-ccCCCCCC---
Q 001989 706 SVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNA-QVGLTSPG--- 780 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~-~~~l~~pg--- 780 (985)
.++.++++.+|++++++++++ .++++|++++| |++|.+. +.+++.++++..++++++|+++..- ..+.....
T Consensus 138 ~~~~~~~~~~d~~~l~~~~~~--~~~~~i~l~~p~NPtG~~~-~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~ 214 (368)
T PRK03317 138 EGPRAADFTLDVDAAVAAIAE--HRPDVVFLTSPNNPTGTAL-PLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLL 214 (368)
T ss_pred EcccCCCCCCCHHHHHHHHhc--cCCCEEEEeCCCCCCCCCC-CHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHH
Confidence 888766778999999999973 36778889999 4699998 8999999999999999999998421 01110000
Q ss_pred ccCCc-EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHH
Q 001989 781 YIGAD-VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 781 ~~g~D-i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~ 859 (985)
....+ +++.|+.|.|++ .|.++|++++++++...+.... ...+++ .....++.++
T Consensus 215 ~~~~~~i~~~SfSK~~g~----~GlRiG~~~~~~~~~~~l~~~~--------------~~~~~s------~~~~~a~~~~ 270 (368)
T PRK03317 215 PEYPRLVVSRTMSKAFAF----AGGRLGYLAAAPAVVDALRLVR--------------LPYHLS------AVTQAAARAA 270 (368)
T ss_pred HhCCCEEEEEechhhhcc----chhhhhhhhCCHHHHHHHHhcC--------------CCCCCC------HHHHHHHHHH
Confidence 01124 456678888754 3678899998877665442110 001111 1112222233
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC
Q 001989 860 IAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS 938 (985)
Q Consensus 860 l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~ 938 (985)
+.. .+.+.+..++..++.+++.+.|++ ++.+ ..+.+.++ ++..+ .+..++.+.|.++||.+....
T Consensus 271 l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~--~~~~~~~~--~~~~~--------~~~~~~~~~l~~~Gv~v~~~~ 336 (368)
T PRK03317 271 LRH--ADELLASVAALRAERDRVVAWLRELGLRV--APSDANFV--LFGRF--------ADRHAVWQGLLDRGVLIRDVG 336 (368)
T ss_pred hhC--HHHHHHHHHHHHHHHHHHHHHHHHCCCEe--CCCCCcEE--EEecc--------CCHHHHHHHHHHCCEEEEeCC
Confidence 332 233444445566677788888876 4432 22222221 12222 146789999999999886543
Q ss_pred CCCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 939 WPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 939 ~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
. ++++||++ .+.+|+++ ++++|+++++
T Consensus 337 ~--~~~iRi~~---~~~~~~~~--~~~~l~~~~~ 363 (368)
T PRK03317 337 I--PGWLRVTI---GTPEENDA--FLAALAEVLA 363 (368)
T ss_pred C--CCeEEEec---CCHHHHHH--HHHHHHHHHH
Confidence 2 48999997 47899999 7788887764
No 359
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=99.63 E-value=1.3e-14 Score=154.88 Aligned_cols=347 Identities=18% Similarity=0.183 Sum_probs=207.5
Q ss_pred HHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc----cceec
Q 001989 579 LLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS----FSLQP 654 (985)
Q Consensus 579 ~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~----~~~~~ 654 (985)
-++++|+....-|-.|||| -.|.+.|-.|-.+ ||--. | =.-++..-+|+..-+.||+|+ +++++
T Consensus 45 LIaSENFts~aVmeAlGS~--ltNKYSEGyPG~R-----YYGGn--e---~ID~iE~LCq~RALeaF~ldp~kWGVNVQp 112 (477)
T KOG2467|consen 45 LIASENFTSRAVMEALGSC--LTNKYSEGYPGAR-----YYGGN--E---YIDQIELLCQKRALEAFGLDPEKWGVNVQP 112 (477)
T ss_pred EeecccchHHHHHHHHhHH--hhcccccCCCccc-----ccCcc--h---HHHHHHHHHHHHHHHHhCCCHHHCceeecc
Confidence 3566665544445567876 3344555544221 22111 1 112223334556667899987 47999
Q ss_pred CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCccc---HHHH---HHCC----cEEEEEcCCC-CCCCCHHHHHHH
Q 001989 655 NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN---PATA---AMCG----MKIVSVGTDA-KGNINIEELRKA 723 (985)
Q Consensus 655 ~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~---~~~a---~~~G----~~vv~v~~d~-~g~iD~e~L~~~ 723 (985)
.||+-|++++..|+. .++++|.--+.-||.| .... +... ++-..+.+|+ .|-+|.|.|++.
T Consensus 113 ~SGSPANfavYtall--------~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~ 184 (477)
T KOG2467|consen 113 YSGSPANFAVYTALL--------KPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTGYIDYDKLEKT 184 (477)
T ss_pred CCCCchhhHHHhhhc--------CCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCCceehHHHHHH
Confidence 999999988877764 4778888655545543 2221 1111 1222234454 599999999988
Q ss_pred HHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccc---cCCCCCCccCCcEEEeCCcccccccCC
Q 001989 724 AEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ---VGLTSPGYIGADVCHLNLHKTFCIPHG 800 (985)
Q Consensus 724 i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~---~~l~~pg~~g~Di~~~s~hK~l~~p~g 800 (985)
.... +.++|+.....+.-.+ |.+.+.++|.+.|+.+++|.||..++ +...+|.++ +||++.+.||+|
T Consensus 185 A~~f--rPk~iiaG~SaY~R~~--DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey-~DiVTTTTHKsL----- 254 (477)
T KOG2467|consen 185 ATLF--RPKLIIAGTSAYSRLI--DYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEY-CDIVTTTTHKSL----- 254 (477)
T ss_pred HHhc--CCcEEEeccccchhhc--cHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccc-cceeeccccccc-----
Confidence 7644 3444555443444444 79999999999999999999994333 233456554 899999999998
Q ss_pred CCCCceEEEEEcccccCcCCCC--ccccC-CCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHH
Q 001989 801 GGGPGMGPIGVKKHLAPFLPSH--PVVST-GGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAIL 877 (985)
Q Consensus 801 ~GGPg~G~i~~~~~l~~~lp~~--~~g~~-~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~ 877 (985)
.||++|+|..|+.....-+.. -+... .+.+... .++..-+.+.... +++.| .+|..-....++++.++...
T Consensus 255 -RGPRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfa---VFP~lQGGPHNht-IaalA-vALkQa~tpefk~Yq~qV~~ 328 (477)
T KOG2467|consen 255 -RGPRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFA---VFPGLQGGPHNHT-IAALA-VALKQAMTPEFKEYQKQVLK 328 (477)
T ss_pred -cCCcceeEEEeccCCcCCCCCCCcceechhhhhhhh---ccccccCCCCcch-HHHHH-HHHHhhCCHHHHHHHHHHHH
Confidence 799999999987554333221 00000 0000000 0000000011011 11222 23444455668999999999
Q ss_pred HHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC------CCCCCCEEEEecc
Q 001989 878 NANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM------SWPVPGTLMIEPT 950 (985)
Q Consensus 878 ~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~------~~p~~~~lris~t 950 (985)
|++.|.++|.+ |++++..| ...|.+++++++ .|++...+-+-|..-+|.++.. +.-.++.|||.-+
T Consensus 329 Nakala~~l~~~Gy~lvtgG---TDnHlvLvDLr~----~G~dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtP 401 (477)
T KOG2467|consen 329 NAKALASALISRGYKLVTGG---TDNHLVLVDLRP----KGVDGARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTP 401 (477)
T ss_pred HHHHHHHHHHHcCceEecCC---ccceEEEEeccc----cCCchHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccch
Confidence 99999999987 88887543 456778899874 5788777777676667765421 1113689999765
Q ss_pred CCC----CHHHHHHHHccCChhHH
Q 001989 951 ESE----SKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 951 ~~~----t~eeId~~~~~~~l~~~ 970 (985)
..+ .++|.++ ..+-|.+.
T Consensus 402 AmTsRG~~e~df~~--v~~fi~~a 423 (477)
T KOG2467|consen 402 AMTSRGFGEEDFEK--VADFIDRA 423 (477)
T ss_pred hhcccCccHHHHHH--HHHHHHHH
Confidence 443 4567666 44444443
No 360
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=99.63 E-value=6.7e-14 Score=164.44 Aligned_cols=328 Identities=15% Similarity=0.217 Sum_probs=195.6
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc----cceecCcHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS----FSLQPNAGAAGEYAGLMV 667 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~----~~~~~~sGa~a~~a~l~a 667 (985)
..+|+|++.+..+...+......+.+.. +. .+...++.+.++++++... ..|+.+||++|++++++.
T Consensus 70 ~~lGH~~p~v~~Ai~~q~~~~~~~~~~~-~~--------~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~Alkl 140 (459)
T PRK06931 70 LALGHNHPDVLQSIQDVLTSGLPLHTLD-LT--------TPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKL 140 (459)
T ss_pred ccCCCCCHHHHHHHHHHHhhhccccccc-cC--------CHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHH
Confidence 4689998888776555432211111110 11 1234467788888875321 235558999999999999
Q ss_pred HHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCCCC--------CCCHHHH----HH
Q 001989 668 IRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDAKG--------NINIEEL----RK 722 (985)
Q Consensus 668 ir~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~~g--------~iD~e~L----~~ 722 (985)
+|.| +++++||. ...+||....+....| ..+..+|.+... .-+.+++ ++
T Consensus 141 Ar~~------tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (459)
T PRK06931 141 AKTY------TGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFEN 214 (459)
T ss_pred HHHh------cCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHH
Confidence 9876 24566775 6789998866653211 123444432111 1123433 33
Q ss_pred HHHh---cCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc--------CCcEE
Q 001989 723 AAEA---NRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVC 787 (985)
Q Consensus 723 ~i~~---~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~--------g~Di~ 787 (985)
.+++ ..+++++|+++-. ...|++.+ -+++|.++|+++|+++|+|+++ .|+.+.|.+ -+|++
T Consensus 215 ~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~----tGfGRtG~~~a~~~~gv~PDiv 290 (459)
T PRK06931 215 FIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQ----AGFARTGKMFAFEHAGIEPDII 290 (459)
T ss_pred HHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecch----hcCCcCchHHHhhhcCCCCCEE
Confidence 3331 2245888888642 34566542 3899999999999999999886 445455532 27998
Q ss_pred EeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
+++ |.+ ++|-| +|.++.++++ +.+... ...+++.|+++.++++.+.|..+..++
T Consensus 291 t~g--K~l----~gG~P-i~av~~~~~~-~~~~~~------------------~~~~T~~gnpla~aaala~L~~l~~~~ 344 (459)
T PRK06931 291 VMS--KAV----GGGLP-LAVLGIKKEF-DAWQPG------------------GHTGTFRGNQLAMATGLTTLKILKEEN 344 (459)
T ss_pred Eec--ccc----cCCcc-eeeeeeHHHH-hhccCC------------------CCCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 774 766 44445 4556666554 222110 012345567888888889999887765
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCcccc------CC---CCHHHHHHHHHHCCCc
Q 001989 868 LTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGLKNT------AG---IEPEDVAKRLMDYGFH 933 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~~~~------~g---~~~~~v~~~L~~~Gi~ 933 (985)
+. ++..+..++|.++|++. ++++ +.+. + .+. -+.+..-... .. .-...+.+.|.++|++
T Consensus 345 l~---~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~-G-lm~--giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl 417 (459)
T PRK06931 345 LA---QNAAERGEWLKAQLAELQKRYPCIGNVRGR-G-LMI--GIEIVDERQPADAMGSYPADGELAAAIQKACFENGLL 417 (459)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHhCCCeEeEecC-c-eEE--EEEEccCcccccccccCCccHHHHHHHHHHHHHCCcE
Confidence 54 45667778888888652 2321 1121 2 221 2222100000 00 0134677788899998
Q ss_pred cCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 934 GPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 934 ~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+..... ..+.+|+.|+...|++|||. +++++++++..+
T Consensus 418 ~~~~~~-~~~~l~~~Ppl~it~~eid~--~~~~l~~~l~~~ 455 (459)
T PRK06931 418 LERGGR-NGNVVRLLPPLLITQAECEE--FIDRFEQALLAA 455 (459)
T ss_pred EeecCC-CCCEEEEECCCCcCHHHHHH--HHHHHHHHHHHH
Confidence 743211 14789999999999999999 889999888764
No 361
>PRK07503 methionine gamma-lyase; Provisional
Probab=99.63 E-value=2.8e-14 Score=165.40 Aligned_cols=212 Identities=19% Similarity=0.195 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+.. +.+++|+.|...++.++ ..+||+||++...|+.... .+...|++++.++.
T Consensus 67 ~~~le~~lA~l~g~~~~-i~~~sG~~Al~~~l~~l--------l~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 137 (403)
T PRK07503 67 LALLEQRMASLEGGEAA-VALASGMGAITATLWTL--------LRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDL 137 (403)
T ss_pred HHHHHHHHHHHhCCCcE-EEEcCHHHHHHHHHHHH--------cCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCC
Confidence 45788999999998764 55667887664444322 1478999998877764322 24568999999987
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++++++++ ++|++|++++| |++|.+. |+++|+++|+++|+++++|+++..+. ...|..+++|+++
T Consensus 138 ~-----d~~~l~~~i~---~~tklV~le~p~NPtG~~~-di~~I~~la~~~gi~lIvD~a~a~~~--~~~~l~~g~Di~v 206 (403)
T PRK07503 138 T-----DPAALKAAIS---DKTRMVYFETPANPNMRLV-DIAAVAEIAHGAGAKVVVDNTYCTPY--LQRPLELGADLVV 206 (403)
T ss_pred C-----CHHHHHHhcC---ccCcEEEEeCCCCCCCeee-CHHHHHHHHHHcCCEEEEECCCcccc--cCCchhhCCCEEE
Confidence 4 8999999997 78999999998 5799998 89999999999999999999985332 2345567899999
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
.|++|+++.+ |+..+|+++.++++...+... +. + ..++...+ + ..+|..+. +-+-+
T Consensus 207 ~S~tK~l~g~---gd~~gG~v~~~~~l~~~l~~~--~~--------~-~~~g~~~s-----~---~~a~l~l~--~L~tl 262 (403)
T PRK07503 207 HSATKYLGGH---GDITAGLVVGGKALADRIRLE--GL--------K-DMTGAVMS-----P---FDAFLLMR--GLKTL 262 (403)
T ss_pred ccccccccCC---CceeEEEEEcCHHHHHHHHhh--hH--------H-hCcCCCCC-----H---HHHHHHHc--CcchH
Confidence 9999998521 223478888777665544211 00 0 01111111 1 11233333 33445
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 001989 869 TEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g 889 (985)
..+.++..+++..+.+.|++.
T Consensus 263 ~~r~~~~~~na~~~a~~L~~~ 283 (403)
T PRK07503 263 ALRMDRHCASAQAVAEWLARH 283 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 566677788999999999863
No 362
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.63 E-value=6.3e-14 Score=163.07 Aligned_cols=144 Identities=22% Similarity=0.259 Sum_probs=115.5
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC-c---
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD-L--- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~-~--- 288 (985)
..++++.+|++.|.+ ....+.+|++++.++++++ + ++||+||++...|.++...+...++..|++++++| .
T Consensus 71 ~~~le~~la~l~g~~--~~v~fsSG~~Ai~~al~~l-l--~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~~d~ 145 (437)
T PRK05613 71 VEALENRIASLEGGV--HAVAFASGQAAETAAILNL-A--GAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVENPDDP 145 (437)
T ss_pred HHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHh-c--CCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEECCCCCH
Confidence 556889999999985 3667777777777766654 2 38999999999999987666555667899999986 3
Q ss_pred hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecCcccccc
Q 001989 289 KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSAQRFGVP 362 (985)
Q Consensus 289 ~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~k~lg~P 362 (985)
+++++ ++++|++|++.++ |.+|.+.||++|+++||++|++++||+ .++.|.+..|.++|+|++++|++|+.++
T Consensus 146 e~l~~~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~-t~a~g~~~~p~~~GaDivv~S~~K~l~G 220 (437)
T PRK05613 146 ESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDN-TIATAALVRPLELGADVVVASLTKFYTG 220 (437)
T ss_pred HHHHHhCCccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEEC-CCccccccChHHhCCCEEEeeccceecC
Confidence 45666 8889998888765 889999999999999999999999953 5566766778899999999999445333
No 363
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=99.63 E-value=7.9e-14 Score=162.73 Aligned_cols=307 Identities=11% Similarity=0.068 Sum_probs=181.5
Q ss_pred hhHHHHHHHHHHHHHHHhC--------CCccceecCcH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHH
Q 001989 628 QGYQEMFNNLGEWLCTITG--------FDSFSLQPNAG-AAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA 698 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G--------~~~~~~~~~sG-a~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~ 698 (985)
+|..++.+.+.+++.+.++ .+...+..++| +++... +++.+. .++++|+++.+.|..+...++
T Consensus 75 ~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~---~~~~~~-----~~gd~vlv~~P~y~~~~~~~~ 146 (412)
T PTZ00433 75 VGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILM---ALTALC-----DEGDNILVPAPGFPHYETVCK 146 (412)
T ss_pred CCcHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHH---HHHHhc-----CCCCEEEEccCCcccHHHHHH
Confidence 5655555555555544332 33444545444 445433 333321 467899999988878878888
Q ss_pred HCCcEEEEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc
Q 001989 699 MCGMKIVSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 699 ~~G~~vv~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~ 773 (985)
..|++++.+|.++ ++.+|+++|+++++ +++++|++++| |++|.+. .++++|.++|+++|+++++|+++..-.
T Consensus 147 ~~g~~~~~i~~~~~~~~~~d~~~l~~~~~---~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~ 223 (412)
T PTZ00433 147 AYGIEMRFYNCRPEKDWEADLDEIRRLVD---DRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMV 223 (412)
T ss_pred HcCCEEEEEecCccccCcCCHHHHHHHhc---cCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccc
Confidence 9999999999854 46899999999887 68899999999 5699864 258888999999999999999874211
Q ss_pred -cC--CCCCCcc---CCcEEEeCCcccccccCCCCCCceEEEEEc-c-----cccCcCCCCccccCCCCCCCCCCCCCCC
Q 001989 774 -VG--LTSPGYI---GADVCHLNLHKTFCIPHGGGGPGMGPIGVK-K-----HLAPFLPSHPVVSTGGIPAPEKSQPLGT 841 (985)
Q Consensus 774 -~~--l~~pg~~---g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~-----~l~~~lp~~~~g~~~~~~~~~~~~~~~~ 841 (985)
.+ +.....+ ..-+++.|+.|+|+.| |.++|++++. + ++...+... . ....+
T Consensus 224 ~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~p----GlRlG~~i~~~p~~~~~~~~~~~~~~--~-----------~~~~~ 286 (412)
T PTZ00433 224 FNGATFTSVADFDTTVPRVILGGTAKNLVVP----GWRLGWLLLVDPHGNGGDFLDGMKRL--G-----------MLVCG 286 (412)
T ss_pred cCCCCccchhhccCCCceEEEccchhhcCCC----CeeEEEEEEeCCcccHHHHHHHHHHH--h-----------hccCC
Confidence 11 0000111 1126677888888654 7899999972 2 222221100 0 00011
Q ss_pred CCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCC-CCH
Q 001989 842 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAG-IEP 920 (985)
Q Consensus 842 i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g-~~~ 920 (985)
+++ ....++..++..-..+-+++..+...++.+++.+.|++...+.+..+.+..+ +.+.++.-.. .+ .+.
T Consensus 287 ~~~------~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~f--~~~~l~~~~~-~~~~~~ 357 (412)
T PTZ00433 287 PCS------VVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPRGSMF--LMSRLDLEKF-RDIKSD 357 (412)
T ss_pred CCh------HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeEE--EEEEechhhc-CCCCCH
Confidence 111 1111112223221123344455566777888888887622222222222222 2344431000 01 246
Q ss_pred HHHHHHHHH-CCCccCCC-CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 921 EDVAKRLMD-YGFHGPTM-SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 921 ~~v~~~L~~-~Gi~~~~~-~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+++++|.+ +||.+... .|..++++||++.. ..+++++ .++.|.+.+++.+
T Consensus 358 ~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~~--~~e~l~~--al~~l~~~~~~~~ 410 (412)
T PTZ00433 358 VEFYEKLLEEENVQVLPGEIFHMPGFTRLTISR--PVEVLRE--AVERIKAFCERHK 410 (412)
T ss_pred HHHHHHHHHhcCEEEeCccccCCCCeEEEEecC--CHHHHHH--HHHHHHHHHHHhc
Confidence 788988874 79986532 24346899999974 4788988 7788888776554
No 364
>PRK07683 aminotransferase A; Validated
Probab=99.63 E-value=7.2e-14 Score=161.74 Aligned_cols=299 Identities=15% Similarity=0.130 Sum_probs=182.2
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Ccc-ceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSF-SLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~-~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+++.+++.+..|. +.. .+.. +++++|...+ ++.+. .++++|+++.+.+..+...++..|++
T Consensus 65 ~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~---~~~l~-----~~gd~Vl~~~p~y~~~~~~~~~~g~~ 136 (387)
T PRK07683 65 AGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIA---FRTIL-----EPGTEVILPAPIYPGYEPIIRLCGAK 136 (387)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHH---HHHhC-----CCCCEEEEcCCCccchHHHHHHcCCE
Confidence 56555555555555554454 333 4444 4445555333 33221 36789999988777777778889999
Q ss_pred EEEEcCCCC-CCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC-CC
Q 001989 704 IVSVGTDAK-GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG-LT 777 (985)
Q Consensus 704 vv~v~~d~~-g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~-l~ 777 (985)
++.++.+.+ ..+|++++++.++ +++++|++.+|+ ++|.+. .++++|+++|+++|+++++|+++.... .. ..
T Consensus 137 ~~~~~~~~~~~~~~~~~l~~~~~---~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~ 213 (387)
T PRK07683 137 PVFIDTRSTGFRLTAEALENAIT---EKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHT 213 (387)
T ss_pred EEEeecCcccCCCCHHHHHHhcC---cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcC
Confidence 999998654 5679999999987 678999999984 799974 258999999999999999999974211 11 00
Q ss_pred C----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 778 S----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 778 ~----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
. ++..+-.+++.|+.|.|+.| |.++|++++++++.+.+.... .....+.+...+
T Consensus 214 ~~~~~~~~~~~vi~~~s~SK~~~~p----GlRiG~i~~~~~l~~~~~~~~--------------~~~~~~~~~~~q---- 271 (387)
T PRK07683 214 SIAHFPEMREKTIVINGLSKSHSMT----GWRIGFLFAPSYLAKHILKVH--------------QYNVTCASSISQ---- 271 (387)
T ss_pred ChhhccCCcCCeEEEeeccccccCc----cceeEEEEcCHHHHHHHHHHH--------------HhccCCCChHHH----
Confidence 0 01112347788888988654 678999999876654432110 000111111111
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHH-HHHCC
Q 001989 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR-LMDYG 931 (985)
Q Consensus 854 ~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~-L~~~G 931 (985)
.++...|. -+..-+++..++..++++++.+.|++ ++.+ ..+.+.++ +.+.++. .+.+..++++. |.++|
T Consensus 272 ~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~--~~~~~~~----~~~~~~~~~~~ll~~~g 342 (387)
T PRK07683 272 YAALEALT-AGKDDAKMMRHQYKKRRDYVYNRLISMGLDV--EKPTGAFY--LFPSIGH----FTMSSFDFALDLVEEAG 342 (387)
T ss_pred HHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHHHcCCcc--cCCCeeEE--EEEeccc----CCCCHHHHHHHHHHhCC
Confidence 11122222 23333444455566777888888876 3332 12222222 2334431 13456677766 46689
Q ss_pred CccCCC-CC-C-CCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 932 FHGPTM-SW-P-VPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 932 i~~~~~-~~-p-~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
|.+... .| + .++++||++.. +++++.. .++.|.+++.
T Consensus 343 I~v~pg~~f~~~~~~~~Ri~~~~--~~~~~~~--al~~l~~~l~ 382 (387)
T PRK07683 343 LAVVPGSAFSEYGEGYVRLSYAY--SIETLKE--GLDRLEAFLQ 382 (387)
T ss_pred EEEcCchhhCCCCCCeEEEEecC--CHHHHHH--HHHHHHHHHH
Confidence 987432 22 2 25899999974 6788888 6677777664
No 365
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=99.63 E-value=1.2e-13 Score=159.28 Aligned_cols=213 Identities=20% Similarity=0.209 Sum_probs=151.9
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---h
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---K 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~ 289 (985)
..++++.+|++.|.+. ...+.+|++++.+++.++ . ++||+||++...|++....+...++..|++++.++. +
T Consensus 63 ~~~Le~~lA~~~g~~~--~i~~~sG~~Ai~~~l~al-l--~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~~d~e 137 (388)
T PRK07811 63 RTALEEQLAALEGGAY--GRAFSSGMAATDCLLRAV-L--RPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDLSDLD 137 (388)
T ss_pred HHHHHHHHHHHhCCCc--eEEeCCHHHHHHHHHHHH-h--CCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCCCCHH
Confidence 4467899999999886 455677888877777665 3 389999999999998887776666678999998865 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|..+|+|++++|. |.|++|-
T Consensus 138 ~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD-~a~a~~~~~~p~~~gaDivv~S~sK~l~g~~--- 213 (388)
T PRK07811 138 AVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVD-NTFASPYLQQPLALGADVVVHSTTKYIGGHS--- 213 (388)
T ss_pred HHHHhcCcCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEE-CCCCccccCCchhhCCcEEEecCceeecCCC---
Confidence 5666 7889999999998 68999999999999999999999995 45566655567788999999998 7775331
Q ss_pred CCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHH
Q 001989 367 GPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 367 GP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~ 445 (985)
+--+|++++++ ++.+++.. .+...|. + .+++ .+ |+...+.+-+..
T Consensus 214 ~~~gG~vv~~~~~l~~~~~~-------------------------~~~~~g~---~-~s~~---~a--~l~~~~L~tl~~ 259 (388)
T PRK07811 214 DVVGGALVTNDEELDEAFAF-------------------------LQNGAGA---V-PGPF---DA--YLTLRGLKTLAV 259 (388)
T ss_pred CcEEEEEEECCHHHHHHHHH-------------------------HHHhcCC---C-CCHH---HH--HHHHhccCcHHH
Confidence 11147777754 44333310 0000010 0 0111 11 223444455677
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeE
Q 001989 446 IAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
+.++..+++..+++.|++..+++
T Consensus 260 R~~~~~~na~~la~~L~~~p~v~ 282 (388)
T PRK07811 260 RMDRHSENAEAVAEFLAGHPEVS 282 (388)
T ss_pred HHHHHHHHHHHHHHHHHhCCCee
Confidence 77778889999999999885465
No 366
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=99.63 E-value=9.4e-14 Score=159.91 Aligned_cols=212 Identities=22% Similarity=0.201 Sum_probs=151.5
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--hh
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--KD 290 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--~~ 290 (985)
..++++.+|+++|.+. +.++.+|++++.+++.++ + ++||+||++...|+++...++.+ +..|+++++++. ++
T Consensus 55 ~~~lE~~lA~l~g~~~--~l~~~sG~~Ai~~~l~~l-l--~~GD~Vlv~~~~y~~~~~~~~~~-~~~g~~v~~~~~d~~~ 128 (385)
T PRK08574 55 LRPLEEALAKLEGGVD--ALAFNSGMAAISTLFFSL-L--KAGDRVVLPMEAYGTTLRLLKSL-EKFGVKVVLAYPSTED 128 (385)
T ss_pred HHHHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHH-h--CCCCEEEEcCCCchhHHHHHHHh-hccCcEEEEECCCHHH
Confidence 3457899999999864 667888998877776654 2 38999999999999999888764 567998887654 56
Q ss_pred hhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 291 IDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 291 l~~-l~~-~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
+++ +++ +|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.++...+.++|+|++++|. |+|++| |
T Consensus 129 l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD-~t~a~~~~~~~l~~GaDivv~S~sK~l~g~---~ 204 (385)
T PRK08574 129 IIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVD-NTFATPLLYRPLRHGADFVVHSLTKYIAGH---N 204 (385)
T ss_pred HHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEE-CCCCccccCChhhhCCcEEEeeCceeecCC---C
Confidence 777 777 8999999887 78999999999999999999999995 45666666667789999999998 777643 2
Q ss_pred CCcEEEEEE-chhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHH
Q 001989 367 GPHAAFLAT-SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 367 GP~~G~l~~-~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~ 445 (985)
..-.|.+.+ ++++.+++- ..|+..|+. .+++ .| |+...+-+-+..
T Consensus 205 d~~gG~vi~~~~~~~~~~~-------------------------~~~~~~g~~----~~p~---~a--~l~l~~l~tL~~ 250 (385)
T PRK08574 205 DVVGGVAVAWSGEFLEELW-------------------------EWRRRLGTI----MQPF---EA--YLVLRGLKTLEV 250 (385)
T ss_pred CceeEEEEECcHHHHHHHH-------------------------HHHHhcCCC----CCHH---HH--HHHHcccCcHHH
Confidence 122354444 455444330 001111110 0122 12 234445556777
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeE
Q 001989 446 IAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
+.++..+++.++.+.|++...++
T Consensus 251 R~~~~~~na~~la~~L~~~p~v~ 273 (385)
T PRK08574 251 RFERQCRNAMAIAEFLSEHPKVA 273 (385)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcC
Confidence 77888899999999999875454
No 367
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=99.63 E-value=1.5e-14 Score=158.56 Aligned_cols=293 Identities=18% Similarity=0.160 Sum_probs=189.3
Q ss_pred HHHHHHHHHhccccCcccccccccccccCCCccc----ccccccc-ccccccCCCCchhhhhhHHHHHHHHHHHHHHHhC
Q 001989 572 ELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATT----EMMPVTW-PSFANIHPFAPADQAQGYQEMFNNLGEWLCTITG 646 (985)
Q Consensus 572 e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~----~~~~~~~-~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G 646 (985)
.++-++.+++.+... ..+||-|-+..++.. ++.-+.+ +....|++ .-|..++...+.+++++++|
T Consensus 18 ~vw~e~~~la~e~~~----~~~LgqGfp~~~~P~fv~ea~~~~~~~~~~~qYt~------~~G~p~L~~aL~k~~se~~~ 87 (420)
T KOG0257|consen 18 YVWTEINRLAAEHKV----PNPLGQGFPDFPPPKFVTEAAKNAAKEPSTNQYTR------GYGLPQLRKALAKAYSEFYG 87 (420)
T ss_pred cHHHHHHHHHHhcCC----CCcccCCCCCCCCcHHHHHHHHHHhccchhccccc------cCCchHHHHHHHHHHHHHhc
Confidence 566777777776632 233887766655532 1221222 23333443 24666778888899999887
Q ss_pred CCc---cceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC--------CCCC
Q 001989 647 FDS---FSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD--------AKGN 714 (985)
Q Consensus 647 ~~~---~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d--------~~g~ 714 (985)
... ..+.+++|+. +..++++++. ++||+||+.++++..+-....+.|...+.|+.. .++.
T Consensus 88 ~~~~~~~eVlVT~GA~~ai~~~~~~l~--------~~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~ 159 (420)
T KOG0257|consen 88 GLLDPDDEVLVTAGANEAISSALLGLL--------NPGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWT 159 (420)
T ss_pred cccCCcccEEEecCchHHHHHHHHHHc--------CCCCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCcccc
Confidence 543 3466666653 5544444432 588999999987777767788999999999876 2478
Q ss_pred CCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccc---------ccccCCCCCCcc
Q 001989 715 INIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANM---------NAQVGLTSPGYI 782 (985)
Q Consensus 715 iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~---------~~~~~l~~pg~~ 782 (985)
+|.++|+.+++ ++|++|++++| |++|.+- +.+++|+++|+++|.+++.|.++- .... ..||.+
T Consensus 160 ~D~~~le~~~t---~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~a--slPgm~ 234 (420)
T KOG0257|consen 160 LDPEELESKIT---EKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIA--SLPGMY 234 (420)
T ss_pred CChHHHHhhcc---CCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeee--cCCchh
Confidence 99999999999 89999999999 5799884 369999999999999999998861 1111 237888
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH-HHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT-YIA 861 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a-~l~ 861 (985)
..-+-++|+.|+|++ .||.+|+++.++++...+..-. . .....+++ +. +.+ .++|.+ .+.
T Consensus 235 ertitvgS~gKtf~~----TGWrlGW~igp~~L~~~~~~vh--~----------~~~~~~~T-p~-q~A-~a~a~~~~~~ 295 (420)
T KOG0257|consen 235 ERTITVGSFGKTFGV----TGWRLGWAIGPKHLYSALFPVH--Q----------NFVFTCPT-PI-QEA-SAAAFALELA 295 (420)
T ss_pred heEEEeccccceeee----eeeeeeeeechHHhhhhHHHHh--h----------ccccccCc-HH-HHH-HHHHHhhhhh
Confidence 888999999999964 6899999999777765432110 0 00112222 11 211 111111 111
Q ss_pred HhcHHH--H-HHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEec
Q 001989 862 MMGSKG--L-TEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLR 910 (985)
Q Consensus 862 ~lg~eG--l-~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~ 910 (985)
....+| + .++.+...++++.|.+.|.+ |+++. ++.+..+ +.++++
T Consensus 296 ~~~p~~~y~~~~~~~~y~~krdil~k~L~~lg~~v~--~p~gayy--l~adfs 344 (420)
T KOG0257|consen 296 CLQPGGSYFITELVKEYKEKRDILAKALEELGLKVT--GPEGAYY--LWADFS 344 (420)
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCccc--cCCCceE--EEEecc
Confidence 111222 2 22555678889999999988 66653 3334444 355655
No 368
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=99.63 E-value=4.3e-14 Score=160.70 Aligned_cols=294 Identities=15% Similarity=0.080 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHHhcCCCCcc--eeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHH-HhhcCCCe-EEEE
Q 001989 210 LESLLNFQTMIADLTGLPMSN--ASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICI-TRADGFDI-KVVV 285 (985)
Q Consensus 210 l~~i~e~q~~ia~L~g~~~~~--~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~-~~a~~~gi-~v~~ 285 (985)
.+.+.+.++.+.++++.+..+ +.+..+||+++||+++.+- . ++|++|++.. .|. .-|. ..++..|+ ++..
T Consensus 38 ~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~-~-~~g~~vLv~g-~FG---~r~~~eia~~~g~~~v~~ 111 (374)
T TIGR01365 38 KEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSML-G-CRGVDVLAWE-SFG---KGWVTDVTKQLKLPDVRV 111 (374)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcC-C-CCCCeEEEEC-HHH---HHHHHHHHHhcCCCCcEE
Confidence 577888889999999985432 5567899999999998652 1 2678888864 443 3322 33555677 3555
Q ss_pred eCch-----hhhccCCCEeEEEEEc-CCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-cc
Q 001989 286 SDLK-----DIDYKSGDVCGVLVQY-PGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QR 358 (985)
Q Consensus 286 v~~~-----~l~~l~~~t~~V~v~~-pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~ 358 (985)
++.+ +++++..+ +.|++++ -+++|+..|+++|++.. ++++++||+ ..++|...-.-+ ++|+++.++ |.
T Consensus 112 l~~~~g~~~~~~~ve~~-~~v~~vhnETSTGv~npv~~i~~~~--~~~lliVDa-vSs~g~~~l~~d-~iDv~~tgsQK~ 186 (374)
T TIGR01365 112 LEAEYGKLPDLKKVDFK-NDVVFTWNGTTSGVRVPNGDFIPAD--REGLTICDA-TSAAFAQDLDYH-KLDVVTFSWQKV 186 (374)
T ss_pred EcCCCCCCCCHHHcCCC-CCEEEecCCCchheecccccccccc--CCCcEEEEc-cchhcCCCCChh-HCcEEEEechhc
Confidence 5331 12223222 2255555 58899999998777433 488999964 456665432222 599999999 77
Q ss_pred ccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccccc---ccccccccCCCccchhHHHHHHHHHHH
Q 001989 359 FGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTRE---QHIRRDKATSNICTAQALLANMAAMYA 435 (985)
Q Consensus 359 lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre---~~irre~atsni~t~~~l~a~~aa~~l 435 (985)
|++| ||++|+.++++.+++...+--- .| -+. .+.+.... .+.+ ..-|.|......++++..++
T Consensus 187 L~~p-----pGls~v~vs~~Al~~~~~~~~y--~~---~~~-~~~~~~~~~~~~~~~-~~~t~~TP~v~~l~a~~~~l-- 252 (374)
T TIGR01365 187 LGGE-----GAHGMLILSPRAVARLESYTPA--WP---LPK-IFRLTKGGKLNKKIF-EGSTINTPSMLCVEDWLDAL-- 252 (374)
T ss_pred cCCC-----CceEEEEECHHHHHHHhhcCCC--CC---Chh-hhccccccchhhhhh-cCCCCCChHHHHHHHHHHHH--
Confidence 8766 7899999999988765311000 00 000 12211100 0111 12356655445555554444
Q ss_pred HHhCcc-hHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC---CCcce-EEEec--C-------C-----HHHHHHHHHHcC
Q 001989 436 VYHGPE-GLKTIAQRVHGLAGTFALGLKKLGTVEVQGL---PFFDT-VKVKC--A-------D-----AHAIASAAYKIE 496 (985)
Q Consensus 436 ~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~---~~~~~-~~~~~--~-------~-----~~~v~~~L~~~G 496 (985)
.++..+ |++++.+|+.+++++++++++++|.++++.. ...++ +++.. + + +.++.+.|.++|
T Consensus 253 ~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 332 (374)
T TIGR01365 253 KWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFAKELISTLEKEG 332 (374)
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHHHHHHHHHHHCC
Confidence 445554 8999999999999999999999974666642 12332 22333 2 1 478899999999
Q ss_pred ceeee----ecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 497 MNLRV----VDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 497 I~~~~----~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
|.+.. ..+..+||.-.-..+.+||++|+++|.
T Consensus 333 i~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~ 368 (374)
T TIGR01365 333 VAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLD 368 (374)
T ss_pred EEEeccccccCCCceEEecCCcCCHHHHHHHHHHHH
Confidence 97642 124779999999999999999999885
No 369
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=99.62 E-value=1.2e-13 Score=160.50 Aligned_cols=294 Identities=20% Similarity=0.209 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCcEEE---EE
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGMKIV---SV 707 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~~vv---~v 707 (985)
....+++++++++.|.+. .++.+||++|+++++.+++.+....+. .+++|++ ...+||.........+.... ..
T Consensus 81 ~~~~~la~~l~~~~~~~~-v~~~~gg~eA~~~al~~a~~~~~~~~~-~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~ 158 (396)
T PRK02627 81 EPQEELAEKLVELSGMDK-VFFCNSGAEANEAAIKLARKYGHKKGI-EKPEIITAENSFHGRTLATLSATGQPKYQEGFE 158 (396)
T ss_pred HHHHHHHHHHHhhcCCCE-EEECCCcHHHHHHHHHHHHHHhcccCC-CCCeEEEECCCcCcccHHHHHhcCCccccccCC
Confidence 345678889999888754 466788999998888877765321111 2256766 55678876655444332211 11
Q ss_pred cCCCCC----CCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc---cCHHHHHHHHHHcCCEEEEEccccccccCCC--
Q 001989 708 GTDAKG----NINIEELRKAAEANRDNLSTLMVTYPS-THGVYE---EGIDEICKIIHDNGGQVYMDGANMNAQVGLT-- 777 (985)
Q Consensus 708 ~~d~~g----~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~---~di~eI~~la~~~galliVD~a~~~~~~~l~-- 777 (985)
+...+. ..|++++++++. +++++|+++.++ .+|... ..+++|.++|+++|+++++|+++. +++-..
T Consensus 159 ~~~~~~~~~~~~d~~~l~~~i~---~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~-g~g~~g~~ 234 (396)
T PRK02627 159 PLVEGFIYVPFNDIEALKAAIT---DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQT-GMGRTGKL 234 (396)
T ss_pred CCCCCceEeCCCCHHHHHHhcC---CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhc-CCCccCce
Confidence 111111 238999999996 789999998763 566432 248999999999999999999874 221100
Q ss_pred -CCCcc--CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHH
Q 001989 778 -SPGYI--GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 778 -~pg~~--g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
..... .+|++++ .|.++ +|..+|++++++++.+.+.... ...+ +.+++..+.
T Consensus 235 ~~~~~~~~~pdi~t~--sK~~~-----~G~rig~~~~~~~~~~~~~~~~--------------~~~t----~~~~~~~~~ 289 (396)
T PRK02627 235 FAYQHYGIEPDIMTL--AKGLG-----GGVPIGAVLAKEKVADVFTPGD--------------HGST----FGGNPLACA 289 (396)
T ss_pred eeehhcCCCCCEEEE--cchhh-----CCcccEEEEEcHHHHhccCCCC--------------CCCC----CCCCHHHHH
Confidence 01112 3577654 47774 4567899998887765542110 0011 112334445
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001989 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 855 ~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~G 931 (985)
++.+.|..+..+++ .++..++.++++++|.+. ++..........+ +.+.+. .+..+++++|.++|
T Consensus 290 aa~~~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~--~~i~~~-------~~~~~~~~~l~~~G 357 (396)
T PRK02627 290 AALAVIEIIEEEGL---LENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLM--IGIELD-------RPAAEIVKKALEKG 357 (396)
T ss_pred HHHHHHHHHhhccH---HHHHHHHHHHHHHHHHHHHHhCCCeeeeccCcEE--EEEEec-------CcHHHHHHHHHHCC
Confidence 55566665544333 345556667777776541 2211110001111 233332 25788999999999
Q ss_pred CccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 932 FHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 932 i~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+.+.... .+.+|++|+...+++||++ +++.|++++++
T Consensus 358 v~v~~~~---~~~lRi~~~~~~~~~~i~~--~~~~l~~~l~~ 394 (396)
T PRK02627 358 LLINVTG---DNVLRLLPPLIISKEEIDE--AVDRLEEVLKE 394 (396)
T ss_pred eEEeecC---CCEEEEECCcccCHHHHHH--HHHHHHHHHHh
Confidence 9875432 3689999998999999999 77888887764
No 370
>PRK06348 aspartate aminotransferase; Provisional
Probab=99.62 E-value=1.1e-13 Score=160.01 Aligned_cols=297 Identities=13% Similarity=0.128 Sum_probs=178.7
Q ss_pred hhHHHHHHHHHHHHHHHhCC--CccceecCcHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFSLQPNAGA-AGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~~~~~sGa-~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+.+.+++.+..|. +..++..++|+ +|.. .+++.+. .++++|+++++.|+.+...++..|.++
T Consensus 66 ~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~---~~~~~~~-----~~gd~vlv~~p~y~~~~~~~~~~g~~~ 137 (384)
T PRK06348 66 GGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMY---LALQSIL-----DPGDEVIIHEPYFTPYKDQIEMVGGKP 137 (384)
T ss_pred CCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHH---HHHHHhc-----CCCCEEEEeCCCCcchHHHHHHcCCEE
Confidence 56555555556666555454 34455554454 4443 3333321 467899999988877777888899999
Q ss_pred EEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC-CC
Q 001989 705 VSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG-LT 777 (985)
Q Consensus 705 v~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~-l~ 777 (985)
+.+|.++ ++.+|+++|+++++ +++++|++++| |++|.+. .++++|.++|+++|+++++|.++..-. .. ..
T Consensus 138 ~~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~ 214 (384)
T PRK06348 138 IILETYEEDGFQINVKKLEALIT---SKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFV 214 (384)
T ss_pred EEecCCcCcCCcCCHHHHHHhhC---cCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCcc
Confidence 9998742 35699999999987 67889999998 4799885 248899999999999999999874211 11 00
Q ss_pred C----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 778 S----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 778 ~----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
. .+..+-.+++.|+.|+|++| |.++|++++++++...+.... .....+.+..++.
T Consensus 215 ~~~~~~~~~~~vi~~~SfSK~~~l~----GlRiG~~v~~~~~~~~~~~~~--------------~~~~~~~~~~~q~--- 273 (384)
T PRK06348 215 PMATLAGMPERTITFGSFSKDFAMT----GWRIGYVIAPDYIIETAKIIN--------------EGICFSAPTISQR--- 273 (384)
T ss_pred chhhcCCCcCcEEEEecchhccCCc----cccceeeecCHHHHHHHHHHH--------------HhccCCCCHHHHH---
Confidence 1 01112346777888988654 678999999876654432100 0001111111121
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCCC
Q 001989 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYGF 932 (985)
Q Consensus 854 ~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~Gi 932 (985)
++..++.. ..+-+++..+...++.+++.+.|++...+.+..+.+.++ +.++++. .+.+..++++.|. ++||
T Consensus 274 -~~~~~l~~-~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~gg~~--~~~~~~~----~~~~~~~l~~~l~~~~gv 345 (384)
T PRK06348 274 -AAIYALKH-RDTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPPKGSIY--AFINIKK----TGLSSVEFCEKLLKEAHV 345 (384)
T ss_pred -HHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEE--EEEeccc----CCCCHHHHHHHHHHhCCE
Confidence 11222321 222234444455667788888887621222222223222 3445431 1456788998876 5699
Q ss_pred ccCC-CCCC--CCCEEEEeccCCCCHHHHHHHHccCChh
Q 001989 933 HGPT-MSWP--VPGTLMIEPTESESKSWTGIVMLSSPSE 968 (985)
Q Consensus 933 ~~~~-~~~p--~~~~lris~t~~~t~eeId~~~~~~~l~ 968 (985)
.+.. ..|. ..+++||+++ .+.++++. .++.|+
T Consensus 346 ~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~--al~~l~ 380 (384)
T PRK06348 346 LVIPGKAFGESGEGYIRLACT--VGIEVLEE--AFNRIE 380 (384)
T ss_pred EEcCchhhccCCCCeEEEEec--CCHHHHHH--HHHHHH
Confidence 8653 2232 2479999985 47788777 444443
No 371
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.62 E-value=4.3e-14 Score=163.48 Aligned_cols=295 Identities=18% Similarity=0.137 Sum_probs=189.6
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---- 288 (985)
+.++++.+|++.|.+. +..+.+|++|+.++++++ + ++||+||++...|..+...+....+..|+++++++.
T Consensus 63 v~~lE~~la~leg~~~--av~~~SG~aAi~~al~al-l--~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~ 137 (432)
T PRK06702 63 LAAFEQKLAELEGGVG--AVATASGQAAIMLAVLNI-C--SSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTA 137 (432)
T ss_pred HHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHh-c--CCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCH
Confidence 4457899999999876 677999999998888765 3 389999999999988888766555678999999875
Q ss_pred hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCC
Q 001989 289 KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 289 ~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
+++++ ++++|++|++.+| |+++.+.|+++|+++||++|+++++| +.++.+.+..|.++||||++.|. |.++++-
T Consensus 138 ~~l~~~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD-~T~~tP~~~~pl~~GADIvv~S~TKy~~Ghs-- 214 (432)
T PRK06702 138 DEIVALANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVD-NTLATPYLCQAFEHGANIIVHSTTKYIDGHA-- 214 (432)
T ss_pred HHHHHhCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEE-CCCCchhhCChhhcCCCEEEEccccccCCCc--
Confidence 46777 8999999999887 88999999999999999999999995 45566667778899999999998 8887642
Q ss_pred CCCcEEEEEEchhhHhcCC--CceeeeeecCCCCcceeeeccc---cc-------ccccccccCCCccchhHHHHHHHHH
Q 001989 366 GGPHAAFLATSQEYKRMMP--GRIVGVSIDSSGKPALRVAMQT---RE-------QHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 366 GGP~~G~l~~~~~~~~~lp--~~~vG~t~d~~g~~~~~l~l~t---re-------~~irre~atsni~t~~~l~a~~aa~ 433 (985)
+--.|.+..+..+-..-. ..++- .| ... +.+.+.. |. ...+|.-| .| .+++ ..
T Consensus 215 -d~l~G~v~~~~~~~w~~~~~~~l~~--~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~-~sp~-----~a 279 (432)
T PRK06702 215 -SSLGGIVIDGGNFDWTNGKYPELVE--PD--PSY-HGVSYVQNFGAAAYIVKARVQLLRDYG---NC-MSPF-----NA 279 (432)
T ss_pred -ceeceEEEeCCCccccccccccccc--cc--ccc-cccchhhccchhhHHHHHHHHHHHHcc---CC-CCHH-----HH
Confidence 112233332222110000 00000 00 000 0000000 00 01111112 11 1222 12
Q ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc-CC-----C------------CcceEEEecCC----HHHHHHH
Q 001989 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ-GL-----P------------FFDTVKVKCAD----AHAIASA 491 (985)
Q Consensus 434 ~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~-~~-----~------------~~~~~~~~~~~----~~~v~~~ 491 (985)
|+...|-+-++.+.++..+++..+++.|++.+.++.+ .+ + +...|+|.+++ +.++.+.
T Consensus 280 ~l~~rgL~Tl~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~ 359 (432)
T PRK06702 280 YISNIGLETLHLRMERHSENALAVAKWLADHERIEWVNYPGLDSNENYSLAQKYLKKGASGVLTFGIKGGLEAAKEFIAN 359 (432)
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHh
Confidence 3466677778888889999999999999988545532 11 1 11246777653 3344444
Q ss_pred HHHc--Ccee---ee----------------------ecCCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001989 492 AYKI--EMNL---RV----------------------VDSNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 492 L~~~--GI~~---~~----------------------~~~~~lris~t~~~t~edId~li~aL~~~ 530 (985)
|.=- +..+ +. +.++.||+|++.-+.++=|+.|.++|...
T Consensus 360 l~l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGlEd~eDLi~Dl~~Al~~~ 425 (432)
T PRK06702 360 VKLATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLIRLSVGIEDVSDIIADLEAALVGG 425 (432)
T ss_pred CccceeccccCCCCcceECCCCCCcccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhcC
Confidence 4311 1111 00 11367999999876666667777788755
No 372
>PRK09148 aminotransferase; Validated
Probab=99.62 E-value=9.4e-14 Score=161.70 Aligned_cols=304 Identities=13% Similarity=0.078 Sum_probs=182.5
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--cc-ceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--SF-SLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~~-~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+.+.+++.+.+|.+ .. .+..++|++ |.... ++.+. .++|+|+++++.+..+...+...|++
T Consensus 68 ~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~---~~~l~-----~~gd~Vl~~~P~y~~~~~~~~~~g~~ 139 (405)
T PRK09148 68 KGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANM---AQAIT-----APGDVILCPNPSYPIHAFGFIMAGGV 139 (405)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHH---HHHhc-----CCCCEEEEcCCCCcccHHHHHhcCCE
Confidence 576666666667776666753 33 455555544 44332 33321 46889999998887777777889999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cC--CC
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VG--LT 777 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~--l~ 777 (985)
++.+|.+.++. ++++++++++.+.+++++|++++| |++|.+.+ .+++|.++|+++|+++++|+++..-. .. ..
T Consensus 140 v~~v~~~~~~~-~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~ 218 (405)
T PRK09148 140 IRSVPAEPDEE-FFPALERAVRHSIPKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPP 218 (405)
T ss_pred EEEEeCCCCCC-CccCHHHHHhhccccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCC
Confidence 99999865432 355566666544468899999998 57999872 25788999999999999999874211 01 11
Q ss_pred CCCc----cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 778 SPGY----IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 778 ~pg~----~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
.... .+..+++.|++|.|+.| |.++|++++++++...+... . ...+.+.+...+
T Consensus 219 s~~~~~~~~~~~i~~~SfSK~~~~p----GlR~G~~v~~~~~i~~l~~~-~-------------~~~~~~~~~~~q---- 276 (405)
T PRK09148 219 SVLQVPGAKDVTVEFTSMSKTFSMA----GWRMGFAVGNERLIAALTRV-K-------------SYLDYGAFTPIQ---- 276 (405)
T ss_pred ChhhCCCccCcEEEEeccccccCCc----chheeeeeCCHHHHHHHHHH-H-------------HHhccCCChHHH----
Confidence 1111 12235678999998655 67899999887765444210 0 000111110111
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCC
Q 001989 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYG 931 (985)
Q Consensus 854 ~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~G 931 (985)
.++...+. -..+-+++..+...++.+++.+.|++ ++.+ ..+.+..+ +.++++... .+.+..++++.|. ++|
T Consensus 277 ~~~~~~L~-~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~--~~p~~g~f--~~~~l~~~~--~~~~~~~~~~~ll~~~g 349 (405)
T PRK09148 277 VAATAALN-GPQDCIAEMRELYKKRRDVLVESFGRAGWDI--PPPAASMF--AWAPIPEAF--RHLGSLEFSKLLVEKAD 349 (405)
T ss_pred HHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--CCCCeeEE--EEEECCCcc--CCCCHHHHHHHHHHhCC
Confidence 11122222 12333445555667788888888876 4332 22223222 345554100 0124578888776 679
Q ss_pred CccCC-CCCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 932 FHGPT-MSWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 932 i~~~~-~~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
|.+.. ..|+ .++++||++. .+.++++. .++.|.+++++
T Consensus 350 V~v~pg~~f~~~~~~~~Ri~~~--~~~~~l~~--al~~l~~~l~~ 390 (405)
T PRK09148 350 VAVAPGVGFGEHGDGYVRIALV--ENEQRIRQ--AARNIKRFLSS 390 (405)
T ss_pred EEEeCchhhCCCCCCeEEEEec--CCHHHHHH--HHHHHHHHHHH
Confidence 98653 2233 2478999986 46788777 56666666654
No 373
>PLN02242 methionine gamma-lyase
Probab=99.62 E-value=8.1e-14 Score=161.83 Aligned_cols=218 Identities=18% Similarity=0.151 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHh-hcCCCeEEEEeCc--
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITR-ADGFDIKVVVSDL-- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~-a~~~gi~v~~v~~-- 288 (985)
...++++.+|+++|.+. +.++.+|++++.++++++ . ++||+||++...|+.+...+... .+..|+++++++.
T Consensus 77 t~~~LE~~lA~l~g~~~--~l~~~sG~~Ai~~al~al-~--~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d~~d 151 (418)
T PLN02242 77 TVLNLGRQMAALEGTEA--AYCTASGMSAISSVLLQL-C--SSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVDITD 151 (418)
T ss_pred hHHHHHHHHHHHhCCCe--EEEEccHHHHHHHHHHHH-h--CCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcCCCC
Confidence 34567899999999987 567899998888777665 2 38999999999998887766432 2347899888765
Q ss_pred -hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccC
Q 001989 289 -KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPM 363 (985)
Q Consensus 289 -~~l~~-l~~-~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~ 363 (985)
+++++ +++ +|++|++.+| |++|.+.|+++|+++||++|++++|| +.++. +...+.++|+||+++|. |.|+++
T Consensus 152 ~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livD-ea~~~-~~~~~~~~g~divv~S~SK~l~g~- 228 (418)
T PLN02242 152 LEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVD-NTFAP-MVLSPARLGADVVVHSISKFISGG- 228 (418)
T ss_pred HHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEE-CCCCc-cCCCHHHcCCcEEEEeCccccCCC-
Confidence 45656 777 4999999998 78999999999999999999999995 34442 23456778999999998 877642
Q ss_pred CCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchH
Q 001989 364 GYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGL 443 (985)
Q Consensus 364 ~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl 443 (985)
|..-+|++++++++++.+.... . . + ....|. .+....|++ ...+..-+
T Consensus 229 --g~~~gG~iv~~~~li~~l~~~~----------~-----------~-~----~~~~g~--~~~~~~A~l--~~~~l~tl 276 (418)
T PLN02242 229 --ADIIAGAVCGPAELVNSMMDLH----------H-----------G-A----LMLLGP--TMNPKVAFE--LSERLPHL 276 (418)
T ss_pred --CCceEEEEEcCHHHHHHHHHHh----------h-----------h-h----hhccCC--CCCHHHHHH--HHcCCCcH
Confidence 3233588888887765541000 0 0 0 000110 111112222 34455566
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEc
Q 001989 444 KTIAQRVHGLAGTFALGLKKLGTVEVQ 470 (985)
Q Consensus 444 ~~i~~~~~~~a~~l~~~L~~~g~~~~~ 470 (985)
..+.++..+++.++++.|++++ +++.
T Consensus 277 ~~r~~~~~~~a~~la~~L~~~~-~~V~ 302 (418)
T PLN02242 277 SLRMKEHCRRAMEYAKRMKELG-LKVI 302 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CEEE
Confidence 7777888999999999999997 7775
No 374
>PRK07503 methionine gamma-lyase; Provisional
Probab=99.62 E-value=1.3e-13 Score=159.75 Aligned_cols=215 Identities=23% Similarity=0.230 Sum_probs=151.6
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--- 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~--- 289 (985)
..++++.+|++.|.+. +.++.+|++++..++.++ + ++||+||++...|+.....+...++..|++++.+|.+
T Consensus 67 ~~~le~~lA~l~g~~~--~i~~~sG~~Al~~~l~~l-l--~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~ 141 (403)
T PRK07503 67 LALLEQRMASLEGGEA--AVALASGMGAITATLWTL-L--RPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLTDPA 141 (403)
T ss_pred HHHHHHHHHHHhCCCc--EEEEcCHHHHHHHHHHHH-c--CCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCCCHH
Confidence 3457789999999875 567788888777666554 3 3899999999999877766655566789999998764
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|..+|+|++++|. |.+++| |
T Consensus 142 ~l~~~i~~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD-~a~a~~~~~~~l~~g~Di~v~S~tK~l~g~---g 217 (403)
T PRK07503 142 ALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVD-NTYCTPYLQRPLELGADLVVHSATKYLGGH---G 217 (403)
T ss_pred HHHHhcCccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEE-CCCcccccCCchhhCCCEEEccccccccCC---C
Confidence 5656 7889999999888 78999999999999999999999994 45555555556678999999998 777532 2
Q ss_pred CCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 367 GPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 367 GP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
+..+|++..++++.+++.. .+ . +. ....|. +++ .|+ +...+.+-+..+
T Consensus 218 d~~gG~v~~~~~l~~~l~~--~~-------~---------------~~--~~g~~~-s~~---~a~--l~l~~L~tl~~r 265 (403)
T PRK07503 218 DITAGLVVGGKALADRIRL--EG-------L---------------KD--MTGAVM-SPF---DAF--LLMRGLKTLALR 265 (403)
T ss_pred ceeEEEEEcCHHHHHHHHh--hh-------H---------------Hh--CcCCCC-CHH---HHH--HHHcCcchHHHH
Confidence 2336888877776655410 00 0 00 001111 122 222 233344455666
Q ss_pred HHHHHHHHHHHHHHHhcCCCeE
Q 001989 447 AQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
.++..+++..+.+.|++...++
T Consensus 266 ~~~~~~na~~~a~~L~~~p~v~ 287 (403)
T PRK07503 266 MDRHCASAQAVAEWLARHPAVE 287 (403)
T ss_pred HHHHHHHHHHHHHHHHhCCCcc
Confidence 6777899999999999875354
No 375
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=99.62 E-value=1.4e-13 Score=160.73 Aligned_cols=325 Identities=16% Similarity=0.159 Sum_probs=191.7
Q ss_pred ccccccccCCCccccccccccccccc-cCCCCchhhhhhHHHHHHHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVI 668 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~-~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~ai 668 (985)
..||++++.+..+...+......+.. .++. +...++.+.|++++... ...++.+||++|++++++.+
T Consensus 45 ~~lGh~~p~v~~a~~~ql~~~~~~~~~~~~~----------~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklA 114 (420)
T TIGR00700 45 LNIGHSHPRVVDAVRTQVAEFTHTCFMVTPY----------EGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIA 114 (420)
T ss_pred ccCCCCCHHHHHHHHHHHHhccCccccccCC----------hHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHH
Confidence 45788877776655444322111111 1111 12346777788877422 23577799999999999999
Q ss_pred HHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC--------c-----EEEEEcCCCCCC-----------CCHHHHHHH
Q 001989 669 RAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG--------M-----KIVSVGTDAKGN-----------INIEELRKA 723 (985)
Q Consensus 669 r~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G--------~-----~vv~v~~d~~g~-----------iD~e~L~~~ 723 (985)
|.| +++.+||. ..++||....+....| + .+..+|.....+ -+++.+++.
T Consensus 115 r~~------tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (420)
T TIGR00700 115 RSY------TGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAI 188 (420)
T ss_pred HHh------cCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHH
Confidence 876 23455664 7789998766543221 1 223344311000 125677777
Q ss_pred HH--hcCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCC--------ccCCcEEEe
Q 001989 724 AE--ANRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG--------YIGADVCHL 789 (985)
Q Consensus 724 i~--~~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg--------~~g~Di~~~ 789 (985)
+. ...+++++|+++-. ...|++.+ .+++|.++|+++|+++|+|+++. ++.+.+ ..-+|++++
T Consensus 189 ~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~t----g~gr~g~~~a~~~~~~~pDi~~l 264 (420)
T TIGR00700 189 FVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQT----GFARTGAMFACEHEGPEPDLITT 264 (420)
T ss_pred HHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEeccc----CCcccchhHHHhhcCCCCCEEEe
Confidence 63 23467888888643 34566541 28999999999999999999873 222222 123788764
Q ss_pred CCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHH
Q 001989 790 NLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 790 s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~ 869 (985)
.|.++ +|..+|++++++++.+.+.... ..+++.|+++.++++.+.|..+..+++.
T Consensus 265 --sK~l~-----~G~pig~v~~~~~i~~~~~~~~------------------~~~T~~~~pl~~aaa~a~l~~l~~~~~~ 319 (420)
T TIGR00700 265 --AKSLA-----DGLPLSGVTGRAEIMDAPAPGG------------------LGGTYAGNPLACAAALAVLAIIESEGLI 319 (420)
T ss_pred --ecccc-----CCcceEEEEecHHHHhhcCCCC------------------cCCCCCcCHHHHHHHHHHHHHHHhccHH
Confidence 47774 4567889998887765543211 0112334566667777778777666554
Q ss_pred HHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCc--cccCCCCHHHHHHHHHHCCCccCCC-CCCC
Q 001989 870 EASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGL--KNTAGIEPEDVAKRLMDYGFHGPTM-SWPV 941 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~--~~~~g~~~~~v~~~L~~~Gi~~~~~-~~p~ 941 (985)
+ +..+..++++++|++. ++.+ +.+. +.. +.+.+..- ..+.......+.+.+.++|+.+.+. .+
T Consensus 320 ~---~~~~~g~~l~~~L~~l~~~~~~~~~vrg~-G~~---~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f-- 390 (420)
T TIGR00700 320 E---RARQIGRLVTDRLTTLKAVDPRIGDVRGL-GAM---IAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMF-- 390 (420)
T ss_pred H---HHHHHHHHHHHHHHHHHhhCCCEEEeecc-ceE---EEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCCC--
Confidence 4 4445556677666541 2211 1122 222 22332100 0000011345667777899987542 22
Q ss_pred CCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 942 PGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 942 ~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.+.+|++|+...++++|++ .+++|.+.+.
T Consensus 391 ~~~lRl~p~l~~~~~~l~~--~~~~l~~~l~ 419 (420)
T TIGR00700 391 GNIIRFLPPLTIGDELLSE--GLDILCAILA 419 (420)
T ss_pred CCEEEEECCCCcCHHHHHH--HHHHHHHHhh
Confidence 3799999998899999999 7788877653
No 376
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=99.62 E-value=9.6e-14 Score=149.53 Aligned_cols=233 Identities=22% Similarity=0.236 Sum_probs=150.7
Q ss_pred HHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---hhh
Q 001989 216 FQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK---DID 292 (985)
Q Consensus 216 ~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~---~l~ 292 (985)
+++.||.|-|.-. +.-+.+|.++.-.+++.+. +.||+||.+...+......+....+.+|++++++|.+ +++
T Consensus 67 lE~RiAaLEGG~a--a~a~aSG~AA~~~ai~~la---~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~d~~~~~ 141 (426)
T COG2873 67 LEERIAALEGGVA--ALAVASGQAAITYAILNLA---GAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPDDPENFE 141 (426)
T ss_pred HHHHHHHhhcchh--hhhhccchHHHHHHHHHhc---cCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCCCCHHHHH
Confidence 5579999998543 2233455555444443321 3899999999999888888876678899999999765 455
Q ss_pred c-cCCCEeEEEEEc-CCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCCCc
Q 001989 293 Y-KSGDVCGVLVQY-PGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGGPH 369 (985)
Q Consensus 293 ~-l~~~t~~V~v~~-pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~ 369 (985)
+ ++++|++|++.. .|+-+.+.|+++|+++||++|++++|+ +.++-+.+..|-+.|||||+.|. |++|+. |. .
