Query 001989
Match_columns 985
No_of_seqs 764 out of 5466
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 07:40:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001989.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001989hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wyu_A Glycine dehydrogenase ( 100.0 1.1E-60 3.8E-65 559.5 43.3 421 100-529 1-435 (438)
2 1wyu_B Glycine dehydrogenase s 100.0 9.9E-42 3.4E-46 402.9 38.4 405 547-973 29-440 (474)
3 1wyu_B Glycine dehydrogenase s 100.0 8E-37 2.8E-41 360.9 37.5 374 129-529 29-436 (474)
4 1wyu_A Glycine dehydrogenase ( 100.0 1.3E-36 4.6E-41 355.4 36.4 406 513-971 4-437 (438)
5 3mc6_A Sphingosine-1-phosphate 100.0 2.1E-29 7.1E-34 299.3 30.8 382 560-977 37-440 (497)
6 3mc6_A Sphingosine-1-phosphate 100.0 3E-27 1E-31 280.6 34.4 389 102-529 2-432 (497)
7 2dgk_A GAD-beta, GADB, glutama 100.0 1.4E-26 4.6E-31 271.7 34.4 384 560-977 17-437 (452)
8 3mad_A Sphingosine-1-phosphate 100.0 4.4E-26 1.5E-30 271.8 33.9 384 559-976 69-471 (514)
9 2jis_A Cysteine sulfinic acid 99.9 3E-26 1E-30 273.3 26.0 397 550-973 72-514 (515)
10 3f9t_A TDC, L-tyrosine decarbo 99.9 9.9E-25 3.4E-29 249.4 36.2 367 561-972 5-396 (397)
11 3vp6_A Glutamate decarboxylase 99.9 1.7E-25 5.9E-30 266.2 29.2 392 560-975 68-506 (511)
12 2jis_A Cysteine sulfinic acid 99.9 3.4E-25 1.2E-29 264.2 31.6 359 138-529 79-510 (515)
13 4e1o_A HDC, histidine decarbox 99.9 4.5E-25 1.5E-29 260.8 31.8 395 549-974 40-478 (481)
14 3k40_A Aromatic-L-amino-acid d 99.9 3.6E-25 1.2E-29 261.1 28.5 397 549-976 35-473 (475)
15 2okj_A Glutamate decarboxylase 99.9 3E-25 1E-29 264.0 28.0 390 560-974 65-502 (504)
16 1js3_A DDC;, DOPA decarboxylas 99.9 7.6E-25 2.6E-29 259.3 30.1 387 560-978 45-478 (486)
17 2dgk_A GAD-beta, GADB, glutama 99.9 8.4E-24 2.9E-28 248.0 36.8 347 139-529 16-429 (452)
18 3hbx_A GAD 1, glutamate decarb 99.9 2.2E-23 7.5E-28 247.6 37.9 378 560-976 31-446 (502)
19 2qma_A Diaminobutyrate-pyruvat 99.9 3.9E-23 1.3E-27 245.3 31.6 382 565-974 75-496 (497)
20 2z67_A O-phosphoseryl-tRNA(SEC 99.9 1.5E-23 5.3E-28 246.0 25.9 358 560-970 57-454 (456)
21 4hvk_A Probable cysteine desul 99.9 7.6E-23 2.6E-27 232.5 30.7 315 627-979 38-378 (382)
22 3e9k_A Kynureninase; kynurenin 99.9 1.9E-23 6.5E-28 245.8 22.8 306 212-529 112-456 (465)
23 3zrp_A Serine-pyruvate aminotr 99.9 7.5E-23 2.6E-27 233.2 27.0 317 629-976 32-365 (384)
24 2dr1_A PH1308 protein, 386AA l 99.9 1.8E-22 6.1E-27 230.4 29.6 315 630-975 51-380 (386)
25 1elu_A L-cysteine/L-cystine C- 99.9 1.4E-21 4.9E-26 223.2 37.0 314 199-529 47-387 (390)
26 3nnk_A Ureidoglycine-glyoxylat 99.9 7.9E-23 2.7E-27 235.5 26.5 318 630-976 44-392 (411)
27 3f9t_A TDC, L-tyrosine decarbo 99.9 3.1E-21 1.1E-25 220.4 36.7 347 140-529 4-393 (397)
28 3vp6_A Glutamate decarboxylase 99.9 4.2E-22 1.4E-26 237.0 30.2 363 138-529 66-500 (511)
29 3isl_A Purine catabolism prote 99.9 2.6E-22 8.8E-27 231.6 27.5 317 630-976 42-392 (416)
30 3lvm_A Cysteine desulfurase; s 99.9 4E-21 1.4E-25 222.5 36.6 315 627-978 63-403 (423)
31 2okj_A Glutamate decarboxylase 99.9 1.1E-21 3.8E-26 233.2 32.7 358 139-529 64-497 (504)
32 1kmj_A Selenocysteine lyase; p 99.9 3.2E-21 1.1E-25 221.4 35.4 307 208-529 64-400 (406)
33 1qz9_A Kynureninase; kynurenin 99.9 1.1E-21 3.8E-26 226.6 31.6 306 208-529 68-397 (416)
34 4hvk_A Probable cysteine desul 99.9 2E-21 6.8E-26 220.8 32.2 292 205-529 37-368 (382)
35 3kgw_A Alanine-glyoxylate amin 99.9 3.4E-22 1.2E-26 228.5 25.8 318 631-977 55-391 (393)
36 1eg5_A Aminotransferase; PLP-d 99.9 3E-21 1E-25 219.8 33.1 307 630-976 42-378 (384)
37 3bc8_A O-phosphoseryl-tRNA(SEC 99.9 6.5E-22 2.2E-26 227.3 27.4 373 560-976 22-445 (450)
38 4eb5_A Probable cysteine desul 99.9 1.8E-21 6.3E-26 221.7 30.9 311 628-976 39-375 (382)
39 2z67_A O-phosphoseryl-tRNA(SEC 99.9 3.8E-22 1.3E-26 234.2 25.6 370 99-529 26-453 (456)
40 3mad_A Sphingosine-1-phosphate 99.9 3.7E-21 1.3E-25 229.3 34.1 360 135-529 65-464 (514)
41 1t3i_A Probable cysteine desul 99.9 1.6E-21 5.6E-26 225.0 30.1 319 631-976 71-415 (420)
42 1kmj_A Selenocysteine lyase; p 99.9 1.1E-21 3.9E-26 225.1 28.6 315 630-974 65-405 (406)
43 2huf_A Alanine glyoxylate amin 99.9 1.4E-21 4.7E-26 223.9 29.1 316 631-981 51-390 (393)
44 3cai_A Possible aminotransfera 99.9 3.6E-21 1.2E-25 221.5 32.2 296 207-529 65-404 (406)
45 2z9v_A Aspartate aminotransfer 99.9 1.1E-21 3.8E-26 224.6 27.2 317 630-975 40-372 (392)
46 1t3i_A Probable cysteine desul 99.9 5.2E-21 1.8E-25 220.8 32.2 305 210-529 71-408 (420)
47 2yrr_A Aminotransferase, class 99.9 6.6E-22 2.3E-26 222.4 23.7 308 630-972 31-351 (353)
48 3f0h_A Aminotransferase; RER07 99.9 5.5E-22 1.9E-26 225.8 23.3 310 629-972 49-372 (376)
49 3e9k_A Kynureninase; kynurenin 99.9 5.7E-22 2E-26 233.2 23.9 311 632-974 111-461 (465)
50 2ch1_A 3-hydroxykynurenine tra 99.9 1.7E-21 5.7E-26 223.5 26.6 313 632-976 51-385 (396)
51 1m32_A 2-aminoethylphosphonate 99.9 2.3E-21 7.8E-26 219.1 27.3 315 633-974 38-365 (366)
52 1elu_A L-cysteine/L-cystine C- 99.9 4E-21 1.4E-25 219.5 29.4 305 632-968 59-386 (390)
53 1vjo_A Alanine--glyoxylate ami 99.9 1.8E-21 6.2E-26 223.1 25.8 310 630-971 65-392 (393)
54 1js3_A DDC;, DOPA decarboxylas 99.9 7.2E-21 2.5E-25 225.1 31.1 354 140-529 45-469 (486)
55 3cai_A Possible aminotransfera 99.9 2.7E-21 9.1E-26 222.7 26.0 307 630-969 67-404 (406)
56 3hbx_A GAD 1, glutamate decarb 99.9 9E-20 3.1E-24 216.5 39.1 353 139-529 30-439 (502)
57 1iug_A Putative aspartate amin 99.9 3.1E-21 1.1E-25 217.2 25.0 307 630-974 32-348 (352)
58 3ke3_A Putative serine-pyruvat 99.9 1.9E-21 6.4E-26 222.6 23.4 317 628-976 31-378 (379)
59 3e77_A Phosphoserine aminotran 99.9 5.4E-21 1.9E-25 217.3 26.3 315 179-529 23-370 (377)
60 3isl_A Purine catabolism prote 99.9 2.3E-20 7.9E-25 215.3 29.4 331 171-529 15-385 (416)
61 3vax_A Putative uncharacterize 99.9 7.1E-21 2.4E-25 218.5 24.2 308 628-973 59-399 (400)
62 3zrp_A Serine-pyruvate aminotr 99.9 3.4E-20 1.2E-24 211.1 29.3 321 171-529 6-358 (384)
63 4eb5_A Probable cysteine desul 99.9 1.7E-19 5.8E-24 205.4 34.1 291 206-529 38-368 (382)
64 3ke3_A Putative serine-pyruvat 99.9 5.6E-21 1.9E-25 218.6 21.7 292 209-529 33-371 (379)
65 3nnk_A Ureidoglycine-glyoxylat 99.9 3.7E-20 1.3E-24 213.2 28.6 330 170-529 16-385 (411)
66 1iug_A Putative aspartate amin 99.9 1.3E-19 4.6E-24 203.8 32.4 318 171-529 5-343 (352)
67 2e7j_A SEP-tRNA:Cys-tRNA synth 99.9 4.8E-21 1.7E-25 217.4 20.7 298 634-974 55-370 (371)
68 1c4k_A Protein (ornithine deca 99.9 7.5E-21 2.6E-25 233.0 23.8 330 168-529 115-561 (730)
69 2dr1_A PH1308 protein, 386AA l 99.9 2E-19 6.7E-24 205.1 34.1 336 150-529 7-374 (386)
70 3hl2_A O-phosphoseryl-tRNA(SEC 99.9 1.4E-19 4.8E-24 204.7 31.1 364 560-977 40-464 (501)
71 3lvm_A Cysteine desulfurase; s 99.9 3.4E-19 1.1E-23 206.2 34.6 293 205-529 62-394 (423)
72 3f0h_A Aminotransferase; RER07 99.9 9.2E-20 3.1E-24 207.4 29.2 324 171-529 23-369 (376)
73 2bkw_A Alanine-glyoxylate amin 99.9 2.3E-20 8E-25 212.7 24.1 316 632-974 38-384 (385)
74 1eg5_A Aminotransferase; PLP-d 99.9 4.2E-19 1.4E-23 202.1 34.3 289 207-529 40-371 (384)
75 3ffh_A Histidinol-phosphate am 99.9 5.7E-20 2E-24 208.3 26.8 284 634-970 69-362 (363)
76 2w8t_A SPT, serine palmitoyltr 99.9 3.4E-20 1.2E-24 215.6 25.5 300 629-978 106-419 (427)
77 1rv3_A Serine hydroxymethyltra 99.9 1.6E-20 5.6E-25 221.8 22.8 314 628-973 86-430 (483)
78 3ou5_A Serine hydroxymethyltra 99.8 2.5E-20 8.7E-25 209.7 22.0 306 636-971 104-438 (490)
79 1qz9_A Kynureninase; kynurenin 99.8 6E-20 2E-24 212.1 25.4 308 632-975 71-403 (416)
80 3qm2_A Phosphoserine aminotran 99.8 4.1E-20 1.4E-24 211.2 23.5 318 170-529 30-380 (386)
81 3ly1_A Putative histidinol-pho 99.8 1.7E-19 5.7E-24 203.7 28.1 286 634-973 53-351 (354)
82 3a9z_A Selenocysteine lyase; P 99.8 1.7E-19 5.7E-24 209.6 28.9 321 627-977 56-431 (432)
83 3ffr_A Phosphoserine aminotran 99.8 5.7E-21 2E-25 215.7 15.8 306 628-971 39-361 (362)
84 1j32_A Aspartate aminotransfer 99.8 4E-20 1.4E-24 211.6 22.9 303 628-974 67-387 (388)
85 4e1o_A HDC, histidine decarbox 99.8 7.8E-19 2.7E-23 207.4 34.3 359 139-529 49-473 (481)
86 2yrr_A Aminotransferase, class 99.8 1.2E-19 4E-24 204.0 26.0 318 171-529 4-348 (353)
87 2z9v_A Aspartate aminotransfer 99.8 1E-19 3.5E-24 208.3 25.8 297 209-529 40-366 (392)
88 2a7v_A Serine hydroxymethyltra 99.8 3E-20 1E-24 218.4 21.5 303 634-973 102-440 (490)
89 3tqx_A 2-amino-3-ketobutyrate 99.8 1.9E-20 6.5E-25 214.7 19.0 294 632-975 88-397 (399)
90 3k40_A Aromatic-L-amino-acid d 99.8 6.5E-19 2.2E-23 207.7 32.5 358 139-529 44-466 (475)
91 3vax_A Putative uncharacterize 99.8 2.9E-19 9.8E-24 205.1 27.8 292 205-529 57-395 (400)
92 3get_A Histidinol-phosphate am 99.8 4.3E-20 1.5E-24 209.5 20.4 280 636-971 69-364 (365)
93 3dzz_A Putative pyridoxal 5'-p 99.8 6.8E-20 2.3E-24 209.5 21.7 302 631-975 65-390 (391)
94 3ffr_A Phosphoserine aminotran 99.8 1.7E-19 5.8E-24 203.6 24.4 297 208-529 40-359 (362)
95 3euc_A Histidinol-phosphate am 99.8 8.1E-20 2.8E-24 207.4 21.6 284 634-972 69-366 (367)
96 2huf_A Alanine glyoxylate amin 99.8 6E-19 2E-23 201.9 27.1 319 178-529 28-378 (393)
97 3e77_A Phosphoserine aminotran 99.8 4.1E-20 1.4E-24 210.1 16.9 304 628-973 54-374 (377)
98 2fnu_A Aminotransferase; prote 99.8 1.2E-19 4.1E-24 206.2 20.7 309 634-975 34-373 (375)
99 3n0l_A Serine hydroxymethyltra 99.8 3.7E-19 1.3E-23 205.3 25.1 302 629-974 68-389 (417)
100 1b5p_A Protein (aspartate amin 99.8 3.7E-19 1.3E-23 203.7 24.8 299 628-971 68-382 (385)
101 3m5u_A Phosphoserine aminotran 99.8 4.8E-19 1.7E-23 200.5 25.3 314 171-529 9-355 (361)
102 1gd9_A Aspartate aminotransfer 99.8 2.1E-19 7.3E-24 205.6 22.5 302 628-975 63-387 (389)
103 4dq6_A Putative pyridoxal phos 99.8 2.6E-19 8.8E-24 204.7 23.1 296 631-971 70-390 (391)
104 1fc4_A 2-amino-3-ketobutyrate 99.8 8.5E-20 2.9E-24 209.8 18.8 293 632-975 90-398 (401)
105 3tfu_A Adenosylmethionine-8-am 99.8 2.8E-19 9.7E-24 209.7 23.5 299 633-975 119-454 (457)
106 1v2d_A Glutamine aminotransfer 99.8 1.4E-19 4.9E-24 206.6 20.4 292 635-976 64-373 (381)
107 2dou_A Probable N-succinyldiam 99.8 1.6E-19 5.4E-24 205.8 20.6 296 628-970 63-374 (376)
108 3kgw_A Alanine-glyoxylate amin 99.8 6.6E-19 2.3E-23 201.1 25.7 320 177-529 31-383 (393)
109 3nra_A Aspartate aminotransfer 99.8 1.3E-19 4.3E-24 208.6 19.8 303 628-975 78-406 (407)
110 1bs0_A Protein (8-amino-7-oxon 99.8 1.1E-19 3.8E-24 207.6 19.0 288 632-969 84-382 (384)
111 2qma_A Diaminobutyrate-pyruvat 99.8 4.3E-18 1.5E-22 201.9 33.3 359 140-529 72-491 (497)
112 3a2b_A Serine palmitoyltransfe 99.8 1.7E-19 5.8E-24 207.2 19.6 297 628-976 84-394 (398)
113 2bwn_A 5-aminolevulinate synth 99.8 5.1E-19 1.8E-23 203.4 23.6 293 633-973 92-399 (401)
114 2ch1_A 3-hydroxykynurenine tra 99.8 1.9E-18 6.5E-23 198.0 28.0 323 177-529 26-378 (396)
115 2gb3_A Aspartate aminotransfer 99.8 3.2E-19 1.1E-23 205.9 21.6 302 628-978 79-406 (409)
116 2cb1_A O-acetyl homoserine sul 99.8 2.9E-18 1E-22 198.4 29.6 297 212-529 57-411 (412)
117 2vi8_A Serine hydroxymethyltra 99.8 1.5E-19 5.2E-24 207.7 18.5 302 631-976 68-389 (405)
118 1v72_A Aldolase; PLP-dependent 99.8 2.3E-19 7.8E-24 202.2 19.1 290 633-974 44-353 (356)
119 3kki_A CAI-1 autoinducer synth 99.8 2.5E-19 8.6E-24 206.8 19.8 286 634-974 106-404 (409)
120 2z61_A Probable aspartate amin 99.8 5.3E-19 1.8E-23 201.0 21.7 289 628-972 66-369 (370)
121 1o4s_A Aspartate aminotransfer 99.8 4.9E-19 1.7E-23 203.0 21.4 293 628-972 78-387 (389)
122 2dkj_A Serine hydroxymethyltra 99.8 2.8E-19 9.7E-24 205.6 19.4 292 637-973 74-387 (407)
123 3ele_A Amino transferase; RER0 99.8 1.8E-18 6.1E-23 198.6 25.9 299 628-975 76-397 (398)
124 2o0r_A RV0858C (N-succinyldiam 99.8 3.6E-19 1.2E-23 205.6 20.0 304 628-976 62-398 (411)
125 3dr4_A Putative perosamine syn 99.8 3.3E-19 1.1E-23 204.4 19.3 301 634-970 58-389 (391)
126 1u08_A Hypothetical aminotrans 99.8 7.2E-19 2.5E-23 201.1 21.6 296 628-968 67-384 (386)
127 2oat_A Ornithine aminotransfer 99.8 4.6E-18 1.6E-22 198.4 28.5 291 634-973 120-438 (439)
128 1c4k_A Protein (ornithine deca 99.8 7.1E-19 2.4E-23 215.5 22.5 315 633-975 174-567 (730)
129 3hmu_A Aminotransferase, class 99.8 2.9E-18 9.8E-23 201.9 26.9 302 633-975 100-453 (472)
130 1yiz_A Kynurenine aminotransfe 99.8 6.8E-19 2.3E-23 204.4 21.2 304 628-972 77-427 (429)
131 1vjo_A Alanine--glyoxylate ami 99.8 6.4E-18 2.2E-22 193.5 28.9 313 178-528 43-389 (393)
132 3h14_A Aminotransferase, class 99.8 1.3E-18 4.4E-23 199.4 22.9 352 571-978 17-386 (391)
133 3qm2_A Phosphoserine aminotran 99.8 4.3E-20 1.5E-24 211.0 10.4 300 629-973 69-384 (386)
134 1svv_A Threonine aldolase; str 99.8 4.4E-19 1.5E-23 200.0 18.5 293 629-973 46-357 (359)
135 3dyd_A Tyrosine aminotransfera 99.8 1.5E-18 5E-23 201.8 23.3 300 635-975 99-425 (427)
136 3l8a_A METC, putative aminotra 99.8 1E-18 3.4E-23 202.7 21.8 299 631-972 99-420 (421)
137 3frk_A QDTB; aminotransferase, 99.8 7.1E-19 2.4E-23 200.3 19.7 295 634-973 38-367 (373)
138 3gbx_A Serine hydroxymethyltra 99.8 8E-19 2.7E-23 202.6 20.3 297 633-973 77-395 (420)
139 3g0t_A Putative aminotransfera 99.8 1E-18 3.4E-23 203.3 21.2 315 628-972 82-435 (437)
140 3cq5_A Histidinol-phosphate am 99.8 5.3E-18 1.8E-22 192.9 26.4 284 632-972 73-366 (369)
141 2pb2_A Acetylornithine/succiny 99.8 3.2E-18 1.1E-22 198.5 25.1 292 633-974 100-418 (420)
142 2c81_A Glutamine-2-deoxy-scyll 99.8 3.7E-19 1.3E-23 206.1 17.0 315 632-975 42-415 (418)
143 3p1t_A Putative histidinol-pho 99.8 3.5E-18 1.2E-22 191.2 24.4 276 634-971 53-334 (337)
144 4adb_A Succinylornithine trans 99.8 3.6E-18 1.2E-22 196.4 24.4 295 633-976 82-402 (406)
145 2oga_A Transaminase; PLP-depen 99.8 2.6E-18 8.8E-23 197.8 23.2 301 634-976 65-398 (399)
146 3h7f_A Serine hydroxymethyltra 99.8 3.9E-18 1.3E-22 199.5 25.1 297 633-974 91-414 (447)
147 2e7j_A SEP-tRNA:Cys-tRNA synth 99.8 1E-18 3.4E-23 198.3 19.4 280 208-529 50-365 (371)
148 1z7d_A Ornithine aminotransfer 99.8 7.1E-18 2.4E-22 196.4 27.1 294 633-976 108-431 (433)
149 3uwc_A Nucleotide-sugar aminot 99.8 6.5E-19 2.2E-23 200.3 17.8 297 634-974 40-371 (374)
150 2w8t_A SPT, serine palmitoyltr 99.8 7.4E-18 2.5E-22 195.8 27.0 277 206-529 104-410 (427)
151 3ezs_A Aminotransferase ASPB; 99.8 1.6E-18 5.6E-23 197.2 21.0 291 628-973 59-374 (376)
152 2c0r_A PSAT, phosphoserine ami 99.8 1.4E-18 4.7E-23 197.0 20.2 298 629-974 46-361 (362)
153 3ruy_A Ornithine aminotransfer 99.8 4.8E-18 1.6E-22 194.7 24.9 284 634-971 80-391 (392)
154 3hdo_A Histidinol-phosphate am 99.8 8.4E-19 2.9E-23 198.7 18.4 280 635-973 68-354 (360)
155 3nx3_A Acoat, acetylornithine 99.8 7E-18 2.4E-22 193.6 26.2 289 632-973 78-394 (395)
156 1xi9_A Putative transaminase; 99.8 9.7E-19 3.3E-23 201.7 19.0 303 628-974 78-403 (406)
157 2bkw_A Alanine-glyoxylate amin 99.8 6.6E-18 2.3E-22 192.4 25.5 291 212-529 39-379 (385)
158 2fq6_A Cystathionine beta-lyas 99.8 2E-17 6.8E-22 191.3 29.4 273 214-529 85-413 (415)
159 2x5d_A Probable aminotransfera 99.8 2.6E-18 8.8E-23 198.5 21.9 302 628-976 75-400 (412)
160 1pff_A Methionine gamma-lyase; 99.8 5E-18 1.7E-22 189.9 23.5 161 636-819 2-169 (331)
161 1fg7_A Histidinol phosphate am 99.8 5.2E-18 1.8E-22 192.2 23.8 278 635-969 61-353 (356)
162 3kax_A Aminotransferase, class 99.8 2.5E-18 8.5E-23 195.9 21.2 297 632-971 63-382 (383)
163 1m32_A 2-aminoethylphosphonate 99.8 5.5E-18 1.9E-22 191.3 23.8 319 171-529 8-360 (366)
164 3fvs_A Kynurenine--oxoglutarat 99.8 1.4E-18 4.9E-23 201.0 19.4 305 628-973 67-421 (422)
165 2x3l_A ORN/Lys/Arg decarboxyla 99.8 3.4E-19 1.2E-23 208.4 14.2 286 634-975 59-354 (446)
166 2o1b_A Aminotransferase, class 99.8 1.6E-18 5.5E-23 199.9 19.6 299 628-973 85-402 (404)
167 3op7_A Aminotransferase class 99.8 3.1E-18 1.1E-22 194.9 21.7 295 635-975 66-372 (375)
168 3jtx_A Aminotransferase; NP_28 99.8 3.6E-18 1.2E-22 195.7 22.0 294 628-971 66-395 (396)
169 3b46_A Aminotransferase BNA3; 99.8 1.4E-18 4.8E-23 203.2 18.3 301 628-969 95-442 (447)
170 3ecd_A Serine hydroxymethyltra 99.8 5.4E-18 1.8E-22 196.0 23.0 294 637-974 83-397 (425)
171 3ftb_A Histidinol-phosphate am 99.8 5.3E-18 1.8E-22 191.7 22.5 282 635-972 64-359 (361)
172 1mdo_A ARNB aminotransferase; 99.8 2.6E-18 8.7E-23 196.8 19.8 308 634-974 41-386 (393)
173 1b9h_A AHBA synthase, protein 99.8 3.1E-18 1E-22 196.0 20.2 305 634-973 40-387 (388)
174 3get_A Histidinol-phosphate am 99.8 4.5E-17 1.5E-21 184.6 29.6 298 172-529 36-362 (365)
175 2zyj_A Alpha-aminodipate amino 99.8 1.2E-18 4E-23 200.3 16.4 296 635-975 77-394 (397)
176 3tqx_A 2-amino-3-ketobutyrate 99.8 1.8E-17 6.3E-22 189.8 26.3 277 207-529 84-391 (399)
177 1pff_A Methionine gamma-lyase; 99.8 6.5E-18 2.2E-22 189.0 21.9 273 215-529 2-329 (331)
178 3a9z_A Selenocysteine lyase; P 99.8 2.8E-17 9.7E-22 190.8 28.1 294 205-529 55-423 (432)
179 2vyc_A Biodegradative arginine 99.8 3.8E-18 1.3E-22 210.9 21.7 305 633-975 206-606 (755)
180 3m5u_A Phosphoserine aminotran 99.8 8.1E-19 2.8E-23 198.7 14.2 297 628-973 46-359 (361)
181 3ffh_A Histidinol-phosphate am 99.8 1.6E-16 5.4E-21 179.9 33.0 298 171-528 37-360 (363)
182 3frk_A QDTB; aminotransferase, 99.8 2.1E-17 7E-22 188.2 25.7 280 211-530 36-364 (373)
183 1bw0_A TAT, protein (tyrosine 99.8 5.4E-18 1.8E-22 195.9 20.9 303 636-975 79-414 (416)
184 1gc0_A Methionine gamma-lyase; 99.8 5.4E-17 1.9E-21 186.8 29.2 276 211-528 65-395 (398)
185 3gju_A Putative aminotransfera 99.8 5.7E-17 1.9E-21 190.3 29.7 312 632-975 95-457 (460)
186 3i5t_A Aminotransferase; pyrid 99.8 1.3E-17 4.5E-22 196.5 24.0 312 632-976 97-456 (476)
187 1qgn_A Protein (cystathionine 99.8 6.4E-18 2.2E-22 196.9 21.0 209 632-889 114-331 (445)
188 2zc0_A Alanine glyoxylate tran 99.8 8.8E-18 3E-22 193.4 21.9 304 628-974 75-404 (407)
189 3qhx_A Cystathionine gamma-syn 99.8 6.5E-18 2.2E-22 194.2 20.6 277 633-960 67-386 (392)
190 1vp4_A Aminotransferase, putat 99.8 4.3E-18 1.5E-22 197.6 19.2 307 628-976 85-420 (425)
191 3n5m_A Adenosylmethionine-8-am 99.8 8.9E-17 3.1E-21 188.1 30.3 311 632-973 91-451 (452)
192 3qhx_A Cystathionine gamma-syn 99.8 2E-17 6.9E-22 190.1 24.3 274 212-528 67-392 (392)
193 3piu_A 1-aminocyclopropane-1-c 99.8 8.6E-18 2.9E-22 195.6 21.5 301 636-975 90-433 (435)
194 1c7n_A Cystalysin; transferase 99.8 3.9E-17 1.3E-21 187.5 26.6 303 632-977 70-396 (399)
195 1gc0_A Methionine gamma-lyase; 99.8 1.5E-17 5E-22 191.6 22.9 284 632-969 65-396 (398)
196 1e5e_A MGL, methionine gamma-l 99.8 3.2E-17 1.1E-21 189.2 25.6 161 633-817 63-230 (404)
197 2po3_A 4-dehydrase; external a 99.8 1.2E-17 4.3E-22 193.6 21.9 304 634-974 54-386 (424)
198 3fdb_A Beta C-S lyase, putativ 99.8 5.3E-18 1.8E-22 192.9 18.3 295 632-973 62-375 (377)
199 1o69_A Aminotransferase; struc 99.8 1.3E-17 4.4E-22 191.6 21.5 308 633-972 33-385 (394)
200 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.8 2.9E-17 1E-21 191.4 24.9 316 634-972 64-434 (437)
201 1jg8_A L-ALLO-threonine aldola 99.8 2.8E-18 9.7E-23 193.0 15.6 288 634-973 40-345 (347)
202 2x3l_A ORN/Lys/Arg decarboxyla 99.8 6.5E-18 2.2E-22 197.5 19.1 271 212-529 58-348 (446)
203 1fc4_A 2-amino-3-ketobutyrate 99.8 5.3E-17 1.8E-21 186.4 26.5 275 208-529 87-392 (401)
204 2cb1_A O-acetyl homoserine sul 99.8 2.8E-17 9.7E-22 190.1 24.3 294 634-968 58-410 (412)
205 1iay_A ACC synthase 2, 1-amino 99.8 1.2E-17 4.1E-22 193.9 21.2 306 629-974 84-427 (428)
206 3dxv_A Alpha-amino-epsilon-cap 99.8 4.3E-17 1.5E-21 189.9 25.4 301 632-975 86-426 (439)
207 2ord_A Acoat, acetylornithine 99.8 9.7E-17 3.3E-21 184.2 28.0 287 633-973 83-396 (397)
208 2eh6_A Acoat, acetylornithine 99.8 5.6E-17 1.9E-21 184.4 25.7 278 634-970 72-374 (375)
209 1s0a_A Adenosylmethionine-8-am 99.8 8.4E-17 2.9E-21 186.9 27.6 302 634-976 88-426 (429)
210 3dod_A Adenosylmethionine-8-am 99.8 7.2E-17 2.5E-21 188.7 27.1 315 632-977 87-446 (448)
211 2r2n_A Kynurenine/alpha-aminoa 99.8 3.5E-17 1.2E-21 189.9 24.2 305 627-973 77-423 (425)
212 4ao9_A Beta-phenylalanine amin 99.8 1E-17 3.4E-22 194.5 19.4 324 591-977 98-449 (454)
213 1qgn_A Protein (cystathionine 99.8 4.2E-17 1.4E-21 190.0 24.7 268 212-529 115-440 (445)
214 2rfv_A Methionine gamma-lyase; 99.8 1.6E-17 5.3E-22 191.2 20.7 163 632-817 64-231 (398)
215 3b8x_A WBDK, pyridoxamine 5-ph 99.8 1.2E-16 3.9E-21 183.2 27.8 306 634-967 36-389 (390)
216 3nyt_A Aminotransferase WBPE; 99.8 7.8E-18 2.7E-22 191.4 17.5 293 634-968 37-358 (367)
217 2bwn_A 5-aminolevulinate synth 99.8 8.1E-17 2.8E-21 185.0 26.2 275 210-529 90-395 (401)
218 3acz_A Methionine gamma-lyase; 99.8 1.6E-16 5.5E-21 182.3 28.6 274 212-528 60-387 (389)
219 2vyc_A Biodegradative arginine 99.8 1.7E-17 5.7E-22 205.2 21.6 280 211-529 205-600 (755)
220 3e2y_A Kynurenine-oxoglutarate 99.8 5.3E-18 1.8E-22 195.3 15.9 297 629-968 62-407 (410)
221 1cs1_A CGS, protein (cystathio 99.8 6.8E-17 2.3E-21 185.0 24.8 281 634-970 54-383 (386)
222 1cs1_A CGS, protein (cystathio 99.7 8.5E-17 2.9E-21 184.2 25.6 274 213-529 54-382 (386)
223 3ez1_A Aminotransferase MOCR f 99.7 9.4E-17 3.2E-21 186.0 26.1 300 635-975 73-416 (423)
224 3aow_A Putative uncharacterize 99.7 3.4E-17 1.2E-21 191.6 22.5 305 628-974 118-445 (448)
225 3bc8_A O-phosphoseryl-tRNA(SEC 99.7 1.5E-16 5.1E-21 182.9 27.2 342 140-529 22-438 (450)
226 3i16_A Aluminum resistance pro 99.7 1.7E-17 5.9E-22 191.9 19.5 284 108-470 4-323 (427)
227 2x5f_A Aspartate_tyrosine_phen 99.7 3.2E-17 1.1E-21 190.4 21.8 298 636-974 92-429 (430)
228 2c0r_A PSAT, phosphoserine ami 99.7 1.9E-16 6.5E-21 179.3 27.5 316 170-529 7-356 (362)
229 1w23_A Phosphoserine aminotran 99.7 7.3E-18 2.5E-22 190.5 15.7 306 628-972 44-358 (360)
230 4e3q_A Pyruvate transaminase; 99.7 5.5E-17 1.9E-21 189.8 23.5 341 592-974 79-468 (473)
231 1d2f_A MALY protein; aminotran 99.7 1E-16 3.6E-21 183.4 25.4 300 633-974 69-389 (390)
232 3i16_A Aluminum resistance pro 99.7 2.4E-17 8.3E-22 190.6 20.0 260 634-933 75-358 (427)
233 1vef_A Acetylornithine/acetyl- 99.7 1.1E-16 3.6E-21 183.7 25.0 280 633-971 88-394 (395)
234 4atq_A 4-aminobutyrate transam 99.7 1.3E-16 4.4E-21 185.9 25.9 294 635-973 110-454 (456)
235 4a6r_A Omega transaminase; tra 99.7 1.6E-16 5.5E-21 186.4 26.9 302 632-975 94-450 (459)
236 3acz_A Methionine gamma-lyase; 99.7 5.8E-17 2E-21 186.0 22.6 273 634-960 61-381 (389)
237 3rq1_A Aminotransferase class 99.7 2.9E-17 1E-21 189.9 20.2 301 628-975 80-416 (418)
238 3ju7_A Putative PLP-dependent 99.7 4.5E-17 1.5E-21 186.1 21.4 301 634-973 38-374 (377)
239 1lc5_A COBD, L-threonine-O-3-p 99.7 3.7E-17 1.3E-21 185.4 20.6 285 635-974 62-360 (364)
240 3uwc_A Nucleotide-sugar aminot 99.7 2.3E-16 8E-21 179.2 26.8 279 212-529 39-366 (374)
241 3ly1_A Putative histidinol-pho 99.7 6.7E-16 2.3E-20 174.0 30.4 298 172-529 22-347 (354)
242 2rfv_A Methionine gamma-lyase; 99.7 2.8E-16 9.7E-21 180.7 27.1 277 211-529 64-395 (398)
243 1svv_A Threonine aldolase; str 99.7 9.1E-17 3.1E-21 180.9 22.2 297 179-529 25-353 (359)
244 2fq6_A Cystathionine beta-lyas 99.7 4.1E-17 1.4E-21 188.7 19.7 211 633-889 83-300 (415)
245 3hdo_A Histidinol-phosphate am 99.7 8.1E-16 2.8E-20 174.1 30.1 266 214-529 68-350 (360)
246 3kki_A CAI-1 autoinducer synth 99.7 4.4E-17 1.5E-21 187.9 19.9 274 207-529 100-399 (409)
247 3jzl_A Putative cystathionine 99.7 5.5E-17 1.9E-21 186.9 20.4 258 634-933 61-341 (409)
248 1v2d_A Glutamine aminotransfer 99.7 6.1E-16 2.1E-20 176.4 28.9 271 214-529 64-366 (381)
249 2cjg_A L-lysine-epsilon aminot 99.7 1.3E-16 4.4E-21 186.7 23.8 299 633-974 102-448 (449)
250 3if2_A Aminotransferase; YP_26 99.7 2.5E-17 8.5E-22 192.1 17.1 307 628-976 83-442 (444)
251 2fnu_A Aminotransferase; prote 99.7 2.8E-16 9.5E-21 178.4 25.4 280 212-529 33-367 (375)
252 3ppl_A Aspartate aminotransfer 99.7 1.2E-16 4E-21 185.6 22.4 302 635-975 81-421 (427)
253 3a2b_A Serine palmitoyltransfe 99.7 4.2E-16 1.4E-20 178.9 26.8 275 207-529 84-387 (398)
254 3l44_A Glutamate-1-semialdehyd 99.7 8.9E-17 3E-21 187.0 21.4 290 634-976 97-432 (434)
255 2z61_A Probable aspartate amin 99.7 5.9E-16 2E-20 175.8 27.7 270 215-529 70-366 (370)
256 3euc_A Histidinol-phosphate am 99.7 3.7E-16 1.3E-20 177.1 26.0 266 214-529 70-363 (367)
257 1n8p_A Cystathionine gamma-lya 99.7 3.3E-16 1.1E-20 180.1 25.3 270 212-528 56-389 (393)
258 1j32_A Aspartate aminotransfer 99.7 1.4E-15 4.9E-20 173.7 30.5 325 153-529 18-382 (388)
259 4ffc_A 4-aminobutyrate aminotr 99.7 5.4E-16 1.8E-20 181.6 27.0 296 632-975 107-450 (453)
260 1bs0_A Protein (8-amino-7-oxon 99.7 3.5E-16 1.2E-20 178.5 24.7 273 211-528 84-381 (384)
261 3oks_A 4-aminobutyrate transam 99.7 2.3E-16 8E-21 184.6 23.5 298 632-972 104-449 (451)
262 3fq8_A Glutamate-1-semialdehyd 99.7 1.8E-16 6.3E-21 183.9 22.2 291 633-973 93-426 (427)
263 2ctz_A O-acetyl-L-homoserine s 99.7 2.7E-16 9.3E-21 182.4 23.5 295 212-527 59-420 (421)
264 1w23_A Phosphoserine aminotran 99.7 7E-16 2.4E-20 174.1 26.3 320 171-529 7-355 (360)
265 3dr4_A Putative perosamine syn 99.7 3.3E-16 1.1E-20 179.4 23.8 278 212-529 57-388 (391)
266 3cog_A Cystathionine gamma-lya 99.7 1.5E-16 5.3E-21 183.4 21.1 162 634-819 69-237 (403)
267 1e5e_A MGL, methionine gamma-l 99.7 1.8E-15 6E-20 174.6 29.8 272 212-529 63-390 (404)
268 2gb3_A Aspartate aminotransfer 99.7 2.4E-15 8.3E-20 173.4 30.9 319 153-529 31-397 (409)
269 3p1t_A Putative histidinol-pho 99.7 7.2E-15 2.5E-19 164.2 33.0 295 171-529 21-332 (337)
270 4e77_A Glutamate-1-semialdehyd 99.7 3.3E-16 1.1E-20 182.0 22.8 290 634-973 95-428 (429)
271 3g0t_A Putative aminotransfera 99.7 2.4E-15 8.3E-20 174.6 30.0 325 171-529 49-432 (437)
272 3cog_A Cystathionine gamma-lya 99.7 9.1E-16 3.1E-20 176.9 26.2 273 213-529 69-397 (403)
273 3k28_A Glutamate-1-semialdehyd 99.7 1.8E-16 6.1E-21 184.2 20.2 288 634-975 95-428 (429)
274 1mdo_A ARNB aminotransferase; 99.7 4.4E-16 1.5E-20 178.2 22.7 285 212-529 40-381 (393)
275 1sff_A 4-aminobutyrate aminotr 99.7 1.2E-15 4E-20 176.7 26.5 300 634-975 86-425 (426)
276 3dzz_A Putative pyridoxal 5'-p 99.7 3.8E-15 1.3E-19 170.0 30.1 275 212-529 67-384 (391)
277 3lws_A Aromatic amino acid bet 99.7 1.1E-16 3.8E-21 180.8 16.9 287 634-970 49-355 (357)
278 3qgu_A LL-diaminopimelate amin 99.7 1.9E-16 6.4E-21 185.0 19.3 296 635-975 114-441 (449)
279 3i4j_A Aminotransferase, class 99.7 6.8E-16 2.3E-20 179.3 23.7 312 632-974 72-428 (430)
280 3d6k_A Putative aminotransfera 99.7 3.1E-16 1.1E-20 181.8 20.7 300 635-974 79-418 (422)
281 2eh6_A Acoat, acetylornithine 99.7 1.7E-15 5.9E-20 172.1 26.5 271 213-528 72-372 (375)
282 3ri6_A O-acetylhomoserine sulf 99.7 5.1E-16 1.8E-20 180.2 22.4 293 213-527 84-429 (430)
283 2fyf_A PSAT, phosphoserine ami 99.7 2.5E-16 8.6E-21 181.0 19.7 301 630-973 76-397 (398)
284 3a8u_X Omega-amino acid--pyruv 99.7 1.2E-15 4.1E-20 178.3 25.5 312 632-974 93-447 (449)
285 3n75_A LDC, lysine decarboxyla 99.7 1.1E-15 3.6E-20 186.0 25.7 301 634-974 197-560 (715)
286 3ndn_A O-succinylhomoserine su 99.7 2.4E-16 8.3E-21 182.3 18.8 212 633-890 82-299 (414)
287 1n8p_A Cystathionine gamma-lya 99.7 1.1E-16 3.8E-21 183.9 15.9 158 633-818 56-226 (393)
288 3ndn_A O-succinylhomoserine su 99.7 1.1E-15 3.9E-20 176.7 24.3 271 214-527 84-413 (414)
289 1u08_A Hypothetical aminotrans 99.7 6.9E-15 2.3E-19 168.0 30.5 268 216-529 72-385 (386)
290 2eo5_A 419AA long hypothetical 99.7 3.3E-15 1.1E-19 173.0 27.9 285 634-974 88-418 (419)
291 3t18_A Aminotransferase class 99.7 2.5E-16 8.5E-21 181.8 18.3 298 628-975 79-411 (413)
292 1lc5_A COBD, L-threonine-O-3-p 99.7 7E-15 2.4E-19 166.6 29.8 264 214-529 62-355 (364)
293 3hl2_A O-phosphoseryl-tRNA(SEC 99.7 1.8E-14 6.1E-19 163.2 32.5 339 140-529 40-456 (501)
294 3nyt_A Aminotransferase WBPE; 99.7 1.4E-15 4.6E-20 172.9 23.7 277 213-530 37-360 (367)
295 3hvy_A Cystathionine beta-lyas 99.7 4.6E-16 1.6E-20 179.9 20.1 259 634-931 76-356 (427)
296 3b8x_A WBDK, pyridoxamine 5-ph 99.7 5.4E-15 1.9E-19 169.3 28.3 296 212-528 35-390 (390)
297 4dq6_A Putative pyridoxal phos 99.7 7.1E-15 2.4E-19 167.7 29.3 275 211-529 71-388 (391)
298 3jzl_A Putative cystathionine 99.7 8.6E-16 2.9E-20 177.0 21.6 220 213-470 61-306 (409)
299 2ctz_A O-acetyl-L-homoserine s 99.7 4.2E-15 1.4E-19 172.4 27.3 145 633-797 59-210 (421)
300 3cq5_A Histidinol-phosphate am 99.7 6.7E-15 2.3E-19 167.2 28.2 265 215-529 73-363 (369)
301 3ht4_A Aluminum resistance pro 99.7 4.6E-16 1.6E-20 180.6 18.5 255 634-931 67-345 (431)
302 1o4s_A Aspartate aminotransfer 99.7 9E-15 3.1E-19 167.5 28.9 267 215-529 82-384 (389)
303 3f6t_A Aspartate aminotransfer 99.7 7.6E-16 2.6E-20 184.0 20.7 326 628-975 138-526 (533)
304 1fg7_A Histidinol phosphate am 99.7 1.5E-14 5.1E-19 163.7 30.3 265 214-529 61-353 (356)
305 2dou_A Probable N-succinyldiam 99.7 2.6E-14 8.9E-19 162.6 32.3 320 153-529 13-373 (376)
306 3nra_A Aspartate aminotransfer 99.7 1E-15 3.5E-20 175.8 20.5 277 207-529 78-400 (407)
307 3ftb_A Histidinol-phosphate am 99.7 8.6E-15 2.9E-19 165.3 27.3 262 214-529 64-356 (361)
308 3n75_A LDC, lysine decarboxyla 99.7 8.3E-16 2.8E-20 186.9 20.1 273 211-529 195-555 (715)
309 2oga_A Transaminase; PLP-depen 99.7 6.2E-15 2.1E-19 169.5 26.5 279 212-529 64-391 (399)
310 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.7 5.4E-15 1.8E-19 172.2 26.2 298 212-529 63-431 (437)
311 1rv3_A Serine hydroxymethyltra 99.7 3E-16 1E-20 185.3 15.7 292 209-529 88-426 (483)
312 2o0r_A RV0858C (N-succinyldiam 99.7 1.7E-14 5.7E-19 166.4 30.0 269 216-529 67-391 (411)
313 3ei9_A LL-diaminopimelate amin 99.7 2.3E-16 7.9E-21 183.3 14.3 293 636-973 102-427 (432)
314 4f4e_A Aromatic-amino-acid ami 99.7 6.4E-16 2.2E-20 178.9 17.6 273 652-971 121-419 (420)
315 1yiz_A Kynurenine aminotransfe 99.7 2.4E-14 8.2E-19 166.0 30.5 267 216-529 82-424 (429)
316 1ibj_A CBL, cystathionine beta 99.7 5.8E-16 2E-20 181.6 16.8 163 633-819 134-302 (464)
317 2fyf_A PSAT, phosphoserine ami 99.7 5.8E-15 2E-19 169.6 24.9 293 210-529 77-393 (398)
318 2ez2_A Beta-tyrosinase, tyrosi 99.7 1.1E-15 3.9E-20 178.7 19.3 299 634-975 77-432 (456)
319 1ax4_A Tryptophanase; tryptoph 99.7 2.3E-15 7.7E-20 176.7 21.8 305 634-976 78-443 (467)
320 3g7q_A Valine-pyruvate aminotr 99.7 9.1E-16 3.1E-20 177.0 18.0 301 628-975 75-414 (417)
321 3ri6_A O-acetylhomoserine sulf 99.7 4E-15 1.4E-19 172.7 23.4 143 634-796 84-231 (430)
322 1uu1_A Histidinol-phosphate am 99.7 5.6E-16 1.9E-20 173.7 15.6 267 635-969 59-333 (335)
323 2aeu_A Hypothetical protein MJ 99.7 1.1E-15 3.7E-20 174.4 18.0 283 635-976 61-373 (374)
324 2po3_A 4-dehydrase; external a 99.7 1.7E-14 6E-19 167.1 28.1 277 212-529 53-381 (424)
325 3tcm_A Alanine aminotransferas 99.7 2.5E-15 8.5E-20 178.2 21.4 315 627-975 133-495 (500)
326 2vi8_A Serine hydroxymethyltra 99.7 1.7E-15 5.9E-20 173.8 19.5 274 215-529 73-382 (405)
327 1b5p_A Protein (aspartate amin 99.7 5.2E-14 1.8E-18 160.9 31.6 321 152-529 18-380 (385)
328 3fkd_A L-threonine-O-3-phospha 99.7 2E-15 7E-20 170.0 19.3 278 636-975 54-343 (350)
329 1zod_A DGD, 2,2-dialkylglycine 99.7 1.6E-14 5.5E-19 167.7 27.5 303 633-974 86-432 (433)
330 1b9h_A AHBA synthase, protein 99.6 1.3E-14 4.3E-19 165.9 25.7 281 212-529 39-383 (388)
331 3ezs_A Aminotransferase ASPB; 99.6 2.8E-14 9.6E-19 162.1 28.4 302 173-529 30-370 (376)
332 1v72_A Aldolase; PLP-dependent 99.6 2.1E-14 7.3E-19 161.4 26.8 273 211-529 43-348 (356)
333 3dyd_A Tyrosine aminotransfera 99.6 2.1E-14 7.1E-19 166.7 27.1 272 214-529 99-419 (427)
334 3kax_A Aminotransferase, class 99.6 2.1E-14 7.2E-19 163.3 26.7 272 213-529 65-380 (383)
335 2dkj_A Serine hydroxymethyltra 99.6 1.7E-15 5.9E-20 173.9 17.8 271 216-529 74-383 (407)
336 3b46_A Aminotransferase BNA3; 99.6 3.3E-14 1.1E-18 166.1 28.9 304 172-529 63-442 (447)
337 1uu1_A Histidinol-phosphate am 99.6 5.1E-14 1.7E-18 157.7 29.3 292 171-529 24-333 (335)
338 1xi9_A Putative transaminase; 99.6 2.1E-14 7.1E-19 165.3 26.8 268 216-529 83-398 (406)
339 3op7_A Aminotransferase class 99.6 1.7E-14 5.8E-19 163.9 25.7 271 215-529 67-366 (375)
340 3pj0_A LMO0305 protein; struct 99.6 6.7E-16 2.3E-20 174.4 13.9 288 634-969 50-357 (359)
341 3nmy_A Xometc, cystathionine g 99.6 6.1E-15 2.1E-19 169.7 22.0 272 213-528 69-397 (400)
342 2yky_A Beta-transaminase; tran 99.4 1.5E-17 5E-22 194.4 0.0 340 570-976 96-462 (465)
343 1gd9_A Aspartate aminotransfer 99.6 1E-14 3.6E-19 166.6 23.7 269 215-529 67-381 (389)
344 3n0l_A Serine hydroxymethyltra 99.6 7.7E-15 2.6E-19 169.1 22.7 274 214-529 74-384 (417)
345 3ruy_A Ornithine aminotransfer 99.6 1.1E-14 3.6E-19 166.8 23.7 276 212-529 79-389 (392)
346 3e2y_A Kynurenine-oxoglutarate 99.6 3.2E-14 1.1E-18 163.7 27.2 270 216-529 66-408 (410)
347 3ecd_A Serine hydroxymethyltra 99.6 1.5E-14 5.2E-19 166.9 24.6 273 216-529 83-392 (425)
348 1ibj_A CBL, cystathionine beta 99.6 5.5E-15 1.9E-19 173.3 20.9 161 213-383 135-302 (464)
349 1ajs_A Aspartate aminotransfer 99.6 2.7E-15 9.2E-20 173.0 18.0 291 635-974 77-411 (412)
350 2o1b_A Aminotransferase, class 99.6 1.9E-14 6.4E-19 165.8 24.7 269 215-529 89-398 (404)
351 2c81_A Glutamine-2-deoxy-scyll 99.6 2E-14 7E-19 166.1 25.0 292 208-529 39-409 (418)
352 3fkd_A L-threonine-O-3-phospha 99.6 1.7E-13 5.9E-18 154.2 32.0 296 173-529 22-337 (350)
353 3nmy_A Xometc, cystathionine g 99.6 1.1E-14 3.6E-19 167.7 22.3 209 634-889 69-285 (400)
354 3h14_A Aminotransferase, class 99.6 1.1E-13 3.6E-18 158.4 30.5 322 151-529 17-377 (391)
355 2x5d_A Probable aminotransfera 99.6 9.8E-14 3.4E-18 160.0 30.5 270 214-529 78-393 (412)
356 2ay1_A Aroat, aromatic amino a 99.6 6.9E-16 2.4E-20 176.7 11.9 288 636-970 73-392 (394)
357 3fsl_A Aromatic-amino-acid ami 99.6 2.5E-15 8.7E-20 172.0 16.6 274 652-970 99-396 (397)
358 3l8a_A METC, putative aminotra 99.6 3.4E-14 1.2E-18 164.5 26.2 313 166-529 62-417 (421)
359 1ohv_A 4-aminobutyrate aminotr 99.6 2.1E-14 7.2E-19 169.0 24.6 293 634-975 112-472 (472)
360 1o69_A Aminotransferase; struc 99.6 2.7E-14 9.2E-19 163.9 24.9 279 212-529 33-382 (394)
361 2epj_A Glutamate-1-semialdehyd 99.6 3.8E-14 1.3E-18 164.8 26.4 291 633-974 97-431 (434)
362 3fvs_A Kynurenine--oxoglutarat 99.6 6.1E-14 2.1E-18 162.0 28.1 268 218-529 78-417 (422)
363 3piu_A 1-aminocyclopropane-1-c 99.6 2.9E-14 1E-18 165.7 25.0 271 215-529 90-427 (435)
364 3fdb_A Beta C-S lyase, putativ 99.6 1.3E-14 4.3E-19 164.9 21.4 270 216-529 63-371 (377)
365 3gbx_A Serine hydroxymethyltra 99.6 5.4E-15 1.8E-19 170.4 18.3 275 213-529 78-391 (420)
366 2zyj_A Alpha-aminodipate amino 99.6 7.3E-15 2.5E-19 168.5 19.1 272 214-529 77-388 (397)
367 7aat_A Aspartate aminotransfer 99.6 2.3E-15 8E-20 172.8 14.9 270 654-971 102-400 (401)
368 1iay_A ACC synthase 2, 1-amino 99.6 2.8E-14 9.7E-19 165.4 24.2 268 215-529 87-422 (428)
369 1yaa_A Aspartate aminotransfer 99.6 3.4E-15 1.2E-19 172.2 16.1 269 654-973 104-410 (412)
370 3jtx_A Aminotransferase; NP_28 99.6 1.9E-13 6.4E-18 156.4 30.0 305 173-529 37-393 (396)
371 3ele_A Amino transferase; RER0 99.6 7E-14 2.4E-18 160.2 26.1 272 215-529 84-391 (398)
372 1bw0_A TAT, protein (tyrosine 99.6 6.2E-14 2.1E-18 161.7 25.8 275 215-529 79-408 (416)
373 3qgu_A LL-diaminopimelate amin 99.6 5.7E-14 1.9E-18 163.9 25.7 278 214-529 114-435 (449)
374 2a7v_A Serine hydroxymethyltra 99.6 2.1E-14 7.3E-19 168.6 21.8 285 215-529 104-436 (490)
375 3asa_A LL-diaminopimelate amin 99.6 4.6E-15 1.6E-19 170.5 15.9 295 635-974 78-393 (400)
376 2oqx_A Tryptophanase; lyase, p 99.6 7.8E-15 2.7E-19 172.1 17.9 304 634-975 76-443 (467)
377 1jg8_A L-ALLO-threonine aldola 99.6 2.8E-14 9.4E-19 160.3 21.4 272 213-529 40-341 (347)
378 1vef_A Acetylornithine/acetyl- 99.6 3.4E-14 1.2E-18 162.7 22.4 275 211-528 87-391 (395)
379 2zc0_A Alanine glyoxylate tran 99.6 5E-14 1.7E-18 161.9 23.6 271 215-529 79-399 (407)
380 3hvy_A Cystathionine beta-lyas 99.6 3E-14 1E-18 164.7 20.7 218 213-470 76-323 (427)
381 3b1d_A Betac-S lyase; HET: PLP 99.4 1E-16 3.4E-21 183.8 0.0 299 632-972 70-391 (392)
382 4eu1_A Mitochondrial aspartate 99.6 1.5E-14 5.2E-19 166.6 18.0 287 636-971 83-408 (409)
383 3ihj_A Alanine aminotransferas 99.6 2.3E-14 7.7E-19 169.8 19.7 314 628-975 129-494 (498)
384 2q7w_A Aspartate aminotransfer 99.6 6.1E-15 2.1E-19 168.8 14.2 284 636-970 73-395 (396)
385 3meb_A Aspartate aminotransfer 99.6 2.6E-14 9E-19 167.0 19.6 292 635-974 97-444 (448)
386 4adb_A Succinylornithine trans 99.6 2.4E-13 8.2E-18 156.0 26.8 276 212-529 82-395 (406)
387 2cy8_A D-phgat, D-phenylglycin 99.6 1.9E-13 6.4E-18 159.9 26.3 296 632-978 97-439 (453)
388 3ei9_A LL-diaminopimelate amin 99.6 1.1E-13 3.7E-18 160.7 23.6 316 171-530 61-424 (432)
389 1vp4_A Aminotransferase, putat 99.6 7.6E-14 2.6E-18 161.8 21.9 271 215-529 89-413 (425)
390 1c7n_A Cystalysin; transferase 99.6 3.6E-13 1.2E-17 154.3 27.2 271 215-529 70-388 (399)
391 4a0g_A Adenosylmethionine-8-am 99.6 2E-14 6.7E-19 179.0 17.4 340 592-975 392-829 (831)
392 3aow_A Putative uncharacterize 99.6 2.1E-13 7.2E-18 159.3 25.3 269 215-529 122-440 (448)
393 1d2f_A MALY protein; aminotran 99.6 7.8E-13 2.7E-17 151.1 28.1 270 216-529 69-384 (390)
394 2e7u_A Glutamate-1-semialdehyd 99.5 4.4E-13 1.5E-17 155.2 25.7 287 633-970 93-423 (424)
395 3ez1_A Aminotransferase MOCR f 99.5 6.1E-13 2.1E-17 153.8 26.3 329 149-529 10-410 (423)
396 3ju7_A Putative PLP-dependent 99.5 9.9E-14 3.4E-18 158.4 19.0 278 213-530 38-371 (377)
397 2x5f_A Aspartate_tyrosine_phen 99.5 4.1E-13 1.4E-17 155.7 24.2 276 215-529 92-424 (430)
398 3asa_A LL-diaminopimelate amin 99.5 1.7E-12 5.9E-17 149.0 28.2 330 151-530 17-389 (400)
399 3nx3_A Acoat, acetylornithine 99.5 4.3E-12 1.5E-16 145.3 30.8 277 212-529 79-390 (395)
400 2ord_A Acoat, acetylornithine 99.5 2.8E-13 9.4E-18 155.3 20.4 272 212-529 83-392 (397)
401 3bwn_A AT1G70560, L-tryptophan 99.5 2.2E-14 7.7E-19 164.5 10.2 278 636-972 72-385 (391)
402 2aeu_A Hypothetical protein MJ 99.5 5.5E-13 1.9E-17 152.0 21.3 157 214-383 61-228 (374)
403 3ppl_A Aspartate aminotransfer 99.5 1.7E-12 5.7E-17 150.5 25.4 272 214-529 81-415 (427)
404 3h7f_A Serine hydroxymethyltra 99.5 7.6E-13 2.6E-17 154.6 22.6 275 212-529 91-409 (447)
405 3rq1_A Aminotransferase class 99.5 1.7E-12 5.7E-17 149.9 25.1 329 150-529 21-410 (418)
406 3g7q_A Valine-pyruvate aminotr 99.5 5.5E-12 1.9E-16 145.2 27.7 274 214-529 78-408 (417)
407 3ht4_A Aluminum resistance pro 99.5 9.9E-13 3.4E-17 152.6 20.5 220 213-470 67-312 (431)
408 3t18_A Aminotransferase class 99.5 3.6E-12 1.2E-16 146.9 24.1 326 150-528 20-408 (413)
409 2oat_A Ornithine aminotransfer 99.5 5.2E-12 1.8E-16 147.1 25.6 274 213-529 120-434 (439)
410 2r2n_A Kynurenine/alpha-aminoa 99.5 9.8E-12 3.3E-16 144.0 26.9 278 208-529 79-419 (425)
411 2pb2_A Acetylornithine/succiny 99.5 7.5E-12 2.6E-16 144.8 25.9 276 211-529 99-413 (420)
412 3lws_A Aromatic amino acid bet 99.4 3.9E-12 1.3E-16 143.3 21.8 304 168-528 12-353 (357)
413 1s0a_A Adenosylmethionine-8-am 99.4 1.2E-11 4.1E-16 143.3 26.4 279 214-529 89-419 (429)
414 2ez2_A Beta-tyrosinase, tyrosi 99.4 8E-12 2.7E-16 145.9 24.4 272 213-529 77-426 (456)
415 3if2_A Aminotransferase; YP_26 99.4 5.1E-12 1.8E-16 147.0 22.5 276 214-529 86-435 (444)
416 7aat_A Aspartate aminotransfer 99.4 3.2E-12 1.1E-16 146.6 20.3 276 214-529 74-398 (401)
417 2zy4_A L-aspartate beta-decarb 99.4 1.5E-12 5.1E-17 155.8 18.1 130 678-814 192-332 (546)
418 3tcm_A Alanine aminotransferas 99.4 4.8E-12 1.6E-16 150.0 22.1 280 207-529 134-489 (500)
419 1z7d_A Ornithine aminotransfer 99.4 1.6E-11 5.6E-16 142.6 25.6 275 212-529 108-424 (433)
420 2cjg_A L-lysine-epsilon aminot 99.4 1.9E-11 6.5E-16 142.8 24.4 278 213-529 103-443 (449)
421 3d6k_A Putative aminotransfera 99.4 1.9E-11 6.6E-16 141.4 23.7 325 150-529 18-413 (422)
422 3pj0_A LMO0305 protein; struct 99.4 7.3E-12 2.5E-16 141.1 19.2 305 169-528 16-356 (359)
423 3a8u_X Omega-amino acid--pyruv 99.4 1.6E-11 5.3E-16 143.3 22.6 288 212-529 94-442 (449)
424 1ajs_A Aspartate aminotransfer 99.4 1.2E-11 4E-16 142.4 19.8 273 214-529 77-406 (412)
425 1ax4_A Tryptophanase; tryptoph 99.4 4.8E-11 1.6E-15 139.7 24.9 276 213-530 78-437 (467)
426 3fsl_A Aromatic-amino-acid ami 99.4 5.2E-11 1.8E-15 136.1 24.0 274 215-528 74-394 (397)
427 1yaa_A Aspartate aminotransfer 99.3 1.4E-11 4.8E-16 141.8 18.0 270 214-529 76-406 (412)
428 3dxv_A Alpha-amino-epsilon-cap 99.3 5.3E-11 1.8E-15 138.3 22.9 277 211-529 86-420 (439)
429 3k7y_A Aspartate aminotransfer 99.3 1.3E-11 4.6E-16 142.0 17.0 299 627-973 71-404 (405)
430 1sff_A 4-aminobutyrate aminotr 99.3 2E-10 7E-15 132.5 26.2 276 212-529 85-419 (426)
431 4f4e_A Aromatic-amino-acid ami 99.3 7.9E-11 2.7E-15 136.1 22.7 271 215-529 96-417 (420)
432 3ihj_A Alanine aminotransferas 99.3 6.7E-11 2.3E-15 140.0 22.4 276 207-529 129-488 (498)
433 3tfu_A Adenosylmethionine-8-am 99.3 1.6E-10 5.3E-15 135.3 25.3 283 213-529 120-448 (457)
434 2ay1_A Aroat, aromatic amino a 99.3 5.1E-12 1.7E-16 144.4 12.3 272 215-529 73-391 (394)
435 1zod_A DGD, 2,2-dialkylglycine 99.3 9.4E-11 3.2E-15 135.9 23.0 278 213-529 87-427 (433)
436 3meb_A Aspartate aminotransfer 99.3 1.1E-10 3.8E-15 136.2 23.6 275 213-529 96-439 (448)
437 3i5t_A Aminotransferase; pyrid 99.3 5.9E-11 2E-15 139.6 21.4 285 212-529 98-449 (476)
438 2eo5_A 419AA long hypothetical 99.3 1.4E-10 4.8E-15 134.0 24.2 267 214-529 89-413 (419)
439 4ffc_A 4-aminobutyrate aminotr 99.3 5.5E-10 1.9E-14 130.5 28.6 275 213-529 109-444 (453)
440 4eu1_A Mitochondrial aspartate 99.3 1E-10 3.5E-15 134.5 21.9 274 215-528 83-405 (409)
441 3f6t_A Aspartate aminotransfer 99.3 1.9E-10 6.5E-15 137.2 24.5 283 229-529 165-520 (533)
442 3i4j_A Aminotransferase, class 99.3 2.8E-10 9.7E-15 131.7 24.5 282 213-529 74-423 (430)
443 3bwn_A AT1G70560, L-tryptophan 99.3 2.2E-10 7.5E-15 131.2 22.7 272 214-530 71-383 (391)
444 3n5m_A Adenosylmethionine-8-am 99.3 3.6E-10 1.2E-14 131.9 24.8 282 213-529 93-447 (452)
445 3dod_A Adenosylmethionine-8-am 99.3 6.9E-10 2.3E-14 129.4 26.7 282 213-529 89-438 (448)
446 3gju_A Putative aminotransfera 99.3 1.1E-09 3.7E-14 128.3 27.9 287 212-529 96-451 (460)
447 4a6r_A Omega transaminase; tra 99.2 6.5E-10 2.2E-14 130.1 25.2 280 213-529 96-444 (459)
448 3hmu_A Aminotransferase, class 99.2 8.1E-10 2.8E-14 129.8 25.9 280 213-529 101-447 (472)
449 3oks_A 4-aminobutyrate transam 99.2 2.8E-09 9.6E-14 124.4 30.1 275 213-529 106-446 (451)
450 2hox_A ALLIIN lyase 1; cystein 99.2 8.4E-12 2.9E-16 144.8 8.0 242 678-972 153-423 (427)
451 3b1d_A Betac-S lyase; HET: PLP 98.9 9.9E-13 3.4E-17 150.5 0.0 270 215-529 70-388 (392)
452 2q7w_A Aspartate aminotransfer 99.2 4.9E-11 1.7E-15 136.2 14.0 273 214-528 72-393 (396)
453 4e77_A Glutamate-1-semialdehyd 99.2 5.2E-10 1.8E-14 129.5 22.7 275 213-529 95-424 (429)
454 2cy8_A D-phgat, D-phenylglycin 99.2 1.3E-09 4.3E-14 127.3 25.8 272 214-529 100-430 (453)
455 3fq8_A Glutamate-1-semialdehyd 99.2 5E-10 1.7E-14 129.6 21.5 273 214-529 95-422 (427)
456 2oqx_A Tryptophanase; lyase, p 99.2 1.1E-10 3.6E-15 136.8 14.9 270 213-529 76-437 (467)
457 2epj_A Glutamate-1-semialdehyd 99.2 3E-10 1E-14 131.7 18.5 274 213-529 98-426 (434)
458 4h51_A Aspartate aminotransfer 99.2 4.1E-10 1.4E-14 129.9 19.2 260 678-975 135-418 (420)
459 3l44_A Glutamate-1-semialdehyd 99.2 1E-09 3.5E-14 127.3 21.3 274 214-529 98-425 (434)
460 3k28_A Glutamate-1-semialdehyd 99.1 1.1E-09 3.6E-14 127.0 20.6 269 214-529 96-422 (429)
461 2e7u_A Glutamate-1-semialdehyd 99.1 5.7E-10 1.9E-14 129.0 18.0 271 213-528 94-421 (424)
462 2hox_A ALLIIN lyase 1; cystein 99.1 2E-09 6.9E-14 124.7 21.7 268 214-529 103-420 (427)
463 4ao9_A Beta-phenylalanine amin 99.1 3.2E-09 1.1E-13 123.2 21.3 271 215-529 131-441 (454)
464 1ohv_A 4-aminobutyrate aminotr 99.1 3.4E-09 1.2E-13 124.5 20.7 267 218-529 117-466 (472)
465 3ou5_A Serine hydroxymethyltra 99.1 1.7E-09 5.7E-14 122.3 16.7 285 216-528 105-435 (490)
466 2zy4_A L-aspartate beta-decarb 99.0 3.7E-08 1.3E-12 117.6 25.0 288 228-529 165-517 (546)
467 2yky_A Beta-transaminase; tran 98.4 2.9E-10 9.9E-15 132.7 0.0 276 211-530 140-456 (465)
468 4atq_A 4-aminobutyrate transam 98.7 1.6E-06 5.5E-11 100.8 27.2 273 215-529 111-450 (456)
469 4e3q_A Pyruvate transaminase; 98.6 2.6E-06 9E-11 99.4 24.7 289 215-542 115-470 (473)
470 3k7y_A Aspartate aminotransfer 98.5 1E-05 3.5E-10 92.8 23.1 307 171-529 34-400 (405)
471 4h51_A Aspartate aminotransfer 98.4 1.5E-05 5.3E-10 91.6 20.7 312 171-529 49-412 (420)
472 4a0g_A Adenosylmethionine-8-am 98.2 5.5E-05 1.9E-09 94.2 22.2 285 212-529 425-823 (831)
473 3f0i_A Arsenate reductase; str 60.2 9.2 0.00032 35.0 4.8 50 104-159 40-90 (119)
474 3rdw_A Putative arsenate reduc 55.3 13 0.00043 34.2 4.9 50 104-159 41-91 (121)
475 1xrs_B D-lysine 5,6-aminomutas 32.2 68 0.0023 33.6 6.5 99 255-356 120-242 (262)
476 3bqs_A Uncharacterized protein 30.0 30 0.001 30.2 2.8 27 102-128 8-34 (93)
477 1s3c_A Arsenate reductase; ARS 27.6 68 0.0023 30.1 5.1 49 104-159 38-87 (141)
478 3mab_A Uncharacterized protein 26.1 39 0.0013 29.5 2.8 26 103-128 9-34 (93)
479 2yxb_A Coenzyme B12-dependent 24.8 90 0.0031 29.9 5.6 97 253-356 16-129 (161)
480 1x60_A Sporulation-specific N- 24.5 83 0.0028 25.9 4.6 45 485-529 23-68 (79)
481 1uta_A FTSN, MSGA, cell divisi 24.0 71 0.0024 26.6 4.1 45 485-529 23-68 (81)
482 3l78_A Regulatory protein SPX; 20.6 1.1E+02 0.0036 27.7 4.8 49 104-159 36-85 (120)
483 2aml_A SIS domain protein; 469 20.5 2.6E+02 0.0089 30.5 9.0 34 295-331 96-130 (373)
484 4dik_A Flavoprotein; TM0755, e 20.4 2.3E+02 0.0079 31.5 8.6 113 637-753 221-342 (410)
No 1
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=100.00 E-value=1.1e-60 Score=559.47 Aligned_cols=421 Identities=34% Similarity=0.526 Sum_probs=382.0
Q ss_pred ccCCCCCHHHHHHHHHHhCCCCHHHhhhhcCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCc-cceecCCCCCC
Q 001989 100 RRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQKLASMNKV-YKSFIGMGYYN 177 (985)
Q Consensus 100 ~~~~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~-~~~~lG~g~y~ 177 (985)
.+|||||++|+++||++||++|+||||++ ||+++ ++ +++|| +++||.+++++++.++++|.. +.+|+|.|+|+
T Consensus 1 ~~~~~~~~~~~~~ml~~~g~~~~~~~~~~-~p~~~~~~-~~~lp---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~ 75 (438)
T 1wyu_A 1 MDYTPHTEEEIREMLRRVGAASLEDLFAH-LPKEILSP-PIDLP---EPLPEWKVLEELRRLAAQNLPAHKAFLGGGVRS 75 (438)
T ss_dssp CCCCCCCHHHHHHHHHHHTCSSTGGGGTT-SCGGGSSC-CCCCC---CCCCHHHHHHHHHHHHHTSCCCTTCCCCSSCCC
T ss_pred CCCCCcCHHHHHHHHHHcCCCCHHHHHHh-CcHHHhcC-CCCCC---CCCCHHHHHHHHHHHHhcCcCccccccCCCccC
Confidence 48999999999999999999999999987 99999 77 88887 789999999999999999986 88899999999
Q ss_pred CCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCE
Q 001989 178 THVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKT 257 (985)
Q Consensus 178 ~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~ 257 (985)
+..|+.+ ++++++++|++.|+||||+++||.++.+.++++++|+++|++++++++++|+|+++|+++++.++. +||+
T Consensus 76 ~~~p~~v-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~~--~gd~ 152 (438)
T 1wyu_A 76 HHVPPVV-QALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRET--GRMG 152 (438)
T ss_dssp CCCCHHH-HHHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHH--TCCE
T ss_pred CcCcHHH-HHHHhcchhhhcCCCCcchhhhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhcC--CCCE
Confidence 9999999 478888899999999999999999999999999999999999888899999999999998886655 7899
Q ss_pred EEEcCCCChhHHHHHHHhhcCCCeEEEEeCchh----hhccCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEe
Q 001989 258 FIIASNCHPQTIDICITRADGFDIKVVVSDLKD----IDYKSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMAT 333 (985)
Q Consensus 258 Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~----l~~l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a 333 (985)
||+++..|+++..+|+.+++..|++++.++.++ +++++++|++|++++||++|.+.|+++|+++||++|++++|++
T Consensus 153 Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~~~~~d~~~i~~~t~~v~i~~pn~tG~~~~l~~i~~la~~~g~~vivd~ 232 (438)
T 1wyu_A 153 VLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRTPLPEVGEEVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVA 232 (438)
T ss_dssp EEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBCCCCCCCTTEEEEEEESSCTTSBCCCHHHHHHHHHHTTCEEEEEC
T ss_pred EEEcCccCHhHHHHHHHHHHHCCCEEEEEcCcCCccCHHHhCCCeEEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEe
Confidence 999999999999999888777899999998643 2225678999999999999999999999999999999999877
Q ss_pred cCccccCCCCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccc
Q 001989 334 DLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR 413 (985)
Q Consensus 334 ~~~~lg~l~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irr 413 (985)
+..++|.+..++++|+|++++++|+|+.|+++|||++|++++++++++++|++++|++.|.+|.++|.+++|+|++++||
T Consensus 233 d~~a~g~~~~~~~~g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~ 312 (438)
T 1wyu_A 233 DPLSLGVLKPPGAYGADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRR 312 (438)
T ss_dssp CTTGGGTBCCHHHHTCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHG
T ss_pred chhhccCcCCCccCCCCEEEECCcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccch
Confidence 76678877777899999999999999999999999999999999999999999999988877878899999999999999
Q ss_pred cccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC-CCeEEcCC-CCcceEEEecCC-HHHHHH
Q 001989 414 DKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL-GTVEVQGL-PFFDTVKVKCAD-AHAIAS 490 (985)
Q Consensus 414 e~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~-g~~~~~~~-~~~~~~~~~~~~-~~~v~~ 490 (985)
+++|+|+|+++.+.++.+++|+.+++++|++++.++..+++++++++|+++ | +++..+ +++..+.+..+. ..++.+
T Consensus 313 ~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (438)
T 1wyu_A 313 AKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPG-VRPFTPKPFFNEFALALPKDPEAVRR 391 (438)
T ss_dssp GGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-CEECSCSSBCSEEEEECSSCHHHHHH
T ss_pred hcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCC-eEECCCCCeEEEEEEeCCCCHHHHHH
Confidence 999999999999999988888899999999999999999999999999998 6 998854 567777777654 889999
Q ss_pred HHHHcCcee--eee---cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 491 AAYKIEMNL--RVV---DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 491 ~L~~~GI~~--~~~---~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+|.++||.+ +.. .++.+|+|+++++|++|+|+++++|++
T Consensus 392 ~L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~ 435 (438)
T 1wyu_A 392 ALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKE 435 (438)
T ss_dssp HHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HHHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHH
Confidence 999999988 322 257899999999999999999999863
No 2
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=100.00 E-value=9.9e-42 Score=402.93 Aligned_cols=405 Identities=39% Similarity=0.711 Sum_probs=320.9
Q ss_pred cCCCCccCCCCCCCCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhh
Q 001989 547 AIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQ 626 (985)
Q Consensus 547 ~ip~~~~~~~~~~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~ 626 (985)
.||++++|++++ .+| ++||.|+++++.+++++|...+.++++||+|+++.++........+ +.+|+||++.+.
T Consensus 29 ~~p~~~~~~~~~-~lp----~~~e~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~p~v~~~~~~~--~~~~~~~~~~~~ 101 (474)
T 1wyu_B 29 LIPKEHLREVPP-RLP----EVDELTLVRHYTGLSRRQVGVDTTFYPLGSCTMKYNPKLHEEAARL--FADLHPYQDPRT 101 (474)
T ss_dssp HSCGGGBCSSCC-CCC----CCCHHHHHHHHHHHHTTCCCTTTSCCCBTTTCCCCCCHHHHHHHHT--TSSCCTTSCGGG
T ss_pred cCCHHHhccCCC-CCC----CCCHHHHHHHHHHHHhCCCCcccCccccccccccCCHHHHHHHHHH--HHhcCCCCchhh
Confidence 499999999886 787 6999999999999999998877788999988888776542222222 666899998448
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCC-CCCCEEEEcCCCCcccHHHHHHCCcEEE
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGD-HHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~-~~~~~IIv~~~~Hg~~~~~a~~~G~~vv 705 (985)
++|..++++++++++++++|++...+++++|++|+++++++++.+...+|. .++++||+++++|+++...++..|++++
T Consensus 102 ~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv 181 (474)
T 1wyu_B 102 AQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVR 181 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEE
T ss_pred ChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEE
Confidence 999999999999999999999876667789999998888888876544553 3456999999999999999999999999
Q ss_pred EEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCcccc-ccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCC
Q 001989 706 SVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVY-EEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGA 784 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i-~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~ 784 (985)
.+|++++|.+|+++|+++|+ ++|++|++++||++|.+ + |+++|+++||++|+++|+|++|..+..+..+++.+|+
T Consensus 182 ~v~~~~~~~~d~~~L~~~i~---~~t~~v~~~~pn~~G~~~~-~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~ 257 (474)
T 1wyu_B 182 EIPSGPEGEVDLEALKRELG---PHVAALMLTNPNTLGLFER-RILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGF 257 (474)
T ss_dssp EECBCTTSSBCHHHHHHHCS---TTEEEEEECSSCTTSCCCT-THHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTC
T ss_pred EecCCCCCCcCHHHHHHhhC---CCceEEEEECCCCCcccCC-CHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCC
Confidence 99998889999999999997 78999999999999998 5 8999999999999999999999655443446777899
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC--CCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI--PAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~--~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
|++++|+||+|++|+|+||||+|++++++++.+.+++.+++..+.. ....++....... +++++.+.+.++|+++..
T Consensus 258 di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~aa~~~l~~ 336 (474)
T 1wyu_B 258 DVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVR-SFYGNFLALVRAWAYIRT 336 (474)
T ss_dssp SEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSS-STTSCHHHHHHHHHHHHH
T ss_pred cEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccc-cCcCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988888874433210000 0000000000000 112244566778899998
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC-
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP- 940 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p- 940 (985)
+|.+++++..++..++++++.++|++ ++++.+. ...++.+++++. .+.+..+++++|.++||+++...+|
T Consensus 337 ~g~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~---~~~~~~~~~~~~-----~~~~~~~l~~~L~~~Gi~~~~~~~~~ 408 (474)
T 1wyu_B 337 LGLEGLKKAAALAVLNARYLKELLKEKGYRVPYD---GPSMHEFVAQPP-----EGFRALDLAKGLLELGFHPPTVYFPL 408 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSC---SSCCSCEEEBCS-----TTCCHHHHHHHHHHTTCCCCEESCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcEecCC---CCcceEEEEEcC-----CCCCHHHHHHHHHHCCcccccccccc
Confidence 99999999899999999999999987 4554322 234445666653 2567899999999999997655555
Q ss_pred -CCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 941 -VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 941 -~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
..+.+||+++..+|++|||+ +++.|++++++
T Consensus 409 ~~~~~lRis~~~~~t~e~id~--~~~~L~~~~~~ 440 (474)
T 1wyu_B 409 IVKEALMVEPTETEAKETLEA--FAEAMGALLKK 440 (474)
T ss_dssp TSTTCEEECCCTTSCHHHHHH--HHHHHHHHHTS
T ss_pred ccCCEEEEEeecCCCHHHHHH--HHHHHHHHHHh
Confidence 35899999999999999999 78888887754
No 3
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=100.00 E-value=8e-37 Score=360.93 Aligned_cols=374 Identities=18% Similarity=0.195 Sum_probs=297.3
Q ss_pred cCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCc---cceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhh
Q 001989 129 TVPKSI-RIDSMKFSKFDEGLTESQMIEHMQKLASMNKV---YKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAE 204 (985)
Q Consensus 129 ~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~---~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e 204 (985)
.||+++ ++.+++|| ++||.|+++++++|+++|.. ...|+| |+++|+.|.++. ++.++ ++.|+|||++
T Consensus 29 ~~p~~~~~~~~~~lp----~~~e~~~~~~~~~l~~~~~~~~~~~~~lg-~~~~~~~p~v~~-~~~~~---~~~~~~~~~~ 99 (474)
T 1wyu_B 29 LIPKEHLREVPPRLP----EVDELTLVRHYTGLSRRQVGVDTTFYPLG-SCTMKYNPKLHE-EAARL---FADLHPYQDP 99 (474)
T ss_dssp HSCGGGBCSSCCCCC----CCCHHHHHHHHHHHHTTCCCTTTSCCCBT-TTCCCCCCHHHH-HHHHT---TSSCCTTSCG
T ss_pred cCCHHHhccCCCCCC----CCCHHHHHHHHHHHHhCCCCcccCccccc-cccccCCHHHHH-HHHHH---HHhcCCCCch
Confidence 499999 88888996 79999999999999999975 345788 899999999885 67765 7889999998
Q ss_pred -HhhhHHHHHHHHHHHHHHhcCCCCcceeec-cchHHHHHHHHHHhh-hhcCCCC-----EEEEcCCCChhHHHHHHHhh
Q 001989 205 -IAQGRLESLLNFQTMIADLTGLPMSNASLL-DEGTAAAEAMAMCNN-IQKGKKK-----TFIIASNCHPQTIDICITRA 276 (985)
Q Consensus 205 -~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~-~~~ta~~ea~~~a~~-~~~~~g~-----~Vlv~~~~H~s~~~~~~~~a 276 (985)
.+||.++.+.++++++++++|++. .+++ .+||.+..+++++.+ +..++|| +||+++..|+++...++
T Consensus 100 ~~~~g~~~l~~~l~~~la~~~g~~~--~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~--- 174 (474)
T 1wyu_B 100 RTAQGALRLMWELGEYLKALTGMDA--ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATAS--- 174 (474)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHH---
T ss_pred hhChHHHHHHHHHHHHHHHHHCCCc--eeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHH---
Confidence 899999999999999999999986 3444 666766665454432 1111444 99999999999998864
Q ss_pred cCCCeEEEEeCc--------hhhhc-cCCCEeEEEEEcCCCCeee-ccHHHHHHHHHhCCcEEEEEecCccccC--CCCC
Q 001989 277 DGFDIKVVVSDL--------KDIDY-KSGDVCGVLVQYPGTEGEV-LDYGDFIKNAHANGVKVVMATDLLALTI--LKPP 344 (985)
Q Consensus 277 ~~~gi~v~~v~~--------~~l~~-l~~~t~~V~v~~pn~~G~v-~di~~I~~~a~~~galliV~a~~~~lg~--l~~~ 344 (985)
..|++++.++. ++|++ ++++|++|++++||++|.+ +|+++|+++||++|+++++|. ..+.+. ..++
T Consensus 175 -~~G~~vv~v~~~~~~~~d~~~L~~~i~~~t~~v~~~~pn~~G~~~~~l~~i~~l~~~~g~~li~De-a~~~~~~g~~~~ 252 (474)
T 1wyu_B 175 -MAGYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDG-ANLNAIMGWARP 252 (474)
T ss_dssp -HTTCEEEEECBCTTSSBCHHHHHHHCSTTEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEG-GGGGGTTTTCCH
T ss_pred -HCCCEEEEecCCCCCCcCHHHHHHhhCCCceEEEEECCCCCcccCCCHHHHHHHHHHcCCEEEEeC-chhhhhccCCCc
Confidence 35888888765 35666 7889999999999999998 799999999999999999952 333222 2356
Q ss_pred CcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccch
Q 001989 345 GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTA 423 (985)
Q Consensus 345 ~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~ 423 (985)
+++|+|++++++ |+|++|+++|||++|+++++++++++++++++|+ + | ..|.+++ +++++++|.+.+ |.
T Consensus 253 ~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~--~--g-~~~~~~~-~~~~~~~~~~~~---~~- 322 (474)
T 1wyu_B 253 GDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVER--G--E-EGFYLDF-DRPKSIGRVRSF---YG- 322 (474)
T ss_dssp HHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEE--C--S-SCEEEEC-CCTTCCCCSSST---TS-
T ss_pred ccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeec--c--C-CeeEecc-cCcccCcccccC---cC-
Confidence 788999999998 8899999999999999999999999998888774 1 3 3477776 578898887543 21
Q ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc-CCCCcceEEEecC--C-HHHHHHHHHHcCcee
Q 001989 424 QALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ-GLPFFDTVKVKCA--D-AHAIASAAYKIEMNL 499 (985)
Q Consensus 424 ~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~--~-~~~v~~~L~~~GI~~ 499 (985)
+.+....+..++..+|.+|++++.++..++++|+++.|+++| +++. +.+.++++.+.++ . ..++.++|.++||.+
T Consensus 323 ~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~~ 401 (474)
T 1wyu_B 323 NFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKG-YRVPYDGPSMHEFVAQPPEGFRALDLAKGLLELGFHP 401 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CBCSSCSSCCSCEEEBCSTTCCHHHHHHHHHHTTCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cEecCCCCcceEEEEEcCCCCCHHHHHHHHHHCCccc
Confidence 233333344466778889999999999999999999999986 8874 3345555666653 2 889999999999976
Q ss_pred eee-----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 500 RVV-----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 500 ~~~-----~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
... ..+.+|++++..+|++|+|+++++|..
T Consensus 402 ~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~ 436 (474)
T 1wyu_B 402 PTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGA 436 (474)
T ss_dssp CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHH
T ss_pred cccccccccCCEEEEEeecCCCHHHHHHHHHHHHH
Confidence 432 247899999999999999999999974
No 4
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=100.00 E-value=1.3e-36 Score=355.39 Aligned_cols=406 Identities=19% Similarity=0.289 Sum_probs=303.4
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCCCHHhhhhhhhccCCCCccCCCCCCCCccccCCCCHHHHHHHHHHHhccccCcccccc
Q 001989 513 ETTTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMI 592 (985)
Q Consensus 513 ~~~t~edId~li~aL~~~~~~~~~~~~l~~~~~~~ip~~~~~~~~~~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~ 592 (985)
.-+|++|++++++.++.+ |+|+|++ +||+++|++ ++ .+| +++||.++++++..+++++.. +..+
T Consensus 4 ~~~~~~~~~~ml~~~g~~-----~~~~~~~----~~p~~~~~~-~~-~lp---~~~~~~~~~~~~~~l~~~~~~--~~~~ 67 (438)
T 1wyu_A 4 TPHTEEEIREMLRRVGAA-----SLEDLFA----HLPKEILSP-PI-DLP---EPLPEWKVLEELRRLAAQNLP--AHKA 67 (438)
T ss_dssp CCCCHHHHHHHHHHHTCS-----STGGGGT----TSCGGGSSC-CC-CCC---CCCCHHHHHHHHHHHHHTSCC--CTTC
T ss_pred CCcCHHHHHHHHHHcCCC-----CHHHHHH----hCcHHHhcC-CC-CCC---CCCCHHHHHHHHHHHHhcCcC--cccc
Confidence 357899999999999988 8999985 599999988 64 777 789999999999999998753 1134
Q ss_pred cccccccC--CCccccccccccccc-cccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceec-CcHHHHHHHHHHHH
Q 001989 593 PLGSCTMK--LNATTEMMPVTWPSF-ANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQP-NAGAAGEYAGLMVI 668 (985)
Q Consensus 593 ~lG~~t~~--~~~~~~~~~~~~~~f-~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~-~sGa~a~~a~l~ai 668 (985)
++|.+.+. .+... ........| .+|+||+| +.++|..++++++++++++++|++..++.. .+++.+.+++++++
T Consensus 68 ~~~~g~~~~~~p~~v-~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~ 145 (438)
T 1wyu_A 68 FLGGGVRSHHVPPVV-QALAARGEFLTAYTPYQP-EVSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLAL 145 (438)
T ss_dssp CCCSSCCCCCCCHHH-HHHHTSHHHHHCCSCCSG-GGCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHH
T ss_pred ccCCCccCCcCcHHH-HHHHhcchhhhcCCCCcc-hhhhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHH
Confidence 56654322 22222 111223455 45889998 899999999999999999999998764333 33333445666655
Q ss_pred HHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccc
Q 001989 669 RAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGV 744 (985)
Q Consensus 669 r~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~ 744 (985)
+. .++++||+++..|+++... ++..|++++.+|. ++|.+|+++ |+ ++|++|++++||++|.
T Consensus 146 ~~-------~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~-~~~~~d~~~----i~---~~t~~v~i~~pn~tG~ 210 (438)
T 1wyu_A 146 RE-------TGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPL-EGGRTPLPE----VG---EEVGAVVVQNPNFLGA 210 (438)
T ss_dssp HH-------HTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECC-BTTBCCCCC----CC---TTEEEEEEESSCTTSB
T ss_pred hc-------CCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcC-cCCccCHHH----hC---CCeEEEEEECCCCCeE
Confidence 32 2578999999988776543 3568999999997 567888776 55 7899999999999999
Q ss_pred cccCHHHHHHHHHHcCCEEEEEcc-ccccccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCc
Q 001989 745 YEEGIDEICKIIHDNGGQVYMDGA-NMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHP 823 (985)
Q Consensus 745 i~~di~eI~~la~~~galliVD~a-~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~ 823 (985)
+. |+++|+++||++|+++|+|.. + +.+.+..++.+|+|++++| +|.|++|+++||||+|++++++++.+.++++.
T Consensus 211 ~~-~l~~i~~la~~~g~~vivd~d~~--a~g~~~~~~~~g~D~~~~s-~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~ 286 (438)
T 1wyu_A 211 LE-DLGPFAEAAHGAGALFVAVADPL--SLGVLKPPGAYGADIAVGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRL 286 (438)
T ss_dssp CC-CHHHHHHHHHHTTCEEEEECCTT--GGGTBCCHHHHTCSEEEEE-CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCC
T ss_pred Ee-cHHHHHHHHHHcCCEEEEEechh--hccCcCCCccCCCCEEEEC-CcccCCCccCCCCCeeEEEEcHHHHHhCCCce
Confidence 98 999999999999999998754 3 2344556678899999999 56699999999999999999999888888766
Q ss_pred cccCCCC-C------------CC-CCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-
Q 001989 824 VVSTGGI-P------------AP-EKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK- 888 (985)
Q Consensus 824 ~g~~~~~-~------------~~-~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~- 888 (985)
.|.+.+. + .+ +++++++++++. +...+..+++++..++.+|++++.++..++++++.++|++
T Consensus 287 ~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~---~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~ 363 (438)
T 1wyu_A 287 VSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTN---AQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEV 363 (438)
T ss_dssp EEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred eccccccCCCcceeeeccccccccchhcccCCccch---HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5542111 0 00 134567777653 2333444556788889999999999999999999999986
Q ss_pred -cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCcc--CC-CCCCCCCEEEEeccCCCCHHHHHHHHcc
Q 001989 889 -HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHG--PT-MSWPVPGTLMIEPTESESKSWTGIVMLS 964 (985)
Q Consensus 889 -g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~--~~-~~~p~~~~lris~t~~~t~eeId~~~~~ 964 (985)
++++. ++ .+.++.+.+.++ .+..+++++|.++||.+ .. ..++ ++.+|||+++++|++|||+ ++
T Consensus 364 ~g~~~~--~~-~~~~~~~~~~~~-------~~~~~~~~~L~~~gi~v~~~~~~~~~-~~~lRis~~~~~t~edi~~--~~ 430 (438)
T 1wyu_A 364 PGVRPF--TP-KPFFNEFALALP-------KDPEAVRRALAERGFHGATPVPREYG-ENLALFAATELHEEEDLLA--LR 430 (438)
T ss_dssp TTCEEC--SC-SSBCSEEEEECS-------SCHHHHHHHHHHTTCCCCEECCTTSC-SSEEEEECCTTCCHHHHHH--HH
T ss_pred CCeEEC--CC-CCeEEEEEEeCC-------CCHHHHHHHHHHCCceeccccccccC-CCeEEEEecccCCHHHHHH--HH
Confidence 44443 22 234554555532 46889999999999998 22 2233 5899999999999999999 66
Q ss_pred CChhHHH
Q 001989 965 SPSEKKL 971 (985)
Q Consensus 965 ~~l~~~~ 971 (985)
+.|++++
T Consensus 431 ~~l~~~l 437 (438)
T 1wyu_A 431 EALKEVL 437 (438)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 7776653
No 5
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.1e-29 Score=299.26 Aligned_cols=382 Identities=15% Similarity=0.142 Sum_probs=271.7
Q ss_pred CCccccCCCCHHHHHHHHHHHhcc--ccCcccccccccc-cccCCCccccccccccccccccCCCCchhhhhhHHHHHHH
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSK--ELSLCHSMIPLGS-CTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNN 636 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~--~~~~~~~~~~lG~-~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e 636 (985)
.+| ..++++.+++++++++... +..+.+ ..++|. ++.. +...+.....+..+.+.+++++ +.++|..++.++
T Consensus 37 ~lp--~~g~~~~~i~~~l~~~~~~~~~~~~~~-~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~ 111 (497)
T 3mc6_A 37 QLP--SNGIPQDDVIEELNKLNDLIPHTQWKE-GKVSGAVYHGG-DDLIHLQTIAYEKYCVANQLHP-DVFPAVRKMESE 111 (497)
T ss_dssp SCC--SSCCCHHHHHHHHHHHHHSSCCCCGGG-TCBSSSCSCCC-HHHHHHHHHHHHHTSSCBTTCT-TTCHHHHHHHHH
T ss_pred CCC--CCCCCHHHHHHHHHHHhhhcCCCCCCC-CCEeeecCCCc-hHHHHHHHHHHHHHhhcCCCCc-ccChHHHHHHHH
Confidence 567 6899999999999999874 444433 334453 1111 1112222222334444566666 778999999999
Q ss_pred HHHHHHHHhCCC--c-cceecCcHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-
Q 001989 637 LGEWLCTITGFD--S-FSLQPNAGAAGEYAGLMVIRAYHKA-RGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA- 711 (985)
Q Consensus 637 ~~~~la~l~G~~--~-~~~~~~sGa~a~~a~l~air~~~~~-~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~- 711 (985)
+++++++++|++ . ..+++++|+++++.++++++.+... +|. ++++|+++...|.++...++..|++++.||+++
T Consensus 112 ~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~-~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~~ 190 (497)
T 3mc6_A 112 VVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGI-TEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPT 190 (497)
T ss_dssp HHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCC-SSCEEEEETTSCHHHHHHHHHSCCEEEEECBCTT
T ss_pred HHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCC-CCceEEEeCCccHHHHHHHHHcCCeEEEEecCcc
Confidence 999999999998 3 3466788888887777777654322 232 357999999999988888999999999999987
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccc---------cCC--CCC
Q 001989 712 KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ---------VGL--TSP 779 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~---------~~l--~~p 779 (985)
++.+|+++|+++|+ +++++|++++|+ ++|.+. |+++|+++|+++|+++|||+++.... +.+ ...
T Consensus 191 ~~~~d~~~l~~~i~---~~~~~v~~~~p~nptG~~~-~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~ 266 (497)
T 3mc6_A 191 TYQVDLGKVKKFIN---KNTVLLVGSAPNFPHGIAD-DIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDF 266 (497)
T ss_dssp TCSBCTTTTGGGCC---SSEEEEEEETTCTTTCCCC-SCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCST
T ss_pred cCcCCHHHHHHHHh---hCCEEEEEECCCCCCCcCC-CHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccc
Confidence 78999999999997 789999999996 699998 89999999999999999999985211 111 123
Q ss_pred CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCcc-ccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 001989 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPV-VSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 780 g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~-g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
...|+|++++++||++. ||+++|+++++++.......... .+.. ......++.++.. ....++.|+
T Consensus 267 ~~~g~d~~~~s~~K~l~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~g~~~--~~~~~a~~a 333 (497)
T 3mc6_A 267 RVPGVTSISCDTHKYGF-----APKGSSVIMYRNSDLRMHQYYVNPAWTG------GLYGSPTLAGSRP--GAIVVGCWA 333 (497)
T ss_dssp TSTTCCEEEEETTTTTC-----CCSSCEEEECSSHHHHTTTSCCBTTCTT------SCBCCSSSCSSCB--HHHHHHHHH
T ss_pred cCCCCcEEEECchhhcC-----CCCCceeEEecCHHHHhhhhcccccccC------CCcCCcCcccCCc--chhHHHHHH
Confidence 45689999999999873 55688999988654332211110 0000 0001112222221 233455688
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC
Q 001989 859 YIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 859 ~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~ 937 (985)
++..++.+|+++..++..+++++++++|++ ..++...++ +....+.+... +.+..++.++|.++||.+...
T Consensus 334 al~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~--~~~~~v~~~~~------~~~~~~l~~~L~~~Gi~v~~~ 405 (497)
T 3mc6_A 334 TMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGN--PRYSVISFSSK------TLNIHELSDRLSKKGWHFNAL 405 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSC--CCSSEEEEECT------TTTHHHHHHHHHTTTCBCEEC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC--CCeeEEEEeCC------CCCHHHHHHHHHhCCEEEecC
Confidence 889999999999999999999999999987 223322221 12223445443 567899999999999988654
Q ss_pred CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccC
Q 001989 938 SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 938 ~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~ 977 (985)
..| +.+|++++ .+|++|+|+ +++.|+++++.++..
T Consensus 406 ~~~--~~~ri~~~-~~t~e~i~~--~~~~L~~~l~~~~~~ 440 (497)
T 3mc6_A 406 QKP--VALHMAFT-RLSAHVVDE--ICDILRTTVQELKSE 440 (497)
T ss_dssp CSS--CCEEEECC-TTTTCTHHH--HHHHHHHHHHHHTCC
T ss_pred CCC--CeEEEEEe-CCCHHHHHH--HHHHHHHHHHHHHhC
Confidence 444 67899999 789999999 889999999887654
No 6
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3e-27 Score=280.59 Aligned_cols=389 Identities=13% Similarity=0.157 Sum_probs=256.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCHHHhhhhcCCCccccCCCCCCCCCCCCCHHHHHHHHHHHhcC--CCccc--eecCCCCCC
Q 001989 102 HNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASM--NKVYK--SFIGMGYYN 177 (985)
Q Consensus 102 ~~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~~~~~~~lp~~~~~~se~e~~~~~~~l~~~--n~~~~--~~lG~g~y~ 177 (985)
-||++++++++||+.++.+..++|+.. +|...+ ..+|| ++++++.+++++++++... +..+. +|.|.-+.+
T Consensus 2 ~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~lp--~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~g~~~~~ 76 (497)
T 3mc6_A 2 GSPFLRGTVEKEVTKVKQSIEDELIRS-DSQLMN--FPQLP--SNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHG 76 (497)
T ss_dssp ------------------------------CCCC--CSSCC--SSCCCHHHHHHHHHHHHHSSCCCCGGGTCBSSSCSCC
T ss_pred CCCchHHHHHHHHHHHHHHHHHhhcCC-cccccc--ccCCC--CCCCCHHHHHHHHHHHhhhcCCCCCCCCCEeeecCCC
Confidence 378999999999999999999999975 665442 24677 6899999999999999875 33332 455533322
Q ss_pred CCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCC--CcceeeccchHHHHHHHHHHhhh-h-cC
Q 001989 178 THVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLP--MSNASLLDEGTAAAEAMAMCNNI-Q-KG 253 (985)
Q Consensus 178 ~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~--~~~~sl~~~~ta~~ea~~~a~~~-~-~~ 253 (985)
. |... +.+.+.-..+..+++++++.++|..+...++++++++++|++ ..++.+++|||.++..++.+.+- . ++
T Consensus 77 ~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~ 153 (497)
T 3mc6_A 77 G--DDLI-HLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHH 153 (497)
T ss_dssp C--HHHH-HHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred c--hHHH-HHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhc
Confidence 1 2222 222222122444578888899999999999999999999998 66899999999888777765431 1 01
Q ss_pred C---CCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHH
Q 001989 254 K---KKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFI 319 (985)
Q Consensus 254 ~---g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~ 319 (985)
+ +++|+++...|+++...++. .|++++.++. ++|++ +++++++|++++| |++|.+.|+++|+
T Consensus 154 ~g~~~~~Vi~~~~~h~~~~~~~~~----~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~ 229 (497)
T 3mc6_A 154 RGITEPEIIAPVTAHAGFDKAAYY----FGMKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLG 229 (497)
T ss_dssp SCCSSCEEEEETTSCHHHHHHHHH----SCCEEEEECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTT
T ss_pred CCCCCceEEEeCCccHHHHHHHHH----cCCeEEEEecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHH
Confidence 2 38999999999999988764 4888888764 34666 7889999999999 5899999999999
Q ss_pred HHHHhCCcEEEEEecCccc-----------cCC--CCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCc
Q 001989 320 KNAHANGVKVVMATDLLAL-----------TIL--KPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGR 386 (985)
Q Consensus 320 ~~a~~~galliV~a~~~~l-----------g~l--~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~ 386 (985)
++||++|++++||. .++- +.+ .....+|+|++++++++++ +||+++|+++++++.++.....
T Consensus 230 ~la~~~g~~livD~-a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l----~~~~~~g~~~~~~~~~~~~~~~ 304 (497)
T 3mc6_A 230 KIAQKYKLPLHVDS-CLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYG----FAPKGSSVIMYRNSDLRMHQYY 304 (497)
T ss_dssp THHHHTTCCEEEET-TTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTT----CCCSSCEEEECSSHHHHTTTSC
T ss_pred HHHHHhCCEEEEEC-cchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhc----CCCCCceeEEecCHHHHhhhhc
Confidence 99999999999953 3321 111 2235679999999995542 3556789999988766554221
Q ss_pred eeeeeecCCCCcceeeecccccccccccccCCCccc-hhH--HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc
Q 001989 387 IVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT-AQA--LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK 463 (985)
Q Consensus 387 ~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t-~~~--l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~ 463 (985)
+.. +..+.. .++.++++ ... ..+..++ +..++.+|++++.++..++++++++.|++
T Consensus 305 ~~~---~~~~~~----------------~~~~~~~g~~~~~~~~a~~aa--l~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 363 (497)
T 3mc6_A 305 VNP---AWTGGL----------------YGSPTLAGSRPGAIVVGCWAT--MVNMGENGYIESCQEIVGAAMKFKKYIQE 363 (497)
T ss_dssp CBT---TCTTSC----------------BCCSSSCSSCBHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc---cccCCC----------------cCCcCcccCCcchhHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 100 000000 01122211 111 2223333 46778899999999999999999999999
Q ss_pred -CCCeEEcCCCCcceEEEecCC--HHHHHHHHHHcCceeeeec-CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 464 -LGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVVD-SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 464 -~g~~~~~~~~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~~-~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.|++++.++....+.|..++ +.++.++|.++||.++... +..+|++++ .+|++|+|+++++|.+
T Consensus 364 ~~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~-~~t~e~i~~~~~~L~~ 432 (497)
T 3mc6_A 364 NIPDLDIMGNPRYSVISFSSKTLNIHELSDRLSKKGWHFNALQKPVALHMAFT-RLSAHVVDEICDILRT 432 (497)
T ss_dssp SCTTCEECSCCCSSEEEEECTTTTHHHHHHHHHTTTCBCEECCSSCCEEEECC-TTTTCTHHHHHHHHHH
T ss_pred cCCCEEEecCCCeeEEEEeCCCCCHHHHHHHHHhCCEEEecCCCCCeEEEEEe-CCCHHHHHHHHHHHHH
Confidence 544998866666677787665 8899999999999887543 567999999 7899999999999984
No 7
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.96 E-value=1.4e-26 Score=271.73 Aligned_cols=384 Identities=12% Similarity=0.024 Sum_probs=258.4
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCc-ccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHH
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSL-CHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLG 638 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~-~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~ 638 (985)
.+| .+|.++.++++.+.++...+... .....+++ +...+...+... ...+-+++++ +.+++..++.++++
T Consensus 17 ~lp--~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~--~~~~~~v~e~~~----~a~~~~~~~~-~~~~~~~~l~~~~~ 87 (452)
T 2dgk_A 17 RFP--LHEMRDDVAFQIINDELYLDGNARQNLATFCQ--TWDDENVHKLMD----LSINKNWIDK-EEYPQSAAIDLRCV 87 (452)
T ss_dssp SCC--CSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSC--CCCCHHHHHHHH----HTTTCBTTCT-TTCHHHHHHHHHHH
T ss_pred CCC--CCCCCHHHHHHHHHHHhcCCCCCccCCCCeeC--CCchHHHHHHHH----HHhccCCCCh-hhChhHHHHHHHHH
Confidence 456 58899999999999998655331 11223333 111111112211 1111123333 45689999999999
Q ss_pred HHHHHHhCCCcc------ceecCcHHHHHHHHHHHHHHHHH----hcCCC-CCCEEEEcCCCCcccHHHHHHCCcEEEEE
Q 001989 639 EWLCTITGFDSF------SLQPNAGAAGEYAGLMVIRAYHK----ARGDH-HRNVCIIPVSAHGTNPATAAMCGMKIVSV 707 (985)
Q Consensus 639 ~~la~l~G~~~~------~~~~~sGa~a~~a~l~air~~~~----~~g~~-~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v 707 (985)
+++++++|++.. .++.++|++|+..++++++.... ..|.. .+++||+++ .|.++...++..|++++.|
T Consensus 88 ~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v 166 (452)
T 2dgk_A 88 NMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREI 166 (452)
T ss_dssp HHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEE
Confidence 999999999864 35667788777666666553211 12311 246899999 9988888889999999999
Q ss_pred cCCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHc------CCEEEEEccccccccCC-CC
Q 001989 708 GTDA-KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDN------GGQVYMDGANMNAQVGL-TS 778 (985)
Q Consensus 708 ~~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~------galliVD~a~~~~~~~l-~~ 778 (985)
|+++ ++.+|+++|+++|+ ++|++|++++|+ ++|.++ |+++|+++|+++ |+++|||+++......+ ..
T Consensus 167 ~~~~~~~~~d~~~l~~~i~---~~t~~v~~~~~~n~tG~~~-~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~ 242 (452)
T 2dgk_A 167 PMRPGQLFMDPKRMIEACD---ENTIGVVPTFGVTYTGNYE-FPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAP 242 (452)
T ss_dssp CCBTTBCSCCHHHHHHHCC---TTEEEEECBBSCTTTCBBC-CHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCT
T ss_pred ecCCCCCeECHHHHHHHHh---hCCEEEEEEcCCcCCcccC-CHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCc
Confidence 9987 69999999999998 789999999995 699998 999999999995 99999999985321100 11
Q ss_pred --C---CccCCcEEEeCCcccccccCCCCCCceEEEEEccc-cc-CcC---CCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 779 --P---GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LA-PFL---PSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 779 --p---g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-l~-~~l---p~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
+ ...++|++++++||++. +|+++|++++++. +. +.+ +.+..+.. ....+..+..+
T Consensus 243 ~~~~~~~~~~~d~~~~~~hK~~~-----~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~r~~ 307 (452)
T 2dgk_A 243 DIVWDFRLPRVKSISASGHKFGL-----APLGCGWVIWRDEEALPQELVFNVDYLGGQI----------GTFAINFSRPA 307 (452)
T ss_dssp TCCCSTTSTTEEEEEEETTTTTC-----CCSSCEEEEESSGGGSCGGGCEEECCTTCCE----------EECCSCCSCBC
T ss_pred cchhhcCCCCCcEEEECcccccC-----CCCCeEEEEEcCHHHHHHHhccCccccCCCC----------CCcccCCCChh
Confidence 1 13378999999999763 5678999999753 32 322 22211100 00001111111
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~ 926 (985)
..+.+.|+.+..+|.+|++++.++..++++++.++|++ ++++..++...+..+.+.+.+++. ...+.+..++.++
T Consensus 308 --~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~-~~~~~~~~~l~~~ 384 (452)
T 2dgk_A 308 --GQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDG-EDPGYTLYDLSER 384 (452)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTT-CCCSCCHHHHHHH
T ss_pred --HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCc-ccccCCHHHHHHH
Confidence 12344577788889999999999999999999999987 355543221012344566666420 0001356899999
Q ss_pred HHHCCCccCCCCCC----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccC
Q 001989 927 LMDYGFHGPTMSWP----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 927 L~~~Gi~~~~~~~p----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~ 977 (985)
|.++||.++....| ..+.+||+++..+|++|+|+ +++.|+++++.++..
T Consensus 385 L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~--li~~l~~~~~~~~~~ 437 (452)
T 2dgk_A 385 LRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAEL--LLEDYKASLKYLSDH 437 (452)
T ss_dssp HHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHH--HHHHHHHHHHHHHHC
T ss_pred HHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHH--HHHHHHHHHHHHHhC
Confidence 99999976542222 13489999999999999999 889999998877654
No 8
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.95 E-value=4.4e-26 Score=271.84 Aligned_cols=384 Identities=15% Similarity=0.153 Sum_probs=262.2
Q ss_pred CCCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHH
Q 001989 559 LTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLG 638 (985)
Q Consensus 559 ~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~ 638 (985)
..+| ..+.++.++++.++++...+.....+..++|+.....+............+.+.+++++ ..+++..++..+++
T Consensus 69 ~~lp--~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~le~~l~ 145 (514)
T 3mad_A 69 ARLP--RAGLPRAEILAEIAAMGAAESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHP-DLWPSTAKFEAEVV 145 (514)
T ss_dssp SSCC--SSCCCHHHHHHHHHHHHHHHHHHHHTTCBSSSCSCCCHHHHHHHHHHHHHHTTCCTTCT-TTCHHHHHHHHHHH
T ss_pred CCCC--CCCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCCCCHHHHHHHHHHHHhhcCCccc-ccChHHHHHHHHHH
Confidence 3556 68999999999999987555321122344554211111111111111222333344443 45678888899999
Q ss_pred HHHHHHhCCCc---cc--eecCcHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 639 EWLCTITGFDS---FS--LQPNAGAAGEYAGLMVIRAYHK-ARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 639 ~~la~l~G~~~---~~--~~~~sGa~a~~a~l~air~~~~-~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
+++++++|.+. .. +++++|++|++.++++++.... .+| .++++||++...|..+...++..|++++.+|++++
T Consensus 146 ~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g-~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~~~ 224 (514)
T 3mad_A 146 AMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKG-ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDAD 224 (514)
T ss_dssp HHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHC-CSSCEEEEETTSCTHHHHHHHHHTCEEEEECBCTT
T ss_pred HHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcC-CCCCeEEEeCccchHHHHHHHHcCCeeEEeeeCCC
Confidence 99999999883 33 6778888888877777765431 123 24589999999998888888889999999999889
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEcccccccc------C----CCCCCc
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV------G----LTSPGY 781 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~------~----l~~pg~ 781 (985)
+.+|+++|+++|+ +++++|++++|+ .+|.+. |+++|+++|+++|+++|+|++|..... + ......
T Consensus 225 ~~~d~~~Le~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~ 300 (514)
T 3mad_A 225 YRADVAAMREAIT---PNTVVVAGSAPGYPHGVVD-PIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRL 300 (514)
T ss_dssp SCBCHHHHHHHCC---TTEEEEEEETTCTTTCCCC-CHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTS
T ss_pred CCCCHHHHHHHhc---cCCEEEEEeCCCCCCcccc-CHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccC
Confidence 9999999999997 789999999996 599998 899999999999999999999742110 1 012245
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCcc-ccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPV-VSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~-g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
.|+|++++++||++. ||+++|+++++++.......... .+... .. ....+.++.. .....+.|+.+
T Consensus 301 ~g~d~~~~s~~K~l~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~gs~~--~~~~~a~~aal 367 (514)
T 3mad_A 301 EGVTSVSADTHKYGY-----GAKGTSVILYRRPDLLHYQYFIAADWPGG--LY----FSPTFAGSRP--GALSATAWAAM 367 (514)
T ss_dssp TTCCEEEECTTTTTC-----CCSSCEEEEESSHHHHTTTCEEESSCTTC--SE----EESSSCSSCC--HHHHHHHHHHH
T ss_pred CCCcEEEECchhccC-----CCCCeEEEEEeCHHHhccccccccccCCC--cc----cCCccCCCCc--hHHHHHHHHHH
Confidence 689999999999963 45688999888654322211000 00000 00 0001111111 12234567888
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC
Q 001989 861 AMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP 940 (985)
Q Consensus 861 ~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p 940 (985)
..++.+++.+..++..++++++.++|++..++...++... .+.+... +.+..++.++|.++||.+....+
T Consensus 368 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~---~~~~~~~------~~~~~~l~~~L~~~Gi~v~g~~~- 437 (514)
T 3mad_A 368 LSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLW---VIAVASD------ELNIYQVMEEMAGRGWRLNGLHR- 437 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCSS---EEEEECS------SSCHHHHHHHHHTTTCBCEEETT-
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCeE---EEEEeCC------CCCHHHHHHHHHhcCCEeccCCC-
Confidence 8889999999999999999999999987323222222111 2333332 46788999999999998854444
Q ss_pred CCCEEEEeccC-CCCHHHHHHHHccCChhHHHHhhcc
Q 001989 941 VPGTLMIEPTE-SESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 941 ~~~~lris~t~-~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
++.+|++++. .++++|||+ +++.|++++++++.
T Consensus 438 -~~~~Ri~~~~~~~~~e~i~~--~l~~L~~~l~~~~~ 471 (514)
T 3mad_A 438 -PPAFHVALTLRHTEPGVVDR--FLADLQDAVAQVRA 471 (514)
T ss_dssp -TTEEEEECCGGGGSTTHHHH--HHHHHHHHHHHHHH
T ss_pred -CCeEEEEEecCCCCHHHHHH--HHHHHHHHHHHHHh
Confidence 3789999984 456799999 88999999988765
No 9
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.94 E-value=3e-26 Score=273.30 Aligned_cols=397 Identities=13% Similarity=0.065 Sum_probs=253.9
Q ss_pred CCccCCCCCCCCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCcc---ccccccccccccccCCCCchhh
Q 001989 550 SGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNAT---TEMMPVTWPSFANIHPFAPADQ 626 (985)
Q Consensus 550 ~~~~~~~~~~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~---~~~~~~~~~~f~~~~p~~p~e~ 626 (985)
+.++..-+. .+| .++.++.++++.++++...+.... ...||++.+....+. .++. ..+.|-+.++. +.
T Consensus 72 ~~l~~~~~~-~~p--~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~l----~~~~n~~~~~~-~~ 142 (515)
T 2jis_A 72 EELKQLLDL-ELR--SQGESQKQILERCRAVIRYSVKTG-HPRFFNQLFSGLDPHALAGRII----TESLNTSQYTY-EI 142 (515)
T ss_dssp HHHHHHHCC-CCC--SSCCCHHHHHHHHHHHHHHSCCTT-STTEESSSCCCCCHHHHHHHHH----HHHHCCCTTCT-TT
T ss_pred HHHHhhccc-CCC--CCCCCHHHHHHHHHHHhcCCCCCC-CCCeEEEeeCCCCHHHHHHHHH----HHHhccCCCch-hh
Confidence 344433333 567 588999999999999888775543 456777532222221 1111 12223232233 56
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCcc-ceecCcHHHHHHHHHHHHHHHH----HhcCC--CCCCEEEEcCCCCcccHHHHHH
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYH----KARGD--HHRNVCIIPVSAHGTNPATAAM 699 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~~-~~~~~sGa~a~~a~l~air~~~----~~~g~--~~~~~IIv~~~~Hg~~~~~a~~ 699 (985)
+++..++.+++++++++++|++.. .++.++|++|++.++.++|.+. ..+|. .++.+|++++..|.++.+.++.
T Consensus 143 s~~~~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~ 222 (515)
T 2jis_A 143 APVFVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAF 222 (515)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHH
Confidence 789999999999999999999753 3555677887777776665432 11221 0122788998889998888888
Q ss_pred CCc---EEEEEcCCCCCCCCHHHHHHHHHhc---CCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEcccccc
Q 001989 700 CGM---KIVSVGTDAKGNINIEELRKAAEAN---RDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 772 (985)
Q Consensus 700 ~G~---~vv~v~~d~~g~iD~e~L~~~i~~~---~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~ 772 (985)
.|+ +++.+|+++++.+|+++|+++|++. ..++++|++++| |.+|.++ |+++|+++|+++|+|+|||+++..+
T Consensus 223 ~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~-~l~~I~~la~~~g~~l~vD~a~~~~ 301 (515)
T 2jis_A 223 LGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFD-PLEAIADVCQRHGLWLHVDAAWGGS 301 (515)
T ss_dssp TTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC-CHHHHHHHHHHHTCEEEEEETTGGG
T ss_pred cCCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCcc-CHHHHHHHHHHcCCeEEEehhhhhH
Confidence 888 8999999888999999999999731 125899999998 4699998 8999999999999999999998533
Q ss_pred ccCCC-----CCCccCCcEEEeCCcccccccCCCCCCceEEEEEccc--ccCc----CCCCccccCCCC-CCCCCCCCCC
Q 001989 773 QVGLT-----SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--LAPF----LPSHPVVSTGGI-PAPEKSQPLG 840 (985)
Q Consensus 773 ~~~l~-----~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~--l~~~----lp~~~~g~~~~~-~~~~~~~~~~ 840 (985)
..... -.+..++|++++++||||+.| .|+|+++++++ +.+. .++++.+...+. ..+ +..+.
T Consensus 302 ~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p-----~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~--~~~~~ 374 (515)
T 2jis_A 302 VLLSQTHRHLLDGIQRADSVAWNPHKLLAAG-----LQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVAL--DTGDK 374 (515)
T ss_dssp GGGCTTTGGGGTTGGGCSEEEECTTSTTCCC-----SCCEEEEESCCSCHHHHHHCC---------CCSCGGG--CCGGG
T ss_pred HHhChhhHhhcCCCccCCEEEECcccccCCC-----CCeeEEEEeChHHHHHHHhcCCchhccCCcccccccC--CCCCC
Confidence 22111 012237899999999998533 25789999866 4332 333332221100 000 00111
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCC-
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAG- 917 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g- 917 (985)
.+..+ ....+...|+.++.+|.+|++++.++..++++++.++|++ ++++. ++ +....+++.+.+-. ..+
T Consensus 375 ~~~~~---rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~--~~--~~~~~v~f~~~p~~-~~~~ 446 (515)
T 2jis_A 375 VVQCG---RRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELV--ME--PEFVNVCFWFVPPS-LRGK 446 (515)
T ss_dssp CSCSS---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEES--SC--CSSSEEEEEECCGG-GTTC
T ss_pred CCCCC---CcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe--CC--CCeeEEEEEEeCcc-cccc
Confidence 11100 0011234577788899999999999999999999999987 34443 21 12233455431100 001
Q ss_pred ---CC--------HHHHHHHHHHCCCccCC-CCCC-CCCEEEEec-cCCCCHHHHHHHHccCChhHHHHh
Q 001989 918 ---IE--------PEDVAKRLMDYGFHGPT-MSWP-VPGTLMIEP-TESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 918 ---~~--------~~~v~~~L~~~Gi~~~~-~~~p-~~~~lris~-t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.+ ...+.+.|.+.|+.... ...+ ..+.+|+++ +.++|++|||+ +++.|++++++
T Consensus 447 ~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~--~~~~l~~~~~~ 514 (515)
T 2jis_A 447 QESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDF--LLNELERLGQD 514 (515)
T ss_dssp TTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHH--HHHHHHHHHTT
T ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHH--HHHHHHHHHhh
Confidence 11 11367778888876421 1111 126899999 89999999999 77888777653
No 10
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=9.9e-25 Score=249.45 Aligned_cols=367 Identities=16% Similarity=0.154 Sum_probs=251.7
Q ss_pred CccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHH
Q 001989 561 HPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEW 640 (985)
Q Consensus 561 ~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~ 640 (985)
+| ..+.++.++++++.++...+..+. +..++|+++...++........ +...+...+ ...++..+...+++++
T Consensus 5 lp--~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~a~~~---~~~~~~~~~-~~~~~~~~~~~~l~~~ 77 (397)
T 3f9t_A 5 MQ--EKGVSEKEILEELKKYRSLDLKYE-DGNIFGSMCSNVLPITRKIVDI---FLETNLGDP-GLFKGTKLLEEKAVAL 77 (397)
T ss_dssp CC--SSCCCHHHHHHHHHHHHTTSCCGG-GTCBCSCSCCCCCTHHHHHHHH---HTTCCTTSG-GGBHHHHHHHHHHHHH
T ss_pred CC--CCCCCHHHHHHHHHHhhccCCCCC-CCCeEEEecCCCcHHHHHHHHH---HHhhcCCCc-ccChhHHHHHHHHHHH
Confidence 56 578899999999999988776654 3456887655544432111111 111011111 2245778888999999
Q ss_pred HHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHh---c--CCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCC
Q 001989 641 LCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKA---R--GDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGN 714 (985)
Q Consensus 641 la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~---~--g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~ 714 (985)
+++++|.+... +++++|++|++.++.+++..... . +..++++|+++...|+.+...++..|++++.+|+++++.
T Consensus 78 la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 157 (397)
T 3f9t_A 78 LGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKEDYT 157 (397)
T ss_dssp HHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCTTSS
T ss_pred HHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCCCCc
Confidence 99999998754 56678888887777766542110 0 113578999999999888888888899999999998899
Q ss_pred CCHHHHHHHHHhcCC-CEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCC----------CCCcc
Q 001989 715 INIEELRKAAEANRD-NLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT----------SPGYI 782 (985)
Q Consensus 715 iD~e~L~~~i~~~~~-~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~----------~pg~~ 782 (985)
+|+++|+++++ + ++++|++++|+ ++|.+. |+++|.++|+++|+++|+|+++.....+.. .+..+
T Consensus 158 ~d~~~l~~~i~---~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~ 233 (397)
T 3f9t_A 158 IDEKFVKDAVE---DYDVDGIIGIAGTTELGTID-NIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDF 233 (397)
T ss_dssp BCHHHHHHHHH---HSCCCEEEEEBSCTTTCCBC-CHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSG
T ss_pred CCHHHHHHHHh---hcCCeEEEEECCCCCCCCCC-CHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccc
Confidence 99999999998 5 78899999984 799998 899999999999999999999852211110 01111
Q ss_pred --CCcEEEeCCcccccccCCCCCCceEEEEEccc-ccCcCC---CCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHH
Q 001989 783 --GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPFLP---SHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 783 --g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-l~~~lp---~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a 856 (985)
++|++++++||+++ +|.++|+++++++ +.+.+. ....+.. .. ...++..+. .....
T Consensus 234 ~~~~~~~~~s~~K~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~~~~~~~--~~~~~ 295 (397)
T 3f9t_A 234 SLGVDSITIDPHKMGH-----CPIPSGGILFKDIGYKRYLDVDAPYLTETR--------QA---TILGTRVGF--GGACT 295 (397)
T ss_dssp GGTCSEEECCTTTTTC-----CCSSCEEEEESSGGGGGGTCEECTTSSSSE--------EC---SSCSSCCSH--HHHHH
T ss_pred cccCCeEEEccccccC-----CCCCceEEEEeCHHHHHhhccCCccccCCC--------cc---ccccccccc--hHHHH
Confidence 78999999999874 2346778877654 443331 1111100 00 000011111 22334
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccC
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP 935 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~ 935 (985)
++.+..++.+++.+..++..++++++.+.|++ ++.+... + ..+.+.+.++ +..++.+.|.++||.+.
T Consensus 296 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~---~~~~~~~~~~--------~~~~~~~~l~~~gi~v~ 363 (397)
T 3f9t_A 296 YAVLRYLGREGQRKIVNECMENTLYLYKKLKENNFKPVIE-P---ILNIVAIEDE--------DYKEVCKKLRDRGIYVS 363 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBSSC-C---SSSEEEEECT--------THHHHHHHHHHTTCBCE
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcC-C---CccEEEEEeC--------CHHHHHHHHHhCCeEEe
Confidence 55666677788888888889999999999987 4554322 1 1222345443 37889999999999876
Q ss_pred CCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 936 TMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 936 ~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.... ++.+||+++..+|++|+++ +++.|+++++
T Consensus 364 ~~~~--~~~~Ri~~~~~~~~e~i~~--~~~~l~~~l~ 396 (397)
T 3f9t_A 364 VCNC--VKALRIVVMPHIKREHIDN--FIEILNSIKR 396 (397)
T ss_dssp ECSS--SSEEEEECCTTCCHHHHHH--HHHHHHHHC-
T ss_pred ccCC--CCEEEEEEcCCCCHHHHHH--HHHHHHHhhC
Confidence 5443 3899999999999999999 7777777653
No 11
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.94 E-value=1.7e-25 Score=266.16 Aligned_cols=392 Identities=13% Similarity=0.074 Sum_probs=255.0
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCcc---ccccccccccccccCCCCchhhhhhHHHHHHH
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNAT---TEMMPVTWPSFANIHPFAPADQAQGYQEMFNN 636 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~---~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e 636 (985)
.+| ..+.++.+++++++++...+..+ ....+||+-....... .++....... +.+.| +.+++..++.++
T Consensus 68 ~~p--~~~~~~~~~~~~~~~~~~~~~~~-~~p~f~~~~~~~~~~~~~~~e~l~~~~~~--~~~~~---~~~p~~~~le~~ 139 (511)
T 3vp6_A 68 ELS--DHPESLEQILVDCRDTLKYGVRT-GHPRFFNQLSTGLDIIGLAGEWLTSTANT--NMFTY---EIAPVFVLMEQI 139 (511)
T ss_dssp CCC--SSCCCHHHHHHHHHHHHHTSCCT-TSTTEESSSSCCCCHHHHHHHHHHHHHCC--CSSCT---TTCHHHHHHHHH
T ss_pred CCC--CCCCCHHHHHHHHHHHhhccCCC-CCCCceEeecCCCcHHHHHHHHHHHHhcc--CCCCc---ccCchHHHHHHH
Confidence 567 57899999999999998887665 4466777432121111 1222111111 11223 346788889999
Q ss_pred HHHHHHHHhCCCc---cceecCcHHHHHHHHHHHHHHHH----HhcCC--CCCCEEEEcCCCCcccHHHHHHCCc---EE
Q 001989 637 LGEWLCTITGFDS---FSLQPNAGAAGEYAGLMVIRAYH----KARGD--HHRNVCIIPVSAHGTNPATAAMCGM---KI 704 (985)
Q Consensus 637 ~~~~la~l~G~~~---~~~~~~sGa~a~~a~l~air~~~----~~~g~--~~~~~IIv~~~~Hg~~~~~a~~~G~---~v 704 (985)
+.+|+++++|++. ..++.++|++|++.++++++... ..+|. .++++|+++...|.++.+.++..|+ ++
T Consensus 140 ~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~ 219 (511)
T 3vp6_A 140 TLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNV 219 (511)
T ss_dssp HHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGE
T ss_pred HHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHcCCCCCcE
Confidence 9999999999983 34566778888877777766431 12231 1456888999999999888998888 99
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhc---CCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCC---
Q 001989 705 VSVGTDAKGNINIEELRKAAEAN---RDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT--- 777 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~---~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~--- 777 (985)
+.+|++++|.+|+++|+++|++. ...+++|++++|+ .+|.++ |+++|+++|+++|+|+|||+++..+.....
T Consensus 220 ~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd-~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~ 298 (511)
T 3vp6_A 220 ILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFD-PIQEIADICEKYNLWLHVDAAWGGGLLMSRKHR 298 (511)
T ss_dssp EEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBC-CHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTG
T ss_pred EEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccc-cHHHHHHHHHHcCCEEEEEccchhhHhhChhhh
Confidence 99999989999999999999731 1128899999985 699998 899999999999999999999853322110
Q ss_pred --CCCccCCcEEEeCCcccccccCCCCCCceEEEEEccc-ccC----cCCCCccccCCCC-CCCC-CCCCCCCCCCcchh
Q 001989 778 --SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAP----FLPSHPVVSTGGI-PAPE-KSQPLGTIAAAPWG 848 (985)
Q Consensus 778 --~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-l~~----~lp~~~~g~~~~~-~~~~-~~~~~~~i~s~~~g 848 (985)
..+..++|++++++||||+.| ++.|++++++. +.. ..+.++.....+. ..+. ..+.. -++.+
T Consensus 299 ~~~~g~~~aDsv~~~~hK~l~~p-----~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~--~~~r~-- 369 (511)
T 3vp6_A 299 HKLNGIERANSVTWNPHKMMGVL-----LQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAI--QCGRH-- 369 (511)
T ss_dssp GGGTTGGGCSEEEECTTSTTCCC-----SCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSS--CSSCC--
T ss_pred hhccCCccCCEEEECcccccCCC-----cCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCCCC--CCCCc--
Confidence 013456899999999999654 35678888753 222 1233322111000 0000 00000 01111
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccc-cCCC-------
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKN-TAGI------- 918 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~-~~g~------- 918 (985)
..+...|+++..+|.+|+.++.++..++++++++.|++ ++++....+ +....+++.+.+... ..+.
T Consensus 370 --~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~--p~~~~v~f~~~p~~~~~~~~~~~~~~~ 445 (511)
T 3vp6_A 370 --VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGE--PEHTNVCFWYIPQSLRGVPDSPQRREK 445 (511)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSC--CSSSCEEEEECCGGGSSCCCCHHHHHH
T ss_pred --hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCC--CCeEEEEEEEeCccccccccchhHHHH
Confidence 12345788899999999999999999999999999986 444432101 223334554421100 0000
Q ss_pred ---CHHHHHHHHHHCCCccCCCCC-CC-CCEEEEec-cCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 919 ---EPEDVAKRLMDYGFHGPTMSW-PV-PGTLMIEP-TESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 919 ---~~~~v~~~L~~~Gi~~~~~~~-p~-~~~lris~-t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
...++.++|.++|+.+....+ +. .+.+|+++ +..+|.+|||+ +++.|+++-+.+.
T Consensus 446 l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~--ll~~i~~~~~~~~ 506 (511)
T 3vp6_A 446 LHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDF--LIEEIERLGQDLH 506 (511)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHH--HHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHH--HHHHHHHHHHhhh
Confidence 134688999999976432111 11 14699999 78999999999 6777777766554
No 12
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.94 E-value=3.4e-25 Score=264.20 Aligned_cols=359 Identities=14% Similarity=0.072 Sum_probs=241.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCc--cceecCCCCCCCCCcHHHHHHHHhCCcccccc-CCC--hhhHhhhHHHH
Q 001989 138 SMKFSKFDEGLTESQMIEHMQKLASMNKV--YKSFIGMGYYNTHVPPVILRNIMENPAWYTQY-TPY--QAEIAQGRLES 212 (985)
Q Consensus 138 ~~~lp~~~~~~se~e~~~~~~~l~~~n~~--~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~-~py--q~e~sqg~l~~ 212 (985)
+.++| .+++++.|++++++++...+.. ...|++....+ ..|..+.. +|+++| +|+ +.+.+++..+.
T Consensus 79 ~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~------~~l~~~~n~~~~~~~~s~~~~~l 149 (515)
T 2jis_A 79 DLELR--SQGESQKQILERCRAVIRYSVKTGHPRFFNQLFSG-LDPHALAG------RIITESLNTSQYTYEIAPVFVLM 149 (515)
T ss_dssp CCCCC--SSCCCHHHHHHHHHHHHHHSCCTTSTTEESSSCCC-CCHHHHHH------HHHHHHHCCCTTCTTTCHHHHHH
T ss_pred ccCCC--CCCCCHHHHHHHHHHHhcCCCCCCCCCeEEEeeCC-CCHHHHHH------HHHHHHhccCCCchhhchHHHHH
Confidence 46677 5789999999999998876643 22355433211 24444432 344444 444 56788999999
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhh-----cCCCC------EEEEcCCCChhHHHHHHHhhcCCCe
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ-----KGKKK------TFIIASNCHPQTIDICITRADGFDI 281 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~-----~~~g~------~Vlv~~~~H~s~~~~~~~~a~~~gi 281 (985)
..++++++|+++|++..++.+++|||.++..++.+.+.. +.+|+ +|++++..|+++...++.+ +.|.
T Consensus 150 e~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~--g~g~ 227 (515)
T 2jis_A 150 EEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFL--GLGT 227 (515)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT--TSCG
T ss_pred HHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHc--CCCC
Confidence 999999999999999888999999997766555443210 11343 8999999999999998754 2343
Q ss_pred -EEEEeCc--------hhhhc-cCC------CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCC
Q 001989 282 -KVVVSDL--------KDIDY-KSG------DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPP 344 (985)
Q Consensus 282 -~v~~v~~--------~~l~~-l~~------~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~ 344 (985)
+++.++. ++|++ +++ ++++|++++| |.+|.+.|+++|+++||++|++++||+ .++.+.+..+
T Consensus 228 ~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~-a~~~~~~~~~ 306 (515)
T 2jis_A 228 DSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDA-AWGGSVLLSQ 306 (515)
T ss_dssp GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEE-TTGGGGGGCT
T ss_pred CcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEeh-hhhhHHHhCh
Confidence 6777764 34555 543 4899999998 789999999999999999999999954 3444433222
Q ss_pred -------CcccceEEEecC-ccccccCCCCCCcEEEEEEchh--hHhc----CCCceeeeeecCCCCc-ceeeecccccc
Q 001989 345 -------GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQE--YKRM----MPGRIVGVSIDSSGKP-ALRVAMQTREQ 409 (985)
Q Consensus 345 -------~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~--~~~~----lp~~~vG~t~d~~g~~-~~~l~l~tre~ 409 (985)
+-.++|++++++ |+|++|. ++|+++++++ ++++ .++.+.|...+..+.. ...+. -+
T Consensus 307 ~~~~~~~g~~~aD~v~~s~hK~l~~p~-----g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~----~~ 377 (515)
T 2jis_A 307 THRHLLDGIQRADSVAWNPHKLLAAGL-----QCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKV----VQ 377 (515)
T ss_dssp TTGGGGTTGGGCSEEEECTTSTTCCCS-----CCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGC----SC
T ss_pred hhHhhcCCCccCCEEEECcccccCCCC-----CeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCC----CC
Confidence 223899999999 6555442 3789999877 6654 4666655322111100 00011 13
Q ss_pred cccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEec-C-----
Q 001989 410 HIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKC-A----- 483 (985)
Q Consensus 410 ~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~-~----- 483 (985)
..||..+ ..+++. +..+|.+|++++.+++.++++++.+.|+++.+++++.++.+..|+|.. +
T Consensus 378 ~~rr~~a-------l~~~~~-----l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~p~~~~~ 445 (515)
T 2jis_A 378 CGRRVDC-------LKLWLM-----WKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRG 445 (515)
T ss_dssp SSCCCCH-------HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEEECCGGGTT
T ss_pred CCCcccH-------HHHHHH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEEeCccccc
Confidence 4445321 223322 355678899999999999999999999998449998766566677743 1
Q ss_pred -----C-H-------HHHHHHHHHcCcee-ee--ec--CCeEEEEe-ccCCCHHHHHHHHHHHhC
Q 001989 484 -----D-A-------HAIASAAYKIEMNL-RV--VD--SNTVTASF-DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 484 -----~-~-------~~v~~~L~~~GI~~-~~--~~--~~~lris~-t~~~t~edId~li~aL~~ 529 (985)
. . ..+.+.|.+.|+.+ .. .. .+.+|+++ ++++|++|||+++++|.+
T Consensus 446 ~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~ 510 (515)
T 2jis_A 446 KQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELER 510 (515)
T ss_dssp CTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1 1 13677788889754 32 12 25799999 899999999999999863
No 13
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.94 E-value=4.5e-25 Score=260.84 Aligned_cols=395 Identities=14% Similarity=0.086 Sum_probs=257.4
Q ss_pred CCCccCCCCCCCCccccCCCCHHHHHHHHHHHhccccCccccccccccccc--CCCcc-ccccccccccccccCCCCchh
Q 001989 549 PSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTM--KLNAT-TEMMPVTWPSFANIHPFAPAD 625 (985)
Q Consensus 549 p~~~~~~~~~~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~--~~~~~-~~~~~~~~~~f~~~~p~~p~e 625 (985)
|..++..=+. .+| ..+.+.+++++.++++...+........++|+-+. ..+.. .++...... .+.+.| +
T Consensus 40 ~~~~~~~~~~-~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~n--~~~~~~---~ 111 (481)
T 4e1o_A 40 PGYLRAQLPE-SAP--EDPDSWDSIFGDIERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAIN--CLGFTW---A 111 (481)
T ss_dssp TTTTGGGSCS-SCC--SSCCCHHHHHHHHHHHTGGGCCCTTSTTBCSSSCCCCCHHHHHHHHHHHHHC--CCCSST---T
T ss_pred HHHHHHhcCC-CCC--CCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeCCCCCCHHHHHHHHHHHHhC--cccCCc---C
Confidence 4444333232 567 68899999999999987666443344566764211 11111 112111111 112223 3
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCcc-----------ceecCcHHHHHHHHHHHHHHHHHh----cCC-------CCCCEE
Q 001989 626 QAQGYQEMFNNLGEWLCTITGFDSF-----------SLQPNAGAAGEYAGLMVIRAYHKA----RGD-------HHRNVC 683 (985)
Q Consensus 626 ~~~G~~~~~~e~~~~la~l~G~~~~-----------~~~~~sGa~a~~a~l~air~~~~~----~g~-------~~~~~I 683 (985)
.+++..++..++.+|+++++|.+.. .++.++|+++++.+++++|..... .+. .++++|
T Consensus 112 ~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v 191 (481)
T 4e1o_A 112 SSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVA 191 (481)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEE
T ss_pred CCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEE
Confidence 4678899999999999999999853 266788899998888887754211 111 145688
Q ss_pred EEcCCCCcccHHHHHHCCcEEEEEcCCCCCCCCHHHHHHHHHhcC---CCEEEEEEEcCC-CccccccCHHHHHHHHHHc
Q 001989 684 IIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANR---DNLSTLMVTYPS-THGVYEEGIDEICKIIHDN 759 (985)
Q Consensus 684 Iv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~---~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~ 759 (985)
+++..+|.++.+.+...|++++.||+++++.+|+++|+++|++.+ ..+.+|+++.++ .+|.++ |+++|+++|+++
T Consensus 192 ~~s~~~H~s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id-~l~~I~~la~~~ 270 (481)
T 4e1o_A 192 YASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFD-CLSELGPICARE 270 (481)
T ss_dssp EEETTSCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC-CHHHHHHHHHHH
T ss_pred EEcCcchHHHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcC-CHHHHHHHHHHc
Confidence 899999999888888899999999998889999999999997321 126778888875 589998 899999999999
Q ss_pred CCEEEEEccccccccCC--CC---CCccCCcEEEeCCcccccccCCCCCCceEEEEEccc-c-cCcC---CCCccccCCC
Q 001989 760 GGQVYMDGANMNAQVGL--TS---PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-L-APFL---PSHPVVSTGG 829 (985)
Q Consensus 760 galliVD~a~~~~~~~l--~~---pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-l-~~~l---p~~~~g~~~~ 829 (985)
|+|+|||+|+..+.... .+ .+-..+|++++++||||+.|+ +.|++++++. . .+.+ +.++.....+
T Consensus 271 ~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~-----g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~ 345 (481)
T 4e1o_A 271 GLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHF-----DCTGFWVKDKYKLQQTFSVNPIYLRHANSG 345 (481)
T ss_dssp TCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS-----SCEEEEESBHHHHHTTTCCCCGGGCCTTTT
T ss_pred CCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCC-----ceEEEEEeCHHHHHHHhcCCchhccCcccC
Confidence 99999999985321110 01 121236999999999997653 5567777753 2 2222 1111110000
Q ss_pred CCCCC-CCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEE
Q 001989 830 IPAPE-KSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFI 906 (985)
Q Consensus 830 ~~~~~-~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~i 906 (985)
.... ..+.. . ++.. ..+...|+.+..+|.+|++++.++..++++++++.|++ ++++. .+ +..+.+.
T Consensus 346 -~~~~~~~~~~-~-~~r~----~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~--~~--~~~~~v~ 414 (481)
T 4e1o_A 346 -VATDFMHWQI-P-LSRR----FRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIP--AK--RHLGLVV 414 (481)
T ss_dssp -TSCCGGGGSS-S-SCCC----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECC--SC--CCSSEEE
T ss_pred -CCCCcccccc-c-CCCC----ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe--cC--CceeEEE
Confidence 0000 00000 0 1111 12345688899999999999999999999999999986 44443 22 2233456
Q ss_pred EEecCccccCCCCHHHHHHHHHHCCCcc-CCCCCCCCCEEEEeccCC-CCHHHHHHHHccCChhHHHHhh
Q 001989 907 VDLRGLKNTAGIEPEDVAKRLMDYGFHG-PTMSWPVPGTLMIEPTES-ESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 907 v~~~~~~~~~g~~~~~v~~~L~~~Gi~~-~~~~~p~~~~lris~t~~-~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+.+++ .+....++.++|.++|+.. ....+.....+|++++.. +|++||++ +++.|+++.+++
T Consensus 415 f~~~~----~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~--~~~~i~~~~~~l 478 (481)
T 4e1o_A 415 FRLKG----PNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILR--DWNLIRDAATLI 478 (481)
T ss_dssp EEESS----CHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHH--HHHHHHHHHHHH
T ss_pred EEeCC----chHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHH--HHHHHHHHHHHH
Confidence 66641 1123578999999998653 221111135799998855 58999999 778888887654
No 14
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.94 E-value=3.6e-25 Score=261.12 Aligned_cols=397 Identities=13% Similarity=0.070 Sum_probs=256.5
Q ss_pred CCCccCCCCCCCCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCc--c-ccccccccccccccCCCCchh
Q 001989 549 PSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNA--T-TEMMPVTWPSFANIHPFAPAD 625 (985)
Q Consensus 549 p~~~~~~~~~~~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~--~-~~~~~~~~~~f~~~~p~~p~e 625 (985)
|..++..=+. .+| ..+.+.+++++.+.+....+........++|+-+..... . .++....+. .+...| +
T Consensus 35 p~~l~~~~~~-~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n--~~~~~~---~ 106 (475)
T 3k40_A 35 PGYLKPLIPD-AAP--EKPEKWQDVMQDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIA--CIGFTW---I 106 (475)
T ss_dssp TTCSGGGSCS-SCC--SSCCCHHHHHHHHHHHTGGGCCCTTCTTBCCSSCCCCCHHHHHHHHHHHHHC--CCSSSC---C
T ss_pred HHHHHHhcCC-CCC--CCCCCHHHHHHHHHHHHhccCCCCCCcCceeeCCCCCcHHHHHHHHHHHHhC--ccccCc---c
Confidence 4455433332 577 688999999999999766654433456677752211111 1 112111111 111223 3
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCcc----------ceecCcHHHHHHHHHHHHHHHHHh----cCC-------CCCCEEE
Q 001989 626 QAQGYQEMFNNLGEWLCTITGFDSF----------SLQPNAGAAGEYAGLMVIRAYHKA----RGD-------HHRNVCI 684 (985)
Q Consensus 626 ~~~G~~~~~~e~~~~la~l~G~~~~----------~~~~~sGa~a~~a~l~air~~~~~----~g~-------~~~~~II 684 (985)
.+++..++.+++.+|+++++|.+.. .++.++|+++++.+++++|..... .+. .++++|+
T Consensus 107 ~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi 186 (475)
T 3k40_A 107 ASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGY 186 (475)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEE
T ss_pred CCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEE
Confidence 3678889999999999999999852 366678898888888877654211 110 1245789
Q ss_pred EcCCCCcccHHHHHHCCcEEEEEcCCCCCCCCHHHHHHHHHhc---CCCEEEEEEEcCC-CccccccCHHHHHHHHHHcC
Q 001989 685 IPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEAN---RDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNG 760 (985)
Q Consensus 685 v~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~---~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~g 760 (985)
++...|.+..+.+...|++++.||+|++| +|+++|+++|++. ...+.+|+++.++ .+|.++ |+++|+++|+++|
T Consensus 187 ~s~~~H~s~~~~~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~-~l~~I~~la~~~~ 264 (475)
T 3k40_A 187 CSDQAHSSVERAGLLGGVKLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFD-YLDECGPVGNKHN 264 (475)
T ss_dssp EETTSCHHHHHHHHHHTCEEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC-CHHHHHHHHHHTT
T ss_pred ECCCchHHHHHHHHHcCCceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcC-CHHHHHHHHHHhC
Confidence 99999998888888999999999999889 9999999999732 1126778888875 599998 8999999999999
Q ss_pred CEEEEEccccccccCCC--C---CCccCCcEEEeCCcccccccCCCCCCceEEEEEccc-cc-CcC---CCCccccCCCC
Q 001989 761 GQVYMDGANMNAQVGLT--S---PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LA-PFL---PSHPVVSTGGI 830 (985)
Q Consensus 761 alliVD~a~~~~~~~l~--~---pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-l~-~~l---p~~~~g~~~~~ 830 (985)
+++|||+|+..+..... . .+-..+|++++++|||++.|+ |+|++++++. .. +.+ +.++.....+
T Consensus 265 ~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~-----g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~- 338 (475)
T 3k40_A 265 LWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNF-----DCSAMWLKDPSWVVNAFNVDPLYLKHDMQG- 338 (475)
T ss_dssp CEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS-----SCEEEEESSGGGC------------------
T ss_pred CeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCC-----ceEEEEEeCHHHHHHHhcCCccccCCCcCC-
Confidence 99999999853211100 0 111247999999999996553 5677888753 22 211 1111110000
Q ss_pred CCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEE
Q 001989 831 PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVD 908 (985)
Q Consensus 831 ~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~ 908 (985)
..+. .....+..+ -...+...|+.+..+|.+|+.++.++..+++++++++|++ ++++.. + +..+.+.+.
T Consensus 339 ~~~~--~~~~~~~~s---r~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~--~--~~~~iv~f~ 409 (475)
T 3k40_A 339 SAPD--YRHWQIPLG---RRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAA--E--INMGLVCFR 409 (475)
T ss_dssp ------------CCC---GGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESS--C--CBTTEEEEE
T ss_pred CCCC--cccccccCC---CcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEec--C--CceEEEEEE
Confidence 0000 000011111 1122355688899999999999999999999999999986 444432 2 123345566
Q ss_pred ecCccccCCCCHHHHHHHHHHCCCccC-CCCCCCCCEEEEeccC-CCCHHHHHHHHccCChhHHHHhhcc
Q 001989 909 LRGLKNTAGIEPEDVAKRLMDYGFHGP-TMSWPVPGTLMIEPTE-SESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 909 ~~~~~~~~g~~~~~v~~~L~~~Gi~~~-~~~~p~~~~lris~t~-~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+++ .+....++.++|.++|+... ...+.-...+|++++. .+|++|||+ +++.|+++.+++.+
T Consensus 410 ~~~----~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~--~~~~i~~~~~~~~~ 473 (475)
T 3k40_A 410 LKG----SNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEY--SWKEVSAAADEMEQ 473 (475)
T ss_dssp ESS----CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHH--HHHHHHHHHHHHHT
T ss_pred eCC----chHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHH--HHHHHHHHHHHHhc
Confidence 541 11235789999999887542 1111113689999874 469999999 88899998877654
No 15
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.94 E-value=3e-25 Score=264.01 Aligned_cols=390 Identities=14% Similarity=0.077 Sum_probs=250.2
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCccc---cccccccccccccCCCCchhhhhhHHHHHHH
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATT---EMMPVTWPSFANIHPFAPADQAQGYQEMFNN 636 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~---~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e 636 (985)
.+| +.+.++.+++++++++...+.... ...+|++.+....+.. ++.. .+.+.+.+.. +.+++..++..+
T Consensus 65 ~~p--~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~l~----~~~n~~~~~~-~~~~~~~~le~~ 136 (504)
T 2okj_A 65 ELS--DHPESLEQILVDCRDTLKYGVRTG-HPRFFNQLSTGLDIIGLAGEWLT----STANTNMFTY-EIAPVFVLMEQI 136 (504)
T ss_dssp CCC--SSCCCHHHHHHHHHHHHHTSCCTT-CTTEESSSSCCCCHHHHHHHHHH----HHHCCBSSCT-TTCHHHHHHHHH
T ss_pred CCC--CCCCCHHHHHHHHHHHhhccCCCC-CCCEEEEccCCCCHHHHHHHHHH----HhhccCCCch-hhChHHHHHHHH
Confidence 566 588999999999999887765433 4567765332222211 1111 1222222222 445677778888
Q ss_pred HHHHHHHHhCCC--cc-ceecCcHHHHHHHHHHHHHHHH----HhcCCC-CCC-EEEEcCCCCcccHHHHHHCCc---EE
Q 001989 637 LGEWLCTITGFD--SF-SLQPNAGAAGEYAGLMVIRAYH----KARGDH-HRN-VCIIPVSAHGTNPATAAMCGM---KI 704 (985)
Q Consensus 637 ~~~~la~l~G~~--~~-~~~~~sGa~a~~a~l~air~~~----~~~g~~-~~~-~IIv~~~~Hg~~~~~a~~~G~---~v 704 (985)
+.+++++++|++ .. .++.++|++|++.++.+++.+. ...|.. .++ +|+++...|.++.+.++..|+ ++
T Consensus 137 ~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~g~~~v 216 (504)
T 2okj_A 137 TLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNV 216 (504)
T ss_dssp HHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGE
T ss_pred HHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcCCCcccE
Confidence 889999999998 43 3556778888877766665421 012210 014 788899999998888887776 89
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhc---CCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccC-----
Q 001989 705 VSVGTDAKGNINIEELRKAAEAN---RDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG----- 775 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~---~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~----- 775 (985)
+.||++++|.+|+++|+++|++. ..++++|++++|+ .+|.++ |+++|+++|+++|+|+|||+++..+...
T Consensus 217 ~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~-~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~ 295 (504)
T 2okj_A 217 ILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFD-PIQEIADICEKYNLWLHVDAAWGGGLLMSRKHR 295 (504)
T ss_dssp EEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBC-CHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTG
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcC-CHHHHHHHHHHcCCEEEEehhhhhHHHhCHhhH
Confidence 99999888999999999999731 1158999999985 699998 8999999999999999999998533211
Q ss_pred CCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEccc-ccC----cCCCCccccCCCC-CCCCCCCCCCCC-CCcchh
Q 001989 776 LTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAP----FLPSHPVVSTGGI-PAPEKSQPLGTI-AAAPWG 848 (985)
Q Consensus 776 l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-l~~----~lp~~~~g~~~~~-~~~~~~~~~~~i-~s~~~g 848 (985)
..-.+..++|++++++|||++.| .++|+++++++ +.. ..++++++...+. ... ......+ ++..++
T Consensus 296 ~~~~g~~~~D~i~~~~hK~~~~p-----~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~rr~~ 368 (504)
T 2okj_A 296 HKLNGIERANSVTWNPHKMMGVL-----LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSY--DTGDKAIQCGRHVD 368 (504)
T ss_dssp GGGTTGGGCSEEEECTTSTTCCC-----SCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGG--CCGGGSSCSSCBCC
T ss_pred hhcCCcccCCEEEECchhhcCCC-----cceEEEEEECHHHHHHHhcCCCccccCCcccccCcC--CcccCCCCCCCCcc
Confidence 00122347999999999998543 25789999863 432 3344333211100 000 0000000 111111
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCC---------
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAG--------- 917 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g--------- 917 (985)
....|+.++.+|.+|+.++.++..++++++.++|++ ++++....+ +....+++...+-. ..+
T Consensus 369 ----~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~--p~~~~v~f~~~~~~-~~~~~~~~~~~~ 441 (504)
T 2okj_A 369 ----IFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGE--PEHTNVCFWYIPQS-LRGVPDSPQRRE 441 (504)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSC--CSSSCEEEEECCGG-GSSCCCCHHHHH
T ss_pred ----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCC--CCeEEEEEEEeCcc-ccccccchhhHH
Confidence 234567788889999999999999999999999986 444432111 22223444432100 000
Q ss_pred ---CCHHHHHHHHHHCCCc-cCCCCCCC-CCEEEEecc-CCCCHHHHHHHHccCChhHHHHhh
Q 001989 918 ---IEPEDVAKRLMDYGFH-GPTMSWPV-PGTLMIEPT-ESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 918 ---~~~~~v~~~L~~~Gi~-~~~~~~p~-~~~lris~t-~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
....++.++|.++|+. +....+.. .+.+|++++ ..+|++|||+ +++.|+++.+++
T Consensus 442 ~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~--~~~~l~~~~~~~ 502 (504)
T 2okj_A 442 KLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDF--LIEEIERLGQDL 502 (504)
T ss_dssp HHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHH--HHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHH--HHHHHHHHHHHH
Confidence 0145788899999964 33211211 258999997 8999999999 778888776643
No 16
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.94 E-value=7.6e-25 Score=259.29 Aligned_cols=387 Identities=14% Similarity=0.100 Sum_probs=249.6
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCc---cccccccccccccccCCCCchhhhhhHHHHHHH
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNA---TTEMMPVTWPSFANIHPFAPADQAQGYQEMFNN 636 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~---~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e 636 (985)
.+| +++.++.++++.++++...+........++|+-+..... ..++.. ...+-+.+.. +.+++..++.++
T Consensus 45 ~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~----~~~n~~~~~~-~~~~~~~~le~~ 117 (486)
T 1js3_A 45 TAP--QEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLC----GAIGCIGFSW-AASPACTELETV 117 (486)
T ss_dssp SCC--SSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSSCCCCCHHHHHHHHHH----HHHCCCCSSG-GGCHHHHHHHHH
T ss_pred cCC--CCCCCHHHHHHHHHHHHhcCCCCCCCCCceEeCCCCCCHHHHHHHHHH----HHhCcCcccc-ccChhHHHHHHH
Confidence 567 588999999999999776665444456677753211111 111111 1112111111 345677888888
Q ss_pred HHHHHHHHhCCCcc----------ceecCcHHHHHHHHHHHHHHHHHh----c-CC------CCCCEEEEcCCCCcccHH
Q 001989 637 LGEWLCTITGFDSF----------SLQPNAGAAGEYAGLMVIRAYHKA----R-GD------HHRNVCIIPVSAHGTNPA 695 (985)
Q Consensus 637 ~~~~la~l~G~~~~----------~~~~~sGa~a~~a~l~air~~~~~----~-g~------~~~~~IIv~~~~Hg~~~~ 695 (985)
+.+|+++++|++.. .+++++|++|+..++.+++..... . |. .++..|+++...|.++.+
T Consensus 118 ~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~ 197 (486)
T 1js3_A 118 MMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVER 197 (486)
T ss_dssp HHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHH
T ss_pred HHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHH
Confidence 99999999999853 356677888887777666542111 0 10 001137789999988888
Q ss_pred HHHHCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCE------EEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEcc
Q 001989 696 TAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNL------STLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGA 768 (985)
Q Consensus 696 ~a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t------~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a 768 (985)
.++..|++++.||++++|.+|+++|+++|+ +++ .+|++++|+ .+|.++ |+++|+++|+++|+++|||++
T Consensus 198 ~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~---~~~~~g~~p~~vv~~~~~n~tG~~~-~l~~I~~la~~~~~~lhvD~a 273 (486)
T 1js3_A 198 AGLIGGVKLKAIPSDGKFAMRASALQEALE---RDKAAGLIPFFVVATLGTTSCCSFD-NLLEVGPICHEEDIWLHVDAA 273 (486)
T ss_dssp HHHHHTCEEEEECCCTTSCCCHHHHHHHHH---HHHHTTCEEEEEEEEBSCTTTCCBC-CHHHHHHHHHHTTCEEEEECT
T ss_pred HHHhCCCceEEeecCCCCCCCHHHHHHHHH---HHHhCCCCceEEEEeCCCCCCCCCC-CHHHHHHHHHHcCCEEEEehh
Confidence 888999999999998889999999999997 333 488889984 699998 999999999999999999999
Q ss_pred ccccccCCCC-----CCccCCcEEEeCCcccccccCCCCCCceEEEEEccc--ccCcC---CCCccccCCCC-CCCC-CC
Q 001989 769 NMNAQVGLTS-----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--LAPFL---PSHPVVSTGGI-PAPE-KS 836 (985)
Q Consensus 769 ~~~~~~~l~~-----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~--l~~~l---p~~~~g~~~~~-~~~~-~~ 836 (985)
+..+...... .+..++|++++++||+++.| +++|++++++. +.+.+ +.++.+..... .... ..
T Consensus 274 ~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p-----~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~ 348 (486)
T 1js3_A 274 YAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-----FDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRH 348 (486)
T ss_dssp TGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-----SSCEEEEESCHHHHHGGGC------------CCSCCCGGG
T ss_pred hHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCC-----cceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccc
Confidence 8532211111 12236899999999998654 36789998754 23332 22222110000 0000 00
Q ss_pred CCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccc
Q 001989 837 QPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKN 914 (985)
Q Consensus 837 ~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~ 914 (985)
.... .+..+ .+...|+++..+|.+|++++.++..++++++.++|++ ++++.. + +..+.+.+.+.+
T Consensus 349 ~~~~--~~rr~----~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~--~--~~~~~v~f~~~~--- 415 (486)
T 1js3_A 349 WQLP--LGRRF----RSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCA--E--VTLGLVCFRLKG--- 415 (486)
T ss_dssp SSSC--SCCCC----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECS--C--CCSSEEEEEESS---
T ss_pred cCCC--CCCch----hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeC--C--CceeEEEEEecC---
Confidence 0000 11111 1345678888899999999999999999999999986 344322 1 223345566541
Q ss_pred cCCCCHHHHHHHHHHCCCcc-CCCCCCCCCEEEEecc-CCCCHHHHHHHHccCChhHHHHhhccCC
Q 001989 915 TAGIEPEDVAKRLMDYGFHG-PTMSWPVPGTLMIEPT-ESESKSWTGIVMLSSPSEKKLHRLKMGR 978 (985)
Q Consensus 915 ~~g~~~~~v~~~L~~~Gi~~-~~~~~p~~~~lris~t-~~~t~eeId~~~~~~~l~~~~~~~~~~~ 978 (985)
.+....++.++|.++|+.. ....+...+.+|++++ ..+|++||++ +++.|+++++++....
T Consensus 416 -~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~--~~~~l~~~~~~~~~~~ 478 (486)
T 1js3_A 416 -SDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRL--AWEHIRGLAAELLAAE 478 (486)
T ss_dssp -CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHH--HHHHHHHHHHHHHC--
T ss_pred -hHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHH--HHHHHHHHHHHHHhhh
Confidence 0011478999999888763 2222222368999974 5689999999 8889999888776543
No 17
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.93 E-value=8.4e-24 Score=247.95 Aligned_cols=347 Identities=12% Similarity=0.071 Sum_probs=241.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCc----cceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHH
Q 001989 139 MKFSKFDEGLTESQMIEHMQKLASMNKV----YKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLL 214 (985)
Q Consensus 139 ~~lp~~~~~~se~e~~~~~~~l~~~n~~----~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~ 214 (985)
++|| .+++++.++++++.++..++.. ...|.+ ++.++.+.+.+.+. +. -++++++.+++..+...
T Consensus 16 ~~lp--~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~-----~~~~~~v~e~~~~a---~~-~~~~~~~~~~~~~~l~~ 84 (452)
T 2dgk_A 16 KRFP--LHEMRDDVAFQIINDELYLDGNARQNLATFCQ-----TWDDENVHKLMDLS---IN-KNWIDKEEYPQSAAIDL 84 (452)
T ss_dssp CSCC--CSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSC-----CCCCHHHHHHHHHT---TT-CBTTCTTTCHHHHHHHH
T ss_pred CCCC--CCCCCHHHHHHHHHHHhcCCCCCccCCCCeeC-----CCchHHHHHHHHHH---hc-cCCCChhhChhHHHHHH
Confidence 4566 5789999999999999865533 123333 33444554444421 11 13455666789999999
Q ss_pred HHHHHHHHhcCCCCcc-----eeeccchHHHHHHHHHHhhhh-------cC---CCCEEEEcCCCChhHHHHHHHhhcCC
Q 001989 215 NFQTMIADLTGLPMSN-----ASLLDEGTAAAEAMAMCNNIQ-------KG---KKKTFIIASNCHPQTIDICITRADGF 279 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~-----~sl~~~~ta~~ea~~~a~~~~-------~~---~g~~Vlv~~~~H~s~~~~~~~~a~~~ 279 (985)
++++++|+++|++..+ +.+++|||.++..++++.+.. .+ .+++||+++ .|+++...++. .
T Consensus 85 ~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~----~ 159 (452)
T 2dgk_A 85 RCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARY----W 159 (452)
T ss_dssp HHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHHH----T
T ss_pred HHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHHH----c
Confidence 9999999999999775 889999997776665554310 11 136999999 99999988753 5
Q ss_pred CeEEEEeCch---------hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhC------CcEEEEEecCccccCC-
Q 001989 280 DIKVVVSDLK---------DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHAN------GVKVVMATDLLALTIL- 341 (985)
Q Consensus 280 gi~v~~v~~~---------~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~------galliV~a~~~~lg~l- 341 (985)
|++++.++.+ +|++ ++++|++|++++| |++|.++|+++|+++||++ |++++||+ .++.+..
T Consensus 160 G~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~-a~~~~~~~ 238 (452)
T 2dgk_A 160 DVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDA-ASGGFLAP 238 (452)
T ss_dssp TCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEEC-TTGGGTHH
T ss_pred CceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEc-ccHHHHHH
Confidence 8899888653 3555 7889999999998 6899999999999999995 99999954 2332211
Q ss_pred --CCC-----CcccceEEEecCccccccCCCCCCcEEEEEEchh-hH-hcCC---CceeeeeecCCCCcceeeecccccc
Q 001989 342 --KPP-----GELGADIVVGSAQRFGVPMGYGGPHAAFLATSQE-YK-RMMP---GRIVGVSIDSSGKPALRVAMQTREQ 409 (985)
Q Consensus 342 --~~~-----~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~-~~-~~lp---~~~vG~t~d~~g~~~~~l~l~tre~ 409 (985)
..+ ...|+|++++++++++ ++|+++|+++++++ ++ +.+. +.+ | +.. ....+
T Consensus 239 ~~~~~~~~~~~~~~~d~~~~~~hK~~----~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~------~~~-~~~~~----- 301 (452)
T 2dgk_A 239 FVAPDIVWDFRLPRVKSISASGHKFG----LAPLGCGWVIWRDEEALPQELVFNVDYL-G------GQI-GTFAI----- 301 (452)
T ss_dssp HHCTTCCCSTTSTTEEEEEEETTTTT----CCCSSCEEEEESSGGGSCGGGCEEECCT-T------CCE-EECCS-----
T ss_pred hhCccchhhcCCCCCcEEEECccccc----CCCCCeEEEEEcCHHHHHHHhccCcccc-C------CCC-CCccc-----
Confidence 111 2348999999996564 45678899999754 33 3331 111 1 000 00000
Q ss_pred cccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC----CCcceEEEecCC-
Q 001989 410 HIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL----PFFDTVKVKCAD- 484 (985)
Q Consensus 410 ~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~----~~~~~~~~~~~~- 484 (985)
.+|.+. ....++.++ +..+|.+|++++.++..++++++.+.|+++++++++.+ +.++.+.|+.++
T Consensus 302 -----~~~r~~---~~~~~~~aa--l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~ 371 (452)
T 2dgk_A 302 -----NFSRPA---GQVIAQYYE--FLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDG 371 (452)
T ss_dssp -----CCSCBC---HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTT
T ss_pred -----CCCChh---HHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCc
Confidence 111111 122333333 35668899999999999999999999999966998742 456677776543
Q ss_pred ------HHHHHHHHHHcCceeeee--c-----CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 485 ------AHAIASAAYKIEMNLRVV--D-----SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 ------~~~v~~~L~~~GI~~~~~--~-----~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..++.++|.++||.++.. . .+.+|+|++..+|++|+|+|+++|++
T Consensus 372 ~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~ 429 (452)
T 2dgk_A 372 EDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKA 429 (452)
T ss_dssp CCCSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHH
Confidence 389999999999976432 1 24799999999999999999999974
No 18
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.93 E-value=2.2e-23 Score=247.59 Aligned_cols=378 Identities=12% Similarity=0.076 Sum_probs=253.8
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCcccccccccc-cccCCCccc-cccccccccccccCCCCchhhhhhHHHHHHHH
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGS-CTMKLNATT-EMMPVTWPSFANIHPFAPADQAQGYQEMFNNL 637 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~-~t~~~~~~~-~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~ 637 (985)
.+| ..+.+..++++.++.....+- +...++.+ +++...+.. +.+...... ++. .+ +.+++..++.+++
T Consensus 31 ~~p--~~~~~~~~~~~~~~~~i~l~g---np~~~l~s~~t~~~~~~v~~~l~~~~~~--~~~--~~-~~~p~~~~le~~~ 100 (502)
T 3hbx_A 31 KMP--ENSIPKEAAYQIINDELMLDG---NPRLNLASFVTTWMEPECDKLIMSSINK--NYV--DM-DEYPVTTELQNRC 100 (502)
T ss_dssp SCC--SSCCCHHHHHHHHHHHGGGSC---CGGGBTTCCSCCCCCHHHHHHHHHTTTC--BTT--CT-TTCHHHHHHHHHH
T ss_pred CCC--CCCCCHHHHHHHHHHHhccCC---CCCceeccccCCCCCHHHHHHHHHHhcc--CCC--Ch-hcChhHHHHHHHH
Confidence 466 578899999999887654331 11223443 444443322 111111111 111 11 2356788889999
Q ss_pred HHHHHHHhCCC--cc----ceecCcHHHHHHHHHHHHHH-HHHh---cCCC-CCCEEEEcCCCCcccHHHHHHCCcEEEE
Q 001989 638 GEWLCTITGFD--SF----SLQPNAGAAGEYAGLMVIRA-YHKA---RGDH-HRNVCIIPVSAHGTNPATAAMCGMKIVS 706 (985)
Q Consensus 638 ~~~la~l~G~~--~~----~~~~~sGa~a~~a~l~air~-~~~~---~g~~-~~~~IIv~~~~Hg~~~~~a~~~G~~vv~ 706 (985)
++++++++|++ .. .+++++|++++..++++++. +... .|.. .+++||++...|.++...++..|++++.
T Consensus 101 ~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~ 180 (502)
T 3hbx_A 101 VNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKE 180 (502)
T ss_dssp HHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEE
Confidence 99999999998 21 23467788877666555543 2111 1321 1238999999898888888999999999
Q ss_pred EcCCCC-CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHc------CCEEEEEccccccccCC-C
Q 001989 707 VGTDAK-GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDN------GGQVYMDGANMNAQVGL-T 777 (985)
Q Consensus 707 v~~d~~-g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~------galliVD~a~~~~~~~l-~ 777 (985)
||++++ +.+|+++|+++|+ ++|++|++++|+ ++|.++ |+++|+++|+++ |+++|||+|+.....++ .
T Consensus 181 v~~~~~~~~~d~~~l~~~i~---~~t~~v~~~~~~n~tG~~~-~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~ 256 (502)
T 3hbx_A 181 VKLSEGYYVMDPQQAVDMVD---ENTICVAAILGSTLNGEFE-DVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLY 256 (502)
T ss_dssp ECCBTTBCSCCHHHHHHHCC---TTEEEEEEEBSCTTTCCBC-CHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHC
T ss_pred EecCCCcCcCCHHHHHHHHh---hCCEEEEEecCCCCCCccc-CHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhC
Confidence 999876 8999999999998 789999999985 699998 899999999999 99999999985221100 1
Q ss_pred C-----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcc-ccc-CcC---CCCccccCCCCCCCCCCCCCCCCCCcch
Q 001989 778 S-----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLA-PFL---PSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 778 ~-----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~-~~l---p~~~~g~~~~~~~~~~~~~~~~i~s~~~ 847 (985)
. ....++|++++++||++. +++|+|++++++ ... ..+ +.+. +... .. ..+..+..
T Consensus 257 ~~~~~~~~~~~~D~v~~s~hK~l~-----~p~g~G~~~~~~~~~l~~~~~~~~~yl-~~~~------~~---~~~~~sr~ 321 (502)
T 3hbx_A 257 PELEWDFRLPLVKSINVSGHKYGL-----VYAGIGWVIWRNKEDLPEELIFHINYL-GADQ------PT---FTLNFSKG 321 (502)
T ss_dssp TTCCCSTTSTTEEEEEEETTTTTC-----CCSSCEEEEESSGGGSCGGGCEEECSS-SSCE------EE---CCSCCSCB
T ss_pred cccccccCCCCceEEEECcccccC-----CCCCeEEEEEeCHHHhhHHhccCcccc-cCCC------CC---ccccCCch
Confidence 1 123479999999999974 345788888774 332 111 1111 1000 00 00111111
Q ss_pred hhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc--CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHH
Q 001989 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH--YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAK 925 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g--~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~ 925 (985)
+ ..+.+.|+.+..+|.+|+.++.++..+++++|+++|++. +++... .+..+.+.+.+++ ..+.+..++.+
T Consensus 322 ~--~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~---~~~~~~v~f~~~~---~~~~~~~~l~~ 393 (502)
T 3hbx_A 322 S--SQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSK---DEGVPLVAFSLKD---SSCHTEFEISD 393 (502)
T ss_dssp S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSC---SSSSSEEEEEESS---CSSCCHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeC---CCCceEEEEEecC---CCcCCHHHHHH
Confidence 1 123456788899999999999999999999999999872 444322 1223445666642 11356779999
Q ss_pred HHHHCCCccCCCCCCC----CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 926 RLMDYGFHGPTMSWPV----PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 926 ~L~~~Gi~~~~~~~p~----~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+|.++||.+.....|. ...+||+++..+|.||+|+ +++.|+++++.++.
T Consensus 394 ~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~--li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 394 MLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAER--LVIDIEKVMRELDE 446 (502)
T ss_dssp HHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHH--HHHHHHHHHHHHHT
T ss_pred HHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHH--HHHHHHHHHHHHHh
Confidence 9999999986544331 2579999999999999999 88899999887765
No 19
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.92 E-value=3.9e-23 Score=245.29 Aligned_cols=382 Identities=15% Similarity=0.145 Sum_probs=244.1
Q ss_pred cCCCCHHHHHHHHHHHhccccCccccccccccc-ccCCCccc--cccccccccccccCCCCchhhhhhHHHHHHHHHHHH
Q 001989 565 NKYHTEHELLRYIHLLQSKELSLCHSMIPLGSC-TMKLNATT--EMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWL 641 (985)
Q Consensus 565 ~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~-t~~~~~~~--~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~l 641 (985)
+.+.+.+++++.+.+..-.+.....+..|||+. ++...+.. ++..... ..+.+.| +.+++..++..++++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~v~~~~~~~~~--n~~~~~~---~~~~~~~~le~~~~~~l 149 (497)
T 2qma_A 75 NKNAPLKSVIDDVAELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAAL--NQSMDSW---DQASSATYVEQKVVNWL 149 (497)
T ss_dssp SCCCCHHHHHHHHHHHTTTTSCCTTSTTBCSSSCCCCBHHHHHHHHHHHHH--CCCTTCG---GGCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeCCCCCcHHHHHHHHHHHhh--cccccch---hhChHHHHHHHHHHHHH
Confidence 467788999999987554444333456788852 22222221 1111111 1112222 33567778888889999
Q ss_pred HHHhCCCc--cceecCcHHHHHHHHHHHHHHHHH---------hcCCCC--CC-EEEEcCCCCcccHHHHHHCCc---EE
Q 001989 642 CTITGFDS--FSLQPNAGAAGEYAGLMVIRAYHK---------ARGDHH--RN-VCIIPVSAHGTNPATAAMCGM---KI 704 (985)
Q Consensus 642 a~l~G~~~--~~~~~~sGa~a~~a~l~air~~~~---------~~g~~~--~~-~IIv~~~~Hg~~~~~a~~~G~---~v 704 (985)
++++|.+. ..++.++|++|++.++.++|.+.. ..|... ++ +|+++...|.++...+...|. ++
T Consensus 150 a~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v 229 (497)
T 2qma_A 150 CDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAV 229 (497)
T ss_dssp HHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGE
T ss_pred HHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccE
Confidence 99999864 346667888888888887765322 123211 34 788899899988888888766 89
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcC-CC--EEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-C-
Q 001989 705 VSVGTDAKGNINIEELRKAAEANR-DN--LSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-S- 778 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~-~~--t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-~- 778 (985)
+.+|+++++.+|+++|+++|++.. .. +.+|++++++ .+|.++ |+++|+++|+++|+++|||+++..+..... .
T Consensus 230 ~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~-~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~ 308 (497)
T 2qma_A 230 MTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAID-DLDFIADMAVKHDMWMHVDGAYGGALILSSHKS 308 (497)
T ss_dssp EEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC-CHHHHHHHHHHHTCEEEEEETTGGGGGGSTTGG
T ss_pred EEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCC-CHHHHHHHHHHcCCEEEEehhhhHHHHhCcchH
Confidence 999998889999999999997320 12 4488888875 599998 899999999999999999999853322111 0
Q ss_pred --CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccc-cCcCC---CCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 779 --PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHL-APFLP---SHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 779 --pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l-~~~lp---~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
.+-.++|++++++||||+.| .++|+++++++. .+.+. .++.+. .+....-..... . ++.. ..
T Consensus 309 ~~~gi~~~D~i~~s~hK~l~~p-----~~~G~l~~~~~~~~~~~~~~~~yl~~~-~~~~~~~~~~~~-~-~~r~----~~ 376 (497)
T 2qma_A 309 RLKGVERAHSISVDFHKLFYQT-----ISCGALLVNDKSNFKFLLHHADYLNRE-HDELPNLVDKSI-A-TTKR----FD 376 (497)
T ss_dssp GGTTGGGCSEEEEETTTTTCCC-----SSCEEEEESCGGGGGGGCC----------------------C-CSCC----CT
T ss_pred hhcCcccCCEEEEcchhccCCC-----cceEEEEEeCHHHHHHhcCCchhcCCc-cccCCCccccCC-C-CCCc----hh
Confidence 11126899999999998643 367888887542 32221 111000 000000000000 0 0000 11
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCCC----HHHHHHH
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIE----PEDVAKR 926 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~----~~~v~~~ 926 (985)
+...|+.++.+|.+|+.++.++..++++++.+.|++ ++++.. .+ ....+.+.+.+ .+.. ..++.++
T Consensus 377 al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~-~~---~~~~v~f~~~~----~~~~~~~l~~~l~~~ 448 (497)
T 2qma_A 377 ALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLA-EP---SLSTVLFRATH----ETADLDELNKALRLE 448 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECS-CC---SSSEEEEEECC----SSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEc-CC---CceEEEEEEcC----CccCHHHHHHHHHHH
Confidence 234578889999999999999999999999999987 344322 22 12234555531 1112 2467788
Q ss_pred HHHCCCccCCC-CCCCCCEEEEec-cCCCCHHHHHHHHccCChhHHHHhh
Q 001989 927 LMDYGFHGPTM-SWPVPGTLMIEP-TESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 927 L~~~Gi~~~~~-~~p~~~~lris~-t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
|.++|+.+... .+...+.+|+++ +..+|++|||+ +++.|+++++++
T Consensus 449 l~~~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~--~~~~l~~~~~~~ 496 (497)
T 2qma_A 449 ALTRGIAVLGETIVDGKTALKFTILNPCLTTSDFES--LLSKINMLAVEL 496 (497)
T ss_dssp HHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHH--HHHHHHHHHHHC
T ss_pred HHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHH--HHHHHHHHHHhh
Confidence 88899886431 111135899998 88999999999 778888877653
No 20
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.91 E-value=1.5e-23 Score=246.02 Aligned_cols=358 Identities=15% Similarity=0.093 Sum_probs=233.0
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCcccccccccc-cccCCCccc-cc-c---------cc-ccccccccCCCCchhh
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGS-CTMKLNATT-EM-M---------PV-TWPSFANIHPFAPADQ 626 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~-~t~~~~~~~-~~-~---------~~-~~~~f~~~~p~~p~e~ 626 (985)
.+| ..|+++.++.+.++++...+. .++|.. ++.+.+... +. . +. ....+.+.+| .. ..
T Consensus 57 ~lp--~~g~~~~~i~~~~~~~~~~~~-----~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~ 127 (456)
T 2z67_A 57 KIP--ENGIDDEKIKLFLKFLSMMDT-----DKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQP-KA-SG 127 (456)
T ss_dssp SCC--SSCCCHHHHHHHHHHHHTTBG-----GGCTTCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCT-TB-HH
T ss_pred CCC--CCCCCHHHHHHHHHHHHhccc-----cccccccccccccccccccccCccccccCCCccHHHHHHhhCc-cc-cc
Confidence 356 478899999999888876542 245542 333333221 10 0 00 0112222233 11 33
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCccceecCcHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEE
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDSFSLQPNAGA-AGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa-~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv 705 (985)
+++..++.+++++++++++|++...++.++|+ .++.+++++++.+. ++++||+++..|.+....++..|++++
T Consensus 128 ~~~~~~~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~------~~~~vi~~~~~h~s~~~~~~~~G~~~~ 201 (456)
T 2z67_A 128 ASIMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKY------GSNVVIYPYASHKSPIKAVSFVGMNMR 201 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHH------CCCEEEEECCCCHHHHHHHHHTTCEEE
T ss_pred CcHHHHHHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhc------CCCEEEEECCCcHHHHHHHHHcCCCce
Confidence 44678888999999999999986434445555 45544555544321 356788888889888888888999999
Q ss_pred EEcC---CCCCCCCHHHHHHHH-Hhc-CCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC--
Q 001989 706 SVGT---DAKGNINIEELRKAA-EAN-RDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-- 777 (985)
Q Consensus 706 ~v~~---d~~g~iD~e~L~~~i-~~~-~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-- 777 (985)
.++. +++|.+|+++|+++| +.. ++++.+|++++| |.+|.++ |+++|+++|+++|+++|||+|+.....+..
T Consensus 202 ~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~-~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~ 280 (456)
T 2z67_A 202 LVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSD-DIVEIAKICENYDIPHIINGAYAIQNNYYLEK 280 (456)
T ss_dssp EECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCC-CHHHHHHHHHHHTCCEEEECTTTTTCHHHHHH
T ss_pred EEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcC-CHHHHHHHHHHcCCcEEEECcchHHHHHhhHH
Confidence 9987 567899999999999 421 247888888999 4699998 899999999999999999987632111110
Q ss_pred CCCcc--CCcEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHH
Q 001989 778 SPGYI--GADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 778 ~pg~~--g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
....+ ++|++++|+||+++ +++|+|+++++ +++.+.+...+.|. ... .. +.
T Consensus 281 ~~~~~~~~~D~~~~s~hK~~~-----~p~g~G~l~~~~~~~~~~l~~~~~g~---------------~~~----~~--~~ 334 (456)
T 2z67_A 281 LKKAFKYRVDAVVSSSDKNLL-----TPIGGGLVYSTDAEFIKEISLSYPGR---------------ASA----TP--VV 334 (456)
T ss_dssp HHHHHTSCCSEEEEEHHHHHC-----CCSSCEEEEESCHHHHHHHHTTSCSC---------------BCS----HH--HH
T ss_pred HHHhhCCCCCEEEEcCCCCcC-----CCCCeEEEEEcCHHHHhhcCcCCCCC---------------CCC----CH--HH
Confidence 01112 79999999999874 34578999995 45544332211110 001 11 33
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccC---CeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001989 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHY---PILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 855 ~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~---~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~G 931 (985)
..|+.+..++.+|++++.++..++++++.++|++.. ++...++. +.+.+.+.. .+ ...++.++|.++|
T Consensus 335 ~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~----~~v~~~~~~----~~-~~~~l~~~L~~~g 405 (456)
T 2z67_A 335 NTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE----SPIASCISV----NS-DPVEIAAKLYNLR 405 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC----CSSEEEEEC----SS-CHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC----CeEEEEEec----cc-HHHHHHHHHHHcC
Confidence 456777888899999999999999999999997631 22222221 223344410 01 1578999999998
Q ss_pred Cc---cC-------CCCC-C-CCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 932 FH---GP-------TMSW-P-VPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 932 i~---~~-------~~~~-p-~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
+. +. ...+ + ..+.+|+|++..+|++|||+ +++.|+++
T Consensus 406 i~~~rv~~~~g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~--~l~~L~~~ 454 (456)
T 2z67_A 406 VTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVN--SVSKLEKI 454 (456)
T ss_dssp EESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHHHH--HHHHHHTC
T ss_pred CCcceEEeecCccccccccccCcchhhhhhhcCCCHHHHHH--HHHHHHHH
Confidence 62 21 0111 1 14799999999999999999 66666654
No 21
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.91 E-value=7.6e-23 Score=232.52 Aligned_cols=315 Identities=12% Similarity=0.114 Sum_probs=216.1
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHH---HCCc
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA---MCGM 702 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~---~~G~ 702 (985)
..+..+..+++++++++++|.+... ++.++|++|+..++.++.... ..++++||++...|+++...+. ..|+
T Consensus 38 ~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~----~~~gd~vi~~~~~~~~~~~~~~~~~~~g~ 113 (382)
T 4hvk_A 38 GFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRN----ARKGKHILVSAVEHMSVINPAKFLQKQGF 113 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHH----GGGCCEEEEETTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhh----cCCCCEEEECCCCcHHHHHHHHHHHhcCC
Confidence 3566778889999999999998643 556677777765555443111 0267899999988877765543 4699
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCc
Q 001989 703 KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY 781 (985)
Q Consensus 703 ~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~ 781 (985)
+++.+|+++++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+++|+ +++|++|..+...+ ....
T Consensus 114 ~~~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~-li~D~a~~~~~~~~-~~~~ 187 (382)
T 4hvk_A 114 EVEYIPVGKYGEVDVSFIDQKLR---DDTILVSVQHANNEIGTIQ-PVEEISEVLAGKAA-LHIDATASVGQIEV-DVEK 187 (382)
T ss_dssp EEEEECBCTTSCBCHHHHHHHCC---TTEEEEECCSBCTTTCBBC-CHHHHHHHHSSSSE-EEEECTTTBTTBCC-CHHH
T ss_pred EEEEeccCCCCCcCHHHHHHHhc---cCceEEEEECCCCCceeeC-CHHHHHHHHHHcCE-EEEEhHHhcCCCCC-Cchh
Confidence 99999999889999999999997 78999999998 5799998 89999999999999 99999986432221 2234
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~ 861 (985)
+++|++++|+||++ |++|+|+++++++. .+.....+.... .....++.+ ...+.+..+.+.
T Consensus 188 ~~~d~~~~s~~K~~------g~~g~g~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~--------~~~~~~~~~al~ 248 (382)
T 4hvk_A 188 IGADMLTISSNDIY------GPKGVGALWIRKEA--KLQPVILGGGQE---NGLRSGSEN--------VPSIVGFGKAAE 248 (382)
T ss_dssp HTCSEEEEESGGGT------SCTTCEEEEEETTC--CCCCSSCSSCTG---GGTSCSCCC--------HHHHHHHHHHHH
T ss_pred cCCCEEEEeHHHhc------CCCceEEEEEcCcc--CcCcccccCCCc---CccccCCcC--------HHHHHHHHHHHH
Confidence 57999999999975 34578899888654 222222111000 000011111 111222223333
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCC-ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-C
Q 001989 862 MMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-W 939 (985)
Q Consensus 862 ~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~-~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~ 939 (985)
.+ .+++++..++..++++++.+.|++...+....+.. ...+.+.+.++ +.+..++.+.|.++||.+.... +
T Consensus 249 ~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~v~~g~~~ 321 (382)
T 4hvk_A 249 IT-AMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFS------YIEGESIVLSLDMAGIQASTGSAC 321 (382)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEET------TCCHHHHHHHHHHTTCBCBCC---
T ss_pred HH-HhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEEC------CCCHHHHHHHHHHCCEEEeeCCcc
Confidence 22 35778888888999999999998632332222211 11123444543 4678899999999999875321 0
Q ss_pred --C------------C-----CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccCCc
Q 001989 940 --P------------V-----PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMGRQ 979 (985)
Q Consensus 940 --p------------~-----~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~~~ 979 (985)
+ . .+.+|++++..+|+||+++ +++.|++++++++...+
T Consensus 322 ~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~--~~~~l~~~~~~~~~~~~ 378 (382)
T 4hvk_A 322 SSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDR--LLEVLPGVIERLRSMSP 378 (382)
T ss_dssp -----CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHH--HHHHHHHHHHHHHHTCC
T ss_pred CCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHH--HHHHHHHHHHHHHhhcc
Confidence 0 1 4789999999999999999 88999999988765443
No 22
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.91 E-value=1.9e-23 Score=245.76 Aligned_cols=306 Identities=11% Similarity=0.070 Sum_probs=224.4
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEE-----EEe
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKV-----VVS 286 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v-----~~v 286 (985)
...++++++|+++|+++.++.+++|+|.++..++.++.-..++|++||++...|+++..++...++..|+++ ...
T Consensus 112 ~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~ 191 (465)
T 3e9k_A 112 GDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIK 191 (465)
T ss_dssp TTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEEC
T ss_pred hHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEe
Confidence 344578899999999988999999999888877765521113577899999999999988876666667663 232
Q ss_pred --------Cchhhhc-cC---CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEE
Q 001989 287 --------DLKDIDY-KS---GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIV 352 (985)
Q Consensus 287 --------~~~~l~~-l~---~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~ 352 (985)
+++++++ ++ +++++|++.+| |++|.+.|+++|.++||++|+++++| ..++.|.+. ...++|+|++
T Consensus 192 ~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D-~a~~~g~~~~~~~~~~~D~~ 270 (465)
T 3e9k_A 192 PREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFD-LAHAVGNVELYLHDWGVDFA 270 (465)
T ss_dssp CCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEE-CTTTTTTSCCCHHHHTCCEE
T ss_pred cCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEE-hhhhcCCcCCchhhcCCCEE
Confidence 2356666 64 68999999997 68999999999999999999999995 345666543 2247899999
Q ss_pred EecC-ccccccCCCCCCc-EEEEEEchhhHhcCCCceeeeeecCCCCcceeee--cccccccccccccCCCccchhHHHH
Q 001989 353 VGSA-QRFGVPMGYGGPH-AAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVA--MQTREQHIRRDKATSNICTAQALLA 428 (985)
Q Consensus 353 v~s~-k~lg~P~~~GGP~-~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~--l~tre~~irre~atsni~t~~~l~a 428 (985)
++++ |.| .|||+ +|++++++++.+.+.+.+.||..... ...|.+. ........|++.||+|+ ....+
T Consensus 271 ~~s~~K~l-----~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~gt~~~---~~~~a 341 (465)
T 3e9k_A 271 CWCSYKYL-----NAGAGGIAGAFIHEKHAHTIKPALVGWFGHEL-STRFKMDNKLQLIPGVCGFRISNPPI---LLVCS 341 (465)
T ss_dssp EECSSSTT-----CCCTTCCCEEEECGGGTTTSCCSSCCGGGBCH-HHHTTCCSCCCBCSSGGGGCCSCCCH---HHHHH
T ss_pred EECccccc-----ccCCCceEEEEEcHHHHhhcCCcccCccCCCC-CcccccCCCcCcCCChHHhccCCccH---HHHHH
Confidence 9998 666 24554 68999999999888877777631100 0012111 11122334556788887 34555
Q ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----------CCeEEcCCC----CcceEEEecCC-HHHHHHHHH
Q 001989 429 NMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----------GTVEVQGLP----FFDTVKVKCAD-AHAIASAAY 493 (985)
Q Consensus 429 ~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----------g~~~~~~~~----~~~~~~~~~~~-~~~v~~~L~ 493 (985)
+.+++ .++...|++++.++..++++|+.+.|+++ .+++++.+. ....+.|..+. +.++.+.|.
T Consensus 342 ~~aal--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~~~~l~~~L~ 419 (465)
T 3e9k_A 342 LHASL--EIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVPNKDVFQELE 419 (465)
T ss_dssp HHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECCTTCCHHHHHH
T ss_pred HHHHH--HHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecCCHHHHHHHHH
Confidence 55555 44555689999999999999999999883 238887532 13345565554 678999999
Q ss_pred HcCceeeeecCCeEEEEe-ccCCCHHHHHHHHHHHhC
Q 001989 494 KIEMNLRVVDSNTVTASF-DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 494 ~~GI~~~~~~~~~lris~-t~~~t~edId~li~aL~~ 529 (985)
++||.+....++.+|+|+ +.++|++||++++++|.+
T Consensus 420 ~~Gi~v~~~~~~~iRis~~~~~~t~edi~~~~~~l~~ 456 (465)
T 3e9k_A 420 KRGVVCDKRNPNGIRVAPVPLYNSFHDVYKFTNLLTS 456 (465)
T ss_dssp TTTEECEEETTTEEEEBCCTTTCCHHHHHHHHHHHHH
T ss_pred HCCEEEecCCCCEEEEeCcccCCCHHHHHHHHHHHHH
Confidence 999988755578999999 799999999999999974
No 23
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.91 E-value=7.5e-23 Score=233.15 Aligned_cols=317 Identities=12% Similarity=0.074 Sum_probs=216.4
Q ss_pred hHHHHHHHHHHHHHHHhCCCc--cc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCccc--HHHHHHCCcE
Q 001989 629 GYQEMFNNLGEWLCTITGFDS--FS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN--PATAAMCGMK 703 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~--~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~--~~~a~~~G~~ 703 (985)
...+...++++++++++|.+. .. ++.++|++|+. ++.++ .+++|+||+++..|... ...++..|++
T Consensus 32 ~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~--------~~~gd~vi~~~~~~~~~~~~~~~~~~g~~ 102 (384)
T 3zrp_A 32 EFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSL--------LKPNDKILVVSNGVFGDRWEQIFKRYPVN 102 (384)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGG--------CCTTCEEEEECSSHHHHHHHHHHTTSSCE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhh--------cCCCCEEEEecCCcchHHHHHHHHHcCCc
Confidence 345677899999999999986 43 55677777765 44322 14788999987655332 2334678999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
++.+|+++++.+|+++|++++++ .++++|++++| |++|.+. |+++|.++|+++|+++|+|++|..+...+ ....+
T Consensus 103 ~~~v~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~~~~~~-~~~~~ 178 (384)
T 3zrp_A 103 VKVLRPSPGDYVKPGEVEEEVRK--SEYKLVALTHVETSTGVRE-PVKDVINKIRKYVELIVVDGVSSVGAEEV-KAEEW 178 (384)
T ss_dssp EEEECCSTTCCCCHHHHHHHHHH--SCEEEEEEESEETTTTEEC-CHHHHHHHHGGGEEEEEEECTTTTTTSCC-CTTTT
T ss_pred EEEecCCCCCCCCHHHHHHHHHh--CCCcEEEEeCCCCCCceEC-cHHHHHHHHHhcCCEEEEECcccccCccc-ccccc
Confidence 99999988899999999999983 27999999998 5799998 89999999999999999999985332221 23456
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcC-CC-CccccCCCC--CC---CCCC--CCCCCCCCcchhhhHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFL-PS-HPVVSTGGI--PA---PEKS--QPLGTIAAAPWGSALIL 853 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~l-p~-~~~g~~~~~--~~---~~~~--~~~~~i~s~~~g~~~~~ 853 (985)
++|++++|+||+|+ |++|+|++++++++.+.+ .. ...+...+. .. ...+ ..+ ...+. +....
T Consensus 179 ~~d~~~~s~~K~~~-----~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~---~~~~~ 249 (384)
T 3zrp_A 179 NVDVYLTASQKALG-----SAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAA-YFATP---PVHVI 249 (384)
T ss_dssp TCSEEEEETTSTTC-----CCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCC-CSSCC---CHHHH
T ss_pred CCCEEEecCccccc-----CCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCC-cCCCC---CHHHH
Confidence 89999999999984 346899999998765443 11 000000000 00 0000 000 00000 11122
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 854 ~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
.+..+.+..+..+++.+..++..++++++.+.|++ ++++..+.......+.+.+.++ +.+..++.+.|.++||
T Consensus 250 ~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi 323 (384)
T 3zrp_A 250 LQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLEIVARRPESYSNTVTGVILK------VADPQKVLAGTVNEGV 323 (384)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSCSSGGGBCSSEEEEECS------SSCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCeEccCcccccCccEEEEECC------CCCHHHHHHHHHHCCE
Confidence 22335556666667888888889999999999987 4444321100011222345554 3578899999999999
Q ss_pred ccCCCC-CCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 933 HGPTMS-WPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 933 ~~~~~~-~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.+.... .+. +.+||++...+|++||++ +++.|++++++++.
T Consensus 324 ~v~~g~~~~~-~~iRi~~~~~~~~e~i~~--~~~~l~~~l~~~~~ 365 (384)
T 3zrp_A 324 EFAPGVHPAF-KYFRIGHMGWVTPNDAII--AISVIERTLRKLGE 365 (384)
T ss_dssp CCEECCCTTC-CEEEEECCSSCCHHHHHH--HHHHHHHHHHHHTC
T ss_pred EEecCCCCCc-CEEEEeccccCCHHHHHH--HHHHHHHHHHHcCC
Confidence 875322 333 789999999999999999 88999999988765
No 24
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.91 E-value=1.8e-22 Score=230.39 Aligned_cols=315 Identities=16% Similarity=0.138 Sum_probs=218.7
Q ss_pred HHHHHHHHHHHHHHHhCCC-cc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcc--cHHHHHHCCcEEE
Q 001989 630 YQEMFNNLGEWLCTITGFD-SF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGT--NPATAAMCGMKIV 705 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~-~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~--~~~~a~~~G~~vv 705 (985)
..+..+++++++++++|.+ .. .++.++|++|+..++.++. .++++|++++..|.. +...++..|++++
T Consensus 51 ~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~ 122 (386)
T 2dr1_A 51 YRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGV--------SKGGKVLVTIIGAFGKRYKEVVESNGRKAV 122 (386)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHS--------CTTCEEEEEESSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhh--------cCCCeEEEEcCCchhHHHHHHHHHhCCceE
Confidence 3567889999999999997 33 4566778877755554431 367899998877755 4555678899999
Q ss_pred EEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCC
Q 001989 706 SVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGA 784 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~ 784 (985)
.+|+++++.+|+++|++++++. +++++|++++| |++|.+. |+++|.++|+++|+++|+|+++..+...+ ....+++
T Consensus 123 ~v~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~~~~~~-~~~~~~~ 199 (386)
T 2dr1_A 123 VLEYEPGKAVKPEDLDDALRKN-PDVEAVTITYNETSTGVLN-PLPELAKVAKEHDKLVFVDAVSAMGGADI-KFDKWGL 199 (386)
T ss_dssp EEECCTTCCCCHHHHHHHHHHC-TTCCEEEEESEETTTTEEC-CHHHHHHHHHHTTCEEEEECTTTBTTBCC-CTTTTTC
T ss_pred EEecCCCCCCCHHHHHHHHhcC-CCCcEEEEEeecCCcchhC-CHHHHHHHHHHcCCeEEEEccccccCccc-cccccCC
Confidence 9999888899999999999532 57899999987 5799998 89999999999999999999986433222 3455689
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCC-CccccCCCCC---C-CC-CCCCCCCCCCcchhhhHHHHHHHH
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS-HPVVSTGGIP---A-PE-KSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~-~~~g~~~~~~---~-~~-~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
|++++|+||+|+.| +|+|++++++++.+.+.. ...++..+.. . .. +...+++. +.....++.+
T Consensus 200 di~~~s~sK~~~~~-----~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~a~~~ 268 (386)
T 2dr1_A 200 DVVFSSSQKAFGVP-----PGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTP------PMPQVFGINV 268 (386)
T ss_dssp SEEEEETTSTTCCC-----SSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCC------CHHHHHHHHH
T ss_pred cEEEEeccccccCC-----CceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCC------CHHHHHHHHH
Confidence 99999999998532 258999999876544321 0001000000 0 00 00011111 1222333445
Q ss_pred HHHHhcHH-HHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCC-ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccC
Q 001989 859 YIAMMGSK-GLTEASKIAILNANYMAKRLEK-HYPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP 935 (985)
Q Consensus 859 ~l~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~-~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~ 935 (985)
.+..+..+ |+.+..++..++++++.+.|++ ++++.. +.+ ...+.+.+.++ .+.+..++.++|.++||.+.
T Consensus 269 ~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~gi~v~ 341 (386)
T 2dr1_A 269 ALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDILA--EPGHESPTITAVLTP-----PGIKGDEVYEAMRKRGFELA 341 (386)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSS--CTTCBCSSEEEEECC-----TTCCHHHHHHHHHHTTEECE
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCc--CccccCCceEEEEcC-----CCCCHHHHHHHHHHCCeEEe
Confidence 56665555 6777888889999999999987 444422 211 11222445554 24578899999999999875
Q ss_pred CCCCC-CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 936 TMSWP-VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 936 ~~~~p-~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
....+ ..+.+||+++.++|++|+++ +++.|++++++++
T Consensus 342 ~~~~~~~~~~iRi~~~~~~~~~~i~~--~~~~l~~~~~~~~ 380 (386)
T 2dr1_A 342 KGYGSVKEKTFRIGHMGYMKFEDIQE--MLDNLREVINELK 380 (386)
T ss_dssp ECCGGGTTTEEEEECCSSCCHHHHHH--HHHHHHHHHHHHH
T ss_pred cCccccCCCEEEEECCCCCCHHHHHH--HHHHHHHHHHHcC
Confidence 43222 24799999999999999999 8899999887754
No 25
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.91 E-value=1.4e-21 Score=223.20 Aligned_cols=314 Identities=17% Similarity=0.150 Sum_probs=225.3
Q ss_pred CCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcC
Q 001989 199 TPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADG 278 (985)
Q Consensus 199 ~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~ 278 (985)
+|+.........+.+.++++.+|+++|.++.++.+++|+|.++++++.++++ ++||+|+++...|+++...+..+++.
T Consensus 47 ~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~--~~gd~vl~~~~~~~~~~~~~~~~~~~ 124 (390)
T 1elu_A 47 GPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDW--HQGDEILLTDCEHPGIIAIVQAIAAR 124 (390)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCC--CTTCEEEEETTCCHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCC--CCCCEEEEecCcccHHHHHHHHHHHH
Confidence 4443333333346678899999999999888899999999888887776533 37899999999999998877655555
Q ss_pred CCeEEEEeCch----------hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHH----hCCcEEEEEecCccccCCC
Q 001989 279 FDIKVVVSDLK----------DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAH----ANGVKVVMATDLLALTILK 342 (985)
Q Consensus 279 ~gi~v~~v~~~----------~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~----~~galliV~a~~~~lg~l~ 342 (985)
.|.+++.++.+ +|++ +++++++|++.+| |.+|.+.|+++|.++|+ ++|+++++| +..+.|...
T Consensus 125 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~D-ea~~~g~~~ 203 (390)
T 1elu_A 125 FGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVD-GAQSAGSLP 203 (390)
T ss_dssp HCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEE-CTTTBTTBC
T ss_pred hCcEEEEEcCCCCCCccchHHHHHHhcCCCceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEE-cccccCCcC
Confidence 68888887652 4555 7788999999988 77999999999999999 999999995 344555432
Q ss_pred -CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeee-e-cCCCCcceeeecccccccccccccCC
Q 001989 343 -PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVS-I-DSSGKPALRVAMQTREQHIRRDKATS 418 (985)
Q Consensus 343 -~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t-~-d~~g~~~~~l~l~tre~~irre~ats 418 (985)
...++++|++++|. |++ +||+++|++++++++++.+.....|+. . +..+...|.+ .+...+...+|.
T Consensus 204 ~~~~~~~~d~~~~s~~K~~-----~~~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 274 (390)
T 1elu_A 204 LDFSRLEVDYYAFTGHKWF-----AGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGW----AEGGKRFEVATS 274 (390)
T ss_dssp CCTTTSCCSEEEEESSSTT-----CCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEE----CSGGGGGCCSCC
T ss_pred CChhhcCCCEEEccccccc-----cCCCceEEEEECHHhHhhcCCccccCCcccccccCccccc----ccchHhhCCCCC
Confidence 22467899999998 545 455678999999998888765544431 0 0001111221 111112234554
Q ss_pred CccchhHHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHHHHHHHhcCCCeEEcCC--CCcceEEEecC-C--HHHHHHHH
Q 001989 419 NICTAQALLANMAAMYAVYHGPEG-LKTIAQRVHGLAGTFALGLKKLGTVEVQGL--PFFDTVKVKCA-D--AHAIASAA 492 (985)
Q Consensus 419 ni~t~~~l~a~~aa~~l~~~g~~G-l~~i~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~~~~~~~~~-~--~~~v~~~L 492 (985)
|. ....++.+++ ..+..+| ++++.++..++.+++.+.|+++.|++++.+ ...+-+.+.++ + ..++.++|
T Consensus 275 ~~---~~~~a~~~al--~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 349 (390)
T 1elu_A 275 AY---PQYAGLLAAL--QLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKL 349 (390)
T ss_dssp CH---HHHHHHHHHH--HHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSSCHHHHHHHH
T ss_pred CH---HHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcCCCCCHHHHHHHH
Confidence 43 2333333443 3333445 889999999999999999999833988742 22334555654 2 78899999
Q ss_pred HHcCceeeeec-CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 493 YKIEMNLRVVD-SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 493 ~~~GI~~~~~~-~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++||.+.... ++.+|++++..+|++|+++++++|++
T Consensus 350 ~~~gi~v~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~ 387 (390)
T 1elu_A 350 EEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLAD 387 (390)
T ss_dssp HHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred HHCCEEEEecCCCCeEEEecccCCCHHHHHHHHHHHHh
Confidence 99999987653 57899999999999999999999975
No 26
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.91 E-value=7.9e-23 Score=235.53 Aligned_cols=318 Identities=14% Similarity=0.109 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHHHHhCCCccc--eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcc--cHHHHHHCCcEEE
Q 001989 630 YQEMFNNLGEWLCTITGFDSFS--LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGT--NPATAAMCGMKIV 705 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~~~--~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~--~~~~a~~~G~~vv 705 (985)
..+...++++++++++|.+... ++.++|++|+..++.++. .++++||+++..|.. +...++..|++++
T Consensus 44 ~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~ 115 (411)
T 3nnk_A 44 MTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAI--------RPGDKVLVPVFGRFGHLLCEIARRCRAEVH 115 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHC--------CTTCEEEEEECSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhc--------CCCCEEEEecCCchHHHHHHHHHHcCCeEE
Confidence 3466788999999999988643 455677877765554431 478899998876644 4445678899999
Q ss_pred EEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCC
Q 001989 706 SVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGA 784 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~ 784 (985)
.+|+++++.+|+++|++++++ +++++|++++| |++|.+. |+++|+++|+++|+++|+|++|..+...+ ....+++
T Consensus 116 ~v~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~Dea~~~~~~~~-~~~~~~~ 191 (411)
T 3nnk_A 116 TIEVPWGEVFTPDQVEDAVKR--IRPRLLLTVQGDTSTTMLQ-PLAELGEICRRYDALFYTDATASLGGNPL-ETDVWGL 191 (411)
T ss_dssp EEECCTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEEC-CCTTHHHHHHHHTCEEEEECTTTBTTBCC-CTTTTTC
T ss_pred EEecCCCCCCCHHHHHHHHhh--CCCeEEEEeCCCCCcceec-cHHHHHHHHHHcCCEEEEECCcccCCccc-chhccCC
Confidence 999988899999999999983 27889999997 5799998 89999999999999999999986432222 3456689
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCC------CccccC-----CCCCC-C--C--------CCCCCCCC
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS------HPVVST-----GGIPA-P--E--------KSQPLGTI 842 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~------~~~g~~-----~~~~~-~--~--------~~~~~~~i 842 (985)
|++++++||+|+ |++|+|++++++++.+.+.. .+.|.. ....+ . . ..... ..
T Consensus 192 d~~~~s~~K~l~-----~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~-~~ 265 (411)
T 3nnk_A 192 DAVSAGMQKCLG-----GPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERL-NH 265 (411)
T ss_dssp SEEECCSTTTTC-----CCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCC-CC
T ss_pred cEEEecCccccC-----CCCceEEEEECHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccC-CC
Confidence 999999999974 44578999998765432211 011110 00000 0 0 00000 00
Q ss_pred CCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHH
Q 001989 843 AAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPE 921 (985)
Q Consensus 843 ~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~ 921 (985)
.+. +...+.+..+.+..+..+|+++..++..++++++.+.|++ ++.+..+ +.....+.+.+.++ .+.+..
T Consensus 266 ~~~---~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~~~-----~~~~~~ 336 (411)
T 3nnk_A 266 HTE---ATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAMGLETFGD-LKHKMNNVLGVVIP-----QGINGD 336 (411)
T ss_dssp SCC---CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSC-GGGBCSSEEEEECC-----TTCCHH
T ss_pred CCC---CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeCCC-cccccccEEEEECC-----CCCCHH
Confidence 000 1222333345566666677888888899999999999987 4554321 10111223445553 256788
Q ss_pred HHHHHHHHC-CCccCCCCCC-CCCEEEEec-cCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 922 DVAKRLMDY-GFHGPTMSWP-VPGTLMIEP-TESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 922 ~v~~~L~~~-Gi~~~~~~~p-~~~~lris~-t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
++.++|.++ ||.+.....+ ..+.+||++ ...+|++||++ +++.|+++++++..
T Consensus 337 ~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~--~~~~l~~~l~~~~~ 392 (411)
T 3nnk_A 337 QARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMT--TLSALEAVLNYLKF 392 (411)
T ss_dssp HHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHH--HHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHH--HHHHHHHHHHHcCC
Confidence 999999886 9987532111 247999998 77789999999 88999999887643
No 27
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.90 E-value=3.1e-21 Score=220.36 Aligned_cols=347 Identities=14% Similarity=0.152 Sum_probs=242.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCccc--eecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHH
Q 001989 140 KFSKFDEGLTESQMIEHMQKLASMNKVYK--SFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQ 217 (985)
Q Consensus 140 ~lp~~~~~~se~e~~~~~~~l~~~n~~~~--~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q 217 (985)
+|| ..++++.+++++++++...+..+. .|+|.+..+ .++.+.+++.+. +.. ....+...++..+...+++
T Consensus 4 ~lp--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~a~~~~---~~~-~~~~~~~~~~~~~~~~~l~ 75 (397)
T 3f9t_A 4 NMQ--EKGVSEKEILEELKKYRSLDLKYEDGNIFGSMCSN--VLPITRKIVDIF---LET-NLGDPGLFKGTKLLEEKAV 75 (397)
T ss_dssp SCC--SSCCCHHHHHHHHHHHHTTSCCGGGTCBCSCSCCC--CCTHHHHHHHHH---TTC-CTTSGGGBHHHHHHHHHHH
T ss_pred cCC--CCCCCHHHHHHHHHHhhccCCCCCCCCeEEEecCC--CcHHHHHHHHHH---Hhh-cCCCcccChhHHHHHHHHH
Confidence 355 467899999999999987665543 677777433 333443344431 111 0112223347778888999
Q ss_pred HHHHHhcCCCCcceeeccchHHHHHHHHHHhhhh----------cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC
Q 001989 218 TMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ----------KGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD 287 (985)
Q Consensus 218 ~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~----------~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~ 287 (985)
+++++++|.+.+++.+++|||.+++.++.++... .++||+|+++...|+++...++. .|++++.++
T Consensus 76 ~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~v~ 151 (397)
T 3f9t_A 76 ALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREM----MDLEYIYAP 151 (397)
T ss_dssp HHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHH----HTCEEEEEC
T ss_pred HHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHH----cCceeEEEe
Confidence 9999999999988899999998888777654321 12489999999999999888764 378888876
Q ss_pred c--------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC---C---------CC
Q 001989 288 L--------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL---K---------PP 344 (985)
Q Consensus 288 ~--------~~l~~-l~~-~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l---~---------~~ 344 (985)
. ++|++ +++ ++++|++.+| |++|.+.|+++|.++|+++|+++++|. .++.+.+ . .+
T Consensus 152 ~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De-a~~~~~~~~~~~~~~~~~~~~~ 230 (397)
T 3f9t_A 152 IKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDA-AFGGLVIPFLDDKYKKKGVNYK 230 (397)
T ss_dssp BCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEC-TTGGGTGGGCCGGGCCTTCCCC
T ss_pred eCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEc-cccchhhhhccccccccccccc
Confidence 5 34555 666 8999999887 789999999999999999999999953 3432211 1 02
Q ss_pred Ccc--cceEEEecC-ccccccCCCCCCcEEEEEEchh-hHhcCC---CceeeeeecCCCCcceeeecccccccccccccC
Q 001989 345 GEL--GADIVVGSA-QRFGVPMGYGGPHAAFLATSQE-YKRMMP---GRIVGVSIDSSGKPALRVAMQTREQHIRRDKAT 417 (985)
Q Consensus 345 ~~~--GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~-~~~~lp---~~~vG~t~d~~g~~~~~l~l~tre~~irre~at 417 (985)
-.+ |+|+++.+. |.+++| .++|+++++++ +.+.+. +.+.+ +. + ....+|
T Consensus 231 ~~~~~~~~~~~~s~~K~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~------~~-----------~--~~~~~~ 286 (397)
T 3f9t_A 231 FDFSLGVDSITIDPHKMGHCP-----IPSGGILFKDIGYKRYLDVDAPYLTE------TR-----------Q--ATILGT 286 (397)
T ss_dssp CSGGGTCSEEECCTTTTTCCC-----SSCEEEEESSGGGGGGTCEECTTSSS------SE-----------E--CSSCSS
T ss_pred ccccccCCeEEEccccccCCC-----CCceEEEEeCHHHHHhhccCCccccC------CC-----------c--cccccc
Confidence 112 899999998 654332 34677777654 444441 11100 00 0 011233
Q ss_pred CCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCCHHHHHHHHHHcCc
Q 001989 418 SNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEM 497 (985)
Q Consensus 418 sni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~GI 497 (985)
.+.. ...+..+++ ..++.++++++.++..++++++.+.|+++| ++++.++..+.+.+..++..++.+.|.++||
T Consensus 287 ~~~~---~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi 360 (397)
T 3f9t_A 287 RVGF---GGACTYAVL--RYLGREGQRKIVNECMENTLYLYKKLKENN-FKPVIEPILNIVAIEDEDYKEVCKKLRDRGI 360 (397)
T ss_dssp CCSH---HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCBSSCCSSSEEEEECTTHHHHHHHHHHTTC
T ss_pred cccc---hHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHCC-CEEEcCCCccEEEEEeCCHHHHHHHHHhCCe
Confidence 3321 233333333 455677889999999999999999999996 8876555555666776667889999999999
Q ss_pred eeeeec-CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 498 NLRVVD-SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 498 ~~~~~~-~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.... ++.+|++++..+|++|+++++++|.+
T Consensus 361 ~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~ 393 (397)
T 3f9t_A 361 YVSVCNCVKALRIVVMPHIKREHIDNFIEILNS 393 (397)
T ss_dssp BCEECSSSSEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred EEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 887653 58999999999999999999999874
No 28
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.90 E-value=4.2e-22 Score=236.98 Aligned_cols=363 Identities=12% Similarity=0.045 Sum_probs=236.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCcc--ceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHH
Q 001989 138 SMKFSKFDEGLTESQMIEHMQKLASMNKVY--KSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLN 215 (985)
Q Consensus 138 ~~~lp~~~~~~se~e~~~~~~~l~~~n~~~--~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e 215 (985)
++++| ..+.++.+++++++++...+..+ ..|+|.-.-+...|+.+.+.+.+. +-.....| ..+.+..+...+
T Consensus 66 ~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~p~f~~~~~~~~~~~~~~~e~l~~~--~~~~~~~~--~~~p~~~~le~~ 139 (511)
T 3vp6_A 66 NLELS--DHPESLEQILVDCRDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTST--ANTNMFTY--EIAPVFVLMEQI 139 (511)
T ss_dssp CCCCC--SSCCCHHHHHHHHHHHHHTSCCTTSTTEESSSSCCCCHHHHHHHHHHHH--HCCCSSCT--TTCHHHHHHHHH
T ss_pred CCCCC--CCCCCHHHHHHHHHHHhhccCCCCCCCceEeecCCCcHHHHHHHHHHHH--hccCCCCc--ccCchHHHHHHH
Confidence 45677 46889999999999998776432 346664432222344443332211 00001122 245566677777
Q ss_pred HHHHHHHhcCCC--CcceeeccchHHHHHHHHHHhhhh-------cC----CCCEEEEcCCCChhHHHHHHHhhcCCCe-
Q 001989 216 FQTMIADLTGLP--MSNASLLDEGTAAAEAMAMCNNIQ-------KG----KKKTFIIASNCHPQTIDICITRADGFDI- 281 (985)
Q Consensus 216 ~q~~ia~L~g~~--~~~~sl~~~~ta~~ea~~~a~~~~-------~~----~g~~Vlv~~~~H~s~~~~~~~~a~~~gi- 281 (985)
...++++++|++ .+++.+++|||.++..++++.+.. .+ ++++|++++..|+++.+.++.+ +.|.
T Consensus 140 ~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~--g~g~~ 217 (511)
T 3vp6_A 140 TLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAAL--GFGTD 217 (511)
T ss_dssp HHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT--TSCGG
T ss_pred HHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHc--CCCCC
Confidence 888999999998 457889999998777666543321 11 4678999999999999998753 2332
Q ss_pred EEEEeCc--------hhhhc-cCCC------EeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCC-
Q 001989 282 KVVVSDL--------KDIDY-KSGD------VCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPP- 344 (985)
Q Consensus 282 ~v~~v~~--------~~l~~-l~~~------t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~- 344 (985)
+++.++. ++|++ +.++ +++|++++| |++|.++|+++|+++||++|++++||+ .++.+.+..+
T Consensus 218 ~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~-a~~~~~~~~~~ 296 (511)
T 3vp6_A 218 NVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDA-AWGGGLLMSRK 296 (511)
T ss_dssp GEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEE-TTGGGGGGCTT
T ss_pred cEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEc-cchhhHhhChh
Confidence 6666643 45665 5443 889999987 689999999999999999999999954 4455544222
Q ss_pred ------CcccceEEEecC-ccccccCCCCCCcEEEEEEchh-hHhc----CCCceeeeeecCCCCcceeeeccccccccc
Q 001989 345 ------GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQE-YKRM----MPGRIVGVSIDSSGKPALRVAMQTREQHIR 412 (985)
Q Consensus 345 ------~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~-~~~~----lp~~~vG~t~d~~g~~~~~l~l~tre~~ir 412 (985)
+..+||++++++ |+|++|. ++|+++++++ +++. .++.+.+...+..+. +.. .. ..
T Consensus 297 ~~~~~~g~~~aDsv~~~~hK~l~~p~-----g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~--~~~----~~--~~ 363 (511)
T 3vp6_A 297 HRHKLNGIERANSVTWNPHKMMGVLL-----QCSAILVKEKGILQGCNQMHASYLFQQDKHYDVS--YDT----GD--KA 363 (511)
T ss_dssp TGGGGTTGGGCSEEEECTTSTTCCCS-----CCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGG--GCC----GG--GS
T ss_pred hhhhccCCccCCEEEECcccccCCCc-----CeEEEEEeCHHHHHHHhccCCccccCcccccccc--cCc----cC--CC
Confidence 345789999999 6676663 4677888763 4433 233332211000000 000 00 00
Q ss_pred ccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC--CCCcceEEEecCC------
Q 001989 413 RDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG--LPFFDTVKVKCAD------ 484 (985)
Q Consensus 413 re~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~--~~~~~~~~~~~~~------ 484 (985)
-+.++.. ...++.++ +..+|.+|++++.+++.++++|+++.|+++.+++++. .+.+..++|+...
T Consensus 364 ~~~~r~~-----~al~~~~a--l~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~ 436 (511)
T 3vp6_A 364 IQCGRHV-----DIFKFWLM--WKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGV 436 (511)
T ss_dssp SCSSCCC-----CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGGSSC
T ss_pred CCCCCch-----HHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCcccccc
Confidence 0001110 11122222 4677899999999999999999999999984499986 5666677775311
Q ss_pred -------------HHHHHHHHHHcCcee-ee--ecC--CeEEEEe-ccCCCHHHHHHHHHHHhC
Q 001989 485 -------------AHAIASAAYKIEMNL-RV--VDS--NTVTASF-DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 -------------~~~v~~~L~~~GI~~-~~--~~~--~~lris~-t~~~t~edId~li~aL~~ 529 (985)
..++.++|.++|+.+ .. ... +.+|+++ +..+|.+|||+++++|.+
T Consensus 437 ~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~ 500 (511)
T 3vp6_A 437 PDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIER 500 (511)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 236889999998743 32 122 3599999 789999999999999874
No 29
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.90 E-value=2.6e-22 Score=231.64 Aligned_cols=317 Identities=12% Similarity=0.065 Sum_probs=216.5
Q ss_pred HHHHHHHHHHHHHHHhCCCccc-e-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcc--cHHHHHHCCcEEE
Q 001989 630 YQEMFNNLGEWLCTITGFDSFS-L-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGT--NPATAAMCGMKIV 705 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~~~-~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~--~~~~a~~~G~~vv 705 (985)
..+...++++++++++|.+... + +.++|++|+..++.++ ..++|+||+++..|.. ....++..|++++
T Consensus 42 ~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l--------~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~ 113 (416)
T 3isl_A 42 FTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASV--------IEPEDDVLIPIYGRFGYLLTEIAERYGANVH 113 (416)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHH--------CCTTCEEEEEESSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHh--------cCCCCEEEEecCCcccHHHHHHHHhcCCeeE
Confidence 3566789999999999988653 3 5677777775554433 1478999998776554 3344678899999
Q ss_pred EEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCC
Q 001989 706 SVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGA 784 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~ 784 (985)
.+|+++++.+|+++|++++++ +++++|++++| |++|.+. |+++|.++|+++|+++++|++|..+...+ ....+++
T Consensus 114 ~v~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~~~~~~-~~~~~~~ 189 (416)
T 3isl_A 114 MLECEWGTVFDPEDIIREIKK--VKPKIVAMVHGETSTGRIH-PLKAIGEACRTEDALFIVDAVATIGGCEV-KVDEWKI 189 (416)
T ss_dssp EEECCTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEEC-CCHHHHHHHHHTTCEEEEECTTTTTTSCC-CTTTTTC
T ss_pred EEecCCCCCCCHHHHHHHHhh--CCCcEEEEEccCCCCceec-CHHHHHHHHHHcCCEEEEECCccccCCCc-chhhcCC
Confidence 999998899999999999973 36789999998 5799998 89999999999999999999985332221 3345689
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCc---ccc------------CCCC---CC---C---CCCCCCC
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHP---VVS------------TGGI---PA---P---EKSQPLG 840 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~---~g~------------~~~~---~~---~---~~~~~~~ 840 (985)
|++++++||+++ |++|+|++++++++.+.+.... .|| +... .. + ......
T Consensus 190 d~~~~s~~K~l~-----g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~- 263 (416)
T 3isl_A 190 DAAIGGTQKCLS-----VPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRL- 263 (416)
T ss_dssp SEEECCSSSTTC-----CCSSEEEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCC-
T ss_pred CEEEecCccccC-----CCCCeEEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCC-
Confidence 999999999974 4458999999987653332100 011 0000 00 0 000000
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCC-ceeeEEEEEecCccccCCC
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNG-TVAHEFIVDLRGLKNTAGI 918 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~-~~~~~~iv~~~~~~~~~g~ 918 (985)
...+. +.....+..+.+..+..+|+++..++..++++++.+.|++ ++.+.. +.+ ...+.+.+.++ .+.
T Consensus 264 ~~~~~---~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~~~~~~~~~~-----~~~ 333 (416)
T 3isl_A 264 NHHTE---ATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLRLFG--DDSCKMPVVTCVEIP-----GGI 333 (416)
T ss_dssp CSSCC---CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCS--CGGGBCTTEEEEECC-----TTC
T ss_pred CCCCC---CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEecc--CccccCCcEEEEeCC-----CCC
Confidence 00010 1122233345566666667888888899999999999987 444432 111 11122345543 256
Q ss_pred CHHHHHHHHHHC-CCccCCCCCC-CCCEEEEeccCCCCHHH-HHHHHccCChhHHHHhhcc
Q 001989 919 EPEDVAKRLMDY-GFHGPTMSWP-VPGTLMIEPTESESKSW-TGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 919 ~~~~v~~~L~~~-Gi~~~~~~~p-~~~~lris~t~~~t~ee-Id~~~~~~~l~~~~~~~~~ 976 (985)
+..++.+.|.++ ||.+.....+ .++.+||+++..++.+| |++ +++.|+++++++..
T Consensus 334 ~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~--~~~~l~~~~~~~~~ 392 (416)
T 3isl_A 334 DGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLF--VLAGLEAVLLRHNA 392 (416)
T ss_dssp CHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHH--HHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHH--HHHHHHHHHHHcCC
Confidence 788999999887 9987643222 35899999988777777 999 88999999887643
No 30
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.90 E-value=4e-21 Score=222.47 Aligned_cols=315 Identities=12% Similarity=0.103 Sum_probs=216.0
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH---HHCCc
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA---AMCGM 702 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a---~~~G~ 702 (985)
..+..+...++++++++++|.+... ++.++|++|++.++.++..+. . .++++|+++...|+.+...+ ...|+
T Consensus 63 ~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l~~~~---~-~~gd~Vl~~~~~~~~~~~~~~~~~~~g~ 138 (423)
T 3lvm_A 63 GWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFY---Q-KKGKHIITSKTEHKAVLDTCRQLEREGF 138 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHH---T-TTCCEEEEETTSCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHHHHHhh---c-cCCCEEEECCccchHHHHHHHHHHHcCC
Confidence 3456677889999999999998643 556777888876666554322 1 25789999988777665554 45699
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCc
Q 001989 703 KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY 781 (985)
Q Consensus 703 ~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~ 781 (985)
+++.+|+++++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+++|+++++|+++..+... .....
T Consensus 139 ~~~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~Dea~~~~~~~-~~~~~ 213 (423)
T 3lvm_A 139 EVTYLAPQRNGIIDLKELEAAMR---DDTILVSIMHVNNEIGVVQ-DIAAIGEMCRARGIIYHVDATQSVGKLP-IDLSQ 213 (423)
T ss_dssp EEEEECCCTTSCCCHHHHHHHCC---TTEEEEECCSBCTTTCBBC-CHHHHHHHHHHHTCEEEEECTTTTTTSC-CCTTT
T ss_pred EEEEeccCCCCccCHHHHHHhcC---CCcEEEEEeCCCCCCcccc-CHHHHHHHHHHcCCEEEEEhhhhcCCCC-cChhh
Confidence 99999998899999999999997 78999999988 4799998 8999999999999999999998543221 23445
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~ 861 (985)
+++|++++|+||++ |++|+|+++++++....+.....+.... .... .+.. +...+.++.+.+.
T Consensus 214 ~~~di~~~s~sK~~------g~~g~G~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~------~~~~~~a~~~al~ 276 (423)
T 3lvm_A 214 LKVDLMSFSGHKIY------GPKGIGALYVRRKPRVRIEAQMHGGGHE---RGMR--SGTL------PVHQIVGMGEAYR 276 (423)
T ss_dssp SCCSEEEEESTTTT------SCSSCEEEEECBTTBCCCCCSSCSSCTT---TTTC--CSCC------CHHHHHHHHHHHH
T ss_pred cCCCEEEechHHhc------CCCCeEEEEEeccccCCCCccccCCccc---cccc--CCCC------CHHHHHHHHHHHH
Confidence 68999999999965 3456899999977665554332221100 0000 1111 1111222223344
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCC-ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC--
Q 001989 862 MMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-- 938 (985)
Q Consensus 862 ~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~-~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-- 938 (985)
.+.. .+.+..++..++++++.+.|++...+...++.. ...+.+.+.+. +.+..++.+.|.+ +.+..-.
T Consensus 277 ~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~--i~v~~g~~~ 347 (423)
T 3lvm_A 277 IAKE-EMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFN------YVEGESLIMALKD--LAVSSGSAC 347 (423)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTBCTTEEEEEET------TSCHHHHHHHTTT--EECBCCCC-
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEeC------CCCHHHHHHHHhh--heeccCccc
Confidence 4333 366777788889999999997632332222211 11122344443 4578889998876 5443210
Q ss_pred -------------CCC-----CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccCC
Q 001989 939 -------------WPV-----PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMGR 978 (985)
Q Consensus 939 -------------~p~-----~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~~ 978 (985)
+++ .+.+||+++..+|++||++ +++.|++++++++...
T Consensus 348 ~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~--~~~~l~~~~~~~~~~~ 403 (423)
T 3lvm_A 348 TSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDY--TIELVRKSIGRLRDLS 403 (423)
T ss_dssp ----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHH--HHHHHHHHHHHHHTSS
T ss_pred cCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHH--HHHHHHHHHHHhhccC
Confidence 011 3789999999999999999 8899999998876543
No 31
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.90 E-value=1.1e-21 Score=233.16 Aligned_cols=358 Identities=13% Similarity=0.055 Sum_probs=237.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCc--cceecCCCCCCCCCcHHHHHHHHhCCcccccc-CCCh--hhHhhhHHHHH
Q 001989 139 MKFSKFDEGLTESQMIEHMQKLASMNKV--YKSFIGMGYYNTHVPPVILRNIMENPAWYTQY-TPYQ--AEIAQGRLESL 213 (985)
Q Consensus 139 ~~lp~~~~~~se~e~~~~~~~l~~~n~~--~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~-~pyq--~e~sqg~l~~i 213 (985)
.++| .++.++.+++++++++...+.. ...|++....+ ..|..+.. ++++++ ++++ .+.+.+..+..
T Consensus 64 ~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~------~~l~~~~n~~~~~~~~~~~~~~le 134 (504)
T 2okj_A 64 LELS--DHPESLEQILVDCRDTLKYGVRTGHPRFFNQLSTG-LDIIGLAG------EWLTSTANTNMFTYEIAPVFVLME 134 (504)
T ss_dssp CCCC--SSCCCHHHHHHHHHHHHHTSCCTTCTTEESSSSCC-CCHHHHHH------HHHHHHHCCBSSCTTTCHHHHHHH
T ss_pred CCCC--CCCCCHHHHHHHHHHHhhccCCCCCCCEEEEccCC-CCHHHHHH------HHHHHhhccCCCchhhChHHHHHH
Confidence 3566 4789999999999998776542 23355433211 23433321 233333 3332 34455555666
Q ss_pred HHHHHHHHHhcCCC--CcceeeccchHHHHHHHHHHhhhh-----cCCC-----C-EEEEcCCCChhHHHHHHHhhcCCC
Q 001989 214 LNFQTMIADLTGLP--MSNASLLDEGTAAAEAMAMCNNIQ-----KGKK-----K-TFIIASNCHPQTIDICITRADGFD 280 (985)
Q Consensus 214 ~e~q~~ia~L~g~~--~~~~sl~~~~ta~~ea~~~a~~~~-----~~~g-----~-~Vlv~~~~H~s~~~~~~~~a~~~g 280 (985)
.+..+++++++|++ ..++.+++|||.++..++.+.+.. +++| + +|+++...|+++...++.+ +.|
T Consensus 135 ~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~--g~g 212 (504)
T 2okj_A 135 QITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAAL--GFG 212 (504)
T ss_dssp HHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT--TSC
T ss_pred HHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHc--CCC
Confidence 66779999999998 678999999998777666544320 0124 5 7999999999999998754 235
Q ss_pred e-EEEEeCc--------hhhhc-cCC------CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCC
Q 001989 281 I-KVVVSDL--------KDIDY-KSG------DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP 343 (985)
Q Consensus 281 i-~v~~v~~--------~~l~~-l~~------~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~ 343 (985)
. +++.++. ++|++ +++ ++++|++++| |.+|.++|+++|+++||++|++++||+ .++.+.+..
T Consensus 213 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~-a~~~~~~~~ 291 (504)
T 2okj_A 213 TDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDA-AWGGGLLMS 291 (504)
T ss_dssp GGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEE-TTGGGGGGC
T ss_pred cccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEeh-hhhhHHHhC
Confidence 4 6777654 34555 543 5899999998 679999999999999999999999954 233333221
Q ss_pred -------CCcccceEEEecC-ccccccCCCCCCcEEEEEEch-hhHh----cCCCceeeeeecCCCCcceeeeccccc-c
Q 001989 344 -------PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQ-EYKR----MMPGRIVGVSIDSSGKPALRVAMQTRE-Q 409 (985)
Q Consensus 344 -------~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~-~~~~----~lp~~~vG~t~d~~g~~~~~l~l~tre-~ 409 (985)
.+-.++|+++.++ |++++|. ++|++++++ ++++ ..++.+.+...+ .++.+++.++. +
T Consensus 292 ~~~~~~~~g~~~~D~i~~~~hK~~~~p~-----~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~ 362 (504)
T 2okj_A 292 RKHRHKLNGIERANSVTWNPHKMMGVLL-----QCSAILVKEKGILQGCNQMCAGYLFQPDKQ----YDVSYDTGDKAIQ 362 (504)
T ss_dssp TTTGGGGTTGGGCSEEEECTTSTTCCCS-----CCEEEEESSTTHHHHHHCCCCSSSCCSCCS----SCGGGCCGGGSSC
T ss_pred HhhHhhcCCcccCCEEEECchhhcCCCc-----ceEEEEEECHHHHHHHhcCCCccccCCccc----ccCcCCcccCCCC
Confidence 2234899999998 6555553 368999987 4554 345555442111 01112222221 4
Q ss_pred cccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC--CCCcceEEEec-CC--
Q 001989 410 HIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG--LPFFDTVKVKC-AD-- 484 (985)
Q Consensus 410 ~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~--~~~~~~~~~~~-~~-- 484 (985)
..||.. ...+++. +..+|.+|++++.+++.++++++.+.|+++.+++++. .+.+..|+|.. +.
T Consensus 363 ~~rr~~-------~l~~~a~-----l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~ 430 (504)
T 2okj_A 363 CGRHVD-------IFKFWLM-----WKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSL 430 (504)
T ss_dssp SSCBCC-------HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGG
T ss_pred CCCCcc-------HHHHHHH-----HHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccc
Confidence 445531 1223322 3556788999999999999999999999984499985 45566666653 21
Q ss_pred ----------------HHHHHHHHHHcCc-eeee--ecC--CeEEEEec-cCCCHHHHHHHHHHHhC
Q 001989 485 ----------------AHAIASAAYKIEM-NLRV--VDS--NTVTASFD-ETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 ----------------~~~v~~~L~~~GI-~~~~--~~~--~~lris~t-~~~t~edId~li~aL~~ 529 (985)
..++.++|.++|+ .+.. ... +.+|++++ .++|++|||+++++|.+
T Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~ 497 (504)
T 2okj_A 431 RGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIER 497 (504)
T ss_dssp SSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3578889999996 4432 222 57999996 89999999999999874
No 32
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.90 E-value=3.2e-21 Score=221.37 Aligned_cols=307 Identities=17% Similarity=0.123 Sum_probs=219.0
Q ss_pred hHHHHHHHHHHHHHHhcCC-CCcceeeccchHHHHHHHHHHhhh-hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001989 208 GRLESLLNFQTMIADLTGL-PMSNASLLDEGTAAAEAMAMCNNI-QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 208 g~l~~i~e~q~~ia~L~g~-~~~~~sl~~~~ta~~ea~~~a~~~-~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~ 285 (985)
+..+.+.++++.+|+++|. ++.++.+++|+|.++++++.+++. ..++||+|++++..|++....+...++..|++++.
T Consensus 64 ~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 143 (406)
T 1kmj_A 64 QATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRV 143 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEE
Confidence 3456678899999999999 677899999999888888776530 01378999999999999887776655556888888
Q ss_pred eCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEe
Q 001989 286 SDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVG 354 (985)
Q Consensus 286 v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~ 354 (985)
++. ++|++ +++++++|++.+| |++|.+.|+++|.++||++|+++++| +.++.|... ...++|+|++++
T Consensus 144 ~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-~~~~~g~~~~~~~~~~~d~~~~ 222 (406)
T 1kmj_A 144 IPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVD-GAQAVMHHPVDVQALDCDFYVF 222 (406)
T ss_dssp ECBCTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEE-CTTTTTTSCCCHHHHTCSEEEE
T ss_pred EecCCCCCcCHHHHHHHhccCCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEE-chhhcCCCCCcccccCCCEEEE
Confidence 764 45666 7889999999987 78999999999999999999999995 344555332 223578999999
Q ss_pred cC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeee-cCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 355 SA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSI-DSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 355 s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~-d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
|. |.| |+||+|++++++++.+.+.....|++. +.. .......+ .....+.+.+|+++ ....++.++
T Consensus 223 s~~K~~------g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~---~~~~a~~~a 290 (406)
T 1kmj_A 223 SGHKLY------GPTGIGILYVKEALLQEMPPWEGGGSMIATV-SLSEGTTW--TKAPWRFEAGTPNT---GGIIGLGAA 290 (406)
T ss_dssp EGGGTT------SCTTCEEEEECHHHHHHCCCSSCSTTSEEEE-ETTTEEEE--CCTTGGGCCSSCCH---HHHHHHHHH
T ss_pred Echhcc------CCCCcEEEEEeHHHHhhcCCcccCCCceeec-cccccccc--CCCchhccCCCCCH---HHHHHHHHH
Confidence 98 644 334589999999998887654444210 000 00000000 11122334455554 233333333
Q ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC-CcceEEEecCC--HHHHHHHHHHcCceeeeec------
Q 001989 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-FFDTVKVKCAD--AHAIASAAYKIEMNLRVVD------ 503 (985)
Q Consensus 433 ~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~~------ 503 (985)
+ .++...+++++.++..++++++.+.|+++.++++..+. ...-+.+..++ ..++.+.|.++||.+....
T Consensus 291 l--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~ 368 (406)
T 1kmj_A 291 L--EYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPL 368 (406)
T ss_dssp H--HHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHH
T ss_pred H--HHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEEEECCCCHHHHHHHHhhCCcEEEeccccchHH
Confidence 3 44444578899999999999999999998338887431 33345555554 7889999999999875421
Q ss_pred ------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 504 ------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 ------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++.+|++++.++|++|+++++++|..
T Consensus 369 ~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~ 400 (406)
T 1kmj_A 369 MAYYNVPAMCRASLAMYNTHEEVDRLVTGLQR 400 (406)
T ss_dssp HHHTTCSCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HHhcCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999974
No 33
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.90 E-value=1.1e-21 Score=226.61 Aligned_cols=306 Identities=14% Similarity=0.139 Sum_probs=220.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHh-hhh--cCCCCE-EEEcCCCChhHHHHHHHhhcCC--Ce
Q 001989 208 GRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCN-NIQ--KGKKKT-FIIASNCHPQTIDICITRADGF--DI 281 (985)
Q Consensus 208 g~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~-~~~--~~~g~~-Vlv~~~~H~s~~~~~~~~a~~~--gi 281 (985)
|..+.+.++++.+++++|.++.++.++.|+|.++++++.+. .+. .++||+ |+++...|+++...+..+++.. |+
T Consensus 68 ~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~ 147 (416)
T 1qz9_A 68 GWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGY 147 (416)
T ss_dssp SGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSC
T ss_pred hHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCc
Confidence 44467788999999999998778888899998887666543 220 026775 6777889999888776544333 88
Q ss_pred EEEEeC-chhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCC-CCcccceEEEecC-
Q 001989 282 KVVVSD-LKDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP-PGELGADIVVGSA- 356 (985)
Q Consensus 282 ~v~~v~-~~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~-~~~~GaDi~v~s~- 356 (985)
+++.++ +++|++ +++++++|++.+| |.+|.+.|+++|.++||++|+++++| ..++.|.... ..++|+|++++|.
T Consensus 148 ~~~~v~~~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-~a~~~g~~~~~~~~~~~d~~~~s~~ 226 (416)
T 1qz9_A 148 TLRLVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWD-LAHSAGAVPVDLHQAGADYAIGCTY 226 (416)
T ss_dssp EEEEESSGGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEE-CTTTTTTSCCCHHHHTCSEEEECSS
T ss_pred eEEEeCcHHHHHHHhCCCceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEE-ccccccCcCCChhhcCCCEEEecCc
Confidence 999988 688887 8889999999987 78999999999999999999999995 3455554322 2357899999998
Q ss_pred ccccccCCCCCCcE-EEEEEchhhHhcCCCceeeee-ecC--CCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 357 QRFGVPMGYGGPHA-AFLATSQEYKRMMPGRIVGVS-IDS--SGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 357 k~lg~P~~~GGP~~-G~l~~~~~~~~~lp~~~vG~t-~d~--~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
|+| +|||++ |++++++++.+.+.+...|+. ... +....|.+ .....+...+|.|+ ....++.++
T Consensus 227 K~l-----~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~a~~~a 294 (416)
T 1qz9_A 227 KYL-----NGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEP----SNGIARYLCGTQPI---TSLAMVECG 294 (416)
T ss_dssp STT-----CCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCB----CSSGGGGCCSCCCH---HHHHHHHHH
T ss_pred ccC-----CCCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccCC----CcchHHhcCCCCCH---HHHHHHHHH
Confidence 665 356777 999999998877755444431 000 00000110 00111223345554 333344444
Q ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEcCCC----CcceEEEecCCHHHHHHHHHHcCceeeeecC
Q 001989 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQGLP----FFDTVKVKCADAHAIASAAYKIEMNLRVVDS 504 (985)
Q Consensus 433 ~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~~~~----~~~~~~~~~~~~~~v~~~L~~~GI~~~~~~~ 504 (985)
+ ..+..+|++++.++..++++++.+.|+++ | +++..+. ....+.+..++..++.+.|.++||.+.....
T Consensus 295 l--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~~~~ 371 (416)
T 1qz9_A 295 L--DVFAQTDMASLRRKSLALTDLFIELVEQRCAAHE-LTLVTPREHAKRGSHVSFEHPEGYAVIQALIDRGVIGDYREP 371 (416)
T ss_dssp H--HHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSC-CEECSCSSGGGBCSEEEEECTTHHHHHHHHHTTTEECEEETT
T ss_pred H--HHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCC-eEEeCCCCHHHcCCEEEEecCCHHHHHHHHHhCCcEeccCCC
Confidence 4 55666789999999999999999999986 5 8886432 2345667766678899999999998865456
Q ss_pred CeEEEEec-cCCCHHHHHHHHHHHhC
Q 001989 505 NTVTASFD-ETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 505 ~~lris~t-~~~t~edId~li~aL~~ 529 (985)
+.+|++++ .++|++|+++++++|..
T Consensus 372 ~~lRis~~~~~~t~~~i~~~~~~l~~ 397 (416)
T 1qz9_A 372 RIMRFGFTPLYTTFTEVWDAVQILGE 397 (416)
T ss_dssp TEEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred CeEEEeCcccCCCHHHHHHHHHHHHH
Confidence 89999998 58999999999999974
No 34
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.90 E-value=2e-21 Score=220.79 Aligned_cols=292 Identities=16% Similarity=0.130 Sum_probs=216.1
Q ss_pred HhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhh-hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001989 205 IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI-QKGKKKTFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 205 ~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~-~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v 283 (985)
...+..+.+.++++.+++++|.++.++.+++|+|.+++.++.++.. ..++||+|+++...|+++...++.. +..|+++
T Consensus 37 ~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~-~~~g~~~ 115 (382)
T 4hvk_A 37 YGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFL-QKQGFEV 115 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHH-HHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHHHH-HhcCCEE
Confidence 4566778888999999999999988899999999888877766532 0138899999999999999887654 3468899
Q ss_pred EEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEE
Q 001989 284 VVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIV 352 (985)
Q Consensus 284 ~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~ 352 (985)
+.++. ++|++ +++++++|++.+| |++|.+.|+++|.++||++|+ +++| +.++.+... +...+|+|++
T Consensus 116 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D-~a~~~~~~~~~~~~~~~d~~ 193 (382)
T 4hvk_A 116 EYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHID-ATASVGQIEVDVEKIGADML 193 (382)
T ss_dssp EEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEE-CTTTBTTBCCCHHHHTCSEE
T ss_pred EEeccCCCCCcCHHHHHHHhccCceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEE-hHHhcCCCCCCchhcCCCEE
Confidence 88864 35666 7889999999887 789999999999999999999 8885 345555443 2245789999
Q ss_pred EecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 353 VGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 353 v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
+++.+|+. |++|+|+++++++. .+.+.+.|+ . +..+...+|.|. ....++.++
T Consensus 194 ~~s~~K~~-----g~~g~g~~~~~~~~--~~~~~~~~~------~-----------~~~~~~~~~~~~---~~~~~~~~a 246 (382)
T 4hvk_A 194 TISSNDIY-----GPKGVGALWIRKEA--KLQPVILGG------G-----------QENGLRSGSENV---PSIVGFGKA 246 (382)
T ss_dssp EEESGGGT-----SCTTCEEEEEETTC--CCCCSSCSS------C-----------TGGGTSCSCCCH---HHHHHHHHH
T ss_pred EEeHHHhc-----CCCceEEEEEcCcc--CcCcccccC------C-----------CcCccccCCcCH---HHHHHHHHH
Confidence 99984353 33457899988764 333222221 0 112233455554 344444444
Q ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC--C-cceEEEecCC--HHHHHHHHHHcCceeeeec----
Q 001989 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP--F-FDTVKVKCAD--AHAIASAAYKIEMNLRVVD---- 503 (985)
Q Consensus 433 ~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~--~-~~~~~~~~~~--~~~v~~~L~~~GI~~~~~~---- 503 (985)
+ .+ ..++++++.++..++++++.+.|++++++++...+ . .+.+.+..++ ..++.+.|.++||.++...
T Consensus 247 l--~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~ 323 (382)
T 4hvk_A 247 A--EI-TAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSS 323 (382)
T ss_dssp H--HH-HHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTCCHHHHHHHHHHTTCBCBCC-----
T ss_pred H--HH-HHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECCCCHHHHHHHHHHCCEEEeeCCccCC
Confidence 4 22 23688999999999999999999998448887432 1 2345566554 8899999999999875311
Q ss_pred -------------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 504 -------------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 -------------------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.+|++++..+|+||+++++++|++
T Consensus 324 ~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~ 368 (382)
T 4hvk_A 324 KTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPG 368 (382)
T ss_dssp ---CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999985
No 35
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.89 E-value=3.4e-22 Score=228.47 Aligned_cols=318 Identities=11% Similarity=0.091 Sum_probs=214.6
Q ss_pred HHHHHHHHHHHHHHhCCCcc--ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCc--ccHHHHHHCCcEEEE
Q 001989 631 QEMFNNLGEWLCTITGFDSF--SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHG--TNPATAAMCGMKIVS 706 (985)
Q Consensus 631 ~~~~~e~~~~la~l~G~~~~--~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg--~~~~~a~~~G~~vv~ 706 (985)
.+...++++++++++|.+.. .++.++|++|++.++.++. +++++||++...|. .....++..|++++.
T Consensus 55 ~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~ 126 (393)
T 3kgw_A 55 LQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLL--------EPGDSFLTGTNGIWGMRAAEIADRIGARVHQ 126 (393)
T ss_dssp HHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHC--------CTTCEEEEEESSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcC--------CCCCEEEEEeCCchhHHHHHHHHHcCCceEE
Confidence 45667889999999998753 3566778877755554431 47889999754331 113446788999999
Q ss_pred EcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCc
Q 001989 707 VGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGAD 785 (985)
Q Consensus 707 v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~D 785 (985)
+|.++++.+|+++|++++++ .++++|++++| |++|.+. |+++|.++|+++|+++++|++|..+...+ ....+++|
T Consensus 127 ~~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~De~~~~g~~~~-~~~~~~~d 202 (393)
T 3kgw_A 127 MIKKPGEHYTLQEVEEGLAQ--HKPVLLFLVHGESSTGVVQ-PLDGFGELCHRYQCLLLVDSVASLGGVPI-YMDQQGID 202 (393)
T ss_dssp EECCTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEEC-CCTTHHHHHHHTTCEEEEECTTTTTTSCC-CTTTTTCC
T ss_pred EeCCCCCCCCHHHHHHHHhh--CCCcEEEEeccCCcchhhc-cHHHHHHHHHHcCCEEEEECCccccCccc-chhhcCCC
Confidence 99988889999999999982 27889999998 5799998 89999999999999999999985332221 23456899
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCcccc---CCCC----CCC---CCCCCCCCCCCcchhhhHHHHH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVS---TGGI----PAP---EKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~---~~~~----~~~---~~~~~~~~i~s~~~g~~~~~~~ 855 (985)
++++++||+|+ |++|+|++++++++.+.+.....++ ..+. ..+ .......... +...+.+
T Consensus 203 ~~~~s~sK~~~-----~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~a 272 (393)
T 3kgw_A 203 IMYSSSQKVLN-----APPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTT-----PVTSLYC 272 (393)
T ss_dssp EEEEESSSTTC-----CCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCC-----CHHHHHH
T ss_pred EEEecCccccc-----CCCceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCC-----CHHHHHH
Confidence 99999999984 4467999999877654331110000 0000 000 0000000101 1122333
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC-CCc
Q 001989 856 SYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY-GFH 933 (985)
Q Consensus 856 a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~-Gi~ 933 (985)
+.+.+..+..+++.+..++..++++++.+.|++ ++++..+.........+.+.++ .+.+..++.++|.++ ||.
T Consensus 273 ~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~gi~ 347 (393)
T 3kgw_A 273 LRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTVP-----AGYNWRDIVSYVLDHFSIE 347 (393)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEEEECC-----TTBCHHHHHHHHHHHHCEE
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEEEeCC-----CCCCHHHHHHHHHHhCCEE
Confidence 345566666677888888899999999999987 4554321110011112234543 246788999999988 998
Q ss_pred cCCCCCC-CCCEEEEec-cCCCCHHHHHHHHccCChhHHHHhhccC
Q 001989 934 GPTMSWP-VPGTLMIEP-TESESKSWTGIVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 934 ~~~~~~p-~~~~lris~-t~~~t~eeId~~~~~~~l~~~~~~~~~~ 977 (985)
+.....+ ..+.+||++ ...+|++|+++ +++.|++++++++..
T Consensus 348 v~~g~~~~~~~~iRi~~~~~~~~~~~i~~--~~~~l~~~l~~~~~~ 391 (393)
T 3kgw_A 348 ISGGLGPTEERVLRIGLLGYNATTENVDR--VAEALREALQHCPKN 391 (393)
T ss_dssp CBCCCGGGTTTEEEEECCGGGCCHHHHHH--HHHHHHHHHHHSCBC
T ss_pred EeCCcccCCCCEEEEEecccCCCHHHHHH--HHHHHHHHHHhhhhc
Confidence 7643222 357999998 66679999999 889999999887653
No 36
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.89 E-value=3e-21 Score=219.83 Aligned_cols=307 Identities=16% Similarity=0.185 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH---HHCCcEEE
Q 001989 630 YQEMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA---AMCGMKIV 705 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a---~~~G~~vv 705 (985)
..+...++++++++++|.+... ++.++|++|+..++.++..+ + ..++++|++++..|..+...+ +..|++++
T Consensus 42 ~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~---~-~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~ 117 (384)
T 1eg5_A 42 ANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAET---F-EKRKRTIITTPIEHKAVLETMKYLSMKGFKVK 117 (384)
T ss_dssp HHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHH---T-TTTCCEEEECTTSCHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhh---c-cCCCCEEEECCCCchHHHHHHHHHHhcCCEEE
Confidence 3455778999999999987543 55577777776665555421 0 136789999988776665444 67899999
Q ss_pred EEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcC--CEEEEEccccccccCCCCCCcc
Q 001989 706 SVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNG--GQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~g--alliVD~a~~~~~~~l~~pg~~ 782 (985)
.+|+++++.+|+++|+++++ +++++|++++|+ ++|.+. |+++|.++|+++| +++|+|++|..+...+ ....+
T Consensus 118 ~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~-~~~~~ 192 (384)
T 1eg5_A 118 YVPVDSRGVVKLEELEKLVD---EDTFLVSIMAANNEVGTIQ-PVEDVTRIVKKKNKETLVHVDAVQTIGKIPF-SLEKL 192 (384)
T ss_dssp ECCBCTTSCBCHHHHHHHCC---TTEEEEEEESBCTTTCBBC-CHHHHHHHHHHHCTTCEEEEECTTTTTTSCC-CCTTT
T ss_pred EEccCCCCccCHHHHHHHhC---CCCeEEEEECCCCCccccc-CHHHHHHHHHhcCCceEEEEEhhhhcCCccc-Cchhc
Confidence 99998889999999999997 789999999985 699998 8999999999999 9999999986332111 22345
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccc--cCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHL--APFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l--~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
+.|++++|+||+++ .+|+|++++++++ .+.+.+. + .. ....+++. +.....++++++
T Consensus 193 ~~di~~~s~sK~~g------~~G~G~~~~~~~~~~~~~~~~~--~--~~-----~~~~~~~~------~~~~~~a~~~al 251 (384)
T 1eg5_A 193 EVDYASFSAHKFHG------PKGVGITYIRKGVPIRPLIHGG--G--QE-----RGLRSGTQ------NVPGIVGAARAM 251 (384)
T ss_dssp CCSEEEEEGGGGTS------CTTCEEEEECTTSCCCCSBCSS--C--TT-----TTTBCSCC------CHHHHHHHHHHH
T ss_pred CCCEEEecHHHhcC------CCceEEEEEcCCCccccccccC--c--cc-----ccccCCCC------ChHHHHHHHHHH
Confidence 78999999999863 3468999998875 2222110 0 00 00011111 112222334445
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-
Q 001989 861 AMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS- 938 (985)
Q Consensus 861 ~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~- 938 (985)
..+ .+++.+..++..++++++.+.|++ ++++.. .+.+.....+.+.++ +.+..++.+.|.++||.+....
T Consensus 252 ~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~v~~g~~ 323 (384)
T 1eg5_A 252 EIA-VEELSEAAKHMEKLRSKLVSGLMNLGAHIIT-PLEISLPNTLSVSFP------NIRGSTLQNLLSGYGIYVSTSSA 323 (384)
T ss_dssp HHH-HHTHHHHHHHHHHHHHHHHHHHHTTTCEECS-CTTSBCTTEEEEECT------TCCHHHHHHHHHHTTEECBC---
T ss_pred HHH-HHhHHHHHHHHHHHHHHHHHHhCCCCeEEeC-CcccCCCCEEEEEeC------CCCHHHHHHHHhhCCeEEecccc
Confidence 443 345677777888999999999987 443321 111111122334443 3568899999999999875411
Q ss_pred C--------------CC-----CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 939 W--------------PV-----PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 939 ~--------------p~-----~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+ +. .+.+||+++..+|++|+++ +++.|++++++++.
T Consensus 324 ~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~--~~~~l~~~~~~~~~ 378 (384)
T 1eg5_A 324 CTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDY--FLKKIEEILSFLDL 378 (384)
T ss_dssp ---------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHH--HHHHHHHHHHHC--
T ss_pred ccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHH--HHHHHHHHHHHHHh
Confidence 1 11 2689999999999999999 88999999988764
No 37
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.89 E-value=6.5e-22 Score=227.35 Aligned_cols=373 Identities=12% Similarity=0.062 Sum_probs=238.0
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCccc---------ccccccc-cccCCCccccccccccccccccCCCCchhhhhh
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCH---------SMIPLGS-CTMKLNATTEMMPVTWPSFANIHPFAPADQAQG 629 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~---------~~~~lG~-~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G 629 (985)
.+| +.|++|.+|+..|++++..|..... +.+ +|+ |++.+-...+-.. ....|...+|.. ..+++
T Consensus 22 ~~p--~~g~~~~~i~~~l~~~~~~d~~~~~~~~~~geregrv-~~~~~~~r~~g~~hg~~-~~~d~l~~~~~~--~~~~~ 95 (450)
T 3bc8_A 22 KCP--EDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRV-ASALVARRHYRFIHGIG-RSGDISAVQPKA--AGSSL 95 (450)
T ss_dssp CCC--SSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCC-SCHHHHHHTTTCCSCBC-C-------CCSB--HHHHH
T ss_pred cCC--ccCCCHHHHHHHHHHHhhCCCCccccccccCcccceE-ecccccCCccceecchh-HHHHHHHhCccc--cCCcH
Confidence 467 6899999999999999999866543 233 343 5554332222221 112333345522 33455
Q ss_pred HHHHHHHHHHHHHHHhCCCcc--ceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEE
Q 001989 630 YQEMFNNLGEWLCTITGFDSF--SLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVS 706 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~~--~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~ 706 (985)
..++.+++..++.+++|++.. .++++++|. ++.+++.++|.. . .++++||+++.+|.+..+++.+.|+..++
T Consensus 96 ~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~----~-~~~~~viv~r~aHkSv~kAl~l~Gl~p~~ 170 (450)
T 3bc8_A 96 LNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHK----R-PKAKYIIWPRIDQKSCFKSMVTAGFEPVV 170 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHH----C-TTCCEEEEECCCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchh----h-cCCCEEEEECCcHHHHHHHHHHcCCeeEE
Confidence 667788899999999999864 255555553 343444444532 1 23578999999999999999999999998
Q ss_pred EcC---CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCcc--ccccCHHHHHHHHHHcCCEEEEEccccccccCCCC--C
Q 001989 707 VGT---DAKGNINIEELRKAAEANRDNLSTLMVTYPSTHG--VYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS--P 779 (985)
Q Consensus 707 v~~---d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G--~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~--p 779 (985)
|++ ++.+.+|+++|+++|++++.+.+++++++|+++| .++ ||++|+++||++|++||||+||.. +..+.. |
T Consensus 171 v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~d-dl~~Ia~ia~~~gi~l~VD~A~G~-~~~~~~~l~ 248 (450)
T 3bc8_A 171 IENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPD-RLEELAVICANYDIPHVVNNAYGL-QSSKCMHLI 248 (450)
T ss_dssp ECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCC-CHHHHHHHHHHHTCCEEEECTTTT-TCHHHHHHH
T ss_pred EEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceec-CHHHHHHHHHHCCCeEEEECCCch-hhhhhHhHH
Confidence 876 4458899999999998654234566667787766 778 999999999999999999998742 111111 1
Q ss_pred -C--c-cCCcEEEeCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHH
Q 001989 780 -G--Y-IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 780 -g--~-~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
. . .++|+++.|.|||+..|++ .+++.+++ +..+.+...+.+ ..++ ++ ..
T Consensus 249 ~~a~~~~~AD~~v~S~HK~l~a~~~-----~~~l~~rd~~~~~~~~~~~~g---------------~~s~----Sp--sL 302 (450)
T 3bc8_A 249 QQGARVGRIDAFVQSLDKNFMVPVG-----GAIIAGFNEPFIQDISKMYPG---------------RASA----SP--SL 302 (450)
T ss_dssp HHHHHHSCCCEEEEEHHHHHSCCSS-----CEEEEESCHHHHHHHHHHSCS---------------CBCS----HH--HH
T ss_pred HHHhcccCCCEEEECCccCCCchhc-----cEEEEecCHHHHHHHHHHhhc---------------CCcc----cH--HH
Confidence 1 2 2799999999999977654 35676653 222222100000 0011 12 24
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-----cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH
Q 001989 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-----HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 855 ~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-----g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
..|+.+..+|.+|+++..++..+++++++++|++ +..++- .+.... ...+.++.+......+...+.-.+..
T Consensus 303 ~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~-~~~~~~--~~~~~l~~~~~~~~~D~tkl~i~~~~ 379 (450)
T 3bc8_A 303 DVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQ-TPHNPI--SLAMTLKTIDGHHDKAVTQLGSMLFT 379 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCC-CTTCSS--EEEEECTTTSSSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecC-CccCCC--cceeecccccccccCCCceeEEEecC
Confidence 5677777889999999999999999999999975 333321 110011 23343332211112345566666666
Q ss_pred CCCccCC-------------------C--CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 930 YGFHGPT-------------------M--SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 930 ~Gi~~~~-------------------~--~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.|+-... + ...-...+.+..+...+++|+++ ++++|++++.+.|+
T Consensus 380 ~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~--l~~~L~~~~~~~~~ 445 (450)
T 3bc8_A 380 RQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDL--FIKRLDKCLNIVRK 445 (450)
T ss_dssp TTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHH--HHHHHHHHHHHHHH
T ss_pred CCCccceeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHH--HHHHHHHHHHHHHh
Confidence 5542110 0 00113678888899999999999 77899998776654
No 38
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.89 E-value=1.8e-21 Score=221.65 Aligned_cols=311 Identities=13% Similarity=0.107 Sum_probs=211.7
Q ss_pred hhHHHHHHHHHHHHHHHhCCCcc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHH---HCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA---MCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~---~~G~~ 703 (985)
.+..+...++++++++++|.+.. .++.++|++|+..++.++..+.. .++++|++++..|.++...+. ..|++
T Consensus 39 ~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~ 114 (382)
T 4eb5_A 39 FKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNA----RKGKHILVSAVEHMSVINPAKFLQKQGFE 114 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHHG----GGCCEEEEETTCCHHHHHHHHHHTTTTCE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhcc----CCCCEEEECCCcchHHHHHHHHHHhCCcE
Confidence 45567788999999999998753 35567778887666665542111 256899999887876655543 36999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
++.+|+++++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+++|++ ++|++|..+...+ ....+
T Consensus 115 ~~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~-i~D~a~~~g~~~~-~~~~~ 188 (382)
T 4eb5_A 115 VEYIPVGKYGEVDVSFIDQKLR---DDTILVSVQHANNEIGTIQ-PVEEISEVLAGKAAL-HIDATASVGQIEV-DVEKI 188 (382)
T ss_dssp EEEECBCTTSCBCHHHHHHHCC---TTEEEEECCSBCTTTCBBC-CHHHHHHHHTTSSEE-EEECTTTBTTBCC-CHHHH
T ss_pred EEEeccCCCCccCHHHHHHHhc---CCCeEEEEeccCCCccccC-CHHHHHHHHHHCCCE-EEEcchhcCCccc-Ccccc
Confidence 9999998889999999999997 68999999988 4699998 899999999999999 9999986432211 12235
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
++|++++|+||+++ .+|+|+++++++. .+.....++... .... .++.. .....++.+.+..
T Consensus 189 ~~di~~~s~sK~~g------~~g~G~~~~~~~~--~l~~~~~~~~~~---~~~~--~~~~~------~~~~~~~~~al~~ 249 (382)
T 4eb5_A 189 GADMLTISSNDIYG------PKGVGALWIRKEA--KLQPVILGGGQE---NGLR--SGSEN------VPSIVGFGKAAEI 249 (382)
T ss_dssp TCSEEEEETGGGTC------CSSCEEEEEETTC--CCCCSSCSSCTG---GGTS--CSCCC------HHHHHHHHHHHHH
T ss_pred CCCEEEeehHHhcC------CCceEEEEEcccc--ccCceecCCCcc---cccc--CCCcc------HHHHHHHHHHHHH
Confidence 78999999999862 2368899888763 111111111000 0000 11111 1111222333443
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCC-ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC---
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS--- 938 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~-~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~--- 938 (985)
+. +++.+..++..++++++.+.|++..++.+.++.+ ...+.+.+.++ +.+..++.++|.++||.+....
T Consensus 250 ~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~v~~g~~~~ 322 (382)
T 4eb5_A 250 TA-MEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFS------YIEGESIVLSLDMAGIQASTGSACS 322 (382)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEET------TSCHHHHHHHHHHHTCBCBCCCGGG
T ss_pred HH-HhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeC------CcCHHHHHHHHHHCCEEEecccccc
Confidence 32 4677778888899999999998622332222211 11122445554 4578899999999999875421
Q ss_pred ------------CC-----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 939 ------------WP-----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 939 ------------~p-----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
++ ..+.+||+++..+|++|+++ +++.|++++++++.
T Consensus 323 ~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~--~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 323 SKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDR--LLEVLPGVIERLRS 375 (382)
T ss_dssp TSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHH--HHHHHHHHHHHHHH
T ss_pred CCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHH--HHHHHHHHHHHHHH
Confidence 01 14789999999999999999 88999999888775
No 39
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.89 E-value=3.8e-22 Score=234.17 Aligned_cols=370 Identities=11% Similarity=0.092 Sum_probs=244.2
Q ss_pred cccCCCCCH-HHHHHHHHHhCCCCHHHhhhhcCCCccccCCCCCCCCCCCCCHHHHHHHHHHHhcCCC-ccceecCCCCC
Q 001989 99 ARRHNSATP-EDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNK-VYKSFIGMGYY 176 (985)
Q Consensus 99 ~~~~~~~~~-~~~~~ml~~~g~~~~~~l~~~~ip~~~~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~-~~~~~lG~g~y 176 (985)
...++|.+= +.-+++++ +.++++++.++ ..+|| .+++++.++.+.++++...+. .|.++.+.|.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~------~~~lp--~~g~~~~~i~~~~~~~~~~~~~~yld~aa~~~~ 92 (456)
T 2z67_A 26 IEGLIPKNMEKRGELVLN-----EYLKEIEDVFN------HRKIP--ENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGER 92 (456)
T ss_dssp CCSSSCHHHHHHHHHHHH-----HHTHHHHHHHH------HCSCC--SSCCCHHHHHHHHHHHHTTBGGGCTTCEECSSC
T ss_pred hhccCcHHHHHHHHHHHH-----HHHHHHHHhhc------cCCCC--CCCCCHHHHHHHHHHHHhccccccccccccccc
Confidence 456776552 33334433 44555554211 13566 478999999999988876654 47777788877
Q ss_pred CCCCcHHHHHHHHh--------CCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchH-HHHHHHHHH
Q 001989 177 NTHVPPVILRNIME--------NPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGT-AAAEAMAMC 247 (985)
Q Consensus 177 ~~~~p~~v~~~i~~--------~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~t-a~~ea~~~a 247 (985)
+..+-..+...... ..+|++ +.| ....+.+..+...++++++|+++|++.. +.+++|+| .+..+++++
T Consensus 93 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~la~~~g~~~~-~~~t~g~te~a~~~al~~ 169 (456)
T 2z67_A 93 EARTYSKIHEELSSGFCHGIGRSGNLVD-PQP-KASGASIMYALTNKILESFFKQLGLNVH-AIATPISTGMSISLCLSA 169 (456)
T ss_dssp CCCCSCHHHHHHTTTCTTCBSBTTBTTS-CCT-TBHHHHHHHHHHHHHHHHHHHHTTCCCE-EEEESSCHHHHHHHHHHH
T ss_pred cccccccccCccccccCCCccHHHHHHh-hCc-ccccCcHHHHHHHHHHHHHHHHcCCCCC-EEEeCcHHHHHHHHHHHH
Confidence 65433332211100 011111 122 1133445778888999999999999876 88899999 444434444
Q ss_pred hhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-----------hhhhc-c-C----CCEeEEEEEcC-CCC
Q 001989 248 NNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-----------KDIDY-K-S----GDVCGVLVQYP-GTE 309 (985)
Q Consensus 248 ~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-----------~~l~~-l-~----~~t~~V~v~~p-n~~ 309 (985)
.+... ++++||+++.+|+++...++. .|++++.++. ++|++ + + +++.+|++++| |.+
T Consensus 170 ~~~~~-~~~~vi~~~~~h~s~~~~~~~----~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~t 244 (456)
T 2z67_A 170 ARKKY-GSNVVIYPYASHKSPIKAVSF----VGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPP 244 (456)
T ss_dssp HHHHH-CCCEEEEECCCCHHHHHHHHH----TTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTT
T ss_pred HHHhc-CCCEEEEECCCcHHHHHHHHH----cCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCC
Confidence 32111 567899999999998887653 5888776643 45655 6 4 47788888988 679
Q ss_pred eeeccHHHHHHHHHhCCcEEEEEe-cC-ccccCCC-CCCcc--cceEEEecC-ccccccCCCCCCcEEEEEEc-hhhHhc
Q 001989 310 GEVLDYGDFIKNAHANGVKVVMAT-DL-LALTILK-PPGEL--GADIVVGSA-QRFGVPMGYGGPHAAFLATS-QEYKRM 382 (985)
Q Consensus 310 G~v~di~~I~~~a~~~galliV~a-~~-~~lg~l~-~~~~~--GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~-~~~~~~ 382 (985)
|.+.|+++|+++||++|++++||. .. .+.|... ....+ ++|++++++ |++++| .++|+++++ +++++.
T Consensus 245 G~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s~hK~~~~p-----~g~G~l~~~~~~~~~~ 319 (456)
T 2z67_A 245 RNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTP-----IGGGLVYSTDAEFIKE 319 (456)
T ss_dssp BCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCC-----SSCEEEEESCHHHHHH
T ss_pred CCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEEEcCCCCcCCC-----CCeEEEEEcCHHHHhh
Confidence 999999999999999999999962 11 2222211 11123 899999999 655444 457899995 667665
Q ss_pred CCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHh
Q 001989 383 MPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLK 462 (985)
Q Consensus 383 lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~ 462 (985)
+.+...|+ + + + ....+..+++ ..++.+|++++.++..+++++++++|+
T Consensus 320 l~~~~~g~----------------------~-----~-~--~~~~~~~aal--~~l~~~~~~~~~~~~~~~~~~l~~~L~ 367 (456)
T 2z67_A 320 ISLSYPGR----------------------A-----S-A--TPVVNTLVSL--LSMGSKNYLELVKNQKNSKKLLDELLN 367 (456)
T ss_dssp HHTTSCSC----------------------B-----C-S--HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCCCC----------------------C-----C-C--CHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53222220 0 0 0 1122333333 566788999999999999999999999
Q ss_pred cC----CCeEEcCCCCcceEEEec--CC-HHHHHHHHHHcCce-eeee--------------cCCeEEEEeccCCCHHHH
Q 001989 463 KL----GTVEVQGLPFFDTVKVKC--AD-AHAIASAAYKIEMN-LRVV--------------DSNTVTASFDETTTLEDV 520 (985)
Q Consensus 463 ~~----g~~~~~~~~~~~~~~~~~--~~-~~~v~~~L~~~GI~-~~~~--------------~~~~lris~t~~~t~edI 520 (985)
++ | +.++.+. +.+.|.. ++ ..++.++|.++||. ++.. ..+.+|+|++.++|++||
T Consensus 368 ~~~~~~g-~~v~~~~--~~v~~~~~~~~~~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~s~~~~~t~eei 444 (456)
T 2z67_A 368 DLSKKTG-GKFLDVE--SPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDI 444 (456)
T ss_dssp HHHHHSS-CCBCCCC--CSSEEEEECSSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHH
T ss_pred hcccccC-CEecCCC--CeEEEEEecccHHHHHHHHHHHcCCCcceEEeecCccccccccccCcchhhhhhhcCCCHHHH
Confidence 88 6 7666433 4444444 55 58899999999862 2221 247899999999999999
Q ss_pred HHHHHHHhC
Q 001989 521 DKLFIVFAG 529 (985)
Q Consensus 521 d~li~aL~~ 529 (985)
|+++++|++
T Consensus 445 d~~l~~L~~ 453 (456)
T 2z67_A 445 VNSVSKLEK 453 (456)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999999975
No 40
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.89 E-value=3.7e-21 Score=229.30 Aligned_cols=360 Identities=13% Similarity=0.098 Sum_probs=246.7
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCc-c--ceecCCCCCCCC-CcHHHHHHHHhCCccccccCCChhhHhhhHH
Q 001989 135 RIDSMKFSKFDEGLTESQMIEHMQKLASMNKV-Y--KSFIGMGYYNTH-VPPVILRNIMENPAWYTQYTPYQAEIAQGRL 210 (985)
Q Consensus 135 ~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~-~--~~~lG~g~y~~~-~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l 210 (985)
......+| ..++++.+++++++++...+.. + ..|.|..+.... +++.+.+. +. .+...+++++..+++..
T Consensus 65 ~~~~~~lp--~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~p~~~ 138 (514)
T 3mad_A 65 FPSHARLP--RAGLPRAEILAEIAAMGAAESPAWRDGYASGAVYHGDEHHIAFLNEV-YA---LQSQSNPLHPDLWPSTA 138 (514)
T ss_dssp SCCCSSCC--SSCCCHHHHHHHHHHHHHHHHHHHHTTCBSSSCSCCCHHHHHHHHHH-HH---HHTTCCTTCTTTCHHHH
T ss_pred cCccCCCC--CCCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCCCCHHHHHHHH-HH---HHhhcCCcccccChHHH
Confidence 33345677 6789999999999998755432 2 234554443221 23334322 22 12334566666677888
Q ss_pred HHHHHHHHHHHHhcCCCC--cce--eeccchHHHHHHHHHHhhhhc-----CCCCEEEEcCCCChhHHHHHHHhhcCCCe
Q 001989 211 ESLLNFQTMIADLTGLPM--SNA--SLLDEGTAAAEAMAMCNNIQK-----GKKKTFIIASNCHPQTIDICITRADGFDI 281 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~--~~~--sl~~~~ta~~ea~~~a~~~~~-----~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi 281 (985)
+...++++++++++|++. .++ .+++|+|.+++.++.+.+... .++|+|+++...|+++...++. .|+
T Consensus 139 ~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~~----~G~ 214 (514)
T 3mad_A 139 KFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQY----FGI 214 (514)
T ss_dssp HHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHHH----HTC
T ss_pred HHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHHH----cCC
Confidence 888899999999999984 455 899999988888776543210 0238999999999999888764 377
Q ss_pred EEEEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCcc---------ccC--
Q 001989 282 KVVVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLA---------LTI-- 340 (985)
Q Consensus 282 ~v~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~---------lg~-- 340 (985)
+++.++. ++|++ +++++++|++++| |.+|.+.|+++|+++|+++|++++||. .++ .|.
T Consensus 215 ~v~~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDe-a~~~~~~~~~~~~g~~~ 293 (514)
T 3mad_A 215 KLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDA-CLGGFILPWAERLGYPV 293 (514)
T ss_dssp EEEEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEEC-TTTTTTHHHHHHTTCCC
T ss_pred eeEEeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEec-ccccccchhHHhcCCCC
Confidence 8888764 45666 8889999999998 569999999999999999999999953 222 111
Q ss_pred -CCCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCC
Q 001989 341 -LKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATS 418 (985)
Q Consensus 341 -l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~ats 418 (985)
.......|+|++++++ |++ +||+++|+++++++........... +..+.. .... ...++.
T Consensus 294 ~~~~~~~~g~d~~~~s~~K~l-----~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~--------~~~gs~ 355 (514)
T 3mad_A 294 PPFDFRLEGVTSVSADTHKYG-----YGAKGTSVILYRRPDLLHYQYFIAA---DWPGGL--YFSP--------TFAGSR 355 (514)
T ss_dssp CCCSTTSTTCCEEEECTTTTT-----CCCSSCEEEEESSHHHHTTTCEEES---SCTTCS--EEES--------SSCSSC
T ss_pred CcccccCCCCcEEEECchhcc-----CCCCCeEEEEEeCHHHhcccccccc---ccCCCc--ccCC--------ccCCCC
Confidence 1123567999999998 554 3455688999988766554322110 100110 0000 011222
Q ss_pred CccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC--HHHHHHHHHHcC
Q 001989 419 NICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKIE 496 (985)
Q Consensus 419 ni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--~~~v~~~L~~~G 496 (985)
+. ....++.++ +..++.+|++++.++..++++++++.|+++.+++++..+. ..+.+..++ ..++.++|.++|
T Consensus 356 ~~---~~~~a~~aa--l~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~G 429 (514)
T 3mad_A 356 PG---ALSATAWAA--MLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPL-WVIAVASDELNIYQVMEEMAGRG 429 (514)
T ss_dssp CH---HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCS-SEEEEECSSSCHHHHHHHHHTTT
T ss_pred ch---HHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCe-EEEEEeCCCCCHHHHHHHHHhcC
Confidence 22 122233333 3667888999999999999999999999984488875442 245555544 889999999999
Q ss_pred ceeeee-cCCeEEEEeccC-CCHHHHHHHHHHHhC
Q 001989 497 MNLRVV-DSNTVTASFDET-TTLEDVDKLFIVFAG 529 (985)
Q Consensus 497 I~~~~~-~~~~lris~t~~-~t~edId~li~aL~~ 529 (985)
|.+... .++.+|++++.. ++++|||+++++|++
T Consensus 430 i~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~ 464 (514)
T 3mad_A 430 WRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQD 464 (514)
T ss_dssp CBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHH
T ss_pred CEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 988544 367899999955 466999999999974
No 41
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.89 E-value=1.6e-21 Score=225.03 Aligned_cols=319 Identities=13% Similarity=0.106 Sum_probs=213.7
Q ss_pred HHHHHHHHHHHHHHhCC-Ccc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCccc----HHHHHHCCcEE
Q 001989 631 QEMFNNLGEWLCTITGF-DSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN----PATAAMCGMKI 704 (985)
Q Consensus 631 ~~~~~e~~~~la~l~G~-~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~----~~~a~~~G~~v 704 (985)
.+...++++.+++++|. +.. .++.++|++|+..++.+++... ..++++|+++...|... ...++..|+++
T Consensus 71 ~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~----~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~ 146 (420)
T 1t3i_A 71 TDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNN----LKAGDEIITTVMEHHSNLVPWQMVAAKTGAVL 146 (420)
T ss_dssp HHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHH----CCTTCEEEEETTCCGGGTHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhcc----cCCCCEEEECcchhHHHHHHHHHHHHhcCcEE
Confidence 35567899999999998 443 3556777887766666553110 13678999988877763 34456789999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g 783 (985)
+.+|+++++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+++|+++|+|++|..+...+ ....++
T Consensus 147 ~~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~~~~~~-~~~~~~ 221 (420)
T 1t3i_A 147 KFVQLDEQESFDLEHFKTLLS---EKTKLVTVVHISNTLGCVN-PAEEIAQLAHQAGAKVLVDACQSAPHYPL-DVQLID 221 (420)
T ss_dssp EEECBCTTSSBCHHHHHHHCC---TTEEEEEEESBCTTTCBBC-CHHHHHHHHHHTTCEEEEECTTTTTTSCC-CHHHHT
T ss_pred EEeccCCCCCcCHHHHHHhhC---CCceEEEEeCCcccccCcC-CHHHHHHHHHHcCCEEEEEhhhccCCccC-chhhcC
Confidence 999998888999999999997 78999999998 4699998 89999999999999999999986432211 223467
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCC-C-----CCCCC-CCCCCCCCCCcchhhhHHHHHH
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTG-G-----IPAPE-KSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~-~-----~~~~~-~~~~~~~i~s~~~g~~~~~~~a 856 (985)
.|++++|+||.+ |++|+|++++++++.+.+.....++.. + ...+. ..... ..+++.. ..+++.
T Consensus 222 ~di~~~s~sK~~------~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~a~ 291 (420)
T 1t3i_A 222 CDWLVASGHKMC------APTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKF-EAGTPAI---AEAIAL 291 (420)
T ss_dssp CSEEEEEGGGTT------SCTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGG-CCSSCCH---HHHHHH
T ss_pred CCEEEEehhhhc------CCCceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhc-cCCCccH---HHHHHH
Confidence 999999999965 345689999998765544322111100 0 00000 00000 0111111 111111
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCC---ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCc
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNG---TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 933 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~---~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~ 933 (985)
.+.+..+...++.++.++..++++++.+.|++..++....+.. .....+.+.++ +.+..++.+.|.++||.
T Consensus 292 ~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~ 365 (420)
T 1t3i_A 292 GAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVA------GLHASDVATMVDQDGIA 365 (420)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEET------TBCHHHHHHHHHTTTEE
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEEC------CCCHHHHHHHHHHCCeE
Confidence 2245555555677777888899999999998732332222210 01122344554 34678899999999998
Q ss_pred cCCCC---------CCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 934 GPTMS---------WPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 934 ~~~~~---------~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+.... +...+.+||+++..++++|+++ +++.|+++++.++.
T Consensus 366 v~~~~~~~~~~~~~~g~~~~iRis~~~~~~~~~i~~--~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 366 IRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDL--FLQSLQATIRFFSD 415 (420)
T ss_dssp CBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHH--HHHHHHHHHHHTC-
T ss_pred EeeccccchHHHHhcCCCCeEEEecCCCCCHHHHHH--HHHHHHHHHHHhcC
Confidence 75431 1125789999999999999999 88999999887754
No 42
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.89 E-value=1.1e-21 Score=225.12 Aligned_cols=315 Identities=16% Similarity=0.131 Sum_probs=212.0
Q ss_pred HHHHHHHHHHHHHHHhCC-Ccc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH-H---HHHHCCcE
Q 001989 630 YQEMFNNLGEWLCTITGF-DSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP-A---TAAMCGMK 703 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~-~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~-~---~a~~~G~~ 703 (985)
..+...++++++++++|. +.. .++.++|++|+..++.+++.+. ..++++|++++..|.+.. . .++..|++
T Consensus 65 ~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~----~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~ 140 (406)
T 1kmj_A 65 ATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSN----VRAGDNIIISQMEHHANIVPWQMLCARVGAE 140 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHH----CCTTCEEEEETTCCGGGTHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhc----CCCCCEEEEecccchHHHHHHHHHHHhCCCE
Confidence 345677899999999998 443 3556777777766666553210 136789999887766542 2 25667999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
++.+|.++++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+++|+++++|++|..+...+ ....+
T Consensus 141 ~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~~~~~g~~~~-~~~~~ 215 (406)
T 1kmj_A 141 LRVIPLNPDGTLQLETLPTLFD---EKTRLLAITHVSNVLGTEN-PLAEMITLAHQHGAKVLVDGAQAVMHHPV-DVQAL 215 (406)
T ss_dssp EEEECBCTTSCBCGGGHHHHCC---TTEEEEEEESBCTTTCCBC-CHHHHHHHHHHTTCEEEEECTTTTTTSCC-CHHHH
T ss_pred EEEEecCCCCCcCHHHHHHHhc---cCCeEEEEeCCCccccCcC-CHHHHHHHHHHcCCEEEEEchhhcCCCCC-ccccc
Confidence 9999998888999999999997 78999999998 5799998 89999999999999999999986432211 12345
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCC-CC--CC----CC-CCCCCCCCCCcchhhhHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTG-GI--PA----PE-KSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~-~~--~~----~~-~~~~~~~i~s~~~g~~~~~~ 854 (985)
++|+++.|+||+| |++|+|++++++++.+.+.....+++. +. .. +. ..... ...++ ....++
T Consensus 216 ~~d~~~~s~~K~~------g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~ 285 (406)
T 1kmj_A 216 DCDFYVFSGHKLY------GPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRF-EAGTP---NTGGII 285 (406)
T ss_dssp TCSEEEEEGGGTT------SCTTCEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGG-CCSSC---CHHHHH
T ss_pred CCCEEEEEchhcc------CCCCcEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhc-cCCCC---CHHHHH
Confidence 7999999999987 345689999998766555332222110 00 00 00 00000 00111 111111
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCC--CCceeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGV--NGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 855 ~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~--~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
+..+.+..+..+++.+..++..++++++.+.|++..++.+..+ .+. .+.+.++ +.+..++.+.|.++||
T Consensus 286 a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~---~~~~~~~------~~~~~~~~~~l~~~gi 356 (406)
T 1kmj_A 286 GLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLG---VIAFNLG------KHHAYDVGSFLDNYGI 356 (406)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCS---EEEEEET------TCCHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCC---EEEEEEC------CCCHHHHHHHHhhCCc
Confidence 1123455555556777777888899999999987323322222 222 2344443 4567889999999999
Q ss_pred ccCCCC---------CCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 933 HGPTMS---------WPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 933 ~~~~~~---------~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.+.... +..++.+||+++..+|++|+++ +++.|+++++.+
T Consensus 357 ~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~--~~~~l~~~~~~l 405 (406)
T 1kmj_A 357 AVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDR--LVTGLQRIHRLL 405 (406)
T ss_dssp ECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHH--HHHHHHHHHHHH
T ss_pred EEEeccccchHHHHhcCCCCeEEEEeecCCCHHHHHH--HHHHHHHHHHhh
Confidence 874311 1124899999999999999999 888898888765
No 43
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.89 E-value=1.4e-21 Score=223.93 Aligned_cols=316 Identities=15% Similarity=0.123 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHHHHhCCCcc--ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH--HHHHCCcEEEE
Q 001989 631 QEMFNNLGEWLCTITGFDSF--SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA--TAAMCGMKIVS 706 (985)
Q Consensus 631 ~~~~~e~~~~la~l~G~~~~--~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~--~a~~~G~~vv~ 706 (985)
.+...++++++++++|.+.. .++.++|++|+..++.++. .++++|++++..|..+.. .++..|++++.
T Consensus 51 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~ 122 (393)
T 2huf_A 51 LKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLL--------EDGDVILIGHTGHWGDRSADMATRYGADVRV 122 (393)
T ss_dssp HHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC--------CTTCEEEEEESSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHh--------CCCCEEEEECCCcchHHHHHHHHHcCCeeEE
Confidence 35567899999999998763 3566778877765554431 367899998876654321 24568999999
Q ss_pred EcCCCCCCCCHHHHHHHHHhcCC-CEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCC
Q 001989 707 VGTDAKGNINIEELRKAAEANRD-NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGA 784 (985)
Q Consensus 707 v~~d~~g~iD~e~L~~~i~~~~~-~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~ 784 (985)
+|+++++.+|+++|+++++ + ++++|++++| |++|.+. |+++|.++|+++|+++|+|++|..+...+ ....+++
T Consensus 123 v~~~~~~~~d~~~l~~~i~---~~~~~~v~~~~~~nptG~~~-~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~ 197 (393)
T 2huf_A 123 VKSKVGQSLSLDEIRDALL---IHKPSVLFLTQGDSSTGVLQ-GLEGVGALCHQHNCLLIVDTVASLGGAPM-FMDRWEI 197 (393)
T ss_dssp EECCTTCCCCHHHHHHHHH---HHCCSEEEEESEETTTTEEC-CCTTHHHHHHHTTCEEEEECTTTBTTBCC-CTTTTTC
T ss_pred EeCCCCCCCCHHHHHHHHh---ccCCcEEEEEccCCCccccC-CHHHHHHHHHHcCCEEEEEcccccCCCCc-chhhcCc
Confidence 9998888999999999998 5 7889999998 5799998 89999999999999999999986433222 2345679
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCC-------CCcccc------CCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP-------SHPVVS------TGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp-------~~~~g~------~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
|++++|+||+|+ |++|.|++++++++.+.+. +..++. ....... + ...... +..
T Consensus 198 d~~~~s~sK~l~-----g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~-----~~~ 264 (393)
T 2huf_A 198 DAMYTGSQKVLG-----APPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRP-R--IYHHTI-----SST 264 (393)
T ss_dssp SEEECCSSSTTC-----CCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSC-C--CCSCCC-----CHH
T ss_pred cEEEECCCcccc-----cCCCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhcccccc-C--CCCCCC-----CHH
Confidence 999999999974 3457799999876544321 111110 0000000 0 000111 111
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCC-ceeeEEEEEecCccccCCCCHHHHHHHHHH
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~-~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
...++.+.+..+..+++.+..++..++++++.+.|++ ++.+. .+.+ .....+.+.++ .+.+..++.++|.+
T Consensus 265 ~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~L~~ 337 (393)
T 2huf_A 265 LLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFELY--ADPKDRLSTVTTIKVP-----QGVDWLKAAQYAMK 337 (393)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBS--SCGGGBCTTEEEEECC-----TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCeec--cCccccCCcEEEEEcC-----CCCCHHHHHHHHHH
Confidence 2222233455554556777778888999999999987 44442 2111 01112345543 24578899999987
Q ss_pred C-CCccCCCCCC-CCCEEEEeccC-CCCHHHHHHHHccCChhHHHHhhccCCccc
Q 001989 930 Y-GFHGPTMSWP-VPGTLMIEPTE-SESKSWTGIVMLSSPSEKKLHRLKMGRQIS 981 (985)
Q Consensus 930 ~-Gi~~~~~~~p-~~~~lris~t~-~~t~eeId~~~~~~~l~~~~~~~~~~~~~~ 981 (985)
+ ||.+.....+ ..+.+||+++. .++++|+++ +++.|++++++++..-++.