T Consensus 142 ~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVD-NT~atpyl~rP~~hGADIVvHS~TK~igGh-Gt---~ 216 (426)
T COG2873 142 AAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVD-NTFATPYLCRPIEHGADIVVHSATKYIGGH-GT---A 216 (426)
T ss_pred HHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEe-cCCCcceecchhhcCCCEEEEeecccccCC-cc---c
Confidence 6 899999999975 699999999999999999999999994 56777788899999999999998 887652 21 2
Q ss_pred E-EEEEEchhhHhcCCCceeeeeecCCCCcceeee---------cccccccccccccCCCccchhHHHHHHHHHHHHHhC
Q 001989 370 A-AFLATSQEYKRMMPGRIVGVSIDSSGKPALRVA---------MQTREQHIRRDKATSNICTAQALLANMAAMYAVYHG 439 (985)
Q Consensus 370 ~-G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~---------l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g 439 (985)
+ |.+.-.-.+-...++|+-..+...++-.+..++ +..|-+-. |.-|. +.++. ..|+...|
T Consensus 217 iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~l-RDlGa----~lsPf-----nAfl~lqG 286 (426)
T COG2873 217 IGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLL-RDLGA----TLSPF-----NAFLLLQG 286 (426)
T ss_pred cceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHH-Hhccc----ccCcH-----HHHHHHhc
Confidence 2 343333222212244443332211111111110 00011111 11110 00111 11345556
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 001989 440 PEGLKTIAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 440 ~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
-|-|.-+.+|+.++|..+++.|++...+.
T Consensus 287 lETL~LRmerH~~NA~~vA~~L~~HpkV~ 315 (426)
T COG2873 287 LETLSLRMERHCENALKVAEFLENHPKVA 315 (426)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHhcCCCee
Confidence 66666677888999999999999874343
No 377
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=99.62 E-value=4.9e-14 Score=162.29 Aligned_cols=208 Identities=20% Similarity=0.162 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH---HHCCcEEEEEcCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA---AMCGMKIVSVGTD 710 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a---~~~G~~vv~v~~d 710 (985)
..++++.+++++|.+.+ +.++||+.|+.+++.++. .++|+||++...|+.+.... ...|++++.++.
T Consensus 55 ~~~lE~~lA~l~g~~~~-l~~~sG~~Ai~~~l~~ll--------~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~~- 124 (385)
T PRK08574 55 LRPLEEALAKLEGGVDA-LAFNSGMAAISTLFFSLL--------KAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAYP- 124 (385)
T ss_pred HHHHHHHHHHHhCCCcE-EEeCCHHHHHHHHHHHHh--------CCCCEEEEcCCCchhHHHHHHHhhccCcEEEEECC-
Confidence 45789999999998754 556778877755554332 47899999988787665443 446888877653
Q ss_pred CCCCCCHHHHHHHHHhcCC-CEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 711 AKGNINIEELRKAAEANRD-NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~~~-~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
|+++++++++ + +|++|++++| |++|.+. |+++|+++||++|+++++|+++..+ ....|..+|+|+++
T Consensus 125 -----d~~~l~~~i~---~~~tklV~ie~p~NPtG~v~-dl~~I~~la~~~gi~livD~t~a~~--~~~~~l~~GaDivv 193 (385)
T PRK08574 125 -----STEDIIEAIK---EGRTKLVFIETMTNPTLKVI-DVPEVAKAAKELGAILVVDNTFATP--LLYRPLRHGADFVV 193 (385)
T ss_pred -----CHHHHHHhcC---ccCceEEEEECCCCCCCEec-CHHHHHHHHHHcCCEEEEECCCCcc--ccCChhhhCCcEEE
Confidence 6899999997 5 8999999998 5789887 8999999999999999999998533 22345578999999
Q ss_pred eCCcccccccCCCCCCceEEEEE-cccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~-~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
+|++|+++.| |...+|.+++ ++++...+... + ...+...+ + ..+|. ...|-+-
T Consensus 194 ~S~sK~l~g~---~d~~gG~vi~~~~~~~~~~~~~------------~-~~~g~~~~-----p---~~a~l--~l~~l~t 247 (385)
T PRK08574 194 HSLTKYIAGH---NDVVGGVAVAWSGEFLEELWEW------------R-RRLGTIMQ-----P---FEAYL--VLRGLKT 247 (385)
T ss_pred eeCceeecCC---CCceeEEEEECcHHHHHHHHHH------------H-HhcCCCCC-----H---HHHHH--HHcccCc
Confidence 9999998422 1112464555 44444332100 0 00111111 1 11232 3334445
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 001989 868 LTEASKIAILNANYMAKRLEK 888 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~ 888 (985)
+..+.++..+++.++.+.|++
T Consensus 248 L~~R~~~~~~na~~la~~L~~ 268 (385)
T PRK08574 248 LEVRFERQCRNAMAIAEFLSE 268 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 667778888899999999986
No 378
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=99.61 E-value=8.7e-14 Score=160.27 Aligned_cols=306 Identities=14% Similarity=0.051 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
.+++++++++++|.+.+ +.+++|++|...++.++ +.+++++||++...|......+...|++++.++++++
T Consensus 33 ~~~~e~~la~~~g~~~~-v~~~sgt~al~~~l~~~-------~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d~~~ 104 (375)
T PRK11706 33 TRRCQQWLEQRFGSAKV-LLTPSCTAALEMAALLL-------DIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIRPDT 104 (375)
T ss_pred HHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHHh-------CCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCCCc
Confidence 45778889999998753 45567777653333322 1247899999998777777777889999999999876
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCC-CCccCCcEEEeCC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS-PGYIGADVCHLNL 791 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~-pg~~g~Di~~~s~ 791 (985)
+.+|+++++++++ ++|++|+++++ +|... |+++|.++|+++|+++++|++|..+...-.. .+.+ .|+.++|+
T Consensus 105 ~~~d~~~le~~i~---~~tk~i~~~~~--~G~~~-~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~~-~~~~~~Sf 177 (375)
T PRK11706 105 MNIDETLIEAAIT---PKTRAIVPVHY--AGVAC-EMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTI-GHIGCFSF 177 (375)
T ss_pred CCcCHHHHHHhcC---CCCeEEEEeCC--CCCcc-CHHHHHHHHHHcCCEEEEECccccccccCCeeeecC-cCEEEEeC
Confidence 5799999999997 78999998764 68776 8999999999999999999998644311111 2332 58889998
Q ss_pred c--ccccccCCCCCCceEEEEEcccccCcCCCC-ccccCCCC-CC-CCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 792 H--KTFCIPHGGGGPGMGPIGVKKHLAPFLPSH-PVVSTGGI-PA-PEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 792 h--K~l~~p~g~GGPg~G~i~~~~~l~~~lp~~-~~g~~~~~-~~-~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
| |.++. |-|++++..++++...+... ..|...+. .. +........+..++.-+...++...+-++
T Consensus 178 ~~~K~l~~-----g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~----- 247 (375)
T PRK11706 178 HETKNYTA-----GEGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLE----- 247 (375)
T ss_pred CCCccccc-----cCCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHH-----
Confidence 8 88742 22344554445544322100 00100000 00 00000000011111101121222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC--C-eeec-CCCC--ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC----
Q 001989 867 GLTEASKIAILNANYMAKRLEKHY--P-ILFR-GVNG--TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT---- 936 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~g~--~-l~~~-~~~~--~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~---- 936 (985)
.+.+..++..++++++.+.|.+.. + +..+ .+.+ ...+.+.+.++ .+.+..++.+.|.++||.+..
T Consensus 248 ~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~r~~l~~~L~~~gI~~~~~~~p 322 (375)
T PRK11706 248 AADRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLR-----DLEDRSALINFLKEAGIMAVFHYIP 322 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEEC-----CcCCHHHHHHHHHHCCCCccccCCc
Confidence 244455556677777888786521 1 2211 1111 12333444443 134678999999999998531
Q ss_pred CC--------------CC-----CCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 937 MS--------------WP-----VPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 937 ~~--------------~p-----~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+. +| ....+.+-+....+++|+++ .++++++++
T Consensus 323 ~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~--i~~~i~~~~ 374 (375)
T PRK11706 323 LHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRT--VIDTILEFF 374 (375)
T ss_pred cCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHH--HHHHHHHHh
Confidence 11 11 12446666666789999999 667776643
No 379
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=99.61 E-value=6.4e-14 Score=162.27 Aligned_cols=297 Identities=11% Similarity=0.083 Sum_probs=180.6
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Ccc-ceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSF-SLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~-~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+.+.+++.+..|. +.. .+..++|++ |.. ++++.+. .++|+|+++++.+..+...++..|++
T Consensus 68 ~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~---~~~~~l~-----~~gd~Vlv~~P~y~~~~~~~~~~g~~ 139 (388)
T PRK07366 68 HGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTA---HLPLAVL-----NPGDFALLLDPGYPSHAGGVYLAGGQ 139 (388)
T ss_pred CCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHH---HHHHHhC-----CCCCEEEEcCCCCcchHHHHHhcCCE
Confidence 56666666666666655564 444 466555544 443 2333221 47899999998887787888899999
Q ss_pred EEEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cCCC
Q 001989 704 IVSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VGLT 777 (985)
Q Consensus 704 vv~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~l~ 777 (985)
++.+|++++ ...|++++++.+. +++++|++++| |++|.+. ..+++|.++|+++|+++++|.++..-. .+-.
T Consensus 140 ~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~ 216 (388)
T PRK07366 140 IYPMPLRAENDFLPVFADIPTEVL---AQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEV 216 (388)
T ss_pred EEEEECCCccCCCCCHHHHHHhhc---ccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCC
Confidence 999999754 4688999988776 67899999998 5799985 247788889999999999999874211 1100
Q ss_pred -CC--Cc---cC-CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhh
Q 001989 778 -SP--GY---IG-ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 778 -~p--g~---~g-~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~ 850 (985)
.+ .. .+ .-+++.|+.|+|++| |.++|++++++++...+.... ...++++ ..
T Consensus 217 ~~~~~~~~~~~~~~vi~~~SfSK~~g~~----GlRiG~~v~~~~li~~l~~~~--------------~~~~~~~----~~ 274 (388)
T PRK07366 217 EPPSILQADPEKSVSIEFFTLSKSYNMG----GFRIGFAIGNAQLIQALRQVK--------------AVVDFNQ----YR 274 (388)
T ss_pred CCCChhhCCCCcccEEEEeecccccCCc----chhheehcCCHHHHHHHHHHH--------------hhcccCC----CH
Confidence 01 11 11 125677888988654 789999998877665442110 0011111 01
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH-H
Q 001989 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL-M 928 (985)
Q Consensus 851 ~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L-~ 928 (985)
....++.+.+.. ..+-+++..+...++.+++.+.|++ ++.. ..+.+..+ +.++++. ..+.+..+++++| .
T Consensus 275 ~~~~~a~~~l~~-~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~--~~p~~g~f--~~~~~~~---~~~~~~~~~~~~l~~ 346 (388)
T PRK07366 275 GILNGAIAALTG-PQATVQQTVQIFRQRRDAFINALHQIGWPV--PLPEATMY--VWAKLPE---PWQGNSVEFCTQLVA 346 (388)
T ss_pred HHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHCCCcc--cCCCeeEE--EEEECCc---ccCCCHHHHHHHHHH
Confidence 111122222211 2344555566677788888888876 3332 22222222 3455541 0012467788777 5
Q ss_pred HCCCccCCC-CCC--CCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 929 DYGFHGPTM-SWP--VPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 929 ~~Gi~~~~~-~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
++|+.+... .|+ ..+++||++. .+.+++++ .++.|.+
T Consensus 347 ~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~--~l~rl~~ 386 (388)
T PRK07366 347 QTGVAASPGSGFGKSGEGYVRFALV--HDPDILEE--AVERIAA 386 (388)
T ss_pred hCCEEEeCchHhCcCCCCeEEEEec--CCHHHHHH--HHHHHHH
Confidence 679986532 232 2479999986 35788887 5455543
No 380
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.61 E-value=3.4e-14 Score=166.20 Aligned_cols=292 Identities=15% Similarity=0.198 Sum_probs=175.9
Q ss_pred HHHHHHHHHHh-CCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHC------------
Q 001989 635 NNLGEWLCTIT-GFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMC------------ 700 (985)
Q Consensus 635 ~e~~~~la~l~-G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~------------ 700 (985)
.++.+++++++ +.+ ..++.+||++|+++++++++.+. ++++||. ...+||.........
T Consensus 93 ~~la~~L~~~~~~~~-~v~~~~sGseA~e~Aik~a~~~~------g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~ 165 (426)
T PRK00062 93 VELAELVIELVPSIE-MVRMVNSGTEATMSAIRLARGYT------GRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDS 165 (426)
T ss_pred HHHHHHHHHhCCCCC-EEEEecCHHHHHHHHHHHHHHHh------CCCeEEEEcCccCCchhhhhhccCccccccCCCCC
Confidence 46778888876 343 35677999999999999888752 3456665 667888754332211
Q ss_pred -CcE------EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEc-CCCccccccC----HHHHHHHHHHcCCEEEEEcc
Q 001989 701 -GMK------IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTY-PSTHGVYEEG----IDEICKIIHDNGGQVYMDGA 768 (985)
Q Consensus 701 -G~~------vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~-pn~~G~i~~d----i~eI~~la~~~galliVD~a 768 (985)
+.. +..+|. .|++++++.++++.+++++|+++. ++..|.+. + +++|.++|+++|+++++|++
T Consensus 166 ~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~-~~~~~l~~l~~l~~~~~~llI~DEv 239 (426)
T PRK00062 166 PGVPEDFAKHTLTAPY-----NDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVP-PKPGFLEGLRELCDEHGALLIFDEV 239 (426)
T ss_pred CCCCcccccceEEcCC-----CCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEeec
Confidence 110 111222 389999999975556788888874 45678776 5 89999999999999999999
Q ss_pred ccccc--cCCCCCCccC--CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCC
Q 001989 769 NMNAQ--VGLTSPGYIG--ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAA 844 (985)
Q Consensus 769 ~~~~~--~~l~~pg~~g--~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s 844 (985)
|. ++ +.......++ +|++++ .|.++ +|..+|++++++++.+.+... +. ....+
T Consensus 240 ~~-G~r~g~~~~~~~~~~~pDi~~~--gK~l~-----~G~p~ga~~~~~~i~~~~~~~--~~-------------~~~~~ 296 (426)
T PRK00062 240 MT-GFRVALGGAQGYYGVTPDLTTL--GKIIG-----GGLPVGAFGGRREIMEQLAPL--GP-------------VYQAG 296 (426)
T ss_pred hh-ccccCCccHHHHhCCCcchHhh--hhHhh-----CCCcceeeeEHHHHHHhhccC--CC-------------ceecc
Confidence 84 32 1111111122 576543 47774 344466777787776655311 00 00011
Q ss_pred cchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCccc----c
Q 001989 845 APWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGLKN----T 915 (985)
Q Consensus 845 ~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~~~----~ 915 (985)
++.+++..++++.+.|..+..+. ..++..++.++++++|++. .++. ..+ .+..+ .+.+..+.... .
T Consensus 297 T~~~~p~~~aaa~a~L~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~vrg-~G~~~-~i~l~~~~~~~~~~~~ 371 (426)
T PRK00062 297 TLSGNPLAMAAGLATLKLLKEPG---FYEELEALTKRLAEGLKEAAKKAGIPLTVNR-VGSMF-GLFFTDEPVTNYADAK 371 (426)
T ss_pred cCcCCHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHHcCCceEEEE-ecceE-EEEEecCCCcchhhhc
Confidence 22345566667778888776543 4456667778888877641 2221 112 12222 22222110000 0
Q ss_pred CC--CCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 916 AG--IEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 916 ~g--~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.+ .....+.+.|.++|+.+....+ +.+++ +..+|++|||+ +++++++++.++
T Consensus 372 ~~~~~~~~~i~~~l~~~Gv~v~~~~~---~~~~~--~~~~t~~ei~~--~~~~l~~~l~~~ 425 (426)
T PRK00062 372 KSDTERFARFFHAMLDEGVYLAPSQF---EAGFV--SAAHTDEDIEK--TLEAARKAFAAL 425 (426)
T ss_pred cccHHHHHHHHHHHHHCCeEeecCCc---Cceee--eccCCHHHHHH--HHHHHHHHHHhh
Confidence 00 0135788899999999865433 35555 46889999999 788998888654
No 381
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=99.61 E-value=5.1e-14 Score=161.15 Aligned_cols=280 Identities=11% Similarity=0.052 Sum_probs=171.3
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
.++++.+++++|.+...+..++|++ +. ..+++.+ .+++ +++..+.+..+...++..|++++.+|.+++
T Consensus 58 ~~lr~~ia~~~~~~~~~i~it~Ga~~~l---~~~~~~l------~~g~-viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~ 127 (356)
T PRK08056 58 RHLHQALARHHQVPASWILAGNGETESI---FAVVSGL------KPRR-AMIVTPGFAEYRRALQQVGCEIRRYSLREAD 127 (356)
T ss_pred HHHHHHHHHHhCcChhhEEECCCHHHHH---HHHHHHh------CCCC-EEEeCCCcHHHHHHHHHcCCeEEEEeccccc
Confidence 5788899999998876666655654 33 2333332 2455 555555444445557889999999998643
Q ss_pred -CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccc-cC--C-CCCCccC
Q 001989 713 -GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQ-VG--L-TSPGYIG 783 (985)
Q Consensus 713 -g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~-~~--l-~~pg~~g 783 (985)
..+| +++.+.+. +++++|++++| |++|.+. + +++|+++|+++|+++++|+++..-. .+ . .......
T Consensus 128 ~~~~~-~~~~~~~~---~~~k~v~l~~p~NPTG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~ 202 (356)
T PRK08056 128 GWQLT-DAILEALT---PDLDCLFLCTPNNPTGLLP-ERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNP 202 (356)
T ss_pred CCCcc-HHHHHhcc---CCCCEEEEeCCcCCCCCCC-CHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCC
Confidence 3455 45556665 78899999999 5799986 5 8889999999999999999862110 00 0 0011234
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
.++++.|++|+|++| |.++|+++++ +++...+.... ...+++ .....++...+.
T Consensus 203 ~~i~~~S~SK~~~~~----G~RiG~~v~~~~~~~~~l~~~~--------------~~~~~~------~~~~~~a~~~l~- 257 (356)
T PRK08056 203 HLWVLRSLTKFYAIP----GLRLGYLVNSDDAAVARMRRQQ--------------MPWSIN------AFAALAGEVILQ- 257 (356)
T ss_pred CEEEEEechhhccCc----chhheeeecCCHHHHHHHHHhC--------------CCCchh------HHHHHHHHHHhC-
Confidence 568889999999765 7899999874 34433321100 001111 111111222221
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-CCC-
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-SWP- 940 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~p- 940 (985)
+.+-+++..++..++++++.+.|++...+....+.+ .+ +.++++ .+..++++.|.++||.+... .|+
T Consensus 258 -~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~-~~--~~~~~~-------~~~~~~~~~l~~~gI~v~~~~~f~~ 326 (356)
T PRK08056 258 -DRAYQQATWQWLAEEGARFYQALCALPLLTVWPGRA-NY--LFLRCE-------RPDIDLQRALLTQRILIRSCANYPG 326 (356)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCCC-cE--EEEEcC-------CChHHHHHHHHHCCeEEEECCCCCC
Confidence 223334445556777888888887622222222222 22 335543 24578999999999987542 232
Q ss_pred -CCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 941 -VPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 941 -~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
..+++||++ .+.++.++ +++.|+++
T Consensus 327 ~~~~~iRis~---~~~~~~~~--l~~~l~~~ 352 (356)
T PRK08056 327 LDSRYYRVAI---RSAAENER--LLAALRNV 352 (356)
T ss_pred CCCCEEEEEE---cCHHHHHH--HHHHHHHH
Confidence 236899998 57899999 66666655
No 382
>PRK07568 aspartate aminotransferase; Provisional
Probab=99.61 E-value=1.5e-13 Score=159.56 Aligned_cols=294 Identities=15% Similarity=0.132 Sum_probs=176.7
Q ss_pred HHHHHHHHHh-----CCCccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC
Q 001989 636 NLGEWLCTIT-----GFDSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT 709 (985)
Q Consensus 636 e~~~~la~l~-----G~~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~ 709 (985)
++++.+++++ +.+...+.. ++|++|...+ ++.+. .++++|+++++.++.+...++..|++++.++.
T Consensus 70 ~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~---~~~l~-----~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~ 141 (397)
T PRK07568 70 ELREAFAKYYKKWGIDVEPDEILITNGGSEAILFA---MMAIC-----DPGDEILVPEPFYANYNGFATSAGVKIVPVTT 141 (397)
T ss_pred HHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHH---HHHhc-----CCCCEEEEecCCCccHHHHHHHcCCEEEEeec
Confidence 3444555554 344444444 4455555333 32221 36789999888777666667889999999998
Q ss_pred CC-CC-C-CCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEccccccc-cC--CCCCC
Q 001989 710 DA-KG-N-INIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VG--LTSPG 780 (985)
Q Consensus 710 d~-~g-~-iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~--l~~pg 780 (985)
+. +| . .|+++|+++++ +++++|++++|+ ++|.+.+ ++++|+++|+++|+++++|+++..-. .+ .....
T Consensus 142 ~~~~g~~~~~~~~l~~~~~---~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~ 218 (397)
T PRK07568 142 KIEEGFHLPSKEEIEKLIT---PKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSAL 218 (397)
T ss_pred CcccCCCCCCHHHHHHhcC---ccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChh
Confidence 63 34 3 36899999987 788999999994 7998852 58999999999999999999873110 11 00111
Q ss_pred cc----CCcEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHH
Q 001989 781 YI----GADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 781 ~~----g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~ 855 (985)
.+ .--+++.|++|+|+.| |.++|++++. +++...+.... . . ..+.+...+. +
T Consensus 219 ~~~~~~~~~i~~~S~SK~~~~~----G~R~G~~~~~~~~~~~~~~~~~------------~-~--~~~~s~~~q~----~ 275 (397)
T PRK07568 219 SLEGLEDRVIIIDSVSKRYSAC----GARIGCLISKNKELIAAAMKLC------------Q-A--RLSPPTLEQI----G 275 (397)
T ss_pred hcCCCcCCEEEEecchhhccCC----CcceEEEecCCHHHHHHHHHHh------------h-c--cCCCCcHHHH----H
Confidence 11 1126777889988643 6789999875 44443221000 0 0 0111111121 1
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH------
Q 001989 856 SYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD------ 929 (985)
Q Consensus 856 a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~------ 929 (985)
+..++. .+.+-+++..+...++++++.+.|++...+.+..+.+.++ +.++++ ..+..++++.|.+
T Consensus 276 ~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~--~~~~l~------~~~~~~~~~~l~~~~~~~~ 346 (397)
T PRK07568 276 AAALLD-TPESYFDEVREEYKKRRDILYEELNKIPGVVCEKPKGAFY--IIAKLP------VDDAEDFAKWLLTDFNYNG 346 (397)
T ss_pred HHHHhh-CCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCcceE--EEEecC------CCCHHHHHHHHHhhccccc
Confidence 112232 2334455555567778888989987622222222223222 235554 2256788888865
Q ss_pred CCCccCCC-CC---C--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 930 YGFHGPTM-SW---P--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 930 ~Gi~~~~~-~~---p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+|+.+... .| + ..+++|+++. .+.+++++ .++.|.+.+++..+
T Consensus 347 ~gv~v~pg~~f~~~~~~~~~~iRls~~--~~~~~~~~--~~~~l~~~l~~~~~ 395 (397)
T PRK07568 347 ETVMVAPASGFYATPGLGKNEIRIAYV--LNEEDLKR--AMEILKEALEKYNK 395 (397)
T ss_pred ceEEEeCchHhcCCCCCCCCeEEEEEe--CCHHHHHH--HHHHHHHHHHHhhc
Confidence 47875431 12 2 1368999986 45799999 77888888876553
No 383
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=99.61 E-value=1.4e-13 Score=157.29 Aligned_cols=228 Identities=18% Similarity=0.125 Sum_probs=154.4
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe-Cchhh
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS-DLKDI 291 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v-~~~~l 291 (985)
..++++.+|++.|.+. +..+.+|++++.+++.. + ++||+||++...+......+.......++++.+. |++++
T Consensus 56 ~~~le~~lA~leg~~~--~v~~~sG~aAi~~~l~~--l--~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~~~~~d~~~l 129 (364)
T PRK07269 56 RAKLEETLAAIESADY--ALATSSGMSAIVLAFSV--F--PVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTYANTEEEL 129 (364)
T ss_pred HHHHHHHHHHHhCCCe--EEEeCCHHHHHHHHHHH--h--CCCCEEEEecCCcCchHHHHHHHHhcCcEEEEecCCHHHH
Confidence 3457899999998764 78889999887765532 2 3899999999888766654444333346665543 46778
Q ss_pred hc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCCC
Q 001989 292 DY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGGP 368 (985)
Q Consensus 292 ~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GGP 368 (985)
++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|-++|+||+++|+ |.++++ |.-
T Consensus 130 ~~~i~~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD-~t~~~~~~~~pl~~gaDivv~S~tK~l~g~---~d~ 205 (364)
T PRK07269 130 IAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVD-NTFYSPIYQRPIELGADIVLHSATKYLSGH---NDV 205 (364)
T ss_pred HHhcCcCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEE-CCCcccccCCchhhCCcEEEecCceeccCC---Ccc
Confidence 77 8889999999998 77999999999999999999999995 34454555567789999999998 777643 211
Q ss_pred cEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHH
Q 001989 369 HAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIA 447 (985)
Q Consensus 369 ~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~ 447 (985)
-.|++++++ ++.+++- ..+...| .| .+++ .| |+...+-+-++.+.
T Consensus 206 ~gG~v~~~~~~l~~~~~-------------------------~~~~~~G---~~-~s~~---~a--~l~~~~L~tL~~r~ 251 (364)
T PRK07269 206 LAGVVVTNDLELYEKLF-------------------------YNLNTTG---AV-LSPF---DS--YLLMRGLKTLSLRM 251 (364)
T ss_pred cceEEEeCcHHHHHHHH-------------------------HHHHHhC---CC-CCHH---HH--HHHHcCCCcHHHHH
Confidence 135666653 4433330 0000011 11 0122 22 23555666788888
Q ss_pred HHHHHHHHHHHHHHhcCCCeE-EcCCCCcceEEEecCC
Q 001989 448 QRVHGLAGTFALGLKKLGTVE-VQGLPFFDTVKVKCAD 484 (985)
Q Consensus 448 ~~~~~~a~~l~~~L~~~g~~~-~~~~~~~~~~~~~~~~ 484 (985)
++..+++.++++.|++...+. ++-++....++|...+
T Consensus 252 ~~~~~na~~~a~~L~~~p~v~~v~ypg~gg~~sf~~~~ 289 (364)
T PRK07269 252 ERSTANAQEVVAFLKKSPAVKEVLYTGKGGMISFKVAD 289 (364)
T ss_pred HHHHHHHHHHHHHHHhCCCccEEeCCCcCcEEEEEECC
Confidence 889999999999999875354 3333444456666544
No 384
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=99.61 E-value=4.7e-14 Score=169.17 Aligned_cols=296 Identities=15% Similarity=0.113 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
+.++|+.+|++||.+...|..|++|+|+.++++++. +++|+||++++.|-+....+.+.|+..+++++..+
T Consensus 197 i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~--------~~Gd~VLvdRN~HKSv~haLilsga~PVYl~P~rn~ 268 (714)
T PRK15400 197 HKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSA--------PAGSTVLIDRNCHKSLTHLMMMSDVTPIYFRPTRNA 268 (714)
T ss_pred HHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhc--------CCCCEEEeecccHHHHHHHHHHcCCeEEEecccccc
Confidence 678999999999999988888888888877776653 47899999999998888888999999999976542
Q ss_pred ----CCCC-----HHHHHHHHHhcCCCEE---EEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC---
Q 001989 713 ----GNIN-----IEELRKAAEANRDNLS---TLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT--- 777 (985)
Q Consensus 713 ----g~iD-----~e~L~~~i~~~~~~t~---~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~--- 777 (985)
|.++ .+.++++|.+++ +.+ .+++++|++.|++. |+++|.++||.++ ++||+||. +...|.
T Consensus 269 ~Gi~g~I~~~~~~~e~i~~~i~~~p-~ak~p~~~vit~pTYdG~~y-d~~~I~~~~~~~~--ilvDEAwg-ah~~F~p~~ 343 (714)
T PRK15400 269 YGILGGIPQSEFQHATIAKRVKETP-NATWPVHAVITNSTYDGLLY-NTDFIKKTLDVKS--IHFDSAWV-PYTNFSPIY 343 (714)
T ss_pred cCCccCCCccccCHHHHHHHHHhCc-cccCccEEEEECCCCccEec-CHHHHHHHhCCCC--EEEEccch-hhhccCccc
Confidence 4456 899999998653 334 79999999999999 9999999999887 68999983 222221
Q ss_pred ---CCCccCC---c--EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 778 ---SPGYIGA---D--VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 778 ---~pg~~g~---D--i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
.+-..|+ | +++.|.||+++.- -...+|-++.. +....+- + ........|..|..
T Consensus 344 ~~~sam~~ga~~~~~i~vtQStHKtL~al-----TQaS~LHvkg~----vd~~~~n-------~--a~~m~~STSPsY~l 405 (714)
T PRK15400 344 EGKCGMSGGRVEGKVIYETQSTHKLLAAF-----SQASMIHVKGD----VNEETFN-------E--AYMMHTTTSPHYGI 405 (714)
T ss_pred CCcChhhcCCCCCCceEEEEchhhcccch-----hHHhHHHHcCC----CCHHHHH-------H--HHHHHcCCCcHHHH
Confidence 1112345 5 9999999998521 12233322211 1100000 0 00000111222333
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--c------CCeeecCC---------------C--------
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--H------YPILFRGV---------------N-------- 898 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g------~~l~~~~~---------------~-------- 898 (985)
.+.+-.|.++|.. ..| ++..++..+.+..++++|.+ + +.+..+.. .
T Consensus 406 ~ASLD~a~~~m~~--~~G-~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~ 482 (714)
T PRK15400 406 VASTETAAAMMKG--NAG-KRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNE 482 (714)
T ss_pred HHHHHHHHHHHHh--hhh-HHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCccccccc
Confidence 3333334344432 233 23455667777778877754 2 22211000 0
Q ss_pred ----CceeeEEEEEecCcc-----ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 899 ----GTVAHEFIVDLRGLK-----NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 899 ----~~~~~~~iv~~~~~~-----~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
++. -+.+..+++. .+.|+++..+.+.|.++||.+-... ...+.+.++..+|++++++ +++.|.+
T Consensus 483 ~~~lDP~--Klti~tpgi~~~g~~~~~Gipg~~v~~~L~e~gI~~E~~d---~~~iLfl~s~g~t~~~~~~--L~~aL~~ 555 (714)
T PRK15400 483 HMYLDPI--KVTLLTPGMKKDGTMSDFGIPASIVAKYLDEHGIVVEKTG---PYNLLFLFSIGIDKTKALS--LLRALTD 555 (714)
T ss_pred ccccCCc--eEEEEeCCCCCCccccccCCCHHHHHHHHHHcCCEEEecC---CCeEEEEeCCCCCHHHHHH--HHHHHHH
Confidence 111 1233333221 1247788999999999999875433 3688999999999999999 5566766
Q ss_pred H
Q 001989 970 K 970 (985)
Q Consensus 970 ~ 970 (985)
+
T Consensus 556 f 556 (714)
T PRK15400 556 F 556 (714)
T ss_pred H
Confidence 5
No 385
>PRK07671 cystathionine beta-lyase; Provisional
Probab=99.61 E-value=1.1e-13 Score=159.16 Aligned_cols=212 Identities=17% Similarity=0.192 Sum_probs=149.1
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---h
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---K 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~ 289 (985)
..++++.+|++.|.+. ..++.+|++++.+++ +. . ++||+||+++..|++....+...++..|++++.++. +
T Consensus 52 ~~~Le~~lA~l~g~~~--~~~~~sG~aai~~~~-~~-l--~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~ 125 (377)
T PRK07671 52 RAALEELIAVLEGGHA--GFAFGSGMAAITAVM-ML-F--SSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDTSNLE 125 (377)
T ss_pred HHHHHHHHHHHhCCCc--eEEeCCHHHHHHHHH-HH-h--CCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECCCCHH
Confidence 4568899999999876 456778887666543 22 2 389999999999998877776656678999999875 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|.++|+||+++|. |+|++|.+
T Consensus 126 ~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD-~a~~~~~~~~p~~~g~Divv~S~sK~l~G~~~-- 202 (377)
T PRK07671 126 EVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVD-NTFMTPYWQSPISLGADIVLHSATKYLGGHSD-- 202 (377)
T ss_pred HHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEE-CCCCccccCChhhhCCeEEEecCcccccCCcc--
Confidence 5666 8889999999998 78999999999999999999999995 34444445566789999999998 87765421
Q ss_pred CCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHH
Q 001989 367 GPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 367 GP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~ 445 (985)
--.|++.+++ ++.+++. ..|..-| .. ..+. . .|+...+.+-+..
T Consensus 203 -~~~G~~v~~~~~l~~~~~-------------------------~~~~~~g--~~--~~~~---~--a~l~~~~l~tl~~ 247 (377)
T PRK07671 203 -VVAGLVVVNSPELAEDLH-------------------------FVQNSTG--GI--LGPQ---D--SWLLLRGLKTLGI 247 (377)
T ss_pred -ceeEEEEeCcHHHHHHHH-------------------------HHHHhhc--CC--CCHH---H--HHHHHcCcChHHH
Confidence 1246666643 4443331 0000000 00 0111 1 1234455556677
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeE
Q 001989 446 IAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
..++..+++.++.+.|++..++.
T Consensus 248 R~~~~~~na~~la~~L~~~~~v~ 270 (377)
T PRK07671 248 RMEEHETNSRAIAEFLNNHPAVN 270 (377)
T ss_pred HHHHHHHHHHHHHHHHHcCCCee
Confidence 78888899999999999875454
No 386
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.61 E-value=3.4e-13 Score=156.93 Aligned_cols=144 Identities=16% Similarity=0.163 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~vv~v~~ 709 (985)
..++++.++++.|.+.+ +.++||+.|+.+++.++. .+|++||++...|+.... .+...|++++.++
T Consensus 71 ~~~Le~~lA~l~g~~~a-v~~sSG~aAi~~al~all--------~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd- 140 (436)
T PRK07812 71 QDVVEQRIAALEGGVAA-LLLASGQAAETFAILNLA--------GAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE- 140 (436)
T ss_pred HHHHHHHHHHHhCCCeE-EEEccHHHHHHHHHHHHh--------CCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC-
Confidence 44788999999998775 556788877765554432 367899998776654332 2344788888885
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+. .|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|++++||+++..+ .+..|.++|+|+++
T Consensus 141 d~---~d~e~l~~ai~---~~tklV~ie~~sNp~G~v~-Dl~~I~~la~~~gi~liVD~t~a~~--~~~~pl~~GaDivv 211 (436)
T PRK07812 141 DP---DDLDAWRAAVR---PNTKAFFAETISNPQIDVL-DIPGVAEVAHEAGVPLIVDNTIATP--YLIRPLEHGADIVV 211 (436)
T ss_pred CC---CCHHHHHHhCC---CCCeEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCccc--ccCCchhcCCCEEE
Confidence 32 38999999997 88999999998 5799998 9999999999999999999988532 33467788999999
Q ss_pred eCCccccc
Q 001989 789 LNLHKTFC 796 (985)
Q Consensus 789 ~s~hK~l~ 796 (985)
.|+||+++
T Consensus 212 ~S~tK~lg 219 (436)
T PRK07812 212 HSATKYLG 219 (436)
T ss_pred EecccccC
Confidence 99999985
No 387
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=99.61 E-value=4.6e-14 Score=161.79 Aligned_cols=300 Identities=17% Similarity=0.135 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC-C
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD-A 711 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d-~ 711 (985)
..+++++.+++++|.+.+ +.++||+.|.+.++.++ |.+++++||+|...+.....+....|+++++++++ +
T Consensus 26 ~~~~fE~~~a~~~g~~~~-~~~~sgt~Al~~al~~l-------~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~ 97 (363)
T PF01041_consen 26 YVEEFEKEFAEYFGVKYA-VAVSSGTSALHLALRAL-------GLGPGDEVIVPAYTFPATASAILWAGAEPVFVDIDPE 97 (363)
T ss_dssp HHHHHHHHHHHHHTSSEE-EEESSHHHHHHHHHHHT-------TGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BETT
T ss_pred HHHHHHHHHHHHhCCCeE-EEeCChhHHHHHHHHhc-------CCCcCceEecCCCcchHHHHHHHHhccEEEEEeccCC
Confidence 466899999999997764 55678888876666543 23478999999875555556667899999999998 4
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CCCCccCCcEEEeC
Q 001989 712 KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TSPGYIGADVCHLN 790 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~~pg~~g~Di~~~s 790 (985)
++.+|+++++++|+ ++|++|++++ ..|... |+++|.++|+++|++||-|+||+.+.--- ...|.+| |+.++|
T Consensus 98 ~~~id~~~~~~~i~---~~t~ai~~~h--~~G~~~-d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~g-d~~~fS 170 (363)
T PF01041_consen 98 TLNIDPEALEKAIT---PKTKAILVVH--LFGNPA-DMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSFG-DIAIFS 170 (363)
T ss_dssp TSSB-HHHHHHHHH---TTEEEEEEE---GGGB----HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSSS-SEEEEE
T ss_pred cCCcCHHHHHHHhc---cCccEEEEec--CCCCcc-cHHHHHHHHHHcCCcEEEccccccCceeCCEeccCCC-CceEec
Confidence 69999999999999 8999999987 678887 89999999999999999999996432111 1345554 999999
Q ss_pred Cc--ccccccCCCCCCceEEEEEcc-cccCcCCC-CccccCCCC-CCCCCCC-CCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 791 LH--KTFCIPHGGGGPGMGPIGVKK-HLAPFLPS-HPVVSTGGI-PAPEKSQ-PLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 791 ~h--K~l~~p~g~GGPg~G~i~~~~-~l~~~lp~-~~~g~~~~~-~~~~~~~-~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
+| |.+ + .| .+|++++++ ++.+.+.. +..|...+. .+...+. ...|..- +...++.+..-|
T Consensus 171 f~~~K~i--~--~g--eGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm----~~~~AAigl~QL---- 236 (363)
T PF01041_consen 171 FHPTKII--T--TG--EGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRM----SELQAAIGLAQL---- 236 (363)
T ss_dssp SSTTSSS-----SS--S-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-----BHHHHHHHHHHH----
T ss_pred CCCCCCC--c--CC--CCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCccccc----HHHHHHHHHHHH----
Confidence 87 444 2 12 347888874 33322210 011111000 0000000 0011111 122222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCe--eecCCCC--ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC--
Q 001989 865 SKGLTEASKIAILNANYMAKRLEKHYPI--LFRGVNG--TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-- 938 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~g~~l--~~~~~~~--~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-- 938 (985)
+.+.+..++..++++++.+.|.+...+ ....+.. ...+.+.+.++. ....+.+++.+.|.++||.+....
T Consensus 237 -~~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~---~~~~~rd~l~~~L~~~GI~~~~~~~~ 312 (363)
T PF01041_consen 237 -KRLDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPD---EALADRDELVEALRARGIETRPHYPK 312 (363)
T ss_dssp -HTHHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETC---CGCSTHHHHHHHHHHTTBEEBCSTSS
T ss_pred -HHhhhhHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccccc---cccchHHHHHHHHHHCCCcccccccC
Confidence 235555666678888999999874333 1111111 234445666542 001357899999999999765321
Q ss_pred ----CC-------------------CCCEEEEeccCCCCHHHHHHHHccCCh
Q 001989 939 ----WP-------------------VPGTLMIEPTESESKSWTGIVMLSSPS 967 (985)
Q Consensus 939 ----~p-------------------~~~~lris~t~~~t~eeId~~~~~~~l 967 (985)
.| ....|.+-.+...+.+|+++ .+++|
T Consensus 313 pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~--I~~~i 362 (363)
T PF01041_consen 313 PLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDY--IAEAI 362 (363)
T ss_dssp CGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHH--HHHHH
T ss_pred chhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHH--Hhhcc
Confidence 01 01456777778899999999 44443
No 388
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.61 E-value=1.2e-13 Score=154.85 Aligned_cols=303 Identities=16% Similarity=0.102 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH---HHHCCcEEEEEcCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT---AAMCGMKIVSVGTD 710 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~---a~~~G~~vv~v~~d 710 (985)
..++++++++++|.+.+ +.++||+.|...+++++. ..++|+||+|.. ++.+. .-..|+++++|++|
T Consensus 36 v~~FE~~~ae~~G~k~a-va~~sgT~AL~laL~al~-------ig~GDeVI~ps~---TfvATan~i~~~Ga~PVFvDid 104 (374)
T COG0399 36 VRRFEQAFAEYLGVKYA-VAVSSGTAALHLALLALA-------IGPGDEVIVPSF---TFVATANAVLLVGAKPVFVDID 104 (374)
T ss_pred HHHHHHHHHHHhCCCeE-EEecChHHHHHHHHHhcC-------CCCCCEEEecCC---chHHHHHHHHHcCCeEEEEecC
Confidence 45788999999999875 456778877755555332 358999999987 55554 45789999999999
Q ss_pred CC-CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CCCCccCCcEEE
Q 001989 711 AK-GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TSPGYIGADVCH 788 (985)
Q Consensus 711 ~~-g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~~pg~~g~Di~~ 788 (985)
++ +.+|++.||++|+ ++|++|+..+ ..|..- |+++|.++|++||++|+-|+||+.+..-- ...|.+ .|+.+
T Consensus 105 ~~T~nid~~~ie~aIt---~~tKAIipVh--l~G~~~-dm~~i~~la~~~~l~vIEDaAqa~Ga~y~gk~vGt~-Gd~~~ 177 (374)
T COG0399 105 PDTLNIDPDLIEAAIT---PRTKAIIPVH--LAGQPC-DMDAIMALAKRHGLPVIEDAAQAHGATYKGKKVGSF-GDIGA 177 (374)
T ss_pred CcccCCCHHHHHHHcc---cCCeEEEEeh--hccCCC-CHHHHHHHHHHcCCeEEEEcchhccCeecCcccccc-cceEE
Confidence 76 8999999999998 8899999866 778887 89999999999999999999996433211 234555 47877
Q ss_pred eCCcccccccCCCCCCceEEEEEcc-cccCcCCC-CccccCCCC-CCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPS-HPVVSTGGI-PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~-~~~g~~~~~-~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
+|+|-+= +++.| -+|.+.+++ ++.+.+.. +..|...+. .++. ....+... ....+. +++....-
T Consensus 178 fSF~~~K--~ittg--EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~--~~~~G~N~----rm~~iq---AAigl~QL 244 (374)
T COG0399 178 FSFHATK--NLTTG--EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYL--HEELGYNY----RLTEIQ---AAIGLAQL 244 (374)
T ss_pred EEecCCC--Ccccc--CceEEEeCCHHHHHHHHHHHHhCcCCCccccce--eeeccccc----CHHHHH---HHHHHHHH
Confidence 8775432 22333 346777774 44433210 011211100 0000 00000100 000111 11222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc--CCeeecCCCC-ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccC----CCC
Q 001989 866 KGLTEASKIAILNANYMAKRLEKH--YPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP----TMS 938 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~g--~~l~~~~~~~-~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~----~~~ 938 (985)
+.+.+..++..+++++..+.|++. +.+....... ...|.+.+.++. .+.+-+.+.+.|.++||... ++.
T Consensus 245 ~~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~----~~~~R~~l~~~L~~~gi~~~~~~~P~~ 320 (374)
T COG0399 245 ERLDEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDE----EGISRDALMESLKEAGVGAVVYFRPLH 320 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecC----CCCCHHHHHHHHHhCCCCceEEeeccc
Confidence 445566666677788888888762 2332222111 334555566541 14677899999999976521 111
Q ss_pred ---------------CCC-----CCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 939 ---------------WPV-----PGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 939 ---------------~p~-----~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+|. ...+.+-.....+.+|+++ .++++++++++
T Consensus 321 ~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~--V~~~l~~~~~~ 373 (374)
T COG0399 321 LQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDR--VIEALKEVLGS 373 (374)
T ss_pred cchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHH--HHHHHHHHhcc
Confidence 121 2567777778899999999 77888887753
No 389
>PRK08363 alanine aminotransferase; Validated
Probab=99.61 E-value=1.5e-13 Score=159.67 Aligned_cols=306 Identities=13% Similarity=0.059 Sum_probs=176.5
Q ss_pred hhHHHHHHHHHHHHHHHhC--CCccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITG--FDSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G--~~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+.+.+++....| .+...+.. +++++|...++ +.+. +++|.|+++++.|..+...++..|.++
T Consensus 70 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~---~~~~-----~~gd~Vl~~~p~y~~~~~~~~~~g~~~ 141 (398)
T PRK08363 70 EGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIF---GALL-----DPGDEILIPGPSYPPYTGLVKFYGGVP 141 (398)
T ss_pred CCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHH---HHhC-----CCCCEEEEcCCCCcchHHHHHHcCCEE
Confidence 4655444444444444335 33344444 44455553333 3221 478899999988877777788889988
Q ss_pred EEE-cCCCC-CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC-CC
Q 001989 705 VSV-GTDAK-GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG-LT 777 (985)
Q Consensus 705 v~v-~~d~~-g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~-l~ 777 (985)
+.+ +.+++ +.+|+++|+++++ +++++|++++| |++|.+. .++++|.++|+++|+++++|+++..-. .+ ..
T Consensus 142 v~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~ 218 (398)
T PRK08363 142 VEYRTIEEEGWQPDIDDIRKKIT---EKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHV 218 (398)
T ss_pred EEeccccccCCcCCHHHHHhhCC---cceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCccc
Confidence 888 55444 5799999999987 78899999998 5799886 138999999999999999999873210 01 00
Q ss_pred CCCcc-CC--cEEEeCCcccccccCCCCCCceEEEEE--cccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 778 SPGYI-GA--DVCHLNLHKTFCIPHGGGGPGMGPIGV--KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 778 ~pg~~-g~--Di~~~s~hK~l~~p~g~GGPg~G~i~~--~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
....+ .. -+++.|++|+|+.| |.++|++++ ++++.+.+....... ... ..+.+..++.
T Consensus 219 ~~~~~~~~~~vi~~~SfSK~~~~~----GlRiG~~~~~~~~~~~~~l~~~~~~~---------~~~--~~~~s~~~q~-- 281 (398)
T PRK08363 219 SPGSLTKDVPVIVMNGLSKVYFAT----GWRLGYIYFVDPEGKLAEVREAIDKL---------ARI--RLCPNTPAQF-- 281 (398)
T ss_pred CHHHcCcCCcEEEEecchhccCCc----cceEEEEEEeCcHHHHHHHHHHHHHH---------hcc--cccCChHHHH--
Confidence 00111 11 24567889987644 788999997 444332221100000 000 0111111111
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHH-HHHHHCC
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVA-KRLMDYG 931 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~-~~L~~~G 931 (985)
++..+|.. ..+-+++..++..++.+++.+.|++...+.+..+.+.++ +.+.++.. ...+..+++ +.|.++|
T Consensus 282 --~~~~~l~~-~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~~--~~~~l~~~---~~~~~~~~~~~~l~~~g 353 (398)
T PRK08363 282 --AAIAGLTG-PMDYLEEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFY--IFPRIEEG---PWKDDKEFVLDVLHEAH 353 (398)
T ss_pred --HHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCCEecCCCeEEE--EEEEeccC---CCCCHHHHHHHHHHhCC
Confidence 12223321 234555666667788888988887621222222223222 22344310 012344554 5567889
Q ss_pred CccCC-CCCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 932 FHGPT-MSWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 932 i~~~~-~~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
|.+.. ..|+ .++++||++. .+.+++++ .++.|++.+.+
T Consensus 354 V~v~~g~~f~~~~~~~iRis~~--~~~~~l~~--~l~~l~~~~~~ 394 (398)
T PRK08363 354 VLFVHGSGFGEYGAGHFRLVFL--PPVEILEE--AMDRFEEFMRE 394 (398)
T ss_pred EEEeCchhhCCCCCCeEEEEec--CCHHHHHH--HHHHHHHHHHH
Confidence 98643 2232 2478999985 56888888 66777776654
No 390
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=99.61 E-value=1.4e-13 Score=157.83 Aligned_cols=228 Identities=18% Similarity=0.180 Sum_probs=157.2
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--- 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~--- 289 (985)
..++++.+|++.|.+. ..++.+|++++.++. ++ . ++||+||+++..++.....+...++..|++++++|..
T Consensus 54 ~~~le~~la~l~g~~~--~~~~~sG~~ai~~~~-~l-l--~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~ 127 (366)
T PRK08247 54 RGVLEQAIADLEGGDQ--GFACSSGMAAIQLVM-SL-F--RSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNTASLK 127 (366)
T ss_pred HHHHHHHHHHHhCCCc--EEEEcCHHHHHHHHH-HH-h--CCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECCCCHH
Confidence 3567899999999987 467888888776543 32 2 3889999999999988887776667789999998764
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++.+| |++|.+.|+++|+++||++|+++++| +..+.+....|.++|+||+++|. |.++++ |
T Consensus 128 ~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD-~t~~~~~~~~p~~~g~di~i~S~sK~~~g~---~ 203 (366)
T PRK08247 128 AIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVD-NTFYTPVLQRPLEEGADIVIHSATKYLGGH---N 203 (366)
T ss_pred HHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEE-CCCccccccCchhcCCcEEEeecceeccCC---C
Confidence 4555 7889999999998 68999999999999999999999995 45555555566778999999998 877532 1
Q ss_pred CCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHH
Q 001989 367 GPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 367 GP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~ 445 (985)
+--.|++.++ +++.+.+. ..+.. ...|. +++ .+ |+...+-+-+..
T Consensus 204 d~~~G~iv~~~~~l~~~~~-------------------------~~~~~---~g~~~-s~~---~a--~l~~~~l~tl~~ 249 (366)
T PRK08247 204 DVLAGLVVAKGQELCERLA-------------------------YYQNA---AGAVL-SPF---DS--WLLIRGMKTLAL 249 (366)
T ss_pred ceeeeEEecChHHHHHHHH-------------------------HHHHh---cCCCC-ChH---HH--HHHHhccCcHHH
Confidence 2234677765 44443320 00000 01111 111 11 223334455666
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEcCCC-CcceEEEecCC
Q 001989 446 IAQRVHGLAGTFALGLKKLGTVEVQGLP-FFDTVKVKCAD 484 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~~~~~~~~~~ 484 (985)
+.++..+++..+.+.|++..++..+..| ...-++|.+++
T Consensus 250 r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf~~~~ 289 (366)
T PRK08247 250 RMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSFRLQD 289 (366)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEEEECC
Confidence 7777899999999999998447643222 33445565544
No 391
>PLN02721 threonine aldolase
Probab=99.60 E-value=8e-14 Score=159.12 Aligned_cols=273 Identities=15% Similarity=0.106 Sum_probs=172.1
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---- 288 (985)
..++++.+|+++|.+. +.++.+||.+..+++.+.. ..+||+|++++..|.+...... .++..|++++.++.
T Consensus 42 ~~~l~~~la~~~~~~~--~~~~~~Gs~a~~~~l~~~~--~~~gd~Vl~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~ 116 (353)
T PLN02721 42 ALRLEEEMAKIFGKEA--ALFVPSGTMGNLISVLVHC--DVRGSEVILGDNSHIHLYENGG-ISTLGGVHPRTVKNNEDG 116 (353)
T ss_pred HHHHHHHHHHHhCCce--eEEecCccHHHHHHHHHHc--cCCCCeEEEcCccceehhcccc-hhhhcCceeEecCCCcCC
Confidence 3567899999999875 5566777766554444432 1278999999999976655210 13356888887653
Q ss_pred ----hhhhc-cC-------CCEeEEEEEcC--CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCC----CCCC--
Q 001989 289 ----KDIDY-KS-------GDVCGVLVQYP--GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL----KPPG-- 345 (985)
Q Consensus 289 ----~~l~~-l~-------~~t~~V~v~~p--n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l----~~~~-- 345 (985)
+++++ ++ +++++|+++++ |++|.+.| +++|.++||++|+++++|. ...++.. .++.
T Consensus 117 ~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~-a~~~~~~~~~~~~~~~~ 195 (353)
T PLN02721 117 TMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDG-ARIFNASVALGVPVHRL 195 (353)
T ss_pred CcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEc-hhhhcchhhhCCCHHHH
Confidence 45555 55 68899998764 46788765 7899999999999999953 2222211 1122
Q ss_pred cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchh
Q 001989 346 ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQ 424 (985)
Q Consensus 346 ~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~ 424 (985)
..++|.++.+. |+|++ |..++++.++++++.+.... . ...++.+. .
T Consensus 196 ~~~~d~~~~s~sK~l~~------~~G~~~~~~~~~~~~~~~~~-----~-------------------~~~~~~~~---~ 242 (353)
T PLN02721 196 VKAADSVSVCLSKGLGA------PVGSVIVGSKSFIRKAKRLR-----K-------------------TLGGGMRQ---V 242 (353)
T ss_pred hhhCCEEEEecccccCC------ceeeEEecCHHHHHhHHHHH-----H-------------------hcCCCeeh---h
Confidence 34899988887 77753 33345666777665431100 0 00000000 0
Q ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEE-cCCCCcceEEEecC----C-HHHHHHHHHHcCce
Q 001989 425 ALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEV-QGLPFFDTVKVKCA----D-AHAIASAAYKIEMN 498 (985)
Q Consensus 425 ~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~----~-~~~v~~~L~~~GI~ 498 (985)
+..+. +++ ..+ .+-++. .++..++.+++.+.|++++++++ +..+..+-+.++.+ . ..++.++|.++||.
T Consensus 243 ~~~~~-~~~-~~l--~~~~~~-~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~ 317 (353)
T PLN02721 243 GVLAA-AAL-VAL--QENVPK-LEDDHKKAKLLAEGLNQIKGLRVNVAAVETNIVYFDITDGSRITAEKLCKSLEEHGVL 317 (353)
T ss_pred HHHHH-HHH-HHH--HHHHHH-HHHHHHHHHHHHHHHHhCCCcEEecCCccceEEEEEccCCccccHHHHHHHHHhCCcE
Confidence 11111 111 011 111222 23345678899999998844765 43332233444443 2 77899999999999
Q ss_pred eeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 499 LRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 499 ~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.....+.+|++++.+++++|+++++++|++
T Consensus 318 v~~~~~~~lR~~~~~~~~~~~i~~~~~~l~~ 348 (353)
T PLN02721 318 LMPGNSSRIRVVTHHQISDSDVQYTLSCFQQ 348 (353)
T ss_pred EecCCCceEEEEecCcCCHHHHHHHHHHHHH
Confidence 9876678999999999999999999999974
No 392
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.60 E-value=1.8e-13 Score=159.39 Aligned_cols=143 Identities=18% Similarity=0.181 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH----HHHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP----ATAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~----~~a~~~G~~vv~v~~ 709 (985)
..++++.++++.|.+.+ +.++||+.|+.+++.++. .++|+||+++..|+... ..++..|++++.++.
T Consensus 66 ~~~Le~~lA~leg~~~a-l~~~sG~~Ai~~al~~ll--------~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~ 136 (431)
T PRK08248 66 TDVFEKRIAALEGGIGA-LAVSSGQAAITYSILNIA--------SAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDP 136 (431)
T ss_pred HHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECC
Confidence 34688999999997654 567788887755554432 36889999887665322 234578999999987
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++.. +....|.++|+|+++
T Consensus 137 ~-----d~e~l~~ai~---~~tklV~l~sp~NPtG~v~-di~~I~~la~~~gi~vIvD~t~a~--~~~~~pl~~gaDivv 205 (431)
T PRK08248 137 S-----DPENFEAAIT---DKTKALFAETIGNPKGDVL-DIEAVAAIAHEHGIPLIVDNTFAS--PYLLRPIEHGADIVV 205 (431)
T ss_pred C-----CHHHHHHhcC---CCCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEeCCCCc--cccCChhHcCCCEEE
Confidence 3 8999999997 78999999998 5799998 899999999999999999998752 223456678999999
Q ss_pred eCCccccc
Q 001989 789 LNLHKTFC 796 (985)
Q Consensus 789 ~s~hK~l~ 796 (985)
.|+||+++
T Consensus 206 ~S~tK~lg 213 (431)
T PRK08248 206 HSATKFIG 213 (431)
T ss_pred EcCccccC
Confidence 99999995
No 393
>PRK07050 cystathionine beta-lyase; Provisional
Probab=99.60 E-value=3.6e-14 Score=163.90 Aligned_cols=210 Identities=18% Similarity=0.065 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~vv~v~~ 709 (985)
.+++++.++++.|.+.+ +..+||+.|+..+++++. ++||+||+++..|+.+.. .+...|++++.++.
T Consensus 67 ~~~Le~~lA~l~g~~~~-l~~~sgt~Ai~~~l~al~--------~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~ 137 (394)
T PRK07050 67 SLALAQRLAEIEGGRHA-LLQPSGLAAISLVYFGLV--------KAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYDP 137 (394)
T ss_pred HHHHHHHHHHHhCCCeE-EEeccHHHHHHHHHHHHh--------CCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEECC
Confidence 45788999999997653 455778877755554442 478999999887876542 35678999998875
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
. |.++++++++ ++|++|++++|+ .+|... |+++|+++||++|+++++|+++.. +.+..|.++|+|+++
T Consensus 138 ~-----~~~~l~~~i~---~~tklV~le~p~Np~~~~~-di~~I~~ia~~~gi~livD~a~a~--~~~~~~l~~GaDi~v 206 (394)
T PRK07050 138 L-----IGAGIADLIQ---PNTRLIWLEAPGSVTMEVP-DVPAITAAARARGVVTAIDNTYSA--GLAFKPFEHGVDISV 206 (394)
T ss_pred C-----CHHHHHHhcC---CCCeEEEEECCCCCCccHh-hHHHHHHHHHHcCCEEEEECCccc--ccccCHHHcCCeEEE
Confidence 3 5678999887 889999999984 688887 899999999999999999999853 334567788999999
Q ss_pred eCCcccccccCCCCCCceEEEEE-cccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~-~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.|++|+++. .++..+|.+++ ++++.+.+... + ..++...+ + ..+|..+ -|.+.
T Consensus 207 ~S~tK~~~g---~~~~~gG~v~~~~~~~~~~~~~~------------~-~~~G~~~~-----~---~~a~l~l--r~l~t 260 (394)
T PRK07050 207 QALTKYQSG---GSDVLMGATITADAELHAKLKLA------------R-MRLGIGVS-----A---DDCSLVL--RGLPS 260 (394)
T ss_pred EECCceecC---CCCeeEEEEEECCHHHHHHHHHH------------H-HhcCCCCC-----H---HHHHHHH--cCCCc
Confidence 999999952 12222555555 45554433210 0 00111111 1 1233333 34445
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 001989 868 LTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g 889 (985)
+..+.++..+++..+.+.|++.
T Consensus 261 l~~Rl~~~~~~a~~la~~L~~~ 282 (394)
T PRK07050 261 LQVRLAAHDRSALEVAEWLKAR 282 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 6667778888899999999863
No 394
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=99.60 E-value=8.7e-14 Score=160.79 Aligned_cols=209 Identities=15% Similarity=0.108 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~vv~v~~ 709 (985)
.++++++++++.|.+.+ +.+++|.+|+..++.++. .++|+||++...|+.... .+...|++++.++.
T Consensus 66 ~~~le~~lA~l~g~~~~-i~~ssG~~Ai~~~l~all--------~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~ 136 (398)
T PRK08249 66 VQAFEEKVRILEGAEAA-TAFSTGMAAISNTLYTFL--------KPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCET 136 (398)
T ss_pred HHHHHHHHHHHhCCCeE-EEeCChHHHHHHHHHHhc--------CCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCC
Confidence 56889999999998764 566778776654444331 368899998876664322 24467999887774
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
.|+++++++|+ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++.... ...|..+++|+++
T Consensus 137 -----~d~e~l~~~i~---~~tklV~ie~p~NPtg~v~-dl~~I~~la~~~gi~livD~t~a~~~--~~~~l~~~~Divv 205 (398)
T PRK08249 137 -----GDHEQIEAEIA---KGCDLLYLETPTNPTLKIV-DIERLAAAAKKVGALVVVDNTFATPI--NQNPLALGADLVI 205 (398)
T ss_pred -----CCHHHHHHhcC---CCCeEEEEECCCCCCCccC-CHHHHHHHHHHcCCEEEEECCcCccc--cCCchhhCCCEEe
Confidence 58999999997 78999999998 5799998 89999999999999999999975322 2345567899999
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
.|++|+++.+ |.-.+|+++.++++.+.+... + ...+...+ + ..+|..+ -+.+.+
T Consensus 206 ~S~sK~l~g~---~~~~gG~vv~~~~l~~~l~~~------------~-~~~g~~~s-----~---~~a~l~l--~~l~tL 259 (398)
T PRK08249 206 HSATKFLSGH---ADALGGVVCGSKELMEQVYHY------------R-EINGATMD-----P---MSAYLIL--RGMKTL 259 (398)
T ss_pred ccCceecCCC---CCceEEEEECCHHHHHHHHHH------------H-HhcCCCCC-----H---HHHHHHH--hCcchH
Confidence 9999998421 111247777666655443210 0 00111111 1 1223333 344556
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 001989 869 TEASKIAILNANYMAKRLEK 888 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~ 888 (985)
..+.++..+++..+.+.|++
T Consensus 260 ~~R~~~~~~na~~la~~L~~ 279 (398)
T PRK08249 260 KLRVRQQQESAMALAKYLQT 279 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 66777888999999999986
No 395
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=99.60 E-value=3.3e-13 Score=157.09 Aligned_cols=298 Identities=12% Similarity=0.072 Sum_probs=174.8
Q ss_pred HHHHHHHHHhCC------Cccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 636 NLGEWLCTITGF------DSFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 636 e~~~~la~l~G~------~~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
++++.+++++|. +...+ ..+++++|.. ++++.+. .++++|+++++.+..+...++..|++++.++
T Consensus 77 ~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~---~~~~~l~-----~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~ 148 (403)
T TIGR01265 77 AAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIE---ICIEALA-----NPGANILVPRPGFPLYDTRAAFSGLEVRLYD 148 (403)
T ss_pred HHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHH---HHHHHhC-----CCCCEEEEeCCCchhHHHHHHHcCCEEEEec
Confidence 455666666653 23334 4445555553 3333321 3678999998877666666788999999998
Q ss_pred CCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cC--CCCCC
Q 001989 709 TDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VG--LTSPG 780 (985)
Q Consensus 709 ~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~--l~~pg 780 (985)
.++ ++.+|+++++++++ +++++|++++| |++|.+.+ ++++|.++|+++|+++++|+++..-. .+ +....
T Consensus 149 ~~~~~~~~~d~~~l~~~~~---~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~ 225 (403)
T TIGR01265 149 LLPEKDWEIDLDGLEALAD---EKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMA 225 (403)
T ss_pred CCcccCCccCHHHHHHHhC---cCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchh
Confidence 753 46799999999987 78899999998 57998851 48999999999999999999874211 11 00111
Q ss_pred ccC--Cc-EEEeCCcccccccCCCCCCceEEEEEcc--cc-----cCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhh
Q 001989 781 YIG--AD-VCHLNLHKTFCIPHGGGGPGMGPIGVKK--HL-----APFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 781 ~~g--~D-i~~~s~hK~l~~p~g~GGPg~G~i~~~~--~l-----~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~ 850 (985)
.+. .. +++.|+.|+|+.| |.++|++++.. .+ ...+.... . ...+.+ ...+
T Consensus 226 ~~~~~~~vi~~~S~SK~~~~p----GlRiG~~v~~~~~~~~~~~~~~~~~~~~------------~-~~~~~~--~~~q- 285 (403)
T TIGR01265 226 SFASIVPVLSLGGISKRWVVP----GWRLGWIIIHDPHGIFRDTVLQGLKNLL------------Q-RILGPA--TIVQ- 285 (403)
T ss_pred hhccCCcEEEEeecccccCCC----cceEEEEEEeCchhhhHHHHHHHHHHHh------------h-hhcCCC--hHHH-
Confidence 111 12 5567888987654 67899998742 21 11111000 0 000111 0111
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH-HH
Q 001989 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL-MD 929 (985)
Q Consensus 851 ~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L-~~ 929 (985)
.++..++......-+++..++..++++++.+.|+...++.+..+.+..+ +.++++........+..++++.| .+
T Consensus 286 ---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~f--~~~~~~~~~~~~~~~~~~~~~~l~~~ 360 (403)
T TIGR01265 286 ---GALPDILENTPQEFFDGKISVLKSNAELCYEELKDIPGLVCPKPEGAMY--LMVKLELELFPEIKDDVDFCEKLVRE 360 (403)
T ss_pred ---HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCceeE--EEEeccccccCCCCCHHHHHHHHHHh
Confidence 1112233321223344445566777888888887621222212222222 33454310000012567888886 56
Q ss_pred CCCccCC-CCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 930 YGFHGPT-MSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 930 ~Gi~~~~-~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+|+.+.. ..|...+++||++.. .++.+++ .++.|.+++++
T Consensus 361 ~gv~v~pg~~f~~~~~iRis~~~--~~~~l~~--~l~~l~~~~~~ 401 (403)
T TIGR01265 361 ESVICLPGSAFGLPNWVRITITV--PESMLEE--ACSRIKEFCER 401 (403)
T ss_pred CCEEEeCccccCCCCeEEEEecC--CHHHHHH--HHHHHHHHHHh
Confidence 7998643 223346899999973 4778888 66777776654
No 396
>PRK06148 hypothetical protein; Provisional
Probab=99.60 E-value=1e-13 Score=176.78 Aligned_cols=341 Identities=17% Similarity=0.197 Sum_probs=207.2
Q ss_pred HHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-c
Q 001989 571 HELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-S 649 (985)
Q Consensus 571 ~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~ 649 (985)
.+..+|++.+.+ ...||++++.+..+...+..... +.+.++. +...++.+.|++++..+ .