T Consensus 338 ~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~--~~~~l~~~~~~~~~~~~~~ 390 (393)
T 2huf_A 338 TYLVEISGGLGPTAGQVFRIGLMGQNATTERVDR--VLQVFQEAVAAVKPDVQVK 390 (393)
T ss_dssp HHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHH--HHHHHHHHHHHHCC-----
T ss_pred hCCEEEecCcccccCCEEEEEcccCcCCHHHHHH--HHHHHHHHHHHcCCCcccc
Confidence 5 9987643221 35799999944 568999999 8899999999887754443
No 44
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.89 E-value=3.6e-21 Score=221.51 Aligned_cols=296 Identities=17% Similarity=0.149 Sum_probs=215.1
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 207 QGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
++..+.+.++++.+|+++|.++.++.+++|+|++++.++.++....++||+|+++...|+++...+..+++..|++++.+
T Consensus 65 ~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v 144 (406)
T 3cai_A 65 RRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWA 144 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEE
Confidence 34456788899999999999888899999999888877665520113789999999999999888876554458888887
Q ss_pred Cc---------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEe
Q 001989 287 DL---------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVG 354 (985)
Q Consensus 287 ~~---------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~ 354 (985)
+. ++|++ +++++++|++.+| |.+|.+.|+++|.++|+++|+++++| ...+.|... +..++|+|++++
T Consensus 145 ~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-~a~~~g~~~~~~~~~~~d~~~~ 223 (406)
T 3cai_A 145 EVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVD-HSAAAPYRLLDIRETDADVVTV 223 (406)
T ss_dssp CCCTTTCCCCGGGHHHHCCTTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEE-CTTTTTTCCCCHHHHCCSEEEE
T ss_pred ecCcccCCcCHHHHHHHhCCCceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEE-cccccCCCCCCchhcCCCEEEe
Confidence 64 34555 7889999999987 78999999999999999999999995 344555432 224578999999
Q ss_pred cCccccccCCCCCCcEE-EEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH
Q 001989 355 SAQRFGVPMGYGGPHAA-FLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 355 s~k~lg~P~~~GGP~~G-~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~ 433 (985)
|.+|+.+ |++| ++++++++.+++......+ |. .+..+.+.+|.|+ ....++.+++
T Consensus 224 s~~K~~g------~~~G~~~~~~~~~~~~l~~~~~~~-----~~----------~~~~~~~~~t~~~---~~~~a~~~al 279 (406)
T 3cai_A 224 NAHAWGG------PPIGAMVFRDPSVMNSFGSVSTNP-----YA----------TGPARLEIGVHQF---GLLAGVVASI 279 (406)
T ss_dssp EGGGGTS------CSCEEEEESCHHHHHTSCCCCSCT-----TC----------CGGGGGCCSCCCH---HHHHHHHHHH
T ss_pred ehhhhcC------CCcCeEEEEehHHHhhcCCcccCC-----CC----------CccccccCCCccH---HHHHHHHHHH
Confidence 9833422 3367 9999998887764321000 00 0112234566665 3333444444
Q ss_pred HHHHhCcc--------------hHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC--CcceEEEecCC--HHHHHHHHHHc
Q 001989 434 YAVYHGPE--------------GLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP--FFDTVKVKCAD--AHAIASAAYKI 495 (985)
Q Consensus 434 ~l~~~g~~--------------Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~--~~~~~~~~~~~--~~~v~~~L~~~ 495 (985)
.++... +++++.++..++++++.+.|+++.++++..+. ....+.+..++ ..++.+.|.++
T Consensus 280 --~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 357 (406)
T 3cai_A 280 --EYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHKVPADRVVQRLADN 357 (406)
T ss_dssp --HHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEETTBCHHHHHHHHHHT
T ss_pred --HHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEECCcCHHHHHHHHHHC
Confidence 232222 47889999999999999999998448887432 23345666654 88899999999
Q ss_pred Cceeeeec-------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 496 EMNLRVVD-------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 496 GI~~~~~~-------------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
||.++... .+.+|++++.++|++|+++++++|+.
T Consensus 358 gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 358 GILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp TEECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred CcEEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 99876421 36899999999999999999999974
No 45
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.89 E-value=1.1e-21 Score=224.62 Aligned_cols=317 Identities=11% Similarity=0.048 Sum_probs=211.2
Q ss_pred HHHHHHHHHHHHHHHhCCCcc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH--HHHHHCCcEEEE
Q 001989 630 YQEMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP--ATAAMCGMKIVS 706 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~--~~a~~~G~~vv~ 706 (985)
..+...++++++++++|.+.. .++.++|++|+..++.++. .++++|++++..|..+. ..++..|++++.
T Consensus 40 ~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~ 111 (392)
T 2z9v_A 40 FQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLI--------SPDDVVLNLASGVYGKGFGYWAKRYSPHLLE 111 (392)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHC--------CTTCCEEEEESSHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhc--------CCCCEEEEecCCcccHHHHHHHHHcCCceEE
Confidence 345677899999999998753 3555777777755544331 36788999887665443 223457999999
Q ss_pred EcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCc
Q 001989 707 VGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGAD 785 (985)
Q Consensus 707 v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~D 785 (985)
+|+++++.+|+++|++++++. +++++|++++| |++|.+. |+++|.++|+++|+++++|++|..+...+ ....+++|
T Consensus 112 v~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~g~~~~-~~~~~~~d 188 (392)
T 2z9v_A 112 IEVPYNEAIDPQAVADMLKAH-PEITVVSVCHHDTPSGTIN-PIDAIGALVSAHGAYLIVDAVSSFGGMKT-HPEDCKAD 188 (392)
T ss_dssp EECCTTSCCCHHHHHHHHHHC-TTCCEEEEESEEGGGTEEC-CHHHHHHHHHHTTCEEEEECTTTBTTBSC-CGGGGTCS
T ss_pred eeCCCCCCCCHHHHHHHHhcC-CCCcEEEEeccCCCCceec-cHHHHHHHHHHcCCeEEEEcccccCCccc-ccccccce
Confidence 999888899999999999632 57889999998 4699998 89999999999999999999986432221 23346799
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcC------CC-CccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFL------PS-HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~l------p~-~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
++++|+||+++ |++|+|++++++++.+.+ ++ ...+.......+ ..... ...+. +...+.++.+
T Consensus 189 ~~~~s~sK~~~-----~~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~-~~~~~-~~~~~---~~~~~~a~~~ 258 (392)
T 2z9v_A 189 IYVTGPNKCLG-----APPGLTMMGVSERAWAKMKANPLAPRASMLSIVDWENAW-SRDKP-FPFTP---SVSEINGLDV 258 (392)
T ss_dssp EEEECSSSTTC-----CCSCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTT-STTSC-CSSCC---CHHHHHHHHH
T ss_pred EEEecCccccc-----CCCceeEEEECHHHHHHhhhccCCCCceeccHHHHHhhh-cccCC-CCCCC---CHHHHHHHHH
Confidence 99999999874 446789999997764433 11 111100000000 00000 00110 1122222334
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCC-CceeeEEEEEecCccccCCCCHHHHHHHHHHC-CCccC
Q 001989 859 YIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVN-GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY-GFHGP 935 (985)
Q Consensus 859 ~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~-~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~-Gi~~~ 935 (985)
.+..+...|+.+..++..++++++.+.|++ ++.+..+ +. ....+.+.+.++ .+.+..++.++|.++ ||.+.
T Consensus 259 al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~l~~~L~~~~gi~v~ 332 (392)
T 2z9v_A 259 ALDLYLNEGPEAVWARHALTAKAMRAGVTAMGLSVWAA-SDSIASPTTTAVRTP-----DGVDEKALRQAARARYGVVFS 332 (392)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSS-SGGGBCTTEEEEECC-----TTCCHHHHHHHHHHHHCEECE
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCeeccC-CccccCCceEEEECC-----CCCCHHHHHHHHHhcCCEEEe
Confidence 555555556777788888999999999987 4443220 11 001222345553 245788999999997 99875
Q ss_pred CCC-CCCCCEEEEeccC-CCCHHHHHHHHccCChhHHHHhhc
Q 001989 936 TMS-WPVPGTLMIEPTE-SESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 936 ~~~-~p~~~~lris~t~-~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
... +...+.+||++.. .+|++|+++ +++.|++++++++
T Consensus 333 ~g~~~~~~~~lRi~~~~~~~~~~~i~~--~~~~l~~~~~~~~ 372 (392)
T 2z9v_A 333 SGRGETLGKLTRIGHMGPTAQPIYAIA--ALTALGGAMNAAG 372 (392)
T ss_dssp ECCGGGTTTEEEEECCGGGCSHHHHHH--HHHHHHHHHHHTT
T ss_pred cCCCCCCCCeEEEeCcccccCHHHHHH--HHHHHHHHHHHcC
Confidence 432 1235899999654 899999999 8899999887764
No 46
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.89 E-value=5.2e-21 Score=220.81 Aligned_cols=305 Identities=17% Similarity=0.110 Sum_probs=216.4
Q ss_pred HHHHHHHHHHHHHhcCC-CCcceeeccchHHHHHHHHHHhhhh-cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC
Q 001989 210 LESLLNFQTMIADLTGL-PMSNASLLDEGTAAAEAMAMCNNIQ-KGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD 287 (985)
Q Consensus 210 l~~i~e~q~~ia~L~g~-~~~~~sl~~~~ta~~ea~~~a~~~~-~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~ 287 (985)
.+.+.++++.+|+++|. ++.++.+++|+|.+++.++.+++.. .++||+|+++...|++...++...++..|++++.++
T Consensus 71 ~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 150 (420)
T 1t3i_A 71 TDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQ 150 (420)
T ss_dssp HHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEec
Confidence 35667889999999999 6778999999999888887765200 137899999999999976655544445688888876
Q ss_pred c--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecC
Q 001989 288 L--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA 356 (985)
Q Consensus 288 ~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~ 356 (985)
. ++|++ +++++++|++++| |.+|.+.|+++|.++||++|+++++| +.++.|... ...++|+|++++|.
T Consensus 151 ~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-~a~~~~~~~~~~~~~~~di~~~s~ 229 (420)
T 1t3i_A 151 LDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVD-ACQSAPHYPLDVQLIDCDWLVASG 229 (420)
T ss_dssp BCTTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEE-CTTTTTTSCCCHHHHTCSEEEEEG
T ss_pred cCCCCCcCHHHHHHhhCCCceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEE-hhhccCCccCchhhcCCCEEEEeh
Confidence 4 45666 7889999999988 78999999999999999999999995 345555442 33467899999998
Q ss_pred ccccccCCCCCCcEEEEEEchhhHhcCCCceeeee-ecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHH
Q 001989 357 QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVS-IDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYA 435 (985)
Q Consensus 357 k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t-~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l 435 (985)
+|+. |++|+|++++++++.+.+.....++. .+..... ...+ .....+.+.+|+++ ....++.+++
T Consensus 230 sK~~-----~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~---~~~~a~~~al-- 295 (420)
T 1t3i_A 230 HKMC-----APTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFD--HFTT--GELPHKFEAGTPAI---AEAIALGAAV-- 295 (420)
T ss_dssp GGTT-----SCTTCEEEEECHHHHHHSCCCSCSTTSEEEECSS--CEEE--CCTTGGGCCSSCCH---HHHHHHHHHH--
T ss_pred hhhc-----CCCceEEEEEchHHHhhcCceecCCCcccccccc--ccCC--CCchhhccCCCccH---HHHHHHHHHH--
Confidence 4353 33458999999998887754433321 0000000 0001 11122233455554 2233333333
Q ss_pred HHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC-----CcceEEEecCC--HHHHHHHHHHcCceeeee------
Q 001989 436 VYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-----FFDTVKVKCAD--AHAIASAAYKIEMNLRVV------ 502 (985)
Q Consensus 436 ~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-----~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~------ 502 (985)
.++...|++++.++..++++++.+.|+++.++++..+. ...-+.+.+++ ..++.+.|.++||.+...
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~ 375 (420)
T 1t3i_A 296 DYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQP 375 (420)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEECCCCHHHHHHHHHHCCeEEeeccccchH
Confidence 44444578899999999999999999998338887432 23345555554 788999999999987543
Q ss_pred -----c-CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 -----D-SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -----~-~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. ++.+|++++.++|++|+++++++|..
T Consensus 376 ~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~ 408 (420)
T 1t3i_A 376 LHRLFDASGSARASLYFYNTKEEIDLFLQSLQA 408 (420)
T ss_dssp HHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 1 57899999999999999999999974
No 47
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.89 E-value=6.6e-22 Score=222.40 Aligned_cols=308 Identities=12% Similarity=0.143 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHHHHHhCCC--cc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCccc--HHHHHHCCcEE
Q 001989 630 YQEMFNNLGEWLCTITGFD--SF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN--PATAAMCGMKI 704 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~--~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~--~~~a~~~G~~v 704 (985)
..+...++++++++++|.+ .. .++.++|++|+..++ +.+ .+ ++|++++..|..+ ...++..|+++
T Consensus 31 ~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~---~~~------~~-d~vl~~~~~~~~~~~~~~~~~~g~~~ 100 (353)
T 2yrr_A 31 VLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGL---ANL------DR-GPVLVLVNGAFSQRVAEMAALHGLDP 100 (353)
T ss_dssp HHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHH---HTC------SC-CCEEEEECSHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHH---HHh------cC-CcEEEEcCCCchHHHHHHHHHcCCce
Confidence 3456778999999999985 33 355566777664333 321 12 6788877655543 23356789999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCC-CEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRD-NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~-~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
+.+|+++++.+|+++|+++++ + ++++|++++| |++|.+. |+++|.++|+++|+++|+|++|..+...+ ....+
T Consensus 101 ~~v~~~~~~~~d~~~l~~~l~---~~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~~li~D~a~~~~~~~~-~~~~~ 175 (353)
T 2yrr_A 101 EVLDFPPGEPVDPEAVARALK---RRRYRMVALVHGETSTGVLN-PAEAIGALAKEAGALFFLDAVTTLGMLPF-SMRAM 175 (353)
T ss_dssp EEEECCTTSCCCHHHHHHHHH---HSCCSEEEEESEETTTTEEC-CHHHHHHHHHHHTCEEEEECTTTTTTSCC-CHHHH
T ss_pred EEEeCCCCCCCCHHHHHHHHH---hCCCCEEEEEccCCCcceec-CHHHHHHHHHHcCCeEEEEcCcccccccc-ccccc
Confidence 999998888999999999998 4 7888999998 5799998 89999999999999999999985322111 22345
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCC---CccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS---HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~---~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~ 859 (985)
++|++++++||+++ |++|+|++++++++.+.+.. ..+...............++. +.....++.+.
T Consensus 176 ~~d~~~~s~~K~~~-----~~~g~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~a~~~a 244 (353)
T 2yrr_A 176 GVDYAFTGSQKCLS-----APPGLAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTT------PVLLHYALLEA 244 (353)
T ss_dssp TCSEEECCTTSTTC-----CCSSCEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCC------CHHHHHHHHHH
T ss_pred CceEEEecCccccc-----CCCceEEEEECHHHHHHhccCCCccccHHHHhhhhhcCCCCCCC------CHHHHHHHHHH
Confidence 78999999999874 34678999999876654431 100000000000000001111 11222233355
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC
Q 001989 860 IAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS 938 (985)
Q Consensus 860 l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~ 938 (985)
+..+..+|+.+..++..++++++.+.|++ ++++. ++.......+.+.++ .+.+..++.++|.++||.+....
T Consensus 245 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~gi~v~~g~ 317 (353)
T 2yrr_A 245 LDLVLEEGVAARERRAREVYAWVLEELKARGFRPY--PKASPLPTVLVVRPP-----EGVDADRLVRALYAEGVAVAGGI 317 (353)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEES--CSSSBCTTEEEEECC-----TTCCHHHHHHHHHHTTEECEECC
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCccc--cCccCCCeEEEEECC-----CCCCHHHHHHHHHHCCEEEeCCc
Confidence 56665666778888889999999999987 44332 221101112335553 24678899999999999875432
Q ss_pred -CCCCCEEEEeccCCCCHHHHH-HHHccCChhHHHH
Q 001989 939 -WPVPGTLMIEPTESESKSWTG-IVMLSSPSEKKLH 972 (985)
Q Consensus 939 -~p~~~~lris~t~~~t~eeId-~~~~~~~l~~~~~ 972 (985)
+..++.+|++++..++++|++ + +++.|++++.
T Consensus 318 ~~~~~~~iRi~~~~~~~~~~~~~~--~~~~l~~~l~ 351 (353)
T 2yrr_A 318 GPTRGQVLRLGLMGEGARREAYQA--FLKALDRALA 351 (353)
T ss_dssp GGGTTTCEEEECSGGGSCHHHHHH--HHHHHHHHHH
T ss_pred cccCCCeEEEecCccCCHHHHHHH--HHHHHHHHHh
Confidence 212478999999889999999 8 7788887764
No 48
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.89 E-value=5.5e-22 Score=225.78 Aligned_cols=310 Identities=10% Similarity=0.028 Sum_probs=206.9
Q ss_pred hHHHHHHHHHHHHHHHhCCCc--cc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCC-CCcccH--HHHHHCCc
Q 001989 629 GYQEMFNNLGEWLCTITGFDS--FS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVS-AHGTNP--ATAAMCGM 702 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~--~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~-~Hg~~~--~~a~~~G~ 702 (985)
+..+..+++++++++++|.+. .. +++++|++|+..++.++. .++++||++.. .|+ +. ..+...|+
T Consensus 49 ~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~--------~~gd~vi~~~~~~~~-~~~~~~~~~~g~ 119 (376)
T 3f0h_A 49 EFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF--------TKKDKVLVIDGGSFG-HRFVQLCEIHEI 119 (376)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC--------CTTCCEEEEESSHHH-HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc--------CCCCeEEEEeCChhh-HHHHHHHHHcCC
Confidence 445677899999999999874 23 446777887755544432 36788888754 333 22 23567899
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCc
Q 001989 703 KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY 781 (985)
Q Consensus 703 ~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~ 781 (985)
+++.++.+.++.+|+++|+++++ +++++|++++| |++|.+. |+++|+++|+++|+++++|+++..+... .....
T Consensus 120 ~~~~v~~~~~~~~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~~~~~~~~~-~~~~~ 194 (376)
T 3f0h_A 120 PYVALKLEHGKKLTKEKLYEYDN---QNFTGLLVNVDETSTAVLY-DTMMIGEFCKKNNMFFVCDCVSAFLADP-FNMNE 194 (376)
T ss_dssp CEEEEECCTTCCCCHHHHHTTTT---SCCCEEEEESEETTTTEEC-CHHHHHHHHHHTTCEEEEECTTTTTTSC-CCHHH
T ss_pred ceEEEeCCCCCCCCHHHHHHhhc---cCceEEEEecccCCcceec-CHHHHHHHHHHcCCEEEEEcCccccCcc-ccccc
Confidence 99999998888999999999876 78999999987 6799998 8999999999999999999988532111 12234
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCC-ccccCCCCC---CCCCCCCCCCCCCcchhhhHHHHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSH-PVVSTGGIP---APEKSQPLGTIAAAPWGSALILPISY 857 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~-~~g~~~~~~---~~~~~~~~~~i~s~~~g~~~~~~~a~ 857 (985)
+++|++++++||+|+ |++|+|++++++++.+.+... ..+...+.. .......+.... ....+.++.
T Consensus 195 ~~~d~~~~s~~K~l~-----~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~a~~ 264 (376)
T 3f0h_A 195 CGADVMITGSQKVLA-----CPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTP-----AVGILLQIN 264 (376)
T ss_dssp HTCSEEEEETTTTTC-----CCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCC-----CHHHHHHHH
T ss_pred cCccEEEecCccccc-----CCCceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCC-----cHHHHHHHH
Confidence 679999999999984 356889999988765433210 000000000 000000111111 111122334
Q ss_pred HHHHHhcHH-HHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC-CCccC
Q 001989 858 TYIAMMGSK-GLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY-GFHGP 935 (985)
Q Consensus 858 a~l~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~-Gi~~~ 935 (985)
+.+..+..+ ++.+..++..++++++.+.|++ .++....+. .....+.+... +.+..++.++|.++ ||.+.
T Consensus 265 ~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~-~~~~~~~~~~~------~~~~~~l~~~l~~~~gi~v~ 336 (376)
T 3f0h_A 265 ERLKEIKKHGGADAEVARIASQAADFRAKIKD-LPFELVSES-PANGVTSVHPT------TANAYDIFLKLKDEYGIWIC 336 (376)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT-SSEEECCSS-BBTTEEEEEES------SSCHHHHHHHHHHHSSEECE
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-cCCccCccc-cCceEEEEeCC------CCCHHHHHHHHHHhCCEEEe
Confidence 455555555 6788888888999999999986 222221211 11112333322 56788999999998 99875
Q ss_pred CCC-CCCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 936 TMS-WPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 936 ~~~-~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
... ....+.+|++++..+|++|+++ +++.|+++++
T Consensus 337 ~g~~~~~~~~lRis~~~~~t~e~i~~--~~~~l~~~l~ 372 (376)
T 3f0h_A 337 PNGGEMKDTIFRVGHIGALTHEDNTT--LVNAFKDLQK 372 (376)
T ss_dssp ECCGGGTTTCEEEECCSSCCHHHHHH--HHHHHHHHHH
T ss_pred cCccccCCCEEEEecCCCCCHHHHHH--HHHHHHHHHH
Confidence 322 1124789999999999999999 7788888775
No 49
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.89 E-value=5.7e-22 Score=233.16 Aligned_cols=311 Identities=14% Similarity=0.089 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHHHhCCCccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEE--
Q 001989 632 EMFNNLGEWLCTITGFDSFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKI-- 704 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~v-- 704 (985)
+..+++++++++++|.+...+ +.+++++++..+ ++.+. ..+ .++++||++...|+++.. .++..|+++
T Consensus 111 ~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~---~~~~~-~~~-~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~ 185 (465)
T 3e9k_A 111 TGDESIVGLMKDIVGANEKEIALMNALTVNLHLL---MLSFF-KPT-PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEE 185 (465)
T ss_dssp GTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHH---HHHHC-CCC-SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHH
T ss_pred HhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHH---HHHhc-ccc-CCCCEEEEcCCcCCchHHHHHHHHHHcCCccee
Confidence 344578899999999987554 445555555333 33321 122 356789999887765433 355678764
Q ss_pred ---EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCC
Q 001989 705 ---VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 780 (985)
Q Consensus 705 ---v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg 780 (985)
..+|.+.++.+|+++|+++|+++.+++++|++++|+ ++|.+. |+++|.++||++|+++++|++|..+...+ ...
T Consensus 186 ~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~-~l~~i~~la~~~g~~vi~D~a~~~g~~~~-~~~ 263 (465)
T 3e9k_A 186 SMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHF-NIPAITKAGQAKGCYVGFDLAHAVGNVEL-YLH 263 (465)
T ss_dssp HEEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBC-CHHHHHHHHHHTTCEEEEECTTTTTTSCC-CHH
T ss_pred eeEEEecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceee-cHHHHHHHHHHcCCEEEEEhhhhcCCcCC-chh
Confidence 445666778999999999997544689999999985 699998 89999999999999999999986443222 223
Q ss_pred ccCCcEEEeCCcccccccCCCCCC-ceEEEEEcccccCcCCCCccccCCCC----------CCC-----CCCCCCCCCCC
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGP-GMGPIGVKKHLAPFLPSHPVVSTGGI----------PAP-----EKSQPLGTIAA 844 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGP-g~G~i~~~~~l~~~lp~~~~g~~~~~----------~~~-----~~~~~~~~i~s 844 (985)
++++|++++++||+|+ ||| |+|++++++++.+.+.....|+.+.. ..+ +.+.++.
T Consensus 264 ~~~~D~~~~s~~K~l~-----~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~---- 334 (465)
T 3e9k_A 264 DWGVDFACWCSYKYLN-----AGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNP---- 334 (465)
T ss_dssp HHTCCEEEECSSSTTC-----CCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCC----
T ss_pred hcCCCEEEECcccccc-----cCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCc----
Confidence 6789999999999984 456 47999999887665544333321110 000 0011111
Q ss_pred cchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc----------CCeeecCCCCc--eeeEEEEEecCc
Q 001989 845 APWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH----------YPILFRGVNGT--VAHEFIVDLRGL 912 (985)
Q Consensus 845 ~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g----------~~l~~~~~~~~--~~~~~iv~~~~~ 912 (985)
+...+.+..+.+..+...|+.++.++..++++++.+.|++. .++....+..+ ....+.+.++
T Consensus 335 ----~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~-- 408 (465)
T 3e9k_A 335 ----PILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFS-- 408 (465)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEEC--
T ss_pred ----cHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEec--
Confidence 11223334455666666677888888899999999999763 23322222110 1112344443
Q ss_pred cccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEec-cCCCCHHHHHHHHccCChhHHHHhh
Q 001989 913 KNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP-TESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 913 ~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~-t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.+..++.++|.++||.+.. ..++++|+++ +.++|++||++ +++.|++++++.
T Consensus 409 -----~~~~~l~~~L~~~Gi~v~~---~~~~~iRis~~~~~~t~edi~~--~~~~l~~~l~~~ 461 (465)
T 3e9k_A 409 -----VPNKDVFQELEKRGVVCDK---RNPNGIRVAPVPLYNSFHDVYK--FTNLLTSILDSA 461 (465)
T ss_dssp -----CTTCCHHHHHHTTTEECEE---ETTTEEEEBCCTTTCCHHHHHH--HHHHHHHHHTC-
T ss_pred -----CCHHHHHHHHHHCCEEEec---CCCCEEEEeCcccCCCHHHHHH--HHHHHHHHHHhc
Confidence 2356789999999998752 2248999999 79999999999 788888887643
No 50
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.88 E-value=1.7e-21 Score=223.45 Aligned_cols=313 Identities=13% Similarity=0.071 Sum_probs=212.5
Q ss_pred HHHHHHHHHHHHHhCCCcc-c-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH--HHHHHCCcEEEEE
Q 001989 632 EMFNNLGEWLCTITGFDSF-S-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP--ATAAMCGMKIVSV 707 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~-~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~--~~a~~~G~~vv~v 707 (985)
....++++.+++++|.+.. . ++.++|++++..++.++. .++++|++++..|..+. ..++..|++++.+
T Consensus 51 ~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v 122 (396)
T 2ch1_A 51 RTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL--------EEGDRVLIAVNGIWAERAVEMSERYGADVRTI 122 (396)
T ss_dssp HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--------CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhc--------CCCCeEEEEcCCcccHHHHHHHHHcCCceEEe
Confidence 3467899999999999865 3 455777777755544431 36789999888776664 2567889999999
Q ss_pred cCCCCCCCCHHHHHHHHHhcCC-CEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCc
Q 001989 708 GTDAKGNINIEELRKAAEANRD-NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGAD 785 (985)
Q Consensus 708 ~~d~~g~iD~e~L~~~i~~~~~-~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~D 785 (985)
|.++++.+|+++|+++++ + ++++|++++| |++|.+. |+++|.++|+++|+++++|+++..+...+ ....+++|
T Consensus 123 ~~~~~~~~d~~~l~~~l~---~~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~~li~Dea~~~g~~~~-~~~~~~~d 197 (396)
T 2ch1_A 123 EGPPDRPFSLETLARAIE---LHQPKCLFLTHGDSSSGLLQ-PLEGVGQICHQHDCLLIVDAVASLCGVPF-YMDKWEID 197 (396)
T ss_dssp ECCTTSCCCHHHHHHHHH---HHCCSEEEEESEETTTTEEC-CCTTHHHHHHHTTCEEEEECTTTBTTBCC-CTTTTTCC
T ss_pred cCCCCCCCCHHHHHHHHH---hCCCCEEEEECCCCCCceec-CHHHHHHHHHHcCCEEEEEccccccCCcc-chhhcCcC
Confidence 998888999999999998 4 6889999998 6799998 79999999999999999999986432221 23456789
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCC-------CCccccCCCCCCCCC---CCCCCCCCCcchhhhHHHHH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP-------SHPVVSTGGIPAPEK---SQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp-------~~~~g~~~~~~~~~~---~~~~~~i~s~~~g~~~~~~~ 855 (985)
+++.|+||+++ +++|+|++++++++...+. +..++.+.....+.. ....... . +.....+
T Consensus 198 ~~~~s~~K~~~-----~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~a 267 (396)
T 2ch1_A 198 AVYTGAQKVLG-----APPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHT-V----ASNLIFA 267 (396)
T ss_dssp EEECCCC-CCC-----CCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCC-C----CHHHHHH
T ss_pred EEEEcCCcccc-----CCCCeEEEEECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCC-C----cHHHHHH
Confidence 99999999984 3467899999876543321 101110000000000 0000000 1 1122233
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCc-ee-eEEEEEecCccccCCCCHHHHHHHHHHC-C
Q 001989 856 SYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGT-VA-HEFIVDLRGLKNTAGIEPEDVAKRLMDY-G 931 (985)
Q Consensus 856 a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~-~~-~~~iv~~~~~~~~~g~~~~~v~~~L~~~-G 931 (985)
+.+.+..+..+++.+..++..++++++.+.|++ ++.+. .+.+. .. ..+.+.++ .+.+..++.++|.++ |
T Consensus 268 ~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~L~~~~g 340 (396)
T 2ch1_A 268 LREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIF--VKDPRHRLPTVTGIMIP-----KGVDWWKVSQYAMNNFS 340 (396)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBS--SCSGGGBCTTEEEEECC-----TTCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCeec--cCCccccCCceEEEEcC-----CCCCHHHHHHHHHHhCC
Confidence 345566655567778888888999999999987 55542 22111 11 12345543 256788999999875 9
Q ss_pred CccCCCCCC-CCCEEEEec-cCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 932 FHGPTMSWP-VPGTLMIEP-TESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 932 i~~~~~~~p-~~~~lris~-t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
|.+.....+ .++.+||++ ....+++|+++ +++.|++++++++.
T Consensus 341 i~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~--~~~~l~~~l~~~~~ 385 (396)
T 2ch1_A 341 LEVQGGLGPTFGKAWRVGIMGECSTVQKIQF--YLYGFKESLKATHP 385 (396)
T ss_dssp BCCBCCCGGGTTTEEEEECCGGGCSHHHHHH--HHHHHHHHHHHHCT
T ss_pred EEEecCccccCCCEEEEECCCCcCCHHHHHH--HHHHHHHHHHHhCc
Confidence 987643211 357999999 45679999999 88999999887653
No 51
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.88 E-value=2.3e-21 Score=219.14 Aligned_cols=315 Identities=11% Similarity=0.081 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHHhCCCc---cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEc-CCCCcc-cHHHHHHCCcEEEEE
Q 001989 633 MFNNLGEWLCTITGFDS---FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIP-VSAHGT-NPATAAMCGMKIVSV 707 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~---~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~-~~~Hg~-~~~~a~~~G~~vv~v 707 (985)
...++++++++++|.+. ..++.++|++|+..++.++. .++++||+. ..+|+. +...+...|++++.+
T Consensus 38 ~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v 109 (366)
T 1m32_A 38 VVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSAL--------GPQDKVLIVSNGAYGARMVEMAGLMGIAHHAY 109 (366)
T ss_dssp THHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSC--------CTTCCEEEEESSHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhc--------CCCCeEEEEeCCCccHHHHHHHHHhCCceEEE
Confidence 45688899999999432 24566778877755544432 356777664 466654 334456789999999
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcE
Q 001989 708 GTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADV 786 (985)
Q Consensus 708 ~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di 786 (985)
|+++++.+|+++|++++++. +++++|++++| |++|.+. |+++|.++|+++|+++|+|++|..+...+ ....+++|+
T Consensus 110 ~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~Dea~~~~~~~~-~~~~~~~di 186 (366)
T 1m32_A 110 DCGEVARPDVQAIDAILNAD-PTISHIAMVHSETTTGMLN-PIDEVGALAHRYGKTYIVDAMSSFGGIPM-DIAALHIDY 186 (366)
T ss_dssp ECCTTSCCCHHHHHHHHHHC-TTCCEEEEESEETTTTEEC-CHHHHHHHHHHHTCEEEEECTTTTTTSCC-CTTTTTCSE
T ss_pred eCCCCCCCCHHHHHHHHhcC-CCeEEEEEecccCCcceec-CHHHHHHHHHHcCCEEEEECCccccCcCc-cccccCccE
Confidence 99888899999999999842 25788888887 5689998 89999999999999999999986433222 223467999
Q ss_pred EEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC-CCCC---CCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI-PAPE---KSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~-~~~~---~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
+++|+||+++ |++|+|++++++++.+.+.....+...+. ..+. ........+. +...+.++.+.+..
T Consensus 187 ~~~s~~K~~~-----~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~al~~ 257 (366)
T 1m32_A 187 LISSANKCIQ-----GVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTS----PTHTVLAFAQALKE 257 (366)
T ss_dssp EEEESSSTTC-----CCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCC----CHHHHHHHHHHHHH
T ss_pred EEecCccccc-----CCCceEEEEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCC----CHHHHHHHHHHHHH
Confidence 9999999984 34578999999877665532110000000 0000 0000000011 12222333455555
Q ss_pred hcHHH-HHHHHHHHHHHHHHHHHHhhc-cCCeeecC-CCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC
Q 001989 863 MGSKG-LTEASKIAILNANYMAKRLEK-HYPILFRG-VNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 863 lg~eG-l~~~~~~~~~~a~~l~~~L~~-g~~l~~~~-~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~ 939 (985)
+...| +.+..++..++++++.+.|++ ++.+..+. +... ..+.+.++. ..+.+..++.+.|.++||.+.....
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~l~~~gi~v~~~~~ 332 (366)
T 1m32_A 258 LAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSP--IITAFYSPE---DPQYRFSEFYRRLKEQGFVIYPGKV 332 (366)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCS--SEEEEECCC---CTTCCHHHHHHHHHHTTEECEECCC
T ss_pred HHHccCHhHHHHHHHHHHHHHHHHHHHCCCeeccCchhcCc--eEEEEEcCc---cCCCCHHHHHHHHHHCCEEEECCcC
Confidence 55555 677778888999999999987 44432210 0011 124455531 0145788999999999998753222
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 940 PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 940 p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
...+.+|++++..+|++||++ +++.|+++++++
T Consensus 333 ~~~~~iRi~~~~~~~~~~i~~--~~~~l~~~~~~~ 365 (366)
T 1m32_A 333 SQSDCFRIGNIGEVYAADITA--LLTAIRTAMYWT 365 (366)
T ss_dssp SSSCEEEEECCSSCCHHHHHH--HHHHHHHHCTTC
T ss_pred CCCCEEEEecCCCCCHHHHHH--HHHHHHHHHHhc
Confidence 235799999999999999999 778888776543
No 52
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.88 E-value=4e-21 Score=219.51 Aligned_cols=305 Identities=13% Similarity=0.056 Sum_probs=206.8
Q ss_pred HHHHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEE
Q 001989 632 EMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVS 706 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~ 706 (985)
+...++++.+++++|.+... ++.++|++|+..++.+++ ..++++|+++...|..+... ++..|++++.
T Consensus 59 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~-------~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 131 (390)
T 1elu_A 59 QLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLD-------WHQGDEILLTDCEHPGIIAIVQAIAARFGITYRF 131 (390)
T ss_dssp HHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSC-------CCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCC-------CCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEE
Confidence 45678999999999987644 556777777755544431 13678999998877665432 4567999999
Q ss_pred EcCC--CCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHH----HcCCEEEEEccccccccCCCCC
Q 001989 707 VGTD--AKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIH----DNGGQVYMDGANMNAQVGLTSP 779 (985)
Q Consensus 707 v~~d--~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~----~~galliVD~a~~~~~~~l~~p 779 (985)
+|.+ .++.+|+++|+++++ +++++|++++|+ ++|.+. |+++|.++|+ ++|+++++|+++..+...+ ..
T Consensus 132 v~~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~-~~ 206 (390)
T 1elu_A 132 FPVAATLNQGDAAAVLANHLG---PKTRLVILSHLLWNTGQVL-PLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPL-DF 206 (390)
T ss_dssp ECCGGGSSSSCHHHHHHTTCC---TTEEEEEEESBCTTTCCBC-CHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCC-CT
T ss_pred EcCCCCCCccchHHHHHHhcC---CCceEEEEeccccCCceec-CHHHHHHHHhhhhhhcCcEEEEEcccccCCcCC-Ch
Confidence 9986 568899999999997 789999999984 699998 8999999999 9999999999986443222 22
Q ss_pred CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCC-----C--CCC-C--CCCCCCCCCCcchhh
Q 001989 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGG-----I--PAP-E--KSQPLGTIAAAPWGS 849 (985)
Q Consensus 780 g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~-----~--~~~-~--~~~~~~~i~s~~~g~ 849 (985)
..++.|+++.|+||++. ||+|+|++++++++.+.+.....|+... . ..+ . +....++. +
T Consensus 207 ~~~~~d~~~~s~~K~~~-----~~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 275 (390)
T 1elu_A 207 SRLEVDYYAFTGHKWFA-----GPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATS------A 275 (390)
T ss_dssp TTSCCSEEEEESSSTTC-----CCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCC------C
T ss_pred hhcCCCEEEcccccccc-----CCCceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCC------C
Confidence 35678999999999763 5678999999988776654332221000 0 000 0 00000111 1
Q ss_pred hHHHHHHHHHHHHhcHHH-HHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH
Q 001989 850 ALILPISYTYIAMMGSKG-LTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eG-l~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~ 928 (985)
.....++.+.+..+..++ +.+..++..++++++.+.|++..++.+..+.....+.+.+.++ .+.+..++.++|.
T Consensus 276 ~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~ 350 (390)
T 1elu_A 276 YPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVD-----SPLGHRAIVQKLE 350 (390)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEEC-----SSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcC-----CCCCHHHHHHHHH
Confidence 122222334455554555 7777788889999999999862233222110001112345553 2457889999999
Q ss_pred HCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChh
Q 001989 929 DYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSE 968 (985)
Q Consensus 929 ~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~ 968 (985)
++||.+.... .++.+||+++..++++|+++ +++.|+
T Consensus 351 ~~gi~v~~~~--~~~~iRis~~~~~~~~~i~~--~~~~l~ 386 (390)
T 1elu_A 351 EQRIYLRTIA--DPDCIRACCHYITDEEEINH--LLARLA 386 (390)
T ss_dssp HTTEECEEET--TTTEEEEECCTTCCHHHHHH--HHHHHT
T ss_pred HCCEEEEecC--CCCeEEEecccCCCHHHHHH--HHHHHH
Confidence 9999875432 14799999999999999999 555554
No 53
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.88 E-value=1.8e-21 Score=223.05 Aligned_cols=310 Identities=15% Similarity=0.106 Sum_probs=210.2
Q ss_pred HHHHHHHHHHHHHHHhCCCcc--ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcc--cHHHHHHCCcEEE
Q 001989 630 YQEMFNNLGEWLCTITGFDSF--SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGT--NPATAAMCGMKIV 705 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~~--~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~--~~~~a~~~G~~vv 705 (985)
..+..+++++++++++|.+.. .++.++|++|+..++.++. .++++|++++..|.. +...++..|++++
T Consensus 65 ~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~ 136 (393)
T 1vjo_A 65 FLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAV--------EPGDVVLIGVAGYFGNRLVDMAGRYGADVR 136 (393)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--------CTTCEEEEEESSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhcc--------CCCCEEEEEcCChhHHHHHHHHHHcCCceE
Confidence 456778899999999999754 3556777777755554431 367899998876665 4555678899999
Q ss_pred EEcCCCCCCCCHHHHHHHHHhcCC-CEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC
Q 001989 706 SVGTDAKGNINIEELRKAAEANRD-NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~~~-~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g 783 (985)
.+|.++++.+|+++|+++++ + ++++|++++| |++|.+. |+++|.++|+++|+++++|+++..+...+ ....++
T Consensus 137 ~v~~~~~~~~d~~~l~~~l~---~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~~~-~~~~~~ 211 (393)
T 1vjo_A 137 TISKPWGEVFSLEELRTALE---THRPAILALVHAETSTGARQ-PLEGVGELCREFGTLLLVDTVTSLGGVPI-FLDAWG 211 (393)
T ss_dssp EEECCTTCCCCHHHHHHHHH---HHCCSEEEEESEETTTTEEC-CCTTHHHHHHHHTCEEEEECTTTTTTSCC-CTTTTT
T ss_pred EEecCCCCCCCHHHHHHHHh---hCCceEEEEeccCCCcceec-cHHHHHHHHHHcCCEEEEECCccccCcCC-cccccC
Confidence 99998888999999999998 5 7889999998 6799998 89999999999999999999986332221 234567
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcccccCcC-------CCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHH
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFL-------PSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~l-------p~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a 856 (985)
+|+++.|+||+|+.| .++|++++++++.+.+ .+..++.+...+.......... +. +.....++
T Consensus 212 ~di~~~s~sK~l~~~-----~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~----~~~~~~a~ 281 (393)
T 1vjo_A 212 VDLAYSCSQKGLGCS-----PGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHH-TA----PINLYYAL 281 (393)
T ss_dssp CSEEECCSSSTTCSC-----SSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCS-CC----CHHHHHHH
T ss_pred ccEEEEcCcccccCC-----CceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCC-CC----CHHHHHHH
Confidence 899999999998532 2789999997755433 1111110000000000000000 11 12223334
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCc-eeeEEEEEecCccccCCCCHHHHHHHHHHC-CCc
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGT-VAHEFIVDLRGLKNTAGIEPEDVAKRLMDY-GFH 933 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~-~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~-Gi~ 933 (985)
.+++..+..+++.+..++..++++++.+.|++ ++.+. .+.+. ..+.+.+.++ .+.+..++.++|.++ ||.
T Consensus 282 ~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~gi~ 354 (393)
T 1vjo_A 282 REALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLH--VEKEYRLPTLTTVCIP-----DGVDGKAVARRLLNEHNIE 354 (393)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBS--SCGGGBCSSEEEEECC-----TTCCHHHHHHHHHHHHCEE
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcCCccc--CCccccCCcEEEEEcC-----CCCCHHHHHHHHHhhCCEE
Confidence 45566655566778888889999999999987 44442 22111 1122345543 245788999999988 998
Q ss_pred cCCCC-CCCCCEEEEecc-CCCCHHHHHHHHccCChhHHH
Q 001989 934 GPTMS-WPVPGTLMIEPT-ESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 934 ~~~~~-~p~~~~lris~t-~~~t~eeId~~~~~~~l~~~~ 971 (985)
+.... +..++.+||++. ..++++++++ +++.|++++
T Consensus 355 v~~g~~~~~~~~iRis~~~~~~~~~~i~~--~~~~l~~~l 392 (393)
T 1vjo_A 355 VGGGLGELAGKVWRVGLMGFNSRKESVDQ--LIPALEQVL 392 (393)
T ss_dssp CEECCGGGTTTEEEEECCGGGCSHHHHHH--HHHHHHHHH
T ss_pred EecCccccCCCEEEEeCCccCChHHHHHH--HHHHHHHHh
Confidence 75432 223589999964 5567888999 777777654
No 54
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.88 E-value=7.2e-21 Score=225.13 Aligned_cols=354 Identities=11% Similarity=0.015 Sum_probs=226.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCc---cceecCCCCCCCC--CcHHHHHHHHhCCcccccc-CCChhh--HhhhHHH
Q 001989 140 KFSKFDEGLTESQMIEHMQKLASMNKV---YKSFIGMGYYNTH--VPPVILRNIMENPAWYTQY-TPYQAE--IAQGRLE 211 (985)
Q Consensus 140 ~lp~~~~~~se~e~~~~~~~l~~~n~~---~~~~lG~g~y~~~--~p~~v~~~i~~~~~~~t~~-~pyq~e--~sqg~l~ 211 (985)
.+| .++.++.+++++++++...+.. ...|+|- ++.. .|..+.+. ++++ ++++.. .+.+..+
T Consensus 45 ~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~-------~~~~~n~~~~~~~~~~~~~~ 113 (486)
T 1js3_A 45 TAP--QEPDTFEDILQDVEKIIMPGVTHWHSPYFFAY--FPTASSYPAMLADM-------LCGAIGCIGFSWAASPACTE 113 (486)
T ss_dssp SCC--SSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSS--SCCCCCHHHHHHHH-------HHHHHCCCCSSGGGCHHHHH
T ss_pred cCC--CCCCCHHHHHHHHHHHHhcCCCCCCCCCceEe--CCCCCCHHHHHHHH-------HHHHhCcCccccccChhHHH
Confidence 456 5789999999999997655532 2345553 3322 33334332 2222 444433 3444556
Q ss_pred HHHHHHHHHHHhcCCCCc---------ceeeccchHHHHHHHHHHhhhhc-C-----CC---------C-EEEEcCCCCh
Q 001989 212 SLLNFQTMIADLTGLPMS---------NASLLDEGTAAAEAMAMCNNIQK-G-----KK---------K-TFIIASNCHP 266 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~---------~~sl~~~~ta~~ea~~~a~~~~~-~-----~g---------~-~Vlv~~~~H~ 266 (985)
...+...++++++|++.+ .+.+++|||.++..++++.+... + .| + .|+++...|+
T Consensus 114 le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~ 193 (486)
T 1js3_A 114 LETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHS 193 (486)
T ss_dssp HHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCH
T ss_pred HHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcH
Confidence 666677899999999863 47899999966554444332110 0 02 2 3789999999
Q ss_pred hHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCCCE------eEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEE
Q 001989 267 QTIDICITRADGFDIKVVVSDL--------KDIDY-KSGDV------CGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVV 330 (985)
Q Consensus 267 s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~~t------~~V~v~~p-n~~G~v~di~~I~~~a~~~galli 330 (985)
++...++. .|++++.++. ++|++ +++++ .+|++++| |++|.++|+++|+++||++|++++
T Consensus 194 s~~~~~~~----~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lh 269 (486)
T 1js3_A 194 SVERAGLI----GGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLH 269 (486)
T ss_dssp HHHHHHHH----HTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHh----CCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEE
Confidence 99988764 4788888765 35665 65555 37888888 789999999999999999999999
Q ss_pred EEecCccccCCCCC-------CcccceEEEecC-ccccccCCCCCCcEEEEEEchh--hHhcC---CCceeeeeecCCCC
Q 001989 331 MATDLLALTILKPP-------GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQE--YKRMM---PGRIVGVSIDSSGK 397 (985)
Q Consensus 331 V~a~~~~lg~l~~~-------~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~--~~~~l---p~~~vG~t~d~~g~ 397 (985)
||+ .++.+.+..+ +-.++|++++++ |+++.|+ ++|+++++++ +.+.+ ++.+.+...+..+.
T Consensus 270 vD~-a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~-----~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~ 343 (486)
T 1js3_A 270 VDA-AYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNF-----DCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLI 343 (486)
T ss_dssp EEC-TTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCS-----SCEEEEESCHHHHHGGGC------------CCSC
T ss_pred Eeh-hhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCc-----ceEEEEEeCHHHHHHHhcCCchhhCCCcccccCC
Confidence 964 3443332211 124799999998 6665553 4689999764 34544 33333311100000
Q ss_pred cceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcce
Q 001989 398 PALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDT 477 (985)
Q Consensus 398 ~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~ 477 (985)
..|. .. .-+..||. ...++.++ +..+|.+|++++.++..++++++.+.|+++.+++++.++.++.
T Consensus 344 ~~~~-~~--~~~~~rr~----------~~~~~~~a--l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~ 408 (486)
T 1js3_A 344 TDYR-HW--QLPLGRRF----------RSLKMWFV--FRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGL 408 (486)
T ss_dssp CCGG-GS--SSCSCCCC----------THHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSE
T ss_pred CCcc-cc--CCCCCCch----------hHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCceeE
Confidence 0000 00 00111221 11222233 3567889999999999999999999999984499986566677
Q ss_pred EEEecCC----HHHHHHHHHHcCcee-ee--ec-CCeEEEEe-ccCCCHHHHHHHHHHHhC
Q 001989 478 VKVKCAD----AHAIASAAYKIEMNL-RV--VD-SNTVTASF-DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 478 ~~~~~~~----~~~v~~~L~~~GI~~-~~--~~-~~~lris~-t~~~t~edId~li~aL~~ 529 (985)
+.|..++ ..++.++|.++|+.+ .. +. .+.+|+++ +.++|++|||+++++|.+
T Consensus 409 v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~ 469 (486)
T 1js3_A 409 VCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRG 469 (486)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEecChHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 7777653 578899998888643 22 12 36799997 557899999999999974
No 55
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.88 E-value=2.7e-21 Score=222.65 Aligned_cols=307 Identities=15% Similarity=0.094 Sum_probs=199.9
Q ss_pred HHHHHHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH----HHCCcEE
Q 001989 630 YQEMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA----AMCGMKI 704 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a----~~~G~~v 704 (985)
..+...++++++++++|.+... ++.++|++++..++.++.. ...++++||++...|+++.... +..|+++
T Consensus 67 ~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~-----~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v 141 (406)
T 3cai_A 67 SAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSS-----RAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKV 141 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGG-----GGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhh-----ccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeE
Confidence 4566788999999999997544 4455666665444333210 0136789999988887654433 2369999
Q ss_pred EEEcCC-CCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 705 VSVGTD-AKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 705 v~v~~d-~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
+.+|++ +++.+|+++|+++++ +++++|++++|+ ++|.+. |+++|.++|+++|+++++|++|..+...+ ....+
T Consensus 142 ~~v~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~g~~~~-~~~~~ 216 (406)
T 3cai_A 142 KWAEVDIETGELPTWQWESLIS---KSTRLVAVNSASGTLGGVT-DLRAMTKLVHDVGALVVVDHSAAAPYRLL-DIRET 216 (406)
T ss_dssp EEECCCTTTCCCCGGGHHHHCC---TTEEEEEEESBCTTTCBBC-CCHHHHHHHHHTTCEEEEECTTTTTTCCC-CHHHH
T ss_pred EEEecCcccCCcCHHHHHHHhC---CCceEEEEeCCcCCccccC-CHHHHHHHHHHcCCEEEEEcccccCCCCC-Cchhc
Confidence 999998 678999999999997 789999999984 799998 89999999999999999999986432211 22346
Q ss_pred CCcEEEeCCcccccccCCCCCCceE-EEEEcccccCcCCCCc--cccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMG-PIGVKKHLAPFLPSHP--VVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G-~i~~~~~l~~~lp~~~--~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~ 859 (985)
++|++++|+||++ ||++| ++++++++.+.+.... ++... ......++.+. .+. .++.+++..
T Consensus 217 ~~d~~~~s~~K~~-------g~~~G~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~t~~~----~~~-~a~~~al~~ 281 (406)
T 3cai_A 217 DADVVTVNAHAWG-------GPPIGAMVFRDPSVMNSFGSVSTNPYATG---PARLEIGVHQF----GLL-AGVVASIEY 281 (406)
T ss_dssp CCSEEEEEGGGGT-------SCSCEEEEESCHHHHHTSCCCCSCTTCCG---GGGGCCSCCCH----HHH-HHHHHHHHH
T ss_pred CCCEEEeehhhhc-------CCCcCeEEEEehHHHhhcCCcccCCCCCc---cccccCCCccH----HHH-HHHHHHHHH
Confidence 7999999999976 24577 9999887665443221 11000 00000111111 111 111222223
Q ss_pred HHHhcH-----------HHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH
Q 001989 860 IAMMGS-----------KGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 860 l~~lg~-----------eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~ 928 (985)
+...|. +.+.+..++..++++++.+.|++..++...++.......+.+.++ +.+..++.+.|.
T Consensus 282 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~L~ 355 (406)
T 3cai_A 282 LAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVH------KVPADRVVQRLA 355 (406)
T ss_dssp HHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEET------TBCHHHHHHHHH
T ss_pred HHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEEC------CcCHHHHHHHHH
Confidence 322220 136667777888999999999873233222221111222445554 356889999999
Q ss_pred HCCCccCCCC-------CC---CCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 929 DYGFHGPTMS-------WP---VPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 929 ~~Gi~~~~~~-------~p---~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
++||.+.... +. ..+.+||+++..+|++|+++ +++.|++
T Consensus 356 ~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~--~~~~l~~ 404 (406)
T 3cai_A 356 DNGILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQ--LVRALAS 404 (406)
T ss_dssp HTTEECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHH--HHHHHHT
T ss_pred HCCcEEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHH--HHHHHHH
Confidence 9999875322 11 13789999999999999999 5555543
No 56
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.88 E-value=9e-20 Score=216.46 Aligned_cols=353 Identities=12% Similarity=0.079 Sum_probs=233.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHH
Q 001989 139 MKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQT 218 (985)
Q Consensus 139 ~~lp~~~~~~se~e~~~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~ 218 (985)
..+| ..+.+..++.+.+++....+.. ..+..+.+..+..++.+.+.+.+. +.. ..+.+..+.+..+...++++
T Consensus 30 ~~~p--~~~~~~~~~~~~~~~~i~l~gn-p~~~l~s~~t~~~~~~v~~~l~~~---~~~-~~~~~~~~p~~~~le~~~~~ 102 (502)
T 3hbx_A 30 FKMP--ENSIPKEAAYQIINDELMLDGN-PRLNLASFVTTWMEPECDKLIMSS---INK-NYVDMDEYPVTTELQNRCVN 102 (502)
T ss_dssp SSCC--SSCCCHHHHHHHHHHHGGGSCC-GGGBTTCCSCCCCCHHHHHHHHHT---TTC-BTTCTTTCHHHHHHHHHHHH
T ss_pred CCCC--CCCCCHHHHHHHHHHHhccCCC-CCceeccccCCCCCHHHHHHHHHH---hcc-CCCChhcChhHHHHHHHHHH
Confidence 3466 4678999999999876543321 111123344456777776554432 111 11122345567788888999
Q ss_pred HHHHhcCCC--Ccc---eeeccchHHHHHHHHHHhhhh-----cCCCC-----EEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001989 219 MIADLTGLP--MSN---ASLLDEGTAAAEAMAMCNNIQ-----KGKKK-----TFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 219 ~ia~L~g~~--~~~---~sl~~~~ta~~ea~~~a~~~~-----~~~g~-----~Vlv~~~~H~s~~~~~~~~a~~~gi~v 283 (985)
++++++|++ ..+ ..++.|||.++..++++.+.. +.+|+ +|++++..|+++...++. .|+++
T Consensus 103 ~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~----~G~~~ 178 (502)
T 3hbx_A 103 MIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARY----FEVEL 178 (502)
T ss_dssp HHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHH----TTCEE
T ss_pred HHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHH----cCcee
Confidence 999999998 332 334788887666555543221 01244 999999999998888653 58888
Q ss_pred EEeCc---------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhC------CcEEEEEecCccccC---CCC
Q 001989 284 VVSDL---------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHAN------GVKVVMATDLLALTI---LKP 343 (985)
Q Consensus 284 ~~v~~---------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~------galliV~a~~~~lg~---l~~ 343 (985)
+.++. ++|++ ++++|++|++++| |++|.+.|+++|+++||++ |++++||+ .++.++ +.+
T Consensus 179 ~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~-A~~~~~~p~~~~ 257 (502)
T 3hbx_A 179 KEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDA-ASGGFIAPFLYP 257 (502)
T ss_dssp EEECCBTTBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEEC-TTGGGTHHHHCT
T ss_pred EEEecCCCcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEEC-CccchhhhhhCc
Confidence 88764 34555 8889999999987 6799999999999999999 99999953 233111 111
Q ss_pred C-----CcccceEEEecCccccccCCCCCCcEEEEEEch-hhH-hcCCC--ceeeeeecCCCCcceeeeccccccccccc
Q 001989 344 P-----GELGADIVVGSAQRFGVPMGYGGPHAAFLATSQ-EYK-RMMPG--RIVGVSIDSSGKPALRVAMQTREQHIRRD 414 (985)
Q Consensus 344 ~-----~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~-~~~-~~lp~--~~vG~t~d~~g~~~~~l~l~tre~~irre 414 (985)
. ...|+|++++++++++ +|++++|++++++ +.+ +.+.. ...|. ....|.+
T Consensus 258 ~~~~~~~~~~~D~v~~s~hK~l----~~p~g~G~~~~~~~~~l~~~~~~~~~yl~~-----~~~~~~~------------ 316 (502)
T 3hbx_A 258 ELEWDFRLPLVKSINVSGHKYG----LVYAGIGWVIWRNKEDLPEELIFHINYLGA-----DQPTFTL------------ 316 (502)
T ss_dssp TCCCSTTSTTEEEEEEETTTTT----CCCSSCEEEEESSGGGSCGGGCEEECSSSS-----CEEECCS------------
T ss_pred ccccccCCCCceEEEECccccc----CCCCCeEEEEEeCHHHhhHHhccCcccccC-----CCCCccc------------
Confidence 1 2358999999995553 2345678888875 333 11100 00110 0000100
Q ss_pred ccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-CCcceEEEecCC-----HHHH
Q 001989 415 KATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCAD-----AHAI 488 (985)
Q Consensus 415 ~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~~-----~~~v 488 (985)
.++.+. ....++.++ +..+|.+|++++.++..+++++|+++|+++|+++++.+ +..+.+.|+.++ ..++
T Consensus 317 ~~sr~~---~~~~a~~~a--l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l 391 (502)
T 3hbx_A 317 NFSKGS---SQVIAQYYQ--LIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEI 391 (502)
T ss_dssp CCSCBS---HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHH
T ss_pred cCCchH---HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHH
Confidence 011111 122233333 36678899999999999999999999999977999865 566777776542 5699
Q ss_pred HHHHHHcCceeeeec-------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 489 ASAAYKIEMNLRVVD-------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 489 ~~~L~~~GI~~~~~~-------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++|.++||.++... ...+|++++..+|+||+|+|+++|.+
T Consensus 392 ~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~ 439 (502)
T 3hbx_A 392 SDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEK 439 (502)
T ss_dssp HHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 999999999875331 24799999999999999999999985
No 57
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.88 E-value=3.1e-21 Score=217.15 Aligned_cols=307 Identities=11% Similarity=0.049 Sum_probs=206.2
Q ss_pred HHHHHHHHHHHHHHHhCCCcc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH--HHHHHCCcEEEE
Q 001989 630 YQEMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP--ATAAMCGMKIVS 706 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~--~~a~~~G~~vv~ 706 (985)
..+...++++++++++|.+.. .++.++|++|+..++.++. .++++|++++..|.++. ..++..|++++.
T Consensus 32 ~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~ 103 (352)
T 1iug_A 32 AREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF--------APGERVLVPVYGKFSERFYEIALEAGLVVER 103 (352)
T ss_dssp HHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC--------CTTCEEEEEECSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhcc--------CCCCeEEEEeCCchhHHHHHHHHHcCCceEE
Confidence 345577899999999999753 3556777877755554431 36789999887666654 223558999999
Q ss_pred EcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHc--CCEEEEEccccccccCCCCCCccC
Q 001989 707 VGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDN--GGQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 707 v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~--galliVD~a~~~~~~~l~~pg~~g 783 (985)
+|+++++.+|+++|++ +++++|++++| |++|.+. |+++|.++|+++ |+++|+|++|..+...+ ....++
T Consensus 104 v~~~~~~~~d~~~l~~------~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~-~~~~~~ 175 (352)
T 1iug_A 104 LDYPYGDTPRPEDVAK------EGYAGLLLVHSETSTGALA-DLPALARAFKEKNPEGLVGADMVTSLLVGEV-ALEAMG 175 (352)
T ss_dssp EECCTTCCCCTTTSCC------SSCSEEEEESEETTTTEEC-CHHHHHHHHHHHCTTCEEEEECTTTBTTBCC-CSGGGT
T ss_pred EeCCCCCCCCHHHHhc------cCCcEEEEEEecCCcceec-CHHHHHHHHHhhCCCCEEEEECCccccCcce-eccccC
Confidence 9998888899988765 36778999998 5799998 899999999999 99999999986433222 233457
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCC-C-CCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGG-I-PAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~-~-~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~ 861 (985)
+|++++|+||++. |++|+|++++++++.+.+.......... . .........++. +.....++.+.+.
T Consensus 176 ~d~~~~s~~K~~~-----~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~a~~~al~ 244 (352)
T 1iug_A 176 VDAAASGSQKGLM-----CPPGLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTP------AINLVLAVAAVLE 244 (352)
T ss_dssp CSEEEEESSSTTC-----CCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCC------CHHHHHHHHHHHH
T ss_pred eeEEEecCccccc-----CCCceeEEEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCC------CHHHHHHHHHHHH
Confidence 9999999999874 3347899999877554332100000000 0 000000001111 1122222334455
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC
Q 001989 862 MMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP 940 (985)
Q Consensus 862 ~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p 940 (985)
.+... +.+..++..++++++.+.|++ ++.+. .+. ...+.+.+.++ .+.+..++.++|.++||.+.....+
T Consensus 245 ~~~~~-~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~-~~~~~~~~~~~-----~~~~~~~~~~~l~~~gi~v~~~~~~ 315 (352)
T 1iug_A 245 EVLPR-LEEHLALKAWQNALLYGVGEEGGLRPV--PKR-FSPAVAAFYLP-----EGVPYARVKEAFAQRGAVIAGGQGP 315 (352)
T ss_dssp HHGGG-HHHHHHHHHHHHHHHHHHHHHTTCEES--CSS-BCTTCEEEECC-----TTCCHHHHHHHHHTTTEECEECCGG
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHCCCccc--ccc-cCCeEEEEEcC-----CCCCHHHHHHHHHHCCEEEEeCCCc
Confidence 54444 677777888999999999987 34332 221 01112445554 2467889999999999987543222
Q ss_pred -CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 941 -VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 941 -~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
..+.+||+++..+|++|+++ +++.|+++++++
T Consensus 316 ~~~~~iRi~~~~~~~~~~i~~--~~~~l~~~~~~~ 348 (352)
T 1iug_A 316 LKGKVFRLSLMGAYDRYEALG--VAGMFREVLEEI 348 (352)
T ss_dssp GTTTEEEECCCSSCCHHHHHH--HHHHHHHHHHHH
T ss_pred cCCCEEEEEccccCCHHHHHH--HHHHHHHHHHHh
Confidence 24799999999999999999 888999888765
No 58
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.88 E-value=1.9e-21 Score=222.58 Aligned_cols=317 Identities=14% Similarity=0.065 Sum_probs=205.5
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH--HHHHHCC--cE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP--ATAAMCG--MK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~--~~a~~~G--~~ 703 (985)
+.+.++++++++.+++++|.+...++++||++|+++++ +.+ .++++||+++..|..+. ..++..| .+
T Consensus 31 ~~~~~~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~---~~~------~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~ 101 (379)
T 3ke3_A 31 KAFQEVMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVA---RQL------TIDEDCLIIRNGWFSYRWTQILEKGKFAKS 101 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH---HHH------CTTCEEEEEECSHHHHHHHHHHHHHCCSSE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHH---HhC------CCCCeEEEEeCCchhHHHHHHHHHhCCCCc
Confidence 34557888999999999999855566678888876543 222 36789998776443332 2234445 58
Q ss_pred EEEEcCCCC---------CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEcccc
Q 001989 704 IVSVGTDAK---------GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANM 770 (985)
Q Consensus 704 vv~v~~d~~---------g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~ 770 (985)
++.++++++ +.+|+++|+++++. +++++|+++++ |.+|.+. | +++|+++||++|+++++|++|.
T Consensus 102 ~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~~~G~~~-~~~~l~~i~~~~~~~~~~li~D~~~~ 178 (379)
T 3ke3_A 102 STVLTAERTEDTEAPKPFAPVDIETAVAKIKE--DKSAIVYAPHVETSSGIIL-SEEYIKALSEAVHSVGGLLVIDCIAS 178 (379)
T ss_dssp EEEEECEESSCCSSCCCEECCCHHHHHHHHHH--HTCSEEEEESEETTTTEEC-CHHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred eEEEeccccccccccCCCCCCCHHHHHHHHhh--cCCcEEEEEeecCCCceeC-CHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 888887432 36899999999962 36778888875 5689998 8 9999999999999999999985
Q ss_pred ccccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCC-CccccCCCCCCC-----CCCCCCCCCCC
Q 001989 771 NAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS-HPVVSTGGIPAP-----EKSQPLGTIAA 844 (985)
Q Consensus 771 ~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~-~~~g~~~~~~~~-----~~~~~~~~i~s 844 (985)
+.. ......+++|++++++||+|+ |++|+|++++++++.+.+.. ...+...+...+ ..+.+......
T Consensus 179 -g~~-~~~~~~~~~d~~~~s~~K~l~-----~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 251 (379)
T 3ke3_A 179 -GCV-WLDMKELGIDVLISAPQKGWS-----STPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHA 251 (379)
T ss_dssp -TTC-CCCHHHHTCSEEEECTTTTTC-----SCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSS
T ss_pred -CCc-cccccccCCCEEEecchhhcC-----CCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCC
Confidence 321 123345689999999999984 34589999999876543321 100000000000 00000000000
Q ss_pred cchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceee-EEEEEecCccccCCCCHHH
Q 001989 845 APWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAH-EFIVDLRGLKNTAGIEPED 922 (985)
Q Consensus 845 ~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~-~~iv~~~~~~~~~g~~~~~ 922 (985)
++ +...+.+..+.+..+..+|+.++.++..+++++++++|++ ++++... + ..... .+.+..+ + ....
T Consensus 252 t~--~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~-~-~~~~~~i~~~~~~------~-~~~~ 320 (379)
T 3ke3_A 252 TM--PTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIESVAA-E-GFEAPGVVVSYTE------R-DDMH 320 (379)
T ss_dssp CC--CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBC-T-TCBCSSEEEEECS------C-HHHH
T ss_pred CC--CHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCC-c-cccCceEEEEccC------C-cchH
Confidence 00 1122223335566666778888888899999999999987 5665322 1 11111 1222222 1 1122
Q ss_pred HHHHHHHCCCccCCCCC-----CC-CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 923 VAKRLMDYGFHGPTMSW-----PV-PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 923 v~~~L~~~Gi~~~~~~~-----p~-~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+.+.|.++||.+..... |. .+.+||+++.++|++|||+ +++.|+++++++.+
T Consensus 321 ~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~--~~~~l~~~l~~~~~ 378 (379)
T 3ke3_A 321 KGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDG--TVERFEKALDEVLA 378 (379)
T ss_dssp SSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHH--HHHHHHHHHHHHHC
T ss_pred HHHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHH--HHHHHHHHHHHhcc
Confidence 36788999998653221 21 5789999999999999999 88999999887753
No 59
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.87 E-value=5.4e-21 Score=217.29 Aligned_cols=315 Identities=11% Similarity=0.062 Sum_probs=219.0
Q ss_pred CCcHHHHHHHHhCCcccccc--CCCh----hhHhhhHHHHHHHHHHHHHHhcCCCC-cceee-ccchHHHHHHHHHHhhh
Q 001989 179 HVPPVILRNIMENPAWYTQY--TPYQ----AEIAQGRLESLLNFQTMIADLTGLPM-SNASL-LDEGTAAAEAMAMCNNI 250 (985)
Q Consensus 179 ~~p~~v~~~i~~~~~~~t~~--~pyq----~e~sqg~l~~i~e~q~~ia~L~g~~~-~~~sl-~~~~ta~~ea~~~a~~~ 250 (985)
.+|+.|.+++..- +..| +|-. ...++...+.+.++++.+++|+|++. .++.+ +.|+|.++++++..+.
T Consensus 23 ~~p~~Vl~a~~~~---~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~- 98 (377)
T 3e77_A 23 MLPHSVLLEIQKE---LLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLI- 98 (377)
T ss_dssp CCCHHHHHHHHHT---SSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHG-
T ss_pred CCCHHHHHHHHHH---HHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhcc-
Confidence 4888887665542 3222 1111 11245567899999999999999975 45777 4788988887776543
Q ss_pred hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCCCEeEEEEEc-CCCCeeeccHHHHHH
Q 001989 251 QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSGDVCGVLVQY-PGTEGEVLDYGDFIK 320 (985)
Q Consensus 251 ~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~~t~~V~v~~-pn~~G~v~di~~I~~ 320 (985)
..++||+|++....|.+. .|...++..|+++++++. ++++. ++++|++|++++ .|.+|++.|+
T Consensus 99 ~~~~Gd~v~~~~~g~~~~--~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pi----- 171 (377)
T 3e77_A 99 GLKAGRCADYVVTGAWSA--KAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDF----- 171 (377)
T ss_dssp GGSTTCEEEECCCSHHHH--HHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCCCTTCSCEEEESEETTTTEECSS-----
T ss_pred CCCCCCeEEEEECCHHHH--HHHHHHHHhCCceEEeccCCCcCCCCChHHhccCCCccEEEEeCccCchheEchh-----
Confidence 212489998888777654 455567788988887654 34444 788999998886 4889999999
Q ss_pred HHHhCCcEEEEEecCccccCC-CCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcc
Q 001989 321 NAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPA 399 (985)
Q Consensus 321 ~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~ 399 (985)
+++++|++++||+ ..++|.+ .+..+|| ++++++||+.+| ||+|++++++++++++++...+
T Consensus 172 i~~~~~~~~~vD~-~q~~g~~~id~~~~~--~~~~s~~K~~gp-----~G~g~l~~~~~~l~~~~~~~p~---------- 233 (377)
T 3e77_A 172 IPDVKGAVLVCDM-SSNFLSKPVDVSKFG--VIFAGAQKNVGS-----AGVTVVIVRDDLLGFALRECPS---------- 233 (377)
T ss_dssp CCCCTTCCEEEEC-TTTTTSSCCCGGGCS--EEEEEGGGTTSC-----TTCEEEEEETTSCSCCCTTSCG----------
T ss_pred hhccCCCEEEEEc-ccccCCCCCchhhcC--EEEEecccccCC-----CccEEEEEcHHHHhhccCCCCc----------
Confidence 4678999999964 4466654 3446777 467888555234 6789999999988777543211
Q ss_pred eeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHHHHHHhcCCCeEEcC-C--CCc
Q 001989 400 LRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKLGTVEVQG-L--PFF 475 (985)
Q Consensus 400 ~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~--~~~ 475 (985)
| +++....+ .....+|+|+ .+++++.+++ .++..+ |++++.++..+++++++++|++++|+.+.. + ...
T Consensus 234 ~-~~~~~~~~-~~~~~~Tp~v---~~i~~l~~al--~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs 306 (377)
T 3e77_A 234 V-LEYKVQAG-NSSLYNTPPC---FSIYVMGLVL--EWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRS 306 (377)
T ss_dssp G-GCHHHHHT-TTTCSSCCCH---HHHHHHHHHH--HHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBC
T ss_pred h-hhHHHHhh-cCCCCCCchH---HHHHHHHHHH--HHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcC
Confidence 1 11111101 1123467777 6777888877 566667 899999999999999999999984488642 2 122
Q ss_pred c-eEEEecCC--H-----HHHHHHHHHcCceeeee--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 476 D-TVKVKCAD--A-----HAIASAAYKIEMNLRVV--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 476 ~-~~~~~~~~--~-----~~v~~~L~~~GI~~~~~--~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. .++|++++ + ..+.+.|.++||.+..- ..+.+|+|+..++|+||||+|+++|++
T Consensus 307 ~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~ 370 (377)
T 3e77_A 307 KMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKK 370 (377)
T ss_dssp SSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3 36677664 2 35677777899987432 236799999999999999999999974
No 60
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.87 E-value=2.3e-20 Score=215.26 Aligned_cols=331 Identities=13% Similarity=0.096 Sum_probs=222.7
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCccee-eccchHHHHHHHHHHhh
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNAS-LLDEGTAAAEAMAMCNN 249 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~s-l~~~~ta~~ea~~~a~~ 249 (985)
++.| |..+|+.+.+. +.+..+ ..|.+. ..+...++++++++++|.+.+++. +..++|.++++++.++
T Consensus 15 ~~p~--p~~~~~~v~~a-~~~~~~----~~~~~~----~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l- 82 (416)
T 3isl_A 15 MTPG--PVEVDPRVLRV-MSTPVV----GQFDPA----FTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASV- 82 (416)
T ss_dssp CSSS--SCCCCHHHHHH-TTSCCC----CTTSHH----HHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHH-
T ss_pred ecCC--CcCcCHHHHHH-hcccCC----CCccHH----HHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHh-
Confidence 4444 55677777644 333221 122222 246677899999999999887665 6678888888777665
Q ss_pred hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cC-CCEeEEEEEcC-CCCeeeccHHHH
Q 001989 250 IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KS-GDVCGVLVQYP-GTEGEVLDYGDF 318 (985)
Q Consensus 250 ~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~-~~t~~V~v~~p-n~~G~v~di~~I 318 (985)
+ ++||+|+++...|+++. +...++..|++++.++. ++|++ ++ +++++|++.+| |.+|.+.|+++|
T Consensus 83 ~--~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i 158 (416)
T 3isl_A 83 I--EPEDDVLIPIYGRFGYL--LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAI 158 (416)
T ss_dssp C--CTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHH
T ss_pred c--CCCCEEEEecCCcccHH--HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHH
Confidence 3 38999999999998732 22223456888888754 34555 65 58899999987 889999999999
Q ss_pred HHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCc---eeeeeec
Q 001989 319 IKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGR---IVGVSID 393 (985)
Q Consensus 319 ~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~---~vG~t~d 393 (985)
.++||++|+++++| ..++.+.+. +..++|+|+++++. |+++ |++|+|++++++++.+.+... .+||...
T Consensus 159 ~~l~~~~~~~li~D-~a~~~~~~~~~~~~~~~d~~~~s~~K~l~-----g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~ 232 (416)
T 3isl_A 159 GEACRTEDALFIVD-AVATIGGCEVKVDEWKIDAAIGGTQKCLS-----VPSGMAPITYNERVADVIAARKKVERGIATQ 232 (416)
T ss_dssp HHHHHHTTCEEEEE-CTTTTTTSCCCTTTTTCSEEECCSSSTTC-----CCSSEEEEEECHHHHHHHHTC----------
T ss_pred HHHHHHcCCEEEEE-CCccccCCCcchhhcCCCEEEecCccccC-----CCCCeEEEEECHHHHHHhhcccccccccccc
Confidence 99999999999995 345555442 34678999999998 6564 345689999999888776432 2444210
Q ss_pred C------CC--Ccceeeeccc-c--cccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHh
Q 001989 394 S------SG--KPALRVAMQT-R--EQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLK 462 (985)
Q Consensus 394 ~------~g--~~~~~l~l~t-r--e~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~ 462 (985)
. .| ...+.++... + .+..+.+.+|.|+ ....++.+++ ..+...|++++.++..++++++.+.|+
T Consensus 233 ~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~al--~~~~~~g~~~~~~~~~~~~~~l~~~L~ 307 (416)
T 3isl_A 233 ADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEAT---TMLYALREGV--RLVLEEGLETRFERHRHHEAALAAGIK 307 (416)
T ss_dssp --------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCH---HHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 0111111100 0 0122233455554 3344444443 455556799999999999999999999
Q ss_pred cCCCeEEcCCC--C-cceEEEecC-C--HHHHHHHHHHc-Cceeee----ecCCeEEEEeccCCCHHH-HHHHHHHHhC
Q 001989 463 KLGTVEVQGLP--F-FDTVKVKCA-D--AHAIASAAYKI-EMNLRV----VDSNTVTASFDETTTLED-VDKLFIVFAG 529 (985)
Q Consensus 463 ~~g~~~~~~~~--~-~~~~~~~~~-~--~~~v~~~L~~~-GI~~~~----~~~~~lris~t~~~t~ed-Id~li~aL~~ 529 (985)
+.| +++..+. . ...+.+..+ + ..++.+.|.++ ||.++. ..++.+|++++.++|.+| +++++++|++
T Consensus 308 ~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~ 385 (416)
T 3isl_A 308 AMG-LRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEA 385 (416)
T ss_dssp HTT-CCBCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred HcC-CEeccCccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHH
Confidence 986 8876432 1 234556664 2 88999999887 998864 235789999988877777 9999999974
No 61
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.87 E-value=7.1e-21 Score=218.48 Aligned_cols=308 Identities=11% Similarity=0.041 Sum_probs=188.0
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEcCCCCcccHHHHH---HCCc
Q 001989 628 QGYQEMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRN-VCIIPVSAHGTNPATAA---MCGM 702 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~-~IIv~~~~Hg~~~~~a~---~~G~ 702 (985)
.+..+..+++++++++++|.+... ++.++|++|+..++.++..+.. .++| +||++...|+++..... ..|+
T Consensus 59 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~~~~----~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~ 134 (400)
T 3vax_A 59 IRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAPYGE----RTGRRHIITSAIEHKAVLEPLEHLAGRGF 134 (400)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHHHHH----HHTCCEEEEETTSCHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHHhhc----cCCCCEEEECccccHhHHHHHHHHHhcCC
Confidence 345567889999999999998644 5566777777666655532211 2568 99999887877655433 3699
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCc
Q 001989 703 KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY 781 (985)
Q Consensus 703 ~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~ 781 (985)
+++.+|+++++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+++|+++++|++|..+.... ....
T Consensus 135 ~~~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~la~~~~~~li~D~a~~~~~~~~-~~~~ 209 (400)
T 3vax_A 135 EVDFLTPGPSGRISVEGVMERLR---PDTLLVSLMHVNNETGVIQ-PVAELAQQLRATPTYLHVDAAQGYGKVPG-DLTT 209 (400)
T ss_dssp EEEEECCCTTCCCCHHHHHTTCC---TTEEEEECCSBCTTTCBBC-CHHHHHHHHTTSSCEEEEECTTTTTTSGG-GGGS
T ss_pred eEEEEccCCCCCcCHHHHHHhcC---CCceEEEEECCCCCceeeC-cHHHHHHHHHhcCCEEEEEhhhhcCCCCc-Chhh
Confidence 99999998899999999999997 78999999998 4699998 89999999999999999999986332221 1223
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEE-Eccc-cc---CcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIG-VKKH-LA---PFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~-~~~~-l~---~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a 856 (985)
+ +|++++|+||++ |++|+|+++ ++++ +. ..+.....+.... .....++.+ ...+.+.
T Consensus 210 ~-~d~~~~s~~K~~------g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--------~~~~~a~ 271 (400)
T 3vax_A 210 P-IDMISISGHKIG------APKGVGALVTRRREEMDDERVPLEPIMFGGGQE---RKLRPGTLP--------VPLIMGL 271 (400)
T ss_dssp C-CSEEEEETGGGT------SCSSCEEEEECBCSSSTTCBCCCCCSSCSSCTG---GGTSCSCCC--------HHHHHHH
T ss_pred c-CcEEEEeHHHhC------CCCceEEEEEecchhccccccccCceecCCCce---eeeecCCCC--------HHHHHHH
Confidence 4 899999999954 334688888 8762 22 1222211111000 000001111 1111112
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCc-eeeEEEEEecCccccCCCCHHHHHHHHHHCCCccC
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGT-VAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP 935 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~-~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~ 935 (985)
.+.+..+ .+++++..++..++++++.+.|+ ..++....+... ..+.+.+.++ +.+..++.+.|. +||.+.
T Consensus 272 ~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~L~-~gi~v~ 342 (400)
T 3vax_A 272 AEAAKIF-EAEHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQDHVVPHILNLSFE------DVDAEAFLVTLK-DLVAVA 342 (400)
T ss_dssp HHHHHHH-HHSHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTTSBCTTEEEEECT------TCCHHHHHHHHH-HHHHHT
T ss_pred HHHHHHH-HhhHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCcccCCCCEEEEEeC------CCCHHHHHHHHh-cCcEEE
Confidence 2333333 34567777888899999999997 323322222111 1122444443 467889999999 999764
Q ss_pred CCC---------------CCC-----CCEEEEec-cCCCCHHHHHHHHccCChhHHHHh
Q 001989 936 TMS---------------WPV-----PGTLMIEP-TESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 936 ~~~---------------~p~-----~~~lris~-t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.-. ++. .+.+||++ +..+|++|+++ +++.|++++++
T Consensus 343 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~--~~~~l~~~~~~ 399 (400)
T 3vax_A 343 TGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEE--LARGVAKLKPS 399 (400)
T ss_dssp TTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC----------------------
T ss_pred ecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHH--HHHHHHHHhcc
Confidence 311 111 38999999 99999999999 88888887653
No 62
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.87 E-value=3.4e-20 Score=211.13 Aligned_cols=321 Identities=13% Similarity=0.090 Sum_probs=223.6
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCC--cceeeccchHHHHHHHHHHh
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPM--SNASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~--~~~sl~~~~ta~~ea~~~a~ 248 (985)
++.| |..+|+.+.+++... +..+ + +....+.+.++++.+++++|.+. .++.+++|+|.+++ ++.++
T Consensus 6 ~~~g--p~~~~~~v~~a~~~~---~~~~--~----~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~ 73 (384)
T 3zrp_A 6 LHVG--PTTIKEDVLVAGLEN---NVGF--T----SKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSL 73 (384)
T ss_dssp CCSS--CSCCCHHHHHHTTCC---SCCT--T----SHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGG
T ss_pred ccCC--CCCCCHHHHHHhhcc---cccc--c----cHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhh
Confidence 3445 345777776554432 2211 1 12235677889999999999988 78989999998877 55433
Q ss_pred hhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHH
Q 001989 249 NIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGD 317 (985)
Q Consensus 249 ~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~-~t~~V~v~~p-n~~G~v~di~~ 317 (985)
+ ++||+|++++..|++. .+..+++..|++++.++. +++++ +++ ++++|++.+| |.+|.+.|+++
T Consensus 74 -~--~~gd~vi~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~ 148 (384)
T 3zrp_A 74 -L--KPNDKILVVSNGVFGD--RWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKD 148 (384)
T ss_dssp -C--CTTCEEEEECSSHHHH--HHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHH
T ss_pred -c--CCCCEEEEecCCcchH--HHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHH
Confidence 2 3899999999988763 333445667999988865 34555 555 7999999987 88999999999
Q ss_pred HHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcC-CCceeeeeecC
Q 001989 318 FIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMM-PGRIVGVSIDS 394 (985)
Q Consensus 318 I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~l-p~~~vG~t~d~ 394 (985)
|.++|+++|+++++| +.++.+... ...++|+|+++++. |+|+ |++|+|++++++++++.+ .+..
T Consensus 149 i~~l~~~~~~~li~D-~a~~~~~~~~~~~~~~~d~~~~s~~K~~~-----~~~g~g~~~~~~~~~~~~~~~~~------- 215 (384)
T 3zrp_A 149 VINKIRKYVELIVVD-GVSSVGAEEVKAEEWNVDVYLTASQKALG-----SAAGLGLLLLSPKALSILDSQNS------- 215 (384)
T ss_dssp HHHHHGGGEEEEEEE-CTTTTTTSCCCTTTTTCSEEEEETTSTTC-----CCSSEEEEEECHHHHHHHHHCCC-------
T ss_pred HHHHHHhcCCEEEEE-CcccccCccccccccCCCEEEecCccccc-----CCCceEEEEECHHHHHHhcCCCC-------
Confidence 999999999999995 345555442 34568999999998 7674 345689999999887766 3210
Q ss_pred CCCcceeeeccccccc-cccc------ccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCe
Q 001989 395 SGKPALRVAMQTREQH-IRRD------KATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 395 ~g~~~~~l~l~tre~~-irre------~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~ 467 (985)
..++.+++...... .+++ .||.|+ ....++.+++ .++..+|++++.++..++++++.+.|+++| +
T Consensus 216 --~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~a~~~al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~ 287 (384)
T 3zrp_A 216 --IAGYYLDLRNWLPVMRGAEEGKAAYFATPPV---HVILQLAEAF--RLIEKEGIENRIKRHTMVASAIRAGLEALG-L 287 (384)
T ss_dssp --SCCSTTCHHHHHHHHHHHHTTCCCCSSCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-C
T ss_pred --CCcccccHHHHHHHHHhhcccCCCcCCCCCH---HHHHHHHHHH--HHHHhcCHHHHHHHHHHHHHHHHHHHHHCC-C
Confidence 11122221110000 1111 134444 3343444443 455566899999999999999999999996 8
Q ss_pred EEcCCC----CcceEEEecCC--HHHHHHHHHHcCceeeeec---CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 468 EVQGLP----FFDTVKVKCAD--AHAIASAAYKIEMNLRVVD---SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 468 ~~~~~~----~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~~---~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++..+. ....+.+..++ ..++.+.|.++||.++... .+.+|++++.++|++|+|+++++|.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~ 358 (384)
T 3zrp_A 288 EIVARRPESYSNTVTGVILKVADPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIER 358 (384)
T ss_dssp CBSCSSGGGBCSSEEEEECSSSCHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred eEccCcccccCccEEEEECCCCCHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHH
Confidence 876432 12334566664 8899999999999886422 16799999999999999999999974
No 63
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.86 E-value=1.7e-19 Score=205.36 Aligned_cols=291 Identities=16% Similarity=0.126 Sum_probs=209.4
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001989 206 AQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 206 sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~ 284 (985)
+.+..+.+.++++.+++++|.++.++.+++|+|.+++.++.++. ...++||+|++++..|+++...++.. +..|++++
T Consensus 38 ~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-~~~g~~~~ 116 (382)
T 4eb5_A 38 GFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFL-QKQGFEVE 116 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHH-TTTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHHHH-HhCCcEEE
Confidence 45567788899999999999987788899999998888776653 10127899999999999999888653 34788988
Q ss_pred EeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEE
Q 001989 285 VSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVV 353 (985)
Q Consensus 285 ~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v 353 (985)
.++. ++|++ +++++++|++++| |.+|.+.|+++|.++|+++|++ ++| +.+++|... +...+|+|+++
T Consensus 117 ~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D-~a~~~g~~~~~~~~~~~di~~ 194 (382)
T 4eb5_A 117 YIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HID-ATASVGQIEVDVEKIGADMLT 194 (382)
T ss_dssp EECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEE-CTTTBTTBCCCHHHHTCSEEE
T ss_pred EeccCCCCccCHHHHHHHhcCCCeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEE-cchhcCCcccCccccCCCEEE
Confidence 8764 45666 7788999988887 7899999999999999999999 885 345555332 22346899999
Q ss_pred ecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH
Q 001989 354 GSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 354 ~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~ 433 (985)
+|.+|+.+| +|+|+++++++. .+...+.|+ . +..+...+|.|. ....++.+++
T Consensus 195 ~s~sK~~g~-----~g~G~~~~~~~~--~l~~~~~~~------~-----------~~~~~~~~~~~~---~~~~~~~~al 247 (382)
T 4eb5_A 195 ISSNDIYGP-----KGVGALWIRKEA--KLQPVILGG------G-----------QENGLRSGSENV---PSIVGFGKAA 247 (382)
T ss_dssp EETGGGTCC-----SSCEEEEEETTC--CCCCSSCSS------C-----------TGGGTSCSCCCH---HHHHHHHHHH
T ss_pred eehHHhcCC-----CceEEEEEcccc--ccCceecCC------C-----------ccccccCCCccH---HHHHHHHHHH
Confidence 998334323 357889888763 222111110 0 011123345444 2333444443
Q ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC---CcceEEEecCC--HHHHHHHHHHcCceeeee------
Q 001989 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP---FFDTVKVKCAD--AHAIASAAYKIEMNLRVV------ 502 (985)
Q Consensus 434 ~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~---~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~------ 502 (985)
.++ .++++++.++..++++++.+.|+++.++++..++ ..+.+.+..++ ..++.+.|.++||.+...
T Consensus 248 --~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~ 324 (382)
T 4eb5_A 248 --EIT-AMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSK 324 (382)
T ss_dssp --HHH-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTSCHHHHHHHHHHHTCBCBCCCGGGTS
T ss_pred --HHH-HHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCCcCHHHHHHHHHHCCEEEeccccccCC
Confidence 222 3478899999999999999999998338887432 12345566554 788999999999987542
Q ss_pred -----------------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 -----------------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -----------------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+.+|++++..+|++|+++++++|.+
T Consensus 325 ~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 368 (382)
T 4eb5_A 325 TLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPG 368 (382)
T ss_dssp SCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 146899999999999999999999974
No 64
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.86 E-value=5.6e-21 Score=218.62 Aligned_cols=292 Identities=14% Similarity=0.080 Sum_probs=202.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhc--CCCeEEEEe
Q 001989 209 RLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRAD--GFDIKVVVS 286 (985)
Q Consensus 209 ~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~--~~gi~v~~v 286 (985)
..+.+.++++.+++++|.+ ..+.++.|||+++++++..+ . +||+||+++..|++... ..+++ +.+.+++.+
T Consensus 33 ~~~~~~~~~~~l~~~~~~~-~~v~~~~sgt~a~~~~~~~~--~--~gd~vi~~~~~~~~~~~--~~~~~~~g~~~~~~~~ 105 (379)
T 3ke3_A 33 FQEVMNDLLSNLKTVYNAE-AAVIIPGSGTYGMEAVARQL--T--IDEDCLIIRNGWFSYRW--TQILEKGKFAKSSTVL 105 (379)
T ss_dssp HHHHHHHHHHHHHHHHTCS-EEEEEESCHHHHHHHHHHHH--C--TTCEEEEEECSHHHHHH--HHHHHHHCCSSEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCC-CEEEEcCChhHHHHHHHHhC--C--CCCeEEEEeCCchhHHH--HHHHHHhCCCCceEEE
Confidence 3478888999999999988 45667789999888865332 3 88999999988876532 11222 223455444
Q ss_pred -----------------Cchhhhc-cC-CCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCC-C
Q 001989 287 -----------------DLKDIDY-KS-GDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL-K 342 (985)
Q Consensus 287 -----------------~~~~l~~-l~-~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l-~ 342 (985)
+++++++ +. +++++|++.++ |.+|.+.| +++|+++||++|+++++|. ..+ |.. .
T Consensus 106 ~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~-~~~-g~~~~ 183 (379)
T 3ke3_A 106 TAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDC-IAS-GCVWL 183 (379)
T ss_dssp ECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEEC-TTC-TTCCC
T ss_pred eccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEe-ccc-CCccc
Confidence 3345655 53 47888988875 78999999 9999999999999999953 345 533 2
Q ss_pred CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccc-------ccccc
Q 001989 343 PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQ-------HIRRD 414 (985)
Q Consensus 343 ~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~-------~irre 414 (985)
...++|+|++++++ |+|++ +||+|++++++++.+.+.+.. .+.|.+++....+ ..+..
T Consensus 184 ~~~~~~~d~~~~s~~K~l~~-----~~g~g~~~~~~~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~g~~~~ 249 (379)
T 3ke3_A 184 DMKELGIDVLISAPQKGWSS-----TPCAGLVMLSAAAIKKVESTE---------SNCFSLDLKQWLTIMRAYENGGHAY 249 (379)
T ss_dssp CHHHHTCSEEEECTTTTTCS-----CCCEEEEEECHHHHHHHHTCC---------CSCSTTCHHHHHHHHHHHHTTSCCC
T ss_pred cccccCCCEEEecchhhcCC-----CCceEEEEECHHHHHhhhcCC---------CCceeecHHHHHHHHHhhhccCCCC
Confidence 33568999999998 66753 357899999999887663210 1123332211111 11111
Q ss_pred ccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC--Ccce-EEEecCC-HHHHHH
Q 001989 415 KATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP--FFDT-VKVKCAD-AHAIAS 490 (985)
Q Consensus 415 ~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~--~~~~-~~~~~~~-~~~v~~ 490 (985)
.+|.|+ ..++++.+++ .++..+|++++.++..++++++++.|+++| ++++.++ .... +.+..++ .....+
T Consensus 250 ~~t~~~---~~~~a~~aal--~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g-~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 323 (379)
T 3ke3_A 250 HATMPT---DSLRQFRDAI--LEAKEIGFDILRDAQWELGNRVRKVLTDKG-IESVAAEGFEAPGVVVSYTERDDMHKGS 323 (379)
T ss_dssp SSCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBSBCTTCBCSSEEEEECSCHHHHSSH
T ss_pred CCCCCH---HHHHHHHHHH--HHHHHhcHHHHHHHHHHHHHHHHHHHHHcC-CEecCCccccCceEEEEccCCcchHHHH
Confidence 234443 4555666665 455567899999999999999999999997 8876432 2222 3344444 333367
Q ss_pred HHHHcCceeeeec---------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 491 AAYKIEMNLRVVD---------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 491 ~L~~~GI~~~~~~---------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.|.++||.+.... .+.+|+|++.++|++|||+++++|++
T Consensus 324 ~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~ 371 (379)
T 3ke3_A 324 AFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEK 371 (379)
T ss_dssp HHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHH
T ss_pred HHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHH
Confidence 8889999875431 57899999999999999999999974
No 65
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.86 E-value=3.7e-20 Score=213.17 Aligned_cols=330 Identities=11% Similarity=0.039 Sum_probs=224.1
Q ss_pred ecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcc-eeeccchHHHHHHHHHHh
Q 001989 170 FIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSN-ASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 170 ~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~-~sl~~~~ta~~ea~~~a~ 248 (985)
.++.| |..+|+.+.+++.. .- . ..|.++ ..+.+.++++.+++++|.+..+ +.+..|+|.++++++.++
T Consensus 16 ~~~pg--p~~~~~~v~~a~~~-~~-~---~~~~~~----~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~ 84 (411)
T 3nnk_A 16 LMGPG--PINADPRVLRAMSS-QL-I---GQYDPA----MTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSA 84 (411)
T ss_dssp EESSS--CCCCCHHHHHHHTS-CC-C---CTTCHH----HHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHH
T ss_pred eecCC--CCCCCHHHHHHhhc-cc-c---ccccHH----HHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHh
Confidence 34555 55678887655443 21 1 222222 2366788899999999998776 556677888888777655
Q ss_pred hhhcCCCCEEEEcCCCChh--HHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCC-CEeEEEEEcC-CCCeeeccH
Q 001989 249 NIQKGKKKTFIIASNCHPQ--TIDICITRADGFDIKVVVSDL--------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDY 315 (985)
Q Consensus 249 ~~~~~~g~~Vlv~~~~H~s--~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~-~t~~V~v~~p-n~~G~v~di 315 (985)
+ ++||+|+++...|++ +...+ +..|++++.++. ++|++ +++ ++++|++++| |++|.+.|+
T Consensus 85 -~--~~gd~Vl~~~~~~~~~~~~~~~----~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l 157 (411)
T 3nnk_A 85 -I--RPGDKVLVPVFGRFGHLLCEIA----RRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPL 157 (411)
T ss_dssp -C--CTTCEEEEEECSHHHHHHHHHH----HHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred -c--CCCCEEEEecCCchHHHHHHHH----HHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccH
Confidence 2 389999999999987 44443 346888888754 45555 654 8999999986 889999999
Q ss_pred HHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCc------e
Q 001989 316 GDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGR------I 387 (985)
Q Consensus 316 ~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~------~ 387 (985)
++|+++||++|+++++|. .++.+.. ....++|+|+++++. |+|++ ++++|++++++++.+.+... +
T Consensus 158 ~~i~~l~~~~~~~li~De-a~~~~~~~~~~~~~~~d~~~~s~~K~l~~-----~~g~g~~~~~~~~~~~~~~~~~~~~~~ 231 (411)
T 3nnk_A 158 AELGEICRRYDALFYTDA-TASLGGNPLETDVWGLDAVSAGMQKCLGG-----PSGTSPITLSARMEEAIRRRKCVEEGI 231 (411)
T ss_dssp TTHHHHHHHHTCEEEEEC-TTTBTTBCCCTTTTTCSEEECCSTTTTCC-----CSSEEEEEECHHHHHHHHTTCCCCGGG
T ss_pred HHHHHHHHHcCCEEEEEC-CcccCCcccchhccCCcEEEecCccccCC-----CCceEEEEECHHHHHHHhhcccccccc
Confidence 999999999999999953 4555544 344678999999998 66643 45689999999877654221 1
Q ss_pred eeeeec---CCCCcceeeecccc---cccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHH
Q 001989 388 VGVSID---SSGKPALRVAMQTR---EQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGL 461 (985)
Q Consensus 388 vG~t~d---~~g~~~~~l~l~tr---e~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L 461 (985)
.|.... ....+.+.+++... .+..+...+|.|+ ....++.+++ ..+..+|++++.++..++.+++.+.|
T Consensus 232 ~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~al--~~~~~~g~~~~~~~~~~~~~~l~~~L 306 (411)
T 3nnk_A 232 RTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEAT---TALFGARECA--RLILQEGLDYGIARHKLHGDALVKGI 306 (411)
T ss_dssp CCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCcccccchHHHHhhhccccCCCCCCCH---HHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 111000 00011122221100 0122334566665 3344444443 45556689999999999999999999
Q ss_pred hcCCCeEEcCCC---CcceEEEecC-C--HHHHHHHHHHc-Cceeeee----cCCeEEEEe-ccCCCHHHHHHHHHHHhC
Q 001989 462 KKLGTVEVQGLP---FFDTVKVKCA-D--AHAIASAAYKI-EMNLRVV----DSNTVTASF-DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 462 ~~~g~~~~~~~~---~~~~~~~~~~-~--~~~v~~~L~~~-GI~~~~~----~~~~lris~-t~~~t~edId~li~aL~~ 529 (985)
+++| +++..+. ....+.+..+ + ..++.+.|.++ ||.++.- .++.+|+++ ...+|++||++++++|++
T Consensus 307 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~ 385 (411)
T 3nnk_A 307 QAMG-LETFGDLKHKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEA 385 (411)
T ss_dssp HHTT-CCBCSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred HHcC-CEeCCCcccccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHH
Confidence 9987 8876432 1234556664 2 88999999876 9988642 357899998 667799999999999984
No 66
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.86 E-value=1.3e-19 Score=203.79 Aligned_cols=318 Identities=12% Similarity=0.024 Sum_probs=221.0
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhh
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI 250 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~ 250 (985)
+..|. ...|+.+.+++.+.-. ++ +. .+..+.+.++++.+|+++|.++.++.+++|+|.+++.++.++ .
T Consensus 5 ~~~~p--~~~~~~v~~a~~~~~~----~~-~~----~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~-~ 72 (352)
T 1iug_A 5 LTPGP--VRLHPKALEALARPQL----HH-RT----EAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNL-F 72 (352)
T ss_dssp CSSSS--CCCCHHHHHHHHSCCC----CT-TS----HHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHH-C
T ss_pred ccCCC--CCCCHHHHHHhccCCC----Cc-cC----HHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhc-c
Confidence 34553 3477777656554322 11 11 233466778999999999998778889999998888777665 2
Q ss_pred hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch-----hhhccC-CCEeEEEEEcC-CCCeeeccHHHHHHHHH
Q 001989 251 QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK-----DIDYKS-GDVCGVLVQYP-GTEGEVLDYGDFIKNAH 323 (985)
Q Consensus 251 ~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~-----~l~~l~-~~t~~V~v~~p-n~~G~v~di~~I~~~a~ 323 (985)
++||+|++++..|+++. +...++..|++++.++.+ +++++. +++++|++.+| |.+|.+.|+++|.++|+
T Consensus 73 --~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~ 148 (352)
T 1iug_A 73 --APGERVLVPVYGKFSER--FYEIALEAGLVVERLDYPYGDTPRPEDVAKEGYAGLLLVHSETSTGALADLPALARAFK 148 (352)
T ss_dssp --CTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCTTTSCCSSCSEEEEESEETTTTEECCHHHHHHHHH
T ss_pred --CCCCeEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCCCCCCHHHHhccCCcEEEEEEecCCcceecCHHHHHHHHH
Confidence 37899999999999976 222234468888887653 222222 57889999988 78999999999999999
Q ss_pred hC--CcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcc
Q 001989 324 AN--GVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPA 399 (985)
Q Consensus 324 ~~--galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~ 399 (985)
++ |+++++| +.+++|... ...++|+|+++++. |++++ ++|+|++++++++++.+.+ -+
T Consensus 149 ~~~~~~~li~D-~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~-----~~g~G~~~~~~~~~~~~~~--~~---------- 210 (352)
T 1iug_A 149 EKNPEGLVGAD-MVTSLLVGEVALEAMGVDAAASGSQKGLMC-----PPGLGFVALSPRALERLKP--RG---------- 210 (352)
T ss_dssp HHCTTCEEEEE-CTTTBTTBCCCSGGGTCSEEEEESSSTTCC-----CSCEEEEEECHHHHHTCCC--CS----------
T ss_pred hhCCCCEEEEE-CCccccCcceeccccCeeEEEecCcccccC-----CCceeEEEECHHHHHHhhC--CC----------
Confidence 99 9999995 344555432 23457899999998 65743 3468999999988877643 11
Q ss_pred eeeeccc--ccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC-Ccc
Q 001989 400 LRVAMQT--REQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-FFD 476 (985)
Q Consensus 400 ~~l~l~t--re~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~~ 476 (985)
+.+++.. ..+..++..+|.|. ....++.+++ ..+... ++++.++..++++++.+.|+++| +++..+. ...
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~al--~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~ 283 (352)
T 1iug_A 211 YYLDLARELKAQKEGESAWTPAI---NLVLAVAAVL--EEVLPR-LEEHLALKAWQNALLYGVGEEGG-LRPVPKRFSPA 283 (352)
T ss_dssp STTCHHHHHHHHTTTCCSSCCCH---HHHHHHHHHH--HHHGGG-HHHHHHHHHHHHHHHHHHHHHTT-CEESCSSBCTT
T ss_pred ceeeHHHHHhhcccCCCCCCCCH---HHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHCC-CcccccccCCe
Confidence 1111110 00111222344443 2333444443 444343 88899999999999999999986 8887432 233
Q ss_pred eEEEecC-C--HHHHHHHHHHcCceeeee----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 477 TVKVKCA-D--AHAIASAAYKIEMNLRVV----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 477 ~~~~~~~-~--~~~v~~~L~~~GI~~~~~----~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.+..+ + ..++.++|.++||.+... .++.+|++++..+|++|+++++++|..
T Consensus 284 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 343 (352)
T 1iug_A 284 VAAFYLPEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFRE 343 (352)
T ss_dssp CEEEECCTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHH
Confidence 4566665 3 788999999999988653 257899999999999999999999974
No 67
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.86 E-value=4.8e-21 Score=217.42 Aligned_cols=298 Identities=15% Similarity=0.158 Sum_probs=202.6
Q ss_pred HHHHHHH-HHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc--CC
Q 001989 634 FNNLGEW-LCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG--TD 710 (985)
Q Consensus 634 ~~e~~~~-la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~--~d 710 (985)
..+++++ +++++|.+ ..++.++|++|+..++.++. .++++|++++..|..+...++..|++++.+| ++
T Consensus 55 ~~~l~~~~la~~~~~~-~v~~~~g~t~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 125 (371)
T 2e7j_A 55 IHDFIHNQLPKFLGCD-VARVTNGAREAKFAVMHSLA--------KKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDY 125 (371)
T ss_dssp HHHHHHTHHHHHTTSS-EEEEESSHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCT
T ss_pred HHHHHHHHHHHHcCCC-EEEEeCChHHHHHHHHHHHh--------CCCCEEEEccCcchHHHHHHHHcCCeEEEeecccC
Confidence 5688899 99999988 44555666777755554431 3678999999888777777888999999999 88
Q ss_pred CCCCCCHHHHHHHHHhcC--CCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEE
Q 001989 711 AKGNINIEELRKAAEANR--DNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~~--~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~ 787 (985)
+++.+|+++|+++++++. +++++|++++| |++|.+. |+++|.++|+++|+++|+|+++..+...+ ....+++|++
T Consensus 126 ~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~-~~~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~di~ 203 (371)
T 2e7j_A 126 PDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLP-DVKKIAKVCSEYDVPLLVNGAYAIGRMPV-SLKEIGADFI 203 (371)
T ss_dssp TTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCC-CHHHHHHHHHTTTCCEEEECTTTBTTBCC-CHHHHTCSEE
T ss_pred CCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccC-CHHHHHHHHHHcCCeEEEECccccCCCCC-ChhhcCCCEE
Confidence 788999999999997432 47899999998 5799998 89999999999999999999986432221 2345678999
Q ss_pred EeCCcccccccCCCCCCceEEEEEcccccCc-CCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAPF-LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~-lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
++|+||+|+. ++++|++++++++.+. +.....+...+ ...+.++.+ ...+.++.+.+..+..
T Consensus 204 ~~s~sK~~~~-----~~~~G~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--------~~~~~a~~~~l~~~~~- 266 (371)
T 2e7j_A 204 VGSGHKSMAA-----SGPIGVMGMKEEWAEIVLRRSEKYKNKE---VELLGCTAR--------GATIITLMASFPHVRE- 266 (371)
T ss_dssp EEEHHHHSSC-----CSSCEEEEECTTTTTTTTCBCSSCTTSB---GGGTTCCCC--------SHHHHHHHHHHHHHHH-
T ss_pred EecCCcCCCC-----CCCcEEEEEechhhhhhccccccCcccc---cccccCCcC--------HHHHHHHHHHHHHHHH-
Confidence 9999999852 3478999999887665 53221110000 000011111 1112222233333322
Q ss_pred HHHHHHHHH--HHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCC--
Q 001989 867 GLTEASKIA--ILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPV-- 941 (985)
Q Consensus 867 Gl~~~~~~~--~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~-- 941 (985)
+..++. .++++++.+.|++ ++.+. .+.....+.+.+.++ +..++.+.|.++||.+....+..
T Consensus 267 ---~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~~~~~~~~~~~~--------~~~~~~~~l~~~gi~~~~~~~~~~~ 333 (371)
T 2e7j_A 267 ---RIKRWDEEVEKARRFAAEMEKLGIKQL--GDNPHNHDLMFFHAE--------VLYEISKKAKGGRFFLYRELKSRKI 333 (371)
T ss_dssp ---HGGGHHHHHHHHHHHHHHHHHTTCEEE--SSSSCCSSEEEEECH--------HHHHHHHHSSSGGGHHHHHHHHTTE
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHcCcEEe--cCCCccCceEEEECC--------CHHHHHHHHHHCCEEEEeccccccc
Confidence 334456 6788899999986 44432 221001122344432 46789999998899864311111
Q ss_pred ----CCEEE-EeccCC-CCHHHHHHHHccCChhHHHHhh
Q 001989 942 ----PGTLM-IEPTES-ESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 942 ----~~~lr-is~t~~-~t~eeId~~~~~~~l~~~~~~~ 974 (985)
++.+| ++++.. +|++|+++ +++.|+++++++
T Consensus 334 ~g~~~~~iRii~~~~~~~~~~~i~~--~~~~l~~~~~~~ 370 (371)
T 2e7j_A 334 HGIKPGLTRYFKLSTYGLSDEEVDY--VLNAFKEIIEKY 370 (371)
T ss_dssp ECSCTTCCSEEEEECTTCCHHHHHH--HHHHHHHHHHHC
T ss_pred cCCCCCceEEEEeeccCCCHHHHHH--HHHHHHHHHHhc
Confidence 47899 999988 99999999 788888887654
No 68
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.86 E-value=7.5e-21 Score=232.98 Aligned_cols=330 Identities=12% Similarity=0.047 Sum_probs=224.0
Q ss_pred ceecCCCCCCCCCcHHHHHHHHhC-C---cccccc--CCChhhHhh-----hHH----HHHHHHHHHHHHhcCCCCccee
Q 001989 168 KSFIGMGYYNTHVPPVILRNIMEN-P---AWYTQY--TPYQAEIAQ-----GRL----ESLLNFQTMIADLTGLPMSNAS 232 (985)
Q Consensus 168 ~~~lG~g~y~~~~p~~v~~~i~~~-~---~~~t~~--~pyq~e~sq-----g~l----~~i~e~q~~ia~L~g~~~~~~s 232 (985)
..|.+.|.|++++|......-+.. | +|++.| ++|++++++ |.+ +.+.++|+.+|+++|++.+ +.
T Consensus 115 ~~~~~~~~~~~~~Pgh~~g~~~~~~p~g~~~~~~~g~~~~~~di~~~~~~l~~l~~~~~~i~e~e~~lA~~~gae~~-i~ 193 (730)
T 1c4k_A 115 KEYVSRYLIQFDCPGHQGGQYYRKHPAGREFYDFFGETVFRADLCNADVALGDLLIHEGPAVAAEKHAARVYNADKT-YF 193 (730)
T ss_dssp HHHHTSCCCCCSSSTTTTTTTGGGSHHHHHHHHHHCSHHHHSCCCTTSGGGCBTTTTBTHHHHHHHHHHHHTTCSEE-EE
T ss_pred HHHHhcCCcccccCccccccccCCcchhhHHHhhcchhhhhHHhhhhhccCCCccCChHHHHHHHHHHHHHHCCCcE-EE
Confidence 457788888888876442100000 0 455555 677877777 555 6889999999999999864 55
Q ss_pred eccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe-------------Cchhh-----hc-
Q 001989 233 LLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS-------------DLKDI-----DY- 293 (985)
Q Consensus 233 l~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v-------------~~~~l-----~~- 293 (985)
+++|+|+++.++++++. ++||+||+++.+|+++...+ ++..|++++++ |+++| ++
T Consensus 194 v~nGtt~an~~ai~al~---~pGD~VLv~~~~H~S~~~~~---~~l~Ga~~v~v~~~~~~~~i~g~id~e~L~~~~le~~ 267 (730)
T 1c4k_A 194 VLGGSSNANNTVTSALV---SNGDLVLFDRNNHKSVYNSA---LAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIREL 267 (730)
T ss_dssp ESSHHHHHHHHHHHHHC---CTTCEEEEETTCCHHHHHHH---TTTTCCEEEEECEEECTTCCEEEECGGGSCHHHHHHH
T ss_pred ECCHHHHHHHHHHHHhc---CCCCEEEEcCCchHHHHHHH---HHHCCCEEEEEeCCccccCccCCCCHHHHhhhHHHHH
Confidence 66777788888777752 38999999999999999872 23467777654 44566 66
Q ss_pred cCCC------E----eEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccC-CC------CCC---cccce---
Q 001989 294 KSGD------V----CGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTI-LK------PPG---ELGAD--- 350 (985)
Q Consensus 294 l~~~------t----~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~-l~------~~~---~~GaD--- 350 (985)
+.++ + ++|++++||++|.+.|+++|+++||++|++++||. .++.++ +. .+. ++|+|
T Consensus 268 i~~~~~~~~~t~~~vklviv~~pn~~G~v~dl~~I~~la~~~g~~livDe-Ah~~~~~f~~~~~g~~~l~~~~~g~D~~~ 346 (730)
T 1c4k_A 268 AAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDS-AWVGYEQFIPMMRNSSPLLIDDLGPEDPG 346 (730)
T ss_dssp TTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEEC-TTCCGGGSSGGGGGGCTTSCCCCCTTSCE
T ss_pred hhcCCcccccccCCCeEEEEECCCCCCeecCHHHHHHHHHHcCCeEEEEc-ccccccccCcccCCcCcccccccCCCCCC
Confidence 6654 5 89999999999999999999999999999999952 333211 10 122 45998
Q ss_pred -EEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHH
Q 001989 351 -IVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLA 428 (985)
Q Consensus 351 -i~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a 428 (985)
++++|+ |+|++|. ++|+++++++.+.. +..++ + . .. + +........+++++ ..+.+
T Consensus 347 ~iv~~S~hK~L~g~~-----~gg~I~v~~~~l~g-~~~~i----~----~-~~--~--~~~~~~~~stsp~~---~~iaa 404 (730)
T 1c4k_A 347 IIVVQSVHKQQAGFS-----QTSQIHKKDSHIKG-QLRYC----D----H-KH--F--NNSFNLFMSTSPFY---PMYAA 404 (730)
T ss_dssp EEEEECHHHHSSCCT-----TCEEEEEECGGGTT-STTCC----C----H-HH--H--HHHHHHHSCSSCCH---HHHHH
T ss_pred EEEEECCCCCCCCCC-----CEEEEEecchhhcC-ccccc----C----H-HH--H--HHHHHHhCCCCCcH---HHHHH
Confidence 999998 7665432 35789888765421 00110 0 0 00 0 00001122233332 33444
Q ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc-CCCeEEcCCCC---------------------------------
Q 001989 429 NMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQGLPF--------------------------------- 474 (985)
Q Consensus 429 ~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~~~~~--------------------------------- 474 (985)
+.+++ .++..++.++..++..+++++++++|++ +.|++++.+..
T Consensus 405 l~aA~--~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 482 (730)
T 1c4k_A 405 LDVNA--AMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYE 482 (730)
T ss_dssp HHHHH--HHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCT
T ss_pred HHHHH--HHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccchhcccc
Confidence 44443 4444433466778899999999999998 53388763210
Q ss_pred --------cce--EEEecC------------C--HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 475 --------FDT--VKVKCA------------D--AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 475 --------~~~--~~~~~~------------~--~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++ ++|..+ + +.++.+.|.++||.++......+|+++|..+|++|+++|+++|.+
T Consensus 483 ~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~~~~~ir~~~s~g~t~e~i~~Ll~aL~~ 561 (730)
T 1c4k_A 483 GYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQ 561 (730)
T ss_dssp TCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred ccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 111 566663 2 789999999999999887778999999999999999999999974
No 69
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.86 E-value=2e-19 Score=205.14 Aligned_cols=336 Identities=16% Similarity=0.133 Sum_probs=229.4
Q ss_pred HHHHHHHHHHHhcCCCccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCC-C
Q 001989 150 ESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLP-M 228 (985)
Q Consensus 150 e~e~~~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~-~ 228 (985)
..++++++..+. +..|.++ .+ +..+|+.+.+++.+.. . +.|.+. ..+...++++.+++++|.+ .
T Consensus 7 ~~~~r~~f~~~~--~~~~l~~--~~--~~~~~~~v~~a~~~~~---~--~~~~~~----~~~~~~~~~~~la~~~g~~~~ 71 (386)
T 2dr1_A 7 EEAFKEVYEMVK--PKYKLFT--AG--PVACFPEVLEIMKVQM---F--SHRSKE----YRKVHMDTVERLREFLEVEKG 71 (386)
T ss_dssp HHHHHHHHHHHS--CCSEECC--SS--SCCCCHHHHHHTTSCC---C--CTTSHH----HHHHHHHHHHHHHHHHTCSSS
T ss_pred hHHHHHHHhhcC--ccceeec--CC--CcCCcHHHHHHHhccc---c--cccCHH----HHHHHHHHHHHHHHHhCCCCC
Confidence 356788886443 3334333 23 2346666765544321 1 123222 2566778889999999998 5
Q ss_pred cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChh--HHHHHHHhhcCCCeEEEEeCc--------hhhhc-c--C
Q 001989 229 SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQ--TIDICITRADGFDIKVVVSDL--------KDIDY-K--S 295 (985)
Q Consensus 229 ~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s--~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l--~ 295 (985)
.++.+++|+|.+++.++.++ . ++||+|++++..|++ +...++ ..|++++.++. ++|++ + +
T Consensus 72 ~~v~~~~g~t~a~~~~~~~l-~--~~gd~vl~~~~~~~~~~~~~~~~----~~g~~~~~v~~~~~~~~d~~~l~~~l~~~ 144 (386)
T 2dr1_A 72 EVLLVPSSGTGIMEASIRNG-V--SKGGKVLVTIIGAFGKRYKEVVE----SNGRKAVVLEYEPGKAVKPEDLDDALRKN 144 (386)
T ss_dssp EEEEESSCHHHHHHHHHHHH-S--CTTCEEEEEESSHHHHHHHHHHH----HTTCEEEEEECCTTCCCCHHHHHHHHHHC
T ss_pred cEEEEeCChHHHHHHHHHHh-h--cCCCeEEEEcCCchhHHHHHHHH----HhCCceEEEecCCCCCCCHHHHHHHHhcC
Confidence 56888999998888777664 2 378999999999988 555443 45778777653 45666 6 5
Q ss_pred CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEEecC-ccccccCCCCCCcEEE
Q 001989 296 GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSA-QRFGVPMGYGGPHAAF 372 (985)
Q Consensus 296 ~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~ 372 (985)
+++++|++++| |++|.+.|+++|.++|+++|+++++| +..+.+.. .+..++|+|++++|. |+|++| +|+|+
T Consensus 145 ~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~-----~g~G~ 218 (386)
T 2dr1_A 145 PDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVD-AVSAMGGADIKFDKWGLDVVFSSSQKAFGVP-----PGLAI 218 (386)
T ss_dssp TTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEE-CTTTBTTBCCCTTTTTCSEEEEETTSTTCCC-----SSCEE
T ss_pred CCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEE-ccccccCccccccccCCcEEEEeccccccCC-----CceEE
Confidence 78999999987 88999999999999999999999995 34555543 234678999999998 777643 24799
Q ss_pred EEEchhhHhcCCC-ceeeeeecCCCCcceeeeccc--cccc-ccccccCCCccchhHHHHHHHHHHHHHhCcc-hHHHHH
Q 001989 373 LATSQEYKRMMPG-RIVGVSIDSSGKPALRVAMQT--REQH-IRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIA 447 (985)
Q Consensus 373 l~~~~~~~~~lp~-~~vG~t~d~~g~~~~~l~l~t--re~~-irre~atsni~t~~~l~a~~aa~~l~~~g~~-Gl~~i~ 447 (985)
+++++++++.+.+ +..| +.+++.. +..+ .+...+|.|. ....++.+++ ..+... |++++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~l--~~~~~~g~~~~~~ 283 (386)
T 2dr1_A 219 GAFSERFLEIAEKMPERG----------WYFDIPLYVKYLKEKESTPSTPPM---PQVFGINVAL--RIIEKMGGKEKWL 283 (386)
T ss_dssp EEECHHHHHHHTTCTTCC----------STTCHHHHHHHHHHHSSCSSCCCH---HHHHHHHHHH--HHHHHTTCHHHHH
T ss_pred EEECHHHHHHHhcCCCCc----------eEEeHHHHHHhhccCCCCCCCCCH---HHHHHHHHHH--HHHHHhcCHHHHH
Confidence 9999988776632 1112 1122110 0000 1112222222 2233333333 444455 789999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEcCCC---CcceEEEecC-C--HHHHHHHHHHcCceeeee----cCCeEEEEeccCCCH
Q 001989 448 QRVHGLAGTFALGLKKLGTVEVQGLP---FFDTVKVKCA-D--AHAIASAAYKIEMNLRVV----DSNTVTASFDETTTL 517 (985)
Q Consensus 448 ~~~~~~a~~l~~~L~~~g~~~~~~~~---~~~~~~~~~~-~--~~~v~~~L~~~GI~~~~~----~~~~lris~t~~~t~ 517 (985)
++..++++++.+.|+++| +++..+. ....+.+..+ + ..++.++|.++||.+... ..+.+|++++.++|+
T Consensus 284 ~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~ 362 (386)
T 2dr1_A 284 EMYEKRAKMVREGVREIG-LDILAEPGHESPTITAVLTPPGIKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKF 362 (386)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCBSSCTTCBCSSEEEEECCTTCCHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCH
T ss_pred HHHHHHHHHHHHHHHHcC-CeeCcCccccCCceEEEEcCCCCCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCH
Confidence 999999999999999986 8776431 2334556665 2 888999999999988653 247899999999999
Q ss_pred HHHHHHHHHHhC
Q 001989 518 EDVDKLFIVFAG 529 (985)
Q Consensus 518 edId~li~aL~~ 529 (985)
+|+++++++|+.
T Consensus 363 ~~i~~~~~~l~~ 374 (386)
T 2dr1_A 363 EDIQEMLDNLRE 374 (386)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999974
No 70
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.86 E-value=1.4e-19 Score=204.66 Aligned_cols=364 Identities=13% Similarity=0.146 Sum_probs=234.4
Q ss_pred CCccccCCCCHHHHHHHHHHHhccccCcccccccccccccCCCccccccc---cccccc---------cccCCCCchhhh
Q 001989 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMP---VTWPSF---------ANIHPFAPADQA 627 (985)
Q Consensus 560 ~~p~~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~---~~~~~f---------~~~~p~~p~e~~ 627 (985)
.+| +.|++|.+|.-.+.+|+..|.. ++.+.| -+....-... +.+.+| .++.--|| ..
T Consensus 40 ~~P--~~g~~d~~ie~~l~~la~mdsn-----n~~~~~--g~GERE~Rv~s~lv~rrh~~~~HGiGRSGd~~~~QP--KA 108 (501)
T 3hl2_A 40 KCP--ENGWDESTLELFLHELAIMDSN-----NFLGNC--GVGEREGRVASALVARRHYRFIHGIGRSGDISAVQP--KA 108 (501)
T ss_dssp CCC--SSCCCHHHHHHHHHHHHTTBGG-----GCSSCC--CCSSCCCCCSCHHHHHHTTTCCSCBSCSSCTTCCCT--TB
T ss_pred CCC--ccCCCHHHHHHHHHHHHhhccC-----CCcccC--CcccchHHHHHHHHHhhccCcccCCCCccccccCCC--Cc
Confidence 357 6899999999999999999843 233322 1112111111 111121 12444455 23
Q ss_pred hhHHHHHHH----HHHHHHHHhCCCcc--ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCC
Q 001989 628 QGYQEMFNN----LGEWLCTITGFDSF--SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCG 701 (985)
Q Consensus 628 ~G~~~~~~e----~~~~la~l~G~~~~--~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G 701 (985)
.|..-+..- +..||+++ |++.. .|.+++++.+++++++++.. . +..++++||+|+.+|-+..+++.+.|
T Consensus 109 aGssll~~ltn~l~ld~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r---~-~rpg~d~VIvpRn~HKSv~kAliL~G 183 (501)
T 3hl2_A 109 AGSSLLNKITNSLVLDIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLR---H-KRPKAKYIIWPRIDQKSCFKSMITAG 183 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHH---H-HCTTCCEEEEECCCCHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcC---c-ccCCCCEEEEecchHHHHHHHHHHcC
Confidence 453322221 23455555 98874 45566666566666655432 1 11124899999999999999999999
Q ss_pred cEEEEEcC---CCCCCCCHHHHHHHHHhcC-CCEEEEEEEcCCCcc-ccccCHHHHHHHHHHcCCEEEEEccccccccCC
Q 001989 702 MKIVSVGT---DAKGNINIEELRKAAEANR-DNLSTLMVTYPSTHG-VYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL 776 (985)
Q Consensus 702 ~~vv~v~~---d~~g~iD~e~L~~~i~~~~-~~t~~Vvv~~pn~~G-~i~~di~eI~~la~~~galliVD~a~~~~~~~l 776 (985)
+++++|+. ++...+|+++|+++|+++. +...+|+.+.+++.| +.+ ||++|+++||++|++++||+||.. +..+
T Consensus 184 l~Pv~V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~d-dI~eIaeIch~~gIpllVDeAhGa-h~~~ 261 (501)
T 3hl2_A 184 FEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPD-RLEELAVICANYDIPHIVNNAYGV-QSSK 261 (501)
T ss_dssp CEEEEECEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCC-CHHHHHHHHHHHTCCEEEECTTCT-TCHH
T ss_pred CeEEEEeeeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccc-cHHHHHHHHHHcCCeEEEeCcchh-hhhh
Confidence 99999976 2347899999999999764 344444444444433 556 999999999999999999998842 2111
Q ss_pred C--CC---CccC-CcEEEeCCcccccccCCCCCCceEEEEEcc-cccCcC----CCCccccCCCCCCCCCCCCCCCCCCc
Q 001989 777 T--SP---GYIG-ADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFL----PSHPVVSTGGIPAPEKSQPLGTIAAA 845 (985)
Q Consensus 777 ~--~p---g~~g-~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~l----p~~~~g~~~~~~~~~~~~~~~~i~s~ 845 (985)
. .| ...| +|+++.|.||++..|.+ +|++++++ ++.+.+ ||+ .++
T Consensus 262 ~~~lp~sA~~~GrAD~vVqS~HK~llvpIG-----G~ii~~~d~e~l~~~~~~yPGr-------------------~S~- 316 (501)
T 3hl2_A 262 CMHLIQQGARVGRIDAFVQSLDKNFMVPVG-----GAIIAGFNDSFIQEISKMYPGR-------------------ASA- 316 (501)
T ss_dssp HHHHHHHHHHHSCCCEEEEEHHHHHCCCSS-----CEEEEESCHHHHHHHHHTSCSC-------------------BCS-
T ss_pred hhhhHHHHHhcCCCcEEEecccccceeecC-----ceEEEeCCHHHHHHHHHhCCCC-------------------CCC-
Confidence 1 01 2357 99999999999987754 24555553 333322 211 011
Q ss_pred chhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-----cCCeeecCCCCceeeEEEEEecCccccCCCCH
Q 001989 846 PWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-----HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEP 920 (985)
Q Consensus 846 ~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-----g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~ 920 (985)
......|+.+..+|.+||+++.++..++++||+++|++ +-+++ ..+..+. .+.+.+..+....+...
T Consensus 317 -----Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll-~~~~n~i--s~a~tl~~~~~~~~~~~ 388 (501)
T 3hl2_A 317 -----SPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLL-HTPHNPI--SLAMTLKTLDEHRDKAV 388 (501)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBC-CCTTCSS--EEEEECTTSCTTTSCHH
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhc-CCCCCce--eEEEecccccccccccH
Confidence 12345689999999999999999999999999999986 22333 2222232 34556543322222346
Q ss_pred HHHHHHHHHCCCccCC-----C----------C-------CCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccC
Q 001989 921 EDVAKRLMDYGFHGPT-----M----------S-------WPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 921 ~~v~~~L~~~Gi~~~~-----~----------~-------~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~ 977 (985)
..+-..|..+++-... - . +| -..+-++...-.+++|||. |++.|++++.++++.
T Consensus 389 t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~-~~yl~~a~aiG~~~~~v~~--~~~~l~~~~~~~~~~ 464 (501)
T 3hl2_A 389 TQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYP-CAYLNAASAIGMKMQDVDL--FIKRLDRCLKAVRKE 464 (501)
T ss_dssp HHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCS-SCEEEEECCTTCCHHHHHH--HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCCC-chHHHHHHHcCCCHHHHHH--HHHHHHHHHHHHHHh
Confidence 6788889888764221 0 1 12 2678888889999999999 889999999888764
No 71
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.86 E-value=3.4e-19 Score=206.23 Aligned_cols=293 Identities=16% Similarity=0.131 Sum_probs=212.3
Q ss_pred HhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhh-hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001989 205 IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI-QKGKKKTFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 205 ~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~-~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v 283 (985)
...+..+.+.++++.+++++|.++.++.+++|+|.++++++.++.- ..++||+|+++...|+++...+..+ +..|+++
T Consensus 62 ~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-~~~g~~~ 140 (423)
T 3lvm_A 62 FGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQL-EREGFEV 140 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHH-HHTTCEE
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHH-HHcCCEE
Confidence 4556678888999999999999988999999999888887765431 1236899999999999998887654 4568888
Q ss_pred EEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEE
Q 001989 284 VVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIV 352 (985)
Q Consensus 284 ~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~ 352 (985)
+.++. ++|++ +++++++|++.+| |++|.+.|+++|.++|+++|+++++| +..+.+.. .....+|+|++
T Consensus 141 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-ea~~~~~~~~~~~~~~~di~ 219 (423)
T 3lvm_A 141 TYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVD-ATQSVGKLPIDLSQLKVDLM 219 (423)
T ss_dssp EEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEE-CTTTTTTSCCCTTTSCCSEE
T ss_pred EEeccCCCCccCHHHHHHhcCCCcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEE-hhhhcCCCCcChhhcCCCEE
Confidence 88764 45666 7889999999887 78999999999999999999999995 34555544 33467899999
Q ss_pred EecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 353 VGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 353 v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
+++.+|+. |++|+|+++++++....+.....|.. +..++..+|.|. ....++.++
T Consensus 220 ~~s~sK~~-----g~~g~G~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~---~~~~a~~~a 274 (423)
T 3lvm_A 220 SFSGHKIY-----GPKGIGALYVRRKPRVRIEAQMHGGG-----------------HERGMRSGTLPV---HQIVGMGEA 274 (423)
T ss_dssp EEESTTTT-----SCSSCEEEEECBTTBCCCCCSSCSSC-----------------TTTTTCCSCCCH---HHHHHHHHH
T ss_pred EechHHhc-----CCCCeEEEEEeccccCCCCccccCCc-----------------ccccccCCCCCH---HHHHHHHHH
Confidence 99983342 34458999999877666543332210 001122344443 334444444
Q ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCC---cceEEEecCC--HHHHHHHHHHcCceeeee-----
Q 001989 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPF---FDTVKVKCAD--AHAIASAAYKIEMNLRVV----- 502 (985)
Q Consensus 433 ~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~---~~~~~~~~~~--~~~v~~~L~~~GI~~~~~----- 502 (985)
+ .++ .+.++++.++..++.+++++.|+++.++++...+. ...+.|..++ ..++.+.|.+ |.+..-
T Consensus 275 l--~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--i~v~~g~~~~~ 349 (423)
T 3lvm_A 275 Y--RIA-KEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKD--LAVSSGSACTS 349 (423)
T ss_dssp H--HHH-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTBCTTEEEEEETTSCHHHHHHHTTT--EECBCCCC---
T ss_pred H--HHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEeCCCCHHHHHHHHhh--heeccCccccC
Confidence 3 222 22378899999999999999999983388874321 2345555554 7888888876 544321
Q ss_pred ------------------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 ------------------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ------------------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+.+|++++..+|++||++++++|.+
T Consensus 350 ~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~ 394 (423)
T 3lvm_A 350 ASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRK 394 (423)
T ss_dssp --CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 037899999999999999999999985
No 72
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.86 E-value=9.2e-20 Score=207.41 Aligned_cols=324 Identities=14% Similarity=0.072 Sum_probs=219.4
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCc-ceee-ccchHHHHHHHHHHh
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMS-NASL-LDEGTAAAEAMAMCN 248 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~-~~sl-~~~~ta~~ea~~~a~ 248 (985)
++.| |..+|+.+.+++.+.. .. .+.+ +..+...++++.+++++|.+.. +..+ ++|||.++++++.++
T Consensus 23 ~~pg--p~~~~~~v~~a~~~~~--~~---~~~~----~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~ 91 (376)
T 3f0h_A 23 FTVG--PVMSSEEVRAIGAEQV--PY---FRTT----EFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNC 91 (376)
T ss_dssp CSSS--SCCCCHHHHHHHTSCC--CC---CSSH----HHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHH
T ss_pred ecCC--CCCCcHHHHHHhcCCC--CC---CCCH----HHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhc
Confidence 3555 4568888875554321 11 1222 2346677889999999999753 4444 678898888776654
Q ss_pred hhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHH
Q 001989 249 NIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDF 318 (985)
Q Consensus 249 ~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I 318 (985)
. ++||+||++...+.+.... ..+...|++++.++. +++++ +++++++|++++| |.+|.+.|+++|
T Consensus 92 ~---~~gd~vi~~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i 166 (376)
T 3f0h_A 92 F---TKKDKVLVIDGGSFGHRFV--QLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTMMI 166 (376)
T ss_dssp C---CTTCCEEEEESSHHHHHHH--HHHHHTTCCEEEEECCTTCCCCHHHHHTTTTSCCCEEEEESEETTTTEECCHHHH
T ss_pred c---CCCCeEEEEeCChhhHHHH--HHHHHcCCceEEEeCCCCCCCCHHHHHHhhccCceEEEEecccCCcceecCHHHH
Confidence 2 3889999888655443211 223345777766543 45666 7788999999987 889999999999
Q ss_pred HHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCC
Q 001989 319 IKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSG 396 (985)
Q Consensus 319 ~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g 396 (985)
+++|+++|+++++|. ..+.+... ...++|+|++++++ |+|++ +||+|++++++++.+.+.....
T Consensus 167 ~~l~~~~~~~li~D~-~~~~~~~~~~~~~~~~d~~~~s~~K~l~~-----~~G~g~~~~~~~~~~~~~~~~~-------- 232 (376)
T 3f0h_A 167 GEFCKKNNMFFVCDC-VSAFLADPFNMNECGADVMITGSQKVLAC-----PPGISVIVLAPRGVERVEKSKV-------- 232 (376)
T ss_dssp HHHHHHTTCEEEEEC-TTTTTTSCCCHHHHTCSEEEEETTTTTCC-----CSSCEEEEECHHHHHHHHTCCC--------
T ss_pred HHHHHHcCCEEEEEc-CccccCccccccccCccEEEecCcccccC-----CCceEEEEECHHHHHHhhcCCC--------
Confidence 999999999999953 44554332 23467899999998 77753 4668999999988776532111
Q ss_pred CcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC-C
Q 001989 397 KPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-F 474 (985)
Q Consensus 397 ~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-~ 474 (985)
.++.++.....+.. ...+|.+.++.....++.+++ .++..+ |++++.++..++++++++.|+++| +++.... .
T Consensus 233 -~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~al--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~ 307 (376)
T 3f0h_A 233 -RTMYFDLKDALKNQ-ERGQTPFTPAVGILLQINERL--KEIKKHGGADAEVARIASQAADFRAKIKDLP-FELVSESPA 307 (376)
T ss_dssp -CCSTTCHHHHHHHH-TTTCCSSCCCHHHHHHHHHHH--HHHHHTTHHHHHHHHHHHHHHHHHHHTTTSS-EEECCSSBB
T ss_pred -CceeecHHHHHhhc-ccCCCCCCCcHHHHHHHHHHH--HHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC-CccCccccC
Confidence 11212211111111 123455554444445555554 444455 789999999999999999999997 8887432 2
Q ss_pred cceEEEecCC--HHHHHHHHHHc-Cceeeee----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 475 FDTVKVKCAD--AHAIASAAYKI-EMNLRVV----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 475 ~~~~~~~~~~--~~~v~~~L~~~-GI~~~~~----~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
...+.+..++ ..++.+.|.++ ||.++.. .++.+|++++..+|++|+|+++++|++
T Consensus 308 ~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~ 369 (376)
T 3f0h_A 308 NGVTSVHPTTANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKD 369 (376)
T ss_dssp TTEEEEEESSSCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 2234444333 88999999998 9988542 357899999999999999999999974
No 73
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.85 E-value=2.3e-20 Score=212.74 Aligned_cols=316 Identities=11% Similarity=0.036 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHHhCCC----c-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCC-C-CcccHHHHHHCCcEE
Q 001989 632 EMFNNLGEWLCTITGFD----S-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVS-A-HGTNPATAAMCGMKI 704 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~----~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~-~-Hg~~~~~a~~~G~~v 704 (985)
....+++++++++++.. . ..++.++|++|+..++.++. +...++++||+++. . |......++..|+++
T Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~-----~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~ 112 (385)
T 2bkw_A 38 SIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFI-----LSKAPNKNVLVVSTGTFSDRFADCLRSYGAQV 112 (385)
T ss_dssp HHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHS-----CTTCSCCEEEEECSSHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHh-----ccCCCCCeEEEEcCCcchHHHHHHHHHcCCce
Confidence 34556778888888764 2 23556777877755554431 00136788877643 2 222224456789999
Q ss_pred EEEcC-CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHc--CCEEEEEccccccccCCCCCC
Q 001989 705 VSVGT-DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDN--GGQVYMDGANMNAQVGLTSPG 780 (985)
Q Consensus 705 v~v~~-d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~--galliVD~a~~~~~~~l~~pg 780 (985)
+.+|+ ++++.+|+++|++++++ +++++|++++| |++|.+. |+++|.++|+++ |+++|+|++|..+...+ ...
T Consensus 113 ~~v~~~~~~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~-~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~-~~~ 188 (385)
T 2bkw_A 113 DVVRPLKIGESVPLELITEKLSQ--NSYGAVTVTHVDTSTAVLS-DLKAISQAIKQTSPETFFVVDAVCSIGCEEF-EFD 188 (385)
T ss_dssp EEECCSSTTSCCCHHHHHHHHHH--SCCSEEEEESEETTTTEEC-CHHHHHHHHHHHCTTSEEEEECTTTTTTSCC-CTT
T ss_pred EEEecCCCCCCCCHHHHHHHHhc--CCCCEEEEEccCCCcCeEc-CHHHHHHHHHhhCCCCEEEEECccccCCccc-ccc
Confidence 99999 88899999999999982 27889999998 5799998 899999999999 99999999986432222 234
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccC-cC------CCCccccCCCCCC---CCCCCCCCC-CCCcchhh
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP-FL------PSHPVVSTGGIPA---PEKSQPLGT-IAAAPWGS 849 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~-~l------p~~~~g~~~~~~~---~~~~~~~~~-i~s~~~g~ 849 (985)
.+++|++++|+||+++ |++|+|++++++++.. .+ +...++....... +....+.+. ..+. +
T Consensus 189 ~~~~d~~~~s~~K~~~-----~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 260 (385)
T 2bkw_A 189 EWGVDFALTASQKAIG-----APAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATP---P 260 (385)
T ss_dssp TTTCSEEEEESSSTTC-----CCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCC---C
T ss_pred ccCceEEEecCccccc-----cCCcceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCC---C
Confidence 5689999999999884 3468899999876554 33 1111110000000 000000000 0000 1
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-hc-cCCeeecCCCC-ceeeEEEEEecCccccCCCCHHHHHHH
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRL-EK-HYPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L-~~-g~~l~~~~~~~-~~~~~~iv~~~~~~~~~g~~~~~v~~~ 926 (985)
...+.++.+.+..+...|+.+..++..++++++.+.| ++ ++.+..+.+.. ...+.+.+.++ + ..++.++
T Consensus 261 ~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~ 332 (385)
T 2bkw_A 261 VQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAVYVA------D--PPDVIAF 332 (385)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEEECS------C--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhcCceecccCcccccCCceEEEecC------C--HHHHHHH
Confidence 1222223344555555567777788889999999999 76 33332111100 11223445543 2 7789999
Q ss_pred HHHCCCccCCCCC-C-CCCEEEEe-cc---CCCCHHHHHHHHccCChhHHHHhh
Q 001989 927 LMDYGFHGPTMSW-P-VPGTLMIE-PT---ESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 927 L~~~Gi~~~~~~~-p-~~~~lris-~t---~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
|.++||.+..... + ..+.+||+ +. ..+|++|+++ +++.|+++++++
T Consensus 333 l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~--~~~~l~~~~~~~ 384 (385)
T 2bkw_A 333 LKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKN--CFDLIKLALQRK 384 (385)
T ss_dssp HHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHH--HHHHHHHHTTC-
T ss_pred HHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHH--HHHHHHHHHHhc
Confidence 9999998754321 1 24789999 54 2579999999 778888876543
No 74
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.85 E-value=4.2e-19 Score=202.09 Aligned_cols=289 Identities=15% Similarity=0.124 Sum_probs=206.0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhh-cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001989 207 QGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ-KGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~-~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~ 285 (985)
.+..+.+.++++.+|+++|.++.++.+++|+|.++++++.++... .++||+|+++...|+++...+... +..|++++.
T Consensus 40 ~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-~~~g~~~~~ 118 (384)
T 1eg5_A 40 IEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYL-SMKGFKVKY 118 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHH-HHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHHHH-HhcCCEEEE
Confidence 344567788999999999998888999999999888877665420 137899999999999998877532 345888888
Q ss_pred eCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCC--cEEEEEecCccccCCC-CCCcccceEE
Q 001989 286 SDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANG--VKVVMATDLLALTILK-PPGELGADIV 352 (985)
Q Consensus 286 v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~g--alliV~a~~~~lg~l~-~~~~~GaDi~ 352 (985)
++. ++|++ +++++++|++++| |.+|.+.|+++|.++|+++| +++++| +..++|... +..++++|++
T Consensus 119 v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~D-ea~~~~~~~~~~~~~~~di~ 197 (384)
T 1eg5_A 119 VPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVD-AVQTIGKIPFSLEKLEVDYA 197 (384)
T ss_dssp CCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEE-CTTTTTTSCCCCTTTCCSEE
T ss_pred EccCCCCccCHHHHHHHhCCCCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEE-hhhhcCCcccCchhcCCCEE
Confidence 764 45666 7788999999988 68999999999999999999 999995 344554332 2345789999
Q ss_pred EecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHH
Q 001989 353 VGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMA 431 (985)
Q Consensus 353 v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~a 431 (985)
++|. |.++ .||+|++++++++ .+...+.++ + +..+...++.|. ....++.+
T Consensus 198 ~~s~sK~~g------~~G~G~~~~~~~~--~~~~~~~~~-----~------------~~~~~~~~~~~~---~~~~a~~~ 249 (384)
T 1eg5_A 198 SFSAHKFHG------PKGVGITYIRKGV--PIRPLIHGG-----G------------QERGLRSGTQNV---PGIVGAAR 249 (384)
T ss_dssp EEEGGGGTS------CTTCEEEEECTTS--CCCCSBCSS-----C------------TTTTTBCSCCCH---HHHHHHHH
T ss_pred EecHHHhcC------CCceEEEEEcCCC--ccccccccC-----c------------ccccccCCCCCh---HHHHHHHH
Confidence 9998 6432 2347999998765 121111110 0 000112233332 22333333
Q ss_pred HHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC---CcceEEEecCC--HHHHHHHHHHcCceeeee---c
Q 001989 432 AMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP---FFDTVKVKCAD--AHAIASAAYKIEMNLRVV---D 503 (985)
Q Consensus 432 a~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~---~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~---~ 503 (985)
++ ... .++++++.++..++++++.+.|++.| +++..++ ....+.|..++ ..++.+.|.++||.+... .
T Consensus 250 al--~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~ 325 (384)
T 1eg5_A 250 AM--EIA-VEELSEAAKHMEKLRSKLVSGLMNLG-AHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACT 325 (384)
T ss_dssp HH--HHH-HHTHHHHHHHHHHHHHHHHHHHHTTT-CEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECBC-----
T ss_pred HH--HHH-HHhHHHHHHHHHHHHHHHHHHhCCCC-eEEeCCcccCCCCEEEEEeCCCCHHHHHHHHhhCCeEEecccccc
Confidence 33 222 34688899999999999999999876 8886432 22345555554 788999999999987541 0
Q ss_pred --------------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 504 --------------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 --------------------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.+|++++.++|++|+++++++|..
T Consensus 326 ~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 371 (384)
T 1eg5_A 326 SKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEE 371 (384)
T ss_dssp -------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 26899999999999999999999974
No 75
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.85 E-value=5.7e-20 Score=208.31 Aligned_cols=284 Identities=12% Similarity=0.078 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 634 FNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
..++++++++++|.+... ++.++|++++..++.++. .++++|+++...|..+...++..|++++.+|.+++
T Consensus 69 ~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 140 (363)
T 3ffh_A 69 ASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLL--------DTTTNTVMATPTFVQYRQNALIEGAEVREIPLLQD 140 (363)
T ss_dssp CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC--------STTCEEEEEESSCHHHHHHHHHHTCEEEEEECCTT
T ss_pred hHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHHc--------cCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCCC
Confidence 357889999999987654 455666766654444331 36789999888776666677888999999999888
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHc--CCEEEEEccccccc-cCCCC----CCccCC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDN--GGQVYMDGANMNAQ-VGLTS----PGYIGA 784 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~--galliVD~a~~~~~-~~l~~----pg~~g~ 784 (985)
+.+|+++|+++++ +++++|++++|+ ++|.+. |+++|.++++.+ |+++++|++|.... +.... ....+.
T Consensus 141 ~~~d~~~l~~~i~---~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 216 (363)
T 3ffh_A 141 GEHDLEGMLNAID---EKTTIVWICNPNNPTGNYI-ELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKN 216 (363)
T ss_dssp SCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCTT
T ss_pred CCcCHHHHHHhcc---cCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCCC
Confidence 9999999999997 789999999994 699998 899999999888 99999999985211 11101 112234
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
++++.+++|+|+. +|.++|++++++++.+.+.... .+.+. +.....++.+.+. .
T Consensus 217 ~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~l~~~~--------------~~~~~------~~~~~~~~~~~l~--~ 270 (363)
T 3ffh_A 217 LIITRTFSKIYGL----ASARVGYGIADKEIIRQLNIVR--------------PPFNT------TSIGQKLAIEAIK--D 270 (363)
T ss_dssp EEEEEESSSTTCC----SSCCCEEEEECHHHHHHHHHTC--------------CSCCC------BHHHHHHHHHHHH--C
T ss_pred EEEEeechhhhcC----chhceeeeecCHHHHHHHHHhC--------------CCCCC------CHHHHHHHHHHhc--C
Confidence 5778888898853 3567799999887765442110 01111 1222233334443 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-CCCCCC
Q 001989 865 SKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-SWPVPG 943 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~p~~~ 943 (985)
.+.+.+..++..++++++.+.|++..++...++.+. + +.+.++ .+..++.++|.++||.+... .+..++
T Consensus 271 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~-~--~~~~~~-------~~~~~~~~~l~~~gi~v~~g~~~~~~~ 340 (363)
T 3ffh_A 271 QAFIGECRTSNANGIKQYEAFAKRFEKVKLYPANGN-F--VLIDLG-------IEAGTIFSYLEKNGYITRSGAALGFPT 340 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCSS-E--EEEECS-------SCHHHHHHHHHHTTEECEETTTTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCceECCCCCe-E--EEEECC-------CCHHHHHHHHHHCCeEEEeCccCCCCC
Confidence 356677777888899999999986333322222222 2 345554 26889999999999987542 233368
Q ss_pred EEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 944 TLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 944 ~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
.+||+++ |++|+|+ +++.|+++
T Consensus 341 ~iRis~~---~~~~i~~--~~~~l~~~ 362 (363)
T 3ffh_A 341 AVRITIG---KEEDNSA--VIALLEKL 362 (363)
T ss_dssp EEEEECC---CHHHHHH--HHHHHHHH
T ss_pred eEEEECC---CHHHHHH--HHHHHHHh
Confidence 9999986 9999999 66777654
No 76
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.85 E-value=3.4e-20 Score=215.60 Aligned_cols=300 Identities=12% Similarity=0.039 Sum_probs=208.4
Q ss_pred hHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 629 GYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
|..+...++++.+++++|.+. .+++++|+++++.++.+ +. .++++|+++...|+++...++..|.+++.+|
T Consensus 106 G~~~~~~~l~~~la~~~g~~~-~i~~~sGs~a~~~al~~---l~-----~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~ 176 (427)
T 2w8t_A 106 GTFHDHMEVEQALRDFYGTTG-AIVFSTGYMANLGIIST---LA-----GKGEYVILDADSHASIYDGCQQGNAEIVRFR 176 (427)
T ss_dssp CCCHHHHHHHHHHHHHHTCSE-EEEESCHHHHHHHHHHH---HS-----CTTCEEEEETTCCHHHHHHHHHSCSEEEEEC
T ss_pred CCcHHHHHHHHHHHHHhCCCc-eEEecCcHHHHHHHHHH---hc-----CCCCEEEECCcccHHHHHHHHHcCCeeEEeC
Confidence 444567789999999999874 56678888877554443 21 3678999999999888877888999999888
Q ss_pred CCCCCCCCHHHHHHHHHhcCC-CEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CC-----CC
Q 001989 709 TDAKGNINIEELRKAAEANRD-NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TS-----PG 780 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~-~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~~-----pg 780 (985)
. +|+++|++++++.++ ++++|+++++ |.+|.+. |+++|.++|+++|+++|+|++|..+..+- .. .+
T Consensus 177 ~-----~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~-~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~ 250 (427)
T 2w8t_A 177 H-----NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIA-PLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQG 250 (427)
T ss_dssp T-----TCHHHHHHHHHTSCSSSCEEEEEESEETTTTEEC-CHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTT
T ss_pred C-----CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCcc-CHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcC
Confidence 5 599999999984333 7899999988 5799998 89999999999999999999986332210 00 11
Q ss_pred -ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHH
Q 001989 781 -YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 781 -~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~ 859 (985)
..++|+++.++||+|+ .|| |++++++++.+.+...... ...+. .. ++..++++.+.
T Consensus 251 ~~~~~di~~~s~sK~~g------~~g-G~v~~~~~l~~~l~~~~~~-----------~~~~~-~~----~~~~~aa~~~a 307 (427)
T 2w8t_A 251 LEGQIDFVVGTFSKSVG------TVG-GFVVSNHPKFEAVRLACRP-----------YIFTA-SL----PPSVVATATTS 307 (427)
T ss_dssp CTTCCSEEEEESSSTTC------SCC-EEEEECCTTGGGGGGTCHH-----------HHSSC-CC----CHHHHHHHHHH
T ss_pred CCcCCcEEEecchhhhc------cCC-CEEEeCHHHHHHHHHhccc-----------ccccC-CC----CHHHHHHHHHH
Confidence 2257999999999984 344 8999988777655321000 00000 11 22233333455
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC
Q 001989 860 IAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS 938 (985)
Q Consensus 860 l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~ 938 (985)
+..+.. +.+..++..++++++.+.|++ ++.+...+..+. .+.+.++. +.+..++.++|.++||.+....
T Consensus 308 l~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~---~~~~~~~~-----~~~~~~l~~~L~~~Gi~v~~~~ 377 (427)
T 2w8t_A 308 IRKLMT--AHEKRERLWSNARALHGGLKAMGFRLGTETCDSA---IVAVMLED-----QEQAAMMWQALLDGGLYVNMAR 377 (427)
T ss_dssp HHHHTS--CHHHHHHHHHHHHHHHHHHHHHTCEESCSSCCSS---EEEEEESS-----HHHHHHHHHHHHHTTEECEEEC
T ss_pred HHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCC---EEEEEECC-----HHHHHHHHHHHHHCCeEEeeeC
Confidence 555432 355666788899999999987 444321210122 23455531 2346789999999999876543
Q ss_pred CC-C---CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccCC
Q 001989 939 WP-V---PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMGR 978 (985)
Q Consensus 939 ~p-~---~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~~ 978 (985)
+| + .+.+||+++..+|++||++ +++.|++++++++.-+
T Consensus 378 ~~~~~~~~~~lRi~~~~~~t~e~i~~--~~~~l~~~l~~~~~~~ 419 (427)
T 2w8t_A 378 PPATPAGTFLLRCSICAEHTPAQIQT--VLGMFQAAGRAVGVIG 419 (427)
T ss_dssp TTTSCTTCEEEEEECCTTCCHHHHHH--HHHHHHHHHHHHTCC-
T ss_pred CCCCCCCCeEEEEEeCCCCCHHHHHH--HHHHHHHHHHHhCccc
Confidence 32 1 2589999999999999999 8899999988776543
No 77
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.85 E-value=1.6e-20 Score=221.83 Aligned_cols=314 Identities=15% Similarity=0.141 Sum_probs=204.5
Q ss_pred hhHHHHHHHHHHHHHHHhCCCc----cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH-------
Q 001989 628 QGYQEMFNNLGEWLCTITGFDS----FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT------- 696 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~----~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~------- 696 (985)
++..++.+++++++++++|.+. +++++++|++++++++.++. +++|+||+++..|+.+...
T Consensus 86 ~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all--------~pGD~Vl~~~~~~~~~~~~~~~~~~~ 157 (483)
T 1rv3_A 86 EHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALV--------EPHGRIMGLDLPDGGHLTHGFMTDKK 157 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHT--------CTTCEEEEECGGGTCCGGGCCBCSSC
T ss_pred hhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHhc--------CCCCEEEEecCccCcCcchhhhhccc
Confidence 4556777788899999999985 34888899877755555432 4789999999888876431
Q ss_pred -HHHCC--cEEEEEcCC-CCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEcccccc
Q 001989 697 -AAMCG--MKIVSVGTD-AKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA 772 (985)
Q Consensus 697 -a~~~G--~~vv~v~~d-~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~ 772 (985)
+...| ++++.++++ +++.+|+++|++++++ +++++|++ +++..+.+. |+++|+++|+++|+++++|++|..+
T Consensus 158 ~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~--~~tklIi~-~~sn~~~~~-dl~~i~~ia~~~g~~livD~ah~~g 233 (483)
T 1rv3_A 158 KISATSIFFESMAYKVNPDTGYIDYDRLEENARL--FHPKLIIA-GTSCYSRNL-DYGRLRKIADENGAYLMADMAHISG 233 (483)
T ss_dssp BCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH--HCCSEEEE-CCSSCCSCC-CHHHHHHHHHHTTCEEEEECTTTHH
T ss_pred CcccccceEEEEECccccCCCcCCHHHHHHHHhh--cCCcEEEE-eCCcCCCcC-CHHHHHHHHHHcCCEEEEEccchhc
Confidence 22334 566666666 5689999999999974 46778888 654333666 8999999999999999999998644
Q ss_pred ccC--C-CCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCC--CCCCCCCCCCCCCCCCcch
Q 001989 773 QVG--L-TSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTG--GIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 773 ~~~--l-~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~--~~~~~~~~~~~~~i~s~~~ 847 (985)
+.. . ..|.. ++|++++|+||+| +||.+|++++++++.. +. ...|... +....-.....+...+++
T Consensus 234 ~~~~~~~~~p~~-~~div~~s~~K~l------~GprgG~i~~~~~~~~-~~-~~~g~~~~y~~~~~~~~~~~~~~~g~~- 303 (483)
T 1rv3_A 234 LVVAGVVPSPFE-HCHVVTTTTHKTL------RGCRAGMIFYRRGVRS-VD-PKTGKEILYNLESLINSAVFPGLQGGP- 303 (483)
T ss_dssp HHHHTSSCCGGG-TCSEEEEESSGGG------CCCSCEEEEEECSBCC---------CCBCCHHHHHHHHHTTTTCCSC-
T ss_pred ccccCCCCCCCC-CCcEEEecCcccC------CCCCceEEEEcchhhh-hc-cccCcchhhHHHHHhhhhcCCcccCCc-
Confidence 321 1 11211 6899999999998 4676699999976542 21 0000000 000000000000001111
Q ss_pred hhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHH
Q 001989 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~ 926 (985)
.....++..+.+..+..++++++.++..++++++.+.|++ ++.+..++. ..+.++++++. .+.+..++.+.
T Consensus 304 -~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~---~~~~~~v~~~~----~g~~~~~~~~~ 375 (483)
T 1rv3_A 304 -HNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGS---DNHLILVDLRS----KGTDGGRAEKV 375 (483)
T ss_dssp -CHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC---SSSEEEEEGGG----GTCCHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcCCEeccCCC---CCceEEEeccC----CCCCHHHHHHH
Confidence 0111112223455555567888888899999999999987 555543221 12235667652 25678889999
Q ss_pred HHHCCCccC----CCC-CC-CCCEEEEeccCCCC----HHHHHHHHccCChhHHHHh
Q 001989 927 LMDYGFHGP----TMS-WP-VPGTLMIEPTESES----KSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 927 L~~~Gi~~~----~~~-~p-~~~~lris~t~~~t----~eeId~~~~~~~l~~~~~~ 973 (985)
|.+.||.+. .-. .+ ..+.+||+++..+| ++|+++ +++.|++++..
T Consensus 376 L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~--~~~~l~~~l~~ 430 (483)
T 1rv3_A 376 LEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQK--VAHFIHRGIEL 430 (483)
T ss_dssp HHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHH--HHHHHHHHHHH
T ss_pred HHhCCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHH--HHHHHHHHHHh
Confidence 999999875 211 11 24789999988777 999999 77888888765
No 78
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.85 E-value=2.5e-20 Score=209.73 Aligned_cols=306 Identities=15% Similarity=0.141 Sum_probs=196.5
Q ss_pred HHHHHHHHHhCCCcc----ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH--------HHHCC--
Q 001989 636 NLGEWLCTITGFDSF----SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT--------AAMCG-- 701 (985)
Q Consensus 636 e~~~~la~l~G~~~~----~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~--------a~~~G-- 701 (985)
-+.+..+++||++.+ ++++.||++|++++++|+. +|+|+|+..+..||.|..- ....|
T Consensus 104 la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All--------~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~ 175 (490)
T 3ou5_A 104 LCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL--------QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIF 175 (490)
T ss_dssp HHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC--------C-CCCEECBC------------------------
T ss_pred HHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHc--------CCCCEEEecccCCCCcccccccCCCccccccccc
Confidence 345667899999985 8999999999988888764 5889999988888765321 12233
Q ss_pred cEEEEEcCCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccc---cCCC
Q 001989 702 MKIVSVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ---VGLT 777 (985)
Q Consensus 702 ~~vv~v~~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~---~~l~ 777 (985)
++++.+++|+ ++.+|.|++++...+++|+ +|++....+.-.+ |++++.++|++.|++|++|.+|..++ +.+.
T Consensus 176 ~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPk--lIi~G~SaY~r~i--d~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~p 251 (490)
T 3ou5_A 176 FESMPYKLNPKTGLIDYNQLALTARLFRPR--LIIAGTSAYARLI--DYARMREVCDEVKAHLLADMAHISGLVAAKVIP 251 (490)
T ss_dssp ----CBCEETTTTEECHHHHHHHHHHHCCS--EEEECCSSCCSCC--CHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSC
T ss_pred ccccccccCCCCCcccHHHHHHHHhhcCCC--eEEECCccCcccc--CHHHHHHHHhhcccEEEechhhhhhhhcccccC
Confidence 3555556664 5899999999999876554 5666554454444 79999999999999999999996544 3355
Q ss_pred CCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHH
Q 001989 778 SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISY 857 (985)
Q Consensus 778 ~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~ 857 (985)
+|-.+ +||+++++|||| .||++|+|.+++......+..--....+..+.--...++.+.+++. ....++.|.
T Consensus 252 sP~~~-ADvVTtTTHKTL------rGPrGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~-~h~IAAkAV 323 (490)
T 3ou5_A 252 SPFKH-ADIVTTTTHKTL------RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPH-NHAIAAVAV 323 (490)
T ss_dssp CGGGT-CSEEEEESSSTT------CSCSCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCC-HHHHHHHHH
T ss_pred Ccccc-ceEEeccccccc------cCCCceEEEeccccccccccccchhHHHHHHHHHhhcCccccccch-HHHHHHHHH
Confidence 67665 999999999998 6899999999875322111000000000000000000111111111 112334445
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCC
Q 001989 858 TYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT 936 (985)
Q Consensus 858 a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~ 936 (985)
++...+.++ ++++++++.+|++.|++.|.+ |++++.. +...|.++++++. .+++..++.+.|.+.||.++.
T Consensus 324 af~Ea~~p~-fk~Ya~qVv~NAkaLA~~L~~~G~~vvsG---gTdnHlvLvDl~~----~g~tG~~ae~~Le~agItvNk 395 (490)
T 3ou5_A 324 ALKQACTPM-FREYSLQVLKNARAMADALLERGYSLVSG---GTDNHLVLVDLRP----KGLDGARAERVLELVSITANK 395 (490)
T ss_dssp HHHHHHSHH-HHHHHHHHHHHHHHHHHHHHHTTCEEGGG---SCSSSEEEEECGG----GTCCHHHHHHHHHHTTEECEE
T ss_pred HHHHHHhHh-HHHHHHHHHHHHHHHHHHHHhCCCeeecC---CCCceEEEEeccc----cCCCHHHHHHHHHHcCcEECC
Confidence 555556655 688999999999999999987 8988754 3456778898863 477889999999999998763
Q ss_pred --CC---CC-CCCEEEEeccC----CCCHHHHHHHHccCChhHHH
Q 001989 937 --MS---WP-VPGTLMIEPTE----SESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 937 --~~---~p-~~~~lris~t~----~~t~eeId~~~~~~~l~~~~ 971 (985)
+. .| +++.|||..++ -..++|+++ ..+.|.+++
T Consensus 396 N~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~--IA~~I~~~l 438 (490)
T 3ou5_A 396 NTCPGDRSAITPGGLRLGAPALTSRQFREDDFRR--VVDFIDEGV 438 (490)
T ss_dssp ECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHH--HHHHHHHHH
T ss_pred CCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHH--HHHHHHHHH
Confidence 21 12 45789998764 466788887 445555444
No 79
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.85 E-value=6e-20 Score=212.07 Aligned_cols=308 Identities=16% Similarity=0.137 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCE-EEEcCCCCcccHHHH----HHC--CcE
Q 001989 632 EMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNV-CIIPVSAHGTNPATA----AMC--GMK 703 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~-IIv~~~~Hg~~~~~a----~~~--G~~ 703 (985)
+...++++++++++|.+... ++.++|+++.+.++.+++.+.... .++++ |+++..+|+++.... +.. |++
T Consensus 71 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~~~~~~--~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~ 148 (416)
T 1qz9_A 71 DLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATR--SPERRVIVTETSNFPTDLYIAEGLADMLQQGYT 148 (416)
T ss_dssp GHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHH--STTCCEEEEETTSCHHHHHHHHHHHHHHCSSCE
T ss_pred HHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhccccccc--CCCCcEEEEcCCCCCchHHHHHHHHHHhcCCce
Confidence 45678999999999987533 445666666655555443221000 24555 566667787654432 233 999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
++.+|+ +++|+++|+ +++++|++++|+ ++|.+. |+++|.++|+++|+++|+|++|..+...+ ....+
T Consensus 149 ~~~v~~-------~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~g~~~~-~~~~~ 216 (416)
T 1qz9_A 149 LRLVDS-------PEELPQAID---QDTAVVMLTHVNYKTGYMH-DMQALTALSHECGALAIWDLAHSAGAVPV-DLHQA 216 (416)
T ss_dssp EEEESS-------GGGHHHHCS---TTEEEEEEESBCTTTCBBC-CHHHHHHHHHHHTCEEEEECTTTTTTSCC-CHHHH
T ss_pred EEEeCc-------HHHHHHHhC---CCceEEEEeccccCccccc-CHHHHHHHHHHcCCEEEEEccccccCcCC-Chhhc
Confidence 999885 788999887 789999999984 699998 89999999999999999999986332211 12245
Q ss_pred CCcEEEeCCcccccccCCCCCCce-EEEEEcccccCcCCCCccccCCC--CC----CCCC---CCCCCCCCCcchhhhHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGM-GPIGVKKHLAPFLPSHPVVSTGG--IP----APEK---SQPLGTIAAAPWGSALI 852 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~-G~i~~~~~l~~~lp~~~~g~~~~--~~----~~~~---~~~~~~i~s~~~g~~~~ 852 (985)
++|++++|+||+++ +||++ |++++++++.+.+.....|+.+. .. .+.. .... ...+. +...
T Consensus 217 ~~d~~~~s~~K~l~-----~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~ 287 (416)
T 1qz9_A 217 GADYAIGCTYKYLN-----GGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARY-LCGTQ---PITS 287 (416)
T ss_dssp TCSEEEECSSSTTC-----CCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGG-CCSCC---CHHH
T ss_pred CCCEEEecCcccCC-----CCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHh-cCCCC---CHHH
Confidence 79999999999973 57887 99999988765554322221000 00 0000 0000 00000 1222
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc-C--CeeecCCCC--ceeeEEEEEecCccccCCCCHHHHHHHH
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH-Y--PILFRGVNG--TVAHEFIVDLRGLKNTAGIEPEDVAKRL 927 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g-~--~l~~~~~~~--~~~~~~iv~~~~~~~~~g~~~~~v~~~L 927 (985)
+.++.+.+..+..+++.+..++..++++++.++|++. . ++....+.+ ...+.+.+.++ +..++.+.|
T Consensus 288 ~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~l 359 (416)
T 1qz9_A 288 LAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP--------EGYAVIQAL 359 (416)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC--------CHHHHHHHH
Confidence 3334456666665677788888899999999999762 2 332222211 01222445543 367899999
Q ss_pred HHCCCccCCCCCCCCCEEEEecc-CCCCHHHHHHHHccCChhHHHHhhc
Q 001989 928 MDYGFHGPTMSWPVPGTLMIEPT-ESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 928 ~~~Gi~~~~~~~p~~~~lris~t-~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.++||.+... ..+.+||+++ ..+|++||++ +++.|++++++..
T Consensus 360 ~~~gi~~~~~---~~~~lRis~~~~~~t~~~i~~--~~~~l~~~~~~~~ 403 (416)
T 1qz9_A 360 IDRGVIGDYR---EPRIMRFGFTPLYTTFTEVWD--AVQILGEILDRKT 403 (416)
T ss_dssp HTTTEECEEE---TTTEEEEECCTTTCCHHHHHH--HHHHHHHHHHHTT
T ss_pred HhCCcEeccC---CCCeEEEeCcccCCCHHHHHH--HHHHHHHHHhccc
Confidence 9999986421 2479999998 5899999999 8899999887644
No 80
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.85 E-value=4.1e-20 Score=211.21 Aligned_cols=318 Identities=11% Similarity=0.042 Sum_probs=206.7
Q ss_pred ecCCCCCCCCCcHHHHHHHHhCCcccccc--CCCh----hhHhhhHHHHHHHHHHHHHHhcCCCC-cceee-ccchHHHH
Q 001989 170 FIGMGYYNTHVPPVILRNIMENPAWYTQY--TPYQ----AEIAQGRLESLLNFQTMIADLTGLPM-SNASL-LDEGTAAA 241 (985)
Q Consensus 170 ~lG~g~y~~~~p~~v~~~i~~~~~~~t~~--~pyq----~e~sqg~l~~i~e~q~~ia~L~g~~~-~~~sl-~~~~ta~~ 241 (985)
+..+| |..+|+.|.+++.. +++.| +|.. ...++...+.+.++++.+++|+|++. .++.+ +.|+|.++
T Consensus 30 l~~ag--pt~~p~~V~~a~~~---~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~ 104 (386)
T 3qm2_A 30 NFSSG--PAMLPAEVLKLAQQ---ELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQF 104 (386)
T ss_dssp ECCSS--SCCCCHHHHHHHTC---C-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHH
T ss_pred cccCC--CCCCCHHHHHHHHH---HHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHH
Confidence 34555 44688888755432 23322 1211 11244556889999999999999965 46777 58999888
Q ss_pred HHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch-----------hhhc-cCCCEeEEEEEc-CCC
Q 001989 242 EAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK-----------DIDY-KSGDVCGVLVQY-PGT 308 (985)
Q Consensus 242 ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~-----------~l~~-l~~~t~~V~v~~-pn~ 308 (985)
++++..+ + +++|+|++....|.+. .|...++..| ++++++.+ +++. ++++|++|++++ .|.
T Consensus 105 n~ai~~l-~--~~gd~v~~~~~~~~~~--~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~ 178 (386)
T 3qm2_A 105 AGVPLNL-L--GDKTTADYVDAGYWAA--SAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETI 178 (386)
T ss_dssp HHHHHHH-C--TTCCEEEEEESSHHHH--HHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEECSEETT
T ss_pred HHHHHhc-c--CCCCeEEEEeCCHHHH--HHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCC
Confidence 7776654 2 2789987666555444 3444466778 77766433 3444 788999998876 488
Q ss_pred Ceee-ccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCc
Q 001989 309 EGEV-LDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGR 386 (985)
Q Consensus 309 ~G~v-~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~ 386 (985)
+|++ .||++|+ +|++++||+ ..++|.+ .+..+||+ +++++||+.+| ||+|++++++++++++++.
T Consensus 179 tG~~i~pi~~i~-----~g~~~~vDa-~qs~g~~pidv~~~~~--~~~s~hK~lGP-----~G~g~l~v~~~~~~~~~~~ 245 (386)
T 3qm2_A 179 DGIAIDETPDFG-----PEVVVTADF-SSTILSAPLDVSRYGV--IYAGAQKNIGP-----AGLTLVIVREDLLGKAHES 245 (386)
T ss_dssp TTEECCCCCCCC-----TTCCEEEEC-TTTTTSSCCCGGGCSE--EEEETTTTTCC-----TTEEEEEEEGGGCSCCCTT
T ss_pred cCEecCchhhhc-----CCCEEEEEc-ccccCCCCCCccccCE--EEEecccccCC-----CccEEEEECHHHHhhhccc
Confidence 9996 9999986 799999964 4566654 34467764 56888554235 5799999999998777542
Q ss_pred eeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHHHHHHhcCC
Q 001989 387 IVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKLG 465 (985)
Q Consensus 387 ~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g 465 (985)
... + +++... +...+..+|+|+ .+++++.+++ .++..+ |++++.++..+++++++++|+++|
T Consensus 246 ~p~----------~-~~~~~~-~~~~~~~gTp~v---~~i~~l~~Al--~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~ 308 (386)
T 3qm2_A 246 CPS----------I-LDYTVL-NDNDSMFNTPPT---FAWYLSGLVF--KWLKAQGGVAAMHKINQQKAELLYGVIDNSD 308 (386)
T ss_dssp SCG----------G-GCHHHH-HHC-------CC---SHHHHHHHHH--HHHHHHTHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCc----------H-HHHHHH-hhcCCCCCCCcH---HHHHHHHHHH--HHHHHhcCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 111 1 111111 111122478888 5677777776 555566 899999999999999999999987
Q ss_pred Ce-EEc-CC-CCc-ceEEEecCC---HHHHHHHHHHcCceeeee--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 466 TV-EVQ-GL-PFF-DTVKVKCAD---AHAIASAAYKIEMNLRVV--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 466 ~~-~~~-~~-~~~-~~~~~~~~~---~~~v~~~L~~~GI~~~~~--~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+ ... .+ ... ..++|.+++ ..++.+.|.++||.++.- ..+.+|+|+..++|+||||+|+++|++
T Consensus 309 -~~~~~~~~~~rs~~iv~f~~~~~~~~~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~ 380 (386)
T 3qm2_A 309 -FYRNDVAQANRSRMNVPFQLADNTLDKVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMID 380 (386)
T ss_dssp -SEECCBCGGGBCSSEEEEEESSGGGHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred -CcccCCCHHHcCceEEEEECCCccccHHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5 333 21 122 356677663 457778899999987532 126699999999999999999999974
No 81
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.85 E-value=1.7e-19 Score=203.65 Aligned_cols=286 Identities=16% Similarity=0.112 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHhCCCccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 634 FNNLGEWLCTITGFDSFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
..++++++++++|.+...+ +.++|++++..++.++. .++++|+++.+.|..+...++..|++++.+|.+++
T Consensus 53 ~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 124 (354)
T 3ly1_A 53 ILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYA--------SLEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLDN 124 (354)
T ss_dssp HHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEESSSCTHHHHHHHHTTCEEEEECCCTT
T ss_pred hHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHHh--------CCCCeEEECCCCchHHHHHHHHcCCEEEEecCCCC
Confidence 4578899999999876554 44556666644443321 36789999988887777778889999999999888
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHH--cCCEEEEEccccccc-cCC-CCC----Ccc-
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHD--NGGQVYMDGANMNAQ-VGL-TSP----GYI- 782 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~--~galliVD~a~~~~~-~~l-~~p----g~~- 782 (985)
+.+|+++|+++++++ +++++|++++|+ ++|.+. |++++.++++. +|+++++|+++.... .+- ..+ ...
T Consensus 125 ~~~d~~~l~~~l~~~-~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 202 (354)
T 3ly1_A 125 WAFDIEGLKAAVAAY-SGPSIVYLVNPNNPTGTIT-PADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGA 202 (354)
T ss_dssp SCCCHHHHHHHHHTC-SSCEEEEEESSCTTTCCCC-CHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTC
T ss_pred CCCCHHHHHHHhccC-CCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcC
Confidence 999999999999732 478999999985 699997 78888888877 999999999984211 110 011 122
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
+.++++.|+||+|+. +|.++|++++++++.+.+.... . ..+. +.....++.+++.
T Consensus 203 ~~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~------------~--~~~~------~~~~~~a~~~~l~- 257 (354)
T 3ly1_A 203 ENIILLKTFSKIHAM----AGMRVGYAVAHPTVIALMGRYV------------A--GEKI------NFSGVDAALASMN- 257 (354)
T ss_dssp SSEEEEEESSSTTCC----GGGCCEEEECCHHHHHHHGGGT------------T--CSCC------CHHHHHHHHHHTT-
T ss_pred CCEEEEeeChhhccC----hhhhheeeecCHHHHHHHHHhc------------C--CCCC------CHHHHHHHHHHhc-
Confidence 556889999999854 3678899998877665443210 0 0111 1122222233333
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC-C
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW-P 940 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~-p 940 (985)
..+.+.+..++..++++++.+.|++ ++.+. .+.+. + +.+.++ + +..++.+.|.++||.+. ..+ +
T Consensus 258 -~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~-~--~~~~~~------~-~~~~~~~~l~~~gi~v~-g~~~~ 323 (354)
T 3ly1_A 258 -DSAFITYSKKSNDVSRQILLKALEDLKLPYL--PSEGN-F--VFHQLV------V-PLKDYQTHMADAGVLIG-RAFPP 323 (354)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHTCCBC--CCCSS-E--EEEECS------S-CHHHHHHHHHHTTEECC-CCCTT
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHCCCeEC--CCCce-E--EEEECC------C-CHHHHHHHHHHCCEEEe-ecCCC
Confidence 2255677777788889999999987 45442 22222 2 345554 2 67899999999999886 333 2
Q ss_pred CCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 941 VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 941 ~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.++.+||+++ +++|+++ +++.|++++++
T Consensus 324 ~~~~iRis~~---~~~~i~~--~~~~l~~~l~~ 351 (354)
T 3ly1_A 324 ADNWCRISLG---TPQEMQW--VADTMREFRKK 351 (354)
T ss_dssp CTTEEEEECC---CHHHHHH--HHHHHHHHHHT
T ss_pred CCCEEEEEcC---CHHHHHH--HHHHHHHHHHh
Confidence 4589999985 8999999 77888887764
No 82
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.85 E-value=1.7e-19 Score=209.61 Aligned_cols=321 Identities=13% Similarity=0.127 Sum_probs=203.6
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHH-HHHH---hcCC---------CCCCEEEEcCCCCcc
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIR-AYHK---ARGD---------HHRNVCIIPVSAHGT 692 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air-~~~~---~~g~---------~~~~~IIv~~~~Hg~ 692 (985)
..+..+...++++++++++|.+... ++.++|++|+..++.++. .+.. .+|. ...++|+++...|.+
T Consensus 56 ~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s 135 (432)
T 3a9z_A 56 GRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDS 135 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchh
Confidence 3456677889999999999997544 555667777766666553 2211 1220 011456666666665
Q ss_pred cHHH----HHHCCcEEEEEcCCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcC------
Q 001989 693 NPAT----AAMCGMKIVSVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNG------ 760 (985)
Q Consensus 693 ~~~~----a~~~G~~vv~v~~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~g------ 760 (985)
+... ++..|++++.+|+++ ++.+|+++|+++++ +++++|++++|+ ++|.+. |+++|.++|+++|
T Consensus 136 ~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~~~~~~ 211 (432)
T 3a9z_A 136 IRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVR---PTTCLVTIMLANNETGVIM-PISEISRRIKALNQIRAAS 211 (432)
T ss_dssp HHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCC---TTEEEEECCSBCTTTCBBC-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhcc---CCceEEEEECcccCccccc-CHHHHHHHHHhcCcccccc
Confidence 5333 234799999999976 78899999999997 789999999984 699998 8999999999999
Q ss_pred ----CEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccc-cCcCCCCccccCCCCCCCCC
Q 001989 761 ----GQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHL-APFLPSHPVVSTGGIPAPEK 835 (985)
Q Consensus 761 ----alliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l-~~~lp~~~~g~~~~~~~~~~ 835 (985)
+++|+|++|..+...+ ....+++|+++.|+||++ ||++|+++++++. ...+.....++... ...
T Consensus 212 ~~~~~~livDea~~~~~~~~-~~~~~~~d~~~~s~~K~~-------g~~~G~~~~~~~~~~~~~~~~~~~~~~~---~~~ 280 (432)
T 3a9z_A 212 GLPRVLVHTDAAQALGKRRV-DVEDLGVDFLTIVGHKFY-------GPRIGALYVRGVGKLTPLYPMLFGGGQE---RNF 280 (432)
T ss_dssp TCCCCEEEEECTTTTTTSCC-CHHHHCCSEEEEEGGGTT-------CCSCEEEEETTBTTTBCCCCSCCSSCGG---GGT
T ss_pred cCCceEEEEEchhhhCCccc-ChhhcCCCEEEEehhHhc-------CCcceEEEEccccccCCcCceeecCCcc---ccc
Confidence 9999999985432111 112357999999999986 3679999999765 33332222221100 001
Q ss_pred CCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeecCC--C-CceeeEEEEEec
Q 001989 836 SQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGV--N-GTVAHEFIVDLR 910 (985)
Q Consensus 836 ~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~--~-~~~~~~~iv~~~ 910 (985)
..++.+ ...+.++.+.+..+ .+++.+..++..++++++.++|++ ++.+.+.++ . ......+.+.+.
T Consensus 281 ~~~~~~--------~~~~~a~~aal~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 351 (432)
T 3a9z_A 281 RPGTEN--------TPMIAGLGKAADLV-SENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQ 351 (432)
T ss_dssp SCSCCC--------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEEC
T ss_pred cCCCcC--------HHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeC
Confidence 111111 11122222334433 346777788888999999999976 444433222 0 011112334443
Q ss_pred CccccCCCCHHHHHHHHH----HCCCccCCC----------CCCC-----CCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 911 GLKNTAGIEPEDVAKRLM----DYGFHGPTM----------SWPV-----PGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 911 ~~~~~~g~~~~~v~~~L~----~~Gi~~~~~----------~~p~-----~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
. .+.+..++.+.|. +.|+.+... .+.+ .+.+||++...+|+||+++ +++.|++++
T Consensus 352 ~----~~~~~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~--~~~~l~~~~ 425 (432)
T 3a9z_A 352 G----SQLRGYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDL--IVQDLKQAV 425 (432)
T ss_dssp S----TTCCHHHHHHHCSSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHH--HHHHHHHHH
T ss_pred C----CCCcHHHHHHHhcCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHH--HHHHHHHHH
Confidence 1 1235666666552 123322110 0011 3789999999999999999 889999999
Q ss_pred HhhccC
Q 001989 972 HRLKMG 977 (985)
Q Consensus 972 ~~~~~~ 977 (985)
++++.+
T Consensus 426 ~~~~~~ 431 (432)
T 3a9z_A 426 NQLEGP 431 (432)
T ss_dssp HHHHSC
T ss_pred HHhcCC
Confidence 888765
No 83
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.85 E-value=5.7e-21 Score=215.71 Aligned_cols=306 Identities=11% Similarity=0.046 Sum_probs=197.3
Q ss_pred hhHHHHHHHHHHHHHHHhCCCc-c-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH--HHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDS-F-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP--ATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~-~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~--~~a~~~G~~ 703 (985)
++..+...++++++++++|.+. . .++.++|++|+..++.++. .+ ++++....|..+. ..++..|++
T Consensus 39 ~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~--------~~--~~i~~~~~~~~~~~~~~~~~~g~~ 108 (362)
T 3ffr_A 39 KKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV--------EK--KSFHCVNGSFSKRFYEFAGELGRE 108 (362)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC--------SS--EEEEEECSHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc--------CC--cEEEEcCcHHHHHHHHHHHHhCCC
Confidence 3556778899999999999853 2 3556777776654444331 23 4444333222222 235678999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHc-CCEEEEEccccccccCCCCCCc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDN-GGQVYMDGANMNAQVGLTSPGY 781 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~-galliVD~a~~~~~~~l~~pg~ 781 (985)
++.++.++++.+|+++|+ ++ ++|++|++++| |++|.+. |+++|+++|+++ |+++++|++|..+.... ...
T Consensus 109 ~~~v~~~~~~~~d~~~l~--~~---~~~~~v~~~~~~nptG~~~-~l~~i~~la~~~p~~~li~D~a~~~~~~~~-~~~- 180 (362)
T 3ffr_A 109 AYKEEAAFGKGFYPADIT--VP---ADAEIICLTHNETSSGVSM-PVEDINTFRDKNKDALIFVDAVSSLPYPKF-DWT- 180 (362)
T ss_dssp EEEEECCTTCCCCGGGCC--CC---TTCCEEEEESEETTTTEEC-CHHHHTTSGGGSTTSEEEEECTTTTTSSCC-CTT-
T ss_pred eEEEecCCCCCCCHHHHh--cc---CCccEEEEEcCCCCcceeC-CHHHHHHHHHhCCCCEEEEecccccCCccc-Chh-
Confidence 999999888899999998 54 78999999998 5799998 899999999999 99999999985332111 111
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCcccc-CCCC-CC---C-C-CC-CCCCCCCCcchhhhHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVS-TGGI-PA---P-E-KS-QPLGTIAAAPWGSALIL 853 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~-~~~~-~~---~-~-~~-~~~~~i~s~~~g~~~~~ 853 (985)
.+|++++++||+|+ |++|+|++++++++.+.+.....|+ .... .. + . .+ ..+.... +....
T Consensus 181 -~~d~~~~s~~K~~~-----~~~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 249 (362)
T 3ffr_A 181 -KIDSVFFSVQKCFG-----LPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETP-----NAMNI 249 (362)
T ss_dssp -SCSEEEEETTSTTC-----CCSCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCC-----CHHHH
T ss_pred -HCcEEEEecccccC-----CCCceEEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCc-----hHHHH
Confidence 28999999999984 2467899998876543322110000 0000 00 0 0 00 0001111 11222
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecC-CCC-ceeeEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001989 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRG-VNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 854 ~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~-~~~-~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~G 931 (985)
.+..+.+..+..+|+.+..++..++++++.+.|++..++.... ... .....+.+.++ + +..++.++|.++|
T Consensus 250 ~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~l~~~g 322 (362)
T 3ffr_A 250 FLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTT------M-LPGEINKILEPFD 322 (362)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEES------S-CHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecC------C-CHHHHHHHHHHCC
Confidence 2233455555566788888888999999999998632332211 101 11223445554 3 6889999999999
Q ss_pred CccCCC-CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 932 FHGPTM-SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 932 i~~~~~-~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
|.+..- .....+.+||+++..++++||++ +++.|++++
T Consensus 323 i~~~~g~~~~~~~~iRis~~~~~~~e~i~~--l~~~l~~~~ 361 (362)
T 3ffr_A 323 MAVGAGYGSKKETQIRIANFPAHSLEQVHK--LVQTLKEKI 361 (362)
T ss_dssp EEEEECSGGGTTTEEEEECCTTSCHHHHHH--HHHHHHHHT
T ss_pred eEEecCccccCCCEEEEECCCCCCHHHHHH--HHHHHHHHh
Confidence 987532 11125799999999999999999 667776653
No 84
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.85 E-value=4e-20 Score=211.62 Aligned_cols=303 Identities=15% Similarity=0.116 Sum_probs=201.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--ccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--SFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+++.+++.+.+|.+ ... ++.++|++|+..++.++. .++++|++++..|..+...++..|+++
T Consensus 67 ~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~ 138 (388)
T 1j32_A 67 AGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI--------EPGDEVIIPAPFWVSYPEMVKLAEGTP 138 (388)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEESSCCTHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhc--------CCCCEEEEcCCCChhHHHHHHHcCCEE
Confidence 455666777777777777753 334 445566666654444331 367899999888887777788899999
Q ss_pred EEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC--C
Q 001989 705 VSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG--L 776 (985)
Q Consensus 705 v~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~--l 776 (985)
+.+|.++ ++.+|+++|+++++ +++++|++++|+ ++|.+. .++++|.++|+++|+++++|+++.... .+ .
T Consensus 139 ~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~ 215 (388)
T 1j32_A 139 VILPTTVETQFKVSPEQIRQAIT---PKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQH 215 (388)
T ss_dssp EEECCCGGGTTCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC
T ss_pred EEecCCcccCCCCCHHHHHHhcC---cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCC
Confidence 9999875 57799999999997 789999999994 699984 159999999999999999999984211 11 0
Q ss_pred CCCC-----ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 777 TSPG-----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 777 ~~pg-----~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
.... ..+.|+++.|+||+|+.| |.++|++++++++.+.+..... ..+.+. +..
T Consensus 216 ~~~~~~~~~~~~~~~~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~~~~~------------~~~~~~------~~~ 273 (388)
T 1j32_A 216 LSIGAASPEAYERSVVCSGFAKTYAMT----GWRVGFLAGPVPLVKAATKIQG------------HSTSNV------CTF 273 (388)
T ss_dssp CCGGGSCHHHHHTEEEEEESTTTTTCT----TTCCEEEECCHHHHHHHHHHHH------------TTTCSC------CHH
T ss_pred CCHHHccccccCCEEEEeechhccCCc----ccceEEEEeCHHHHHHHHHHHh------------hcccCC------CHH
Confidence 0111 145789999999998532 4568999998776544321100 001111 112
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH-C
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD-Y 930 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~-~ 930 (985)
...++.++|. .+.+.+.+..++..++++++.+.|++..++....+.+..+ +.+.++. .+.+..++.++|.+ +
T Consensus 274 ~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~l~~~~ 346 (388)
T 1j32_A 274 AQYGAIAAYE-NSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFY--MFPSIAK----TGRSSLDFCSELLDQH 346 (388)
T ss_dssp HHHHHHHHHH-SCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTE--ECCBCGG----GTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeEE--EEEecCC----CCCCHHHHHHHHHHhC
Confidence 2222334443 2345566777778888999999998621332222222221 2233321 13567899999986 6
Q ss_pred CCccCCC-CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 931 GFHGPTM-SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 931 Gi~~~~~-~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
||.+... .+..++++|+++. +++++|++ +++.|+++++++
T Consensus 347 gi~v~~g~~~~~~~~iRis~~--~~~~~i~~--~~~~l~~~l~~~ 387 (388)
T 1j32_A 347 QVATVPGAAFGADDCIRLSYA--TDLDTIKR--GMERLEKFLHGI 387 (388)
T ss_dssp CEECEEGGGGTCTTBEEEECC--SCHHHHHH--HHHHHHHHHHHH
T ss_pred CEEEeChhhhCCCCcEEEEec--CCHHHHHH--HHHHHHHHHHHh
Confidence 9987532 2323589999996 69999999 778888887654
No 85
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.84 E-value=7.8e-19 Score=207.39 Aligned_cols=359 Identities=10% Similarity=0.013 Sum_probs=228.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCc---cceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHH
Q 001989 139 MKFSKFDEGLTESQMIEHMQKLASMNKV---YKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLN 215 (985)
Q Consensus 139 ~~lp~~~~~~se~e~~~~~~~l~~~n~~---~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e 215 (985)
..+| ..+.+-.++++.+.++...+.. ..+|.|.-.-+...|+.+.+.+.+ .+-.....| +.+.+..+...+
T Consensus 49 ~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~n~~~~~~--~~~p~~~~lE~~ 122 (481)
T 4e1o_A 49 ESAP--EDPDSWDSIFGDIERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLAD--AINCLGFTW--ASSPACTELEMN 122 (481)
T ss_dssp SSCC--SSCCCHHHHHHHHHHHTGGGCCCTTSTTBCSSSCCCCCHHHHHHHHHHH--HHCCCCSST--TTCHHHHHHHHH
T ss_pred CCCC--CCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeCCCCCCHHHHHHHHHHH--HhCcccCCc--CCCcHHHHHHHH
Confidence 3566 5778999999999997544321 223444332223355555433221 111111222 345666777778
Q ss_pred HHHHHHHhcCCCCc----------ceeeccchHHHHHHHHHHhhhhc----------------CCCCEEEEcCCCChhHH
Q 001989 216 FQTMIADLTGLPMS----------NASLLDEGTAAAEAMAMCNNIQK----------------GKKKTFIIASNCHPQTI 269 (985)
Q Consensus 216 ~q~~ia~L~g~~~~----------~~sl~~~~ta~~ea~~~a~~~~~----------------~~g~~Vlv~~~~H~s~~ 269 (985)
..+++++++|.+.+ ...+++|||.+...++++.+... .++++|++++..|.++.
T Consensus 123 v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 202 (481)
T 4e1o_A 123 VMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVE 202 (481)
T ss_dssp HHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHH
T ss_pred HHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHH
Confidence 88999999999864 45778888876665555432110 14679999999999999
Q ss_pred HHHHHhhcCCCeEEEEeCc--------hhhhc-cCCC------EeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEe
Q 001989 270 DICITRADGFDIKVVVSDL--------KDIDY-KSGD------VCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMAT 333 (985)
Q Consensus 270 ~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~~------t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a 333 (985)
+.++. .|++++.++. ++|++ +.++ +.+|+++.+ |.+|.++|+++|+++||++|++++||+
T Consensus 203 ~~~~~----~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDa 278 (481)
T 4e1o_A 203 KAGLI----SLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDA 278 (481)
T ss_dssp HHHHH----HTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHh----CCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeeh
Confidence 98753 3778888764 35665 5432 677888876 679999999999999999999999964
Q ss_pred cCccccCCCCC----Cccc---ceEEEecC-ccccccCCCCCCcEEEEEEchh-hHh-cCC--CceeeeeecCCCCccee
Q 001989 334 DLLALTILKPP----GELG---ADIVVGSA-QRFGVPMGYGGPHAAFLATSQE-YKR-MMP--GRIVGVSIDSSGKPALR 401 (985)
Q Consensus 334 ~~~~lg~l~~~----~~~G---aDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~-~~~-~lp--~~~vG~t~d~~g~~~~~ 401 (985)
.++.+.+..+ ...| +|.++.++ |+|+.|. ++|+++++++ +++ .+. +..+.. ....+...+
T Consensus 279 -A~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~-----g~g~l~~~~~~~l~~~~~~~~~yl~~-~~~~~~~~~- 350 (481)
T 4e1o_A 279 -AYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHF-----DCTGFWVKDKYKLQQTFSVNPIYLRH-ANSGVATDF- 350 (481)
T ss_dssp -TTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS-----SCEEEEESBHHHHHTTTCCCCGGGCC-TTTTTSCCG-
T ss_pred -hhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCC-----ceEEEEEeCHHHHHHHhcCCchhccC-cccCCCCCc-
Confidence 3333322111 1124 59999999 7787774 3567788764 332 221 111110 000000000
Q ss_pred eecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEe
Q 001989 402 VAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVK 481 (985)
Q Consensus 402 l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~ 481 (985)
. +..-+.++. ....++.++ +..+|.+|++++.++..++++++++.|+++++++++.++..+.+.|+
T Consensus 351 -----~--~~~~~~~r~-----~~~l~~~~a--l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~ 416 (481)
T 4e1o_A 351 -----M--HWQIPLSRR-----FRSVKLWFV--IRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFR 416 (481)
T ss_dssp -----G--GGSSSSCCC-----CTHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEEE
T ss_pred -----c--cccccCCCC-----ccHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEE
Confidence 0 000011111 112233333 35678899999999999999999999999844999866666777777
Q ss_pred cCC----HHHHHHHHHHcCc-eeeee-c--CCeEEEEeccC-CCHHHHHHHHHHHhC
Q 001989 482 CAD----AHAIASAAYKIEM-NLRVV-D--SNTVTASFDET-TTLEDVDKLFIVFAG 529 (985)
Q Consensus 482 ~~~----~~~v~~~L~~~GI-~~~~~-~--~~~lris~t~~-~t~edId~li~aL~~ 529 (985)
.++ ..++.++|.++|+ .+... . ...+|++++.. +|++||++++++|.+
T Consensus 417 ~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~ 473 (481)
T 4e1o_A 417 LKGPNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRD 473 (481)
T ss_dssp ESSCHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred eCCchHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 643 6789999998885 43322 1 25799998865 589999999999974
No 86
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.84 E-value=1.2e-19 Score=204.00 Aligned_cols=318 Identities=14% Similarity=0.081 Sum_probs=216.2
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCC--CcceeeccchHHHHHHHHHHh
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLP--MSNASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~--~~~~sl~~~~ta~~ea~~~a~ 248 (985)
++.|.+ ..|+.+.+++.+.- .. + +. ....+...++++.+|+++|.+ ..++.+++|+|.+++.++.++
T Consensus 4 ~~~gp~--~~~~~v~~a~~~~~---~~-~-~~----~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~ 72 (353)
T 2yrr_A 4 LTPGPT--PIPERVQKALLRPM---RG-H-LD----PEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANL 72 (353)
T ss_dssp CSSSSC--CCCHHHHGGGGSCC---CC-T-TC----HHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTC
T ss_pred CCCCCC--CCCHHHHHHHhccc---cc-c-cC----HHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHh
Confidence 456643 47777765544322 21 1 11 223466778999999999986 567888899997776655443
Q ss_pred hhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHH
Q 001989 249 NIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGD 317 (985)
Q Consensus 249 ~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~-~t~~V~v~~p-n~~G~v~di~~ 317 (985)
. + |+|++++..|+++ .+...++..|++++.++. +++++ +++ ++++|++++| |.+|.+.|+++
T Consensus 73 --~--~-d~vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~ 145 (353)
T 2yrr_A 73 --D--R-GPVLVLVNGAFSQ--RVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEA 145 (353)
T ss_dssp --S--C-CCEEEEECSHHHH--HHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHH
T ss_pred --c--C-CcEEEEcCCCchH--HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHHH
Confidence 1 3 8899999999986 233333456777777653 45555 655 7899999987 78999999999
Q ss_pred HHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCC
Q 001989 318 FIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSS 395 (985)
Q Consensus 318 I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~ 395 (985)
|.++|+++|+++++| +..+++... +..++|+|++++++ |+++ |+||+|++++++++++.+.. ..+
T Consensus 146 i~~l~~~~~~~li~D-~a~~~~~~~~~~~~~~~d~~~~s~~K~~~-----~~~g~G~~~~~~~~~~~l~~-~~~------ 212 (353)
T 2yrr_A 146 IGALAKEAGALFFLD-AVTTLGMLPFSMRAMGVDYAFTGSQKCLS-----APPGLAPIAASLEARKAFTG-KRG------ 212 (353)
T ss_dssp HHHHHHHHTCEEEEE-CTTTTTTSCCCHHHHTCSEEECCTTSTTC-----CCSSCEEEEECHHHHHHCCC-CSC------
T ss_pred HHHHHHHcCCeEEEE-cCcccccccccccccCceEEEecCccccc-----CCCceEEEEECHHHHHHhcc-CCC------
Confidence 999999999999995 344555332 22457899999998 6674 34567999999998877731 111
Q ss_pred CCcceeeeccc--ccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC
Q 001989 396 GKPALRVAMQT--REQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP 473 (985)
Q Consensus 396 g~~~~~l~l~t--re~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~ 473 (985)
+.+.... ..+..++..+|.|. ....++.+++ ..+..+|++++.++..++++++++.|+++| +++..++
T Consensus 213 ----~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~ 282 (353)
T 2yrr_A 213 ----WYLDLARVAEHWERGGYHHTTPV---LLHYALLEAL--DLVLEEGVAARERRAREVYAWVLEELKARG-FRPYPKA 282 (353)
T ss_dssp ----STTCHHHHHHHHTTCCCSSCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CEESCSS
T ss_pred ----ccccHHHHhhhhhcCCCCCCCCH---HHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHCC-CccccCc
Confidence 1111000 00101222344443 2333333443 444456789999999999999999999986 8887532
Q ss_pred --CcceEEEecC-C--HHHHHHHHHHcCceeeee----cCCeEEEEeccCCCHHHHH-HHHHHHhC
Q 001989 474 --FFDTVKVKCA-D--AHAIASAAYKIEMNLRVV----DSNTVTASFDETTTLEDVD-KLFIVFAG 529 (985)
Q Consensus 474 --~~~~~~~~~~-~--~~~v~~~L~~~GI~~~~~----~~~~lris~t~~~t~edId-~li~aL~~ 529 (985)
....+.+..+ + ..++.+.|.++||.+... .++.+|++++.++|++|++ +++++|++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~ 348 (353)
T 2yrr_A 283 SPLPTVLVVRPPEGVDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDR 348 (353)
T ss_dssp SBCTTEEEEECCTTCCHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHH
Confidence 1223456664 2 889999999999988642 2578999999999999999 99999873
No 87
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.84 E-value=1e-19 Score=208.28 Aligned_cols=297 Identities=13% Similarity=0.047 Sum_probs=207.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 209 RLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 209 ~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
..+.+.++++.+|+++|.++.++.+++|+|.+++.++.++ + ++||+|++++..|+++. +..+++..|++++.++.
T Consensus 40 ~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~-~--~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~ 114 (392)
T 2z9v_A 40 FQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASL-I--SPDDVVLNLASGVYGKG--FGYWAKRYSPHLLEIEV 114 (392)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHH-C--CTTCCEEEEESSHHHHH--HHHHHHHHCSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHh-c--CCCCEEEEecCCcccHH--HHHHHHHcCCceEEeeC
Confidence 4566778999999999998778889999998888777654 2 38899999999999873 22223334667766643
Q ss_pred --------hhhhc-c--CCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEec
Q 001989 289 --------KDIDY-K--SGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGS 355 (985)
Q Consensus 289 --------~~l~~-l--~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s 355 (985)
++|++ + ++++++|++++| |.+|.+.|+++|.++|+++|+++++| +.++.|... ...++|+|++++|
T Consensus 115 ~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-~a~~~g~~~~~~~~~~~d~~~~s 193 (392)
T 2z9v_A 115 PYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVD-AVSSFGGMKTHPEDCKADIYVTG 193 (392)
T ss_dssp CTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEE-CTTTBTTBSCCGGGGTCSEEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEE-cccccCCcccccccccceEEEec
Confidence 45665 6 568999999987 78999999999999999999999995 345555432 2345789999999
Q ss_pred C-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccc--cc-ccccccccCCCccchhHHHHHHH
Q 001989 356 A-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQT--RE-QHIRRDKATSNICTAQALLANMA 431 (985)
Q Consensus 356 ~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~t--re-~~irre~atsni~t~~~l~a~~a 431 (985)
. |+++ |+||+|++++++++++++.....| .|. +.+.+.. .. +..++..+|.|+ ....++.+
T Consensus 194 ~sK~~~-----~~~g~G~l~~~~~~~~~l~~~~~g-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~ 258 (392)
T 2z9v_A 194 PNKCLG-----APPGLTMMGVSERAWAKMKANPLA-----PRA--SMLSIVDWENAWSRDKPFPFTPSV---SEINGLDV 258 (392)
T ss_dssp SSSTTC-----CCSCCEEEEECHHHHHHHHTCTTS-----CCS--STTCSGGGTTTTSTTSCCSSCCCH---HHHHHHHH
T ss_pred Cccccc-----CCCceeEEEECHHHHHHhhhccCC-----CCc--eeccHHHHHhhhcccCCCCCCCCH---HHHHHHHH
Confidence 8 6564 445679999999887655221110 000 1111100 00 111223344444 23333444
Q ss_pred HHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC-CC---CcceEEEecC-C--HHHHHHHHHHc-Cceeeee-
Q 001989 432 AMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG-LP---FFDTVKVKCA-D--AHAIASAAYKI-EMNLRVV- 502 (985)
Q Consensus 432 a~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~~---~~~~~~~~~~-~--~~~v~~~L~~~-GI~~~~~- 502 (985)
++ ..+...|++++.++..++++++++.|+++| +++.. .. ....+.+..+ + ..++.++|.++ ||.+...
T Consensus 259 al--~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~ 335 (392)
T 2z9v_A 259 AL--DLYLNEGPEAVWARHALTAKAMRAGVTAMG-LSVWAASDSIASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGR 335 (392)
T ss_dssp HH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBSSSSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECC
T ss_pred HH--HHHHhccHHHHHHHHHHHHHHHHHHHHHcC-CeeccCCccccCCceEEEECCCCCCHHHHHHHHHhcCCEEEecCC
Confidence 43 444455788999999999999999999886 87764 21 2234566664 2 78899999987 9988643
Q ss_pred ---cCCeEEEEecc-CCCHHHHHHHHHHHhC
Q 001989 503 ---DSNTVTASFDE-TTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ---~~~~lris~t~-~~t~edId~li~aL~~ 529 (985)
.++.+|+++.. ++|++|+++++++|..
T Consensus 336 ~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~ 366 (392)
T 2z9v_A 336 GETLGKLTRIGHMGPTAQPIYAIAALTALGG 366 (392)
T ss_dssp GGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEeCcccccCHHHHHHHHHHHHH
Confidence 25789999755 8999999999999974
No 88
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.84 E-value=3e-20 Score=218.36 Aligned_cols=303 Identities=16% Similarity=0.129 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHhCCCc----cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH---H-----HHHHCC
Q 001989 634 FNNLGEWLCTITGFDS----FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP---A-----TAAMCG 701 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~----~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~---~-----~a~~~G 701 (985)
..++++++++++|.+. ++++++||++|+.++++++. ++||+||+++..|+.|. . .+...|
T Consensus 102 E~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~--------~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g 173 (490)
T 2a7v_A 102 ELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL--------QPHDRIMGLDLPDGGHLTHGYMSDVKRISATS 173 (490)
T ss_dssp HHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC--------CSCEECCC------------------------
T ss_pred HHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHc--------CCCCEecccCccccccccchhhhcchhHHHcC
Confidence 3356699999999987 46778899988866665542 47899999988887642 2 123455
Q ss_pred cE--EEEEcCC-CCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEcccccccc--C-
Q 001989 702 MK--IVSVGTD-AKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV--G- 775 (985)
Q Consensus 702 ~~--vv~v~~d-~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~--~- 775 (985)
.. ++.++++ ++|.+|+++|++++.+ .++++|+++.|++ |... |+++|+++|+++|++||+|++|..++. +
T Consensus 174 ~~~~~~~~~vd~~~~~iD~d~le~~l~~--~~~klIi~~~s~~-~~~~-dl~~i~~ia~~~g~~livD~Ah~~glv~~g~ 249 (490)
T 2a7v_A 174 IFFESMPYKLNPKTGLIDYNQLALTARL--FRPRLIIAGTSAY-ARLI-DYARMREVCDEVKAHLLADMAHISGLVAAKV 249 (490)
T ss_dssp -------CCBCTTTCSBCHHHHHHHHHH--HCCSEEEECCSSC-CSCC-CHHHHHHHHHHTTCEEEEECGGGHHHHHTTS
T ss_pred CeEEEEecccccccCCcCHHHHHHHHhh--cCCcEEEEcCCCC-CCcc-cHHHHHHHHHHcCCEEEEccccccccccCCc
Confidence 43 4444555 4689999999999974 2456777766543 5565 899999999999999999999864432 1
Q ss_pred CCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCC-------CccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 776 LTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS-------HPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 776 l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~-------~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
...|- .++|++++++||+| +||.+|++++++++...-+. .+... .+ . ...+.+.+++.
T Consensus 250 ~~~~~-~~aDiv~~S~hK~l------~Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~~----i~--~-~~~~g~qggp~- 314 (490)
T 2a7v_A 250 IPSPF-KHADIVTTTTHKTL------RGARSGLIFYRKGVKAVDPKTGREIPYTFEDR----IN--F-AVFPSLQGGPH- 314 (490)
T ss_dssp SCCGG-GTCSEEEEESSGGG------CSCSCEEEEEECSEEEEETTTEEEEECCCHHH----HH--H-HHTTTTCCSCC-
T ss_pred CCCCC-CCCCEEEECCcccC------ccccchheeeccchhcccccccchhhHHHHHH----HH--H-HhcccCCCCch-
Confidence 12232 26999999999998 46777999988753210000 00000 00 0 00000100110
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL 927 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L 927 (985)
....++.+.+ +..+..+.++++.++..+++++|++.|++ |+++...+ ...|.+.++++. .+.+..++.+.|
T Consensus 315 ~~~iaAla~A-l~~~~~~~~~~~~~~~~~na~~L~~~L~~~G~~v~~~~---t~t~lv~vdl~~----~g~~~~~~~~~L 386 (490)
T 2a7v_A 315 NHAIAAVAVA-LKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGG---TDNHLVLVDLRP----KGLDGARAERVL 386 (490)
T ss_dssp HHHHHHHHHH-HHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CSSSEEEEECTT----TTCCHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCcEEecCC---CCCeEEEEEeCC----CCCCHHHHHHHH
Confidence 1111122222 23322234577778899999999999987 66664322 123446677652 356788999999
Q ss_pred HHCCCccCCC-----CCC-CCCEEEEecc----CCCCHHHHHHHHccCChhHHHHh
Q 001989 928 MDYGFHGPTM-----SWP-VPGTLMIEPT----ESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 928 ~~~Gi~~~~~-----~~p-~~~~lris~t----~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.+.||.+... ..| +++.||++.+ ...+++|+++ +++.|.+++..
T Consensus 387 ~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~--~~~~i~~~l~~ 440 (490)
T 2a7v_A 387 ELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRR--VVDFIDEGVNI 440 (490)
T ss_dssp HHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHH--HHHHHHHHHHH
T ss_pred HhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHHH--HHHHHHHHHHh
Confidence 9999997531 122 3588999664 3578999999 66777777653
No 89
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.84 E-value=1.9e-20 Score=214.72 Aligned_cols=294 Identities=13% Similarity=0.156 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA 711 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~ 711 (985)
+...++++++++++|.+. .++.++|++|++.++.++ .+++++|+++.+.|+.+...++..|.+++.+|.
T Consensus 88 ~~~~~l~~~la~~~~~~~-~i~~~sGt~a~~~~l~~~--------~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-- 156 (399)
T 3tqx_A 88 TIHKELEKDISEFLGTDD-TILYSSCFDANGGLFETL--------LGPEDAIISDELNHASIIDGIRLCKAQRYRYKN-- 156 (399)
T ss_dssp HHHHHHHHHHHHHHTCSE-EEEESCHHHHHHTTHHHH--------CCTTCEEEEETTCCHHHHHHHHSCCSEEEEECT--
T ss_pred hHHHHHHHHHHHHHCCCc-EEEECchHHHHHHHHHHh--------cCCCCEEEECCcccHHHHHHHHHcCCceeEeCC--
Confidence 456789999999999874 566677887765444332 147789999999998888888899999999986
Q ss_pred CCCCCHHHHHHHHHhcCC---CEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-C--CC----
Q 001989 712 KGNINIEELRKAAEANRD---NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-S--PG---- 780 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~~---~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-~--pg---- 780 (985)
+|+++|++++++..+ ++++|++++| |++|.+. |+++|.++|+++|+++|+|+++..+..+.. . ..
T Consensus 157 ---~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 232 (399)
T 3tqx_A 157 ---NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIA-DLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGV 232 (399)
T ss_dssp ---TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEEC-CHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTC
T ss_pred ---CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcC-CHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCC
Confidence 488899999974322 7999999998 5799998 899999999999999999999853321111 0 00
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
..+.|+++.|+||+|+ |+.+|++++++++.+.+....... ..++.. +...++++.+.+
T Consensus 233 ~~~~di~~~s~sK~~~------g~~gG~~~~~~~~~~~~~~~~~~~----------~~~~~~------~~~~~~~~~~~l 290 (399)
T 3tqx_A 233 ADRVDILTGTLGKALG------GASGGYTSGHKEIIEWLRNRSRPY----------LFSNTV------APVIVATSLKVL 290 (399)
T ss_dssp TTCCSEEEEESSSSSC------SSCCEEEEECHHHHHHHHHHCHHH----------HSSCCC------CHHHHHHHHHHH
T ss_pred CCCCcEEEecchHhcc------cCceEEEEcCHHHHHHHHHhCcce----------eccCCC------cHHHHHHHHHHH
Confidence 1257999999999984 233399999887665442110000 000111 122233334445
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC
Q 001989 861 AMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 861 ~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~ 939 (985)
..+. +++.+..++..++++++.+.|++ ++.+. .+.+.+ +.+.++. +.+..++.++|.++||.+....+
T Consensus 291 ~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~---~~~~~~~-----~~~~~~~~~~l~~~gi~v~~~~~ 359 (399)
T 3tqx_A 291 ELLK-TEGPQLRKQLQENSRYFRAGMEKLGFQLV--PGNHPI---IPVMLGD-----AQLATNMADHLLQEGIYVVGFSY 359 (399)
T ss_dssp HHHH-HTHHHHHHHHHHHHHHHHHHHHHHTCCBC--CCSSSE---EEEEEEC-----HHHHHHHHHHHHHTTEECCEECT
T ss_pred HHHh-hccHHHHHHHHHHHHHHHHHHHHcCCCcC--CCCCCE---EEEEeCC-----HHHHHHHHHHHHHCCCEEeeeCC
Confidence 5443 45667777888999999999987 55553 222322 3344431 23567899999999998764333
Q ss_pred C----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 940 P----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 940 p----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+ ..+++|++++..+|++|+++ +++.|+++++++.
T Consensus 360 ~~~~~~~~~iRi~~~~~~~~~~i~~--~~~~l~~~~~~~~ 397 (399)
T 3tqx_A 360 PVVPMGKARIRVQMSAVHTQQQLDR--AIEAFGQVGKKLG 397 (399)
T ss_dssp TTSCTTCEEEEEECCTTCCHHHHHH--HHHHHHHHHHHTT
T ss_pred CCCCCCCceEEEEeecCCCHHHHHH--HHHHHHHHHHHhc
Confidence 2 13689999999999999999 8899999887653
No 90
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.84 E-value=6.5e-19 Score=207.66 Aligned_cols=358 Identities=10% Similarity=0.011 Sum_probs=226.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCc---cceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHH
Q 001989 139 MKFSKFDEGLTESQMIEHMQKLASMNKV---YKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLN 215 (985)
Q Consensus 139 ~~lp~~~~~~se~e~~~~~~~l~~~n~~---~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e 215 (985)
..+| .++.+-.++++++.++...+.. ...|+|.-.-+...|+.+.+.+.+ .+-..-..| +.+.+..+...+
T Consensus 44 ~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~--~~n~~~~~~--~~~p~~~~lE~~ 117 (475)
T 3k40_A 44 DAAP--EKPEKWQDVMQDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSG--AIACIGFTW--IASPACTELEVV 117 (475)
T ss_dssp SSCC--SSCCCHHHHHHHHHHHTGGGCCCTTCTTBCCSSCCCCCHHHHHHHHHHH--HHCCCSSSC--CCCHHHHHHHHH
T ss_pred CCCC--CCCCCHHHHHHHHHHHHhccCCCCCCcCceeeCCCCCcHHHHHHHHHHH--HhCccccCc--cCCcHHHHHHHH
Confidence 4577 5788999999999987544321 234555443333455555433221 110111112 235566677777
Q ss_pred HHHHHHHhcCCCCc---------ceeeccchHHHHHHHHHHhhhhc-------C---------CCCEEEEcCCCChhHHH
Q 001989 216 FQTMIADLTGLPMS---------NASLLDEGTAAAEAMAMCNNIQK-------G---------KKKTFIIASNCHPQTID 270 (985)
Q Consensus 216 ~q~~ia~L~g~~~~---------~~sl~~~~ta~~ea~~~a~~~~~-------~---------~g~~Vlv~~~~H~s~~~ 270 (985)
...++++++|.+.. .+.+++|||.+...++++.+... + ++++|++++..|+++.+
T Consensus 118 v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~ 197 (475)
T 3k40_A 118 MMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVER 197 (475)
T ss_dssp HHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHH
T ss_pred HHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHHHH
Confidence 88899999999864 47788898876554444332110 1 24689999999999999
Q ss_pred HHHHhhcCCCeEEEEeCc-------hhhhc-cCCC------EeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecC
Q 001989 271 ICITRADGFDIKVVVSDL-------KDIDY-KSGD------VCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDL 335 (985)
Q Consensus 271 ~~~~~a~~~gi~v~~v~~-------~~l~~-l~~~------t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~ 335 (985)
.++. .|++++.++. ++|++ +.++ +.+|+++.+ |.+|.++|+++|+++||++|++++||+ .
T Consensus 198 ~~~~----~g~~~~~v~~d~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~-A 272 (475)
T 3k40_A 198 AGLL----GGVKLRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDA-A 272 (475)
T ss_dssp HHHH----HTCEEEEECCBTTBCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEEC-T
T ss_pred HHHH----cCCceEEEECCCCCcCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeH-H
Confidence 8763 4778887764 35655 5433 677888876 679999999999999999999999954 3
Q ss_pred ccccCCCCC-------CcccceEEEecC-ccccccCCCCCCcEEEEEEchh-hH-hcC---CCceeeeeecCCCCcceee
Q 001989 336 LALTILKPP-------GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQE-YK-RMM---PGRIVGVSIDSSGKPALRV 402 (985)
Q Consensus 336 ~~lg~l~~~-------~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~-~~-~~l---p~~~vG~t~d~~g~~~~~l 402 (985)
++.+.+..+ +--++|.+++++ |+|+.|. ++|+++++++ .+ +.+ ++.+.+ +..+. ..
T Consensus 273 ~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~-----g~g~l~~~~~~~l~~~~~~~~~yl~~---~~~~~---~~ 341 (475)
T 3k40_A 273 YAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNF-----DCSAMWLKDPSWVVNAFNVDPLYLKH---DMQGS---AP 341 (475)
T ss_dssp TGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS-----SCEEEEESSGGGC--------------------------
T ss_pred hHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCC-----ceEEEEEeCHHHHHHHhcCCccccCC---CcCCC---CC
Confidence 343322111 112469999999 6677664 3567888764 32 222 111111 00000 00
Q ss_pred ecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEec
Q 001989 403 AMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKC 482 (985)
Q Consensus 403 ~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 482 (985)
+. . +..-+.++. ....++.++ +..+|.+|++++.++..+++++++++|+++++++++.++..+.+.|+.
T Consensus 342 ~~--~--~~~~~~sr~-----~~~l~l~~a--l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~~iv~f~~ 410 (475)
T 3k40_A 342 DY--R--HWQIPLGRR-----FRALKLWFV--LRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRL 410 (475)
T ss_dssp -----------CCCGG-----GTHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBTTEEEEEE
T ss_pred Cc--c--cccccCCCc-----ccHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEe
Confidence 00 0 000011111 112223333 366788999999999999999999999998449998766667777776
Q ss_pred CC----HHHHHHHHHHcCce-eeee--c-CCeEEEEecc-CCCHHHHHHHHHHHhC
Q 001989 483 AD----AHAIASAAYKIEMN-LRVV--D-SNTVTASFDE-TTTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 ~~----~~~v~~~L~~~GI~-~~~~--~-~~~lris~t~-~~t~edId~li~aL~~ 529 (985)
++ ..++.++|.++|+. +... . ...+|++++. .+|++|||+++++|.+
T Consensus 411 ~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~ 466 (475)
T 3k40_A 411 KGSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSA 466 (475)
T ss_dssp SSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 43 67899999988764 3322 1 3579999875 5689999999999974
No 91
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.84 E-value=2.9e-19 Score=205.09 Aligned_cols=292 Identities=12% Similarity=0.040 Sum_probs=194.6
Q ss_pred HhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-hhcCCCC-EEEEcCCCChhHHHHHHHhhcCCCeE
Q 001989 205 IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQKGKKK-TFIIASNCHPQTIDICITRADGFDIK 282 (985)
Q Consensus 205 ~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~~~~g~-~Vlv~~~~H~s~~~~~~~~a~~~gi~ 282 (985)
...+..+...++++.+++++|.++.++.+++|+|.+++.++.++. +..++|| +|+++...||++...+..+ +..|++
T Consensus 57 ~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~-~~~g~~ 135 (400)
T 3vax_A 57 YGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHL-AGRGFE 135 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHH-HTTTCE
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHH-HhcCCe
Confidence 344556778899999999999998889999999988887776542 1112789 9999999999999888765 457999
Q ss_pred EEEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceE
Q 001989 283 VVVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADI 351 (985)
Q Consensus 283 v~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi 351 (985)
++.++. ++|++ +++++++|++.+| |++|.+.|+++|.++|+++|+++++| +..+.+... ....+ +|+
T Consensus 136 ~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D-~a~~~~~~~~~~~~~-~d~ 213 (400)
T 3vax_A 136 VDFLTPGPSGRISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVD-AAQGYGKVPGDLTTP-IDM 213 (400)
T ss_dssp EEEECCCTTCCCCHHHHHTTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEE-CTTTTTTSGGGGGSC-CSE
T ss_pred EEEEccCCCCCcCHHHHHHhcCCCceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEE-hhhhcCCCCcChhhc-CcE
Confidence 988864 45666 7889999999887 78999999999999999999999995 344554332 12345 999
Q ss_pred EEecCccccccCCCCCCcEEEEE-Echh-hH---hcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHH
Q 001989 352 VVGSAQRFGVPMGYGGPHAAFLA-TSQE-YK---RMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQAL 426 (985)
Q Consensus 352 ~v~s~k~lg~P~~~GGP~~G~l~-~~~~-~~---~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l 426 (985)
+++|.+|+. |++|+|+++ ++++ +. ..+.+.+.|+ .+..+...+|.|+ ...
T Consensus 214 ~~~s~~K~~-----g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~---~~~ 268 (400)
T 3vax_A 214 ISISGHKIG-----APKGVGALVTRRREEMDDERVPLEPIMFGG-----------------GQERKLRPGTLPV---PLI 268 (400)
T ss_dssp EEEETGGGT-----SCSSCEEEEECBCSSSTTCBCCCCCSSCSS-----------------CTGGGTSCSCCCH---HHH
T ss_pred EEEeHHHhC-----CCCceEEEEEecchhccccccccCceecCC-----------------CceeeeecCCCCH---HHH
Confidence 999984453 334578888 8763 21 1222211110 0111223344444 344
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCC---cceEEEecCC--HHHHHHHHHHcCceeee
Q 001989 427 LANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPF---FDTVKVKCAD--AHAIASAAYKIEMNLRV 501 (985)
Q Consensus 427 ~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~---~~~~~~~~~~--~~~v~~~L~~~GI~~~~ 501 (985)
.++.+++ .++ .++++++.++..++++++.+.|+ ..++++..+.. .+.+.+..++ ..++.+.|. +||.++.
T Consensus 269 ~a~~~al--~~~-~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~gi~v~~ 343 (400)
T 3vax_A 269 MGLAEAA--KIF-EAEHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQDHVVPHILNLSFEDVDAEAFLVTLK-DLVAVAT 343 (400)
T ss_dssp HHHHHHH--HHH-HHSHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHH-HHHHHTT
T ss_pred HHHHHHH--HHH-HhhHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCcccCCCCEEEEEeCCCCHHHHHHHHh-cCcEEEe
Confidence 4444444 222 34789999999999999999999 63488874321 2356666665 889999999 9996532
Q ss_pred e-------------------c----CCeEEEEe-ccCCCHHHHHHHHHHHhC
Q 001989 502 V-------------------D----SNTVTASF-DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ~-------------------~----~~~lris~-t~~~t~edId~li~aL~~ 529 (985)
- . .+.+|+++ +..+|++|+++++++|++
T Consensus 344 g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~ 395 (400)
T 3vax_A 344 GSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAK 395 (400)
T ss_dssp TTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC----------------
T ss_pred cccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHH
Confidence 0 0 38899999 999999999999999875
No 92
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.84 E-value=4.3e-20 Score=209.50 Aligned_cols=280 Identities=11% Similarity=0.072 Sum_probs=196.0
Q ss_pred HHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC-CCCC
Q 001989 636 NLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT-DAKG 713 (985)
Q Consensus 636 e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~-d~~g 713 (985)
++++.+++++|.+... ++.++|++++..++.++. .++++|+++.+.|..+...++..|++++.+|+ ++++
T Consensus 69 ~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 140 (365)
T 3get_A 69 ELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKL--------NSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNL 140 (365)
T ss_dssp HHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEECSSCCTHHHHHHHHHTCEEEECSSSSCCH
T ss_pred HHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHHh--------CCCCEEEEeCCChHHHHHHHHHcCCEEEEEecCCCCC
Confidence 7888999999987654 445666666654443321 46789999988887777778889999999998 6678
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHH--HcCCEEEEEccccccc---cCC--CCC----Cc
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIH--DNGGQVYMDGANMNAQ---VGL--TSP----GY 781 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~--~~galliVD~a~~~~~---~~l--~~p----g~ 781 (985)
+|+++|+++++ +++++|++++|+ ++|.+. |++++.++++ ++|+++++|++|.... .+- ..+ ..
T Consensus 141 -~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 215 (365)
T 3get_A 141 -DEFKKLYETHK---DEIKLIFLCLPNNPLGECL-DASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKE 215 (365)
T ss_dssp -HHHHHHHHHTT---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHH
T ss_pred -CCHHHHHHHhC---CCCCEEEEcCCCCCCCCCc-CHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhcc
Confidence 99999999997 899999999995 699998 7888888888 6799999999985221 110 111 12
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~ 861 (985)
.+.++++.|+||+|+. .|.++|++++++++.+.+.... . ..+. +.....++.+++.
T Consensus 216 ~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~------------~--~~~~------~~~~~~~~~~~l~ 271 (365)
T 3get_A 216 FDNVLYLGTFSKLYGL----GGLRIGYGIANANIISAFYKLR------------A--PFNV------SNLALKAAVAAMD 271 (365)
T ss_dssp CTTEEEEEESSSTTSC----TTTCCEEEEECHHHHHHHHHHS------------C--TTCS------CHHHHHHHHHHHT
T ss_pred CCCEEEEeecchHhcC----cchheEEEEcCHHHHHHHHHhc------------C--CCCc------CHHHHHHHHHHhC
Confidence 3567889999999854 3678999999877665442110 0 0011 1122222233333
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-C
Q 001989 862 MMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-W 939 (985)
Q Consensus 862 ~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~ 939 (985)
..+.+.+..++..++++++.+.|++ ++.+ .++.+. + +.+.++. . +..++.+.|.++||.+.... +
T Consensus 272 --~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~--~~~~~~-~--~~~~~~~-----~-~~~~~~~~l~~~gi~v~~g~~~ 338 (365)
T 3get_A 272 --DDEFTEKTLENNFSQMELYKEFAKKHNIKI--IDSYTN-F--ITYFFDE-----K-NSTDLSEKLLKKGIIIRNLKSY 338 (365)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHTTCEE--CCCSSS-E--EEEECSS-----S-CHHHHHHHHHTTTEECEECGGG
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHhCCCEE--CCCCCe-E--EEEECCC-----C-CHHHHHHHHHHCCEEEEECccC
Confidence 2356777777888899999999987 4433 222222 2 4566541 2 78899999999999875432 2
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 940 PVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 940 p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
. .+.+||+++ +++|+++ +++.|++++
T Consensus 339 ~-~~~iRis~~---~~~~i~~--l~~~l~~~l 364 (365)
T 3get_A 339 G-LNAIRITIG---TSYENEK--FFTEFDKIL 364 (365)
T ss_dssp T-CSEEEEECC---CHHHHHH--HHHHHHHHH
T ss_pred C-CCEEEEEcC---CHHHHHH--HHHHHHHHh
Confidence 2 589999985 8999999 777777764
No 93
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.84 E-value=6.8e-20 Score=209.48 Aligned_cols=302 Identities=13% Similarity=0.090 Sum_probs=203.3
Q ss_pred HHHHHHHHHHHHHHhC--CCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEE
Q 001989 631 QEMFNNLGEWLCTITG--FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSV 707 (985)
Q Consensus 631 ~~~~~e~~~~la~l~G--~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v 707 (985)
.++.+++++++++.+| .+... ++.++|++++..++.++. .++++|+++...|..+...++..|++++.+
T Consensus 65 ~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~ 136 (391)
T 3dzz_A 65 AEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFT--------SPGDQILVQEPVYNMFYSVIEGNGRRVISS 136 (391)
T ss_dssp HHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHS--------CTTCEEEECSSCCHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhC--------CCCCeEEECCCCcHHHHHHHHHcCCEEEEe
Confidence 3566788889999888 44444 445666766654444331 467899999988877777788899999999
Q ss_pred cCCC-C--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccc---ccCHHHHHHHHHHcCCEEEEEccccccc-cC--CC
Q 001989 708 GTDA-K--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVY---EEGIDEICKIIHDNGGQVYMDGANMNAQ-VG--LT 777 (985)
Q Consensus 708 ~~d~-~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i---~~di~eI~~la~~~galliVD~a~~~~~-~~--l~ 777 (985)
|+++ + +.+|+++|++++++ +++++|++++| |++|.+ + ++++|+++|+++|+++|+|++|.... .+ ..
T Consensus 137 ~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~i~~p~nptG~~~~~~-~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~ 213 (391)
T 3dzz_A 137 DLIYENSKYSVNWADLEEKLAT--PSVRMMVFCNPHNPIGYAWSEE-EVKRIAELCAKHQVLLISDEIHGDLVLTDEDIT 213 (391)
T ss_dssp CCEEETTEEECCHHHHHHHHTS--TTEEEEEEESSBTTTTBCCCHH-HHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCC
T ss_pred eeeecCCceeecHHHHHHHHhc--cCceEEEEECCCCCCCcccCHH-HHHHHHHHHHHCCCEEEEecccccccCCCCCce
Confidence 9852 2 34999999999963 58999999999 579998 6 79999999999999999999984211 11 11
Q ss_pred CCCccC---Cc--EEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 778 SPGYIG---AD--VCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 778 ~pg~~g---~D--i~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
....++ .| +++.|+||+|+. +|.++|+++++ +++.+.+...... ..+.+.+ ..
T Consensus 214 ~~~~~~~~~~d~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~~~~-----------~~~~~~~------~~ 272 (391)
T 3dzz_A 214 PAFTVDWDAKNWVVSLISPSKTFNL----AALHAACAIIPNPDLRARAEESFFL-----------AGIGEPN------LL 272 (391)
T ss_dssp CGGGSCTTTGGGEEEEECSHHHHTC----TTTCCEEEECCSHHHHHHHHHHHHH-----------HTCSSCC------TT
T ss_pred ehhhcCccccCcEEEEEeChhhccc----cchhheEEEECCHHHHHHHHHHHHh-----------hccCCCC------HH
Confidence 112222 56 889999999954 36789999987 6665443211000 0011111 11
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-H
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-D 929 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~ 929 (985)
...++.+.+.. +.+.+.+..++..++++++.+.|++ ..++.+..+.+..+ +.++++. .+.+..++.++|. +
T Consensus 273 ~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~l~~~ 345 (391)
T 3dzz_A 273 AIPAAIAAYEE-GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYL--AWVDISA----LGMNAEDFCKYLREK 345 (391)
T ss_dssp HHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCBSSE--EEEECGG----GCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCceEE--EEEehhh----cCCCHHHHHHHHHHh
Confidence 22223344443 4555677777888889999999986 22332222222222 3355541 2467889999995 8
Q ss_pred CCCccCCCC-CC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 930 YGFHGPTMS-WP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 930 ~Gi~~~~~~-~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+||.+.... +. ..+.+||+++ ++++||++ +++.|++++++++
T Consensus 346 ~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~--~l~~l~~~l~~~~ 390 (391)
T 3dzz_A 346 TGLIISAGNGYRGNGHEFVRINLA--CPKELVID--GMQRLKQGVLNLN 390 (391)
T ss_dssp HCEECEESGGGCTTGGGEEEEECC--SCHHHHHH--HHHHHHHHHHTCC
T ss_pred CCEEEeCchhhCCCCCCEEEEEec--CCHHHHHH--HHHHHHHHHHHhh
Confidence 899875321 22 2488999998 68999999 8888998887664
No 94
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.83 E-value=1.7e-19 Score=203.62 Aligned_cols=297 Identities=12% Similarity=0.010 Sum_probs=204.2
Q ss_pred hHHHHHHHHHHHHHHhcCCC-CcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 208 GRLESLLNFQTMIADLTGLP-MSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 208 g~l~~i~e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
+..+.+.++++.+++++|.+ ..++.+++|+|.++++++.++. ++ ++++....|.+. .+...++..|++++.+
T Consensus 40 ~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~---~~--~~i~~~~~~~~~--~~~~~~~~~g~~~~~v 112 (362)
T 3ffr_A 40 KFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV---EK--KSFHCVNGSFSK--RFYEFAGELGREAYKE 112 (362)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC---SS--EEEEEECSHHHH--HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc---CC--cEEEEcCcHHHH--HHHHHHHHhCCCeEEE
Confidence 34577888999999999985 4678888999988887777653 14 666555555442 2222244568888887
Q ss_pred Cch--------hhhccCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhC-CcEEEEEecCccccCCCCCCcccceEEEecC
Q 001989 287 DLK--------DIDYKSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHAN-GVKVVMATDLLALTILKPPGELGADIVVGSA 356 (985)
Q Consensus 287 ~~~--------~l~~l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~-galliV~a~~~~lg~l~~~~~~GaDi~v~s~ 356 (985)
+.+ +++ ++++|++|++.+| |++|.+.|+++|+++||++ |+++++|+ ..+.+....+.. .+|++++++
T Consensus 113 ~~~~~~~~d~~~l~-~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~-a~~~~~~~~~~~-~~d~~~~s~ 189 (362)
T 3ffr_A 113 EAAFGKGFYPADIT-VPADAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDA-VSSLPYPKFDWT-KIDSVFFSV 189 (362)
T ss_dssp ECCTTCCCCGGGCC-CCTTCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEEC-TTTTTSSCCCTT-SCSEEEEET
T ss_pred ecCCCCCCCHHHHh-ccCCccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEec-ccccCCcccChh-HCcEEEEec
Confidence 642 333 5778999999987 7899999999999999999 99999953 445554322211 189999998
Q ss_pred -ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccc-c-ccCCCccchhHHHHHHHHH
Q 001989 357 -QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR-D-KATSNICTAQALLANMAAM 433 (985)
Q Consensus 357 -k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irr-e-~atsni~t~~~l~a~~aa~ 433 (985)
|+|++ +||+|++++++++++++.....|. +...+.+++....+..++ . .+|.|. ....++.+++
T Consensus 190 ~K~~~~-----~~G~g~~~~~~~~~~~~~~~~~gg-----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~al 256 (362)
T 3ffr_A 190 QKCFGL-----PAGLGVWILNDRVIEKSKALLAKR-----KSIGTYHTIPSMLEKARVNQTPETPNA---MNIFLLGKVT 256 (362)
T ss_dssp TSTTCC-----CSCCEEEEEEHHHHHHHHHHHHTT-----CCCCSTTSHHHHHHHHTTTCCSSCCCH---HHHHHHHHHH
T ss_pred ccccCC-----CCceEEEEECHHHHHHhhhccccC-----CCCcccccHHHHHHHhhcCCCCCCchH---HHHHHHHHHH
Confidence 77753 356799999998877664332221 112233332111111111 1 233332 3444444443
Q ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC-CC---CcceEEEecCC-HHHHHHHHHHcCceeee----ecC
Q 001989 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG-LP---FFDTVKVKCAD-AHAIASAAYKIEMNLRV----VDS 504 (985)
Q Consensus 434 ~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~~---~~~~~~~~~~~-~~~v~~~L~~~GI~~~~----~~~ 504 (985)
.++..+|++++.++..++++++++.|+++.|++++. .+ ....+.+..++ +.++.+.|.++||.+.. ..+
T Consensus 257 --~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~ 334 (362)
T 3ffr_A 257 --GDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTMLPGEINKILEPFDMAVGAGYGSKKE 334 (362)
T ss_dssp --HHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESSCHHHHHHHHGGGTEEEEECSGGGTT
T ss_pred --HHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCCCHHHHHHHHHHCCeEEecCccccCC
Confidence 455566799999999999999999999993399875 21 12345566664 88999999999998764 235
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 505 NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 505 ~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+|++++..+|+||+++++++|++
T Consensus 335 ~~iRis~~~~~~~e~i~~l~~~l~~ 359 (362)
T 3ffr_A 335 TQIRIANFPAHSLEQVHKLVQTLKE 359 (362)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999999999873
No 95
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.83 E-value=8.1e-20 Score=207.41 Aligned_cols=284 Identities=13% Similarity=0.101 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHhCC-Cccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC
Q 001989 634 FNNLGEWLCTITGF-DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA 711 (985)
Q Consensus 634 ~~e~~~~la~l~G~-~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~ 711 (985)
..++++++++++|. +... ++.++|++++..++. .+ ..++++|+++...|..+...++..|++++.+|+++
T Consensus 69 ~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~---~~-----~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~ 140 (367)
T 3euc_A 69 SEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLAL---AA-----ARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRA 140 (367)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHH---HT-----CCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECCT
T ss_pred HHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHH---HH-----cCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCC
Confidence 34788999999998 4434 444555555543333 32 14678999988888777777888999999999988
Q ss_pred CCCCCHHHHHHHHHhcCC-CEEEEEEEcCC-Cccccc--cCHHHHHHHHHHc--CCEEEEEccccccccC---CCCCCcc
Q 001989 712 KGNINIEELRKAAEANRD-NLSTLMVTYPS-THGVYE--EGIDEICKIIHDN--GGQVYMDGANMNAQVG---LTSPGYI 782 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~~-~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~--galliVD~a~~~~~~~---l~~pg~~ 782 (985)
++.+|+++|+++++ + ++++|++++|+ ++|.+. .++++|+++|+++ |+++++|+++.. +.. ....+..
T Consensus 141 ~~~~d~~~l~~~l~---~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~-~~~~~~~~~~~~~ 216 (367)
T 3euc_A 141 DFTLDRGAMLAAMA---EHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQP-FAQESWMSRLTDF 216 (367)
T ss_dssp TSCCCHHHHHHHHH---HHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCC-SSSCCSGGGGGTC
T ss_pred CCCCCHHHHHHHhh---ccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchh-hcccchHHHHhhC
Confidence 88999999999998 5 78899999985 699884 2588889999999 999999999742 111 1111234
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
+.++++.|+||+ +. +|.++|++++++++.+.+.... .+.+. +.....++.+++..
T Consensus 217 ~~~i~~~s~sK~-~~----~G~r~G~~~~~~~~~~~~~~~~--------------~~~~~------~~~~~~a~~~~l~~ 271 (367)
T 3euc_A 217 GNLLVMRTVSKL-GL----AGIRLGYVAGDPQWLEQLDKVR--------------PPYNV------NVLTEATALFALEH 271 (367)
T ss_dssp TTEEEEEECCCT-TS----CSCCEEEEEECHHHHHHHGGGC--------------CSSCC------CHHHHHHHHHHHTT
T ss_pred CCEEEEecchhh-cc----cccCceeeeeCHHHHHHHHHhC--------------CCCCC------CHHHHHHHHHHhcC
Confidence 556888899998 43 4678999999877655442110 01111 12222333344443
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC---
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW--- 939 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~--- 939 (985)
.+.+.+..++..++++++.+.|++..++...++.+. + +.+.++ +..++.+.|.++||.+.....
T Consensus 272 --~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~-~--~~~~~~--------~~~~l~~~l~~~gi~v~~~~~~~~ 338 (367)
T 3euc_A 272 --VAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPSAAN-F--LLARVP--------DAAQTFDRLLARKVLIKNVSKMHP 338 (367)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCCSSS-E--EEEECS--------CHHHHHHHHHTTTEECEECGGGCG
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCe-E--EEEECC--------CHHHHHHHHHHCCeEEEECCccCC
Confidence 455677777888899999999986323322222222 2 234442 578899999999998754221
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 940 PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 940 p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
...+++||+++ |++|+|+ ++++|+++++
T Consensus 339 ~~~~~iRis~~---~~~~i~~--~~~~l~~~l~ 366 (367)
T 3euc_A 339 LLANCLRVTVS---TPEENAQ--FLEAFAASLQ 366 (367)
T ss_dssp GGTTEEEEECC---CHHHHHH--HHHHHHHHTC
T ss_pred CCCCEEEEecC---CHHHHHH--HHHHHHHHhc
Confidence 13589999985 9999999 7777777653
No 96
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.83 E-value=6e-19 Score=201.93 Aligned_cols=319 Identities=15% Similarity=0.091 Sum_probs=215.2
Q ss_pred CCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCc-ceeeccchHHHHHHHHHHhhhhcCCCC
Q 001989 178 THVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMS-NASLLDEGTAAAEAMAMCNNIQKGKKK 256 (985)
Q Consensus 178 ~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~-~~sl~~~~ta~~ea~~~a~~~~~~~g~ 256 (985)
...|+.+.+++.+.- .. .|.+ ...+.+.++++.+++++|.+.. ++.+++|+|.+++.++.++ . ++||
T Consensus 28 ~~~~~~v~~a~~~~~---~~--~~~~----~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~--~~gd 95 (393)
T 2huf_A 28 SNAPQRVLDAMSRPI---LG--HLHP----ETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNL-L--EDGD 95 (393)
T ss_dssp CCCCHHHHHHTTSCC---CC--TTSH----HHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHH-C--CTTC
T ss_pred CCCCHHHHHHHHhhh---cc--CCCH----HHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHH-h--CCCC
Confidence 347777765544321 11 1222 2346677899999999999875 7888899998888777665 2 3889
Q ss_pred EEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHhC
Q 001989 257 TFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHAN 325 (985)
Q Consensus 257 ~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~-~t~~V~v~~p-n~~G~v~di~~I~~~a~~~ 325 (985)
+|+++...|+++. +...++..|++++.++. +++++ +++ ++++|++++| |.+|.+.|+++|.++|+++
T Consensus 96 ~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~ 173 (393)
T 2huf_A 96 VILIGHTGHWGDR--SADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQH 173 (393)
T ss_dssp EEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHT
T ss_pred EEEEECCCcchHH--HHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHHHHHHHHHc
Confidence 9999999998853 22223446888877753 45555 666 7899999987 7899999999999999999
Q ss_pred CcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeee
Q 001989 326 GVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVA 403 (985)
Q Consensus 326 galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~ 403 (985)
|+++++|. .++++... ...++|+|+++++. |+|++ +||.|++++++++.+.+.....+ ...|.+.
T Consensus 174 ~~~li~D~-a~~~~~~~~~~~~~~~d~~~~s~sK~l~g-----~~G~G~~~~~~~~~~~~~~~~~~-------~~~~~~~ 240 (393)
T 2huf_A 174 NCLLIVDT-VASLGGAPMFMDRWEIDAMYTGSQKVLGA-----PPGITPVSFSHRAVERYKRRNTK-------VKVYYWD 240 (393)
T ss_dssp TCEEEEEC-TTTBTTBCCCTTTTTCSEEECCSSSTTCC-----CSSCEEEEECHHHHHHHHTCSSC-------CSCGGGC
T ss_pred CCEEEEEc-ccccCCCCcchhhcCccEEEECCCccccc-----CCCeEEEEECHHHHHHHhhcCCC-------CceEEEc
Confidence 99999953 44555332 23567899999998 76753 35678999998887665211000 0001111
Q ss_pred c------ccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC--Cc
Q 001989 404 M------QTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP--FF 475 (985)
Q Consensus 404 l------~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~--~~ 475 (985)
. ....+..+...+|+|+ ....++.+++ .++..+|++++.++..++++++.+.|+++| +++..+. ..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~ 314 (393)
T 2huf_A 241 MSLVGDYWGCFGRPRIYHHTISS---TLLYGLREAI--AMACEEGLPALIARHEDCAKRLYRGLQDAG-FELYADPKDRL 314 (393)
T ss_dssp HHHHHHHTTCSSSCCCCSCCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBSSCGGGBC
T ss_pred hHHHHhhhccccccCCCCCCCCH---HHHHHHHHHH--HHHHHhCHHHHHHHHHHHHHHHHHHHHHcC-CeeccCccccC
Confidence 0 0001112223345554 3333444443 444445789999999999999999999986 8776432 12
Q ss_pred c-eEEEecC-C--HHHHHHHHHHc-Cceeeee----cCCeEEEEeccC-CCHHHHHHHHHHHhC
Q 001989 476 D-TVKVKCA-D--AHAIASAAYKI-EMNLRVV----DSNTVTASFDET-TTLEDVDKLFIVFAG 529 (985)
Q Consensus 476 ~-~~~~~~~-~--~~~v~~~L~~~-GI~~~~~----~~~~lris~t~~-~t~edId~li~aL~~ 529 (985)
. .+.+..+ + ..++.++|.++ ||.+... ..+.+|++++.+ ++++|+++++++|..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~ 378 (393)
T 2huf_A 315 STVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQE 378 (393)
T ss_dssp TTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHH
Confidence 2 4556664 3 78899999865 9988642 357899999554 579999999999974
No 97
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.83 E-value=4.1e-20 Score=210.06 Aligned_cols=304 Identities=10% Similarity=0.023 Sum_probs=197.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCCc-c-cee-cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH--HHHCCc
Q 001989 628 QGYQEMFNNLGEWLCTITGFDS-F-SLQ-PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT--AAMCGM 702 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~-~-~~~-~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~--a~~~G~ 702 (985)
+.+.++++++++.+++++|.+. . .++ .++|++++ .+++.++.. . .++|++++....|-+++.. ++..|+
T Consensus 54 ~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~---n~a~~~l~~-~--~~Gd~v~~~~~g~~~~~~~~~a~~~G~ 127 (377)
T 3e77_A 54 SDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQF---SAVPLNLIG-L--KAGRCADYVVTGAWSAKAAEEAKKFGT 127 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH---HHHHHHHGG-G--STTCEEEECCCSHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHH---HHHHHhccC-C--CCCCeEEEEECCHHHHHHHHHHHHhCC
Confidence 4567889999999999999975 2 344 35566655 444444421 1 1368887765544444433 456788
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCc
Q 001989 703 KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY 781 (985)
Q Consensus 703 ~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~ 781 (985)
+++.+++++++..++++++.+++ ++|++|++++. |.+|++. |+ +|+++|++++||++|.++...+ +..+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~i~---~~t~lV~~~h~et~tG~~~-pi-----i~~~~~~~~~vD~~q~~g~~~i-d~~~ 197 (377)
T 3e77_A 128 INIVHPKLGSYTKIPDPSTWNLN---PDASYVYYCANETVHGVEF-DF-----IPDVKGAVLVCDMSSNFLSKPV-DVSK 197 (377)
T ss_dssp EEECSCCCSSSCSCCCGGGCCCC---TTCSCEEEESEETTTTEEC-SS-----CCCCTTCCEEEECTTTTTSSCC-CGGG
T ss_pred ceEEeccCCCcCCCCChHHhccC---CCccEEEEeCccCchheEc-hh-----hhccCCCEEEEEcccccCCCCC-chhh
Confidence 88888887777778887776665 78999988875 5689999 77 4778999999999997554433 3445
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC---CCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI---PAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~---~~~~~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
++ ++++++||++ |+||+|++++++++.+.+++..... .+. ........|+++. +. .++ .+
T Consensus 198 ~~--~~~~s~~K~~------gp~G~g~l~~~~~~l~~~~~~~p~~-~~~~~~~~~~~~~~Tp~v~----~i-~~l---~~ 260 (377)
T 3e77_A 198 FG--VIFAGAQKNV------GSAGVTVVIVRDDLLGFALRECPSV-LEYKVQAGNSSLYNTPPCF----SI-YVM---GL 260 (377)
T ss_dssp CS--EEEEEGGGTT------SCTTCEEEEEETTSCSCCCTTSCGG-GCHHHHHTTTTCSSCCCHH----HH-HHH---HH
T ss_pred cC--EEEEeccccc------CCCccEEEEEcHHHHhhccCCCCch-hhHHHHhhcCCCCCCchHH----HH-HHH---HH
Confidence 54 6889999998 3468999999988776554321110 000 0001112233322 11 112 24
Q ss_pred HHHHhcHH-HHHHHHHHHHHHHHHHHHHhhccCCee-ecCCCCcee-eEEEEEecCccccCCCCH-----HHHHHHHHHC
Q 001989 859 YIAMMGSK-GLTEASKIAILNANYMAKRLEKHYPIL-FRGVNGTVA-HEFIVDLRGLKNTAGIEP-----EDVAKRLMDY 930 (985)
Q Consensus 859 ~l~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~g~~l~-~~~~~~~~~-~~~iv~~~~~~~~~g~~~-----~~v~~~L~~~ 930 (985)
.++.+..+ |+.++.++..+++++++++|++..++. ...+..... ..+.+.++ ++++ ..+.+.|.++
T Consensus 261 al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~------~~~~~~~~~~~~l~~l~~~ 334 (377)
T 3e77_A 261 VLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIG------NAKGDDALEKRFLDKALEL 334 (377)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEES------STTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcC------CCCCchhHHHHHHHHHHHC
Confidence 45555566 788888999999999999998732232 111111111 12445554 3322 3567778889
Q ss_pred CCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 931 GFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 931 Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
||.+..-. ...+++|+|+..++|+||||+ +++.|+++.++
T Consensus 335 Gi~~~~g~-~~~g~iRiS~~~~~t~edId~--l~~al~~~~~~ 374 (377)
T 3e77_A 335 NMLSLKGH-RSVGGIRASLYNAVTIEDVQK--LAAFMKKFLEM 374 (377)
T ss_dssp TEESCBCC-TTTCSEEEECCTTSCHHHHHH--HHHHHHHHHHH
T ss_pred CcEEeCCC-CcCCEEEEECCCCCCHHHHHH--HHHHHHHHHHH
Confidence 99874321 123679999999999999999 78888888765
No 98
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.83 E-value=1.2e-19 Score=206.24 Aligned_cols=309 Identities=12% Similarity=0.002 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
..++++.+++++|.+ ..++.++|++|+..++.+++. . .+++++|+++...|..+...+...|++++.+++++++
T Consensus 34 ~~~l~~~la~~~~~~-~v~~~~ggt~al~~~~~~~~~----~-~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 107 (375)
T 2fnu_A 34 SLLFEEALCEFLGVK-HALVFNSATSALLTLYRNFSE----F-SADRNEIITTPISFVATANMLLESGYTPVFAGIKNDG 107 (375)
T ss_dssp HHHHHHHHHHHHTCS-EEEEESCHHHHHHHHHHHSSC----C-CTTSCEEEECSSSCTHHHHHHHHTTCEEEECCBCTTS
T ss_pred HHHHHHHHHHHhCCC-eEEEeCCHHHHHHHHHHHhcc----c-CCCCCEEEECCCccHhHHHHHHHCCCEEEEeccCCCC
Confidence 558889999999987 345667788777555544310 0 1367899999998888887788899999999998888
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-CCCccC-CcEEEeCC
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-SPGYIG-ADVCHLNL 791 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-~pg~~g-~Di~~~s~ 791 (985)
.+|+++|+++++ +++++|++++| +|.+. |+++|.++|+++|+++|+|++|..+..... ..+.++ +++.+++.
T Consensus 108 ~~d~~~l~~~i~---~~~~~v~~~~~--tG~~~-~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s~ 181 (375)
T 2fnu_A 108 NIDELALEKLIN---ERTKAIVSVDY--AGKSV-EVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHA 181 (375)
T ss_dssp SBCGGGSGGGCC---TTEEEEEEECG--GGCCC-CHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCT
T ss_pred CCCHHHHHhhcC---cCceEEEEeCC--cCCcc-CHHHHHHHHHHcCCEEEEECccccCCeECCeeccccCCeEEEeCCC
Confidence 899999999987 78999888887 89998 899999999999999999999864321111 123333 33445555
Q ss_pred cccccccCCCCCCceEEEEE-c-ccccCcCCCC-ccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHH
Q 001989 792 HKTFCIPHGGGGPGMGPIGV-K-KHLAPFLPSH-PVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 792 hK~l~~p~g~GGPg~G~i~~-~-~~l~~~lp~~-~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl 868 (985)
||+|+ ||.|++++ + +++.+.+... ..+.. +...+..+..+.+.. +......+ +.+. ...+++
T Consensus 182 ~K~~~-------~g~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~--a~~~---~~~~~~ 246 (375)
T 2fnu_A 182 IKPIT-------TAEGGAVVTNDSELHEKMKLFRSHGML-KKDFFEGEVKSIGHN--FRLNEIQS--ALGL---SQLKKA 246 (375)
T ss_dssp TSSSC-------CSSCEEEEESCHHHHHHHHHHTBTTEE-ESSSSCEEESSCCCB--CCCCHHHH--HHHH---HHHTTH
T ss_pred CCCcc-------ccCceEEEeCCHHHHHHHHHHHhcCCc-ccccccccccccccc--CCCCHHHH--HHHH---HHHHHH
Confidence 69873 24666666 3 4443322110 00100 000000000011110 00011111 1111 123566
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCeeecCC--C-CceeeEEEEEecCccccCCC-CHHHHHHHHHHCCCccCCCCCC----
Q 001989 869 TEASKIAILNANYMAKRLEKHYPILFRGV--N-GTVAHEFIVDLRGLKNTAGI-EPEDVAKRLMDYGFHGPTMSWP---- 940 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g~~l~~~~~--~-~~~~~~~iv~~~~~~~~~g~-~~~~v~~~L~~~Gi~~~~~~~p---- 940 (985)
.+..++..++++++.+.|++..++.+.++ . ....+.+.+.++. .+. +..++.+.|.++||.+.....|
T Consensus 247 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~L~~~gi~v~~~~~p~~~~ 322 (375)
T 2fnu_A 247 PFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQ----KFFTCKKLILESLHKRGILAQVHYKPIYQY 322 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECG----GGGGGHHHHHHHHHHTTEECBCCCCCGGGS
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCc----cccchHHHHHHHHHHCCCCccccccccccc
Confidence 77777888899999999987323322221 0 1112223455541 123 5788999999999987621112
Q ss_pred -----------C-------CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 941 -----------V-------PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 941 -----------~-------~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
. .+.+||+++..+|++||++ +++.|++++++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~--~~~~l~~~~~~~~ 373 (375)
T 2fnu_A 323 QLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQN--IAHSVLKTFESFK 373 (375)
T ss_dssp HHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHH--HHHHHHHHHHHHC
T ss_pred hhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHH--HHHHHHHHHHHhc
Confidence 1 1679999999999999999 8899999887764
No 99
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.83 E-value=3.7e-19 Score=205.31 Aligned_cols=302 Identities=17% Similarity=0.129 Sum_probs=196.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH---HHHH--CCcE
Q 001989 629 GYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA---TAAM--CGMK 703 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~---~a~~--~G~~ 703 (985)
...++.+.+++++++++|.+...+++++|++|++.++.++. .++|+|++++..|+.+.. .... .++.
T Consensus 68 ~~~~~~~~~~~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~ 139 (417)
T 3n0l_A 68 FVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYAALI--------NPGDKILGMDLSHGGHLTHGAKVSSSGKMYE 139 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHS--------CTTCEEEEECC----------------CCSE
T ss_pred HHHHHHHHHHHHHHHHhCCCCcceEeccHHHHHHHHHHHhc--------CCCCEEEecccccccccchhhhhhhhcceee
Confidence 34455556778999999998776777888877765554431 478999998887765433 2222 4567
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-CCCc-
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-SPGY- 781 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-~pg~- 781 (985)
++.++++.++.+|+++|++++++ +++++|++++|++ |.+. |+++|.++|+++|+++|+|++|..+..... .+..
T Consensus 140 ~~~~~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~-G~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~ 215 (417)
T 3n0l_A 140 SCFYGVELDGRIDYEKVREIAKK--EKPKLIVCGASAY-ARVI-DFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPF 215 (417)
T ss_dssp EEEECCCTTSSCCHHHHHHHHHH--HCCSEEEECCSSC-CSCC-CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCT
T ss_pred eEeccCCCCCCcCHHHHHHHHHh--cCCeEEEECCccc-CccC-CHHHHHHHHHHcCCEEEEECccchhhhhcccCCCcc
Confidence 77788887788999999999973 3678888888874 8887 899999999999999999999753322100 1111
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
.++|++++|+||+| +||.+|+++++ +++.+.+...... ..+++. ....+++..+.+
T Consensus 216 ~~~di~~~s~sK~l------~g~~~G~~~~~~~~~~~~~~~~~~~-----------~~~~~~------~~~~~aa~~~a~ 272 (417)
T 3n0l_A 216 PYAHVVSSTTHKTL------RGPRGGIIMTNDEELAKKINSAIFP-----------GIQGGP------LMHVIAAKAVGF 272 (417)
T ss_dssp TTCSEEEEESSTTT------CSCSCEEEEESCHHHHHHHHHHHTT-----------TTCSSC------CHHHHHHHHHHH
T ss_pred ccceEEEeeCcccc------CCCCeeEEEECCHHHHHHHhhhhCC-----------cccCCc------HHHHHHHHHHHH
Confidence 14799999999988 35667999988 4555433211000 000111 111122223344
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC
Q 001989 861 AMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 861 ~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~ 939 (985)
.....+++.+..++..++++++.+.|++ ++.+...+ ...+.+.+.++. .+.+..++.+.|.++||.+.....
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~l~~~gi~v~~~~~ 345 (417)
T 3n0l_A 273 KFNLSDEWKVYAKQVRTNAQVLANVLMDRKFKLVSDG---TDNHLVLMSFLD----REFSGKDADLALGNAGITANKNTV 345 (417)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CSSSEEEEECTT----SSSCHHHHHHHHHHTTEECEECCC
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhCCceeccCC---CCceEEEEEccc----CCCCHHHHHHHHHHcCeEEecccc
Confidence 4444456777788888999999999987 44443211 122234566542 245788999999999998753221
Q ss_pred C-------CCCEEEEeccC----CCCHHHHHHHHccCChhHHHHhh
Q 001989 940 P-------VPGTLMIEPTE----SESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 940 p-------~~~~lris~t~----~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
| ..+.+|++++. ..+++||++ +++.|+++++..
T Consensus 346 ~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~--~~~~l~~~l~~~ 389 (417)
T 3n0l_A 346 PGEIRSPFITSGLRLGTPALTARGFKEKEMEI--VSNYIADILDDV 389 (417)
T ss_dssp TTCCSCTTTCSEEEEECHHHHHTTCCHHHHHH--HHHHHHHHHHTT
T ss_pred CCCCcccCCCCeeEecCHHHhhCCCCHHHHHH--HHHHHHHHHhcc
Confidence 1 23679998764 367999999 778888887653
No 100
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.83 E-value=3.7e-19 Score=203.73 Aligned_cols=299 Identities=15% Similarity=0.123 Sum_probs=194.7
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--ccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--SFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+++.+++.+..|.+ ...+ +.++|++|+..++ +.+. .++|+|+++.+.|..+...++..|+++
T Consensus 68 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~---~~l~-----~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 139 (385)
T 1b5p_A 68 AGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLF---QAIL-----DPGDEVIVLSPYWVSYPEMVRFAGGVV 139 (385)
T ss_dssp TCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHH---HHHC-----CTTCEEEEEESCCTHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHH---HHhc-----CCCCEEEEcCCCchhHHHHHHHcCCEE
Confidence 455566666666666666753 3344 4455566654333 3321 478899999888877777788899999
Q ss_pred EEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC-CC
Q 001989 705 VSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG-LT 777 (985)
Q Consensus 705 v~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~-l~ 777 (985)
+.+|+++ ++.+|+++|+++++ +++++|++++| |++|.+. .++++|+++|+++|+++++|+++.... .+ ..
T Consensus 140 ~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~ 216 (385)
T 1b5p_A 140 VEVETLPEEGFVPDPERVRRAIT---PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHF 216 (385)
T ss_dssp EEEECCGGGTTCCCHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCC
T ss_pred EEeecCcccCCCCCHHHHHHhcC---CCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCC
Confidence 9999975 46799999999987 68999999999 4699984 259999999999999999999985311 11 11
Q ss_pred CCCcc--CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHH
Q 001989 778 SPGYI--GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 778 ~pg~~--g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~ 855 (985)
....+ +.++++.|++|+|+.| |.++|++++++++.+.+.... ...+.+.+ .....+
T Consensus 217 ~~~~~~~~~~i~~~s~SK~~~~~----G~RiG~~~~~~~~~~~l~~~~------------~~~~~~~~------~~~~~a 274 (385)
T 1b5p_A 217 SPGRVAPEHTLTVNGAAKAFAMT----GWRIGYACGPKEVIKAMASVS------------RQSTTSPD------TIAQWA 274 (385)
T ss_dssp CGGGTCTTTEEEEEESTTTTTCG----GGCCEEEECCHHHHHHHHHHH------------HTTTCSCC------HHHHHH
T ss_pred CHHHcCCCCEEEEEechhhcCCc----ccceEEEEeCHHHHHHHHHHH------------hhccCCCC------HHHHHH
Confidence 11222 4578899999998543 456999999876654332100 00111211 111112
Q ss_pred HHHHHHH--hcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 856 SYTYIAM--MGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 856 a~a~l~~--lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
+.++|.. .+.+.+++..++..++++++.+.|++ ++.+. .+.+.++ +.+.++. .+.+..++.+.|.++||
T Consensus 275 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~--~~~~~~~----~~~~~~~l~~~l~~~gv 346 (385)
T 1b5p_A 275 TLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAV--RPSGAFY--VLMDTSP----IAPDEVRAAERLLEAGV 346 (385)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBC--CCSBTTE--EEEECTT----TCSSHHHHHHHHHHTTE
T ss_pred HHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeec--CCCeeEE--EEEecCC----CCCCHHHHHHHHHHCCe
Confidence 2233322 13344666667778888999999987 44432 2222222 2344431 14578899999999999
Q ss_pred ccCC-CCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 933 HGPT-MSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 933 ~~~~-~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
.+.. ..++.++++||++. +++++|++ .++.|++++
T Consensus 347 ~v~~g~~f~~~~~iRis~~--~~~~~i~~--~l~~l~~~l 382 (385)
T 1b5p_A 347 AVVPGTDFAAFGHVRLSYA--TSEENLRK--ALERFARVL 382 (385)
T ss_dssp ECEESGGGTCTTEEEEECC--SCHHHHHH--HHHHGGGGC
T ss_pred EEecccccCCCCeEEEEec--CCHHHHHH--HHHHHHHHH
Confidence 8653 23333589999987 78999998 666666554
No 101
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.83 E-value=4.8e-19 Score=200.50 Aligned_cols=314 Identities=11% Similarity=0.015 Sum_probs=207.5
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCcccccc--CCChh----hHhhhHHHHHHHHHHHHHHhcCCCC-cceee-ccchHHHHH
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQY--TPYQA----EIAQGRLESLLNFQTMIADLTGLPM-SNASL-LDEGTAAAE 242 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~--~pyq~----e~sqg~l~~i~e~q~~ia~L~g~~~-~~~sl-~~~~ta~~e 242 (985)
+++| |..+|+.|.+++..- +..| +|... ..++...+.+.++++.+++|+|++. .++.+ +.|+|.+++
T Consensus 9 f~pg--pt~~~~~V~~a~~~~---~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n 83 (361)
T 3m5u_A 9 FSAG--PSTLPLEILEQAQKE---LCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFA 83 (361)
T ss_dssp CCSS--SCCCCHHHHHHHHHT---SSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHH
T ss_pred ecCC--CCCCcHHHHHHHHHH---HHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHH
Confidence 4566 556888887665542 2222 22111 1234557899999999999999974 46776 888998877
Q ss_pred HHHHHhhhhcCCCCEE--EEc-CCCChhHHHHHHHhhcCCCeEEEEeCchh-------h--hccCCCEeEEEEEcC-CCC
Q 001989 243 AMAMCNNIQKGKKKTF--IIA-SNCHPQTIDICITRADGFDIKVVVSDLKD-------I--DYKSGDVCGVLVQYP-GTE 309 (985)
Q Consensus 243 a~~~a~~~~~~~g~~V--lv~-~~~H~s~~~~~~~~a~~~gi~v~~v~~~~-------l--~~l~~~t~~V~v~~p-n~~ 309 (985)
+++..+. ++|++ +++ ...|+ |...++..|+++++++.+. . + ++++|++|.+++. |.+
T Consensus 84 ~~~~~~~----~~~~~~~i~~~~~~~~-----~~~~a~~~G~~v~~~~~~~~g~~~~~~~~~-l~~~t~lv~~~~~e~~t 153 (361)
T 3m5u_A 84 MIPMNLA----LNGVCEYANTGVWTKK-----AIKEAQILGVNVKTVASSEESNFDHIPRVE-FSDNADYAYICSNNTIY 153 (361)
T ss_dssp HHHHHHC----CSSCEEEEECSHHHHH-----HHHHHHHTTCCEEEEEECTTTTSCSCCCCC-CCTTSSEEEEESEETTT
T ss_pred HHHHhcC----CCCeEEEEeCCHHHHH-----HHHHHHHcCCceEEEecccCcCCCcCChhh-cCCCCCEEEEeCCCCCc
Confidence 7766542 44543 333 23332 2233445677777765421 1 2 6778999988864 889
Q ss_pred eeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCcee
Q 001989 310 GEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIV 388 (985)
Q Consensus 310 G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~v 388 (985)
|++.|. | ++ +|++++||+ ..++|.+. +.. ++|++++++||+.+| ||+|++++++++++.+++...
T Consensus 154 G~~~~~--i---~~-~~~~~~vD~-~q~~g~~~id~~--~~d~~~~s~~K~~gp-----~G~g~l~~~~~~~~~~~~~~~ 219 (361)
T 3m5u_A 154 GTQYQN--Y---PK-TKTPLIVDA-SSDFFSRKVDFS--NIALFYGGVQKNAGI-----SGLSCIFIRKDMLERSKNKQI 219 (361)
T ss_dssp TEECSS--C---CC-CSSCEEEEC-GGGTTSSCCCCT--TEEEEEEETTTTSSC-----TTCEEEEEEHHHHHHHHTCCC
T ss_pred ceeCCc--c---cc-cCCEEEEEc-ccccCCCCCCcc--cCCEEEEechhccCC-----CccEEEEEcHHHHhhhcCCCC
Confidence 998662 3 33 499999964 44666543 223 479999999555235 578999999998877644211
Q ss_pred eeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHHHHHHhcCCCe
Q 001989 389 GVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 389 G~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g~~ 467 (985)
. ..+++....+ .....+|+|+ .+++++.+++ .++..+ |++++.++..+++++++++|+++|++
T Consensus 220 p----------~~~~~~~~~~-~~~~~~Tp~v---~~i~~l~~al--~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~ 283 (361)
T 3m5u_A 220 P----------SMLNYLTHAE-NQSLFNTPPT---FAIYMFNLEM--DWLLNQGGLDKVHEKNSQKATMLYECIDLSNGF 283 (361)
T ss_dssp C----------GGGCHHHHHH-TTTCSSCCCH---HHHHHHHHHH--HHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTS
T ss_pred C----------ceeehHHHhh-cCCCCCCccH---HHHHHHHHHH--HHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 1 0111110100 1122378887 6777888876 666677 89999999999999999999999755
Q ss_pred -EEcCCC--Cc-ceEEEecCC----HHHHHHHHHHcCceeeee--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 468 -EVQGLP--FF-DTVKVKCAD----AHAIASAAYKIEMNLRVV--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 468 -~~~~~~--~~-~~~~~~~~~----~~~v~~~L~~~GI~~~~~--~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+++.++ .. ..++|.+++ ..++.+.|.++||.++.- ..+.+|+|++.+||+||||+|+++|++
T Consensus 284 ~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~ 355 (361)
T 3m5u_A 284 YKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKE 355 (361)
T ss_dssp EEESSCGGGBCSSEEEEEESSCTTHHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eeccCCHHHcCCeEEEEECCCchhhhHHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHH
Confidence 664321 22 246676653 347888999999987532 126799999999999999999999974
No 102
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.82 E-value=2.1e-19 Score=205.62 Aligned_cols=302 Identities=17% Similarity=0.164 Sum_probs=199.5
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cc-c-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DS-F-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~-~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+++.+++.+.+|. +. . .++.++|++|+..++.++ ..++++|++++..|..+...++..|++
T Consensus 63 ~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~--------~~~gd~vl~~~~~~~~~~~~~~~~g~~ 134 (389)
T 1gd9_A 63 IGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAF--------LKDGEEVLIPTPAFVSYAPAVILAGGK 134 (389)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTT--------CCTTCEEEEEESCCTTHHHHHHHHTCE
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHh--------CCCCCEEEEcCCCchhHHHHHHHCCCE
Confidence 45555566666666666684 33 3 345566777665444332 136789999888888887778889999
Q ss_pred EEEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEcccccccc-C--
Q 001989 704 IVSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQV-G-- 775 (985)
Q Consensus 704 vv~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~~~-~-- 775 (985)
++.+|.++ ++.+|+++|+++++ +++++|++++|+ ++|.+.+ ++++|+++|+++|+++++|+++..... +
T Consensus 135 ~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~ 211 (389)
T 1gd9_A 135 PVEVPTYEEDEFRLNVDELKKYVT---DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDAR 211 (389)
T ss_dssp EEEEECCGGGTTCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCC
T ss_pred EEEeccCCccCCCCCHHHHHHhcC---cCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCC
Confidence 99999875 35789999999997 689999999985 6898852 599999999999999999999853211 1
Q ss_pred CCCCC----ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 776 LTSPG----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 776 l~~pg----~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
..... ..+.|+++.|+||+|+.| |.++|++++++++.+.+..... ..+.+. + ..
T Consensus 212 ~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~~~~~------------~~~~~~--~----~~ 269 (389)
T 1gd9_A 212 HYSIASLDGMFERTITVNGFSKTFAMT----GWRLGFVAAPSWIIERMVKFQM------------YNATCP--V----TF 269 (389)
T ss_dssp CCCGGGSTTCGGGEEEEEESTTTTTCG----GGCCEEEECCHHHHHHHHHHHT------------TTTCSC--C----HH
T ss_pred CCCHhhccCCCCCEEEEecChhhcCCc----ccceEEEEECHHHHHHHHHHHh------------hhccCC--C----HH
Confidence 00111 145689999999998532 4568999998766544321100 001111 1 11
Q ss_pred HHHHHHHHHHHhcHH--HHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH
Q 001989 852 ILPISYTYIAMMGSK--GLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 852 ~~~~a~a~l~~lg~e--Gl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~ 928 (985)
...++.++|.. +.+ .+.+..++..++++++.+.|++ ++.+. .+.+..+ +.+.++. .+.+..++.++|.
T Consensus 270 ~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~--~~~~~~~----~~~~~~~~~~~l~ 340 (389)
T 1gd9_A 270 IQYAAAKALKD-ERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTV--KPKGAFY--IFPRIRD----TGLTSKKFSELML 340 (389)
T ss_dssp HHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC--CCCBTTE--ECCBCGG----GTCCHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcchHHHHHHHHHHHHHHHHHHHHHHcCCeec--CCCeeeE--EEEeccC----CCCCHHHHHHHHH
Confidence 12222333332 223 5667777788889999999987 44432 2222221 2234431 1457889999998
Q ss_pred -HCCCccCCCC-CC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 929 -DYGFHGPTMS-WP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 929 -~~Gi~~~~~~-~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
++||.+.... +. ..+.+||+++. ++++|++ +++.|++++++.+
T Consensus 341 ~~~gi~v~~g~~~~~~~~~~iRi~~~~--~~~~i~~--~l~~l~~~~~~~~ 387 (389)
T 1gd9_A 341 KEARVAVVPGSAFGKAGEGYVRISYAT--AYEKLEE--AMDRMERVLKERK 387 (389)
T ss_dssp HHTCEECEEGGGGCGGGTTBEEEECCS--CHHHHHH--HHHHHHHHHHHTT
T ss_pred HhCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHH--HHHHHHHHHHhcc
Confidence 8999875322 21 24789999985 8999999 7788888887654
No 103
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.82 E-value=2.6e-19 Score=204.67 Aligned_cols=296 Identities=11% Similarity=0.082 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHHHHhC--CCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEE
Q 001989 631 QEMFNNLGEWLCTITG--FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSV 707 (985)
Q Consensus 631 ~~~~~e~~~~la~l~G--~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v 707 (985)
.+..+++++++++++| .+... ++.++|++++..++.++. .++++|+++.+.|..+...++..|++++.+
T Consensus 70 ~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~ 141 (391)
T 4dq6_A 70 DSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELT--------KANDKIMIQEPVYSPFNSVVKNNNRELIIS 141 (391)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS--------CTTCEEEECSSCCTHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhC--------CCCCEEEEcCCCCHHHHHHHHHcCCeEEee
Confidence 4667788999999999 44444 455667766655444331 367899999888877777788899999999
Q ss_pred cCC--CC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccc---ccCHHHHHHHHHHcCCEEEEEccccccc-cCC--
Q 001989 708 GTD--AK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVY---EEGIDEICKIIHDNGGQVYMDGANMNAQ-VGL-- 776 (985)
Q Consensus 708 ~~d--~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i---~~di~eI~~la~~~galliVD~a~~~~~-~~l-- 776 (985)
|++ .+ +.+|+++|+++++ + +++|++++| |++|.+ + ++++|+++|+++|+++|+|++|.... .+-
T Consensus 142 ~~~~~~~~~~~~d~~~l~~~l~---~-~~~v~i~~p~nptG~~~~~~-~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~ 216 (391)
T 4dq6_A 142 PLQKLENGNYIMDYEDIENKIK---D-VKLFILCNPHNPVGRVWTKD-ELKKLGDICLKHNVKIISDEIHSDIILKKHKH 216 (391)
T ss_dssp CCEECTTSCEECCHHHHHHHCT---T-EEEEEEESSBTTTTBCCCHH-HHHHHHHHHHHTTCEEEEECTTTTCBCTTCCC
T ss_pred eeeecCCCceEeeHHHHHHHhh---c-CCEEEEECCCCCCCcCcCHH-HHHHHHHHHHHcCCEEEeeccccccccCCCCc
Confidence 987 23 3589999999997 5 999999999 469998 5 69999999999999999999984211 110
Q ss_pred CCCCccC-----CcEEEeCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhh
Q 001989 777 TSPGYIG-----ADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 777 ~~pg~~g-----~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~ 850 (985)
.....+. ..+++.|+||+|+. +|.++|++++++ ++.+.+...... ..+.+. +.
T Consensus 217 ~~~~~~~~~~~~~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~~~~-----------~~~~~~------~~ 275 (391)
T 4dq6_A 217 IPMASISKEFEKNTITCMAPTKTFNI----AGLQSSYVVLPDEKDYKLLDDAFTR-----------IDIKRN------NC 275 (391)
T ss_dssp CCGGGSCHHHHHTEEEEECSHHHHTC----GGGCCEEEECCSHHHHHHHHHHHHH-----------TTCCCC------CH
T ss_pred cCHHHcCccccCcEEEEEechhhccC----cccceEEEEeCCHHHHHHHHHHHHh-----------hcCCCC------CH
Confidence 0111222 23888999999954 356789998875 555443211000 001111 11
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH
Q 001989 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 851 ~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
....++.+.+.. +.+.+.+..++..++++++.+.|++ ...+....+.+..+ +.++++. .+.+..++.++|.+
T Consensus 276 ~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~l~~ 348 (391)
T 4dq6_A 276 FSLVATEASYNN-GESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEGTYL--LWVDFSA----LGLSDEELESILVQ 348 (391)
T ss_dssp HHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCSBSSE--EEEECGG----GCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCCccEE--EEEEhhh----cCCCHHHHHHHHHH
Confidence 222333344443 3445667777788889999999976 22332222222222 2355541 14578899999999
Q ss_pred C-CCccCCC-CC--CCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 930 Y-GFHGPTM-SW--PVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 930 ~-Gi~~~~~-~~--p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+ ||.+... .+ +..+.+||+++ ++++||++ +++.|++++
T Consensus 349 ~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~--~l~~l~~~l 390 (391)
T 4dq6_A 349 KGKVALNQGNSFGIGGSGYQRINLA--CPRSMLEE--ALIRIKNAI 390 (391)
T ss_dssp TTCEECEEGGGGCTTCTTEEEEECC--SCHHHHHH--HHHHHHHHH
T ss_pred hCCEEeeCchhhCCCCCCeEEEEEc--CCHHHHHH--HHHHHHHHh
Confidence 8 9987532 12 23489999998 68999999 767777654
No 104
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.82 E-value=8.5e-20 Score=209.83 Aligned_cols=293 Identities=13% Similarity=0.150 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA 711 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~ 711 (985)
....++++.+++++|.+ ..++.++|+++++.++. .+ ..++++|+++...|+.+...++..|++++.+|.
T Consensus 90 ~~~~~l~~~la~~~g~~-~~i~~~sGs~a~~~~~~---~~-----~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-- 158 (401)
T 1fc4_A 90 DSHKELEQKLAAFLGME-DAILYSSCFDANGGLFE---TL-----LGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-- 158 (401)
T ss_dssp HHHHHHHHHHHHHHTCS-EEEEESCHHHHHHTTHH---HH-----CCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT--
T ss_pred HHHHHHHHHHHHHhCCC-cEEEeCChHHHHHHHHH---HH-----cCCCCEEEEcchhHHHHHHHHHHcCCceEEECC--
Confidence 44668899999999998 45667888876654433 32 136789999999898777778889999998884
Q ss_pred CCCCCHHHHHHHHHhcCC---CEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CC-----CC-
Q 001989 712 KGNINIEELRKAAEANRD---NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TS-----PG- 780 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~~---~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~~-----pg- 780 (985)
+|+++|++++++.++ ++++|++++| |++|.+. |+++|.++|+++|+++|+|+++..+..+. .. .+
T Consensus 159 ---~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~ 234 (401)
T 1fc4_A 159 ---NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIA-NLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDV 234 (401)
T ss_dssp ---TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEEC-CHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTC
T ss_pred ---CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCC-CHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCC
Confidence 489999999973212 7899999998 5799998 89999999999999999999984333210 00 01
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
..+.|+++.|+||+|+ |++| |++++++++.+.+....... ..+.+. +...++++.+.+
T Consensus 235 ~~~~di~~~s~sK~~~-----~~~g-G~~~~~~~~~~~l~~~~~~~----------~~~~~~------~~~~~~a~~~~l 292 (401)
T 1fc4_A 235 MGRVDIITGTLGKALG-----GASG-GYTAARKEVVEWLRQRSRPY----------LFSNSL------APAIVAASIKVL 292 (401)
T ss_dssp TTCCSEEEEESSSTTC-----SSSC-EEEEECHHHHHHHHHHCHHH----------HHSCCC------CHHHHHHHHHHH
T ss_pred CcCCcEEEecchhhcc-----CCCC-EEEEcCHHHHHHHHHhCcCc----------eeCCCC------CHHHHHHHHHHH
Confidence 1257999999999984 2343 89998877655432100000 000111 112223333444
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC
Q 001989 861 AMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 861 ~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~ 939 (985)
..+.. ..+..++..++++++.+.|++ ++++. + +.+. + +.+.++. +.+..++.++|.++||.+....+
T Consensus 293 ~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~-~-~~~~-~--~~~~~~~-----~~~~~~l~~~l~~~gi~v~~~~~ 360 (401)
T 1fc4_A 293 EMVEA--GSELRDRLWANARQFREQMSAAGFTLA-G-ADHA-I--IPVMLGD-----AVVAQKFARELQKEGIYVTGFFY 360 (401)
T ss_dssp HHHHT--CHHHHHHHHHHHHHHHHHHHHTTCCBC-C-SSSS-E--EEEEEEC-----HHHHHHHHHHHHHTTEECCEECT
T ss_pred HHHhc--CHHHHHHHHHHHHHHHHHHHHcCCccc-C-CCCC-E--EEEEcCC-----hHHHHHHHHHHHHCCcEEeeecC
Confidence 44321 245566778889999999987 45543 2 2122 2 3455541 23467899999999998764332
Q ss_pred C----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 940 P----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 940 p----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+ ..+.+||+++..+|++|+++ +++.|++++++++
T Consensus 361 ~~~~~~~~~iRi~~~~~~~~~~i~~--~~~~l~~~~~~~~ 398 (401)
T 1fc4_A 361 PVVPKGQARIRTQMSAAHTPEQITR--AVEAFTRIGKQLG 398 (401)
T ss_dssp TSSCTTCEEEEEECCTTCCHHHHHH--HHHHHHHHHHHTT
T ss_pred CCCCCCCceEEEEeCCCCCHHHHHH--HHHHHHHHHHHhC
Confidence 2 13579999999999999999 8899999888764
No 105
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.82 E-value=2.8e-19 Score=209.70 Aligned_cols=299 Identities=12% Similarity=0.107 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHC----------
Q 001989 633 MFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMC---------- 700 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~---------- 700 (985)
...+++++++++++.+. ..++.+||++|++.++++++.|...+|..++++||+ ...+||.........
T Consensus 119 ~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~ 198 (457)
T 3tfu_A 119 PAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLW 198 (457)
T ss_dssp HHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC-------
T ss_pred HHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccc
Confidence 35588999999997544 346778999999999998888766666434557776 567888665443321
Q ss_pred ---CcEEEEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEc-C-CCcccccc---CHHHHHHHHHHcCCEEEEEcccc
Q 001989 701 ---GMKIVSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTY-P-STHGVYEE---GIDEICKIIHDNGGQVYMDGANM 770 (985)
Q Consensus 701 ---G~~vv~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~-p-n~~G~i~~---di~eI~~la~~~galliVD~a~~ 770 (985)
...+..++... .+..|+++|+++|+++.+++++|+++. + |..|++.+ .+++|.++|+++|++||+|+++.
T Consensus 199 ~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~ 278 (457)
T 3tfu_A 199 TDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIAT 278 (457)
T ss_dssp ---CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred cCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCcc
Confidence 11233344322 233589999999986546788888876 5 46787752 29999999999999999999873
Q ss_pred ccccCCCCCCc--------cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCC---CCccccCCCCCCCCCCCCC
Q 001989 771 NAQVGLTSPGY--------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP---SHPVVSTGGIPAPEKSQPL 839 (985)
Q Consensus 771 ~~~~~l~~pg~--------~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp---~~~~g~~~~~~~~~~~~~~ 839 (985)
++.+.+. ..+|+++++ |.++ +|.+++|++++++++.+.+. ...+
T Consensus 279 ----g~gr~G~~~a~~~~~~~pdiit~s--K~l~----gG~~~lG~v~~~~~i~~~~~~~~~~~~--------------- 333 (457)
T 3tfu_A 279 ----GFGRTGALFAADHAGVSPDIMCVG--KALT----GGYLSLAATLCTADVAHTISAGAAGAL--------------- 333 (457)
T ss_dssp ----TTTTTSSSSTHHHHTCCCSEEEEC--GGGG----TTSSCCEEEEEEHHHHHHHHHSSSCSC---------------
T ss_pred ----CCccccchhHhHhcCCCceEEEEC--hhhh----CCCcceEEEEEcHHHHHHhhccCCCce---------------
Confidence 2322222 236888654 8763 33368899999987765541 1100
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc--CC-ee-ecCCCCceeeEEEEEecCcccc
Q 001989 840 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH--YP-IL-FRGVNGTVAHEFIVDLRGLKNT 915 (985)
Q Consensus 840 ~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g--~~-l~-~~~~~~~~~~~~iv~~~~~~~~ 915 (985)
...+++.+++++++++.+.|..+..+++ .++..++.++++++|++. +. +. ..+ .+. + +.+.+.
T Consensus 334 -~~~~t~~~n~~a~aaa~aaL~~~~~~~~---~~~~~~~~~~l~~~L~~l~~~~~v~~vr~-~G~-~--~~i~l~----- 400 (457)
T 3tfu_A 334 -MHGPTFMANPLACAVSVASVELLLGQDW---RTRITELAAGLTAGLDTARALPAVTDVRV-CGA-I--GVIECD----- 400 (457)
T ss_dssp -CCCCTTTTCHHHHHHHHHHHHHHHTSCH---HHHHHHHHHHHHHHHGGGGGSTTEEEEEE-CSS-C--EEEEES-----
T ss_pred -eEecCCCcCHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHHHHhcCCCeeeeec-CCe-E--EEEEEC-----
Confidence 0001223355666666777776654443 445667788898888762 22 21 111 122 2 234443
Q ss_pred CCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 916 AGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 916 ~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+.+..++.++|.++|+.+... .+.+||+|+...|+||||+ ++++|++++++++
T Consensus 401 ~~~~~~~~~~~l~~~Gv~v~~~----~~~lRi~p~~~~t~eei~~--~l~~L~~~l~~~~ 454 (457)
T 3tfu_A 401 RPVDLAVATPAALDRGVWLRPF----RNLVYAMPPYICTPAEITQ--ITSAMVEVARLVG 454 (457)
T ss_dssp SCCCHHHHHHHHHHTTEECCCB----TTEEEECCCTTCCHHHHHH--HHHHHHHHHHHC-
T ss_pred CcccHHHHHHHHHHCCeEEEec----CCEEEEECCCCCCHHHHHH--HHHHHHHHHHHhc
Confidence 1345789999999999988643 4799999999999999999 8899999987654
No 106
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.82 E-value=1.4e-19 Score=206.61 Aligned_cols=292 Identities=11% Similarity=0.027 Sum_probs=196.3
Q ss_pred HHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC---
Q 001989 635 NNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD--- 710 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d--- 710 (985)
.++++.+++++|.+... ++.++|++|+..++.++. .++++|++++..|..+...++..|++++.+|.+
T Consensus 64 ~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 135 (381)
T 1v2d_A 64 PALREALAEEFAVEPESVVVTSGATEALYVLLQSLV--------GPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTP 135 (381)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEET
T ss_pred HHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCC
Confidence 47888899999987543 555677777755444331 367899998888888877788899999999986
Q ss_pred CCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEccccccccCCC--CCC--ccC
Q 001989 711 AKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQVGLT--SPG--YIG 783 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~~~~l~--~pg--~~g 783 (985)
+++.+|+++|+++++ +++++|++++|+ ++|.+.+ ++++|.++|+++|+++|+|+++.....+-. ... ..+
T Consensus 136 ~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~ 212 (381)
T 1v2d_A 136 EGFRLDLSALEKALT---PRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPE 212 (381)
T ss_dssp TEEECCHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTT
T ss_pred ccCCcCHHHHHHhcC---cCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcCC
Confidence 457899999999986 789999999985 6898852 489999999999999999999852211110 111 347
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM 863 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l 863 (985)
.|+++.|+||+|+.| |.++|++++++++.+.+..... ..+.+.+ .....++.++|...
T Consensus 213 ~~~~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~~~~~~------------~~~~~~~------~~~~~a~~~~l~~~ 270 (381)
T 1v2d_A 213 RTFTVGSAGKRLEAT----GYRVGWIVGPKEFMPRLAGMRQ------------WTSFSAP------TPLQAGVAEALKLA 270 (381)
T ss_dssp TEEEEEEHHHHTTCG----GGCCEEEECCTTTHHHHHHHHH------------HHTSSCC------HHHHHHHHHHHHHH
T ss_pred CEEEEeechhhcCCc----ccceEEEEeCHHHHHHHHHHHh------------hcccCCC------cHHHHHHHHHHhCc
Confidence 899999999998533 4568999998776554321000 0001111 11222223344432
Q ss_pred c-HHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-CCC
Q 001989 864 G-SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-SWP 940 (985)
Q Consensus 864 g-~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~p 940 (985)
. .+++++..++..++++++.+.|++ ++.+. .+.+..+ +.++++ +.+ +.+.|.++||.+... .+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~--~~~~~~------~~~---~~~~l~~~gi~v~~g~~~~ 337 (381)
T 1v2d_A 271 RREGFYEALREGYRRRRDLLAGGLRAMGLRVY--VPEGTYF--LMAELP------GWD---AFRLVEEARVALIPASAFY 337 (381)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEE--CCSBSSE--EEEECT------TCC---HHHHHHHTCEECEEGGGGC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHCCCEec--CCCcceE--EEEecC------hHh---HHHHHHhCCEEEecchHhC
Confidence 1 345677777888899999999987 55543 2222222 345554 122 677788899987532 121
Q ss_pred ----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 941 ----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 941 ----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
..+++||+++. +++||++ +++.|+++++..+.
T Consensus 338 ~~~~~~~~iRi~~~~--~~~~i~~--~~~~l~~~l~~~r~ 373 (381)
T 1v2d_A 338 LEDPPKDLFRFAFCK--TEEELHL--ALERLGRVVNSPRE 373 (381)
T ss_dssp SSSCCTTEEEEECCS--CHHHHHH--HHHHHHHHC-----
T ss_pred CCCCCCCEEEEEeCC--CHHHHHH--HHHHHHHHHhhccc
Confidence 24799999986 8999999 77888888776554
No 107
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.82 E-value=1.6e-19 Score=205.84 Aligned_cols=296 Identities=14% Similarity=0.118 Sum_probs=193.0
Q ss_pred hhHHHHHHHHHHHHHHHhCCC---c-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD---S-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~---~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+++.+++.+.+|.+ . ..++.++|++++..++.++. .++++|+++.+.|..+...++..|++
T Consensus 63 ~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~--------~~gd~vl~~~p~y~~~~~~~~~~g~~ 134 (376)
T 2dou_A 63 SCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALT--------EPEDLLLLPEVAYPSYFGAARVASLR 134 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSCCHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhc--------CCCCEEEECCCCcHhHHHHHHHcCCE
Confidence 465555555555555555875 2 23455666666644444331 36789999888776666667789999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEccccccc-cC-CCC
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VG-LTS 778 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~-l~~ 778 (985)
++.+|++.++.+|+++|+++++ +++++|++++|+ ++|.+.+ ++++|.++|+++|+++++|+++.... .+ ...
T Consensus 135 ~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~ 211 (376)
T 2dou_A 135 TFLIPLREDGLADLKAVPEGVW---REAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPS 211 (376)
T ss_dssp EEEECBCTTSSBCGGGSCHHHH---HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCC
T ss_pred EEEeeCCCCCCCCHHHHHHhhc---cCceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCC
Confidence 9999984445689999999997 689999999884 6898862 37899999999999999999985321 11 001
Q ss_pred C----CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHH
Q 001989 779 P----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 779 p----g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
+ +..+.++++.|++|+|+. +|.++|++++++++.+.+...... .+.+. +.....
T Consensus 212 ~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~l~~~~~~------------~~~~~------~~~~~~ 269 (376)
T 2dou_A 212 PLALPGAKERVVELFSLSKSYNL----AGFRLGFALGSEEALARLERVKGV------------IDFNQ------YAGVLR 269 (376)
T ss_dssp GGGSTTGGGTEEEEEEHHHHHTC----GGGCCEEEEECHHHHHHHHHHHHH------------HCCCS------CHHHHH
T ss_pred hhhcCCCCCcEEEEecchhhcCC----hhheeEEEecCHHHHHHHHHHHHh------------cccCC------CHHHHH
Confidence 1 223567888999999854 356789999887766544211000 00011 112222
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCcc
Q 001989 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHG 934 (985)
Q Consensus 855 ~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~ 934 (985)
++.++|.. +.+.+.+..++..++++++.+.|++. +....+.+..+ +.++++ .+.+..++.++|.++||.+
T Consensus 270 a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~l~~~gi~v 339 (376)
T 2dou_A 270 MGVEALKT-PKEVVRGYARVYRERALGMAEALKGV--LSLLPPRATMY--LWGRLP-----EGVDDLEFGLRLVERGVAL 339 (376)
T ss_dssp HHHHHHTS-CHHHHHHHHHHHHHHHHHHHHHHTTT--SEECCCCBSSE--EEEECC-----TTCCHHHHHHHHHHTTEEC
T ss_pred HHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHh--cCccCCCeeEE--EEEECC-----CCCCHHHHHHHHHHCCEEE
Confidence 23334432 34566677777888899999999764 32222222222 335554 2456788999999999987
Q ss_pred CCC-CCC--CCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 935 PTM-SWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 935 ~~~-~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
... .+. ..+++||+++. +++||++ +++.|+++
T Consensus 340 ~~g~~f~~~~~~~~Ris~~~--~~~~i~~--~l~~l~~~ 374 (376)
T 2dou_A 340 APGRGFGPGGKGFVRIALVR--PLEELLE--AAKRIREA 374 (376)
T ss_dssp EEGGGGCGGGTTEEEEECCS--CHHHHHH--HHHHHHHT
T ss_pred cCchhhCCCCCCeEEEEecC--CHHHHHH--HHHHHHHH
Confidence 532 222 24799999975 7899999 66666554
No 108
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.82 E-value=6.6e-19 Score=201.10 Aligned_cols=320 Identities=13% Similarity=0.109 Sum_probs=216.3
Q ss_pred CCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCc-ceeeccchHHHHHHHHHHhhhhcCCC
Q 001989 177 NTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMS-NASLLDEGTAAAEAMAMCNNIQKGKK 255 (985)
Q Consensus 177 ~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~-~~sl~~~~ta~~ea~~~a~~~~~~~g 255 (985)
|..+|+.+.+++.... .. .+.+. ..+...++++.+++++|.+.. ++.+++|||.++++++.++ . ++|
T Consensus 31 p~~~~~~v~~a~~~~~--~~---~~~~~----~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~-~--~~g 98 (393)
T 3kgw_A 31 PSNLAPRVLAAGSLRM--IG---HMQKE----MLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNL-L--EPG 98 (393)
T ss_dssp CCCCCHHHHHHTTCCC--CC---TTSHH----HHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHH-C--CTT
T ss_pred CCCCCHHHHHHhcccc--cC---cccHH----HHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhc-C--CCC
Confidence 5567888875544321 11 12222 235566788999999999765 4778899998888777655 3 389
Q ss_pred CEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHh
Q 001989 256 KTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHA 324 (985)
Q Consensus 256 ~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~-~t~~V~v~~p-n~~G~v~di~~I~~~a~~ 324 (985)
|+|+++...|.+.. +...++..|.+++.++. ++|++ +++ ++++|++.+| |.+|.+.|+++|.++|++
T Consensus 99 d~vl~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~ 176 (393)
T 3kgw_A 99 DSFLTGTNGIWGMR--AAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCHR 176 (393)
T ss_dssp CEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHH
T ss_pred CEEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHHHHHHHHH
Confidence 99999977664321 12223346888877653 45665 665 8999999988 789999999999999999
Q ss_pred CCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceee
Q 001989 325 NGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRV 402 (985)
Q Consensus 325 ~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l 402 (985)
+|+++++| +.++.|... ....+|+|+++.+. |+|+ |++|+|++++++++++.+.....++ ..|.+
T Consensus 177 ~~~~li~D-e~~~~g~~~~~~~~~~~d~~~~s~sK~~~-----~~~g~g~~~~~~~~~~~~~~~~~~~-------~~~~~ 243 (393)
T 3kgw_A 177 YQCLLLVD-SVASLGGVPIYMDQQGIDIMYSSSQKVLN-----APPGISLISFNDKAKYKVYSRKTKP-------VSFYT 243 (393)
T ss_dssp TTCEEEEE-CTTTTTTSCCCTTTTTCCEEEEESSSTTC-----CCSSCEEEEECHHHHHHHHTCSSCC-------SCSTT
T ss_pred cCCEEEEE-CCccccCcccchhhcCCCEEEecCccccc-----CCCceeEEEECHHHHHHHhccCCCC-------Cceee
Confidence 99999995 345555332 34678999999998 7674 3456899999998877663221111 11222
Q ss_pred ecccc------cccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC---C
Q 001989 403 AMQTR------EQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL---P 473 (985)
Q Consensus 403 ~l~tr------e~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~---~ 473 (985)
++... .+..+...+|.|+ ....++.+++ .++..+|++++.++..++.+++.+.|+++| +++... .