T Consensus 621 ~dG~~ylD~~~g--------~~~lGH~hp~v~~Ai~~q~~~l~-~~~~~~~----------~~~~~lAe~L~~~~p~~~~ 681 (1013)
T PRK06148 621 NRGRAYLDCFNN--------VCHVGHAHPRVVAAAARQAARLN-TNTRYLH----------DAIVAYAERLTATLPDGLT 681 (1013)
T ss_pred CCCCEEEEcccC--------hhhcCCCCHHHHHHHHHHHhhcC-CcCCcCC----------HHHHHHHHHHHHhCCCCcC
Confidence 444556655432 24589998888776655542211 1111111 12347788888887532 2
Q ss_pred cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC------------cEEEEEcCCCC--CC
Q 001989 650 FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG------------MKIVSVGTDAK--GN 714 (985)
Q Consensus 650 ~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G------------~~vv~v~~d~~--g~ 714 (985)
..++.+||++|++++++.+|.| +++.+||+ ...+||....+....+ -.+..++.... +.
T Consensus 682 ~v~f~nSGsEA~e~AlklAr~~------tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 755 (1013)
T PRK06148 682 VAFFVNSGSEANSLALRLARAH------TGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGP 755 (1013)
T ss_pred EEEEeCCcHHHHHHHHHHHHHh------cCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccC
Confidence 3577899999999999999876 23455665 6789997654332111 11222221100 00
Q ss_pred ---CC-------HHHHHHHHH---hcCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCC
Q 001989 715 ---IN-------IEELRKAAE---ANRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLT 777 (985)
Q Consensus 715 ---iD-------~e~L~~~i~---~~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~ 777 (985)
.| .+++++.++ .+.+++++|+++-. ..-|++.+ -+++|.++|+++|+++|+|+++ .|++
T Consensus 756 ~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVq----tGfG 831 (1013)
T PRK06148 756 ERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQ----VGFG 831 (1013)
T ss_pred CCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecc----cCCC
Confidence 11 245666554 22356888888753 34566652 2899999999999999999886 3444
Q ss_pred CCCc-c--------CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 778 SPGY-I--------GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 778 ~pg~-~--------g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
+.|. + -+|+++++ |.+ ++|-| +|.+++++++.+.+.... ...+++.|
T Consensus 832 RtG~~~~a~e~~gv~PDivt~g--K~l----ggG~P-lgav~~~~ei~~~~~~g~-----------------~~~~Tf~g 887 (1013)
T PRK06148 832 RVGSHWWAFETQGVVPDIVTMG--KPI----GNGHP-MGAVVTTREIADSFDNGM-----------------EYFNTFGG 887 (1013)
T ss_pred CCCCcchhhhhcCCCcceeeec--ccc----cCCcc-eEEEEEcHHHHhhccCCC-----------------ccccCCCC
Confidence 4543 1 27998763 766 44445 666667877765442110 01134667
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecC---ccccCCCCH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRG---LKNTAGIEP 920 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~---~~~~~g~~~ 920 (985)
+++.++++.+.|..+..+++. ++..+..++|+++|++. ++++ +.+. + .+ +-+.+.. .+.......
T Consensus 888 npla~aaa~a~L~~i~~e~l~---~~~~~~G~~l~~~L~~l~~~~~~i~~VrG~-G-l~--~gvel~~~~~~~~~~~~~~ 960 (1013)
T PRK06148 888 NPVSCAIGLAVLDIIEDEDLQ---RNALEIGNYLLAGLRELQDRFDIIGDVRGM-G-LF--LGIELVTDRKTKAPATAIA 960 (1013)
T ss_pred CHHHHHHHHHHHHHHhhccHH---HHHHHHHHHHHHHHHHHHHhCCCceEEeee-c-eE--EEEEecCCccccCccHHHH
Confidence 888888899999998777654 45667788888888752 2321 1121 1 12 1222210 000000013
Q ss_pred HHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 921 EDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 921 ~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
..+.+.|.++|+++.... |..+.+||.|+..+|++|||+ ++++|++++.++
T Consensus 961 ~~i~~~~~~~Gvl~~~~g-~~~~vlr~~Ppl~it~~~id~--~l~~l~~~l~~~ 1011 (1013)
T PRK06148 961 RYVKNGARERGILIGTEG-PHDNVLKIRPPLIFSRADADH--LLEVLDDVLAAA 1011 (1013)
T ss_pred HHHHHHHHhCCeEEeccC-CCCCEEEEeCCccCCHHHHHH--HHHHHHHHHHHH
Confidence 467888899999986543 224899999999999999999 889999988764
No 397
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=99.60 E-value=1.1e-13 Score=162.42 Aligned_cols=252 Identities=13% Similarity=0.102 Sum_probs=163.7
Q ss_pred CCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEE-cC-CCccccccCH---HHH
Q 001989 678 HHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVT-YP-STHGVYEEGI---DEI 752 (985)
Q Consensus 678 ~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~-~p-n~~G~i~~di---~eI 752 (985)
.+||.|+++++.++.+...++..|++++.+|++++| +|+++|+++++ +++++++++ +| |++|.+. +. ++|
T Consensus 163 ~pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g-~~~~~l~~~~~---~~~k~i~~~p~p~NPTG~~~-s~~~~~~l 237 (431)
T PRK15481 163 LPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDAEG-MQPEKLERALA---QGARAVILTPRAHNPTGCSL-SARRAAAL 237 (431)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHcCCeEEeeccCCCC-CCHHHHHHHHh---cCCCEEEECCCCCCCCCccC-CHHHHHHH
Confidence 478999999988877777889999999999997665 89999999997 578888887 78 5799997 44 499
Q ss_pred HHHHHHc-CCEEEEEccccccc-cCCCCC--CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCC
Q 001989 753 CKIIHDN-GGQVYMDGANMNAQ-VGLTSP--GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTG 828 (985)
Q Consensus 753 ~~la~~~-galliVD~a~~~~~-~~l~~p--g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~ 828 (985)
.++|+++ ++++++|.++..-. .....+ ....--+++.|+.|+|+ | |.++|++++++++...+....
T Consensus 238 ~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~-~----GlRiG~~i~~~~~~~~~~~~~----- 307 (431)
T PRK15481 238 RNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQRWALIRSVSKALG-P----DLRLAFVASDSATSARLRLRL----- 307 (431)
T ss_pred HHHHHhcCCceEEecCchhhhccCCCCCCCcCCCCCEEEEeeeccccC-C----CceeEEEeCCHHHHHHHHHHH-----
Confidence 9999999 99999999873211 011111 11122367788889886 4 678999998876654432100
Q ss_pred CCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH--HHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEE
Q 001989 829 GIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS--KGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEF 905 (985)
Q Consensus 829 ~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~--eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~ 905 (985)
.....+++ .....++..+|.. +. +-+++..+...++.+++.+.|++ ++.+.. +.+..+ +
T Consensus 308 -------~~~~~~~s------~~~q~a~~~~l~~-~~~~~~l~~~~~~~~~~r~~~~~~L~~~~~~~~~--p~gg~f--~ 369 (431)
T PRK15481 308 -------NSGTQWVS------HLLQDLVYACLTD-PEYQARLAQARLFYAQRRQKLARALQQYGIAIPS--PGDGLN--L 369 (431)
T ss_pred -------hccccCCC------HHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc--CCCeEE--E
Confidence 00011111 1111122233321 21 12444555667778888888876 443322 223332 3
Q ss_pred EEEecCccccCCCCHHHHHHHHHHCCCccCC-CCCCC---CCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 906 IVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT-MSWPV---PGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 906 iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~-~~~p~---~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.++++ .+..++++.|.++||.+.. ..|.. .+++||++.. .+++++++ +++.|.+++.
T Consensus 370 ~~~l~-------~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~-~~~~~i~~--~~~~l~~~~~ 430 (431)
T PRK15481 370 WLPLD-------TDSQATALTLAKSGWLVREGEAFGVSAPSHGLRITLST-LNDAEINR--LAADLHQALN 430 (431)
T ss_pred EEECC-------CCHHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCC-CChHHHHH--HHHHHHHHhc
Confidence 45553 1467899999999998754 22321 3689999976 35899999 7777777664
No 398
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=99.60 E-value=1.9e-13 Score=160.78 Aligned_cols=282 Identities=12% Similarity=0.009 Sum_probs=176.7
Q ss_pred HHHHHHhcCCCCcceee---ccchHHHHHHHHHHhhhhcCCCCEEEEcC------CCChhHHHHHHHhhcCCCeEE----
Q 001989 217 QTMIADLTGLPMSNASL---LDEGTAAAEAMAMCNNIQKGKKKTFIIAS------NCHPQTIDICITRADGFDIKV---- 283 (985)
Q Consensus 217 q~~ia~L~g~~~~~~sl---~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~------~~H~s~~~~~~~~a~~~gi~v---- 283 (985)
++..++++|.+.+...+ ..+|+.+..++++++. ++||+|++.+ ..|.+.....+- ...+..+
T Consensus 86 ~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL~---~pgD~Il~~d~~~gGhl~H~~~~~g~~~--s~~~~~~~~~~ 160 (475)
T PLN03226 86 QKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTALL---QPHDRIMGLDLPHGGHLSHGYQTDGKKI--SATSIYFESMP 160 (475)
T ss_pred HHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHhC---CCCCEEEECCCCcCcchhhhhhhccccc--ccceEEEEeee
Confidence 34678888887744322 2567777888887762 3899999854 344444333211 1122221
Q ss_pred -EE------eCchhhhc-cC-CCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCC-----CCcccc
Q 001989 284 -VV------SDLKDIDY-KS-GDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP-----PGELGA 349 (985)
Q Consensus 284 -~~------v~~~~l~~-l~-~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~-----~~~~Ga 349 (985)
.+ +|+++|++ +. .+++.|++.. +.+|...|+++|.++||++|++++||+ .++.|++.. |- .++
T Consensus 161 y~~~~~~g~iD~d~Le~~l~~~~pklIv~~~-S~~s~~~D~a~i~~ia~~~ga~LlvD~-AH~~Gli~~~~~~~p~-~~~ 237 (475)
T PLN03226 161 YRLDESTGLIDYDKLEKKAMLFRPKLIIAGA-SAYPRDWDYARMRKIADKVGALLMCDM-AHISGLVAAQEAASPF-EYC 237 (475)
T ss_pred eeecCCCCCcCHHHHHHHHhhcCCeEEEEec-CcCCCccCHHHHHHHHHHcCCEEEEEc-hhhhCcccCCCCCCCC-CCC
Confidence 11 25567776 53 3566555543 457888899999999999999999942 445555432 22 279
Q ss_pred eEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccccccccc--ccccCCCccchhHH
Q 001989 350 DIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIR--RDKATSNICTAQAL 426 (985)
Q Consensus 350 Di~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~ir--re~atsni~t~~~l 426 (985)
|++++++ |+|++|. .|+++++++..+.+.+. .|...+ |.... +..+ ...++++ +...
T Consensus 238 Div~~t~hK~L~GP~------Gg~I~~~~~~~~~~~~g-~~~~~d------~~~~i----~~a~~~~~~g~p~---~~~i 297 (475)
T PLN03226 238 DVVTTTTHKSLRGPR------GGMIFFRKGPKPPKGQG-EGAVYD------YEDKI----NFAVFPGLQGGPH---NHTI 297 (475)
T ss_pred eEEEecCcccccCCC------ceEEEEchhhcccccCC-CccHHH------HHHHh----ccccCCccCCCch---HHHH
Confidence 9999998 7786553 37889888765443221 110000 10000 0011 0122222 2445
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-CCcceEEEec--CC--HHHHHHHHHHcCceeee
Q 001989 427 LANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKC--AD--AHAIASAAYKIEMNLRV 501 (985)
Q Consensus 427 ~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~~~~--~~--~~~v~~~L~~~GI~~~~ 501 (985)
.++.+++ .++...|.++++++..+++++|++.|.+.| ++++.. ..-+.+.|.+ .+ ..++.+.|.+.||.+..
T Consensus 298 aal~aAl--~~i~~~~~~~~~~~~~~na~~L~~~L~~~G-~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk 374 (475)
T PLN03226 298 AALAVAL--KQAMTPEFKAYQKQVKANAAALANRLMSKG-YKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNK 374 (475)
T ss_pred HHHHHHH--HHHhCcCHHHHHHHHHHHHHHHHHHHHhCC-CEEEcCCCCCCEEEEEccCCCCCHHHHHHHHHHCCCEECC
Confidence 5555554 566667889999999999999999999987 998853 2223444444 23 77889999999997642
Q ss_pred ---------ecCCeEEE----EeccCCCHHHHHHHHHHHhC
Q 001989 502 ---------VDSNTVTA----SFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ---------~~~~~lri----s~t~~~t~edId~li~aL~~ 529 (985)
+.+..+|+ -.+...+++|++++++.|..
T Consensus 375 ~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~ 415 (475)
T PLN03226 375 NAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHR 415 (475)
T ss_pred CCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHH
Confidence 23567888 45566788999999998864
No 399
>PRK07908 hypothetical protein; Provisional
Probab=99.60 E-value=1.1e-13 Score=158.10 Aligned_cols=277 Identities=16% Similarity=0.120 Sum_probs=170.8
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++++++.+|.+...+..++|++ +. ..+++ + .++ ++++..+.+..+...++..|++++.+|.+.++
T Consensus 61 ~~lr~aia~~~~~~~~~I~it~Ga~~al---~~~~~-l------~~~-~viv~~P~y~~~~~~~~~~G~~i~~v~~~~~~ 129 (349)
T PRK07908 61 RRARAAVAARHGRTPDEVLLLAGAAEGF---ALLAR-L------RPR-RAAVVHPSFTEPEAALRAAGIPVHRVVLDPPF 129 (349)
T ss_pred HHHHHHHHHHhCcChhhEEECCCHHHHH---HHHHh-c------CCC-eEEEeCCCChHHHHHHHHcCCEEEeeccCccc
Confidence 4677888899998876666555554 43 22232 2 243 46665554444455567899999999998767
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccC-CCCCCccC-Cc-EEEe
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG-LTSPGYIG-AD-VCHL 789 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~-l~~pg~~g-~D-i~~~ 789 (985)
.+|++++ + ++++++++++| |++|.+. +.++|.++|++ +.++++|+++..-..+ ........ .+ +++.
T Consensus 130 ~~d~~~l----~---~~~~~i~l~np~NPTG~~~-~~~~l~~l~~~-~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~ 200 (349)
T PRK07908 130 RLDPAAV----P---DDADLVVIGNPTNPTSVLH-PAEQLLALRRP-GRILVVDEAFADAVPGEPESLAGDDLPGVLVLR 200 (349)
T ss_pred CcChhHh----c---cCCCEEEEcCCCCCCCCCc-CHHHHHHHHhc-CCEEEEECcchhhccCCccccccccCCCEEEEe
Confidence 8888754 3 56788999998 4799998 79999999974 8899999987421111 11111111 23 4556
Q ss_pred CCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHH
Q 001989 790 NLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 790 s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~ 869 (985)
|++|+|++| |.++|++++++++.+.+.... ...++++ ....++.+++.....+-++
T Consensus 201 S~SK~~~l~----GlRiG~~~~~~~~~~~~~~~~--------------~~~~~~~------~~~~a~~~~~~~~~~~~~~ 256 (349)
T PRK07908 201 SLTKTWSLA----GLRVGYALGAPDVLARLTRGR--------------AHWPVGT------LQLEAIAACCAPRAVAEAA 256 (349)
T ss_pred ecccccCCc----cceeeeeecCHHHHHHHHhcC--------------CCCCccH------HHHHHHHHHhcccchHHHH
Confidence 889988654 788999999877665442110 0011111 1111111222211223345
Q ss_pred HHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-CCC--CCCEEE
Q 001989 870 EASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-SWP--VPGTLM 946 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~p--~~~~lr 946 (985)
+..++..++++++.+.|++. ++.+..+.+..+ +.++++ +...+.+.|.++||.+... .|+ .++++|
T Consensus 257 ~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~~--~~~~~~--------~~~~~~~~l~~~gI~v~~g~~f~~~~~~~vR 325 (349)
T PRK07908 257 ADAARLAADRAEMVAGLRAV-GARVVDPAAAPF--VLVRVP--------DAELLRKRLRERGIAVRRGDTFPGLDPDYLR 325 (349)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CcEeccCCCceE--EEEECC--------cHHHHHHHHHhCCEEEEECCCCCCCCCCeEE
Confidence 55566777888898999762 332222222222 344543 2578888999999987532 232 258999
Q ss_pred EeccCCCCHHHHHHHHccCChhHHH
Q 001989 947 IEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 947 is~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
|++ .+.+|+++ +++.|++++
T Consensus 326 is~---~~~~~~~~--l~~al~~~~ 345 (349)
T PRK07908 326 LAV---RPRAEVPV--LVQALAEIL 345 (349)
T ss_pred EEe---CCCccHHH--HHHHHHHHH
Confidence 999 68889999 777777654
No 400
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=99.60 E-value=1.1e-13 Score=161.47 Aligned_cols=325 Identities=13% Similarity=0.075 Sum_probs=188.7
Q ss_pred ccccccccCCCcccccc-ccc-cccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC-ccceecCcHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMM-PVT-WPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD-SFSLQPNAGAAGEYAGLMVI 668 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~-~~~-~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~-~~~~~~~sGa~a~~a~l~ai 668 (985)
..||++++.+..+...+ ... ...... ++. ....++.+++.+.+++++.-+ ...++.+||++|++++++.+
T Consensus 70 ~~lGh~~p~i~~Ai~~q~~~~~l~~~~~-~~~------~~~~~la~~l~~~l~~~~p~~~~~v~f~~SGsEAvE~AlKlA 142 (464)
T TIGR00699 70 IPIGYNNPALLKAAQSPEMATTLINRPA-LGN------FPSKDWAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAA 142 (464)
T ss_pred hcCCCCCHHHHHHHHHHHHHHhhccccc-CCc------HHHHHHHHHHHHhHHhhCCCCcCEEEEeCCcHHHHHHHHHHH
Confidence 45788877777765542 111 111111 111 111223333334345565321 23577799999999999999
Q ss_pred HHHHHhcCC-------------------C--CCCEEEE-cCCCCcccHHHHHHCCc-----------EEEEEcCCCC---
Q 001989 669 RAYHKARGD-------------------H--HRNVCII-PVSAHGTNPATAAMCGM-----------KIVSVGTDAK--- 712 (985)
Q Consensus 669 r~~~~~~g~-------------------~--~~~~IIv-~~~~Hg~~~~~a~~~G~-----------~vv~v~~d~~--- 712 (985)
|.|...++. + ++.+||. ..++||....+....|- .+..+|....
T Consensus 143 r~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~~~~~ 222 (464)
T TIGR00699 143 FMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYP 222 (464)
T ss_pred HHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCceecCCCCcccc
Confidence 887532210 0 1235665 67899987765443221 1223332210
Q ss_pred -----------CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCC
Q 001989 713 -----------GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGL 776 (985)
Q Consensus 713 -----------g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l 776 (985)
...++++++++++++.+++++|+++-. ...|++. + +++|.++|+++|+++|+|+++ .|+
T Consensus 223 ~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~-~~~~yl~~lr~lc~~~g~lLI~DEV~----tGf 297 (464)
T TIGR00699 223 LEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNH-ASPDFFRKLRDITKKHNVAFIVDEVQ----TGV 297 (464)
T ss_pred cccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEeeee----eCC
Confidence 012467788888765567999998753 3457665 5 999999999999999999887 233
Q ss_pred CCCCcc------C----CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcc
Q 001989 777 TSPGYI------G----ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAP 846 (985)
Q Consensus 777 ~~pg~~------g----~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~ 846 (985)
.+.|.+ | +|+++++ |.++ +| |++..++.+...-+ ....+++
T Consensus 298 GrtG~~fa~e~~gv~~~PDi~t~g--K~lg----~g----G~~~~~~~~~~~~~-------------------~~~~~T~ 348 (464)
T TIGR00699 298 GATGKFWAHEHWNLDDPPDMVTFS--KKFQ----TA----GYFFHDPAFRPNKP-------------------YRQFNTW 348 (464)
T ss_pred CCCcchhHHHhcCCCCCCCEEEeh--hhhc----cC----CccccchhccCCCC-------------------cccccCC
Confidence 444432 2 8998763 7762 12 23322221110000 0112345
Q ss_pred hhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CC-eeecCCCCceeeEEEEEecCccccCCCCHHH
Q 001989 847 WGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YP-ILFRGVNGTVAHEFIVDLRGLKNTAGIEPED 922 (985)
Q Consensus 847 ~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~-l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~ 922 (985)
.|++..++++.+.|..+..+++. ++..+..++|.++|++. +. ++-..........+.+.++. ......
T Consensus 349 ~gnp~~~aaa~a~L~~l~~~~l~---~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~-----~~~~~~ 420 (464)
T TIGR00699 349 MGDPSRALILREIIQEIKRKDLL---ENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPD-----EAKRDK 420 (464)
T ss_pred CCCHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCC-----HHHHHH
Confidence 66777888888888888766544 35566677888888652 33 21110000111112333320 112567
Q ss_pred HHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 923 VAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 923 v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
+.+.+.++|+++.... .+.|||+|+..+|++|||. ++++|+++
T Consensus 421 i~~~~~~~Gvl~~~~g---~~~ir~~Ppl~it~~eid~--~~~~l~~~ 463 (464)
T TIGR00699 421 LLKKARNNGVNIGGCG---VKAIRLRPMLVFQKHHADI--FLEIISKI 463 (464)
T ss_pred HHHHHHHCCcEEecCC---CCeEEEeCCCCCCHHHHHH--HHHHHHHh
Confidence 8889999999985442 3789999999999999999 66777664
No 401
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.60 E-value=2.2e-14 Score=164.39 Aligned_cols=210 Identities=17% Similarity=0.126 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
..++++.++++.|.+.+ +.++||+.|+.+++.++. +++|+||+++..++..... .+..|+++..++.
T Consensus 52 ~~~lE~~lA~l~g~~~~-~~~~sG~~Ai~~al~all--------~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~ 122 (377)
T TIGR01324 52 HFALQDAMCELEGGAGC-YLYPSGLAAVTNSILAFV--------KAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDP 122 (377)
T ss_pred HHHHHHHHHHHhCCCcE-EEECcHHHHHHHHHHHhc--------CCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECC
Confidence 34788999999998764 445678777755554432 4789999987655433322 3457888888765
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ +.++++++++ ++|++|++++| |.+|.+. |+++|+++||++|++++||++|..+ .+..|.++|+|+++
T Consensus 123 ~-----~~e~l~~~i~---~~tklV~lesp~Np~g~~~-dl~~I~~la~~~g~~livD~t~a~g--~~~~pl~~gaDivv 191 (377)
T TIGR01324 123 L-----IGEDIATLIQ---PNTKVLFLEAPSSITFEIQ-DIPAIAKAARNPGIVIMIDNTWAAG--LLFKPLEHGVDISI 191 (377)
T ss_pred C-----CHHHHHHhcC---CCceEEEEECCCCCCCcHH-HHHHHHHHHHHcCCEEEEECCCccc--cccCccccCceEEE
Confidence 3 3388999887 88999999998 5688887 8999999999999999999998643 34568889999999
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
.|+||+++.+ ++-.+|+++.+++....+.... ...+...+ ...+|..++ |.+-+
T Consensus 192 ~S~tK~l~G~---~d~~gG~v~~~~~~~~~l~~~~-------------~~~G~~l~--------p~~a~~~~r--gl~tl 245 (377)
T TIGR01324 192 QAGTKYLVGH---SDIMIGTVVANARTWDQLREHS-------------YLMGQMVD--------ADDAYTTLR--GLRTL 245 (377)
T ss_pred ecCceeccCC---CCceEEEEEeCHHHHHHHHHHH-------------HHhCCCCC--------HHHHHHHHh--hhhhH
Confidence 9999999522 2234688888765543321100 00111111 122444444 33455
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 001989 869 TEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g 889 (985)
..+.++..+++..+++.|++.
T Consensus 246 ~~R~~~~~~~a~~la~~L~~~ 266 (377)
T TIGR01324 246 GVRLKQHQESSLAIAKWLSEQ 266 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 566788899999999999863
No 402
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.60 E-value=1.1e-13 Score=160.96 Aligned_cols=235 Identities=19% Similarity=0.160 Sum_probs=154.4
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|++.|.+. +.++.+|++++.+++.++. ++||+||++...|+.....+....+..|+++.+++. ++
T Consensus 61 ~~Le~~lA~l~g~~~--~l~~ssG~~Ai~~al~al~---~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~~d~e~ 135 (425)
T PRK06084 61 DVLEQRVAALEGGVG--ALAVASGMAAITYAIQTIA---EAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAHDDIAA 135 (425)
T ss_pred HHHHHHHHHHhCCCc--eeEehhHHHHHHHHHHHHh---CCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECCCCHHH
Confidence 357799999999764 6678899988887776652 378999999999887777776555567889888754 56
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|.++|+||++.|+ |++++| |.
T Consensus 136 le~ai~~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD-~a~a~~~~~~p~~~gaDivv~S~tK~l~G~---g~ 211 (425)
T PRK06084 136 LEALIDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVD-NTVATPVLCRPFEHGADIVVHSLTKYIGGH---GT 211 (425)
T ss_pred HHHHhccCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEE-CCCcccccCChhhcCCCEEEECchhccccc---cc
Confidence 666 7888999999988 89999999999999999999999994 45666666677789999999998 877653 22
Q ss_pred CcEEEEEEchhhH-hcCCCceeeeeecCCCCcceeeecccccccc-------cc---cccCCCccchhHHHHHHHHHHHH
Q 001989 368 PHAAFLATSQEYK-RMMPGRIVGVSIDSSGKPALRVAMQTREQHI-------RR---DKATSNICTAQALLANMAAMYAV 436 (985)
Q Consensus 368 P~~G~l~~~~~~~-~~lp~~~vG~t~d~~g~~~~~l~l~tre~~i-------rr---e~atsni~t~~~l~a~~aa~~l~ 436 (985)
.-+|++..+.... ..+..+ .++-...+... +.+.+ .+.+. +| ..+. +. .+...-| |+.
T Consensus 212 ~~gG~v~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~--~~~~g~~~~~~~~~~~~~~~~-g~----~l~~~~a--~l~ 280 (425)
T PRK06084 212 SIGGIVVDSGKFPWAEHKER-FALLNTPDPSY-HGVTY--TEAFGPAAFIGRCRVVPLRNM-GA----ALSPFNA--FLI 280 (425)
T ss_pred ceeEEEEeCCccchhhcccc-ccccccCCccc-ccchh--hhhcchHHHHHHHHHHHHHhc-CC----CCCHHHH--HHH
Confidence 2345555433211 111001 01000000000 11100 00000 00 0111 11 0111122 345
Q ss_pred HhCcchHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 001989 437 YHGPEGLKTIAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 437 ~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
+.|-+.+..+.++..+++..+++.|++.+.++
T Consensus 281 lrgl~tl~~R~~~~~~na~~la~~L~~~p~v~ 312 (425)
T PRK06084 281 LQGLETLALRMERHTENALKVARYLQQHPQVA 312 (425)
T ss_pred HcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 66777788888899999999999999985454
No 403
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.60 E-value=3.5e-13 Score=157.22 Aligned_cols=154 Identities=18% Similarity=0.189 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~vv~v~~ 709 (985)
..++++.++++.|.+. .+.++||++|+.+++.++. +++++||++...|+.... .+...|++++.++.
T Consensus 65 ~~~le~~lA~l~g~~~-al~~~SG~~Ai~~al~all--------~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 135 (427)
T PRK05994 65 NAVLEERVAALEGGTA-ALAVASGHAAQFLVFHTLL--------QPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADA 135 (427)
T ss_pred HHHHHHHHHHHhCCCc-EEEEcCHHHHHHHHHHHHh--------CCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECC
Confidence 3478899999999876 4667888888865555432 377899998776664332 24568999999886
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++..+. ...|-++|+|+++
T Consensus 136 ~-----d~~~l~~ai~---~~tklV~vesp~NptG~v~-dl~~I~~la~~~gi~livD~a~a~~~--~~~pl~~gaDivv 204 (427)
T PRK05994 136 D-----DPASFERAIT---PRTKAIFIESIANPGGTVT-DIAAIAEVAHRAGLPLIVDNTLASPY--LIRPIEHGADIVV 204 (427)
T ss_pred C-----CHHHHHHhcC---cCCeEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCccccc--cCCccccCCcEEE
Confidence 3 8999999997 78999999998 5799988 89999999999999999999985333 3466778999999
Q ss_pred eCCcccccccCCCCCCceEEEE
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIG 810 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~ 810 (985)
.|+||+++.+ |++-+|+++
T Consensus 205 ~S~tK~lgg~---~~~~gG~v~ 223 (427)
T PRK05994 205 HSLTKFLGGH---GNSMGGIIV 223 (427)
T ss_pred EcCccccCCC---CCcEEEEEE
Confidence 9999998532 334455555
No 404
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=99.60 E-value=1.8e-13 Score=158.46 Aligned_cols=210 Identities=18% Similarity=0.187 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCccc----HHHHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN----PATAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~----~~~a~~~G~~vv~v~~ 709 (985)
..++++.++++.|.+. .+.+++|++|+..++. .+. .++|+|+++...|+.. ...+...|++++.++.
T Consensus 62 ~~~Le~~lA~l~g~~~-~v~~~sG~~Ai~~~l~---all-----~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~ 132 (405)
T PRK08776 62 RDLLGEALAELEGGAG-GVITATGMGAINLVLN---ALL-----QPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADL 132 (405)
T ss_pred HHHHHHHHHHHhCCCc-eEEEcCHHHHHHHHHH---HHh-----CCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECC
Confidence 4578899999999764 4566677766533333 322 4788999987655542 2224567888888875
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
.|+++|+++++ ++|++|++++| |++|.+. |+++|+++|+++|+++++|+++.. +....|..+|+|+++
T Consensus 133 -----~d~~~l~~~i~---~~tklV~l~~P~NPtG~v~-dl~~I~~la~~~gi~vIvD~a~a~--~~~~~pl~~gaDivv 201 (405)
T PRK08776 133 -----TDPRSLADALA---QSPKLVLIETPSNPLLRIT-DLRFVIEAAHKVGALTVVDNTFLS--PALQKPLEFGADLVL 201 (405)
T ss_pred -----CCHHHHHHhcC---cCCeEEEEECCCCCCCccC-CHHHHHHHHHHcCCEEEEECCCcc--cccCCcccccCCEEE
Confidence 38999999997 78999999999 5799997 999999999999999999999853 223467778999999
Q ss_pred eCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
+|+||+|+.+ |+-.+|+++++ +++.+.+... + ...+... + +. .+|..+ .|.+-
T Consensus 202 ~S~tK~l~g~---~~~~~G~vv~~~~~l~~~l~~~------------~-~~~g~~~-s----~~---~a~l~~--~gl~t 255 (405)
T PRK08776 202 HSTTKYINGH---SDVVGGAVVARDAELHQQLVWW------------A-NALGLTG-S----PF---DAFLTL--RGLRT 255 (405)
T ss_pred ecCceeecCC---CCceEEEEEeCCHHHHHHHHHH------------H-HhcCCCC-C----HH---HHHHHH--hhhCc
Confidence 9999999522 11225666664 4443332100 0 0011111 1 11 123333 34445
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 001989 868 LTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g 889 (985)
+..+.++..+++..+.+.|++.
T Consensus 256 l~~r~~~~~~na~~la~~L~~~ 277 (405)
T PRK08776 256 LDARLRVHQENADAIAALLDGH 277 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 6677788899999999999863
No 405
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=99.60 E-value=1.7e-13 Score=157.78 Aligned_cols=281 Identities=15% Similarity=0.159 Sum_probs=177.6
Q ss_pred HHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCC
Q 001989 636 NLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGN 714 (985)
Q Consensus 636 e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~ 714 (985)
++++.+++++|.+...+..++|++ +. ..+++.+. .++|+|+++.+.|+.+...++..|++++.++.++++.
T Consensus 75 ~lr~~ia~~~~~~~~~i~~t~G~~~~l---~~~~~~~~-----~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~ 146 (371)
T PRK05166 75 ALREAIAARTGVPADRIILGNGSEDLI---AVICRAVL-----RPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTPDLG 146 (371)
T ss_pred HHHHHHHHHhCcCHHHEEEcCCHHHHH---HHHHHHhc-----CCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCCCCC
Confidence 577888999998776666666654 33 22333321 4678999988766666666788999999999987788
Q ss_pred CCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHH--cCCEEEEEccccccccCCCCCC------ccCC-
Q 001989 715 INIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHD--NGGQVYMDGANMNAQVGLTSPG------YIGA- 784 (985)
Q Consensus 715 iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~--~galliVD~a~~~~~~~l~~pg------~~g~- 784 (985)
+|+++++++++ +++++|++++| |++|.+. +.+++.++++. .++++++|+++..-...-..+. ..+.
T Consensus 147 ~~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~-~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~ 222 (371)
T PRK05166 147 FDLDALCAAVA---RAPRMLMFSNPSNPVGSWL-TADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLP 222 (371)
T ss_pred CCHHHHHHhhh---cCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCC
Confidence 99999999997 67888999999 5799987 67777666654 4789999998732111000010 1111
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM 863 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l 863 (985)
-|++.|+.|.|++ .|.++|++++. +++.+.+... ....++++ ..+ .++.+.+.
T Consensus 223 vi~i~SfSK~~~l----~GlRiG~~i~~~~~l~~~~~~~--------------~~~~~~~~--~~q----~~~~~~l~-- 276 (371)
T PRK05166 223 WIVLRTFSKAYGL----AGLRVGYGLVSDPELVGLLDRV--------------RTPFNVNG--AAQ----AAALAALD-- 276 (371)
T ss_pred EEEEeechHhhhc----chhheeeeecCCHHHHHHHHHh--------------ccCCCCCH--HHH----HHHHHHhc--
Confidence 2567788888865 47899998764 4554433110 00111211 111 11122222
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-CCC
Q 001989 864 GSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-WPV 941 (985)
Q Consensus 864 g~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~p~ 941 (985)
..+-+++..+...++.+++.+.|++ ++.+ .++.+ .+ +.++++ .+..++.+.|.++||.+.... +..
T Consensus 277 ~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~--~p~~g-~f--l~~~~~-------~~~~~l~~~l~~~gi~v~p~~~~~~ 344 (371)
T PRK05166 277 DEEHLAKGVALALAERERLKKELAEMGYRI--APSRA-NF--LFFDAR-------RPASAVAEALLRQGVIVKPWKQPGF 344 (371)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCcCee--CCCcC-CE--EEEeCC-------CCHHHHHHHHHHCCeEEecCCCCCC
Confidence 2233455455566777888888886 4432 22222 22 234432 357889999999999875432 224
Q ss_pred CCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 942 PGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 942 ~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
.+++||+++ +.++.++ +++.|++++
T Consensus 345 ~~~iRi~~~---~~~~~~~--l~~~l~~i~ 369 (371)
T PRK05166 345 ETFIRVSIG---SPEENDH--FVAALDKVL 369 (371)
T ss_pred CCeEEEEcC---CHHHHHH--HHHHHHHHh
Confidence 589999994 6788888 666666654
No 406
>PRK08297 L-lysine aminotransferase; Provisional
Probab=99.60 E-value=9.6e-14 Score=162.54 Aligned_cols=343 Identities=15% Similarity=0.165 Sum_probs=204.3
Q ss_pred HHHHHHHHHhccccCcccccccccccccCCCc--ccccccccccc-c-cccCCCCchhhhhhHHHHHHHHHHHHHHHhCC
Q 001989 572 ELLRYIHLLQSKELSLCHSMIPLGSCTMKLNA--TTEMMPVTWPS-F-ANIHPFAPADQAQGYQEMFNNLGEWLCTITGF 647 (985)
Q Consensus 572 e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~--~~~~~~~~~~~-f-~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~ 647 (985)
+..+|++.+++-. ...||++++.+.. +...+...... . .+..... +...++.+.++++++-
T Consensus 43 dG~~ylD~~~g~~------~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~---------~~~~~la~~l~~~~~p 107 (443)
T PRK08297 43 TGRRYLDMFTFFA------SSALGMNHPALADDPEFRAELGRAALNKPSNSDVYT---------VEMARFVDTFARVLGD 107 (443)
T ss_pred CCCEeeecccCHh------hhcCCCCChHHhhHHHHHHHHHHhhhhccccCCcCC---------HHHHHHHHHHHhhcCC
Confidence 4556776655432 3468999888876 55444322110 0 1111111 1234567777777621
Q ss_pred C--ccceecCcHHHHHHHHHHHHHHHHH----hcCC--CCCCEEEE-cCCCCcccHHHHHHCCcE-----------EEEE
Q 001989 648 D--SFSLQPNAGAAGEYAGLMVIRAYHK----ARGD--HHRNVCII-PVSAHGTNPATAAMCGMK-----------IVSV 707 (985)
Q Consensus 648 ~--~~~~~~~sGa~a~~a~l~air~~~~----~~g~--~~~~~IIv-~~~~Hg~~~~~a~~~G~~-----------vv~v 707 (985)
+ ...++.+||++|++++++.+|.|.. .+|. +++.+||. ...+||....+....|.. ...+
T Consensus 108 ~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~ 187 (443)
T PRK08297 108 PELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRI 187 (443)
T ss_pred CCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCcccc
Confidence 1 2357789999999999999988742 1332 12456775 678999876665433210 0011
Q ss_pred cCCC-----CC----------CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc---cCHHHHHHHHHHcCCEEEEEcc
Q 001989 708 GTDA-----KG----------NINIEELRKAAEANRDNLSTLMVTYP-STHGVYE---EGIDEICKIIHDNGGQVYMDGA 768 (985)
Q Consensus 708 ~~d~-----~g----------~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~---~di~eI~~la~~~galliVD~a 768 (985)
|... .+ ..|++++++.+.++.+++++|+++-. ..-|++. ..+++|.++|+++|+++|+|++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV 267 (443)
T PRK08297 188 DNPKLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEV 267 (443)
T ss_pred CCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEech
Confidence 1100 00 01356677788766678999988743 3456653 2589999999999999999988
Q ss_pred ccccccCCCCCCcc--------CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCC
Q 001989 769 NMNAQVGLTSPGYI--------GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG 840 (985)
Q Consensus 769 ~~~~~~~l~~pg~~--------g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~ 840 (985)
+. |+.+.|.+ .+|+++++ |.+ |.+|++..+ ++....... +.. ..
T Consensus 268 ~t----GfGRtG~~~a~~~~gv~PDiv~~g--K~l--------~~~a~l~~~-~i~~~~~~~-~~~------------~~ 319 (443)
T PRK08297 268 QT----GVGLTGTAWAYQQLGVRPDIVAFG--KKT--------QVCGIMAGR-RVDEVEDNV-FAV------------SS 319 (443)
T ss_pred hh----ccCccchHHHHHhcCCCCCEEEec--ccc--------cccceecch-HHHHhhhhh-ccC------------cc
Confidence 63 44445432 37999763 765 223444433 221111000 000 00
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCee---ecCCCCceeeEEEEEecCccc
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL---FRGVNGTVAHEFIVDLRGLKN 914 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~---~~~~~~~~~~~~iv~~~~~~~ 914 (985)
...+++.|+++.++++.+.|..+..+++. ++..++.+++.++|++. ++.+ +.+. + .+ +.+.+..
T Consensus 320 ~~~~T~~gnpl~~aaa~a~L~~l~~~~l~---~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~-G-~~--~~i~~~~--- 389 (443)
T PRK08297 320 RINSTWGGNLVDMVRARRILEVIEEDGLV---ENAARQGEYLLARLEELAAEFPAVVSNVRGR-G-LM--CAFDLPT--- 389 (443)
T ss_pred ccCCCCCccHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHCCCcceeeecc-c-eE--EEEEecC---
Confidence 12234556778888888888888766543 45667778888888651 2211 1121 2 12 2344431
Q ss_pred cCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 915 TAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 915 ~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
......+.+.|.++|+++.... .+.+|++|+..+|++|||+ +++.|++++.++
T Consensus 390 --~~~~~~~~~~l~~~Gvl~~~~~---~~~lr~~P~l~~t~~eid~--~l~~l~~~l~~~ 442 (443)
T PRK08297 390 --TADRDEVIRRLWEEGVLVLPCG---ERSIRFRPALTVTTEEIDA--AIDALRRALPEV 442 (443)
T ss_pred --HHHHHHHHHHHHHCCEEEecCC---CCeEEEECCccCCHHHHHH--HHHHHHHHHHhh
Confidence 1124578889999999874332 2689999999999999999 788898888754
No 407
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.59 E-value=1.8e-13 Score=159.60 Aligned_cols=152 Identities=23% Similarity=0.251 Sum_probs=122.8
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|++.|.+. +.++.+|++++++++.++ .. +||+||++...|+.....+...++..|++++++|. ++
T Consensus 66 ~~le~~lA~l~g~~~--al~~~SG~~Ai~~al~al-l~--pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~d~~~ 140 (427)
T PRK05994 66 AVLEERVAALEGGTA--ALAVASGHAAQFLVFHTL-LQ--PGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADADDPAS 140 (427)
T ss_pred HHHHHHHHHHhCCCc--EEEEcCHHHHHHHHHHHH-hC--CCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCCCHHH
Confidence 457789999999876 668889998888777665 33 89999999999998887776656678999999876 45
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|-++|+|+++.|+ |.+++| ||
T Consensus 141 l~~ai~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD-~a~a~~~~~~pl~~gaDivv~S~tK~lgg~---~~ 216 (427)
T PRK05994 141 FERAITPRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVD-NTLASPYLIRPIEHGADIVVHSLTKFLGGH---GN 216 (427)
T ss_pred HHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEE-CCccccccCCccccCCcEEEEcCccccCCC---CC
Confidence 666 7889999999988 88999999999999999999999994 35565666677789999999998 766543 34
Q ss_pred CcEEEEE
Q 001989 368 PHAAFLA 374 (985)
Q Consensus 368 P~~G~l~ 374 (985)
+-+|++.
T Consensus 217 ~~gG~v~ 223 (427)
T PRK05994 217 SMGGIIV 223 (427)
T ss_pred cEEEEEE
Confidence 5556554
No 408
>PRK08636 aspartate aminotransferase; Provisional
Probab=99.59 E-value=3.6e-13 Score=156.77 Aligned_cols=308 Identities=12% Similarity=0.116 Sum_probs=188.1
Q ss_pred hhhHHHHHHHHHHHHHHHhCCC--cc-ceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCc
Q 001989 627 AQGYQEMFNNLGEWLCTITGFD--SF-SLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGM 702 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~--~~-~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~ 702 (985)
.+|..++.+.+.+++.+.+|.+ .. .+..++|++ |.. ++++.+. .++|.|+++++.+..+...++..|+
T Consensus 70 ~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~---~~~~~l~-----~~gd~Vlv~~P~y~~~~~~~~~~g~ 141 (403)
T PRK08636 70 SKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYV---HLVQAIT-----NPGDVAIVPDPAYPIHSQAFILAGG 141 (403)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHH---HHHHHhC-----CCCCEEEEcCCCCcchHHHHHhcCC
Confidence 4687777777777777777754 33 465555654 443 3333321 4789999999988777777889999
Q ss_pred EEEEEcCC--CCCCCCHHHH----HHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccc-
Q 001989 703 KIVSVGTD--AKGNINIEEL----RKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNA- 772 (985)
Q Consensus 703 ~vv~v~~d--~~g~iD~e~L----~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~- 772 (985)
+++.+|.+ .++.+|++++ ++++++.++++++|++++| |++|.+. ..+++|.++|+++++++++|.++..-
T Consensus 142 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~ 221 (403)
T PRK08636 142 NVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADIT 221 (403)
T ss_pred EEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhc
Confidence 99999874 3467898754 5555544467899999998 5799886 24788999999999999999987421
Q ss_pred ccCCCCC--Ccc--CCc--EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcc
Q 001989 773 QVGLTSP--GYI--GAD--VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAP 846 (985)
Q Consensus 773 ~~~l~~p--g~~--g~D--i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~ 846 (985)
..+...+ ..+ ..| +.+.|+.|+|+.| |.++|+++.++++...+.... . ....+.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~----GlRiG~iv~~~~li~~~~~~~-~-----------~~~~~~~~-- 283 (403)
T PRK08636 222 FDGYKTPSILEVEGAKDVAVESYTLSKSYNMA----GWRVGFVVGNKKLVGALKKIK-S-----------WLDYGMFT-- 283 (403)
T ss_pred cCCCCCCChhcCCCccccEEEEEecccccCCc----cceeeeeeCCHHHHHHHHHHH-H-----------HhcccCCh--
Confidence 1111001 111 123 4467888988654 789999998877654432110 0 00001111
Q ss_pred hhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHH
Q 001989 847 WGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAK 925 (985)
Q Consensus 847 ~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~ 925 (985)
..+. +++ .++. -..+-+++..+...++.+++.+.|++ ++.+. .+.+..+ +.++++... .+.+..++++
T Consensus 284 ~~q~---~~~-~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~p~~g~~--~~~~l~~~~--~~~~~~~l~~ 352 (403)
T PRK08636 284 PIQV---AAT-IALD-GDQSCVEEIRETYRKRRDVLIESFANAGWELQ--KPRASMF--VWAKIPEPA--RHLGSLEFSK 352 (403)
T ss_pred HHHH---HHH-HHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCccc--CCCcceE--EEEECCCcc--CCCCHHHHHH
Confidence 0111 111 1221 12333445555567777888888876 33332 2222222 345654100 0234678887
Q ss_pred HHH-HCCCccCC-CCCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 926 RLM-DYGFHGPT-MSWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 926 ~L~-~~Gi~~~~-~~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.|. ++||.+.. ..|. ..+++||++. .+.+++++ .++.|++.+++++
T Consensus 353 ~ll~~~gV~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~--~~~rl~~~l~~~~ 402 (403)
T PRK08636 353 QLLTEAKVAVSPGIGFGEYGDEYVRIALI--ENENRIRQ--AARNIKKFLKELE 402 (403)
T ss_pred HHHHhCCEEEecchhhCcCCCCeEEEEec--CCHHHHHH--HHHHHHHHHHhhc
Confidence 755 67988643 2232 2479999996 57888888 7788888776644
No 409
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=99.59 E-value=9.1e-14 Score=160.41 Aligned_cols=207 Identities=21% Similarity=0.211 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH-H---HHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT-A---AMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~-a---~~~G~~vv~v~~ 709 (985)
..++++.++++.|.+.. +.+++|+.|+.+++.++. .++|+||+++..|+..... . ...|++++.++.
T Consensus 63 ~~~Le~~lA~~~g~~~~-i~~~sG~~Ai~~~l~all--------~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~ 133 (388)
T PRK07811 63 RTALEEQLAALEGGAYG-RAFSSGMAATDCLLRAVL--------RPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDL 133 (388)
T ss_pred HHHHHHHHHHHhCCCce-EEeCCHHHHHHHHHHHHh--------CCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCC
Confidence 45788999999998875 344667776655544432 4788999988766643322 2 235888888875
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
.|+++|+++++ ++|++|++++|+ ++|.+. |+++|+++||++|+++++|+++.. +....|..+|+|+++
T Consensus 134 -----~d~e~l~~~i~---~~tklV~ie~p~NPtg~~~-dl~~I~~la~~~gi~lIvD~a~a~--~~~~~p~~~gaDivv 202 (388)
T PRK07811 134 -----SDLDAVRAAIT---PRTKLIWVETPTNPLLSIT-DIAALAELAHDAGAKVVVDNTFAS--PYLQQPLALGADVVV 202 (388)
T ss_pred -----CCHHHHHHhcC---cCCeEEEEECCCCCcceec-CHHHHHHHHHHcCCEEEEECCCCc--cccCCchhhCCcEEE
Confidence 48999999997 789999999995 689988 999999999999999999998753 223456667999999
Q ss_pred eCCcccccccCCCCCCc---eEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 789 LNLHKTFCIPHGGGGPG---MGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg---~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
+|++|+|+ ||+ +|++++++ ++...+.... ..++...+ +. .+|..+. +
T Consensus 203 ~S~sK~l~------g~~~~~gG~vv~~~~~l~~~~~~~~-------------~~~g~~~s-----~~---~a~l~~~--~ 253 (388)
T PRK07811 203 HSTTKYIG------GHSDVVGGALVTNDEELDEAFAFLQ-------------NGAGAVPG-----PF---DAYLTLR--G 253 (388)
T ss_pred ecCceeec------CCCCcEEEEEEECCHHHHHHHHHHH-------------HhcCCCCC-----HH---HHHHHHh--c
Confidence 99999984 443 68777764 4433332100 00111111 11 1233333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q 001989 865 SKGLTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~g 889 (985)
.+.+..+.++..+++..+++.|++.
T Consensus 254 L~tl~~R~~~~~~na~~la~~L~~~ 278 (388)
T PRK07811 254 LKTLAVRMDRHSENAEAVAEFLAGH 278 (388)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445666777888999999999863
No 410
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=99.59 E-value=3.1e-13 Score=156.51 Aligned_cols=212 Identities=16% Similarity=0.151 Sum_probs=149.0
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|++.|.+. ..++.+|++++..+++++ . ++||+|+++...|+.....++.+++..|++++.++. ++
T Consensus 63 ~~Le~~lA~l~g~~~--~v~~~sG~~Ai~~~l~al-l--~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~ 137 (405)
T PRK08776 63 DLLGEALAELEGGAG--GVITATGMGAINLVLNAL-L--QPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADLTDPRS 137 (405)
T ss_pred HHHHHHHHHHhCCCc--eEEEcCHHHHHHHHHHHH-h--CCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECCCCHHH
Confidence 446789999999754 457777887776666554 2 389999999999988777777666678899988865 45
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|.++|+|++++|+ |.|++|- +
T Consensus 138 l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD-~a~a~~~~~~pl~~gaDivv~S~tK~l~g~~---~ 213 (405)
T PRK08776 138 LADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVD-NTFLSPALQKPLEFGADLVLHSTTKYINGHS---D 213 (405)
T ss_pred HHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEE-CCCcccccCCcccccCCEEEecCceeecCCC---C
Confidence 666 7788999999998 89999999999999999999999995 34444555567789999999998 7776541 1
Q ss_pred CcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 368 PHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 368 P~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
--+|.+.++ +++.+++-. .+...| .+ .+++ .+ |+...|.+-++.+
T Consensus 214 ~~~G~vv~~~~~l~~~l~~-------------------------~~~~~g---~~-~s~~---~a--~l~~~gl~tl~~r 259 (405)
T PRK08776 214 VVGGAVVARDAELHQQLVW-------------------------WANALG---LT-GSPF---DA--FLTLRGLRTLDAR 259 (405)
T ss_pred ceEEEEEeCCHHHHHHHHH-------------------------HHHhcC---CC-CCHH---HH--HHHHhhhCcHHHH
Confidence 124555554 444433300 000001 11 1122 11 1233455566778
Q ss_pred HHHHHHHHHHHHHHHhcCCCeE
Q 001989 447 AQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
.++..+++..+.+.|++...++
T Consensus 260 ~~~~~~na~~la~~L~~~p~v~ 281 (405)
T PRK08776 260 LRVHQENADAIAALLDGHAAVN 281 (405)
T ss_pred HHHHHHHHHHHHHHHHcCCCee
Confidence 8888999999999999875454
No 411
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.59 E-value=7.4e-14 Score=162.61 Aligned_cols=143 Identities=17% Similarity=0.136 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
..++++.++++.|.+.+ +.++||+.|+..++.++ . .++|+||++...|+..... +...|++++++++
T Consensus 66 ~~~le~~lA~l~g~~~a-v~~sSGt~Al~~al~~l---l-----~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~ 136 (433)
T PRK08134 66 VAVLEERVAALEGGVGA-IATASGQAALHLAIATL---M-----GAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKP 136 (433)
T ss_pred HHHHHHHHHHHhCCCcE-EEeCCHHHHHHHHHHHH---h-----CCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECC
Confidence 56889999999998774 66778888775554433 1 3678999988767643222 3457999999997
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++++++|+ ++|++|++++| |++|.+. |+++|+++||++|++++||+++..+. +..|.++|+|+++
T Consensus 137 ~-----d~~~l~~~i~---~~TklV~~e~~~np~g~v~-Di~~I~~la~~~gi~livD~t~a~~~--~~~pl~~GaD~vv 205 (433)
T PRK08134 137 G-----DIDGWRAAIR---PNTRLLFGETLGNPGLEVL-DIPTVAAIAHEAGVPLLVDSTFTTPY--LLRPFEHGADLVY 205 (433)
T ss_pred C-----CHHHHHHhcC---CCCeEEEEECCCcccCccc-CHHHHHHHHHHcCCEEEEECCCcccc--cCCchhcCCCEEE
Confidence 4 8999999998 89999999998 5689988 99999999999999999999986443 3457788999999
Q ss_pred eCCccccc
Q 001989 789 LNLHKTFC 796 (985)
Q Consensus 789 ~s~hK~l~ 796 (985)
+|.||+++
T Consensus 206 ~S~tK~l~ 213 (433)
T PRK08134 206 HSATKFLG 213 (433)
T ss_pred eccccccC
Confidence 99999984
No 412
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.59 E-value=3.6e-14 Score=165.11 Aligned_cols=144 Identities=17% Similarity=0.213 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~vv~v~~ 709 (985)
..++++.++++.|.+. .+.++||++|+.++++++. .+||+||++...|+.+.. .+...|+++++++
T Consensus 71 ~~~le~~la~l~g~~~-~v~fsSG~~Ai~~al~~ll--------~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd- 140 (437)
T PRK05613 71 VEALENRIASLEGGVH-AVAFASGQAAETAAILNLA--------GAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVE- 140 (437)
T ss_pred HHHHHHHHHHHhCCCe-EEEeCCHHHHHHHHHHHhc--------CCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEEC-
Confidence 5678999999999864 4666778877754444331 468899998877776532 2456899999997
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
++ .|+++++++|+ ++|++|+++++ |++|.+. |+++|+++||++|++++||++++. +.+..|.++|+|+++
T Consensus 141 ~~---~d~e~l~~~l~---~~tk~V~~e~~~Np~~~v~-di~~I~~la~~~gi~livD~t~a~--g~~~~p~~~GaDivv 211 (437)
T PRK05613 141 NP---DDPESWQAAVQ---PNTKAFFGETFANPQADVL-DIPAVAEVAHRNQVPLIVDNTIAT--AALVRPLELGADVVV 211 (437)
T ss_pred CC---CCHHHHHHhCC---ccCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCeEEEECCCcc--ccccChHHhCCCEEE
Confidence 32 28999999998 78998988876 6788887 999999999999999999999853 334567788999999
Q ss_pred eCCccccc
Q 001989 789 LNLHKTFC 796 (985)
Q Consensus 789 ~s~hK~l~ 796 (985)
+|+||+++
T Consensus 212 ~S~~K~l~ 219 (437)
T PRK05613 212 ASLTKFYT 219 (437)
T ss_pred eeccceec
Confidence 99999884
No 413
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=99.59 E-value=3.1e-14 Score=154.61 Aligned_cols=289 Identities=18% Similarity=0.120 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH---HHHCCcEEEEEc
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT---AAMCGMKIVSVG 708 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~---a~~~G~~vv~v~ 708 (985)
+...++++.+++++|. ...+++.||++++..++ +.+. .++..||+...+|-..... ....++....+.
T Consensus 35 ~~~~~~e~~~ae~~g~-~a~~Fv~sGT~aN~lal---~~~~-----~~~~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~ 105 (342)
T COG2008 35 PTTNALEQRIAELFGK-EAALFVPSGTQANQLAL---AAHC-----QPGESVICHETAHIYTDECGAPEFFGGGQKLPIV 105 (342)
T ss_pred HHHHHHHHHHHHHhCC-ceEEEecCccHHHHHHH---HHhc-----CCCCeEEEeccccceecccCcHHHHcCCceeccC
Confidence 4466889999999999 44566678888774444 3332 3677899988888544332 233444444444
Q ss_pred CCCCCCCCHHHHHHHHHh----cCCCEEEEEEEcCCCccccc--cCHHHHHHHHHHcCCEEEEEcccc-ccccCCCCC--
Q 001989 709 TDAKGNINIEELRKAAEA----NRDNLSTLMVTYPSTHGVYE--EGIDEICKIIHDNGGQVYMDGANM-NAQVGLTSP-- 779 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~----~~~~t~~Vvv~~pn~~G~i~--~di~eI~~la~~~galliVD~a~~-~~~~~l~~p-- 779 (985)
..++|.+++|++++.|.. +.+...+++.+.++..|.+. +.|++|+++||++|+.||+|||-. ++...+..+
T Consensus 106 ~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~ 185 (342)
T COG2008 106 PGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALK 185 (342)
T ss_pred CCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHH
Confidence 457899999999998863 11233455555566778885 257888999999999999999863 222222211
Q ss_pred -CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 001989 780 -GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 780 -g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
-..++|++++++.|.+ |.|+..+++.+.++.+....+ ++..+ +.+. +...++++|.
T Consensus 186 ~~~~~~D~v~~~~tK~g------~~~~gAiv~gn~~~~~~a~~~-----------rK~~G-gl~~-----k~r~laA~~~ 242 (342)
T COG2008 186 TIKSYVDSVSFCLTKGG------GAPVGAIVFGNRDFAKRARRW-----------RKRAG-GLMR-----KARFLAAQGL 242 (342)
T ss_pred HHHhhCCEEEEecccCC------cceeeeEEEcCHHHHHHHHHH-----------HHHhc-ccHh-----hhhHHHHHHH
Confidence 2347999999999965 456667777777666544211 01111 1111 2223333333
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC
Q 001989 859 YIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT 936 (985)
Q Consensus 859 ~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~ 936 (985)
+ ++.++-.+....+..+.|++|+++|.+ |+++..+ +..|.+.+.++ +...+.|...|+..-.
T Consensus 243 ~--~l~~~~~~~~~~Han~mA~~La~~~~~~~G~~~~~~----~~tN~vf~~l~----------~~~i~~l~~~~~~~~~ 306 (342)
T COG2008 243 Y--ALEDDVWRLAADHANAMAARLAEGLEAKPGVKLAFP----VETNMVFVRLP----------ESAIEALRLAGALFYR 306 (342)
T ss_pred H--HHhccHHHHHHHHHHHHHHHHHHhhhhcCCceeccC----CcccEEEEECC----------hHHHHHHHhhchhhee
Confidence 3 343443344444445558999999984 5665432 24556666654 1223666666665432
Q ss_pred --CCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 937 --MSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 937 --~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
...+....+|+..+..+|+||||+ ++..+++.
T Consensus 307 ~~~~~~~~~~vRfvts~a~~~edv~~--~~~~~~~~ 340 (342)
T COG2008 307 GVLIGAHGEIVRFVTSWATSEEDVDE--LVAAIKAL 340 (342)
T ss_pred eeeccCCCceEEEEeeccCCHHHHHH--HHHHHHHh
Confidence 111111379999999999999999 55555543
No 414
>PRK06149 hypothetical protein; Provisional
Probab=99.59 E-value=1.8e-13 Score=174.38 Aligned_cols=324 Identities=18% Similarity=0.219 Sum_probs=197.0
Q ss_pred cccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhC--CCccceecCcHHHHHHHHHHHHHH
Q 001989 593 PLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITG--FDSFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 593 ~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G--~~~~~~~~~sGa~a~~a~l~air~ 670 (985)
.+|++++.+..+...+.......+ .+. .+...++.+.|++++. .+ ..++++||++|++++++.+|.
T Consensus 596 ~lGh~hp~v~~Ai~~q~~~l~~~~---~~~--------~~~~~elae~L~~~~p~~~~-~v~f~~SGsEA~e~AlklAr~ 663 (972)
T PRK06149 596 VLGHGHPRLAAAAARQWSLLNTNS---RFH--------YAAVAEFSERLAALAPDGLD-TVFLVNSGSEANDLAIRLAWA 663 (972)
T ss_pred ccCCCCHHHHHHHHHHHHhccccc---ccc--------CHHHHHHHHHHHHhCCCCcC-EEEEeCCchHHHHHHHHHHHH
Confidence 588888877766544432111111 111 1234578889999883 33 356789999999999998887
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC-------c------EEEEEcCCCC----C-CCC-----HHHHHHHHH-
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCG-------M------KIVSVGTDAK----G-NIN-----IEELRKAAE- 725 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G-------~------~vv~v~~d~~----g-~iD-----~e~L~~~i~- 725 (985)
|. ++.+||. ...+||....+....+ . .+..++.... + ..| .+++++.++
T Consensus 664 ~t------gr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~ 737 (972)
T PRK06149 664 AS------GRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEE 737 (972)
T ss_pred hc------CCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHH
Confidence 62 3445554 6689987644321110 0 1223332111 1 112 345555543
Q ss_pred --hcCCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccCCCCCCc-------c--CCcEEEe
Q 001989 726 --ANRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY-------I--GADVCHL 789 (985)
Q Consensus 726 --~~~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~~pg~-------~--g~Di~~~ 789 (985)
+..+++++|+++-. ...|.+. + +++|.++|+++|+++|+|++| .|+++.|. + .+|++++
T Consensus 738 ~~~~~~~iAavI~Epv~g~gG~i~-~p~~yL~~l~~lc~~~g~llI~DEV~----tGfGRtG~~~~a~e~~gv~PDivt~ 812 (972)
T PRK06149 738 LDASGRGLAGFICEPVYGNAGGIA-LPPGYLQQVYAAVRARGGVCIADEVQ----VGYGRLGHYFWGFEQQGVVPDIITM 812 (972)
T ss_pred HhhcCCceEEEEEcccccCCCccc-CCHHHHHHHHHHHHHcCCEEEEEeeh----hcCCccCccchhhhhcCCCCCEEEe
Confidence 23357888887642 3457665 5 999999999999999999887 33444443 1 3799866
Q ss_pred CCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHH
Q 001989 790 NLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 790 s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~ 869 (985)
+ |.+ |+|-| +|.+++++++.+.+... + .+.+++.|++..++++.+.|..+.++++.
T Consensus 813 g--K~l----g~G~P-l~av~~~~~i~~~~~~~--~---------------~~~sT~~gnP~~~aaala~L~~i~~e~l~ 868 (972)
T PRK06149 813 A--KGM----GNGHP-LGAVITRREIAEALEAE--G---------------YFFSSTGGSPVSCRIGMAVLDVLREEKLQ 868 (972)
T ss_pred c--ccc----cCCee-eEEEEEcHHHHhhhccC--C---------------cccCCCCCCHHHHHHHHHHHHHHHhcCHH
Confidence 3 766 43434 57777788776655321 0 00122356778888888999988776554
Q ss_pred HHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecC-c--cccCCCCHHHHHHHHHHCCCccCCCCCCC
Q 001989 870 EASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRG-L--KNTAGIEPEDVAKRLMDYGFHGPTMSWPV 941 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~-~--~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~ 941 (985)
++..+..++|+++|++. ..++ +.|. + .+. -+.+.. . +.........+.++|.++|+++.... +.