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~ 317 (393)
T 3kgw_A 244 DITYLAKLWGCEGETRVIHHTTPV---TSLYCLRESL--ALIAEQGLENCWRRHREATAHLHKHLQEMG-LKFFVKDPEI 317 (393)
T ss_dssp CHHHHHHHTTCSSSCCCCCCCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBSSSSGGG
T ss_pred cHHHHHHhhhhccccCCCCCCCCH---HHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHcC-CeeccCChhh
Confidence 11100 0111233445554 3344444443 455567899999999999999999999996 877531 1
Q ss_pred Cc-ceEEEecC-C--HHHHHHHHHHc-Cceeeee----cCCeEEEEe-ccCCCHHHHHHHHHHHhC
Q 001989 474 FF-DTVKVKCA-D--AHAIASAAYKI-EMNLRVV----DSNTVTASF-DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 474 ~~-~~~~~~~~-~--~~~v~~~L~~~-GI~~~~~----~~~~lris~-t~~~t~edId~li~aL~~ 529 (985)
.. ..+.+..+ + ..++.++|.++ ||.+... .++.+|+++ ...+|++|+++++++|.+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~ 383 (393)
T 3kgw_A 318 RLPTITTVTVPAGYNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALRE 383 (393)
T ss_dssp BCSSEEEEECCTTBCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHH
Confidence 12 22345654 2 78999999887 9988642 357899998 555699999999999974
No 109
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.82 E-value=1.3e-19 Score=208.59 Aligned_cols=303 Identities=12% Similarity=0.099 Sum_probs=203.5
Q ss_pred hhHHHHHHHHHHHHHHHhCCC----ccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD----SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~----~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
.|..++.+++++++++++|.+ ...++.++|++++..++.++ ..++++|+++.+.|..+...++..|++
T Consensus 78 ~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l--------~~~gd~vl~~~~~~~~~~~~~~~~g~~ 149 (407)
T 3nra_A 78 RGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT--------VARGDKVAIVQPDYFANRKLVEFFEGE 149 (407)
T ss_dssp TCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTT--------CCTTCEEEEEESCCTHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHh--------CCCCCEEEEcCCcccchHHHHHHcCCE
Confidence 466678888999999999984 22355566666664443322 146789999988888777778899999
Q ss_pred EEEEcC------CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccC---HHHHHHHHHHcCCEEEEEccccccc
Q 001989 704 IVSVGT------DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 704 vv~v~~------d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~ 773 (985)
++.+|+ +.++.+|+++|+++++ +++++|++++|+ ++|.+. + +++|+++|+++|+++++|++|....
T Consensus 150 ~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~ 225 (407)
T 3nra_A 150 MVPVQLDYVSADETRAGLDLTGLEEAFK---AGARVFLFSNPNNPAGVVY-SAEEIGQIAALAARYGATVIADQLYSRLR 225 (407)
T ss_dssp EEEEEBCCCSSCCSSCCBCHHHHHHHHH---TTCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSB
T ss_pred EEEeecccccccCcCCCcCHHHHHHHHh---hCCcEEEEcCCCCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 999998 3568899999999998 688899999995 699987 6 9999999999999999999985311
Q ss_pred -cC--CCCC-----CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCc
Q 001989 774 -VG--LTSP-----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAA 845 (985)
Q Consensus 774 -~~--l~~p-----g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~ 845 (985)
++ .... ...+.++++.|++|+|+. .|.++|++++++++.+.+...... . ..+.+
T Consensus 226 ~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~l~~~~~~------------~--~~~~~ 287 (407)
T 3nra_A 226 YAGASYTHLRAEAAVDAENVVTIMGPSKTESL----SGYRLGVAFGSRAIIARMEKLQAI------------V--SLRAA 287 (407)
T ss_dssp CTTCCCCCGGGCTTSCGGGEEEEECSSSTTCC----GGGCCEEEEECHHHHHHHHHHHHH------------H--TSSSC
T ss_pred cCCCCCCChhhcCcccCCcEEEEeCcccccCC----CeeeEEEEEcCHHHHHHHHHHHhh------------h--ccCCC
Confidence 11 1010 124456889999999854 356789999887766544211000 0 01111
Q ss_pred chhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHH
Q 001989 846 PWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAK 925 (985)
Q Consensus 846 ~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~ 925 (985)
..++ .++.+++. .+.+.+.+..++..++++++.+.|++...+....+.+..+ +.+.++. .+.+..++.+
T Consensus 288 ~~~~----~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~ 356 (407)
T 3nra_A 288 GYSQ----AVLRGWFD-EAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSY--LFPRLPK----LAVAPAEFVK 356 (407)
T ss_dssp HHHH----GGGGGTTC-CCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSSE--ECCBCCC----BSSCHHHHHH
T ss_pred hHHH----HHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEE--EEEeCCC----CCCCHHHHHH
Confidence 1111 11112222 1224456666777888899999998632222212222222 2344431 1457889999
Q ss_pred HHHH-CCCccCCCC-C--CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 926 RLMD-YGFHGPTMS-W--PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 926 ~L~~-~Gi~~~~~~-~--p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+|.+ +||.+.... + ...+.+||+++. +++||++ +++.|++++++++
T Consensus 357 ~l~~~~gi~v~~g~~~~~~~~~~iRis~~~--~~~~i~~--~~~~l~~~~~~~~ 406 (407)
T 3nra_A 357 ILRLQAGVVVTPGTEFSPHTADSVRLNFSQ--DHEAAVA--AARRIVTLVERYR 406 (407)
T ss_dssp HHHHHHCEECEEGGGTCTTCTTBEEEECCS--CHHHHHH--HHHHHHHHHHHHB
T ss_pred HHHHhCCEEEeCchhhCCCCCCEEEEEeCC--CHHHHHH--HHHHHHHHHHHhh
Confidence 9976 599875322 1 135899999984 9999999 8899999888765
No 110
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.82 E-value=1.1e-19 Score=207.61 Aligned_cols=288 Identities=12% Similarity=0.080 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA 711 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~ 711 (985)
+...++++.+++++|.+ ..++.++|++++..++.+ + ..++++|+++...|+.+...++..|.+++.+|.
T Consensus 84 ~~~~~l~~~la~~~g~~-~~i~~~sGt~a~~~~~~~---~-----~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-- 152 (384)
T 1bs0_A 84 VVHQALEEELAEWLGYS-RALLFISGFAANQAVIAA---M-----MAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-- 152 (384)
T ss_dssp HHHHHHHHHHHHHHTCS-EEEEESCHHHHHHHHHHH---H-----CCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT--
T ss_pred HHHHHHHHHHHHHhCCC-cEEEeCCcHHHHHHHHHH---h-----CCCCcEEEEcccccHHHHHHHHHcCCCEEEeCC--
Confidence 34568899999999987 456677888776544433 2 146789999999898877778889999999985
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccC---CCCCCc--cCCc
Q 001989 712 KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG---LTSPGY--IGAD 785 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~---l~~pg~--~g~D 785 (985)
+|+++|++++++.++++++|++++| |++|.+. |+++|.++|+++|+++++|++|..+..+ ...+.. .++|
T Consensus 153 ---~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~d 228 (384)
T 1bs0_A 153 ---NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSA-PLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPE 228 (384)
T ss_dssp ---TCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBC-CHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCS
T ss_pred ---CCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCcc-CHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCc
Confidence 4899999999843334788888888 5799998 8999999999999999999998543211 000111 3589
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
+++.|+||+|+ .+| |++++++++.+.+....... .. +... +...+.++.+.+..+..
T Consensus 229 i~~~s~sK~~~------~~G-G~~~~~~~~~~~l~~~~~~~-----------~~-~~~~----~~~~~~~~~~al~~~~~ 285 (384)
T 1bs0_A 229 LLVVTFGKGFG------VSG-AAVLCSSTVADYLLQFARHL-----------IY-STSM----PPAQAQALRASLAVIRS 285 (384)
T ss_dssp EEEEESSSTTS------SCC-EEEEECHHHHHHHHHHCHHH-----------HS-SBCC----CHHHHHHHHHHHHHHHS
T ss_pred EEEeeccchhh------ccC-cEEEeCHHHHHHHHHhchhh-----------hc-CCCC----CHHHHHHHHHHHHHHhc
Confidence 99999999984 234 89998877654432100000 00 0011 12223333444554432
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC----
Q 001989 866 KGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP---- 940 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p---- 940 (985)
..+.+..++..++++++.+.|++ ++++. ++.+.++ .+.++ .+.+..++.++|.++||.+....++
T Consensus 286 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~---~~~~~-----~~~~~~~l~~~l~~~gi~v~~~~~~~~~~ 355 (384)
T 1bs0_A 286 DEGDARREKLAALITRFRAGVQDLPFTLA--DSCSAIQ---PLIVG-----DNSRALQLAEKLRQQGCWVTAIRPPTVPA 355 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCEEC--SCCSSBC---CEEEE-----SHHHHHHHHHHHHHTTEECCEECTTSSCT
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCCccc--CCCCCEE---EEEeC-----CHHHHHHHHHHHHHCCcEEEeecCCCCCC
Confidence 13456667788899999999987 44432 2222222 23443 1235678999999999987653322
Q ss_pred CCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 941 VPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 941 ~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
..+.+||+++..+|++|+++ +++.|++
T Consensus 356 ~~~~~Ri~~~~~~~~~~i~~--~~~~l~~ 382 (384)
T 1bs0_A 356 GTARLRLTLTAAHEMQDIDR--LLEVLHG 382 (384)
T ss_dssp TCEEECCBCCTTCCHHHHHH--HHHHHHH
T ss_pred CCceEEEEEcCCCCHHHHHH--HHHHHHh
Confidence 13689999999999999999 6666654
No 111
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.82 E-value=4.3e-18 Score=201.91 Aligned_cols=359 Identities=13% Similarity=0.092 Sum_probs=226.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCC---ccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHH
Q 001989 140 KFSKFDEGLTESQMIEHMQKLASMNK---VYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNF 216 (985)
Q Consensus 140 ~lp~~~~~~se~e~~~~~~~l~~~n~---~~~~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~ 216 (985)
.+| .++.+-.++++++.+....+. ....|+|....+...|+++. .++.. ...........+.+..+...+.
T Consensus 72 ~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~v~~-~~~~~---~~n~~~~~~~~~~~~~~le~~~ 145 (497)
T 2qma_A 72 DLD--NKNAPLKSVIDDVAELVAKNAIFTQHPDCIAHLHTPPLMPAVAA-EAMIA---ALNQSMDSWDQASSATYVEQKV 145 (497)
T ss_dssp CSS--SCCCCHHHHHHHHHHHTTTTSCCTTSTTBCSSSCCCCBHHHHHH-HHHHH---HHCCCTTCGGGCHHHHHHHHHH
T ss_pred CCC--CCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeCCCCCcHHHHHH-HHHHH---hhcccccchhhChHHHHHHHHH
Confidence 456 467888999999987544332 12346666655544455443 44321 1111111223344555666667
Q ss_pred HHHHHHhcCCCC-cceeeccchHHHHHHHHHHhhh--h----------cC-C---CC-EEEEcCCCChhHHHHHHHhhcC
Q 001989 217 QTMIADLTGLPM-SNASLLDEGTAAAEAMAMCNNI--Q----------KG-K---KK-TFIIASNCHPQTIDICITRADG 278 (985)
Q Consensus 217 q~~ia~L~g~~~-~~~sl~~~~ta~~ea~~~a~~~--~----------~~-~---g~-~Vlv~~~~H~s~~~~~~~~a~~ 278 (985)
++++++++|.+. ..+.+++|||.++..++.+.+. . .+ + ++ +|+++...|+++...++.+ +
T Consensus 146 ~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~--g 223 (497)
T 2qma_A 146 VNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWM--G 223 (497)
T ss_dssp HHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHT--T
T ss_pred HHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHc--C
Confidence 899999999975 6788999999887776655321 0 11 0 45 8999999999999988653 2
Q ss_pred CCe-EEEEeCc--------hhhhc-cCCC------EeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC
Q 001989 279 FDI-KVVVSDL--------KDIDY-KSGD------VCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL 341 (985)
Q Consensus 279 ~gi-~v~~v~~--------~~l~~-l~~~------t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l 341 (985)
.|. +++.++. ++|++ ++++ +.+|+++++ |.+|.++|+++|+++|+++|++++||+ .++.+..
T Consensus 224 ~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~-a~~~~~~ 302 (497)
T 2qma_A 224 LGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDG-AYGGALI 302 (497)
T ss_dssp SCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEE-TTGGGGG
T ss_pred CCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEeh-hhhHHHH
Confidence 344 5666654 45655 5432 447888876 679999999999999999999999954 2333322
Q ss_pred CCC-----Ccc-cceEEEecC-ccccccCCCCCCcEEEEEEchhh-HhcCCC--ceeeeeecCCCCcceeeecccccccc
Q 001989 342 KPP-----GEL-GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEY-KRMMPG--RIVGVSIDSSGKPALRVAMQTREQHI 411 (985)
Q Consensus 342 ~~~-----~~~-GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~-~~~lp~--~~vG~t~d~~g~~~~~l~l~tre~~i 411 (985)
..+ ..+ ++|+++.++ |++++|. ++|+++++++. ++.+.. ..+.. .. .....+ +..+ -+--
T Consensus 303 ~~~~~~~~~gi~~~D~i~~s~hK~l~~p~-----~~G~l~~~~~~~~~~~~~~~~yl~~-~~-~~~~~~-~~~~--~~~~ 372 (497)
T 2qma_A 303 LSSHKSRLKGVERAHSISVDFHKLFYQTI-----SCGALLVNDKSNFKFLLHHADYLNR-EH-DELPNL-VDKS--IATT 372 (497)
T ss_dssp GSTTGGGGTTGGGCSEEEEETTTTTCCCS-----SCEEEEESCGGGGGGGCC-------------------------CCS
T ss_pred hCcchHhhcCcccCCEEEEcchhccCCCc-----ceEEEEEeCHHHHHHhcCCchhcCC-cc-ccCCCc-cccC--CCCC
Confidence 111 123 789999998 7676553 46888887643 333311 00000 00 000000 0000 0011
Q ss_pred cccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC-------
Q 001989 412 RRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD------- 484 (985)
Q Consensus 412 rre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~------- 484 (985)
||. .++ ++.++ +..+|.+|++++.++..++++++++.|+++.+++++.++..+.+.|+...
T Consensus 373 r~~---------~al-~~~~~--l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~ 440 (497)
T 2qma_A 373 KRF---------DAL-KVFMT--MQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRATHETADLDE 440 (497)
T ss_dssp CCC---------THH-HHHHH--HHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSSSEEEEEECCSSSCHHH
T ss_pred Cch---------hHH-HHHHH--HHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCCceEEEEEEcCCccCHHH
Confidence 111 111 22223 36789999999999999999999999999844998765555666666532
Q ss_pred -HHHHHHHHHHcCceeee---ec-CCeEEEEe-ccCCCHHHHHHHHHHHhC
Q 001989 485 -AHAIASAAYKIEMNLRV---VD-SNTVTASF-DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 -~~~v~~~L~~~GI~~~~---~~-~~~lris~-t~~~t~edId~li~aL~~ 529 (985)
..++.+.|.++|+.+.. .. .+.+|+++ +.++|++|||+++++|.+
T Consensus 441 l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~~l~~ 491 (497)
T 2qma_A 441 LNKALRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLSKINM 491 (497)
T ss_dssp HHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 24677888888987632 12 25799998 889999999999999874
No 112
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.82 E-value=1.7e-19 Score=207.22 Aligned_cols=297 Identities=13% Similarity=0.144 Sum_probs=203.1
Q ss_pred hhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSV 707 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v 707 (985)
.|..+..+++++++++++|.+. .++.++|++|+..++.++. .++++|+++.+.|+.+...++..|++++.+
T Consensus 84 ~g~~~~~~~l~~~la~~~g~~~-v~~~~ggt~a~~~~~~~~~--------~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v 154 (398)
T 3a2b_A 84 NGTLDIHVELEEKLSAYVGKEA-AILFSTGFQSNLGPLSCLM--------GRNDYILLDERDHASIIDGSRLSFSKVIKY 154 (398)
T ss_dssp TCCCHHHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHSS--------CTTCEEEEETTCCHHHHHHHHHSSSEEEEE
T ss_pred cCCcHHHHHHHHHHHHHhCCCc-EEEECCHHHHHHHHHHHHh--------CCCCEEEECCccCHHHHHHHHHcCCceEEe
Confidence 4555677889999999999864 4556777777654444331 467899999999988888888999999999
Q ss_pred cCCCCCCCCHHHHHHHHHhcCC-CEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCC-C-CC-Ccc
Q 001989 708 GTDAKGNINIEELRKAAEANRD-NLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-T-SP-GYI 782 (985)
Q Consensus 708 ~~d~~g~iD~e~L~~~i~~~~~-~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~-~p-g~~ 782 (985)
|. +|+++|++++++.++ ++++|++++|+ ++|.+. |+++|.++|+++|+++++|+++..+..+. . .. ..+
T Consensus 155 ~~-----~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~-~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~ 228 (398)
T 3a2b_A 155 GH-----NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIV-NLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHF 228 (398)
T ss_dssp CT-----TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBC-CHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHH
T ss_pred CC-----CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCcc-CHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhc
Confidence 86 589999999984322 78999999984 699998 89999999999999999999985332110 0 11 111
Q ss_pred ----CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHH
Q 001989 783 ----GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 783 ----g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a 858 (985)
++|+++.|+||+|+ .+| |++++++++.+.+....... ...... ....++++.+
T Consensus 229 ~~~~~~di~~~s~sK~~~------~~G-G~~~~~~~~~~~l~~~~~~~-----------~~~~~~-----~~~~~a~~~~ 285 (398)
T 3a2b_A 229 GLNDDVDLIMGTFSKSLA------SLG-GFVAGDADVIDFLKHNARSV-----------MFSASM-----TPASVASTLK 285 (398)
T ss_dssp TCGGGCSEEEEESSSTTC------SSC-EEEEECHHHHHHHHHHCHHH-----------HSSBCC-----CHHHHHHHHH
T ss_pred CCCcCCeEEEeccccccc------CCC-cEEEeCHHHHHHHHHhcccc-----------eecCCC-----CHHHHHHHHH
Confidence 36999999999984 234 89999877654432100000 000111 1111222234
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC
Q 001989 859 YIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 859 ~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~ 937 (985)
.|..+ +.+.+..++..++++++.+.|++ ++.+. .+.+. .+.+.++ .+.+..++.++|.++||.+...
T Consensus 286 ~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~g~---~~~~~~~-----~~~~~~~l~~~l~~~gi~v~~~ 353 (398)
T 3a2b_A 286 ALEII--QNEPEHIEKLWKNTDYAKAQLLDHGFDLG--ATESP---ILPIFIR-----SNEKTFWVTKMLQDDGVFVNPV 353 (398)
T ss_dssp HHHHH--HHCTHHHHHHHHHHHHHHHHHHHTTCCBC--SCCSS---EEEEECC-----CHHHHHHHHHHHHHTTEECEEE
T ss_pred HHHHH--hhCHHHHHHHHHHHHHHHHHHHhcCCCcC--CCCCC---EEEEEcC-----CHHHHHHHHHHHHHCCcEEEee
Confidence 44443 22445666778888999999987 44442 22222 2345543 1235678999999999987543
Q ss_pred CCC----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 938 SWP----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 938 ~~p----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
..+ ..+++||+++..++++|+++ +++.|+++++++..
T Consensus 354 ~~~~~~~~~~~iRis~~~~~~~e~i~~--~~~~l~~~l~~~~~ 394 (398)
T 3a2b_A 354 VSPAVPAEESLIRFSLMATHTYDQIDE--AIEKMVKVFKQAEV 394 (398)
T ss_dssp CTTTSCGGGCEEEEECCTTCCHHHHHH--HHHHHHHHHHHCC-
T ss_pred CCCCCCCCCceEEEEEeCCCCHHHHHH--HHHHHHHHHHHhCc
Confidence 221 24789999999999999999 88999998877643
No 113
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.82 E-value=5.1e-19 Score=203.42 Aligned_cols=293 Identities=16% Similarity=0.161 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
...++++.+++++|.+. .+..++|++++++++.++... .++++|+++...|+++...++..|++++.+|.+
T Consensus 92 ~~~~l~~~la~~~~~~~-~i~~~sG~~a~~~~~~~l~~~------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-- 162 (401)
T 2bwn_A 92 YHRRLEAEIAGLHQKEA-ALVFSSAYNANDATLSTLRVL------FPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-- 162 (401)
T ss_dssp HHHHHHHHHHHHTTCSE-EEEESCHHHHHHHHHHHHHHH------STTCEEEEETTCCHHHHHHHHHSCCCEEEECTT--
T ss_pred HHHHHHHHHHHHhCCCc-EEEECCcHHHHHHHHHHHhcC------CCCCEEEECchhhHHHHHHHHHcCCeEEEEcCC--
Confidence 45688899999999753 455578887665554443211 257899999988888777788899999999975
Q ss_pred CCCCHHHHHHHHHhcC-CCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CC--CCcc----C
Q 001989 713 GNINIEELRKAAEANR-DNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TS--PGYI----G 783 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~-~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~~--pg~~----g 783 (985)
|+++|++++++.+ +++++|++++| |++|.+. |+++|.++|+++|+++++|++|..+..+. .. .... .
T Consensus 163 ---d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~ 238 (401)
T 2bwn_A 163 ---DVAHLRELIAADDPAAPKLIAFESVYSMDGDFG-PIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHR 238 (401)
T ss_dssp ---CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBC-CHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGG
T ss_pred ---CHHHHHHHHHhhccCCceEEEEecCcCCCCCcC-CHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCcccc
Confidence 8999999997544 47899999998 5799998 89999999999999999999986332110 00 0011 3
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM 863 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l 863 (985)
.|+++.+++|+|+. || |+++.++++.+.+.....+. ..... + +...++++.+.+..+
T Consensus 239 ~~i~~~s~sK~~~~------~G-G~~~~~~~~~~~l~~~~~~~----------~~~~~--~----~~~~~~a~~~al~~~ 295 (401)
T 2bwn_A 239 IDIFNGTLAKAYGV------FG-GYIAASARMVDAVRSYAPGF----------IFSTS--L----PPAIAAGAQASIAFL 295 (401)
T ss_dssp CSEEEEESSSTTCS------CC-EEEEECHHHHHHHHHHCHHH----------HTSBC--C----CHHHHHHHHHHHHHH
T ss_pred CcEEEeechhhccC------CC-CEEecCHHHHHHHHHhCcCc----------eecCC--C----CHHHHHHHHHHHHHH
Confidence 58999999999853 44 78888766554331100000 00001 1 112233344556666
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCCCccCCCCCC-
Q 001989 864 GSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYGFHGPTMSWP- 940 (985)
Q Consensus 864 g~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~Gi~~~~~~~p- 940 (985)
...|+.+..++..++++++.+.|++ ++.+. ++.+. .+.+.++ .+.+..++.++|. ++||.+....++
T Consensus 296 ~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~---~~~~~~~-----~~~~~~~~~~~L~~~~gi~v~~~~~~~ 365 (401)
T 2bwn_A 296 KTAEGQKLRDAQQMHAKVLKMRLKALGMPII--DHGSH---IVPVVIG-----DPVHTKAVSDMLLSDYGVYVQPINFPT 365 (401)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHTCCBC--CCSSS---CEEEECC-----CHHHHHHHHHHHHHHHCEECCEECTTT
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHCCCccc--CCCCC---eEEEEeC-----ChHHHHHHHHHHHhcCCEEEeecCCCC
Confidence 5556777778888999999999987 45442 22222 2445543 1234678999996 789998643322
Q ss_pred C---CCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 941 V---PGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 941 ~---~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
. .+.+|++++.++|++||++ +++.|++++++
T Consensus 366 ~~~~~~~iRis~~~~~t~~~i~~--~~~~l~~~~~~ 399 (401)
T 2bwn_A 366 VPRGTERLRFTPSPVHDLKQIDG--LVHAMDLLWAR 399 (401)
T ss_dssp SCTTCCEEEECCCTTSCHHHHHH--HHHHHHHHC--
T ss_pred CCCCCceEEEEeeCCCCHHHHHH--HHHHHHHHHHh
Confidence 2 2589999999999999999 77888877654
No 114
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.82 E-value=1.9e-18 Score=197.96 Aligned_cols=323 Identities=11% Similarity=0.067 Sum_probs=214.4
Q ss_pred CCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCc-ceeeccchHHHHHHHHHHhhhhcCCC
Q 001989 177 NTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMS-NASLLDEGTAAAEAMAMCNNIQKGKK 255 (985)
Q Consensus 177 ~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~-~~sl~~~~ta~~ea~~~a~~~~~~~g 255 (985)
|..+|+.+.+++.+. +...|+|+ ....+.++++.+|+++|.+.. ++.+++|+|.++++++.++ . ++|
T Consensus 26 p~~~~~~v~~a~~~~--~~~~~~~~-------~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~-~--~~g 93 (396)
T 2ch1_A 26 PSNCSKRVLTAMTNT--VLSNFHAE-------LFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNL-L--EEG 93 (396)
T ss_dssp SCCCCHHHHHHTTSC--CCCTTCHH-------HHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH-C--CTT
T ss_pred CCCCCHHHHHHhccc--cccCCChh-------HHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHh-c--CCC
Confidence 445777776554332 11123221 124467889999999999887 7889999998888777665 2 378
Q ss_pred CEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHh
Q 001989 256 KTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHA 324 (985)
Q Consensus 256 ~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~-~t~~V~v~~p-n~~G~v~di~~I~~~a~~ 324 (985)
|+|++++..|+++. +...++..|++++.++. +++++ +++ ++++|++++| |++|.+.|+++|.++|++
T Consensus 94 d~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~ 171 (396)
T 2ch1_A 94 DRVLIAVNGIWAER--AVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQ 171 (396)
T ss_dssp CEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHH
T ss_pred CeEEEEcCCcccHH--HHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHHHHHHHH
Confidence 99999999999874 21223456888877753 35555 665 7899999988 889999999999999999
Q ss_pred CCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCc---eeeeeecCCCCcc
Q 001989 325 NGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGR---IVGVSIDSSGKPA 399 (985)
Q Consensus 325 ~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~---~vG~t~d~~g~~~ 399 (985)
+|+++++| +..++|... ....+|+|+++.+. |++++ +|++|++++++++++.+... +-.+..+..+.+.
T Consensus 172 ~~~~li~D-ea~~~g~~~~~~~~~~~d~~~~s~~K~~~~-----~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (396)
T 2ch1_A 172 HDCLLIVD-AVASLCGVPFYMDKWEIDAVYTGAQKVLGA-----PPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGN 245 (396)
T ss_dssp TTCEEEEE-CTTTBTTBCCCTTTTTCCEEECCCC-CCCC-----CSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHH
T ss_pred cCCEEEEE-ccccccCCccchhhcCcCEEEEcCCccccC-----CCCeEEEEECHHHHHhhhhccCcccceEechHHHHH
Confidence 99999995 344555332 33568899999887 66743 45679999999877655211 1000000000000
Q ss_pred eeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCC---c-
Q 001989 400 LRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPF---F- 475 (985)
Q Consensus 400 ~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~---~- 475 (985)
+ + ..++..+...+|.|. ....++.+++ ..+..++++++.++..++++++.+.|+++| ++++.+.. .
T Consensus 246 ~---~-~~~~~~~~~~~~~~~---~~~~a~~~al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~ 315 (396)
T 2ch1_A 246 Y---W-GCYDEPKRYHHTVAS---NLIFALREAL--AQIAEEGLENQIKRRIECAQILYEGLGKMG-LDIFVKDPRHRLP 315 (396)
T ss_dssp H---T-TCSSSCCCCCCCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHHT-CCBSSCSGGGBCT
T ss_pred h---h-hhhcccCCCCCCCcH---HHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHCC-CeeccCCccccCC
Confidence 0 0 000011122344443 2333333443 444456889999999999999999999886 88764321 1
Q ss_pred ceEEEecC-C--HHHHHHHHHHc-Cceeeee----cCCeEEEEec-cCCCHHHHHHHHHHHhC
Q 001989 476 DTVKVKCA-D--AHAIASAAYKI-EMNLRVV----DSNTVTASFD-ETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 476 ~~~~~~~~-~--~~~v~~~L~~~-GI~~~~~----~~~~lris~t-~~~t~edId~li~aL~~ 529 (985)
..+.+..+ + ..++.++|.++ ||.+... .++.+|++++ ..+|++|+++++++|.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~ 378 (396)
T 2ch1_A 316 TVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKE 378 (396)
T ss_dssp TEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHH
Confidence 23556665 2 88899999875 9988642 3578999994 56789999999999974
No 115
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.82 E-value=3.2e-19 Score=205.94 Aligned_cols=302 Identities=15% Similarity=0.113 Sum_probs=200.1
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--ccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--SFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+++.+++.+.+|.+ ... ++.++|++|+..++.++. .++++|+++...|..+...++..|+++
T Consensus 79 ~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~ 150 (409)
T 2gb3_A 79 AGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA--------NPGDEILVLEPFYANYNAFAKIAGVKL 150 (409)
T ss_dssp TCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTHHHHHHHHHTCEE
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHcCCEE
Confidence 454555555555555555543 333 555667777755544331 367899998888877777778889999
Q ss_pred EEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEcccccccc-C-CC
Q 001989 705 VSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQV-G-LT 777 (985)
Q Consensus 705 v~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~-~-l~ 777 (985)
+.+|.++ ++.+ +++|+++++ +++++|++++|+ ++|.+. .++++|.++|+++|+++++|+++..... + ..
T Consensus 151 ~~v~~~~~~~~~~-~~~l~~~l~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~ 226 (409)
T 2gb3_A 151 IPVTRRMEEGFAI-PQNLESFIN---ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFA 226 (409)
T ss_dssp EEEECCGGGTSCC-CTTGGGGCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCC
T ss_pred EEeccCCCCCCcc-HHHHHHhhC---cCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCC
Confidence 9999875 3344 888988886 689999999985 689874 2589999999999999999999853211 1 00
Q ss_pred C--CCccCCcEEEeCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHH
Q 001989 778 S--PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 778 ~--pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
. .+..+.|+++.|+||+|+.| |.++|++++++ ++.+.+..... ..+ +.+ .....
T Consensus 227 ~~~~~~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~l~~~l~~~~~------------~~~---~~~----~~~~~ 283 (409)
T 2gb3_A 227 SALSIESDKVVVIDSVSKKFSAC----GARVGCLITRNEELISHAMKLAQ------------GRL---APP----LLEQI 283 (409)
T ss_dssp CGGGSCCTTEEEEEESTTTTTCG----GGCCEEEECSCHHHHHHHHHHHH------------HSC---CCC----HHHHH
T ss_pred CccccCCCCEEEEecchhccCCc----cceEEEEEECcHHHHHHHHHHHh------------ccC---CCC----HHHHH
Confidence 1 11135799999999998532 44589999988 76654421100 011 111 12222
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC---
Q 001989 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY--- 930 (985)
Q Consensus 855 ~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~--- 930 (985)
++.++|.. +.+++++..++..++++++.+.|++ ++.+.. .+.+..+ +.+.++ +.+..++.++|.++
T Consensus 284 a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~--~~~~~~------~~~~~~l~~~l~~~~~~ 353 (409)
T 2gb3_A 284 GSVGLLNL-DDSFFDFVRETYRERVETVLKKLEEHGLKRFT-KPSGAFY--ITAELP------VEDAEEFARWMLTDFNM 353 (409)
T ss_dssp HHHHHHTC-CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBC-CCSBSSE--EEEECS------SSCHHHHHHHHHHSCCB
T ss_pred HHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHcCceeee-CCCeeEE--EEEEeC------CCCHHHHHHHHHhcccc
Confidence 23333432 4666777777888899999999987 444411 2222222 234543 35688999999987
Q ss_pred ---CCccCCC-CCC-----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccCC
Q 001989 931 ---GFHGPTM-SWP-----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMGR 978 (985)
Q Consensus 931 ---Gi~~~~~-~~p-----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~~ 978 (985)
||.+... .+. ..+.+||+++ ++++||++ +++.|++++++++.+|
T Consensus 354 ~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~~--~~~~l~~~l~~~~~~~ 406 (409)
T 2gb3_A 354 DGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLSR--AIDVLMEGLKMFCSSR 406 (409)
T ss_dssp TTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHHH--HHHHHHHHHHHHHC--
T ss_pred ccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHHH--HHHHHHHHHHHhhhcc
Confidence 9987532 121 1478999998 89999999 8899999998887654
No 116
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.82 E-value=2.9e-18 Score=198.37 Aligned_cols=297 Identities=18% Similarity=0.127 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--h
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--K 289 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--~ 289 (985)
...++++.+|+++|.+ ++.++++||.+++.++.++ + ++||+|+++...|+++...+...++..|++++.++. +
T Consensus 57 ~~~~l~~~la~~~g~~--~~~~~~~gt~a~~~al~~l-~--~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 131 (412)
T 2cb1_A 57 TAKALEERLKALEGAL--EAVVLASGQAATFAALLAL-L--RPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPEPE 131 (412)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTT-C--CTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSSHH
T ss_pred HHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHH-h--CCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCHH
Confidence 3566888999999987 5788899997777666554 2 378999999999999999887666678999999875 6
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCcccc-CCCCCCcccceEEEecC-ccccccCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALT-ILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg-~l~~~~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
+|++ ++++|++|++++| |.+|.+.|+++|+++||++|+++++| +.++.+ ....+.++|+|++++|. |.|++|
T Consensus 132 ~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D-~~~~~~~~~~~~~~~~~di~~~S~~K~~~~~--- 207 (412)
T 2cb1_A 132 AVREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVD-NTFGAAGALCRPLAWGAHVVVESLTKWASGH--- 207 (412)
T ss_dssp HHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEE-CGGGTTTTSCCGGGGTCSEEEEETTTTTTCS---
T ss_pred HHHHHhccCCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEE-CCCccccccCCccccCCeEEEECCcccccCC---
Confidence 7777 8889999999988 78999999999999999999999995 344544 44455678999999998 777654
Q ss_pred CCCcEEEEEEchhhH-----hcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCc
Q 001989 366 GGPHAAFLATSQEYK-----RMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGP 440 (985)
Q Consensus 366 GGP~~G~l~~~~~~~-----~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~ 440 (985)
|++-.|+++.++++. ..-++...|.... ..| ..+.-.+..| .++.+..+. .+.+..+ ++.+.+.
T Consensus 208 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~--~~~~~~~~~r--~~~~~~~g~-~~~~~~a--~~~~~~l 276 (412)
T 2cb1_A 208 GSVLGGAVLSRETELWRNYPQFLQPDLKGQIPW----EAL--RARCFPERVR--TLGLSLCGM-ALSPFNA--YLLFQGL 276 (412)
T ss_dssp SCCCCEEEEECCCSGGGGSGGGGCC-------H----HHH--GGGHHHHHHH--HHHTTTTCC-CCCHHHH--HHHHHHG
T ss_pred CCcEEEEEEeccccccccccccccccccccchh----hcc--chHHHHHHHH--HHHHHhcCC-CCChHHh--HHHHcCC
Confidence 222234554443321 1111211221000 000 0000001111 122122111 0111111 1233334
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCeEEc-CC----------------CCcceEEEecCCHHHHHHHHHHcCceeeee-
Q 001989 441 EGLKTIAQRVHGLAGTFALGLKKLGTVEVQ-GL----------------PFFDTVKVKCADAHAIASAAYKIEMNLRVV- 502 (985)
Q Consensus 441 ~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~-~~----------------~~~~~~~~~~~~~~~v~~~L~~~GI~~~~~- 502 (985)
+.+++..++..++++++.+.|.+..++.++ .+ .....+.|.+.+.+++.+.|.+.||.+ ..
T Consensus 277 ~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~~~~~~~~~~l~~~~i~~-~~s 355 (412)
T 2cb1_A 277 ETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDLGDLERASRFLGAIRLLK-AAN 355 (412)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEECSSHHHHHHHHHHCSSEE-CSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEeCCHHHHHHHHHhCCeee-ecc
Confidence 556667777788999999999987447643 11 122356777723778888888889875 21
Q ss_pred -----------------------------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 -----------------------------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -----------------------------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++.||+|++.++|+++||+|+++|..
T Consensus 356 ~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 356 LGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp CSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred cCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 147899999999999999999999974
No 117
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.81 E-value=1.5e-19 Score=207.73 Aligned_cols=302 Identities=17% Similarity=0.185 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH-H--HHHCC--cEEE
Q 001989 631 QEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA-T--AAMCG--MKIV 705 (985)
Q Consensus 631 ~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~-~--a~~~G--~~vv 705 (985)
.++.+++++++++++|.+...+++++|++|++.++.++. .++++|+++...|+.+.. . ....| ++++
T Consensus 68 ~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~~~a~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~ 139 (405)
T 2vi8_A 68 DIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVL--------EHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFV 139 (405)
T ss_dssp HHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------CTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEE
T ss_pred HHHHHHHHHHHHHHhCCCceEEEecCcHHHHHHHHHHhc--------CCCCEEEEecccccchhcccchhhhccceeEEE
Confidence 344445778999999998766667788877755544431 367899999888887643 1 12333 4888
Q ss_pred EEcCC-CCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-CCCc-c
Q 001989 706 SVGTD-AKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-SPGY-I 782 (985)
Q Consensus 706 ~v~~d-~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-~pg~-~ 782 (985)
.++++ .++.+|+++|++++++ .++++|++ +|+..|... |+++|.++|+++|+++|+|++|..+..+.. .+.. .
T Consensus 140 ~~~~~~~~~~~d~~~l~~~i~~--~~~~~v~~-~~~~~~~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~ 215 (405)
T 2vi8_A 140 AYGVDPETHVIDYDDVREKARL--HRPKLIVA-AAAAYPRII-DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVP 215 (405)
T ss_dssp EECBCTTTCSBCHHHHHHHHHH--HCCSEEEE-CCSSCCSCC-CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTT
T ss_pred ecccccccCCcCHHHHHHHHHh--cCCeEEEE-eCCCCCccC-CHHHHHHHHHHcCCEEEEEccccccccccCcCCCccc
Confidence 88875 4688999999999973 16777776 455557665 799999999999999999999864321111 1111 1
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
++|+++.|+||+|+ |++| |++++++++.+.+...... .. ..+. +...++++.+.+..
T Consensus 216 ~~di~~~s~sK~~~-----g~~g-G~~~~~~~~~~~l~~~~~~------------~~--~~~~---~~~~~aa~~~al~~ 272 (405)
T 2vi8_A 216 YAHFVTTTTHKTLR-----GPRG-GMILCQEQFAKQIDKAIFP------------GI--QGGP---LMHVIAAKAVAFGE 272 (405)
T ss_dssp TCSEEEEESSSTTC-----CCSC-EEEEECHHHHHHHHHHHTT------------TT--CSSC---CHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCC-----CCCC-eEEEEcHHHHHHHHhhhcc------------cc--cCCC---CHHHHHHHHHHHHH
Confidence 58999999999984 2335 9999987665433110000 00 0110 11112222344444
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC---
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS--- 938 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~--- 938 (985)
+..+++.+..++..++++++.+.|++ ++.+..+.. .. +.+.+.++. .+.+..++.+.|.++||.+....
T Consensus 273 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~~--~~~~~~~~~----~~~~~~~~~~~l~~~gi~v~~g~~~~ 345 (405)
T 2vi8_A 273 ALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGT-DN--HLLLVDLRP----QQLTGKTAEKVLDEVGITVNKNTIPY 345 (405)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC-SS--SEEEEECGG----GTCCHHHHHHHHHHHTEECEEECCTT
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhCCCeEecCCC-Cc--eEEEEEccC----CCCCHHHHHHHHHHcCceeccCcCcc
Confidence 43456777888889999999999987 444322111 11 224555541 14567889999999999875421
Q ss_pred ---CC-CCCEEEEeccC----CCCHHHHHHHHccCChhHHHHhhcc
Q 001989 939 ---WP-VPGTLMIEPTE----SESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 939 ---~p-~~~~lris~t~----~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.+ .++.+|++++. ..+++|+++ +++.|+++++++++
T Consensus 346 ~~~~~~~~~~iRis~~~~~~~~~~~~~i~~--~~~~l~~~~~~~~~ 389 (405)
T 2vi8_A 346 DPESPFVTSGIRIGTAAVTTRGFGLEEMDE--IAAIIGLVLKNVGS 389 (405)
T ss_dssp CSSCTTTCSEEEEECHHHHHTTCCHHHHHH--HHHHHHHHHTCTTC
T ss_pred ccCCCCCCCceEEeeeeeeecCCCHHHHHH--HHHHHHHHHhcccc
Confidence 12 24789999987 578999999 88889988877654
No 118
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.81 E-value=2.3e-19 Score=202.25 Aligned_cols=290 Identities=16% Similarity=0.163 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHHhCCCcc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH--HHHC--CcEEEEE
Q 001989 633 MFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT--AAMC--GMKIVSV 707 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~--a~~~--G~~vv~v 707 (985)
...++++++++++|. .. .+++++|++|++.++.+++ .++++|+++...|+..... +... |++++.+
T Consensus 44 ~~~~l~~~la~~~g~-~~~v~~~~~gt~a~~~al~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v 114 (356)
T 1v72_A 44 LTAQVKRKFCEIFER-DVEVFLVPTGTAANALCLSAMT--------PPWGNIYCHPASHINNDECGAPEFFSNGAKLMTV 114 (356)
T ss_dssp HHHHHHHHHHHHHTS-CCEEEEESCHHHHHHHHHHTSC--------CTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEEC
T ss_pred HHHHHHHHHHHHhCC-CCcEEEeCCccHHHHHHHHHhc--------CCCCEEEEcCccchhhhhchHHHHHhCCcEEEEe
Confidence 456889999999994 43 4667888887755544332 3678999998877654433 5555 9999999
Q ss_pred cCCCCCCCCHHHHHH-HHHhc----CCCEEEEEEEcCCCccc---cccCHHHHHHHHHHcCCEEEEEcccccc---ccCC
Q 001989 708 GTDAKGNINIEELRK-AAEAN----RDNLSTLMVTYPSTHGV---YEEGIDEICKIIHDNGGQVYMDGANMNA---QVGL 776 (985)
Q Consensus 708 ~~d~~g~iD~e~L~~-~i~~~----~~~t~~Vvv~~pn~~G~---i~~di~eI~~la~~~galliVD~a~~~~---~~~l 776 (985)
|.+ ++.+|+++|++ ++++. .+++++|++++|+.+|. .+ ++++|.++|+++|+++|+|+++... ..+.
T Consensus 115 ~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~tG~~~~~~-~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~ 192 (356)
T 1v72_A 115 DGP-AAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLD-EIEAIGDVCKSSSLGLHMDGSRFANALVSLGC 192 (356)
T ss_dssp CCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHH-HHHHHHHHHHHTTCEEEEEETTHHHHHHHHTC
T ss_pred cCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCCCCccCCHH-HHHHHHHHHHHcCCeEEEEchhhHhHhccCCC
Confidence 875 57899999999 88621 12689999999877898 44 7999999999999999999998421 1121
Q ss_pred CCCCc----cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 777 TSPGY----IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 777 ~~pg~----~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
.+.. .++|++++++||+ +.| .|.|++++++++.+.+... ... .+..... +.
T Consensus 193 -~~~~~~~~~~~d~~~~s~sK~-g~~-----~G~g~~~~~~~~~~~~~~~-~~~------------~~~~~~~--~~--- 247 (356)
T 1v72_A 193 -SPAEMTWKAGVDALSFGATKN-GVL-----AAEAIVLFNTSLATEMSYR-RKR------------AGHLSSK--MR--- 247 (356)
T ss_dssp -CTTTTTGGGTCCEEEECCGGG-TCS-----SCEEEEESSGGGHHHHHHH-HHH------------TTCCCSS--TH---
T ss_pred -CHHHhhhhhcCCEEEEecccC-CCc-----CccEEEEECHHHHhhHHHH-hhc------------cCchhhh--HH---
Confidence 2222 3689999999998 322 2557888887765443210 000 0111110 01
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
.++...+..+..+.+.+..++..++++++.+.|++..++....+.... .+.+.++ .++.++|.++||
T Consensus 248 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~--~~~~~~~----------~~~~~~l~~~gi 314 (356)
T 1v72_A 248 -FLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEAN--ILFCRLD----------SAMIDALLKAGF 314 (356)
T ss_dssp -HHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSS--EEEEEEC----------HHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCcc--EEEEEcC----------HHHHHHHHhcCe
Confidence 111223444544445555667788889999999762233221221222 2334432 378999999999
Q ss_pred ccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 933 HGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 933 ~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.+....++ .+.+|++++..+|++|+++ +++.|++++++.
T Consensus 315 ~v~~g~~~-~~~iRi~~~~~~~~~~i~~--~~~~l~~~l~~~ 353 (356)
T 1v72_A 315 GFYHDRWG-PNVVRFVTSFATTAEDVDH--LLNQVRLAADRT 353 (356)
T ss_dssp BCBCSSSS-TTEEEEECCTTCCHHHHHH--HHHHHHHTC---
T ss_pred EEeccccC-CCeEEEEecCCCCHHHHHH--HHHHHHHHHHhh
Confidence 87643344 5899999999999999999 778887776554
No 119
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.81 E-value=2.5e-19 Score=206.75 Aligned_cols=286 Identities=15% Similarity=0.104 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
..++++++++++|.+.. +++++|+++++.++.++. .++|+|+++...|+.+.......|++++.++.
T Consensus 106 ~~~l~~~la~~~g~~~~-i~~~sGt~a~~~~l~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~---- 172 (409)
T 3kki_A 106 KPMIEKRLAKFTGFDEC-LLSQSGWNANVGLLQTIC--------QPNTNVYIDFFAHMSLWEGARYANAQAHPFMH---- 172 (409)
T ss_dssp SCHHHHHHHHHHTCSEE-EEESCHHHHHHHHHHHHC--------CTTCEEEEETTSCHHHHHHHHHTTCEEEEECT----
T ss_pred HHHHHHHHHHHhCCCeE-EEecchHHHHHHHHHHhc--------CCCCEEEECCCcCHHHHHHHHHcCCeEEEecC----
Confidence 34788999999998764 556788877755544331 47899999999898887778889999988875
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CCC------CccCCc
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TSP------GYIGAD 785 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~~p------g~~g~D 785 (985)
+|+++|++++++ .++++|++++|+ ++|.+. |+++|.++|+++|+++++|++|..+..+. ..+ ...++|
T Consensus 173 -~d~~~le~~l~~--~~~~~vi~~~~~nptG~~~-~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~d 248 (409)
T 3kki_A 173 -NNCDHLRMLIQR--HGPGIIVVDSIYSTLGTIA-PLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVH 248 (409)
T ss_dssp -TCHHHHHHHHHH--HCSCEEEEESBCTTTCCBC-CHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCS
T ss_pred -CCHHHHHHHHHh--cCCeEEEECCCCCCCCCcC-CHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCC
Confidence 589999999984 246889999884 699998 89999999999999999999985322111 000 112579
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
+++.+++|+|+. + +|++++++++.+.+....... ..+. .. +...++++.+.+..+..
T Consensus 249 i~~~s~sK~~~~------~-gg~v~~~~~~~~~~~~~~~~~-----------~~~~-~~----~~~~~aa~~aal~~~~~ 305 (409)
T 3kki_A 249 FMTASLAKTFAY------R-AGAIWCNNEVNRCVPFISYPA-----------IFSS-TL----LPYEAAGLETTLEIIES 305 (409)
T ss_dssp EEEEESSSTTCS------S-CEEEEESSSGGGTHHHHCHHH-----------HHSB-CC----CHHHHHHHHHHHHHHHH
T ss_pred EEEeecchhhCC------C-ceEEEECHHHHHHHHHhCcCc-----------cccC-CC----cHHHHHHHHHHHHHHhc
Confidence 999999999842 2 489998887765442110000 0000 01 12223333344444432
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC----
Q 001989 866 KGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP---- 940 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p---- 940 (985)
. .+..++..++++++.+.|++ ++.+. + .+.. +.+.++. ..+..++.++|.++||.+....+|
T Consensus 306 ~--~~~~~~~~~~~~~l~~~L~~~g~~~~--~-~~~~---~~~~~~~-----~~~~~~~~~~L~~~Gv~v~~~~~~~~~~ 372 (409)
T 3kki_A 306 A--DNRRQHLDRMARKLRIGLSQLGLTIR--S-ESQI---IGLETGD-----ERNTEKVRDYLESNGVFGSVFCRPATSK 372 (409)
T ss_dssp C--HHHHHHHHHHHHHHHHHHHTTTCCCC--C-SSSE---EEEEEES-----HHHHHHHHHHHHHTTEECEEECTTSSCT
T ss_pred C--HHHHHHHHHHHHHHHHHHHHcCCccC--C-CCCE---EEEEeCC-----HHHHHHHHHHHHHCCceEeeeCCCCcCC
Confidence 2 45556678889999999987 55543 2 1222 3344431 124567999999999987543333
Q ss_pred CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 941 VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 941 ~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
..+.+||+++..+|++||++ +++.|++++++.
T Consensus 373 ~~~~iRi~~~~~~t~e~i~~--~~~~l~~~l~~~ 404 (409)
T 3kki_A 373 NKNIIRLSLNSDVNDEQIAK--IIEVCSDAVNYG 404 (409)
T ss_dssp TCEEEEEECCTTCCHHHHHH--HHHHHHHHHHHS
T ss_pred CCcEEEEEccCCCCHHHHHH--HHHHHHHHHhcC
Confidence 23789999999999999999 889999888764
No 120
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.81 E-value=5.3e-19 Score=200.99 Aligned_cols=289 Identities=11% Similarity=0.055 Sum_probs=190.3
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+++.+++.+.+|. +... ++.++|++|+..++.++. .++++|+++++.|..+...++..|+++
T Consensus 66 ~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~ 137 (370)
T 2z61_A 66 RGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSII--------DDGDEVLIQNPCYPCYKNFIRFLGAKP 137 (370)
T ss_dssp TCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSCCTHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhc--------CCCCEEEEeCCCchhHHHHHHHcCCEE
Confidence 34445555555555555553 3333 555677777655444331 367899999888877777788899999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEcccccccc-C-CCCC--
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV-G-LTSP-- 779 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~-~-l~~p-- 779 (985)
+.+| +|+++|+++++ +++++|++++|+ ++|.+. |++ |.++|+++|+++++|+++..... + ....
T Consensus 138 ~~v~------~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~ 206 (370)
T 2z61_A 138 VFCD------FTVESLEEALS---DKTKAIIINSPSNPLGEVI-DRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIE 206 (370)
T ss_dssp EEEC------SSHHHHHHHCC---SSEEEEEEESSCTTTCCCC-CHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGG
T ss_pred EEeC------CCHHHHHHhcc---cCceEEEEcCCCCCcCccc-CHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHH
Confidence 9888 59999999997 689999999995 699998 788 99999999999999999853211 1 0111
Q ss_pred --CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHH
Q 001989 780 --GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISY 857 (985)
Q Consensus 780 --g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~ 857 (985)
+..+.|+++.|+||+|+.| |.++|++++++++.+.+.....+ .+.+. +.....++.
T Consensus 207 ~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~~~~~~~------------~~~~~------~~~~~~a~~ 264 (370)
T 2z61_A 207 FDENLEKTILINGFSKLYAMT----GWRIGYVISNDEIIEAILKLQQN------------LFISA------PTISQYAAL 264 (370)
T ss_dssp TCTTCSSEEEEEESTTTTTCG----GGCCEEEECCHHHHHHHHHHHHH------------HTSSS------CHHHHHHHG
T ss_pred ccCCCCcEEEEecChhccCCc----cceEEEEEECHHHHHHHHHHHhh------------cccCC------CHHHHHHHH
Confidence 1346789999999998532 45689999988766544211000 00111 112222222
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCCCccC
Q 001989 858 TYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYGFHGP 935 (985)
Q Consensus 858 a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~Gi~~~ 935 (985)
++|..++.+.+++..++..++++++.+.|++ ++.+. .+.+..+ +.+.++ + +..++.++|. ++||.+.
T Consensus 265 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~--~~~~~~------~-~~~~~~~~l~~~~gi~v~ 333 (370)
T 2z61_A 265 KAFEKETEREINSMIKEFDRRRRLVLKYVKDFGWEVN--NPIGAYY--VFPNIG------E-DGREFAYKLLKEKFVALT 333 (370)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCC--CCCBTTE--ECCBCS------S-CHHHHHHHHHHHHCEECE
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCeec--CCCcceE--EEEecC------C-CHHHHHHHHHHhCCEEEe
Confidence 3343323556667777788889999999987 44332 2222221 223443 2 6788999997 7899875
Q ss_pred CC-CCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 936 TM-SWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 936 ~~-~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.. .+. ..+++||+++ +++++|++ +++.|+++++
T Consensus 334 ~g~~f~~~~~~~~Ri~~~--~~~~~i~~--~~~~l~~~l~ 369 (370)
T 2z61_A 334 PGIGFGSKGKNYIRISYA--NSYENIKE--GLERIKEFLN 369 (370)
T ss_dssp EGGGGCGGGSSBEEEECC--SCHHHHHH--HHHHHHHHHC
T ss_pred CchhhCCCCCCEEEEEEe--CCHHHHHH--HHHHHHHHHh
Confidence 32 222 2478999998 69999999 7777777654
No 121
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.81 E-value=4.9e-19 Score=203.05 Aligned_cols=293 Identities=12% Similarity=0.089 Sum_probs=193.6
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+++.+++.+.+|. +... ++.++|++|+..++.++. .++++|++++..|..+...++..|+++
T Consensus 78 ~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~ 149 (389)
T 1o4s_A 78 RGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALL--------DPGDEVIVFSPVWVSYIPQIILAGGTV 149 (389)
T ss_dssp TCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHcCCEE
Confidence 35555555566666665686 3334 445666666654444331 367899998888888888888899999
Q ss_pred EEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEcccccccc-C-CC
Q 001989 705 VSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQV-G-LT 777 (985)
Q Consensus 705 v~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~-~-l~ 777 (985)
+.+|.++ ++.+|+++|+++++ +++++|++++|+ ++|.+. .++++|.++|+++|+++++|+++..... + ..
T Consensus 150 ~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~ 226 (389)
T 1o4s_A 150 NVVETFMSKNFQPSLEEVEGLLV---GKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFT 226 (389)
T ss_dssp EEEECCGGGTTCCCHHHHHHTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCC
T ss_pred EEEecCCccCCCCCHHHHHHhcc---cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC
Confidence 9999875 46789999999997 689999999985 699985 1499999999999999999999853211 1 00
Q ss_pred CCC----ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 778 SPG----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 778 ~pg----~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
... ..+.|+++.|+||+|+.| |.++|++++++++.+.+.....+ .+.+.+ ....
T Consensus 227 ~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~l~~~~~~~~~l~~~~~~------------~~~~~~------~~~~ 284 (389)
T 1o4s_A 227 SILDVSEGFDRIVYINGFSKSHSMT----GWRVGYLISSEKVATAVSKIQSH------------TTSCIN------TVAQ 284 (389)
T ss_dssp CHHHHCSSSTTEEEEEESTTTTTCG----GGCCEEEECCHHHHHHHHHHHHH------------HTCSCC------HHHH
T ss_pred CHhhcCCCCCcEEEEeechhhcCCc----ccceEEEEeCHHHHHHHHHHhhh------------cccCCC------HHHH
Confidence 111 146799999999998532 45589999987765443211000 011111 1111
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCC
Q 001989 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYG 931 (985)
Q Consensus 854 ~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~G 931 (985)
.++.+ .+.. ++.+..++..++++++.+.|++ ++.+. .+.+..+ +.+.++ .+..++.++|. ++|
T Consensus 285 ~a~~~---~l~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~--~~~~~~-------~~~~~l~~~l~~~~g 349 (389)
T 1o4s_A 285 YAALK---ALEV-DNSYMVQTFKERKNFVVERLKKMGVKFV--EPEGAFY--LFFKVR-------GDDVKFCERLLEEKK 349 (389)
T ss_dssp HHHHH---HTTC-CCHHHHHHHHHHHHHHHHHHHHTTCCCC--CCSBSSE--EEEECS-------SCHHHHHHHHHHHHC
T ss_pred HHHHH---HHhc-cHHHHHHHHHHHHHHHHHHHHhcCCeee--cCCcceE--EEEeCC-------CCHHHHHHHHHHHCC
Confidence 22222 2322 3566667788889999999987 44442 2222222 234442 35788999997 889
Q ss_pred CccCCC-CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 932 FHGPTM-SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 932 i~~~~~-~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
|.+... .+..++++||+++ .++++|++ +++.|+++++
T Consensus 350 i~v~~g~~f~~~~~~Ris~~--~~~~~l~~--~l~~l~~~l~ 387 (389)
T 1o4s_A 350 VALVPGSAFLKPGFVRLSFA--TSIERLTE--ALDRIEDFLN 387 (389)
T ss_dssp EECEEGGGGTCTTEEEEECC--SCHHHHHH--HHHHHHHHHT
T ss_pred EEEeCchhcCCCCeEEEEEe--CCHHHHHH--HHHHHHHHHh
Confidence 987532 2333579999998 38999999 7677777654
No 122
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.81 E-value=2.8e-19 Score=205.62 Aligned_cols=292 Identities=20% Similarity=0.207 Sum_probs=194.5
Q ss_pred HHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH---HHHHHCCc--EEEEEcCCC
Q 001989 637 LGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP---ATAAMCGM--KIVSVGTDA 711 (985)
Q Consensus 637 ~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~---~~a~~~G~--~vv~v~~d~ 711 (985)
+++++++++|.+...+++++|++|+..++.++. .++++|++++..|+.+. ..++..|. ..+.+++++
T Consensus 74 ar~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 145 (407)
T 2dkj_A 74 AIERAKALFGAAWANVQPHSGSQANMAVYMALM--------EPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRP 145 (407)
T ss_dssp HHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------CTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCT
T ss_pred HHHHHHHHhCCCcceEEecchHHHHHHHHHHhc--------CCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCc
Confidence 456999999998766777788876655544331 36789999988887763 33344455 555555553
Q ss_pred -CCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC---CCCccCCcEE
Q 001989 712 -KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT---SPGYIGADVC 787 (985)
Q Consensus 712 -~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~---~pg~~g~Di~ 787 (985)
++.+|+++|++++++ +++++|++++|+. |.+. |+++|.++|+++|+++++|++|..+..... .+.. ..|++
T Consensus 146 ~~~~~d~~~l~~~l~~--~~~~~v~~~~p~~-~~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~ 220 (407)
T 2dkj_A 146 DTELIDLEEVRRLALE--HRPKVIVAGASAY-PRFW-DFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLP-YAHVV 220 (407)
T ss_dssp TTSSCCHHHHHHHHHH--HCCSEEEECCSSC-CSCC-CHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTT-TCSEE
T ss_pred ccCccCHHHHHHHHhh--cCCeEEEEecccc-CCCC-CHHHHHHHHHHcCCEEEEEccccccccccCccCCccc-cccEE
Confidence 578999999999972 2678888877764 5666 899999999999999999999864332111 1112 37999
Q ss_pred EeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
+.|+||++ +||.+|+++++ +++.+.+...... ..++. . +...++++.+.+..+..+
T Consensus 221 ~~s~sK~l------~g~~~G~~~~~~~~~~~~l~~~~~~-----------~~~~~-~-----~~~~~~a~~~al~~~~~~ 277 (407)
T 2dkj_A 221 TSTTHKTL------RGPRGGLILSNDPELGKRIDKLIFP-----------GIQGG-P-----LEHVIAGKAVAFFEALQP 277 (407)
T ss_dssp EEESSGGG------CCCSCEEEEESCHHHHHHHHHHHTT-----------TTCSS-C-----CHHHHHHHHHHHHHHHSH
T ss_pred EEeccccC------CCCCceEEEECCHHHHHHHHhhhcc-----------cccCC-C-----cHHHHHHHHHHHHHHHHh
Confidence 99999987 35656999998 5665443211000 00111 1 111122233445544345
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC------
Q 001989 867 GLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW------ 939 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~------ 939 (985)
++.+..++..++++++.+.|++ ++++... +... +.+.+.++. .+.+..++.+.|.++||.+.....
T Consensus 278 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~--~~~~~~~~~----~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~ 350 (407)
T 2dkj_A 278 EFKEYSRLVVENAKRLAEELARRGYRIVTG-GTDN--HLFLVDLRP----KGLTGKEAEERLDAVGITVNKNAIPFDPKP 350 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEGGG-SCSS--SEEEEECGG----GTCCHHHHHHHHHHTTEECEECCCTTCSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCceeecC-CCCc--eEEEEECcc----cCCCHHHHHHHHHHcCceecCCcCcccccc
Confidence 6778888888999999999987 4443211 1112 224455541 135688999999999998754221
Q ss_pred C-CCCEEEEeccCC----CCHHHHHHHHccCChhHHHHh
Q 001989 940 P-VPGTLMIEPTES----ESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 940 p-~~~~lris~t~~----~t~eeId~~~~~~~l~~~~~~ 973 (985)
+ .++.+|++++.. .|++|+++ +++.|++++++
T Consensus 351 ~~~~~~iRis~~~~~~~~~~~~~i~~--~~~~l~~~~~~ 387 (407)
T 2dkj_A 351 PRVTSGIRIGTPAITTRGFTPEEMPL--VAELIDRALLE 387 (407)
T ss_dssp TTTCSEEEEECHHHHHTTCCGGGHHH--HHHHHHHHHHH
T ss_pred ccCCCceeeecccccccCCCHHHHHH--HHHHHHHHHhc
Confidence 1 257899999764 89999999 88888888876
No 123
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.81 E-value=1.8e-18 Score=198.58 Aligned_cols=299 Identities=13% Similarity=0.160 Sum_probs=197.2
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCC-CEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHR-NVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~-~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
.|..++.+++.+++.+.+|. +... ++.++|++|+..++.++. .++ ++|+++.+.|..+...++..|++
T Consensus 76 ~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~--------~~g~d~vl~~~p~~~~~~~~~~~~g~~ 147 (398)
T 3ele_A 76 QGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALT--------SDAYDEFITIAPYFPEYKVFVNAAGAR 147 (398)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC--------CSTTCEEEEESSCCTHHHHHHHHTTCE
T ss_pred CCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHc--------CCCCCEEEEeCCCchhhHHHHHHcCCE
Confidence 46667777788888888884 3334 455666766654444331 367 89999888887777778889999
Q ss_pred EEEEcCCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHH------cCCEEEEEcccccc
Q 001989 704 IVSVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHD------NGGQVYMDGANMNA 772 (985)
Q Consensus 704 vv~v~~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~------~galliVD~a~~~~ 772 (985)
++.+|+++ ++.+|+++|+++++ +++++|++++| |++|.+. + +++|+++|++ +|+++++|+++...
T Consensus 148 ~~~v~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~ 223 (398)
T 3ele_A 148 LVEVPADTEHFQIDFDALEERIN---AHTRGVIINSPNNPSGTVY-SEETIKKLSDLLEKKSKEIGRPIFIIADEPYREI 223 (398)
T ss_dssp EEEECCCTTTSSCCHHHHHHTCC---TTEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTC
T ss_pred EEEEecCCcCCcCCHHHHHHHhC---cCCCEEEEcCCCCCCCCCC-CHHHHHHHHHHHHhhhhccCCCeEEEEecccccc
Confidence 99999975 46899999999997 78999999998 4699986 4 7888899999 99999999998521
Q ss_pred c-cC--CCC-CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCC--CCccccCCCCCCCCCCCCCCCCCCcc
Q 001989 773 Q-VG--LTS-PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP--SHPVVSTGGIPAPEKSQPLGTIAAAP 846 (985)
Q Consensus 773 ~-~~--l~~-pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp--~~~~g~~~~~~~~~~~~~~~~i~s~~ 846 (985)
. .+ +.. ....+.++++.|++|+|+. .|.++|++++++++..... ...... ....+..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~-- 288 (398)
T 3ele_A 224 VYDGIKVPFVTKYYDNTLVCYSYSKSLSL----PGERIGYVLVPDEVYDKAELYAAVCGA---------GRALGYVCA-- 288 (398)
T ss_dssp BCTTCCCCCGGGTCSSEEEEEESTTTSSC----TTTCCEEEECCTTSTTHHHHHHHHHHH---------HHHTTCCCS--
T ss_pred ccCCCCcCChHhhcCCeEEEEehhhcCCC----ccceeEEEEEcchhhhHHHHHHHHHHH---------hhhccccCC--
Confidence 1 11 111 1234567889999999854 3678999998876543210 000000 000011111
Q ss_pred hhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHH
Q 001989 847 WGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAK 925 (985)
Q Consensus 847 ~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~ 925 (985)
+.....++...+. ... ..++..++++++.+.|++ ++.+. .+.+..+ +.+.++ +.+..++.+
T Consensus 289 --~~~~~~a~~~~l~---~~~---~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~--~~~~~~------~~~~~~~~~ 350 (398)
T 3ele_A 289 --PSLFQKMIVKCQG---ATG---DINAYKENRDLLYEGLTRIGYHCF--KPDGAFY--MFVKAL------EDDSNAFCE 350 (398)
T ss_dssp --CHHHHHHHTTCTT---CCC---CHHHHHHHHHHHHHHHHHHTCCEE--CCSBSSE--EEEECS------SSCHHHHHH
T ss_pred --CHHHHHHHHHHhc---CHH---HHHHHHHHHHHHHHHHHHcCCeec--CCCeeEE--EEEEcC------CCCHHHHHH
Confidence 1111111111221 111 234566778889888886 55543 2222222 345554 346889999
Q ss_pred HHHHCCCccCCC-CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 926 RLMDYGFHGPTM-SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 926 ~L~~~Gi~~~~~-~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.|.++||.+... .+..++++||+++ +++|||++ +++.|++++++++
T Consensus 351 ~l~~~gi~v~~g~~~~~~~~iRis~~--~~~e~i~~--~l~~l~~~l~~~~ 397 (398)
T 3ele_A 351 KAKEEDVLIVAADGFGCPGWVRISYC--VDREMIKH--SMPAFEKIYKKYN 397 (398)
T ss_dssp HHHTTTEECEESGGGTCTTEEEEECC--SCHHHHHH--HHHHHHHHHHHHC
T ss_pred HHHHCCEEEeCccccCCCCeEEEEec--CCHHHHHH--HHHHHHHHHHHhh
Confidence 999999987542 2333589999996 69999999 8899999888765
No 124
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.81 E-value=3.6e-19 Score=205.56 Aligned_cols=304 Identities=13% Similarity=0.037 Sum_probs=197.0
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--cc-c-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--SF-S-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~~-~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+++.+++.+.+|.+ .. . ++.++|++|+..++.++. .++++|+++...|..+...++..|++
T Consensus 62 ~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~--------~~gd~Vl~~~~~y~~~~~~~~~~g~~ 133 (411)
T 2o0r_A 62 PGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLV--------EPGSEVLLIEPFYDSYSPVVAMAGAH 133 (411)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhc--------CCCCEEEEeCCCcHhHHHHHHHcCCE
Confidence 455566666777777777853 33 4 444556666654443331 36789999888888877778889999
Q ss_pred EEEEcCCCC---CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cC-
Q 001989 704 IVSVGTDAK---GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VG- 775 (985)
Q Consensus 704 vv~v~~d~~---g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~- 775 (985)
++.+|++++ +.+|+++|+++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++++|+++.... .+
T Consensus 134 ~~~v~~~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~ 210 (411)
T 2o0r_A 134 RVTVPLVPDGRGFALDADALRRAVT---PRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHA 210 (411)
T ss_dssp EEEEECEEETTEEECCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC
T ss_pred EEEeeccccccCCCCCHHHHHHhhc---cCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC
Confidence 999998653 5699999999997 78999999998 57998851 46999999999999999999985321 11
Q ss_pred -CCCC----CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhh
Q 001989 776 -LTSP----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 776 -l~~p----g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~ 850 (985)
.... +..+.|+++.|+||+|+.| |.++|++++++++.+.+...... .+.+.+ ...+
T Consensus 211 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~~~~~~------------~~~~~~--~~~~- 271 (411)
T 2o0r_A 211 RHLPLAGFDGMAERTITISSAAKMFNCT----GWKIGWACGPAELIAGVRAAKQY------------LSYVGG--APFQ- 271 (411)
T ss_dssp CCCCGGGSTTTGGGEEEEEEHHHHTTCT----TTCEEEEECCHHHHHHHHHHHHH------------HTSCCC--TTHH-
T ss_pred CCcChhhccCCCCCEEEEeechhhcCCc----cceEEEEeeCHHHHHHHHHHHhh------------ccCCCC--hHHH-
Confidence 0011 1246799999999998532 45599999987765543211000 000111 1111
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-
Q 001989 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM- 928 (985)
Q Consensus 851 ~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~- 928 (985)
.++.++|.. +.+.+.+..++..++++++.+.|++ ++.+. .+.+..+ +.++++.. .+.+..++.++|.
T Consensus 272 ---~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~g~~--~~~~~~~~---~~~~~~~~~~~l~~ 340 (411)
T 2o0r_A 272 ---PAVALALDT-EDAWVAALRNSLRARRDRLAAGLTEIGFAVH--DSYGTYF--LCADPRPL---GYDDSTEFCAALPE 340 (411)
T ss_dssp ---HHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHTCEEC--CCCBSSE--EEEECGGG---TCCCHHHHHHHHHH
T ss_pred ---HHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHHcCCEec--CCCeeEE--EEEecCCC---CCCCHHHHHHHHHH
Confidence 222334443 3566777777888899999999987 44432 2222222 34555410 0246788999886
Q ss_pred HCCCccCCC-CC-C------------CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 929 DYGFHGPTM-SW-P------------VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 929 ~~Gi~~~~~-~~-p------------~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
++||.+... .+ + ..+++||++. ++++||++ +++.|++++++.+.
T Consensus 341 ~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~~--~~~~l~~~~~~~~~ 398 (411)
T 2o0r_A 341 KVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLDE--AIRRLSVLAERPAT 398 (411)
T ss_dssp HHSEECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHHH--HHHHHGGGGC----
T ss_pred hCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHHH--HHHHHHHHHhccCc
Confidence 579986431 12 1 2468999986 48999999 77888777665543
No 125
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.81 E-value=3.3e-19 Score=204.40 Aligned_cols=301 Identities=12% Similarity=0.070 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC-CC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD-AK 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d-~~ 712 (985)
..++++.+++++|.+. .+++++|++|++.++.+++ ..++++|+++...|..+...+...|++++.++++ ++
T Consensus 58 ~~~l~~~la~~~~~~~-~i~~~~gt~al~~~l~~~~-------~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 129 (391)
T 3dr4_A 58 IVEFEKAFADYCGVKH-AIACNNGTTALHLALVAMG-------IGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRT 129 (391)
T ss_dssp HHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHT-------CCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHhCCCc-EEEeCCHHHHHHHHHHHcC-------CCCcCEEEECCCchHHHHHHHHHCCCEEEEEecCccc
Confidence 5688899999999874 4566788887765555431 2467899999998888877788899999999998 46
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-CCCccCCcEEEeC-
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-SPGYIGADVCHLN- 790 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-~pg~~g~Di~~~s- 790 (985)
+.+|+++|+++++ +++++|++++ ++|.+. |+++|.++|+++|+++++|++|..+..... ..+.+ .|+.++|
T Consensus 130 ~~~d~~~l~~~~~---~~~~~v~~~n--~tG~~~-~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~-~di~~~S~ 202 (391)
T 3dr4_A 130 FNLDAAKLEALIT---PRTKAIMPVH--LYGQIC-DMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSL-GDCATFSF 202 (391)
T ss_dssp CSBCGGGSGGGCC---TTEEEECCBC--GGGCCC-CHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SSEEEEEC
T ss_pred cCcCHHHHHHhcC---CCceEEEEEC--CCCChh-hHHHHHHHHHHcCCEEEEECcccccceECCeeeccc-CCEEEEEC
Confidence 8899999999987 7899888654 679988 899999999999999999999864322111 11222 3666666
Q ss_pred -CcccccccCCCCCCceEEEEEccc-ccCcCCCC-ccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 791 -LHKTFCIPHGGGGPGMGPIGVKKH-LAPFLPSH-PVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 791 -~hK~l~~p~g~GGPg~G~i~~~~~-l~~~lp~~-~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.||+++ |+.+|+++++++ +.+.+... ..|.+.+. .+.......+.. .....+ +.. ....++
T Consensus 203 s~~K~l~------~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~g~~~~----~~~l~a--a~~---~~~~~~ 266 (391)
T 3dr4_A 203 FGNAIIT------TGEGGMITTNDDDLAAKMRLLRGQGMDPNR-RYWFPIVGFNYR----MTNIQA--AIG---LAQLER 266 (391)
T ss_dssp BTTSSSC------CBSCEEEEESCHHHHHHHHHHHBTTCCTTS-TTCCSSCCCBCB----CCHHHH--HHH---HHHHHT
T ss_pred CCCCcCC------cCCeEEEEECCHHHHHHHHHHHhcCCCCCC-cccccccccccC----CCHHHH--HHH---HHHHHH
Confidence 668873 234677776643 43222100 00111000 000000000111 111211 111 222345
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-cCCeeec--CC-CCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC---
Q 001989 868 LTEASKIAILNANYMAKRLEK-HYPILFR--GV-NGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP--- 940 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~-g~~l~~~--~~-~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p--- 940 (985)
+.+..++..++++++.+.|++ ++.+... .. ....++.+.+.++. ..+.+..++.+.|.++||.+.....|
T Consensus 267 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~l~~~L~~~GI~v~~~~~p~~~ 343 (391)
T 3dr4_A 267 VDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGE---GLSTTRDQVIKDLDALGIESRPVFHPMHI 343 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTTSEECCCCCTTSCCCCSSEEEEECS---SCSSCHHHHHHHHHHTTCCCEECCCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCccccCcCCCCCCcceeEEEEEEECC---ccchhHHHHHHHHHHCCCceeecCCcccc
Confidence 666777788889999999987 4544322 11 11222234455431 11467899999999999987532111
Q ss_pred ------------------CCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 941 ------------------VPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 941 ------------------~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
....+|++++..+|+||||+ ++++|+++
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~--~~~~l~~~ 389 (391)
T 3dr4_A 344 MPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDR--VIAALDQV 389 (391)
T ss_dssp SGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHH--HHHHHHTT
T ss_pred ChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHH--HHHHHHHH
Confidence 13579999999999999999 66766654
No 126
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.81 E-value=7.2e-19 Score=201.12 Aligned_cols=296 Identities=10% Similarity=0.074 Sum_probs=194.8
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--cc-c-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--SF-S-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~~-~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+++.+++.+.+|.+ .. . ++.++|++++..++.++. .++++|+++++.|..+...++..|++
T Consensus 67 ~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~~ 138 (386)
T 1u08_A 67 TGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALV--------RNGDEVICFDPSYDSYAPAIALSGGI 138 (386)
T ss_dssp TCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhC--------CCCCEEEEeCCCchhHHHHHHHcCCE
Confidence 455566666777777777853 33 3 455666666654444331 36789999888888887778889999
Q ss_pred EEEEcCCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEcccccc-ccCC--
Q 001989 704 IVSVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNA-QVGL-- 776 (985)
Q Consensus 704 vv~v~~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~-~~~l-- 776 (985)
++.+|+++ ++.+|+++|+++++ +++++|++++|+ ++|.+.+ ++++|.++|+++|+++++|+++... ..+-
T Consensus 139 ~~~v~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~ 215 (386)
T 1u08_A 139 VKRMALQPPHFRVDWQEFAALLS---ERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGH 215 (386)
T ss_dssp EEEEECCTTTCCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCC
T ss_pred EEEeecCcccCcCCHHHHHHhhc---ccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCC
Confidence 99999876 47899999999997 789999999984 6898862 4799999999999999999998531 1110
Q ss_pred CCC----CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 777 TSP----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 777 ~~p----g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
... +..+.|+++.|+||+|+.| |.++|++++++++.+.+...... .+.+. +...
T Consensus 216 ~~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~~~~~~------------~~~~~------~~~~ 273 (386)
T 1u08_A 216 ASVLAHPQLRERAVAVSSFGKTYHMT----GWKVGYCVAPAPISAEIRKVHQY------------LTFSV------NTPA 273 (386)
T ss_dssp CCGGGSHHHHTTEEEEEEHHHHTTCG----GGCCEEEECCHHHHHHHHHHHHH------------HTSSC------CHHH
T ss_pred cChhcccCccCcEEEEecchhhcCCc----ccceEEEEcCHHHHHHHHHHHHh------------hccCC------ChHH
Confidence 011 1346899999999998532 45589999987765543211000 00011 1112
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HC
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DY 930 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~ 930 (985)
..++.++|... .+.+++..++..++++++.+.|++ ++.+. .+.+..+ +.++++.. .+.+..++.++|. ++
T Consensus 274 ~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~g~~--~~~~~~~~---~~~~~~~~~~~l~~~~ 345 (386)
T 1u08_A 274 QLALADMLRAE-PEHYLALPDFYRQKRDILVNALNESRLEIL--PCEGTYF--LLVDYSAV---STLDDVEFCQWLTQEH 345 (386)
T ss_dssp HHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSSSCEEC--CCCBSSE--EEEECTTT---CCSCHHHHHHHHHHHS
T ss_pred HHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHCCCeec--CCCceEE--EEEecCCC---CCCCHHHHHHHHHHhC
Confidence 22233444432 456677777788899999999987 44332 2222222 34555410 0146788999886 68
Q ss_pred CCccCCC-CCC----CCCEEEEeccCCCCHHHHHHHHccCChh
Q 001989 931 GFHGPTM-SWP----VPGTLMIEPTESESKSWTGIVMLSSPSE 968 (985)
Q Consensus 931 Gi~~~~~-~~p----~~~~lris~t~~~t~eeId~~~~~~~l~ 968 (985)
||.+... .+. .++.+||+++ ++++||++ +++.|+
T Consensus 346 gi~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~~--~~~~l~ 384 (386)
T 1u08_A 346 GVAAIPLSVFCADPFPHKLIRLCFA--KKESTLLA--AAERLR 384 (386)
T ss_dssp CEECEEGGGGCSSCCCSCEEEEECC--SCHHHHHH--HHHHHT
T ss_pred CEEEeCchHhCCCCCCCCEEEEEEc--CCHHHHHH--HHHHHh
Confidence 9987532 121 2478999997 48999999 545443
No 127
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.81 E-value=4.6e-18 Score=198.43 Aligned_cols=291 Identities=12% Similarity=0.122 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHH-hcCCCCC-CEEEEc-CCCCcccHHHHHHCC---------
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHK-ARGDHHR-NVCIIP-VSAHGTNPATAAMCG--------- 701 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~-~~g~~~~-~~IIv~-~~~Hg~~~~~a~~~G--------- 701 (985)
..++++.+++++|.+. .++.+||++|+++++.+++.|.. .+|..++ ++||+. ..+|+.........|
T Consensus 120 ~~~l~~~la~~~g~~~-v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~ 198 (439)
T 2oat_A 120 LGEYEEYITKLFNYHK-VLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFG 198 (439)
T ss_dssp HHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSC
T ss_pred HHHHHHHHHHhcCCCE-EEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCC
Confidence 4578889999998654 46678899999888887775532 1222233 678775 477887766555444
Q ss_pred ---cEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc---cCHHHHHHHHHHcCCEEEEEcccccccc
Q 001989 702 ---MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE---EGIDEICKIIHDNGGQVYMDGANMNAQV 774 (985)
Q Consensus 702 ---~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~---~di~eI~~la~~~galliVD~a~~~~~~ 774 (985)
.+++.+|.+ |+++|+++++ ++++++|+++.. +.+|++. .++++|.++|+++|+++|+|++|. +++
T Consensus 199 p~~~~v~~~~~~-----d~~~le~~l~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-g~g 270 (439)
T 2oat_A 199 PFMPGFDIIPYN-----DLPALERALQ--DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQT-GLA 270 (439)
T ss_dssp SCCTTEEEECSS-----CHHHHHHHTT--STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTT
T ss_pred CCCCCeEEeCCC-----CHHHHHHHhC--CCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCc
Confidence 467777763 8999999994 267887776543 3478653 169999999999999999999983 332
Q ss_pred CCCCC---C--ccCCcEEEeCCcccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 775 GLTSP---G--YIGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 775 ~l~~p---g--~~g~Di~~~s~hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
-.... . ...+|++++ +|+|+ || ..+|++++++++.+.+.....+ +++.+
T Consensus 271 ~~g~~~~~~~~~~~~Di~t~--sK~l~-----~G~~~~G~v~~~~~~~~~l~~~~~~------------------~t~~~ 325 (439)
T 2oat_A 271 RTGRWLAVDYENVRPDIVLL--GKALS-----GGLYPVSAVLCDDDIMLTIKPGEHG------------------STYGG 325 (439)
T ss_dssp TTSSSSGGGGGTCCCSEEEE--CGGGG-----TTSSCCEEEEECHHHHTTSCTTSSC------------------CSSTT
T ss_pred cCCcchhHHHhCCCCcEEEe--ccccc-----CCCCCeEEEEECHHHHhccCCCCcc------------------cCCCc
Confidence 11111 1 124698754 59874 34 4588999998876655321000 01223
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCee--ecCCCCceeeEEEEEecCccccCCCCHHHHHH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAK 925 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~ 925 (985)
++..++++.+.+..+..++ ..++..++++++.++|++ ++++. ..+ .+.+ +.+.++. ..+.+..++.+
T Consensus 326 ~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~~-~g~~---~~v~l~~---~~~~~~~~l~~ 395 (439)
T 2oat_A 326 NPLGCRVAIAALEVLEEEN---LAENADKLGIILRNELMKLPSDVVTAVRG-KGLL---NAIVIKE---TKDWDAWKVCL 395 (439)
T ss_dssp CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHTTSCTTTEEEEEE-ETTE---EEEEECC---CSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHhcCCCcEEEEe-eeeE---EEEEEec---CccHHHHHHHH
Confidence 4455555666777665543 345677888999999987 34331 111 1222 3345431 00135788999
Q ss_pred HHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 926 RLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 926 ~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+|.++|+.+.... .+.+|++++..+|++|||+ ++++|++++++
T Consensus 396 ~l~~~Gv~v~~~~---~~~iRi~~~~~~t~e~i~~--~l~~l~~~l~~ 438 (439)
T 2oat_A 396 RLRDNGLLAKPTH---GDIIRFAPPLVIKEDELRE--SIEIINKTILS 438 (439)
T ss_dssp HHHHTTEECCBSS---SSEEEECCCTTCCHHHHHH--HHHHHHHHHHT
T ss_pred HHHHCCeEEecCC---CCEEEEECccCCCHHHHHH--HHHHHHHHHHh
Confidence 9999999886432 4799999999999999999 77888887754
No 128
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.80 E-value=7.1e-19 Score=215.55 Aligned_cols=315 Identities=14% Similarity=0.093 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH-HHHCCcEEEEEcCCC
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT-AAMCGMKIVSVGTDA 711 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~-a~~~G~~vv~v~~d~ 711 (985)
.+.++++.+|+++|.+...++.+++++++.++++++. .+||+||++...|.++... +.+.|++++.++.+.
T Consensus 174 ~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~--------~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~ 245 (730)
T 1c4k_A 174 PAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALV--------SNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNR 245 (730)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhc--------CCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCc
Confidence 3678999999999998765555555566655555432 4789999999989877766 778899999887643
Q ss_pred C-----CCCCHHHH-----HHHHHhcCCC---E----EEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEcccccc--
Q 001989 712 K-----GNINIEEL-----RKAAEANRDN---L----STLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNA-- 772 (985)
Q Consensus 712 ~-----g~iD~e~L-----~~~i~~~~~~---t----~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~-- 772 (985)
+ |.+|+++| +++|++..++ + ++|++++||++|.+. |+++|+++||++|++++||+||...
T Consensus 246 ~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn~~G~v~-dl~~I~~la~~~g~~livDeAh~~~~~ 324 (730)
T 1c4k_A 246 NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIY-NAHEVVKRIGHLCDYIEFDSAWVGYEQ 324 (730)
T ss_dssp CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEE-CHHHHHHHHGGGBSEEEEECTTCCGGG
T ss_pred cccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCCCCCeec-CHHHHHHHHHHcCCeEEEEcccccccc
Confidence 2 34788888 8888732011 4 889999999999998 8999999999999999999998532
Q ss_pred ccCC---CCCC---ccCCc----EEEeCCcccccccCCCCCC-ceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCC
Q 001989 773 QVGL---TSPG---YIGAD----VCHLNLHKTFCIPHGGGGP-GMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGT 841 (985)
Q Consensus 773 ~~~l---~~pg---~~g~D----i~~~s~hK~l~~p~g~GGP-g~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~ 841 (985)
.++. ..+. .+|+| +++.|+||+| +|| ++|+++++++.... +...+... ..+.......+.
T Consensus 325 f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L------~g~~~gg~I~v~~~~l~g-~~~~i~~~--~~~~~~~~~~st 395 (730)
T 1c4k_A 325 FIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ------AGFSQTSQIHKKDSHIKG-QLRYCDHK--HFNNSFNLFMST 395 (730)
T ss_dssp SSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHS------SCCTTCEEEEEECGGGTT-STTCCCHH--HHHHHHHHHSCS
T ss_pred cCcccCCcCcccccccCCCCCCEEEEECCCCCC------CCCCCEEEEEecchhhcC-cccccCHH--HHHHHHHHhCCC
Confidence 1110 0122 34788 9999999997 355 56788777654311 00111000 000000000001
Q ss_pred CCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc---cCCeeecCC---------------------
Q 001989 842 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---HYPILFRGV--------------------- 897 (985)
Q Consensus 842 i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~---g~~l~~~~~--------------------- 897 (985)
.. + +....++. +++..+..++-.+..++..+++++++++|++ ++.+..+..
T Consensus 396 sp-~-~~~iaal~---aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~ 470 (730)
T 1c4k_A 396 SP-F-YPMYAALD---VNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYW 470 (730)
T ss_dssp SC-C-HHHHHHHH---HHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGG
T ss_pred CC-c-HHHHHHHH---HHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhh
Confidence 11 1 11111122 2334444432345567788899999999976 333311100
Q ss_pred ---------------CCcee-eE--EEEEecCcc------ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCC
Q 001989 898 ---------------NGTVA-HE--FIVDLRGLK------NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESE 953 (985)
Q Consensus 898 ---------------~~~~~-~~--~iv~~~~~~------~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~ 953 (985)
.+..+ .. +.+..+++. ...|+++.++.+.|.++||.+.... .+.+|++++..+
T Consensus 471 ~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~~---~~~ir~~~s~g~ 547 (730)
T 1c4k_A 471 RFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSD---LNSILFLMTPAE 547 (730)
T ss_dssp BCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEEC---SSEEEEECCTTC
T ss_pred ccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEECC---CCeEEEEeCCCC
Confidence 00000 00 345443110 1236788999999999999886443 378999999999
Q ss_pred CHHHHHHHHccCChhHHHHhhc
Q 001989 954 SKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 954 t~eeId~~~~~~~l~~~~~~~~ 975 (985)
|++|+++ ++++|+++.+.+.
T Consensus 548 t~e~i~~--Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 548 TPAKMNN--LITQLLQLQRLIE 567 (730)
T ss_dssp CHHHHHH--HHHHHHHHHHHHH
T ss_pred CHHHHHH--HHHHHHHHHHhcc
Confidence 9999999 7788888876654
No 129
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.80 E-value=2.9e-18 Score=201.95 Aligned_cols=302 Identities=15% Similarity=0.185 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc--------
Q 001989 633 MFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM-------- 702 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~-------- 702 (985)
...++++.++++++.+. ..++.+||++|+++++++++.|...+|..++++||+ ...+||.........|.
T Consensus 100 ~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~ 179 (472)
T 3hmu_A 100 PAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSG 179 (472)
T ss_dssp HHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccC
Confidence 45678899999987544 346778999999999999988766666445677776 56788877655443321
Q ss_pred ---EEEEEcCCC-----CCCCC--------HHHHHHHHHhcC-CCEEEEEEEcCC-CccccccC----HHHHHHHHHHcC
Q 001989 703 ---KIVSVGTDA-----KGNIN--------IEELRKAAEANR-DNLSTLMVTYPS-THGVYEEG----IDEICKIIHDNG 760 (985)
Q Consensus 703 ---~vv~v~~d~-----~g~iD--------~e~L~~~i~~~~-~~t~~Vvv~~pn-~~G~i~~d----i~eI~~la~~~g 760 (985)
.++.++... ++ .| +++|+++|++.. +++++|+++.++ ..|++. + +++|.++|+++|
T Consensus 180 ~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~-~~~~~l~~l~~l~~~~g 257 (472)
T 3hmu_A 180 LIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIV-APDSYWPEIQRICDKYD 257 (472)
T ss_dssp CCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBC-CCTTHHHHHHHHHHHTT
T ss_pred CCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCccc-CCHHHHHHHHHHHHHcC
Confidence 344555422 11 34 889999987433 467777776554 567765 5 999999999999
Q ss_pred CEEEEEccccccccCCCCCCcc--------CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCC
Q 001989 761 GQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPA 832 (985)
Q Consensus 761 alliVD~a~~~~~~~l~~pg~~--------g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~ 832 (985)
++||+|+++. ++.+.|.+ .+|+++++ |++ ++||..+|++++++++.+.+....+.
T Consensus 258 illI~DEv~~----gfgr~G~~~a~~~~~v~pdi~t~s--K~l----~gg~~plG~v~~~~~i~~~~~~~~~~------- 320 (472)
T 3hmu_A 258 ILLIADEVIC----GFGRTGNWFGTQTMGIRPHIMTIA--KGL----SSGYAPIGGSIVCDEVAHVIGKDEFN------- 320 (472)
T ss_dssp CEEEEECTTT----TTTTTSSSCHHHHHTCCCSEEEEC--GGG----TTTSSCCEEEEEEHHHHHHHTTSCBC-------
T ss_pred CEEEEEcccc----CCcccCccchhHHhCCCCceeeec--hhh----hcCCcceEEEEECHHHHHhcccCCcc-------
Confidence 9999999873 23333322 36888764 876 34557788898888776655211100
Q ss_pred CCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHH-HHHHHHHHHhhcc--CCee--ecCCCCceeeEEEE
Q 001989 833 PEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAI-LNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIV 907 (985)
Q Consensus 833 ~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~-~~a~~l~~~L~~g--~~l~--~~~~~~~~~~~~iv 907 (985)
..+++.+++++++++.+.|..+..+.+ .++.. ++.++++++|++. +..+ +.+ .+. + +.+
T Consensus 321 ---------~~~t~~~np~a~aAa~aaL~~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~-~G~-~--~~i 384 (472)
T 3hmu_A 321 ---------HGYTYSGHPVAAAVALENLRILEEENI---LDHVRNVAAPYLKEKWEALTDHPLVGEAKI-VGM-M--ASI 384 (472)
T ss_dssp ---------CCCTTTTCHHHHHHHHHHHHHHHHTTH---HHHHHHTHHHHHHHHHHGGGGSTTEEEEEE-ETT-E--EEE
T ss_pred ---------ccCCCCCCHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-cCc-e--EEE
Confidence 001223355666667777776655443 44566 6778888888652 2211 111 112 1 223
Q ss_pred EecCcccc-C------CCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 908 DLRGLKNT-A------GIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 908 ~~~~~~~~-~------g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+..-... . .....++.+.|.++|+.+.... +.+||+|+..+|++|||+ ++++|+++++++.
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g----~~iRi~p~~~~t~e~i~~--~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 385 ALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVG----DRMIISPPLVITPAEIDE--MFVRIRKSLDEAQ 453 (472)
T ss_dssp EECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEET----TEEEECCCTTCCHHHHHH--HHHHHHHHHHHHH
T ss_pred EEecCccccccccchhHHHHHHHHHHHHHCCcEEEecC----CEEEEECCCCCCHHHHHH--HHHHHHHHHHHHH
Confidence 33210000 0 0015678999999999876442 799999999999999999 7788888876643
No 130
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.80 E-value=6.8e-19 Score=204.39 Aligned_cols=304 Identities=12% Similarity=0.034 Sum_probs=197.6
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Ccc-c-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSF-S-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~-~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+++.+++.+.+|. +.. . ++.++|++|+..++.++. .++++|+++.+.|..+...++..|++
T Consensus 77 ~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~Vl~~~p~y~~~~~~~~~~g~~ 148 (429)
T 1yiz_A 77 FGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHV--------DEGDEVIIIEPFFDCYEPMVKAAGGI 148 (429)
T ss_dssp SCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCE
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhc--------CCCCEEEEcCCCchhHHHHHHHcCCE
Confidence 45556666667777776784 333 4 445666666654444331 36789999888777777778889999
Q ss_pred EEEEcCCC----------CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEcccc
Q 001989 704 IVSVGTDA----------KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANM 770 (985)
Q Consensus 704 vv~v~~d~----------~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~ 770 (985)
++.+|.++ ++.+|+++|+++++ +++++|++++| |++|.+.+ ++++|.++|+++|+++|+|+++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~ 225 (429)
T 1yiz_A 149 PRFIPLKPNKTGGTISSADWVLDNNELEALFN---EKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYE 225 (429)
T ss_dssp EEEEECBCCCSSSSEEGGGCBCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred EEEEeCCcccccccccccCcccCHHHHHHHhc---cCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEecccc
Confidence 99999865 35799999999997 78999999998 46898862 49999999999999999999985
Q ss_pred cc-ccC-----CC-CCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCC
Q 001989 771 NA-QVG-----LT-SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIA 843 (985)
Q Consensus 771 ~~-~~~-----l~-~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~ 843 (985)
.. ..+ +. .++..+.|+++.|+||+|+.| |.++|++++++++.+.+.... . ..+.+.
T Consensus 226 ~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~~~~-~-----------~~~~~~- 288 (429)
T 1yiz_A 226 HMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLT----GWKIGWAYGPEALLKNLQMVH-Q-----------NCVYTC- 288 (429)
T ss_dssp TCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCG----GGCCEEEESCHHHHHHHHHHH-H-----------TTTCCC-
T ss_pred ccccCCCCCcChhhccCCcCceEEEecchhccCCC----CcceEEEEeCHHHHHHHHHHH-h-----------hcccCC-
Confidence 21 111 10 112456899999999998532 445899999877655432100 0 001111
Q ss_pred CcchhhhHHHHHHHHHHHHh----c--HHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccc--
Q 001989 844 AAPWGSALILPISYTYIAMM----G--SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKN-- 914 (985)
Q Consensus 844 s~~~g~~~~~~~a~a~l~~l----g--~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~-- 914 (985)
+.....++.++|... + .+.+.+..++..++++++.+.|++ ++.+. .+.+..+ +.++++....
T Consensus 289 -----~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~g~~--~~~~~~~~~~~~ 359 (429)
T 1yiz_A 289 -----ATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPT--VPQGGYF--MVADWSSLDSKV 359 (429)
T ss_dssp -----CHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHTCEEE--ECSBSSE--EEEECCSSCTTT
T ss_pred -----ChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc--CCCcceE--EEEEcccccccc
Confidence 112222334445541 3 345666667778888999999987 44432 2222222 3455542100
Q ss_pred -----cCCCCHHHHHHHHH-HCCCccCCC-CCC-------CCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 915 -----TAGIEPEDVAKRLM-DYGFHGPTM-SWP-------VPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 915 -----~~g~~~~~v~~~L~-~~Gi~~~~~-~~p-------~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
....+..+++++|. ++||.+... .+. ..+++||++. ++++||++ +++.|+++++
T Consensus 360 ~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~i~~--~l~~l~~~l~ 427 (429)
T 1yiz_A 360 DLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KKDENLQK--AAEILRKWKG 427 (429)
T ss_dssp TCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC--SCHHHHHH--HHHHHHHHSC
T ss_pred cccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec--CCHHHHHH--HHHHHHHhcc
Confidence 00034678888886 789987542 221 1479999998 48999999 7777776653
No 131
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.80 E-value=6.4e-18 Score=193.48 Aligned_cols=313 Identities=14% Similarity=0.102 Sum_probs=213.6
Q ss_pred CCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCc-ceeeccchHHHHHHHHHHhhhhcCCCC
Q 001989 178 THVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMS-NASLLDEGTAAAEAMAMCNNIQKGKKK 256 (985)
Q Consensus 178 ~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~-~~sl~~~~ta~~ea~~~a~~~~~~~g~ 256 (985)
...|+.+.+++.+. ... .|.+. ..+...++++.+++++|.++. ++.+++|+|.++++++.++ . ++||
T Consensus 43 ~~~~~~v~~a~~~~---~~~--~~~~~----~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~-~--~~gd 110 (393)
T 1vjo_A 43 SNAHPSVLQAMNVS---PVG--HLDPA----FLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANA-V--EPGD 110 (393)
T ss_dssp CCCCHHHHHHHSSC---CCC--TTSHH----HHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH-C--CTTC
T ss_pred CCCCHHHHHHHhcc---ccc--ccCHH----HHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhc-c--CCCC
Confidence 35677776554432 111 23222 346677888999999999877 8999999998888777665 2 3789
Q ss_pred EEEEcCCCChh--HHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHH
Q 001989 257 TFIIASNCHPQ--TIDICITRADGFDIKVVVSDL--------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAH 323 (985)
Q Consensus 257 ~Vlv~~~~H~s--~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~-~t~~V~v~~p-n~~G~v~di~~I~~~a~ 323 (985)
+|++++..|++ +...++ ..|++++.++. ++|++ +++ ++++|++++| |++|.+.|+++|.++|+
T Consensus 111 ~Vl~~~~~~~~~~~~~~~~----~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~ 186 (393)
T 1vjo_A 111 VVLIGVAGYFGNRLVDMAG----RYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCR 186 (393)
T ss_dssp EEEEEESSHHHHHHHHHHH----HTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHH
T ss_pred EEEEEcCChhHHHHHHHHH----HcCCceEEEecCCCCCCCHHHHHHHHhhCCceEEEEeccCCCcceeccHHHHHHHHH
Confidence 99999999998 655543 35778777653 45665 666 7899999988 88999999999999999
Q ss_pred hCCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCc---eeeeeecCCCCc
Q 001989 324 ANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGR---IVGVSIDSSGKP 398 (985)
Q Consensus 324 ~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~---~vG~t~d~~g~~ 398 (985)
++|+++++| +..++|... ....+++|+++++. |+|++| +++|++++++++++.+..+ +.+
T Consensus 187 ~~~~~li~D-ea~~~g~~~~~~~~~~~di~~~s~sK~l~~~-----~~~G~l~~~~~~~~~~~~~~~~~~~--------- 251 (393)
T 1vjo_A 187 EFGTLLLVD-TVTSLGGVPIFLDAWGVDLAYSCSQKGLGCS-----PGASPFTMSSRAIEKLQRRRTKVAN--------- 251 (393)
T ss_dssp HHTCEEEEE-CTTTTTTSCCCTTTTTCSEEECCSSSTTCSC-----SSCEEEEECHHHHHHHHTCSSCCSC---------
T ss_pred HcCCEEEEE-CCccccCcCCcccccCccEEEEcCcccccCC-----CceEEEEECHHHHHHHhccCCCCCc---------
Confidence 999999995 344555332 23567899999998 777643 2579999999887665111 101
Q ss_pred ceeeeccccc---ccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC--
Q 001989 399 ALRVAMQTRE---QHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-- 473 (985)
Q Consensus 399 ~~~l~l~tre---~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-- 473 (985)
+.+.+..+. .+.++..+|.|. ....++.+++ ..+..+|++++.++..++.+++.+.|+++| +++..+.
T Consensus 252 -~~~~~~~~~~~~~~~~~~~g~~~~---~~~~a~~~al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~ 324 (393)
T 1vjo_A 252 -WYLDMNLLGKYWGSERVYHHTAPI---NLYYALREAL--RLIAQEGLANCWQRHQKNVEYLWERLEDIG-LSLHVEKEY 324 (393)
T ss_dssp -STTCHHHHHHHHSTTCCCCSCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBSSCGGG
T ss_pred -eecCcHhhhhhhccCCCCCCCCCH---HHHHHHHHHH--HHHHHccHHHHHHHHHHHHHHHHHHHHHcC-CcccCCccc
Confidence 100000000 011122223333 2233333333 444455789999999999999999999986 8776432
Q ss_pred -CcceEEEecC-C--HHHHHHHHHHc-Cceeeee----cCCeEEEEec-cCCCHHHHHHHHHHHh
Q 001989 474 -FFDTVKVKCA-D--AHAIASAAYKI-EMNLRVV----DSNTVTASFD-ETTTLEDVDKLFIVFA 528 (985)
Q Consensus 474 -~~~~~~~~~~-~--~~~v~~~L~~~-GI~~~~~----~~~~lris~t-~~~t~edId~li~aL~ 528 (985)
..+.+.+..+ + ..++.+.|.++ ||.+... .++.+|+++. ..++++++++++++|.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~ 389 (393)
T 1vjo_A 325 RLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALE 389 (393)
T ss_dssp BCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHH
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHH
Confidence 1234556654 2 78899999987 9988542 2578999964 4567778999999986
No 132
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.80 E-value=1.3e-18 Score=199.36 Aligned_cols=352 Identities=11% Similarity=0.069 Sum_probs=214.0
Q ss_pred HHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccc-cCCCCchhhhhhHHHHHHHHHHHHHHHhCC--
Q 001989 571 HELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTITGF-- 647 (985)
Q Consensus 571 ~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~-~~p~~p~e~~~G~~~~~~e~~~~la~l~G~-- 647 (985)
.++.+..+++...+. .++.|+++.+.++...+..........+ ..-|.+ .+|..++.+++.+++.+.+|.
T Consensus 17 ~~~~~~~~~~~~~g~----~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~y~~---~~g~~~lr~~ia~~~~~~~g~~~ 89 (391)
T 3h14_A 17 MDVMEAARRAEEAGR----RIIHMEVGQPGTGAPRGAVEALAKSLETDALGYTV---ALGLPALRQRIARLYGEWYGVDL 89 (391)
T ss_dssp HHHHHHHHHHHHTTC----CCEECCCSSCSSCSCHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhcCC----CeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCC---CCChHHHHHHHHHHHHHHhCCCC
Confidence 455555666554442 3566776665554322211111000100 111221 245555666666666666674
Q ss_pred Cccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC--CCCCHHHHHHHH
Q 001989 648 DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK--GNINIEELRKAA 724 (985)
Q Consensus 648 ~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~--g~iD~e~L~~~i 724 (985)
+... ++.++|++|+..++.++. .++++|+++.+.|..+...++..|++++.+|++++ +.+|+++|+++
T Consensus 90 ~~~~v~~t~g~~~al~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~- 160 (391)
T 3h14_A 90 DPGRVVITPGSSGGFLLAFTALF--------DSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL- 160 (391)
T ss_dssp CGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS-
T ss_pred CHHHEEEecChHHHHHHHHHHhc--------CCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc-
Confidence 3333 555667776654444331 36789999888777777778889999999999764 46899988754
Q ss_pred HhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEcccccc-ccC-CCCCCc-cCCcEEEeCCccccccc
Q 001989 725 EANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNA-QVG-LTSPGY-IGADVCHLNLHKTFCIP 798 (985)
Q Consensus 725 ~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~-~~~-l~~pg~-~g~Di~~~s~hK~l~~p 798 (985)
++++|++++|+ ++|.+.+ ++++|+++|+++|+++|+|+++... ..+ ...... .+.++++.|++|+|+.
T Consensus 161 -----~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~- 234 (391)
T 3h14_A 161 -----DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSM- 234 (391)
T ss_dssp -----CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCC-
T ss_pred -----CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCC-
Confidence 57788999984 6999861 3899999999999999999998421 111 111112 2356888899999854
Q ss_pred CCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Q 001989 799 HGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILN 878 (985)
Q Consensus 799 ~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~ 878 (985)
.|.++|++++++++.+.+..... ..+.+. +.....++.+.+. +.+.+.+..++..++
T Consensus 235 ---~G~r~G~~~~~~~~~~~~~~~~~------------~~~~~~------~~~~~~a~~~~l~--~~~~~~~~~~~~~~~ 291 (391)
T 3h14_A 235 ---TGWRVGWMVVPEDQVRVVERIAQ------------NMFICA------PHASQVAALAALD--CDAELQANLDVYKAN 291 (391)
T ss_dssp ---TTSCCEEEECCGGGHHHHHHHHH------------HTTCCC------CHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred ---ccceeEEEEeCHHHHHHHHHHHh------------hhccCC------CHHHHHHHHHHhC--ChHHHHHHHHHHHHH
Confidence 36789999988776654421100 001111 1122222233343 566777777888888
Q ss_pred HHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC-CCccCCC-CCC---CCCEEEEeccCC
Q 001989 879 ANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY-GFHGPTM-SWP---VPGTLMIEPTES 952 (985)
Q Consensus 879 a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~-Gi~~~~~-~~p---~~~~lris~t~~ 952 (985)
++++.+.|++ ++..... +.+..+ +.+.++. .+.+..++.++|.++ ||.+... .+. ..+.+||++..
T Consensus 292 ~~~l~~~l~~~~~~~~~~-~~~~~~--~~~~~~~----~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~- 363 (391)
T 3h14_A 292 RKLMLERLPKAGFTRIAP-PDGAFY--VYADVSD----LTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR- 363 (391)
T ss_dssp HHHHHHHHHHHTCCCBCC-CCBTTE--EEEECTT----TCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS-
T ss_pred HHHHHHHHHHcCCCcccC-CCeeEE--EEEecCc----cCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC-
Confidence 9999999987 3332222 222222 3455541 145788999998775 9987532 121 24799999987
Q ss_pred CCHHHHHHHHccCChhHHHHhhccCC
Q 001989 953 ESKSWTGIVMLSSPSEKKLHRLKMGR 978 (985)
Q Consensus 953 ~t~eeId~~~~~~~l~~~~~~~~~~~ 978 (985)
+++||++ +++.|++++++....+
T Consensus 364 -~~~~i~~--~l~~l~~~~~~~~~~~ 386 (391)
T 3h14_A 364 -ATADIEE--GLDRLEAFMQARGEGH 386 (391)
T ss_dssp -CHHHHHH--HHHHHHHHHHHC----
T ss_pred -CHHHHHH--HHHHHHHHHHHhcccc
Confidence 7899999 8899999988766544
No 133
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.80 E-value=4.3e-20 Score=210.97 Aligned_cols=300 Identities=11% Similarity=-0.005 Sum_probs=190.3
Q ss_pred hHHHHHHHHHHHHHHHhCCCcc--cee-cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH--HHHCCcE
Q 001989 629 GYQEMFNNLGEWLCTITGFDSF--SLQ-PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT--AAMCGMK 703 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~--~~~-~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~--a~~~G~~ 703 (985)
.+.++++++++.+++++|.+.. .++ .++|++++. +++.++. .+++++++....|-++++. ++..| +
T Consensus 69 ~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n---~ai~~l~-----~~gd~v~~~~~~~~~~~~~~~a~~~G-~ 139 (386)
T 3qm2_A 69 EFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFA---GVPLNLL-----GDKTTADYVDAGYWAASAIKEAKKYC-A 139 (386)
T ss_dssp ----CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHH---HHHHHHC-----TTCCEEEEEESSHHHHHHHHHHTTTS-E
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHH---HHHHhcc-----CCCCeEEEEeCCHHHHHHHHHHHHhC-C
Confidence 4457788999999999999642 344 456776664 4444432 3567776544434355543 45678 9
Q ss_pred EEEEcCC--CCCC-CCHHHHHHHHHhcCCCEEEEEEEcC-CCcccc-ccCHHHHHHHHHHcCCEEEEEccccccccCCCC
Q 001989 704 IVSVGTD--AKGN-INIEELRKAAEANRDNLSTLMVTYP-STHGVY-EEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS 778 (985)
Q Consensus 704 vv~v~~d--~~g~-iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i-~~di~eI~~la~~~galliVD~a~~~~~~~l~~ 778 (985)
+++++++ ++|. +|+++++++++ ++|++|++++. |.+|++ + |+++|+ +|++++||++|+++...+ +
T Consensus 140 v~~v~~~~~~~G~~~~~~~~~~~l~---~~t~lV~~~h~et~tG~~i~-pi~~i~-----~g~~~~vDa~qs~g~~pi-d 209 (386)
T 3qm2_A 140 PQIIDAKITVDGKRAVKPMREWQLS---DNAAYLHYCPNETIDGIAID-ETPDFG-----PEVVVTADFSSTILSAPL-D 209 (386)
T ss_dssp EEEEECEEEETTEEEECCGGGCCCC---TTCSCEEECSEETTTTEECC-CCCCCC-----TTCCEEEECTTTTTSSCC-C
T ss_pred eEEEecCcccCCCCCCchHHHhhcC---CCCcEEEEECCcCCcCEecC-chhhhc-----CCCEEEEEcccccCCCCC-C
Confidence 9999987 5675 88888888776 88999988874 568995 8 899986 799999999997554433 3
Q ss_pred CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCC---ccccCCCCCCCCCCCCCCCCCCcchhhhHHHHH
Q 001989 779 PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSH---PVVSTGGIPAPEKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 779 pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~---~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~ 855 (985)
..++ |++++|+||++ |.||+|++++++++.+.+++. ++.... ........+|+++.. . .++.
T Consensus 210 v~~~--~~~~~s~hK~l------GP~G~g~l~v~~~~~~~~~~~~p~~~~~~~-~~~~~~~~gTp~v~~----i-~~l~- 274 (386)
T 3qm2_A 210 VSRY--GVIYAGAQKNI------GPAGLTLVIVREDLLGKAHESCPSILDYTV-LNDNDSMFNTPPTFA----W-YLSG- 274 (386)
T ss_dssp GGGC--SEEEEETTTTT------CCTTEEEEEEEGGGCSCCCTTSCGGGCHHH-HHHC-------CCSH----H-HHHH-
T ss_pred cccc--CEEEEeccccc------CCCccEEEEECHHHHhhhcccCCcHHHHHH-HhhcCCCCCCCcHHH----H-HHHH-
Confidence 4455 46779999998 346899999998876554321 110000 000001123444431 1 1222
Q ss_pred HHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHhhccCCeeec-CCCC-ceeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 856 SYTYIAMMGSK-GLTEASKIAILNANYMAKRLEKHYPILFR-GVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 856 a~a~l~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~g~~l~~~-~~~~-~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
++++.+..+ |+.++.++..+++++++++|++. ++... .+.. .....+.+.+++ .+.+ .++.+.|.++||
T Consensus 275 --~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~rs~~iv~f~~~~----~~~~-~~~~~~L~~~gI 346 (386)
T 3qm2_A 275 --LVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS-DFYRNDVAQANRSRMNVPFQLAD----NTLD-KVFLEESFAAGL 346 (386)
T ss_dssp --HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC-SSEECCBCGGGBCSSEEEEEESS----GGGH-HHHHHHHHHTTE
T ss_pred --HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCHHHcCceEEEEECCC----cccc-HHHHHHHHHCCC
Confidence 334555556 78888889999999999999872 32111 1111 111234455541 1234 577788999999
Q ss_pred ccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 933 HGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 933 ~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.+..-... .+++|+|+..++|+||||+ +++.|+++.++
T Consensus 347 ~~~~g~~~-~~~iRiS~~~~~t~edId~--l~~~l~~~~~~ 384 (386)
T 3qm2_A 347 HALKGHRV-VGGMRASIYNAMPIEGVKA--LTDFMIDFERR 384 (386)
T ss_dssp ECCBCCTT-TCSEEEECCTTSCHHHHHH--HHHHHHHHHHH
T ss_pred EEeCCCCC-cCeEEEEcCCCCCHHHHHH--HHHHHHHHHHh
Confidence 86432111 2579999999999999999 77888887654
No 134
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.80 E-value=4.4e-19 Score=199.96 Aligned_cols=293 Identities=12% Similarity=0.054 Sum_probs=194.9
Q ss_pred hHHHHHHHHHHHHHHHhCCCcc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH--HHHHCCcEEE
Q 001989 629 GYQEMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA--TAAMCGMKIV 705 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~--~a~~~G~~vv 705 (985)
|..+..+++++++++++|.+.. .++.++|++|++.++.+++ .++++|++++..|..+.. .++..|++++
T Consensus 46 g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~ 117 (359)
T 1svv_A 46 GQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL--------RPWEAVIATQLGHISTHETGAIEATGHKVV 117 (359)
T ss_dssp TCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHC--------CTTEEEEEETTSHHHHSSTTHHHHTTCCEE
T ss_pred cccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHh--------CCCCEEEEcccchHHHHHHHHHhcCCCeeE
Confidence 3345677899999999998764 3556778887765555442 367899999887765544 3677899999
Q ss_pred EEcCCCCCCCCHHHHHHHHHhc----CCCEEEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEEccc---cccccC
Q 001989 706 SVGTDAKGNINIEELRKAAEAN----RDNLSTLMVTYPSTHGVYEEG---IDEICKIIHDNGGQVYMDGAN---MNAQVG 775 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~----~~~t~~Vvv~~pn~~G~i~~d---i~eI~~la~~~galliVD~a~---~~~~~~ 775 (985)
.+|.+ ++.+|+++|++++++. .+++++|++++||++|.+. | +++|.++|+++|+++|+|++| ..+..+
T Consensus 118 ~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~~ptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~ 195 (359)
T 1svv_A 118 TAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQY-TKQELEDISASCKEHGLYLFLDGARLASALSSPV 195 (359)
T ss_dssp EECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCC-CHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTT
T ss_pred EEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcCCCCceec-CHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCC
Confidence 99986 7889999999999832 1138999999998899987 5 999999999999999999998 222211
Q ss_pred CCCCCc----cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 776 LTSPGY----IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 776 l~~pg~----~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
. .... .+.|++++++||+. +..+.|++++++++.+.+....... +.+.+ .+...
T Consensus 196 ~-~~~~~~~~~~~d~~~~s~~K~g------~~~~~g~l~~~~~~~~~~~~~~~~~-------------~~~~~--~~~~~ 253 (359)
T 1svv_A 196 N-DLTLADIARLTDMFYIGATKAG------GMFGEALIILNDALKPNARHLIKQR-------------GALMA--KGWLL 253 (359)
T ss_dssp C-CCCHHHHHHHCSEEEEECTTTT------CSSCEEEEECSGGGCTTHHHHHHHT-------------TCCCT--TTHHH
T ss_pred c-chhhhhhhhcCCEEEEecccCC------CCCceEEEEEcccHHHHHHHHHhcC-------------Ccccc--cchhh
Confidence 1 1121 36899999999963 2236789998887765442110000 00000 01111
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY 930 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~ 930 (985)
.+. + ...+..+++.+..++..++++++.+.|+. ++.+. ++.+..+ +.+.++ .++.++|.++
T Consensus 254 ~~~--~--~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~~~~--~~~~~~----------~~~~~~l~~~ 315 (359)
T 1svv_A 254 GIQ--F--EVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLA--WPSASNQ--LFPILE----------NTMIAELNND 315 (359)
T ss_dssp HHH--H--HHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCBS--SCCSSSE--ECBEEE----------HHHHHHHTTT
T ss_pred HHH--H--HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCeEEc--cCCccce--EEEEcC----------HHHHHHHHHh
Confidence 111 1 12344556777777888999999999943 44442 2222221 222321 4788999998
Q ss_pred -CCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 931 -GFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 931 -Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
||.+........+.+|++++..++++||++ +++.|++++++
T Consensus 316 ~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~--~~~~l~~~~~~ 357 (359)
T 1svv_A 316 FDMYTVEPLKDGTCIMRLCTSWATEEKECHR--FVEVLKRLVAS 357 (359)
T ss_dssp EECEEEEEETTTEEEEEEECCTTCCHHHHHH--HHHHHHHC---
T ss_pred cCEEEEecccCCCceEEEEccCcCCHHHHHH--HHHHHHHHHhc
Confidence 998722111124689999999999999999 77777776654
No 135
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.80 E-value=1.5e-18 Score=201.79 Aligned_cols=300 Identities=11% Similarity=0.061 Sum_probs=198.9
Q ss_pred HHHHHHHHHHhC-----CCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 635 NNLGEWLCTITG-----FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 635 ~e~~~~la~l~G-----~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
.++++.++++++ .+... ++.++|++|+..++.++. .++++|+++.+.|..+...++..|++++.+|
T Consensus 99 ~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~ 170 (427)
T 3dyd_A 99 LSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLA--------NPGQNILVPRPGFSLYKTLAESMGIEVKLYN 170 (427)
T ss_dssp HHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCTHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhc--------CCCCEEEEcCCCchhHHHHHHHcCCEEEEEe
Confidence 467788888887 44433 556677777755444332 3678999988878777777888999999998
Q ss_pred CCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEcccccc-ccC--CCCC
Q 001989 709 TDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNA-QVG--LTSP 779 (985)
Q Consensus 709 ~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~-~~~--l~~p 779 (985)
+++ ++.+|+++|+++++ +++++|++++| |++|.+. + +++|+++|+++|+++++|+++... ..+ +...
T Consensus 171 ~~~~~~~~~d~~~l~~~l~---~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~ 246 (427)
T 3dyd_A 171 LLPEKSWEIDLKQLEYLID---EKTACLIVNNPSNPCGSVF-SKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPL 246 (427)
T ss_dssp EEGGGTTEECHHHHHSSCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCG
T ss_pred cccccCCCCCHHHHHHHhc---cCCCEEEEECCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccH
Confidence 854 46789999999997 68999999999 5799987 7 999999999999999999998421 111 1111
Q ss_pred CccCCc---EEEeCCcccccccCCCCCCceEEEEEccc-------ccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 780 GYIGAD---VCHLNLHKTFCIPHGGGGPGMGPIGVKKH-------LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 780 g~~g~D---i~~~s~hK~l~~p~g~GGPg~G~i~~~~~-------l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
..++.| +++.|++|.|+. .|.++|++++++. +...+... . . .+.+ . +
T Consensus 247 ~~~~~~~~vi~~~S~sK~~~~----~G~riG~~~~~~~~~~~~~~i~~~l~~~--~---------~--~~~~--~----~ 303 (427)
T 3dyd_A 247 ATLSTDVPILSCGGLAKRWLV----PGWRLGWILIHDRRDIFGNEIRDGLVKL--S---------Q--RILG--P----C 303 (427)
T ss_dssp GGGCSSCCEEEEEESTTTSSC----GGGCCEEEEEECSTTSSHHHHHHHHHHH--H---------H--HHCC--S----C
T ss_pred HHhCCCCcEEEEeeccccCCC----cCcceEEEEecCcchhhHHHHHHHHHHH--H---------h--ccCC--C----C
Confidence 223333 667799998854 3567899998742 22111100 0 0 0001 1 1
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM- 928 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~- 928 (985)
.....++.++|.....+.+.+..++..++++++.+.|++...+....+.+..+ +.+.++......+.+..+++++|.
T Consensus 304 ~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~g~~--~~~~l~~~~~~~~~~~~~~~~~l~~ 381 (427)
T 3dyd_A 304 TIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMY--LMVGIEMEHFPEFENDVEFTERLVA 381 (427)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSBTTE--EEEEECGGGCTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEE--EEEecCHhhcCCCCCHHHHHHHHHH
Confidence 22233344555555567777888888889999999998632332222222222 223432100001346788898885
Q ss_pred HCCCccCCC-CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 929 DYGFHGPTM-SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 929 ~~Gi~~~~~-~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
++||.+... .+..++++||+++ +++++|++ +++.|++++++++
T Consensus 382 ~~gV~v~~g~~~~~~~~iRis~~--~~~e~i~~--~l~~l~~~l~~~~ 425 (427)
T 3dyd_A 382 EQSVHCLPATCFEYPNFIRVVIT--VPEVMMLE--ACSRIQEFCEQHY 425 (427)
T ss_dssp HHCEECEEGGGGTCTTEEEEESC--SCHHHHHH--HHHHHHHHHHHHC
T ss_pred HCCEEEECCcccCCCCeEEEEEC--CCHHHHHH--HHHHHHHHHHHhh
Confidence 789987532 2333589999986 78999999 8889999888765
No 136
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.80 E-value=1e-18 Score=202.70 Aligned_cols=299 Identities=13% Similarity=0.105 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHHHHhC--CCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEE
Q 001989 631 QEMFNNLGEWLCTITG--FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSV 707 (985)
Q Consensus 631 ~~~~~e~~~~la~l~G--~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v 707 (985)
.+..+++++++++.+| .+... ++.++|++|+++++.++. .++++||++.+.|..+...+...|.+++.+
T Consensus 99 ~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~--------~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~ 170 (421)
T 3l8a_A 99 DDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFS--------EKGDAVLINSPVYYPFARTIRLNDHRLVEN 170 (421)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS--------CTEEEEEEEESCCHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhc--------CCCCEEEECCCCcHHHHHHHHHCCCEEEec
Confidence 3566788889999988 44443 555677777765555432 367889998876766666677889999999
Q ss_pred cCC-CC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccc---ccCHHHHHHHHHHcCCEEEEEcccccc-ccCC--C
Q 001989 708 GTD-AK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVY---EEGIDEICKIIHDNGGQVYMDGANMNA-QVGL--T 777 (985)
Q Consensus 708 ~~d-~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i---~~di~eI~~la~~~galliVD~a~~~~-~~~l--~ 777 (985)
|++ .+ +.+|+++|++++++ +++++|++++| |++|.+ + ++++|+++|+++|+++|+|++|... ..+- .
T Consensus 171 ~~~~~~~~~~~d~~~le~~i~~--~~~~~vil~~p~nptG~~~~~~-~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~ 247 (421)
T 3l8a_A 171 SLQIINGRFEIDFEQLEKDIID--NNVKIYLLCSPHNPGGRVWDND-DLIKIAELCKKHGVILVSDEIHQDLALFGNTHH 247 (421)
T ss_dssp ECEEETTEEECCHHHHHHHHHH--TTEEEEEEESSBTTTTBCCCHH-HHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCC
T ss_pred cccccCCCeeeCHHHHHHHhhc--cCCeEEEECCCCCCCCCcCCHH-HHHHHHHHHHHcCCEEEEEccccccccCCCCCc
Confidence 985 33 36899999999973 58999999999 579988 5 7999999999999999999998421 1110 0
Q ss_pred -----CCCccCCcEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 778 -----SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 778 -----~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
.+...+.++.+.+++|+|+. +|.++|+++++ +++.+.+...... ..+.+ . +..
T Consensus 248 ~~~~~~~~~~~~~i~~~s~sK~~g~----~G~~~G~~~~~~~~l~~~~~~~~~~-----------~~~~~--~----n~~ 306 (421)
T 3l8a_A 248 SLNTLDASYKDFTIILSSATKTFNI----AGTKNSFAIIQNESLRRKFQYRQLA-----------NNQHE--V----PTV 306 (421)
T ss_dssp CGGGSCTTGGGTEEEEECSHHHHTC----GGGCCEEEECCSHHHHHHHHHHHHH-----------TTCSC--C----CHH
T ss_pred cHHHcCchhcCcEEEEEeChhhccC----chhheEeEEcCCHHHHHHHHHHHHh-----------cccCC--C----CHH
Confidence 01112455888999999954 35678999887 6665443211000 00111 1 223
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH-C
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD-Y 930 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~-~ 930 (985)
.+.++.+.+.. +.+.+.+..++..++++++.+.|++...+....+.+..+ ..++++. .+.+..++.++|.+ +
T Consensus 307 ~~~a~~aal~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~~~~~--~~v~~~~----~~~~~~~l~~~l~~~~ 379 (421)
T 3l8a_A 307 GMIATQAAFQY-GKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPEGTYL--VWLDFSA----YAIAQPQLSEKLQNEA 379 (421)
T ss_dssp HHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECCSBSSE--EEEECGG----GTCCTTHHHHHHHHTT
T ss_pred HHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCCCeeEE--EEEeccc----cCCCHHHHHHHHHHhC
Confidence 33334444443 455677777788889999999997632222222223222 2356541 13567789999975 5
Q ss_pred CCccCCC-CC--CCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 931 GFHGPTM-SW--PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 931 Gi~~~~~-~~--p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
||.+... .+ ...+.+||+++ +++++|++ +++.|+++++
T Consensus 380 gi~v~~g~~f~~~~~~~iRi~~~--~~~~~i~~--~l~~l~~~l~ 420 (421)
T 3l8a_A 380 KVVLNDGAHFGKEGKYFARLNVA--TPKNTVQE--ALSRIISVFG 420 (421)
T ss_dssp CEECEEGGGGCGGGTTEEEEECC--SCHHHHHH--HHHHHHHHC-
T ss_pred CEEEECchhhCCCCCCEEEEEec--CCHHHHHH--HHHHHHHHHh
Confidence 9987532 12 12589999998 68999999 7777777654
No 137
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.80 E-value=7.1e-19 Score=200.32 Aligned_cols=295 Identities=13% Similarity=0.050 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC-CC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD-AK 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d-~~ 712 (985)
..++++.+++++|.+. .+++++|++|+..++.++. ..++++|+++...|..+...++..|++++.++++ ++
T Consensus 38 ~~~l~~~la~~~~~~~-~i~~~sgt~al~~~l~~l~-------~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 109 (373)
T 3frk_A 38 DKKFEQEFADYCNVNY-CIGCGNGLDALHLILKGYD-------IGFGDEVIVPSNTFIATALAVSYTGAKPIFVEPDIRT 109 (373)
T ss_dssp HHHHHHHHHHHHTSSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEETTSCTHHHHHHHHHSCEEEEECEETTT
T ss_pred HHHHHHHHHHHhCCCe-EEEeCCHHHHHHHHHHHcC-------CCCcCEEEECCCCcHHHHHHHHHcCCEEEEEeccccc
Confidence 5688899999999874 4566788887755554331 2468899999998888777788889999999987 46
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC--CcEEEeC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG--ADVCHLN 790 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g--~Di~~~s 790 (985)
+.+|+++|+++++ +++++|++++ .+|... |+++|.++|+++|+++|+|++|..+.. + ....++ .|++++|
T Consensus 110 ~~~d~~~l~~~l~---~~~~~v~~~n--~~G~~~-~l~~i~~l~~~~~~~li~D~a~~~g~~-~-~~~~~~~~~d~~~~S 181 (373)
T 3frk_A 110 YNIDPSLIESAIT---EKTKAIIAVH--LYGQPA-DMDEIKRIAKKYNLKLIEDAAQAHGSL-Y-KGMKVGSLGDAAGFS 181 (373)
T ss_dssp TEECGGGTGGGCC---TTEEEEEEEC--CTTCCC-CHHHHHHHHHHHTCEEEEECTTCTTCE-E-TTEETTSSSSEEEEE
T ss_pred cCcCHHHHHHhcC---CCCeEEEEEC--CCcCcc-cHHHHHHHHHHcCCEEEEECCcccCCE-E-CCEeccccccEEEEe
Confidence 8899999999997 7899988665 579887 899999999999999999999864332 1 222334 7999988
Q ss_pred C--cccccccCCCCC-CceEEEEEcc-cccCcCCCC-ccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 791 L--HKTFCIPHGGGG-PGMGPIGVKK-HLAPFLPSH-PVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 791 ~--hK~l~~p~g~GG-Pg~G~i~~~~-~l~~~lp~~-~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
+ ||+++ | +.+|++++++ .+.+.+... ..|.... ... ...+ .+.. .... .++. .....
T Consensus 182 ~~~~K~l~------~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~-~~~-~~~g-~~~~----~~~~--~aa~---~~~~~ 243 (373)
T 3frk_A 182 FYPAKNLG------SLGDGGAVVTNDKDLAEKIKALSNYGSEKK-YHH-IYKG-FNSR----LDEL--QAGF---LRVKL 243 (373)
T ss_dssp CCTTSSSC------CSSSCEEEEESCHHHHHHHHHHHBTTCSBT-TBC-CSCC-CBCC----CCHH--HHHH---HHHHH
T ss_pred CcCCCccC------ccceeEEEEeCCHHHHHHHHHHHhcCcccC-Ccc-cccc-ccCC----CCHH--HHHH---HHHHH
Confidence 4 59873 3 2367777764 333222100 0010000 000 0000 0110 0111 1121 22223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeeecCC-CC--ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-CCC
Q 001989 866 KGLTEASKIAILNANYMAKRLEKHYPILFRGV-NG--TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-WPV 941 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~-~~--~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~p~ 941 (985)
+++.+..++..++++++.+.|++.. +..+.. .+ ..++.+.+.. .+.+++.+.|.++||.++... .|.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~gI~v~~~~~~~~ 314 (373)
T 3frk_A 244 KYLDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRS--------EKRDELQKYLNNNGIGTLIHYPIPI 314 (373)
T ss_dssp HTHHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEE--------SSHHHHHHHHHHTTBCCBCSCSSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEe--------CCHHHHHHHHHHCCCCcccCcCCcc
Confidence 4566667777888899999987622 322211 11 1122233332 257899999999999876322 110
Q ss_pred -----------------------CCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 942 -----------------------PGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 942 -----------------------~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.+.+|++++..+|++|||+ ++++|++...+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~--~~~~l~~~~~~ 367 (373)
T 3frk_A 315 HLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEY--VIDKINAWKLE 367 (373)
T ss_dssp GGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHH--HHHHHHTCC--
T ss_pred ccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHH--HHHHHHHHhhh
Confidence 1679999999999999999 77777665543
No 138
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.80 E-value=8e-19 Score=202.61 Aligned_cols=297 Identities=18% Similarity=0.159 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH---HHH--HCCcEEEEE
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA---TAA--MCGMKIVSV 707 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~---~a~--~~G~~vv~v 707 (985)
..+.+++++++++|.+...+.+++|++++++++.++. .++++|+++...|+.+.. ... ..++.++.+
T Consensus 77 ~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~~--------~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 148 (420)
T 3gbx_A 77 VEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALL--------QPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPY 148 (420)
T ss_dssp HHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------CTTCEEEEEEEC------------CHHHHSEEEEE
T ss_pred HHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHhc--------CCCCEEEecchhhcceeccchhhhhcccceeEEec
Confidence 3445668999999998777767888877765544331 478999998888876431 112 234566667
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEcccccccc--CCCCCCccCCc
Q 001989 708 GTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV--GLTSPGYIGAD 785 (985)
Q Consensus 708 ~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~--~l~~pg~~g~D 785 (985)
+.+.++.+|+++|++++++ .++++|++++|++ |... |+++|.++|+++|+++|+|++|..+.. +........+|
T Consensus 149 ~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~-~~~~-~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~d 224 (420)
T 3gbx_A 149 GIDESGKIDYDEMAKLAKE--HKPKMIIGGFSAY-SGVV-DWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAH 224 (420)
T ss_dssp EECTTCSCCHHHHHHHHHH--HCCSEEEECCTTC-CSCC-CHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTTTSS
T ss_pred cCCccCCcCHHHHHHHHHh--cCCeEEEEecCcc-CCcc-CHHHHHHHHHHcCCEEEEECCcchhceecccCCcccccCC
Confidence 7777789999999999983 2578888888875 4555 899999999999999999999853332 11011112389
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcc---cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKK---HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~---~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
+++.|+||+|+ ||.+|++++++ ++.+.+....+.. ..++.. ... ++++.+.+..
T Consensus 225 i~~~s~sK~~~------g~~gg~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~-----~~~-~~a~~~a~~~ 281 (420)
T 3gbx_A 225 VVTTTTHKTLA------GPRGGLILAKGGDEELYKKLNSAVFPS-----------AQGGPL-----MHV-IAGKAVALKE 281 (420)
T ss_dssp EEEEESSGGGC------SCSCEEEEESSCCHHHHHHHHHHHC---------------CCCC-----HHH-HHHHHHHHHH
T ss_pred EEEeecccCCC------CCCceEEEEcCCcHHHHHHhhhhcCCC-----------CCCCcc-----hhH-HHHHHHHHHH
Confidence 99999999983 56569999887 4444332111000 000100 111 1122223333
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC---
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS--- 938 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~--- 938 (985)
+..+++.++.++..++++++.+.|++ ++.+...+. . .+.+.+.++. .+.+...+.+.|.++||.+....
T Consensus 282 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~--~~~~~~~~~~----~~~~~~~~~~~l~~~gi~v~~~~~~~ 354 (420)
T 3gbx_A 282 AMEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGGT-E--NHLFLLDLVD----KNLTGKEADAALGRANITVNKNSVPN 354 (420)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC-S--SSEEEEECGG----GTCCHHHHHHHHHHTTEECEEECCTT
T ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHhcCCeeccCCC-C--CeEEEEEcCC----CCCCHHHHHHHHHHCCcEeccccCCC
Confidence 43456777788889999999999986 555432111 1 1224455431 24578889999999999875421
Q ss_pred ---CC-CCCEEEEeccCC----CCHHHHHHHHccCChhHHHHh
Q 001989 939 ---WP-VPGTLMIEPTES----ESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 939 ---~p-~~~~lris~t~~----~t~eeId~~~~~~~l~~~~~~ 973 (985)
.| .++.+||+++.. .+++||++ +++.|+++++.
T Consensus 355 ~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~--~~~~l~~~l~~ 395 (420)
T 3gbx_A 355 DPKSPFVTSGIRIGSPAVTRRGFKEAEVKE--LAGWMCDVLDN 395 (420)
T ss_dssp CSSCTTTCSEEEEECHHHHHTTCCHHHHHH--HHHHHHHHHHT
T ss_pred CccccCCCcceEEecchhcccCCCHHHHHH--HHHHHHHHHhC
Confidence 11 235699998754 56899999 77888877755
No 139
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.80 E-value=1e-18 Score=203.28 Aligned_cols=315 Identities=13% Similarity=0.105 Sum_probs=193.9
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--ccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCC--EEEEcCCCCcccHHHHHHCCc
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--SFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRN--VCIIPVSAHGTNPATAAMCGM 702 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~--~IIv~~~~Hg~~~~~a~~~G~ 702 (985)
.|..++.+.+.+++.+.+|.+ ... ++.++|++++..++.++. +..+++ +|+++.+.|..+...++..|+
T Consensus 82 ~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~------~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~ 155 (437)
T 3g0t_A 82 DGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVAN------RTHKNREYGTLFIDPGFNLNKLQCRILGQ 155 (437)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHT------TSCTTCSCCEEEEESCCHHHHHHHHHHTC
T ss_pred CChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHh------cCCCCCccEEEEeCCCcHhHHHHHHHcCC
Confidence 344444555555555555543 334 445566666644443331 003667 899988877666666788899
Q ss_pred EEEEEcCCCC-CCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEcccccc-ccCC-
Q 001989 703 KIVSVGTDAK-GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNA-QVGL- 776 (985)
Q Consensus 703 ~vv~v~~d~~-g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~-~~~l- 776 (985)
+++.+|++++ +.+|+++|+++++. +++++|++++|+ ++|.+.+ ++++|+++|+++|+++|+|++|... ..+.
T Consensus 156 ~~~~v~~~~~~~~~d~~~l~~~l~~--~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~ 233 (437)
T 3g0t_A 156 KFESFDLFEYRGEKLREKLESYLQT--GQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDY 233 (437)
T ss_dssp CCEEEEGGGGCTTHHHHHHHHHHTT--TCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCC
T ss_pred EEEEEeecCCCCccCHHHHHHHHhc--CCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCc
Confidence 9999998644 57899999999931 688999999994 6998861 4888999999999999999998521 1111
Q ss_pred ---------CCC-CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccC-cCCCCc--cccCCCC---CCCCCCCCCC
Q 001989 777 ---------TSP-GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP-FLPSHP--VVSTGGI---PAPEKSQPLG 840 (985)
Q Consensus 777 ---------~~p-g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~-~lp~~~--~g~~~~~---~~~~~~~~~~ 840 (985)
... ...+.++++.|+||+|+. .|.++|++++++++.+ .++... ++..... ........+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (437)
T 3g0t_A 234 SHPGEPLYQPSVANYTDNYILALSSSKAFSY----AGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSS 309 (437)
T ss_dssp CSTTSSCCCCCGGGTCSCEEEEEESTTTTSC----GGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHS
T ss_pred CcccccchhhccCCCCCcEEEEEcCccCCCC----ccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcC
Confidence 111 124567899999999854 3567999999877665 411000 0000000 0000000001
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHH---HHHHHHHHHHHHHHHHHHhhc-cCCeee-----cCCCCceeeEEEEEecC
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKG---LTEASKIAILNANYMAKRLEK-HYPILF-----RGVNGTVAHEFIVDLRG 911 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eG---l~~~~~~~~~~a~~l~~~L~~-g~~l~~-----~~~~~~~~~~~iv~~~~ 911 (985)
+. +.....++.+++... .+. +.+..++..++++++.+.|++ ++.+.. .++.+..+ +.+.++
T Consensus 310 ~~------~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~--~~~~~~- 379 (437)
T 3g0t_A 310 GA------THSAQWGMAAMLKAC-NDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEPLADGFY--FTVGYK- 379 (437)
T ss_dssp SS------CHHHHHHHHHHHHHH-HTTSCCHHHHHHHHHHHHHHHHHHHHTTTEEESSCEETTEECCSSSE--EEEEET-
T ss_pred CC------CHHHHHHHHHHHhCc-HhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEeccccCCCCCceeEE--EEEecC-
Confidence 11 112222233344332 112 667777888899999999987 333320 01112222 345554
Q ss_pred ccccCCCCHHHHHHHHHHCCCccCCCC-C--CCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 912 LKNTAGIEPEDVAKRLMDYGFHGPTMS-W--PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 912 ~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~--p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
+.+..++.++|.++||.+.... + +.++++||+++. .+++||++ +++.|+++++
T Consensus 380 -----~~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~iRis~~~-~~~e~i~~--~~~~l~~~~~ 435 (437)
T 3g0t_A 380 -----GMDSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICTSL-LPESQFPD--LEKRLQMLNA 435 (437)
T ss_dssp -----TCCHHHHHHHHHHTTEECEESTTTTCCCTTCEEEECSS-SCGGGHHH--HHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHcCeEEeeccccCCCCCCEEEEEEec-CCHHHHHH--HHHHHHHHHh
Confidence 4678999999999999875322 1 112789999984 49999999 7777877664
No 140
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.80 E-value=5.3e-18 Score=192.89 Aligned_cols=284 Identities=15% Similarity=0.105 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHHhCC--Cccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 632 EMFNNLGEWLCTITGF--DSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~--~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
++.+.+.+++.+.+|. +...+.. ++|++++..++.++. .++++|++++..|..+...++..|++++.+|
T Consensus 73 ~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~--------~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~ 144 (369)
T 3cq5_A 73 ELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFG--------GPGRTALGFQPSYSMHPILAKGTHTEFIAVS 144 (369)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC--------STTCEEEEEESSCTHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhc--------CCCCEEEEcCCChHHHHHHHHHcCCEEEEec
Confidence 4444555555555554 4444444 444555544433321 3678999988888777777888999999999
Q ss_pred CCCCCCCCHHHHHHHHHhcCC-CEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccC---CCCCCccC
Q 001989 709 TDAKGNINIEELRKAAEANRD-NLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG---LTSPGYIG 783 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~-~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~---l~~pg~~g 783 (985)
.++++.+|+++|+++++ + ++++|++++|+ ++|.+. |++++.++|+.+++++++|+++...... +.....++
T Consensus 145 ~~~~~~~d~~~l~~~i~---~~~~~~v~~~~~~nptG~~~-~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 220 (369)
T 3cq5_A 145 RGADFRIDMDVALEEIR---AKQPDIVFVTTPNNPTGDVT-SLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYP 220 (369)
T ss_dssp CCTTSSCCHHHHHHHHH---HHCCSEEEEESSCTTTCCCC-CHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCT
T ss_pred CCcCCCCCHHHHHHHhh---ccCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCC
Confidence 88777899999999998 4 77889999985 699998 8999999999999999999998532211 10112334
Q ss_pred -CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 784 -ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 784 -~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
.++++.|+||+|+.| |.++|++++++++.+.+.... .+.+ . +.....++.+++..
T Consensus 221 ~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~~~~--------------~~~~--~----~~~~~~a~~~~l~~ 276 (369)
T 3cq5_A 221 TKLVVSRTMSKAFDFA----GGRLGYFVANPAFIDAVMLVR--------------LPYH--L----SALSQAAAIVALRH 276 (369)
T ss_dssp TTEEEEEESSSTTSCG----GGCCEEEEECTHHHHHHHTTS--------------CTTC--S----CHHHHHHHHHHHHT
T ss_pred CCEEEEEechHhcCCc----ccceEEEEeCHHHHHHHHHcC--------------CCCC--C----CHHHHHHHHHHhcC
Confidence 568899999998543 566899999887655432110 0001 1 12222333344442
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCC
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPV 941 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~ 941 (985)
.+.+.+..++..++++++.+.|++ ++.+. ++.+. + +.+.++ .+..++.++|.++||.+.... .
T Consensus 277 --~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~-~--~~~~~~-------~~~~~l~~~l~~~gi~v~~~~--~ 340 (369)
T 3cq5_A 277 --SADTLGTVEKLSVERVRVAARLEELGYAVV--PSESN-F--VFFGDF-------SDQHAAWQAFLDRGVLIRDVG--I 340 (369)
T ss_dssp --HHHHHTHHHHHHHHHHHHHHHHHHHTCEEE--CCSSS-E--EEEECC-------SSHHHHHHHHHHTTEECBCCS--C
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhCCCEEC--CCCCe-E--EEEECC-------CCHHHHHHHHHHCCEEEEECC--C
Confidence 244666677788889999999986 55442 22222 2 334442 357889999999999875432 2
Q ss_pred CCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 942 PGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 942 ~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
++++||+++ +++|+++ +++.|+++++
T Consensus 341 ~~~iRis~~---~~~~i~~--~~~~l~~~~~ 366 (369)
T 3cq5_A 341 AGHLRTTIG---VPEENDA--FLDAAAEIIK 366 (369)
T ss_dssp TTEEEEECC---CHHHHHH--HHHHHHHHHT
T ss_pred CCeEEEEeC---CHHHHHH--HHHHHHHHHh
Confidence 479999996 8999999 7777777653
No 141
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.80 E-value=3.2e-18 Score=198.51 Aligned_cols=292 Identities=14% Similarity=0.123 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEc-CCCCcccHHHHHHCCcE--------
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIP-VSAHGTNPATAAMCGMK-------- 703 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~-~~~Hg~~~~~a~~~G~~-------- 703 (985)
...++++++++++|.+. .++.+||++|+++++.+++.+...+|..++++||++ ..+|+.........|.+
T Consensus 100 ~~~~l~~~la~~~g~~~-v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p 178 (420)
T 2pb2_A 100 PALRLGRKLIDATFAER-VLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGP 178 (420)
T ss_dssp HHHHHHHHHHHHSSCSE-EEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSS
T ss_pred HHHHHHHHHHhhCCCCe-EEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCC
Confidence 45688899999998654 466788999998888887765444443233577775 46788776665554432
Q ss_pred ----EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccc---ccCHHHHHHHHHHcCCEEEEEccccccccC
Q 001989 704 ----IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVY---EEGIDEICKIIHDNGGQVYMDGANMNAQVG 775 (985)
Q Consensus 704 ----vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i---~~di~eI~~la~~~galliVD~a~~~~~~~ 775 (985)
++.+|.+ |+++|+++++ +++++|+++.++ +.|++ ..++++|.++|+++|+++|+|++|. +++-
T Consensus 179 ~~~~~~~~~~~-----d~~~le~~i~---~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~-g~~~ 249 (420)
T 2pb2_A 179 KPADIIHVPFN-----DLHAVKAVMD---DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQC-GMGR 249 (420)
T ss_dssp CCSCEEEECTT-----CHHHHHHHCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTT
T ss_pred CCCCeEEecCC-----CHHHHHHHhc---cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCc-Cccc
Confidence 6667653 8999999997 789999987664 45652 1279999999999999999999983 3321
Q ss_pred CCCCC-----ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhh
Q 001989 776 LTSPG-----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 776 l~~pg-----~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~ 850 (985)
...+. ...+|++++ +|+|+ +|.++|++++++++.+.+.....+ .++.+++
T Consensus 250 ~g~~~~~~~~~~~~diit~--sK~l~-----~G~~iG~~~~~~~l~~~l~~~~~~------------------~t~~~~~ 304 (420)
T 2pb2_A 250 TGDLFAYMHYGVTPDILTS--AKALG-----GGFPVSAMLTTQEIASAFHVGSHG------------------STYGGNP 304 (420)
T ss_dssp TSSSSHHHHHTCCCSEEEE--CGGGG-----TTSCCEEEEECHHHHTTCC----C------------------CEECCCH
T ss_pred CCcHHHHHhcCCCCCeEEe--ccccc-----CCCceEEEEEhHHHHHhhcCCCcC------------------cccCcCH
Confidence 11111 124798865 69884 356789999988776555321000 0112234
Q ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCccccCCCCHHHHHH
Q 001989 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAK 925 (985)
Q Consensus 851 ~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~ 925 (985)
..++++.+.|..+..+ +..++..++++++.++|++. ++.. ..+ .+.+ +.+.++. ..+.+..++.+
T Consensus 305 ~~~aa~~a~L~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~---~~v~~~~---~~~~~~~~l~~ 374 (420)
T 2pb2_A 305 LACAVAGAAFDIINTP---EVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRG-MGLL---IGAELKP---KYKGRARDFLY 374 (420)
T ss_dssp HHHHHHHHHHHHHSSH---HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE-ETTE---EEEEECG---GGTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-cceE---EEEEECC---CchHHHHHHHH
Confidence 4455566667766543 34456677888888888652 2321 111 1222 3345431 00125788999
Q ss_pred HHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 926 RLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 926 ~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.|.++||.+.... ++.+|++|+...|++|||+ +++.|+++++++
T Consensus 375 ~l~~~Gi~v~~~~---~~~iRl~~~~~~t~eei~~--~~~~l~~~l~~~ 418 (420)
T 2pb2_A 375 AGAEAGVMVLNAG---ADVMRFAPSLVVEEADIHE--GMQRFAQAVGKV 418 (420)
T ss_dssp HHHHTTEECEESS---TTEEEECCCTTCCHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHCCCEEEeCC---CCEEEEECCCCCCHHHHHH--HHHHHHHHHHHH
Confidence 9999999875432 4799999999999999999 888898888765
No 142
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.80 E-value=3.7e-19 Score=206.06 Aligned_cols=315 Identities=15% Similarity=0.126 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA 711 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~ 711 (985)
++.+++++.+++++|.+. .++.++|++|+..++.+++ ..++++||++...|..+...++..|++++.+++++
T Consensus 42 ~l~~~l~~~la~~~g~~~-~i~~~~gt~al~~~~~~~~-------~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~ 113 (418)
T 2c81_A 42 SMERKFAKAFADFNGVPY-CVPTTSGSTALMLALEALG-------IGEGDEVIVPSLTWIATATAVLNVNALPVFVDVEA 113 (418)
T ss_dssp CHHHHHHHHHHHHHTCSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCT
T ss_pred HHHHHHHHHHHHHhCCCc-EEEeCCHHHHHHHHHHHcC-------CCCcCEEEECCCccHhHHHHHHHcCCEEEEEecCC
Confidence 345688899999999884 4566778776654444331 14678999999888888777888999999999986
Q ss_pred -CCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEcccccccc-CCCCCCccCCcEEEe
Q 001989 712 -KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV-GLTSPGYIGADVCHL 789 (985)
Q Consensus 712 -~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~-~l~~pg~~g~Di~~~ 789 (985)
++.+|+++|+++++ +++++|++++ .+|... |+++|.++|+++|+++|+|++|..+.. .....+.+ .|+.+.
T Consensus 114 ~~~~~d~~~l~~~i~---~~~~~v~~~~--~~G~~~-~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~-~~~~~~ 186 (418)
T 2c81_A 114 DTYCIDPQLIKSAIT---DKTKAIIPVH--LFGSMA-NMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTI-GDIGAF 186 (418)
T ss_dssp TTCSBCHHHHGGGCC---TTEEEECCBC--CTTCCC-CHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SSEEEE
T ss_pred CCCCcCHHHHHHhhC---CCCeEEEEeC--CcCCcc-cHHHHHHHHHHCCCEEEEECcccccCccCCEecccc-cceEEE
Confidence 68899999999997 7899998876 468887 899999999999999999999864321 10112222 356655
Q ss_pred CC--cccccccCCCCCCceEEEEEc-ccccCcCCCC-ccccCCCC----CCCCCC--CCCCCCCC-cchhhhHHHHHHHH
Q 001989 790 NL--HKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSH-PVVSTGGI----PAPEKS--QPLGTIAA-APWGSALILPISYT 858 (985)
Q Consensus 790 s~--hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~-~~g~~~~~----~~~~~~--~~~~~i~s-~~~g~~~~~~~a~a 858 (985)
++ ||+|+ +| .+|+++++ +++.+.+... ..+..... .+.... .++..+.+ +..... +.++
T Consensus 187 s~s~~K~~~-----~g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~aa-- 256 (418)
T 2c81_A 187 SCQQGKVLT-----AG-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSE--FQSA-- 256 (418)
T ss_dssp ECCTTSSSC-----SS-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCH--HHHH--
T ss_pred eccCCcccC-----CC-CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCH--HHHH--
Confidence 55 99984 23 67888885 4543322100 00100000 000000 00001110 000011 1111
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeec-CCCC---ceeeEEEEEecCccccCCCCHHHHHHHHHHC-CCc
Q 001989 859 YIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFR-GVNG---TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY-GFH 933 (985)
Q Consensus 859 ~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~-~~~~---~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~-Gi~ 933 (985)
+.....+++++..++..++++++.+.|++..++... .+.+ ..++.+.+.++.. ...+.+..++.+.|.++ ||.
T Consensus 257 -~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~L~~~~gI~ 334 (418)
T 2c81_A 257 -ILLDQLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPV-KFGGLNADQFCEILREKLNMG 334 (418)
T ss_dssp -HHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGG-GTTTCCHHHHHHHHHHHHTCC
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEEccc-cccccCHHHHHHHHHHcCCCC
Confidence 111122446666677778889999999763233222 1212 1122344555410 00145788999999999 998
Q ss_pred ---cCCCCCC------------------------------C-------CCEEEEeccCCC-CHHHHHHHHccCChhHHHH
Q 001989 934 ---GPTMSWP------------------------------V-------PGTLMIEPTESE-SKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 934 ---~~~~~~p------------------------------~-------~~~lris~t~~~-t~eeId~~~~~~~l~~~~~ 972 (985)
+.....| . .+.+|++++..+ |+||||+ ++++|+++++
T Consensus 335 ~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~--~~~~l~~~~~ 412 (418)
T 2c81_A 335 TFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSL--LVDAVAELAR 412 (418)
T ss_dssp TTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHH--HHHHHHHHHH
T ss_pred cccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHH--HHHHHHHHHH
Confidence 6432111 0 148999999999 9999999 8899998887
Q ss_pred hhc
Q 001989 973 RLK 975 (985)
Q Consensus 973 ~~~ 975 (985)
+++
T Consensus 413 ~~~ 415 (418)
T 2c81_A 413 KFC 415 (418)
T ss_dssp TTC
T ss_pred hhc
Confidence 654
No 143
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.80 E-value=3.5e-18 Score=191.24 Aligned_cols=276 Identities=11% Similarity=0.088 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~-a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
..++++.+++++|.+...+..++|++ +.. .+++. . ++++|+++++.|..+...++..|++++.+|.+++
T Consensus 53 ~~~lr~~la~~~~~~~~~i~~t~G~~~~l~---~~~~~------~-~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~ 122 (337)
T 3p1t_A 53 EPRVMRKLAEHFSCPEDNLMLVRGIDECFD---RISAE------F-SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTDD 122 (337)
T ss_dssp HHHHHHHHHHHHTSCGGGEEEESHHHHHHH---HHHHH------S-TTSEEEEESSSCSHHHHHHTTSCCEEEEECBCTT
T ss_pred hHHHHHHHHHHhCcCHHHEEEeCCHHHHHH---HHHHh------c-CCCeEEEeCCCcHHHHHHHHHcCCEEEEecCCCC
Confidence 45788899999999875555555544 442 33332 1 5689999988887777778889999999999888
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC--CCCCccCCcEEEe
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL--TSPGYIGADVCHL 789 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l--~~pg~~g~Di~~~ 789 (985)
+.+|+++|+++ .++++|++++| |++|.+. |+++|.++|+++++ +++|+++.. ++.. ..+...+.++++.
T Consensus 123 ~~~d~~~l~~~-----~~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~-~ivDea~~~-~~~~~~~~~~~~~~~i~~~ 194 (337)
T 3p1t_A 123 LLLDPNDLAQV-----SRDDCVVLANPSNPTGQAL-SAGELDQLRQRAGK-LLIDETYVD-YSSFRARGLAYGENELVFR 194 (337)
T ss_dssp SSBCHHHHTTC-----CTTEEEEEESSCTTTCCCC-CHHHHHHHHHHCSE-EEEECTTGG-GSSCSSSCCCCBTTEEEEE
T ss_pred CCCCHHHHHhh-----cCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCc-EEEECCChh-hccccccccccCCCEEEEe
Confidence 89999998864 45789999999 5799998 89999999999997 667998742 2211 1223345679999
Q ss_pred CCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHH
Q 001989 790 NLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 790 s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~ 869 (985)
|++|+|+. .|.++|++++++++.+.+.... ...+.+ .....++.+++.. .+.+.
T Consensus 195 S~sK~~g~----~G~r~G~~~~~~~~~~~l~~~~--------------~~~~~~------~~~~~a~~~~l~~--~~~~~ 248 (337)
T 3p1t_A 195 SFSKSYGL----AGLRLGALFGPSELIAAMKRKQ--------------WFCNVG------TLDLHALEAALDN--DRARE 248 (337)
T ss_dssp ESSSTTCC----TTTCCEEEECCHHHHHHHHTTS--------------CTTCSC------HHHHHHHHHHHTC--HHHHH
T ss_pred eCchhccC----cchheEEEEeCHHHHHHHHhhc--------------CCCCCC------HHHHHHHHHHhCC--HHHHH
Confidence 99999854 3678899998877655442110 011111 1112222233331 23455
Q ss_pred HHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-CCCCCCEEEE
Q 001989 870 EASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-SWPVPGTLMI 947 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~p~~~~lri 947 (985)
+..++..++++++.+.|++ ++.+. .+.+.+ +.+... +..++.+.|.++||.+... .+..++++||
T Consensus 249 ~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~---~~~~~~--------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi 315 (337)
T 3p1t_A 249 AHIAKTLAQRRRVADALRGLGYRVA--SSEANF---VLVENA--------AGERTLRFLRERGIQVKDAGQFGLHHHIRI 315 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCBC--CCSSSE---EEEECT--------TTHHHHHHHHHTTEECEEGGGGTCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCcCEEC--CCCCeE---EEEEcC--------CHHHHHHHHHHCCeEEEECccCCCCCeEEE
Confidence 5666677788899999987 44432 222222 233332 3467888999999987542 2334589999
Q ss_pred eccCCCCHHHHHHHHccCChhHHH
Q 001989 948 EPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 948 s~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+++ +++|+++ ++++|+++.
T Consensus 316 s~~---~~~~~~~--l~~al~~~~ 334 (337)
T 3p1t_A 316 SIG---REEDNDR--LLAALAEYS 334 (337)
T ss_dssp ECC---CHHHHHH--HHHHHHHHT
T ss_pred ecC---CHHHHHH--HHHHHHHHh
Confidence 985 8999999 667776654
No 144
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.79 E-value=3.6e-18 Score=196.43 Aligned_cols=295 Identities=14% Similarity=0.115 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC----------
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG---------- 701 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G---------- 701 (985)
...++++++++++|.+. .++.++|++|++.++.+++.+...+|..++++||+ ...+|+.........+
T Consensus 82 ~~~~l~~~la~~~~~~~-v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 160 (406)
T 4adb_A 82 PVLRLAKKLIDATFADR-VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAP 160 (406)
T ss_dssp HHHHHHHHHHHHSSCSE-EEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCS
T ss_pred HHHHHHHHHHhhCCCCe-EEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCC
Confidence 35688899999998873 45667888888877777765544444334477777 4556776555544333
Q ss_pred --cEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccc-c--c-cCHHHHHHHHHHcCCEEEEEcccccccc
Q 001989 702 --MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGV-Y--E-EGIDEICKIIHDNGGQVYMDGANMNAQV 774 (985)
Q Consensus 702 --~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~-i--~-~di~eI~~la~~~galliVD~a~~~~~~ 774 (985)
.++..+|. .|+++|+++++ +++++|+++ | |.+|. + . .++++|.++|+++|+++|+|++|. +++
T Consensus 161 ~~~~~~~~~~-----~d~~~l~~~l~---~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~ 230 (406)
T 4adb_A 161 LPADIRHAAY-----NDINSASALID---DSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQT-GVG 230 (406)
T ss_dssp CCSSEEEECT-----TCHHHHHTTCS---TTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTT
T ss_pred CCCCceEeCC-----CcHHHHHHHhc---CCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCC
Confidence 35556665 38999999997 789999998 7 45553 2 1 269999999999999999999984 222
Q ss_pred CCCCC-----CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 775 GLTSP-----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 775 ~l~~p-----g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
-...+ .....|++++ +|+|+ +|.++|++++++++.+.+.....+ . +.+. +
T Consensus 231 ~~g~~~~~~~~~~~~d~~t~--sK~~~-----~G~r~G~~~~~~~~~~~~~~~~~~------------~--~~~~----~ 285 (406)
T 4adb_A 231 RTGELYAYMHYGVTPDLLTT--AKALG-----GGFPVGALLATEECARVMTVGTHG------------T--TYGG----N 285 (406)
T ss_dssp TTSSSSHHHHHTCCCSEEEE--CGGGG-----TTSCCEEEEECHHHHHTCCTTSSC------------C--SSTT----C
T ss_pred ccchhHHHHhcCCCCCEEEe--chhhc-----CCCCeEEEEEcHHHHhhhccCCcC------------C--CCCC----C
Confidence 11111 1234688865 79985 356789999998876655322100 0 1111 2
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHH
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~ 926 (985)
+..+.++.+.+..+.. .+..++..++++++.++|++. +.+....+ + ....+.+.++. ....+..++.+.
T Consensus 286 ~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~-~g~~~~~~~~~---~~~~~~~~~~~~ 357 (406)
T 4adb_A 286 PLASAVAGKVLELINT---PEMLNGVKQRHDWFVERLNTINHRYGLFSEVR-G-LGLLIGCVLNA---DYAGQAKQISQE 357 (406)
T ss_dssp HHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE-E-ETTEEEEEECT---TTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEE-E-EEEEEEEEEeC---CcHHHHHHHHHH
Confidence 3334444555665543 344556778888888888752 12111000 0 01113344431 001257899999
Q ss_pred HHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 927 LMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 927 L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
|.++|+.+.... .+++|++++..+|++||++ +++.|++++++++.
T Consensus 358 l~~~gi~v~~~~---~~~iRi~~~~~~~~e~i~~--~~~~l~~~l~~~~~ 402 (406)
T 4adb_A 358 AAKAGVMVLIAG---GNVVRFAPALNVSEEEVTT--GLDRFAAACEHFVS 402 (406)
T ss_dssp HHHTTEECEESS---TTEEEECCCTTCCHHHHHH--HHHHHHHHHHHHHC
T ss_pred HHHCCcEEeecC---CCeEEEECCCCCCHHHHHH--HHHHHHHHHHHHHh
Confidence 999999875433 4799999999999999999 88999999988764
No 145
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.79 E-value=2.6e-18 Score=197.76 Aligned_cols=301 Identities=13% Similarity=0.062 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-C
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA-K 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~-~ 712 (985)
..++++.+++++|.+. .++.++|++|+..++.+++ ..++++|+++...|..+...++..|++++.+|+++ +
T Consensus 65 ~~~l~~~la~~~~~~~-~v~~~~Gt~a~~~~l~~~~-------~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 136 (399)
T 2oga_A 65 LEGFEAEFAAYCETDH-AVGVNSGMDALQLALRGLG-------IGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDH 136 (399)
T ss_dssp HHHHHHHHHHHTTSSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCSSS
T ss_pred HHHHHHHHHHHHCCCe-EEEecCHHHHHHHHHHHhC-------CCCcCEEEECCCccHHHHHHHHHCCCEEEEEecCCCC
Confidence 4578899999999874 4566778877655544331 14678999998888777777888999999999976 4
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC--CcEEEeC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG--ADVCHLN 790 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g--~Di~~~s 790 (985)
+.+|+++|+++++ +++++|++++ .+|.+. |+++|.++|+++|+++|+|++|..+.. . ....++ .|++++|
T Consensus 137 ~~~d~~~l~~~i~---~~~~~v~~~n--~tG~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~-~-~~~~~~~~~di~~~S 208 (399)
T 2oga_A 137 PTLDPLLVEKAIT---PRTRALLPVH--LYGHPA-DMDALRELADRHGLHIVEDAAQAHGAR-Y-RGRRIGAGSSVAAFS 208 (399)
T ss_dssp SSBCHHHHHHHCC---TTEEEECCBC--GGGCCC-CHHHHHHHHHHHTCEECEECTTCTTCE-E-TTEETTCTTCEEEEE
T ss_pred CCcCHHHHHHhcC---CCCeEEEEeC--CcCCcc-CHHHHHHHHHHcCCEEEEECcccccCc-c-CCeecccccCEEEEe
Confidence 7899999999997 6888888654 579988 899999999999999999999854321 1 111233 6999999
Q ss_pred Cc--ccccccCCCCCCceEEEEEc-ccccCcCCCC-ccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 791 LH--KTFCIPHGGGGPGMGPIGVK-KHLAPFLPSH-PVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 791 ~h--K~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~-~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
+| |+|+.| | .+|+++++ +++.+.+... ..|.... ... ...+. +... +...++++.+.+.
T Consensus 209 ~~~sK~~~~~----G-~~g~~~~~~~~~~~~l~~~~~~g~~~~-~~~-~~~g~-~~~~----~~~~~a~~~~~l~----- 271 (399)
T 2oga_A 209 FYPGKNLGCF----G-DGGAVVTGDPELAERLRMLRNYGSRQK-YSH-ETKGT-NSRL----DEMQAAVLRIRLA----- 271 (399)
T ss_dssp CCTTSSSCCS----S-CCEEEEESCHHHHHHHHHHHBTTCSST-TCC-CSCCC-BCCC----CHHHHHHHHHHHH-----
T ss_pred CCCCccCCcC----C-ceEEEEeCCHHHHHHHHHHHhcCcccc-ccc-ccccc-CCCc----CHHHHHHHHHHHH-----
Confidence 95 988422 3 46777775 5554322110 0011000 000 00000 0000 1222222223332
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc--cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-CCC--
Q 001989 867 GLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-WPV-- 941 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~--g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~p~-- 941 (985)
.+.+..++..++++++.+.|++ ++.+...+. .....-+.+.+. ..+..++.+.|.++||.+.... .|.
T Consensus 272 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~-~~~~~~~~~~~~------~~~~~~l~~~L~~~gI~v~~~~~~~~~~ 344 (399)
T 2oga_A 272 HLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAP-DTDPVWHLFTVR------TERRDELRSHLDARGIDTLTHYPVPVHL 344 (399)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCT-TEECCCSSEEEE------CSSHHHHHHHHHHTTBCCBCSCSSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCccccCCCC-CCcceeEEEEEE------CCCHHHHHHHHHHCCCceecCCCCcccc
Confidence 2344455667778899999976 333321111 111100012222 2367889999999999875421 110
Q ss_pred ---------------------CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 942 ---------------------PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 942 ---------------------~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.+.+||+++..+|++||++ ++++|++++++++.
T Consensus 345 ~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~--~~~~l~~~~~~l~~ 398 (399)
T 2oga_A 345 SPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALR--VIDAVREWAERVDQ 398 (399)
T ss_dssp SHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHH--HHHHHHHHHHSCC-
T ss_pred chhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHH--HHHHHHHHHHHhcc
Confidence 1579999999999999999 88999988876643
No 146
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.79 E-value=3.9e-18 Score=199.47 Aligned_cols=297 Identities=19% Similarity=0.174 Sum_probs=192.5
Q ss_pred HHHHHH-HHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH-----HHHCCcEEEE
Q 001989 633 MFNNLG-EWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT-----AAMCGMKIVS 706 (985)
Q Consensus 633 ~~~e~~-~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~-----a~~~G~~vv~ 706 (985)
.++++. +++++++|.+.+.++++||++|+++++.++. .++|+|++++..|+.+... ....++.++.
T Consensus 91 ~~e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~~~~--------~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~ 162 (447)
T 3h7f_A 91 VVENLARDRAKALFGAEFANVQPHSGAQANAAVLHALM--------SPGERLLGLDLANGGHLTHGMRLNFSGKLYENGF 162 (447)
T ss_dssp HHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------CTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEE
T ss_pred HHHHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHHhc--------CCCCEEEecCcccccccchhhhhhhcCCeeEEEE
Confidence 344555 8999999998876768889988766655442 4789999988877663211 2224567777
Q ss_pred EcCC-CCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEcccccccc--C-CCCCCcc
Q 001989 707 VGTD-AKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV--G-LTSPGYI 782 (985)
Q Consensus 707 v~~d-~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~--~-l~~pg~~ 782 (985)
++++ +++.+|+++|++++++ .++++|++++|++ +... |+++|+++|+++|+++++|++|..++. + ...+. .
T Consensus 163 ~~~~~~~~~~d~~~l~~~i~~--~~~~~i~~~~~~~-~~~~-~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~-~ 237 (447)
T 3h7f_A 163 YGVDPATHLIDMDAVRATALE--FRPKVIIAGWSAY-PRVL-DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV-P 237 (447)
T ss_dssp ECCCTTTCSCCHHHHHHHHHH--HCCSEEEEECSSC-CSCC-CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-T
T ss_pred cCcCcccCCcCHHHHHHHHHh--cCCeEEEEcCCCC-CCcc-CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC-C
Confidence 8876 4578999999999963 3566788877754 2222 799999999999999999999854331 1 11222 3
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
++|+++.++||+| +||.+|++++++++.+.+...... . ...+. . ... ++++.+.+..
T Consensus 238 ~~di~~~s~sK~l------~G~~gG~i~~~~~~~~~l~~~~~~------------~--~~~~~-~-~~~-~~a~~~a~~~ 294 (447)
T 3h7f_A 238 HADVVSTTVHKTL------GGGRSGLIVGKQQYAKAINSAVFP------------G--QQGGP-L-MHV-IAGKAVALKI 294 (447)
T ss_dssp TCSEEEEESSGGG------CCCSCEEEEECGGGHHHHHHHHTT------------T--TCSSC-C-HHH-HHHHHHHHHH
T ss_pred CCcEEEecCCcCC------CCCCeEEEEECHHHHHHHhhhcCC------------c--ccCCc-c-HHH-HHHHHHHHHH
Confidence 5799999999998 468779999887665443211000 0 00110 0 111 1122233344
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhcc------CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccC-
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEKH------YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP- 935 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~g------~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~- 935 (985)
+..+++.+..++..++++++.+.|++. +.+...+. . .+.+.++++. .+.+...+.+.|.++||.+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~-~--~~~~~~~~~~----~~~~~~~~~~~l~~~GI~v~~ 367 (447)
T 3h7f_A 295 AATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGT-D--VHLVLVDLRD----SPLDGQAAEDLLHEVGITVNR 367 (447)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSC-S--SSEEEEECTT----SSCCHHHHHHHHHHTTEECBC
T ss_pred hhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCC-C--CCEEEEEcCC----CCCCHHHHHHHHHHCCeEEec
Confidence 444467778888899999999999753 44432111 1 2234566642 24567788888888899876
Q ss_pred ---CC--CCC-CCCEEEEeccCC----CCHHHHHHHHccCChhHHHHhh
Q 001989 936 ---TM--SWP-VPGTLMIEPTES----ESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 936 ---~~--~~p-~~~~lris~t~~----~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.. ..| .++.+||+++.. .+++||++ ++++|++++...
T Consensus 368 ~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~--~~~~l~~~l~~~ 414 (447)
T 3h7f_A 368 NAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTE--VADIIATALATG 414 (447)
T ss_dssp -------------CEEEEECHHHHHHTCCHHHHHH--HHHHHHHHHHSG
T ss_pred ccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHH--HHHHHHHHHhcc
Confidence 22 122 357899998754 67999999 777777776543
No 147
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.79 E-value=1e-18 Score=198.28 Aligned_cols=280 Identities=17% Similarity=0.180 Sum_probs=199.7
Q ss_pred hHHHHHHHHHHH-HHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 208 GRLESLLNFQTM-IADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 208 g~l~~i~e~q~~-ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
+..+.+.++++. +|+++|.+ ++.+++|+|.+++.++.++ . ++||+|++++..|+++...++ ..|++++.+
T Consensus 50 ~~~~~~~~l~~~~la~~~~~~--~v~~~~g~t~a~~~~~~~~-~--~~gd~vl~~~~~~~~~~~~~~----~~g~~~~~v 120 (371)
T 2e7j_A 50 IKTPPIHDFIHNQLPKFLGCD--VARVTNGAREAKFAVMHSL-A--KKDAWVVMDENCHYSSYVAAE----RAGLNIALV 120 (371)
T ss_dssp ---CCHHHHHHTHHHHHTTSS--EEEEESSHHHHHHHHHHHH-C--CTTCEEEEETTCCHHHHHHHH----HTTCEEEEE
T ss_pred hHHHHHHHHHHHHHHHHcCCC--EEEEeCChHHHHHHHHHHH-h--CCCCEEEEccCcchHHHHHHH----HcCCeEEEe
Confidence 344556778899 99999988 7888899998888777665 2 388999999999999998864 358888888
Q ss_pred C--ch--------hhhc-cC-----CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCccc
Q 001989 287 D--LK--------DIDY-KS-----GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELG 348 (985)
Q Consensus 287 ~--~~--------~l~~-l~-----~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~G 348 (985)
+ .+ +|++ ++ +++++|++.+| |++|.+.|+++|.++|+++|+++++|. ..+.+... +..++|
T Consensus 121 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~-a~~~~~~~~~~~~~~ 199 (371)
T 2e7j_A 121 PKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNG-AYAIGRMPVSLKEIG 199 (371)
T ss_dssp CCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEEC-TTTBTTBCCCHHHHT
T ss_pred ecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEEC-ccccCCCCCChhhcC
Confidence 7 43 4555 55 68999999998 789999999999999999999999953 55555442 335678
Q ss_pred ceEEEecC-ccccccCCCCCCcEEEEEEchhhHhc-CCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHH
Q 001989 349 ADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRM-MPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQAL 426 (985)
Q Consensus 349 aDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~-lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l 426 (985)
+|++++|. |+|++| +++|++++++++++. +.....|. .. ....+.+|+|. ...
T Consensus 200 ~di~~~s~sK~~~~~-----~~~G~~~~~~~~~~~~~~~~~~~~------~~-----------~~~~~~~~~~~---~~~ 254 (371)
T 2e7j_A 200 ADFIVGSGHKSMAAS-----GPIGVMGMKEEWAEIVLRRSEKYK------NK-----------EVELLGCTARG---ATI 254 (371)
T ss_dssp CSEEEEEHHHHSSCC-----SSCEEEEECTTTTTTTTCBCSSCT------TS-----------BGGGTTCCCCS---HHH
T ss_pred CCEEEecCCcCCCCC-----CCcEEEEEechhhhhhccccccCc------cc-----------ccccccCCcCH---HHH
Confidence 99999998 778643 357999999887776 63211110 00 00112345554 233
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHH--HHHHHHHHHHHhcCCCeEEcCCC--CcceEEEecCCHHHHHHHHHHcCceeeee
Q 001989 427 LANMAAMYAVYHGPEGLKTIAQRV--HGLAGTFALGLKKLGTVEVQGLP--FFDTVKVKCADAHAIASAAYKIEMNLRVV 502 (985)
Q Consensus 427 ~a~~aa~~l~~~g~~Gl~~i~~~~--~~~a~~l~~~L~~~g~~~~~~~~--~~~~~~~~~~~~~~v~~~L~~~GI~~~~~ 502 (985)
.++.+++ .++.. ++.++. .++++++.+.|+++| +++..+. ...-+.+..++..++.+.|.++||.+...
T Consensus 255 ~a~~~~l--~~~~~----~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 327 (371)
T 2e7j_A 255 ITLMASF--PHVRE----RIKRWDEEVEKARRFAAEMEKLG-IKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRE 327 (371)
T ss_dssp HHHHHHH--HHHHH----HGGGHHHHHHHHHHHHHHHHHTT-CEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHH
T ss_pred HHHHHHH--HHHHH----HHHHHHHHHHHHHHHHHHHHHcC-cEEecCCCccCceEEEECCCHHHHHHHHHHCCEEEEec
Confidence 3433443 22211 566777 888999999999886 8877432 23345555434677888888889976431
Q ss_pred ---------cCCeEE-EEeccC-CCHHHHHHHHHHHhC
Q 001989 503 ---------DSNTVT-ASFDET-TTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ---------~~~~lr-is~t~~-~t~edId~li~aL~~ 529 (985)
.++.+| ++++.+ +|++|+++++++|.+
T Consensus 328 ~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~ 365 (371)
T 2e7j_A 328 LKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKE 365 (371)
T ss_dssp HHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHH
T ss_pred cccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHH
Confidence 157899 999998 999999999999874
No 148
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.79 E-value=7.1e-18 Score=196.45 Aligned_cols=294 Identities=14% Similarity=0.159 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHH-hcCCCCC-CEEEEcC-CCCcccHHHHHHCC--------
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHK-ARGDHHR-NVCIIPV-SAHGTNPATAAMCG-------- 701 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~-~~g~~~~-~~IIv~~-~~Hg~~~~~a~~~G-------- 701 (985)
...++++.+++++|.+. .++.+||++|+++++.+++.|.. .+|..++ ++||+++ .+|+.........|
T Consensus 108 ~~~~l~~~la~~~g~~~-v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~ 186 (433)
T 1z7d_A 108 PLGICERYLTNLLGYDK-VLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNF 186 (433)
T ss_dssp HHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------
T ss_pred HHHHHHHHHHhhcCCCe-EEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccC
Confidence 35578889999998654 46678899999888887765432 2222233 7888755 67776544433333
Q ss_pred ----cEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc---cCHHHHHHHHHHcCCEEEEEccccccc
Q 001989 702 ----MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE---EGIDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 702 ----~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~---~di~eI~~la~~~galliVD~a~~~~~ 773 (985)
.+++.+|.+ |+++|+++++ .+++++|+++.. +.+|++. .++++|.++|+++|+++|+|++|. ++
T Consensus 187 ~p~~~~v~~~~~~-----d~~~le~~l~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~ 258 (433)
T 1z7d_A 187 GPFAPQFSKVPYD-----DLEALEEELK--DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-GL 258 (433)
T ss_dssp -----CEEEECTT-----CHHHHHHHHT--STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TT
T ss_pred CCCCCCeEEeCCC-----CHHHHHHHhC--CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCcc-CC
Confidence 345666653 8999999994 267888776543 3478753 269999999999999999999984 33
Q ss_pred cCCCCC---C--ccCCcEEEeCCcccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcch
Q 001989 774 VGLTSP---G--YIGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 774 ~~l~~p---g--~~g~Di~~~s~hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~ 847 (985)
+-.... . ...+|++++ +|+|+ || ..+|++++++++.+.+.....+ .++.
T Consensus 259 g~~g~~~~~~~~~~~~di~t~--sK~l~-----~G~~~~G~v~~~~~~~~~l~~~~~~------------------~t~~ 313 (433)
T 1z7d_A 259 GRTGKLLCVHHYNVKPDVILL--GKALS-----GGHYPISAVLANDDIMLVIKPGEHG------------------STYG 313 (433)
T ss_dssp TTTSSSSGGGGGTCCCSEEEE--CGGGG-----TTSSCCEEEEECHHHHTTCCTTCCC------------------CTTT
T ss_pred CcCCcchhhHhcCCCCCEEEE--Ccccc-----CCCCCeEEEEECHHHHhhhcccccc------------------ccCC
Confidence 211111 1 124788855 58874 35 4588999998876655321000 0112
Q ss_pred hhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc---cCCee--ecCCCCceeeEEEEEecCccccCCCCHHH
Q 001989 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---HYPIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPED 922 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~---g~~l~--~~~~~~~~~~~~iv~~~~~~~~~g~~~~~ 922 (985)
+++..++++.+.+..+..++ ..++..++++++.++|++ ++++. ..+ .+.+ +.+.++. .+.+..+
T Consensus 314 ~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-~g~~---~~i~~~~----~~~~~~~ 382 (433)
T 1z7d_A 314 GNPLAASICVEALNVLINEK---LCENAEKLGGPFLENLKRELKDSKIVRDVRG-KGLL---CAIEFKN----ELVNVLD 382 (433)
T ss_dssp TCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHTTCTTEEEEEE-ETTE---EEEEECT----TTCCHHH
T ss_pred CCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe-eeeE---EEEEEcc----ChhHHHH
Confidence 24455555666676665443 345667788888888875 23321 111 1121 3445541 0135788
Q ss_pred HHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 923 VAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 923 v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+.+.|.++||.+.... .+.+|++++..+|++|||+ ++++|++++++++.
T Consensus 383 ~~~~l~~~Gv~v~~~~---~~~iRi~~~~~~t~e~i~~--~l~~l~~~l~~~~~ 431 (433)
T 1z7d_A 383 ICLKLKENGLITRDVH---DKTIRLTPPLCITKEQLDE--CTEIIVKTVKFFDE 431 (433)
T ss_dssp HHHHHHHTTEECCEET---TTEEEECCCTTCCHHHHHH--HHHHHHHHHHHHC-
T ss_pred HHHHHHHCCeEEecCC---CCEEEEECCcCCCHHHHHH--HHHHHHHHHHHHHh
Confidence 9999999999875432 4799999999999999999 88999998877643
No 149
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.79 E-value=6.5e-19 Score=200.32 Aligned_cols=297 Identities=11% Similarity=0.055 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
..++++.+++++|.+. .+++++|++|++.++.+++ ..++++|+++...|+.+...++..|++++.+++++++
T Consensus 40 ~~~l~~~la~~~~~~~-~~~~~~gt~a~~~~~~~~~-------~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (374)
T 3uwc_A 40 LEKFEKRFAALHNAPH-AIGVGTGTDALAMSFKMLN-------IGAGDEVITCANTFIASVGAIVQAGATPVLVDSENGY 111 (374)
T ss_dssp HHHHHHHHHHHTTCSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTS
T ss_pred HHHHHHHHHHHhCCCc-EEEeCCHHHHHHHHHHHcC-------CCCCCEEEECCCccHHHHHHHHHcCCEEEEEecCCCC
Confidence 4578899999999874 4566788887755544331 2467899999988877777788899999999998778
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC--CcEEEeCC
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG--ADVCHLNL 791 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g--~Di~~~s~ 791 (985)
.+|+++|+++++ +++++|+++ |++|.+. |+++|.++|+++|+++|+|++|..+.. + ....++ .|++++|+
T Consensus 112 ~~d~~~l~~~~~---~~~~~v~~~--n~~G~~~-~~~~i~~~~~~~~~~li~D~~~~~g~~-~-~~~~~~~~~d~~~~s~ 183 (374)
T 3uwc_A 112 VIDPEKIEAAIT---DKTKAIMPV--HYTGNIA-DMPALAKIAKKHNLHIVEDACQTILGR-I-NDKFVGSWGQFACFSL 183 (374)
T ss_dssp SBCGGGTGGGCC---TTEEEECCB--CGGGCCC-CHHHHHHHHHHTTCEEEEECTTCTTCE-E-TTEETTSSSSEEEEEC
T ss_pred CcCHHHHHHhCC---CCceEEEEe--CCcCCcC-CHHHHHHHHHHcCCEEEEeCCCccCce-e-CCeeccccccEEEEeC
Confidence 999999999987 788888833 4689988 899999999999999999999853321 1 111222 69999998
Q ss_pred c--ccccccCCCCCC-ceEEEEEcc-cccCcCCC-CccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 792 H--KTFCIPHGGGGP-GMGPIGVKK-HLAPFLPS-HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 792 h--K~l~~p~g~GGP-g~G~i~~~~-~l~~~lp~-~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
| |+|+ |+ .+|++++++ .+.+.+.. ...+... .+.......+.. .....+ + +.....+
T Consensus 184 ~~~K~l~------~~g~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~~~a--a---~~~~~~~ 245 (374)
T 3uwc_A 184 HPLKNLN------VWSDAGVIITHSDEYAEKLRLYRNHGLIN---RDVCVEYGINCR----MDTIQA--V---IANRLMN 245 (374)
T ss_dssp SSSSSSC------CSSCCEEEEESCHHHHHHHHHHTBTTEEE---TTEESSCCCBCB----CCHHHH--H---HHHHHGG
T ss_pred CCCCcCC------ccceeEEEEeCCHHHHHHHHHHHhcCccc---cCccccccccCC----CCHHHH--H---HHHHHHH
Confidence 8 9884 32 367777664 33222110 0001000 000000001111 011111 1 1222234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCC-eeecCC-CC--ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-CC-
Q 001989 867 GLTEASKIAILNANYMAKRLEKHYP-ILFRGV-NG--TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-WP- 940 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~g~~-l~~~~~-~~--~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~p- 940 (985)
++.+..++..++++++.+.|++... +..... .. +.+..+.+.. .+..++.+.|.++||.+.... .|
T Consensus 246 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~gi~v~~~~~~~~ 317 (374)
T 3uwc_A 246 QLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRV--------KYRDQLFQYLKDNGIEVKIHYPIAM 317 (374)
T ss_dssp GHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEE--------TTHHHHHHHHHHTTBCCBCSCSSCG
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEc--------CCHHHHHHHHHHCCCccccCCCCcc
Confidence 5666777788889999999987322 322211 11 1112233332 257899999999999875422 11
Q ss_pred ---------------C-------CCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 941 ---------------V-------PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 941 ---------------~-------~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
. .+.+|++++..+|++|||+ ++++|++++++.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~--~~~~l~~~l~~~ 371 (374)
T 3uwc_A 318 HLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINY--IIKKVREFYLEK 371 (374)
T ss_dssp GGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHH--HHHHHHHHHHTT
T ss_pred ccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHH--HHHHHHHHHHhh
Confidence 0 1689999999999999999 888999888653
No 150
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.79 E-value=7.4e-18 Score=195.85 Aligned_cols=277 Identities=16% Similarity=0.169 Sum_probs=195.8
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001989 206 AQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 206 sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~ 285 (985)
..|..+...++++.+|+++|.+ ...++.+|+.++++++.++ .++||+|+++...|+++...++. .|.+++.
T Consensus 104 ~~G~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~~al~~l---~~~gd~vl~~~~~h~~~~~~~~~----~g~~~~~ 174 (427)
T 2w8t_A 104 LNGTFHDHMEVEQALRDFYGTT--GAIVFSTGYMANLGIISTL---AGKGEYVILDADSHASIYDGCQQ----GNAEIVR 174 (427)
T ss_dssp TTCCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHH---SCTTCEEEEETTCCHHHHHHHHH----SCSEEEE
T ss_pred ccCCcHHHHHHHHHHHHHhCCC--ceEEecCcHHHHHHHHHHh---cCCCCEEEECCcccHHHHHHHHH----cCCeeEE
Confidence 4455567788899999999986 3567778877666655443 24889999999999999988753 4777777
Q ss_pred eC---chhhhc-cCC----CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCC--------C-Ccc
Q 001989 286 SD---LKDIDY-KSG----DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP--------P-GEL 347 (985)
Q Consensus 286 v~---~~~l~~-l~~----~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~--------~-~~~ 347 (985)
++ +++|++ +.+ ++++|++.++ |++|.+.|+++|.++|+++|+++++| +.++.+.+.. . -..
T Consensus 175 ~~~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~D-ea~~~~~~~~~g~~~~~~~~~~~ 253 (427)
T 2w8t_A 175 FRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVD-EAHSMGFFGPNGRGVYEAQGLEG 253 (427)
T ss_dssp ECTTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEE-CTTTTTTSSTTSCCHHHHTTCTT
T ss_pred eCCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEE-CCccccccCCCCCchHhhcCCCc
Confidence 65 456665 533 7899999887 78999999999999999999999994 4555544321 1 123
Q ss_pred cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHH
Q 001989 348 GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQAL 426 (985)
Q Consensus 348 GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l 426 (985)
++|+++++. |.|+ .|| |++++++++++.+... .+.|. ..++.|. ...
T Consensus 254 ~~di~~~s~sK~~g------~~g-G~v~~~~~l~~~l~~~----------~~~~~------------~~~~~~~---~~~ 301 (427)
T 2w8t_A 254 QIDFVVGTFSKSVG------TVG-GFVVSNHPKFEAVRLA----------CRPYI------------FTASLPP---SVV 301 (427)
T ss_dssp CCSEEEEESSSTTC------SCC-EEEEECCTTGGGGGGT----------CHHHH------------SSCCCCH---HHH
T ss_pred CCcEEEecchhhhc------cCC-CEEEeCHHHHHHHHHh----------ccccc------------ccCCCCH---HHH
Confidence 689999998 8775 234 8999988877665210 00010 0111121 122
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC-CcceEEEecCC---HHHHHHHHHHcCceeeee
Q 001989 427 LANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-FFDTVKVKCAD---AHAIASAAYKIEMNLRVV 502 (985)
Q Consensus 427 ~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~ 502 (985)
.+..+++ ..+. .++++.++..++.+++++.|+++| +++...+ ....+.+.+++ ..++.+.|.++||.+...
T Consensus 302 aa~~~al--~~~~--~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~ 376 (427)
T 2w8t_A 302 ATATTSI--RKLM--TAHEKRERLWSNARALHGGLKAMG-FRLGTETCDSAIVAVMLEDQEQAAMMWQALLDGGLYVNMA 376 (427)
T ss_dssp HHHHHHH--HHHT--SCHHHHHHHHHHHHHHHHHHHHHT-CEESCSSCCSSEEEEEESSHHHHHHHHHHHHHTTEECEEE
T ss_pred HHHHHHH--HHHh--cCHHHHHHHHHHHHHHHHHHHHcC-CcccCCCCCCCEEEEEECCHHHHHHHHHHHHHCCeEEeee
Confidence 2222332 3332 257788899999999999999887 8876323 33445566654 778999999999988653
Q ss_pred c-------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 D-------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ~-------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. .+.+|++++..+|++||++++++|.+
T Consensus 377 ~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~ 410 (427)
T 2w8t_A 377 RPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQA 410 (427)
T ss_dssp CTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 2 25899999999999999999999974
No 151
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.79 E-value=1.6e-18 Score=197.19 Aligned_cols=291 Identities=9% Similarity=-0.062 Sum_probs=192.4
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cccc-eecCcHHHHHHHHHHHHHHHHHhcCCCC--CCEEEEcCCCCcccHHHHHHCCc
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHH--RNVCIIPVSAHGTNPATAAMCGM 702 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~--~~~IIv~~~~Hg~~~~~a~~~G~ 702 (985)
+|..++.+++.+++++.+|. +... ++.++|++++..++.++. .+ +++|+++.+.|..+...++..|+
T Consensus 59 ~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~--------~~~~gd~vl~~~p~~~~~~~~~~~~g~ 130 (376)
T 3ezs_A 59 AFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVL--------FDYQNPTIAYPNPFYQIYEGAAKFIKA 130 (376)
T ss_dssp TCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHT--------TTCSSCEEEEEESCCTHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHc--------CCCCCCEEEEecCCcHhHHHHHHHcCC
Confidence 45566677777788777887 4443 455667776654444332 35 78999988888777777888999
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEccccccc-cCCCC
Q 001989 703 KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VGLTS 778 (985)
Q Consensus 703 ~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~l~~ 778 (985)
+++.+|+++++.+++ +|++++. +++++|++++|+ ++|.+.+ ++++|.++|+++|+++|+|+++.... .+...
T Consensus 131 ~~~~~~~~~~~~~~~-~l~~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~ 206 (376)
T 3ezs_A 131 KSLLMPLTKENDFTP-SLNEKEL---QEVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPP 206 (376)
T ss_dssp EEEEEECCGGGTSCC-CCCHHHH---HHCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCC
T ss_pred EEEEcccCCCCCcch-hHHhhhc---cCCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCC
Confidence 999999977655555 7778887 578889999985 6998861 37788888999999999999985211 11000
Q ss_pred C-C---------ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 779 P-G---------YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 779 p-g---------~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
+ . ..+.++++.|++|+|+. .|.++|++++++++.+.+.... ...+.+.
T Consensus 207 ~~~~~~~~~~~~~~~~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~------------~~~~~~~------ 264 (376)
T 3ezs_A 207 SLLEACMLAGNEAFKNVLVIHSLSKRSSA----PGLRSGFIAGDSRLLEKYKAFR------------AYLGYTS------ 264 (376)
T ss_dssp CHHHHHHHTTCTTCTTEEEEEESTTTTTC----GGGCCEEEEECHHHHHHHHHHH------------TTTCCCC------
T ss_pred CHHHccccccccccCcEEEEecchhccCC----ccceeEEEeeCHHHHHHHHHHH------------hhhcCCC------
Confidence 0 0 35677999999999854 3667899998877665442110 0001111
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~ 928 (985)
+.....++.+.+.. .+.+.+..++..++.+++.+.|+ ++. . +....+ +.++++ +..++.++|.
T Consensus 265 ~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~-~~~--~--~~~~~~--~~~~~~--------~~~~~~~~l~ 327 (376)
T 3ezs_A 265 ANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIFK-NTL--I--YPYSFY--VYLPVQ--------NGENFAKTLY 327 (376)
T ss_dssp CHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHST-TCC--C--CSBSSE--EEEECS--------CHHHHHHHHH
T ss_pred ChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhc-CCC--C--CCcceE--EEEECC--------CHHHHHHHHH
Confidence 11222223333432 23456666777888888888887 333 1 112222 234442 5788999998
Q ss_pred H-CCCccCCCC-C----CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 929 D-YGFHGPTMS-W----PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 929 ~-~Gi~~~~~~-~----p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+ +||.+.... + ...+++||+++. |++||++ +++.|++++++
T Consensus 328 ~~~gi~v~~g~~~~~~~~~~~~iRis~~~--~~~~i~~--~l~~l~~~l~~ 374 (376)
T 3ezs_A 328 QNEGIITLPALYLGRNRIGADYVRLALVY--DTPLLEK--PLEIIETYREN 374 (376)
T ss_dssp HHHCCBCEEGGGGCSTTTTTTEEEEECCS--CHHHHHH--HHHHHHHHHCC
T ss_pred HhCCEEEeCcHHhCCCCCCCCeEEEEEcC--CHHHHHH--HHHHHHHHHHh
Confidence 8 899875321 1 135899999874 9999999 77888887764
No 152
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.79 E-value=1.4e-18 Score=196.97 Aligned_cols=298 Identities=11% Similarity=0.068 Sum_probs=188.4
Q ss_pred hHHHHHHHHHHHHHHHhCCCcc-c--eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccH--HHHHHCCcE
Q 001989 629 GYQEMFNNLGEWLCTITGFDSF-S--LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP--ATAAMCGMK 703 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~~~-~--~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~--~~a~~~G~~ 703 (985)
+..+..+++++++++++|.+.. . ++.++|++++..++. .+. .++|+||+++..|..+. ..++..| +
T Consensus 46 ~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~---~l~-----~~gd~vl~~~~~~~~~~~~~~~~~~g-~ 116 (362)
T 2c0r_A 46 VYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPM---NFL-----KEGQTANYVMTGSWASKALKEAKLIG-D 116 (362)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHH---HHC-----CTTCEEEEEECSHHHHHHHHHHHHHS-C
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHH---hcC-----CCCCeEEEEecCcHhHHHHHHHHHhC-C
Confidence 4456788999999999999752 3 344666666644443 321 36788887654332322 2345678 9
Q ss_pred EEEEcCCC---CC-CCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccc-ccCHHHHHHHHHHcCCEEEEEccccccccCCC
Q 001989 704 IVSVGTDA---KG-NINIEELRKAAEANRDNLSTLMVTYP-STHGVY-EEGIDEICKIIHDNGGQVYMDGANMNAQVGLT 777 (985)
Q Consensus 704 vv~v~~d~---~g-~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i-~~di~eI~~la~~~galliVD~a~~~~~~~l~ 777 (985)
++.++++. .+ .+|.++++ ++ ++|++|++++| |++|.+ . |+++| +|+++++|++|..+...+
T Consensus 117 ~~~v~~~~~~~~~~~~~~~~~~--i~---~~t~~v~~~~~~n~tG~~~~-~l~~i------~~~~vivD~a~~~~~~~~- 183 (362)
T 2c0r_A 117 THVAASSEASNYMTLPKLQEIQ--LQ---DNAAYLHLTSNETIEGAQFK-AFPDT------GSVPLIGDMSSDILSRPF- 183 (362)
T ss_dssp EEEEEECGGGTTCSCCCGGGCC--CC---TTEEEEEEESEETTTTEECS-SCCCC------TTSCEEEECTTTTTSSCC-
T ss_pred eEEEecccccccccCCCHHHcc--cC---CCcCEEEEeCCcCccceecc-ccccc------CCCEEEEEChhhccCCcc-
Confidence 99998762 22 35776654 55 78999999987 579995 6 78887 799999999986443221
Q ss_pred CCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCC---ccccCCCCCCCCCCCCCCCCCCcchhhhHHHH
Q 001989 778 SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSH---PVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 778 ~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~---~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~ 854 (985)
...+ .|++++++||+|+ .+|+|++++++++.+.+... ++.... .. ......++.. .....
T Consensus 184 ~~~~--~d~~~~s~~K~~g------~~G~G~l~~~~~~~~~l~~~~~~~~~~~~--~~-~~~~~~~t~~------~~~~~ 246 (362)
T 2c0r_A 184 DLNQ--FGLVYAGAQKNLG------PSGVTVVIVREDLVAESPKHLPTMLRYDT--YV-KNNSLYNTPP------SFGIY 246 (362)
T ss_dssp CGGG--CSEEEEETTTTTC------CSSCEEEEEEGGGSSSCCTTSCGGGCHHH--HH-HTTTCSSCCC------HHHHH
T ss_pred chhH--CcEEEEecccccc------CcCcEEEEEcHHHHhhccccCchHHhHHH--Hh-hccCcCCCch------HHHHH
Confidence 1222 4999999999984 34689999998877655321 110000 00 0000011111 11222
Q ss_pred HHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHhhc-c-C-CeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC
Q 001989 855 ISYTYIAMMGSK-GLTEASKIAILNANYMAKRLEK-H-Y-PILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY 930 (985)
Q Consensus 855 ~a~a~l~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~-g-~-~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~ 930 (985)
++.+++..+..+ ++.++.++..++++++.++|++ + + ++.. .+.......+.+.++ .+.+..+++++|.++
T Consensus 247 a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~L~~~ 320 (362)
T 2c0r_A 247 MVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCV-DVDSRSDMNITFRLA-----SEELEKEFVKASEQE 320 (362)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESS-CGGGBCSSEEEEECS-----CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCC-ChHHcCCcEEEEEcC-----CcchHHHHHHHHHHC
Confidence 334555555554 7888888899999999999987 3 3 3321 110011112345543 123567899999999
Q ss_pred CCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 931 GFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 931 Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
||.+..- .+..+.+|||+...+|+||+++ +++.|++++++.
T Consensus 321 gi~~~~g-~~~~~~iRis~~~~~~~e~i~~--l~~~l~~~~~~~ 361 (362)
T 2c0r_A 321 GFVGLKG-HRSVGGLRASIYNAVPYESCEA--LVQFMEHFKRSR 361 (362)
T ss_dssp TEESCBC-CTTTCSEEEECCTTSCHHHHHH--HHHHHHHHHHHH
T ss_pred CCeeccC-CCCCCEEEEECCCCCCHHHHHH--HHHHHHHHHHhc
Confidence 9976421 1223689999999999999999 778888887654
No 153
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.79 E-value=4.8e-18 Score=194.70 Aligned_cols=284 Identities=14% Similarity=0.147 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHH-HhcCC-CCCCEEEEcC-CCCcccHHHHHHCC---------
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYH-KARGD-HHRNVCIIPV-SAHGTNPATAAMCG--------- 701 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~-~~~g~-~~~~~IIv~~-~~Hg~~~~~a~~~G--------- 701 (985)
..++++++++++|.+ ..++.++|++|++.++.+++.+. ..+|. .++++||++. .+|+.........+
T Consensus 80 ~~~l~~~la~~~g~~-~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (392)
T 3ruy_A 80 LGPWYEKVAKLTNKE-MVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFG 158 (392)
T ss_dssp HHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCC
T ss_pred HHHHHHHHHHhcCCC-EEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccC
Confidence 568889999999954 34667889988877777665431 12222 2356888854 45566555443322
Q ss_pred ---cEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccc
Q 001989 702 ---MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 702 ---~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~ 773 (985)
.++..++.+ |+++|+++++ +++++|++++| |++|.+. | +++|.++|+++|+++|+|++|. ++
T Consensus 159 ~~~~~~~~~~~~-----d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~~~~~l~~i~~l~~~~~~~li~De~~~-~~ 228 (392)
T 3ruy_A 159 PMLPGIIVIPYG-----DLEALKAAIT---PNTAAFILEPIQGEAGINI-PPAGFLKEALEVCKKENVLFVADEIQT-GL 228 (392)
T ss_dssp SCCSSEEEECTT-----CHHHHHHHCC---TTEEEEEECSSBSTTTSBC-CCTTHHHHHHHHHHTTTCEEEEECTTT-TT
T ss_pred CCCCCCeeeCcc-----cHHHHHHHhc---cCeEEEEEeCccCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEeechh-CC
Confidence 135556653 8999999997 79999999998 5799997 6 9999999999999999999984 22
Q ss_pred cCCCCC---C--ccCCcEEEeCCcccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcch
Q 001989 774 VGLTSP---G--YIGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 774 ~~l~~p---g--~~g~Di~~~s~hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~ 847 (985)
+....+ . ...+|++++| |+++ || .++|++++++++.+.+.....+ .+.+.
T Consensus 229 ~~~g~~~~~~~~~~~~d~~~~S--K~l~-----gG~~~~G~~~~~~~~~~~~~~~~~~--------------~~~~~--- 284 (392)
T 3ruy_A 229 GRTGKVFACDWDNVTPDMYILG--KALG-----GGVFPISCAAANRDILGVFEPGSHG--------------STFGG--- 284 (392)
T ss_dssp TTTSSSSGGGGGTCCCSEEEEC--GGGG-----TTTSCCEEEEECHHHHTTCCTTSSC--------------CSSTT---
T ss_pred CccccchhhhccCCCCCEEEEc--hhhh-----CChhhhEEEEECHHHHhhhccCCcC--------------CCCCC---
Confidence 111111 1 2346888775 8763 34 6789999988776655422100 01111
Q ss_pred hhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCC-eeecCCCCceeeEEEEEecCccccCCCCHHHHHH
Q 001989 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYP-ILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAK 925 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~-l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~ 925 (985)
++..+.++.+.+..+.. .+..++..++++++.+.|++ +.. +....+.+. .+.+.++ + +..++.+
T Consensus 285 -~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~---~~~~~~~------~-~~~~l~~ 350 (392)
T 3ruy_A 285 -NPLACAVSIAALEVLEE---EKLTERSLQLGEKLVGQLKEIDNPMITEVRGKGL---FIGIELN------E-PARPYCE 350 (392)
T ss_dssp -CHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTTCCCTTEEEEEEETT---EEEEEES------S-CSHHHHH
T ss_pred -CHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHhcCCCceEEEeeee---EEEEEEc------c-hHHHHHH
Confidence 23333444455555433 34455677888999999986 322 211111111 1334443 2 5678999
Q ss_pred HHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 926 RLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 926 ~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
.|.++||.+.... .+.+|++++..+|++|+++ +++.|++++
T Consensus 351 ~l~~~gi~v~~~~---~~~iRi~~~~~~~~~~i~~--~~~~l~~~l 391 (392)
T 3ruy_A 351 QLKAAGLLCKETH---ENVIRIAPPLVISEEDLEW--AFQKIKAVL 391 (392)
T ss_dssp HHHTTTEECCCBT---TTEEEECCCTTCCHHHHHH--HHHHHHHHH
T ss_pred HHHHCCcEEecCC---CCEEEEECCCCCCHHHHHH--HHHHHHHHh
Confidence 9999999886433 4799999999999999999 777777764
No 154
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.79 E-value=8.4e-19 Score=198.71 Aligned_cols=280 Identities=11% Similarity=0.047 Sum_probs=189.2
Q ss_pred HHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++.+++++|.+... ++.++|++|+..++.++. .++|+|+++.+.|..+...++..|++++.+|+++++
T Consensus 68 ~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~ 139 (360)
T 3hdo_A 68 QKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFA--------AEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTGDF 139 (360)
T ss_dssp HHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCTTS
T ss_pred HHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHHh--------CCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCCCC
Confidence 37888999999977654 455667766654444331 467899999887877777788899999999997665
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCC---CCccCCcEEEe
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS---PGYIGADVCHL 789 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~---pg~~g~Di~~~ 789 (985)
.+ +++++.+ ++++|++++| |++|.+. |+++|.++|+++|+++++|++|.. +.+-.. ....+.++++.
T Consensus 140 ~~--~~l~~~~-----~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~i~~~ 210 (360)
T 3hdo_A 140 RI--AGFPERY-----EGKVFFLTTPNAPLGPSF-PLEYIDELARRCAGMLVLDETYAE-FAESNALELVRRHENVVVTR 210 (360)
T ss_dssp SB--TTCCSSB-----CSSEEEEESSCTTTCCCC-CHHHHHHHHHHBSSEEEEECTTGG-GSSCCCTHHHHHCSSEEEEE
T ss_pred CH--HHHHhhc-----CCCEEEEeCCCCCCCCCc-CHHHHHHHHHHCCCEEEEECChHh-hCCcchhHHhccCCCEEEEe
Confidence 55 4443322 3458888998 5699998 899999999999999999999852 221110 01234568888
Q ss_pred CCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHH
Q 001989 790 NLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 790 s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~ 869 (985)
|++|+|+. +|.++|++++++++.+.+.... ...+ . +.....++.+++.. .+.+.
T Consensus 211 s~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~--------------~~~~--~----~~~~~~a~~~~l~~--~~~~~ 264 (360)
T 3hdo_A 211 TLSKSYSL----AGMRIGLAIARPEVIAALDKIR--------------DHYN--L----DRLAQAACVAALRD--QAYLS 264 (360)
T ss_dssp ESTTTTSC----TTSCCEEEECCHHHHHHHHHHS--------------CSCC--S----CHHHHHHHHHHHHC--HHHHH
T ss_pred cchHhhcC----CccceeeEeeCHHHHHHHHHhC--------------CCCC--C----CHHHHHHHHHHhcC--HHHHH
Confidence 99999854 3678899998877665442110 0001 1 12222333344442 34567
Q ss_pred HHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC-CCCCEEEE
Q 001989 870 EASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW-PVPGTLMI 947 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~-p~~~~lri 947 (985)
+..++..++++++.+.|++ ++.+ ..+.+. + +.+.++ +.+..++.+.|.++||.+..... ..++++||
T Consensus 265 ~~~~~~~~~~~~l~~~L~~~~~~~--~~~~~~-~--~~~~~~------~~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRi 333 (360)
T 3hdo_A 265 ECCRRIRETREWFTTELRSIGYDV--IPSQGN-Y--LFATPP------DRDGKRVYDGLYARKVLVRHFSDPLLAHGMRI 333 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEE--CCCSSS-E--EEEECT------TCCHHHHHHHHHHTTEECBCCCSTTTTTSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEE--cCCCcc-E--EEEECC------CCCHHHHHHHHHHCCEEEEECCCCCCCCEEEE
Confidence 7777788889999999987 4433 222222 2 334543 45788999999999999865432 23589999
Q ss_pred eccCCCCHHHHHHHHccCChhHHHHh
Q 001989 948 EPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 948 s~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+++ +++|+|+ ++++|+++.+.
T Consensus 334 s~~---~~~e~~~--l~~al~~~~~~ 354 (360)
T 3hdo_A 334 SIG---TREEMEQ--TLAALKEIGEG 354 (360)
T ss_dssp ECC---CHHHHHH--HHHHHHHHHC-
T ss_pred EcC---CHHHHHH--HHHHHHHHhcc
Confidence 985 9999999 76777766543
No 155
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.79 E-value=7e-18 Score=193.61 Aligned_cols=289 Identities=13% Similarity=0.121 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHH-----------
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAM----------- 699 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~----------- 699 (985)
+...++++++++++|.+. .++.++|++|++.++.+++.+...+| .++++||+ ...+||........
T Consensus 78 ~~~~~l~~~la~~~~~~~-v~~~~gg~ea~~~al~~~~~~~~~~g-~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 155 (395)
T 3nx3_A 78 ENIAAAAKNLAKASALER-VFFTNSGTESIEGAMKTARKYAFNKG-VKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFK 155 (395)
T ss_dssp HHHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHHHHHHHTT-CTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGC
T ss_pred HHHHHHHHHHHHhcCCCe-EEEeCCHHHHHHHHHHHHHHHhhccC-CCCCEEEEEcCCcCCCCHHHHhhcCCcccccccC
Confidence 346688899999998543 46678899999888887776544444 35677777 55677765444322
Q ss_pred -CCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccc
Q 001989 700 -CGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 700 -~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~ 773 (985)
.+.++..+|.+ |+++|+++++ +++++|+++.+ ++.|.+. + +++|+++|+++|+++|+|++|. ++
T Consensus 156 ~~~~~~~~~~~~-----d~~~l~~~l~---~~~~~v~~~~~~~~~G~~~-~~~~~l~~l~~l~~~~~~~li~Dev~~-~~ 225 (395)
T 3nx3_A 156 PLISGVKFAKYN-----DISSVEKLVN---EKTCAIILESVQGEGGINP-ANKDFYKALRKLCDEKDILLIADEIQC-GM 225 (395)
T ss_dssp SCCSCEEEECTT-----CHHHHHTTCC---TTEEEEEEESEECTTSCEE-CCHHHHHHHHHHHHHHTCEEEEECTTT-TT
T ss_pred CCCCCcEEeCCC-----CHHHHHHhcc---CCeEEEEEeCccCCCCccc-CCHHHHHHHHHHHHHcCCEEEEEeccc-CC
Confidence 23467777764 8999999997 78998888775 4678776 4 9999999999999999999874 22
Q ss_pred cCCCCC-----CccCCcEEEeCCcccccccCCCCCCceEEEEEcccc-cCcCCCCccccCCCCCCCCCCCCCCCCCCcch
Q 001989 774 VGLTSP-----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHL-APFLPSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 774 ~~l~~p-----g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l-~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~ 847 (985)
+....+ ....+|++++| |+|+ +|.++|++++++++ .+.+.....+ .+.+
T Consensus 226 g~~g~~~~~~~~~~~~d~~t~s--K~~~-----~G~~~G~~~~~~~~~~~~~~~~~~~--------------~~~~---- 280 (395)
T 3nx3_A 226 GRSGKFFAYEHAQILPDIMTSA--KALG-----CGLSVGAFVINQKVASNSLEAGDHG--------------STYG---- 280 (395)
T ss_dssp TTTSSSSGGGGGTCCCSEEEEC--GGGT-----TTSCCEEEEECHHHHHHHSCTTCCS--------------SCBS----
T ss_pred CcCCcchhHHhcCCCCCEEEec--cccc-----CCCceEEEEEchhhhhhhcCCcccC--------------CCCC----
Confidence 111111 12246887764 8874 35789999999887 6555321111 0111
Q ss_pred hhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CC-eeecCCCCceeeEEEEEecCccccCCCCHHHH
Q 001989 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YP-ILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDV 923 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~-l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v 923 (985)
+++..++++.+.+..+..+.+ .++..++.+++++.|++. +. +......+. .+.+.+.. ..+..++
T Consensus 281 ~~~~~~~aa~aal~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~---~~~~~~~~-----~~~~~~~ 349 (395)
T 3nx3_A 281 GNPLVCAGVNAVFEIFKEEKI---LENVNKLTPYLEQSLDELINEFDFCKKRKGLGF---MQGLSLDK-----SVKVAKV 349 (395)
T ss_dssp CCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETT---EEEEEECT-----TSCHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHhCCCeEEEEeEEE---EEEEEeCC-----cchHHHH
Confidence 133444445555665544333 345556667777777541 22 111100111 13345441 2367899
Q ss_pred HHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 924 AKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 924 ~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.+.|.++|+.+.... .+.+||+++..+|++|+++ +++.|++++++
T Consensus 350 ~~~l~~~Gi~v~~~~---~~~iRi~~~~~~t~e~i~~--~l~~l~~~l~~ 394 (395)
T 3nx3_A 350 IQKCQENALLLISCG---ENDLRFLPPLILQKEHIDE--MSEKLRKALKS 394 (395)
T ss_dssp HHHHHHTTEECEEET---TTEEEECCCTTCCHHHHHH--HHHHHHHHHHT
T ss_pred HHHHHHCCCEEecCC---CCEEEEECCCCCCHHHHHH--HHHHHHHHHHh
Confidence 999999999876433 4799999999999999999 78888888764
No 156
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.79 E-value=9.7e-19 Score=201.66 Aligned_cols=303 Identities=14% Similarity=0.038 Sum_probs=196.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--ccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--SFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+++.+++.+.+|.+ ... ++.++|++|+..++.++. .++++|++++..|..+...++..|+++
T Consensus 78 ~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~ 149 (406)
T 1xi9_A 78 EGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALL--------DPGDEILVPGPSYPPYTGLVKFYGGKP 149 (406)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHHTTCEE
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhC--------CCCCEEEEcCCCCccHHHHHHHcCCEE
Confidence 455555666666666666543 333 455666666654444331 367899998887777666778899999
Q ss_pred EEEcCCC--CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cC-CC
Q 001989 705 VSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VG-LT 777 (985)
Q Consensus 705 v~v~~d~--~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~-~~-l~ 777 (985)
+.+|+++ ++.+|+++|+++++ +++++|++++| |++|.+. .++++|.++|+++|+++++|+++.... ++ ..
T Consensus 150 ~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~ 226 (406)
T 1xi9_A 150 VEYRTIEEEDWQPDIDDIRKKIT---DRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHI 226 (406)
T ss_dssp EEEEEEGGGTSEECHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCC
T ss_pred EEeecCCCcCCcCCHHHHHHhhC---cCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCC
Confidence 9999864 35689999999997 68999999998 4799885 149999999999999999999985321 11 00
Q ss_pred CCCc--cCC-cEEEeCCcccccccCCCCCCceEEEE--Ecc----cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 778 SPGY--IGA-DVCHLNLHKTFCIPHGGGGPGMGPIG--VKK----HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 778 ~pg~--~g~-Di~~~s~hK~l~~p~g~GGPg~G~i~--~~~----~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
.... .+. |+++.|+||+|+. +|.++|+++ +++ ++.+.+.... ... .+. +.
T Consensus 227 ~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~l~~~l~~~~------------~~~-~~~--~~-- 285 (406)
T 1xi9_A 227 SPGSLTKDVPVIVMNGLSKVYFA----TGWRLGYMYFVDPENKLSEVREAIDRLA------------RIR-LCP--NT-- 285 (406)
T ss_dssp CHHHHCSSSCEEEEEESTTTTCC----GGGCCEEEEEECTTCTTHHHHHHHHHHH------------HHT-CCS--CS--
T ss_pred CHHHcCCCceEEEEeccccccCC----CccEEEEEEEecCchhHHHHHHHHHHHH------------Hhh-cCC--CH--
Confidence 1112 245 7889999999853 245689988 777 6554432100 000 111 11
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~ 928 (985)
....++.++|.. +.+.+.+..++..++++++.+.|++...+....+.+..+ +.+.++.. .+.+..++.++|.
T Consensus 286 --~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~l~~~l~ 357 (406)
T 1xi9_A 286 --PAQFAAIAGLTG-PMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFY--IFPKIEVG---PWKNDKEFVLDVL 357 (406)
T ss_dssp --HHHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSE--ECCEECSC---SCSSHHHHHHHHH
T ss_pred --HHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCeeEE--EEEecCcc---CCCCHHHHHHHHH
Confidence 112223334432 344566777778888999999998632332222222222 22344310 0346788999987
Q ss_pred -HCCCccCCC-CCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 929 -DYGFHGPTM-SWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 929 -~~Gi~~~~~-~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
++||.+... .+. ..+.+||++. +++++|++ +++.|+++++++
T Consensus 358 ~~~gi~v~~g~~f~~~~~~~lRis~~--~~~~~i~~--~~~~l~~~l~~~ 403 (406)
T 1xi9_A 358 HNAHVLFVHGSGFGEYGAGHFRAVFL--PPIEILEE--AMDRFEKFMKER 403 (406)
T ss_dssp HHHCEECEEGGGGCGGGTTBEEEECC--SCHHHHHH--HHHHHHHHHHHC
T ss_pred HhCCEEEeCchhcCCCCCCEEEEEec--CCHHHHHH--HHHHHHHHHHHH
Confidence 889987532 222 2479999997 89999999 778888888765
No 157
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.79 E-value=6.6e-18 Score=192.37 Aligned_cols=291 Identities=13% Similarity=0.039 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHhcCCC----CcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCC--hhHHHHHHHhhcCCCeEEEE
Q 001989 212 SLLNFQTMIADLTGLP----MSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCH--PQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~----~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H--~s~~~~~~~~a~~~gi~v~~ 285 (985)
...++++.++++++.. +.++.+++|+|.+++.++.++....++||+|++.+..+ .++...+ +..|++++.
T Consensus 39 ~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~----~~~g~~~~~ 114 (385)
T 2bkw_A 39 IFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCL----RSYGAQVDV 114 (385)
T ss_dssp HHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHH----HHTTCEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHHHHHH----HHcCCceEE
Confidence 4455677888887764 46788899999888877766521013789998875533 3322333 345888888
Q ss_pred eCc---------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHhC--CcEEEEEecCccccCCC-CCCcccce
Q 001989 286 SDL---------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHAN--GVKVVMATDLLALTILK-PPGELGAD 350 (985)
Q Consensus 286 v~~---------~~l~~-l~~-~t~~V~v~~p-n~~G~v~di~~I~~~a~~~--galliV~a~~~~lg~l~-~~~~~GaD 350 (985)
++. ++|++ +++ ++++|++++| |.+|.+.|+++|.++||++ |+++++| +..+.|... +..++|+|
T Consensus 115 v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D-~a~~~~~~~~~~~~~~~d 193 (385)
T 2bkw_A 115 VRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVD-AVCSIGCEEFEFDEWGVD 193 (385)
T ss_dssp ECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEE-CTTTTTTSCCCTTTTTCS
T ss_pred EecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEE-CccccCCccccccccCce
Confidence 765 24555 554 7899999987 7899999999999999999 9999995 344555432 34668999
Q ss_pred EEEecC-ccccccCCCCCCcEEEEEEchhhHh-cC------CCceeeeeecCCCCcceeeecccccccccccc------c
Q 001989 351 IVVGSA-QRFGVPMGYGGPHAAFLATSQEYKR-MM------PGRIVGVSIDSSGKPALRVAMQTREQHIRRDK------A 416 (985)
Q Consensus 351 i~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~-~l------p~~~vG~t~d~~g~~~~~l~l~tre~~irre~------a 416 (985)
++++++ |+++ |+||+|++++++++++ .+ +++..|. .. ..+ +....+.+. +
T Consensus 194 ~~~~s~~K~~~-----~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~------~~---~~~--~~~~~~~~~~~~~~~~ 257 (385)
T 2bkw_A 194 FALTASQKAIG-----APAGLSISLCSSRFMDYALNDSKNGHVHGYFS------SL---RRW--TPIMENYEAGKGAYFA 257 (385)
T ss_dssp EEEEESSSTTC-----CCSCEEEEEECHHHHHHHTCHHHHCCCSCSTT------CH---HHH--HHHHHHHHTTCCCCSS
T ss_pred EEEecCccccc-----cCCcceEEEEcHHHHHHHHhhccCCCCCceee------cH---HHH--hhHHHhhhccCCCCCC
Confidence 999998 6674 3456899999998876 55 2221110 00 000 000001111 2
Q ss_pred CCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHH-hcCCCeEEcC-CC----CcceEEEecCCHHHHHH
Q 001989 417 TSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGL-KKLGTVEVQG-LP----FFDTVKVKCADAHAIAS 490 (985)
Q Consensus 417 tsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L-~~~g~~~~~~-~~----~~~~~~~~~~~~~~v~~ 490 (985)
|.|+ ....++.+++ .++...|++++.++..++++++.+.| +++| +++.. .+ ....+.+..++..++.+
T Consensus 258 ~~~~---~~~~a~~~al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (385)
T 2bkw_A 258 TPPV---QLINSLDVAL--KEILEEGLHKRWDLHREMSDWFKDSLVNGLQ-LTSVSRYPSNMSAHGLTAVYVADPPDVIA 331 (385)
T ss_dssp CCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHTTTC-CEESSCSSSTTBCSSCEEEECSCHHHHHH
T ss_pred CCCH---HHHHHHHHHH--HHHHHccHHHHHHHHHHHHHHHHHHHHHhcC-ceecccCcccccCCceEEEecCCHHHHHH
Confidence 3333 2333444443 44444578899999999999999999 8886 88874 21 23446677666778999
Q ss_pred HHHHcCceeeee-----cCCeEEEE-ecc---CCCHHHHHHHHHHHhC
Q 001989 491 AAYKIEMNLRVV-----DSNTVTAS-FDE---TTTLEDVDKLFIVFAG 529 (985)
Q Consensus 491 ~L~~~GI~~~~~-----~~~~lris-~t~---~~t~edId~li~aL~~ 529 (985)
+|.++||.+... ..+.+|++ +.. .+|++|+++++++|.+
T Consensus 332 ~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~ 379 (385)
T 2bkw_A 332 FLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKL 379 (385)
T ss_dssp HHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHH
T ss_pred HHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHH
Confidence 999999987642 14689999 552 5799999999999974
No 158
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.79 E-value=2e-17 Score=191.34 Aligned_cols=273 Identities=14% Similarity=0.097 Sum_probs=186.3
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~ 290 (985)
.++++.+|+++|.+. +.++.+||+++.+++.++ . ++||+||++...|+++...+..+++..|+++++++. ++
T Consensus 85 ~~le~~lA~l~g~~~--~i~~ssGt~Ai~~al~~l-~--~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~d~~~ 159 (415)
T 2fq6_A 85 FSLQQAMCELEGGAG--CVLFPCGAAAVANSILAF-I--EQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGAD 159 (415)
T ss_dssp HHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHTT-C--CTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGG
T ss_pred HHHHHHHHHHhCCCe--EEEeCCHHHHHHHHHHHH-h--CCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCCCHHH
Confidence 457789999999864 567788887776665543 2 389999999999999999987666678999999875 56
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHh--CCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHA--NGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~--~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
+++ ++++|++|++.+| |.+|.+.|+++|+++||+ +|++++|| +.++.+....|-++|+|++++|+ |.+++|
T Consensus 160 le~ai~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD-~a~a~~~~~~p~~~g~Div~~S~sK~lg~~--- 235 (415)
T 2fq6_A 160 IVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMID-NTWAAGVLFKALDFGIDVSIQAATKYLVGH--- 235 (415)
T ss_dssp GGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEE-CTTTTTTSSCGGGGTCSEEEEETTTTTTCS---
T ss_pred HHHhhccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEE-CCCcccccCCccccCCeEEEEeCccccCCC---
Confidence 666 8889999999988 789999999999999999 99999995 35555555566789999999998 666532
Q ss_pred CCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHH
Q 001989 366 GGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 366 GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~ 445 (985)
|+.-.|++++++++++++.. .++..|+.. .+..+ |+...+.+.+..
T Consensus 236 g~~~~G~l~~~~~~~~~l~~-------------------------~~~~~G~~~----~~~~a-----~~~~~~l~~l~~ 281 (415)
T 2fq6_A 236 SDAMIGTAVCNARCWEQLRE-------------------------NAYLMGQMV----DADTA-----YITSRGLRTLGV 281 (415)
T ss_dssp SSCCCEEEEECTTTHHHHHH-------------------------HHHHTTCCC----CHHHH-----HHHHHHHHHHHH
T ss_pred CCceEEEEEeCHHHHHHHHH-------------------------HHHhcCCCC----CHHHH-----HHHHhhhhHHHH
Confidence 22225889888766544310 011112211 11111 111112234555
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeE-E-cCC----C-----------CcceEEEecCC---HHHHHHHHHHcC---ceee--
Q 001989 446 IAQRVHGLAGTFALGLKKLGTVE-V-QGL----P-----------FFDTVKVKCAD---AHAIASAAYKIE---MNLR-- 500 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~-~-~~~----~-----------~~~~~~~~~~~---~~~v~~~L~~~G---I~~~-- 500 (985)
..++..+++.++++.|++.+.++ + +.. + ....+.|.+++ ..+..+.|...+ |.++
T Consensus 282 r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s~G 361 (415)
T 2fq6_A 282 RLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWG 361 (415)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEeccCC
Confidence 66777888999999998874344 2 111 1 22356676654 334433333323 2111
Q ss_pred -------e--------------e--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 501 -------V--------------V--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 501 -------~--------------~--~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. . .++.||+|++..+++++|+.|.++|..
T Consensus 362 ~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 362 GYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp SSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred CCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 0 1 147899999999999999999999974
No 159
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.79 E-value=2.6e-18 Score=198.47 Aligned_cols=302 Identities=11% Similarity=0.075 Sum_probs=196.9
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cc--cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DS--FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~--~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+.+.+++.+.+|. +. ..++.++|++|+..++.++. .++++|+++.+.|..+...++..|++
T Consensus 75 ~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~ 146 (412)
T 2x5d_A 75 RGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATL--------DHGDTILVPNPSYPIHIYGAVIAGAQ 146 (412)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHHHTCE
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHcCCE
Confidence 35444454555555555585 32 33556677777654444331 36789999888777776677788999
Q ss_pred EEEEcCCCC-C-CCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEcccccccc-CC-
Q 001989 704 IVSVGTDAK-G-NINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQV-GL- 776 (985)
Q Consensus 704 vv~v~~d~~-g-~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~~~-~l- 776 (985)
++.+|++++ + .+|+++|+++++ +++++|++++|+ ++|.+.+ ++++|.++|+++|+++++|+++....- +-
T Consensus 147 ~~~~~~~~~~~~~~d~~~l~~~i~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~ 223 (412)
T 2x5d_A 147 VRSVPLVPGIDFFNELERAIRESI---PKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWK 223 (412)
T ss_dssp EEEEECSTTSCHHHHHHHHHHTEE---SCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC
T ss_pred EEEeecCCccCCCCCHHHHHHhcc---cCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC
Confidence 999998764 3 378999999987 678899999985 6898852 478999999999999999999853220 10
Q ss_pred -CCCC----ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhH
Q 001989 777 -TSPG----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 777 -~~pg----~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~ 851 (985)
.... ..+.|+++.|+||+|+. +|.++|++++++++.+.+...... .+.+. +..
T Consensus 224 ~~~~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~l~~~~~~------------~~~~~------~~~ 281 (412)
T 2x5d_A 224 APSIMQVPGAKDIAVEFFTLSKSYNM----AGWRIGFMVGNPELVSALARIKSY------------HDYGT------FTP 281 (412)
T ss_dssp CCCGGGSTTGGGTEEEEEECC-CCSC----TTSCCEEEEECHHHHHHHHHHHHH------------HCCCC------CHH
T ss_pred CCChhhccCccCcEEEEecCccccCC----cccceEEEEcCHHHHHHHHHHHhh------------hccCC------CHH
Confidence 0111 14678999999999854 356789999987765544211000 00111 112
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCC---CHHHHHHHH
Q 001989 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGI---EPEDVAKRL 927 (985)
Q Consensus 852 ~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~---~~~~v~~~L 927 (985)
...++.++|.. +.+.+.+..++..++++++.+.|++ ++.+. .+.+..+ +.+.++ .+. +..++.++|
T Consensus 282 ~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~g~~--~~~~~~-----~~~~~~~~~~~~~~l 351 (412)
T 2x5d_A 282 LQVAAIAALEG-DQQCVRDIARQYQQRRDVLVKGLREAGWMVE--NPKASMY--VWAKIP-----EPYAHLGSLEFAKKL 351 (412)
T ss_dssp HHHHHHHHHHS-CSHHHHHHHHHHHHHHHHHHHHHHHHTCCCC--CCSBSSE--EEEECC-----TTTGGGCHHHHHHHH
T ss_pred HHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCEec--CCCeeeE--EEEEcC-----CccCCCCHHHHHHHH
Confidence 22223344442 3345677777788889999999987 44442 2222222 335553 133 678899998
Q ss_pred HH-CCCccCCCC-CC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 928 MD-YGFHGPTMS-WP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 928 ~~-~Gi~~~~~~-~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.+ +||.+.... +. ..+++||+++. ++++|++ +++.|+++++++..
T Consensus 352 ~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~~~l~~--~l~~l~~~l~~~~~ 400 (412)
T 2x5d_A 352 LQDAKVSVSPGIGFGDYGDDHVRFALIE--NRDRLRQ--AVRGIKAMFRADGL 400 (412)
T ss_dssp HHHHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHH--HHHHHHHHHHHTTC
T ss_pred HHHCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHH--HHHHHHHHHHhcCC
Confidence 65 699875322 21 24799999986 8999999 78889988877554
No 160
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.79 E-value=5e-18 Score=189.87 Aligned_cols=161 Identities=13% Similarity=0.070 Sum_probs=124.1
Q ss_pred HHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH----HHCCcEEEEEcCCC
Q 001989 636 NLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA----AMCGMKIVSVGTDA 711 (985)
Q Consensus 636 e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a----~~~G~~vv~v~~d~ 711 (985)
++++.+++++|.+ ..+.+++|++|+..++.++. .++++|+++...|+.+.... +..|++++.++.
T Consensus 2 ~l~~~la~~~g~~-~~i~~~sG~~a~~~~~~~~~--------~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-- 70 (331)
T 1pff_A 2 ALEGKIAKLEHAE-ACAATASGMGAIAASVWTFL--------KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM-- 70 (331)
T ss_dssp HHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHC--------CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT--
T ss_pred hHHHHHHHHhCCC-eEEEeCChHHHHHHHHHHhc--------CCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC--
Confidence 5788999999987 45667778776654444331 36789999988777654443 458999999986
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHH-cCCEEEEEccccccccCCCCCCccCCcEEEe
Q 001989 712 KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHD-NGGQVYMDGANMNAQVGLTSPGYIGADVCHL 789 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~-~galliVD~a~~~~~~~l~~pg~~g~Di~~~ 789 (985)
.|+++|+++++ +++++|++++| |++|.+. |+++|.++|++ +|+++++|++|..+.. ..+.+++.|+++.
T Consensus 71 ---~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~~~~i~~~~~~~~~~~li~D~a~~~~~~--~~~~~~~~d~~~~ 141 (331)
T 1pff_A 71 ---AVPGNIEKHLK---PNTRIVYFETPANPTLKVI-DIEDAVKQARKQKDILVIVDNTFASPIL--TNPLDLGVDIVVH 141 (331)
T ss_dssp ---TSTTHHHHTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHTTSSSCEEEEECTTTHHHH--CCGGGGTCSEEEE
T ss_pred ---CCHHHHHHhhc---CCCeEEEEECCCCCcCccc-CHHHHHHHHhhhcCCEEEEECCCccccc--CChhhcCCcEEEE
Confidence 48899999987 78999999998 4699998 89999999999 9999999999864332 2344678999999
Q ss_pred CCcccccccCCCCCCceEEEEEcc-cccCcC
Q 001989 790 NLHKTFCIPHGGGGPGMGPIGVKK-HLAPFL 819 (985)
Q Consensus 790 s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~l 819 (985)
|+||+|+.| |++.+|++++++ ++.+.+
T Consensus 142 s~~K~~~~~---~~r~~G~~~~~~~~~~~~l 169 (331)
T 1pff_A 142 SATKYINGH---TDVVAGLVCSRADIIAKVK 169 (331)
T ss_dssp ETTTTTSSS---SSCCCEEEEECHHHHHHHH
T ss_pred ECccccCCC---CCceEEEEEeCcHHHHHHH
Confidence 999998533 223378999987 665544
No 161
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.79 E-value=5.2e-18 Score=192.18 Aligned_cols=278 Identities=13% Similarity=0.110 Sum_probs=183.0
Q ss_pred HHHHHHHHHHhCCCccceec-CcHHHHHHHHHHHHHHHHHhcCCCCC-CEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 635 NNLGEWLCTITGFDSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHR-NVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~-~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
.++++.+++++|.+...+.. +++++++..++.++. .++ ++|+++.+.|..+...++..|++++.+|.+++
T Consensus 61 ~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~--------~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~ 132 (356)
T 1fg7_A 61 KAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC--------EPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDN 132 (356)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC--------CTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCTT
T ss_pred HHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHh--------CCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCCCC
Confidence 47888999999988655544 444555544433321 356 89999988787777777888999999998877
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCH---HHHHHHHHHcCCEEEEEcccccccc--CCCC-CCccCCc
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGI---DEICKIIHDNGGQVYMDGANMNAQV--GLTS-PGYIGAD 785 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di---~eI~~la~~~galliVD~a~~~~~~--~l~~-pg~~g~D 785 (985)
+.+|+++|+++++ ++++|++++|+ ++|.+. +. ++|+++|+ +|+++++|+++..... .+.. ...++.+
T Consensus 133 ~~~d~~~l~~~i~----~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 206 (356)
T 1fg7_A 133 WQLDLQGISDKLD----GVKVVYVCSPNNPTGQLI-NPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHL 206 (356)
T ss_dssp SCCCHHHHHTSCT----TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTE
T ss_pred CCCCHHHHHHHhc----CCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCE
Confidence 7899999988874 68999999995 699886 54 55555566 8999999999852211 1111 1334567
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
+++.|++|+|+. +|.++|++++++++.+.+... + .+.+. +.....++ +..+..
T Consensus 207 i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~l~~~------------~--~~~~~------~~~~~~a~---~~~l~~ 259 (356)
T 1fg7_A 207 AILRTLSKAFAL----AGLRCGFTLANEEVINLLMKV------------I--APYPL------STPVADIA---AQALSP 259 (356)
T ss_dssp EEEEESSSTTCC----GGGCCEEEEECHHHHHHHHHH------------S--CSSCS------CHHHHHHH---HHHTSH
T ss_pred EEEecchHhhcC----chhhhEEEEeCHHHHHHHHHh------------c--CCCCC------CHHHHHHH---HHHhcC
Confidence 889999999854 356789999987765543211 0 00011 11222222 233334
Q ss_pred HH---HHHHHHHHHHHHHHHHHHhhccCCe-eecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-C-C
Q 001989 866 KG---LTEASKIAILNANYMAKRLEKHYPI-LFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-S-W 939 (985)
Q Consensus 866 eG---l~~~~~~~~~~a~~l~~~L~~g~~l-~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~-~ 939 (985)
.+ +.+..++..++++++.+.|++...+ ...+. ...+ +.++++ +..++.++|.++||.+..+ . +
T Consensus 260 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~--~~~~~~--------~~~~l~~~L~~~gI~v~~~g~~~ 328 (356)
T 1fg7_A 260 QGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDS-ETNY--ILARFK--------ASSAVFKSLWDQGIILRDQNKQP 328 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCC-SSSE--EEEEET--------THHHHHHHHHHTTEECEECTTST
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCC-CCeE--EEEECC--------CHHHHHHHHHHCCEEEEECCCCC
Confidence 34 5666667788889999999862222 22122 2222 334442 5778999999999997652 2 2
Q ss_pred CCCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 940 PVPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 940 p~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
..++++||++. +++|+++ ++++|++
T Consensus 329 ~~~~~iRis~~---~~~e~~~--~~~~l~~ 353 (356)
T 1fg7_A 329 SLSGCLRITVG---TREESQR--VIDALRA 353 (356)
T ss_dssp TCTTEEEEECC---CHHHHHH--HHHHHHT
T ss_pred CCCCeEEEEeC---CHHHHHH--HHHHHHh
Confidence 23479999995 7899999 5555543
No 162
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.79 E-value=2.5e-18 Score=195.91 Aligned_cols=297 Identities=10% Similarity=0.043 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHHHhC--CCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 632 EMFNNLGEWLCTITG--FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 632 ~~~~e~~~~la~l~G--~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
+..+++++++++.+| .+... ++.++|++++..++.++. .++++|+++.+.|..+...++..|++++.+|
T Consensus 63 ~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~ 134 (383)
T 3kax_A 63 NIGDIICNWTKKQYNWDIQKEWIVFSAGIVPALSTSIQAFT--------KENESVLVQPPIYPPFFEMVTTNNRQLCVSP 134 (383)
T ss_dssp THHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHC--------CTTCEEEECSSCCHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhC--------CCCCEEEEcCCCcHHHHHHHHHcCCEEEecc
Confidence 456678889999998 44444 455666766654444331 4678999998888777777888999999999
Q ss_pred CCCC---CCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEccccccc-cC--CCCC
Q 001989 709 TDAK---GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VG--LTSP 779 (985)
Q Consensus 709 ~d~~---g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~--l~~p 779 (985)
++++ +.+|+++|+++++ +++++|++++|+ ++|.+.+ ++++|.++|+++|+++++|++|.... .+ ....
T Consensus 135 ~~~~~~~~~~d~~~l~~~l~---~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~ 211 (383)
T 3kax_A 135 LQKQNDTYAIDFEHLEKQFQ---QGVKLMLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPF 211 (383)
T ss_dssp CEEETTEEECCHHHHHHHHT---TTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCG
T ss_pred ceecCCcEEEcHHHHHHHhC---cCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeH
Confidence 8643 3489999999996 789999999994 6999861 47777777999999999999984211 11 0011
Q ss_pred Cc-----cCCcEEEeCCcccccccCCCCCCceEEEEE-cccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 780 GY-----IGADVCHLNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 780 g~-----~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~-~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
.. .+.++++.|+||+|+.| |.++|++++ ++++.+.+...... ..+.+. +....
T Consensus 212 ~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~~~~~~~~-----------~~~~~~------~~~~~ 270 (383)
T 3kax_A 212 ASLSEELAARTITCMAPSKTFNIA----GLQASIIIIPNEKLRQAFTSIQYR-----------QGFHGL------NIFAY 270 (383)
T ss_dssp GGSCHHHHTTEEEEECSHHHHTCG----GGCCEEEECCCHHHHHHHHHHHHH-----------TTCCCC------CHHHH
T ss_pred hhcCccccCcEEEEEEChhhccCc----chhheEEEeCCHHHHHHHHHHHhh-----------cccCCC------CHHHH
Confidence 11 13458899999999643 567899987 45555443211000 001111 11222
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCC
Q 001989 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYG 931 (985)
Q Consensus 854 ~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~G 931 (985)
.++.+.+.. +.+.+.+..++..++++++.+.|++ ...+....+.+..+ +.++++. .+.+..++.+.|. ++|
T Consensus 271 ~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~l~~~~g 343 (383)
T 3kax_A 271 TAMQSAYTE-CNDWLNEIRFYIEDNAKFACEYIKDHIPTLSVMKPEGSFL--LWIDCSA----LNLSQDERTKLLEEKGK 343 (383)
T ss_dssp HHHHHHTTT-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCSBSSE--EEEECGG----GCCCHHHHHHHHHHTSC
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCceEE--EEEEccc----cCCCHHHHHHHHHhhCC
Confidence 222333332 3455667777788889999999976 22332222222222 2355541 2467889999998 679
Q ss_pred CccCCC-CC--CCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 932 FHGPTM-SW--PVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 932 i~~~~~-~~--p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
|.+... .+ +..+.+||+++ ++++||++ +++.|++++
T Consensus 344 i~v~~g~~~~~~~~~~iRi~~~--~~~~~i~~--~l~~l~~~l 382 (383)
T 3kax_A 344 IIVEPGEKYGLGGEEHIGINIG--CPRSVLEE--ILNRLRHTF 382 (383)
T ss_dssp EECEESGGGCTTCTTEEEEECS--SCHHHHHH--HHHHHHHHH
T ss_pred EEeECchhhcCCCCCeEEEEEc--CCHHHHHH--HHHHHHHHh
Confidence 987532 12 23489999988 58999999 667777654
No 163
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.79 E-value=5.5e-18 Score=191.31 Aligned_cols=319 Identities=13% Similarity=0.115 Sum_probs=209.2
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCC--cceeeccchHHHHHHHHHHh
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPM--SNASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~--~~~sl~~~~ta~~ea~~~a~ 248 (985)
++.| |...|+.+.+++.+. + ..+.++.. .+.+.++++.+|+++|.+. .++.+++|+|.+++.++.++
T Consensus 8 ~~~g--p~~~~~~v~~a~~~~--~----~~~~~~~~---~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~ 76 (366)
T 1m32_A 8 LTPG--PLTTSRTVKEAMLFD--S----CTWDDDYN---IGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSA 76 (366)
T ss_dssp CSSS--SCCCCHHHHHTTCCC--C----CTTSHHHH---TTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHS
T ss_pred ccCC--CcCCCHHHHHHHhhh--h----cCCCHHHH---HHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHh
Confidence 3555 344777776554432 1 11122211 1446678899999999422 36888999998888777665
Q ss_pred hhhcCCCCEEEEc-CCCChhHH-HHHHHhhcCCCeEEEEeCc--------hhhhc-cCC--CEeEEEEEcC-CCCeeecc
Q 001989 249 NIQKGKKKTFIIA-SNCHPQTI-DICITRADGFDIKVVVSDL--------KDIDY-KSG--DVCGVLVQYP-GTEGEVLD 314 (985)
Q Consensus 249 ~~~~~~g~~Vlv~-~~~H~s~~-~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~--~t~~V~v~~p-n~~G~v~d 314 (985)
. ++||+|++. ...|++.. ..++ ..|++++.++. ++|++ +++ ++++|++.+| |++|.+.|
T Consensus 77 ~---~~gd~vi~~~~~~~~~~~~~~~~----~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~ 149 (366)
T 1m32_A 77 L---GPQDKVLIVSNGAYGARMVEMAG----LMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNP 149 (366)
T ss_dssp C---CTTCCEEEEESSHHHHHHHHHHH----HHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC
T ss_pred c---CCCCeEEEEeCCCccHHHHHHHH----HhCCceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecC
Confidence 2 377887655 47888643 3332 34666666543 45655 543 5788888887 78999999
Q ss_pred HHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeee
Q 001989 315 YGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSI 392 (985)
Q Consensus 315 i~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~ 392 (985)
+++|.++||++|+++++| +.++.+... ...++|+|++++|. |++++ ++|+|++++++++++.+....
T Consensus 150 l~~i~~l~~~~~~~li~D-ea~~~~~~~~~~~~~~~di~~~s~~K~~~~-----~~g~G~~~~~~~~~~~~~~~~----- 218 (366)
T 1m32_A 150 IDEVGALAHRYGKTYIVD-AMSSFGGIPMDIAALHIDYLISSANKCIQG-----VPGFAFVIAREQKLAACKGHS----- 218 (366)
T ss_dssp HHHHHHHHHHHTCEEEEE-CTTTTTTSCCCTTTTTCSEEEEESSSTTCC-----CSSEEEEEEEHHHHTTCTTCC-----
T ss_pred HHHHHHHHHHcCCEEEEE-CCccccCcCccccccCccEEEecCcccccC-----CCceEEEEECHHHHHhhcCCC-----
Confidence 999999999999999995 344554432 23457899999997 76743 346799999999887774311
Q ss_pred cCCCCcceeeecccccccccc----cccCCCccchhHHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHHHHHHHhcCCCe
Q 001989 393 DSSGKPALRVAMQTREQHIRR----DKATSNICTAQALLANMAAMYAVYHGPEG-LKTIAQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 393 d~~g~~~~~l~l~tre~~irr----e~atsni~t~~~l~a~~aa~~l~~~g~~G-l~~i~~~~~~~a~~l~~~L~~~g~~ 467 (985)
..|.+++.......+. ..+|.|. ....++.+++ ..+...| ++++.++..++++++.+.|+++| +
T Consensus 219 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~al--~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~-~ 287 (366)
T 1m32_A 219 -----RSLSLDLYAQWRCMEDNHGKWRFTSPT---HTVLAFAQAL--KELAKEGGVAARHQRYQQNQRSLVAGMRALG-F 287 (366)
T ss_dssp -----SCSTTCHHHHHHHHHHTTTCCSSCCCH---HHHHHHHHHH--HHHHHHTHHHHHHHHHHHHHHHHHHHHHHTT-C
T ss_pred -----CCccccHHHHHhhhcccCCCCCCCCCH---HHHHHHHHHH--HHHHHccCHhHHHHHHHHHHHHHHHHHHHCC-C
Confidence 0121111000000000 0123332 2333344443 4444455 88899999999999999999986 8
Q ss_pred EEcCC--CCcc-eEEEecC---C--HHHHHHHHHHcCceeeee---cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 468 EVQGL--PFFD-TVKVKCA---D--AHAIASAAYKIEMNLRVV---DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 468 ~~~~~--~~~~-~~~~~~~---~--~~~v~~~L~~~GI~~~~~---~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++..+ +... .+.+..+ + ..++.+.|.++||.+... .++.+|++++..+|++|+++++++|.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 360 (366)
T 1m32_A 288 NTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRT 360 (366)
T ss_dssp CBSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred eeccCchhcCceEEEEEcCccCCCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 77643 1222 3555554 3 788999999999988653 357899999999999999999999974
No 164
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.79 E-value=1.4e-18 Score=200.96 Aligned_cols=305 Identities=13% Similarity=0.105 Sum_probs=195.7
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--c-cc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--S-FS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~-~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
.|..++.+++.+++.+.+|.+ . .. ++.++|++++..++.++ ..++++|+++.+.|..+...++..|.+
T Consensus 67 ~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~--------~~~gd~vl~~~p~~~~~~~~~~~~g~~ 138 (422)
T 3fvs_A 67 FGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQAL--------VDEGDEVIIIEPFFDCYEPMTMMAGGR 138 (422)
T ss_dssp TCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHH--------CCTTCEEEEEESCCTTHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHH--------cCCCCEEEEcCCCchhhHHHHHHcCCE
Confidence 455566667777777777754 3 23 45566666664444332 146789999888887777778889999
Q ss_pred EEEEcCCC----C--------CCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEcc
Q 001989 704 IVSVGTDA----K--------GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGA 768 (985)
Q Consensus 704 vv~v~~d~----~--------g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a 768 (985)
++.+|+++ + +.+|+++|+++++ +++++|++++|+ ++|.+.+ ++++|+++|+++|+++++|++
T Consensus 139 ~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~ 215 (422)
T 3fvs_A 139 PVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT---SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEV 215 (422)
T ss_dssp EEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECT
T ss_pred EEEEecccccccccccccccCCCCCHHHHHhhcC---CCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEcc
Confidence 99999876 3 3689999999987 789999999995 6999862 599999999999999999999
Q ss_pred ccccc-cCC--CC----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCC
Q 001989 769 NMNAQ-VGL--TS----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGT 841 (985)
Q Consensus 769 ~~~~~-~~l--~~----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~ 841 (985)
|.... .+- .. +...+.++++.|++|+|+. .|.++|++++++++.+.+.... . ..+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~-~-----------~~~~~ 279 (422)
T 3fvs_A 216 YQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSA----TGWKVGWVLGPDHIMKHLRTVH-Q-----------NSVFH 279 (422)
T ss_dssp TTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTC----GGGCCEEEECCHHHHHHHHHHH-H-----------TTTCC
T ss_pred chhhccCCCCCCChhhcccccCcEEEEecchhccCC----ccceEEEEEeCHHHHHHHHHHH-h-----------hccCC
Confidence 84211 110 01 1123455888899999954 3678999998877655432100 0 00111
Q ss_pred CCCcchhhhHHHHHHHHHHHH------hcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccc
Q 001989 842 IAAAPWGSALILPISYTYIAM------MGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKN 914 (985)
Q Consensus 842 i~s~~~g~~~~~~~a~a~l~~------lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~ 914 (985)
. +.....++.+++.. ...+.+.+..++..++++++.+.|++ ++.+.. +.+..+ +.++++....
T Consensus 280 ~------~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~--~~~~~~~~~~ 349 (422)
T 3fvs_A 280 C------PTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPII--PQGSYF--LITDISDFKR 349 (422)
T ss_dssp C------CHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEB--CSBSSE--EEEECHHHHH
T ss_pred C------CcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCCeecC--CCeeeE--EEEechhhcc
Confidence 1 11222223333432 12345666777788889999999987 444322 222222 3344431000
Q ss_pred cC----C---CC-HHHHHHHHH-HCCCccCC-CCC-------CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 915 TA----G---IE-PEDVAKRLM-DYGFHGPT-MSW-------PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 915 ~~----g---~~-~~~v~~~L~-~~Gi~~~~-~~~-------p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.. + .. ..++++.|. ++||.+.. ..+ ...+.+||+++. ++++|++ +++.|++++++
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~--~~e~i~~--~l~~l~~~l~~ 421 (422)
T 3fvs_A 350 KMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK--DEATLQA--MDEKLRKWKVE 421 (422)
T ss_dssp HCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC--CHHHHHH--HHHHHHHHHHC
T ss_pred cccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecC--CHHHHHH--HHHHHHHHHhh
Confidence 00 0 00 457788755 46998643 111 125899999876 9999999 77888887764
No 165
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.79 E-value=3.4e-19 Score=208.41 Aligned_cols=286 Identities=12% Similarity=0.055 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC--CC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT--DA 711 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~--d~ 711 (985)
+.++++++++ +|.+...++.++|++|+.++++++. +++++|++++..|.++...+...|++++.++. ++
T Consensus 59 ~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~--------~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~ 129 (446)
T 2x3l_A 59 ILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFS--------QKKGDILMARNVHKSVLHALDISQQEGHFIETHQSP 129 (446)
T ss_dssp HHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTT--------TSSSCEEECTTCCHHHHHHHHHHTCCEEECEEEECT
T ss_pred HHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhc--------CCCCEEEEecCccHHHHHHHHHcCCeEEEEeCeecc
Confidence 5688999999 9987444556666677755554431 36789999999898888778889999999988 65
Q ss_pred C----CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC----CCCccC
Q 001989 712 K----GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT----SPGYIG 783 (985)
Q Consensus 712 ~----g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~----~pg~~g 783 (985)
+ +.+|+++| ++ +++++|++++||++|.+. |+++|+++|+++|+++++|++|.. ...+. ....++
T Consensus 130 ~~~~~~~~d~~~l---~~---~~~~~v~~~~~n~~G~~~-~l~~I~~l~~~~~~~livDea~~~-~~~f~~~~~~~~~~g 201 (446)
T 2x3l_A 130 LTNHYNKVNLSRL---NN---DGHKLVVLTYPNYYGETF-NVEEVIKSLHQLNIPVLIDEAHGA-HFGLQGFPDSTLNYQ 201 (446)
T ss_dssp TTSSEEEEEC-------------CCEEEEESSCTTSCCC-CHHHHHHHHHHTTCCEEEECTTCT-TTTSTTSCCCGGGGT
T ss_pred ccCcCCCCCHHHH---cC---CCceEEEEECCCCCeEec-CHHHHHHHHHhcCCeEEEcchhhh-hhccCCCCCChHHcC
Confidence 4 56888887 44 678999999998999998 899999999999999999999853 22121 223457
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM 863 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l 863 (985)
+|+++.|+||+++ |+.|+|++++++++.+..+-...+.. .. ++. . + +....++. +.+..+
T Consensus 202 ~Di~~~S~~K~l~-----~~~g~g~l~~~~~~i~~~~~~~~~~~-------~~--~~s-~-~-~~~~aal~---~a~~~l 261 (446)
T 2x3l_A 202 ADYVVQSFHKTLP-----ALTMGSVLYIHKNAPYRENIIEYLSY-------FQ--TSS-P-S-YLIMASLE---SAAQFY 261 (446)
T ss_dssp CSEEEECHHHHSS-----SCTTCEEEEEETTCTTHHHHHHHHHH-------HS--CSS-C-C-HHHHHHHH---HHHHHH
T ss_pred CCEEEECCccccc-----cccccEEEEEcCCcCCHHHHHHHHHH-------Hc--CCC-c-h-HHHHHHHH---HHHHHH
Confidence 9999999999874 33478999998775441000000000 00 001 1 1 11111222 223333
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCC
Q 001989 864 GSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPG 943 (985)
Q Consensus 864 g~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~ 943 (985)
...|..+..++..+++++++++ ++.+... .++.. +.+.++ +.+..++.+.|.++||.+.... .+
T Consensus 262 ~~~g~~~~~~~~~~l~~~l~~~---g~~~~~~--~~~~~--l~i~~~------~~~~~~l~~~L~~~GI~v~~~g---~~ 325 (446)
T 2x3l_A 262 KTYDSTLFFAKRAQLIECLENK---GFEMLQV--DDPLK--LLIKYE------GFTGHDIQNWFMNAHIYLELAD---DY 325 (446)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHH---TCEEEEC--SSTTE--EEEECT------TSCHHHHHHHHHHTTEEESEEC---SS
T ss_pred HHhCHHHHHHHHHHHHHHHHHc---CCEECcC--CCCeE--EEEEeC------CcCHHHHHHHHHHCCCEEEecC---CC
Confidence 3333333455666777777766 4554321 12222 445553 4678899999999999874221 36
Q ss_pred EEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 944 TLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 944 ~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+|++++..+|++|+ + +++.|+++++.+.
T Consensus 326 ~iRi~~~~~~t~e~i-~--l~~aL~~~~~~~~ 354 (446)
T 2x3l_A 326 QALAILPLWHHDDTY-L--FDSLLRKIEDMIL 354 (446)
T ss_dssp CEEEECCCCCTTCCC-C--HHHHHHHHHTCCC
T ss_pred EEEEEeecCCCHHHH-H--HHHHHHHHHHhhc
Confidence 899999999999999 9 7788888876653
No 166
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.79 E-value=1.6e-18 Score=199.92 Aligned_cols=299 Identities=11% Similarity=0.032 Sum_probs=196.3
Q ss_pred hhHHHHHHHHHHHHHHHhCCC----ccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD----SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~----~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+.+.+++.+.+|.+ ...++.++|++++..++.++. .++++|+++.+.|..+...++..|++
T Consensus 85 ~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~--------~~gd~Vl~~~p~y~~~~~~~~~~g~~ 156 (404)
T 2o1b_A 85 HGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVI--------NPGDYVLLPDPGYTDYLAGVLLADGK 156 (404)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCSSHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhc--------CCCCEEEEcCCCchhHHHHHHHCCCE
Confidence 344455555555555556975 223555666666654444331 36789999888787777778889999
Q ss_pred EEEEcCCCC-CCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEccccccc-cC-CC
Q 001989 704 IVSVGTDAK-GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VG-LT 777 (985)
Q Consensus 704 vv~v~~d~~-g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~-l~ 777 (985)
++.+|.+++ ..+|+++|+++++ +++++|++++|+ ++|.+.+ ++++|.++|+++|+++++|+++.... .+ ..
T Consensus 157 ~~~v~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~ 233 (404)
T 2o1b_A 157 PVPLNLEPPHYLPDWSKVDSQII---DKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNP 233 (404)
T ss_dssp EEEEECCTTTCCCCGGGSCHHHH---HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCC
T ss_pred EEEeccCcccCcCCHHHHHHhhc---cCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCC
Confidence 999998764 4689999999997 689999999885 6898862 48899999999999999999985321 11 00
Q ss_pred CCCc----cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 778 SPGY----IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 778 ~pg~----~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
.... .+.|+++.|+||+|+.| |.++|++++++++.+.+...... .+.+. +....
T Consensus 234 ~~~~~~~~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~l~~~~~~------------~~~~~------~~~~~ 291 (404)
T 2o1b_A 234 SILASENGKDVAIEIYSLSKGYNMS----GFRVGFAVGNKDMIQALKKYQTH------------TNAGM------FGALQ 291 (404)
T ss_dssp CGGGSTTHHHHEEEEEESTTTTTCG----GGCCEEEEECHHHHHHHHHHHHH------------HCCCC------CHHHH
T ss_pred ChhhcCCCCCCEEEEEecchhccCc----hhheEeEecCHHHHHHHHHHHhh------------ccCCC------CHHHH
Confidence 1111 24578899999998543 56789999987766544211000 00111 11222
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCC
Q 001989 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYG 931 (985)
Q Consensus 854 ~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~G 931 (985)
.++.++|.. +.+.+++..++..++++++.+.|++ ++.+. .+.+..+ +.+.++ .+.+..++.++|. ++|
T Consensus 292 ~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~g~~--~~~~~~-----~~~~~~~l~~~l~~~~g 361 (404)
T 2o1b_A 292 DAAIYALNH-YDDFLEEQSNVFKTRRDRFEAMLAKADLPFV--HAKGGIY--VWLETP-----PGYDSEQFEQFLVQEKS 361 (404)
T ss_dssp HHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHTTCCEE--CCCBSSE--EEEECC-----TTCCHHHHHHHHHHHHC
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhcCCeec--CCCcceE--EEEeCC-----CCCCHHHHHHHHHHHCC
Confidence 223344443 3556677777788889999999987 45442 2222222 345554 2456788999987 579
Q ss_pred CccCCC-CCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 932 FHGPTM-SWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 932 i~~~~~-~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
|.+... .+. ..+++||+++. ++++|++ +++.|++++++
T Consensus 362 i~v~~g~~f~~~~~~~iRis~~~--~~e~l~~--~l~~l~~~l~~ 402 (404)
T 2o1b_A 362 ILVAPGKPFGENGNRYVRISLAL--DDQKLDE--AAIRLTELAYL 402 (404)
T ss_dssp EECEESGGGCGGGTTEEEEECCS--CTTHHHH--HHHHHHGGGGG
T ss_pred EEEeCchhhCcCCCCeEEEEEcC--CHHHHHH--HHHHHHHHHHh
Confidence 987542 222 24799999986 7889999 66777776654
No 167
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.79 E-value=3.1e-18 Score=194.88 Aligned_cols=295 Identities=13% Similarity=0.094 Sum_probs=194.5
Q ss_pred HHHHHHHHHHh-CCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-
Q 001989 635 NNLGEWLCTIT-GFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA- 711 (985)
Q Consensus 635 ~e~~~~la~l~-G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~- 711 (985)
.++++.+++++ +.+... +++++|++|+..++.++. .++|+|+++.+.|..+...++..|++++.+|+++
T Consensus 66 ~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 137 (375)
T 3op7_A 66 PAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI--------EPGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEE 137 (375)
T ss_dssp HHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESSCTHHHHHHHHTTCEEEEEEEEGG
T ss_pred HHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc--------CCCCEEEEeCCCchhHHHHHHHcCCEEEEEecccc
Confidence 36778888877 355443 555667777755544331 4788999988888777777888999999999864
Q ss_pred -CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEcccccccc-CCCCC-CccCC
Q 001989 712 -KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQV-GLTSP-GYIGA 784 (985)
Q Consensus 712 -~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~-~l~~p-g~~g~ 784 (985)
++.+|+++|+++++ +++++|++++| |++|.+. | +++|.++|+++|+++++|+++..... ++... ..++.
T Consensus 138 ~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 213 (375)
T 3op7_A 138 NGWLPDLEKLRQLIR---PTTKMICINNANNPTGAVM-DRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDK 213 (375)
T ss_dssp GTTEECHHHHHHHCC---TTCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTT
T ss_pred CCCCCCHHHHHHhhc---cCCeEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCC
Confidence 34589999999997 78999999998 5799987 7 99999999999999999999742111 11000 12345
Q ss_pred cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
++++.|++|+|+.| |.++|++++++++.+.+..... ....+. +.....++.+.+.. .
T Consensus 214 ~i~~~s~sK~~~~~----G~r~G~v~~~~~l~~~~~~~~~--------------~~~~~~----~~~~~~~~~~~l~~-~ 270 (375)
T 3op7_A 214 GIAVNSLSKTYSLP----GIRIGWVAANHQVTDILRDYRD--------------YTMICA----GVFDDLVAQLALAH-Y 270 (375)
T ss_dssp EEEEEESSSSSSCG----GGCCEEEECCHHHHHHHTTTGG--------------GTTSCC----CHHHHHHHHHHHHT-H
T ss_pred EEEEeEChhhcCCc----ccceEEEEeCHHHHHHHHHHHh--------------hhccCC----CcHHHHHHHHHHhc-c
Confidence 68888999998543 5678999988777655432110 001111 11222223333432 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH-HHCCCccCCC-CCCCC
Q 001989 865 SKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL-MDYGFHGPTM-SWPVP 942 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L-~~~Gi~~~~~-~~p~~ 942 (985)
.+.+++..++..++++++.+.|++...+....+.+..+ +.+.++ .+.+..+++++| .++||.+... .+..+
T Consensus 271 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~ll~~~gi~v~~g~~~~~~ 343 (375)
T 3op7_A 271 QEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVST--SFVKIA-----VDMPMEDFCLQLLQEHGVLLVPGNRFERD 343 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSC--EEEEEC-----CSSCHHHHHHHHHHHHCEECEEGGGGTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEE--EeEEcC-----CCCCHHHHHHHHHHhCCEEEeChhhhCCC
Confidence 23445555566788888988887632332222222222 234443 245678888888 5789987532 23335
Q ss_pred CEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 943 GTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 943 ~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+.+|++++. +.++|++ +++.|++++++++
T Consensus 344 ~~iRi~~~~--~~~~i~~--~l~~l~~~l~~~~ 372 (375)
T 3op7_A 344 GYVRLGFAC--EQETLIK--GLEKLSQFLRRFD 372 (375)
T ss_dssp TEEEECCCS--CHHHHHH--HHHHHHHHHGGGC
T ss_pred CeEEEEecC--CHHHHHH--HHHHHHHHHHHHh
Confidence 899999865 4489999 8888988887664
No 168
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.78 E-value=3.6e-18 Score=195.72 Aligned_cols=294 Identities=11% Similarity=0.036 Sum_probs=192.1
Q ss_pred hhHHHHHHHHHHHHHHHhCCC---cc-c-eecCcHHHHHHHHHHHHHHHHHhcCCCCC-----CEEEEcCCCCcccHHHH
Q 001989 628 QGYQEMFNNLGEWLCTITGFD---SF-S-LQPNAGAAGEYAGLMVIRAYHKARGDHHR-----NVCIIPVSAHGTNPATA 697 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~---~~-~-~~~~sGa~a~~a~l~air~~~~~~g~~~~-----~~IIv~~~~Hg~~~~~a 697 (985)
.|..++.+++.+++.+.+|.+ .. . ++.++|++++..++.++. .++ ++|+++.+.|..+...+
T Consensus 66 ~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~--------~~g~~~~~d~vl~~~p~~~~~~~~~ 137 (396)
T 3jtx_A 66 AGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVL--------NPVSDGIKPAIVSPNPFYQIYEGAT 137 (396)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHC--------CC---CCCCEEEEEESCCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHh--------CCCCccCCCEEEEcCCCcHhHHHHH
Confidence 455677777888888888853 44 4 445566666654444332 233 78999888776666677
Q ss_pred HHCCcEEEEEcCCCC-CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc
Q 001989 698 AMCGMKIVSVGTDAK-GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 698 ~~~G~~vv~v~~d~~-g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~ 773 (985)
+..|++++.+|++++ ..+|+++|+++++ +++++|++++| |++|.+. .++++|+++|+++|+++++|+++....
T Consensus 138 ~~~g~~~~~v~~~~~g~~~d~~~l~~~~~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~ 214 (396)
T 3jtx_A 138 LLGGGEIHFANCPAPSFNPDWRSISEEVW---KRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIY 214 (396)
T ss_dssp HHTTCEEEEEECCTTTCCCCGGGSCHHHH---HTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCC
T ss_pred HHcCCEEEEeecCCCCCccCHHHHHHhhc---cCcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 889999999998654 4689999999998 68999999999 4699986 135569999999999999999985211
Q ss_pred -cCCCCC-C----------ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCC
Q 001989 774 -VGLTSP-G----------YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGT 841 (985)
Q Consensus 774 -~~l~~p-g----------~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~ 841 (985)
.+ ..+ . ..+.++++.|++|+|+. .|.++|+++.++++.+.+..... ..+.+
T Consensus 215 ~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~~------------~~~~~ 277 (396)
T 3jtx_A 215 FDG-NKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNV----PGLRSGFVAGDAELLKNFLLYRT------------YHGSA 277 (396)
T ss_dssp STT-CCCCCHHHHHHHTTCCCTTEEEEEESTTTSSC----GGGCCEEEEECHHHHHHHHHHHH------------HHTCC
T ss_pred cCC-CCCchHHhhhhhcccccCcEEEEeccccccCC----cccceEEEEeCHHHHHHHHHHHh------------hcccC
Confidence 11 011 1 25677889999998754 36678999988776654421100 00011
Q ss_pred CCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHH
Q 001989 842 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPE 921 (985)
Q Consensus 842 i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~ 921 (985)
. +.....++.+.+.. .+.+.+..++..++.+++.+.|++.+.+. .+.+..+ +.++++ +.+..
T Consensus 278 ~------~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~--~~~~~~------~~~~~ 339 (396)
T 3jtx_A 278 M------SIPVQRASIAAWDD--EQHVIDNRRLYQEKFERVIPILQQVFDVK--LPDASFY--IWLKVP------DGDDL 339 (396)
T ss_dssp C------CHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHTTTSCCC--CCSSSSE--EEEECT------TSCHH
T ss_pred C------CHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHhcCCcc--CCCeeEE--EEEECC------CCCHH
Confidence 1 11122222233332 34566666777888888999987643332 2222222 345654 24678
Q ss_pred HHHHHHH-HCCCccCCCC-C--------CCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 922 DVAKRLM-DYGFHGPTMS-W--------PVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 922 ~v~~~L~-~~Gi~~~~~~-~--------p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+++++|. ++||.+.... + +..+.+||+++. +++||++ +++.|++++
T Consensus 340 ~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~--~~~~i~~--~l~~l~~~l 395 (396)
T 3jtx_A 340 AFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA--DVATCVK--AAEDIVSLY 395 (396)
T ss_dssp HHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS--CHHHHHH--HHHHHHHHC
T ss_pred HHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC--CHHHHHH--HHHHHHHHh
Confidence 8999985 4699874311 1 124899999876 9999999 667776653
No 169
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.4e-18 Score=203.25 Aligned_cols=301 Identities=13% Similarity=0.110 Sum_probs=194.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCC--ccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFD--SFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~--~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+++.+++.+.+|.+ ... ++.++|++|+..++.++. .++++||++++.|..+...++..|+++
T Consensus 95 ~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 166 (447)
T 3b46_A 95 RGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLL--------NAGDEVIVFEPFFDQYIPNIELCGGKV 166 (447)
T ss_dssp TCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHc--------CCCCEEEEeCCCchhHHHHHHHcCCEE
Confidence 455555666666666656653 233 445666666655544331 467899998888888877888899999
Q ss_pred EEEcCCC------------CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccc
Q 001989 705 VSVGTDA------------KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGAN 769 (985)
Q Consensus 705 v~v~~d~------------~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~ 769 (985)
+.+|.++ ++.+|+++|+++++ +++++|++++| |++|.+. .++++|+++|+++|+++++|+++
T Consensus 167 ~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~ 243 (447)
T 3b46_A 167 VYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT---SKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVY 243 (447)
T ss_dssp EEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred EEEeCCCccccccccccccCcccCHHHHHHhhc---cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccc
Confidence 9998754 35799999999997 78999999998 5699883 26999999999999999999998
Q ss_pred ccc-ccC-CCC-----CCccCCcEEEeCCcccccccCCCCCCceEEEEE-cccccCcCCCCccccCCCCCCCCCCCCCCC
Q 001989 770 MNA-QVG-LTS-----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVSTGGIPAPEKSQPLGT 841 (985)
Q Consensus 770 ~~~-~~~-l~~-----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~-~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~ 841 (985)
... ..+ ... ++.++.|+++.|+||+|++ .|.++|++++ ++++.+.+...... .+.+
T Consensus 244 ~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~----~G~riG~~~~~~~~l~~~l~~~~~~------------~~~~ 307 (447)
T 3b46_A 244 EHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAA----TGWRIGWVLSLNAELLSYAAKAHTR------------ICFA 307 (447)
T ss_dssp TTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTC----TTSCCEEEECSCHHHHHHHHHHHHH------------HTSS
T ss_pred hhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCC----cchhhEEEEeCCHHHHHHHHHHHhh------------ccCC
Confidence 521 111 001 1234689999999999864 3567999999 77665443210000 0011
Q ss_pred CCCcchhhhHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccC---
Q 001989 842 IAAAPWGSALILPISYTYIAMMG-SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTA--- 916 (985)
Q Consensus 842 i~s~~~g~~~~~~~a~a~l~~lg-~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~--- 916 (985)
.+ .....++.++|.... .+.+.+..++..++++++.+.|++ ++.+. .+.+..+ +.++++....+.
T Consensus 308 ~~------~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~g~~--~~~~~~~~~~p~~~~ 377 (447)
T 3b46_A 308 SP------SPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDELGLPYT--APEGTYF--VLVDFSKVKIPEDYP 377 (447)
T ss_dssp CC------HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTCCEE--CCSBSSE--EEEECTTCCCCTTCC
T ss_pred CC------hHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeec--CCCeeEE--EEEecccccCccccc
Confidence 11 111222334444332 234566667788889999999987 55543 2222222 345554210000
Q ss_pred -------CCCHHHHHHHHH-HCCCccCCC-CCC-------CCCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 917 -------GIEPEDVAKRLM-DYGFHGPTM-SWP-------VPGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 917 -------g~~~~~v~~~L~-~~Gi~~~~~-~~p-------~~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
+.+..+++++|. ++||.+... .|. ..+++||++.. ++++|++ .++.|++
T Consensus 378 ~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~--~~e~l~~--~~~~l~~ 442 (447)
T 3b46_A 378 YPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCK--DDAYLEN--AVERLKL 442 (447)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCS--CHHHHHH--HHHHGGG
T ss_pred cccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeC--CHHHHHH--HHHHHHH
Confidence 124568998886 579987532 221 15799999974 8999999 6566654
No 170
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.78 E-value=5.4e-18 Score=195.96 Aligned_cols=294 Identities=15% Similarity=0.150 Sum_probs=184.9
Q ss_pred HHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCccc---HHHHHHCCc--EEEEEcCCC
Q 001989 637 LGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN---PATAAMCGM--KIVSVGTDA 711 (985)
Q Consensus 637 ~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~---~~~a~~~G~--~vv~v~~d~ 711 (985)
.++++++++|.+...+.+++|++|++.++.++. .++++|++++..|+.+ .......|. +++.++.++
T Consensus 83 a~~~~~~~~~~~~~~v~~~~Gs~a~~~al~~~~--------~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 154 (425)
T 3ecd_A 83 AIERVKRLFNAGHANVQPHSGAQANGAVMLALA--------KPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSR 154 (425)
T ss_dssp HHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------CTTCEEEEECC------------------CEEEEECCCT
T ss_pred HHHHHHHHhCCCCceeecCchHHHHHHHHHHcc--------CCCCEEEEcccccccceecchhhhhcccceeeeecCCCc
Confidence 347889999998866667889887765554431 4788999988877652 222223444 666677663
Q ss_pred -CCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-CCCc-cCCcEEE
Q 001989 712 -KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-SPGY-IGADVCH 788 (985)
Q Consensus 712 -~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-~pg~-~g~Di~~ 788 (985)
++.+|+++|++++++ +++++|++++|++ |... ++++|.++|+++|+++|+|++|..+...-. .+.. ..+|+++
T Consensus 155 ~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~-~~~~-~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~ 230 (425)
T 3ecd_A 155 DTMLIDYDQVEALAQQ--HKPSLIIAGFSAY-PRKL-DFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVT 230 (425)
T ss_dssp TTSSCCHHHHHHHHHH--HCCSEEEEECSCC-CSCC-CHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEE
T ss_pred ccCccCHHHHHHHHhh--cCCcEEEEccccC-CCcC-CHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhcCcEEE
Confidence 478999999999973 4678899987765 7676 899999999999999999999753332111 1111 1379999
Q ss_pred eCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.|+||+| +||.+|++++++ .+.+.+....... ..++.. ....+ ++.+.+.....++
T Consensus 231 ~s~sK~l------~g~~~g~~~~~~~~~~~~~~~~~~~~-----------~~~~~~-----~~~~~-a~~~a~~~~~~~~ 287 (425)
T 3ecd_A 231 STTHKTL------RGPRGGFVLTNDEEIAKKINSAVFPG-----------LQGGPL-----MHVIA-GKAVAFGEALTDD 287 (425)
T ss_dssp EESSGGG------CCCSCEEEEESCHHHHHHHHHHHC----------------CCC-----HHHHH-HHHHHHHHHTSHH
T ss_pred ecCCccc------CCCCcEEEEeCCHHHHHHHHhhhCcc-----------ccCCcc-----HHHHH-HHHHHHHHHHHHh
Confidence 9999998 357779999884 4443322110000 000100 11111 1223333334456
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC------
Q 001989 868 LTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP------ 940 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p------ 940 (985)
+.+..++..++++++.+.|++ ++.+..++. . .+.+.+.++. .+.+...+.+.|.++||.+.....|
T Consensus 288 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~--~~~~~~~~~~----~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~ 360 (425)
T 3ecd_A 288 FKTYIDRVLANAQALGDVLKAGGVDLVTGGT-D--NHLLLVDLRP----KGLKGAQVEQALERAGITCNKNGIPFDPEKP 360 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC-S--SSEEEEECGG----GTCCHHHHHHHHHHTTEECEECCCTTCSSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeccCCC-C--ceEEEEEeCC----CCCCHHHHHHHHHHcCCEecccccCCCCCCC
Confidence 777788888999999999987 555432111 1 2234455431 2457888999999999987532212
Q ss_pred -CCCEEEEeccC----CCCHHHHHHHHccCChhHHHHhh
Q 001989 941 -VPGTLMIEPTE----SESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 941 -~~~~lris~t~----~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
..+.+|++++. ..+++||++ +++.|+++++..
T Consensus 361 ~~~~~iRi~~~~~~~~~~~~e~i~~--~~~~l~~~l~~~ 397 (425)
T 3ecd_A 361 TITSGIRLGTPAGTTRGFGAAEFRE--VGRLILEVFEAL 397 (425)
T ss_dssp TTCSEEEEESHHHHHTTCCHHHHHH--HHHHHHHHHHHH
T ss_pred CCccceeccchhheeccCCHHHHHH--HHHHHHHHHhcc
Confidence 23689999554 455999999 778888888765
No 171
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.78 E-value=5.3e-18 Score=191.70 Aligned_cols=282 Identities=11% Similarity=0.063 Sum_probs=189.7
Q ss_pred HHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++++++++|.+... +++++|++++..+ ++. - ++|+++.+.|..+...++..|++++.+|.++++
T Consensus 64 ~~l~~~la~~~~~~~~~i~~~~g~t~al~~~---~~~--------~-d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 131 (361)
T 3ftb_A 64 RRLNKSIENYLKLKDIGIVLGNGASEIIELS---ISL--------F-EKILIIVPSYAEYEINAKKHGVSVVFSYLDENM 131 (361)
T ss_dssp HHHHHHHHHHHTCCSCEEEEESSHHHHHHHH---HTT--------C-SEEEEEESCCTHHHHHHHHTTCEEEEEECCTTS
T ss_pred HHHHHHHHHHhCCCcceEEEcCCHHHHHHHH---HHH--------c-CcEEEecCChHHHHHHHHHcCCeEEEeecCccc
Confidence 47889999999987644 4456666655333 321 1 789998887777777788899999999998888
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccccC-----CCCCCccCCc
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQVG-----LTSPGYIGAD 785 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~~~-----l~~pg~~g~D 785 (985)
.+|+++|+++++ + +++|++++| |++|.+.+ ++++|+++|+++|+++++|+++...... ....+..+.+
T Consensus 132 ~~~~~~l~~~l~---~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 207 (361)
T 3ftb_A 132 CIDYEDIISKID---D-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCL 207 (361)
T ss_dssp CCCHHHHHHHTT---T-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSE
T ss_pred CCCHHHHHHhcc---C-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCE
Confidence 899999999997 5 889999999 56998862 4788888889999999999998421110 1111223345
Q ss_pred EEEeCCcccccccCCCCCCceEEEE-EcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIG-VKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~-~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg 864 (985)
+++.|++|+|+. +|.++|+++ .++++.+.+.... .+.+. +.....++.+++. .
T Consensus 208 i~~~s~sK~~~~----~G~r~g~~~~~~~~~~~~~~~~~--------------~~~~~------~~~~~~~~~~~l~--~ 261 (361)
T 3ftb_A 208 FIIRAMTKFFAM----PGIRFGYGITNNKEIAAKIKAKQ--------------NPWNI------NCFAEMAAINCLK--D 261 (361)
T ss_dssp EEEEESSSTTSC----GGGCCEEEEESCHHHHHHHHTTS--------------CTTCS------CHHHHHHHHHTSS--C
T ss_pred EEEeeChhhcCC----CCcceeEEEeCCHHHHHHHHhhC--------------CCCCC------CHHHHHHHHHHhc--C
Confidence 778899999854 356788888 5666655442210 01111 1122222333333 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCee-ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-CCC--
Q 001989 865 SKGLTEASKIAILNANYMAKRLEKHYPIL-FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-SWP-- 940 (985)
Q Consensus 865 ~eGl~~~~~~~~~~a~~l~~~L~~g~~l~-~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~p-- 940 (985)
.+.+.+..++..++++++.+.|++...+. ...+.+.+ +.+.++ +.+..++.+.|.++||.+... .++
T Consensus 262 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~---~~~~~~------~~~~~~l~~~l~~~gi~v~~g~~~~~~ 332 (361)
T 3ftb_A 262 TNYIEESLLWIKKERKRFIEELNKIGFIKRVFSPHANF---VLCRLE------NISGEKLYDSLLKEDIVIRRCCNFIGL 332 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCSSSE---EEEEES------SSCHHHHHHHHHTTTEECEECTTSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCCCCeE---EEEEcC------CCCHHHHHHHHHHCCeEEeeCccCCCC
Confidence 45667777778888999999998632332 22222322 345654 247889999999999987532 222
Q ss_pred CCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 941 VPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 941 ~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
..+.+|++++ +.+|+|+ +.+.|+++.+
T Consensus 333 ~~~~iRis~~---~~~~~~~--l~~~l~~~~~ 359 (361)
T 3ftb_A 333 DDSFVRFAIK---DEKKNTK--FLRALKGVEN 359 (361)
T ss_dssp CTTEEEEECC---CHHHHHH--HHHHHHHHHH
T ss_pred CCCEEEEEcC---CHHHHHH--HHHHHHHHHh
Confidence 2489999985 8999999 6667766654
No 172
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.78 E-value=2.6e-18 Score=196.79 Aligned_cols=308 Identities=15% Similarity=0.078 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
..++++.+++++|.+. .++.++|++|+..++.+++ ..++++|+++...|..+...++..|++++.+|++++
T Consensus 41 ~~~l~~~la~~~~~~~-~~~~~~gt~al~~~~~~~~-------~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 112 (393)
T 1mdo_A 41 NQELEAAFCRLTGNQY-AVAVSSATAGMHIALMALG-------IGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDT 112 (393)
T ss_dssp HHHHHHHHHHHHCCSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHhCCCc-EEEecChHHHHHHHHHHcC-------CCCCCEEEeCCCccHhHHHHHHHCCCEEEEEeccCCc
Confidence 4578899999999874 3556778877755544431 146789999998887777778889999999999865
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC-CcEEEeCC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG-ADVCHLNL 791 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g-~Di~~~s~ 791 (985)
+.+|+++|+++++ +++++|++++ ++|.+. |+++|.++|+++|+++++|++|..+.... ...++ .|++++|+
T Consensus 113 ~~~d~~~l~~~l~---~~~~~v~~~~--~~G~~~-~~~~i~~l~~~~~~~li~D~a~~~g~~~~--~~~~~~~d~~~~S~ 184 (393)
T 1mdo_A 113 LMVTPEHIEAAIT---PQTKAIIPVH--YAGAPA-DLDAIYALGERYGIPVIEDAAHATGTSYK--GRHIGARGTAIFSF 184 (393)
T ss_dssp CCBCHHHHHHHCC---TTEEEECCBC--GGGCCC-CHHHHHHHHHHHTCCBCEECTTCTTCEET--TEETTSSSEEEEEC
T ss_pred CCCCHHHHHHhcC---CCceEEEEeC--CCCCcC-CHHHHHHHHHHcCCeEEEECccccCCeEC--CeecCCCCeEEEeC
Confidence 6899999999997 6899998875 579887 89999999999999999999986432211 11245 89999999
Q ss_pred c--ccccccCCCCCCceEEEEEc-ccccCcCCC-CccccCCCC-CC------CCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 001989 792 H--KTFCIPHGGGGPGMGPIGVK-KHLAPFLPS-HPVVSTGGI-PA------PEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 792 h--K~l~~p~g~GGPg~G~i~~~-~~l~~~lp~-~~~g~~~~~-~~------~~~~~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
| |+++ |+.+|+++++ +++.+.+.. ...+...+. .+ +..+..+.+.. +......++.+...+
T Consensus 185 ~k~K~l~------~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~a~~~~~l 256 (393)
T 1mdo_A 185 HAIKNIT------CAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYK--YNLPDLNAAIALAQL 256 (393)
T ss_dssp CTTSSSC------SSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCB--CCCCHHHHHHHHHHH
T ss_pred CCCCccc------cccceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCcc--CCCCHHHHHHHHHHH
Confidence 9 7662 3467888886 454432210 000110000 00 00000000000 000112222222222
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCC--CCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC
Q 001989 861 AMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGV--NGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 861 ~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~--~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~ 937 (985)
+++++..++..++++++.+.|++ ++.+..... .....+.+.+.++. ...+.+..++.+.|.++||.+...
T Consensus 257 -----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~l~~~l~~~gi~v~~~ 329 (393)
T 1mdo_A 257 -----QKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDE--ARCGITRDALMASLKTKGIGTGLH 329 (393)
T ss_dssp -----HTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCH--HHHSSCHHHHHHHHHHTTBCCBCC
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCceeEEEEEEecc--cccccCHHHHHHHHHhCCCCcccc
Confidence 34566666777889999999987 333211110 00111124455430 000356889999999999987643
Q ss_pred CCC---------------C-------CCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 938 SWP---------------V-------PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 938 ~~p---------------~-------~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
..| . ...+|++++..+|++||++ ++++|+++++..
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~--~~~~l~~~~~~~ 386 (393)
T 1mdo_A 330 FRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDR--VITALHQIAGQG 386 (393)
T ss_dssp CCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHH--HHHHHHHHHC--
T ss_pred cCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHH--HHHHHHHHHhcC
Confidence 211 1 2479999999999999999 778888877654
No 173
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.78 E-value=3.1e-18 Score=196.03 Aligned_cols=305 Identities=14% Similarity=0.078 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
..++++.+++++|.+. .+++++|++|+..++.+++ ..++++||++...|..+...++..|++++.++++++
T Consensus 40 ~~~l~~~la~~~~~~~-~i~~~sGt~al~~~l~~l~-------~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 111 (388)
T 1b9h_A 40 VNSFEREFAAHHGAAH-ALAVTNGTHALELALQVMG-------VGPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAAT 111 (388)
T ss_dssp HHHHHHHHHHHTTCSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHhCCCe-EEEeCCHHHHHHHHHHHcC-------CCCcCEEEECCCccHHHHHHHHHcCCEEEEEecCCCc
Confidence 4578899999999874 4666778776654444331 146789999998888887778889999999999864
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CCCCccC-CcEEEeC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TSPGYIG-ADVCHLN 790 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~~pg~~g-~Di~~~s 790 (985)
+.+|+++|+++++ +++++|+.. |.+|.+. |+++|.++|+++|+++|+|++|..+...- ...+.++ +++.++|
T Consensus 112 ~~~d~~~l~~~i~---~~~~~v~~~--n~tG~~~-~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~~i~~~S~s 185 (388)
T 1b9h_A 112 YNLDPEAVAAAVT---PRTKVIMPV--HMAGLMA-DMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQ 185 (388)
T ss_dssp CCBCHHHHHHHCC---TTEEEECCB--CGGGCCC-CHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECC
T ss_pred CCCCHHHHHHhcC---cCceEEEEe--CCccCcC-CHHHHHHHHHHcCCEEEEecchhcCCccCCeecccccceEEEEcc
Confidence 8899999999997 788888732 4589998 89999999999999999999986433210 1223444 4555555
Q ss_pred CcccccccCCCCCCceEEEEEccc-c--cCcCCC-CccccCCCCCCCC-CCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 791 LHKTFCIPHGGGGPGMGPIGVKKH-L--APFLPS-HPVVSTGGIPAPE-KSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 791 ~hK~l~~p~g~GGPg~G~i~~~~~-l--~~~lp~-~~~g~~~~~~~~~-~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
.||++ +|+.+|+++++++ + .+.+.. ...+.......+. ...++ +... +...+ ++.+.. .
T Consensus 186 ~~K~l------~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~----~~~~~---a~~~~~--~ 249 (388)
T 1b9h_A 186 NGKLM------TAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGS-NMRL----NEFSA---SVLRAQ--L 249 (388)
T ss_dssp TTSSS------CSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCC-BCBC----BHHHH---HHHHHH--H
T ss_pred CCCcc------cCCCeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccc-cCCc----CHHHH---HHHHHH--H
Confidence 66776 3456788888865 4 332210 0011100000000 00011 1000 11111 112222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCeeecCC-C---CceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCC
Q 001989 866 KGLTEASKIAILNANYMAKRLEKHYPILFRGV-N---GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPV 941 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~-~---~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~ 941 (985)
+.+.+..++..++++++.+.|++..++...++ . ....+.+.+.++.. .+.+..++.+.|.++||.+.....|.
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~L~~~gI~v~~~~~~~ 326 (388)
T 1b9h_A 250 ARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGL---TEERRNALVDRLVEAGLPAFAAFRAI 326 (388)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTC---CHHHHHHHHHHHHHTTCCEEECCCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCc---CcccHHHHHHHHHHCCCCcccccCcc
Confidence 33455566677788999999986222322111 0 01122345665410 00146789999999999875432221
Q ss_pred ------------------------------CCEEEEeccCCC-CHHHHHHHHccCChhHHHHh
Q 001989 942 ------------------------------PGTLMIEPTESE-SKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 942 ------------------------------~~~lris~t~~~-t~eeId~~~~~~~l~~~~~~ 973 (985)
.+.||++++..+ |+||||+ +++.|++++++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~--~~~~l~~~~~~ 387 (388)
T 1b9h_A 327 YRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHA--TAEIIADAVAR 387 (388)
T ss_dssp GGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHH--HHHHHHHHHHH
T ss_pred ccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHH--HHHHHHHHHhh
Confidence 136999999999 9999999 78888887754
No 174
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.78 E-value=4.5e-17 Score=184.62 Aligned_cols=298 Identities=14% Similarity=0.122 Sum_probs=207.2
Q ss_pred CCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhh
Q 001989 172 GMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ 251 (985)
Q Consensus 172 G~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~ 251 (985)
+.|..+...|+.+.+++...-.-+..|.+. ++ .++++.+|+++|.++.++.+++|+|.++++++.++ .