T Consensus 869 ---~~~~~~G~~l~~~L~~l~~~~~~i~~vrG~-G-l~~--gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g-~~ 940 (972)
T PRK06149 869 ---ENARRVGDHLKARLEALADRHPLIGAVHGM-G-LYL--GVELVRDRQTLEPATEETAAICDRLLELGVIMQPTG-DH 940 (972)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhCCCeEEEeec-c-eEE--EEEEecCcccCCCChHHHHHHHHHHHhCCeEEeecC-CC
Confidence 45667778888888752 3322 1221 2 121 222210 0 00000114578889999999986432 12
Q ss_pred CCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 942 PGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 942 ~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.+.|||.|+..+|++|||. ++++|++++.+
T Consensus 941 ~~vl~~~Ppl~it~~~id~--~~~~l~~~l~~ 970 (972)
T PRK06149 941 LNILKIKPPLCLDRESADF--FVDMLDRVLTE 970 (972)
T ss_pred CCEEEEECCCcCCHHHHHH--HHHHHHHHHHh
Confidence 3789999999999999999 88889888753
No 415
>PRK05967 cystathionine beta-lyase; Provisional
Probab=99.59 E-value=1.3e-13 Score=157.96 Aligned_cols=211 Identities=17% Similarity=0.107 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~vv~v~~ 709 (985)
.+.+++.++.+-|.+.. +.+.||..|+.++++++. ++||+||+++..++.+.. .++..|+++..++.
T Consensus 66 ~~~Le~~la~le~~~~~-v~~sSG~aAi~~~l~all--------~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~ 136 (395)
T PRK05967 66 TDALCKAIDALEGSAGT-ILVPSGLAAVTVPFLGFL--------SPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDP 136 (395)
T ss_pred HHHHHHHHHHHhCCCCE-EEECcHHHHHHHHHHHhc--------CCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCC
Confidence 45688899988876554 555668777755554432 478999999887766543 24678999999875
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ +.++++++++ ++|++|++++| |+++.+. ||++|+++||++|++++||.++. ...+.+|.++|+|+++
T Consensus 137 ~-----~~e~l~~al~---~~TklV~lesPsNP~l~v~-dl~~I~~la~~~g~~vvVD~t~a--~p~~~~pl~~GaDivv 205 (395)
T PRK05967 137 E-----IGAGIAKLMR---PNTKVVHTEAPGSNTFEMQ-DIPAIAEAAHRHGAIVMMDNTWA--TPLYFRPLDFGVDISI 205 (395)
T ss_pred C-----CHHHHHHhcC---cCceEEEEECCCCCCCcHH-HHHHHHHHHHHhCCEEEEECCcc--CceecChhHcCCCEEE
Confidence 3 5688999997 88999999998 5688887 89999999999999999999874 2334688999999999
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
.|..|+++ |-|.--+|+++.++++++.+... . ..++...+ + ..|| +...|.+.+
T Consensus 206 ~S~tKy~~---Gh~d~~~G~v~~~~~~~~~l~~~-~------------~~~G~~~~-----p---~da~--l~~rgl~Tl 259 (395)
T PRK05967 206 HAATKYPS---GHSDILLGTVSANEKCWPQLLEA-H------------GTLGLCAG-----P---DDTY--QILRGLRTM 259 (395)
T ss_pred EecccccC---CCCCeeEEEEEcCHHHHHHHHHH-H------------HHcCCCCC-----H---HHHH--HHHcCcccH
Confidence 99999974 11222467776665543322100 0 01122111 1 1234 445566677
Q ss_pred HHHHHHHHHHHHHHHHHhhccC
Q 001989 869 TEASKIAILNANYMAKRLEKHY 890 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g~ 890 (985)
.-+++++.+++..+++.|++..
T Consensus 260 ~lR~~~~~~na~~lA~~L~~hp 281 (395)
T PRK05967 260 GIRLEHHRKSALEIARWLEGRP 281 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 8888999999999999998743
No 416
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=99.59 E-value=8e-14 Score=163.01 Aligned_cols=340 Identities=12% Similarity=0.130 Sum_probs=196.2
Q ss_pred HHHHHHHHHhccccCcccccccccccccCCC--ccccccccccc--cccccCCCCchhhhhhHHHHHHHHHHHHHHHhCC
Q 001989 572 ELLRYIHLLQSKELSLCHSMIPLGSCTMKLN--ATTEMMPVTWP--SFANIHPFAPADQAQGYQEMFNNLGEWLCTITGF 647 (985)
Q Consensus 572 e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~--~~~~~~~~~~~--~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~ 647 (985)
+..+|++..++-. ...||++++.+. .+...+..... .+.+.+... ....++.+.++++++.
T Consensus 36 dG~~ylD~~~g~~------~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~---------~~~~~l~~~l~~~~~~ 100 (431)
T TIGR03251 36 DGRRYLDMFSFFA------SMALGMNHPALVDDLAFRARLGAAAVNKPSNSDVYT---------VAMARFVDTFARVLGD 100 (431)
T ss_pred CCCChhhcccChh------hcCCCCCChhhhHHHHHHHHHHHhhhcccccCCCCC---------HHHHHHHHHHHHhcCC
Confidence 5667888766543 446899988887 44433332111 111111111 1233556667776521
Q ss_pred C--ccceecCcHHHHHHHHHHHHHHHHH----hcCCC--CCCEEEE-cCCCCcccHHHHHHCCcE-E----------EEE
Q 001989 648 D--SFSLQPNAGAAGEYAGLMVIRAYHK----ARGDH--HRNVCII-PVSAHGTNPATAAMCGMK-I----------VSV 707 (985)
Q Consensus 648 ~--~~~~~~~sGa~a~~a~l~air~~~~----~~g~~--~~~~IIv-~~~~Hg~~~~~a~~~G~~-v----------v~v 707 (985)
+ ...++.+||++|++++++.+|.|.. .+|.. ++.+||. ...+||....+....|-. . ..+
T Consensus 101 ~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~ 180 (431)
T TIGR03251 101 PALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRI 180 (431)
T ss_pred CCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccC
Confidence 1 2347789999999999999998741 12321 1456765 668999876654432211 0 001
Q ss_pred c-------CCCCC--------CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc---cCHHHHHHHHHHcCCEEEEEcc
Q 001989 708 G-------TDAKG--------NINIEELRKAAEANRDNLSTLMVTYP-STHGVYE---EGIDEICKIIHDNGGQVYMDGA 768 (985)
Q Consensus 708 ~-------~d~~g--------~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~---~di~eI~~la~~~galliVD~a 768 (985)
+ .+.+. ..+++++++.+.++.+++++|+++-. ...|++. ..+++|.++|+++|+++++|++
T Consensus 181 ~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV 260 (431)
T TIGR03251 181 DNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEV 260 (431)
T ss_pred CCCcccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 1 10000 02355667777655678999999753 3456653 2589999999999999999998
Q ss_pred ccccccCCCCCCc--------cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCC
Q 001989 769 NMNAQVGLTSPGY--------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG 840 (985)
Q Consensus 769 ~~~~~~~l~~pg~--------~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~ 840 (985)
+. |+.+.|. ..+|+++++ |.+ |.+|++..+ ++..... ..+.+ .+
T Consensus 261 ~t----G~GrtG~~~a~~~~gv~PDi~~~g--K~~--------~~~g~~~~~-~i~~~~~-~~~~~------------~~ 312 (431)
T TIGR03251 261 QT----GVGLTGTAWAYQQLGVQPDIVAFG--KKT--------QVCGIMAGR-RVDEVAD-NVFAV------------PS 312 (431)
T ss_pred hh----ccCccchHHHHHhcCCCCCEEEec--ccC--------ccceEEecc-hHHHhhh-hcccC------------cc
Confidence 74 3344432 247998764 654 345666543 2211110 00000 00
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CC-eeecCCCCceeeEEEEEecCccccC
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YP-ILFRGVNGTVAHEFIVDLRGLKNTA 916 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~-l~~~~~~~~~~~~~iv~~~~~~~~~ 916 (985)
...+++.|+++.++++.+.|..+..+++.+ +..++.+++.++|++. +. +.........+ +.+.++.
T Consensus 313 ~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~---~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~--~~i~~~~----- 382 (431)
T TIGR03251 313 RLNSTWGGNLVDMVRATRILEIIEEERLVD---NARVQGAHLLARLHELAAEFPHLVSNPRGRGLM--CAFDLPS----- 382 (431)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHHHHHHHhCccceeccccccee--EEEEeCC-----
Confidence 112334567777888888888887666543 4556667777776541 22 32111101111 2334431
Q ss_pred CCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 917 GIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 917 g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
......+.+.|.++|+++.... .+.+|++|+..+|++|||+ ++++|++
T Consensus 383 ~~~~~~~~~~l~~~Gvl~~~~g---~~~lr~~P~l~~t~~eid~--~l~~l~~ 430 (431)
T TIGR03251 383 TADRDEVIRQLYREGVLLLGCG---ERSIRFRPPLTVTREEIDA--AIDAIRR 430 (431)
T ss_pred HHHHHHHHHHHHhCCeEEecCC---CCeEEEECCccCCHHHHHH--HHHHHHh
Confidence 1124578899999999974322 2689999999999999999 6666654
No 417
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=99.59 E-value=5.6e-13 Score=153.19 Aligned_cols=265 Identities=15% Similarity=0.094 Sum_probs=176.7
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-----
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----- 288 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----- 288 (985)
.++++.+|+++|.++.++.+++|++.++..+..++ . ++||+|++++-.|+.+...++ ..|++++.++.
T Consensus 70 ~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~l-~--~~gd~vl~~~p~y~~~~~~~~----~~g~~~~~~~~~~~~~ 142 (367)
T PRK02731 70 FELKAALAEKFGVDPERIILGNGSDEILELLARAY-L--GPGDEVIYSEHGFAVYPIAAQ----AVGAKPVEVPAKDYGH 142 (367)
T ss_pred HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHh-c--CCCCEEEEecCCHHHHHHHHH----HcCCeEEEecccCCCC
Confidence 46888999999998888989998887665554443 2 378999999988876655443 46888887754
Q ss_pred --hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhC--CcEEEEEecCccccCCCC---C----Ccccce-EEEe
Q 001989 289 --KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHAN--GVKVVMATDLLALTILKP---P----GELGAD-IVVG 354 (985)
Q Consensus 289 --~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~--galliV~a~~~~lg~l~~---~----~~~GaD-i~v~ 354 (985)
+++++ +++++++|++.+| |.+|.+.|.+++.++++.+ |+++++|. ......... + .+.+-+ |+++
T Consensus 143 ~~~~l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De-~y~~~~~~~~~~~~~~~~~~~~~~i~~~ 221 (367)
T PRK02731 143 DLDAMLAAVTPRTRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDE-AYAEYVRRKDYEDGLELVAKFPNVVVTR 221 (367)
T ss_pred CHHHHHHHhCCCCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEEC-cHHHhccCcCcccHHHHHhhcCCEEEEe
Confidence 34555 6778999999998 7899999999999999875 88988843 222111100 0 011223 4555
Q ss_pred cC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH
Q 001989 355 SA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 355 s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~ 433 (985)
|. |.|+. +|..+|++++++++++.+.. .+.+.++++ . +..++.
T Consensus 222 S~SK~~g~----~G~RiG~l~~~~~~~~~l~~----------------------------~~~~~~~~~-~---~~~~a~ 265 (367)
T PRK02731 222 TFSKAYGL----AGLRVGYGIAPPEIIDALNR----------------------------VRQPFNVNS-L---ALAAAV 265 (367)
T ss_pred eehHhhcC----cccceeeeeCCHHHHHHHHH----------------------------ccCCCCCCH-H---HHHHHH
Confidence 65 76643 34456999998887765510 000111211 1 112222
Q ss_pred HHHHhC-cchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeeec----CC
Q 001989 434 YAVYHG-PEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVVD----SN 505 (985)
Q Consensus 434 ~l~~~g-~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~~----~~ 505 (985)
.++. .+.++++.++..++.+++.+.|++.| +++.. +...-+.++.+. +.++.++|.++||.+.... ++
T Consensus 266 --~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~-~~g~~~~i~~~~~~~~~~~~~~L~~~gI~v~~~~~~~~~~ 341 (367)
T PRK02731 266 --AALDDDAFVEKSRALNAEGMAWLTEFLAELG-LEYIP-SVGNFILVDFDDGKDAAEAYQALLKRGVIVRPVAGYGLPN 341 (367)
T ss_pred --HHhCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CccCC-CCceEEEEECCCCCCHHHHHHHHHHCCEEEEeCCCCCCCC
Confidence 2222 23357777788888899999999886 76652 222234455532 7899999999999886532 46
Q ss_pred eEEEEeccCCCHHHHHHHHHHHhC
Q 001989 506 TVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 506 ~lris~t~~~t~edId~li~aL~~ 529 (985)
.+|++++ +.+|+++++++|++
T Consensus 342 ~iRis~~---~~~e~~~l~~aL~~ 362 (367)
T PRK02731 342 ALRITIG---TEEENRRFLAALKE 362 (367)
T ss_pred eEEEecC---CHHHHHHHHHHHHH
Confidence 8999986 78999999999974
No 418
>PRK09265 aminotransferase AlaT; Validated
Probab=99.59 E-value=2.4e-13 Score=158.31 Aligned_cols=296 Identities=13% Similarity=0.049 Sum_probs=171.9
Q ss_pred HHHHHHHHHh------CCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 636 NLGEWLCTIT------GFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 636 e~~~~la~l~------G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
++++.+++.+ +.+...+..++|++ +. ..+++.+. .++|+|+++++.|+.+...++..|.+++.++
T Consensus 76 ~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l---~~~~~~~~-----~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~ 147 (404)
T PRK09265 76 SARKAIMQYYQQKGIPDVDVDDIYIGNGVSELI---VMAMQALL-----NNGDEVLVPAPDYPLWTAAVSLSGGKPVHYL 147 (404)
T ss_pred HHHHHHHHHHhccCCCCCCcccEEEeCChHHHH---HHHHHHhC-----CCCCEEEEeCCCCcChHHHHHHcCCEEEEEe
Confidence 4555556555 45555555555554 33 23333331 4688999999988887777888899998888
Q ss_pred CCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccc-cC--CCCC
Q 001989 709 TDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQ-VG--LTSP 779 (985)
Q Consensus 709 ~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~-~~--l~~p 779 (985)
++. ++.+|+++++++++ +++++|++++| |++|.+. + +++|.++|+++|+++++|+++..-. .+ ....
T Consensus 148 ~~~~~~~~~d~~~l~~~~~---~~~~~v~l~~P~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~ 223 (404)
T PRK09265 148 CDEEAGWFPDLDDIRSKIT---PRTKAIVIINPNNPTGAVY-SKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISI 223 (404)
T ss_pred cccccCCCCCHHHHHHhcc---ccceEEEEECCCCCCCcCC-CHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCH
Confidence 754 36799999999987 78999999999 4799887 5 8999999999999999999873211 01 0011
Q ss_pred Ccc--CCc-EEEeCCcccccccCCCCCCceEEEEEc--ccc----cCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhh
Q 001989 780 GYI--GAD-VCHLNLHKTFCIPHGGGGPGMGPIGVK--KHL----APFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 780 g~~--g~D-i~~~s~hK~l~~p~g~GGPg~G~i~~~--~~l----~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~ 850 (985)
..+ ... +++.|+.|+|++| |.++|++++. +.+ .+.+. ... ....+.+ ..++.
T Consensus 224 ~~~~~~~~vi~~~S~SK~~~~p----GlRiG~~v~~~~~~~~~~~~~~~~--~~~-----------~~~~~~~--~~~q~ 284 (404)
T PRK09265 224 ASLAPDLLCVTFNGLSKAYRVA----GFRVGWMVLSGPKKHAKGYIEGLD--MLA-----------SMRLCAN--VPAQH 284 (404)
T ss_pred HHcCCCceEEEEecchhhccCc----ccceEEEEEeCchHHHHHHHHHHH--HHh-----------ccccCCC--cHHHH
Confidence 111 112 3456778888544 6789999963 221 11110 000 0001111 11121
Q ss_pred HHHHHHHHHHHHhcHHHHHHH---HHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH
Q 001989 851 LILPISYTYIAMMGSKGLTEA---SKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL 927 (985)
Q Consensus 851 ~~~~~a~a~l~~lg~eGl~~~---~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L 927 (985)
++.++|. ..+.+.+. .++..++++++.+.|++...+.+..+.+..+ +.++++........+.+.+.+.|
T Consensus 285 ----~~~~~l~--~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~~--l~~~~~~~~~~~~~~~~~~~~~l 356 (404)
T PRK09265 285 ----AIQTALG--GYQSINELILPGGRLYEQRDRAWELLNAIPGVSCVKPKGALY--AFPKLDPKVYPIHDDEQFVLDLL 356 (404)
T ss_pred ----HHHHHhc--CchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCcceE--EEEEecccccCCCCHHHHHHHHH
Confidence 1112221 11112222 2345566777888887521222222223222 33454310000001234566778
Q ss_pred HHCCCccCC-CCCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 928 MDYGFHGPT-MSWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 928 ~~~Gi~~~~-~~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.++|+.+.. ..|+ .++++|+++. .+.|++++ .++.|++.+++.
T Consensus 357 ~~~gv~v~pg~~F~~~~~~~~Ri~~~--~~~e~l~~--~l~rl~~~l~~~ 402 (404)
T PRK09265 357 LQEKVLLVQGTGFNWPEPDHFRIVTL--PRVDDLEE--AIGRIGRFLSGY 402 (404)
T ss_pred HhCCEEEECchhhCCCCCCeEEEEeC--CCHHHHHH--HHHHHHHHHHHh
Confidence 889998643 2232 3579999994 67899999 778888777643
No 419
>PRK04311 selenocysteine synthase; Provisional
Probab=99.59 E-value=1.4e-13 Score=160.64 Aligned_cols=290 Identities=21% Similarity=0.230 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCc----c--cHHHHHHCCcEEEEE
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHG----T--NPATAAMCGMKIVSV 707 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg----~--~~~~a~~~G~~vv~v 707 (985)
..++++.+++++|.+.+ +.+++|+.|+..++ ..+ .++++||+++..|. + .+...+..|++++++
T Consensus 129 ~~~~e~~lA~l~Gae~a-~vv~sgtaAl~l~l---~~l------~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v 198 (464)
T PRK04311 129 DRALAALLCALTGAEDA-LVVNNNAAAVLLAL---NAL------AAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEV 198 (464)
T ss_pred HHHHHHHHHHHhCCCeE-EEECCHHHHHHHHH---HHh------CCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEE
Confidence 55788999999999864 45667777664333 221 36789999875443 2 234456789999999
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-C--cccc-ccCHHHHHHHHHHcCCEEEEEccccc-------cccC-
Q 001989 708 GTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-T--HGVY-EEGIDEICKIIHDNGGQVYMDGANMN-------AQVG- 775 (985)
Q Consensus 708 ~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~--~G~i-~~di~eI~~la~~~galliVD~a~~~-------~~~~- 775 (985)
+.+ +..++++++++|+ ++|++|++++++ + +|.. ..|+++|+++||++|+++++|+++.. ++..
T Consensus 199 ~~~--~~t~~~dle~aI~---~~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~ 273 (464)
T PRK04311 199 GTT--NRTHLRDYEQAIN---ENTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDE 273 (464)
T ss_pred CCC--CCCCHHHHHHhcC---ccCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCC
Confidence 863 3468999999998 889999999874 3 4532 13899999999999999999985310 0000
Q ss_pred --CCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 776 --LTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 776 --l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
+..+.++|+|++++|+||+| |||.+|++++++++.+.+.....+.. . .+. +..+.+
T Consensus 274 p~~~~~l~~GaDiv~fSg~K~L------gGp~~G~i~g~~~li~~l~~~~~~r~-----------l-r~d----k~~l~~ 331 (464)
T PRK04311 274 PTVQELLAAGVDLVTFSGDKLL------GGPQAGIIVGKKELIARLKKHPLKRA-----------L-RVD----KLTLAA 331 (464)
T ss_pred CchhhHHhcCCcEEEecCcccc------cCCceEEEEEcHHHHHHHhhchhHHH-----------H-hcc----hHHHHH
Confidence 11234589999999999998 67889999999887765543211100 0 000 001111
Q ss_pred HHHH--HHHH----HhcHHH---HHHHHHHHHHHHHHHHHHhhccC------Ceeec----C--C-CCceeeEEEEEecC
Q 001989 854 PISY--TYIA----MMGSKG---LTEASKIAILNANYMAKRLEKHY------PILFR----G--V-NGTVAHEFIVDLRG 911 (985)
Q Consensus 854 ~~a~--a~l~----~lg~eG---l~~~~~~~~~~a~~l~~~L~~g~------~l~~~----~--~-~~~~~~~~iv~~~~ 911 (985)
..++ .|+. ..+-.+ +....++..+++..+.+.|++.. .+... | . .+.....+.+.++.
T Consensus 332 l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~ 411 (464)
T PRK04311 332 LEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTP 411 (464)
T ss_pred HHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeC
Confidence 1111 1110 011111 22223556778888888887521 22211 0 0 01122344555542
Q ss_pred ccccCCCCHHHHHHHHHHCC--CccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 912 LKNTAGIEPEDVAKRLMDYG--FHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 912 ~~~~~g~~~~~v~~~L~~~G--i~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
.+.+..++.++|++.. |++. +. .+.+.+-+- ...++|++. +++.|++++
T Consensus 412 ----~~~~~~~l~~~lr~~~~~i~~r-~~---~~~~~ld~r-~~~~~~~~~--~~~~~~~~~ 462 (464)
T PRK04311 412 ----KDRSLEALAARLRLLPPPVIGR-IE---DGRLLLDLR-TLEEEDEER--LAAALLEAL 462 (464)
T ss_pred ----CCCCHHHHHHHHhcCCCCEEEE-EE---CCEEEEEeC-cCCHHHHHH--HHHHHHHHh
Confidence 2567899999998743 3331 21 356666552 345677777 666666654
No 420
>PRK06460 hypothetical protein; Provisional
Probab=99.59 E-value=5.6e-13 Score=153.22 Aligned_cols=214 Identities=21% Similarity=0.222 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchh
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKD 290 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~ 290 (985)
....++++.+|+++|.+. ...+.+|++++.+++.++ . ++||+||++...++.....+...++..|++++.++.++
T Consensus 45 p~~~~L~~~lA~l~g~~~--~v~~~sG~~ai~~~l~al-~--~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~~ 119 (376)
T PRK06460 45 PTVLELTKKIVELENAEM--GVAFSSGMGAISTTALAL-L--KPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGS 119 (376)
T ss_pred ccHHHHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHH-h--CCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECCCC
Confidence 345568899999999876 345677777666665554 2 38999999988886555555555667899999887642
Q ss_pred ---hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCC
Q 001989 291 ---IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMG 364 (985)
Q Consensus 291 ---l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~ 364 (985)
+++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....+.++|+||++.|. |+|++
T Consensus 120 ~~~l~~~~~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivD-ea~~~~~~~~~l~~~~divv~S~sK~l~G--- 195 (376)
T PRK06460 120 DNIIEKAKSKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVD-ATFSTPINQKPLELGADIVVHSASKFLAG--- 195 (376)
T ss_pred HHHHHHhcCCCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEE-CCcCccccCChhhcCCCEEEeecceeccC---
Confidence 344 5778999999998 78999999999999999999999995 34444433344568999999998 87752
Q ss_pred CCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHH
Q 001989 365 YGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLK 444 (985)
Q Consensus 365 ~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~ 444 (985)
.|+.-+|+++.++++.+++. ..++.. +++. ++. ..|+...+.+-++
T Consensus 196 ~~~~~~G~~~~~~~l~~~l~-------------------------~~~~~~---g~~~-~~~-----~a~~~l~~~~~l~ 241 (376)
T PRK06460 196 HNDVIAGLAAGYGKLLNVID-------------------------QMRRTL---GTSL-DPH-----AAYLTLRGIKTLK 241 (376)
T ss_pred CCCceEEEEecCHHHHHHHH-------------------------HHHHhc---CCCC-CHH-----HHHHHHhchhhHH
Confidence 22233688888777665441 000111 1111 111 1233445556678
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCe
Q 001989 445 TIAQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 445 ~i~~~~~~~a~~l~~~L~~~g~~ 467 (985)
.+.+++.+++.++++.|++.+.+
T Consensus 242 ~r~~~~~~n~~~l~~~L~~~p~v 264 (376)
T PRK06460 242 IRMDVINRNAEQIAEFLEGHPKV 264 (376)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCc
Confidence 88889999999999999987434
No 421
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=99.59 E-value=2.6e-13 Score=155.74 Aligned_cols=283 Identities=13% Similarity=0.108 Sum_probs=175.8
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCC-CEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHR-NVCIIPVSAHGTNPATAAMCGMKIVSVGTDA- 711 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~-~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~- 711 (985)
.++++.+++++|.+..++..++|++ +. .++++.+. .++ ++|+++++.++.+...++..|++++.+|.+.
T Consensus 62 ~~lr~~ia~~~~~~~~~I~~t~G~~~~l---~~~~~~~~-----~~g~~~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~ 133 (364)
T PRK04781 62 PGLRSALAALYGCAPEQLLIGRGSDEAI---DLLVRALC-----VPGRDAVLVTPPVFGMYAVCARLQNAPLVEVPLVDG 133 (364)
T ss_pred HHHHHHHHHHhCcChHHEEEeCCHHHHH---HHHHHHhc-----CCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCCC
Confidence 4678889999998876666665654 33 23333331 245 6899988766656666788999999999742
Q ss_pred -C-CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHH--cCCEEEEEccccccccCCCC----CCcc
Q 001989 712 -K-GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHD--NGGQVYMDGANMNAQVGLTS----PGYI 782 (985)
Q Consensus 712 -~-g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~--~galliVD~a~~~~~~~l~~----pg~~ 782 (985)
+ ..+|++++.+++. .+++++|++++|| ++|.+. +.+++.++++. .++++++|+++.. +..-.. ....
T Consensus 134 ~~~~~~d~~~l~~~~~--~~~~~lv~l~~p~NPTG~~~-~~~~~~~l~~~~~~~~~iI~Deay~~-f~~~~~~~~~~~~~ 209 (364)
T PRK04781 134 ADGFHADVPAIVAAAL--ASNAKLVFLCSPSNPAGSAI-ALDQIERALQALQGKALVVVDEAYGE-FSDVPSAVGLLARY 209 (364)
T ss_pred ccCCCcCHHHHHHHHh--ccCCeEEEEcCCCCCCCCCc-CHHHHHHHHHhCCCCcEEEEeCcchh-hcCCcchHHHHhhC
Confidence 2 4689999866553 1688999999994 799998 78888887765 3789999998741 111000 1111
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
.-=+++.|+.|+|++| |.++|++++++++.+.+.... ...++++ .++ .++..+|..
T Consensus 210 ~~vi~~~SfSK~~gl~----GlRvGy~v~~~~l~~~l~~~~--------------~~~~~~~--~~~----~~a~~~l~~ 265 (364)
T PRK04781 210 DNLAVLRTLSKAHALA----AARIGSLIANAELIAVLRRCQ--------------APYPVPT--PCA----ALAEQALSA 265 (364)
T ss_pred CCEEEEecChhhcccc----cceeeeeeCCHHHHHHHHhcc--------------CCCCCCH--HHH----HHHHHHHhc
Confidence 1125667788887554 789999999877765442110 0111211 111 112223321
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-C
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-W 939 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~ 939 (985)
-..+-+.+..++..++++++.+.|++ ++.... ++.+ .+ +.++++ +..++.+.|.++||.+.... +
T Consensus 266 ~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-p~~g-~f--~~~~~~--------~~~~~~~~l~~~gI~v~~~~~~ 333 (364)
T PRK04781 266 PALAVTARRVAEVRAERERLHAALAQLPGVRRVY-PSQG-NF--LLVRFD--------DAEAAFQALLAAGVVVRDQRAA 333 (364)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEC-CCCC-cE--EEEEcC--------CHHHHHHHHHHCCeEEeeCCCC
Confidence 11122334444566777888888876 222222 2222 22 345543 46788999999999875432 2
Q ss_pred -CCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 940 -PVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 940 -p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
...+++||++ .+.+|.++ ++++|+++
T Consensus 334 ~~~~~~~Ris~---~~~~~~~~--l~~al~~~ 360 (364)
T PRK04781 334 PRLSDALRITL---GTPEQNDR--VLAALQRT 360 (364)
T ss_pred CCCCCeEEEeC---CCHHHHHH--HHHHHHHH
Confidence 2357999998 57999999 66666654
No 422
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=99.58 E-value=1.5e-13 Score=158.17 Aligned_cols=210 Identities=19% Similarity=0.201 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
.+++++.++++.|.+. .+..++|.+++..++.++. .++|+|++++..|+..... ....|+++..++.
T Consensus 54 ~~~L~~~lA~l~g~~~-~i~~~sg~~Ai~~~l~~l~--------~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd~ 124 (386)
T PRK08045 54 RDVVQRALAELEGGAG-AVLTNTGMSAIHLVTTVFL--------KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQ 124 (386)
T ss_pred HHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHHHHc--------CCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeCC
Confidence 4578899999999654 4556677766644433321 4789999988877643322 2234567776652
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
.|+++++++++ ++|++|++++|+ ++|.+. |+++|.++||++|++++||+++..+ ....|-.+|+|+++
T Consensus 125 -----~d~e~l~~~l~---~~tklV~l~sP~NPtG~v~-di~~I~~ia~~~g~~vivDeay~~~--~~~~pl~~gaDivv 193 (386)
T PRK08045 125 -----GDEQALRAALA---EKPKLVLVESPSNPLLRVV-DIAKICHLAREAGAVSVVDNTFLSP--ALQNPLALGADLVL 193 (386)
T ss_pred -----CCHHHHHHhcc---cCCeEEEEECCCCCCCEec-CHHHHHHHHHHcCCEEEEECCCCcc--ccCCchhhCCCEEE
Confidence 58999999997 789999999995 799998 8999999999999999999997532 23466778999999
Q ss_pred eCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.|+||+++.+ ++-.+|+++++ +++.+.+.. . + ..++ .+. ++ ..+|..++ |-+.
T Consensus 194 ~S~tK~l~G~---~d~~~G~vi~~~~~~~~~l~~-~-----------~-~~~g-~~~----~p---~~~~l~~r--gl~t 247 (386)
T PRK08045 194 HSCTKYLNGH---SDVVAGVVIAKDPDVVTELAW-W-----------A-NNIG-VTG----GA---FDSYLLLR--GLRT 247 (386)
T ss_pred eecceeccCC---CCceeEEEEeCcHHHHHHHHH-H-----------H-HhcC-CCC----CH---HHHHHHHh--hhcc
Confidence 9999998511 11126777664 444332210 0 0 0011 111 11 22344433 4445
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 001989 868 LTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g 889 (985)
+..++++..+++..+++.|++.
T Consensus 248 l~~R~~~~~~na~~la~~L~~~ 269 (386)
T PRK08045 248 LVPRMELAQRNAQAIVKYLQTQ 269 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 7778888999999999999874
No 423
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=99.58 E-value=2.2e-13 Score=157.10 Aligned_cols=288 Identities=15% Similarity=0.150 Sum_probs=186.6
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---- 288 (985)
..++++.+|+++|.+. +..+.+||+++..++.++.. ++||+||++...|+++...+. ..|++++.+|.
T Consensus 35 ~~~le~~la~~~g~~~--~v~~~sgt~al~lal~al~~--~~Gd~Viv~~~~~~~~~~~~~----~~G~~~v~vd~~~~~ 106 (379)
T PRK11658 35 NQALEQAFCQLTGNQH--AIAVSSATAGMHITLMALGI--GPGDEVITPSLTWVSTLNMIV----LLGATPVMVDVDRDT 106 (379)
T ss_pred HHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHHHcCC--CCCCEEEECCCcHHHHHHHHH----HcCCEEEEEecCCCc
Confidence 4568899999999874 66788999887777766533 389999999999999987764 35888888764
Q ss_pred -----hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC---CCCcccceEEEecC-cc
Q 001989 289 -----KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK---PPGELGADIVVGSA-QR 358 (985)
Q Consensus 289 -----~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~---~~~~~GaDi~v~s~-k~ 358 (985)
+++++ ++++|++|+..+ .+|...|+++|.++|+++|+++++|+ ..++|... ..+.+|.|+..++. |.
T Consensus 107 ~~~d~~~l~~~i~~~tkav~~~~--~~G~~~d~~~i~~~a~~~gi~vi~D~-a~a~g~~~~~~~~g~~g~~~~Sf~~~K~ 183 (379)
T PRK11658 107 LMVTPEAIEAAITPRTKAIIPVH--YAGAPADLDAIRAIGERYGIPVIEDA-AHAVGTYYKGRHIGARGTAIFSFHAIKN 183 (379)
T ss_pred CCcCHHHHHHhcccCCeEEEEeC--CCCCcCCHHHHHHHHHHcCCeEEEEC-CCccCCeECCeecCCCCCEEEeCCCCCc
Confidence 34555 788899988666 48999999999999999999999953 44555432 35778888777776 66
Q ss_pred ccccCCCCCCcEEEEEEc-hhhHhcCCC-ceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHH
Q 001989 359 FGVPMGYGGPHAAFLATS-QEYKRMMPG-RIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAV 436 (985)
Q Consensus 359 lg~P~~~GGP~~G~l~~~-~~~~~~lp~-~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~ 436 (985)
+.+ |+ .|++.++ +++.+++.. +..|+..+.... + ......+..+.+.|+. .-+..+.|++-
T Consensus 184 l~~-----g~-GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~--~--~~~~~~~~~~~~~G~n-----~~~~~l~AAl~-- 246 (379)
T PRK11658 184 ITC-----AE-GGLVVTDDDELADRLRSLKFHGLGVDAFDR--Q--TQGRAPQAEVLTPGYK-----YNLADINAAIA-- 246 (379)
T ss_pred Ccc-----cC-ceEEEECCHHHHHHHHHHHHcCCCcchhhh--h--cccCCCcceeeccccc-----cCcCHHHHHHH--
Confidence 632 22 3556654 566554421 222322111000 0 0000111111123331 12234555552
Q ss_pred HhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc-CC--CC---cceEEEecC----C--HHHHHHHHHHcCceeeee--
Q 001989 437 YHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ-GL--PF---FDTVKVKCA----D--AHAIASAAYKIEMNLRVV-- 502 (985)
Q Consensus 437 ~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~-~~--~~---~~~~~~~~~----~--~~~v~~~L~~~GI~~~~~-- 502 (985)
+...++++++.++..++++++.+.|++++ +..+ .+ .. ...+++.++ + ..++.+.|.++||..+..
T Consensus 247 ~~ql~~l~~~~~~r~~~a~~~~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~gI~~~~~~~ 325 (379)
T PRK11658 247 LVQLAKLEALNARRREIAARYLQALADLP-FQPLSLPAWPHQHAWHLFIIRVDEERCGISRDALMEALKERGIGTGLHFR 325 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CccCcCCCCCCceeEEEEEEEECCccccCCHHHHHHHHHHCCCCCcccCc
Confidence 22236899999999999999999999886 4332 11 11 123444432 2 678999999999864310
Q ss_pred -----------------------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 -----------------------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -----------------------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
....+.+-++..-|+||+++.+++++.
T Consensus 326 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~ 375 (379)
T PRK11658 326 AAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQ 375 (379)
T ss_pred CcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 024466666777889999999988864
No 424
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.58 E-value=2.9e-13 Score=157.08 Aligned_cols=293 Identities=12% Similarity=0.073 Sum_probs=176.4
Q ss_pred hhhHHHHHHHHHHHHHHHhCC----Ccc-ceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCE--EEEcCCCCcccHHHHH
Q 001989 627 AQGYQEMFNNLGEWLCTITGF----DSF-SLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNV--CIIPVSAHGTNPATAA 698 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~----~~~-~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~--IIv~~~~Hg~~~~~a~ 698 (985)
.+|..++.+.+.+++.+.+|. +.. .+..++|++ +... +++.+. ++++. |+++++.+..+...++
T Consensus 63 ~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~---~~~~l~-----~~gd~~~vlv~~P~y~~~~~~~~ 134 (393)
T TIGR03538 63 TKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFA---FAQAVI-----NPGQAPLVVMPNPFYQIYEGAAL 134 (393)
T ss_pred CCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHH---HHHHHc-----CCCCcceEEecCCCCcchHHHHH
Confidence 357666666666666666554 333 455555544 4432 333322 35554 8889887777777788
Q ss_pred HCCcEEEEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc
Q 001989 699 MCGMKIVSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 699 ~~G~~vv~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~ 773 (985)
..|++++.+|++++ +.+|++++++++. +++++|++++| |++|.+. ..+++|.++|+++|+++++|.++..-.
T Consensus 135 ~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~ 211 (393)
T TIGR03538 135 LAGAEPYFLNCTAENGFLPDFDAVPESVW---RRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELY 211 (393)
T ss_pred hcCCeEEEeeccccCCCCCCHHHHHHHHh---hcceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcc
Confidence 89999999998643 5789999999987 68899999999 5799886 138899999999999999999874211
Q ss_pred -cC-CCCC------CccCC-----cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCC
Q 001989 774 -VG-LTSP------GYIGA-----DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG 840 (985)
Q Consensus 774 -~~-l~~p------g~~g~-----Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~ 840 (985)
.. ...+ ...+. -+++.|+.|.|++| |.++|++++++++...+.... .....
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~----GlRvG~~i~~~~l~~~~~~~~------------~~~~~ 275 (393)
T TIGR03538 212 FDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLP----GLRSGFVAGDAEILKAFLRYR------------TYHGC 275 (393)
T ss_pred cCCCCCCcCHHHhcccccccccccEEEEecchhhcCCc----ccceEEEecCHHHHHHHHHHH------------Hhhcc
Confidence 10 0000 01121 26778888877544 789999998876654332100 00000
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCH
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEP 920 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~ 920 (985)
.++ ...+. ++.+.+. ..+-+++..+...++.+.+.+.|++.+.+. .+.+..+ +.++++ .+.
T Consensus 276 ~~~--~~~q~----~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~--~p~gg~f--~~~~~~-------~~~ 336 (393)
T TIGR03538 276 AMP--IPTQL----ASIAAWN--DEQHVRENRALYREKFAAVLEILGQVLDLE--LPDAGFY--LWPKVP-------GDD 336 (393)
T ss_pred CcC--HHHHH----HHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHhhCccc--CCCeeEE--EEEECC-------CCH
Confidence 111 11111 1111121 223355555556777777888887643332 2222222 345543 246
Q ss_pred HHHHHHHH-HCCCccCC-CCC--------CCCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 921 EDVAKRLM-DYGFHGPT-MSW--------PVPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 921 ~~v~~~L~-~~Gi~~~~-~~~--------p~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
.+++++|. ++||.+.. ..| +..+++||++.. +.++++. .++.|++
T Consensus 337 ~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~--~~~~l~~--~l~~l~~ 391 (393)
T TIGR03538 337 EAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVA--PLEECVE--AAERIRS 391 (393)
T ss_pred HHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecC--CHHHHHH--HHHHHHH
Confidence 77888875 57998642 111 124789999864 5778777 5455443
No 425
>PRK06836 aspartate aminotransferase; Provisional
Probab=99.58 E-value=3e-13 Score=156.92 Aligned_cols=299 Identities=15% Similarity=0.158 Sum_probs=179.8
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Ccccee-cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFSLQ-PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~~~-~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
.|..++...+.+++....+. ++.++. .++++++...++ +.+. .++++|+++++.+..+...++..|+++
T Consensus 73 ~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~---~~l~-----~~gd~Vli~~p~~~~~~~~~~~~g~~v 144 (394)
T PRK06836 73 AGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVAL---KAIL-----NPGDEVIVFAPYFVEYRFYVDNHGGKL 144 (394)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHH---HHhc-----CCCCEEEEcCCCCccHHHHHHHcCCEE
Confidence 45544444444444443333 333444 444455543333 3221 367899999988877777778899999
Q ss_pred EEEcCCCC-CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHH------cCCEEEEEccccccc-
Q 001989 705 VSVGTDAK-GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHD------NGGQVYMDGANMNAQ- 773 (985)
Q Consensus 705 v~v~~d~~-g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~------~galliVD~a~~~~~- 773 (985)
+.+|++++ +.+|+++|+++++ +++++|++++| |++|.+. .++++|+++|++ +|+++++|+++..-.
T Consensus 145 ~~v~~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~ 221 (394)
T PRK06836 145 VVVPTDTDTFQPDLDALEAAIT---PKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVY 221 (394)
T ss_pred EEEecCCccCcCCHHHHHhhcC---cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccc
Confidence 99999766 7899999999997 78999999998 4799986 147888888998 899999999874211
Q ss_pred cCCCCC---CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCc---CCCCccccCCCCCCCCCCCCCCCCCCcch
Q 001989 774 VGLTSP---GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPF---LPSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 774 ~~l~~p---g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~---lp~~~~g~~~~~~~~~~~~~~~~i~s~~~ 847 (985)
.+-..+ ..+.-.+++.|++|.|+.| |-++|++++++.+.+. ....... . ...+..+.+..
T Consensus 222 ~~~~~~~~~~~~~~~i~~~S~SK~~~~p----GlRiG~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~ 287 (394)
T PRK06836 222 DGAEVPYIFKYYDNSIVVYSFSKSLSLP----GERIGYIAVNPEMEDADDLVAALVFA---------N-RILGFVNAPAL 287 (394)
T ss_pred CCCCCCChHHccCcEEEEecchhhccCc----ceeeEEEecCHHHhhhHHHHHHHHHH---------h-hccccccCCHH
Confidence 110001 1223357788999988544 5679999988654321 1000000 0 00001111111
Q ss_pred hhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHH
Q 001989 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~ 926 (985)
.+ .+.+ ..+. ++. ..+...++.+.+.+.|++ ++.+. .+.+.++ +.+.++ ..+..++++.
T Consensus 288 ~q-----~~~~--~~l~-~~~--~~~~~~~~r~~l~~~L~~~g~~~~--~~~gg~~--~~~~~~------~~~~~~~~~~ 347 (394)
T PRK06836 288 MQ-----RVVA--KCLD-ATV--DVSIYKRNRDLLYDGLTELGFECV--KPQGAFY--LFPKSP------EEDDVAFCEK 347 (394)
T ss_pred HH-----HHHH--HHhC-ChH--HHHHHHHHHHHHHHHHHhCCCEee--cCCceEE--EEEeCC------CCCHHHHHHH
Confidence 11 1111 1221 111 123345566778888876 43322 2222222 233443 2367788899
Q ss_pred HHHCCCccCCC-CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 927 LMDYGFHGPTM-SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 927 L~~~Gi~~~~~-~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
|.++|+.+... .|..++++||++. .++++++. .++.|++++++.+
T Consensus 348 l~~~gv~v~~g~~f~~~~~iRi~~~--~~~~~~~~--~i~~l~~~l~~~~ 393 (394)
T PRK06836 348 AKKHNLLLVPGSGFGCPGYFRLSYC--VDTETIER--SLPAFEKLAKEYK 393 (394)
T ss_pred HHhCCEEEECchhcCCCCeEEEEec--CCHHHHHH--HHHHHHHHHHHhc
Confidence 99999986542 2333589999997 47899999 7788888887543
No 426
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=99.58 E-value=1.3e-13 Score=158.51 Aligned_cols=209 Identities=19% Similarity=0.176 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH----HHHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP----ATAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~----~~a~~~G~~vv~v~~ 709 (985)
..++++.++++.|.+.+ +.++||+.|..+++ ++ . .++++||+++..|+... ..+...|++++.++.
T Consensus 52 ~~~Le~~la~l~g~~~a-l~~~SG~~Al~~~l-~~---l-----~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~ 121 (380)
T PRK06176 52 RFALEELIADLEGGVKG-FAFASGLAGIHAVF-SL---F-----QSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDT 121 (380)
T ss_pred HHHHHHHHHHHhCCCCE-EEECCHHHHHHHHH-HH---c-----CCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCC
Confidence 45788999999998765 55678887664322 21 1 37899999877555332 224567999988876
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++++++++ ++|++|++++|+ ++|.+. |+++|+++||++|+++++|+++.. +....|..+|+|+++
T Consensus 122 ~-----d~e~l~~ai~---~~t~lV~lesP~Nptg~~~-di~~I~~la~~~gi~vivD~t~a~--~~~~~p~~~gaDivv 190 (380)
T PRK06176 122 S-----DLSQIKKAIK---PNTKALYLETPSNPLLKIT-DLAQCASVAKDHGLLTIVDNTFAT--PYYQNPLLLGADIVV 190 (380)
T ss_pred C-----CHHHHHHhcC---cCceEEEEECCCCCCceec-CHHHHHHHHHHcCCEEEEECCccc--cccCCccccCCCEEE
Confidence 3 8999999997 789999999995 799998 899999999999999999998753 233457788999999
Q ss_pred eCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
+|++|+++.| +...+|++++++ ++...+... + ...+...+ + ..+| +...|.+.
T Consensus 191 ~S~tK~l~g~---~d~~gG~vv~~~~~~~~~~~~~------------~-~~~G~~~~-----~---~~~~--l~~~gl~t 244 (380)
T PRK06176 191 HSGTKYLGGH---SDVVAGLVTTNNEALAQEIAFF------------Q-NAIGGVLG-----P---QDSW--LLQRGIKT 244 (380)
T ss_pred ecCceeccCC---ccceeeEEEecHHHHHHHHHHH------------H-HHhcCCCC-----H---HHHH--HHHhccCc
Confidence 9999998522 112367777753 333322100 0 00111111 0 1233 33345556
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 001989 868 LTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g 889 (985)
+..+.++..+++..+.+.|++.
T Consensus 245 l~~R~~~~~~~a~~la~~L~~~ 266 (380)
T PRK06176 245 LGLRMEAHQKNALCVAEFLEKH 266 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 6777788888899999988863
No 427
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=99.58 E-value=1.8e-13 Score=140.80 Aligned_cols=304 Identities=15% Similarity=0.178 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC--C
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD--A 711 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d--~ 711 (985)
+..+.+.+++++|+|.+.+. ++.-+|-++++.++. .++|-|++...+|-+..-+++..|.+|..||.. +
T Consensus 63 I~~F~~dlaeFlg~D~~R~t-~GARe~KfavMhal~--------~~gd~vV~D~~aHYttyvAAEragl~v~eVp~tg~P 133 (382)
T COG1103 63 IKDFLEDLAEFLGMDEVRVT-AGAREAKFAVMHALC--------KEGDWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYP 133 (382)
T ss_pred HHHHHHHHHHHhCCceeeec-ccchhhHHHHHHHhc--------cCCCEEEEcCcchHHHHHHHHhcCCeEEecCCCCCC
Confidence 45666779999999986543 233345566655543 367889999999988888899999999999953 3
Q ss_pred CCCCCHHHHHHHHHhcC----CCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcE
Q 001989 712 KGNINIEELRKAAEANR----DNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADV 786 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~----~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di 786 (985)
+..+++|...+.|++.+ +..++..+++|. .+|.+. |.++++++|+++|+++++.+|+..+.... +-.+.|+|+
T Consensus 134 ey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~-Dakkva~ic~e~gvPlllN~AYt~Grmpv-s~ke~g~DF 211 (382)
T COG1103 134 EYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLA-DAKKVAKICREYGVPLLLNCAYTVGRMPV-SGKEIGADF 211 (382)
T ss_pred ceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCch-hhHHHHHHHHHcCCceEeecceeeccccc-cccccCCCE
Confidence 47899999888886432 346788889985 689997 99999999999999999999986544332 345779999
Q ss_pred EEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCC-CCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQ-PLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~-~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
+++|+||+++. .|| +|++..++++.+..-.+. |.. .. .++- ..+ |+. .|.+.....| .+-.. .
T Consensus 212 iVgSGHKsmAA----s~P-iGvl~~~eE~ae~V~r~S-g~~---~~-~KEvellG--CT~-rGapivTlmA--SfP~V-~ 275 (382)
T COG1103 212 IVGSGHKSMAA----SAP-IGVLAMSEEWAEIVLRRS-GRA---FP-KKEVELLG--CTV-RGAPIVTLMA--SFPHV-V 275 (382)
T ss_pred EEecCccchhc----cCC-eeEEeehhHHHHHHHhhc-ccc---cc-cceeeeec--ccc-cCchHHHHHh--cCHHH-H
Confidence 99999999864 244 788999987765431111 100 00 0110 111 221 2333222211 11111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEE-EEEecCc---cccCCCCHHHHHHHHHHCCCccCCCCC
Q 001989 866 KGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEF-IVDLRGL---KNTAGIEPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~-iv~~~~~---~~~~g~~~~~v~~~L~~~Gi~~~~~~~ 939 (985)
+- .+.++.-.++++|+.++|++ |+..+ |. .|..|.. -+..+.| .+.......-+.+.|.++||+.- ..
T Consensus 276 eR-VkrWdeEv~kaR~fv~elEkigg~~ql--G~-rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~ELK~RgI~GI--~~ 349 (382)
T COG1103 276 ER-VKRWDEEVEKARWFVAELEKIGGVKQL--GE-RPKNHDLMKFETPVFHEIAKKHKRKGYFLYEELKKRGIHGI--QP 349 (382)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHhhhHHHh--CC-CCcccceeeecCchHHHHHHhCcCCceeeHHHHHhcCcccc--cc
Confidence 11 22344567889999999987 34332 21 1222322 1222211 00001123345667888887742 11
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 940 PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 940 p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.....+.+| +.--++|+++. .++++++++++
T Consensus 350 G~Tk~~K~s-vyGl~~Eqve~--V~~afkeI~ek 380 (382)
T COG1103 350 GQTKYFKLS-VYGLSWEQVEY--VVDAFKEIAEK 380 (382)
T ss_pred CceeEEEEE-eecCCHHHHHH--HHHHHHHHHHh
Confidence 122456665 35678999999 88999999875
No 428
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=99.58 E-value=7e-13 Score=152.86 Aligned_cols=280 Identities=16% Similarity=0.177 Sum_probs=170.4
Q ss_pred HHHHHHHHh-CCCc-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCcEEE------EE
Q 001989 637 LGEWLCTIT-GFDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGMKIV------SV 707 (985)
Q Consensus 637 ~~~~la~l~-G~~~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~~vv------~v 707 (985)
+++.+++.+ +.+. ..++++||+++++++++.+|.+ .++++||+ ...+||+........|.+.. .+
T Consensus 71 ~~~~la~~l~~~~~~~~~~~~SGseA~~~Al~~ar~~------~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~ 144 (375)
T PRK04260 71 LQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIARKA------TGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGV 144 (375)
T ss_pred HHHHHHHHHhcCcCCEEEEcCccHHHHHHHHHHHHHh------cCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCC
Confidence 344455443 2222 3467799999998888888765 23456666 56789876555433222110 00
Q ss_pred cCCCC-CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCC--
Q 001989 708 GTDAK-GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSPG-- 780 (985)
Q Consensus 708 ~~d~~-g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~pg-- 780 (985)
+.... -..|+++++++++ +++++|+++.++ ..|++.++ +++|.++|+++|+++++|+++. +++.-..+.
T Consensus 145 ~~~~~~~~~dl~~l~~~l~---~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~-g~g~~g~~~~~ 220 (375)
T PRK04260 145 PHFSYAIFNDLNSVKALVN---KNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQT-GMGRTGKLYAF 220 (375)
T ss_pred CCeEEeCCCCHHHHHHhcC---CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcccchhhh
Confidence 00000 1248999999886 688899998774 67887632 8999999999999999999973 332111110
Q ss_pred -c--cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHH
Q 001989 781 -Y--IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISY 857 (985)
Q Consensus 781 -~--~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~ 857 (985)
. ..+|+++ +.|.|+ +|-.+|++++++++.+.+.... ..+++.++++.++++.
T Consensus 221 ~~~~~~pdi~t--~sK~l~-----~G~~ig~~~~~~~~~~~~~~~~------------------~~~t~~~~~~~~~aa~ 275 (375)
T PRK04260 221 EHYGIEPDIFT--LAKGLA-----NGVPVGAMLAKSSLGGAFGYGS------------------HGSTFGGNKLSMAAAS 275 (375)
T ss_pred HhhCCCCCEEE--eccccc-----CCcceEEEEEcHHHHhhcCCCC------------------CCCCCCcCHHHHHHHH
Confidence 1 2367764 458774 2445888888887655442110 0011223455566667
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CC-e-eecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 858 TYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YP-I-LFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 858 a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~-l-~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
+.|..+..+++. ++..++.+++++.|.+. .+ + ...+ .+ .+ +.+.+. .+..++.++|.++|+
T Consensus 276 a~l~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~g-~~--~~~~~~-------~~~~~~~~~l~~~Gi 341 (375)
T PRK04260 276 ATLDIMLTAGFL---EQALENGNYLQEQLQKALQDKETVTTVRG-LG-YM--IGIETT-------ADLSQLVEAARDKGL 341 (375)
T ss_pred HHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHhhCCCeeEEec-cc-eE--EEEEec-------CcHHHHHHHHHhCCC
Confidence 777776554443 34455556666666441 11 1 1111 11 11 233332 256789999999999
Q ss_pred ccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 933 HGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 933 ~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
.+.... .+.+|++++...+++||++ +++.++++
T Consensus 342 ~v~~~~---~~~lR~~~~~~~t~~~i~~--~l~~l~~~ 374 (375)
T PRK04260 342 IVLTAG---TNVIRLLPPLTLTKEEIEQ--GIAILSEV 374 (375)
T ss_pred EEecCC---CCEEEEcCCCccCHHHHHH--HHHHHHHh
Confidence 874332 3789999999999999999 66777654
No 429
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=99.58 E-value=4.9e-13 Score=153.96 Aligned_cols=273 Identities=15% Similarity=0.115 Sum_probs=181.5
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|++.|.+ .+.++.||++++..++.++ . ++||+|++++..|++....+..++...++++..++. ++
T Consensus 55 ~~L~~~lA~l~g~~--~~i~~~sg~~Ai~~~l~~l-~--~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd~~d~e~ 129 (386)
T PRK08045 55 DVVQRALAELEGGA--GAVLTNTGMSAIHLVTTVF-L--KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQA 129 (386)
T ss_pred HHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHH-c--CCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeCCCCHHH
Confidence 35778999999965 4888899998877766654 2 389999999999998888777666666778887653 55
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++.+| |++|.+.|+++|.++||++|++++|| +.++.+....|-++|+|+++.|. |+++++- +
T Consensus 130 l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivD-eay~~~~~~~pl~~gaDivv~S~tK~l~G~~---d 205 (386)
T PRK08045 130 LRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVD-NTFLSPALQNPLALGADLVLHSCTKYLNGHS---D 205 (386)
T ss_pred HHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEE-CCCCccccCCchhhCCCEEEeecceeccCCC---C
Confidence 666 7788999999998 78999999999999999999999994 34455555667789999999998 7775431 1
Q ss_pred CcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 368 PHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 368 P~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
--.|++.++ +++.+++- +.+....+|. +++ ..|+...|-+-+..+
T Consensus 206 ~~~G~vi~~~~~~~~~l~----------------------------~~~~~~g~~~-~p~-----~~~l~~rgl~tl~~R 251 (386)
T PRK08045 206 VVAGVVIAKDPDVVTELA----------------------------WWANNIGVTG-GAF-----DSYLLLRGLRTLVPR 251 (386)
T ss_pred ceeEEEEeCcHHHHHHHH----------------------------HHHHhcCCCC-CHH-----HHHHHHhhhccHHHH
Confidence 114566553 44433320 0000011111 111 123455555667888
Q ss_pred HHHHHHHHHHHHHHHhcCCCeE-EcCC-----C-----------CcceEEEecCC----HHHHHHHHHHc--Cceee---
Q 001989 447 AQRVHGLAGTFALGLKKLGTVE-VQGL-----P-----------FFDTVKVKCAD----AHAIASAAYKI--EMNLR--- 500 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~-~~~~-----~-----------~~~~~~~~~~~----~~~v~~~L~~~--GI~~~--- 500 (985)
.++..+++..+++.|++.+.++ +.-+ | +..-|+|.+++ +.++.+.|.-- +..+.
T Consensus 252 ~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~ 331 (386)
T PRK08045 252 MELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVE 331 (386)
T ss_pred HHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhccceeEeccCCCCc
Confidence 8999999999999999885454 3211 1 11246676654 33444444321 21110
Q ss_pred -----e-----------------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 501 -----V-----------------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 501 -----~-----------------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+ +.++.||+|++.-+.++=|+.|.++|..
T Consensus 332 sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGlE~~~dl~~dl~~al~~ 382 (386)
T PRK08045 332 SLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRA 382 (386)
T ss_pred eeEeCCCCcccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHH
Confidence 0 1146799999987666656777777753
No 430
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=99.58 E-value=2.7e-13 Score=153.49 Aligned_cols=263 Identities=16% Similarity=0.131 Sum_probs=165.5
Q ss_pred HHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGN 714 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~ 714 (985)
.++++++++++|.+...+..++|++..+..+ ++. . .++ +|+++++.|..+...++..|++++.++
T Consensus 50 ~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~--~~~-l-----~~g-~vl~~~p~y~~~~~~~~~~g~~~~~~~------ 114 (330)
T TIGR01140 50 DELRAAAAAYYGLPAASVLPVNGAQEAIYLL--PRL-L-----APG-RVLVLAPTYSEYARAWRAAGHEVVELP------ 114 (330)
T ss_pred HHHHHHHHHHhCCChhhEEECCCHHHHHHHH--HHH-h-----CCC-eEEEeCCCcHHHHHHHHHcCCEEEEeC------
Confidence 4788999999998765665656655222222 222 1 245 588887777677777788999998887
Q ss_pred CCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCC----CccCCcE
Q 001989 715 INIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSP----GYIGADV 786 (985)
Q Consensus 715 iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~p----g~~g~Di 786 (985)
|+++++++++ ++++|++++| |++|.+. + +++|+++|+++|+++++|.++....... .. ...+.++
T Consensus 115 -d~~~l~~~~~----~~~~v~i~~p~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~i 187 (330)
T TIGR01140 115 -DLDRLPAALE----ELDVLVLCNPNNPTGRLI-PPETLLALAARLRARGGWLVVDEAFIDFTPDA-SLAPQAARFPGLV 187 (330)
T ss_pred -CHHHHHhhcc----cCCEEEEeCCCCCCCCCC-CHHHHHHHHHHhHhcCCEEEEECcccccCCcc-chhhHhccCCCEE
Confidence 7899998884 4668888998 5799987 5 7778888899999999999874211110 11 1124568
Q ss_pred EEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
++.|++|+|+.| |-++|++++++++...+.... ...+++ .....++..++. ..
T Consensus 188 ~~~S~SK~~g~~----G~R~G~i~~~~~~~~~l~~~~--------------~~~~~s------~~~q~~~~~~l~---~~ 240 (330)
T TIGR01140 188 VLRSLTKFFGLA----GLRLGFVVAHPALLARLREAL--------------GPWTVN------GPARAAGRAALA---DT 240 (330)
T ss_pred EEEecchhhcCc----hhhhhheeCCHHHHHHHHhcC--------------CCCCch------HHHHHHHHHHHh---ch
Confidence 899999998543 456899999887665443210 001111 111222223332 22
Q ss_pred HH-HHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC-CCCC--CC
Q 001989 867 GL-TEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT-MSWP--VP 942 (985)
Q Consensus 867 Gl-~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~-~~~p--~~ 942 (985)
++ ++..++...+.+++.+.|++...+...+. ...+ +.+.++ +..++.++|.++||.+.. ..|+ ..
T Consensus 241 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~f--~~~~~~--------~~~~l~~~l~~~gi~v~pg~~f~~~~~ 309 (330)
T TIGR01140 241 AWQAATRARLAAERARLAALLARLGGLEVVGG-TALF--LLVRTP--------DAAALHEALARRGILIRDFDNFPGLDP 309 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCceECCC-CCeE--EEEEcC--------CHHHHHHHHHHCCEEEEECCCCCCCCC
Confidence 33 44455677788888888887221222222 2222 334443 357899999999998654 3343 23
Q ss_pred CEEEEeccCCCCHHHHHH
Q 001989 943 GTLMIEPTESESKSWTGI 960 (985)
Q Consensus 943 ~~lris~t~~~t~eeId~ 960 (985)
+++||+++.. .++ ++
T Consensus 310 ~~iRi~~~~~--~~~-~~ 324 (330)
T TIGR01140 310 RYLRFALPTD--EEN-DR 324 (330)
T ss_pred CEEEEEecCH--HHH-HH
Confidence 6899998532 244 77
No 431
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.58 E-value=7.4e-13 Score=154.36 Aligned_cols=310 Identities=12% Similarity=0.096 Sum_probs=179.5
Q ss_pred hhHHHHHHHHHHHHHHHhCC--CccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+.+.+++.+..|. +...+..++|++ +. .++++.+. .++++|+++.+.+..+...++..|+++
T Consensus 74 ~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al---~~~~~~l~-----~~gd~v~v~~P~y~~~~~~~~~~g~~~ 145 (409)
T PLN00143 74 GGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAA---EIIIKVLA-----RPEANILLPRPGFPDVETYAIFHHLEI 145 (409)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHH---HHHHHHHc-----CCCCEEEEcCCCCcCHHHHHHHcCCEE
Confidence 56555555555555544443 334555555544 44 33333332 478899999988877777788999999
Q ss_pred EEEcCC--CCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccc-ccCCC-
Q 001989 705 VSVGTD--AKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNA-QVGLT- 777 (985)
Q Consensus 705 v~v~~d--~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~-~~~l~- 777 (985)
+.++.+ .++.+|+++|+++++ ++++++++++| |++|.+. ..+++|.++|+++|+++++|.++..- ..+-.
T Consensus 146 ~~~~~~~~~~~~~d~~~l~~~~~---~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~ 222 (409)
T PLN00143 146 RHFDLLPEKGWEVDLDAVEAIAD---ENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPF 222 (409)
T ss_pred EEEeccCCCCCcCCHHHHHHhcc---cCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCC
Confidence 999874 235799999999886 67889999999 5799986 13788899999999999999987421 11100
Q ss_pred CC-CccC---CcEEEeCCcccccccCCCCCCceEEEEEc-c-cccCcCC--CCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 778 SP-GYIG---ADVCHLNLHKTFCIPHGGGGPGMGPIGVK-K-HLAPFLP--SHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 778 ~p-g~~g---~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~-~l~~~lp--~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
.+ ..+. -=+++.|+.|.|++| |.++|++++. + .+.+.+. ..+ . ........++ ...+
T Consensus 223 ~~~~~~~~~~~vi~~~SfSK~f~~p----GlRvG~~v~~~p~~~~~~~~~~~~~-~---------~~~~~~~~~~-~~~q 287 (409)
T PLN00143 223 VPMGLFASIVPVITLGSISKRWMIP----GWGLGWLVTCDPSGLLQICEIADSI-K---------KALNPAPFPP-TFIQ 287 (409)
T ss_pred cchhhhcccCcEEEEccchhhcCCC----ccceEEEEeeCchhhhhhHHHHHHH-H---------HHHhccCCCC-chHH
Confidence 11 1111 125677888887654 7899999983 3 2321110 000 0 0000001111 1111
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc-CCeeecCCCCceeeEEEEEecCccccCCC-CHHHHHHHH
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH-YPILFRGVNGTVAHEFIVDLRGLKNTAGI-EPEDVAKRL 927 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g-~~l~~~~~~~~~~~~~iv~~~~~~~~~g~-~~~~v~~~L 927 (985)
.++..+|..-..+-+++..++..++.+++.+.|++. .......+.+..+ +.++++.... .+. +..+++..|
T Consensus 288 ----~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~f--~w~~l~~~~~-~~~~~~~~~~~~l 360 (409)
T PLN00143 288 ----AAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFF--ALVKLNLLLL-EDIEDDMEFCLKL 360 (409)
T ss_pred ----HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEE--EEEecchhhc-CCCCCHHHHHHHH
Confidence 111222321112334555556666677788888762 1111112222222 3455531000 011 355666554
Q ss_pred -HHCCCccCC-CCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 928 -MDYGFHGPT-MSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 928 -~~~Gi~~~~-~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.++|+.+.. ..|..++++||++. .+.+++++ .++.|++.+++.