T Consensus 36 ~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~-----~~-----~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l-~- 103 (365)
T 3get_A 36 ASNENPFGTPPKAIECLRQNANKAHLYPDD-----SM-----IELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSK-L- 103 (365)
T ss_dssp SSCCCTTCSCHHHHHHHHHHGGGTTSCCCT-----TC-----HHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH-C-
T ss_pred cCCCCCCCCCHHHHHHHHHHHHhhccCCCC-----Ch-----HHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHH-h-
Confidence 445445556777665555432223333221 11 26789999999998889999999998888777654 2
Q ss_pred cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHH
Q 001989 252 KGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKN 321 (985)
Q Consensus 252 ~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~ 321 (985)
++||+|+++...|+++...++. .|.+++.++. +++++ +++++++|++++| |.+|.+.|++++.++
T Consensus 104 -~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l 178 (365)
T 3get_A 104 -NSKNAFLQAGVTFAMYEIYAKQ----CGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCLPNNPLGECLDASEATEF 178 (365)
T ss_dssp -CTTCEEEECSSCCTHHHHHHHH----HTCEEEECSSSSCCHHHHHHHHHHTTTTEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred -CCCCEEEEeCCChHHHHHHHHH----cCCEEEEEecCCCCCCCHHHHHHHhCCCCCEEEEcCCCCCCCCCcCHHHHHHH
Confidence 3889999999999998888754 4888888875 45666 7889999999988 679999999999998
Q ss_pred HH--hCCcEEEEEecCccccC---C----CCC----CcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCce
Q 001989 322 AH--ANGVKVVMATDLLALTI---L----KPP----GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRI 387 (985)
Q Consensus 322 a~--~~galliV~a~~~~lg~---l----~~~----~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~ 387 (985)
++ ++|+++++|. .++... . .++ ...+.+++++|. |.|+. .|..+|++++++++.+.+...
T Consensus 179 ~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~~~- 252 (365)
T 3get_A 179 IKGVNEDCLVVIDA-AYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGL----GGLRIGYGIANANIISAFYKL- 252 (365)
T ss_dssp HHTSCTTSEEEEEC-TTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSC----TTTCCEEEEECHHHHHHHHHH-
T ss_pred HHhCCCCcEEEEeC-ccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcC----cchheEEEEcCHHHHHHHHHh-
Confidence 88 6699999953 333111 1 111 234678999987 87753 344579999988877655100
Q ss_pred eeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCe
Q 001989 388 VGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 388 vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~ 467 (985)
+...+.| .....++.++ +-..+.++++.++..++.+++.+.|+++| +
T Consensus 253 -------------------------~~~~~~~---~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~ 299 (365)
T 3get_A 253 -------------------------RAPFNVS---NLALKAAVAA----MDDDEFTEKTLENNFSQMELYKEFAKKHN-I 299 (365)
T ss_dssp -------------------------SCTTCSC---HHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHHHHHHTT-C
T ss_pred -------------------------cCCCCcC---HHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHHHhCC-C
Confidence 0000111 1112222222 22346788899999999999999999996 8
Q ss_pred EEcCCCCcceEEEecCC--HHHHHHHHHHcCceeeeec---CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 468 EVQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVVD---SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 468 ~~~~~~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~~---~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++.... ..-+.+.+++ ..++.+.|.++||.+.... ++.+|++++ |++|+|+++++|.+
T Consensus 300 ~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~---~~~~i~~l~~~l~~ 362 (365)
T 3get_A 300 KIIDSY-TNFITYFFDEKNSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG---TSYENEKFFTEFDK 362 (365)
T ss_dssp EECCCS-SSEEEEECSSSCHHHHHHHHHTTTEECEECGGGTCSEEEEECC---CHHHHHHHHHHHHH
T ss_pred EECCCC-CeEEEEECCCCCHHHHHHHHHHCCEEEEECccCCCCEEEEEcC---CHHHHHHHHHHHHH
Confidence 876321 2224566653 8899999999999886543 588999987 89999999999863
No 175
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.78 E-value=1.2e-18 Score=200.26 Aligned_cols=296 Identities=11% Similarity=0.072 Sum_probs=191.6
Q ss_pred HHHHHHHHHHhCCCccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++.+++++|.+...+ +.++|++++..++.++. .++++|+++.+.|..+...++..|++++.+|.++++
T Consensus 77 ~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~--------~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 148 (397)
T 2zyj_A 77 APLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFL--------DEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEG 148 (397)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTE
T ss_pred HHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhC--------CCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCCC
Confidence 367788888888765544 44555556544443321 367899998877766666677889999999987665
Q ss_pred CCCHHHHHHHHHhcCCCEEEEE-EEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cCC--CCCCccCC--
Q 001989 714 NINIEELRKAAEANRDNLSTLM-VTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VGL--TSPGYIGA-- 784 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vv-v~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~l--~~pg~~g~-- 784 (985)
+|+++|++++++ .++++|+ +++| |++|.+.+ ++++|+++|+++|+++++|+++.... .+- .....++.
T Consensus 149 -~d~~~l~~~l~~--~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~ 225 (397)
T 2zyj_A 149 -PDLDALEEVLKR--ERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREA 225 (397)
T ss_dssp -ECHHHHHHHHHH--CCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHH
T ss_pred -CCHHHHHHHHhh--cCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCccc
Confidence 899999999983 2677774 5777 56898861 35599999999999999999985321 111 11112222
Q ss_pred ----cEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 001989 785 ----DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 785 ----Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
.+++.|+||+|+ | |.++|++++++++.+.+....... ..+++ .....++.++|
T Consensus 226 ~~~~~i~~~s~sK~~~-~----G~r~G~~~~~~~~~~~l~~~~~~~--------------~~~~~----~~~~~a~~~~l 282 (397)
T 2zyj_A 226 GYPGVIYLGSFSKVLS-P----GLRVAFAVAHPEALQKLVQAKQGA--------------DLHTP----MLNQMLVHELL 282 (397)
T ss_dssp TCCCEEEEEESTTTTC-G----GGCCEEEECCHHHHHHHHHHHHHH--------------HSSCC----HHHHHHHHHHH
T ss_pred CCCeEEEEeccccccc-c----cceeEEEecCHHHHHHHHHHHHhh--------------cCCCC----HHHHHHHHHHH
Confidence 378899999985 3 567899999877655442110000 00111 12222223334
Q ss_pred HHhcH-HHHHHHHHHHHHHHHHHHHHhhcc-C-CeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC
Q 001989 861 AMMGS-KGLTEASKIAILNANYMAKRLEKH-Y-PILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 861 ~~lg~-eGl~~~~~~~~~~a~~l~~~L~~g-~-~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~ 937 (985)
.. +. +.+++..++..++++++.+.|++. . .+....+.+..+ +.++++ .+.+..++.++|.++||.+...
T Consensus 283 ~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g~~--~~~~~~-----~~~~~~~~~~~l~~~gi~v~~g 354 (397)
T 2zyj_A 283 KE-GFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMF--VWMELP-----KGLSAEGLFRRALEENVAFVPG 354 (397)
T ss_dssp TT-THHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSSE--EEEECS-----TTCCHHHHHHHHHHTTEEEEES
T ss_pred Hh-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCccEE--EEEEcC-----CCCCHHHHHHHHHHCCCEEech
Confidence 32 21 345666667778888999988762 2 232222222222 345654 2457889999999999987532
Q ss_pred -CCC----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 938 -SWP----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 938 -~~p----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+. ..+++||+++.. +++||++ +++.|+++++++.
T Consensus 355 ~~f~~~~~~~~~iRis~~~~-~~~~i~~--~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 355 GPFFANGGGENTLRLSYATL-DREGIAE--GVRRLGRALKGLL 394 (397)
T ss_dssp GGGCTTSCCTTEEEEECSSS-CHHHHHH--HHHHHHHHHHHHH
T ss_pred HHhcCCCCCCCeEEEEcCCC-CHHHHHH--HHHHHHHHHHHHH
Confidence 221 247999999875 8999999 7888888887653
No 176
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.78 E-value=1.8e-17 Score=189.80 Aligned_cols=277 Identities=13% Similarity=0.122 Sum_probs=194.2
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 207 QGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
.|..+...++++.+|+++|.+. ..++.+||.++++++.++ .++||+|+++...|+++...++ ..|.+++.+
T Consensus 84 ~g~~~~~~~l~~~la~~~~~~~--~i~~~sGt~a~~~~l~~~---~~~gd~v~~~~~~~~~~~~~~~----~~g~~~~~~ 154 (399)
T 3tqx_A 84 CGTQTIHKELEKDISEFLGTDD--TILYSSCFDANGGLFETL---LGPEDAIISDELNHASIIDGIR----LCKAQRYRY 154 (399)
T ss_dssp CCCBHHHHHHHHHHHHHHTCSE--EEEESCHHHHHHTTHHHH---CCTTCEEEEETTCCHHHHHHHH----SCCSEEEEE
T ss_pred ccCchHHHHHHHHHHHHHCCCc--EEEECchHHHHHHHHHHh---cCCCCEEEECCcccHHHHHHHH----HcCCceeEe
Confidence 4445667788999999999873 556667776666555443 2488999999999999988764 468888887
Q ss_pred Cc---hhhhc-cCC------CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCC---------c
Q 001989 287 DL---KDIDY-KSG------DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPG---------E 346 (985)
Q Consensus 287 ~~---~~l~~-l~~------~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~---------~ 346 (985)
+. +++++ +.+ ++++|++.+| |++|.+.|+++|.++|+++|+++++| +..+.+.....+ .
T Consensus 155 ~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-e~~~~~~~~~~~~~~~~~~~~~ 233 (399)
T 3tqx_A 155 KNNAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVD-DSHAVGFIGENGRGTPEYCGVA 233 (399)
T ss_dssp CTTCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEE-CTTTTTTSSTTSCCHHHHHTCT
T ss_pred CCCCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEE-CCccccccCCCCCchHHhhCCC
Confidence 54 55555 432 7999999988 88999999999999999999999995 344455433221 1
Q ss_pred ccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhH
Q 001989 347 LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQA 425 (985)
Q Consensus 347 ~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~ 425 (985)
.+.|+++++. |+|++ .|| |++++++++++.+... ...|. ..++.| ...
T Consensus 234 ~~~di~~~s~sK~~~g-----~~g-G~~~~~~~~~~~~~~~----------~~~~~------------~~~~~~---~~~ 282 (399)
T 3tqx_A 234 DRVDILTGTLGKALGG-----ASG-GYTSGHKEIIEWLRNR----------SRPYL------------FSNTVA---PVI 282 (399)
T ss_dssp TCCSEEEEESSSSSCS-----SCC-EEEEECHHHHHHHHHH----------CHHHH------------SSCCCC---HHH
T ss_pred CCCcEEEecchHhccc-----Cce-EEEEcCHHHHHHHHHh----------Cccee------------ccCCCc---HHH
Confidence 2679999998 87752 234 8999998887665210 00000 011111 122
Q ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeee
Q 001989 426 LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVV 502 (985)
Q Consensus 426 l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~ 502 (985)
..+..+++ ..+. ++++++.++..++.+++.+.|+++| +++.. +...-+.+..+. ..++.++|.++||.+...
T Consensus 283 ~~~~~~~l--~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~ 357 (399)
T 3tqx_A 283 VATSLKVL--ELLK-TEGPQLRKQLQENSRYFRAGMEKLG-FQLVP-GNHPIIPVMLGDAQLATNMADHLLQEGIYVVGF 357 (399)
T ss_dssp HHHHHHHH--HHHH-HTHHHHHHHHHHHHHHHHHHHHHHT-CCBCC-CSSSEEEEEEECHHHHHHHHHHHHHTTEECCEE
T ss_pred HHHHHHHH--HHHh-hccHHHHHHHHHHHHHHHHHHHHcC-CCcCC-CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEeee
Confidence 22333332 3322 5678999999999999999999987 77663 222234444443 788999999999987642
Q ss_pred c-------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 D-------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ~-------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. .+.+|++++..+|++|+++++++|.+
T Consensus 358 ~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 391 (399)
T 3tqx_A 358 SYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQ 391 (399)
T ss_dssp CTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHH
Confidence 1 25899999999999999999999974
No 177
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.78 E-value=6.5e-18 Score=188.96 Aligned_cols=273 Identities=17% Similarity=0.128 Sum_probs=182.6
Q ss_pred HHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hhh
Q 001989 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KDI 291 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~~l 291 (985)
++++.+|+++|.+ ...++.+||.+++.++.++ . ++||+|+++...|+++...++.+++..|++++.++. +++
T Consensus 2 ~l~~~la~~~g~~--~~i~~~sG~~a~~~~~~~~-~--~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l 76 (331)
T 1pff_A 2 ALEGKIAKLEHAE--ACAATASGMGAIAASVWTF-L--KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNI 76 (331)
T ss_dssp HHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHH-C--CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHH
T ss_pred hHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHh-c--CCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCCCCHHHH
Confidence 5778999999987 3556667787776666544 2 378999999999999988886544557899988865 556
Q ss_pred hc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHh-CCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 292 DY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHA-NGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 292 ~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~-~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
++ +++++++|++++| |++|.+.|+++|.++|++ +|+++++| +.++.+....+.++|+|++++|. |.|++| |+
T Consensus 77 ~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D-~a~~~~~~~~~~~~~~d~~~~s~~K~~~~~---~~ 152 (331)
T 1pff_A 77 EKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVD-NTFASPILTNPLDLGVDIVVHSATKYINGH---TD 152 (331)
T ss_dssp HHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEE-CTTTHHHHCCGGGGTCSEEEEETTTTTSSS---SS
T ss_pred HHhhcCCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEE-CCCcccccCChhhcCCcEEEEECccccCCC---CC
Confidence 66 7889999999998 789999999999999999 99999995 34555544344578999999998 777654 33
Q ss_pred CcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 368 PHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 368 P~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
+.+|++++++ ++.+++.....+ + . .++.|. ...++..+++ . .+...
T Consensus 153 r~~G~~~~~~~~~~~~l~~~~~~----------~-~------------~~~~~~---~~~~~~~~~l--~-----~~~~~ 199 (331)
T 1pff_A 153 VVAGLVCSRADIIAKVKSQGIKD----------I-T------------GAIISP---HDAWLITRGT--L-----TLDMR 199 (331)
T ss_dssp CCCEEEEECHHHHHHHHHTCCCC----------C-C------------CCCCCH---HHHHHHHHHH--H-----HHHHH
T ss_pred ceEEEEEeCcHHHHHHHHHHHHh----------h-c------------CCCCCH---HHHHHHHcCc--c-----hHHHH
Confidence 3368999998 777665221100 0 0 001111 1111111111 1 12333
Q ss_pred HHHHHHHHHHHHHHHhcCC--------------CeEEcCC---CCcceEEEecCCHHHHHHHHHHcCceeeee-------
Q 001989 447 AQRVHGLAGTFALGLKKLG--------------TVEVQGL---PFFDTVKVKCADAHAIASAAYKIEMNLRVV------- 502 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g--------------~~~~~~~---~~~~~~~~~~~~~~~v~~~L~~~GI~~~~~------- 502 (985)
.++..++..++.+.|++.. ++++... .....+.|..++..++.+.|.++||.++..
T Consensus 200 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~~~s~g~~~s 279 (331)
T 1pff_A 200 VKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLGGPES 279 (331)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHTCSSSEECSSCCSSSC
T ss_pred HHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHhCCCceeccCCCCcce
Confidence 3444445555555554321 1222110 022346666656778888999999965321
Q ss_pred -----------------------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 -----------------------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -----------------------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++.+|+|++..+|++|||+++++|..
T Consensus 280 l~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~ 329 (331)
T 1pff_A 280 LIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDL 329 (331)
T ss_dssp EEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred eeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Confidence 147899999999999999999999974
No 178
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.78 E-value=2.8e-17 Score=190.78 Aligned_cols=294 Identities=15% Similarity=0.112 Sum_probs=200.7
Q ss_pred HhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh--hhc---CCC-------------CEEEEcCCCCh
Q 001989 205 IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN--IQK---GKK-------------KTFIIASNCHP 266 (985)
Q Consensus 205 ~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~--~~~---~~g-------------~~Vlv~~~~H~ 266 (985)
.+++..+.+.++++.+|+++|.++.++.+++|+|.+++.++.++. +.. ++| ++|+++..+|+
T Consensus 55 ~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~ 134 (432)
T 3a9z_A 55 AGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHD 134 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcch
Confidence 345667888899999999999988889999999988887776542 100 144 58999999999
Q ss_pred hHHHHHHHhhcCCCeEEEEeCc---------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCC---------
Q 001989 267 QTIDICITRADGFDIKVVVSDL---------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANG--------- 326 (985)
Q Consensus 267 s~~~~~~~~a~~~gi~v~~v~~---------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~g--------- 326 (985)
++..++..+++..|++++.++. ++|++ +++++++|++++| |.+|.+.|+++|.++|+++|
T Consensus 135 s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~ 214 (432)
T 3a9z_A 135 SIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLP 214 (432)
T ss_dssp HHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhccCCceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCC
Confidence 9999998777667899988865 24555 7788999999988 78999999999999999999
Q ss_pred -cEEEEEecCccccCCC-CCCcccceEEEecCccccccCCCCCCcEEEEEEchhh-HhcCCCceeeeeecCCCCcceeee
Q 001989 327 -VKVVMATDLLALTILK-PPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEY-KRMMPGRIVGVSIDSSGKPALRVA 403 (985)
Q Consensus 327 -alliV~a~~~~lg~l~-~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~-~~~lp~~~vG~t~d~~g~~~~~l~ 403 (985)
+++++| +..+.+... ...++++|+++.|.+|+. ||.+|+++++++. ...+.+.+.|+ .
T Consensus 215 ~~~livD-ea~~~~~~~~~~~~~~~d~~~~s~~K~~------g~~~G~~~~~~~~~~~~~~~~~~~~------~------ 275 (432)
T 3a9z_A 215 RVLVHTD-AAQALGKRRVDVEDLGVDFLTIVGHKFY------GPRIGALYVRGVGKLTPLYPMLFGG------G------ 275 (432)
T ss_dssp CCEEEEE-CTTTTTTSCCCHHHHCCSEEEEEGGGTT------CCSCEEEEETTBTTTBCCCCSCCSS------C------
T ss_pred ceEEEEE-chhhhCCcccChhhcCCCEEEEehhHhc------CCcceEEEEccccccCCcCceeecC------C------
Confidence 999995 344555332 113478999999883332 2458999998765 33332222221 0
Q ss_pred cccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC-CCeEE--cCC----CCc-
Q 001989 404 MQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL-GTVEV--QGL----PFF- 475 (985)
Q Consensus 404 l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~-g~~~~--~~~----~~~- 475 (985)
+..+++.+|.|. ....++.+++ .++ .++++++.++..++++++.+.|+++ | +++ ..+ ...
T Consensus 276 -----~~~~~~~~~~~~---~~~~a~~aal--~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~~~~~ 343 (432)
T 3a9z_A 276 -----QERNFRPGTENT---PMIAGLGKAA--DLV-SENCETYEAHMRDIRDYLEERLEAEFG-KRIHLNSRFPGVERLP 343 (432)
T ss_dssp -----GGGGTSCSCCCH---HHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHG-GGEEESSCCTTCCBCT
T ss_pred -----ccccccCCCcCH---HHHHHHHHHH--HHH-HhhHHHHHHHHHHHHHHHHHHHHhccC-CcEEEeCCCCcccCCC
Confidence 111234456554 2344444444 332 3478899999999999999999885 5 433 222 111
Q ss_pred ceEEEecCC----HHHHHHHHH----HcCceeee------------------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 476 DTVKVKCAD----AHAIASAAY----KIEMNLRV------------------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 476 ~~~~~~~~~----~~~v~~~L~----~~GI~~~~------------------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+.|.+++ ..++.+.|. +.|+.+.. ...+.+|++++.++|++|+++++++|+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~ 423 (432)
T 3a9z_A 344 NTCNFSIQGSQLRGYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQ 423 (432)
T ss_dssp TEEEEEECSTTCCHHHHHHHCSSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHhcCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 234444332 555655442 12332211 0137899999999999999999999974
No 179
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.78 E-value=3.8e-18 Score=210.89 Aligned_cols=305 Identities=14% Similarity=0.093 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
.+.++++.+++++|.+...++.+++++++.+++.++. .++|+||++...|.++...+...|++++.++.+.+
T Consensus 206 ~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~--------~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~ 277 (755)
T 2vyc_A 206 AFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACM--------TDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRN 277 (755)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHC--------CTTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBC
T ss_pred HHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhc--------CCCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCC
Confidence 3668899999999998654555555566655554432 47899999999998877778889999999987643
Q ss_pred -----CCC-----CHHHHHHHHHhcCCCE--------EEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccc-
Q 001989 713 -----GNI-----NIEELRKAAEANRDNL--------STLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ- 773 (985)
Q Consensus 713 -----g~i-----D~e~L~~~i~~~~~~t--------~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~- 773 (985)
|.+ |+++|+++|+++ +++ ++|++++||++|.+. |+++|+++||++|++|+||+||....
T Consensus 278 ~~g~~g~i~~~~~d~e~le~~i~~~-~~~k~~~~~~~klvil~~pn~~G~v~-dl~~I~~ia~~~~~~livDeA~~~~~~ 355 (755)
T 2vyc_A 278 RYGIIGPIYPQEMQPETLQKKISES-PLTKDKAGQKPSYCVVTNCTYDGVCY-NAKEAQDLLEKTSDRLHFDEAWYGYAR 355 (755)
T ss_dssp TTSCBCCCCGGGGSHHHHHHHHHHC-TTTGGGTTCCCSCEEEESSCTTSEEE-CHHHHHHHHTTTCSEEEEECTTCTTGG
T ss_pred ccccccccCcCCCCHHHHHHHHHhC-ccccccccCCCeEEEEECCCCCceec-CHHHHHHHHHHcCCEEEEECcCchhcc
Confidence 346 999999999742 234 389999999999998 89999999999999999999985211
Q ss_pred -cCC---CCCCccC--CcE------EEeCCcccccccCCCCCC-ceEEEEEccc--ccCcCC-CCccccCCCCCCCCCCC
Q 001989 774 -VGL---TSPGYIG--ADV------CHLNLHKTFCIPHGGGGP-GMGPIGVKKH--LAPFLP-SHPVVSTGGIPAPEKSQ 837 (985)
Q Consensus 774 -~~l---~~pg~~g--~Di------~~~s~hK~l~~p~g~GGP-g~G~i~~~~~--l~~~lp-~~~~g~~~~~~~~~~~~ 837 (985)
+.. ..+. .+ +|+ ++.|+||+++ || ++|++++++. ...... ...... ...
T Consensus 356 ~~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L~------g~~~g~~i~~~~~~~~i~~~~~~~~~~~--------~~s 420 (755)
T 2vyc_A 356 FNPIYADHYAM-RGEPGDHNGPTVFATHSTHKLLN------ALSQASYIHVREGRGAINFSRFNQAYMM--------HAT 420 (755)
T ss_dssp GCGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSSS------CCTTCEEEEEECCBTCCCHHHHHHHHHH--------TSC
T ss_pred cCcccCCcchh-cCCcCCccCCCeEEEECcccccc------CcCCeeeeeecCcccccCHHHHHHHHHH--------hCC
Confidence 110 1122 56 786 9999999973 55 5788888765 221000 000000 000
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--c---------CCeeecCC---------
Q 001989 838 PLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--H---------YPILFRGV--------- 897 (985)
Q Consensus 838 ~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g---------~~l~~~~~--------- 897 (985)
++++ + ..+++.-+++..+..+|..+..++..+++++++++|++ + +++..+..
T Consensus 421 ~sp~----~----~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (755)
T 2vyc_A 421 TSPL----Y----AICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKT 492 (755)
T ss_dssp SSCC----H----HHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCE
T ss_pred CCHH----H----HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccc
Confidence 1111 1 11111123344555554466777888999999999976 4 43321100
Q ss_pred ---------------------------------CCc-e--eeEEEEEecCcc-----ccCCCCHHHHHHHHHHCCCccCC
Q 001989 898 ---------------------------------NGT-V--AHEFIVDLRGLK-----NTAGIEPEDVAKRLMDYGFHGPT 936 (985)
Q Consensus 898 ---------------------------------~~~-~--~~~~iv~~~~~~-----~~~g~~~~~v~~~L~~~Gi~~~~ 936 (985)
.+. . ...+.+.++++. .+.|+++.++.+.|.++||.+..
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~ 572 (755)
T 2vyc_A 493 YDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTR 572 (755)
T ss_dssp EEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSE
T ss_pred cccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEee
Confidence 000 0 012344444211 11257779999999999998753
Q ss_pred CCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 937 MSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 937 ~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.. .+.+|++++..+|++++++ ++++|+++.+...
T Consensus 573 ~~---~~~v~~~~~~g~t~~~~~~--l~~al~~~~~~~~ 606 (755)
T 2vyc_A 573 TT---DFQIMFLFSMGVTRGKWGT--LVNTLCSFKRHYD 606 (755)
T ss_dssp EC---SSEEEEECCTTCCTTTTHH--HHHHHHHHHHHHH
T ss_pred cC---CCeEEEEECCCCCHHHHHH--HHHHHHHHHHhhh
Confidence 32 4799999999999999999 7788888766543
No 180
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.78 E-value=8.1e-19 Score=198.67 Aligned_cols=297 Identities=10% Similarity=0.033 Sum_probs=185.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCCc-cc-ee-cCcHHHHHHHHHHHHHHHHHhcCCCCCCEE--EEcCCCCcccHHH--HHHC
Q 001989 628 QGYQEMFNNLGEWLCTITGFDS-FS-LQ-PNAGAAGEYAGLMVIRAYHKARGDHHRNVC--IIPVSAHGTNPAT--AAMC 700 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~-~~-~~-~~sGa~a~~a~l~air~~~~~~g~~~~~~I--Iv~~~~Hg~~~~~--a~~~ 700 (985)
+.+.++++++++.+++++|.+. .. ++ .++|++++ .+++.++. +++++ ++.. .+ ++++. ++..
T Consensus 46 ~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~---n~~~~~~~------~~~~~~~i~~~-~~-~~~~~~~a~~~ 114 (361)
T 3m5u_A 46 KVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQF---AMIPMNLA------LNGVCEYANTG-VW-TKKAIKEAQIL 114 (361)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH---HHHHHHHC------CSSCEEEEECS-HH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHH---HHHHHhcC------CCCeEEEEeCC-HH-HHHHHHHHHHc
Confidence 3467889999999999999963 23 44 55566555 44455442 23433 3332 22 44433 4567
Q ss_pred CcEEEEEcCCCCCC--CCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC
Q 001989 701 GMKIVSVGTDAKGN--INIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT 777 (985)
Q Consensus 701 G~~vv~v~~d~~g~--iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~ 777 (985)
|+++++++++++|. +++++ + |+ ++|++|++++. |.+|++.++ | ++ +|++++||++|.++...+
T Consensus 115 G~~v~~~~~~~~g~~~~~~~~-~--l~---~~t~lv~~~~~e~~tG~~~~~---i---~~-~~~~~~vD~~q~~g~~~i- 180 (361)
T 3m5u_A 115 GVNVKTVASSEESNFDHIPRV-E--FS---DNADYAYICSNNTIYGTQYQN---Y---PK-TKTPLIVDASSDFFSRKV- 180 (361)
T ss_dssp TCCEEEEEECTTTTSCSCCCC-C--CC---TTSSEEEEESEETTTTEECSS---C---CC-CSSCEEEECGGGTTSSCC-
T ss_pred CCceEEEecccCcCCCcCChh-h--cC---CCCCEEEEeCCCCCcceeCCc---c---cc-cCCEEEEEcccccCCCCC-
Confidence 99999999988874 57766 3 76 78999988875 568998632 3 33 499999999997554443
Q ss_pred CCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCC----CccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 778 SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS----HPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 778 ~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~----~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
+.. .+|++++++||++ |.||+|++++++++.+.+++ .++.+... .......+|+++. +. ..+
T Consensus 181 d~~--~~d~~~~s~~K~~------gp~G~g~l~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~Tp~v~----~i-~~l 246 (361)
T 3m5u_A 181 DFS--NIALFYGGVQKNA------GISGLSCIFIRKDMLERSKNKQIPSMLNYLTH-AENQSLFNTPPTF----AI-YMF 246 (361)
T ss_dssp CCT--TEEEEEEETTTTS------SCTTCEEEEEEHHHHHHHHTCCCCGGGCHHHH-HHTTTCSSCCCHH----HH-HHH
T ss_pred Ccc--cCCEEEEechhcc------CCCccEEEEEcHHHHhhhcCCCCCceeehHHH-hhcCCCCCCccHH----HH-HHH
Confidence 222 3699999999998 34689999999876533211 11111000 0000112233332 11 112
Q ss_pred HHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHhhccCCe--eecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC
Q 001989 854 PISYTYIAMMGSK-GLTEASKIAILNANYMAKRLEKHYPI--LFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY 930 (985)
Q Consensus 854 ~~a~a~l~~lg~e-Gl~~~~~~~~~~a~~l~~~L~~g~~l--~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~ 930 (985)
.+.++.+..+ |+.++.++..+++++++++|++..++ .+..+.......+.+.+++. .+.+ .++.+.|.++
T Consensus 247 ---~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~---~~~~-~~~~~~L~~~ 319 (361)
T 3m5u_A 247 ---NLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSLMNVSFNIAKN---KDLE-PLFVKEAEEA 319 (361)
T ss_dssp ---HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGGBCSSEEEEEESSC---TTHH-HHHHHHHHHT
T ss_pred ---HHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHHcCCeEEEEECCCc---hhhh-HHHHHHHHHC
Confidence 2345555555 68888889999999999999872212 11111111112344555410 0123 4788899999
Q ss_pred CCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 931 GFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 931 Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
||.+..-... .+++|+|+..++|+||||+ +++.|+++.++
T Consensus 320 gI~~~~g~~~-~g~iRiS~~~~~t~edId~--l~~al~~~~~~ 359 (361)
T 3m5u_A 320 GMIGLKGHRI-LGGIRASIYNALNLDQVKT--LCEFMKEFQGK 359 (361)
T ss_dssp TEECCBCCTT-TCSEEEECCTTSCHHHHHH--HHHHHHHHHHH
T ss_pred CCEEecCCCc-cCeEEEEccCCCCHHHHHH--HHHHHHHHHHh
Confidence 9987432211 2679999999999999999 77888888765
No 181
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.77 E-value=1.6e-16 Score=179.93 Aligned_cols=298 Identities=11% Similarity=0.021 Sum_probs=205.4
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhh
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI 250 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~ 250 (985)
++.|.++...|+.+.+++.+.-+ .+..|. . ....++++.+|+++|.++.++.+++|+|.+++.++.++ .
T Consensus 37 l~~~~~~~~~~~~v~~a~~~~~~---~~~~y~-~------~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~-~ 105 (363)
T 3ffh_A 37 LSSNENPLGTSKKVAAIQANSSV---ETEIYP-D------GWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVL-L 105 (363)
T ss_dssp CSSCSCTTCCCHHHHHHHHTCBS---CCCBC-----------CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH-C
T ss_pred ccCCCCCCCCCHHHHHHHHHHHH---HhhcCC-C------cchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHH-c
Confidence 34555566677777656554322 222231 1 12457889999999998889999999998888777655 2
Q ss_pred hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHH
Q 001989 251 QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIK 320 (985)
Q Consensus 251 ~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~ 320 (985)
++||+|+++...|+++...++. .|++++.++. +++++ +++++++|++.+| |.+|.+.|++++.+
T Consensus 106 --~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~~~~l~~ 179 (363)
T 3ffh_A 106 --DTTTNTVMATPTFVQYRQNALI----EGAEVREIPLLQDGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQA 179 (363)
T ss_dssp --STTCEEEEEESSCHHHHHHHHH----HTCEEEEEECCTTSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred --cCCCEEEEcCCChHHHHHHHHH----cCCEEEEecCCCCCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCcCHHHHHH
Confidence 3789999999999998887754 4778877754 35666 7889999999998 78999999999999
Q ss_pred HHHhC--CcEEEEEecCccccCC---CC----CCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeee
Q 001989 321 NAHAN--GVKVVMATDLLALTIL---KP----PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGV 390 (985)
Q Consensus 321 ~a~~~--galliV~a~~~~lg~l---~~----~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~ 390 (985)
+++.+ |+++++|. ..+.... .. ....+-+++++|. |.++. +|..+|++++++++.+.+...
T Consensus 180 l~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~l~~~---- 250 (363)
T 3ffh_A 180 FLDRVPSDVLVVLDE-AYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGL----ASARVGYGIADKEIIRQLNIV---- 250 (363)
T ss_dssp HHTTSCTTSEEEEEC-TTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCC----SSCCCEEEEECHHHHHHHHHT----
T ss_pred HHHhCCCCcEEEEeC-chHhhcCccccCHHHHhhcCCCEEEEeechhhhcC----chhceeeeecCHHHHHHHHHh----
Confidence 99988 99999953 3331111 11 1223445778776 76642 233459999998887665110
Q ss_pred eecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc-CCCeEE
Q 001989 391 SIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEV 469 (985)
Q Consensus 391 t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~ 469 (985)
. ...+.| .....+..++ +. ..+.++++.++..++.+++.+.|++ .| +++
T Consensus 251 ------~----------------~~~~~~---~~~~~~~~~~--l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~g-~~~ 300 (363)
T 3ffh_A 251 ------R----------------PPFNTT---SIGQKLAIEA--IK--DQAFIGECRTSNANGIKQYEAFAKRFEK-VKL 300 (363)
T ss_dssp ------C----------------CSCCCB---HHHHHHHHHH--HH--CHHHHHHHHHHHHHHHHHHHHHHHHCTT-CEE
T ss_pred ------C----------------CCCCCC---HHHHHHHHHH--hc--CHHHHHHHHHHHHHHHHHHHHHHhhCCC-ceE
Confidence 0 000111 1112222222 22 3367888999999999999999999 56 887
Q ss_pred cCCCCcceEEEecCC-HHHHHHHHHHcCceeeee----cCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 470 QGLPFFDTVKVKCAD-AHAIASAAYKIEMNLRVV----DSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 470 ~~~~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~~----~~~~lris~t~~~t~edId~li~aL~ 528 (985)
... ...-+.+..+. ..++.+.|.++||.+... .++.+|++++ |++|+|+++++|+
T Consensus 301 ~~~-~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~l~ 360 (363)
T 3ffh_A 301 YPA-NGNFVLIDLGIEAGTIFSYLEKNGYITRSGAALGFPTAVRITIG---KEEDNSAVIALLE 360 (363)
T ss_dssp CCC-CSSEEEEECSSCHHHHHHHHHHTTEECEETTTTTCTTEEEEECC---CHHHHHHHHHHHH
T ss_pred CCC-CCeEEEEECCCCHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC---CHHHHHHHHHHHH
Confidence 632 12235566664 889999999999988653 2589999987 9999999999986
No 182
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.77 E-value=2.1e-17 Score=188.19 Aligned_cols=280 Identities=13% Similarity=0.075 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-- 288 (985)
+.+.++++.+|+++|.+ ++.++++||.+++.++.++.. ++||+|+++...|+++...++. .|++++.++.
T Consensus 36 ~~~~~l~~~la~~~~~~--~~i~~~sgt~al~~~l~~l~~--~~gd~Vi~~~~~~~~~~~~~~~----~g~~~~~~~~~~ 107 (373)
T 3frk_A 36 DEDKKFEQEFADYCNVN--YCIGCGNGLDALHLILKGYDI--GFGDEVIVPSNTFIATALAVSY----TGAKPIFVEPDI 107 (373)
T ss_dssp HHHHHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHTTC--CTTCEEEEETTSCTHHHHHHHH----HSCEEEEECEET
T ss_pred chHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcCC--CCcCEEEECCCCcHHHHHHHHH----cCCEEEEEeccc
Confidence 34667889999999987 578889999888877766533 3889999999999999988754 3777777654
Q ss_pred -------hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCccc--ceEEEec--C
Q 001989 289 -------KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELG--ADIVVGS--A 356 (985)
Q Consensus 289 -------~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~G--aDi~v~s--~ 356 (985)
+++++ +++++++|++++ ++|.+.|+++|.++|+++|+++++| +..+.|.......+| +|+++.| +
T Consensus 108 ~~~~~d~~~l~~~l~~~~~~v~~~n--~~G~~~~l~~i~~l~~~~~~~li~D-~a~~~g~~~~~~~~~~~~d~~~~S~~~ 184 (373)
T 3frk_A 108 RTYNIDPSLIESAITEKTKAIIAVH--LYGQPADMDEIKRIAKKYNLKLIED-AAQAHGSLYKGMKVGSLGDAAGFSFYP 184 (373)
T ss_dssp TTTEECGGGTGGGCCTTEEEEEEEC--CTTCCCCHHHHHHHHHHHTCEEEEE-CTTCTTCEETTEETTSSSSEEEEECCT
T ss_pred cccCcCHHHHHHhcCCCCeEEEEEC--CCcCcccHHHHHHHHHHcCCEEEEE-CCcccCCEECCEeccccccEEEEeCcC
Confidence 34566 778999988654 7899999999999999999999995 345555443334556 7999988 4
Q ss_pred -ccccccCCCCCCcEEEEEEch-hhHhcCCCceeeeeecCCCCc-ceeeecccccccccccccCCCccchhHHHHHHHHH
Q 001989 357 -QRFGVPMGYGGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKP-ALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 357 -k~lg~P~~~GGP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~-~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~ 433 (985)
|.+++ .+ ..|++++++ ++.+.+.....+ |.. .|.. ...|. |. .+.++.+++
T Consensus 185 ~K~l~~-~g----~gg~~~~~~~~~~~~~~~~~~~------g~~~~~~~----------~~~g~-~~----~~~~~~aa~ 238 (373)
T 3frk_A 185 AKNLGS-LG----DGGAVVTNDKDLAEKIKALSNY------GSEKKYHH----------IYKGF-NS----RLDELQAGF 238 (373)
T ss_dssp TSSSCC-SS----SCEEEEESCHHHHHHHHHHHBT------TCSBTTBC----------CSCCC-BC----CCCHHHHHH
T ss_pred CCccCc-cc----eeEEEEeCCHHHHHHHHHHHhc------CcccCCcc----------ccccc-cC----CCCHHHHHH
Confidence 55532 11 246777764 454443211111 100 0100 01111 11 111233333
Q ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-----CCcceEEEecCCHHHHHHHHHHcCceeeeec-----
Q 001989 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-----PFFDTVKVKCADAHAIASAAYKIEMNLRVVD----- 503 (985)
Q Consensus 434 ~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-----~~~~~~~~~~~~~~~v~~~L~~~GI~~~~~~----- 503 (985)
.+...++++++.++..++++++++.|++++ +++... ..+..+.+..++..++.+.|.++||.++...
T Consensus 239 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~ 315 (373)
T 3frk_A 239 --LRVKLKYLDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRSEKRDELQKYLNNNGIGTLIHYPIPIH 315 (373)
T ss_dssp --HHHHHHTHHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEESSHHHHHHHHHHTTBCCBCSCSSCGG
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEeCCHHHHHHHHHHCCCCcccCcCCccc
Confidence 222235778889999999999999999988 776532 1223455555458899999999999775321
Q ss_pred ----------------------CCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001989 504 ----------------------SNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 504 ----------------------~~~lris~t~~~t~edId~li~aL~~~ 530 (985)
.+.+|++++.++|++|||+++++|++-
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~ 364 (373)
T 3frk_A 316 LQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAW 364 (373)
T ss_dssp GSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTC
T ss_pred cChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHH
Confidence 157999999999999999999999864
No 183
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.77 E-value=5.4e-18 Score=195.86 Aligned_cols=303 Identities=12% Similarity=0.081 Sum_probs=192.0
Q ss_pred HHHHHHHHHhC------------CCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCc
Q 001989 636 NLGEWLCTITG------------FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGM 702 (985)
Q Consensus 636 e~~~~la~l~G------------~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~ 702 (985)
++++.++++++ .+... ++.++|++++..++.++ ..++++|+++.+.|..+...++..|+
T Consensus 79 ~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l--------~~~gd~vl~~~p~y~~~~~~~~~~g~ 150 (416)
T 1bw0_A 79 EAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAI--------CDAGDYALVPQPGFPHYETVCKAYGI 150 (416)
T ss_dssp HHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHH--------CCTTCEEEEEESCCTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHh--------CCCCCEEEEcCCCcHhHHHHHHHcCc
Confidence 45555666555 44434 44555666664444332 13678999988877777777888999
Q ss_pred EEEEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccC---HHHHHHHHHHcCCEEEEEccccccc-cC
Q 001989 703 KIVSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQ-VG 775 (985)
Q Consensus 703 ~vv~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~-~~ 775 (985)
+++.+|++++ +.+|+++|+++++ +++++|++++|+ ++|.+. + +++|.++|+++|+++++|+++.... .+
T Consensus 151 ~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g 226 (416)
T 1bw0_A 151 GMHFYNCRPENDWEADLDEIRRLKD---DKTKLLIVTNPSNPCGSNF-SRKHVEDIVRLAEELRLPLFSDEIYAGMVFKG 226 (416)
T ss_dssp EEEEEEEEGGGTTEECHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCCS
T ss_pred EEEEeecCcccCCCCCHHHHHHHhc---cCCeEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCC
Confidence 9999998653 5689999999997 789999999995 699987 6 9999999999999999999985311 11
Q ss_pred ------CCCCCcc---CCcEEEeCCcccccccCCCCCCceEEEEEccc--ccCcCCCCccccCCCCCCCCCCCCCCCCCC
Q 001989 776 ------LTSPGYI---GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--LAPFLPSHPVVSTGGIPAPEKSQPLGTIAA 844 (985)
Q Consensus 776 ------l~~pg~~---g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~--l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s 844 (985)
+.....+ +.++++.|++|+|+.| |.++|+++++++ +.+.+...... ....+.+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----Glr~G~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-- 291 (416)
T 1bw0_A 227 KDPNATFTSVADFETTVPRVILGGTAKNLVVP----GWRLGWLLYVDPHGNGPSFLEGLKR---------VGMLVCGP-- 291 (416)
T ss_dssp SCTTCCCCCTTSSCCSCCEEEEEESTTTTSCG----GGCCEEEEEECTTCSCHHHHHHHHH---------HHHHHTCS--
T ss_pred CCCCCCccCHHHccCCCcEEEEecchhhCCCC----CceEEEEEeeCchhhHHHHHHHHHH---------HhccccCC--
Confidence 1111111 2246778999998543 556899998763 43322100000 00000011
Q ss_pred cchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHH
Q 001989 845 APWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVA 924 (985)
Q Consensus 845 ~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~ 924 (985)
+.....++.++|..+..+++.+..++..++++++.+.|++..++....+.+..+ +.+.++......+.+..++.
T Consensus 292 ----~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 365 (416)
T 1bw0_A 292 ----CTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMY--LMSRIDLEKYRDIKTDVEFF 365 (416)
T ss_dssp ----CHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTE--EEEEECGGGBSSCCSHHHHH
T ss_pred ----CcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEE--EEEeCCHHHcCCCCCHHHHH
Confidence 112223333455544566777778888889999999998632332222222222 23444310000124678888
Q ss_pred HHHH-HCCCccCCC-CCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 925 KRLM-DYGFHGPTM-SWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 925 ~~L~-~~Gi~~~~~-~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
++|. ++||.+... .+..++++||+++ .++++|++ .++.|++++++.+
T Consensus 366 ~~l~~~~gi~v~~g~~f~~~~~iRis~~--~~~e~l~~--~l~~l~~~l~~~~ 414 (416)
T 1bw0_A 366 EKLLEEENVQVLPGTIFHAPGFTRLTTT--RPVEVYRE--AVERIKAFCQRHA 414 (416)
T ss_dssp HHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHH--HHHHHHHHHHHHB
T ss_pred HHHHHHCCEEEecccccCCCCeEEEEec--CCHHHHHH--HHHHHHHHHHHhh
Confidence 8884 789987542 2323589999995 68999999 7788888887654
No 184
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.77 E-value=5.4e-17 Score=186.78 Aligned_cols=276 Identities=17% Similarity=0.118 Sum_probs=192.1
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-- 288 (985)
....++++.+++++|.+ ...++.+||++++.++.++ . ++||+|++++..|+++...++.+++..|++++.++.
T Consensus 65 ~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~-~--~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d 139 (398)
T 1gc0_A 65 PTLNLLEARMASLEGGE--AGLALASGMGAITSTLWTL-L--RPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMAD 139 (398)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHH-C--CTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTC
T ss_pred hHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHH-h--cCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCC
Confidence 44567889999999987 4667778887777666554 2 378999999999999999987666678999999875
Q ss_pred -hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCC
Q 001989 289 -KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMG 364 (985)
Q Consensus 289 -~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~ 364 (985)
+++++ +++++++|++++| |.+|.+.|+++|+++||++|+++++| +.++.+....+..+|+|+++.|. |.|++|
T Consensus 140 ~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-~~~~~~~~~~~~~~~~d~~~~S~sK~~~~~-- 216 (398)
T 1gc0_A 140 LQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVD-NTYCTPYLQRPLELGADLVVHSATKYLSGH-- 216 (398)
T ss_dssp HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEE-CTTTHHHHCCGGGGTCSEEEEETTTTTTCS--
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEE-CCCcccccCCchhhCceEEEECCccccCCC--
Confidence 45666 7889999999998 67999999999999999999999995 35555544455678999999998 777643
Q ss_pred CCCCcEEEEEEchhhHh-cCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchH
Q 001989 365 YGGPHAAFLATSQEYKR-MMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGL 443 (985)
Q Consensus 365 ~GGP~~G~l~~~~~~~~-~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl 443 (985)
|+|-+|+++++++.++ .+.... +. ...++.|. ...++..++ .+.+
T Consensus 217 -~~~~~G~l~~~~~~~~~~~~~~~----------------------~~-~~~~~~~~---~~~~~~~~~-------l~~~ 262 (398)
T 1gc0_A 217 -GDITAGIVVGSQALVDRIRLQGL----------------------KD-MTGAVLSP---HDAALLMRG-------IKTL 262 (398)
T ss_dssp -SSCCCEEEEECHHHHHHHHHTHH----------------------HH-HTCCCCCH---HHHHHHHHH-------HTTH
T ss_pred -CCCeEEEEEEChHHHHHHHHHHh----------------------hc-cCCCCCCH---HHHHHHHhc-------cchH
Confidence 2233589999877654 221000 00 00111111 111111111 1345
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeE--------------EcCC---CCcceEEEecCC-HHHHHHHHHHcCceeee----
Q 001989 444 KTIAQRVHGLAGTFALGLKKLGTVE--------------VQGL---PFFDTVKVKCAD-AHAIASAAYKIEMNLRV---- 501 (985)
Q Consensus 444 ~~i~~~~~~~a~~l~~~L~~~g~~~--------------~~~~---~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~---- 501 (985)
+...++..+++.++.+.|++++.++ +..+ ...+.+.|.+++ ..++.+.|.+.|+....
T Consensus 263 ~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~i~~~~~s~G 342 (398)
T 1gc0_A 263 NLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLG 342 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHHHHHHHCSSSEECSCCS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCCHHHHHHHHHhCCCceeccCCC
Confidence 6667777888888888888764333 1111 123456777766 55677777777875421
Q ss_pred --------------------------ecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 502 --------------------------VDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 502 --------------------------~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
+.++.+|+|++..+++++|+.|.++|.
T Consensus 343 ~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~ 395 (398)
T 1gc0_A 343 DAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALK 395 (398)
T ss_dssp CSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHH
T ss_pred CcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHH
Confidence 013789999999999999999999986
No 185
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.77 E-value=5.7e-17 Score=190.32 Aligned_cols=312 Identities=15% Similarity=0.150 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHHhCCCcc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC--------
Q 001989 632 EMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG-------- 701 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G-------- 701 (985)
+...+++++++++++.+.. .++.+||++|+++++++++.|...+|..++++||+ ...+||.........|
T Consensus 95 ~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~ 174 (460)
T 3gju_A 95 EASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAF 174 (460)
T ss_dssp HHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTT
T ss_pred HHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCccccccc
Confidence 3456788999999865543 46678999999999998888766666445677877 5678887766544322
Q ss_pred ----cEEEEEcCCC-----CCCCC--------HHHHHHHHHhcC-CCEEEEEEEcCC-CccccccC---HHHHHHHHHHc
Q 001989 702 ----MKIVSVGTDA-----KGNIN--------IEELRKAAEANR-DNLSTLMVTYPS-THGVYEEG---IDEICKIIHDN 759 (985)
Q Consensus 702 ----~~vv~v~~d~-----~g~iD--------~e~L~~~i~~~~-~~t~~Vvv~~pn-~~G~i~~d---i~eI~~la~~~ 759 (985)
..+..+|... +...| +++|++++++.. +++++|+++.++ +.|.+.++ +++|.++|+++
T Consensus 175 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~ 254 (460)
T 3gju_A 175 DLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKY 254 (460)
T ss_dssp TCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT
T ss_pred CCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHc
Confidence 1345555322 11123 689999987432 467777776554 46765411 99999999999
Q ss_pred CCEEEEEccccccccCCCCCCc--------cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCC
Q 001989 760 GGQVYMDGANMNAQVGLTSPGY--------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIP 831 (985)
Q Consensus 760 galliVD~a~~~~~~~l~~pg~--------~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~ 831 (985)
|++||+|+++. ++.+.+. ..+|++++| |+++ +|+..+|++++++++.+.+....... .
T Consensus 255 ~~llI~DEv~~----g~gr~g~~~~~~~~~~~pdi~t~s--K~l~----gG~~~lg~v~~~~~i~~~~~~~~~~~-~--- 320 (460)
T 3gju_A 255 DVLLVADEVVT----GFGRLGTMFGSDHYGIKPDLITIA--KGLT----SAYAPLSGVIVADRVWQVLVQGSDKL-G--- 320 (460)
T ss_dssp TCEEEEECTTT----TTTTTSSSCHHHHHTCCCSEEEEC--GGGT----TTSSCCEEEEEEHHHHHHHHHHHHHH-C---
T ss_pred CCEEEEecccc----CCCcccccchHhhcCCCCCeeeee--hhhc----CCCCCeEEEEECHHHHHHHhcccccc-c---
Confidence 99999999874 2222221 236888764 8873 23367899998887765542100000 0
Q ss_pred CCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc---cCC-ee-ecCCCCceeeEEE
Q 001989 832 APEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---HYP-IL-FRGVNGTVAHEFI 906 (985)
Q Consensus 832 ~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~---g~~-l~-~~~~~~~~~~~~i 906 (985)
. . ...+++.+++++++++.+.|..+..+++. ++..++.++++++|.+ .+. +. ..+ .+.+ +.
T Consensus 321 ---~---~-~~~~t~~~~~~~~aaa~aal~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~g~~---~~ 386 (460)
T 3gju_A 321 ---S---L-GHGWTYSAHPICVAAGVANLELIDEMDLV---TNAGETGAYFRAELAKAVGGHKNVGEVRG-DGML---AA 386 (460)
T ss_dssp ---S---C-SCCCTTTTCHHHHHHHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHHHHTTSTTEEEEEE-ETTE---EE
T ss_pred ---c---c-ccCCCCCCCHHHHHHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHHHHhcCCCeEEEee-eeEE---EE
Confidence 0 0 00011223455556666777766554433 3455566666666643 122 11 111 1221 22
Q ss_pred EEecCccc------cCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 907 VDLRGLKN------TAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 907 v~~~~~~~------~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+.+..-.. .......++.+.|.++|+.+..... .+.+||+|+...|+|||++ +++.|+++++++.
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~iRi~~~~~~t~e~i~~--~l~~l~~~l~~~~ 457 (460)
T 3gju_A 387 VEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQ--GDILGFAPPLCLTREQADI--VVSKTADAVKSVF 457 (460)
T ss_dssp EEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECSS--SCEEEECCCTTCCHHHHHH--HHHHHHHHHHHHH
T ss_pred EEEccCccccccccchHHHHHHHHHHHHHCCeEEecCCC--CCEEEEECCCCCCHHHHHH--HHHHHHHHHHHHH
Confidence 33321000 0001156789999999998754431 3899999999999999999 8899999888764
No 186
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.77 E-value=1.3e-17 Score=196.54 Aligned_cols=312 Identities=15% Similarity=0.121 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc-------
Q 001989 632 EMFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------- 702 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------- 702 (985)
+...+++++++++++.+. ..++.+||++|+++++++++.+...+|..++++||+ ...+||.........|.
T Consensus 97 ~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~ 176 (476)
T 3i5t_A 97 SPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNF 176 (476)
T ss_dssp HHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTS
T ss_pred HHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhcccc
Confidence 345688899999986433 346778999999999999988876676555677776 56788877655432221
Q ss_pred -----EEEEEcCCC--CC-CCC--------HHHHHHHHHhcC-CCEEEEEEEcCC-CccccccC---HHHHHHHHHHcCC
Q 001989 703 -----KIVSVGTDA--KG-NIN--------IEELRKAAEANR-DNLSTLMVTYPS-THGVYEEG---IDEICKIIHDNGG 761 (985)
Q Consensus 703 -----~vv~v~~d~--~g-~iD--------~e~L~~~i~~~~-~~t~~Vvv~~pn-~~G~i~~d---i~eI~~la~~~ga 761 (985)
.+..++... .. ..| +++|++++++.. +++++|+++.++ ..|.+.++ +++|.++|+++|+
T Consensus 177 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gi 256 (476)
T 3i5t_A 177 DIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDI 256 (476)
T ss_dssp CCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTC
T ss_pred CCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCC
Confidence 233444321 11 112 889999987432 467888887653 56765422 9999999999999
Q ss_pred EEEEEccccccccCCCCC---C-c--cCCcEEEeCCcccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCC
Q 001989 762 QVYMDGANMNAQVGLTSP---G-Y--IGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPE 834 (985)
Q Consensus 762 lliVD~a~~~~~~~l~~p---g-~--~g~Di~~~s~hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~ 834 (985)
+||+|++|. +++-.+.. . . ..+|+++++ |+++ || ..+|++++++++.+.+......
T Consensus 257 llI~DEv~~-g~gr~G~~~~~~~~~~v~pdi~t~s--K~l~-----~G~~plg~v~~~~~i~~~~~~~~~~--------- 319 (476)
T 3i5t_A 257 LYISDEVVT-GFGRCGEWFASEKVFGVVPDIITFA--KGVT-----SGYVPLGGLAISEAVLARISGENAK--------- 319 (476)
T ss_dssp EEEEECTTT-TTTTTSSSCHHHHTTCCCCSEEEEC--GGGG-----TTSSCCEEEEECHHHHHTTSGGGCT---------
T ss_pred EEEEEeccc-CCccccCceeeecccCCCcchhhhh--hhhc-----CCCcCeEEEEECHHHHHHHhcCCcc---------
Confidence 999999874 22111111 1 1 236888765 8874 45 6788999998877655321000
Q ss_pred CCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc--CCee--ecCCCCceeeEEEEEec
Q 001989 835 KSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLR 910 (985)
Q Consensus 835 ~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g--~~l~--~~~~~~~~~~~~iv~~~ 910 (985)
.... ...+++.+++++++++.+.|..+..+++ .++..++.++++++|++. +..+ +.+ .+. + +.+.+.
T Consensus 320 -~~~~-~~~~t~~~np~a~aAa~aaL~~~~~~~~---~~~~~~~~~~l~~~L~~l~~~~~v~~v~~-~G~-~--~~i~~~ 390 (476)
T 3i5t_A 320 -GSWF-TNGYTYSNQPVACAAALANIELMEREGI---VDQAREMADYFAAALASLRDLPGVAETRS-VGL-V--GCVQCL 390 (476)
T ss_dssp -TCEE-CCCCTTTTCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHTTTTSTTEEEEEE-ETT-E--EEEEEC
T ss_pred -cccc-cccCCCCcCHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHhcCCCeEEEEe-cCc-e--eEEEEe
Confidence 0000 0011233456666777777777655444 446667788888888751 2211 111 111 1 233432
Q ss_pred CccccCCC-------CHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 911 GLKNTAGI-------EPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 911 ~~~~~~g~-------~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.... ... ....+.+.|.++|+.+... .+.+||+|+..+|++|||+ +++.|+++++++..
T Consensus 391 ~~~~-~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----g~~iRi~p~l~~t~e~i~~--~l~~l~~~l~~~~~ 456 (476)
T 3i5t_A 391 LDPT-RADGTAEDKAFTLKIDERCFELGLIVRPL----GDLCVISPPLIISRAQIDE--MVAIMRQAITEVSA 456 (476)
T ss_dssp CC------CCHHHHHHHHHHHHHHHHTTEECEEE----TTEEEECCCTTCCHHHHHH--HHHHHHHHHHHHHH
T ss_pred cCcc-ccccccchhHHHHHHHHHHHHCCCEEEec----CCEEEEECCCCCCHHHHHH--HHHHHHHHHHHHHH
Confidence 1000 000 1567889999999988543 2799999999999999999 88999999877654
No 187
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.77 E-value=6.4e-18 Score=196.86 Aligned_cols=209 Identities=18% Similarity=0.168 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEE
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSV 707 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v 707 (985)
...+++++.+++++|.+ ..+.+++|++|+..+++++ . .++++||+++..|+..... ++..|++++.+
T Consensus 114 ~~~~~l~~~lA~l~g~~-~~v~~~sG~~Ai~~al~~l---~-----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v 184 (445)
T 1qgn_A 114 PTTVVLEEKISALEGAE-STLLMASGMCASTVMLLAL---V-----PAGGHIVTTTDCYRKTRIFIETILPKMGITATVI 184 (445)
T ss_dssp HHHHHHHHHHHHHHTCS-EEEEESCHHHHHHHHHHHH---S-----CSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEE
T ss_pred hHHHHHHHHHHHHhCCC-cEEEeCCHHHHHHHHHHHH---h-----CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEe
Confidence 34668899999999987 4566778887665444432 1 3678999988777654332 45679999999
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCCE-EEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCc
Q 001989 708 GTDAKGNINIEELRKAAEANRDNL-STLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGAD 785 (985)
Q Consensus 708 ~~d~~g~iD~e~L~~~i~~~~~~t-~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~D 785 (985)
+.+ |+++|+++|+ ++| ++|++++| |++|.+. |+++|+++||++|+++++|+++..+. ...|..+|+|
T Consensus 185 ~~~-----d~~~l~~ai~---~~tv~lV~le~p~NptG~v~-dl~~I~~la~~~g~~livD~a~~~~~--~~~~~~~g~D 253 (445)
T 1qgn_A 185 DPA-----DVGALELALN---QKKVNLFFTESPTNPFLRCV-DIELVSKLCHEKGALVCIDGTFATPL--NQKALALGAD 253 (445)
T ss_dssp CSS-----CHHHHHHHHH---HSCEEEEEEESSCTTTCCCC-CHHHHHHHHHHTTCEEEEECTTTCTT--TCCTTTTTCS
T ss_pred CCC-----CHHHHHHHhc---cCCCCEEEEeCCCCCCCccc-CHHHHHHHHHHcCCEEEEECCCcccc--cCCccccCCE
Confidence 874 8999999998 688 99999998 4799998 89999999999999999999985332 3456678999
Q ss_pred EEEeCCcccccccCCCCCCc---eEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH
Q 001989 786 VCHLNLHKTFCIPHGGGGPG---MGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg---~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~ 862 (985)
+++.|+||+|+ |+| +|++++++++.+.+.... . ..+...+ +. .+|..+..
T Consensus 254 iv~~S~sK~~g------g~gd~~~G~l~~~~~l~~~l~~~~--~-----------~~g~~~~-----~~---~a~~~~~~ 306 (445)
T 1qgn_A 254 LVLHSATKFLG------GHNDVLAGCISGPLKLVSEIRNLH--H-----------ILGGALN-----PN---AAYLIIRG 306 (445)
T ss_dssp EEEECTTTTTT------CSSSCCCEEEEECHHHHHHHHHHH--H-----------HHCCCCC-----HH---HHHHHHHH
T ss_pred EEEECCccccc------ccccceEEEEEECHHHHHHHHHHH--H-----------HhCCCCC-----HH---HHHHHHHh
Confidence 99999999984 344 899999877654432110 0 0011111 11 12322232
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHhhcc
Q 001989 863 MGSKGLTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 863 lg~eGl~~~~~~~~~~a~~l~~~L~~g 889 (985)
+ +.+....++..++++++.+.|++.
T Consensus 307 l--~~l~~r~~~~~~~a~~l~~~L~~~ 331 (445)
T 1qgn_A 307 M--KTLHLRVQQQNSTALRMAEILEAH 331 (445)
T ss_dssp G--GGHHHHHHHHHHHHHHHHHHHHTC
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2 344555666778889999999874
No 188
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.77 E-value=8.8e-18 Score=193.37 Aligned_cols=304 Identities=16% Similarity=0.082 Sum_probs=191.4
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
+|..++.+++.+++.+.+|. +... ++.++|++|+..++.++. .++++|+++.+.|..+...++..|+++
T Consensus 75 ~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~ 146 (407)
T 2zc0_A 75 NGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLI--------DPGDVVITENPSYINTLLAFEQLGAKI 146 (407)
T ss_dssp TCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHTTTCEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhc--------CCCCEEEEeCCChHHHHHHHHHcCCEE
Confidence 34444444445555444484 3444 445555666654444331 367899998877766666677889999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHh---cCCCEEEEE-EEcC-CCccccccCHH---HHHHHHHHcCCEEEEEcccccccc-C
Q 001989 705 VSVGTDAKGNINIEELRKAAEA---NRDNLSTLM-VTYP-STHGVYEEGID---EICKIIHDNGGQVYMDGANMNAQV-G 775 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~---~~~~t~~Vv-v~~p-n~~G~i~~di~---eI~~la~~~galliVD~a~~~~~~-~ 775 (985)
+.+|+++++ +|+++|++++++ ..+++++|+ +++| |++|.+. |++ +|+++|+++|+++|+|+++..... +
T Consensus 147 ~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~ 224 (407)
T 2zc0_A 147 EGVPVDNDG-MRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTM-SMERRKALLEIASKYDLLIIEDTAYNFMRYEG 224 (407)
T ss_dssp EEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBSSC
T ss_pred EEcccCCCC-CCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 999987665 999999999972 113788874 5677 4699987 665 999999999999999999853211 1
Q ss_pred C--CCCCcc---CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhh
Q 001989 776 L--TSPGYI---GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 776 l--~~pg~~---g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~ 850 (985)
- .....+ +.++++.|++|+|+ | |.++|++++++++.+.+.... . ..+.+++ .
T Consensus 225 ~~~~~~~~~~~~~~~i~~~s~sK~~~-~----G~r~G~~~~~~~~~~~~~~~~------------~--~~~~~~~----~ 281 (407)
T 2zc0_A 225 GDIVPLKALDNEGRVIVAGTLSKVLG-T----GFRIGWIIAEGEILKKVLMQK------------Q--PIDFCAP----A 281 (407)
T ss_dssp SSCCCGGGGCSSCCEEEEEESTTTTC-T----TSCCEEEECCHHHHHHHHHHH------------T--TTTSSSC----H
T ss_pred CCCCChhhcCCCCCEEEEcccccccC-C----CcceEEEecCHHHHHHHHHHH------------H--hhcCCCC----H
Confidence 0 011112 34577888999985 3 456899998877655432110 0 0011111 1
Q ss_pred HHHHHHHHHHHHhc-H-HHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHH
Q 001989 851 LILPISYTYIAMMG-S-KGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL 927 (985)
Q Consensus 851 ~~~~~a~a~l~~lg-~-eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L 927 (985)
....++.+++.... . +.+.+..++..++++++.+.|++ ..++.+..+.+..+ +.+.++ .+.+..++.++|
T Consensus 282 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~l~~~l 354 (407)
T 2zc0_A 282 ISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMF--VMFFLP-----EGADGISFANEL 354 (407)
T ss_dssp HHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSBSSE--EEEECS-----TTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCCcEE--EEEEcC-----CCCCHHHHHHHH
Confidence 22222333443221 2 34555566677888899999976 22222212222222 345654 246788999999
Q ss_pred HHC-CCccCCCC-C-C---CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 928 MDY-GFHGPTMS-W-P---VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 928 ~~~-Gi~~~~~~-~-p---~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.++ ||.+.... + + ..+++||+++.. |++||++ +++.|+++++++
T Consensus 355 ~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~--~~~~l~~~l~~~ 404 (407)
T 2zc0_A 355 MEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPI--GIKKLAKLYKEK 404 (407)
T ss_dssp HHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHH--HHHHHHHHHHHH
T ss_pred HHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHH--HHHHHHHHHHHH
Confidence 998 99875422 2 1 247899999877 8999999 788888888764
No 189
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.77 E-value=6.5e-18 Score=194.17 Aligned_cols=277 Identities=16% Similarity=0.152 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH----HHCCcEEEEEc
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA----AMCGMKIVSVG 708 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a----~~~G~~vv~v~ 708 (985)
...++++.+++++|.+. .+++++|++|+.++++++. .++++||++...|+...... +..|++++.++
T Consensus 67 ~~~~l~~~la~~~g~~~-~~~~~sGt~A~~~al~~~~--------~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 137 (392)
T 3qhx_A 67 TRTALEAALAAVEDAAF-GRAFSSGMAAADCALRAML--------RPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVA 137 (392)
T ss_dssp HHHHHHHHHHHHTTCSE-EEEESSHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEEC
T ss_pred HHHHHHHHHHHHhCCCc-EEEECCHHHHHHHHHHHHh--------CCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeC
Confidence 35688999999999874 4666788887765555431 36789999888776544433 56799999999
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEE
Q 001989 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~ 787 (985)
++ |+++|+++++ +++++|++++| |++|.+. |+++|+++|+++|+++|+|+++... ....|..+++|++
T Consensus 138 ~~-----d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~la~~~g~~li~D~~~~~~--~~~~~~~~~~di~ 206 (392)
T 3qhx_A 138 LA-----DLDAVRAAIR---PTTRLIWVETPTNPLLSIA-DIAGIAQLGADSSAKVLVDNTFASP--ALQQPLSLGADVV 206 (392)
T ss_dssp TT-----CHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHTCEEEEECTTTCT--TTCCGGGGTCSEE
T ss_pred CC-----CHHHHHHhhC---CCCeEEEEECCCCCCcEEe-cHHHHHHHHHHcCCEEEEECCCccc--ccCChHHhCCcEE
Confidence 75 8999999997 89999999998 4799998 8999999999999999999998532 2345667899999
Q ss_pred EeCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
+.|+||+++.+ |++.+|++++++ ++.+.+..... .++... .+.. +|+.+..+ +
T Consensus 207 ~~S~sK~lg~~---g~~~~G~v~~~~~~~~~~l~~~~~-------------~~g~~~-----~~~~---~~~~~~~l--~ 260 (392)
T 3qhx_A 207 LHSTTKYIGGH---SDVVGGALVTNDEELDQSFAFLQN-------------GAGAVP-----GPFD---AYLTMRGL--K 260 (392)
T ss_dssp EEETTTTTTCS---SCCCCEEEEESCHHHHHHHHHHHH-------------HHCCCC-----CHHH---HHHHHHHH--T
T ss_pred EEcCccccCCC---CCceEEEEEECcHHHHHHHHHHHH-------------hcCCCC-----CHHH---HHHHHhhh--h
Confidence 99999998521 224589998874 55443321100 001111 1111 22222322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCe---eecCCCC-c-----------eeeEEEEEecCccccCC-CCHHHHHHHHHHC
Q 001989 867 GLTEASKIAILNANYMAKRLEKHYPI---LFRGVNG-T-----------VAHEFIVDLRGLKNTAG-IEPEDVAKRLMDY 930 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~g~~l---~~~~~~~-~-----------~~~~~iv~~~~~~~~~g-~~~~~v~~~L~~~ 930 (985)
.+....++..++++++.+.|++...+ .+++-.. + ....+.+.+++ + ...+.+.+.|...
T Consensus 261 ~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~-----~~~~~~~~~~~l~~~ 335 (392)
T 3qhx_A 261 TLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRA-----GRTAAEQLCAKTNIF 335 (392)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT-----CHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCC-----cHHHHHHHHHhCCCc
Confidence 34555667788888999988864332 2222100 0 01124455541 1 2345666666655
Q ss_pred CCccCC--C----CCC---------------CCCEEEEeccCCCCHHHHHH
Q 001989 931 GFHGPT--M----SWP---------------VPGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 931 Gi~~~~--~----~~p---------------~~~~lris~t~~~t~eeId~ 960 (985)
|+.++. . ..| .++.||+|++..+++++|+.
T Consensus 336 ~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~ 386 (392)
T 3qhx_A 336 ILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDD 386 (392)
T ss_dssp EECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHH
T ss_pred eECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHH
Confidence 654331 0 011 14789999999999999988
No 190
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.77 E-value=4.3e-18 Score=197.61 Aligned_cols=307 Identities=11% Similarity=0.046 Sum_probs=193.6
Q ss_pred hhHHHHHHHHHHHHHHHhCC---Cccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITGF---DSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~---~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+++.+++.+.+|. +...+.. ++|++++..++. .+. .++++|+++.+.|..+...++..|++
T Consensus 85 ~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~---~l~-----~~gd~Vl~~~p~y~~~~~~~~~~g~~ 156 (425)
T 1vp4_A 85 EGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGK---LFL-----DDESYCVLDDPAYLGAINAFRQYLAN 156 (425)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHH---HHC-----CTTCEEEEEESCCHHHHHHHHTTTCE
T ss_pred CCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHH---HhC-----CCCCEEEEeCCCcHHHHHHHHHcCCE
Confidence 34444455555555555484 4444444 444555544433 321 36789999888776666667788999
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhc-----CCCEEEEE-EEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-
Q 001989 704 IVSVGTDAKGNINIEELRKAAEAN-----RDNLSTLM-VTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ- 773 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~-----~~~t~~Vv-v~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~- 773 (985)
++.+|+++++ +|+++|++++++. .+++++|+ +++| |++|.+.+ ++++|.++|+++|+++++|+++....
T Consensus 157 ~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~ 235 (425)
T 1vp4_A 157 FVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRY 235 (425)
T ss_dssp EEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBC
T ss_pred EEEeccCCCC-CCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccC
Confidence 9999987665 8999999999731 12788884 6777 56898862 47899999999999999999985311
Q ss_pred cCC--CCC---CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 774 VGL--TSP---GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 774 ~~l--~~p---g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
.+- ... +..+.++++.|++|+|+ | |.++|++++++++.+.+...... . ..+.
T Consensus 236 ~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~----G~r~G~~~~~~~~~~~l~~~~~~------------~--~~~~---- 292 (425)
T 1vp4_A 236 EGETVDPIFKIGGPERVVLLNTFSKVLA-P----GLRIGMVAGSKEFIRKIVQAKQS------------A--DLCS---- 292 (425)
T ss_dssp SSCCCCCHHHHHCTTTEEEEEESTTTTC-G----GGCEEEEECCHHHHHHHHHHHHH------------H--HSSC----
T ss_pred CCCCCcCHHHhCCCCCEEEEeccccccc-c----ccceEEEeeCHHHHHHHHHHhhh------------h--cCCC----
Confidence 110 011 11245788899999984 3 55689999987765543211000 0 0011
Q ss_pred hhHHHHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHhhcc-C---CeeecCCCCceeeEEEEEecCccccCCCCHHHH
Q 001989 849 SALILPISYTYIAMMG-SKGLTEASKIAILNANYMAKRLEKH-Y---PILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDV 923 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg-~eGl~~~~~~~~~~a~~l~~~L~~g-~---~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v 923 (985)
+.....++.++|.... .+.+++..++..++++++.+.|++. . .+.+..+.+..+ +.+.++ .+.+..++
T Consensus 293 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~--~~~~~~-----~~~~~~~l 365 (425)
T 1vp4_A 293 PAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLF--IWLTLP-----EGFDTWEM 365 (425)
T ss_dssp CHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSE--EEEECC-----TTCCTTTT
T ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEE--EEEEcC-----CCCCHHHH
Confidence 1122223334444321 2345566666778889999998763 1 232222222222 345554 13456788
Q ss_pred HHHHHHCCCccCCC-CCC----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 924 AKRLMDYGFHGPTM-SWP----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 924 ~~~L~~~Gi~~~~~-~~p----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.+.|.++||.+... .+. ..+++||+++.. +++||++ +++.|+++++++..
T Consensus 366 ~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~e~i~~--~l~~l~~~l~~~~~ 420 (425)
T 1vp4_A 366 FEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLP-PDEKIVE--GIKRLREVVLEYGK 420 (425)
T ss_dssp HHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSS-CHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCC-CHHHHHH--HHHHHHHHHHHHHh
Confidence 99999999987532 221 247899999875 8999999 88899988877654
No 191
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.77 E-value=8.9e-17 Score=188.09 Aligned_cols=311 Identities=14% Similarity=0.168 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC---------
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG--------- 701 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G--------- 701 (985)
+...+++++++++++.+...++.+||++|+++++++++.|....|..++++||+ ...+||.........|
T Consensus 91 ~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 170 (452)
T 3n5m_A 91 EPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYE 170 (452)
T ss_dssp HHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTC
T ss_pred HHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccC
Confidence 345688899999998665466778999999999888887654343335677877 5567887655543222
Q ss_pred ---cEEEEEcCCCCC---CCC---------HHHHHHHHH-hcCCCEEEEEEEcC--CCccccccC----HHHHHHHHHHc
Q 001989 702 ---MKIVSVGTDAKG---NIN---------IEELRKAAE-ANRDNLSTLMVTYP--STHGVYEEG----IDEICKIIHDN 759 (985)
Q Consensus 702 ---~~vv~v~~d~~g---~iD---------~e~L~~~i~-~~~~~t~~Vvv~~p--n~~G~i~~d----i~eI~~la~~~ 759 (985)
..+..++..... ..| +++|+++++ ++++++++|+++.+ | +|.+. + +++|.++|+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~-~~~~~l~~l~~l~~~~ 248 (452)
T 3n5m_A 171 PFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILM-APQDYMKAVHETCQKH 248 (452)
T ss_dssp CCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBC-CCTTHHHHHHHHHHHH
T ss_pred CCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeee-CCHHHHHHHHHHHHHc
Confidence 134455542111 123 899999997 33357888888876 7 88765 4 99999999999
Q ss_pred CCEEEEEccccccccCCCCC---C--ccCCcEEEeCCcccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCC
Q 001989 760 GGQVYMDGANMNAQVGLTSP---G--YIGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAP 833 (985)
Q Consensus 760 galliVD~a~~~~~~~l~~p---g--~~g~Di~~~s~hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~ 833 (985)
|++||+|++|. +++-.... . ...+|++++| |+++ +| .++|++++++++.+.+......
T Consensus 249 ~~llI~DEv~~-g~g~~g~~~~~~~~~~~~di~t~s--K~l~-----~G~~~ig~~~~~~~i~~~~~~~~~~-------- 312 (452)
T 3n5m_A 249 GALLISDEVIC-GFGRTGKAFGFMNYDVKPDIITMA--KGIT-----SAYLPLSATAVKREIYEAFKGKGEY-------- 312 (452)
T ss_dssp TCEEEEECTTT-TTTTTSSSSGGGGTTCCCSEEEEC--GGGG-----TTSSCCEEEEEEHHHHGGGCSSSTT--------
T ss_pred CCEEEEecchh-CCCcccccchhhhcCCCCCEEeec--cccc-----CCCcceEEEEECHHHHHHHhhccCC--------
Confidence 99999999874 22111111 1 1236888764 8874 36 6789999998877665320000
Q ss_pred CCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CC-ee-ecCCCCceeeEEEEE
Q 001989 834 EKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YP-IL-FRGVNGTVAHEFIVD 908 (985)
Q Consensus 834 ~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~-l~-~~~~~~~~~~~~iv~ 908 (985)
+.... .+++.++++.++++.+.+..+..+++ .++..++.++++++|++. +. +. ..+ .+..+ .+.
T Consensus 313 -~~~~~---~~t~~~~~~~~aaa~aal~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~~---~i~ 381 (452)
T 3n5m_A 313 -EFFRH---INTFGGNPAACALALKNLEIIENENL---IERSAQMGSLLLEQLKEEIGEHPLVGDIRG-KGLLV---GIE 381 (452)
T ss_dssp -CSCCC---CCSSTTCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHTTCTTEEEEEE-SSSCE---EEE
T ss_pred -CCccc---cCCCCCCHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHHHHhcCCCeEEEEE-EEEEE---EEE
Confidence 00000 01122345555666666776654443 345566777777777642 22 11 111 12222 222
Q ss_pred ecCccccC-CC---CHHHHHHHHHHCCCccCCCCCC---CCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 909 LRGLKNTA-GI---EPEDVAKRLMDYGFHGPTMSWP---VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 909 ~~~~~~~~-g~---~~~~v~~~L~~~Gi~~~~~~~p---~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+..-.... .. ...++.+.|.++|+.+.....+ ..+.+||+|+..+|++||++ +++.|++++++
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~--~l~~l~~~l~~ 451 (452)
T 3n5m_A 382 LVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAF--VIGTLKTAMER 451 (452)
T ss_dssp EEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHH--HHHHHHHHHTT
T ss_pred EecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHH--HHHHHHHHHHh
Confidence 21000000 00 1357889999999987654321 24899999999999999999 77888887754
No 192
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.77 E-value=2e-17 Score=190.10 Aligned_cols=274 Identities=16% Similarity=0.145 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch--
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK-- 289 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~-- 289 (985)
...++++.+|+++|.+ ++.++++||+++++++.++ . ++||+|++++..|+++...+..+++..|++++.++.+
T Consensus 67 ~~~~l~~~la~~~g~~--~~~~~~sGt~A~~~al~~~-~--~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~ 141 (392)
T 3qhx_A 67 TRTALEAALAAVEDAA--FGRAFSSGMAAADCALRAM-L--RPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALADL 141 (392)
T ss_dssp HHHHHHHHHHHHTTCS--EEEEESSHHHHHHHHHHHH-C--CTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTTCH
T ss_pred HHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHH-h--CCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCCCH
Confidence 3567889999999987 4778899998888777654 2 3889999999999999988877667789999999764
Q ss_pred -hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCC
Q 001989 290 -DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 290 -~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
++++ ++++|++|++.+| |.+|.+.|+++|+++||++|+++++| +.++.+....+.++|+|+++.|. |.++++
T Consensus 142 ~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D-~~~~~~~~~~~~~~~~di~~~S~sK~lg~~--- 217 (392)
T 3qhx_A 142 DAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVD-NTFASPALQQPLSLGADVVLHSTTKYIGGH--- 217 (392)
T ss_dssp HHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEE-CTTTCTTTCCGGGGTCSEEEEETTTTTTCS---
T ss_pred HHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEE-CCCcccccCChHHhCCcEEEEcCccccCCC---
Confidence 5556 8889999999998 78999999999999999999999995 45555666667789999999998 766532
Q ss_pred CCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHH
Q 001989 366 GGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLK 444 (985)
Q Consensus 366 GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~ 444 (985)
|++-+|+++++ +++.+.+.. .++..+. .. .++.+. + ...+.+.+.
T Consensus 218 g~~~~G~v~~~~~~~~~~l~~-------------------------~~~~~g~--~~--~~~~~~---~--~~~~l~~l~ 263 (392)
T 3qhx_A 218 SDVVGGALVTNDEELDQSFAF-------------------------LQNGAGA--VP--GPFDAY---L--TMRGLKTLV 263 (392)
T ss_dssp SCCCCEEEEESCHHHHHHHHH-------------------------HHHHHCC--CC--CHHHHH---H--HHHHHTTHH
T ss_pred CCceEEEEEECcHHHHHHHHH-------------------------HHHhcCC--CC--CHHHHH---H--HHhhhhHHH
Confidence 22336888887 466554410 0000010 00 111111 1 111123356
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEc-CC-----CC-----------cceEEEecCC----HHHHHHHHHHcCceee---
Q 001989 445 TIAQRVHGLAGTFALGLKKLGTVEVQ-GL-----PF-----------FDTVKVKCAD----AHAIASAAYKIEMNLR--- 500 (985)
Q Consensus 445 ~i~~~~~~~a~~l~~~L~~~g~~~~~-~~-----~~-----------~~~~~~~~~~----~~~v~~~L~~~GI~~~--- 500 (985)
...++..+++.++++.|++...+..+ .+ +. ...+.|.+++ +..+.+.|...|+.++
T Consensus 264 ~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~ 343 (392)
T 3qhx_A 264 LRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLGS 343 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCCCC
Confidence 66777888999999999987435432 11 11 2246676654 4555555554554321
Q ss_pred -------e--------------ecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 501 -------V--------------VDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 501 -------~--------------~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
. +.++.||+|++..+++++|+.|.++|.
T Consensus 344 ~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al~ 392 (392)
T 3qhx_A 344 VESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQALG 392 (392)
T ss_dssp SSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred CCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHhC
Confidence 0 124679999999999999999998873
No 193
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.77 E-value=8.6e-18 Score=195.62 Aligned_cols=301 Identities=13% Similarity=0.096 Sum_probs=186.7
Q ss_pred HHHHHHHHHhC--------CCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHH-HCCcEEE
Q 001989 636 NLGEWLCTITG--------FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA-MCGMKIV 705 (985)
Q Consensus 636 e~~~~la~l~G--------~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~-~~G~~vv 705 (985)
++++.++++++ .+... +++++|++|+..++.++. .++++|+++.+.|+.+...+. ..|++++
T Consensus 90 ~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~~g~~~~ 161 (435)
T 3piu_A 90 AFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA--------DPGEAVLIPTPYYPGFDRDLKWRTGVEIV 161 (435)
T ss_dssp HHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHTTTTTCCEEE
T ss_pred HHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhc--------CCCCeEEECCCccccHHHHHHHhcCCEEE
Confidence 44555555554 34433 555666777755544432 367899998888887776666 7899999
Q ss_pred EEcCCCC--CCCCHHHHHHHHHhc---CCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEcccccc-ccCC
Q 001989 706 SVGTDAK--GNINIEELRKAAEAN---RDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNA-QVGL 776 (985)
Q Consensus 706 ~v~~d~~--g~iD~e~L~~~i~~~---~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~-~~~l 776 (985)
.++++++ +.+|+++|+++++++ ..++++|++++|+ ++|.+. .++++|.++|+++|+++++|++|... .++-
T Consensus 162 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~ 241 (435)
T 3piu_A 162 PIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP 241 (435)
T ss_dssp EEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS
T ss_pred EeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC
Confidence 9998753 568999999999731 2389999999994 689885 14789999999999999999998421 1111
Q ss_pred --CCC----CccCC---------cEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCC
Q 001989 777 --TSP----GYIGA---------DVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLG 840 (985)
Q Consensus 777 --~~p----g~~g~---------Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~ 840 (985)
... .+.++ ++++.++||+|+. +|.++|+++++ +.+...+... . .+.
T Consensus 242 ~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~--~------------~~~ 303 (435)
T 3piu_A 242 SFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGL----PGFRVGAIYSNDDMVVAAATKM--S------------SFG 303 (435)
T ss_dssp CCCCHHHHHHC-------CGGGGEEEEEESSSSSCC----GGGCEEEEEESCHHHHHHHHHH--G------------GGS
T ss_pred CCcCHHHhccccccccccCCCCCEEEEEeeecccCC----CceeEEEEEeCCHHHHHHHHHH--h------------hcC
Confidence 000 01112 2788899999854 35678999985 4443332100 0 001
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhc--HHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCC
Q 001989 841 TIAAAPWGSALILPISYTYIAMMG--SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAG 917 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg--~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g 917 (985)
..+ .....++.+++.... .+.+.+..++..++++++.+.|++ ++.+. .+.+..+ +.+.++.......
T Consensus 304 ~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~g~~--~~~~l~~~~~~~~ 373 (435)
T 3piu_A 304 LVS------SQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCL--NGNAGLF--CWVDMRHLLRSNT 373 (435)
T ss_dssp CCC------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEC--CCCSSSE--EEEECGGGSSSSS
T ss_pred CCC------HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--CCCeeEE--EEEEcccccccCC
Confidence 111 111112222332211 224455566778888999999986 44432 2222222 3455541100000
Q ss_pred -CCHHHHHHHHHHC-CCccCCCC-C--CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 918 -IEPEDVAKRLMDY-GFHGPTMS-W--PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 918 -~~~~~v~~~L~~~-Gi~~~~~~-~--p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+..++.++|.++ ||.+.... + ..++++||+++.. |++||++ +++.|++++++++
T Consensus 374 ~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~-~~e~i~~--~l~~l~~~l~~~~ 433 (435)
T 3piu_A 374 FEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANL-PERTLDL--AMQRLKAFVGEYY 433 (435)
T ss_dssp HHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSS-CHHHHHH--HHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCC-CHHHHHH--HHHHHHHHHHHHh
Confidence 0345788888877 99875321 2 2358999999766 9999999 8889999887764
No 194
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.77 E-value=3.9e-17 Score=187.45 Aligned_cols=303 Identities=16% Similarity=0.096 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHHhC--CCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 632 EMFNNLGEWLCTITG--FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 632 ~~~~e~~~~la~l~G--~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
++.+++.+++.+.+| .+... ++.++|++|+..++.++. .++++|+++.+.|..+...++..|++++.+|
T Consensus 70 ~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~ 141 (399)
T 1c7n_A 70 EYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT--------KPGDGVIIITPVYYPFFMAIKNQERKIIECE 141 (399)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEECSSCCTHHHHHHHTTTCEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhc--------CCCCEEEEcCCCcHhHHHHHHHcCCEEEecc
Confidence 444555556666668 44433 455666666654444331 3678999988877777777788899999998
Q ss_pred CC-CCC--CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccc-cC--CCC
Q 001989 709 TD-AKG--NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQ-VG--LTS 778 (985)
Q Consensus 709 ~d-~~g--~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~-~~--l~~ 778 (985)
.+ ++| .+|+++|++++++ +++++|++++| |++|.+. + +++|+++|+++|+++++|++|.... .+ ...
T Consensus 142 ~~~~~g~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~ 218 (399)
T 1c7n_A 142 LLEKDGYYTIDFQKLEKLSKD--KNNKALLFCSPHNPVGRVW-KKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTV 218 (399)
T ss_dssp CEEETTEEECCHHHHHHHHTC--TTEEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCC
T ss_pred cccCCCCEEEcHHHHHHHhcc--CCCcEEEEcCCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCccc
Confidence 85 333 5999999999962 57899999998 4699986 5 9999999999999999999985211 11 111
Q ss_pred CCc-----cCCcEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 779 PGY-----IGADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 779 pg~-----~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
... .+.++++.|++|+|+.| |.++|+++++ +++.+.+...... ..+++. +...
T Consensus 219 ~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~l~~~~~~-----------~~~~~~------~~~~ 277 (399)
T 1c7n_A 219 FQSIDEQLADKTITFTAPSKTFNIA----GMGMSNIIIKNPDIRERFTKSRDA-----------TSGMPF------TTLG 277 (399)
T ss_dssp GGGSCHHHHTTEEEEECSHHHHTCG----GGCCEEEECCCHHHHHHHHHHHHH-----------TTCCCC------CHHH
T ss_pred HHHcCccccCcEEEEEeChhhcccc----chheEEEEECCHHHHHHHHHHHhh-----------cccCCC------CHHH
Confidence 111 24568889999998543 5668999987 4455443211000 001111 1122
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HC
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DY 930 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~ 930 (985)
..++.+.+.. +.+.+.+..++..++++++.+.|++ ...+....+.+..+ +.++++. .+.+..++.+.|. ++
T Consensus 278 ~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~l~~~~ 350 (399)
T 1c7n_A 278 YKACEICYKE-CGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYL--QWIDFRA----LKMDHKAMEEFMIHKA 350 (399)
T ss_dssp HHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSE--EEEECGG----GCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCCceEE--EEEEccc----CCCCHHHHHHHHHHhC
Confidence 2223334442 3556677777788889999999976 22332222222222 2356541 1356888999997 68
Q ss_pred CCccCCCC-CC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccC
Q 001989 931 GFHGPTMS-WP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 931 Gi~~~~~~-~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~ 977 (985)
||.+.... +. .++++||+++.. +++|++ +++.|++++++++.+
T Consensus 351 gi~v~~g~~~~~~~~~~iRis~~~~--~~~l~~--~l~~l~~~l~~~~~~ 396 (399)
T 1c7n_A 351 QIFFDEGYIFGDGGIGFERINLAAP--SSVIQE--SLERLNKALKDLKNR 396 (399)
T ss_dssp CCCCEEGGGGCGGGTTEEEEECCSC--HHHHHH--HHHHHHHHHHHHC--
T ss_pred CEEEeCccccCCCCCCeEEEEeccC--HHHHHH--HHHHHHHHHHHHHhc
Confidence 99875322 21 247999999864 789999 788999998887653
No 195
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.77 E-value=1.5e-17 Score=191.56 Aligned_cols=284 Identities=15% Similarity=0.152 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH----HHCCcEEEEE
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA----AMCGMKIVSV 707 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a----~~~G~~vv~v 707 (985)
....++++.+++++|.+ ..+.+++|++|+..++.++. .++++|+++...|+.+.... ...|++++.+
T Consensus 65 ~~~~~l~~~la~~~g~~-~~i~~~sG~~a~~~~l~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~ 135 (398)
T 1gc0_A 65 PTLNLLEARMASLEGGE-AGLALASGMGAITSTLWTLL--------RPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHV 135 (398)
T ss_dssp HHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEE
T ss_pred hHHHHHHHHHHHHhCCC-cEEEECCHHHHHHHHHHHHh--------cCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEE
Confidence 34678899999999987 45667788877755544431 36789999988887765543 5679999999
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcE
Q 001989 708 GTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADV 786 (985)
Q Consensus 708 ~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di 786 (985)
+.+ |+++|+++++ +++++|++++|+ ++|.+. |+++|+++|+++|+++|+|+++..+. +..+..+++|+
T Consensus 136 ~~~-----d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~~~~~~~--~~~~~~~~~d~ 204 (398)
T 1gc0_A 136 DMA-----DLQALEAAMT---PATRVIYFESPANPNMHMA-DIAGVAKIARKHGATVVVDNTYCTPY--LQRPLELGADL 204 (398)
T ss_dssp CTT-----CHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHGGGTCEEEEECTTTHHH--HCCGGGGTCSE
T ss_pred CCC-----CHHHHHHhcC---CCCeEEEEECCCCCCcccc-cHHHHHHHHHHcCCEEEEECCCcccc--cCCchhhCceE
Confidence 874 8999999997 789999999985 699998 89999999999999999999985332 23455678999
Q ss_pred EEeCCcccccccCCCCCCceEEEEEcccccC-cCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP-FLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~-~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
++.|+||+|+.| |++-+|+++++++... .+.....+. .+... ++.. +|+.+..+
T Consensus 205 ~~~S~sK~~~~~---~~~~~G~l~~~~~~~~~~~~~~~~~~------------~~~~~-----~~~~---~~~~~~~l-- 259 (398)
T 1gc0_A 205 VVHSATKYLSGH---GDITAGIVVGSQALVDRIRLQGLKDM------------TGAVL-----SPHD---AALLMRGI-- 259 (398)
T ss_dssp EEEETTTTTTCS---SSCCCEEEEECHHHHHHHHHTHHHHH------------TCCCC-----CHHH---HHHHHHHH--
T ss_pred EEECCccccCCC---CCCeEEEEEEChHHHHHHHHHHhhcc------------CCCCC-----CHHH---HHHHHhcc--
Confidence 999999998533 2223589998865432 221110000 01111 1111 12222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCe---eecC-----------CC-CceeeEEEEEecCccccCCCCHHHHHHHHHHC
Q 001989 866 KGLTEASKIAILNANYMAKRLEKHYPI---LFRG-----------VN-GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY 930 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~g~~l---~~~~-----------~~-~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~ 930 (985)
+.+....++..++++++.+.|++...+ .+++ +. ....+.+.+.++ + ..+++.+.|.+.
T Consensus 260 ~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~------~-~~~~~~~~l~~~ 332 (398)
T 1gc0_A 260 KTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELK------G-GIGAGRRFMNAL 332 (398)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEET------T-HHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEEC------C-CHHHHHHHHHhC
Confidence 234455566777888888888762111 1110 00 001122344443 1 234566677777
Q ss_pred CCccCCCC------------------CC--------C-CCEEEEeccCCCCHHHHHHHHccCChhH
Q 001989 931 GFHGPTMS------------------WP--------V-PGTLMIEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 931 Gi~~~~~~------------------~p--------~-~~~lris~t~~~t~eeId~~~~~~~l~~ 969 (985)
|+.....+ .| + ++.+|+|+...+++++|+. +.++|++
T Consensus 333 ~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~--l~~al~~ 396 (398)
T 1gc0_A 333 QLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLAD--VQQALKA 396 (398)
T ss_dssp SSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHH--HHHHHHH
T ss_pred CCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHH--HHHHHHh
Confidence 77642211 01 1 4799999999999999999 5555554
No 196
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.77 E-value=3.2e-17 Score=189.22 Aligned_cols=161 Identities=19% Similarity=0.176 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEEEEEc
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVG 708 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~vv~v~ 708 (985)
..+++++.+++++|.+ ..+.+++|++|+..++.++. .++++|+++...|+.+.. .++..|++++.+|
T Consensus 63 ~~~~l~~~ia~~~g~~-~~i~~~~g~~ai~~~~~~l~--------~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 133 (404)
T 1e5e_A 63 TVSNLEGKIAFLEKTE-ACVATSSGMGAIAATVLTIL--------KAGDHLISDECLYGCTHALFEHALTKFGIQVDFIN 133 (404)
T ss_dssp HHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHC--------CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHhCCC-cEEEeCChHHHHHHHHHHHh--------CCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEEC
Confidence 3567899999999987 44666778776644444331 467899999988877666 5677899999999
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHH-cCCEEEEEccccccccCCCCCCccCCcE
Q 001989 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHD-NGGQVYMDGANMNAQVGLTSPGYIGADV 786 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~-~galliVD~a~~~~~~~l~~pg~~g~Di 786 (985)
.+ |+++|+++++ ++|++|++++| |++|.+. |+++|+++|++ +|+++++|+++.... +..|..++.|+
T Consensus 134 ~~-----d~~~l~~~i~---~~t~~v~l~~p~NptG~v~-~l~~i~~la~~~~~~~li~De~~~~~~--~~~~~~~~~di 202 (404)
T 1e5e_A 134 TA-----IPGEVKKHMK---PNTKIVYFETPANPTLKII-DMERVCKDAHSQEGVLVIADNTFCSPM--ITNPVDFGVDV 202 (404)
T ss_dssp TT-----STTHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHTSTTCEEEEECTTTCTT--TCCGGGGTCSE
T ss_pred CC-----CHHHHHHhcC---CCCcEEEEECCCCCCCccc-CHHHHHHHHHhhcCCEEEEECCCchhh--hCCccccCCEE
Confidence 75 8899999997 78999999999 5799998 89999999999 999999999985322 22455678999
Q ss_pred EEeCCcccccccCCCCCCc-eEEEEEcccccC
Q 001989 787 CHLNLHKTFCIPHGGGGPG-MGPIGVKKHLAP 817 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg-~G~i~~~~~l~~ 817 (985)
++.|+||+|+.| |.. +|++++++++..
T Consensus 203 ~~~S~sK~~~~~----g~ri~G~~~~~~~~~~ 230 (404)
T 1e5e_A 203 VVHSATKYINGH----TDVVAGLICGKADLLQ 230 (404)
T ss_dssp EEEETTTTTTCS----SCCCCEEEEECHHHHH
T ss_pred EEEcCccccCCC----CCCeEEEEEECHHHHH
Confidence 999999999543 223 499999876654
No 197
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.76 E-value=1.2e-17 Score=193.63 Aligned_cols=304 Identities=15% Similarity=0.129 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-C
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA-K 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~-~ 712 (985)
..++++.+++++|.+. .++.++|++|+..++.++. ++++|++++..|..+...+...|++++.+++++ +
T Consensus 54 ~~~l~~~la~~~~~~~-v~~~~ggt~al~~~l~~l~---------~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~~ 123 (424)
T 2po3_A 54 VREFEERVAGLAGVRH-AVATCNATAGLQLLAHAAG---------LTGEVIMPSMTFAATPHALRWIGLTPVFADIDPDT 123 (424)
T ss_dssp HHHHHHHHHHHHTSSE-EEEESCHHHHHHHHHHHHT---------CCSEEEEESSSCTHHHHHHHHTTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHhCCCe-EEEeCCHHHHHHHHHHHcC---------CCCEEEECCCccHHHHHHHHHcCCEEEEEecCCCc
Confidence 4578889999999864 3566778877755554431 458999999888888777888999999999986 6
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-CCCccCCcEEEeCC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-SPGYIGADVCHLNL 791 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-~pg~~g~Di~~~s~ 791 (985)
+.+|+++|+++++ +++++|++++ ++|... |+++|.++|+++|+++|+|++|..+...-. ..+.+ .|+++.|+
T Consensus 124 ~~~d~~~l~~~i~---~~~~~v~~~~--~tG~~~-~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~~-~di~~~S~ 196 (424)
T 2po3_A 124 GNLDPDQVAAAVT---PRTSAVVGVH--LWGRPC-AADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSL-GDAEVFSF 196 (424)
T ss_dssp SSBCHHHHGGGCC---TTEEEEEEEC--GGGCCC-CHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SSEEEEEC
T ss_pred CCcCHHHHHHhhC---cCCcEEEEEC--CCCCcC-CHHHHHHHHHHcCCEEEEECccccCCeECCeecccc-cCEEEEeC
Confidence 7899999999987 6899999876 579887 899999999999999999999864332101 11222 58999998
Q ss_pred cccccccCCCCCCceEEEEEc-ccccCcCCCCc-cccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHH
Q 001989 792 HKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHP-VVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 792 hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~-~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~ 869 (985)
||+.+. +|+++|+++++ +++.+.+.... .+.... +.. ......... ....++.+ +. ..++++
T Consensus 197 sk~K~l----~~~~~G~~v~~~~~l~~~l~~~~~~~~~~~---~~~--~~~g~~~~~--~~~~aa~~---l~--~~~~~~ 260 (424)
T 2po3_A 197 HATKAV----NAFEGGAVVTDDADLAARIRALHNFGFDLP---GGS--PAGGTNAKM--SEAAAAMG---LT--SLDAFP 260 (424)
T ss_dssp CTTSSS----CCSSCEEEEESCHHHHHHHHHHHBTTTTCT---TCC--TTCCCBCCC--CHHHHHHH---HH--HHHHHH
T ss_pred CCCCCc----cCCCCeEEEeCCHHHHHHHHHHHhcCcccc---ccc--cccCcCCCc--CHHHHHHH---HH--HHHHHH
Confidence 844322 34678899988 55543321100 000000 000 000000000 11111212 21 234566
Q ss_pred HHHHHHHHHHHHHHHHhhccCCeeecC-CCC--ceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC-CC----
Q 001989 870 EASKIAILNANYMAKRLEKHYPILFRG-VNG--TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW-PV---- 941 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~g~~l~~~~-~~~--~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~-p~---- 941 (985)
+..++..++++++.+.|++..++.+.. +.+ ..++.+.+.++.. ..+.+..++.+.|.++||.+..... +.
T Consensus 261 ~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~ 338 (424)
T 2po3_A 261 EVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEA--TTGIHRDLVMEVLKAEGVHTRAYFSPGCHELE 338 (424)
T ss_dssp HHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHH--HHSSCHHHHHHHHHHTTEECBCTTCSCGGGST
T ss_pred HHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCc--cchhhHHHHHHHHHHCCCceecccCCccccch
Confidence 667777888889999997622332222 111 1122343544300 0035688999999999998754211 10
Q ss_pred -----------------CCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 942 -----------------PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 942 -----------------~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
...++++++..+|++||++ +++.|++++++.
T Consensus 339 ~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~--~~~~L~~~~~~~ 386 (424)
T 2po3_A 339 PYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRR--VADLLRLCATRG 386 (424)
T ss_dssp TTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHH--HHHHHHHHHHHH
T ss_pred hhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHH--HHHHHHHHHhhh
Confidence 1127888789999999999 778888887654
No 198
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.76 E-value=5.3e-18 Score=192.89 Aligned_cols=295 Identities=13% Similarity=0.105 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHHHhCC--Cccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 632 EMFNNLGEWLCTITGF--DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~--~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
++.+.+.+++.+.+|. +... ++.++|++++..++.++. .++++|+++.+.|..+...++..|++++.+|
T Consensus 62 ~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~ 133 (377)
T 3fdb_A 62 LLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFT--------PAQSKVIVPTPAYPPFFHLLSATQREGIFID 133 (377)
T ss_dssp CHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS--------CTTCCEEEEESCCTHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhc--------CCCCEEEEcCCCcHhHHHHHHHcCCEEEEcc
Confidence 3444555555555553 3433 455667776654444331 3678899988878777777888899999999
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cCCCCCCc---
Q 001989 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VGLTSPGY--- 781 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~l~~pg~--- 781 (985)
++++ +|+++|+++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++++|++|.... .+-..+..
T Consensus 134 ~~~~--~d~~~l~~~l~---~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 208 (377)
T 3fdb_A 134 ATGG--INLHDVEKGFQ---AGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVS 208 (377)
T ss_dssp CTTS--CCHHHHHHHHH---TTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSC
T ss_pred CCCC--CCHHHHHHHhc---cCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHH
Confidence 9776 99999999998 67889999999 57898851 47888888999999999999985211 11001111
Q ss_pred ---cCCcEEEeCCcccccccCCCCCCceEEEEE-cccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHH
Q 001989 782 ---IGADVCHLNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISY 857 (985)
Q Consensus 782 ---~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~-~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~ 857 (985)
.+.++++.|++|+|+. +|.++|++++ ++++.+.+.... . ..+.+. +.....++.
T Consensus 209 ~~~~~~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~~-~-----------~~~~~~------~~~~~~a~~ 266 (377)
T 3fdb_A 209 DTAASVCITITAPSKAWNI----AGLKCAQIIFSNPSDAEHWQQLS-P-----------VIKDGA------STLGLIAAE 266 (377)
T ss_dssp HHHHHHEEEEECSTTTTTC----GGGCCEEEECCSHHHHHHHHHSC-H-----------HHHCCC------CHHHHHHHH
T ss_pred ccCCCcEEEEEeChHhccC----cchhheEEEeCCHHHHHHHHHHH-H-----------hhcCCC------CHHHHHHHH
Confidence 2234888899999854 3567897776 555544332110 0 000111 112222233
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHC-CCccC
Q 001989 858 TYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY-GFHGP 935 (985)
Q Consensus 858 a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~-Gi~~~ 935 (985)
+.+.. +.+.+++..++..++++++.+.|++ ..++....+.+..+ +.++++. .+.+ .++.+.|.++ ||.+.
T Consensus 267 ~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~-~~~~~~l~~~~gi~v~ 338 (377)
T 3fdb_A 267 AAYRY-GTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQATYL--MWIDFRD----TTIE-GSPSEFFIEKAKVAMN 338 (377)
T ss_dssp HHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSBCSE--EEEECTT----SCCC-SCHHHHHHHHHCEECE
T ss_pred HHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCeeEE--EEEECcc----cCCC-HHHHHHHHHhCCEEec
Confidence 44442 3455677777888899999999976 22332222222222 2366542 1233 4677777765 99875
Q ss_pred CCC-C--CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 936 TMS-W--PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 936 ~~~-~--p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
... + +..+++||+++ .++++|++ +++.|++++++
T Consensus 339 ~g~~~~~~~~~~~Ris~~--~~~e~i~~--~l~~l~~~l~~ 375 (377)
T 3fdb_A 339 DGAWFGEDGTGFCRLNFA--TSREVLEE--AIDRMAKAVSH 375 (377)
T ss_dssp EGGGGCGGGTTEEEEECC--SCHHHHHH--HHHHHHHHHTT
T ss_pred CChhccCCCCCEEEEEeC--CCHHHHHH--HHHHHHHHHhh
Confidence 321 2 23589999988 38999999 77888887764
No 199
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.76 E-value=1.3e-17 Score=191.65 Aligned_cols=308 Identities=15% Similarity=0.024 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~ 712 (985)
...++++.+++++|.+. .++.++|++|+..++.+++ ..++++|+++...|..+...+...|++++.+|++++
T Consensus 33 ~~~~l~~~la~~~~~~~-v~~~~ggt~al~~~~~~l~-------~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 104 (394)
T 1o69_A 33 FVNRFEQSVKDYSKSEN-ALALNSATAALHLALRVAG-------VKQDDIVLASSFTFIASVAPICYLKAKPVFIDCDET 104 (394)
T ss_dssp HHHHHHHHHHHHHCCSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCGGGTHHHHHTTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHhCCCc-EEEeCCHHHHHHHHHHHcC-------CCCCCEEEECCCccHHHHHHHHHcCCEEEEEEeCCC
Confidence 35688999999999854 3556778877755544431 146789999999898888888889999999999877
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCC-CCc-cCCcEEEeC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS-PGY-IGADVCHLN 790 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~-pg~-~g~Di~~~s 790 (985)
+.+|+++|++++++.++++++|++++ .+|... |+++|.++|+++|+++++|++|..+...... .+. .++|+.+++
T Consensus 105 ~~~d~~~l~~~i~~~~~~~~~v~~~~--~~G~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s 181 (394)
T 1o69_A 105 YNIDVDLLKLAIKECEKKPKALILTH--LYGNAA-KMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYN 181 (394)
T ss_dssp SSBCHHHHHHHHHHCSSCCCEEEEEC--GGGCCC-CHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECC
T ss_pred CCcCHHHHHHHHhcccCCceEEEEEC--CCCChh-hHHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEe
Confidence 89999999999983212688999987 579887 8999999999999999999998643221111 112 347888888
Q ss_pred CcccccccCCCCCCceEEEEEc-ccccCcCCC-CccccCC-CCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 791 LHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPS-HPVVSTG-GIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 791 ~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~-~~~g~~~-~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.||.+ +|+++|+++++ +++.+.+.. ...+... ...+. .+.+. +..+ ....++.+ +..+ +.
T Consensus 182 ~~K~l------~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~g~-~~~~----~~~~aa~~---l~~l--~~ 244 (394)
T 1o69_A 182 GNKII------TTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEH-LDYGY-NYRL----SNVLGAIG---VAQM--EV 244 (394)
T ss_dssp TTSSS------CCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCC-SSCCC-BCBC----CHHHHHHH---HHHH--TT
T ss_pred CCccC------CCCCceEEEECCHHHHHHHHHHHHhccccCccccc-cccCc-ccCc----CHHHHHHH---HHHH--HH
Confidence 89977 34578999996 555433210 0000000 00000 00000 0001 11111111 1111 23
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCeeecCCCC---ceeeEEEEEecCcc----------------ccCCCCHHHHHHHHH
Q 001989 868 LTEASKIAILNANYMAKRLEKHYPILFRGVNG---TVAHEFIVDLRGLK----------------NTAGIEPEDVAKRLM 928 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~---~~~~~~iv~~~~~~----------------~~~g~~~~~v~~~L~ 928 (985)
+.+..++..++++++.+.|++. +...++.. +.++.+.+.++.-. ...+.+..++.+.|.
T Consensus 245 l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 322 (394)
T 1o69_A 245 LEQRVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLK 322 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHH
Confidence 4556677788899999999764 32222111 12222445543100 000225678999999
Q ss_pred HCCCccCCCCC-----C-CC---------------CEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 929 DYGFHGPTMSW-----P-VP---------------GTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 929 ~~Gi~~~~~~~-----p-~~---------------~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
++||.+..... | .. ..+++....++|+||||+ ++++|+++++
T Consensus 323 ~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~--~~~~l~~~~~ 385 (394)
T 1o69_A 323 NKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYE--ISKLILKSIK 385 (394)
T ss_dssp HTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHH--HHHHHHHHHC
T ss_pred HcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHH--HHHHHHHHHh
Confidence 99998764321 1 11 346666688899999999 7777777654
No 200
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.76 E-value=2.9e-17 Score=191.37 Aligned_cols=316 Identities=13% Similarity=0.060 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHK-ARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA- 711 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~-~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~- 711 (985)
..++++.+++++|.+. .+++++|++|+..++.+++.+.. .....++++|+++...|..+...+...|++++.+++++
T Consensus 64 ~~~l~~~la~~~g~~~-~i~~~sGt~a~~~al~~l~~~~~~~~~~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 142 (437)
T 3bb8_A 64 NDAFEKKLGEYLGVPY-VLTTTSGSSANLLALTALTSPKLGVRALKPGDEVITVAAGFPTTVNPTIQNGLIPVFVDVDIP 142 (437)
T ss_dssp HHHHHHHHHHHHTCSE-EEEESCHHHHHHHHHHHTTCGGGGGGSCCTTCEEEECSSSCHHHHHHHHHTTCEEEECCEETT
T ss_pred HHHHHHHHHHHHCCCc-EEEeCCHHHHHHHHHHHhhhcccccccCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEeccCc
Confidence 5688999999999874 46667888777555544310000 00024678999999888877777888999999999876
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC--CcEEEe
Q 001989 712 KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG--ADVCHL 789 (985)
Q Consensus 712 ~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g--~Di~~~ 789 (985)
++.+|+++|+++++ ++|++|++++ .+|... |+++|.++|+++|+++|+|++|..+... ....++ .|+++.
T Consensus 143 ~~~~d~~~l~~~i~---~~~~~v~~~~--~~g~~~-~~~~i~~l~~~~~~~li~D~a~~~g~~~--~~~~~~~~~d~~~~ 214 (437)
T 3bb8_A 143 TYNVNASLIEAAVS---DKTKAIMIAH--TLGNLF-DLAEVRRVADKYNLWLIEDCCDALGSTY--DGKMAGTFGDIGTV 214 (437)
T ss_dssp TTEECGGGHHHHCC---TTEEEEEEEC--GGGCCC-CHHHHHHHHHHHTCEEEEECTTCTTCEE--TTEETTSSSSEEEE
T ss_pred cCCcCHHHHHHhcC---CCCeEEEEeC--CCCChh-cHHHHHHHHHHcCCEEEEECccccCceE--CCeecccccCEEEE
Confidence 68899999999997 7899999975 457666 8999999999999999999998643321 222344 799888
Q ss_pred CCcccccccCCCCCCceEEEEEcccc-cCc---CCCCccc----cCCC------------CCCCCC-CCCCCCC-CCcch
Q 001989 790 NLHKTFCIPHGGGGPGMGPIGVKKHL-APF---LPSHPVV----STGG------------IPAPEK-SQPLGTI-AAAPW 847 (985)
Q Consensus 790 s~hK~l~~p~g~GGPg~G~i~~~~~l-~~~---lp~~~~g----~~~~------------~~~~~~-~~~~~~i-~s~~~ 847 (985)
|++|+.+. +|+.+|+++++++. .+. +.+...+ ...+ ....+. +..+... ..+..
T Consensus 215 s~~~~k~l----~~g~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 290 (437)
T 3bb8_A 215 SFYPAKHI----TMGEGGAVFTQSAELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLK 290 (437)
T ss_dssp ECSTTSSS----CCSSCEEEEESCHHHHHHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCC
T ss_pred ECcCCcCC----CCCCeEEEEeCCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccCcccC
Confidence 87676654 34456888887543 221 1111000 0000 000000 0011000 00000
Q ss_pred hhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCe-eecCCC-C--ceeeEEEEEecCccccCCCCHHHH
Q 001989 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPI-LFRGVN-G--TVAHEFIVDLRGLKNTAGIEPEDV 923 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l-~~~~~~-~--~~~~~~iv~~~~~~~~~g~~~~~v 923 (985)
.....++.+.+.+.. +.+..++..++++++.++|++..++ .++... . +..+.+++.++. ..+.+..++
T Consensus 291 ~~~~~aa~~l~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l 362 (437)
T 3bb8_A 291 ITDMQAACGLAQLER-----IEEFVEKRKANFKYLKDALQSCADFIELPEATENSDPSWFGFPITLKE---DSGVSRIDL 362 (437)
T ss_dssp CBHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHGGGGTTTEECCCCCTTEECCCSSEEEEECG---GGSSCHHHH
T ss_pred CCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhccCCccccCCCCCCCceeeEEEEEEECC---cCcCcHHHH
Confidence 012222223333332 2344455677889999999863222 222110 1 111124444431 014578899
Q ss_pred HHHHHHCCCccCCCCC------CC-------------------CCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 924 AKRLMDYGFHGPTMSW------PV-------------------PGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 924 ~~~L~~~Gi~~~~~~~------p~-------------------~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.+.|.++||.++..+. |. .+.+|++++..+|++|||+ ++++|+++++
T Consensus 363 ~~~L~~~GI~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~--i~~~l~~~~~ 434 (437)
T 3bb8_A 363 VKFLDEAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDY--VVSKFEEFFG 434 (437)
T ss_dssp HHHHHHTTBCCBCCTTSSGGGSGGGSSCCCEECSCCHHHHHHHHHEEEECCSTTCCHHHHHH--HHHHHHHHTT
T ss_pred HHHHHHCCCceeccCCcccccCchhhccCccccCCCcHHHHHhcCEEEecCCCCCCHHHHHH--HHHHHHHHHc
Confidence 9999999998764321 10 1259999999999999999 7777777654
No 201
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.76 E-value=2.8e-18 Score=192.96 Aligned_cols=288 Identities=19% Similarity=0.225 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCccc-H--HHHHHCCcEEEEEcCC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN-P--ATAAMCGMKIVSVGTD 710 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~-~--~~a~~~G~~vv~v~~d 710 (985)
..++++++++++|.+.. ++.++|+++++.++.++ ..++|+|+++++.|+.. . ..+...|++++.+ .+
T Consensus 40 ~~~l~~~la~~~g~~~~-~~~~~gt~a~~~~~~~~--------~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~ 109 (347)
T 1jg8_A 40 INELERLAAETFGKEAA-LFVPSGTMGNQVSIMAH--------TQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PG 109 (347)
T ss_dssp HHHHHHHHHHHHTCSEE-EEESCHHHHHHHHHHHH--------CCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CE
T ss_pred HHHHHHHHHHHhCCceE-EEecCcHHHHHHHHHHh--------cCCCCEEEEcCcchhhhccccchhhccCeEEEEe-cC
Confidence 45788999999998754 55667877765444332 14789999998877532 1 2456789999988 55
Q ss_pred CCCCCCHHHHHHHHHhc---CCCEEEEEEEcCC-Cc-cccc--cCHHHHHHHHHHcCCEEEEEcccccc---ccCCCCCC
Q 001989 711 AKGNINIEELRKAAEAN---RDNLSTLMVTYPS-TH-GVYE--EGIDEICKIIHDNGGQVYMDGANMNA---QVGLTSPG 780 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~---~~~t~~Vvv~~pn-~~-G~i~--~di~eI~~la~~~galliVD~a~~~~---~~~l~~pg 780 (985)
+++.+|+++|++++++. .++|++|++++|+ ++ |.+. .++++|.++|+++|+++++|++|..+ ..+. .+.
T Consensus 110 ~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~-~~~ 188 (347)
T 1jg8_A 110 KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGV-PVK 188 (347)
T ss_dssp ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCC-CHH
T ss_pred CCCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCC-ChH
Confidence 66778999999999721 1269999999995 67 9875 14689999999999999999987431 1121 122
Q ss_pred --ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCC--CccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHH
Q 001989 781 --YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS--HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 781 --~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~--~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a 856 (985)
..++|++++++||+|+ +|.+++++.++++.+.+.. ..++ ++... .......+
T Consensus 189 ~~~~~~d~~~~s~sK~l~------~~~G~~~~~~~~~~~~~~~~~~~~~--------------~~~~~----~~~~~~~~ 244 (347)
T 1jg8_A 189 EYAGYADSVMFCLSKGLC------APVGSVVVGDRDFIERARKARKMLG--------------GGMRQ----AGVLAAAG 244 (347)
T ss_dssp HHHHTCSEEEEESSSTTC------CSSCEEEEECHHHHHHHHHHHHHHT--------------CCCSS----THHHHHHH
T ss_pred HhcccccEEEEecccccC------CCceEEEEcCHHHHHHHHHHHHHcC--------------CchhH----HHHHHHHH
Confidence 1368988889999985 3322456666655433210 0000 01110 11111112
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccC
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP 935 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~ 935 (985)
...+...- +.+ ++..++++++.+.|++ ++.+....+.+ .+ +.+.++. .+.+..++.++|.++||.+.
T Consensus 245 ~~~l~~~~-~~~----~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~--~~~~~~~----~~~~~~~~~~~l~~~gi~v~ 312 (347)
T 1jg8_A 245 IIALTKMV-DRL----KEDHENARFLALKLKEIGYSVNPEDVKT-NM--VILRTDN----LKVNAHGFIEALRNSGVLAN 312 (347)
T ss_dssp HHHHHHSS-TTH----HHHHHHHHHHHHHHHHHTCBCCGGGCCS-SE--EEEECTT----SSSCHHHHHHHHHHHTEECE
T ss_pred HHHHHHHH-HHH----HHHHHHHHHHHHHHHhcCceeccCCCcc-eE--EEEEccc----ccCCHHHHHHHHHHCCCEEe
Confidence 22233211 112 2334567888888876 44432222212 22 3455541 13568899999999999875
Q ss_pred CCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 936 TMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 936 ~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
... .+.+|++++..++++|+++ +++.|++++++
T Consensus 313 ~~~---~~~iRl~~~~~~~~e~i~~--~~~~l~~~l~~ 345 (347)
T 1jg8_A 313 AVS---DTEIRLVTHKDVSRNDIEE--ALNIFEKLFRK 345 (347)
T ss_dssp EEE---TTEEEEECCTTSCHHHHHH--HHHHHHHHHHH
T ss_pred cCC---CCeEEEEeCCCCCHHHHHH--HHHHHHHHHHh
Confidence 432 3689999988999999999 78888887764
No 202
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.76 E-value=6.5e-18 Score=197.52 Aligned_cols=271 Identities=13% Similarity=0.062 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--h
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--K 289 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--~ 289 (985)
.+.++++.+|+ +|.+ ..+.+++|+|.++++++.++ . ++||+|++++..|+++...+.. .|+++++++. +
T Consensus 58 ~~~~~~~~la~-~g~~-~~v~~~~G~t~a~~~~~~a~-~--~~gd~Vlv~~~~h~s~~~~~~~----~G~~~~~v~~~~~ 128 (446)
T 2x3l_A 58 VILKSMKQVEK-HSDY-DGYFLVNGTTSGILSVIQSF-S--QKKGDILMARNVHKSVLHALDI----SQQEGHFIETHQS 128 (446)
T ss_dssp HHHHHHHHHCS-CTTE-EEEEESSHHHHHHHHHHHTT-T--TSSSCEEECTTCCHHHHHHHHH----HTCCEEECEEEEC
T ss_pred HHHHHHHHHHh-cCCC-ceEEEeCCHHHHHHHHHHHh-c--CCCCEEEEecCccHHHHHHHHH----cCCeEEEEeCeec
Confidence 45678899999 9987 55777888888888777654 2 3889999999999999998864 3666666654 2
Q ss_pred h---------hhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccC-----CCCCCcccceEEEe
Q 001989 290 D---------IDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTI-----LKPPGELGADIVVG 354 (985)
Q Consensus 290 ~---------l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~-----l~~~~~~GaDi~v~ 354 (985)
+ +++ +++++++|++++||++|.+.|+++|+++||++|+++++|. .++... .....++|+|++++
T Consensus 129 ~~~~~~~~~d~~~l~~~~~~~v~~~~~n~~G~~~~l~~I~~l~~~~~~~livDe-a~~~~~~f~~~~~~~~~~g~Di~~~ 207 (446)
T 2x3l_A 129 PLTNHYNKVNLSRLNNDGHKLVVLTYPNYYGETFNVEEVIKSLHQLNIPVLIDE-AHGAHFGLQGFPDSTLNYQADYVVQ 207 (446)
T ss_dssp TTTSSEEEEEC-------CCEEEEESSCTTSCCCCHHHHHHHHHHTTCCEEEEC-TTCTTTTSTTSCCCGGGGTCSEEEE
T ss_pred cccCcCCCCCHHHHcCCCceEEEEECCCCCeEecCHHHHHHHHHhcCCeEEEcc-hhhhhhccCCCCCChHHcCCCEEEE
Confidence 1 222 3567899999999999999999999999999999999953 333211 11234578999999
Q ss_pred cC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH
Q 001989 355 SA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 355 s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~ 433 (985)
|. |++++ ++++|++++++++++ +. ++ +........+|++. ..+.++.++.
T Consensus 208 S~~K~l~~-----~~g~g~l~~~~~~i~-~~-~~-------------------~~~~~~~~~~s~~~---~~~aal~~a~ 258 (446)
T 2x3l_A 208 SFHKTLPA-----LTMGSVLYIHKNAPY-RE-NI-------------------IEYLSYFQTSSPSY---LIMASLESAA 258 (446)
T ss_dssp CHHHHSSS-----CTTCEEEEEETTCTT-HH-HH-------------------HHHHHHHSCSSCCH---HHHHHHHHHH
T ss_pred CCcccccc-----ccccEEEEEcCCcCC-HH-HH-------------------HHHHHHHcCCCchH---HHHHHHHHHH
Confidence 98 65643 345789999876543 10 00 00000112233333 2233333333
Q ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC--HHHHHHHHHHcCceeeeecCCeEEEEe
Q 001989 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVVDSNTVTASF 511 (985)
Q Consensus 434 ~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~~~~~lris~ 511 (985)
.++...|.+++.++..++++++++. | ++++.......+.+..++ +.++.+.|.++||.++....+.+|+++
T Consensus 259 --~~l~~~g~~~~~~~~~~l~~~l~~~----g-~~~~~~~~~~~l~i~~~~~~~~~l~~~L~~~GI~v~~~g~~~iRi~~ 331 (446)
T 2x3l_A 259 --QFYKTYDSTLFFAKRAQLIECLENK----G-FEMLQVDDPLKLLIKYEGFTGHDIQNWFMNAHIYLELADDYQALAIL 331 (446)
T ss_dssp --HHHHHCCCHHHHHHHHHHHHHHHHH----T-CEEEECSSTTEEEEECTTSCHHHHHHHHHHTTEEESEECSSCEEEEC
T ss_pred --HHHHHhCHHHHHHHHHHHHHHHHHc----C-CEECcCCCCeEEEEEeCCcCHHHHHHHHHHCCCEEEecCCCEEEEEe
Confidence 4444445566788888888888887 5 777632111235666654 888999999999998744457899999
Q ss_pred ccCCCHHHHHHHHHHHhC
Q 001989 512 DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 512 t~~~t~edId~li~aL~~ 529 (985)
+.++|++|+ +++++|.+
T Consensus 332 ~~~~t~e~i-~l~~aL~~ 348 (446)
T 2x3l_A 332 PLWHHDDTY-LFDSLLRK 348 (446)
T ss_dssp CCCCTTCCC-CHHHHHHH
T ss_pred ecCCCHHHH-HHHHHHHH
Confidence 999999999 99999874
No 203
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.76 E-value=5.3e-17 Score=186.45 Aligned_cols=275 Identities=14% Similarity=0.119 Sum_probs=189.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC
Q 001989 208 GRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD 287 (985)
Q Consensus 208 g~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~ 287 (985)
|..+...++++.+|+++|.+ . ..++.+||.+++.++.++ .++||+|+++...|+++...++ ..|++++.++
T Consensus 87 g~~~~~~~l~~~la~~~g~~-~-~i~~~sGs~a~~~~~~~~---~~~gd~v~~~~~~~~~~~~~~~----~~g~~~~~~~ 157 (401)
T 1fc4_A 87 GTQDSHKELEQKLAAFLGME-D-AILYSSCFDANGGLFETL---LGAEDAIISDALNHASIIDGVR----LCKAKRYRYA 157 (401)
T ss_dssp CCBHHHHHHHHHHHHHHTCS-E-EEEESCHHHHHHTTHHHH---CCTTCEEEEETTCCHHHHHHHH----TSCSEEEEEC
T ss_pred CCcHHHHHHHHHHHHHhCCC-c-EEEeCChHHHHHHHHHHH---cCCCCEEEEcchhHHHHHHHHH----HcCCceEEEC
Confidence 33456778999999999988 3 446667776666554443 2488999999999998887653 4688888875
Q ss_pred c---hhhhc-cCC------CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCC---------CCcc
Q 001989 288 L---KDIDY-KSG------DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP---------PGEL 347 (985)
Q Consensus 288 ~---~~l~~-l~~------~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~---------~~~~ 347 (985)
. +++++ +.+ ++++|++.+| |++|.+.|+++|.++|+++|+++++| +..+.+...+ .-..
T Consensus 158 ~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D-e~~~~g~~~~~g~~~~~~~~~~~ 236 (401)
T 1fc4_A 158 NNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVD-DSHAVGFVGENGRGSHEYCDVMG 236 (401)
T ss_dssp TTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEE-CTTTTTTSSTTSCCHHHHTTCTT
T ss_pred CCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEE-CcccccccCCCCCccHHHcCCCc
Confidence 3 56665 543 7899999888 88999999999999999999999995 3444444311 1123
Q ss_pred cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHH
Q 001989 348 GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQAL 426 (985)
Q Consensus 348 GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l 426 (985)
++|++++|. |.|++ ++| |++++++++++.+... ...+. ..++.|. ...
T Consensus 237 ~~di~~~s~sK~~~~-----~~g-G~~~~~~~~~~~l~~~----------~~~~~------------~~~~~~~---~~~ 285 (401)
T 1fc4_A 237 RVDIITGTLGKALGG-----ASG-GYTAARKEVVEWLRQR----------SRPYL------------FSNSLAP---AIV 285 (401)
T ss_dssp CCSEEEEESSSTTCS-----SSC-EEEEECHHHHHHHHHH----------CHHHH------------HSCCCCH---HHH
T ss_pred CCcEEEecchhhccC-----CCC-EEEEcCHHHHHHHHHh----------CcCce------------eCCCCCH---HHH
Confidence 689999998 77743 233 8999998887655110 00000 0111111 222
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeeec
Q 001989 427 LANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVVD 503 (985)
Q Consensus 427 ~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~~ 503 (985)
.+..+++ ..+.. .+++.++..++.+++.+.|+++| +++.. ....-+.+..++ ..++.+.|.++||.+....
T Consensus 286 ~a~~~~l--~~~~~--~~~~~~~~~~~~~~l~~~L~~~g-~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~ 359 (401)
T 1fc4_A 286 AASIKVL--EMVEA--GSELRDRLWANARQFREQMSAAG-FTLAG-ADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFF 359 (401)
T ss_dssp HHHHHHH--HHHHT--CHHHHHHHHHHHHHHHHHHHHTT-CCBCC-SSSSEEEEEEECHHHHHHHHHHHHHTTEECCEEC
T ss_pred HHHHHHH--HHHhc--CHHHHHHHHHHHHHHHHHHHHcC-CcccC-CCCCEEEEEcCChHHHHHHHHHHHHCCcEEeeec
Confidence 2222322 33211 36788888999999999999986 77663 222334455543 6789999999999876431
Q ss_pred -------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 504 -------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 -------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.+|++++..+|++|+++++++|.+
T Consensus 360 ~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 392 (401)
T 1fc4_A 360 YPVVPKGQARIRTQMSAAHTPEQITRAVEAFTR 392 (401)
T ss_dssp TTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 24799999999999999999999974
No 204
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.76 E-value=2.8e-17 Score=190.06 Aligned_cols=294 Identities=16% Similarity=0.172 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
.+++++++++++|.+. .++.++|++|+..++.++ ..++++|+++...|+.+... ++..|++++.++.
T Consensus 58 ~~~l~~~la~~~g~~~-~~~~~~gt~a~~~al~~l--------~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 128 (412)
T 2cb1_A 58 AKALEERLKALEGALE-AVVLASGQAATFAALLAL--------LRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP 128 (412)
T ss_dssp HHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHTT--------CCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECS
T ss_pred HHHHHHHHHHHhCCCc-EEEECCHHHHHHHHHHHH--------hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECC
Confidence 5688899999999874 455677887775554433 13678999998877654433 3457999999986
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
|+++|+++++ ++|++|++++| |.+|.+. |+++|+++|+++|+++|+|++|..+ +....+..+++|+++
T Consensus 129 ------~~~~l~~~i~---~~~~~v~~~~~~n~~G~~~-~l~~i~~l~~~~~~~li~D~~~~~~-~~~~~~~~~~~di~~ 197 (412)
T 2cb1_A 129 ------EPEAVREALS---AKTRAVFVETVANPALLVP-DLEALATLAEEAGVALVVDNTFGAA-GALCRPLAWGAHVVV 197 (412)
T ss_dssp ------SHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHTCEEEEECGGGTT-TTSCCGGGGTCSEEE
T ss_pred ------CHHHHHHHhc---cCCeEEEEeCCCCCCcccc-cHHHHHHHHHHcCCEEEEECCCccc-cccCCccccCCeEEE
Confidence 4999999997 78999999998 4699998 8999999999999999999998533 112345567899999
Q ss_pred eCCcccccccCCCCCCceEEEEE-ccccc-----CcCCCCccccC------CCCCCCCCCCCCCCCCCcchhhhHHHHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGV-KKHLA-----PFLPSHPVVST------GGIPAPEKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~-~~~l~-----~~lp~~~~g~~------~~~~~~~~~~~~~~i~s~~~g~~~~~~~a 856 (985)
+|+||+|+.| |++ +|.+++ ++.+. ...++...|.. .+.........+.+..+. ...+.. +
T Consensus 198 ~S~~K~~~~~---~~~-~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~-~~~~~~---a 269 (412)
T 2cb1_A 198 ESLTKWASGH---GSV-LGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGM-ALSPFN---A 269 (412)
T ss_dssp EETTTTTTCS---SCC-CCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTTTCC-CCCHHH---H
T ss_pred ECCcccccCC---CCc-EEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHhcCC-CCChHH---h
Confidence 9999998543 222 454444 43321 00011100100 000000000000010100 001111 2
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeee-cCCC------------CceeeEEEEEecCccccCCCCHH
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILF-RGVN------------GTVAHEFIVDLRGLKNTAGIEPE 921 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~-~~~~------------~~~~~~~iv~~~~~~~~~g~~~~ 921 (985)
|..+. +.+.+.+..++..++++++.++|.+ ++.+++ ++.. ......+.+.+ + +.+
T Consensus 270 ~~~~~--~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-------~-~~~ 339 (412)
T 2cb1_A 270 YLLFQ--GLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-------G-DLE 339 (412)
T ss_dssp HHHHH--HGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-------S-SHH
T ss_pred HHHHc--CCchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-------C-CHH
Confidence 22222 2234455556667889999999986 344332 2210 01111233332 2 567
Q ss_pred HHHHHHHHCCCccCCCC---------CC-------C-----------CCEEEEeccCCCCHHHHHHHHccCChh
Q 001989 922 DVAKRLMDYGFHGPTMS---------WP-------V-----------PGTLMIEPTESESKSWTGIVMLSSPSE 968 (985)
Q Consensus 922 ~v~~~L~~~Gi~~~~~~---------~p-------~-----------~~~lris~t~~~t~eeId~~~~~~~l~ 968 (985)
++.+.|.+.||.+ ..+ .| + ++.||+|++..+++++||+ +.++|+
T Consensus 340 ~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~--l~~al~ 410 (412)
T 2cb1_A 340 RASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLAL--FEEALE 410 (412)
T ss_dssp HHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHH--HHHHHH
T ss_pred HHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHH--HHHHHh
Confidence 7888888889876 321 11 0 5799999999999999999 555554
No 205
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.76 E-value=1.2e-17 Score=193.88 Aligned_cols=306 Identities=13% Similarity=0.119 Sum_probs=188.3
Q ss_pred hHHHHHHHHHHHHHHHhC----CCccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH-HHCCc
Q 001989 629 GYQEMFNNLGEWLCTITG----FDSFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA-AMCGM 702 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G----~~~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a-~~~G~ 702 (985)
|..++.+.+.+++.+.+| .+...+ +.+++++++..++.++. .++++|+++++.|+.+...+ ...|+
T Consensus 84 g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~--------~~gd~Vl~~~p~y~~~~~~~~~~~g~ 155 (428)
T 1iay_A 84 GLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA--------DPGDAFLVPSPYYPAFNRDLRWRTGV 155 (428)
T ss_dssp CCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC--------CTTCEEEEESSCCTTHHHHTTTTTCC
T ss_pred CcHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhC--------CCCCeEEEccCCCcchHHHHHHhcCC
Confidence 444444444444444444 444444 44445556544443331 36789999988887765533 46899
Q ss_pred EEEEEcCCC--CCCCCHHHHHHHHHhc---CCCEEEEEEEcCC-CccccccC---HHHHHHHHHHcCCEEEEEcccccc-
Q 001989 703 KIVSVGTDA--KGNINIEELRKAAEAN---RDNLSTLMVTYPS-THGVYEEG---IDEICKIIHDNGGQVYMDGANMNA- 772 (985)
Q Consensus 703 ~vv~v~~d~--~g~iD~e~L~~~i~~~---~~~t~~Vvv~~pn-~~G~i~~d---i~eI~~la~~~galliVD~a~~~~- 772 (985)
+++.+|.+. ++.+|+++|++++++. .+++++|++++|+ ++|.+. + +++|.++|+++|+++++|+++...
T Consensus 156 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~ 234 (428)
T 1iay_A 156 QLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTL-DKDTLKSVLSFTNQHNIHLVCDEIYAATV 234 (428)
T ss_dssp EEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECTTGGGC
T ss_pred EEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcC-CHHHHHHHHHHHHHCCeEEEEeccccccc
Confidence 999999864 3578999999999731 2479999999995 599987 7 999999999999999999998531
Q ss_pred ccC--CCCCCc---------cCCc--EEEeCCcccccccCCCCCCceEEEEE-cccccCcCCCCccccCCCCCCCCCCCC
Q 001989 773 QVG--LTSPGY---------IGAD--VCHLNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVSTGGIPAPEKSQP 838 (985)
Q Consensus 773 ~~~--l~~pg~---------~g~D--i~~~s~hK~l~~p~g~GGPg~G~i~~-~~~l~~~lp~~~~g~~~~~~~~~~~~~ 838 (985)
..+ +..... +++| +++.|+||+|+.| |.++|++++ ++++.+.+... . .
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~----Glr~G~~~~~~~~~~~~~~~~--~------------~ 296 (428)
T 1iay_A 235 FDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLP----GFRVGIIYSFNDDVVNCARKM--S------------S 296 (428)
T ss_dssp CSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCG----GGCEEEEEESCHHHHHHHHHH--H------------T
T ss_pred cCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCC----CceEEEEEeCCHHHHHHHHHH--H------------h
Confidence 111 101011 1268 8889999998543 566899998 45554433210 0 0
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCcccc
Q 001989 839 LGTIAAAPWGSALILPISYTYIAMM--GSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNT 915 (985)
Q Consensus 839 ~~~i~s~~~g~~~~~~~a~a~l~~l--g~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~ 915 (985)
+.+.+ .....++.+++... ..+.+++..++..++++++.+.|++ ++.+. .+.+..+ +.++++.....
T Consensus 297 ~~~~~------~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~g~~--~~~~~~~~~~~ 366 (428)
T 1iay_A 297 FGLVS------TQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCL--KNNAGLF--CWMDLRPLLRE 366 (428)
T ss_dssp TSCCC------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBC--CCSSSSE--EEEECGGGCSS
T ss_pred cccCC------HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--CCCeeEE--EEEechhhcCC
Confidence 01111 11112222223221 1124556666778889999999987 44432 2212222 34555410000
Q ss_pred CC-CCHHHHHHHHHHC-CCccCCCC-CC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 916 AG-IEPEDVAKRLMDY-GFHGPTMS-WP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 916 ~g-~~~~~v~~~L~~~-Gi~~~~~~-~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.. ....++.++|.++ ||.+.... +. .++++||+++ ..+++|+++ +++.|++++++.
T Consensus 367 ~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~e~i~~--~~~~l~~~l~~~ 427 (428)
T 1iay_A 367 STFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDI--ALARIRRFVGVE 427 (428)
T ss_dssp SSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHH--HHHHHHHHHHTT
T ss_pred CchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-cCCHHHHHH--HHHHHHHHHhcc
Confidence 00 1245788999886 99875422 22 1478999998 689999999 778888887653
No 206
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.76 E-value=4.3e-17 Score=189.95 Aligned_cols=301 Identities=12% Similarity=0.076 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCcE-----
Q 001989 632 EMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGMK----- 703 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~~----- 703 (985)
+...+++++++++++.. ...++.++|++|+++++.+++.+. ++++||+ ...+|+.........|..
T Consensus 86 ~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 159 (439)
T 3dxv_A 86 APAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKAT------GRSGVIAFAGAYHGCTVGSMAFSGHSVQADA 159 (439)
T ss_dssp HHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHH------SCCEEEEETTCCCCSSHHHHCC---------
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHh------CCCEEEEECCCCCCCcHHHHhhcCCCchhhc
Confidence 45678899999999543 345677899999988887766542 3445555 667888877665443322
Q ss_pred ---------EEEEcCCCCCCC-----CHHHHHHHHH-hcCCCEEEEEEEcCC-CccccccC----HHHHHHHHHHcCCEE
Q 001989 704 ---------IVSVGTDAKGNI-----NIEELRKAAE-ANRDNLSTLMVTYPS-THGVYEEG----IDEICKIIHDNGGQV 763 (985)
Q Consensus 704 ---------vv~v~~d~~g~i-----D~e~L~~~i~-~~~~~t~~Vvv~~pn-~~G~i~~d----i~eI~~la~~~gall 763 (985)
+..+|.+.++.. |+++|+++++ .+.+++++|+++.++ +.|.+. + +++|.++|+++|+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~-~~~~~l~~l~~l~~~~~~~l 238 (439)
T 3dxv_A 160 AKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIV-PPDGFLRKFADICRAHGILV 238 (439)
T ss_dssp ----CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBC-CCTTHHHHHHHHHHHTTCEE
T ss_pred cccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCcc-CCHHHHHHHHHHHHHcCCEE
Confidence 233454332222 7999999993 223678888887653 578776 5 999999999999999
Q ss_pred EEEccccccccCCCCC---C--ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCC
Q 001989 764 YMDGANMNAQVGLTSP---G--YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQP 838 (985)
Q Consensus 764 iVD~a~~~~~~~l~~p---g--~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~ 838 (985)
|+|++|. +++....+ . ...+|++++ .|+|+ +|.++|++++++++.+.+..... .
T Consensus 239 i~DE~~~-g~g~~g~~~~~~~~~~~~di~s~--sK~~~-----~G~riG~~~~~~~~~~~~~~~~~-------------~ 297 (439)
T 3dxv_A 239 VCDEVKV-GLARSGRLHCFEHEGFVPDILVL--GKGLG-----GGLPLSAVIAPAEILDCASAFAM-------------Q 297 (439)
T ss_dssp EEECTTT-CTTTTSSSSGGGGTTCCCSEEEE--CGGGG-----TTSCCEEEEEEHHHHTSCSSSSC-------------C
T ss_pred EEecccc-CCCcCchhhHHHhcCCCCCEEEE--cchhc-----CCcceEEEEECHHHHhhhcCCCc-------------C
Confidence 9999984 22211111 1 123688754 58885 35678999999887765532110 0
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCee-ecCCCCceeeEEEEEec---C
Q 001989 839 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL-FRGVNGTVAHEFIVDLR---G 911 (985)
Q Consensus 839 ~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~-~~~~~~~~~~~~iv~~~---~ 911 (985)
.++ +++..++++.+.+..+..+. ..++..++.++++++|++. +... ...+.+.++ .+.+. .
T Consensus 298 -----~t~-~~~~~~~aa~aal~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~ 365 (439)
T 3dxv_A 298 -----TLH-GNPISAAAGLAVLETIDRDD---LPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLAC---GMELVCDRQ 365 (439)
T ss_dssp -----TTT-TCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEE---EEEEEEETT
T ss_pred -----CCc-ccHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEE---EEEEecCcc
Confidence 112 23444455555666554433 3445666777787777651 2221 111112222 22221 0
Q ss_pred ccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 912 LKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 912 ~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.....+....++.+.|.++|+.+..... ..+.+||+++..+|++||++ +++.|+++++++.