T Consensus 361 l~~~gV~v~pg~~f~~~~~iRi~~~--~~~~~l~~--al~rl~~~l~~~ 405 (409)
T PLN00143 361 AKEESLIILPGVTVGLKNWLRITFA--VEQSSLED--GLGRLKSFCGRH 405 (409)
T ss_pred HHhCCEEEeCccccCCCCeEEEEEc--CCHHHHHH--HHHHHHHHHHHh
Confidence 678998643 23444689999997 45888888 777788777643
No 432
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=99.58 E-value=5.5e-14 Score=162.36 Aligned_cols=209 Identities=20% Similarity=0.229 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+.+ +.+++|++|+.++++++. +++|+||+++..|+.... .+...|++++.+++
T Consensus 63 ~~~le~~la~l~g~~~~-v~~ssG~~Ai~~al~al~--------~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 133 (390)
T PRK08133 63 VTMFQERLAALEGAEAC-VATASGMAAILAVVMALL--------QAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDL 133 (390)
T ss_pred HHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECC
Confidence 56789999999998764 556778877755554432 367899998887765433 24568999999987
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++.. +....|..+|+|+++
T Consensus 134 ~-----d~~~l~~~i~---~~tklV~ie~p~NptG~v~-dl~~I~~la~~~gi~livD~t~~~--~~~~~pl~~g~Divv 202 (390)
T PRK08133 134 T-----DLDAWRAAVR---PNTKLFFLETPSNPLTELA-DIAALAEIAHAAGALLVVDNCFCT--PALQQPLKLGADVVI 202 (390)
T ss_pred C-----CHHHHHHhcC---cCCeEEEEECCCCCCCCcC-CHHHHHHHHHHcCCEEEEECCCcc--cccCCchhhCCcEEE
Confidence 4 8999999997 88999999998 5799998 899999999999999999998742 223456678999999
Q ss_pred eCCcccccccCCCCCCc-eEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPG-MGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg-~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.|+||+++. .|.. +|+++.+++....+.... + ..+...+ + ..+|..+ .|.+.
T Consensus 203 ~S~sK~~~g----~g~~~GG~vv~~~~~~~~~~~~~-----------~--~~g~~~~-----~---~~a~~~l--~gl~t 255 (390)
T PRK08133 203 HSATKYLDG----QGRVLGGAVVGSKELMEEVFGFL-----------R--TAGPTLS-----P---FNAWVFL--KGLET 255 (390)
T ss_pred eecceeecC----CcceEeEEEEcCHHHHHHHHHHH-----------H--HhCCCCC-----H---HHHHHHH--cccch
Confidence 999999852 2333 367777665433221000 0 0111111 1 1233333 34456
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 001989 868 LTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g 889 (985)
+..+.++..+++..+.+.|++.
T Consensus 256 l~~R~~~~~~~a~~la~~L~~~ 277 (390)
T PRK08133 256 LSLRMEAHSANALALAEWLEAH 277 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 7777788889999999999863
No 433
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=99.57 E-value=5.6e-14 Score=162.62 Aligned_cols=210 Identities=18% Similarity=0.166 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCccc-H---HHHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN-P---ATAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~-~---~~a~~~G~~vv~v~~ 709 (985)
.+++++.++++.|.+. .+.+++|+.|+.+++.++. .++|+||++...|+.. . ..++..|++++.++.
T Consensus 72 ~~~le~~lA~l~g~~~-al~~~sG~~Ai~~~l~all--------~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~ 142 (403)
T PRK07810 72 VSMFEERLRLIEGAEA-CFATASGMSAVFTALGALL--------GAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDG 142 (403)
T ss_pred HHHHHHHHHHHhCCCc-EEEECChHHHHHHHHHHHh--------CCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECC
Confidence 4578999999999875 4566788877755544432 3788999988666543 2 224568999999986
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++++++++ ++|++|++++|+ ++|.+. |+++|+++||++|++++||+++.. +....|..+|+|+++
T Consensus 143 ~-----d~~~l~~ai~---~~tklV~~esp~Nptg~v~-dl~~I~~la~~~g~~vivD~a~a~--~~~~~~~~~gaDivv 211 (403)
T PRK07810 143 E-----DLSQWEEALS---VPTQAVFFETPSNPMQSLV-DIAAVSELAHAAGAKVVLDNVFAT--PLLQRGLPLGADVVV 211 (403)
T ss_pred C-----CHHHHHHhcC---cCceEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCCc--cccCChhhcCCcEEE
Confidence 3 8999999997 789999999994 799887 899999999999999999999753 223456678999999
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccC-cCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAP-FLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~-~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
+|++|+++.+ |..-+|+++++++... .+.... + .++...+ + ..+|..++ +-+-
T Consensus 212 ~S~tK~l~g~---g~~~gG~v~~~~~~~~~~l~~~~-----------~--~~g~~~s-----~---~~a~l~l~--~L~t 265 (403)
T PRK07810 212 YSGTKHIDGQ---GRVLGGAILGDREYIDGPVQKLM-----------R--HTGPALS-----A---FNAWVLLK--GLET 265 (403)
T ss_pred ccCCceecCC---cCceeEEEEeChHHHHHHHHHHH-----------H--HhCCCCC-----H---HHHHHHHh--ccCc
Confidence 9999998521 1112588887765332 121000 0 0111111 1 12333333 4455
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 001989 868 LTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g 889 (985)
+..+.++..+++..+.+.|++.
T Consensus 266 l~~R~~~~~~~a~~~a~~L~~~ 287 (403)
T PRK07810 266 LALRVRHSNASALRIAEFLEGH 287 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 6777888899999999999863
No 434
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=99.57 E-value=2.5e-13 Score=155.33 Aligned_cols=322 Identities=16% Similarity=0.172 Sum_probs=187.5
Q ss_pred CCcc-ccCCCCCCCCCCCCCHHHHHHHHHHHhcCCC-ccc--eecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHh
Q 001989 131 PKSI-RIDSMKFSKFDEGLTESQMIEHMQKLASMNK-VYK--SFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIA 206 (985)
Q Consensus 131 p~~~-~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~-~~~--~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~s 206 (985)
|+++ ..-+..+| .++.+..++++.+++...... .+. .|.|--.-+.-.+..+.+.+.. ...-+.+..+.+
T Consensus 1 P~~l~~~~~~~lp--~~~~~~~~vl~~~~~~l~~~~~~~~~P~~~~~~~~~~~~~~i~~~~l~~----~~n~n~~~~~~~ 74 (373)
T PF00282_consen 1 PGELRARLDEELP--EEGESLEEVLKDLREILAPGVTHWHHPRFFGFVPGGPSPASILADLLAS----ALNQNGFTWEAS 74 (373)
T ss_dssp TTSSGGGCHCCHH--SSHH-HHHHHHHHHHHTHGCS-TTTSTTBESSSHT--CHHHHHHHHHHH----HHT-BTTSTTTS
T ss_pred ChhhhhcCccccc--cCCCCHHHHHHHHHHHhhccCCCCCChhHhhhccCCccHHHHHHHHHHh----hhcccccccccc
Confidence 4444 22235666 456689999999987644332 221 2322111111122223322221 011123334556
Q ss_pred hhHHHHHHHHHHHHHHhcCCCC-------cceeeccchHHHHHHHHHHhhhh-------cC----CCCEEEEcCCCChhH
Q 001989 207 QGRLESLLNFQTMIADLTGLPM-------SNASLLDEGTAAAEAMAMCNNIQ-------KG----KKKTFIIASNCHPQT 268 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~-------~~~sl~~~~ta~~ea~~~a~~~~-------~~----~g~~Vlv~~~~H~s~ 268 (985)
....+...+.-.++++|+|.+. +...+++|||.+...++++.|-. .+ ++-.|++++..|.|+
T Consensus 75 P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~ 154 (373)
T PF00282_consen 75 PAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSI 154 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THH
T ss_pred cccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHH
Confidence 6667777888899999999993 34678888886555444433211 11 223688999999999
Q ss_pred HHHHHHhhcCCCeEEEEeCch--------hhhc-c-----CCCEe-EEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEE
Q 001989 269 IDICITRADGFDIKVVVSDLK--------DIDY-K-----SGDVC-GVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMA 332 (985)
Q Consensus 269 ~~~~~~~a~~~gi~v~~v~~~--------~l~~-l-----~~~t~-~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~ 332 (985)
.+.+.- .|+.++.|+.+ +|++ + ...+. +|+.+.+ +.+|.++|+++|+++|++++++++||
T Consensus 155 ~Kaa~~----lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVD 230 (373)
T PF00282_consen 155 EKAARI----LGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVD 230 (373)
T ss_dssp HHHHHH----TTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEE
T ss_pred HHhcce----eeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeeeec
Confidence 998764 46667777653 4554 3 12233 5666776 57999999999999999999999996
Q ss_pred ecCccccCCCC------CCcccceEEEecC-ccccccCCCCCCcEEEEEEchh-hHh-cC--CCceeeeeecCCCCccee
Q 001989 333 TDLLALTILKP------PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQE-YKR-MM--PGRIVGVSIDSSGKPALR 401 (985)
Q Consensus 333 a~~~~lg~l~~------~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~-~~~-~l--p~~~vG~t~d~~g~~~~~ 401 (985)
+-.-+..++.+ .+--+||-+..+. |+++.|+. +|++.+|++ .++ .+ .+.+++-. +.+....+
T Consensus 231 aA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~-----~~~~l~r~~~~l~~~~~~~~~Yl~~~-~~~~~~~~- 303 (373)
T PF00282_consen 231 AAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYG-----CGVLLVRDKSDLRDAFSINADYLGND-DRESDESY- 303 (373)
T ss_dssp ETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS------EEEEESSGGGHHGGGEEEETCTT-S--SSS-GGG-
T ss_pred ccccccccccccccccccccccccccccchhhhhcCCcc-----ceeEEeecccchHHHhccChhhhccc-cccccccc-
Confidence 52222112211 1224689999999 77777865 567878764 332 22 11111100 00000000
Q ss_pred eecccccccccccccCC-CccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEE
Q 001989 402 VAMQTREQHIRRDKATS-NICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKV 480 (985)
Q Consensus 402 l~l~tre~~irre~ats-ni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~ 480 (985)
..++. --|| ....++..-+.+..+|.+|++++.++..+++++++++|++.++++++.++.++.|+|
T Consensus 304 ------------~~~~~tl~~S-R~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~~~vcF 370 (373)
T PF00282_consen 304 ------------DYGDYTLQGS-RRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDLNIVCF 370 (373)
T ss_dssp ------------CEEEGSSSSS-GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSSSEEEE
T ss_pred ------------cccccccccc-ccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCceEEEE
Confidence 01111 1122 233344444446889999999999999999999999999997699998888888888
Q ss_pred ec
Q 001989 481 KC 482 (985)
Q Consensus 481 ~~ 482 (985)
+.
T Consensus 371 r~ 372 (373)
T PF00282_consen 371 RY 372 (373)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 435
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=99.57 E-value=7.4e-14 Score=160.87 Aligned_cols=208 Identities=18% Similarity=0.220 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+.+ +..+||+.|+.+++.++. +++++||++...|+.... .+...|++++.++.
T Consensus 56 ~~~le~~la~l~g~~~~-~~~~sG~~Ai~~al~al~--------~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~ 126 (380)
T TIGR01325 56 VAAFEERIAALEGAERA-VATATGMSAIQAALMTLL--------QAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDP 126 (380)
T ss_pred HHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECC
Confidence 45788999999998754 556788887766655442 367899998877765432 34568999999987
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++++++++ +++++|++++|+ ++|.+. |+++|+++||++|++++||+++... ....|..+|+|+++
T Consensus 127 ~-----d~~~l~~~i~---~~tklV~le~p~np~g~~~-dl~~I~~la~~~gi~livD~a~~~~--~~~~pl~~g~Divv 195 (380)
T TIGR01325 127 T-----DLNAWEAAVK---PNTKLVFVETPSNPLGELV-DIAALAELAHAIGALLVVDNVFATP--VLQQPLKLGADVVV 195 (380)
T ss_pred C-----CHHHHHHhcC---CCceEEEEECCCCCCCeee-CHHHHHHHHHHcCCEEEEECCCccc--ccCCchhhCCCEEE
Confidence 4 8999999987 789999999994 689998 9999999999999999999997432 23356678999999
Q ss_pred eCCcccccccCCCCCC-ceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGP-GMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGP-g~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.|++|+++. +|- .+|+++.++++.+.+.... + ..+...+ +. .+|..+ .+.+.
T Consensus 196 ~S~sK~l~g----~g~~~gG~vv~~~~~~~~l~~~~-----------~--~~g~~~~-----p~---~a~~~l--~~l~t 248 (380)
T TIGR01325 196 YSATKHIDG----QGRVMGGVIAGSEELMAEVAVYL-----------R--HTGPAMS-----PF---NAWVLL--KGLET 248 (380)
T ss_pred eeccceecC----CCCeEEEEEEeCHHHHHHHHHHH-----------H--hhCCCCC-----HH---HHHHHH--hccCc
Confidence 999999852 122 2477877766544332100 0 0111111 11 123333 34455
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 001989 868 LTEASKIAILNANYMAKRLEK 888 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~ 888 (985)
+..+.++..+++.++.+.|++
T Consensus 249 l~~r~~~~~~~a~~la~~L~~ 269 (380)
T TIGR01325 249 LSLRMQKQFDSALAIAEWLQA 269 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 666777888899999999986
No 436
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=99.57 E-value=1.3e-13 Score=159.00 Aligned_cols=280 Identities=14% Similarity=0.126 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-- 288 (985)
..+.|+|+..|+++|++.+++ +++|.|++..++.+|.. ++||+||+++++|.|+...+-. .|...+++.+
T Consensus 70 G~i~eAqe~aA~~fgAd~tyF-vvNGTS~ank~vi~a~~---~~GD~VLvdRN~HKSi~~glil----aGa~Pvyl~p~~ 141 (557)
T COG1982 70 GPIKEAQELAARVFGADHTYF-VVNGTSTANKAVINAVL---TPGDKVLVDRNCHKSIHHGLIL----AGATPVYLEPSR 141 (557)
T ss_pred ccHHHHHHHHHHHhCCCceEE-EECCccHHHHHHHHhhc---CCCCEEEecCCccHHHHHHHHH----cCCceEEecCCC
Confidence 467899999999999998766 56777888888888763 3899999999999999998642 4777777643
Q ss_pred ------------hhhhc--c-CCCE-eEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEE-ecCcc---ccCCCC-CCcc
Q 001989 289 ------------KDIDY--K-SGDV-CGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMA-TDLLA---LTILKP-PGEL 347 (985)
Q Consensus 289 ------------~~l~~--l-~~~t-~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~-a~~~~---lg~l~~-~~~~ 347 (985)
+.+++ + .++. +++++|+|+|+|++-|+++|.+.+|..++++.|+ +++.- .+.+.. ..+.
T Consensus 142 np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~ 221 (557)
T COG1982 142 NPLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNG 221 (557)
T ss_pred CccccccCCCCHHHHHHHHHhChhhheeEEEecCccceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhc
Confidence 23433 2 3456 8999999999999999999999999999999993 22211 122222 2348
Q ss_pred cceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHH
Q 001989 348 GADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALL 427 (985)
Q Consensus 348 GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~ 427 (985)
|+|+++.|.||...-+. .+.++++++. +.+.- ++ -+..|.+ .-|+++.+
T Consensus 222 ~~~~~tqS~HK~l~alS----QaS~iHv~~~--~~~~~-------~r-~nea~~~-----------------h~STSPsY 270 (557)
T COG1982 222 GADFVTQSTHKLLAALS----QASMIHVKDG--RAVNH-------ER-FNEALMM-----------------HQSTSPSY 270 (557)
T ss_pred CceEEEechhhhhhhhh----hhHHHhhCCC--ccCCH-------HH-HHHHHHH-----------------HccCCchH
Confidence 99999999955432222 3456666543 11110 00 0011111 12346677
Q ss_pred HHHHHHHH--HHhCcchH---HHHHHHHHHHHHHHHHHHhcCCCeEEcCCCC-------------------cce--EEEe
Q 001989 428 ANMAAMYA--VYHGPEGL---KTIAQRVHGLAGTFALGLKKLGTVEVQGLPF-------------------FDT--VKVK 481 (985)
Q Consensus 428 a~~aa~~l--~~~g~~Gl---~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~-------------------~~~--~~~~ 481 (985)
.++|++-. .+.+..|- ++..+...+..+++++...++++|.++.+.. +++ +++.
T Consensus 271 ~l~ASlD~Ar~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~ 350 (557)
T COG1982 271 PLMASLDVARMQEGNAGRELWQEVIDEAIDFRKALRRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTIT 350 (557)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccccCCcccccccccccccceeccccEEEEe
Confidence 77777732 23344443 2335666777888888888886587764321 233 5566
Q ss_pred cCC----HHHHHHHHHHcCceeeeecC--CeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 482 CAD----AHAIASAAYKIEMNLRVVDS--NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 482 ~~~----~~~v~~~L~~~GI~~~~~~~--~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+. +..+.+.|+++||....... ..+.+++.+..+..+++.|++.+..
T Consensus 351 tp~~Gipg~~v~~~L~e~gii~e~~~d~~~lll~~~~~gk~~~lv~~L~~f~r~ 404 (557)
T COG1982 351 TPEFGIPGAIVAKYLREHGIIPEETGDYSNLLLFSPGIGKWQTLVDRLLEFKRR 404 (557)
T ss_pred cCCCCCcHHHHHHHHHHcCCeeeecCCceeeEEeeeccchHHHHHHHHHHHHHh
Confidence 543 88999999999998876543 4466666666788899999998874
No 437
>PRK06234 methionine gamma-lyase; Provisional
Probab=99.57 E-value=7.8e-14 Score=161.59 Aligned_cols=212 Identities=21% Similarity=0.206 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+. .+.+++|+.|+.+++.++. .++++||++...|+..... ++..|++++.++.
T Consensus 66 ~~~Le~~iA~~~g~~~-~l~~~sG~~Ai~~al~~ll--------~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~ 136 (400)
T PRK06234 66 STEVENKLALLEGGEA-AVVAASGMGAISSSLWSAL--------KAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDT 136 (400)
T ss_pred HHHHHHHHHHHhCCCc-EEEEcCHHHHHHHHHHHHh--------CCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECC
Confidence 3478899999999865 4667788877655444332 4788999988877754432 4678999999986
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHc--CCEEEEEccccccccCCCCCCccCCcE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDN--GGQVYMDGANMNAQVGLTSPGYIGADV 786 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~--galliVD~a~~~~~~~l~~pg~~g~Di 786 (985)
+ |+++++++++ ++|++|++++| |++|.+. |+++|+++|+++ |+++++|+++..+ .+..|..+++|+
T Consensus 137 ~-----d~e~l~~~i~---~~tklI~iesP~NPtG~v~-dl~~I~~la~~~~~~i~livDea~~~~--~~~~~l~~g~Di 205 (400)
T PRK06234 137 S-----NLEEVRNALK---ANTKVVYLETPANPTLKVT-DIKAISNIAHENNKECLVFVDNTFCTP--YIQRPLQLGADV 205 (400)
T ss_pred C-----CHHHHHHHhc---cCCeEEEEECCCCCCCCcC-CHHHHHHHHHhcCCCCEEEEECCCCch--hcCCchhhCCcE
Confidence 4 8999999997 78999999999 4799998 899999999997 9999999987532 233566678999
Q ss_pred EEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
++.|++|+|+.+ |...+|++++++++.+.+... +. + ..++...+ + ..+|..+. |-+
T Consensus 206 vv~S~sK~l~g~---g~~~gG~v~~~~~~~~~l~~~--~~--------~-~~~g~~l~-----p---~~a~l~~~--~l~ 261 (400)
T PRK06234 206 VVHSATKYLNGH---GDVIAGFVVGKEEFINQVKLF--GI--------K-DMTGSVIG-----P---FEAFLIIR--GMK 261 (400)
T ss_pred EEeeccccccCC---CCceeEEEEecHHHHHHHHHH--HH--------H-HhcCCCCC-----H---HHHHHHHh--ccC
Confidence 999999999522 112369999887765544210 00 0 00111111 1 11233333 334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 001989 867 GLTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~g 889 (985)
.+..+.++..+++.++.+.|++.
T Consensus 262 tl~~r~~~~~~na~~~a~~L~~~ 284 (400)
T PRK06234 262 TLQIRMEKHCKNAMKVAKFLESH 284 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcC
Confidence 45567777889999999999863
No 438
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=99.57 E-value=8.3e-13 Score=151.96 Aligned_cols=212 Identities=18% Similarity=0.178 Sum_probs=150.5
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|++.|.+ ++.+++|+++++.+++.++ . ++||+|+++...|+++...+..++...++++..++. ++
T Consensus 54 ~~le~~lA~l~g~~--~v~~~~gg~~Ai~~~l~al-l--~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~~d~~~ 128 (382)
T TIGR02080 54 DLLQQALAELEGGA--GAVVTNTGMSAIHLVTTAL-L--GPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQGDEQA 128 (382)
T ss_pred HHHHHHHHHHhCCC--cEEEEcCHHHHHHHHHHHH-c--CCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECCCCHHH
Confidence 35778999999954 5889999999888777765 3 389999999999998888877666666788888754 45
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++.+| |++|.+.|+++|+++||++|++++|| +.++.+....|-++|+|++++|. |.++++. +
T Consensus 129 l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD-~a~~~~~~~~pl~~gaDivv~S~sK~l~G~~---~ 204 (382)
T TIGR02080 129 LRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVD-NTFLSPALQNPLALGADLVLHSCTKYLNGHS---D 204 (382)
T ss_pred HHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEE-CCCcccccCCchhhCCCEEEeecceeccCCC---C
Confidence 666 7888999999998 78999999999999999999999994 44555555556678999999998 7665321 1
Q ss_pred CcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 368 PHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 368 P~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
--.|++.++ +++.+++- ..+...| +|. +++ .+ |+..-|.+-+..+
T Consensus 205 ~~~G~i~~~~~~~~~~l~-------------------------~~~~~~g---~~~-sp~---~a--~l~lr~l~tl~~R 250 (382)
T TIGR02080 205 VIAGAVIAKDPQVAEELA-------------------------WWANNLG---VTG-GAF---DS--YLTLRGLRTLVAR 250 (382)
T ss_pred ceeEEEEeCCHHHHHHHH-------------------------HHHHccC---CCC-CHH---HH--HHHHcccchHHHH
Confidence 125776664 34433330 0000101 111 122 11 2344455566666
Q ss_pred HHHHHHHHHHHHHHHhcCCCeE
Q 001989 447 AQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
.++..+++..+.+.|++.+.++
T Consensus 251 ~~~~~~na~~~a~~L~~~p~v~ 272 (382)
T TIGR02080 251 MRLQQRNAQAIVEYLQTQPLVK 272 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCee
Confidence 7788899999999999875455
No 439
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=99.57 E-value=4.4e-13 Score=160.88 Aligned_cols=297 Identities=13% Similarity=0.078 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
+.+.|+.+|++||.+...|..|++|+++.++++++. .+||+||++++.|-+....+.+.|+.++++++..+
T Consensus 197 i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~--------~~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~n~ 268 (713)
T PRK15399 197 HLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAA--------PAGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTRNA 268 (713)
T ss_pred HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhc--------CCCCEEEeecccHHHHHHHHHHcCCeeEEecccccc
Confidence 678999999999999988888888888877777653 47899999999999888888999999999976432
Q ss_pred ----CCCCH-----HHHHHHHHhcCC--CEEEEEEEcCCCccccccCHHHHHHHHHHcCCEE-EEEccccccccCCCC--
Q 001989 713 ----GNINI-----EELRKAAEANRD--NLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQV-YMDGANMNAQVGLTS-- 778 (985)
Q Consensus 713 ----g~iD~-----e~L~~~i~~~~~--~t~~Vvv~~pn~~G~i~~di~eI~~la~~~gall-iVD~a~~~~~~~l~~-- 778 (985)
|.++. +.++++|+++++ +.+++++++|++.|++. |+++|.++| |+.+ +||+||. +...|..
T Consensus 269 ~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTYdGi~y-d~~~I~~~~---g~~~ilvDEAhg-ah~~F~p~~ 343 (713)
T PRK15399 269 LGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTYDGLLY-NTDWIKQTL---DVPSIHFDSAWV-PYTHFHPIY 343 (713)
T ss_pred cCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCCCceee-CHHHHHHHh---CCCEEEEeccch-hhhhcCccc
Confidence 45666 999999986532 22689999999999998 999999998 6666 7999983 2222211
Q ss_pred C--C--cc--CCcEE---EeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 779 P--G--YI--GADVC---HLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 779 p--g--~~--g~Di~---~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
+ . .. ++|.+ +.|.||+++. --...+|-++.. +....+- . ........|..|..
T Consensus 344 ~~~sam~~~~~aD~~i~~tQStHKtL~a-----lTQaS~iHvk~~----vd~~~~n-------~--a~~m~~STSPsY~L 405 (713)
T PRK15399 344 QGKSGMSGERVPGKVIFETQSTHKMLAA-----FSQASLIHIKGE----YDEETFN-------E--AFMMHTSTSPSYPI 405 (713)
T ss_pred CCcChhhCCCCCCeeeeeeeehhccccc-----cchheeeeecCC----CCHHHHH-------H--HHHHHcCCCcHHHH
Confidence 1 1 11 57887 9999999852 124455544332 1100000 0 00000111222333
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--c------CCeeec-------------CCC----------
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--H------YPILFR-------------GVN---------- 898 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g------~~l~~~-------------~~~---------- 898 (985)
.+.+-.|.+.|+. ..| ++..++..+.+..++++|.+ + +++..+ +..
T Consensus 406 mASLD~a~~~m~~--~~G-~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~ 482 (713)
T PRK15399 406 VASVETAAAMLRG--NPG-KRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADAD 482 (713)
T ss_pred HHHHHHHHHHHHh--hhh-HHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCCcccccccccccc
Confidence 3333333334432 233 23455667777777877754 2 222110 000
Q ss_pred ----CceeeEEEEEecCcc-----ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 899 ----GTVAHEFIVDLRGLK-----NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 899 ----~~~~~~~iv~~~~~~-----~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
++. -+.+..+++. ...|+++..+.+.|.++||.+-... ...+.+.++...|++++++ +++.|.+
T Consensus 483 ~~~lDP~--KltI~t~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~~d---~~~vL~l~s~g~t~~~~~~--L~~aL~~ 555 (713)
T PRK15399 483 HMFLDPV--KVTILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTG---PYNLLFLFSIGIDKTKAMG--LLRGLTE 555 (713)
T ss_pred cccCCCc--eEEEEecCcccccccccCCCCHHHHHHHHHHcCCEEEecC---CCeEEEEeCCCCCHHHHHH--HHHHHHH
Confidence 111 1233333220 1247889999999999999875433 3688888999999999999 6666666
Q ss_pred HH
Q 001989 970 KL 971 (985)
Q Consensus 970 ~~ 971 (985)
+-
T Consensus 556 f~ 557 (713)
T PRK15399 556 FK 557 (713)
T ss_pred HH
Confidence 53
No 440
>PLN02271 serine hydroxymethyltransferase
Probab=99.57 E-value=1.8e-13 Score=158.25 Aligned_cols=292 Identities=12% Similarity=0.028 Sum_probs=188.2
Q ss_pred HHHHHHHHhcCCCC----cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHH-----HhhcCCCeEEEE
Q 001989 215 NFQTMIADLTGLPM----SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICI-----TRADGFDIKVVV 285 (985)
Q Consensus 215 e~q~~ia~L~g~~~----~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~-----~~a~~~gi~v~~ 285 (985)
-+++...+|+|++. +|+-.+ +|+.+..++.+|+ +. +||+|+..+..|........ ..+...|+.+..
T Consensus 198 la~era~~lF~~~~~~~gaNVQp~-SGs~AN~aV~~AL-l~--PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~ 273 (586)
T PLN02271 198 LCCERALAAFGLDSEKWGVNVQPY-SCTSANFAVYTGL-LL--PGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFES 273 (586)
T ss_pred HHHHHHHHHhCCcccccccceeec-cHHHHHHHHHHHh-cC--CCCEEEEecCCCCCchhcccccccccccccccceEEE
Confidence 34577889999887 677777 5666677777776 33 99999999988876554321 112234544443
Q ss_pred e-----------Cchhhhc--cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-----CCCCcc
Q 001989 286 S-----------DLKDIDY--KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-----KPPGEL 347 (985)
Q Consensus 286 v-----------~~~~l~~--l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-----~~~~~~ 347 (985)
+ |++++++ ...++++|++....+. ...|+++|.++|+++|++++||+ .+..|++ ..|..
T Consensus 274 vpY~~d~~~g~IDyd~lek~a~~~rPKLII~g~Sayp-r~~D~~~i~eIAdevGA~LmvD~-AH~aGLIa~g~~~sP~~- 350 (586)
T PLN02271 274 LPYKVNPQTGYIDYDKLEEKALDFRPKILICGGSSYP-REWDYARFRQIADKCGAVLMCDM-AHISGLVAAKECVNPFD- 350 (586)
T ss_pred EEcccccccCccCHHHHHHHhhhcCCeEEEECchhcc-CcCCHHHHHHHHHHcCCEEEEEC-cccccccccCcCCCCCc-
Confidence 3 3355665 4678999988765444 66799999999999999999943 3344544 23333
Q ss_pred cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHH
Q 001989 348 GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQAL 426 (985)
Q Consensus 348 GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l 426 (985)
+|||+++++ |+|.+|. .|+++++++....+.|...+|+.+.. .+.+.-.+. +.-.-..+.|+.| ..+
T Consensus 351 ~aDvvt~TTHKtLrGPr------GG~I~~r~~~~~~~~g~~gs~s~~~~-~~d~~~kI~-~aVfPglqgGphn----~~I 418 (586)
T PLN02271 351 YCDIVTSTTHKSLRGPR------GGIIFYRKGPKLRKQGMLLSHGDDNS-HYDFEEKIN-FAVFPSLQGGPHN----NHI 418 (586)
T ss_pred CCcEEEeCCcccCCCCC------ceEEEecccccccccCCccccccccc-cHHHHHHhh-cccCCccccChhH----HHH
Confidence 699999999 8886654 36788887766656666656542210 000000000 0000012233333 345
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-CCcceEEEecCC----HHHHHHHHHHcCceeee
Q 001989 427 LANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCAD----AHAIASAAYKIEMNLRV 501 (985)
Q Consensus 427 ~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~~----~~~v~~~L~~~GI~~~~ 501 (985)
.|++.++ .......+++-+++..+||+.|++.|.+.| ++++.. ..-+.+.++... +..+.+.|.+.||.+..
T Consensus 419 AalAval--kea~~~efk~Ya~QVv~NAkaLA~~L~~~G-~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nk 495 (586)
T PLN02271 419 AALAIAL--KQVATPEYKAYMQQVKKNAQALASALLRRK-CRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNK 495 (586)
T ss_pred HHHHHHH--HHHhChHHHHHHHHHHHHHHHHHHHHHHCC-CeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeEecc
Confidence 5665555 333344568899999999999999999998 999843 333456666542 67777888888997632
Q ss_pred ---------ecCCeEEEEeccCCCH----HHHHHHHHHHh
Q 001989 502 ---------VDSNTVTASFDETTTL----EDVDKLFIVFA 528 (985)
Q Consensus 502 ---------~~~~~lris~t~~~t~----edId~li~aL~ 528 (985)
..++.+|+...+.+++ +|++.+.+.+.
T Consensus 496 n~iP~d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~ 535 (586)
T PLN02271 496 TAIFGDNGTISPGGVRIGTPAMTSRGCLESDFETIADFLL 535 (586)
T ss_pred ccCCCCCCCCCCCcccccCHHHHhcCCCcHHHHHHHHHHH
Confidence 2357799998887664 77777666655
No 441
>PRK05939 hypothetical protein; Provisional
Probab=99.57 E-value=7.5e-13 Score=152.90 Aligned_cols=227 Identities=19% Similarity=0.146 Sum_probs=150.2
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---h
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---K 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~ 289 (985)
..++++.+|+|.|.+. +.++.+|++++.++++++ + ++||+||+++..|+++...+.. ++..|++++++|. +
T Consensus 49 ~~~lE~~la~leg~~~--~v~~ssG~~Ai~~~l~al-l--~~Gd~Vv~~~~~y~~t~~~~~~-l~~~G~~v~~v~~~d~e 122 (397)
T PRK05939 49 TAALEAKITKMEGGVG--TVCFATGMAAIAAVFLTL-L--RAGDHLVSSQFLFGNTNSLFGT-LRGLGVEVTMVDATDVQ 122 (397)
T ss_pred HHHHHHHHHHHhCCCe--EEEeCCHHHHHHHHHHHH-c--CCCCEEEECCCccccHHHHHHH-HHhcCCEEEEECCCCHH
Confidence 4557789999999876 567778888888777665 3 3899999999999888776655 3468999999875 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++.+| |.+|.+.|+++|+++||++|++++||. .++.+....|.++|+|+++.|. |.|+++ |
T Consensus 123 ~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~-t~a~~~~~~~~~~gaDivv~S~sK~~~g~---g 198 (397)
T PRK05939 123 NVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDN-TMTSPWLFRPKDVGASLVINSLSKYIAGH---G 198 (397)
T ss_pred HHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEEC-CcccccccCccccCCEEEEecCeecccCC---C
Confidence 5666 8889999999987 889999999999999999999999953 4444555567889999999998 777642 2
Q ss_pred CCcEEEEEEchhhHhcCCCceeeeeecCCCCcceee--eccccccccc----ccccCCCccchhHHHHHHHHHHHHHhCc
Q 001989 367 GPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRV--AMQTREQHIR----RDKATSNICTAQALLANMAAMYAVYHGP 440 (985)
Q Consensus 367 GP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l--~l~tre~~ir----re~atsni~t~~~l~a~~aa~~l~~~g~ 440 (985)
. .+|.+.+.....+ ..||... ...|.. ..+.--..+| +..|.. .++ -..|+...|.
T Consensus 199 ~-~igg~v~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~G~~----~~p-----~~a~l~~rgl 260 (397)
T PRK05939 199 N-ALGGAVTDTGLFD-----WSAYPNI---FPAYRKGDPQQWGLTQIRKKGLRDMGAT----LSS-----EAAHRIAIGA 260 (397)
T ss_pred C-eEEEEEecCcccc-----cccccch---hhhhhccchhhHHHHHHHHHHHHhcCCC----CCH-----HHHHHHHcCc
Confidence 2 2233333211110 0111000 000000 0000000111 111110 011 1124566777
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCe
Q 001989 441 EGLKTIAQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 441 ~Gl~~i~~~~~~~a~~l~~~L~~~g~~ 467 (985)
+-+..+.+++.+++..+++.|++.+.+
T Consensus 261 ~tl~~R~~~~~~na~~la~~L~~~p~V 287 (397)
T PRK05939 261 ETLALRVDRSCSNALALAQFLEAHPKV 287 (397)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 778888888899999999999987534
No 442
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=99.57 E-value=2.7e-13 Score=157.90 Aligned_cols=165 Identities=23% Similarity=0.275 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCc----c--cHHHHHHCCcEEEEE
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHG----T--NPATAAMCGMKIVSV 707 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg----~--~~~~a~~~G~~vv~v 707 (985)
+.++++.+++++|.+.+. .+++|+.|+..++.+ + .++++||+++..|. + .+..++..|++++++
T Consensus 124 ~~~le~~lA~l~gae~al-vv~sg~aAi~l~l~~---l------~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v 193 (454)
T TIGR00474 124 YSHVEGLLCELTGAEDAL-VVNNNAAAVLLALNT---L------AKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEV 193 (454)
T ss_pred HHHHHHHHHHHhCCCcEE-EECCHHHHHHHHHHH---h------CCcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEe
Confidence 568899999999998754 466787766433322 1 36789999886542 1 234456789999999
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-C--ccc--cccCHHHHHHHHHHcCCEEEEEccccc----c-cc--C
Q 001989 708 GTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-T--HGV--YEEGIDEICKIIHDNGGQVYMDGANMN----A-QV--G 775 (985)
Q Consensus 708 ~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~--~G~--i~~di~eI~~la~~~galliVD~a~~~----~-~~--~ 775 (985)
+.+ +..|+++++++|+ ++|++|++++++ + .|. +. |+++|+++||++|++++||.+... + ++ .
T Consensus 194 ~~~--~~~~l~dle~aI~---~~T~lv~~~h~sN~~~~G~~~~~-dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~ 267 (454)
T TIGR00474 194 GTT--NRTHLKDYEDAIT---ENTALLLKVHTSNYRIVGFTEEV-SIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPD 267 (454)
T ss_pred CCC--CCCCHHHHHHhcC---cCCEEEEEEccCcccccCCCCCC-CHHHHHHHHHHcCCeEEEECCCcccccchhccCCC
Confidence 864 3468999999998 899999998874 3 463 44 899999999999999999965210 0 00 0
Q ss_pred ---CCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCC
Q 001989 776 ---LTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP 820 (985)
Q Consensus 776 ---l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp 820 (985)
+..+.++|+|++++|+||+| |||.+|++++++++.+.+.
T Consensus 268 ~p~~~~~~~~GaDiv~fSg~K~L------gGp~~G~i~g~~~~i~~l~ 309 (454)
T TIGR00474 268 EPTVQEVIAAGVDLVTFSGDKLL------GGPQAGIIVGKKELIERLK 309 (454)
T ss_pred CcccccHhHcCCCEEEecCcccc------CCCeEEEEEECHHHHHhhh
Confidence 12345689999999999998 5788899999987766554
No 443
>PRK08175 aminotransferase; Validated
Probab=99.56 E-value=8e-13 Score=153.46 Aligned_cols=303 Identities=13% Similarity=0.112 Sum_probs=182.6
Q ss_pred hhhHHHHHHHHHHHHHHHhCCC--cc-ceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCc
Q 001989 627 AQGYQEMFNNLGEWLCTITGFD--SF-SLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGM 702 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~--~~-~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~ 702 (985)
.+|..++.+.+.+++.+.+|.. .. ++..++|++ +.. ++++.+ ..++++|+++++.|+.+...++..|+
T Consensus 66 ~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~---~~~~~~-----~~~gd~Vlv~~P~y~~~~~~~~~~g~ 137 (395)
T PRK08175 66 SRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLA---HLMLAT-----LDHGDTVLVPNPSYPIHIYGAVIAGA 137 (395)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHH---HHHHHh-----CCCCCEEEEcCCCCcchHHHHHHcCC
Confidence 3676666666666666655653 33 455555654 432 222322 14789999999888877777788999
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCH---HHHHHHHHHcCCEEEEEccccccc-cCCC
Q 001989 703 KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGI---DEICKIIHDNGGQVYMDGANMNAQ-VGLT 777 (985)
Q Consensus 703 ~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di---~eI~~la~~~galliVD~a~~~~~-~~l~ 777 (985)
+++.+|.++++ .++++++++++...+++++|++++| |++|.+. +. ++|.++|+++|+++++|.++..-. .+..
T Consensus 138 ~~~~v~~~~~~-~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~-~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~ 215 (395)
T PRK08175 138 QVRSVPLVEGV-DFFNELERAIRESYPKPKMMILGFPSNPTAQCV-ELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWK 215 (395)
T ss_pred eEEEEecccCC-CcHHHHHHHHhhccCCceEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHcCcEEEEecchHhhccCCCC
Confidence 99999987543 3589999988744457899999988 5799886 44 899999999999999999873211 1100
Q ss_pred --C----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 778 --S----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 778 --~----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
. ++..+..+++.|+.|.|+.| |.++|+++.++++.+.+.... .....+.++ .
T Consensus 216 ~~~~~~~~~~~~~~i~~~S~SK~~g~p----GlRiG~~~~~~~l~~~~~~~~------------~~~~~~~~~------~ 273 (395)
T PRK08175 216 APSIMQVPGAKDVAVEFFTLSKSYNMA----GWRIGFMVGNPELVSALARIK------------SYHDYGTFT------P 273 (395)
T ss_pred CcchhcCCCcccCEEEEeeccccccCc----chhheeeeCCHHHHHHHHHHH------------hhcccCCCc------H
Confidence 0 11112235678888988543 667999998877665432100 000001111 1
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-H
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-D 929 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~ 929 (985)
...++...+.. ..+-+++..+...++.+++.+.|++ ++.+ ..+.+..+ +.++++.. ....+..+++.+|. +
T Consensus 274 ~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~--~~p~~g~~--i~i~l~~~--~~~~~~~~~~~~l~~~ 346 (395)
T PRK08175 274 LQVAAIAALEG-DQQCVRDIAEQYKRRRDVLVKGLHEAGWMV--EMPKASMY--VWAKIPEP--YAAMGSLEFAKKLLNE 346 (395)
T ss_pred HHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--cCCCEEEE--EEEECCcc--cCCCCHHHHHHHHHHh
Confidence 11111222221 2233455555567778888888876 4332 12222222 34555410 00124678888765 5
Q ss_pred CCCccCCC-CCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 930 YGFHGPTM-SWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 930 ~Gi~~~~~-~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
+||.+... .|+ -++.+||++. .+.+++.. .++.|.+++.
T Consensus 347 ~gv~v~p~~~f~~~~~~~lRis~~--~~~~~~~~--al~~l~~~l~ 388 (395)
T PRK08175 347 AKVCVSPGIGFGDYGDTHVRFALI--ENRDRIRQ--AIRGIKAMFR 388 (395)
T ss_pred CCEEEeCchhhCcCCCCeEEEEeC--CCHHHHHH--HHHHHHHHHH
Confidence 79986542 232 2468999985 46788877 5566666664
No 444
>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]
Probab=99.56 E-value=1.1e-13 Score=148.97 Aligned_cols=287 Identities=14% Similarity=0.181 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEc
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVG 708 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~ 708 (985)
-..++++.||+|.+-+.+.+ ++|.--|+.+.|..+... -|+- +|.++. .|+++ .+-.++.-..+.
T Consensus 217 ~hv~LE~eLA~LHqK~aALl-FsSCfVANDstLftLak~------lpgc-ei~SD~---gNHASMI~GIrns~v~K~IFr 285 (570)
T KOG1360|consen 217 HHVRLEAELADLHQKEAALL-FSSCFVANDSTLFTLAKK------LPGC-EIFSDE---GNHASMIQGIRNSRVPKHIFR 285 (570)
T ss_pred hhhhHHHHHHHHhcCcceee-eeeeeeccchHHHHHHHH------CCCc-EEeccc---cchHHHHHHhhhcCCcceeec
Confidence 34578999999998776532 223333343444433221 1454 444543 33333 234555544455
Q ss_pred CCCCCCCCHHHHHHHHHhcCCC-EEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC------CCCC
Q 001989 709 TDAKGNINIEELRKAAEANRDN-LSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL------TSPG 780 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~-t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l------~~pg 780 (985)
. .|+++|++++...++. .+.|.++.. +..|.+- ||+||++++|+||++..+|++|++++-|- .++|
T Consensus 286 H-----ND~~hL~~lL~~~~~svPKivAFEtVhSM~Gavc-pleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdG 359 (570)
T KOG1360|consen 286 H-----NDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVC-PLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDG 359 (570)
T ss_pred c-----CCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcC-CHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCC
Confidence 5 4999999999865443 566667665 5689998 89999999999999999999997655331 1122
Q ss_pred cc-CCcEEEeCCcccccccCCCCCCceEEEEEcccccCc----CCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHH
Q 001989 781 YI-GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPF----LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 781 ~~-g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~----lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~ 855 (985)
-+ ..||+++.+.|.|+. -+|+|+....+++. .+|.+|. |+ . .+..++.
T Consensus 360 vm~kvDiIsGTLgKafGc-------VGGYIAat~~LvDmiRSyAaGFIFT-------------TS-L------PP~vl~G 412 (570)
T KOG1360|consen 360 VMHKVDIISGTLGKAFGC-------VGGYIAATRKLVDMIRSYAAGFIFT-------------TS-L------PPMVLAG 412 (570)
T ss_pred cchhhhhcccchhhhccc-------ccceehhhhhHHHHHHHhcCceEEe-------------cC-C------ChHHHHh
Confidence 11 379999988888743 34799888766543 3444431 11 1 1112233
Q ss_pred HHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH-CCC
Q 001989 856 SYTYIAMMG-SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD-YGF 932 (985)
Q Consensus 856 a~a~l~~lg-~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~-~Gi 932 (985)
|....+.+. .||. ...++...+..|+++.|.+ |+.++.. + .|.+.+.+.. ..-..++++.|.. .||
T Consensus 413 AleaVr~lk~~eg~-~lR~~hqrnv~~~kq~l~~~GiPVi~~-p----SHIiPv~vgd-----a~l~~~~sd~Li~~h~i 481 (570)
T KOG1360|consen 413 ALEAVRILKSEEGR-VLRRQHQRNVKYVKQLLMELGIPVIPN-P----SHIIPVRVGD-----AALAKQASDILISKHNI 481 (570)
T ss_pred HHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHcCCcccCC-C----cceeeeeccC-----HHHHHHHHHHHHHhcCe
Confidence 444445443 3453 3445677888999999987 7776532 1 3444444421 1224567777765 599
Q ss_pred ccCCCCCC-C---CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 933 HGPTMSWP-V---PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 933 ~~~~~~~p-~---~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
++-.+.|| + ...|||.||..+|.+-++. +++.+..+++++.-
T Consensus 482 YvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~--lv~~l~~vw~~v~l 527 (570)
T KOG1360|consen 482 YVQAINYPTVARGTERLRIAPTPHHTPQMMNI--LVNALLDVWNEVGL 527 (570)
T ss_pred EEEeccCCcccccceeeecCCCCCCCHHHHHH--HHHHHHHHHHHcCC
Confidence 98777777 2 3679999999999999999 88999999887543
No 445
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=99.56 E-value=1e-13 Score=139.93 Aligned_cols=161 Identities=27% Similarity=0.362 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHh--CCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH-HHHHHCCcEEEEEcCC
Q 001989 634 FNNLGEWLCTIT--GFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP-ATAAMCGMKIVSVGTD 710 (985)
Q Consensus 634 ~~e~~~~la~l~--G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~-~~a~~~G~~vv~v~~d 710 (985)
+.++++++++++ +.+...+. ++|+.|+..++++++ .++++|++++..|+.+. ..+...|++++.++.+
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~-~~~t~a~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 72 (170)
T cd01494 2 LEELEEKLARLLQPGNDKAVFV-PSGTGANEAALLALL--------GPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVD 72 (170)
T ss_pred HHHHHHHHHHHcCCCCCcEEEe-CCcHHHHHHHHHHhC--------CCCCEEEEeecccceehhhHHHhcCCEEEEeccC
Confidence 357889999999 54444344 467777765555442 24678999888887777 6778899999999987
Q ss_pred CCCCCCH--HHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCC--CCCccCCc
Q 001989 711 AKGNINI--EELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT--SPGYIGAD 785 (985)
Q Consensus 711 ~~g~iD~--e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~--~pg~~g~D 785 (985)
+++..+. +.+++... .++++++++++++ ..|... |+++|.++|+++|+++|+|+++........ .+...++|
T Consensus 73 ~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~g~~~-~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d 149 (170)
T cd01494 73 DAGYGGLDVAILEELKA--KPNVALIVITPNTTSGGVLV-PLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGAD 149 (170)
T ss_pred CCCccchhhhhhhhccc--cCceEEEEEecCcCCCCeEc-CHHHHHHHHHHcCCEEEEecccccccccccccccccccCC
Confidence 6544433 25544332 3688999999885 578777 899999999999999999999853322210 24456799
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEc
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVK 812 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~ 812 (985)
+++.|+||+| |+|++|++++|
T Consensus 150 ~~~~s~~K~~------~~~~~G~l~~~ 170 (170)
T cd01494 150 VVTFSLHKNL------GGEGGGVVIVK 170 (170)
T ss_pred EEEEEccccc------CCCceEEEEeC
Confidence 9999999998 45899999875
No 446
>PRK05939 hypothetical protein; Provisional
Probab=99.56 E-value=2.2e-13 Score=157.28 Aligned_cols=222 Identities=15% Similarity=0.106 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH---HHHHCCcEEEEEcCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA---TAAMCGMKIVSVGTD 710 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~---~a~~~G~~vv~v~~d 710 (985)
..++++.++++.|.+.+ +.+++|..|+.+++.++. ++||+||+++..|+.+.. .+...|++++.++.+
T Consensus 49 ~~~lE~~la~leg~~~~-v~~ssG~~Ai~~~l~all--------~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~ 119 (397)
T PRK05939 49 TAALEAKITKMEGGVGT-VCFATGMAAIAAVFLTLL--------RAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDAT 119 (397)
T ss_pred HHHHHHHHHHHhCCCeE-EEeCCHHHHHHHHHHHHc--------CCCCEEEECCCccccHHHHHHHHHhcCCEEEEECCC
Confidence 45788999999998764 556678777755554432 478999999887776544 345689999999873
Q ss_pred CCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEe
Q 001989 711 AKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHL 789 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~ 789 (985)
|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++..+ ...+|..+|+|+++.
T Consensus 120 -----d~e~l~~~l~---~~tklV~vesp~NptG~v~-dl~~I~~la~~~gi~livD~t~a~~--~~~~~~~~gaDivv~ 188 (397)
T PRK05939 120 -----DVQNVAAAIR---PNTRMVFVETIANPGTQVA-DLAGIGALCRERGLLYVVDNTMTSP--WLFRPKDVGASLVIN 188 (397)
T ss_pred -----CHHHHHHhCC---CCCeEEEEECCCCCCCCHH-hHHHHHHHHHHcCCEEEEECCcccc--cccCccccCCEEEEe
Confidence 8999999997 89999999998 5799997 8999999999999999999987432 234677889999999
Q ss_pred CCcccccccCCCCCCceEEEEEcccccCc-----CCCCccccC-CCC----CCCCCCCCCCCCCCcchhhhHHHHHHHHH
Q 001989 790 NLHKTFCIPHGGGGPGMGPIGVKKHLAPF-----LPSHPVVST-GGI----PAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 790 s~hK~l~~p~g~GGPg~G~i~~~~~l~~~-----lp~~~~g~~-~~~----~~~~~~~~~~~i~s~~~g~~~~~~~a~a~ 859 (985)
|+||+|+. .|..+|.+++.....+. +...+.... .+. .+......++... ....+|
T Consensus 189 S~sK~~~g----~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~--------~p~~a~-- 254 (397)
T PRK05939 189 SLSKYIAG----HGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGATL--------SSEAAH-- 254 (397)
T ss_pred cCeecccC----CCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCCCC--------CHHHHH--
Confidence 99999963 24444555443221110 000000000 000 0000000111111 112233
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001989 860 IAMMGSKGLTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 860 l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g 889 (985)
+...|.+.+..+.+++.+++..+++.|++.
T Consensus 255 l~~rgl~tl~~R~~~~~~na~~la~~L~~~ 284 (397)
T PRK05939 255 RIAIGAETLALRVDRSCSNALALAQFLEAH 284 (397)
T ss_pred HHHcCcCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 455566778888899999999999999864
No 447
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=99.55 E-value=2.9e-14 Score=158.61 Aligned_cols=212 Identities=18% Similarity=0.212 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-- 288 (985)
..+.++|+.+|+++|++.+ +.+++|+|.+..++++++ . ++||+|++++.+|+++...+.. .|++++++++
T Consensus 59 g~i~~~~~~~A~~~ga~~~-~~~~~Gst~a~~~~l~al-~--~~gd~Vlv~~~~h~s~~~~~~~----~g~~~~~v~~~~ 130 (294)
T cd00615 59 GPIKEAQELAARAFGAKHT-FFLVNGTSSSNKAVILAV-C--GPGDKILIDRNCHKSVINGLVL----SGAVPVYLKPER 130 (294)
T ss_pred hHHHHHHHHHHHHhCCCCE-EEEcCcHHHHHHHHHHHc-C--CCCCEEEEeCCchHHHHHHHHH----CCCEEEEecCcc
Confidence 4578899999999998753 324688888888877765 2 3899999999999999988763 4667666532
Q ss_pred ------------hhhhc-c--CCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccc-----cCC-CCCCcc
Q 001989 289 ------------KDIDY-K--SGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLAL-----TIL-KPPGEL 347 (985)
Q Consensus 289 ------------~~l~~-l--~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~l-----g~l-~~~~~~ 347 (985)
+++++ + ++++++|++++||++|.+.|+++|+++||++|++++||. .++. +.+ ....++
T Consensus 131 ~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~~~dl~~I~~~~~~~g~~livDe-A~~~~~~~~~~~~~~~~~~ 209 (294)
T cd00615 131 NPYYGIAGGIPPETFKKALIEHPDAKAAVITNPTYYGICYNLRKIVEEAHHRGLPVLVDE-AHGAHFRFHPILPSSAAMA 209 (294)
T ss_pred CcccCcCCCCCHHHHHHHHHhCCCceEEEEECCCCCCEecCHHHHHHHHHhcCCeEEEEC-cchhhhccCcccCcchhhc
Confidence 34555 5 357899999999999999999999999999999999942 2321 111 123457
Q ss_pred cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHH
Q 001989 348 GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQAL 426 (985)
Q Consensus 348 GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l 426 (985)
|+|++++|+ |++++| +++|+++++++.... .+ +. +...+.+.+++++ ..+
T Consensus 210 ~~div~~S~hK~l~g~-----~~~~~l~~~~~~~~~--~~-------------~~------~~~~~~~ttsps~---~~~ 260 (294)
T cd00615 210 GADIVVQSTHKTLPAL-----TQGSMIHVKGDLVNP--DR-------------VN------EALNLHQSTSPSY---LIL 260 (294)
T ss_pred CCcEEEEchhcccchH-----hHHHHHHhCCCcCCH--HH-------------HH------HHHHHHCCCCcHH---HHH
Confidence 999999999 766443 234566665431100 00 00 0000112122222 233
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc
Q 001989 427 LANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK 463 (985)
Q Consensus 427 ~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~ 463 (985)
.++.++. .++..+| ++..++..+++++++++|.+
T Consensus 261 asl~~a~--~~~~~~g-~~~~~~~~~~~~~~r~~l~~ 294 (294)
T cd00615 261 ASLDVAR--AMMALEG-KELVEELIELALYARQEINK 294 (294)
T ss_pred HHHHHHH--HHHHHHh-HHHHHHHHHHHHHHHHHHhC
Confidence 3333333 3333445 44677889999999998863
No 448
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=99.55 E-value=2.6e-13 Score=156.52 Aligned_cols=294 Identities=17% Similarity=0.159 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
+.|+++..|+.+|.+...|..|+++.|+.++.+++. ++||+||++++.|-++.....+.|+..+++....+
T Consensus 72 i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~--------~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~np 143 (557)
T COG1982 72 IKEAQELAARVFGADHTYFVVNGTSTANKAVINAVL--------TPGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNP 143 (557)
T ss_pred HHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhc--------CCCCEEEecCCccHHHHHHHHHcCCceEEecCCCCc
Confidence 779999999999999988888988888877766653 48899999999999888888899999998865332
Q ss_pred -----CCCCHHHHHHHHHhcCCCE-EEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEcccccccc--C-CCCC-Ccc
Q 001989 713 -----GNINIEELRKAAEANRDNL-STLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV--G-LTSP-GYI 782 (985)
Q Consensus 713 -----g~iD~e~L~~~i~~~~~~t-~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~--~-l~~p-g~~ 782 (985)
|.++.+.+++.+.++ ++. +++++++|++.|+.- ++++|.+.+++.++|+.+|.+|..-.+ . +... .+.
T Consensus 144 ~~gi~ggI~~~~~~~~l~~~-~~~~k~~vitnpTYdGv~~-n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~ 221 (557)
T COG1982 144 LYGIIGGIPLETFKEALLAH-PDAEKLAVITNPTYDGVCY-NLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNG 221 (557)
T ss_pred cccccCCCCHHHHHHHHHhC-hhhheeEEEecCccceEee-cHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhc
Confidence 679999999988765 445 899999999999998 999999999999999999999853221 1 1111 236
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
++|+++.|.||.++ +.-...+|-+++. +.+....+.. . .....+| |..|...+.+-.|...+..
T Consensus 222 ~~~~~tqS~HK~l~-----alSQaS~iHv~~~--~~~~~~r~ne---a--~~~h~ST----SPsY~l~ASlD~Ar~~~~~ 285 (557)
T COG1982 222 GADFVTQSTHKLLA-----ALSQASMIHVKDG--RAVNHERFNE---A--LMMHQST----SPSYPLMASLDVARMQEGN 285 (557)
T ss_pred CceEEEechhhhhh-----hhhhhHHHhhCCC--ccCCHHHHHH---H--HHHHccC----CchHHHHHHHHHHHHhhhh
Confidence 79999999999984 2223344444432 1111000000 0 0000111 2223333333333333333
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCC-------------------CceeeEEEEEecCccccCCCCHH
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVN-------------------GTVAHEFIVDLRGLKNTAGIEPE 921 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~-------------------~~~~~~~iv~~~~~~~~~g~~~~ 921 (985)
-|.+-.++..+...+.++++++...+ ++.+..++.. +|. -+.+..+ ..|+++.
T Consensus 286 ~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~--Klti~tp----~~Gipg~ 359 (557)
T COG1982 286 AGRELWQEVIDEAIDFRKALRRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPT--KLTITTP----EFGIPGA 359 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccccCCcccccccccccccceecccc--EEEEecC----CCCCcHH
Confidence 34333333355566777777776654 3444322210 111 1233332 3589999
Q ss_pred HHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHH
Q 001989 922 DVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 922 ~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~ 960 (985)
.+++.|.++||..-.+. .....+.+++.+..+..++++
T Consensus 360 ~v~~~L~e~gii~e~~~-d~~~lll~~~~~gk~~~lv~~ 397 (557)
T COG1982 360 IVAKYLREHGIIPEETG-DYSNLLLFSPGIGKWQTLVDR 397 (557)
T ss_pred HHHHHHHHcCCeeeecC-CceeeEEeeeccchHHHHHHH
Confidence 99999999999864332 112456676665566667777
No 449
>PRK06434 cystathionine gamma-lyase; Validated
Probab=99.55 E-value=8e-13 Score=151.35 Aligned_cols=211 Identities=17% Similarity=0.109 Sum_probs=148.3
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchhhh
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDID 292 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~ 292 (985)
+.++++.+|++.|.+. +..+.+|++++.++++++ + ++||+||++...+......+...+...|++++++|.++.+
T Consensus 66 ~~~lE~~la~leg~~~--av~~sSG~aAi~~al~al-l--~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~~~~ 140 (384)
T PRK06434 66 VQAFEEKYAVLENAEH--ALSFSSGMGAITSAILSL-I--KKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDTDRLN 140 (384)
T ss_pred HHHHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHH-h--CCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECCCChh
Confidence 4557789999999875 678899999888887765 3 3899999998877666665555556789999999986544
Q ss_pred c--cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 293 Y--KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 293 ~--l~~-~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
. +++ ++++|++.+| |.++.+.|+++|+++||++| ++|| +.++.+....|-.+|+|++++|+ |.+++|-..
T Consensus 141 ~~~l~~~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD-~t~~s~~~~~pl~~gaDivv~S~tK~i~G~~d~-- 215 (384)
T PRK06434 141 SLDFDPSNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVD-ATFASPYNQNPLDLGADVVIHSATKYISGHSDV-- 215 (384)
T ss_pred heeecCCCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEE-CCCCCcccCCchhcCCCEEEeecccccCCCCCc--
Confidence 3 555 6999999987 78999999999999999998 4564 34555556667789999999999 777654211
Q ss_pred CcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 368 PHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 368 P~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
-.|.+.+++ ++.+++- ..|+..|.. . ++ ..|+ +...|-+-++.+
T Consensus 216 -~gG~vv~~~~~~~~~~~-------------------------~~~~~~G~~-~---~~---~~A~--l~~~gL~tL~~R 260 (384)
T PRK06434 216 -VMGVAGTNNKSIFNNLV-------------------------ERRKTLGSN-P---DP---IQAY--LALRGLKTLGLR 260 (384)
T ss_pred -eEEEEecCcHHHHHHHH-------------------------HHHHhcCCC-C---CH---HHHH--HHHhCCCcHHHH
Confidence 146666643 3332220 000111100 0 11 2222 345566677888
Q ss_pred HHHHHHHHHHHHHHHhcCCCeE
Q 001989 447 AQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
.++..+++..+.+.|++.+.++
T Consensus 261 ~~r~~~~a~~~a~~L~~~p~v~ 282 (384)
T PRK06434 261 MEKHNKNGMELARFLRDSKKIS 282 (384)
T ss_pred HHHHHHHHHHHHHHHHcCCCcc
Confidence 8899999999999999875343
No 450
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.55 E-value=1.9e-12 Score=150.76 Aligned_cols=142 Identities=17% Similarity=0.158 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCc-ccHHHHH---HCCcEEEEEcCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHG-TNPATAA---MCGMKIVSVGTD 710 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg-~~~~~a~---~~G~~vv~v~~d 710 (985)
.++++.++++.|.+.. +.+++|++|+.+++.++. .++++||++...++ ++..... ..|+++..++.
T Consensus 61 ~~Le~~lA~l~g~~~~-l~~ssG~~Ai~~al~al~--------~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~- 130 (425)
T PRK06084 61 DVLEQRVAALEGGVGA-LAVASGMAAITYAIQTIA--------EAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAH- 130 (425)
T ss_pred HHHHHHHHHHhCCCce-eEehhHHHHHHHHHHHHh--------CCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECC-
Confidence 4788999999997653 556778877755555432 36789998766555 3322222 35778877775
Q ss_pred CCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEe
Q 001989 711 AKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHL 789 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~ 789 (985)
.|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|+++++|+++..+ ....|..+|+|+++.
T Consensus 131 ----~d~e~le~ai~---~~tklV~lesp~NPtG~v~-dl~~I~~la~~~~i~vVvD~a~a~~--~~~~p~~~gaDivv~ 200 (425)
T PRK06084 131 ----DDIAALEALID---ERTKAVFCESIGNPAGNII-DIQALADAAHRHGVPLIVDNTVATP--VLCRPFEHGADIVVH 200 (425)
T ss_pred ----CCHHHHHHHhc---cCCcEEEEeCCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCccc--ccCChhhcCCCEEEE
Confidence 38999999998 78999999998 6799998 8999999999999999999998533 234566789999999
Q ss_pred CCccccc
Q 001989 790 NLHKTFC 796 (985)
Q Consensus 790 s~hK~l~ 796 (985)
|++|+++
T Consensus 201 S~tK~l~ 207 (425)
T PRK06084 201 SLTKYIG 207 (425)
T ss_pred Cchhccc
Confidence 9999995
No 451
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=99.55 E-value=7.9e-13 Score=152.36 Aligned_cols=286 Identities=14% Similarity=0.067 Sum_probs=172.0
Q ss_pred HHHHHHHHHhC--------CCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCC-CEEEEcCCCCcccHHHHHHCCcEEE
Q 001989 636 NLGEWLCTITG--------FDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHR-NVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 636 e~~~~la~l~G--------~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~-~~IIv~~~~Hg~~~~~a~~~G~~vv 705 (985)
++++.+++.++ .+..++..++|++ +...++.++ . .++ ++|+++++.+..+...++..|++++
T Consensus 70 ~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~---~-----~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~ 141 (374)
T PRK02610 70 ALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIAT---C-----LGGEGSILVAEPTFSMYGILAQTLGIPVV 141 (374)
T ss_pred HHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHH---c-----CCCCCeEEEcCCChHHHHHHHHHcCCEEE
Confidence 45566666665 4445566666655 432222221 1 234 3799998877777777889999999
Q ss_pred EEcCCCC-CCCCHHHHHHHHHhc-CCCEEEEEEEcC-CCccccccCHHHHHHHHHH-cCCEEEEEccccccccCCCCCCc
Q 001989 706 SVGTDAK-GNINIEELRKAAEAN-RDNLSTLMVTYP-STHGVYEEGIDEICKIIHD-NGGQVYMDGANMNAQVGLTSPGY 781 (985)
Q Consensus 706 ~v~~d~~-g~iD~e~L~~~i~~~-~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~-~galliVD~a~~~~~~~l~~pg~ 781 (985)
.++.+++ +.+|+++|++++++. .+++++|++++| |++|.+. +.+++.++++- +|+++++|.++.. +.....+..
T Consensus 142 ~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~-s~~~l~~l~~~~~~~~iI~De~Y~~-~~~~~~~~~ 219 (374)
T PRK02610 142 RVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPL-TAAELEWLRSLPEDILVVIDEAYFE-FSQTTLVGE 219 (374)
T ss_pred EecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCC-CHHHHHHHHhccCCcEEEEeccccc-cCccchHHH
Confidence 9998653 689999999998631 137899999999 4799997 55555555431 4899999998732 111101110
Q ss_pred --cCC-cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 001989 782 --IGA-DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 782 --~g~-Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
... -|++.|+.|+|++| |.++|++++++++.+.+.... ...++++ ..+. ++.+
T Consensus 220 ~~~~~~~ivi~SfSK~~g~~----GlRiG~~v~~~~l~~~l~~~~--------------~~~~~~~--~~q~----a~~~ 275 (374)
T PRK02610 220 LAQHPNWVILRTFSKAFRLA----AHRVGYAIGHPELIAVLEKVR--------------LPYNLPS--FSQL----AAQL 275 (374)
T ss_pred HhcCCCEEEEEecchhccCc----ccceeeeecCHHHHHHHHHhc--------------CCCCCCH--HHHH----HHHH
Confidence 111 26677888888654 789999998877655432110 0011111 1121 1122
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC
Q 001989 859 YIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS 938 (985)
Q Consensus 859 ~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~ 938 (985)
++. ..+.+.+..++..+.++.+.+.|++...+...++ +..+ +.++++ .+.+..++.+.|.++|+.+...
T Consensus 276 ~l~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~p~-~g~f--~~~~l~-----~~~~~~~~~~~l~~~gi~v~~~- 344 (374)
T PRK02610 276 ALE--HRQELLAAIPEILQERDRLYQALQELPQLRVWPS-AANF--LYLRLS-----QDAALAALHQALKAQGTLVRHT- 344 (374)
T ss_pred Hhc--CHHHHHHHHHHHHHHHHHHHHHHHhCCCcEeCCC-cceE--EEEeCC-----CCCCHHHHHHHHHHCCEEEEeC-
Confidence 222 1133333334445556667777765212222222 2222 345554 2356789999999999988532
Q ss_pred CCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 939 WPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 939 ~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.+++||++. +.+++++ +++.|++++..+
T Consensus 345 ---~~~lRls~~---~~~~~~~--~l~~l~~~l~~~ 372 (374)
T PRK02610 345 ---GGGLRITIG---TPEENQR--TLERLQAALTQL 372 (374)
T ss_pred ---CCeEEEeCC---CHHHHHH--HHHHHHHHHhhc
Confidence 478999985 4678888 677788777654
No 452
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=99.55 E-value=1.5e-12 Score=153.36 Aligned_cols=334 Identities=15% Similarity=0.127 Sum_probs=191.5
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~air 669 (985)
..||++++.+..+...+......... ..+. .+...++.+.|+++++.. ...++.+||++|++++++.+|
T Consensus 66 ~~lGh~~p~v~~ai~~q~~~~~~~~~-~~~~--------~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr 136 (451)
T PRK06918 66 INVGHSHPKVKEALHKQVDQYIHTGF-NVMM--------YEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIAR 136 (451)
T ss_pred cCCCCCCHHHHHHHHHHHHhccCccc-cccc--------cHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHH
Confidence 45888877777665544322111111 0000 123457788888888532 245788999999999999998
Q ss_pred HHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc-------------EEEEEcCCC-----CCCCC-------HHHHHHH
Q 001989 670 AYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM-------------KIVSVGTDA-----KGNIN-------IEELRKA 723 (985)
Q Consensus 670 ~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~-------------~vv~v~~d~-----~g~iD-------~e~L~~~ 723 (985)
.|. ++.+||. ...+||....+....|- .+..+|... .+..+ ++.+++.
T Consensus 137 ~~t------gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (451)
T PRK06918 137 KYT------KRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNF 210 (451)
T ss_pred HHh------CCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHH
Confidence 862 3455665 66899988665433221 133343311 11111 2234444
Q ss_pred HHh--cCCCEEEEEEEcCC-Ccccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCC---CccC--CcEEEeCCc
Q 001989 724 AEA--NRDNLSTLMVTYPS-THGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSP---GYIG--ADVCHLNLH 792 (985)
Q Consensus 724 i~~--~~~~t~~Vvv~~pn-~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~p---g~~g--~Di~~~s~h 792 (985)
+.. +.+++++|+++-.. ..|++.+ .+++|.++|+++|+++|.|+++. +++-...+ ..++ +|++++ .
T Consensus 211 ~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~t-g~gr~g~~~a~~~~~v~pDi~t~--s 287 (451)
T PRK06918 211 FISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQT-GFARTGKYFAIEHFDVVPDLITV--S 287 (451)
T ss_pred HHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CcCccCceehhHhcCCCCCEEee--e
Confidence 421 23568888876433 3465432 38999999999999999999873 22111111 1233 787754 4
Q ss_pred ccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHH
Q 001989 793 KTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEAS 872 (985)
Q Consensus 793 K~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~ 872 (985)
|.++ +|..+|++++++++.+.+.... . .+++.|+++.++++.+.+..+..+.+.+
T Consensus 288 K~l~-----~G~pig~v~~~~~i~~~~~~~~--------------~----~~T~~g~~l~~aaa~a~l~~i~~~~~~~-- 342 (451)
T PRK06918 288 KSLG-----AGVPISGVIGRKEIMDESAPGE--------------L----GGTYAGSPLGCAAALAVLDIIEKENLND-- 342 (451)
T ss_pred hhhc-----CCCccEEEEEcHHHHhccCCCC--------------c----CcCCCcCHHHHHHHHHHHHHHHHCCHHH--
Confidence 8774 4567889998877765442110 0 1123345666666677777775555443
Q ss_pred HHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecC-ccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEE
Q 001989 873 KIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRG-LKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLM 946 (985)
Q Consensus 873 ~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~-~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lr 946 (985)
+..+..+++.++|++. +++. ..+. +. +..+.+..+. .+.+.......+.+.|.++|+.+.... ...+.+|
T Consensus 343 -~~~~~g~~l~~~l~~l~~~~~~~~~vrg~-G~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~~~~-~~~~~lr 418 (451)
T PRK06918 343 -RAIELGKVVMNRFEEMKNKYNCIGDVRGL-GA-MCAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSAG-TYGNVIR 418 (451)
T ss_pred -HHHHHHHHHHHHHHHHHhhCCCceeeccc-ee-EEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEEeecC-CCCCEEE
Confidence 4455567777777542 2221 1121 22 2112121000 000001124567777889999874322 1137899
Q ss_pred EeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 947 IEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 947 is~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
++|+...|++|||+ .+++|++.+.++
T Consensus 419 l~p~l~~t~~~id~--~l~~l~~~l~~~ 444 (451)
T PRK06918 419 VLMPLVITDEQLEE--GLTIIEESLQAC 444 (451)
T ss_pred EECCCccCHHHHHH--HHHHHHHHHHHH
Confidence 99999899999999 778888888765
No 453
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=99.55 E-value=8.6e-13 Score=142.29 Aligned_cols=223 Identities=20% Similarity=0.177 Sum_probs=145.7
Q ss_pred HHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCc-cc---HHHHHHCCcEEEEEcCCC
Q 001989 636 NLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHG-TN---PATAAMCGMKIVSVGTDA 711 (985)
Q Consensus 636 e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg-~~---~~~a~~~G~~vv~v~~d~ 711 (985)
.+++.++.+-|.-.. +...||..|. .+++.... ..||+|+.+..-+| ++ ....+..|+++++|+.+
T Consensus 66 vlE~RiAaLEGG~aa-~a~aSG~AA~---~~ai~~la-----~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~- 135 (426)
T COG2873 66 VLEERIAALEGGVAA-LAVASGQAAI---TYAILNLA-----GAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPD- 135 (426)
T ss_pred HHHHHHHHhhcchhh-hhhccchHHH---HHHHHHhc-----cCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCCC-
Confidence 567888888765332 3345565544 33343321 37899998665554 33 23357899999999875
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEEEEc-CCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEEeC
Q 001989 712 KGNINIEELRKAAEANRDNLSTLMVTY-PSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLN 790 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~~~t~~Vvv~~-pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s 790 (985)
|++.++++|+ ++|++|+++. .|+-+.+. |+++|+++||++|++++||-. ++-.-+.+|-+.|+||++.|
T Consensus 136 ----d~~~~~~aI~---~nTkavf~EtigNP~~~v~-Die~ia~iAh~~gvpliVDNT--~atpyl~rP~~hGADIVvHS 205 (426)
T COG2873 136 ----DPENFEAAID---ENTKAVFAETIGNPGLDVL-DIEAIAEIAHRHGVPLIVDNT--FATPYLCRPIEHGADIVVHS 205 (426)
T ss_pred ----CHHHHHHHhC---cccceEEEEeccCCCcccc-CHHHHHHHHHHcCCcEEEecC--CCcceecchhhcCCCEEEEe
Confidence 8999999999 9999999987 47777776 999999999999999999954 34445789999999999999
Q ss_pred CcccccccCCCCCCceEEEEEcccccCcC-CCCccccC-CCC---C-CC------------CC---CCCCCCCCCcchhh
Q 001989 791 LHKTFCIPHGGGGPGMGPIGVKKHLAPFL-PSHPVVST-GGI---P-AP------------EK---SQPLGTIAAAPWGS 849 (985)
Q Consensus 791 ~hK~l~~p~g~GGPg~G~i~~~~~l~~~l-p~~~~g~~-~~~---~-~~------------~~---~~~~~~i~s~~~g~ 849 (985)
..||++ +.|-.+|-++++-...++. ++++-..+ .+. + .+ .| -+.++...+ +
T Consensus 206 ~TK~ig----GhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlGa~ls-P--- 277 (426)
T COG2873 206 ATKYIG----GHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLGATLS-P--- 277 (426)
T ss_pred eccccc----CCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHHHhcccccC-c---
Confidence 999984 3455555555553211111 21110000 000 0 00 00 001111111 1
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCe
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPI 892 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l 892 (985)
- .+++...|-|-+.-+++++++|+..+++.|+++.+|
T Consensus 278 ----f--nAfl~lqGlETL~LRmerH~~NA~~vA~~L~~HpkV 314 (426)
T COG2873 278 ----F--NAFLLLQGLETLSLRMERHCENALKVAEFLENHPKV 314 (426)
T ss_pred ----H--HHHHHHhchhhhHHHHHHHHHhHHHHHHHHhcCCCe
Confidence 1 234556677888888999999999999999875543
No 454
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=99.54 E-value=2.9e-13 Score=153.92 Aligned_cols=305 Identities=11% Similarity=0.017 Sum_probs=190.3
Q ss_pred hhHHHHHHHHHHHHHHHhCCCc---cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCccc-H-HHHHHCCc
Q 001989 628 QGYQEMFNNLGEWLCTITGFDS---FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN-P-ATAAMCGM 702 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~---~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~-~-~~a~~~G~ 702 (985)
+...+++.++++.|.++++.+. +.++.+||+.++++++..+.. .+++++++.. .+|.- . ..++..|+
T Consensus 35 ~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~-------~~g~~vLv~g-~FG~r~~~eia~~~g~ 106 (374)
T TIGR01365 35 KLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLG-------CRGVDVLAWE-SFGKGWVTDVTKQLKL 106 (374)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCC-------CCCCeEEEEC-HHHHHHHHHHHHhcCC
Confidence 4567888899999999999753 246678899888877664321 2567788754 33322 3 44667899
Q ss_pred -EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Q 001989 703 -KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 780 (985)
Q Consensus 703 -~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg 780 (985)
++..+..+++..+|+++++. + .+ |.+++. +.+|+.. |+++|++.+ ++++++||++.+ +++..-.-
T Consensus 107 ~~v~~l~~~~g~~~~~~~ve~--~---~~---v~~vhnETSTGv~n-pv~~i~~~~--~~~lliVDavSs--~g~~~l~~ 173 (374)
T TIGR01365 107 PDVRVLEAEYGKLPDLKKVDF--K---ND---VVFTWNGTTSGVRV-PNGDFIPAD--REGLTICDATSA--AFAQDLDY 173 (374)
T ss_pred CCcEEEcCCCCCCCCHHHcCC--C---CC---EEEecCCCchheec-ccccccccc--CCCcEEEEccch--hcCCCCCh
Confidence 58888887777899999873 2 23 445554 5699999 787766432 489999999875 33331111
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCC--CCccccC--CCC-C--C---CCCCCCCCCCCCcchhhh
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP--SHPVVST--GGI-P--A---PEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp--~~~~g~~--~~~-~--~---~~~~~~~~~i~s~~~g~~ 850 (985)
+ ++|+++.+++|+|+.| ||+++++++++.+.... ...+... .+. . . ......+.+++ ..
T Consensus 174 d-~iDv~~tgsQK~L~~p-----pGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP-----~v 242 (374)
T TIGR01365 174 H-KLDVVTFSWQKVLGGE-----GAHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTP-----SM 242 (374)
T ss_pred h-HCcEEEEechhccCCC-----CceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCCh-----HH
Confidence 2 4999999999999643 79999999987654322 1100000 000 0 0 00001122222 11
Q ss_pred HHHHHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHhhc-c-CCeeecCCCCceeeEEEEEecCccccCCC-----C---
Q 001989 851 LILPISYTYIAMMGSK-GLTEASKIAILNANYMAKRLEK-H-YPILFRGVNGTVAHEFIVDLRGLKNTAGI-----E--- 919 (985)
Q Consensus 851 ~~~~~a~a~l~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~-g-~~l~~~~~~~~~~~~~iv~~~~~~~~~g~-----~--- 919 (985)
..+.++...|..+..+ |+.++.+++.++++++++.+++ + +.+....+........++.++. .++ +
T Consensus 243 ~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~----~~~~~~~~~~~~ 318 (374)
T TIGR01365 243 LCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVD----PAIDALDEDAQA 318 (374)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCC----ccccccccchhh
Confidence 2222233445555565 8999999999999999999997 5 4443211111111113344431 123 2
Q ss_pred --HHHHHHHHHHCCCccCCCCCC-CCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 920 --PEDVAKRLMDYGFHGPTMSWP-VPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 920 --~~~v~~~L~~~Gi~~~~~~~p-~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
..++.+.|.++||.+..-..+ .+..+||.-.-..+.+||+. +++.|.=+
T Consensus 319 ~~~~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~--l~~~l~~~ 370 (374)
T TIGR01365 319 DFAKELISTLEKEGVAYDIGSYRDAPSGLRIWCGATVEKSDLEC--LCPWLDWA 370 (374)
T ss_pred HHHHHHHHHHHHCCEEEeccccccCCCceEEecCCcCCHHHHHH--HHHHHHHH
Confidence 678999999999976432222 23789999999999999999 55555433
No 455
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=99.54 E-value=9e-13 Score=156.46 Aligned_cols=307 Identities=14% Similarity=0.204 Sum_probs=182.6
Q ss_pred hhhHHHHHHHHHHHHHHHhC----CCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHH-HC
Q 001989 627 AQGYQEMFNNLGEWLCTITG----FDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA-MC 700 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G----~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~-~~ 700 (985)
.+|..++.+.+.+++.+.+| +++..+..++|++ |.+..+ +.+. .+||.|+++.+.++.+...+. ..
T Consensus 93 ~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~---~~l~-----~pGD~Vlv~~P~Y~~~~~~~~~~~ 164 (496)
T PLN02376 93 YHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIM---FCLA-----DPGDVFLIPSPYYAAFDRDLRWRT 164 (496)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHH---HHhC-----CCCCEEEECCCCccchHHHHHhhC
Confidence 36776777777777777666 4555565555554 443333 3221 478999999998888776666 58
Q ss_pred CcEEEEEcCCC--CCCCCHHHHHHHHHh---cCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccc
Q 001989 701 GMKIVSVGTDA--KGNINIEELRKAAEA---NRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNA 772 (985)
Q Consensus 701 G~~vv~v~~d~--~g~iD~e~L~~~i~~---~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~ 772 (985)
|++++.||++. ++.+|++++++++.+ ...++++|++++| |++|.+. ..+++|.++|+++|+++++|+++...
T Consensus 165 G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~ 244 (496)
T PLN02376 165 GVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAAT 244 (496)
T ss_pred CCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCcccc
Confidence 99999999853 468999999877532 1247899999999 5799996 24778888999999999999998421
Q ss_pred c-cC--CCC----CCcc-----CCc--EEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCC
Q 001989 773 Q-VG--LTS----PGYI-----GAD--VCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQ 837 (985)
Q Consensus 773 ~-~~--l~~----pg~~-----g~D--i~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~ 837 (985)
. .+ +.. ..+. ..| +++.|++|.|+.| |.++|++++. +.+...+... .
T Consensus 245 ~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glp----GlRvG~li~~~~~l~~~~~~~--------------~ 306 (496)
T PLN02376 245 VFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLP----GFRVGIVYSFNDSVVSCARKM--------------S 306 (496)
T ss_pred ccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCC----cceEEEEEECCHHHHHHHHHH--------------h
Confidence 1 11 110 0010 123 3467889998654 7899999985 3333221100 0
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHHhcHHH-----HHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecC
Q 001989 838 PLGTIAAAPWGSALILPISYTYIAMMGSKG-----LTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRG 911 (985)
Q Consensus 838 ~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG-----l~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~ 911 (985)
....+++ ..+ .+++ ..+.... +.+..++..++.+++.+.|++ ++.+. .+.+..+ +.++++.
T Consensus 307 ~~~~vs~--~~Q-----~a~~--~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~gi~~~--~~~aG~f--lwi~l~~ 373 (496)
T PLN02376 307 SFGLVSS--QTQ-----LMLA--SMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKADIACL--TSNAGLF--AWMDLRH 373 (496)
T ss_pred hcCCCCH--HHH-----HHHH--HHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccc--CCCceEE--EEEEchh
Confidence 0111111 111 1111 1222211 223344456666778888876 44432 2223233 3456542
Q ss_pred cccc-CCC-CHHHHHHHHHHC-CCccCC-CCC--CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 912 LKNT-AGI-EPEDVAKRLMDY-GFHGPT-MSW--PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 912 ~~~~-~g~-~~~~v~~~L~~~-Gi~~~~-~~~--p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.... ... +..++++.|.++ |+.+.+ ..| ..++++||++.. .++++++. .++.|++.+.+.+
T Consensus 374 ~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~-~~~~~l~~--al~rl~~~l~~~~ 440 (496)
T PLN02376 374 LLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFAN-MDDDTLHV--ALGRIQDFVSKNK 440 (496)
T ss_pred hhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeC-CCHHHHHH--HHHHHHHHHHHhh
Confidence 1000 001 235788888764 988653 223 235899999974 34688888 6777777776443
No 456
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.54 E-value=7e-13 Score=153.16 Aligned_cols=290 Identities=14% Similarity=0.119 Sum_probs=181.2
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---- 288 (985)
..++++.+|+++|.+. ...+.+||+++..++.++.+. +||+|+++...|+++...++ ..|++++++|.
T Consensus 31 ~~~le~~la~~~g~~~--~v~~~sgt~al~~~l~al~~~--~Gd~Viv~~~~~~~~~~~~~----~~G~~~~~~~~~~~~ 102 (380)
T TIGR03588 31 VPAFEEALAEYVGAKY--AVAFNSATSALHIACLALGVG--PGDRVWTTPITFVATANCAL----YCGAKVDFVDIDPDT 102 (380)
T ss_pred HHHHHHHHHHHHCCCe--EEEEcCHHHHHHHHHHHcCCC--CCCEEEeCCcchHHHHHHHH----HcCCEEEEEecCCCc
Confidence 3557889999999864 456678888777766665433 89999999999998887764 36888888765
Q ss_pred -----hhhhc-cC----CCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccc----eEEEe
Q 001989 289 -----KDIDY-KS----GDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGA----DIVVG 354 (985)
Q Consensus 289 -----~~l~~-l~----~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~Ga----Di~v~ 354 (985)
+++++ ++ ++|++|++++ ++|...|+++|.++|+++|+++++|+ .+++|.......+|. |++++
T Consensus 103 ~~~d~~~l~~~i~~~~~~~t~~v~~~~--~~G~~~~~~~i~~l~~~~~~~lI~D~-a~a~g~~~~~~~~g~~~~~d~~~~ 179 (380)
T TIGR03588 103 GNIDEDALEKKLAAAKGKLPKAIVPVD--FAGKSVDMQAIAALAKKHGLKIIEDA-SHALGAEYGGKPVGNCRYADATVF 179 (380)
T ss_pred CCcCHHHHHHHhhcccCCCceEEEEeC--CCCccCCHHHHHHHHHHcCCEEEEEC-CCcccCccCCEeCCCccccceEEE
Confidence 34555 66 6899988776 47999999999999999999999953 456654333344555 99999
Q ss_pred cC---ccccccCCCCCCcEEEEEE-chhhHhcCCC-ceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHH
Q 001989 355 SA---QRFGVPMGYGGPHAAFLAT-SQEYKRMMPG-RIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLAN 429 (985)
Q Consensus 355 s~---k~lg~P~~~GGP~~G~l~~-~~~~~~~lp~-~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~ 429 (985)
|. |+++.+ ..|++.+ ++++.+++.. +..|+..+... + .... ....+.+.++ +..+..+..+
T Consensus 180 S~~~~K~~~~~------~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~---~-~~~~--~~~~~~~~~~--~g~n~~m~~l 245 (380)
T TIGR03588 180 SFHPVKIITTA------EGGAVTTNDEELAERMRLLRSHGITKDPLL---F-EKQD--EGPWYYEQQE--LGFNYRMTDI 245 (380)
T ss_pred ecCCCCccccc------CceEEEECCHHHHHHHHHHHHCCCCCCccc---c-cccc--cCcceeeeec--cccccCccHH
Confidence 96 445322 2244444 4555554421 11121111000 0 0000 0000111111 0011112223
Q ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC-------CcceEEEecC---CHHHHHHHHHHcCcee
Q 001989 430 MAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-------FFDTVKVKCA---DAHAIASAAYKIEMNL 499 (985)
Q Consensus 430 ~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-------~~~~~~~~~~---~~~~v~~~L~~~GI~~ 499 (985)
.|++-+..+ +.++++.++-.++++++.+.|.+++++++...+ ....+.+... ...++.+.|.++||.+
T Consensus 246 ~aa~g~~qL--~~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~l~~~L~~~gI~~ 323 (380)
T TIGR03588 246 QAALGLSQL--KKLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQEFGCTRKEVFEALRAAGIGV 323 (380)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCcCCCCHHHHHHHHHHCCCCc
Confidence 333311222 347888888899999999999998646644221 1112333321 2789999999999965
Q ss_pred eeec-------------------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 500 RVVD-------------------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 500 ~~~~-------------------------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+... ...+.+.++...|++|+++++++|+.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~ 378 (380)
T TIGR03588 324 QVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRK 378 (380)
T ss_pred ccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHH
Confidence 3100 15588889999999999999999874
No 457
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=99.54 E-value=2e-12 Score=150.74 Aligned_cols=156 Identities=19% Similarity=0.207 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCccc-H---HHHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN-P---ATAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~-~---~~a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+. .+.+++|+.|+.++++++. .++++||+++..|+.. . ..+...|++++.++.
T Consensus 59 ~~~le~~lA~l~g~~~-~v~~~sG~~Ai~~al~~l~--------~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~ 129 (418)
T TIGR01326 59 TDVLEQRIAALEGGVA-ALAVASGQAAITYAILNLA--------QAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDP 129 (418)
T ss_pred HHHHHHHHHHHhCCCe-EEEEccHHHHHHHHHHHHh--------CCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECC
Confidence 3578999999999765 4666788887765555442 3678999987655432 2 224578999999986
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++++++++ +++++|++++| |++|.+. |+++|+++||++|+++++|+++..+ ....|..+|+|+++
T Consensus 130 ~-----d~~~l~~~l~---~~t~~V~le~p~NPtg~v~-dl~~I~~la~~~~i~livD~t~~~~--~~~~~l~~g~Divv 198 (418)
T TIGR01326 130 D-----DPEEFEKAID---ENTKAVFAETIGNPAINVP-DIEAIAEVAHAHGVPLIVDNTFATP--YLCRPIDHGADIVV 198 (418)
T ss_pred C-----CHHHHHHhcC---cCCeEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCchh--hcCCchhcCCeEEE
Confidence 3 8999999997 78999999998 5789988 8999999999999999999987532 23456677899999
Q ss_pred eCCcccccccCCCCCCceEEEEEcc
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKK 813 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~ 813 (985)
.|++|+|+. .|..+|.+++++
T Consensus 199 ~S~sK~l~g----~G~~lGg~v~~~ 219 (418)
T TIGR01326 199 HSATKYIGG----HGTAIGGVIVDG 219 (418)
T ss_pred ECccccccC----CccceEEEEEec
Confidence 999999953 244567666653
No 458
>PLN02509 cystathionine beta-lyase
Probab=99.54 E-value=1.5e-13 Score=160.48 Aligned_cols=217 Identities=19% Similarity=0.206 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEc
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVG 708 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~ 708 (985)
..++++++++++.|.+.+ +.+++|..+. +++..+ . ++||+||+++..|+.+... ....|++++.++
T Consensus 134 t~~aLE~~lA~leg~e~a-i~~~SG~aAi-~~il~l---l-----~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd 203 (464)
T PLN02509 134 TRDALESLLAKLDKADRA-FCFTSGMAAL-SAVTHL---I-----KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVN 203 (464)
T ss_pred HHHHHHHHHHHHhCCCEE-EEeCcHHHHH-HHHHHH---h-----CCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeC
Confidence 356788999999987654 5556776654 332222 1 4789999988877765432 346799998887
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEE
Q 001989 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~ 787 (985)
. .|+++++++++ ++|++|++++| |++|.+. |+++|+++||++|++++||+++..+. +..|..+|+|++
T Consensus 204 ~-----~d~e~l~~ai~---~~TklV~lesPsNPtG~i~-Dl~~I~~lAk~~g~~lIVD~A~a~~~--~~~pl~~gaDiv 272 (464)
T PLN02509 204 T-----TNLDEVAAAIG---PQTKLVWLESPTNPRQQIS-DIRKIAEMAHAQGALVLVDNSIMSPV--LSRPLELGADIV 272 (464)
T ss_pred C-----CCHHHHHHhCC---cCCeEEEEECCCCCCCCHH-HHHHHHHHHHHcCCEEEEECCccccc--cCChhhcCCcEE
Confidence 5 37999999997 88999999999 5799997 99999999999999999999975333 345667899999
Q ss_pred EeCCcccccccCCCCCCceEEEEEccc-ccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~~-l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
++|++|+++.+ |+..+|+++++++ +...+.. . + ...+...+ + ..||..+. |-+
T Consensus 273 v~S~tK~l~G~---gdv~gG~v~~~~~~l~~~~~~--~----------~-~~~g~~l~-----p---~~A~l~lr--~L~ 326 (464)
T PLN02509 273 MHSATKFIAGH---SDVMAGVLAVKGEKLAKEVYF--L----------Q-NSEGSGLA-----P---FDCWLCLR--GIK 326 (464)
T ss_pred EecCcccccCC---CccceeEEEeccHHHHHHHHH--H----------H-HhcCCCcC-----H---HHHHHHHh--hhh
Confidence 99999998522 2334788887643 2221110 0 0 00011111 1 11333333 445
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC---CeeecC
Q 001989 867 GLTEASKIAILNANYMAKRLEKHY---PILFRG 896 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~g~---~l~~~~ 896 (985)
-+..+.++..+++.++.+.|++.. +|.|++
T Consensus 327 tL~~R~~r~~~nA~~la~~L~~~p~V~~V~yPg 359 (464)
T PLN02509 327 TMALRIEKQQENARKIAMYLSSHPRVKKVYYAG 359 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCccEEECCC
Confidence 566778889999999999998643 345543
No 459
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=99.54 E-value=2.8e-12 Score=146.56 Aligned_cols=269 Identities=14% Similarity=0.092 Sum_probs=178.9
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch----
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK---- 289 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~---- 289 (985)
.++++.+|++++.++.++.++.|++.++..+..++ . .+||+|++++-.|+.+...++ ..|++++.++.+
T Consensus 63 ~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l-~--~~gd~vlv~~P~y~~~~~~~~----~~g~~~~~v~~~~~~~ 135 (353)
T PRK05387 63 DALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAF-F--NHDRPLLFPDITYSFYPVYAG----LYGIPYEEIPLDDDFS 135 (353)
T ss_pred HHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHh-c--CCCCEEEEeCCCHHHHHHHHH----HcCCEEEEeecCCCCC
Confidence 36788999999999999999999997776665554 2 389999999988877665543 468888887653
Q ss_pred -hhhccCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhC-CcEEEEEecCccccCC---CCCCcccceEEEecC-cccccc
Q 001989 290 -DIDYKSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHAN-GVKVVMATDLLALTIL---KPPGELGADIVVGSA-QRFGVP 362 (985)
Q Consensus 290 -~l~~l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~-galliV~a~~~~lg~l---~~~~~~GaDi~v~s~-k~lg~P 362 (985)
+++++.+.+++|++.+| |.+|.+.+.+++.++++.+ |+++++|.....++.- .......-.|+++|. |.|+.|
T Consensus 136 ~d~~~l~~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 215 (353)
T PRK05387 136 IDVEDYLRPNGGIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKSRSLA 215 (353)
T ss_pred CCHHHHHhcCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEEEEEehhHhhcch
Confidence 12233345678888888 7899999999999999876 8888885311112110 001123346888886 888643
Q ss_pred CCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCC-CccchhHHHHHHHHHHHHHhCcc
Q 001989 363 MGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATS-NICTAQALLANMAAMYAVYHGPE 441 (985)
Q Consensus 363 ~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~ats-ni~t~~~l~a~~aa~~l~~~g~~ 441 (985)
|.-+|++++++++++.+.. .+... ..+. +.+ +..++.. .+...+
T Consensus 216 ----GlR~G~~~~~~~~~~~l~~----------------------------~~~~~~~~~~-~~~-~q~~~~~-~l~~~~ 260 (353)
T PRK05387 216 ----GLRVGFAIGHPELIEALNR----------------------------VKNSFNSYPL-DRL-AQAGAIA-AIEDEA 260 (353)
T ss_pred ----hhhceeeecCHHHHHHHHH----------------------------hhccCCCCCc-CHH-HHHHHHH-HhcCHH
Confidence 3457899888777655410 00000 0111 111 1111111 122234
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC--HHHHHHHHHHcCceeeeec----CCeEEEEeccCC
Q 001989 442 GLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVVD----SNTVTASFDETT 515 (985)
Q Consensus 442 Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~~----~~~lris~t~~~ 515 (985)
.+++..++..++.+++.+.|+++| +++... ...-+.+..++ ..++.+.|.++||.++... .+.+|++++
T Consensus 261 ~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~--- 335 (353)
T PRK05387 261 YFEETRAKVIATRERLVEELEALG-FEVLPS-KANFVFARHPSHDAAELAAKLRERGIIVRHFNKPRIDQFLRITIG--- 335 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC-CeECCC-cCcEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC---
Confidence 467788888889999999999987 876532 11123345543 7889999999999885432 368999987
Q ss_pred CHHHHHHHHHHHhC
Q 001989 516 TLEDVDKLFIVFAG 529 (985)
Q Consensus 516 t~edId~li~aL~~ 529 (985)
+.+++++++++|..
T Consensus 336 ~~~~~~~~~~~L~~ 349 (353)
T PRK05387 336 TDEEMEALVDALKE 349 (353)
T ss_pred CHHHHHHHHHHHHH
Confidence 67999999999873
No 460
>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]
Probab=99.54 E-value=1.8e-13 Score=142.19 Aligned_cols=293 Identities=16% Similarity=0.210 Sum_probs=179.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEE
Q 001989 626 QAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 626 ~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv 705 (985)
...|++..+.++++.++++.+-+...+++ ++-.|+.+++-++. ++.+-|+.....|.+.-. |++.-
T Consensus 106 fIcGtq~iHk~LE~kiAqfh~rED~ilyp-scfdANag~feail--------~pedAvfSDeLNhASIId-----GirLc 171 (417)
T KOG1359|consen 106 FICGTQDIHKLLESKIAQFHGREDTILYP-SCFDANAGAFEAIL--------TPEDAVFSDELNHASIID-----GIRLC 171 (417)
T ss_pred EEecchHHHHHHHHHHHHHhCCCceEEec-cccccchHHHHHhc--------Chhhhhhccccccchhhh-----hhHHH
Confidence 34688889999999999999988765554 45445544444443 356655555544443322 22221
Q ss_pred EEcCCCCCCCCHHHHHHHHHhc-CCCEEEEEEEcC--CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC---CC
Q 001989 706 SVGTDAKGNINIEELRKAAEAN-RDNLSTLMVTYP--STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT---SP 779 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~-~~~t~~Vvv~~p--n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~---~p 779 (985)
...+.+|+-+++..+.+. +-+.+ ++++.. +..|-+- |+++|++++++||+++++|.+|..+..|.. ..
T Consensus 172 ----kry~h~dv~~l~~~l~~a~k~r~k-lv~TDg~FSMDGdia-Pl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~ 245 (417)
T KOG1359|consen 172 ----KRYRHVDVFDLEHCLISACKMRLK-LVVTDGVFSMDGDIA-PLEEISQLAKKYGALLFIDECHATGFFGETGRGTA 245 (417)
T ss_pred ----hhhccchhHHHHHHHHHhhhheEE-EEEecceeccCCCcc-cHHHHHHHHHhcCcEEEEeecccceeecCCCCChH
Confidence 134667888888777532 12344 445443 4578887 899999999999999999999965443321 01
Q ss_pred Ccc----CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHH
Q 001989 780 GYI----GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 780 g~~----g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~ 855 (985)
..+ .+|++..++.|.+ ||-.+|+..+++.+...+..+ .|.+-++|.- +......+++
T Consensus 246 E~~~vm~~vdiinsTLgKAl------Gga~GGyttgp~~li~llrqr-----------~RpylFSnsl--ppavV~~a~k 306 (417)
T KOG1359|consen 246 EEFGVMGDVDIINSTLGKAL------GGASGGYTTGPKPLISLLRQR-----------SRPYLFSNSL--PPAVVGMAAK 306 (417)
T ss_pred HHhCCCCcceehhhhhhhhh------cCCCCCCccCChhHHHHHHhc-----------CCceeecCCC--ChhhhhhhHH
Confidence 112 3789888777877 456678998888777665422 1122223321 1112222233
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCcc
Q 001989 856 SYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHG 934 (985)
Q Consensus 856 a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~ 934 (985)
++.. .+.. .+...+...+.+++++..+. |+.+. +...|.. .+.+.- -.-+..+++.|.+.||++
T Consensus 307 a~dl--lm~s---~~~i~~~~a~~qrfr~~me~aGftIs--g~~hPI~-pv~lGd-------a~lA~~~ad~lLk~Gi~V 371 (417)
T KOG1359|consen 307 AYDL--LMVS---SKEIQSRQANTQRFREFMEAAGFTIS--GASHPIC-PVMLGD-------ARLASKMADELLKRGIYV 371 (417)
T ss_pred HHHH--HHhh---HHHHHHHHHHHHHHHHHHHhcCceec--CCCCCcc-ceeccc-------HHHHHHHHHHHHhcCceE
Confidence 3322 2222 22334556677888888775 78764 2111221 122211 123567888999999998
Q ss_pred CCCCCCC----CCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 935 PTMSWPV----PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 935 ~~~~~p~----~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
-..++|+ .-.||+.++.-+|+||||+ +++++.++...+
T Consensus 372 igfs~PvVP~gkariRVqiSAaHt~edid~--~i~Af~~vgr~~ 413 (417)
T KOG1359|consen 372 IGFSYPVVPKGKARIRVQISAAHTEEDIDR--LIEAFSEVGRFL 413 (417)
T ss_pred EeecCCcCCCCceEEEEEEehhcCHHHHHH--HHHHHHHHHHhh
Confidence 7777773 3568999999999999999 777777766544
No 461
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=99.54 E-value=7.9e-13 Score=151.16 Aligned_cols=280 Identities=15% Similarity=0.117 Sum_probs=173.8
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
.++++.++++++.+..++..++|++ +. ..+++.+ .+ +.|+++++.++.+...++..|++++.++.+.+
T Consensus 57 ~~lr~~ia~~~~~~~~~i~it~Ga~~~l---~~~~~~~------~~-~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~ 126 (354)
T PRK06358 57 LELRKRIASFEQLDLENVILGNGATELI---FNIVKVT------KP-KKVLILAPTFAEYERALKAFDAEIEYAELTEET 126 (354)
T ss_pred HHHHHHHHHHhCCChhhEEECCCHHHHH---HHHHHHh------CC-CcEEEecCChHHHHHHHHHcCCeeEEEeCcccc
Confidence 4788889999998887766666665 33 2333322 13 46888888776676677889999999998643
Q ss_pred -CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cCCC-C----CCcc
Q 001989 713 -GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VGLT-S----PGYI 782 (985)
Q Consensus 713 -g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~l~-~----pg~~ 782 (985)
+.+| +++.+.+. +++++|++++| |++|.+.+ .+++|.++|+++|+++++|+++..-. .+.. . ....
T Consensus 127 ~~~~d-~~~~~~~~---~~~~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~ 202 (354)
T PRK06358 127 NFAAN-EIVLEEIK---EEIDLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENF 202 (354)
T ss_pred CCCcc-HHHHHhhc---cCCCEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCC
Confidence 4688 66666665 56888989999 57998861 48889999999999999999873111 1100 0 0111
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~ 861 (985)
.-=+++.|+.|+|++| |.++|++++. +.+...+... . ...++++ ..+ .++...
T Consensus 203 ~~vi~~~S~SK~~gl~----G~RiG~lv~~~~~~~~~~~~~------------~--~~~~~~~--~~q----~~~~~~-- 256 (354)
T PRK06358 203 KNLIIIRAFTKFFAIP----GLRLGYGLTSNKNLAEKLLQM------------R--EPWSINT--FAD----LAGQTL-- 256 (354)
T ss_pred CCEEEEEechhhccCc----chhheeeecCCHHHHHHHHHh------------C--CCCcchH--HHH----HHHHHH--
Confidence 1125677888888654 7899999875 4444332110 0 0001110 011 111122
Q ss_pred HhcHH-HHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-CC
Q 001989 862 MMGSK-GLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-SW 939 (985)
Q Consensus 862 ~lg~e-Gl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~ 939 (985)
+..+ -+.+..+...++++++.+.|++...+.+..+.+. + +.+.++ +..+++++|.++||.+... .|
T Consensus 257 -l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~-f--~~~~~~--------~~~~~~~~l~~~gI~v~~~~~f 324 (354)
T PRK06358 257 -LDDKEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKPSVN-F--IFFKLE--------KPIDLRKELLKKGILIRSCSNY 324 (354)
T ss_pred -hccHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCcce-E--EEEEcC--------chHHHHHHHHHCCeEEEECCCC
Confidence 2222 2344455567777888888876222322222232 2 345543 2478999999999987543 23
Q ss_pred C--CCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 940 P--VPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 940 p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+ ..+++||++ .++++.++ ++++|++++
T Consensus 325 ~~~~~~~iRls~---~~~~~~~~--l~~~l~~~~ 353 (354)
T PRK06358 325 RGLDENYYRVAV---KSREDNKK--LLKALEVIL 353 (354)
T ss_pred CCCCCCEEEEEe---CCHHHHHH--HHHHHHHHh
Confidence 2 246899998 88999999 667776654
No 462
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=99.54 E-value=2.4e-12 Score=150.07 Aligned_cols=142 Identities=24% Similarity=0.225 Sum_probs=116.9
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|+++|.+. +.++++|++++.++++++ .. +||+||++...|+.....+...++..|++++.+|. ++
T Consensus 60 ~~le~~lA~l~g~~~--~v~~~sG~~Ai~~al~~l-~~--~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~d~~~ 134 (418)
T TIGR01326 60 DVLEQRIAALEGGVA--ALAVASGQAAITYAILNL-AQ--AGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPDDPEE 134 (418)
T ss_pred HHHHHHHHHHhCCCe--EEEEccHHHHHHHHHHHH-hC--CCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECCCCHHH
Confidence 467899999999754 678899998888777654 22 88999999999988887776666778999999876 45
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccc
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGV 361 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~ 361 (985)
+++ +++++++|++.+| |.+|.+.|+++|+++||++|++++|| +.++.+....|.++|+||++.|. |++++
T Consensus 135 l~~~l~~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD-~t~~~~~~~~~l~~g~Divv~S~sK~l~g 207 (418)
T TIGR01326 135 FEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVD-NTFATPYLCRPIDHGADIVVHSATKYIGG 207 (418)
T ss_pred HHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEE-CCCchhhcCCchhcCCeEEEECccccccC
Confidence 556 7888999999987 78999999999999999999999994 45555655566788999999998 77753
No 463
>PRK05839 hypothetical protein; Provisional
Probab=99.53 E-value=7.8e-13 Score=152.38 Aligned_cols=289 Identities=11% Similarity=-0.010 Sum_probs=170.0
Q ss_pred hhHHHHHHHHHHHHHHHhCC--CccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+.+.+++++.+|. +..++..++|++ +.. .+++.+.. ..+++.|+++.+.+..+...+...|+++
T Consensus 60 ~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~---~~~~~~~~---~~~gd~vlv~~P~y~~~~~~~~~~g~~v 133 (374)
T PRK05839 60 AGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLF---NFPQFVLF---DKQNPTIAYPNPFYQIYEGAAIASRAKV 133 (374)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHH---HHHHHHhc---CCCCCEEEECCCCchhhHHHHHhcCCEE
Confidence 57667777788888888774 455666666665 332 22222110 1256889999887777777788999999
Q ss_pred EEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccccc--CCC
Q 001989 705 VSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQV--GLT 777 (985)
Q Consensus 705 v~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~--~l~ 777 (985)
+.++.+++ +.+|+++. .+ +++++|++++| |++|.+- ..+++|.++|+++|+++++|.++..-.. ...
T Consensus 134 ~~v~~~~~~~~~~d~~~~--~~----~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~ 207 (374)
T PRK05839 134 LLMPLTKENDFTPSLNEK--EL----QEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPP 207 (374)
T ss_pred EEeecccccCCcCCcchh--hh----ccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCC
Confidence 99998654 45555433 23 46889999999 5799985 2578888889999999999998742110 010
Q ss_pred CCC---------ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 778 SPG---------YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 778 ~pg---------~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
... ..+-=+++.|+.|.|+.| |.++|++++++++...+.... .....++++ ..
T Consensus 208 s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~----GlRiG~ii~~~~~~~~~~~~~------------~~~~~~~~~--~~ 269 (374)
T PRK05839 208 SLLEASILVGNESFKNVLVINSISKRSSAP----GLRSGFIAGDASILKKYKAYR------------TYLGCASPL--PL 269 (374)
T ss_pred CHhhhhcccCccccCcEEEEeccccccCCc----cceeEEEecCHHHHHHHHHHH------------hhcCCCCCh--HH
Confidence 000 111125677888887554 789999998876654332100 000011111 11
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~ 928 (985)
+. ++.+.+ ...+-+++..++..++.+++.+.|. .. . +.+..+ +.++++ +..+++++|.
T Consensus 270 q~----~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~l~--~~--~--p~gg~f--i~~~~~--------~~~~~~~~l~ 327 (374)
T PRK05839 270 QK----AAAVAW--LDDEHAEFFRNIYAKNLKLAREILG--IT--I--PPATFY--VWLPVD--------NDEEFTKKLY 327 (374)
T ss_pred HH----HHHHHh--ccchHHHHHHHHHHHHHHHHHHhcC--CC--C--CCeeEE--EEEeCC--------ChHHHHHHHH
Confidence 11 111111 1223334444445555555555442 11 1 112222 234443 3578888887
Q ss_pred H-CCCccCCCC-CC----CCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 929 D-YGFHGPTMS-WP----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 929 ~-~Gi~~~~~~-~p----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
+ +||.+.... +. .++++||+++. +.+++.+ .++.|.++++
T Consensus 328 ~~~gi~v~pg~~f~~~~~~~~~iRis~~~--~~~~~~~--~l~~l~~~l~ 373 (374)
T PRK05839 328 QNEGIKVLPGSFLGRNGIGKGYVRIALVY--DTPKLEK--ALEIIKTYLE 373 (374)
T ss_pred HHCCEEEeCchhhCCCCCCCCeEEEEecC--CHHHHHH--HHHHHHHHhh
Confidence 5 899865421 21 24899999963 6888888 6666766553
No 464
>PTZ00377 alanine aminotransferase; Provisional
Probab=99.53 E-value=1.9e-12 Score=153.99 Aligned_cols=311 Identities=14% Similarity=0.085 Sum_probs=178.1
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--ccceecCcHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--SFSLQPNAGA-AGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~~~~~~~sGa-~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+.+.+++.+..|.+ ...+..++|+ ++...++.++. .+++|+|+++.+.+..+...++..|.++
T Consensus 115 ~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~-------~~~gD~Vlv~~P~y~~y~~~~~~~g~~~ 187 (481)
T PTZ00377 115 AGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLI-------GDPSDGVMIPIPQYPLYSAAITLLGGKQ 187 (481)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhc-------cCCCCEEEECCCCchhHHHHHHHcCCEE
Confidence 566566666666666555543 3455555554 44433333221 0368999999998877777788999999
Q ss_pred EEEcCCCC--CCCCHHHHHHHHHhc---CCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccc-c-c
Q 001989 705 VSVGTDAK--GNINIEELRKAAEAN---RDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNA-Q-V 774 (985)
Q Consensus 705 v~v~~d~~--g~iD~e~L~~~i~~~---~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~-~-~ 774 (985)
+.++++++ +.+|+++|+++++.. .+++++|++++| |++|.+. ..+++|+++|+++|+++++|.++..- . .
T Consensus 188 v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~ 267 (481)
T PTZ00377 188 VPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDG 267 (481)
T ss_pred EEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCC
Confidence 99998753 579999999998721 127899999999 5799996 13899999999999999999987421 1 1
Q ss_pred C--CCCC----CccCC------c-EEEeCCcccc-cccCCCCCCceEEEEE---cccccCcCCCCccccCCCCCCCCCCC
Q 001989 775 G--LTSP----GYIGA------D-VCHLNLHKTF-CIPHGGGGPGMGPIGV---KKHLAPFLPSHPVVSTGGIPAPEKSQ 837 (985)
Q Consensus 775 ~--l~~p----g~~g~------D-i~~~s~hK~l-~~p~g~GGPg~G~i~~---~~~l~~~lp~~~~g~~~~~~~~~~~~ 837 (985)
. +... ..+.. . +++.|+.|+| ++| |.++|++++ ++++.+.+....
T Consensus 268 ~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~----GlRiG~~~~~~~p~~li~~l~~~~-------------- 329 (481)
T PTZ00377 268 EKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGEC----GRRGGYFELTNIPPEVREQIYKLA-------------- 329 (481)
T ss_pred CCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCC----cCceEEEEEeCCCHHHHHHHHHHh--------------
Confidence 0 1000 01111 1 4567888974 544 789999987 555554332100
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHH--hcHH-------HHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEE
Q 001989 838 PLGTIAAAPWGSALILPISYTYIAM--MGSK-------GLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVD 908 (985)
Q Consensus 838 ~~~~i~s~~~g~~~~~~~a~a~l~~--lg~e-------Gl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~ 908 (985)
. ...+.+..++. ++.+++.. .+.. .+++..+...++++++.+.|++...+.+..+.+.++ +.++
T Consensus 330 ~-~~~~~~~~~Q~----a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~f--l~~~ 402 (481)
T PTZ00377 330 S-INLCSNVVGQL----MTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMY--AFPR 402 (481)
T ss_pred h-eecCCChHHHH----HHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeEE--EEee
Confidence 0 01111111222 11222211 0111 112222234566778888887632332223333333 2223
Q ss_pred ec--C-cc---ccCCC-CHHHHH-HHHHHCCCccCC-CCCC---CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 909 LR--G-LK---NTAGI-EPEDVA-KRLMDYGFHGPT-MSWP---VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 909 ~~--~-~~---~~~g~-~~~~v~-~~L~~~Gi~~~~-~~~p---~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
++ . .. ...+. +..+++ ..|.++|+.+.. ..|. ..+++|+++. .+.+++++ .++.|.+.+++.
T Consensus 403 ~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~--~~~e~l~~--~l~rl~~~~~~~ 476 (481)
T PTZ00377 403 IELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITIL--PPEEQIEE--MVKKIKEFHESF 476 (481)
T ss_pred ccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEEC--CCHHHHHH--HHHHHHHHHHHH
Confidence 22 0 00 00001 123344 455667988543 2232 2368999997 66888998 778888877654
No 465
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=99.53 E-value=1.7e-12 Score=140.01 Aligned_cols=365 Identities=14% Similarity=0.080 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHhccccCc-ccccccccccccCCCcc------ccccccccccccccCCCCchhhhhhHHHHHHHHHHHHH
Q 001989 570 EHELLRYIHLLQSKELSL-CHSMIPLGSCTMKLNAT------TEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLC 642 (985)
Q Consensus 570 e~e~~~~l~~l~~~~~~~-~~~~~~lG~~t~~~~~~------~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la 642 (985)
-..++.++..+...-..- ..-+++||.|.|-+.+- ++.....--....++.|.| +.|...+ ++.+|
T Consensus 41 ~~tir~i~~~l~~~~~p~~~k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yap---s~G~~~A----R~AVA 113 (447)
T KOG0259|consen 41 SVTIRGILSALFDCCDPEKKKPILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAP---SVGILPA----RRAVA 113 (447)
T ss_pred cccHHHHHHHHhhcCCcccCceeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCcCC---ccccHHH----HHHHH
Confidence 345666666665543221 12468998876544331 1111111111223566766 6786654 45556
Q ss_pred HHhCCC------cc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC--CCC
Q 001989 643 TITGFD------SF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD--AKG 713 (985)
Q Consensus 643 ~l~G~~------~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d--~~g 713 (985)
+.++-+ .. .+...+.+||++-++.++. +++..|++|++.+.-+...+...|++|+.++.- .+.
T Consensus 114 eYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA--------~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~w 185 (447)
T KOG0259|consen 114 EYLNRDLPNKLTADDVVLTSGCSQAIELAISSLA--------NPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDW 185 (447)
T ss_pred HHhhcCCCCccCcCceEEeccchHHHHHHHHHhc--------CCCCceecCCCCCchHHHhhhhcCceeEeecccCcccc
Confidence 554322 12 2444444677765555442 477889999885555555578899999999874 458
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEccccc-ccc--CCCCCCccCC--c
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMN-AQV--GLTSPGYIGA--D 785 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~-~~~--~l~~pg~~g~--D 785 (985)
++|++.++++++ ++|.+++|.+|+ +.|.+- ..+++|+++|+++|++++.|+++-. ..+ .+...+.+.- -
T Consensus 186 eIDL~~veal~D---ENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVP 262 (447)
T KOG0259|consen 186 EIDLDGVEALAD---ENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVP 262 (447)
T ss_pred eechHHHHHhhc---cCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCc
Confidence 999999999999 899999999994 666663 3599999999999999999998621 111 1222344432 2
Q ss_pred E-EEeCCcccccccCCCCCCceEEEEEcccccCcCCCCc-cccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh
Q 001989 786 V-CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHP-VVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM 863 (985)
Q Consensus 786 i-~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~-~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l 863 (985)
+ ..++..|-+-.| ||++|.++..+.--.+-.... .+. +....+.. |.+....+|.--+..-
T Consensus 263 VitlggisKrW~VP----GWRlGWi~~hD~~gvf~~~~~~q~~----------~~~~~~~~---~p~TiiQ~AlP~IL~k 325 (447)
T KOG0259|consen 263 VITLGGISKRWIVP----GWRLGWIALHDPRGVFRDTKVVQGI----------KNFLDIIP---GPATIIQGALPDILEK 325 (447)
T ss_pred eEeecccccccccC----CceeeeEEEecccccccchHHHHHH----------HHHHhccC---CccHhHHHHhHHHHHh
Confidence 3 355668877777 899999998753221110000 000 00001100 0112233333222222
Q ss_pred cH-HHHHHHHHHHHHHHHHHHHHhhccCCee-ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC-CCc-cCCCCC
Q 001989 864 GS-KGLTEASKIAILNANYMAKRLEKHYPIL-FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY-GFH-GPTMSW 939 (985)
Q Consensus 864 g~-eGl~~~~~~~~~~a~~l~~~L~~g~~l~-~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~-Gi~-~~~~~~ 939 (985)
-+ +-+.....-...+++...++|++...+. ...|++..+--+-+++..|.+ -.+..+++.+|.++ .++ .++..+
T Consensus 326 Tp~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPeg~mylmv~l~~s~~~~--~~dD~dFc~kL~~Eesv~~LPG~af 403 (447)
T KOG0259|consen 326 TPEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPEGCMYLMVKLNLSLFPD--IEDDVDFCQKLAREESVICLPGQAF 403 (447)
T ss_pred ChHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCCcceEEEeccchhhhcc--ccccHHHHHHHhhhcceEEeccccc
Confidence 23 3344444446778888899998854443 112333222222222221110 12456888888664 555 344445
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 940 PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 940 p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
..++++||+++- ..+.++. .++.|++...|.-
T Consensus 404 ~~~nw~Ri~i~~--~~~~lee--a~~Rik~Fc~RH~ 435 (447)
T KOG0259|consen 404 GLKNWLRIVITV--EEEMLEE--AFSRIKEFCDRHS 435 (447)
T ss_pred cCCCeEEEEEcc--ChHHHHH--HHHHHHHHHHhhh
Confidence 556999998853 3344555 5566676666544
No 466
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=99.53 E-value=9.1e-13 Score=149.33 Aligned_cols=275 Identities=14% Similarity=0.134 Sum_probs=172.0
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++.+++.+|.+...+..+.|++ +. .++++ +. .++ +|+++++.++.+...++..|++++.+|++. .
T Consensus 43 ~~lr~~ia~~~~~~~~~I~it~Gs~~~l---~~~~~-~~-----~~~-~vv~~~P~y~~y~~~~~~~G~~v~~vp~~~-~ 111 (332)
T PRK06425 43 TDIEDQIKIYTQGLKIKVLIGPGLTHFI---YRLLS-YI-----NVG-NIIIVEPNFNEYKGYAFTHGIRISALPFNL-I 111 (332)
T ss_pred HHHHHHHHHHhCCCcceEEECCCHHHHH---HHHHH-Hh-----CCC-cEEEeCCChHHHHHHHHHcCCeEEEEeCCc-c
Confidence 4788999999999887766666655 33 22222 21 244 477767766667777889999999999864 3
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccccc-CCCCC----CccCCc
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQV-GLTSP----GYIGAD 785 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~-~l~~p----g~~g~D 785 (985)
..|.+.+++ .++++|++++| |++|.+. ..+++|.++|+++|+++++|+++..-.. +.... ....--
T Consensus 112 ~~~~~~l~~------~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~v 185 (332)
T PRK06425 112 NNNPEILNN------YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNV 185 (332)
T ss_pred cCcHHHHhh------cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCE
Confidence 346554432 46788999999 4799986 2477788888999999999998732111 10000 111223
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
+++.|+.|+|++| |.++|++++++++.+.+.... ...+++ .. + ..++.....
T Consensus 186 i~~~SfSK~~~l~----GlRiGy~v~~~~li~~l~~~~--------------~~~~~~-----~~--~---~~~l~~~~~ 237 (332)
T PRK06425 186 IIGRSLTKILGIP----SLRIGYIATDDYNMKISRKIT--------------EPWSVC-----DP--A---IDFIRSIDL 237 (332)
T ss_pred EEEeecHHhcCCc----hhhheeeecCHHHHHHHHHcC--------------CCCccC-----HH--H---HHHHHHhhh
Confidence 5667888888654 788999999887665442110 001111 11 1 112222222
Q ss_pred HHH-HHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-CCC--
Q 001989 866 KGL-TEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-SWP-- 940 (985)
Q Consensus 866 eGl-~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~p-- 940 (985)
+.+ ++..+...++++++.+.|++ ++.+. ..+.+. + +.+.++ +..++.+.|.++||.+... .|+
T Consensus 238 ~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~-~~~~g~-f--~~~~~~--------~~~~~~~~l~~~gi~v~~~~~f~~~ 305 (332)
T PRK06425 238 DYVAKHSLDIMENERSYLINNLEAMGFRAA-GDPSAN-F--ITFMIP--------DAHDFYSYLLKNGILVRLLDDYECL 305 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEC-CCCCce-E--EEEEcC--------CHHHHHHHHHHCCeEEEECCCCCCC
Confidence 222 34455567778889898986 44332 122222 2 234432 4688999999999987543 232
Q ss_pred CCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 941 VPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 941 ~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
.++++||++ .+.+|.++ ++++|++++
T Consensus 306 ~~~~iRis~---~~~~~~~~--l~~al~~~~ 331 (332)
T PRK06425 306 GEQYIRIAI---RRRSFNIK--LVNALRNFL 331 (332)
T ss_pred CCCEEEEEe---CCHHHHHH--HHHHHHHHh
Confidence 247999998 78999999 778887654
No 467
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=99.53 E-value=8.5e-13 Score=151.14 Aligned_cols=277 Identities=14% Similarity=0.109 Sum_probs=169.1
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC--
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA-- 711 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~-- 711 (985)
.++++.+++.++.+..++..+.|++ +. .++++.+. .++++|+++++.++.+...+...|.+++.+|++.
T Consensus 68 ~~lr~~ia~~~~~~~~~I~it~G~~~al---~~~~~~~~-----~~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~ 139 (357)
T PRK14809 68 ADLTAALADRWDVSPEQVWLANGGDGAL---DYLARAML-----DPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKAD 139 (357)
T ss_pred HHHHHHHHHHhCCCcceEEECCCHHHHH---HHHHHHhc-----CCCCEEEEeCCChHHHHHHHHHcCCeEEEEecccCc
Confidence 3677888888898877666655654 43 23333331 4788999998866655666778899999888853
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHc--CCEEEEEccccccccCCCCC----CccCC
Q 001989 712 KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDN--GGQVYMDGANMNAQVGLTSP----GYIGA 784 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~--galliVD~a~~~~~~~l~~p----g~~g~ 784 (985)
+..+|++++++.+ +++++|++++| |++|.+. +.+++.++++.. ++++++|+++.. +..-..+ ....-
T Consensus 140 ~~~~~~~~~~~~~----~~~k~i~l~~p~NPTG~~~-s~~~~~~l~~~~~~~~~iI~De~y~~-~~~~~~~~~~~~~~~~ 213 (357)
T PRK14809 140 DFEQTADTVLDAY----DGERIVYLTSPHNPTGSEI-PLDEVEALAERTDEETLVVVDEAYGE-FAERPSAVALVEERDD 213 (357)
T ss_pred CCCcCHHHHHHhh----cCCcEEEEeCCCCCCCcCC-CHHHHHHHHHhCccCcEEEEechhhh-ccCCchhHHHHhhCCC
Confidence 3567888877765 35788999999 5799997 677777766643 789999998742 1100000 00111
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
-+++.|+.|+|++| |.++|++++++++.+.+.... . +.+.+ .....++...+. .
T Consensus 214 vi~~~SfSK~~~~~----GlRiG~~~~~~~~~~~~~~~~--------------~--~~~~~----~~~~~~a~~~l~--~ 267 (357)
T PRK14809 214 VAVLRTFSKAYGLA----GLRLGYAVVPEEWADAYARVN--------------T--PFAAS----ELACRAGLAALD--D 267 (357)
T ss_pred EEEEecchhHhcCc----chhheeeecCHHHHHHHHHhC--------------C--CCCCC----HHHHHHHHHHhC--C
Confidence 25567888888654 678999999877655442110 0 11111 111122222221 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-CCCCCC
Q 001989 865 SKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-SWPVPG 943 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~p~~~ 943 (985)
.+-+++..+...++.+++.+.|... .++ +.+. + +.+++. +..++.+.|.++||.+... .|..++
T Consensus 268 ~~~~~~~~~~~~~~r~~l~~~L~~~---~~~-~~g~-f--~~~~~~--------~~~~~~~~l~~~gv~v~~g~~f~~~~ 332 (357)
T PRK14809 268 DEHVERTVETARWAREYIREELDAP---TWE-SAGN-F--VLAEVG--------DASAVAEAAQERGVIVRDCTSFGLPE 332 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCc---cCC-CCCC-E--EEEECC--------CHHHHHHHHHHCCEEEEECccCCCCC
Confidence 2223343444555566677777541 121 2222 2 234432 4678999999999987543 233458
Q ss_pred EEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 944 TLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 944 ~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
++|+++. +.+++++ +++.|++++
T Consensus 333 ~iRls~~---~~~~~~~--~l~~L~~~l 355 (357)
T PRK14809 333 CIRITCG---TREETER--AVEVLNEVL 355 (357)
T ss_pred eEEEecC---CHHHHHH--HHHHHHHHh
Confidence 9999974 5789999 667777655
No 468
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=99.53 E-value=2.2e-12 Score=152.46 Aligned_cols=309 Identities=15% Similarity=0.152 Sum_probs=181.7
Q ss_pred hhHHHHHHHHHHHHHHHhC----CCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHH-HCC
Q 001989 628 QGYQEMFNNLGEWLCTITG----FDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA-MCG 701 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G----~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~-~~G 701 (985)
+|..++.+.+.+++.+.+| .+...+..++|++ +....+.++ ..+||.|+++++.++.+...+. ..|
T Consensus 86 ~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l--------~~pGd~Vlv~~P~Y~~~~~~~~~~~g 157 (468)
T PLN02450 86 HGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCL--------AEPGDAFLLPTPYYPGFDRDLKWRTG 157 (468)
T ss_pred CChHHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHh--------CCCCCEEEECCCCCCchHHHHhhcCC
Confidence 5766666666666666555 3444565555554 443332222 1478999999998877766666 589
Q ss_pred cEEEEEcCC--CCCCCCHHHHHHHHHhc---CCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccc-
Q 001989 702 MKIVSVGTD--AKGNINIEELRKAAEAN---RDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNA- 772 (985)
Q Consensus 702 ~~vv~v~~d--~~g~iD~e~L~~~i~~~---~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~- 772 (985)
++++.||++ .++.+|++++++++++. ..++++|++++| |++|.+. ..+++|.++|+++|+++++|.++...
T Consensus 158 ~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~ 237 (468)
T PLN02450 158 VEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTV 237 (468)
T ss_pred cEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccc
Confidence 999999985 34678999999988631 237899999999 5799885 24778889999999999999987421
Q ss_pred ccC--CCCC----C--------ccCCcEEEeCCcccccccCCCCCCceEEEEEccc-ccCcCCCCccccCCCCCCCCCCC
Q 001989 773 QVG--LTSP----G--------YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPFLPSHPVVSTGGIPAPEKSQ 837 (985)
Q Consensus 773 ~~~--l~~p----g--------~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-l~~~lp~~~~g~~~~~~~~~~~~ 837 (985)
..+ +... . ...-=+++.|+.|.|++| |.++|+++++++ +...+... .
T Consensus 238 f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~----GlRiG~li~~~~~l~~~~~~~--------------~ 299 (468)
T PLN02450 238 FDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLP----GFRVGAIYSNDEMVVSAATKM--------------S 299 (468)
T ss_pred cCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCC----CccEEEEEECCHHHHHHHHHH--------------h
Confidence 111 1000 0 011125677888988654 789999998754 23222100 0
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccc
Q 001989 838 PLGTIAAAPWGSALILPISYTYIAMM--GSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKN 914 (985)
Q Consensus 838 ~~~~i~s~~~g~~~~~~~a~a~l~~l--g~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~ 914 (985)
....+++ ..+. ++..+|..- ..+-+++..++..++.+.+.+.|++ ++.+ ..+.+..+ +.++++....
T Consensus 300 ~~~~~s~--~~Q~----a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~gi~~--~~~~~g~f--lwi~l~~~~~ 369 (468)
T PLN02450 300 SFGLVSS--QTQY----LLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAAGIKC--LKSNAGLF--CWVDMRHLLK 369 (468)
T ss_pred hcCCCCH--HHHH----HHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--cCCCceEE--EEEEchHhcC
Confidence 0111111 1111 111222110 0012344455667777888888876 4332 22223322 2345431100
Q ss_pred cCCC-CHHHHHHHHHH-CCCccCC-CCC--CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 915 TAGI-EPEDVAKRLMD-YGFHGPT-MSW--PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 915 ~~g~-~~~~v~~~L~~-~Gi~~~~-~~~--p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.... ...++.++|.+ .|+.+.+ ..| +.++++||+++. .+++++++ .++.|++++++..
T Consensus 370 ~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g~~Rl~f~~-~~~~~l~~--~l~ri~~~l~~~~ 432 (468)
T PLN02450 370 SNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPGWFRVCFAN-MSEETLDL--AMKRLKSFVESDS 432 (468)
T ss_pred cCCchHHHHHHHHHHHhCCEEEeCccccCCCCCCEEEEEecC-CCHHHHHH--HHHHHHHHHHhcc
Confidence 0011 12456667654 7998643 222 235899999976 45788888 7788888876554
No 469
>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]
Probab=99.53 E-value=1.7e-12 Score=143.74 Aligned_cols=352 Identities=15% Similarity=0.204 Sum_probs=224.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCccc--eecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHH
Q 001989 139 MKFSKFDEGLTESQMIEHMQKLASMNKVYK--SFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNF 216 (985)
Q Consensus 139 ~~lp~~~~~~se~e~~~~~~~l~~~n~~~~--~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~ 216 (985)
..|| ..+++..++++.+.+....+..+. --.|..++. ++... .+.. +-+.-|+|..+.+.++.-+.-.|.
T Consensus 54 ~~lP--~~gl~~d~v~~~i~~~~~ld~~~~~~~vS~~v~~~---~~~~~-~l~~--~~~~k~N~l~~d~fp~~~~~e~~~ 125 (491)
T KOG1383|consen 54 FTLP--SKGLPKDAVLELINDELMLDGNPRLGLASGVVYWG---EPELD-KLIM--EAYNKFNPLHPDEFPVVRKLEAEC 125 (491)
T ss_pred ecCC--CCCCCHHHHHHHHHHHhccCCCcccCeeeEEEecC---Ccchh-hHHH--HHHhhcCccCccccchhHHHHHHH
Confidence 4577 578999999999988765543221 122444433 22221 2221 113444888888999999999999
Q ss_pred HHHHHHhcCCCCc-ceeeccchHHHHHHHHHHhhhhc----C-CCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch-
Q 001989 217 QTMIADLTGLPMS-NASLLDEGTAAAEAMAMCNNIQK----G-KKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK- 289 (985)
Q Consensus 217 q~~ia~L~g~~~~-~~sl~~~~ta~~ea~~~a~~~~~----~-~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~- 289 (985)
-.|+|.|++.+.+ ..+.+.|+|.++.++..+.+..+ + ....|+++.++|.++-. +++.++++++.++++
T Consensus 126 Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK----~a~yf~v~l~~V~~~~ 201 (491)
T KOG1383|consen 126 VNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEK----AARYFEVELREVPLDE 201 (491)
T ss_pred HHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHH----HHhhEEEEEEeeeccc
Confidence 9999999998753 45566777754333332222111 1 23456777777765444 456689999988764
Q ss_pred -----h---hhc-cCCCEeEEEEEcCC-CCeeeccHHHHHHHHHh-CCcEEEEEecCccccC---CCCCCcccce-----
Q 001989 290 -----D---IDY-KSGDVCGVLVQYPG-TEGEVLDYGDFIKNAHA-NGVKVVMATDLLALTI---LKPPGELGAD----- 350 (985)
Q Consensus 290 -----~---l~~-l~~~t~~V~v~~pn-~~G~v~di~~I~~~a~~-~galliV~a~~~~lg~---l~~~~~~GaD----- 350 (985)
| +.+ ++++|.+|+...|| ++|.++|+++|.++.-+ ++..++|++.+-++-. ...+.+||+-
T Consensus 202 ~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p~V~ 281 (491)
T KOG1383|consen 202 GDYRVDPGKVVRMIDENTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRVPGVT 281 (491)
T ss_pred cceEecHHHHHHHhccceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCccccccCCCCce
Confidence 2 334 78999999999986 58999999999999999 9999999653322211 1122344432
Q ss_pred EEEecCccccccCCCCCCcEE-EEEEchhhHhcCCCceeeeeecCCC-Cc-ceeeecccccccccccccCCCccchhHHH
Q 001989 351 IVVGSAQRFGVPMGYGGPHAA-FLATSQEYKRMMPGRIVGVSIDSSG-KP-ALRVAMQTREQHIRRDKATSNICTAQALL 427 (985)
Q Consensus 351 i~v~s~k~lg~P~~~GGP~~G-~l~~~~~~~~~lp~~~vG~t~d~~g-~~-~~~l~l~tre~~irre~atsni~t~~~l~ 427 (985)
-.-.+++++|.-+ +|++ .++..++++ |--++-- .|-.| .+ .+.+..+ ++-+
T Consensus 282 Sisa~~HKYGl~~----~G~~~vl~r~k~~~---~~q~~~~-~~w~Gg~y~s~TlngS---------R~g~--------- 335 (491)
T KOG1383|consen 282 SISADGHKYGLAP----AGSSWVLYRNKELL---PHQLFFH-TDWLGGIYASPTLNGS---------RPGS--------- 335 (491)
T ss_pred eEeeccceeeeee----cCcEEEEEcccccc---cceEEEe-ccccCccccCcccccC---------Cccc---------
Confidence 2233346665421 2344 344444432 2222110 11111 11 1222221 1111
Q ss_pred HHHHHHH--HHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC--HHHHHHHHHHcCceeeee-
Q 001989 428 ANMAAMY--AVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVV- 502 (985)
Q Consensus 428 a~~aa~~--l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~- 502 (985)
..++.| |..+|.+|+.+..+++.+.+.+|++++++++++.+++.|...-+.+.... -.++.+.|+++||.+..+
T Consensus 336 -~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~~~s~~~~i~elsd~l~~~GW~lnalq 414 (491)
T KOG1383|consen 336 -QVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKIVGKPLVSFILFGSNDVNIFELSDLLRKKGWILNALQ 414 (491)
T ss_pred -HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceecCCCcEEEEEccCCccchhhhhHHHHhcCcCccccC
Confidence 223333 57889999999999999999999999999966999876643223333333 789999999999999776
Q ss_pred cCCeEEEEeccCCCHHHH-HHHHHHHhC
Q 001989 503 DSNTVTASFDETTTLEDV-DKLFIVFAG 529 (985)
Q Consensus 503 ~~~~lris~t~~~t~edI-d~li~aL~~ 529 (985)
.|.++.+|++-.++++++ |+|+..++.
T Consensus 415 ~P~a~Hi~vt~~~~~~~~A~~~v~Di~~ 442 (491)
T KOG1383|consen 415 FPAAIHICVTRVHAREDVADRFVADIRK 442 (491)
T ss_pred CCCceEEEEEeeeccHHHHHHHHHHHHH
Confidence 367999999999999985 777777764
No 470
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.53 E-value=7.9e-13 Score=153.05 Aligned_cols=144 Identities=12% Similarity=0.066 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
..++++.++++.|...+ +.++||+.|+.++++++. .+||+||++...++..... ....|+++++++.
T Consensus 63 v~~lE~~la~leg~~~a-v~~~SG~aAi~~al~all--------~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~ 133 (432)
T PRK06702 63 LAAFEQKLAELEGGVGA-VATASGQAAIMLAVLNIC--------SSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP 133 (432)
T ss_pred HHHHHHHHHHHhCCCcE-EEECCHHHHHHHHHHHhc--------CCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECC
Confidence 45788999999998765 557788888765655442 4789999988756533333 4678999999865
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
.+|+++++++|+ ++|++|++++| |+++.+. |+++|+++||++|+++++|.+.. ...+.+|-+.|+||++
T Consensus 134 ----~~d~~~l~~~I~---~~Tk~I~~e~pgnP~~~v~-Di~~I~~iA~~~gi~livD~T~~--tP~~~~pl~~GADIvv 203 (432)
T PRK06702 134 ----NLTADEIVALAN---DKTKLVYAESLGNPAMNVL-NFKEFSDAAKELEVPFIVDNTLA--TPYLCQAFEHGANIIV 203 (432)
T ss_pred ----CCCHHHHHHhCC---cCCeEEEEEcCCCcccccc-CHHHHHHHHHHcCCEEEEECCCC--chhhCChhhcCCCEEE
Confidence 369999999998 89999999998 5788887 89999999999999999998753 3345678889999999
Q ss_pred eCCccccc
Q 001989 789 LNLHKTFC 796 (985)
Q Consensus 789 ~s~hK~l~ 796 (985)
.|..|+++
T Consensus 204 ~S~TKy~~ 211 (432)
T PRK06702 204 HSTTKYID 211 (432)
T ss_pred EccccccC
Confidence 99999985
No 471
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=99.52 E-value=1.6e-12 Score=149.07 Aligned_cols=211 Identities=19% Similarity=0.162 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH----HHHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP----ATAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~----~~a~~~G~~vv~v~~ 709 (985)
..++++.++++.|.+.+ +.++||++|..++ +++ . .++++||+++..++... ..+...|++++.++.
T Consensus 54 ~~~le~~la~l~g~~~~-~~~~sG~~ai~~~-~~l---l-----~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 123 (366)
T PRK08247 54 RGVLEQAIADLEGGDQG-FACSSGMAAIQLV-MSL---F-----RSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNT 123 (366)
T ss_pred HHHHHHHHHHHhCCCcE-EEEcCHHHHHHHH-HHH---h-----CCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECC
Confidence 45789999999999875 6667787766432 222 1 36789999877665432 234568999999886
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
.|+++++++++ ++|++|++++|+ ++|.+. |+++|+++||++|+++++|.++..+ .+..|...|+|+++
T Consensus 124 -----~d~~~l~~~i~---~~tklv~le~P~NP~~~~~-dl~~I~~la~~~g~~lIvD~t~~~~--~~~~p~~~g~di~i 192 (366)
T PRK08247 124 -----ASLKAIEQAIT---PNTKAIFIETPTNPLMQET-DIAAIAKIAKKHGLLLIVDNTFYTP--VLQRPLEEGADIVI 192 (366)
T ss_pred -----CCHHHHHHhcc---cCceEEEEECCCCCCCcHH-HHHHHHHHHHHcCCEEEEECCCccc--cccCchhcCCcEEE
Confidence 38999999997 789999999995 688887 8999999999999999999987422 23456667899999
Q ss_pred eCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.|++|+++.+ ++-.+|+++++ +++...+... + ...+...+ +. .+|..+. +-+.
T Consensus 193 ~S~sK~~~g~---~d~~~G~iv~~~~~l~~~~~~~------------~-~~~g~~~s-----~~---~a~l~~~--~l~t 246 (366)
T PRK08247 193 HSATKYLGGH---NDVLAGLVVAKGQELCERLAYY------------Q-NAAGAVLS-----PF---DSWLLIR--GMKT 246 (366)
T ss_pred eecceeccCC---CceeeeEEecChHHHHHHHHHH------------H-HhcCCCCC-----hH---HHHHHHh--ccCc
Confidence 9999998511 22246777775 4443322100 0 00111111 11 1233333 3334
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC
Q 001989 868 LTEASKIAILNANYMAKRLEKHYP 891 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g~~ 891 (985)
+..+.++..++++.+.+.|++..+
T Consensus 247 l~~r~~~~~~~a~~l~~~L~~~p~ 270 (366)
T PRK08247 247 LALRMRQHEENAKAIAAFLNEQPG 270 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 555666778899999999987433
No 472
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=99.52 E-value=8.6e-13 Score=146.75 Aligned_cols=161 Identities=22% Similarity=0.200 Sum_probs=130.9
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchhhhc
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKDIDY 293 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~l~~ 293 (985)
..+++.+++|.|++. +.++++|.+++.+++..+. ..+++||.....+..+...++.....+|++...+|++++++
T Consensus 80 ~~le~~iaal~ga~~--~l~fsSGmaA~~~al~~L~---~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~~~~~ 154 (409)
T KOG0053|consen 80 DVLESGIAALEGAAH--ALLFSSGMAAITVALLHLL---PAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVDDLKK 154 (409)
T ss_pred HHHHHHHHHHhCCce--EEEecccHHHHHHHHHHhc---CCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechhhHHH
Confidence 346689999999876 6788899877777666543 37899999999999999998888888999999999876653
Q ss_pred ----cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 294 ----KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 294 ----l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+.++|++|++..| |++..+.||++|+++||++|++++|| +.++-++..+|-.+|||||+.|+ |.|++.-..
T Consensus 155 ~~~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVD-nTf~~p~~~~pL~lGADIV~hSaTKyi~Ghsdv-- 231 (409)
T KOG0053|consen 155 ILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVD-NTFGSPYNQDPLPLGADIVVHSATKYIGGHSDV-- 231 (409)
T ss_pred HHHhhccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEe-CCcCcccccChhhcCCCEEEEeeeeeecCCcce--
Confidence 6788999999998 89999999999999999999999995 56666677889999999999998 888754321
Q ss_pred CcEEEEEEc-hhhHhcC
Q 001989 368 PHAAFLATS-QEYKRMM 383 (985)
Q Consensus 368 P~~G~l~~~-~~~~~~l 383 (985)
-+|.++++ +++.+++
T Consensus 232 -i~G~iv~n~~~~~~~l 247 (409)
T KOG0053|consen 232 -IGGSVVLNSEELASRL 247 (409)
T ss_pred -eeeEEecCcHHHHHHH
Confidence 23566665 5555544
No 473
>PRK06225 aspartate aminotransferase; Provisional
Probab=99.52 E-value=1e-11 Score=143.43 Aligned_cols=306 Identities=11% Similarity=0.092 Sum_probs=184.1
Q ss_pred cCCCCCCCCCcHHHHHHHHhC--CccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHh
Q 001989 171 IGMGYYNTHVPPVILRNIMEN--PAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~--~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~ 248 (985)
+|.|..+...|+.+.+++..- ...+..|.+. +| ..++++.+|+++|.++.++.+++|+|.++..++.++
T Consensus 33 l~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~-----~g----~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~ 103 (380)
T PRK06225 33 MGQNTNHLGPHEEVREAMIRCIEEGEYCKYPPP-----EG----FPELRELILKDLGLDDDEALITAGATESLYLVMRAF 103 (380)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCC-----cc----hHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHh
Confidence 456655555666665443321 1222333221 12 456788999999999999999999997766655443
Q ss_pred hhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-----------hhhhc-cCCCEeEEEEEcC-CCCeeec--
Q 001989 249 NIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-----------KDIDY-KSGDVCGVLVQYP-GTEGEVL-- 313 (985)
Q Consensus 249 ~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-----------~~l~~-l~~~t~~V~v~~p-n~~G~v~-- 313 (985)
. ++||+|++++..|......++ ..|.+++.++. +++++ +++++++|++.+| |.+|.+.
T Consensus 104 -~--~~gd~vl~~~p~y~~~~~~~~----~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~ 176 (380)
T PRK06225 104 -L--SPGDNAVTPDPGYLIIDNFAS----RFGAEVIEVPIYSEECNYKLTPELVKENMDENTRLIYLIDPLNPLGSSYTE 176 (380)
T ss_pred -c--CCCCEEEEcCCCCcchHHHHH----HhCceEEeeccccccCCccCCHHHHHhhcCCCceEEEEeCCCCCCCcCCCH
Confidence 1 378999999988876554443 45777776653 23444 6778999988888 6899864
Q ss_pred -cHHHHHHHHHhCCcEEEEEecCc--cccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCcee
Q 001989 314 -DYGDFIKNAHANGVKVVMATDLL--ALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIV 388 (985)
Q Consensus 314 -di~~I~~~a~~~galliV~a~~~--~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~v 388 (985)
++++|+++|+++|+++++|.-.. ..+... ........+++.+. |.|+.| |-.+|++++++++++.+....
T Consensus 177 ~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~----G~RiG~i~~~~~l~~~~~~~~- 251 (380)
T PRK06225 177 EEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSFSKIFGMA----GLRIGAVVATPDLIEVVKSIV- 251 (380)
T ss_pred HHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCCCCEEEEeechhhcCCc----cceeEEEecCHHHHHHHHHHH-
Confidence 69999999999999999953110 011000 00011345677775 877432 334699999888776552100
Q ss_pred eeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeE
Q 001989 389 GVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 389 G~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
+...+++...... +...+.. ..+-++++.+...++.+++.+.|+++.++.
T Consensus 252 ----------------------------~~~~~~~~~~~~~-a~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 301 (380)
T PRK06225 252 ----------------------------INDLGTNVIAQEA-AIAGLKV-KDEWIDRIRRTTFKNQKLIKEAVDEIEGVF 301 (380)
T ss_pred ----------------------------hcccCCCHHHHHH-HHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCcCCc
Confidence 0011122211111 1111111 112234555555666778888888752243
Q ss_pred Ec-CCCCcceEEEecC----CHHHHHHHHHHcCceeeee-------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 469 VQ-GLPFFDTVKVKCA----DAHAIASAAYKIEMNLRVV-------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 469 ~~-~~~~~~~~~~~~~----~~~~v~~~L~~~GI~~~~~-------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+. .++...-+.+..+ +..++.++|.++||.+... ..+.+|+++. .++||+++++++|..
T Consensus 302 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~~--~~~e~l~~~~~~l~~ 372 (380)
T PRK06225 302 LPVYPSHGNMMVIDISEAGIDPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVSFS--IPREQVEVFCEEFPD 372 (380)
T ss_pred cccCCCCCeEEEEEcccccCCHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEEeC--CCHHHHHHHHHHHHH
Confidence 21 1111122333332 2788999999999987542 1358999986 378999999999974
No 474
>PLN02452 phosphoserine transaminase
Probab=99.51 E-value=1.9e-12 Score=147.33 Aligned_cols=281 Identities=13% Similarity=0.056 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHHhcCCCCc--ceeeccchHHHHHHHHHHhhhhcCCCCEEE-EcCCCChh-HHHHHHHhhcCCCeEEEE
Q 001989 210 LESLLNFQTMIADLTGLPMS--NASLLDEGTAAAEAMAMCNNIQKGKKKTFI-IASNCHPQ-TIDICITRADGFDIKVVV 285 (985)
Q Consensus 210 l~~i~e~q~~ia~L~g~~~~--~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vl-v~~~~H~s-~~~~~~~~a~~~gi~v~~ 285 (985)
.+.+.+.++.+.+|++.+.. -+.+..|||.++|++.+.+- . ++++++ +..+.+.. ..+. ++.+|...+.
T Consensus 51 ~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl~-~--~~~~~l~~~~G~fg~r~~~~----a~~~g~~~~~ 123 (365)
T PLN02452 51 LSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNLC-K--PGDKADFVVTGSWSKKAAKE----AKKYCKTNVI 123 (365)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhcC-C--CCCeEEEEECCHHHHHHHHH----HHHhCCCcEE
Confidence 47888899999999998643 24455888999999888652 2 567664 55555533 2233 3344543333
Q ss_pred eC--c------hhhhc--cCCCEeEEEEEcC-CCCee-eccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEE
Q 001989 286 SD--L------KDIDY--KSGDVCGVLVQYP-GTEGE-VLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIV 352 (985)
Q Consensus 286 v~--~------~~l~~--l~~~t~~V~v~~p-n~~G~-v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~ 352 (985)
.. . -++++ .+++.+.|.+++. +.+|+ +.|++++++ ++++||+ ..++|.. .+..+||+|+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~hnETstGv~~~~~~~i~~------~~lvVDa-~Ss~g~~pidv~~~~v~~- 195 (365)
T PLN02452 124 ASGKDEKYTKIPSVSEWELTPDAKFVHICANETIHGVEFKDYPDVGN------VPLVADM-SSNFLSKPVDVSKYGVIY- 195 (365)
T ss_pred EecCCCCCCCCCChHHcCCCCCCcEEEECCCCCCCcEecCcccccCC------CeEEEEC-CccccCcccCHHHcCEEE-
Confidence 21 1 12222 3556778877665 77999 589988863 7888854 3344433 3557899877
Q ss_pred EecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 353 VGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 353 v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
.++||. +|.||+|++++|+++++++++.. + ..+++....++ ..-..|+|+ ..++++.++
T Consensus 196 -~saqK~-----lGP~Gl~~v~vr~~~l~~~~~~~----------~-~~~~~~~~~~~-~s~~~TP~v---~~i~~l~~a 254 (365)
T PLN02452 196 -AGAQKN-----VGPSGVTIVIIRKDLIGNARPIT----------P-GMLDYKIHAEN-DSLYNTPPC---FGIYMCGLV 254 (365)
T ss_pred -Eecccc-----cCCCCeEEEEEcHHHHhhcccCC----------C-chhhHHHHHhc-CCccCChhH---HHHHHHHHH
Confidence 467553 23468999999999988764311 1 12222111111 011245555 677777777
Q ss_pred HHHHHhCcc-hHHHHHHHHHHHHHHHHHHHhcC-CCe-EE-cCC--CCcceEEEecCC---HHHHHHHHHHcCceeee--
Q 001989 433 MYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKL-GTV-EV-QGL--PFFDTVKVKCAD---AHAIASAAYKIEMNLRV-- 501 (985)
Q Consensus 433 ~~l~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~-g~~-~~-~~~--~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~-- 501 (985)
+ .++..+ |++++.+++.+++++|++.|++. | + .. .++ .....++|..++ ..++.+.+.++|+..-.
T Consensus 255 L--~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G-~y~~~~~~~~rs~~~vsF~~~~~~~~~~f~~~~~~~g~~~~~G~ 331 (365)
T PLN02452 255 F--EDLLAQGGLKAMEKRNIRKADLLYDAIDESNG-FYVCPVEKSVRSLMNVPFTLGGSELEAEFVKEAAKAGMVQLKGH 331 (365)
T ss_pred H--HHHHHccCHHHHHHHHHHHHHHHHHHHHhCCC-cccCCCChHHhCCeEEEEEcCCchhHHHHHHHHHHCCCcccCCc
Confidence 6 666565 89999999999999999999986 5 6 21 111 112246677665 77889999999996522
Q ss_pred ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..-+.+|+|.--..+.|++++|++.+++
T Consensus 332 r~~gg~R~s~yna~~~~~v~~L~~~m~~ 359 (365)
T PLN02452 332 RSVGGMRASIYNAMPLAGVEKLVAFMKD 359 (365)
T ss_pred cccCceEEECcCCCCHHHHHHHHHHHHH
Confidence 1123499999989999999999999874
No 475
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=99.51 E-value=1.3e-12 Score=149.34 Aligned_cols=207 Identities=19% Similarity=0.152 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHH----HCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA----MCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~----~~G~~vv~v~~ 709 (985)
..++++.++++.|.+.+ +.++||.+|+..++. + + ++||+||++...+|....... ..++++.+
T Consensus 56 ~~~le~~lA~leg~~~~-v~~~sG~aAi~~~l~-~--l------~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~~~~--- 122 (364)
T PRK07269 56 RAKLEETLAAIESADYA-LATSSGMSAIVLAFS-V--F------PVGSKVVAVRDLYGGSFRWFNQQEKEGRFHFTY--- 122 (364)
T ss_pred HHHHHHHHHHHhCCCeE-EEeCCHHHHHHHHHH-H--h------CCCCEEEEecCCcCchHHHHHHHHhcCcEEEEe---
Confidence 45788999999987654 556778777644332 1 1 367899998776665444321 11333222
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
..|+++++++|+ ++|++|++++|+ ++|.+. |+++|+++||++|+++++|.++.. .....|-..|+|+++
T Consensus 123 ----~~d~~~l~~~i~---~~TklV~lesP~NPtg~~~-di~~I~~la~~~gi~vvvD~t~~~--~~~~~pl~~gaDivv 192 (364)
T PRK07269 123 ----ANTEEELIAAIE---EDTDIVYIETPTNPLMVEF-DIEKVAKLAHAKGAKVIVDNTFYS--PIYQRPIELGADIVL 192 (364)
T ss_pred ----cCCHHHHHHhcC---cCceEEEEECCCCCCCeee-CHHHHHHHHHHcCCEEEEECCCcc--cccCCchhhCCcEEE
Confidence 248999999998 899999999995 689887 999999999999999999998642 223466678999999
Q ss_pred eCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
+|++|+++.+ |.--+|+++++ +++.+.+.. . + ...+...+ + ..|| +...|-+.
T Consensus 193 ~S~tK~l~g~---~d~~gG~v~~~~~~l~~~~~~-~-----------~-~~~G~~~s-----~---~~a~--l~~~~L~t 246 (364)
T PRK07269 193 HSATKYLSGH---NDVLAGVVVTNDLELYEKLFY-N-----------L-NTTGAVLS-----P---FDSY--LLMRGLKT 246 (364)
T ss_pred ecCceeccCC---CcccceEEEeCcHHHHHHHHH-H-----------H-HHhCCCCC-----H---HHHH--HHHcCCCc
Confidence 9999999521 11125677775 344333310 0 0 00111111 1 1223 34444456
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 001989 868 LTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g 889 (985)
+..+.++..+++.++++.|++.
T Consensus 247 L~~r~~~~~~na~~~a~~L~~~ 268 (364)
T PRK07269 247 LSLRMERSTANAQEVVAFLKKS 268 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 7778888999999999999863
No 476
>PRK09105 putative aminotransferase; Provisional
Probab=99.51 E-value=7.4e-12 Score=143.96 Aligned_cols=297 Identities=13% Similarity=0.096 Sum_probs=187.9
Q ss_pred ecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh
Q 001989 170 FIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN 249 (985)
Q Consensus 170 ~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~ 249 (985)
+++.|..+...|+.+.+++...- .....|.+. . ..++++.+|+.+|.++.++.+++|++.++..++.++
T Consensus 47 ~l~~~~~~~~~~~~~~~a~~~~~---~~~~~Y~~~------~-~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l- 115 (370)
T PRK09105 47 FLNANECPLGPSPAARDAAARSA---ALSGRYDLE------L-EDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAF- 115 (370)
T ss_pred EecCCCCCCCCCHHHHHHHHHHH---HHhcCCCCc------h-HHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHH-
Confidence 45555545556666654544321 111123211 1 446778899999999999999999997776655544
Q ss_pred hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch--------hhhccCCCEeEEEEEcC-CCCeeeccHHHHHH
Q 001989 250 IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--------DIDYKSGDVCGVLVQYP-GTEGEVLDYGDFIK 320 (985)
Q Consensus 250 ~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~--------~l~~l~~~t~~V~v~~p-n~~G~v~di~~I~~ 320 (985)
. ++||+|++++-.|+.+...++ ..|++++.++.+ ++++..+++++|++.+| |.+|.+.+.++|.+
T Consensus 116 ~--~~gd~Vli~~P~y~~~~~~~~----~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~v~l~nP~NPTG~~~~~~~l~~ 189 (370)
T PRK09105 116 T--SPTAGLVTADPTYEAGWRAAD----AQGAPVAKVPLRADGAHDVKAMLAADPNAGLIYICNPNNPTGTVTPRADIEW 189 (370)
T ss_pred c--CCCCEEEEeCCChHHHHHHHH----HcCCeEEEecCCCCCCCCHHHHHhcCCCCCEEEEeCCCCCCCcCcCHHHHHH
Confidence 2 378999999999998877654 468888887552 23222356888999998 78999998888887
Q ss_pred HHHh--CCcEEEEEecCccccCCCCCC---cccceEEEe-cC-ccccccCCCCCCc--EEEEEEchhhHhcCCCceeeee
Q 001989 321 NAHA--NGVKVVMATDLLALTILKPPG---ELGADIVVG-SA-QRFGVPMGYGGPH--AAFLATSQEYKRMMPGRIVGVS 391 (985)
Q Consensus 321 ~a~~--~galliV~a~~~~lg~l~~~~---~~GaDi~v~-s~-k~lg~P~~~GGP~--~G~l~~~~~~~~~lp~~~vG~t 391 (985)
+++. +|+++++|.-...+....+.. +.+-++++. |. |.||. || +|++++++++++.+-.
T Consensus 190 l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~~g~------~GlRiG~~v~~~~~i~~l~~------ 257 (370)
T PRK09105 190 LLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKLYGM------AGMRLGLAAARPDLLAKLAR------ 257 (370)
T ss_pred HHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEEEEecccHhhcC------CccceeeeecCHHHHHHHHh------
Confidence 7654 488898853111221111111 234566554 44 66643 45 7999988777665410
Q ss_pred ecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC
Q 001989 392 IDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG 471 (985)
Q Consensus 392 ~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~ 471 (985)
. ...+.+ .. +..+++ ..+..++-+++..++..++.+++.+.|++.| +++..
T Consensus 258 ----------------------~-~~~~~~-~~---~~~aa~-~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~g-~~~~~ 308 (370)
T PRK09105 258 ----------------------F-GHNPLP-VP---AAAAGL-ASLRDPKLVPQRRAENAAVREDTIAWLKKKG-YKCTP 308 (370)
T ss_pred ----------------------c-CCCCcC-HH---HHHHHH-HHHhCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCcCC
Confidence 0 011111 11 112222 1122233456667778888899999999887 77653
Q ss_pred CCCcceEEEecCC-HHHHHHHHHHcCceeeee---cCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 472 LPFFDTVKVKCAD-AHAIASAAYKIEMNLRVV---DSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 472 ~~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~~---~~~~lris~t~~~t~edId~li~aL~ 528 (985)
+..+-+.++.+. ..++.+.|.++||.++.. .++.+|+++. +++++++|+++|.
T Consensus 309 -~~~~f~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~Ris~~---~~~~~~~l~~al~ 365 (370)
T PRK09105 309 -SQANCFMVDVKRPAKAVADAMAKQGVFIGRSWPIWPNWVRVTVG---SEEEMAAFRSAFA 365 (370)
T ss_pred -CCCcEEEEeCCCCHHHHHHHHHHCCcEEecCCCCCCCeEEEEcC---CHHHHHHHHHHHH
Confidence 222223455543 788999999999988432 2578999977 6889999999986
No 477
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=99.51 E-value=4.8e-12 Score=148.19 Aligned_cols=295 Identities=15% Similarity=0.165 Sum_probs=173.8
Q ss_pred HHHHHHHHHhCCCc--cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCC------------
Q 001989 636 NLGEWLCTITGFDS--FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCG------------ 701 (985)
Q Consensus 636 e~~~~la~l~G~~~--~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G------------ 701 (985)
++.++++++.+.+. ..++.+||++|++.+++.+|.+. ++++.|.+...+||.........+
T Consensus 88 ~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~-----~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~ 162 (425)
T PRK08088 88 ELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT-----KRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLM 162 (425)
T ss_pred HHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHh-----CCCeEEEECCccCCccHHHHHhhCCCCccccCCCCC
Confidence 67788888876432 45778999999999999888762 133344557789998765543211
Q ss_pred ---cEEEEEcCCCCCCCC----HHHHHHHHHh--cCCCEEEEEEEcC-CCccccc---cCHHHHHHHHHHcCCEEEEEcc
Q 001989 702 ---MKIVSVGTDAKGNIN----IEELRKAAEA--NRDNLSTLMVTYP-STHGVYE---EGIDEICKIIHDNGGQVYMDGA 768 (985)
Q Consensus 702 ---~~vv~v~~d~~g~iD----~e~L~~~i~~--~~~~t~~Vvv~~p-n~~G~i~---~di~eI~~la~~~galliVD~a 768 (985)
+....+|.+.++ .+ +++|+++++. +.++.++|+++-. +..|.+. ..+++|.++|+++|++++.|.+
T Consensus 163 ~~~~~~~~~p~~~~~-~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev 241 (425)
T PRK08088 163 PGHVYRALYPCPLHG-VSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEV 241 (425)
T ss_pred CCCcEEcCCCccccC-ccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 111112222221 22 5668888862 2356777777543 2345543 1389999999999999999998
Q ss_pred ccccccCCCCCC------cc--CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCC
Q 001989 769 NMNAQVGLTSPG------YI--GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG 840 (985)
Q Consensus 769 ~~~~~~~l~~pg------~~--g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~ 840 (985)
+. + +.+++ .. -+|+.++ .|.++ +|..+|++++++++.+.+..... ..
T Consensus 242 ~~-g---~g~~g~~~~~~~~~~~pdi~s~--sK~l~-----~G~rig~v~~~~~~~~~~~~~~~--------------~~ 296 (425)
T PRK08088 242 QT-G---AGRTGTLFAMEQMGVAADLTTF--AKSIA-----GGFPLAGVTGRAEVMDAIAPGGL--------------GG 296 (425)
T ss_pred cc-C---CCcCcchhHHhhcCCCCCEEEE--ecccc-----CCCcceeeEecHHHHhhcCCCCC--------------CC
Confidence 74 2 22222 12 2565544 58874 45678999998877665532110 01
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc---cCCee--ecCCCCceeeEEEEEecC-c--
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---HYPIL--FRGVNGTVAHEFIVDLRG-L-- 912 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~---g~~l~--~~~~~~~~~~~~iv~~~~-~-- 912 (985)
. +.++++.++++.++|..+..+.+. ++..+..+++.+.|.+ .++.+ ..+. +.. +.+.+.. .
T Consensus 297 t----~~~~~~~~~a~~~~l~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~~~~~~~v~g~-G~~---~~l~l~~~~~~ 365 (425)
T PRK08088 297 T----YAGNPIACAAALAVLKVFEQENLL---QKANALGEKLKDGLLAIAEKHPEIGDVRGL-GAM---IAIELFEDGDH 365 (425)
T ss_pred C----CCcCHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHhCCCeEEEecc-ceE---EEEEEecCCCC
Confidence 1 122444455556667665444333 3444445555555543 22221 1121 222 2333310 0
Q ss_pred cccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 913 KNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 913 ~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+.+.......+.+.+.++|+.+.... +..+.+|++++...|++||++ .++.|+++++.+|
T Consensus 366 ~~p~~~~~~~l~~~~~~~Gv~~~~~~-~~~~~iRl~~~~~~t~~ei~~--~i~~l~~~l~~~~ 425 (425)
T PRK08088 366 SKPNAKLTAQIVARARDKGLILLSCG-PYYNVLRILVPLTIEDAQIRQ--GLEIIAQCFDEAK 425 (425)
T ss_pred CCCCHHHHHHHHHHHHhCCCEEecCC-CCCCEEEEECCCCcCHHHHHH--HHHHHHHHHHhhC
Confidence 00001225678889999998764321 113899999999999999999 7888998887654
No 478
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=99.51 E-value=2.3e-12 Score=149.37 Aligned_cols=301 Identities=17% Similarity=0.187 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC--
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA-- 711 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~-- 711 (985)
+.++++.+++++|.+.+ +.+++|+.|+..+++++. ++||+| ++++.+.++.......|++++.+++++
T Consensus 55 ~~~Leeaia~~~g~~~v-v~t~~Gt~Al~la~~al~--------~pGD~V-~~~~~f~~~~~~i~~~Ga~pv~v~i~~~~ 124 (431)
T cd00617 55 FYDLEDAVQDLFGFKHI-IPTHQGRGAENILFSILL--------KPGRTV-PSNMHFDTTRGHIEANGAVPVDLVIDEAH 124 (431)
T ss_pred HHHHHHHHHHHHCCCeE-EEcCCHHHHHHHHHHHhC--------CCCCEE-ccCCcccchHHHHHhCCCEeEEEeccccc
Confidence 34788899999998764 556778888865554431 477866 566544455556788999999998863
Q ss_pred --------CCCCCHHHHHHHHHhc-CCCEEEEEEEcCC-Cc-cccc--cCHHHHHHHHHHcCCEEEEEcccccc--c---
Q 001989 712 --------KGNINIEELRKAAEAN-RDNLSTLMVTYPS-TH-GVYE--EGIDEICKIIHDNGGQVYMDGANMNA--Q--- 773 (985)
Q Consensus 712 --------~g~iD~e~L~~~i~~~-~~~t~~Vvv~~pn-~~-G~i~--~di~eI~~la~~~galliVD~a~~~~--~--- 773 (985)
.|.+|+++|+++|++. .+++++|++++|+ .+ |..- .++++|.++|+++|++||.|+++... .
T Consensus 125 ~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~ 204 (431)
T cd00617 125 DAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIK 204 (431)
T ss_pred ccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhh
Confidence 3569999999999732 2348899999985 45 6653 25778999999999999999997521 1
Q ss_pred ---cCCC--CCCc------cCCcEEEeCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCC
Q 001989 774 ---VGLT--SPGY------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGT 841 (985)
Q Consensus 774 ---~~l~--~pg~------~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~ 841 (985)
.+.. .+++ -..|.+++|++|.++ +|-+|+++.++ ++...+....+.. . .....+.
T Consensus 205 ~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~------~~~GG~i~~~d~~l~~~~~~~~~~~-~------~~~~~gG 271 (431)
T cd00617 205 EREEGYRDKSIAEIAREMFSYADGCTMSAKKDGL------VNIGGFLALRDDELYEEARQRVVLY-E------GFVTYGG 271 (431)
T ss_pred cccccccCCCHHHHHHHhhccCCEEEEEeecCCC------CccceEEEeCcHHHHHHHHHhcccc-C------Ccccccc
Confidence 1111 1111 147999999999764 34457888886 4655443211000 0 0000011
Q ss_pred CCCcchhhhHHHHHHHH-HHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccc---cC
Q 001989 842 IAAAPWGSALILPISYT-YIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKN---TA 916 (985)
Q Consensus 842 i~s~~~g~~~~~~~a~a-~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~---~~ 916 (985)
.. ..-..|.+ .|..... .+..++..+++++|.++|++ |+.+.. |.+. |-+.++.+.+.. ..
T Consensus 272 ~~-------~r~~~A~A~gL~e~~~---~~~l~~~~~~r~~l~~~L~~~G~~v~~--P~Gg--h~v~~d~~~~~~~~~~~ 337 (431)
T cd00617 272 MA-------GRDMEALAQGLREAVE---EDYLRHRVEQVRYLGDRLDEAGVPIVE--PAGG--HAVFIDAREFLPHIPQE 337 (431)
T ss_pred cc-------HHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHCCCCccC--CCcc--eEEEEEhHHhcCCCCcc
Confidence 11 11111111 2221111 12334455567999999987 766543 2232 345677653211 01
Q ss_pred CCCHHHHHHHHHH-CCCccC---CCCC---C--------CCCEEEEeccC-CCCHHHHHHHHccCChhHHHHh
Q 001989 917 GIEPEDVAKRLMD-YGFHGP---TMSW---P--------VPGTLMIEPTE-SESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 917 g~~~~~v~~~L~~-~Gi~~~---~~~~---p--------~~~~lris~t~-~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+.++.+++.+|.+ .||.+. .+.+ | ..+.+|+.++- .-|.+++|. .++.++.++++
T Consensus 338 ~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~--~~~~~~~~~~~ 408 (431)
T cd00617 338 QFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDY--VAAAVIALYER 408 (431)
T ss_pred cCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEeccccccCHHHHHH--HHHHHHHHHhh
Confidence 2357788877665 477742 2211 1 23679999884 679999999 77777777765
No 479
>PTZ00376 aspartate aminotransferase; Provisional
Probab=99.51 E-value=7e-13 Score=154.37 Aligned_cols=300 Identities=11% Similarity=0.079 Sum_probs=172.7
Q ss_pred hhhHHHHHHHHHHHHHHHhC--CCcccee---cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCC
Q 001989 627 AQGYQEMFNNLGEWLCTITG--FDSFSLQ---PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCG 701 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G--~~~~~~~---~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G 701 (985)
.+|..++.+.+.+++.+..+ .+...+. ..+|++|...++++++.+. ++||+|+++++.+..+...++..|
T Consensus 71 ~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~-----~~Gd~Vlv~~P~y~~~~~~~~~~G 145 (404)
T PTZ00376 71 IEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFL-----PAGTTVYVSNPTWPNHVNIFKSAG 145 (404)
T ss_pred CCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhc-----CCCCEEEEcCCCchhHHHHHHHcC
Confidence 46766555555554433222 1222333 3444455544444444432 478999999998888888889999
Q ss_pred cEEEEEcCC--CCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC
Q 001989 702 MKIVSVGTD--AKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG 775 (985)
Q Consensus 702 ~~vv~v~~d--~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~ 775 (985)
++++.+|.. .++.+|++.+++++.+.+++++++++.+| |++|.+- .++++|.++|+++|+++++|.++..-. .+
T Consensus 146 ~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~ 225 (404)
T PTZ00376 146 LNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGD 225 (404)
T ss_pred CceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCC
Confidence 999999983 24789999999999644345677777888 5799985 257888999999999999999863110 00
Q ss_pred C----CCC---CccCC-cEEEeCCcccccccCCCCCCceEEEE---EcccccCcCCCCccccCCCCCCCCCCCCCCCCCC
Q 001989 776 L----TSP---GYIGA-DVCHLNLHKTFCIPHGGGGPGMGPIG---VKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAA 844 (985)
Q Consensus 776 l----~~p---g~~g~-Di~~~s~hK~l~~p~g~GGPg~G~i~---~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s 844 (985)
. ... ...+. =+++.|+.|+|++| |.++|++. .++++.+.+-...... . + ....+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~----GlRvG~~~~~~~~~~~~~~l~~~~~~~-~------~-~~~~~~~- 292 (404)
T PTZ00376 226 LDKDAYAIRLFAERGVEFLVAQSFSKNMGLY----GERIGALHIVCANKEEAANVLSQLKLI-I------R-PMYSSPP- 292 (404)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCccccc----ccccceEEEEeCCHHHHHHHHHHHHHH-H------h-hhcCCCc-
Confidence 0 000 01111 26678889998765 78999984 3444322111000000 0 0 0001111
Q ss_pred cchhhhHHHHHHHHHHHHhcH------HHHHHHHHHHHHHHHHHHHHhhc-cCC--eeecCCCCceeeEEEEEecCcccc
Q 001989 845 APWGSALILPISYTYIAMMGS------KGLTEASKIAILNANYMAKRLEK-HYP--ILFRGVNGTVAHEFIVDLRGLKNT 915 (985)
Q Consensus 845 ~~~g~~~~~~~a~a~l~~lg~------eGl~~~~~~~~~~a~~l~~~L~~-g~~--l~~~~~~~~~~~~~iv~~~~~~~~ 915 (985)
..++ .++..++.. +. +-+++..++..++++.+.+.|++ +.. +.+..+.+.++ +.+.
T Consensus 293 -~~~q----~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~p~gg~f--~~~~------- 357 (404)
T PTZ00376 293 -IHGA----RIADRILSD-PELRAEWLSELKEMSGRIQNMRQLLYDELKALGSPGDWEHIINQIGMF--SFTG------- 357 (404)
T ss_pred -hHHH----HHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCceEE--EecC-------
Confidence 1111 111122211 10 11333344567778888888876 222 11112222222 1122
Q ss_pred CCCCHHHHHHHHHHC-CCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 916 AGIEPEDVAKRLMDY-GFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 916 ~g~~~~~v~~~L~~~-Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.+ .+++++|.++ |+.+.. +. ||+++. .++++++. +++.|++++.
T Consensus 358 --~~-~~~~~~L~~~~~v~v~p------~~-Ris~~~-~~~~~~~~--~~~~l~~~~~ 402 (404)
T PTZ00376 358 --LT-KEQVERLIEKYHIYLLD------NG-RISVAG-LTSKNVDY--VAEAIHDVVR 402 (404)
T ss_pred --CC-HHHHHHHHHhCCEeecC------CC-eEEEec-cCHHhHHH--HHHHHHHHHh
Confidence 22 4678888877 887632 22 888844 68999999 7888887764
No 480
>PRK07671 cystathionine beta-lyase; Provisional
Probab=99.50 E-value=4.6e-13 Score=153.89 Aligned_cols=205 Identities=22% Similarity=0.200 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCc-ccHH---HHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHG-TNPA---TAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg-~~~~---~a~~~G~~vv~v~~ 709 (985)
..++++.++++.|.+.. +.+++|+.+..+++ ... .++++||+++..|+ ++.. .+...|++++.++.
T Consensus 52 ~~~Le~~lA~l~g~~~~-~~~~sG~aai~~~~----~~l-----~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 121 (377)
T PRK07671 52 RAALEELIAVLEGGHAG-FAFGSGMAAITAVM----MLF-----SSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDT 121 (377)
T ss_pred HHHHHHHHHHHhCCCce-EEeCCHHHHHHHHH----HHh-----CCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECC
Confidence 45789999999998764 55667776553222 111 36889999887776 3322 23457999998875
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
.|+++++++++ ++|++|++++| |++|.+. |+++|+++|+++|+++++|+++.. +....|..+|+|+++
T Consensus 122 -----~d~~~l~~ai~---~~tklV~le~P~NPtg~~~-dl~~I~~la~~~g~~lvvD~a~~~--~~~~~p~~~g~Divv 190 (377)
T PRK07671 122 -----SNLEEVEEAIR---PNTKAIYVETPTNPLLKIT-DIKKISTIAKEKGLLTIVDNTFMT--PYWQSPISLGADIVL 190 (377)
T ss_pred -----CCHHHHHHhcC---CCCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEECCCCc--cccCChhhhCCeEEE
Confidence 38999999997 78999999999 4689987 999999999999999999998742 223456678999999
Q ss_pred eCCcccccccCCCCCC---ceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 789 LNLHKTFCIPHGGGGP---GMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGP---g~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
.|++|+|+ || ..|++++++ ++.+.+... + ..++...+ + ..+|..+ .|
T Consensus 191 ~S~sK~l~------G~~~~~~G~~v~~~~~l~~~~~~~------------~-~~~g~~~~-----~---~~a~l~~--~~ 241 (377)
T PRK07671 191 HSATKYLG------GHSDVVAGLVVVNSPELAEDLHFV------------Q-NSTGGILG-----P---QDSWLLL--RG 241 (377)
T ss_pred ecCccccc------CCccceeEEEEeCcHHHHHHHHHH------------H-HhhcCCCC-----H---HHHHHHH--cC
Confidence 99999984 44 256666653 443332100 0 01111111 1 1234333 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 001989 865 SKGLTEASKIAILNANYMAKRLEK 888 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~ 888 (985)
.+.+..+.++..+++..+.+.|++
T Consensus 242 l~tl~~R~~~~~~na~~la~~L~~ 265 (377)
T PRK07671 242 LKTLGIRMEEHETNSRAIAEFLNN 265 (377)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHc
Confidence 444566777888999999999986
No 481
>PRK06460 hypothetical protein; Provisional
Probab=99.50 E-value=7.5e-13 Score=152.16 Aligned_cols=210 Identities=16% Similarity=0.152 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCc-ccH---HHHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHG-TNP---ATAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg-~~~---~~a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+.. +.+++|++|+..++.++ . +++|+||++.+.++ ++. ..++..|++++.++.
T Consensus 47 ~~~L~~~lA~l~g~~~~-v~~~sG~~ai~~~l~al---~-----~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~ 117 (376)
T PRK06460 47 VLELTKKIVELENAEMG-VAFSSGMGAISTTALAL---L-----KPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNP 117 (376)
T ss_pred HHHHHHHHHHHhCCCcE-EEeCCHHHHHHHHHHHH---h-----CCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECC
Confidence 45788999999998764 44567776664444333 1 47789999765443 332 335678999988886
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |.+.+++.++ ++|++|++++| |++|.+. |+++|+++|+++|+++++|+++.... ...+..+++|+++
T Consensus 118 ~-----~~~~l~~~~~---~~tklV~l~sp~NPtG~v~-d~~~I~~la~~~g~~vivDea~~~~~--~~~~l~~~~divv 186 (376)
T PRK06460 118 G-----SDNIIEKAKS---KRYDVVFVENITNPLLRVV-DITELSKVCKENGSILIVDATFSTPI--NQKPLELGADIVV 186 (376)
T ss_pred C-----CHHHHHHhcC---CCceEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEECCcCccc--cCChhhcCCCEEE
Confidence 4 3345555554 78999999999 5799998 89999999999999999999975321 2234456899999
Q ss_pred eCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
.|++|+|+ |.++..+|+++.++++.+.+.... . .. +++. .+ ..+|..+ .+.+-+
T Consensus 187 ~S~sK~l~---G~~~~~~G~~~~~~~l~~~l~~~~-----------~--~~-g~~~----~~---~~a~~~l--~~~~~l 240 (376)
T PRK06460 187 HSASKFLA---GHNDVIAGLAAGYGKLLNVIDQMR-----------R--TL-GTSL----DP---HAAYLTL--RGIKTL 240 (376)
T ss_pred eecceecc---CCCCceEEEEecCHHHHHHHHHHH-----------H--hc-CCCC----CH---HHHHHHH--hchhhH
Confidence 99999984 112345888888776654432100 0 01 1111 11 1233333 345667
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 001989 869 TEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g 889 (985)
..+.++..+++.++++.|++.
T Consensus 241 ~~r~~~~~~n~~~l~~~L~~~ 261 (376)
T PRK06460 241 KIRMDVINRNAEQIAEFLEGH 261 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 777888999999999999863
No 482
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=99.50 E-value=3.3e-12 Score=149.05 Aligned_cols=355 Identities=15% Similarity=0.155 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHhccccCcccccccccccccCCCcccccccc---ccccc---cccCCCCchhhhhhHHHHHHHHHHHHHH
Q 001989 570 EHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPV---TWPSF---ANIHPFAPADQAQGYQEMFNNLGEWLCT 643 (985)
Q Consensus 570 e~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~---~~~~f---~~~~p~~p~e~~~G~~~~~~e~~~~la~ 643 (985)
-.++.+.+..+..+.. ....+.|+.+.+.+.+....... ..... ...+.|.| .+|..++.+.+.+++.+
T Consensus 17 ~~~~~~~~~~~~~~~~--~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~G~~~LR~aia~~~~~ 91 (409)
T PRK07590 17 FPEIARRVNAFREANP--EAKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYGP---EQGYDFLREKIAENDYQ 91 (409)
T ss_pred HHHHHHHHHHHhhhcC--CCceEEecCcCCCCCCCHHHHHHHHHHHhcccccCCccCCCC---CCCCHHHHHHHHHHHHH
Confidence 3567777777765532 12356788777665543322211 00110 01122322 35765555555555444
Q ss_pred HhC--CCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE-----------EEEEcC
Q 001989 644 ITG--FDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK-----------IVSVGT 709 (985)
Q Consensus 644 l~G--~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~-----------vv~v~~ 709 (985)
..| .+..++..++|++ +.. .+ .... .++|+|+++++.+..+...++..|.+ ++.+|+
T Consensus 92 ~~g~~~~~~~I~it~Ga~~al~-~l---~~~~-----~~gd~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~ 162 (409)
T PRK07590 92 ARGCDISADEIFISDGAKCDTG-NI---LDIF-----GPDNTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPC 162 (409)
T ss_pred hcCCcCChhhEEECCCHHHHHH-HH---HHhc-----CCCCEEEEeCCCCcchHHHHHHcCCcccccccccccceeEeec
Confidence 444 4445666666655 332 22 1221 37789999998887777778888986 888888
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC-CCCC-Ccc-
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG-LTSP-GYI- 782 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~-l~~p-g~~- 782 (985)
+.++...++ +. .+++++|++++| |++|.+. ..+++|.++|+++|++++.|.++..-. .+ ...+ ..+
T Consensus 163 ~~~~~~~~d-----~~--~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~ 235 (409)
T PRK07590 163 TAENNFVPE-----LP--EEKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIE 235 (409)
T ss_pred ccccCCccc-----Cc--ccCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCC
Confidence 644222222 11 157889999999 5799986 257788889999999999999874211 11 0001 111
Q ss_pred C---CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCC-CCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 001989 783 G---ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP-SHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 783 g---~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp-~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
+ .-|++.|+.|+|++| |.++|++++++++.+.+. +..... ..............++ ...+. ++..
T Consensus 236 ~~~~~vi~~~SfSK~~~~p----GlRiG~~i~~~~li~~~~~~~~~~~-~~~~~~~~~~~~~~~s--~~~q~----a~~~ 304 (409)
T PRK07590 236 GARECAIEFRSFSKTAGFT----GTRCAYTVVPKELKGKTSDGEGVSL-NSLWNRRQSTKFNGVS--YIVQR----AAEA 304 (409)
T ss_pred CcccceEEEecCccccCCc----CceeEEEEcCHHHhhhccccchhhh-HHHHHHHHhhcccCcC--HHHHH----HHHH
Confidence 1 125577888988654 789999999877664221 000000 0000000000001111 11111 1112
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH-CCCccCC
Q 001989 859 YIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD-YGFHGPT 936 (985)
Q Consensus 859 ~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~-~Gi~~~~ 936 (985)
++..-+.+-+++..+...++.+++.+.|++ ++.+ . .+.+..+ +.++++ .+.+..++++.|.+ +|+.+..
T Consensus 305 ~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~-~~~g~~f--~wi~~~-----~~~~~~~~~~~l~~~~gv~v~p 375 (409)
T PRK07590 305 VYSPEGKAQIKELIDYYMENAKIIREGLESAGFEV-Y-GGVNAPY--IWVKTP-----DGMSSWDFFDKLLQEANVVGTP 375 (409)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCce-e-cCCcceE--EEEECC-----CCCCHHHHHHHHHHHCCEEEeC
Confidence 222112333444555567777888888876 3333 2 2212222 346664 13567788888764 6987643
Q ss_pred -CCCC--CCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 937 -MSWP--VPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 937 -~~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
..|. ..+++||+. ..++++++. .++.|.+
T Consensus 376 g~~f~~~~~~~iRi~~--~~~~~~l~~--~l~rl~~ 407 (409)
T PRK07590 376 GSGFGPSGEGYFRLSA--FGSRENVLE--AMERIKK 407 (409)
T ss_pred hhHhCCCCCCEEEEEc--cCCHHHHHH--HHHHHHh
Confidence 2232 246899995 357888888 5555544
No 483
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=99.50 E-value=2.4e-12 Score=147.90 Aligned_cols=281 Identities=14% Similarity=0.113 Sum_probs=167.8
Q ss_pred hhHHHHHHHHHHHHHHHhCCC---ccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD---SFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~---~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+.+.+++.+..|.+ ...+..++|++ +.. . ++..+. ..++++|+++++.|..+...++..|++
T Consensus 62 ~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~-~--~~~~l~----~~~gd~Vl~~~p~y~~~~~~~~~~g~~ 134 (364)
T PRK07865 62 AGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVA-W--LPTLLG----LGPGDVVVIPELAYPTYEVGARLAGAT 134 (364)
T ss_pred cCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHH-H--HHHHHc----CCCCCEEEECCCCcccHHHHHHhcCCE
Confidence 576666667777777666643 44566666655 432 2 112110 136789999998888887778889999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC--CC
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG--LT 777 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~--l~ 777 (985)
++.++ +++++.+ +++++|++++| |++|.+. .++++|.++|+++|+++++|+++..-. .+ +.
T Consensus 135 ~~~~~-------~~~~l~~------~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~ 201 (364)
T PRK07865 135 VVRAD-------SLTELGP------QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVS 201 (364)
T ss_pred EEecC-------ChhhCCc------ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCc
Confidence 87765 2333321 57889999988 5799875 247888999999999999999874211 00 00
Q ss_pred --CC----CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 778 --SP----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 778 --~p----g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
.+ +...-.+++.|++|.|+.| |.++|++++++++...+.... . ....+.+...+.
T Consensus 202 ~~~~~~~~~~~~~~i~~~S~SK~~~~~----GlRiG~i~~~~~~~~~~~~~~------------~--~~~~~~~~~~q~- 262 (364)
T PRK07865 202 ILDPRVCGGDHTGLLAVHSLSKQSNLA----GYRAGFVAGDPALVAELLEVR------------K--HAGMMVPAPVQA- 262 (364)
T ss_pred cccccccCCccceEEEEeechhccCCC----ceeeEEEecCHHHHHHHHHHH------------H--hcCCCcCHHHHH-
Confidence 01 0111237788999998654 678999998877655432110 0 001111111111
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY 930 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~ 930 (985)
++..++.. .+-+++..+...++.+++.+.|++ ++.+. .+.+.++ +.+.+. .+..++.+.|.++
T Consensus 263 ---~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~--~~~~~~-------~~~~~~~~~l~~~ 326 (364)
T PRK07865 263 ---AMVAALGD--DAHVREQRERYARRRAVLRPALEAAGFRVD--HSEAGLY--LWATRG-------EDCWDTVAWLAER 326 (364)
T ss_pred ---HHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHcCCccc--CCCccEE--EEEeCC-------CCHHHHHHHHHHC
Confidence 11122221 233444445566777888888876 44332 2223222 233332 3467888999999
Q ss_pred CCccCCC-CC-C-CCCEEEEeccCCCCHHHHHHHHccCCh
Q 001989 931 GFHGPTM-SW-P-VPGTLMIEPTESESKSWTGIVMLSSPS 967 (985)
Q Consensus 931 Gi~~~~~-~~-p-~~~~lris~t~~~t~eeId~~~~~~~l 967 (985)
||.+... .| + .++++||+++. +++++++ .++.|
T Consensus 327 gv~v~pg~~f~~~~~~~iRi~~~~--~~~~~~~--~~~~l 362 (364)
T PRK07865 327 GILVAPGDFYGPAGAQHVRVALTA--TDERIAA--AVERL 362 (364)
T ss_pred CEEEeCccccCcCCCCEEEEEecC--CHHHHHH--HHHHh
Confidence 9986432 22 1 35799999874 5888888 44443
No 484
>PRK05957 aspartate aminotransferase; Provisional
Probab=99.50 E-value=1.3e-11 Score=143.04 Aligned_cols=307 Identities=10% Similarity=0.069 Sum_probs=187.9
Q ss_pred ecCCCCCCCCCcHHHHHHHHh---CCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCC---CcceeeccchHHHHHH
Q 001989 170 FIGMGYYNTHVPPVILRNIME---NPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLP---MSNASLLDEGTAAAEA 243 (985)
Q Consensus 170 ~lG~g~y~~~~p~~v~~~i~~---~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~---~~~~sl~~~~ta~~ea 243 (985)
.+|.|..+...|+.+.+++.. +.. ...|. ..+|..+....+++.+++.+|.+ ..++.+++|++.++..
T Consensus 31 ~l~~g~~~~~~~~~~~~a~~~~~~~~~----~~~Y~--~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~ 104 (389)
T PRK05957 31 SLGQGVVSYPPPPEAIEALNNFLANPE----NHKYQ--AVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMN 104 (389)
T ss_pred EccCCCCCCCCCHHHHHHHHHHHhCCC----CCCCC--CCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHH
Confidence 567777665566666544332 111 11232 24677777788888999999974 4578888998877766
Q ss_pred HHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeec
Q 001989 244 MAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVL 313 (985)
Q Consensus 244 ~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~ 313 (985)
+..++ . ++||+|++++-.|+.+...++ ..|++++.++. +++++ +++++++|++.+| |.+|.+.
T Consensus 105 ~~~~~-~--~~gd~Vlv~~P~y~~~~~~~~----~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~klv~~~~p~NPtG~~~ 177 (389)
T PRK05957 105 AILAI-T--DPGDEIILNTPYYFNHEMAIT----MAGCQPILVPTDDNYQLQPEAIEQAITPKTRAIVTISPNNPTGVVY 177 (389)
T ss_pred HHHHh-c--CCCCEEEEeCCCCcCHHHHHH----hcCCEEEEeecCCCCCcCHHHHHHhcCcCceEEEEeCCCCCCCcCc
Confidence 55554 2 388999999988877665543 46888877754 34555 7778999999888 7899987
Q ss_pred c---HHHHHHHHHhCCcEEEEEecCcc-c--cC-C-CC----CCcccceEEEecC-ccccccCCCCCCc--EEEEEEchh
Q 001989 314 D---YGDFIKNAHANGVKVVMATDLLA-L--TI-L-KP----PGELGADIVVGSA-QRFGVPMGYGGPH--AAFLATSQE 378 (985)
Q Consensus 314 d---i~~I~~~a~~~galliV~a~~~~-l--g~-l-~~----~~~~GaDi~v~s~-k~lg~P~~~GGP~--~G~l~~~~~ 378 (985)
+ +++|+++||++|+++++|. ... + .- . .+ +...+--|++.|. |.|+ .|| +|++++.++
T Consensus 178 ~~~~~~~i~~~a~~~~~~li~De-~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g------~~GlRiG~~~~~~~ 250 (389)
T PRK05957 178 PEALLRAVNQICAEHGIYHISDE-AYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYG------FASWRIGYMVIPIH 250 (389)
T ss_pred CHHHHHHHHHHHHHcCcEEEEec-cchhccCCCCCccChhhCCCccCcEEEEecchhhcc------CccceeEEEecCHH
Confidence 6 9999999999999999943 211 1 10 0 01 1122234667776 7664 355 799998888
Q ss_pred hHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHH
Q 001989 379 YKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFA 458 (985)
Q Consensus 379 ~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~ 458 (985)
+++++... +.+...|++...-..+... +. .+..-+++..++..++.+++.
T Consensus 251 ~~~~~~~~----------------------------~~~~~~~~~~~~q~~~~~~-l~-~~~~~~~~~~~~~~~~r~~l~ 300 (389)
T PRK05957 251 LLEAIKKI----------------------------QDTILICPPVVSQYAALGA-LQ-VGKSYCQQHLPEIAQVRQILL 300 (389)
T ss_pred HHHHHHHH----------------------------HhhcccCCCcHHHHHHHHH-Hh-CChHHHHHHHHHHHHHHHHHH
Confidence 77665210 0111122211111111111 11 122235666677788888899
Q ss_pred HHHhcCCCe-EEcCCCCcce-EEEecC-C--HHHHHHHHH-HcCceeeee-----c-CCeEEEEeccCCCHHHHHHHHHH
Q 001989 459 LGLKKLGTV-EVQGLPFFDT-VKVKCA-D--AHAIASAAY-KIEMNLRVV-----D-SNTVTASFDETTTLEDVDKLFIV 526 (985)
Q Consensus 459 ~~L~~~g~~-~~~~~~~~~~-~~~~~~-~--~~~v~~~L~-~~GI~~~~~-----~-~~~lris~t~~~t~edId~li~a 526 (985)
+.|++++++ .+. .+...- +.++.+ + ..++.++|. ++||.+... . ++.+|+++... +++++++.++.
T Consensus 301 ~~L~~~~~~~~~~-~~~gg~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~~-~~~~l~~~~~~ 378 (389)
T PRK05957 301 KSLGQLQDRCTLH-PANGAFYCFLKVNTDLNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRIAYGAL-QKATAKEGIER 378 (389)
T ss_pred HHHHhcCCCcccc-CCCeeEEEEEeCCCCCChHHHHHHHHHHCCEEEccchhhCCCCCCEEEEEEecC-CHHHHHHHHHH
Confidence 999887433 322 222111 223433 2 778999986 579987542 1 35899999654 46666665555
Q ss_pred Hh
Q 001989 527 FA 528 (985)
Q Consensus 527 L~ 528 (985)
|.
T Consensus 379 l~ 380 (389)
T PRK05957 379 LV 380 (389)
T ss_pred HH
Confidence 54
No 485
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=99.50 E-value=5.6e-12 Score=148.02 Aligned_cols=307 Identities=13% Similarity=0.134 Sum_probs=181.4
Q ss_pred hhhHHHHHHHHHHHHHHHhC----CCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHH-HC
Q 001989 627 AQGYQEMFNNLGEWLCTITG----FDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA-MC 700 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G----~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~-~~ 700 (985)
..|..++.+.+.+.+.+.+| +++..+..++|++ +.+.... .+ ..++|.|+++.+.++.+..... ..
T Consensus 94 ~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~---~l-----~~pGD~Vlv~~P~Y~~f~~~~~~~~ 165 (447)
T PLN02607 94 YHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTF---IL-----ADPGDALLVPTPYYPGFDRDLRWRT 165 (447)
T ss_pred CcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHH---Hh-----CCCCCEEEEcCCCCcchHHHHHhcC
Confidence 46777777777777777665 3444555555544 4433222 22 1478999999998887766555 57
Q ss_pred CcEEEEEcCCCC--CCCCHHHHHHHHHhc---CCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEcccccc
Q 001989 701 GMKIVSVGTDAK--GNINIEELRKAAEAN---RDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNA 772 (985)
Q Consensus 701 G~~vv~v~~d~~--g~iD~e~L~~~i~~~---~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~ 772 (985)
|++++.|+++.+ +.+|++++++++++. ..++++|++++| |++|.+.+ .+++|.++|+++|+.+|+|.++...
T Consensus 166 g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~ 245 (447)
T PLN02607 166 GVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGS 245 (447)
T ss_pred CcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEecccccc
Confidence 999999988643 568999999998632 247899999999 57998862 4889999999999999999987422
Q ss_pred c-c--CCCCC----CccC----Cc--EEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCC
Q 001989 773 Q-V--GLTSP----GYIG----AD--VCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQP 838 (985)
Q Consensus 773 ~-~--~l~~p----g~~g----~D--i~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~ 838 (985)
. . .+... ...+ .+ +++.|+.|.|+.| |-++|++++. +.+...+... ..
T Consensus 246 ~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~----GlRvG~ivs~n~~l~~~~~~~--------------~~ 307 (447)
T PLN02607 246 VFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLP----GFRVGTIYSYNDKVVTTARRM--------------SS 307 (447)
T ss_pred ccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCC----cceEEEEEEcCHHHHHHHHHH--------------hh
Confidence 1 1 11100 0111 12 4567888888654 6889999973 4443322100 00
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHhcHH-----HHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCc
Q 001989 839 LGTIAAAPWGSALILPISYTYIAMMGSK-----GLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGL 912 (985)
Q Consensus 839 ~~~i~s~~~g~~~~~~~a~a~l~~lg~e-----Gl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~ 912 (985)
...+++ ..+ .+++ ..+.+. -+.+..++..++.+.+.+.|++ ++.. ..+.+..+ +.++++..
T Consensus 308 ~~~~s~--~~q-----~~~~--~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~gi~~--~~~~ag~f--vw~~L~~~ 374 (447)
T PLN02607 308 FTLVSS--QTQ-----HLLA--SMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRAGIEC--LKGNAGLF--CWMNLSPL 374 (447)
T ss_pred cCCCCH--HHH-----HHHH--HHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--ccCCeeEE--EEEEchHh
Confidence 111211 011 1111 222221 1233344556667778888876 4332 22222233 34555421
Q ss_pred cc-cCCCCHHHHHHHHHH-CCCccCC-CCC--CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 913 KN-TAGIEPEDVAKRLMD-YGFHGPT-MSW--PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 913 ~~-~~g~~~~~v~~~L~~-~Gi~~~~-~~~--p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.. .......++.++|.+ .|+.+.. ..| ..++++||+++. .++++++. .++.|.+.+++-|
T Consensus 375 ~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~-~~~~~l~~--gl~Ri~~~l~~~~ 439 (447)
T PLN02607 375 LETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFAN-MSEDTLEV--ALKRIHRFMDRRK 439 (447)
T ss_pred hcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEecc-CCHHHHHH--HHHHHHHHHHHHH
Confidence 00 000123467777765 6988643 222 236999999975 34788888 6677777776543
No 486
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=99.50 E-value=2.4e-12 Score=146.19 Aligned_cols=271 Identities=14% Similarity=0.081 Sum_probs=166.8
Q ss_pred HHHHHHHHHHhCCCc-cceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 635 NNLGEWLCTITGFDS-FSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 635 ~e~~~~la~l~G~~~-~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
.++++++++.+|.+. .++..++|++ +. ..+ .+ .. .+++ |+++.+.++.+...++..|++++.++.+.
T Consensus 56 ~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i-~~l--~~-~~-----~~g~-v~v~~P~y~~y~~~~~~~g~~~~~v~~~~- 124 (339)
T PRK06959 56 DGLAACAARYYGAPDAAHVLPVAGSQAAI-RAL--PA-LL-----PRGR-VGIAPLAYSEYAPAFARHGHRVVPLDEAA- 124 (339)
T ss_pred HHHHHHHHHHhCCCCcccEEECcCHHHHH-HHH--HH-hc-----CCCe-EEEcCCCcHHHHHHHHHCCCEEEeecccc-
Confidence 378899999999974 5666656655 33 222 22 11 2454 88887766666667889999999888642
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHH---HHHHcCCEEEEEccccccccCCCCCCcc-CCc--
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICK---IIHDNGGQVYMDGANMNAQVGLTSPGYI-GAD-- 785 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~---la~~~galliVD~a~~~~~~~l~~pg~~-g~D-- 785 (985)
+. +. +.++++++++|| ++|.+- +.+++.+ .|.+++.++++|+++..-. .......+ ..+
T Consensus 125 -----~~----~~---~~~~~v~l~nPnNPTG~~~-s~~~l~~l~~~~~~~~~~vI~DEay~~~~-~~~s~~~~~~~~~v 190 (339)
T PRK06959 125 -----DT----LP---AALTHLIVVNPNNPTAERL-PAARLLRWHAQLAARGGTLIVDEAFADTL-PAASLAAHTDRPGL 190 (339)
T ss_pred -----hh----cc---ccCCEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEECCCccCC-CcccchhccCCCCE
Confidence 22 22 345678999995 799986 4555554 4567899999999874211 10010111 112
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
+++.|+.|.|++| |.++|++++++++.+.+.... ...++++ ....++.++|.. .
T Consensus 191 i~l~SfSK~~gl~----GlRiGy~v~~~~li~~l~~~~--------------~~~~vs~------~~q~a~~~~L~~--~ 244 (339)
T PRK06959 191 VVLRSVGKFFGLA----GVRAGFVLAAPALLAALRDAL--------------GAWTVSG------PARHAVRAAFAD--A 244 (339)
T ss_pred EEEecChhhcCCc----chheEEEecCHHHHHHHHHhc--------------CCCCCcH------HHHHHHHHHhCc--H
Confidence 5667778877554 789999999887765542110 0011211 111222233321 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCE
Q 001989 866 KGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGT 944 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~ 944 (985)
+-.++..+...++++++.+.|++ ++.+. . ...+ +.++++ +..++.+.|.++||.+..+. ..++
T Consensus 245 ~~~~~~~~~~~~~r~~l~~~L~~~g~~~~-~---~~~f--~~~~~~--------~~~~l~~~l~~~GI~vr~~~--~~~~ 308 (339)
T PRK06959 245 AWQAAMRERLAADGARLAALLRAHGFAVH-A---TPLF--SWTDDP--------RAAALHAALARRGIWTRYFA--PPPS 308 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCcc-C---cceE--EEEeCC--------CHHHHHHHHHhCCeEEEECC--CCCe
Confidence 22334445567778889999987 44432 1 1211 223432 46789999999999986443 2479
Q ss_pred EEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 945 LMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 945 lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+||+++ .+.+|+++ ++++|+++++.+.+
T Consensus 309 lRisi~--~~~~e~~~--l~~al~~~~~~~~~ 336 (339)
T PRK06959 309 VRFGLP--ADEAEWQR--LEDALAECVPTLAA 336 (339)
T ss_pred EEEECC--CCHHHHHH--HHHHHHHHHHHHhh
Confidence 999963 46789999 88899988887765
No 487
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=99.49 E-value=1.6e-12 Score=133.80 Aligned_cols=277 Identities=20% Similarity=0.221 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-- 288 (985)
..|..|-..+++++|||. +-.+.|+-.+=.|+.-++. ++||-|+++.++|-+..-+. ++.|+++..+|-
T Consensus 61 PpI~~F~~dlaeFlg~D~--~R~t~GARe~KfavMhal~---~~gd~vV~D~~aHYttyvAA----Eragl~v~eVp~tg 131 (382)
T COG1103 61 PPIKDFLEDLAEFLGMDE--VRVTAGAREAKFAVMHALC---KEGDWVVVDSLAHYTTYVAA----ERAGLNVAEVPNTG 131 (382)
T ss_pred CcHHHHHHHHHHHhCCce--eeecccchhhHHHHHHHhc---cCCCEEEEcCcchHHHHHHH----HhcCCeEEecCCCC
Confidence 346677788999999998 5667777766666554553 48999999999997665443 456889988863
Q ss_pred --------h----hhhc-c---CCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEE-EecCccccCC-CCCCcccc
Q 001989 289 --------K----DIDY-K---SGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVM-ATDLLALTIL-KPPGELGA 349 (985)
Q Consensus 289 --------~----~l~~-l---~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV-~a~~~~lg~l-~~~~~~Ga 349 (985)
+ -+++ . .+..++.++|++ ..+|.+.|.+.++++||++|+++++ ++. +.|-+ .+..+.|+
T Consensus 132 ~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AY--t~Grmpvs~ke~g~ 209 (382)
T COG1103 132 YPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAY--TVGRMPVSGKEIGA 209 (382)
T ss_pred CCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecce--eeccccccccccCC
Confidence 1 1222 1 234677789999 5699999999999999999999999 443 45533 34578999
Q ss_pred eEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccch--hHH
Q 001989 350 DIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTA--QAL 426 (985)
Q Consensus 350 Di~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~--~~l 426 (985)
|++|+|+ |++.. .|| +|+++.++++.+..- |..| +. |. ..|- -.--||. .++
T Consensus 210 DFiVgSGHKsmAA----s~P-iGvl~~~eE~ae~V~-r~Sg-------~~-~~----------~KEv-ellGCT~rGapi 264 (382)
T COG1103 210 DFIVGSGHKSMAA----SAP-IGVLAMSEEWAEIVL-RRSG-------RA-FP----------KKEV-ELLGCTVRGAPI 264 (382)
T ss_pred CEEEecCccchhc----cCC-eeEEeehhHHHHHHH-hhcc-------cc-cc----------ccee-eeecccccCchH
Confidence 9999999 87753 222 689999998876531 1111 10 10 0000 0112443 334
Q ss_pred HHHHHHH-HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-CCcce-EEEecCCHHHHHHHHHHcCceeee--
Q 001989 427 LANMAAM-YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDT-VKVKCADAHAIASAAYKIEMNLRV-- 501 (985)
Q Consensus 427 ~a~~aa~-~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~-~~~~~~~~~~v~~~L~~~GI~~~~-- 501 (985)
.-++|+. +.. +- -..++...++++++.++|+++||++.++. |.-+. +.|..|.-.+|++.-..+|+++..
T Consensus 265 vTlmASfP~V~----eR-VkrWdeEv~kaR~fv~elEkigg~~qlG~rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~EL 339 (382)
T COG1103 265 VTLMASFPHVV----ER-VKRWDEEVEKARWFVAELEKIGGVKQLGERPKNHDLMKFETPVFHEIAKKHKRKGYFLYEEL 339 (382)
T ss_pred HHHHhcCHHHH----HH-HHHHHHHHHHHHHHHHHHHHhhhHHHhCCCCcccceeeecCchHHHHHHhCcCCceeeHHHH
Confidence 4555554 111 11 13455567899999999999987887753 43333 445555455555554444554311
Q ss_pred -------ecC---CeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 -------VDS---NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 -------~~~---~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+ ..+-+| ++.-+.|+++..++++++
T Consensus 340 K~RgI~GI~~G~Tk~~K~s-vyGl~~Eqve~V~~afke 376 (382)
T COG1103 340 KKRGIHGIQPGQTKYFKLS-VYGLSWEQVEYVVDAFKE 376 (382)
T ss_pred HhcCccccccCceeEEEEE-eecCCHHHHHHHHHHHHH
Confidence 011 234444 345689999999999874
No 488
>PRK09275 aspartate aminotransferase; Provisional
Probab=99.49 E-value=1.8e-12 Score=152.83 Aligned_cols=328 Identities=13% Similarity=0.070 Sum_probs=177.3
Q ss_pred hhHHHHHHHHHHHH-HHHhCC--Cc---cceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHC
Q 001989 628 QGYQEMFNNLGEWL-CTITGF--DS---FSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMC 700 (985)
Q Consensus 628 ~G~~~~~~e~~~~l-a~l~G~--~~---~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~ 700 (985)
.|..++.+++.+.. .+..+. +. .+++. +++++|...++.++..- .- .++||+|+++++.+..+...+++.
T Consensus 134 ~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~--~l-l~pGD~Vlv~~P~y~~Y~~~~~l~ 210 (527)
T PRK09275 134 DRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKEN--GL-LKAGDKIALMTPIFTPYLEIPELP 210 (527)
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhh--hc-CCCCCEEEEeCCChHHHHHHHHHc
Confidence 57666666665533 332222 11 14444 45555654444432110 00 147899999998776666666666
Q ss_pred C--cEEEEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHH--cCCEEEEEccccc
Q 001989 701 G--MKIVSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHD--NGGQVYMDGANMN 771 (985)
Q Consensus 701 G--~~vv~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~--~galliVD~a~~~ 771 (985)
| ++++.++.++ ++.+|+++|+++++ +++++|++++| |++|.+. ..+++|+++|++ +|++++.|.++..
T Consensus 211 g~~~~~v~v~~~~~~~f~~d~~~l~~~~~---~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~ 287 (527)
T PRK09275 211 RYDLEVVHINADEENEWQYPDSELEKLRD---PSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGT 287 (527)
T ss_pred CCCeEEEEeecCcccCCCCCHHHHHhhcC---CCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChh
Confidence 5 5566665543 37899999999887 88999999999 5799986 247888888954 5999999998732
Q ss_pred cccCCCCCCc-c-CCcEEEeCCcccccccCCCCCCceEEEEEccc-----ccCcCCC--------CccccCCCC--C---
Q 001989 772 AQVGLTSPGY-I-GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-----LAPFLPS--------HPVVSTGGI--P--- 831 (985)
Q Consensus 772 ~~~~l~~pg~-~-g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-----l~~~lp~--------~~~g~~~~~--~--- 831 (985)
-......... + .--+++.|+.|+|++| |+++|++++.++ ++..+|. ++-..+.+. .
T Consensus 288 f~~~~~s~~~~~~~~~I~v~SfSK~f~mt----G~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fi 363 (527)
T PRK09275 288 FVDDFRSLFAVLPYNTILVYSFSKYFGAT----GWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFI 363 (527)
T ss_pred hcccccCHHHhCCCCEEEEeehhhhccCc----HhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhH
Confidence 1111111111 1 1236778889998764 899999998875 4433321 000000000 0
Q ss_pred CC-----C--CCCCCCCCCCcchhhhHHHHHHH-HHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceee
Q 001989 832 AP-----E--KSQPLGTIAAAPWGSALILPISY-TYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAH 903 (985)
Q Consensus 832 ~~-----~--~~~~~~~i~s~~~g~~~~~~~a~-a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~ 903 (985)
.+ + ....+.+.++ ..|...+..+. +.+. -+.+-..+..+...++.+.+.+.|. ..+....+.+.++
T Consensus 364 drlvad~~~v~~~~t~~~s~--p~Q~a~al~~~~all~-~~~~~~~~~~~~~~~Rr~~l~~~Lg--~~~~~~~p~g~fY- 437 (527)
T PRK09275 364 DRLVADSRQVALNHTAGLST--PQQVQMALFSLFALLD-EEDAYKKAMKDIIRRRYKALYEGLG--LPEPEDPNNAAYY- 437 (527)
T ss_pred HHHHHHHHHHHHhhccCCCC--HHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHcC--CCCcCCCCCeeEE-
Confidence 00 0 0011122221 11221111111 1122 1223334444556666677777773 3332112233333
Q ss_pred EEEEEecCccc-----------cCCCCHHHHHHHHHHC-CCcc-CCCCCC-CCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 904 EFIVDLRGLKN-----------TAGIEPEDVAKRLMDY-GFHG-PTMSWP-VPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 904 ~~iv~~~~~~~-----------~~g~~~~~v~~~L~~~-Gi~~-~~~~~p-~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
+.++++.+.. ..+.+..+++.+|.++ |+.+ ++..|. ..+++|||+.. .+++++.. ..+.|.+
T Consensus 438 -~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e~gV~v~PG~~Fg~~~~~vRis~a~-~~~~~~~~--~~~rl~~ 513 (527)
T PRK09275 438 -TLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEETGVVLLPGGGFGGPEWSVRVSLAN-LNEEDYAK--IGKAIRK 513 (527)
T ss_pred -EEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhcCCEEEeCchhhCCCCCeEEEEEec-CCHHHHHH--HHHHHHH
Confidence 2344432100 0023577888888875 7764 333342 25789999843 35677777 5566666
Q ss_pred HHHhhc
Q 001989 970 KLHRLK 975 (985)
Q Consensus 970 ~~~~~~ 975 (985)
++.+.+
T Consensus 514 ~l~~y~ 519 (527)
T PRK09275 514 LLDEYY 519 (527)
T ss_pred HHHHHH
Confidence 665543
No 489
>PRK07908 hypothetical protein; Provisional
Probab=99.49 E-value=9.4e-12 Score=142.08 Aligned_cols=298 Identities=14% Similarity=0.118 Sum_probs=183.7
Q ss_pred CCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhh
Q 001989 172 GMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ 251 (985)
Q Consensus 172 G~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~ 251 (985)
..+..+...|+.+.+.+.....-+..|.+. +| ..++++.+|+.+|.++.++.++.|++.++..+.. +.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-----~g----~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~---l~ 95 (349)
T PRK07908 28 AVNVRHDTPPEWLRERLAARLGDLAAYPST-----ED----ERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR---LR 95 (349)
T ss_pred cCCCCCCCCCHHHHHHHHHHhhHhhcCCCc-----cc----hHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh---cC
Confidence 445445557776655554332223344332 12 3457789999999999999999999976654333 32
Q ss_pred cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchh---h--hccCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhC
Q 001989 252 KGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKD---I--DYKSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHAN 325 (985)
Q Consensus 252 ~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~---l--~~l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~ 325 (985)
+ +++++. ||++...+.. ++..|++++.++.++ + +.+.++++++++.+| |.+|.+.+.++|.++|++
T Consensus 96 --~-~~viv~---~P~y~~~~~~-~~~~G~~i~~v~~~~~~~~d~~~l~~~~~~i~l~np~NPTG~~~~~~~l~~l~~~- 167 (349)
T PRK07908 96 --P-RRAAVV---HPSFTEPEAA-LRAAGIPVHRVVLDPPFRLDPAAVPDDADLVVIGNPTNPTSVLHPAEQLLALRRP- 167 (349)
T ss_pred --C-CeEEEe---CCCChHHHHH-HHHcCCEEEeeccCcccCcChhHhccCCCEEEEcCCCCCCCCCcCHHHHHHHHhc-
Confidence 5 456665 4555544432 345799998887642 1 125567889999888 789999999999999975
Q ss_pred CcEEEEEecCcc---ccCCCCCC--cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcc
Q 001989 326 GVKVVMATDLLA---LTILKPPG--ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPA 399 (985)
Q Consensus 326 galliV~a~~~~---lg~l~~~~--~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~ 399 (985)
+.++++| +..+ .+-..+.. +.+--++++|. |.|+.| |.-+||+++++++++.+.... .
T Consensus 168 ~~~iIvD-e~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~~~l~----GlRiG~~~~~~~~~~~~~~~~----------~- 231 (349)
T PRK07908 168 GRILVVD-EAFADAVPGEPESLAGDDLPGVLVLRSLTKTWSLA----GLRVGYALGAPDVLARLTRGR----------A- 231 (349)
T ss_pred CCEEEEE-CcchhhccCCccccccccCCCEEEEeecccccCCc----cceeeeeecCHHHHHHHHhcC----------C-
Confidence 7888884 3222 11111111 12223556675 877532 345699999888776652100 0
Q ss_pred eeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEE
Q 001989 400 LRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVK 479 (985)
Q Consensus 400 ~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~ 479 (985)
..++++. ...++ ..++.-.+.+-++++.++..++.+++.+.|+++| +++..++...-+.
T Consensus 232 -----------------~~~~~~~-~~~a~--~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~~p~~g~~~~ 290 (349)
T PRK07908 232 -----------------HWPVGTL-QLEAI--AACCAPRAVAEAAADAARLAADRAEMVAGLRAVG-ARVVDPAAAPFVL 290 (349)
T ss_pred -----------------CCCccHH-HHHHH--HHHhcccchHHHHHHHHHHHHHHHHHHHHHHhCC-cEeccCCCceEEE
Confidence 0112111 11111 1111111122356677888888999999999886 8776432222344
Q ss_pred EecCCHHHHHHHHHHcCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 480 VKCADAHAIASAAYKIEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 480 ~~~~~~~~v~~~L~~~GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++.++..++.+.|.++||.+... .++.+|+|++ +.+|+++|+++|+.
T Consensus 291 ~~~~~~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~~---~~~~~~~l~~al~~ 343 (349)
T PRK07908 291 VRVPDAELLRKRLRERGIAVRRGDTFPGLDPDYLRLAVR---PRAEVPVLVQALAE 343 (349)
T ss_pred EECCcHHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEeC---CCccHHHHHHHHHH
Confidence 55555678888999999987542 2478999994 78899999999974
No 490
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=99.48 E-value=4.4e-12 Score=143.61 Aligned_cols=269 Identities=15% Similarity=0.098 Sum_probs=164.9
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++.+++.+|.+ .+..++|++ +.. ++++. .++++|+++++.++.+...++..|++++.+|.+
T Consensus 52 ~~Lr~~ia~~~~~~--~I~it~Gs~~al~---~~~~~-------~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v~~~--- 116 (330)
T PRK05664 52 DGLEAAARAYYGAP--QLLPVAGSQAAIQ---ALPRL-------RAPGRVGVLSPCYAEHAHAWRRAGHQVRELDEA--- 116 (330)
T ss_pred HHHHHHHHHHhCCC--CEEECcCHHHHHH---HHHHc-------cCCCEEEEcCCChHHHHHHHHHcCCeEEEechh---
Confidence 36788899999875 344444554 432 22221 367899999987777777788999999888753
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc-C-Cc-EE
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI-G-AD-VC 787 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~-g-~D-i~ 787 (985)
+++++++ +++++++++|| ++|.+- .++++|.++|+++|+++++|.++.... .......+ . .. ++
T Consensus 117 -----~~~~~~~----~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~-~~~s~~~~~~~~~vi~ 186 (330)
T PRK05664 117 -----EVEAALD----SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNT-PQHSLAACAHRPGLIV 186 (330)
T ss_pred -----hHhhhhc----CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCC-CcccccccccCCCEEE
Confidence 4555553 56678889994 799986 246677777889999999999874211 10011111 1 12 66
Q ss_pred EeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
+.|+.|+|++| |.++|++++++++.+.+.... ...++++ ....++.++|.. .+-
T Consensus 187 ~~SfSK~~gl~----GlRiG~~v~~~~l~~~~~~~~--------------~~~~~~~------~~~~~~~~~L~~--~~~ 240 (330)
T PRK05664 187 LRSFGKFFGLA----GARLGFVLAEPALLRALAELL--------------GPWTVSG------PTRWLAQAALAD--TPW 240 (330)
T ss_pred EeeccccccCC----CcceEEEEeCHHHHHHHHHhc--------------CCCCCCH------HHHHHHHHHHhC--hHH
Confidence 77888888654 789999999877665442110 0011111 111112223321 122
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEE
Q 001989 868 LTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMI 947 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lri 947 (985)
.++..++..++++++.+.|++. ++...+ +..+ -+.+..+ +..++.+.|.++||.+... ..++++||
T Consensus 241 ~~~~~~~~~~~r~~l~~~L~~~-~~~~~~--~~~~-f~~~~~~--------~~~~~~~~l~~~gi~v~~f--~~~~~iRi 306 (330)
T PRK05664 241 QRRQRERLLAASQRLAALLRRH-GLTPAG--GCAL-FQWVRTE--------DAAALHEFLARRGILTRLF--EQPASLRF 306 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCcccC--Ccce-EEEEecC--------CHHHHHHHHHHCCeEEEEC--CCCCeEEE
Confidence 3444555667788899989872 221111 1111 1223221 5688999999999998543 23479999
Q ss_pred eccCCCCHHHHHHHHccCChhHHHH
Q 001989 948 EPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 948 s~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
++.. +.+++++ +.+.|+++.+
T Consensus 307 s~~~--~~~~~~~--l~~al~~~~~ 327 (330)
T PRK05664 307 GLPA--DEADWAR--LDQALLAYRK 327 (330)
T ss_pred ECCC--CHHHHHH--HHHHHHHHHh
Confidence 9864 6888999 6666666544
No 491
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.48 E-value=3.7e-12 Score=145.82 Aligned_cols=277 Identities=15% Similarity=0.125 Sum_probs=164.5
Q ss_pred hhhHHHHHHHHHHHHHHHhCCC---ccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCc
Q 001989 627 AQGYQEMFNNLGEWLCTITGFD---SFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGM 702 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~---~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~ 702 (985)
.+|..++.+++.+++.+..|.+ ...+..++|++ +.. .+++.+. ..++|+|+++++.|..+...++..|+
T Consensus 55 ~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~---~~~~~l~----~~~gd~Vl~~~p~y~~~~~~~~~~g~ 127 (357)
T TIGR03539 55 TWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVA---WLPTLLG----LGPGDTVVIPELAYPTYEVGALLAGA 127 (357)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHH---HHHHHHc----CCCCCEEEECCCCcHHHHHHHHhcCC
Confidence 3576677777777777766654 34555555544 432 2222220 14789999999877777666778899
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccc-cccC--C
Q 001989 703 KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMN-AQVG--L 776 (985)
Q Consensus 703 ~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~-~~~~--l 776 (985)
+++.++ |++.+. . +++++|++++| |++|.+.+ ++++|.++|+++|+++++|+++.. ...+ .
T Consensus 128 ~~~~v~-------~~~~l~---~---~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~ 194 (357)
T TIGR03539 128 TPVAAD-------DPTELD---P---VGPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPV 194 (357)
T ss_pred EEeccC-------ChhhcC---c---cCccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCc
Confidence 887664 333322 1 57889999998 57998761 477899999999999999998731 1111 0
Q ss_pred --CCC----CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhh
Q 001989 777 --TSP----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 777 --~~p----g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~ 850 (985)
..+ +...--+++.|++|.|++ .|.++|++++++++...+.... . . ...+.+..++.
T Consensus 195 ~~~~~~~~~~~~~~vi~~~S~SK~~~~----~G~R~G~~i~~~~~~~~~~~~~------------~-~-~~~~~~~~~q~ 256 (357)
T TIGR03539 195 SILDPRVCGGDHTGLLAVHSLSKRSNL----AGYRAGFVAGDPALVAELLTVR------------K-H-AGLMVPAPVQA 256 (357)
T ss_pred cceecccCCCccccEEEEeccccccCC----CceeEEEEecCHHHHHHHHHHH------------h-h-cccCCCHHHHH
Confidence 011 111123777888898854 3688999998876654432100 0 0 01111111121
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH
Q 001989 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 851 ~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
++.++|. ..+.+++..+...++++++.+.|++ ++.+. .+.+..+ +.+..+ .+..++.+.|.+
T Consensus 257 ----~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~--~p~~~~~--~~~~~~-------~~~~~~~~~l~~ 319 (357)
T TIGR03539 257 ----AMVAALG--DDGHVAEQKARYAARRAQLKPALEKAGFRID--HSEAGLY--LWATRG-------EDAWDTVDRLAE 319 (357)
T ss_pred ----HHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--CCCccEE--EEEECC-------CCHHHHHHHHHh
Confidence 1112222 1233444445556777888888876 44432 2222222 223332 256788999999
Q ss_pred CCCccCCCC-C--CCCCEEEEeccCCCCHHHHHH
Q 001989 930 YGFHGPTMS-W--PVPGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 930 ~Gi~~~~~~-~--p~~~~lris~t~~~t~eeId~ 960 (985)
+||.+.... | +..+++||++.. +.++|++
T Consensus 320 ~gV~v~pg~~f~~~~~~~iRis~~~--~~~~i~~ 351 (357)
T TIGR03539 320 LGILVAPGDFYGPAGSQHVRVALTA--TDERIAA 351 (357)
T ss_pred CCEEECCccccCCCCCCeEEEEecC--CHHHHHH
Confidence 999875432 2 124799999865 5788888
No 492
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=99.48 E-value=1.4e-11 Score=141.16 Aligned_cols=267 Identities=13% Similarity=0.058 Sum_probs=174.9
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---- 288 (985)
..++++.+|+++|.++.++.+++|++.++..+..++ . ++||+|+++.-.++.+...++ ..|.++..++.
T Consensus 66 ~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~-~--~~gd~v~~~~p~y~~~~~~~~----~~g~~~~~~~~~~~~ 138 (359)
T PRK03158 66 APELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRAL-L--NPGTNTVMAEPTFSQYRHNAI----IEGAEVREVPLKDGG 138 (359)
T ss_pred HHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHH-h--CCCCEEEEcCCCHHHHHHHHH----HcCCeEEEEecCCCC
Confidence 345778999999998889999999987776555443 2 378999999988888776654 35777777754
Q ss_pred ---hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHh--CCcEEEEEecCccccCCC----CC----CcccceEEE
Q 001989 289 ---KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHA--NGVKVVMATDLLALTILK----PP----GELGADIVV 353 (985)
Q Consensus 289 ---~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~--~galliV~a~~~~lg~l~----~~----~~~GaDi~v 353 (985)
+++++ +++++++|++.+| |.+|.+.+.++|.++++. +|+++++| +........ .+ ...+-.|++
T Consensus 139 ~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~D-e~y~~~~~~~~~~~~~~~~~~~~~vi~~ 217 (359)
T PRK03158 139 HDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLD-EAYYEYVTAEDYPDTLPLLEKYENLIVL 217 (359)
T ss_pred cCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEE-CchHhhcCCcccccHHHHHHhcCCEEEE
Confidence 34555 6778999999998 789999999999998887 48888884 222111110 11 123456788
Q ss_pred ecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 354 GSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 354 ~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
.|. |.|+.| |--+|++.+++++++.+-. .+.+ .+++......++.
T Consensus 218 ~S~SK~~g~~----GlRiG~~v~~~~~~~~~~~----------------------------~~~~--~~~~~~~q~~~~~ 263 (359)
T PRK03158 218 RTFSKAYGLA----ALRVGYGIASEELIEKLNI----------------------------ARPP--FNTTRIAQYAAIA 263 (359)
T ss_pred EechHhhcCc----chhhehhcCCHHHHHHHHH----------------------------hcCC--CCCCHHHHHHHHH
Confidence 886 877532 1123898888777665410 0011 1122221111111
Q ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC-HHHHHHHHHHcCceeeee----cCCeE
Q 001989 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-AHAIASAAYKIEMNLRVV----DSNTV 507 (985)
Q Consensus 433 ~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~~----~~~~l 507 (985)
+ + ...+-++++.++..++.+++.+.|++.| +++.... ..-+.+..+. ..++.+.|.++||.+... .++.+
T Consensus 264 ~-l--~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~-g~~i~~~~~~~~~~~~~~l~~~gv~v~~g~~f~~~~~i 338 (359)
T PRK03158 264 A-L--EDQAFLKECVEKNAEGLEQYYAFCKEYG-LFYYPSQ-TNFIFVDTGRDANELFEALLKKGYIVRSGAALGFPTGV 338 (359)
T ss_pred H-h--cCHHHHHHHHHHHHHHHHHHHHHHHHCC-CeeCCCc-CcEEEEECCCCHHHHHHHHHHCCeEEeeCCCCCCCCeE
Confidence 1 1 1122245666666777778888888886 7765321 1113344443 788999999999988652 25789
Q ss_pred EEEeccCCCHHHHHHHHHHHhC
Q 001989 508 TASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 508 ris~t~~~t~edId~li~aL~~ 529 (985)
|+++. +.+|+++++++|++
T Consensus 339 Ri~~~---~~~~~~~l~~al~~ 357 (359)
T PRK03158 339 RITIG---LKEQNDKIIELLKE 357 (359)
T ss_pred EEecC---CHHHHHHHHHHHHH
Confidence 99977 89999999999974
No 493
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=99.48 E-value=2.4e-12 Score=146.13 Aligned_cols=271 Identities=15% Similarity=0.165 Sum_probs=169.6
Q ss_pred HHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++++++++|.+..++..++|++ +. .++++.+ ++++|+++.+.|+.+...++..|++++.++.+.++
T Consensus 58 ~~lr~~ia~~~~~~~~~I~~t~G~~~~l---~~~~~~~-------~gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~ 127 (337)
T PRK03967 58 DPLREAIAEFYGLDAENIAVGNGSDELI---SYLVKLF-------EGKHIVITPPTFGMYSFYAKLNGIPVIDVPLKEDF 127 (337)
T ss_pred HHHHHHHHHHhCcCcceEEEcCCHHHHH---HHHHHHh-------CCCeEEEeCCChHHHHHHHHHcCCeEEEeecCCCC
Confidence 3677888899998876666666655 33 2223321 46889999887766666678899999999998778
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCC--CccCC-cEEEe
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP--GYIGA-DVCHL 789 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~p--g~~g~-Di~~~ 789 (985)
.+|++++++++ ++++++++++| |++|.+. +.++|.++++ +|+++++|+++.. +..-..+ ..... -+++.
T Consensus 128 ~~d~~~l~~~~----~~~~~v~~~~P~NPtG~~~-~~~~l~~i~~-~~~~ii~De~y~~-~~~~~~~~~~~~~~~vi~l~ 200 (337)
T PRK03967 128 TIDGERIAEKA----KNASAVFICSPNNPTGNLQ-PEEEILKVLE-TGKPVVLDEAYAE-FSGKSLIGLIDEYPNLILLR 200 (337)
T ss_pred CcCHHHHHHhc----cCCCEEEEeCCCCCCCCCC-CHHHHHHHHh-cCCEEEEECchhh-hcccchHHHHhhCCCEEEEe
Confidence 89999998865 46788889999 5799998 7999999995 6999999998741 1110000 01111 25667
Q ss_pred CCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHH
Q 001989 790 NLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 790 s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~ 869 (985)
|+.|+|++| |.++|++++++++...+... . ...+++ ..++ .++...+. ..+-+.
T Consensus 201 S~SK~~~l~----GlRiG~iv~~~~~i~~~~~~------------~--~~~~~~--~~~q----~~~~~~l~--~~~~~~ 254 (337)
T PRK03967 201 TFSKAFGLA----GIRAGYAIANEEIIDALYRI------------K--PPFSLN--ILTM----KIVRLALD--HYDLIE 254 (337)
T ss_pred cchHhhcch----hhhheeeecCHHHHHHHHhh------------c--CCCCCC--HHHH----HHHHHHHh--CHHHHH
Confidence 888888654 78899999987665443211 0 001111 1111 11112222 222333
Q ss_pred HHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEec
Q 001989 870 EASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP 949 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~ 949 (985)
+..+...++++.+.+.|.+. ..+ + +..+ +.+.+ .+.+.|.++||.+........+++||++
T Consensus 255 ~~~~~~~~~r~~l~~~L~~~---~~~-~-~~~~--~~~~~------------~~~~~l~~~gi~v~~~~~~~~~~~Ri~~ 315 (337)
T PRK03967 255 ERIDYIIKERERVRRELGEY---AYP-S-DANF--LLLKL------------DAYDYLLENGIVVRKLSGRLEGHIRVTV 315 (337)
T ss_pred HHHHHHHHHHHHHHHHhccC---cCC-C-CCcE--EEEhH------------HHHHHHHHCCEEEEeCCCCCCCeEEEec
Confidence 33444556667777777652 111 1 2222 22221 2678888999987543222247899998
Q ss_pred cCCCCHHHHHHHHccCChhHHHH
Q 001989 950 TESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 950 t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.+.++.++ +++.|+++.+
T Consensus 316 ---~~~~~~~~--l~~~l~~~~~ 333 (337)
T PRK03967 316 ---GKREENDE--FIKALKEIKE 333 (337)
T ss_pred ---CCHHHHHH--HHHHHHHHHH
Confidence 46778888 6666666554
No 494
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=99.48 E-value=4.6e-12 Score=145.36 Aligned_cols=282 Identities=17% Similarity=0.161 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch-
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK- 289 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~- 289 (985)
..+.+|++.+++++|.+. +..+++||+++.+++.++.+. +||+|++|...++++..++.. .|.+++++|++
T Consensus 25 ~~~~~fE~~~a~~~g~~~--~~~~~sgt~Al~~al~~l~~~--~gdeVi~p~~t~~~~~~ai~~----~G~~pv~~Di~~ 96 (363)
T PF01041_consen 25 PYVEEFEKEFAEYFGVKY--AVAVSSGTSALHLALRALGLG--PGDEVIVPAYTFPATASAILW----AGAEPVFVDIDP 96 (363)
T ss_dssp HHHHHHHHHHHHHHTSSE--EEEESSHHHHHHHHHHHTTGG--TTSEEEEESSS-THHHHHHHH----TT-EEEEE-BET
T ss_pred HHHHHHHHHHHHHhCCCe--EEEeCChhHHHHHHHHhcCCC--cCceEecCCCcchHHHHHHHH----hccEEEEEeccC
Confidence 345668899999999654 888999999999999887765 899999999999999999854 59999998763
Q ss_pred --------hhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC---CCCCcccceEEEecC-
Q 001989 290 --------DIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL---KPPGELGADIVVGSA- 356 (985)
Q Consensus 290 --------~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l---~~~~~~GaDi~v~s~- 356 (985)
++++ ++++|++|+++| ++|...|+++|.++|+++|+.+|-|+ .+++|.. ...|.+| |+.++|.
T Consensus 97 ~~~~id~~~~~~~i~~~t~ai~~~h--~~G~~~d~~~i~~~~~~~~i~lIeD~-a~a~g~~~~g~~~G~~g-d~~~fSf~ 172 (363)
T PF01041_consen 97 ETLNIDPEALEKAITPKTKAILVVH--LFGNPADMDAIRAIARKHGIPLIEDA-AQAFGARYKGRPVGSFG-DIAIFSFH 172 (363)
T ss_dssp TTSSB-HHHHHHHHHTTEEEEEEE---GGGB---HHHHHHHHHHTT-EEEEE--TTTTT-EETTEETTSSS-SEEEEESS
T ss_pred CcCCcCHHHHHHHhccCccEEEEec--CCCCcccHHHHHHHHHHcCCcEEEcc-ccccCceeCCEeccCCC-CceEecCC
Confidence 4666 789999999988 89999999999999999999998854 4566642 2346677 9999996
Q ss_pred --ccccccCCCCCCcEEEEEEch-hhHhcCC-CceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 357 --QRFGVPMGYGGPHAAFLATSQ-EYKRMMP-GRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 357 --k~lg~P~~~GGP~~G~l~~~~-~~~~~lp-~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
|.+. .| ..|++.+++ ++.+++. -+-.|...+ ..++......+..+.-+..+.|+
T Consensus 173 ~~K~i~----~g--eGG~v~~~~~~~~~~~~~~~~~g~~~~----------------~~~~~~~~~~~g~n~rm~~~~AA 230 (363)
T PF01041_consen 173 PTKIIT----TG--EGGAVVTNDPELAERARALRNHGRSRD----------------AFRRYRHELPPGYNFRMSELQAA 230 (363)
T ss_dssp TTSSS-----SS--S-EEEEESTHHHHHHHHHHTBTTEETS----------------ECSTTEESSSS--B-B-BHHHHH
T ss_pred CCCCCc----CC--CCeeEEecHHHHHHHhhhhhccCcCcc----------------ccccccccccCCcccccHHHHHH
Confidence 4452 22 237888875 3333331 011121100 00000000001111112223344
Q ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-C-----CcceEEEecC-----CHHHHHHHHHHcCceeee
Q 001989 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-P-----FFDTVKVKCA-----DAHAIASAAYKIEMNLRV 501 (985)
Q Consensus 433 ~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~-----~~~~~~~~~~-----~~~~v~~~L~~~GI~~~~ 501 (985)
+-+..+ +-+++..++-.++++++.+.|.++.++..... + ....+.+..+ .-.++.+.|.++||..+.
T Consensus 231 igl~QL--~~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~rd~l~~~L~~~GI~~~~ 308 (363)
T PF01041_consen 231 IGLAQL--KRLDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEALADRDELVEALRARGIETRP 308 (363)
T ss_dssp HHHHHH--HTHHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGCSTHHHHHHHHHHTTBEEBC
T ss_pred HHHHHH--HHhhhhHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccccccccchHHHHHHHHHHCCCcccc
Confidence 322222 34677777778999999999999855765421 1 1223555544 268899999999996421
Q ss_pred ec----------------------------CCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 502 VD----------------------------SNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 502 ~~----------------------------~~~lris~t~~~t~edId~li~aL~ 528 (985)
.. ...+.+-+++.-|.+|+++++++|+
T Consensus 309 ~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 309 HYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR 363 (363)
T ss_dssp STSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred cccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence 00 1347788888899999999999874
No 495
>PRK07505 hypothetical protein; Provisional
Probab=99.48 E-value=2.1e-11 Score=141.90 Aligned_cols=318 Identities=15% Similarity=0.158 Sum_probs=176.5
Q ss_pred CCccceecCCCCCC-CCCcHHHHHHHHhCCc-cccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHH
Q 001989 164 NKVYKSFIGMGYYN-THVPPVILRNIMENPA-WYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAA 241 (985)
Q Consensus 164 n~~~~~~lG~g~y~-~~~p~~v~~~i~~~~~-~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ 241 (985)
++.|.+|.+.++.+ |.-|.++. ++.+.-. +. ..+++.+.. ....+...++++.+++++|. ...++.+|+.+.
T Consensus 45 g~~~ld~~s~~~lgl~~~p~v~~-A~~~~l~~~g-~~~~~~~~~-~~~~~~~~~l~~~la~~~~~---~~~~~~sG~~a~ 118 (402)
T PRK07505 45 GHTFVNFVSCSYLGLDTHPAIIE-GAVDALKRTG-SLHLSSSRT-RVRSQILKDLEEALSELFGA---SVLTFTSCSAAH 118 (402)
T ss_pred CceEEEeecCCccCCCCCHHHHH-HHHHHHHHhC-CCCCCccch-hhhhHHHHHHHHHHHHHhCC---CEEEECChHHHH
Confidence 34466666665555 55565553 4443211 10 001221111 12356778899999999997 345555666666
Q ss_pred HHHH-HHhh-h-hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hhhhc-cCCCEeEEEEEcC-CCCeeec
Q 001989 242 EAMA-MCNN-I-QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KDIDY-KSGDVCGVLVQYP-GTEGEVL 313 (985)
Q Consensus 242 ea~~-~a~~-~-~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~l~~-l~~~t~~V~v~~p-n~~G~v~ 313 (985)
++++ ++.. . ..++++.|+.+...|+++..... ..+ .+.+++.++. +++++ ++++++++++.+| |.+|.+.
T Consensus 119 ~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~-~~~-~~~~v~~~~~~d~~~l~~~~~~~~~~~vl~~p~~~~G~~~ 196 (402)
T PRK07505 119 LGILPLLASGHLTGGVPPHMVFDKNAHASLNILKG-ICA-DETEVETIDHNDLDALEDICKTNKTVAYVADGVYSMGGIA 196 (402)
T ss_pred HHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhh-hhh-cCCeEEEeCCCCHHHHHHHHhcCCCEEEEEecccccCCcC
Confidence 6554 3322 1 11233445666789998643221 122 2456666654 55666 6667778888887 6789999
Q ss_pred cHHHHHHHHHhCCcEEEEEecCccccCCCCC------Ccccc---e--EEEecC-ccccccCCCCCCcEEEEEE-chhhH
Q 001989 314 DYGDFIKNAHANGVKVVMATDLLALTILKPP------GELGA---D--IVVGSA-QRFGVPMGYGGPHAAFLAT-SQEYK 380 (985)
Q Consensus 314 di~~I~~~a~~~galliV~a~~~~lg~l~~~------~~~Ga---D--i~v~s~-k~lg~P~~~GGP~~G~l~~-~~~~~ 380 (985)
|+++|.++|+++|+++++| +.++++.+.+. ..+|. | +++.+. |.|+++ | |++.+ ++++.
T Consensus 197 ~~~~i~~l~~~~~~~li~D-Ea~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~------G-g~~~~~~~~~~ 268 (402)
T PRK07505 197 PVKELLRLQEKYGLFLYID-DAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS------G-GVIMLGDAEQI 268 (402)
T ss_pred CHHHHHHHHHHcCCEEEEE-CcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc------C-eEEEeCCHHHH
Confidence 9999999999999999994 34433222111 12332 4 555565 877532 2 56654 55555
Q ss_pred hcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHH
Q 001989 381 RMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALG 460 (985)
Q Consensus 381 ~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~ 460 (985)
+.+... ...+.+ .+ ++++ .+..+..+++ ..+..+.+.++.++..++..++...
T Consensus 269 ~~~~~~----------~~~~t~------------~~--~~~~-~a~aa~~a~l--~~~~~~~~~~~~~~l~~~~~~~~~~ 321 (402)
T PRK07505 269 ELILRY----------AGPLAF------------SQ--SLNV-AALGAILASA--EIHLSEELDQLQQKLQNNIALFDSL 321 (402)
T ss_pred HHHHHh----------CCCcee------------CC--CCCH-HHHHHHHHHH--HHHhccCcHHHHHHHHHHHHHHHHH
Confidence 544100 000100 01 1110 1222222222 3445556666666655555554433
Q ss_pred HhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeeec-------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 461 LKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVVD-------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 461 L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~~-------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+... ....++....+..+. +.++.++|.++||.++... .+.+|++++..+|+||+|+++++|..
T Consensus 322 ~~~~-----~~g~~~~i~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~ 395 (402)
T PRK07505 322 IPTE-----QSGSFLPIRLIYIGDEDTAIKAAKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKE 395 (402)
T ss_pred HHhc-----CCCCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHH
Confidence 2211 011222222222222 6789999999999886531 25899999999999999999999974
No 496
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=99.47 E-value=1.2e-11 Score=144.08 Aligned_cols=277 Identities=17% Similarity=0.166 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-hh--c-C---CCCEEE-EcCCCChhHHHHHHHh-------
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQ--K-G---KKKTFI-IASNCHPQTIDICITR------- 275 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~--~-~---~g~~Vl-v~~~~H~s~~~~~~~~------- 275 (985)
+...++++.+++++|.+ .+.++++||.+.|+++.+.+ +. + + .+++|| .+...|.+....+..-
T Consensus 83 ~~~~~l~~~l~~~~~~~--~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~ 160 (401)
T PRK00854 83 DQLAPLYEELAALTGSH--KVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARG 160 (401)
T ss_pred HHHHHHHHHHHhhCCCC--EEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccc
Confidence 45567889999999875 47888999999998885432 21 0 1 235665 4556777665544200
Q ss_pred -hcCCCeEEEEe---Cchhhhc-cCCCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecCcc-ccCCCC-
Q 001989 276 -ADGFDIKVVVS---DLKDIDY-KSGDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLA-LTILKP- 343 (985)
Q Consensus 276 -a~~~gi~v~~v---~~~~l~~-l~~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~~-lg~l~~- 343 (985)
.......+..+ |++++++ +.+++++|++.+| |..|.+.| +++|.++|+++|+++++| +..+ +|....
T Consensus 161 ~~~~~~~~~~~~~~~d~~~le~~i~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~D-Ev~~g~g~~g~~ 239 (401)
T PRK00854 161 GFGPFTPGFRVVPFGDAEALEAAITPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILD-EIQTGLGRTGKL 239 (401)
T ss_pred cCCCCCCCeEEeCCCCHHHHHHHhCCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe-chhhCCCCCchH
Confidence 00111233343 4567777 7788999999887 78999886 999999999999999994 2333 432210
Q ss_pred ----CCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 344 ----PGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 344 ----~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
......|+++. +|+|++ |.-.+|++.+++++++.+... .. + ..
T Consensus 240 ~~~~~~g~~~D~~~~-~K~l~g----g~~~ig~v~~~~~~~~~l~~~----------~~-----------------~-~t 286 (401)
T PRK00854 240 LAEEHEGIEADVTLI-GKALSG----GFYPVSAVLSNSEVLGVLKPG----------QH-----------------G-ST 286 (401)
T ss_pred hHHhhcCCCCCEEEe-cccccC----CccCeEEEEEcHHHHhcccCC----------CC-----------------C-CC
Confidence 11234688876 488852 221257788888877655210 00 0 01
Q ss_pred ccchh-HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC--CC--CcceEEEecCC--HHHHHHHH
Q 001989 420 ICTAQ-ALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG--LP--FFDTVKVKCAD--AHAIASAA 492 (985)
Q Consensus 420 i~t~~-~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~--~~--~~~~~~~~~~~--~~~v~~~L 492 (985)
+|.+. ...+..+++ ..+..+ .+.++..++.+++.+.|++++ ..... .+ .+-.+.+..+. ..++.+.|
T Consensus 287 ~~~~~~~~aa~~a~L--~~l~~~---~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~g~g~~~~i~~~~~~~~~~~~~~~L 360 (401)
T PRK00854 287 FGGNPLACAVARAAL--KVLTEE---GMIENAAEMGAYFLEGLRSIR-SNIVREVRGRGLMLAVELEPEAGGARQYCEAL 360 (401)
T ss_pred CCcCHHHHHHHHHHH--HHHHHc---CHHHHHHHHHHHHHHHHHhhc-cCceEEEeccceEEEEEEecCchhHHHHHHHH
Confidence 11111 222222222 333222 255677788899999998875 32221 11 11122232222 67899999
Q ss_pred HHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 493 YKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 493 ~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++||.+.....+.+|++++..+|++|||++++.|..
T Consensus 361 ~~~GV~v~~~~~~~lR~~p~~~~t~e~i~~~i~~l~~ 397 (401)
T PRK00854 361 KERGLLAKDTHDHTIRLAPPLVITREQVDWALEQIAK 397 (401)
T ss_pred HHCCeEEecCCCCEEEEeCCcccCHHHHHHHHHHHHH
Confidence 9999998754457999999999999999999999863
No 497
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=99.47 E-value=5.3e-12 Score=144.76 Aligned_cols=269 Identities=17% Similarity=0.228 Sum_probs=173.1
Q ss_pred HHHHHHHHhcC------CCCc-ceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC
Q 001989 215 NFQTMIADLTG------LPMS-NASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD 287 (985)
Q Consensus 215 e~q~~ia~L~g------~~~~-~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~ 287 (985)
++++.+|++++ .+.. ++.+..|+.+++..+...++. +++++|++++-.|+.+...++. .|++++.++
T Consensus 48 ~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~~--~~~~~vlv~~P~y~~~~~~~~~----~g~~~~~~~ 121 (363)
T PF00155_consen 48 ELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLKI--NPGDTVLVPDPCYPSYIEAARL----LGAEVIPVP 121 (363)
T ss_dssp HHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHHS--STTSEEEEEESSSTHHHHHHHH----TTSEEEEEE
T ss_pred HHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhcccc--cccccceecCCccccccccccc----cCceeeecc
Confidence 46678888888 6666 777777777666555544422 3789999999999999998864 466666665
Q ss_pred ----------chhhhc-cCC------CEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCCCCC--
Q 001989 288 ----------LKDIDY-KSG------DVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILKPP-- 344 (985)
Q Consensus 288 ----------~~~l~~-l~~------~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l~~~-- 344 (985)
+++|++ +++ ++++|++.+| |++|.+.+ +.+|+++|+++|+++++|. ..+......+
T Consensus 122 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De-~y~~~~~~~~~~ 200 (363)
T PF00155_consen 122 LDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDE-AYSDLIFGDPDF 200 (363)
T ss_dssp EEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEE-TTTTGBSSSSHT
T ss_pred ccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeee-ceeccccCCCcc
Confidence 345555 443 5788899998 78998764 5666666999999999953 3332222211
Q ss_pred ------Ccccce-EEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccccccccccccc
Q 001989 345 ------GELGAD-IVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKA 416 (985)
Q Consensus 345 ------~~~GaD-i~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~a 416 (985)
.+.+.+ |++.|. |.||.| |--+|++.+++++.+.+.. . .
T Consensus 201 ~~~~~~~~~~~~vi~~~S~SK~~g~~----GlRvG~i~~~~~~~~~l~~----------------------------~-~ 247 (363)
T PF00155_consen 201 GPIRSLLDEDDNVIVVGSLSKSFGLP----GLRVGYIVAPPELIERLRR----------------------------F-Q 247 (363)
T ss_dssp HHHHGHHTTTSTEEEEEESTTTTTSG----GGTEEEEEEEHHHHHHHHH----------------------------H-H
T ss_pred Ccccccccccccceeeeecccccccc----ccccccccchhhhhhhhhh----------------------------c-c
Confidence 012233 777776 877643 1236899998877765510 0 0
Q ss_pred CCCccchhHHHHHHHHHHHHH-hCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEE-ecCC--HHHHHHHH
Q 001989 417 TSNICTAQALLANMAAMYAVY-HGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKV-KCAD--AHAIASAA 492 (985)
Q Consensus 417 tsni~t~~~l~a~~aa~~l~~-~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~-~~~~--~~~v~~~L 492 (985)
++..++ ......++.++... ...+-++++.++..++.+++.+.|++.| +.+..++ .+-+.+ ..+. ..++.+.|
T Consensus 248 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~L 324 (363)
T PF00155_consen 248 RSGLSS-SPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEIG-ITVLPPE-AGFFLWVRLDPNDAEELAQEL 324 (363)
T ss_dssp HHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEEEHHS-BSSEEEEEESHHHHHHHHHHH
T ss_pred cccccc-chhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHhh-hheeecc-CccEEEEEcccchHHHHHHHH
Confidence 011111 22222222221111 0111457788888999999999999887 8876422 122222 2332 57899999
Q ss_pred HHc-Cceeeee----cCCeEEEEeccCCCHHHHHHHHHHH
Q 001989 493 YKI-EMNLRVV----DSNTVTASFDETTTLEDVDKLFIVF 527 (985)
Q Consensus 493 ~~~-GI~~~~~----~~~~lris~t~~~t~edId~li~aL 527 (985)
.++ ||.+... .++.+|+++ ...++|++++++++|
T Consensus 325 ~~~~gi~v~pg~~~~~~~~iRi~~-a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 325 LEEYGILVRPGSYFGVPGYIRISL-ASHSEEDLEEALERL 363 (363)
T ss_dssp HHHHTEEEEEGGGGTSTTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred HHhCCEEEEecCCCCCCCEEEEEe-ccCCHHHHHHHHhhC
Confidence 988 9987542 267899999 889999999999876
No 498
>PRK06108 aspartate aminotransferase; Provisional
Probab=99.47 E-value=2.1e-11 Score=140.91 Aligned_cols=277 Identities=16% Similarity=0.160 Sum_probs=174.9
Q ss_pred hHHHHHHHHHHHHHHhcC--CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001989 208 GRLESLLNFQTMIADLTG--LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 208 g~l~~i~e~q~~ia~L~g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~ 285 (985)
|..+....+.+.+.+.+| .++.++.++.|++.++..++.++ .++||+|++++-.|+.+...++ ..|++++.
T Consensus 62 G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l---~~~gd~vl~~~p~y~~~~~~~~----~~g~~~~~ 134 (382)
T PRK06108 62 GIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQAL---VGPGDEVVAVTPLWPNLVAAPK----ILGARVVC 134 (382)
T ss_pred CCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHh---cCCCCEEEEeCCCccchHHHHH----HCCCEEEE
Confidence 433333344455555667 66778989999987766555443 1378999999999998877664 45788777
Q ss_pred eCc-----------hhhhc-cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCC----CC-
Q 001989 286 SDL-----------KDIDY-KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK----PP- 344 (985)
Q Consensus 286 v~~-----------~~l~~-l~~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~----~~- 344 (985)
++. +++++ +++++++|++++| |.+|.+. ++++|+++|+++|+++++|. ..+..... .+
T Consensus 135 v~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De-~y~~~~~~~~~~~~~ 213 (382)
T PRK06108 135 VPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADE-VYERLYYAPGGRAPS 213 (382)
T ss_pred eeCCCCCCCccCCHHHHHHhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeh-hhhhhccCCCCCCCC
Confidence 654 23444 6678899999988 7899775 57889999999999999942 21111110 00
Q ss_pred -----CcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCC
Q 001989 345 -----GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATS 418 (985)
Q Consensus 345 -----~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~ats 418 (985)
....-.++++|. |.|+.| |-.+|++++++++++.+.... .. .
T Consensus 214 ~~~~~~~~~~~i~~~S~SK~~g~~----G~RiG~~~~~~~~~~~~~~~~--------------------------~~--~ 261 (382)
T PRK06108 214 FLDIAEPDDRIIFVNSFSKNWAMT----GWRLGWLVAPPALGQVLEKLI--------------------------EY--N 261 (382)
T ss_pred HhhcCCCcCCEEEEeechhhccCc----ccceeeeeCCHHHHHHHHHHH--------------------------Hh--c
Confidence 111235778886 877532 334799999888776551000 00 0
Q ss_pred CccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHH-H
Q 001989 419 NICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAY-K 494 (985)
Q Consensus 419 ni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~-~ 494 (985)
..+.+.. ...++..+...+.+-++++.++..++.+++.+.|+++.++++..+....-+.++.+. ..++.++|. +
T Consensus 262 ~~~~~~~--~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~~~~~~l~~~~~~~~~~~~ll~~ 339 (382)
T PRK06108 262 TSCVAQF--VQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRALPGVEVAKPDGAMYAFFRIPGVTDSLALAKRLVDE 339 (382)
T ss_pred ccCCChH--HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCCCCCHHHHHHHHHHh
Confidence 1111111 112222111223344678888888999999999988733776532111112344442 678888875 5
Q ss_pred cCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 495 IEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 495 ~GI~~~~~------~~~~lris~t~~~t~edId~li~aL~ 528 (985)
+||.+... ..+.+|+|++. +.++++..++.|.
T Consensus 340 ~gV~v~pg~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~ 377 (382)
T PRK06108 340 AGLGLAPGTAFGPGGEGFLRWCFAR--DPARLDEAVERLR 377 (382)
T ss_pred CCEEEeCchhhCCCCCCEEEEEecC--CHHHHHHHHHHHH
Confidence 79987431 14789999997 8899998888776
No 499
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=99.47 E-value=4.2e-12 Score=149.67 Aligned_cols=327 Identities=14% Similarity=0.085 Sum_probs=175.5
Q ss_pred hhHHHHHHHHH-HHHHHHhCC---Ccc--ceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHC
Q 001989 628 QGYQEMFNNLG-EWLCTITGF---DSF--SLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMC 700 (985)
Q Consensus 628 ~G~~~~~~e~~-~~la~l~G~---~~~--~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~ 700 (985)
+|.....+++. .++.+.++. +.. .++. +++++|+..++.++..- .. ..+||+|+++.+.+..+...+++.
T Consensus 128 ~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~~l~~~--~l-l~pGD~Vlv~~P~y~~y~~~~~l~ 204 (521)
T TIGR03801 128 DRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFDSLKAN--EL-LKKGDKIALMTPIFTPYLEIPELP 204 (521)
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhHh--hc-CCCCCEEEEeCCCcHHHHHHHHHh
Confidence 34445555544 344444332 222 4444 44555654443332110 00 147899999998666666655554
Q ss_pred --CcEEEEEcCCC--C-----CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHc--CCEEEEE
Q 001989 701 --GMKIVSVGTDA--K-----GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDN--GGQVYMD 766 (985)
Q Consensus 701 --G~~vv~v~~d~--~-----g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~--galliVD 766 (985)
|++++.++.++ + +.+|+++|+++++ +++++|++++| |++|.+. ..+++|+++|+++ +++++.|
T Consensus 205 ~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~---~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~D 281 (521)
T TIGR03801 205 RYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRD---PSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTD 281 (521)
T ss_pred cCCcEEEEeecccccccccccCCCCHHHHHHhcC---CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEEC
Confidence 77888887753 1 6789999998876 78999999999 5799986 2478888899986 9999999
Q ss_pred ccccccccCCCCCCccCC--cEEEeCCcccccccCCCCCCceEEEEEccc-----ccCcCCCCcc--------ccCCCC-
Q 001989 767 GANMNAQVGLTSPGYIGA--DVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-----LAPFLPSHPV--------VSTGGI- 830 (985)
Q Consensus 767 ~a~~~~~~~l~~pg~~g~--Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-----l~~~lp~~~~--------g~~~~~- 830 (985)
.++..-...+........ -+++.|+.|+|++| |+++|++++.++ ++..+|.... ..+.+.
T Consensus 282 EvY~~f~~~~~sl~~~~~~~vI~v~SfSK~fg~~----G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~ 357 (521)
T TIGR03801 282 DVYGTFVDDFRSLFAELPYNTIGVYSFSKYFGAT----GWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPR 357 (521)
T ss_pred CCchhhcccccchhhhCCCCEEEEEcchhhccCc----hhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChh
Confidence 987411111111111111 36778889998664 899999998754 3332321100 000000
Q ss_pred -CCC--------C--CCCCCCCCCCcchhhhHHHH-HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCC
Q 001989 831 -PAP--------E--KSQPLGTIAAAPWGSALILP-ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVN 898 (985)
Q Consensus 831 -~~~--------~--~~~~~~~i~s~~~g~~~~~~-~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~ 898 (985)
.++ + ....+.+.++ ..+.-.++ ++.+.+. .+.+-..+..+...++.+.+.+.| ++.+....+.
T Consensus 358 ~~~fidr~vadsr~v~~~~~~g~s~--p~Q~q~al~a~~all~-~~~~y~~~~~~~~~~R~~~l~~~L--g~~~~~~~~~ 432 (521)
T TIGR03801 358 KLKFIDRLVADSRQVALNHTAGLST--PQQVQMALFSLFALMD-KENAYKAETKDICRRREKLLFRGL--GLPLQEDPND 432 (521)
T ss_pred hhhhHHHHHHHHHHHHHhccCCCCc--HHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHhc--CCCCcCCCCC
Confidence 000 0 0011222221 11211111 1112222 123333344445566667777777 3332211222
Q ss_pred CceeeEEEEEecCcccc-----------CCCCHHHHHHHHHHC-CCcc-CCCCCC-CCCEEEEeccCCCCHHHHHHHHcc
Q 001989 899 GTVAHEFIVDLRGLKNT-----------AGIEPEDVAKRLMDY-GFHG-PTMSWP-VPGTLMIEPTESESKSWTGIVMLS 964 (985)
Q Consensus 899 ~~~~~~~iv~~~~~~~~-----------~g~~~~~v~~~L~~~-Gi~~-~~~~~p-~~~~lris~t~~~t~eeId~~~~~ 964 (985)
+.++ +.++++.+... ...+..+++.+|.++ |+.+ ++..|. ..+.+|||+.. .+++++.+ ..
T Consensus 433 g~~Y--~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~gV~v~PG~~Fg~~~~~vRisla~-l~~~~~~~--~~ 507 (521)
T TIGR03801 433 VAYY--TLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETGIVLLPGGGFGGPEWSVRVSLAN-LNEYDYAE--IG 507 (521)
T ss_pred eEEE--EEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHhCCEEEeCchhcCCCCCeEEEEecC-CCHHHHHH--HH
Confidence 3333 33455421100 012467888888765 8874 333332 24689999843 46677777 55
Q ss_pred CChhHHHHhh
Q 001989 965 SPSEKKLHRL 974 (985)
Q Consensus 965 ~~l~~~~~~~ 974 (985)
+.|++++.+.
T Consensus 508 ~rl~~~~~~~ 517 (521)
T TIGR03801 508 RAIRKILDEY 517 (521)
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 500
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=99.47 E-value=5.7e-12 Score=144.04 Aligned_cols=210 Identities=20% Similarity=0.189 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
...+++.++++.|.+.+. .++||..|+.++++++. +++++||+++..++..... ....|+++.+++.
T Consensus 57 ~~~le~~la~Le~g~~a~-~~~SGmaAi~~~l~~ll--------~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~ 127 (386)
T PF01053_consen 57 VRALEQRLAALEGGEDAL-LFSSGMAAISAALLALL--------KPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDP 127 (386)
T ss_dssp HHHHHHHHHHHHT-SEEE-EESSHHHHHHHHHHHHS---------TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEEST
T ss_pred HHHHHHHHHHhhccccee-eccchHHHHHHHHHhhc--------ccCCceEecCCccCcchhhhhhhhcccCcEEEEeCc
Confidence 457889999999987654 45678777755555442 3678899877644433222 3468999999986
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcC-CEEEEEccccccccCCCCCCccCCcEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNG-GQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~g-alliVD~a~~~~~~~l~~pg~~g~Di~ 787 (985)
. |+++|+++++ ++|++|+++.| |++.-+. ||++|+++||++| ++++||.+- +-..+.+|-.+|+|++
T Consensus 128 ~-----d~~~l~~~l~---~~t~~v~~EspsNP~l~v~-Dl~~i~~~a~~~g~~~~vVDnT~--atp~~~~pL~~GaDiv 196 (386)
T PF01053_consen 128 T-----DLEALEAALR---PNTKLVFLESPSNPTLEVP-DLEAIAKLAKEHGDILVVVDNTF--ATPYNQNPLELGADIV 196 (386)
T ss_dssp T-----SHHHHHHHHC---TTEEEEEEESSBTTTTB----HHHHHHHHHHTTT-EEEEECTT--THTTTC-GGGGT-SEE
T ss_pred h-----hHHHHHhhcc---ccceEEEEEcCCCcccccc-cHHHHHHHHHHhCCceEEeeccc--cceeeeccCcCCceEE
Confidence 4 8999999998 89999999998 5666665 8999999999999 999999764 3334567889999999
Q ss_pred EeCCcccccccCCCCCC-ceEEEEEcc--cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 788 HLNLHKTFCIPHGGGGP-GMGPIGVKK--HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGP-g~G~i~~~~--~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
+.|+.|+++ +.+- -+|.++++. ++.+.+.... +.++...+ ...||.. ..|
T Consensus 197 v~S~TKyl~----Ghsdv~~G~vv~~~~~~~~~~l~~~~-------------~~~G~~~~--------p~da~ll--~rg 249 (386)
T PF01053_consen 197 VHSATKYLS----GHSDVMGGAVVVNGSSELYDRLREFR-------------RLLGATLS--------PFDAWLL--LRG 249 (386)
T ss_dssp EEETTTTTT----TSSSE-EEEEEESSHHHHHHHHHHHH-------------HHHT-B----------HHHHHHH--HHH
T ss_pred Eeecccccc----CCcceeeEEEEECchhhhhhhhcchh-------------hhcCccch--------HHHHHHH--hcC
Confidence 999999984 1222 377887765 3433321000 01112211 1234443 345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccC
Q 001989 865 SKGLTEASKIAILNANYMAKRLEKHY 890 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~g~ 890 (985)
-+.+..++++..+++..+++.|++..
T Consensus 250 l~Tl~~R~~~~~~nA~~lA~~L~~hp 275 (386)
T PF01053_consen 250 LRTLPLRMERQNENAEALAEFLEEHP 275 (386)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHTST
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 56677888899999999999998753
Done!