T Consensus 366 ~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~iRi~~~~~~t~e~i~~--~l~~l~~~l~~~~ 426 (439)
T 3dxv_A 366 SREPARAETAKLIYRAYQLGLVVYYVGM-NGNVLEFTPPLTITETDIHK--ALDLLDRAFSELS 426 (439)
T ss_dssp TTEECHHHHHHHHHHHHHHTEECEEEST-TSCEEEECCCTTCCHHHHHH--HHHHHHHHHHTGG
T ss_pred ccCCCHHHHHHHHHHHHHCCcEEeecCC-CCCEEEEECCCCCCHHHHHH--HHHHHHHHHHHHh
Confidence 0000112356789999999998754321 13799999999999999999 8899999888764
No 207
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.76 E-value=9.7e-17 Score=184.20 Aligned_cols=287 Identities=17% Similarity=0.191 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCcE--------
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGMK-------- 703 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~~-------- 703 (985)
...++++.+++++|.+. .++.++|++|++.++.+++.+... +..++++||+ ...+|+.....+...|.+
T Consensus 83 ~~~~l~~~la~~~g~~~-v~~~~gg~~a~~~al~~~~~~~~~-~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p 160 (397)
T 2ord_A 83 PQMELAELLSKNTFGGK-VFFANTGTEANEAAIKIARKYGKK-KSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEP 160 (397)
T ss_dssp HHHHHHHHHHHTTTSCE-EEEESSHHHHHHHHHHHHHHHHHH-HCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCS
T ss_pred HHHHHHHHHHHhcCCCe-EEEeCCHHHHHHHHHHHHHHHhhc-CCCCCceEEEEcCCcCCCchhhhhccCChhhccccCC
Confidence 45678899999998643 456678888887777666543211 1112456776 456788877666666665
Q ss_pred ----EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcccc----ccCHHHHHHHHHHcCCEEEEEcccccccc
Q 001989 704 ----IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVY----EEGIDEICKIIHDNGGQVYMDGANMNAQV 774 (985)
Q Consensus 704 ----vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i----~~di~eI~~la~~~galliVD~a~~~~~~ 774 (985)
++.+|.+ |+++|+++++ +++++|++++| |++|.+ + ++++|.++|+++|+++++|+++. +++
T Consensus 161 ~~~~~~~~~~~-----d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~-~l~~l~~l~~~~~~~li~De~~~-~~~ 230 (397)
T 2ord_A 161 LVPGFEYFEFN-----NVEDLRRKMS---EDVCAVFLEPIQGESGIVPATKE-FLEEARKLCDEYDALLVFDEVQC-GMG 230 (397)
T ss_dssp CCTTEEEECTT-----CHHHHHHHCC---TTEEEEEECSEECTTTCEECCHH-HHHHHHHHHHHHTCEEEEECTTT-TTT
T ss_pred CCCCeeEecCC-----CHHHHHHHhh---cCeEEEEEecccCCCCcccCCHH-HHHHHHHHHHHcCCEEEEEeccc-CCc
Confidence 7777763 8999999997 78999999988 578983 4 79999999999999999999984 332
Q ss_pred CCCCC---CccC--CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 775 GLTSP---GYIG--ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 775 ~l~~p---g~~g--~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
-...+ ..++ +|++++ +|+|+ +|.++|++++++++. .+..... . .+.+. +
T Consensus 231 ~~g~~~~~~~~~~~~d~~s~--sK~~~-----~G~r~G~~~~~~~~~-~l~~~~~-------------~-~~~~~----~ 284 (397)
T 2ord_A 231 RTGKLFAYQKYGVVPDVLTT--AKGLG-----GGVPIGAVIVNERAN-VLEPGDH-------------G-TTFGG----N 284 (397)
T ss_dssp TTSSSSHHHHHTCCCSEEEE--CGGGG-----TTSCCEEEEECSTTC-CCCTTSS-------------C-CSSTT----C
T ss_pred cCccchhhhhhCCCCCeeee--ccccC-----CCcCeEEEEEchHhc-ccCCCCc-------------C-CCCCC----C
Confidence 11111 1223 788755 69985 356789999988765 4432100 0 01111 2
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc---cCCeee-cCCCCceeeEEEEEecCccccCCCCHHHHHH
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---HYPILF-RGVNGTVAHEFIVDLRGLKNTAGIEPEDVAK 925 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~---g~~l~~-~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~ 925 (985)
...+.++.+.|..+..+ +..++..++++++.+.|++ ++.+.. ..+.+.+ +.+.++. +.+..++.+
T Consensus 285 ~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~---~~~~~~~-----~~~~~~l~~ 353 (397)
T 2ord_A 285 PLACRAGVTVIKELTKE---GFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLM---IGIQFRE-----EVSNREVAT 353 (397)
T ss_dssp HHHHHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTE---EEEEECT-----TSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHhCCceEEEEEEeEE---EEEEECC-----hHHHHHHHH
Confidence 23334444556655433 3445677788888888875 244311 0111221 3445541 245789999
Q ss_pred HHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 926 RLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 926 ~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+|.++||.+.... ++.+|++++..++++|+++ +++.|++++++
T Consensus 354 ~l~~~gi~v~~~~---~~~iRis~~~~~~~e~i~~--~~~~l~~~l~~ 396 (397)
T 2ord_A 354 KCFENKLLVVPAG---NNTIRFLPPLTVEYGEIDL--AVETLKKVLQG 396 (397)
T ss_dssp HHHHTTEECEEET---TTEEEECCCTTCCHHHHHH--HHHHHHHHHHT
T ss_pred HHHHCCCEEccCC---CCEEEEECCcCCCHHHHHH--HHHHHHHHHhh
Confidence 9999999875432 4799999999999999999 77888887753
No 208
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.76 E-value=5.6e-17 Score=184.37 Aligned_cols=278 Identities=15% Similarity=0.141 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCC-CEEEEcCC-CCcccHHHHHHC-------CcE-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHR-NVCIIPVS-AHGTNPATAAMC-------GMK- 703 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~-~~IIv~~~-~Hg~~~~~a~~~-------G~~- 703 (985)
..++++++++++|.+...++.++|++|+..++.+++.+.. ++ .++ ++|++++. +|+......... |+.
T Consensus 72 ~~~l~~~la~~~g~~~~v~~~~g~t~a~~~~~~~~~~~~~-~~-~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 149 (375)
T 2eh6_A 72 QEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWR-DK-GKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEP 149 (375)
T ss_dssp HHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHHH-HT-TCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCS
T ss_pred HHHHHHHHHhhcCCCCeEEEeCchHHHHHHHHHHHHHHhc-cC-CCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCC
Confidence 3478899999999843345667888888766665443321 11 234 78888665 466555444332 222
Q ss_pred ----EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEcccccccc
Q 001989 704 ----IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQV 774 (985)
Q Consensus 704 ----vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~~ 774 (985)
+..+|. .|+++|+++++ +++++|++++| |++|.+. + +++|.++|+++|+++|+|+++. +++
T Consensus 150 ~~~~~~~~~~-----~d~~~l~~~l~---~~~~~v~~~~~~~~tG~~~-~~~~~l~~i~~~~~~~~~~li~De~~~-~~~ 219 (375)
T 2eh6_A 150 LVPGFSYAKL-----NDIDSVYKLLD---EETAGIIIEVIQGEGGVNE-ASEDFLSKLQEICKEKDVLLIIDEVQT-GIG 219 (375)
T ss_dssp CCSSEEEECT-----TCHHHHHTTCC---TTEEEEEECSEETTTTSEE-CCHHHHHHHHHHHHHHTCEEEEECTTT-TTT
T ss_pred CCCCceeCCC-----chHHHHHHHhc---CCeEEEEEeCccCCCCCcC-CCHHHHHHHHHHHHHhCCEEEEecccc-CCC
Confidence 455554 48999999987 78999999887 4689986 6 9999999999999999999985 222
Q ss_pred CCCC---CCccC--CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 775 GLTS---PGYIG--ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 775 ~l~~---pg~~g--~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
.... ...++ +|++++| |+|+ +|.++|++++++++.+.+.....+ .+.++ +
T Consensus 220 ~~~~~~~~~~~~~~~d~~s~S--K~~~-----~g~~~G~~~~~~~~~~~~~~~~~~--------------~~~~~----~ 274 (375)
T 2eh6_A 220 RTGEFYAYQHFNLKPDVIALA--KGLG-----GGVPIGAILAREEVAQSFTPGSHG--------------STFGG----N 274 (375)
T ss_dssp TTSSSSGGGGGTCCCSEEEEC--GGGG-----TTSCCEEEEEEHHHHTTCCTTSCC--------------CSSTT----C
T ss_pred CCCcchhhhhcCCCCCEEEEc--cccc-----CCCCeEEEEEcHHHHhhhcCCCCC--------------CCCCC----C
Confidence 1111 12345 8998766 9885 357899999988776655432111 01111 1
Q ss_pred hHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH
Q 001989 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~ 928 (985)
.....++.+.|..+. +..++..++++++.+.|++ +... ..+ .+. .+.+.++ .+..++.+.|.
T Consensus 275 ~~~~~~~~~~l~~~~-----~~~~~~~~~~~~l~~~L~~~~~~~-~~~-~g~---~~~~~~~-------~~~~~~~~~l~ 337 (375)
T 2eh6_A 275 PLACRAGTVVVDEVE-----KLLPHVREVGNYFKEKLKELGKGK-VKG-RGL---MLGLELE-------RECKDYVLKAL 337 (375)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTTSSE-EEE-ETT---EEEEECS-------SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCC-ceE-EEE---EEEEEEc-------CcHHHHHHHHH
Confidence 222233334444332 4455677888999999976 2222 111 111 1345543 14578999999
Q ss_pred HCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 929 DYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 929 ~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
++||.+.... ++.+|++++..++++|+++ +++.|+++
T Consensus 338 ~~gi~~~~~~---~~~iRi~~~~~~~~~~i~~--~~~~l~~~ 374 (375)
T 2eh6_A 338 EKGLLINCTA---GKVLRFLPPLIIQKEHIDR--AISVLREI 374 (375)
T ss_dssp HTTEECEEET---TTEEEECCCTTCCHHHHHH--HHHHHHHH
T ss_pred HCCCEEecCC---CCEEEEECCCCCCHHHHHH--HHHHHHHh
Confidence 9999875332 4799999999999999999 66766654
No 209
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.76 E-value=8.4e-17 Score=186.89 Aligned_cols=302 Identities=14% Similarity=0.136 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHhCCCcc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCcccHHHHHHCC----------
Q 001989 634 FNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPATAAMCG---------- 701 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~-~~Hg~~~~~a~~~G---------- 701 (985)
..++++.++++++.+.. .++.++|++|++.++.+++.+...+| .++++||+++ .+|+.........|
T Consensus 88 ~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g-~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~ 166 (429)
T 1s0a_A 88 AIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG-EARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWK 166 (429)
T ss_dssp HHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHT-CCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGT
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccC-CCCCeEEEECCCCCCCchhhhhhcCCchhhccccc
Confidence 45777889999976543 45668888888777776665433333 2577888866 57876654443222
Q ss_pred ---cEEEEEcCCC------CCCCCHHHHHHHHHhcCCCEEEEEEEcC--CCccccccC----HHHHHHHHHHcCCEEEEE
Q 001989 702 ---MKIVSVGTDA------KGNINIEELRKAAEANRDNLSTLMVTYP--STHGVYEEG----IDEICKIIHDNGGQVYMD 766 (985)
Q Consensus 702 ---~~vv~v~~d~------~g~iD~e~L~~~i~~~~~~t~~Vvv~~p--n~~G~i~~d----i~eI~~la~~~galliVD 766 (985)
..++.++++. .+.+|+++|+++++++++++++|+++.+ |.+|.+. + +++|.++|+++|+++|+|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~-~~~~~l~~i~~l~~~~~~~li~D 245 (429)
T 1s0a_A 167 GYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRM-YHPEWLKRIRKICDREGILLIAD 245 (429)
T ss_dssp TTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEE-BCTHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCccc-CCHHHHHHHHHHHHHcCCEEEEe
Confidence 1344555532 2468999999999754357777766544 3589765 5 999999999999999999
Q ss_pred ccccccccCCCCC-----CccCCcEEEeCCcccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCC
Q 001989 767 GANMNAQVGLTSP-----GYIGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG 840 (985)
Q Consensus 767 ~a~~~~~~~l~~p-----g~~g~Di~~~s~hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~ 840 (985)
++|. +++..... ....+|++++| |+|+ || .++|++++++++.+.+.... . . .. ....
T Consensus 246 e~~~-~~g~~g~~~~~~~~~~~~d~~t~s--K~l~-----~G~~~iG~~~~~~~~~~~l~~~~--~-~---~~-~~~~-- 308 (429)
T 1s0a_A 246 EIAT-GFGRTGKLFACEHAEIAPDILCLG--KALT-----GGTMTLSATLTTREVAETISNGE--A-G---CF-MHGP-- 308 (429)
T ss_dssp CTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGG-----TSSSCCEEEEECHHHHHHHHTST--T-S---SC-SCCC--
T ss_pred ehhh-CCcccchHHHhhhcCCCCCEEEec--cccc-----CCCccceEEEeCHHHHHHhhcCC--C-c---cc-ccCC--
Confidence 9984 22211111 12347888664 8874 45 67899999877654432110 0 0 00 0001
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc--C-Cee-ecCCCCceeeEEEEEecCccccC
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH--Y-PIL-FRGVNGTVAHEFIVDLRGLKNTA 916 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g--~-~l~-~~~~~~~~~~~~iv~~~~~~~~~ 916 (985)
+. .+++..++++.+.+..+..++ ..++..++++++.++|++. + .+. ..+ .+. + +.++++.
T Consensus 309 t~----~~n~~~~~a~~aal~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~-~--~~~~~~~----- 372 (429)
T 1s0a_A 309 TF----MGNPLACAAANASLAILESGD---WQQQVADIEVQLREQLAPARDAEMVADVRV-LGA-I--GVVETTH----- 372 (429)
T ss_dssp TT----TTCHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHGGGGGCTTEEEEEE-ETT-E--EEEEESS-----
T ss_pred CC----CCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHhcCCCEEEEEE-eeE-E--EEEEECC-----
Confidence 11 123333444455555543333 3456667788999998762 1 221 111 111 1 3445541
Q ss_pred CCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 917 GIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 917 g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+.+..++.+.|.++||.+... .+.+||+++..+|++|+++ +++.|++++++++.
T Consensus 373 ~~~~~~l~~~l~~~Gi~v~~~----~~~iRis~~~~~t~e~i~~--~~~~l~~~~~~~~~ 426 (429)
T 1s0a_A 373 PVNMAALQKFFVEQGVWIRPF----GKLIYLMPPYIILPQQLQR--LTAAVNRAVQDETF 426 (429)
T ss_dssp CBCHHHHHHHHHHTTEECCCB----TTEEEECCCTTCCHHHHHH--HHHHHHHHTSSGGG
T ss_pred cccHHHHHHHHHHCCCEEecc----CCEEEEECCCCCCHHHHHH--HHHHHHHHHHhhhc
Confidence 246788999999999988543 3799999999999999999 78888888766554
No 210
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.76 E-value=7.2e-17 Score=188.74 Aligned_cols=315 Identities=12% Similarity=0.073 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEc-CCCCcccHHHHHHCC--------
Q 001989 632 EMFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIP-VSAHGTNPATAAMCG-------- 701 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~-~~~Hg~~~~~a~~~G-------- 701 (985)
+...+++++++++++.+. ..++.+||++|+++++++++.++...|..++++||+. ..+||.........|
T Consensus 87 ~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~ 166 (448)
T 3dod_A 87 VPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVY 166 (448)
T ss_dssp HHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccc
Confidence 345678899999986543 3467789999999999888876544443346888874 456775543322211
Q ss_pred ----cEEEEEcCCCCCCC-----------CHHHHHHHHHhcCCCEEEEEEEcC--CCccccccC---HHHHHHHHHHcCC
Q 001989 702 ----MKIVSVGTDAKGNI-----------NIEELRKAAEANRDNLSTLMVTYP--STHGVYEEG---IDEICKIIHDNGG 761 (985)
Q Consensus 702 ----~~vv~v~~d~~g~i-----------D~e~L~~~i~~~~~~t~~Vvv~~p--n~~G~i~~d---i~eI~~la~~~ga 761 (985)
..+..+|.+...+. |+++|+++|+++.+++++|+++.+ +..|.+.++ +++|.++|+++|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~ 246 (448)
T 3dod_A 167 GPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDV 246 (448)
T ss_dssp ------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTC
T ss_pred cCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCC
Confidence 23445555432222 489999999744457888887765 456766412 9999999999999
Q ss_pred EEEEEccccccccCCCCC---C--ccCCcEEEeCCcccccccCCCCCC-ceEEEEEcccccCcCCCCccccCCCCCCCCC
Q 001989 762 QVYMDGANMNAQVGLTSP---G--YIGADVCHLNLHKTFCIPHGGGGP-GMGPIGVKKHLAPFLPSHPVVSTGGIPAPEK 835 (985)
Q Consensus 762 lliVD~a~~~~~~~l~~p---g--~~g~Di~~~s~hK~l~~p~g~GGP-g~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~ 835 (985)
++|+|++|. +++-.... . ...+|++++| |+|+ +|. .+|++++++++.+.+....... +
T Consensus 247 ~lI~DEv~~-g~g~~g~~~a~~~~~~~~di~t~s--K~l~-----~G~~~ig~v~~~~~~~~~~~~~~~~~--------~ 310 (448)
T 3dod_A 247 LMIVDEVAT-GFGRTGKMFACEHENVQPDLMAAG--KGIT-----GGYLPIAVTFATEDIYKAFYDDYENL--------K 310 (448)
T ss_dssp EEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGG-----TTSSCCEEEEEEHHHHHTTCSCGGGC--------C
T ss_pred EEEEecccc-CCCcccchhhhhhcCCCCCEEEec--cccc-----CCcCceEEEEECHHHHHHhhhccccC--------C
Confidence 999999874 22211111 1 1236888764 8874 353 7888998988776553210000 0
Q ss_pred CCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeee-cCCCCceeeEEEEEecCc
Q 001989 836 SQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILF-RGVNGTVAHEFIVDLRGL 912 (985)
Q Consensus 836 ~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~-~~~~~~~~~~~iv~~~~~ 912 (985)
.. ...+++.++++.++++.+.|..+..+++ .++..++.++++++|++ .+.... ....+.+ +.+.+..-
T Consensus 311 --~~-~~~~t~~~~~~~~aaa~aal~~~~~~~~---~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~g~~---~~~~~~~~ 381 (448)
T 3dod_A 311 --TF-FHGHSYTGNQLGCAVALENLALFESENI---VEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFM---CGAELVRS 381 (448)
T ss_dssp --CC-CCCCTTTTCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTE---EEEEECSB
T ss_pred --cc-cccCCCCcCHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHHHhcCCCeEEEEeeeEE---EEEEEccC
Confidence 00 0001122345555666667766544443 34555666777777764 222111 1001222 23343210
Q ss_pred ccc-CC----C-CHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccC
Q 001989 913 KNT-AG----I-EPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMG 977 (985)
Q Consensus 913 ~~~-~g----~-~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~ 977 (985)
... .. . ...++++.|.++|+.+... .+.+||+|+..+|++||++ +++.|+++++++...
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~----~~~iRi~~~~~~t~e~i~~--~l~~l~~~l~~~~~~ 446 (448)
T 3dod_A 382 KETKEPYPADRRIGYKVSLKMRELGMLTRPL----GDVIAFLPPLASTAEELSE--MVAIMKQAIHEVTSL 446 (448)
T ss_dssp TTTTBCCCGGGCHHHHHHHHHHHTTEECCEE----TTEEEECCCTTCCHHHHHH--HHHHHHHHHHHHHTT
T ss_pred cccccccchhhHHHHHHHHHHHHCCcEEecc----CCEEEEECCCCCCHHHHHH--HHHHHHHHHHHHhcc
Confidence 000 00 0 0468999999999987533 3799999999999999999 889999998876543
No 211
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.76 E-value=3.5e-17 Score=189.92 Aligned_cols=305 Identities=11% Similarity=0.061 Sum_probs=194.6
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCc---------cce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH
Q 001989 627 AQGYQEMFNNLGEWLCTITGFDS---------FSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT 696 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~~---------~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~ 696 (985)
.+|..++.+++.+++++.+|.+. ..+ +.+++++|+..++.++. .++++|+++++.|..+...
T Consensus 77 ~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~~~ 148 (425)
T 2r2n_A 77 SAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII--------NPGDNVLLDEPAYSGTLQS 148 (425)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC--------CCCCEEEEeCCCcHHHHHH
Confidence 36777788888888888888764 244 44555556644433321 4678999998877776677
Q ss_pred HHHCCcEEEEEcCCCCCCCCHHHHHHHHHhcC---------CCEEEEEE-EcC-CCcccccc--CHHHHHHHHHHcCCEE
Q 001989 697 AAMCGMKIVSVGTDAKGNINIEELRKAAEANR---------DNLSTLMV-TYP-STHGVYEE--GIDEICKIIHDNGGQV 763 (985)
Q Consensus 697 a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~---------~~t~~Vvv-~~p-n~~G~i~~--di~eI~~la~~~gall 763 (985)
++..|++++.+|++++| +|+++|++++++.+ +++++|++ .+| |++|.+.+ ++++|.++|+++|+++
T Consensus 149 ~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~l 227 (425)
T 2r2n_A 149 LHPLGCNIINVASDESG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLI 227 (425)
T ss_dssp HGGGTCEEEEECEETTE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHcCCEEEEeCcCCCC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence 78899999999987654 89999999997321 45777766 466 57898861 3559999999999999
Q ss_pred EEEcccccc-ccCC--CCC---CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCC
Q 001989 764 YMDGANMNA-QVGL--TSP---GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQ 837 (985)
Q Consensus 764 iVD~a~~~~-~~~l--~~p---g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~ 837 (985)
++|+++... ..+- ... ...+.++++.|++|+|+ | |.++|++++++++.+.+.... . .
T Consensus 228 i~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~----GlRiG~~~~~~~l~~~l~~~~-~-----------~ 290 (425)
T 2r2n_A 228 IEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-S----GLRIGFLTGPKPLIERVILHI-Q-----------V 290 (425)
T ss_dssp EEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-S----TTCCEEEEEEHHHHHHHHHHH-H-----------T
T ss_pred EEECCcccccCCCCCCCCccccCCCCCEEEEccchhhcc-C----ccceEEEecCHHHHHHHHHHH-H-----------H
Confidence 999998521 1111 011 12234688899999984 3 567899999877654432110 0 0
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHHhcHH----HHHHHHHHHHHHHHHHHHHhhcc-CCe-eecCCCCceeeEEEEEecC
Q 001989 838 PLGTIAAAPWGSALILPISYTYIAMMGSK----GLTEASKIAILNANYMAKRLEKH-YPI-LFRGVNGTVAHEFIVDLRG 911 (985)
Q Consensus 838 ~~~~i~s~~~g~~~~~~~a~a~l~~lg~e----Gl~~~~~~~~~~a~~l~~~L~~g-~~l-~~~~~~~~~~~~~iv~~~~ 911 (985)
.+.+. + .....++.++|..++.+ .+++..++..++++++.+.|++. .++ .+..+.+..+ +.++++.
T Consensus 291 ~~~~~--~----~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~--~~~~~~~ 362 (425)
T 2r2n_A 291 STLHP--S----TFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMF--LWIKVKG 362 (425)
T ss_dssp TTCSS--C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSE--EEEEETT
T ss_pred hcCCC--C----HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEE--EEEEeCC
Confidence 01111 1 12222333455544322 24444555677788888888762 232 1222223322 3456542
Q ss_pred ccccCCCCHHH-HHHHHHHCCCccCCC-CCC-----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 912 LKNTAGIEPED-VAKRLMDYGFHGPTM-SWP-----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 912 ~~~~~g~~~~~-v~~~L~~~Gi~~~~~-~~p-----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+.+..+ +.+.|.++||.+... .+. ..+++||+++. .+++||++ +++.|++++++
T Consensus 363 -----~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~--~~~~l~~~l~~ 423 (425)
T 2r2n_A 363 -----INDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDV--AFQVLAQLIKE 423 (425)
T ss_dssp -----CSCCHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHH--HHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHH--HHHHHHHHHHH
Confidence 234445 688899999987532 121 13789999984 59999999 77888887764
No 212
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.76 E-value=1e-17 Score=194.55 Aligned_cols=324 Identities=10% Similarity=0.107 Sum_probs=202.4
Q ss_pred cccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHH
Q 001989 591 MIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 591 ~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~ 670 (985)
...||++++.+..+...+......+...+++ ..++.+.+++++......++++||++|++++++++|.
T Consensus 98 ~~~lGH~hp~v~~Av~~q~~~~~~~~~~~~~------------~~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~ 165 (454)
T 4ao9_A 98 AGVYGHSAPEIRDAVIEAMQGGINLTGHNLL------------EGRLARLICERFPQIEQLRFTNSGTEANLMALTAALH 165 (454)
T ss_dssp TTTTCSCCHHHHHHHHHHHHTCSCCCSEESS------------HHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHH
T ss_pred hhcccCCCHHHHHHHHHHHhcCCCccCCcHH------------HHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHh
Confidence 3457888777766544443221122222222 2367788888875333456779999999999999988
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHH-----HCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCcc
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAA-----MCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHG 743 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~-----~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G 743 (985)
|. ++++||. ...+||....... ........+|.+ |++++++.++++.+++++|+++-. +..|
T Consensus 166 ~t------gr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n-----d~~~l~~~l~~~~~~iAavIvEPv~g~~G 234 (454)
T 4ao9_A 166 FT------GRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN-----DAQTARAQIERHGPEIAVVLVEPMQGASG 234 (454)
T ss_dssp HH------TCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT-----CHHHHHHHHHHTGGGEEEEEECSEESTTT
T ss_pred cc------cCCeEEEEeCCcCCccccccccccCccCCCCcccCCCc-----hHHHHHHHHhhcCCceEEEEeccccCCCC
Confidence 73 4566765 6678885432211 123456667764 899999999877778999988642 4567
Q ss_pred ccccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCC---cc--CCcEEEeCCcccccccCCCCCCceEEEEEcccc
Q 001989 744 VYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTSPG---YI--GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHL 815 (985)
Q Consensus 744 ~i~~d---i~eI~~la~~~galliVD~a~~~~~~~l~~pg---~~--g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l 815 (985)
++.++ +++|.++|+++|++||+|+++. +- ....+ .+ -+|+++++ |.++ +|.| +|.+.+++++
T Consensus 235 ~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t-GR--~G~~~a~e~~gv~PDi~t~g--K~lg----gG~P-iga~~~~~ei 304 (454)
T 4ao9_A 235 CIPGQPDFLQALRESATQVGALLVFDEVMT-SR--LAPHGLANKLGIRSDLTTLG--KYIG----GGMS-FGAFGGRADV 304 (454)
T ss_dssp CEECCHHHHHHHHHHHHHHTCEEEEECTTG-GG--GSTTCHHHHHTCCCSEEEEE--GGGG----TTSS-CEEEEECHHH
T ss_pred ccCCchhhHHHHHHHHhhcCCEEEEECCCc-CC--CccccchhccCCCCcEEEec--cccC----CCCc-ceeeeeHHHH
Confidence 77622 9999999999999999999884 21 11111 11 26998764 7764 3444 6677778777
Q ss_pred cCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCe
Q 001989 816 APFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPI 892 (985)
Q Consensus 816 ~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l 892 (985)
++.+.... + .....+++.|++++++++.+.|..+..+++ .++..++.++|+++|++. .++
T Consensus 305 ~~~~~~~~-~-------------~~~h~~T~~gnPla~AAala~L~~l~~~~~---~~~~~~~g~~l~~~L~~l~~~~~~ 367 (454)
T 4ao9_A 305 MALFDPRT-G-------------PLAHSGTFNNNVMTMAAGYAGLTKLFTPEA---AGALAERGEALRARLNALCANEGV 367 (454)
T ss_dssp HGGGCTTT-C-------------SCCCCCTTTTCHHHHHHHHHHHHHTSCHHH---HHHHHHHHHHHHHHHHHHHHHHTB
T ss_pred HHHHhhcc-C-------------CccccCCCCCCHHHHHHHHHHHHHHhccCh---hHHHHHHHHHHHHHHHHHHhhCCC
Confidence 66553210 0 001123456688888888899998876554 446677888898888651 222
Q ss_pred e--ecCCCCceeeEEEEEecC-----ccccCCCC---HHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHH
Q 001989 893 L--FRGVNGTVAHEFIVDLRG-----LKNTAGIE---PEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVM 962 (985)
Q Consensus 893 ~--~~~~~~~~~~~~iv~~~~-----~~~~~g~~---~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~ 962 (985)
. +.+. +.. +-+.+.. .......+ ...+...|.++||++.+. +.+ .++..+|++|||+
T Consensus 368 ~~~vrg~-G~m---~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~-----~~~--~~s~~~T~~dId~-- 434 (454)
T 4ao9_A 368 AMQFTGI-GSL---MNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPR-----GFV--VLSLPLTDADIDR-- 434 (454)
T ss_dssp SCEEEEE-TTE---EEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTT-----CEE--ECCTTCCHHHHHH--
T ss_pred CEEEeee-ceE---EEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCC-----CCE--EEeCCCCHHHHHH--
Confidence 1 1111 111 1222210 00000112 235667788999987432 233 3455589999999
Q ss_pred ccCChhHHHHhhccC
Q 001989 963 LSSPSEKKLHRLKMG 977 (985)
Q Consensus 963 ~~~~l~~~~~~~~~~ 977 (985)
+++++++++.++.+.
T Consensus 435 ~l~al~~~l~~~~a~ 449 (454)
T 4ao9_A 435 YVAAIGSFIGGHGAL 449 (454)
T ss_dssp HHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHhcccc
Confidence 889999999987763
No 213
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.76 E-value=4.2e-17 Score=189.99 Aligned_cols=268 Identities=19% Similarity=0.186 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch--
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK-- 289 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~-- 289 (985)
...++++.+|+++|.+ ...++.+|++++.+++.++ . ++||+||+++..|+++...++..++..|+++++++.+
T Consensus 115 ~~~~l~~~lA~l~g~~--~~v~~~sG~~Ai~~al~~l-~--~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~ 189 (445)
T 1qgn_A 115 TTVVLEEKISALEGAE--STLLMASGMCASTVMLLAL-V--PAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADV 189 (445)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHH-S--CSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCH
T ss_pred HHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHH-h--CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCH
Confidence 3556788999999987 3556677777666666554 2 3789999999999998888776566789999999764
Q ss_pred -hhhc-cCCCE-eEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCC
Q 001989 290 -DIDY-KSGDV-CGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMG 364 (985)
Q Consensus 290 -~l~~-l~~~t-~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~ 364 (985)
++++ ++++| ++|++.+| |.+|.+.|+++|+++||++|++++|| +.++.+....+.++|+|+++.|+ |.++
T Consensus 190 ~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD-~a~~~~~~~~~~~~g~Div~~S~sK~~g---- 264 (445)
T 1qgn_A 190 GALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCID-GTFATPLNQKALALGADLVLHSATKFLG---- 264 (445)
T ss_dssp HHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEE-CTTTCTTTCCTTTTTCSEEEECTTTTTT----
T ss_pred HHHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEE-CCCcccccCCccccCCEEEEECCccccc----
Confidence 5555 77788 99999998 78999999999999999999999995 45555555567789999999998 6554
Q ss_pred CCCCc---EEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcc
Q 001989 365 YGGPH---AAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE 441 (985)
Q Consensus 365 ~GGP~---~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~ 441 (985)
|++ +|++++++++++.+... ++.-|+.. .++.+ |+...+.+
T Consensus 265 --g~gd~~~G~l~~~~~l~~~l~~~-------------------------~~~~g~~~----~~~~a-----~~~~~~l~ 308 (445)
T 1qgn_A 265 --GHNDVLAGCISGPLKLVSEIRNL-------------------------HHILGGAL----NPNAA-----YLIIRGMK 308 (445)
T ss_dssp --CSSSCCCEEEEECHHHHHHHHHH-------------------------HHHHCCCC----CHHHH-----HHHHHHGG
T ss_pred --ccccceEEEEEECHHHHHHHHHH-------------------------HHHhCCCC----CHHHH-----HHHHHhHH
Confidence 333 68999998877654100 00011100 11111 11122334
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCe-EEcCC-----C-----------CcceEEEecCC----HHHHHHHHHHcCceee
Q 001989 442 GLKTIAQRVHGLAGTFALGLKKLGTV-EVQGL-----P-----------FFDTVKVKCAD----AHAIASAAYKIEMNLR 500 (985)
Q Consensus 442 Gl~~i~~~~~~~a~~l~~~L~~~g~~-~~~~~-----~-----------~~~~~~~~~~~----~~~v~~~L~~~GI~~~ 500 (985)
.+....++..+++.++.+.|++.+++ ++..+ + ....+.|.+++ +..+.+.|...++.++
T Consensus 309 ~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~~i~~s 388 (445)
T 1qgn_A 309 TLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPS 388 (445)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCceEecc
Confidence 45556667778899999999988547 44321 1 23457777764 3334444432233211
Q ss_pred ------e---------------------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 501 ------V---------------------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 501 ------~---------------------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. +.++.||+|++ .||+|++++.|.+
T Consensus 389 ~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~ 440 (445)
T 1qgn_A 389 FGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQ 440 (445)
T ss_dssp CCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHH
T ss_pred CCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHH
Confidence 0 12478999998 4678888888763
No 214
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.76 E-value=1.6e-17 Score=191.23 Aligned_cols=163 Identities=18% Similarity=0.202 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH----HHCCcEEEEE
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA----AMCGMKIVSV 707 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a----~~~G~~vv~v 707 (985)
....++++++++++|.+ ..+.+++|++|+..++.++. .++++||++...|+.+.... +..|++++.+
T Consensus 64 ~~~~~l~~~la~~~g~~-~~i~~~sG~~a~~~~l~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v 134 (398)
T 2rfv_A 64 PTTDALEKKLAVLERGE-AGLATASGISAITTTLLTLC--------QQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFV 134 (398)
T ss_dssp HHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEE
T ss_pred hHHHHHHHHHHHHhCCC-cEEEECCHHHHHHHHHHHHh--------CCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEe
Confidence 44668899999999987 45666778877755544331 36789999988887665544 6789999999
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcE
Q 001989 708 GTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADV 786 (985)
Q Consensus 708 ~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di 786 (985)
|.+ |+++|+++++ +++++|++++| |++|.+. |+++|+++|+++|+++|+|+++..+. +..+..+++|+
T Consensus 135 ~~~-----d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~De~~~~~~--~~~~~~~~~di 203 (398)
T 2rfv_A 135 DAA-----KPEEIRAAMR---PETKVVYIETPANPTLSLV-DIETVAGIAHQQGALLVVDNTFMSPY--CQQPLQLGADI 203 (398)
T ss_dssp CTT-----SHHHHHHHCC---TTEEEEEEESSBTTTTBCC-CHHHHHHHHHHTTCEEEEECTTTCTT--TCCGGGGTCSE
T ss_pred CCC-----CHHHHHHhcC---CCCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEECCCcccc--cCCchhhCCcE
Confidence 974 8999999997 78999999998 5799998 89999999999999999999985332 23455678999
Q ss_pred EEeCCcccccccCCCCCCceEEEEEcccccC
Q 001989 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP 817 (985)
Q Consensus 787 ~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~ 817 (985)
++.|+||+|+.| |++-+|++++++++.+
T Consensus 204 ~~~s~sK~~~~~---g~~~~G~~~~~~~~~~ 231 (398)
T 2rfv_A 204 VVHSVTKYINGH---GDVIGGIIVGKQEFID 231 (398)
T ss_dssp EEEETTTTTTCS---SCCCCEEEEECHHHHH
T ss_pred EEEeCcccccCC---CCceEEEEEECHHHHH
Confidence 999999998533 2222499999876653
No 215
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.76 E-value=1.2e-16 Score=183.21 Aligned_cols=306 Identities=15% Similarity=0.121 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
..++++.+++++|.+. .+++++|++|+..++.+++. ...++..++++|+++...|..+...+...|++++.++++++
T Consensus 36 ~~~l~~~la~~~~~~~-~i~~~sGt~a~~~al~~~~~-~~~~~~~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 113 (390)
T 3b8x_A 36 VKQYETQFAKTFGSKY-AVMVSSGSTANLLMIAALFF-TKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDINT 113 (390)
T ss_dssp HHHHHHHHHHHHTCSE-EEEESCHHHHHHHHHHHTTS-SSSCSCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHHCCCc-EEEECCHHHHHHHHHHHHHh-hhhcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCccc
Confidence 5578899999999874 46677888777555544310 00001246789999998887777777889999999999876
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCC--cEEEeC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGA--DVCHLN 790 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~--Di~~~s 790 (985)
+.+|+++|+++++ ++|++|++++ .+|... |+++|.++|+++|+++|+|++|..+... ....+|. |+.+++
T Consensus 114 ~~~d~~~l~~~i~---~~~~~v~~~~--~~g~~~-~~~~i~~l~~~~~~~li~D~a~~~g~~~--~~~~~g~~~~~~~~s 185 (390)
T 3b8x_A 114 LNIDIESLKEAVT---DSTKAILTVN--LLGNPN-NFDEINKIIGGRDIILLEDNCESMGATF--NNKCAGTFGLMGTFS 185 (390)
T ss_dssp CSBCHHHHHHHCC---TTEEEEEEEC--GGGCCC-CHHHHHHHHTTSCCEEEEECTTCTTCEE--TTEETTSSSSEEEEE
T ss_pred cCcCHHHHHHHhC---cCCeEEEEEC--CccChh-hHHHHHHHHHHcCCEEEEECcCcccCEE--CCcccccccceEEEE
Confidence 8999999999997 7899999875 567777 8999999999999999999999643321 2223444 666544
Q ss_pred CcccccccCCCCCCceEEEEEcc-cccCcCCC-CccccCCC------------C--CCC--CCCCCCCCCCCcchhhhHH
Q 001989 791 LHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPS-HPVVSTGG------------I--PAP--EKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 791 ~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~-~~~g~~~~------------~--~~~--~~~~~~~~i~s~~~g~~~~ 852 (985)
|..++.+. +|.| |++++++ .+.+.+.. ...|...+ . ..+ ..+....+... ....
T Consensus 186 --~~~~k~~~-~g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~ 257 (390)
T 3b8x_A 186 --SFYSNHIA-TMEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRP----LEMS 257 (390)
T ss_dssp --CCTTSSSC-SSSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCC----CHHH
T ss_pred --ccCCCCCc-cCCc-eEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCc----CHHH
Confidence 22222211 2334 8888875 44321110 00110000 0 000 00000001101 1222
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCC-CceeeEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVN-GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~-~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~G 931 (985)
++.+.+.+ +.+.+..++..++++++.++|++..++...++. ...++.+.+.++. ..+.+.+++.+.|.++|
T Consensus 258 aa~~l~~l-----~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~l~~~L~~~g 329 (390)
T 3b8x_A 258 GAIGIEQL-----KKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKK---DSGVIRKQLVENLNSAG 329 (390)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECT---TSCCCHHHHHHHHHHTT
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecC---cCcccHHHHHHHHHHCC
Confidence 22222222 445666777888999999999863233222211 1222334445431 11457889999999999
Q ss_pred CccCCC------CC-CC-------------------CCEEEEeccCCCCHHHHHHHHccCCh
Q 001989 932 FHGPTM------SW-PV-------------------PGTLMIEPTESESKSWTGIVMLSSPS 967 (985)
Q Consensus 932 i~~~~~------~~-p~-------------------~~~lris~t~~~t~eeId~~~~~~~l 967 (985)
|.++.. .. |. .+.||++++..+|++|||+ ++++|
T Consensus 330 I~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~--i~~~l 389 (390)
T 3b8x_A 330 IECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDY--LREVL 389 (390)
T ss_dssp BCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHH--HHHHT
T ss_pred CCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHH--HHHhh
Confidence 987531 12 20 1369999999999999999 44443
No 216
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.75 E-value=7.8e-18 Score=191.44 Aligned_cols=293 Identities=16% Similarity=0.089 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
..++++.+++++|.+. .+++++|++|++.++.+++ ..++++|+++...|......+...|++++.++++++
T Consensus 37 ~~~l~~~la~~~~~~~-~~~~~sGt~al~~al~~~~-------~~~gd~Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 108 (367)
T 3nyt_A 37 VTELEDRLADFVGAKY-CISCANGTDALQIVQMALG-------VGPGDEVITPGFTYVATAETVALLGAKPVYVDIDPRT 108 (367)
T ss_dssp HHHHHHHHHHHHTCSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHhCCCc-EEEeCCHHHHHHHHHHHhC-------CCCcCEEEECCCccHHHHHHHHHcCCEEEEEecCCcc
Confidence 5578899999999874 4667788887765555432 247889999998888887778889999999999876
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CCCCccCCcEEEeCC
Q 001989 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TSPGYIGADVCHLNL 791 (985)
Q Consensus 713 g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l-~~pg~~g~Di~~~s~ 791 (985)
+.+|+++|+++++ +++++|++++ .+|... |+++|.++|+++|+++|+|++|..+...- ...+.++ |++++|+
T Consensus 109 ~~~d~~~l~~~i~---~~~~~v~~~~--~~G~~~-~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~-di~~~Sf 181 (367)
T 3nyt_A 109 YNLDPQLLEAAIT---PRTKAIIPVS--LYGQCA-DFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLS-TVACTSF 181 (367)
T ss_dssp CSBCGGGTGGGCC---TTEEEECCBC--GGGCCC-CHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTSSS-SEEEEEC
T ss_pred CCcCHHHHHHhcC---cCCcEEEeeC--CccChh-hHHHHHHHHHHcCCEEEEECccccCCeECCeeccCCC-CEEEEEC
Confidence 8899999999997 7899888543 679888 89999999999999999999986433210 1123344 9999995
Q ss_pred --cccccccCCCCCCceEEEEEc-ccccCcCCC-CccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 792 --HKTFCIPHGGGGPGMGPIGVK-KHLAPFLPS-HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 792 --hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~-~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
||+++.+ |. +|+++++ +++.+.+.. ...|..... .+ ...+. +.. .....++.+.+.+ +.
T Consensus 182 ~~~K~l~~~----g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~-~~-~~~g~-~~~----~~~~~aa~~~~~l-----~~ 244 (367)
T 3nyt_A 182 FPSAPLGCY----GD-GGAIFTNDDELATAIRQIARHGQDRRY-HH-IRVGV-NSR----LDTLQAAILLPKL-----EI 244 (367)
T ss_dssp CTTSSSCCS----SC-CEEEEESCHHHHHHHHHHTBTTEEETT-EE-CSCCC-BCC----CCHHHHHHHHHHH-----HT
T ss_pred CCCCcCCCc----Cc-eeEEEeCCHHHHHHHHHHHhcCCCcCc-ee-eccCc-CCC----ccHHHHHHHHHHH-----HH
Confidence 8988421 22 6677775 444332211 001110000 00 00000 111 1222222222222 23
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-cCCeeecCCC-CceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC-C----
Q 001989 868 LTEASKIAILNANYMAKRLEK-HYPILFRGVN-GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW-P---- 940 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~-~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~-p---- 940 (985)
+.+..++..++++++.+.|++ ++.+....+. ...++.+.+.++ +.+++.+.|.++||.+..... |
T Consensus 245 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~L~~~GI~~~~~~~~~~~~~ 316 (367)
T 3nyt_A 245 FEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD--------NRESVQASLKAAGVPTAVHYPIPLNKQ 316 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS--------SHHHHHHHHHHHTCCCBCSCSSCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC--------CHHHHHHHHHHCCCceeccCCCccccC
Confidence 455566677888899999986 3333211111 122223444432 578899999999997653211 1
Q ss_pred ----------------CCCEEEEeccCCCCHHHHHHHHccCChh
Q 001989 941 ----------------VPGTLMIEPTESESKSWTGIVMLSSPSE 968 (985)
Q Consensus 941 ----------------~~~~lris~t~~~t~eeId~~~~~~~l~ 968 (985)
....|++++....|++|||+ +++.++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~--v~~~~~ 358 (367)
T 3nyt_A 317 PAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKI--ICAALT 358 (367)
T ss_dssp GGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHH--HHHHHH
T ss_pred hhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHH--HHHHHH
Confidence 12578999999999999999 555544
No 217
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.75 E-value=8.1e-17 Score=185.01 Aligned_cols=275 Identities=12% Similarity=0.081 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHh-hhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 210 LESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCN-NIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 210 l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~-~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
.+...++++.+|+++|.+ .++.+ .+|+.+..+++.++ +. .+||+|+++...|+++...++. .|++++.++.
T Consensus 90 ~~~~~~l~~~la~~~~~~-~~i~~-~sG~~a~~~~~~~l~~~--~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~v~~ 161 (401)
T 2bwn_A 90 TAYHRRLEAEIAGLHQKE-AALVF-SSAYNANDATLSTLRVL--FPGLIIYSDSLNHASMIEGIKR----NAGPKRIFRH 161 (401)
T ss_dssp BHHHHHHHHHHHHHTTCS-EEEEE-SCHHHHHHHHHHHHHHH--STTCEEEEETTCCHHHHHHHHH----SCCCEEEECT
T ss_pred hHHHHHHHHHHHHHhCCC-cEEEE-CCcHHHHHHHHHHHhcC--CCCCEEEECchhhHHHHHHHHH----cCCeEEEEcC
Confidence 355677899999999974 44545 44444555544332 22 3789999999999999998853 5788888865
Q ss_pred ---hhhhc-cC----CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCC-----cc----cce
Q 001989 289 ---KDIDY-KS----GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPG-----EL----GAD 350 (985)
Q Consensus 289 ---~~l~~-l~----~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~-----~~----GaD 350 (985)
+++++ +. +++++|++.+| |++|.+.|+++|.++||++|+++++| +.++.|.+.+.+ .+ +.|
T Consensus 162 ~d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-ea~~~g~~~~~g~~~~~~~~~~~~~~ 240 (401)
T 2bwn_A 162 NDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYID-EVHAVGMYGPRGAGVAERDGLMHRID 240 (401)
T ss_dssp TCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEE-CTTTTTTSSTTSCCHHHHHTCGGGCS
T ss_pred CCHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEe-ccccccccCCCCceeeeccCccccCc
Confidence 35554 43 57899999987 78999999999999999999999995 355544432221 12 358
Q ss_pred EEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHH
Q 001989 351 IVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLAN 429 (985)
Q Consensus 351 i~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~ 429 (985)
++++|. |.|+. || |++..++++.+.+.. .....+...+|++ ....++
T Consensus 241 i~~~s~sK~~~~------~G-G~~~~~~~~~~~l~~---------------------~~~~~~~~~~~~~----~~~~a~ 288 (401)
T 2bwn_A 241 IFNGTLAKAYGV------FG-GYIAASARMVDAVRS---------------------YAPGFIFSTSLPP----AIAAGA 288 (401)
T ss_dssp EEEEESSSTTCS------CC-EEEEECHHHHHHHHH---------------------HCHHHHTSBCCCH----HHHHHH
T ss_pred EEEeechhhccC------CC-CEEecCHHHHHHHHH---------------------hCcCceecCCCCH----HHHHHH
Confidence 999887 88753 33 788888776654310 0000111112211 222233
Q ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHH-HcCceeeeec--
Q 001989 430 MAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAY-KIEMNLRVVD-- 503 (985)
Q Consensus 430 ~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~-~~GI~~~~~~-- 503 (985)
.+++ .++...|++++.++..++.+++.+.|+++| +++..+ ..+.+.+..+. +.++.+.|. ++||.+....
T Consensus 289 ~~al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~ 364 (401)
T 2bwn_A 289 QASI--AFLKTAEGQKLRDAQQMHAKVLKMRLKALG-MPIIDH-GSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFP 364 (401)
T ss_dssp HHHH--HHHTSHHHHHHHHHHHHHHHHHHHHHHHHT-CCBCCC-SSSCEEEECCCHHHHHHHHHHHHHHHCEECCEECTT
T ss_pred HHHH--HHHHhcccHHHHHHHHHHHHHHHHHHHHCC-CcccCC-CCCeEEEEeCChHHHHHHHHHHHhcCCEEEeecCCC
Confidence 3333 566666789999999999999999999886 777642 22346666653 678999996 7899885431
Q ss_pred --C---CeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 504 --S---NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 --~---~~lris~t~~~t~edId~li~aL~~ 529 (985)
+ +.+|++++.++|++|+++++++|.+
T Consensus 365 ~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~ 395 (401)
T 2bwn_A 365 TVPRGTERLRFTPSPVHDLKQIDGLVHAMDL 395 (401)
T ss_dssp TSCTTCCEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEEeeCCCCHHHHHHHHHHHHH
Confidence 1 4899999999999999999999974
No 218
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.75 E-value=1.6e-16 Score=182.34 Aligned_cols=274 Identities=15% Similarity=0.122 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
...++++.+|+++|.+ ...++.+|++++++++.++ . ++||+|++++..|+++...+..+++..|++++.++.
T Consensus 60 ~~~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~~~-~--~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~ 134 (389)
T 3acz_A 60 TVEQFEEMVCSIEGAA--GSAAFGSGMGAISSSTLAF-L--QKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDV 134 (389)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHTTT-C--CTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTCH
T ss_pred HHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHH-h--CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCH
Confidence 3456788999999987 4667788887666655443 2 378999999999999988887656678999999875
Q ss_pred hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCC
Q 001989 289 KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 289 ~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
+++++ +++++++|++++| |.+|.+.|+++|+++||++|++++|| +.++.+....|.++|+|+++.|. |.|++|
T Consensus 135 ~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD-~~~~~~~~~~~~~~~~di~~~S~sK~~~~~--- 210 (389)
T 3acz_A 135 EKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVD-ATFTSPCFLKPLELGADIALHSVSKYINGH--- 210 (389)
T ss_dssp HHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEE-CTTTCTTTCCGGGTTCSEEEEETTTTTTCS---
T ss_pred HHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEE-CCCccccccCccccCCeEEEECChhhccCC---
Confidence 45666 7889999999998 78999999999999999999999995 34454444455678999999998 777643
Q ss_pred CCCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHH
Q 001989 366 GGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLK 444 (985)
Q Consensus 366 GGP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~ 444 (985)
|++-+|++++++ ++.+++.... +...++. +++.+. ++ ..+.+.++
T Consensus 211 ~~~~~G~v~~~~~~~~~~l~~~~------------------------~~~g~~~-----~~~~~~-~~----~~~l~~l~ 256 (389)
T 3acz_A 211 GDVIGGVSSAKTAEDIATIKFYR------------------------KDAGSLM-----APMDAF-LC----ARGMKTLP 256 (389)
T ss_dssp SCCCCEEEEESSHHHHHHHHHHH------------------------HHHCCCC-----CHHHHH-HH----HHHHTTHH
T ss_pred CCceeEEEEECcHHHHHHHHHHH------------------------HhcCCCC-----CHHHHH-HH----HcCccHHH
Confidence 222248999988 7766541100 0000110 111111 11 11113455
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEc--CC----C-----------CcceEEEecCCHHHHHHHHHHcCceeee------
Q 001989 445 TIAQRVHGLAGTFALGLKKLGTVEVQ--GL----P-----------FFDTVKVKCADAHAIASAAYKIEMNLRV------ 501 (985)
Q Consensus 445 ~i~~~~~~~a~~l~~~L~~~g~~~~~--~~----~-----------~~~~~~~~~~~~~~v~~~L~~~GI~~~~------ 501 (985)
...++..+++..+.+.|++.+.++-+ .. + ....+.|.+++..++.+.|.+.||.+..
T Consensus 257 ~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~l~~~~i~~~~~s~G~~ 336 (389)
T 3acz_A 257 IRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKSFEAAKKLMEHLKVCTLAVSLGCV 336 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSHHHHHHHHTTCSSSEEBSCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECCHHHHHHHHHhCCCcEECcCCCCc
Confidence 56677778888888888876433321 10 1 1234667665555666777777875432
Q ss_pred ------------------------ecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 502 ------------------------VDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 502 ------------------------~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
+.++.+|+|++..++++.|+.|.++|.
T Consensus 337 ~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~~~~li~~l~~al~ 387 (389)
T 3acz_A 337 DTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQALE 387 (389)
T ss_dssp SCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHT
T ss_pred ccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHh
Confidence 114789999999999999999999886
No 219
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.75 E-value=1.7e-17 Score=205.19 Aligned_cols=280 Identities=10% Similarity=0.014 Sum_probs=196.5
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC---
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD--- 287 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~--- 287 (985)
..+.+.|+.+++++|.+.+ +.+++|+|++..++++++. ++||+||+++.+|+++..+++. .|+++++++
T Consensus 205 g~v~~~ee~la~l~G~d~~-i~~~~Gtt~a~~~~i~al~---~~GD~Vlv~~~~h~s~~~~~~~----~G~~~v~v~~~~ 276 (755)
T 2vyc_A 205 GAFGESEKYAARVFGADRS-WSVVVGTSGSNRTIMQACM---TDNDVVVVDRNCHKSIEQGLML----TGAKPVYMVPSR 276 (755)
T ss_dssp HHHHHHHHHHHHHHTCSEE-EEESSHHHHHHHHHHHHHC---CTTCEEEEESSCCHHHHHHHHH----HCCEEEEECCCB
T ss_pred cHHHHHHHHHHHHhCCCce-EEECCcHHHHHHHHHHHhc---CCCCEEEECCCchHHHHHHHHH----cCCEEEEEeCCC
Confidence 4678899999999999853 4566777777777777652 3899999999999999998754 377777764
Q ss_pred ---------------chhhhc-cC--CCEe--------EEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccC-
Q 001989 288 ---------------LKDIDY-KS--GDVC--------GVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTI- 340 (985)
Q Consensus 288 ---------------~~~l~~-l~--~~t~--------~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~- 340 (985)
+++|++ +. ++++ +|++++||++|.+.|+++|+++||++|++++||. .++.++
T Consensus 277 ~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~pn~~G~v~dl~~I~~ia~~~~~~livDe-A~~~~~~ 355 (755)
T 2vyc_A 277 NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDE-AWYGYAR 355 (755)
T ss_dssp CTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESSCTTSEEECHHHHHHHHTTTCSEEEEEC-TTCTTGG
T ss_pred CccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECCCCCceecCHHHHHHHHHHcCCEEEEEC-cCchhcc
Confidence 334544 42 3454 8899999999999999999999999999999953 333211
Q ss_pred C------CCCCccc--ceE------EEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecc
Q 001989 341 L------KPPGELG--ADI------VVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQ 405 (985)
Q Consensus 341 l------~~~~~~G--aDi------~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~ 405 (985)
. ..+. +| +|+ +++|+ |+|++| +++|+++++++. +.+ + ...+
T Consensus 356 ~~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L~g~-----~~g~~i~~~~~~-~~i---------~---~~~~----- 411 (755)
T 2vyc_A 356 FNPIYADHYAM-RGEPGDHNGPTVFATHSTHKLLNAL-----SQASYIHVREGR-GAI---------N---FSRF----- 411 (755)
T ss_dssp GCGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSSSCC-----TTCEEEEEECCB-TCC---------C---HHHH-----
T ss_pred cCcccCCcchh-cCCcCCccCCCeEEEECccccccCc-----CCeeeeeecCcc-ccc---------C---HHHH-----
Confidence 1 1122 67 887 88888 766543 236788887651 001 0 0000
Q ss_pred cccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCC---------eEEcCCC---
Q 001989 406 TREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGT---------VEVQGLP--- 473 (985)
Q Consensus 406 tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~---------~~~~~~~--- 473 (985)
.....+.+.+|+|+ ..+.++.+++ .++..+|.+++.++..+++++++++|+++++ ++++.+.
T Consensus 412 -~~~~~~~~s~sp~~---~~iaal~aA~--~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~ 485 (755)
T 2vyc_A 412 -NQAYMMHATTSPLY---AICASNDVAV--SMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVT 485 (755)
T ss_dssp -HHHHHHTSCSSCCH---HHHHHHHHHH--HHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEE
T ss_pred -HHHHHHhCCCCHHH---HHHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhcc
Confidence 00011123344443 4455555554 5666666678899999999999999998765 6655321
Q ss_pred ----------------------------------------C----c--ceEEEecC-----------C--HHHHHHHHHH
Q 001989 474 ----------------------------------------F----F--DTVKVKCA-----------D--AHAIASAAYK 494 (985)
Q Consensus 474 ----------------------------------------~----~--~~~~~~~~-----------~--~~~v~~~L~~ 494 (985)
. + ..++|..+ + +.++.+.|.+
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~ 565 (755)
T 2vyc_A 486 DPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGR 565 (755)
T ss_dssp CTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHT
T ss_pred ccccccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHH
Confidence 0 1 13566665 2 4899999999
Q ss_pred cCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 495 IEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 495 ~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+||.++....+.+|+++|..+|++++++|+++|.+
T Consensus 566 ~gI~~e~~~~~~v~~~~~~g~t~~~~~~l~~al~~ 600 (755)
T 2vyc_A 566 HGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCS 600 (755)
T ss_dssp TTCCCSEECSSEEEEECCTTCCTTTTHHHHHHHHH
T ss_pred CCCEEeecCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999877789999999999999999999999974
No 220
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.75 E-value=5.3e-18 Score=195.33 Aligned_cols=297 Identities=13% Similarity=0.065 Sum_probs=186.5
Q ss_pred hHHHHHHHHHHHHHHHhCCC--c-cc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 629 GYQEMFNNLGEWLCTITGFD--S-FS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 629 G~~~~~~e~~~~la~l~G~~--~-~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
|..++.+++.+++.+.+|.+ . .. ++.++|++++..++.++. .++++|+++.+.|..+...++..|.++
T Consensus 62 g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~ 133 (410)
T 3e2y_A 62 GHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLV--------DPGDEVIIMVPFYDCYEPMVRMAGAVP 133 (410)
T ss_dssp CCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCEE
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhc--------CCCCEEEEeCCCchhhHHHHHHcCCEE
Confidence 44455555666666666643 3 33 445566666654444331 467899998888888888888899999
Q ss_pred EEEcCC-----------CCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEcccc
Q 001989 705 VSVGTD-----------AKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANM 770 (985)
Q Consensus 705 v~v~~d-----------~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~ 770 (985)
+.+|++ .++.+|+++|+++++ +++++|++++|+ ++|.+. .++++|+++|+++|+++|+|+++.
T Consensus 134 ~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~ 210 (410)
T 3e2y_A 134 VFIPLRSKPTDGMKWTSSDWTFDPRELESKFS---SKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYE 210 (410)
T ss_dssp EEEECEECCCCSSCCBGGGEECCHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred EEEeccccccccccccccCCcCCHHHHHhhcC---CCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhh
Confidence 999886 245689999999987 789999999995 699983 279999999999999999999984
Q ss_pred cc-ccCCC--C----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCC
Q 001989 771 NA-QVGLT--S----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIA 843 (985)
Q Consensus 771 ~~-~~~l~--~----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~ 843 (985)
.. ..+-. . +...+.++++.|++|+|+. +|.++|++++++++.+.+.... ...+.+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~------------~~~~~~~- 273 (410)
T 3e2y_A 211 WLVYTGHTHVKIATLPGMWERTITIGSAGKTFSV----TGWKLGWSIGPAHLIKHLQTVQ------------QNSFYTC- 273 (410)
T ss_dssp TCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSC----GGGCCEEEECCHHHHHHHHHHH------------HTTTCCC-
T ss_pred hcccCCCCCCCHHHcCCccCeEEEEecchhhcCC----CCceEEEEEECHHHHHHHHHHH------------HhhccCC-
Confidence 21 11100 1 1122345888899999854 3678999998877655432100 0001111
Q ss_pred CcchhhhHHHHHHHHHHHH------hcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccC
Q 001989 844 AAPWGSALILPISYTYIAM------MGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTA 916 (985)
Q Consensus 844 s~~~g~~~~~~~a~a~l~~------lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~ 916 (985)
+.....++.+++.. ...+.+.+..++..++++++.+.|++ ++.+. .+.+..+ +.+++..+. .
T Consensus 274 -----~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~--~~~~~~~~~--~ 342 (410)
T 3e2y_A 274 -----ATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPI--VPDGGYF--IIADVSSLG--A 342 (410)
T ss_dssp -----CHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEEE--BCSBSSE--EEEECGGGC--C
T ss_pred -----ChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCeec--CCCccEE--EEEEchhhh--c
Confidence 11222223334432 12345666777788889999999987 44432 2222232 334443211 0
Q ss_pred CCC--------HHHHHHHH-HHCCCccCCC-CCC-------CCCEEEEeccCCCCHHHHHHHHccCChh
Q 001989 917 GIE--------PEDVAKRL-MDYGFHGPTM-SWP-------VPGTLMIEPTESESKSWTGIVMLSSPSE 968 (985)
Q Consensus 917 g~~--------~~~v~~~L-~~~Gi~~~~~-~~p-------~~~~lris~t~~~t~eeId~~~~~~~l~ 968 (985)
+.+ ..+++++| .++||.+... .+. ..+.+||+++. ++++|++ +++.|+
T Consensus 343 ~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~--~~e~l~~--~l~~l~ 407 (410)
T 3e2y_A 343 DLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIK--KDSTLDA--AEEIFR 407 (410)
T ss_dssp CCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCC--CHHHHHH--HHHHHH
T ss_pred ccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcC--CHHHHHH--HHHHHH
Confidence 111 34677765 4679986431 121 24899999865 9999999 555554
No 221
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.75 E-value=6.8e-17 Score=185.03 Aligned_cols=281 Identities=16% Similarity=0.160 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+ ..+.+++|++|+..++.++ . .++++|+++...|+..... ++..|++++.++.
T Consensus 54 ~~~l~~~la~~~~~~-~~i~~~sGt~a~~~~~~~~---~-----~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 124 (386)
T 1cs1_A 54 RDVVQRALAELEGGA-GAVLTNTGMSAIHLVTTVF---L-----KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQ 124 (386)
T ss_dssp HHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHH---C-----CTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECT
T ss_pred HHHHHHHHHHHhCCC-cEEEeCCHHHHHHHHHHHH---h-----CCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCC
Confidence 557889999999987 4455677877665444332 1 3678999988877653332 3567999999987
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++|+++++ +++++|++++|+ ++|.+. |+++|.++|+++|+++++|++|.... ...+..++.|+++
T Consensus 125 ~-----d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~De~~~~~~--~~~~~~~~~di~~ 193 (386)
T 1cs1_A 125 G-----DEQALRAALA---EKPKLVLVESPSNPLLRVV-DIAKICHLAREVGAVSVVDNTFLSPA--LQNPLALGADLVL 193 (386)
T ss_dssp T-----CHHHHHHHHH---TCCSEEEEECSCTTTCCCC-CHHHHHHHHHHTTCEEEEECTTTCTT--TCCGGGGTCSEEE
T ss_pred C-----CHHHHHHhhc---cCCcEEEEeCCCCCCCccc-CHHHHHHHHHHcCCEEEEECCCcccc--cCCccccCceEEE
Confidence 4 8999999998 788999999984 689998 89999999999999999999985322 2234467899999
Q ss_pred eCCcccccccCCCCCCc-eEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 789 LNLHKTFCIPHGGGGPG-MGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg-~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
.|+||+|+.| |+. +|++++++ ++.+.+.....+ .+. .. ++..+ ++.+..+ +
T Consensus 194 ~s~sK~~~~~----~~~~~G~~~~~~~~l~~~l~~~~~~-------------~~~-~~----~~~~~---~~~~~~l--~ 246 (386)
T 1cs1_A 194 HSCTKYLNGH----SDVVAGVVIAKDPDVVTELAWWANN-------------IGV-TG----GAFDS---YLLLRGL--R 246 (386)
T ss_dssp EETTTTTTCS----SCCCCEEEEESSHHHHHHHHHHHHH-------------HTC-BC----CHHHH---HHHHHHH--T
T ss_pred EcCcccccCC----CCceeEEEEeCcHHHHHHHHHHHHh-------------cCC-CC----CHHHH---HHHHhcc--c
Confidence 9999998532 222 38999886 555443211100 001 01 11111 1111211 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCe---eecCCC------------CceeeEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001989 867 GLTEASKIAILNANYMAKRLEKHYPI---LFRGVN------------GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~g~~l---~~~~~~------------~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~G 931 (985)
.+.+..++..++++++.+.|++...+ .++.-. ......+.+.++ + ..+++.+.|.++|
T Consensus 247 ~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~l~~~g 319 (386)
T 1cs1_A 247 TLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD------G-DEQTLRRFLGGLS 319 (386)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES------S-CHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEEC------C-CHHHHHHHHHhCC
Confidence 23444555667778888877652111 111100 001222345553 2 2678888898999
Q ss_pred CccCCCCC------------------C--------C-CCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 932 FHGPTMSW------------------P--------V-PGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 932 i~~~~~~~------------------p--------~-~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
|.+....+ | + ++.+|++++..+++++|++ +.++|+++
T Consensus 320 i~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~--l~~al~~~ 383 (386)
T 1cs1_A 320 LFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIAD--LENGFRAA 383 (386)
T ss_dssp SSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHH--HHHHHHHH
T ss_pred cceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHH--HHHHHHHh
Confidence 98652111 1 1 4799999999999999999 55555443
No 222
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.75 E-value=8.5e-17 Score=184.21 Aligned_cols=274 Identities=15% Similarity=0.087 Sum_probs=190.5
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---h
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---K 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~ 289 (985)
..++++.+|+++|.+ +..++.+||.+++.++.++ . ++||+|+++...|+++...++..++..|++++.++. +
T Consensus 54 ~~~l~~~la~~~~~~--~~i~~~sGt~a~~~~~~~~-~--~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~ 128 (386)
T 1cs1_A 54 RDVVQRALAELEGGA--GAVLTNTGMSAIHLVTTVF-L--KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQ 128 (386)
T ss_dssp HHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHH-C--CTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHH
T ss_pred HHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHH-h--CCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCCCHH
Confidence 456789999999987 3445566687666655543 2 378999999999999888887666778999999875 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ +++++++|++++| |.+|.+.|+++|.++|+++|+++++| +.++.+....+.++|+|++++|. |.|++| |
T Consensus 129 ~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-e~~~~~~~~~~~~~~~di~~~s~sK~~~~~---~ 204 (386)
T 1cs1_A 129 ALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVD-NTFLSPALQNPLALGADLVLHSCTKYLNGH---S 204 (386)
T ss_dssp HHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEE-CTTTCTTTCCGGGGTCSEEEEETTTTTTCS---S
T ss_pred HHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEE-CCCcccccCCccccCceEEEEcCcccccCC---C
Confidence 5555 7778999999988 78999999999999999999999995 34554444445578999999998 777643 2
Q ss_pred CCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHH
Q 001989 367 GPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 367 GP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~ 445 (985)
++-+|++++++ ++.+.+.....+ ..++.| ++.+ .++. . +.+.+++
T Consensus 205 ~~~~G~~~~~~~~l~~~l~~~~~~------------------------~~~~~~-----~~~~-~~~~--~--~l~~~~~ 250 (386)
T 1cs1_A 205 DVVAGVVIAKDPDVVTELAWWANN------------------------IGVTGG-----AFDS-YLLL--R--GLRTLVP 250 (386)
T ss_dssp CCCCEEEEESSHHHHHHHHHHHHH------------------------HTCBCC-----HHHH-HHHH--H--HHTTHHH
T ss_pred CceeEEEEeCcHHHHHHHHHHHHh------------------------cCCCCC-----HHHH-HHHH--h--cccHHHH
Confidence 22238999886 666554111000 001111 1111 1111 1 1123556
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEc--CC---------------CCcceEEEecCC-HHHHHHHHHHcCceeee------
Q 001989 446 IAQRVHGLAGTFALGLKKLGTVEVQ--GL---------------PFFDTVKVKCAD-AHAIASAAYKIEMNLRV------ 501 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~~~--~~---------------~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~------ 501 (985)
..++..++.+++.+.|++++.+.-. .. .....+.|.+++ ..++.+.|.++||.++.
T Consensus 251 ~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~ 330 (386)
T 1cs1_A 251 RMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGV 330 (386)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSEEBSCCCSS
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCCHHHHHHHHHhCCcceEcccCCCc
Confidence 6677788888999998887434321 11 013345666665 77888899889997752
Q ss_pred ------------------------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 ------------------------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ------------------------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..++.+|+|++..+++++|++|.++|..
T Consensus 331 ~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~ 382 (386)
T 1cs1_A 331 ESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRA 382 (386)
T ss_dssp SCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred ceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHH
Confidence 1147899999999999999999999863
No 223
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.75 E-value=9.4e-17 Score=185.95 Aligned_cols=300 Identities=12% Similarity=0.117 Sum_probs=186.6
Q ss_pred HHHHHHHHHHhCCCccceec-CcHHHHHHHHHHHHHHHHHhcCCCC---------CCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 635 NNLGEWLCTITGFDSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHH---------RNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~---------~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
.++++.++++++.+...+.. +++++++.. ..+++.+. . + .+ +++|+++.+.|..+...++..|+++
T Consensus 73 ~~lr~~ia~~~~~~~~~i~~t~G~~~al~~-~~~~~~l~-~-~-~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 148 (423)
T 3ez1_A 73 PSARALFAGYLDVKAENVLVWNNSSLELQG-LVLTFALL-H-G-VRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFEL 148 (423)
T ss_dssp HHHHHHHHHHTTSCGGGEEECSSCHHHHHH-HHHHHHHH-T-C-CTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHhCCChhhEEEeCCcHHHHHH-HHHHHHHh-c-c-CCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEE
Confidence 46788899999988755544 444555530 02333322 1 0 03 5899998887766666778889999
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEE-cC-CCccccccCHH---HHHHHH-HHcCCEEEEEccccc-ccc--C
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVT-YP-STHGVYEEGID---EICKII-HDNGGQVYMDGANMN-AQV--G 775 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~-~p-n~~G~i~~di~---eI~~la-~~~galliVD~a~~~-~~~--~ 775 (985)
+.+|++++| +|+++|++++++ .+++++|+++ +| |++|.+. +.+ +|+++| +++|+++|+|+++.. ... +
T Consensus 149 ~~v~~~~~g-~d~~~l~~~l~~-~~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~ 225 (423)
T 3ez1_A 149 LTVDMQSDG-PDVDAVERLAGT-DPSVKGILFVPTYSNPGGETI-SLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEED 225 (423)
T ss_dssp EEEEEETTE-ECHHHHHHHHHS-CTTEEEEEECSSSCTTTCCCC-CHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSS
T ss_pred EeccCCCCC-CCHHHHHHHHhh-CCCceEEEECCCCCCCCCcCC-CHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCC
Confidence 999997765 999999999952 1689988765 56 5799987 555 888888 899999999998852 111 1
Q ss_pred CCCC----------CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCc
Q 001989 776 LTSP----------GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAA 845 (985)
Q Consensus 776 l~~p----------g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~ 845 (985)
...+ +..+.++++.|++|++ . +|.++|++++++++.+.+..... .. ..+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~----~G~r~G~~~~~~~~~~~~~~~~~------------~~--~~~~~ 286 (423)
T 3ez1_A 226 RAEPVNFVVLARDAGYPDRAFVFASTSKIT-F----AGAGLGFVASSEDNIRWLSKYLG------------AQ--SIGPN 286 (423)
T ss_dssp CCCCCCHHHHHHHHTCTTSEEEEEESTTTS-C----SSSSCEEEEECHHHHHHHHHHHH------------HS--CSCCC
T ss_pred CCCCcchhhhhhccCCCCeEEEEeCchhhc-c----CCcceEEEEeCHHHHHHHHHHHh------------hh--ccCCC
Confidence 1111 1334678899999983 2 46789999998876654421100 00 11111
Q ss_pred chhhhHHHHHHHHHHHH-hc--HHHHHHHHHHHHHHHHHHHHHhhcc---CC--eeecCCCCceeeEEEEEecCccccCC
Q 001989 846 PWGSALILPISYTYIAM-MG--SKGLTEASKIAILNANYMAKRLEKH---YP--ILFRGVNGTVAHEFIVDLRGLKNTAG 917 (985)
Q Consensus 846 ~~g~~~~~~~a~a~l~~-lg--~eGl~~~~~~~~~~a~~l~~~L~~g---~~--l~~~~~~~~~~~~~iv~~~~~~~~~g 917 (985)
.....++.+++.. .+ .+.+++..+...++.+.+.+.|.+. .+ +.+..+.+..+ +.++++ +
T Consensus 287 ----~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~--~~~~~~------~ 354 (423)
T 3ez1_A 287 ----KVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYF--ISLDTA------E 354 (423)
T ss_dssp ----HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSC--EEEEES------S
T ss_pred ----HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEE--EEEECC------C
Confidence 1112222333443 12 1223333333444555555555431 22 32222222222 345654 2
Q ss_pred CCHHHHHHHHHHCCCccCCC--CCC-----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 918 IEPEDVAKRLMDYGFHGPTM--SWP-----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 918 ~~~~~v~~~L~~~Gi~~~~~--~~p-----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+...+.+.|.++||.+... .++ ..+++||++... +++||++ +++.|+++++++.
T Consensus 355 ~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~i~~--~~~~l~~~l~~~~ 416 (423)
T 3ez1_A 355 PVADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEEVRT--AMQVVAACIRLAT 416 (423)
T ss_dssp SCHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS-CHHHHHH--HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC-CHHHHHH--HHHHHHHHHHHHH
Confidence 26788999999999987541 122 358999999765 9999999 8888988887654
No 224
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.75 E-value=3.4e-17 Score=191.61 Aligned_cols=305 Identities=12% Similarity=0.117 Sum_probs=192.9
Q ss_pred hhHHHHHHHHHHHHHHHhCC-Cccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEE
Q 001989 628 QGYQEMFNNLGEWLCTITGF-DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~-~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv 705 (985)
+|..++.+.+.+++.+.+|. +... ++.++|++|+..++.++. .++|+|+++.+.|..+...++..|++++
T Consensus 118 ~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~--------~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~ 189 (448)
T 3aow_A 118 KGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFL--------NPGDIVVVEAPTYLAALQAFNFYEPQYI 189 (448)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHTTCCEEE
T ss_pred CCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHc--------CCCCEEEEeCCChHHHHHHHHHcCCEEE
Confidence 45444454455555444588 4433 455666666644444331 4678999988877666666778899999
Q ss_pred EEcCCCCCCCCHHHHHHHHHh---cCCCEEEEE-EEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cC--
Q 001989 706 SVGTDAKGNINIEELRKAAEA---NRDNLSTLM-VTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VG-- 775 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~---~~~~t~~Vv-v~~p-n~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~-- 775 (985)
.+|.+++| +|+++|+++++. ..+++++|+ +.+| |++|.+.+ ++++|.++|+++|+++++|+++.... .+
T Consensus 190 ~v~~~~~g-~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~ 268 (448)
T 3aow_A 190 QIPLDDEG-MKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNP 268 (448)
T ss_dssp EEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCC
T ss_pred EeccCCCC-CCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCC
Confidence 99987766 999999999961 113788875 5667 56898851 36799999999999999999985321 11
Q ss_pred CCCC---CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 776 LTSP---GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 776 l~~p---g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
.... ...+.++.+.+++|+|+ | |.++|++++++++.+.+...... . ..+++ ...
T Consensus 269 ~~~~~~~~~~~~vi~~~S~SK~~~-~----GlriG~v~~~~~l~~~l~~~~~~------------~--~~~~~----~~~ 325 (448)
T 3aow_A 269 EKKIKALDNEGRVIYLGTFSKILA-P----GFRIGWMVGDPGIIRKMEIAKQS------------T--DLCTN----VFG 325 (448)
T ss_dssp CCCTGGGCTTSCEEEEEESTTTTC-G----GGCCEEEEECHHHHHHHHHHHHH------------H--HSSCC----HHH
T ss_pred CcCHHhcCCCCCEEEEccchhhcc-c----cccEEEEEeCHHHHHHHHHHHHH------------h--cCCCC----HHH
Confidence 0111 12245788889999985 3 45689999998766544211000 0 01111 122
Q ss_pred HHHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHhhccC--CeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH
Q 001989 853 LPISYTYIAMMG-SKGLTEASKIAILNANYMAKRLEKHY--PILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 853 ~~~a~a~l~~lg-~eGl~~~~~~~~~~a~~l~~~L~~g~--~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
..++.++|...+ .+.+.+..+...++++++.+.|++.+ .+.+..+.+..+ +.++++ .+.+..++.++|.+
T Consensus 326 q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~--~~v~~~-----~~~~~~~l~~~l~~ 398 (448)
T 3aow_A 326 QVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMF--IWVTLP-----DGIDSKKMLERAIK 398 (448)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSE--EEEECS-----TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEE--EEEEcC-----CCCCHHHHHHHHHH
Confidence 222334443211 23355555566778899999997632 232222222222 345654 24678899999999
Q ss_pred CCCccCCC-CC-C---CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 930 YGFHGPTM-SW-P---VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 930 ~Gi~~~~~-~~-p---~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+||.+... .| + ..+++|++++. .+++||++ +++.|++++++.
T Consensus 399 ~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~--~~~~L~~~l~~~ 445 (448)
T 3aow_A 399 KGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIME--GIKRLAETIKEE 445 (448)
T ss_dssp TTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHH--HHHHHHHHHHHH
T ss_pred CCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHH--HHHHHHHHHHHH
Confidence 99986432 22 1 24789999986 48999999 788888887654
No 225
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.75 E-value=1.5e-16 Score=182.86 Aligned_cols=342 Identities=15% Similarity=0.138 Sum_probs=213.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCccc-eecCCCCCC-CCCcHHHHHHH-------HhCCccccccCCChhhHhhhHH
Q 001989 140 KFSKFDEGLTESQMIEHMQKLASMNKVYK-SFIGMGYYN-THVPPVILRNI-------MENPAWYTQYTPYQAEIAQGRL 210 (985)
Q Consensus 140 ~lp~~~~~~se~e~~~~~~~l~~~n~~~~-~~lG~g~y~-~~~p~~v~~~i-------~~~~~~~t~~~pyq~e~sqg~l 210 (985)
.+| .+++||.++...|.+++.++..+. .-.|.|-=. ...-+.+...- ....+|+++ .| ...-+.+..
T Consensus 22 ~~p--~~g~~~~~i~~~l~~~~~~d~~~~~~~~~~geregrv~~~~~~~r~~g~~hg~~~~~d~l~~-~~-~~~~~~~~~ 97 (450)
T 3bc8_A 22 KCP--EDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAV-QP-KAAGSSLLN 97 (450)
T ss_dssp CCC--SSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCBCC--------CC-SBHHHHHHH
T ss_pred cCC--ccCCCHHHHHHHHHHHhhCCCCccccccccCcccceEecccccCCccceecchhHHHHHHHh-Cc-cccCCcHHH
Confidence 577 689999999999999998764421 112333111 11222221110 000134443 33 222344445
Q ss_pred HHHHHHHHHHHHhcCCCCcce-eeccchHHHHHHHHHHh-hhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 211 ESLLNFQTMIADLTGLPMSNA-SLLDEGTAAAEAMAMCN-NIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~-sl~~~~ta~~ea~~~a~-~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
..-.++..++.+++|++.... .+++|+|+++.++.|+. +-...++++||+++++|.|+...+.. .|++.+++++
T Consensus 98 ~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l----~Gl~p~~v~~ 173 (450)
T 3bc8_A 98 KITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVT----AGFEPVVIEN 173 (450)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHH----TTCEEEEECC
T ss_pred HHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHH----cCCeeEEEEe
Confidence 556667788899999987644 67788887777777643 32112378999999999999999863 5777777643
Q ss_pred -----------hhhhc-cC--C-CEeEEEEEcCCCCe--eeccHHHHHHHHHhCCcEEEEEecCccccCCC-----CC-C
Q 001989 289 -----------KDIDY-KS--G-DVCGVLVQYPGTEG--EVLDYGDFIKNAHANGVKVVMATDLLALTILK-----PP-G 345 (985)
Q Consensus 289 -----------~~l~~-l~--~-~t~~V~v~~pn~~G--~v~di~~I~~~a~~~galliV~a~~~~lg~l~-----~~-~ 345 (985)
++|++ |. + +..++++++|+++| .++||++|+++||++|++++||. ++|... -+ .
T Consensus 174 ~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~---A~G~~~~~~~~l~~~ 250 (450)
T 3bc8_A 174 VLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNN---AYGLQSSKCMHLIQQ 250 (450)
T ss_dssp EEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEEC---TTTTTCHHHHHHHHH
T ss_pred eecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEEC---CCchhhhhhHhHHHH
Confidence 34555 42 2 45567777888877 88999999999999999999952 333211 01 1
Q ss_pred --cc-cceEEEecC-ccccccCCCCCCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCc
Q 001989 346 --EL-GADIVVGSA-QRFGVPMGYGGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNI 420 (985)
Q Consensus 346 --~~-GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni 420 (985)
+. |||+++.|. |+++.|.+ ++++.+++ ++++++.. . |. .+ +|
T Consensus 251 a~~~~~AD~~v~S~HK~l~a~~~-----~~~l~~rd~~~~~~~~~-------~------~~----------g~--~s--- 297 (450)
T 3bc8_A 251 GARVGRIDAFVQSLDKNFMVPVG-----GAIIAGFNEPFIQDISK-------M------YP----------GR--AS--- 297 (450)
T ss_dssp HHHHSCCCEEEEEHHHHHSCCSS-----CEEEEESCHHHHHHHHH-------H------SC----------SC--BC---
T ss_pred HhcccCCCEEEECCccCCCchhc-----cEEEEecCHHHHHHHHH-------H------hh----------cC--Cc---
Confidence 23 899999999 77777743 36777653 44433210 0 00 00 11
Q ss_pred cchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC---CeEEcCCCCcc-eEEEec-------CC-HHHH
Q 001989 421 CTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQGLPFFD-TVKVKC-------AD-AHAI 488 (985)
Q Consensus 421 ~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~~-~~~~~~-------~~-~~~v 488 (985)
.++.+.+..++ ..+|.+|++++.++..+++++++++|+++. |+++++.+... ...+.. .. ..++
T Consensus 298 --~SpsL~l~~~l--~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D~tkl 373 (450)
T 3bc8_A 298 --ASPSLDVLITL--LSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQL 373 (450)
T ss_dssp --SHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHH
T ss_pred --ccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccCCCcee
Confidence 12233333333 345999999999999999999999998765 57777543221 233311 11 5566
Q ss_pred HHHHHHcCc---ee---------------------eeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 489 ASAAYKIEM---NL---------------------RVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 489 ~~~L~~~GI---~~---------------------~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.-.+...|+ .+ +..+...+.+.++..+|++|+|+|+++|..
T Consensus 374 ~i~~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~ 438 (450)
T 3bc8_A 374 GSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDK 438 (450)
T ss_dssp HHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred EEEecCCCCccceeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHH
Confidence 666665553 22 223357899999999999999999999984
No 226
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.75 E-value=1.7e-17 Score=191.86 Aligned_cols=284 Identities=17% Similarity=0.225 Sum_probs=186.4
Q ss_pred HHHHHHHHHhC-CCCHHHhhhhcCCCccccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCccceecCCCCCCCCCcHHHHH
Q 001989 108 EDQAKMSELVG-LDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILR 186 (985)
Q Consensus 108 ~~~~~ml~~~g-~~~~~~l~~~~ip~~~~~~~~~lp~~~~~~se~e~~~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~ 186 (985)
+|+++||+.+| .++++||+++ |+++++ ...+++..++..|.. .+. +
T Consensus 4 ~~~~~m~~~~~~~~~~~~~~~~-~~~~~~----------------~~~~~~~~~a~~n~~---------------~Vl-~ 50 (427)
T 3i16_A 4 ESTKQFLKKYNINDRVLKLYET-AMNDIQ----------------NQFKILDDIREFNQL---------------KVL-N 50 (427)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHH-HHHHTH----------------HHHHHHHHHHHHHHH---------------HHH-H
T ss_pred hHHHHHHHHcCCcHHHHHHHHH-HHHHHH----------------HHHHHHHHHHHhCHH---------------HHH-H
Confidence 78999999999 8899999986 766551 123445555554431 111 1
Q ss_pred HHHhC---CccccccCCCh-hhHhhhHHHHHHHHHHHHHHhcCCCCcceee---ccchHHHHHHHHHHhhhhcCCCCEEE
Q 001989 187 NIMEN---PAWYTQYTPYQ-AEIAQGRLESLLNFQTMIADLTGLPMSNASL---LDEGTAAAEAMAMCNNIQKGKKKTFI 259 (985)
Q Consensus 187 ~i~~~---~~~~t~~~pyq-~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl---~~~~ta~~ea~~~a~~~~~~~g~~Vl 259 (985)
++... ...+...+.|. ++. | ..++++.+|+++|++.+ .+ +.+||+++.+++.++ . ++||+||
T Consensus 51 A~~~~~~~~~~~~~~~gy~y~~~--~----~~~Le~~lA~l~g~e~a--lv~p~~~sGt~Ai~~al~al-l--~pGD~Vl 119 (427)
T 3i16_A 51 AFQEERISEAHFTNSSGYGYGDI--G----RDSLDAVYARVFNTESA--LVRPHFVNGTHALGAALFGN-L--RPGNTML 119 (427)
T ss_dssp HHHHTTCCGGGSCCCCTTCTTCH--H----HHHHHHHHHHHHTCSEE--EEETTCCSHHHHHHHHHHHH-C--CTTCEEE
T ss_pred HHHHhchhHHhcCCCCCCCCCHH--H----HHHHHHHHHHHhCCcce--EEeCCCccHHHHHHHHHHHH-h--CCCCEEE
Confidence 11110 00011111111 011 1 55677899999999875 34 688888777766654 2 3899999
Q ss_pred EcC-CCChhHHHHH-------HHhhcCCCeEEEEeCc--------hhhhc-cC--CCEeEEEEEc----C-CCCeeeccH
Q 001989 260 IAS-NCHPQTIDIC-------ITRADGFDIKVVVSDL--------KDIDY-KS--GDVCGVLVQY----P-GTEGEVLDY 315 (985)
Q Consensus 260 v~~-~~H~s~~~~~-------~~~a~~~gi~v~~v~~--------~~l~~-l~--~~t~~V~v~~----p-n~~G~v~di 315 (985)
+++ ..|+.....+ ...++..|++++.+|. +++++ ++ ++|++|++++ | |++|.+.|+
T Consensus 120 ~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl 199 (427)
T 3i16_A 120 SVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDI 199 (427)
T ss_dssp ESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHH
T ss_pred EeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHH
Confidence 999 8998888666 1223457999999875 35555 66 7899999998 7 789999999
Q ss_pred HHHHHHHHh--CCcEEEEEecCccccC-CCCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeee
Q 001989 316 GDFIKNAHA--NGVKVVMATDLLALTI-LKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVS 391 (985)
Q Consensus 316 ~~I~~~a~~--~galliV~a~~~~lg~-l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t 391 (985)
++|+++||+ +|++++|| +.++.+. ...|.++|+||+++|. |.|+++ |.|.+|++++++++++++..++.-
T Consensus 200 ~~i~~la~~~~~g~~livD-~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~---g~~~gG~i~~~~~li~~l~~~~~~-- 273 (427)
T 3i16_A 200 KSIVDCVKNIRKDIICFVD-NCYGEFMDTKEPTDVGADLIAGSLIKNIGGG---IAPTGGYLAGTKDCIEKTSYRLTV-- 273 (427)
T ss_dssp HHHHHHHHHHCTTSEEEEE-CTTTTTSSSSCGGGGTCSEEEEETTSGGGTT---TCCSCEEEEECHHHHHHHHHHHSC--
T ss_pred HHHHHHHHHhCCCCEEEEE-CCCccccccCCccccCCeEEEecCcccCCCC---CCceEEEEEECHHHHHHHHHhccc--
Confidence 999999999 99999995 4555555 4567789999999998 877642 226669999999888776321100
Q ss_pred ecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc
Q 001989 392 IDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ 470 (985)
Q Consensus 392 ~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~ 470 (985)
+ .-|. .++++ + . +.++.+.|.+-+..+.++..+++.++++.|+++| +++.
T Consensus 274 ------~---------------~~g~--~~~~~-~-~---~a~~~l~gl~~~~~r~~~~~~~a~~la~~L~~~g-~~V~ 323 (427)
T 3i16_A 274 ------P---------------GIGG--ECGST-F-G---VVRSMYQGLFLAPHISMEALKGAILCSRIMELAG-FEVM 323 (427)
T ss_dssp ------T---------------TTGG--GCCCC-T-T---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CEEE
T ss_pred ------C---------------ccCc--cCCcc-H-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-Ceec
Confidence 0 0000 00000 0 0 0111222223345677888999999999999998 7775
No 227
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.75 E-value=3.2e-17 Score=190.45 Aligned_cols=298 Identities=12% Similarity=0.072 Sum_probs=191.4
Q ss_pred HHHHHHHHHh-----CCCccc----eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHH-CCcEEE
Q 001989 636 NLGEWLCTIT-----GFDSFS----LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAM-CGMKIV 705 (985)
Q Consensus 636 e~~~~la~l~-----G~~~~~----~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~-~G~~vv 705 (985)
++++.+++++ +.+... ++.++|++|+..++.++. .++++|+++++.|..+...++. .|++++
T Consensus 92 ~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~--------~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~ 163 (430)
T 2x5f_A 92 ELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFV--------NQDDTILLPEHNWGNYKLVFNTRNGANLQ 163 (430)
T ss_dssp HHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHC--------CTTCEEEEESSCCTHHHHHHTTTTCCEEE
T ss_pred HHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHh--------CCCCEEEEcCCcCccHHHHHHHhcCCeEE
Confidence 4556666666 666544 445556666644444331 3678999988877777777777 899999
Q ss_pred EEcCCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccC---HHHHHHHHHH-----cCCEEEEEcccccc-cc
Q 001989 706 SVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG---IDEICKIIHD-----NGGQVYMDGANMNA-QV 774 (985)
Q Consensus 706 ~v~~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d---i~eI~~la~~-----~galliVD~a~~~~-~~ 774 (985)
.+|+++ ++.+|+++|++++++.+.++++|++++|+ ++|.+. + +++|.++|++ +|+++++|+++... ..
T Consensus 164 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~ 242 (430)
T 2x5f_A 164 TYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTP-THKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYE 242 (430)
T ss_dssp EECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCS
T ss_pred EEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcC-CHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCC
Confidence 999865 46799999999998433389999999994 689886 5 8999999999 99999999998521 11
Q ss_pred CCC-CC-C----c-cCC---cEEEeCCcccccccCCCCCCceEEEEE---cccccCcCCCCccccCCCCCCCCCCCCCCC
Q 001989 775 GLT-SP-G----Y-IGA---DVCHLNLHKTFCIPHGGGGPGMGPIGV---KKHLAPFLPSHPVVSTGGIPAPEKSQPLGT 841 (985)
Q Consensus 775 ~l~-~p-g----~-~g~---Di~~~s~hK~l~~p~g~GGPg~G~i~~---~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~ 841 (985)
+-. .+ . . .+. ++++.|+||+|+.| |.++|++++ ++++.+.+....... . +. .+.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~riG~~~~~~~~~~~~~~l~~~~~~~-----~--~~-~~~~ 310 (430)
T 2x5f_A 243 DVYTQSLFTALTNLHSNAILPIRLDGATKEFFAW----GFRVGFMTFGTSDQTTKEVLEAKVKGL-----I--RS-NISS 310 (430)
T ss_dssp SSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCG----GGCCEEEEEBCCCHHHHHHHHHHHHHH-----H--HT-TTSS
T ss_pred cccchHHHHHHhhccCCcceEEEEEecccCCCCC----CCCeEEEEEecCCHHHHHHHHHHHhhh-----h--hc-ccCC
Confidence 110 11 1 1 234 57788999998543 556899999 776654432110000 0 00 0111
Q ss_pred CCCcchhhhHHHHHHHHHHH-Hhc-HHHHHHHHHHHHHHHHHHHHHhhcc---CCeeecCCCCceeeEEEEEecCccccC
Q 001989 842 IAAAPWGSALILPISYTYIA-MMG-SKGLTEASKIAILNANYMAKRLEKH---YPILFRGVNGTVAHEFIVDLRGLKNTA 916 (985)
Q Consensus 842 i~s~~~g~~~~~~~a~a~l~-~lg-~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~~~~~~~~~~~~~iv~~~~~~~~~ 916 (985)
. +.....++.++|. ... .+.+.+..++..++++++.+.|++. .++.+..+.+..+ +.+.++
T Consensus 311 ~------~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~--~~~~~~------ 376 (430)
T 2x5f_A 311 G------PLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYF--MAIKVH------ 376 (430)
T ss_dssp C------CHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEECCCCBSSE--EEEEES------
T ss_pred C------ChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceeeCCCceEE--EEeCCC------
Confidence 1 1122222233333 110 1223335666778889999999831 2333322222222 334543
Q ss_pred CCCHHHHHHHHHH-CCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 917 GIEPEDVAKRLMD-YGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 917 g~~~~~v~~~L~~-~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+.+..++.++|.+ +||.+... ..+++||+++. .+++||++ +++.|+++++++
T Consensus 377 ~~~~~~~~~~l~~~~gi~v~~g---~~~~iRis~~~-~~~e~i~~--~~~~l~~~l~~~ 429 (430)
T 2x5f_A 377 DVDPEALRKHLIDKYSIGVIAL---NATDIRIAFSC-VEKDDIPH--VFDSIAKAIDDL 429 (430)
T ss_dssp SSCHHHHHHHHHHHHCEECEEC---SSSEEEEEGGG-SCGGGHHH--HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCEEEecC---CCCeEEEEEec-CCHHHHHH--HHHHHHHHHHhc
Confidence 3578899999998 89987532 14789999986 59999999 888898888765
No 228
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.75 E-value=1.9e-16 Score=179.31 Aligned_cols=316 Identities=11% Similarity=0.038 Sum_probs=201.3
Q ss_pred ecCCCCCCCCCcHHHHHHHHhCC-ccccc------cCCChhhHhhhHHHHHHHHHHHHHHhcCCCCc-ce-eeccchHHH
Q 001989 170 FIGMGYYNTHVPPVILRNIMENP-AWYTQ------YTPYQAEIAQGRLESLLNFQTMIADLTGLPMS-NA-SLLDEGTAA 240 (985)
Q Consensus 170 ~lG~g~y~~~~p~~v~~~i~~~~-~~~t~------~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~-~~-sl~~~~ta~ 240 (985)
++..|. ...|+.+.+++...- .|... ++.+ ..+..+.+.++++.+++++|++.. ++ .++.|+|.+
T Consensus 7 l~~~~~--~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a 80 (362)
T 2c0r_A 7 NFNAGP--AALPLEVLERAQAEFVDYQHTGMSIMEMSHR----GAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQ 80 (362)
T ss_dssp ECCSSS--CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTT----SHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHH
T ss_pred eccCCC--CCCCHHHHHHHHHHHhhhhhcCccccccCCC----cHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHH
Confidence 345553 457777766655432 11000 1111 234456778899999999999864 54 455888888
Q ss_pred HHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---------hhhc--cCCCEeEEEEEcC-CC
Q 001989 241 AEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK---------DIDY--KSGDVCGVLVQYP-GT 308 (985)
Q Consensus 241 ~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~---------~l~~--l~~~t~~V~v~~p-n~ 308 (985)
+.+++.++. ++||+|++....|.+.. +...++..| +++.++.+ ++++ ++++|++|++++| |.
T Consensus 81 ~~~~~~~l~---~~gd~vl~~~~~~~~~~--~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~i~~~t~~v~~~~~~n~ 154 (362)
T 2c0r_A 81 FAMIPMNFL---KEGQTANYVMTGSWASK--ALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQLQDNAAYLHLTSNETI 154 (362)
T ss_dssp HHHHHHHHC---CTTCEEEEEECSHHHHH--HHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCCCCTTEEEEEEESEETT
T ss_pred HHHHHHhcC---CCCCeEEEEecCcHhHH--HHHHHHHhC-CeEEEecccccccccCCCHHHcccCCCcCEEEEeCCcCc
Confidence 877776652 38899988765544421 111122346 66665432 2222 5788999999987 78
Q ss_pred Ceee-ccHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCC
Q 001989 309 EGEV-LDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPG 385 (985)
Q Consensus 309 ~G~v-~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~ 385 (985)
+|.+ .|+++| +|++++||. ..+.+... +..+ .|++++++ |+++ | +|+|++++++++++.+..
T Consensus 155 tG~~~~~l~~i------~~~~vivD~-a~~~~~~~~~~~~--~d~~~~s~~K~~g-~-----~G~G~l~~~~~~~~~l~~ 219 (362)
T 2c0r_A 155 EGAQFKAFPDT------GSVPLIGDM-SSDILSRPFDLNQ--FGLVYAGAQKNLG-P-----SGVTVVIVREDLVAESPK 219 (362)
T ss_dssp TTEECSSCCCC------TTSCEEEEC-TTTTTSSCCCGGG--CSEEEEETTTTTC-C-----SSCEEEEEEGGGSSSCCT
T ss_pred cceeccccccc------CCCEEEEEC-hhhccCCccchhH--CcEEEEecccccc-C-----cCcEEEEEcHHHHhhccc
Confidence 9995 888887 799999953 45555432 1223 49999998 6553 3 358999999988776632
Q ss_pred ceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHHHHHHhcC
Q 001989 386 RIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKL 464 (985)
Q Consensus 386 ~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~ 464 (985)
.. + +.+++.. .+......+|.|. ....++.+++ .++..+ |++++.++..++++++++.|+++
T Consensus 220 ~~----------~-~~~~~~~-~~~~~~~~~t~~~---~~~~a~~~al--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 282 (362)
T 2c0r_A 220 HL----------P-TMLRYDT-YVKNNSLYNTPPS---FGIYMVNEVL--KWIEERGGLEGVQQANRKKASLIYDAIDQS 282 (362)
T ss_dssp TS----------C-GGGCHHH-HHHTTTCSSCCCH---HHHHHHHHHH--HHHHHTTHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cC----------c-hHHhHHH-HhhccCcCCCchH---HHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 10 0 1111100 0000111244443 3344444444 444444 78999999999999999999998
Q ss_pred CCe-EEcCCC---CcceEEEecCC---HHHHHHHHHHcCceeeee--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 465 GTV-EVQGLP---FFDTVKVKCAD---AHAIASAAYKIEMNLRVV--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 465 g~~-~~~~~~---~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~--~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
|++ ++..++ ....+.+..++ +.++.+.|.++||.+..- ..+.+|+|++.++|+||+++++++|++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~~l~~ 356 (362)
T 2c0r_A 283 GGFYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEH 356 (362)
T ss_dssp TTSSEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCccccCCChHHcCCcEEEEEcCCcchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 645 775321 12245666653 788999999999976432 146799999999999999999999873
No 229
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.75 E-value=7.3e-18 Score=190.48 Aligned_cols=306 Identities=12% Similarity=0.049 Sum_probs=187.7
Q ss_pred hhHHHHHHHHHHHHHHHhCCCc-cc-eecCcH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDS-FS-LQPNAG-AAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~-~~-~~~~sG-a~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
++..+..+++++++++++|.+. .. ++.+++ ++|+.+++.++. .+| .++++|+++...|.. ...++..| ++
T Consensus 44 ~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~----~~~-~~g~~vi~~~~~~~~-~~~~~~~g-~~ 116 (360)
T 1w23_A 44 QSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLL----TKG-TIGNYVLTGSWSEKA-LKEAKLLG-ET 116 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC----CTT-CEEEEEECSHHHHHH-HHHHHTTS-EE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhc----CCC-CcccEEEecchhHHH-HHHHHHhC-Ce
Confidence 4566778899999999999863 23 333333 666654444331 112 235566666543322 12356679 99
Q ss_pred EEEcCCC-CCCCCHHHHHH-HHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCc
Q 001989 705 VSVGTDA-KGNINIEELRK-AAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY 781 (985)
Q Consensus 705 v~v~~d~-~g~iD~e~L~~-~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~ 781 (985)
+.+|+++ +|.+|+++|++ +++ ++|++|++++| |++|.+. | +|. +++|+++++|++|..+...+ ....
T Consensus 117 ~~v~~~~~~~~~d~~~l~~~~i~---~~~k~v~~~~~~nptG~~~-~--~i~---~~~~~~li~D~a~~~~~~~~-~~~~ 186 (360)
T 1w23_A 117 HIAASTKANSYQSIPDFSEFQLN---ENDAYLHITSNNTIYGTQY-Q--NFP---EINHAPLIADMSSDILSRPL-KVNQ 186 (360)
T ss_dssp EEEEECGGGTSCSCCCGGGCCCC---TTEEEEEEESEETTTTEEC-S--SCC---CCCSSCEEEECTTTTTSSCC-CGGG
T ss_pred EEeecccccCcCCccchHhhccC---CCCCEEEEeCCCCCcceec-c--ccc---ccCCceEEEechhhcCCCCc-Cccc
Confidence 9999875 67789999998 886 78999999997 5799986 3 333 38999999999986432211 1222
Q ss_pred cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 001989 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 782 ~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~ 861 (985)
.|++++|+||+|+ ++|+|++++++++.+.+.... ++..+.............. +.....++.+.+.
T Consensus 187 --~di~~~s~sK~~~------~~G~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~al~ 252 (360)
T 1w23_A 187 --FGMIYAGAQKNLG------PSGVTVVIVKKDLLNTKVEQV-PTMLQYATHIKSDSLYNTP-----PTFSIYMLRNVLD 252 (360)
T ss_dssp --CSEEEEETTTTTS------CTTCEEEEEEHHHHCSCCTTC-CGGGCHHHHHHTTTCSSCC-----CHHHHHHHHHHHH
T ss_pred --CCEEEEEcccccC------CCCcEEEEEcHHHHhhcccCC-cchhhhhhhhhccCCCCCC-----CHHHHHHHHHHHH
Confidence 3999999999884 346899999987665553211 1100000000000000111 1111222234455
Q ss_pred HhcHH-HHHHHHHHHHHHHHHHHHHhhccCCe-eec-CCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC
Q 001989 862 MMGSK-GLTEASKIAILNANYMAKRLEKHYPI-LFR-GVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS 938 (985)
Q Consensus 862 ~lg~e-Gl~~~~~~~~~~a~~l~~~L~~g~~l-~~~-~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~ 938 (985)
.+..+ ++.++.++..++++++.+.|++...+ ... .+.......+.+.++. +.+..++.+.|.++||.+....
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~gi~~~~~~ 327 (360)
T 1w23_A 253 WIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRN-----EELNQQFLAKAKEQGFVGLNGH 327 (360)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSS-----HHHHHHHHHHHHHTTEESCBCC
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCcEEEEEcCC-----CccHHHHHHHHHHCCeeeecCC
Confidence 54444 67778888899999999999872112 111 1111111124455541 1235678889999999874322
Q ss_pred CCCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 939 WPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 939 ~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
+.++.+|++++..++++|+++ +++.|+++++
T Consensus 328 -~~~~~iRis~~~~~~~~~i~~--~~~~l~~~~~ 358 (360)
T 1w23_A 328 -RSVGGCRASIYNAVPIDACIA--LRELMIQFKE 358 (360)
T ss_dssp -TTTCSEEEECCTTSCHHHHHH--HHHHHHHHHH
T ss_pred -CCCCeEEEEecCCCCHHHHHH--HHHHHHHHHh
Confidence 124789999999999999999 7788887765
No 230
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.75 E-value=5.5e-17 Score=189.80 Aligned_cols=341 Identities=18% Similarity=0.177 Sum_probs=210.9
Q ss_pred ccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHH
Q 001989 592 IPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRA 670 (985)
Q Consensus 592 ~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~ 670 (985)
..||++++.+..+...+......+.+++.+. .+...++.+.|+++++.+. ..++.+||++|++++++.+|.
T Consensus 79 ~~lGh~~p~v~~Ai~~q~~~l~~~~~~~~~~--------~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~ 150 (473)
T 4e3q_A 79 MVAGFDHKGLIDAAKAQYERFPGYHAFFGRM--------SDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWF 150 (473)
T ss_dssp CTTCSCCHHHHHHHHHHHHHCCCCCCCTTEE--------EHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHH
T ss_pred hhccCCCHHHHHHHHHHHHhccccccccccc--------CHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHH
Confidence 4567776666655444432222222211110 1223467888999986543 346789999999999999999
Q ss_pred HHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC-----------cEEEEEcCC------CCCCC-------CHHHHHHHHH
Q 001989 671 YHKARGDHHRNVCII-PVSAHGTNPATAAMCG-----------MKIVSVGTD------AKGNI-------NIEELRKAAE 725 (985)
Q Consensus 671 ~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G-----------~~vv~v~~d------~~g~i-------D~e~L~~~i~ 725 (985)
|+..+|..++.+||. ...+||....++...| ..+..++.. ..+.. ..+++++.|.
T Consensus 151 ~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 230 (473)
T 4e3q_A 151 LHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQ 230 (473)
T ss_dssp HHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHH
Confidence 887777656677776 6789998766643322 123334432 11221 1345666665
Q ss_pred hc-CCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCCCCCCccC--------CcEEEeCCc
Q 001989 726 AN-RDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG--------ADVCHLNLH 792 (985)
Q Consensus 726 ~~-~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g--------~Di~~~s~h 792 (985)
+. .+++++|+++-. ..-|++.+ -+++|.++|+++|++||+|+++ .|+.+.|.++ +|+++++
T Consensus 231 ~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~----tGfGRtG~~fa~e~~gv~PDi~t~~-- 304 (473)
T 4e3q_A 231 REGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVI----CGFGRTGNTWGCVTYDFTPDAIISS-- 304 (473)
T ss_dssp HHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTT----TSSSTTSSSCHHHHTTCCCSEEEEC--
T ss_pred hhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCcc----ccCCcccchhHHHhcCCCCChHHhc--
Confidence 33 346777877642 34576653 3899999999999999999876 5666666543 7999774
Q ss_pred ccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHH
Q 001989 793 KTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEAS 872 (985)
Q Consensus 793 K~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~ 872 (985)
|.++ +|+.-+|.+.+++++.+.+....... ......+++.|++++++++.+.|+.+.++++.+
T Consensus 305 K~l~----gG~~Pl~av~~~~~i~~~~~~~~~~~-----------~~~~hg~T~~Gnpla~Aaala~L~~i~~~~l~~-- 367 (473)
T 4e3q_A 305 KNLT----AGFFPMGAVILGPELSKRLETAIEAI-----------EEFPHGFTASGHPVGCAIALKAIDVVMNEGLAE-- 367 (473)
T ss_dssp GGGG----TTSSCCEEEEECHHHHHHHHHHHHHH-----------SCCCCCCTTTTCHHHHHHHHHHHHHHHHSSHHH--
T ss_pred cccc----CCCCCcccccccHHHHHHhccccccc-----------cccccCCCCCCCcchhhhhhhhhhhhccccHHH--
Confidence 7763 44345666777877654432110000 000112345678888888999999988877654
Q ss_pred HHHHHHHHHHHHHhhcc---CCee-ecCCCCceeeEEEEEecCc---ccc---CCCCHHHHHHHHHHCCCccCCCCCCCC
Q 001989 873 KIAILNANYMAKRLEKH---YPIL-FRGVNGTVAHEFIVDLRGL---KNT---AGIEPEDVAKRLMDYGFHGPTMSWPVP 942 (985)
Q Consensus 873 ~~~~~~a~~l~~~L~~g---~~l~-~~~~~~~~~~~~iv~~~~~---~~~---~g~~~~~v~~~L~~~Gi~~~~~~~p~~ 942 (985)
+..+...+|.++|++. ..+. +.+. +. + +.+++..- +.. ...-...+.+.+.++|+++... .
T Consensus 368 -~~~~~g~~l~~~L~~l~~~~~v~~vRG~-Gl-~--~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----g 438 (473)
T 4e3q_A 368 -NVRRLAPRFEERLKHIAERPNIGEYRGI-GF-M--WALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPL----G 438 (473)
T ss_dssp -HHHHHHHHHHHHHHHHTTSTTEEEEEEE-TT-E--EEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEE----T
T ss_pred -HHHHHHHHHHHHHHHHhcCCCeeEEeec-ce-E--EEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEec----C
Confidence 5566788888888752 2221 1111 11 1 22332100 000 0011467889999999987543 4
Q ss_pred CEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 943 GTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 943 ~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+.+|++|+...|++|||+ ++++++++++++
T Consensus 439 ~~i~l~PPL~it~~eid~--~~~~l~~al~~v 468 (473)
T 4e3q_A 439 QSVVLCPPFILTEAQMDE--MFDKLEKALDKV 468 (473)
T ss_dssp TEEEECCCTTCCHHHHHH--HHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCHHHHHH--HHHHHHHHHHHH
Confidence 799999999999999999 778888887764
No 231
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.75 E-value=1e-16 Score=183.40 Aligned_cols=300 Identities=12% Similarity=0.055 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHHhC--CCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC
Q 001989 633 MFNNLGEWLCTITG--FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT 709 (985)
Q Consensus 633 ~~~e~~~~la~l~G--~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~ 709 (985)
+.+++.+++.+.+| .+... ++.++|++++..++.++. .++++|+++.+.|..+...++..|++++.+|+
T Consensus 69 lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~--------~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~ 140 (390)
T 1d2f_A 69 FLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS--------ETGEGVVIHTPAYDAFYKAIEGNQRTVMPVAL 140 (390)
T ss_dssp HHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS--------CTTCEEEEEESCCHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhc--------CCCCEEEEcCCCcHHHHHHHHHCCCEEEEeec
Confidence 34455555555567 44444 445566666644443321 36789999887776666667889999999998
Q ss_pred CCCC---CCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEccccccc-cC--CCCCC
Q 001989 710 DAKG---NINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VG--LTSPG 780 (985)
Q Consensus 710 d~~g---~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~--l~~pg 780 (985)
++++ .+|+++|++++++ .++++|++++|+ ++|.+.+ ++++|+++|+++|+++|+|+++.... .+ +....
T Consensus 141 ~~~~~~~~~d~~~l~~~l~~--~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~ 218 (390)
T 1d2f_A 141 EKQADGWFCDMGKLEAVLAK--PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWS 218 (390)
T ss_dssp EECSSSEECCHHHHHHHHTS--TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGG
T ss_pred ccCCCccccCHHHHHHHhcc--CCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHH
Confidence 6542 5899999999972 379999999985 6898862 38999999999999999999985311 11 11111
Q ss_pred ccC--C-cEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHH
Q 001989 781 YIG--A-DVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 781 ~~g--~-Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a 856 (985)
.+. . |. +.|++|+|+.| |.++|+++++ +++.+.+.....+. ...++. +.....++
T Consensus 219 ~~~~~~~d~-~~s~sK~~~~~----G~r~G~~~~~~~~~~~~~~~~~~~~----------~~~~~~------~~~~~~a~ 277 (390)
T 1d2f_A 219 NVARGDWAL-LTSGSKSFNIP----ALTGAYGIIENSSSRDAYLSALKGR----------DGLSSP------SVLALTAH 277 (390)
T ss_dssp GTCCSSEEE-EECSHHHHTCG----GGCCEEEEECSHHHHHHHHHHHHTT----------SCCCSC------CHHHHHHH
T ss_pred HcchhhHhh-ccCccHhhccc----ChhheEEEECCHHHHHHHHHHHhhh----------cccCCC------CHHHHHHH
Confidence 122 2 67 88999999543 5568999985 55544332110000 000111 11222223
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCCCcc
Q 001989 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYGFHG 934 (985)
Q Consensus 857 ~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~Gi~~ 934 (985)
.+.+.. +.+.+.+..++..++++++.+.|++ ...+....+.+..+ +.++++. .+.+..++.+.|. ++||.+
T Consensus 278 ~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~l~~~l~~~~gi~v 350 (390)
T 1d2f_A 278 IAAYQQ-GAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYL--AWLDLRP----LNIDDNALQKALIEQEKVAI 350 (390)
T ss_dssp HHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSE--EEEECGG----GCCCHHHHHHHHHHTTCEEC
T ss_pred HHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecCCccEE--EEEEccc----cCCCHHHHHHHHHHHcCEEe
Confidence 333442 3455666677778888999999976 22222222222222 2356541 1256788999998 579987
Q ss_pred CCCC-CC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 935 PTMS-WP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 935 ~~~~-~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.... +. .++++||+++. ++++|++ +++.|+++++++
T Consensus 351 ~~g~~f~~~~~~~~Ris~~~--~~~~l~~--~l~~l~~~l~~~ 389 (390)
T 1d2f_A 351 MPGYTYGEEGRGFVRLNAGC--PRSKLEK--GVAGLINAIRAV 389 (390)
T ss_dssp EEGGGGCGGGTTEEEEECCS--CHHHHHH--HHHHHHHHHHHH
T ss_pred eCccccCCCCCCeEEEEecC--CHHHHHH--HHHHHHHHHHhh
Confidence 5422 21 24799999986 5789999 778888887654
No 232
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.74 E-value=2.4e-17 Score=190.61 Aligned_cols=260 Identities=13% Similarity=0.093 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHhCCCcccee--cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCcccH-----------HHHHH
Q 001989 634 FNNLGEWLCTITGFDSFSLQ--PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNP-----------ATAAM 699 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~--~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~-~~Hg~~~-----------~~a~~ 699 (985)
..++++.+++++|.+.+.++ ++||++|+.+++.++. .++|+||+++ ..|+.+. ..++.
T Consensus 75 ~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all--------~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~ 146 (427)
T 3i16_A 75 RDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNL--------RPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKE 146 (427)
T ss_dssp HHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHC--------CTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGG
T ss_pred HHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHh--------CCCCEEEEeCCCccHHHHHHHhccccchHHHHHH
Confidence 55788899999999887553 6788887755544431 4789999987 7676554 23456
Q ss_pred CCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEc----C-CCccccccCHHHHHHHHHH--cCCEEEEEcccccc
Q 001989 700 CGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTY----P-STHGVYEEGIDEICKIIHD--NGGQVYMDGANMNA 772 (985)
Q Consensus 700 ~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~----p-n~~G~i~~di~eI~~la~~--~galliVD~a~~~~ 772 (985)
.|++++.+|.+++|.+|+++|+++++++ ++|++|++++ | |.+|.+. |+++|+++||+ +|++++||+++...
T Consensus 147 ~G~~~~~v~~~~~g~~D~e~l~~~l~~~-~~tklV~i~~s~~~p~nptg~i~-dl~~i~~la~~~~~g~~livD~a~~~~ 224 (427)
T 3i16_A 147 FGINYKQVDLKEDGKPNLEEIEKVLKED-ESITLVHIQRSTGYGWRRALLIE-DIKSIVDCVKNIRKDIICFVDNCYGEF 224 (427)
T ss_dssp GTCEEEECCCCTTSSCCHHHHHHHHHTC-TTEEEEEEECSCCSSSSCCCCHH-HHHHHHHHHHHHCTTSEEEEECTTTTT
T ss_pred cCCEEEEecCccCCCcCHHHHHHHhhCC-CCCEEEEEEcCCCCCCCCcccHH-HHHHHHHHHHHhCCCCEEEEECCCccc
Confidence 7999999999888999999999999732 5799999998 8 4689998 89999999999 99999999998532
Q ss_pred ccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 773 QVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 773 ~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
.. ...|..+|+|++++|+||+|+.+ |.|.+|++++++++.+.+..+.. ....+...+..++
T Consensus 225 ~~-~~~p~~~gaDiv~~S~sK~lgg~---g~~~gG~i~~~~~li~~l~~~~~-----------~~~~g~~~~~~~~---- 285 (427)
T 3i16_A 225 MD-TKEPTDVGADLIAGSLIKNIGGG---IAPTGGYLAGTKDCIEKTSYRLT-----------VPGIGGECGSTFG---- 285 (427)
T ss_dssp SS-SSCGGGGTCSEEEEETTSGGGTT---TCCSCEEEEECHHHHHHHHHHHS-----------CTTTGGGCCCCTT----
T ss_pred cc-cCCccccCCeEEEecCcccCCCC---CCceEEEEEECHHHHHHHHHhcc-----------cCccCccCCccHH----
Confidence 21 24566789999999999998521 22778999999877665432110 0011111110011
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeE--EEEEecCccccCCCCHHHHHHHHHH
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHE--FIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~--~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
.+|..+. |.+.+..+.++..+++.++++.|++ ++.+ ++++ ....+. +.|.+.. ......+++.|..
T Consensus 286 --~a~~~l~--gl~~~~~r~~~~~~~a~~la~~L~~~g~~V-~p~~-~~~~~~~i~~i~l~~-----~~~~~~f~~~l~~ 354 (427)
T 3i16_A 286 --VVRSMYQ--GLFLAPHISMEALKGAILCSRIMELAGFEV-MPKY-DEKRSDIIQSIKFND-----KDKLIEFCKGIQT 354 (427)
T ss_dssp --CHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTTCEE-ESCT-TSCCSSSCEEEECSS-----HHHHHHHHHHHHH
T ss_pred --HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCee-cCCC-CCCCccEEEEEEECC-----HHHHHHHHHHHhh
Confidence 0223332 2233456677889999999999987 6665 5442 221122 2333321 1235678888888
Q ss_pred CCCc
Q 001989 930 YGFH 933 (985)
Q Consensus 930 ~Gi~ 933 (985)
....
T Consensus 355 ~~~~ 358 (427)
T 3i16_A 355 GSPI 358 (427)
T ss_dssp TCSS
T ss_pred cCcc
Confidence 6443
No 233
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.74 E-value=1.1e-16 Score=183.69 Aligned_cols=280 Identities=15% Similarity=0.137 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHHhCCCcc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCcccHHHHHHCCcE-------
Q 001989 633 MFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPATAAMCGMK------- 703 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~-~~Hg~~~~~a~~~G~~------- 703 (985)
...++++.+++++|.+.. .++.++|++|+..++.+++.+. ++++||+++ .+|+.........|.+
T Consensus 88 ~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~------~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~ 161 (395)
T 1vef_A 88 MRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHT------GRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFL 161 (395)
T ss_dssp HHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHH------SCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGC
T ss_pred HHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHh------CCCeEEEEcCCcCCCchhhhhhcCCcccccccC
Confidence 456889999999976543 3556788888876666554321 456777754 5677776666655654
Q ss_pred -----EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccc
Q 001989 704 -----IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 704 -----vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~~~~~ 773 (985)
+..++. .|+++|+++++ +++++|+++.+ |.+|.+. | +++|.++|+++|+++|+|++|. ++
T Consensus 162 p~~~~~~~~~~-----~d~~~l~~~i~---~~~~~v~~~~~~~~tG~~~-~~~~~l~~i~~l~~~~~~~li~Dea~~-~~ 231 (395)
T 1vef_A 162 PLVEPVEFIPY-----NDVEALKRAVD---EETAAVILEPVQGEGGVRP-ATPEFLRAAREITQEKGALLILDEIQT-GM 231 (395)
T ss_dssp SCSSCEEEECT-----TCHHHHHHHCC---TTEEEEEECSEETTTTSEE-CCHHHHHHHHHHHHHHTCEEEEECTTT-TT
T ss_pred CCCCCeeEeCC-----CcHHHHHHHhc---cCEEEEEEeCccCCCCccC-CCHHHHHHHHHHHHHcCCEEEEEeccc-CC
Confidence 444443 48999999997 78988887654 4589876 6 9999999999999999999985 33
Q ss_pred cCCCCC-----CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 774 VGLTSP-----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 774 ~~l~~p-----g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
+....+ ...++|+++ +||+|+ +|.++|++++++++.+.+..... ..+.+.
T Consensus 232 ~~~g~~~~~~~~~~~~d~~s--~sK~~~-----~g~~~G~~~~~~~~~~~l~~~~~--------------~~~~~~---- 286 (395)
T 1vef_A 232 GRTGKRFAFEHFGIVPDILT--LAKALG-----GGVPLGVAVMREEVARSMPKGGH--------------GTTFGG---- 286 (395)
T ss_dssp TTTSSSSTHHHHTCCCSEEE--ECGGGG-----TTSSCEEEEEEHHHHHTSCTTSS--------------CCSSTT----
T ss_pred ccCCchhHhhhcCCCCCEEE--Eccccc-----CCCceEEEEehHHHHhhhccCCc--------------CCCcCC----
Confidence 211111 123478874 489985 35688999998776655532100 011111
Q ss_pred hhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeee-cCCCCceeeEEEEEecCccccCCCCHHHHHHH
Q 001989 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILF-RGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~-~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~ 926 (985)
+...+.++.+.+..+..+ +..++..++++++.++|++ +.++.. ..+.+. .+.+.++ + +..++.+.
T Consensus 287 ~~~~~~a~~~al~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~---~~~~~~~------~-~~~~l~~~ 353 (395)
T 1vef_A 287 NPLAMAAGVAAIRYLERT---RLWERAAELGPWFMEKLRAIPSPKIREVRGMGL---MVGLELK------E-KAAPYIAR 353 (395)
T ss_dssp CHHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETT---EEEEEES------S-CSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhcCceEEEEEEEE---EEEEEEc------C-hHHHHHHH
Confidence 223333344555554432 3445677888999999976 322211 111111 2345554 1 35789999
Q ss_pred HH-HCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 927 LM-DYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 927 L~-~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
|. ++||.+.... .+.+||+++..++++|+++ +++.|++++
T Consensus 354 l~~~~gi~v~~~~---~~~iRi~~~~~~~~~~i~~--~~~~l~~~l 394 (395)
T 1vef_A 354 LEKEHRVLALQAG---PTVIRFLPPLVIEKEDLER--VVEAVRAVL 394 (395)
T ss_dssp HHHHHCEECEESS---TTEEEECCCTTCCHHHHHH--HHHHHHHHH
T ss_pred HHHHCCeEEecCC---CCEEEEeCCCCCCHHHHHH--HHHHHHHHh
Confidence 99 8999875432 4799999999999999999 777777654
No 234
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.74 E-value=1.3e-16 Score=185.92 Aligned_cols=294 Identities=15% Similarity=0.134 Sum_probs=188.3
Q ss_pred HHHHHHHHHHhCCCc--cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHC-----------
Q 001989 635 NNLGEWLCTITGFDS--FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMC----------- 700 (985)
Q Consensus 635 ~e~~~~la~l~G~~~--~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~----------- 700 (985)
.++.+.|++++..+. ..++.+||++|++++++.+|.|. ++.+||. ...+||....+....
T Consensus 110 ~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t------~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~ 183 (456)
T 4atq_A 110 VAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLAT------GRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFG 183 (456)
T ss_dssp HHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH------CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSC
T ss_pred HHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhh------cCCeEEEEecccCCccccccccccCccccccCCC
Confidence 367788888885432 34677999999999999998763 4567776 678999886654321
Q ss_pred --CcEEEEEcCCC------CCCCCHHHHHHHHHh-----cCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEE
Q 001989 701 --GMKIVSVGTDA------KGNINIEELRKAAEA-----NRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQV 763 (985)
Q Consensus 701 --G~~vv~v~~d~------~g~iD~e~L~~~i~~-----~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~gall 763 (985)
.-.+..+|... ....+.+.+++.++. ..+++++|+++-- ...|++.+ -+++|.++|+++|+++
T Consensus 184 p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gill 263 (456)
T 4atq_A 184 PFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVF 263 (456)
T ss_dssp SCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEE
T ss_pred CccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCce
Confidence 12455666531 122345555555431 2357888888642 34566642 3899999999999999
Q ss_pred EEEccccccccCCCCCCccC--------CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCC
Q 001989 764 YMDGANMNAQVGLTSPGYIG--------ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEK 835 (985)
Q Consensus 764 iVD~a~~~~~~~l~~pg~~g--------~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~ 835 (985)
|+|+++ .|+.+.|.++ +|+++++ |.+ ++|.| +|.+.+++++.+.+...
T Consensus 264 I~DEV~----tG~GRtG~~~a~e~~gv~PDivt~g--K~l----ggg~P-~~av~~~~~i~~~~~~~------------- 319 (456)
T 4atq_A 264 IADEVQ----SGFCRTGEWFAVDHEGVVPDIITMA--KGI----AGGLP-LSAITGRADLLDAVHPG------------- 319 (456)
T ss_dssp EEECTT----TTTTTTSSSSGGGGTTCCCSEEEEC--GGG----GTTSS-CEEEEEEHHHHTTSCTT-------------
T ss_pred Eecccc----cccCCccccccccccCCCCchhhhh--hcc----cCcCC-ceeeEecHHHHhccccc-------------
Confidence 999886 4555565443 7999875 766 34445 55566677766544321
Q ss_pred CCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CC-----ee--ecCCCCceeeEE
Q 001989 836 SQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YP-----IL--FRGVNGTVAHEF 905 (985)
Q Consensus 836 ~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~-----l~--~~~~~~~~~~~~ 905 (985)
...+++.|+++.++++.+.|..+..+++.+ +..+..+++.++|++. +. ++ +.+. + .+ +
T Consensus 320 -----~~~~Tf~gnpla~aaala~L~~i~~~~l~~---~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~-G-l~--~ 387 (456)
T 4atq_A 320 -----GLGGTYGGNPVACAAALAAIDTMEQHDLNG---RARHIEELALGKLRELAAELSAGGGSVVGDIRGR-G-AM--L 387 (456)
T ss_dssp -----SSCCSSSSCHHHHHHHHHHHHHHHHTTHHH---HHHHHHHHHHHHHHHHHHHCC-----CEEEEEEE-T-TE--E
T ss_pred -----CCCCCCCCChHHHHhhHHHHHHHhhccHHH---HHHHHHHHHHHHHHHHHHhcccccCCceEEeeec-c-eE--E
Confidence 012345678888888999999998877654 4556677777777641 11 11 0111 1 11 2
Q ss_pred EEEecCcc--ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 906 IVDLRGLK--NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 906 iv~~~~~~--~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
-+++..-. .........+.++|.++|+++..+. +..+.||++|+...|++|||+ ++++|+++++.
T Consensus 388 giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g-~~~~~irl~PpL~it~~~id~--~l~~l~~al~a 454 (456)
T 4atq_A 388 AIELVQPGSKEPNAELTKAVAAACLKEGVIILTCG-TYGNVIRLLPPLVISDELLID--GLEVLAAAIKA 454 (456)
T ss_dssp EEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEEC-TTSCEEEECCCTTCCHHHHHH--HHHHHHHHHHH
T ss_pred EEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEecC-CCCCEEEEECCCCCCHHHHHH--HHHHHHHHHHh
Confidence 23332100 0000014568888999999875432 224899999999999999999 78888888763
No 235
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.74 E-value=1.6e-16 Score=186.41 Aligned_cols=302 Identities=16% Similarity=0.147 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC--------
Q 001989 632 EMFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG-------- 701 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G-------- 701 (985)
+...+++++++++++.+. ..++.+||++|+++++++++.+...+|..++++||+ ...+||.........|
T Consensus 94 ~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~ 173 (459)
T 4a6r_A 94 PAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQG 173 (459)
T ss_dssp HHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhcccc
Confidence 345688899999987644 346678999999999998887766666445678877 5678887655543322
Q ss_pred ----cEEEEEcCCC-----CCCCC--------HHHHHHHHHhcC-CCEEEEEEEcCC-CccccccC----HHHHHHHHHH
Q 001989 702 ----MKIVSVGTDA-----KGNIN--------IEELRKAAEANR-DNLSTLMVTYPS-THGVYEEG----IDEICKIIHD 758 (985)
Q Consensus 702 ----~~vv~v~~d~-----~g~iD--------~e~L~~~i~~~~-~~t~~Vvv~~pn-~~G~i~~d----i~eI~~la~~ 758 (985)
..+..++... +. .| +++|++++++.. +++++|+++.++ +.|.+. + +++|.++|++
T Consensus 174 ~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~-~~~~~l~~l~~l~~~ 251 (459)
T 4a6r_A 174 DLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIV-PPATYWPEIERICRK 251 (459)
T ss_dssp CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBC-CCTTHHHHHHHHHHH
T ss_pred CCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCccc-CCHHHHHHHHHHHHH
Confidence 1344455321 12 45 889999987432 356666665443 466665 4 9999999999
Q ss_pred cCCEEEEEccccccccCCCCCCc--------cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCC--CccccCC
Q 001989 759 NGGQVYMDGANMNAQVGLTSPGY--------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS--HPVVSTG 828 (985)
Q Consensus 759 ~galliVD~a~~~~~~~l~~pg~--------~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~--~~~g~~~ 828 (985)
+|+++|+|+++. ++.+.|. ..+|++++| |+++ +||.++|++++++++.+.+.. ...
T Consensus 252 ~~~llI~DEv~~----g~gr~G~~~~~~~~~~~pdi~t~s--K~l~----gg~~~lg~v~~~~~i~~~~~~~~~~~---- 317 (459)
T 4a6r_A 252 YDVLLVADEVIC----GFGRTGEWFGHQHFGFQPDLFTAA--KGLS----SGYLPIGAVFVGKRVAEGLIAGGDFN---- 317 (459)
T ss_dssp TTCEEEEECTTT----TTTTTSSSSHHHHHTCCCSEEEEC--GGGG----TTSSCCEEEEECHHHHHHHHHHCTTH----
T ss_pred cCCEEEEecccc----CCCcccccchHhhcCCCCCeeehh--hhhc----CCCCCccceeeCHHHHHHhhcCCCcc----
Confidence 999999999874 2222322 236888764 8863 355788999999877654421 100
Q ss_pred CCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHH-HHHHHHHHHh-hc--cCC-ee-ecCCCCcee
Q 001989 829 GIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAI-LNANYMAKRL-EK--HYP-IL-FRGVNGTVA 902 (985)
Q Consensus 829 ~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~-~~a~~l~~~L-~~--g~~-l~-~~~~~~~~~ 902 (985)
..+++.+++++++++.+.|..+..+.+. ++.. ++.+++++.| +. .+. +. +.+ .+. +
T Consensus 318 -------------~~~t~~~~~~~~aaa~aal~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~g~-~ 379 (459)
T 4a6r_A 318 -------------HGFTYSGHPVCAAVAHANVAALRDEGIV---QRVKDDIGPYMQKRWRETFSRFEHVDDVRG-VGM-V 379 (459)
T ss_dssp -------------HHHHHCSCHHHHHHHHHHHHHHHHTCHH---HHHHHTHHHHHHHHHHHHHTTCTTEEEEEE-ETT-E
T ss_pred -------------cCCCCCCCHHHHHHHHHHHHHHhcchHH---HHHHHHHHHHHHHHHHHHHhcCCCeEEEEE-EEE-E
Confidence 0011223445556666677766444443 3445 5666677666 32 122 11 111 112 1
Q ss_pred eEEEEEecCccc------cCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 903 HEFIVDLRGLKN------TAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 903 ~~~iv~~~~~~~------~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+.+.+..-.. .......++++.|.++|+.+.... +.+||+|+...|+|||++ +++.|+++++++.
T Consensus 380 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g----~~iRi~~~~~~t~e~i~~--~l~~l~~~l~~~~ 450 (459)
T 4a6r_A 380 --QAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACG----DHIVSAPPLVMTRAEVDE--MLAVAERCLEEFE 450 (459)
T ss_dssp --EEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEET----TEEEECCCTTCCHHHHHH--HHHHHHHHHHHHH
T ss_pred --EEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecCC----CEEEEECCCCCCHHHHHH--HHHHHHHHHHHHH
Confidence 2233321000 000015688999999999875432 799999999999999999 7888888887653
No 236
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.74 E-value=5.8e-17 Score=186.04 Aligned_cols=273 Identities=17% Similarity=0.200 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+. .+.+++|++|+..++.++ ..++++||+++..|+..... ++..|++++.++.
T Consensus 61 ~~~l~~~la~~~g~~~-~i~~~sG~~ai~~~~~~~--------~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~ 131 (389)
T 3acz_A 61 VEQFEEMVCSIEGAAG-SAAFGSGMGAISSSTLAF--------LQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDT 131 (389)
T ss_dssp HHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHTTT--------CCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECT
T ss_pred HHHHHHHHHHHhCCCe-EEEeCCHHHHHHHHHHHH--------hCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECC
Confidence 5578899999999874 456677887765444332 13678999988877755443 4678999999987
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
.|+++|+++++ +++++|++++|+ ++|.+. |+++|+++|+++|+++++|+++..+. ...|..+++|+++
T Consensus 132 -----~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~~~~~~~~~livD~~~~~~~--~~~~~~~~~di~~ 200 (389)
T 3acz_A 132 -----SDVEKVKAAWK---PNTKMVYLESPANPTCKVS-DIKGIAVVCHERGARLVVDATFTSPC--FLKPLELGADIAL 200 (389)
T ss_dssp -----TCHHHHHHTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHTCEEEEECTTTCTT--TCCGGGTTCSEEE
T ss_pred -----CCHHHHHHhcC---CCCeEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCcccc--ccCccccCCeEEE
Confidence 38999999997 789999999984 699998 89999999999999999999985332 2345567899999
Q ss_pred eCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 789 LNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
.|+||+|+.| |++-+|++++++ ++.+.+..... ..+...+ +. .+|+.+..+ +.
T Consensus 201 ~S~sK~~~~~---~~~~~G~v~~~~~~~~~~l~~~~~-------------~~g~~~~-----~~---~~~~~~~~l--~~ 254 (389)
T 3acz_A 201 HSVSKYINGH---GDVIGGVSSAKTAEDIATIKFYRK-------------DAGSLMA-----PM---DAFLCARGM--KT 254 (389)
T ss_dssp EETTTTTTCS---SCCCCEEEEESSHHHHHHHHHHHH-------------HHCCCCC-----HH---HHHHHHHHH--TT
T ss_pred ECChhhccCC---CCceeEEEEECcHHHHHHHHHHHH-------------hcCCCCC-----HH---HHHHHHcCc--cH
Confidence 9999998532 222248999988 76554321100 0011111 11 123333333 23
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC---eeecCCC------------CceeeEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001989 868 LTEASKIAILNANYMAKRLEKHYP---ILFRGVN------------GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g~~---l~~~~~~------------~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi 932 (985)
+....++..+++..+.+.|++... +.+++-. ......+.+.++ + .+++.+.|.+.|+
T Consensus 255 l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~------~--~~~~~~~l~~~~i 326 (389)
T 3acz_A 255 LPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMK------S--FEAAKKLMEHLKV 326 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES------S--HHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEEC------C--HHHHHHHHHhCCC
Confidence 444455666777888877765211 1111100 001122344443 2 5667777777787
Q ss_pred ccCCC---------CCC-----------------C-CCEEEEeccCCCCHHHHHH
Q 001989 933 HGPTM---------SWP-----------------V-PGTLMIEPTESESKSWTGI 960 (985)
Q Consensus 933 ~~~~~---------~~p-----------------~-~~~lris~t~~~t~eeId~ 960 (985)
..... .+| + ++.+|+|++..+++++|+.
T Consensus 327 ~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~~~~li~~ 381 (389)
T 3acz_A 327 CTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIAD 381 (389)
T ss_dssp SEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSCHHHHHHH
T ss_pred cEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHH
Confidence 64221 111 1 4799999999888888887
No 237
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.74 E-value=2.9e-17 Score=189.91 Aligned_cols=301 Identities=12% Similarity=0.085 Sum_probs=185.3
Q ss_pred hhHHHHHHHHHHHHHHHhCCCc--cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDS--FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~--~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv 705 (985)
.|..++.+++.+++....+.+. ..++.++|++|+..++.++. .++|+|+++.+.|..+...++..|++++
T Consensus 80 ~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~ 151 (418)
T 3rq1_A 80 AGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYT--------EPGDEVLTADWYWGAYRVICSDTGRTLV 151 (418)
T ss_dssp TCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHS--------CTTCEEEEESSCCTHHHHHHHHTTCEEE
T ss_pred CChHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHhc--------CCCCEEEECCCCchhHHHHHHHcCCEEE
Confidence 4555555555555544445441 23455666666654444321 4789999999888888888889999999
Q ss_pred EEcCC-CCCCCCHHHHHHHHHhc-CCCEE-EEEEEcC--CCccccccC---HHHHHHHHH------HcCCEEEEEccccc
Q 001989 706 SVGTD-AKGNINIEELRKAAEAN-RDNLS-TLMVTYP--STHGVYEEG---IDEICKIIH------DNGGQVYMDGANMN 771 (985)
Q Consensus 706 ~v~~d-~~g~iD~e~L~~~i~~~-~~~t~-~Vvv~~p--n~~G~i~~d---i~eI~~la~------~~galliVD~a~~~ 771 (985)
.+|++ +++.+|+++|++++++. .++++ +|++++| |++|.+. + +++|+++|+ ++|+++++|+++.
T Consensus 152 ~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~- 229 (418)
T 3rq1_A 152 TYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSI-EDKDWDSILNFLKDLVAIGRNNVIIGIDVAYL- 229 (418)
T ss_dssp EECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHTSSCEEEEEEECTTG-
T ss_pred EEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHhhhccCCCeEEEEecccc-
Confidence 99984 45789999999999731 01444 7888888 5799987 5 455556666 8999999999973
Q ss_pred cccC-------C-CCCCccCCc---EEEeCCcccccccCCCCCCceEEEEE---cccccCcCCCCccccCCCCCCCCCCC
Q 001989 772 AQVG-------L-TSPGYIGAD---VCHLNLHKTFCIPHGGGGPGMGPIGV---KKHLAPFLPSHPVVSTGGIPAPEKSQ 837 (985)
Q Consensus 772 ~~~~-------l-~~pg~~g~D---i~~~s~hK~l~~p~g~GGPg~G~i~~---~~~l~~~lp~~~~g~~~~~~~~~~~~ 837 (985)
.+.. + ........| +++.|++|+|++ .|.++|++++ ++++.+.+........ + .
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-------~-~ 297 (418)
T 3rq1_A 230 DYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTM----YGQRVGAMIGISDDEEIADEFFEVNKSTS-------R-A 297 (418)
T ss_dssp GGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTC----CSSCCEEEEEEESSHHHHHHHHHHHHHHH-------H-H
T ss_pred cccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcC----cCCcceEEEEEeCCHHHHHHHHHHHHHHH-------h-h
Confidence 1111 0 001112234 677899999854 3678999988 6666544321100000 0 0
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHHhc-----HHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecC
Q 001989 838 PLGTIAAAPWGSALILPISYTYIAMMG-----SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRG 911 (985)
Q Consensus 838 ~~~~i~s~~~g~~~~~~~a~a~l~~lg-----~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~ 911 (985)
.+++.+ .....++...+.... .+.++++.++..++++++.+.|++ ++++. .+.+.++ +.+++
T Consensus 298 ~~~~~~------~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~--~~~~~-- 365 (418)
T 3rq1_A 298 TWSNIC------RPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPML--PYRGGFF--ITIPT-- 365 (418)
T ss_dssp HTSSCC------HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC--CCCSSSE--EEEEC--
T ss_pred ccCCCc------hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--CCCceEE--EEcCC--
Confidence 001111 111112222222110 112234445667778888888876 55542 2223222 22333
Q ss_pred ccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 912 LKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 912 ~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+..++++.|.++||.+... .+.+||++. ..++++|++ +++.|+++++++.
T Consensus 366 ------~~~~~~~~~l~~~gi~v~~g----~~~iRis~~-~~~~~~i~~--~~~~l~~~l~~~~ 416 (418)
T 3rq1_A 366 ------DSANAICEELKKEHIYVIAL----ANGIRIAAC-GIPKCQMTG--LAEKIYNAMKSLG 416 (418)
T ss_dssp ------TTHHHHHHHHHHTTEECEEC----SSEEEEEGG-GSCHHHHTT--HHHHHHHHHHHTT
T ss_pred ------CCHHHHHHHHHhCCEEEecC----CCCeEEEEe-cCCHHHHHH--HHHHHHHHHHHHh
Confidence 25788999999999987532 478999976 569999999 8899999888764
No 238
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.74 E-value=4.5e-17 Score=186.15 Aligned_cols=301 Identities=11% Similarity=0.022 Sum_probs=184.4
Q ss_pred HHHHHHHH-HHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCC-
Q 001989 634 FNNLGEWL-CTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA- 711 (985)
Q Consensus 634 ~~e~~~~l-a~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~- 711 (985)
..++++.+ ++++|.....+.+++|++|+..++.++ +.++||+||++...|..+...+...|++++.+++++
T Consensus 38 ~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l-------~~~~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~~ 110 (377)
T 3ju7_A 38 NQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLK-------KRKKGKYALMPSFTFPATPLAAIWCGLEPYFIDISID 110 (377)
T ss_dssp HHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHH-------SCTTCCEEEEESSSCTHHHHHHHHTTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHc-------CCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCCc
Confidence 45788999 999993223466678887765444432 124789999999988888777888999999999974
Q ss_pred CCCCCHHHHHHHH-HhcCCC--EEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-CCCccCCcEE
Q 001989 712 KGNINIEELRKAA-EANRDN--LSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-SPGYIGADVC 787 (985)
Q Consensus 712 ~g~iD~e~L~~~i-~~~~~~--t~~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~-~pg~~g~Di~ 787 (985)
++.+|+++|++++ + ++ |++|++++ .+|... |+++|.++|+ +|+++|+|++|..+..... ..+....|+.
T Consensus 111 ~~~~d~~~l~~~i~~---~~~~tk~v~~~~--~~G~~~-~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~ 183 (377)
T 3ju7_A 111 DWYMDKTVLWDKIEE---LKEEVAIVVPYA--TFGSWM-NLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMI 183 (377)
T ss_dssp TCSBCHHHHHHHHHH---HGGGEEEECCBC--GGGBCC-CCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEE
T ss_pred cCCcCHHHHHHHHhc---CCCCceEEEEEC--CCCCcc-CHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcEE
Confidence 6899999999998 5 45 99888654 479887 8999999999 9999999999864321111 1111225776
Q ss_pred EeC--CcccccccCCCCCCceEEEEEcc-cccCcCCC-CccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh
Q 001989 788 HLN--LHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPS-HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM 863 (985)
Q Consensus 788 ~~s--~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~-~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l 863 (985)
++| .||+|+ ++.+|++++++ ++.+.+.. +..|..... .. .+.+. +... ....++ ..+.
T Consensus 184 ~~S~~~~K~l~------~g~gG~~~~~~~~l~~~~~~~~~~g~~~~~-~~-~~~g~-~~~~----~~~~aa---~~~~-- 245 (377)
T 3ju7_A 184 IYSFHATKPFG------IGEGGLIYSKNEEDIQRIKRMGNFGFDTNR-EC-TMMGF-NCKM----SEYAAA---IGIA-- 245 (377)
T ss_dssp EEECBTTSSSC------CBSCEEEEESCHHHHHHHHHHTBTTBCTTS-CB-CSSCC-BCCC----CHHHHH---HHHH--
T ss_pred EEECCCCCcCC------CCCcEEEEECCHHHHHHHHHHHhcCCCCCC-ce-eeccc-cCCC----CHHHHH---HHHH--
Confidence 666 568874 22456676653 33322210 011110000 00 00011 1110 111111 1111
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhcc--CCeeecCC-CCceeeE-EEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC
Q 001989 864 GSKGLTEASKIAILNANYMAKRLEKH--YPILFRGV-NGTVAHE-FIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 864 g~eGl~~~~~~~~~~a~~l~~~L~~g--~~l~~~~~-~~~~~~~-~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~ 939 (985)
+.+.+.+..++..++++++.+.|++. ..+.+... .....+. +.+.++ .+.+.+++.+.|.++||.+...+.
T Consensus 246 ~l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~L~~~gI~~~~~~~ 320 (377)
T 3ju7_A 246 TMKKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCP-----EEVRNKQVIEDLKKQKIEARLYFS 320 (377)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECC-----TTSCHHHHHHHHHTTTBCCBCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeC-----ChhhHHHHHHHHHHCCCceecccC
Confidence 12456666777888889999998762 11211111 1111222 234443 123588999999999998653210
Q ss_pred -C---------------------CCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 940 -P---------------------VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 940 -p---------------------~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
| ....|++.+....|++|+++ +++.|++++++
T Consensus 321 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~--v~~~l~~~~~~ 374 (377)
T 3ju7_A 321 PSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQ--IVICLGQKVVS 374 (377)
T ss_dssp SCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHH--HHHHHTC----
T ss_pred CccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHH--HHHHHHHHHhc
Confidence 1 02579999999999999999 77777776654
No 239
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.74 E-value=3.7e-17 Score=185.38 Aligned_cols=285 Identities=12% Similarity=0.043 Sum_probs=183.3
Q ss_pred HHHHHHHHHHhCCCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCC
Q 001989 635 NNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g 713 (985)
.++++.+++++|.+... ++.++|++++..++.++ ++++|+++.+.|..+...++..|++++.+|.+++.
T Consensus 62 ~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~----------~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~ 131 (364)
T 1lc5_A 62 FHLHQALARHHQVPASWILAGNGETESIFTVASGL----------KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREAD 131 (364)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH----------CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGG
T ss_pred HHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc----------CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCccc
Confidence 47888999999987644 44566666664433322 23789998777767777778889999999987522
Q ss_pred CCC-HHHHHHHHHhcCCCEEEEEEEcCC-CccccccC---HHHHHHHHHHcCCEEEEEcccccccc-C---CCCCCccCC
Q 001989 714 NIN-IEELRKAAEANRDNLSTLMVTYPS-THGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQV-G---LTSPGYIGA 784 (985)
Q Consensus 714 ~iD-~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d---i~eI~~la~~~galliVD~a~~~~~~-~---l~~pg~~g~ 784 (985)
.++ ++++.+.++ +++++|++++|+ ++|.+. + +++|+++|+++|+++++|+++..... + +...+..+.
T Consensus 132 ~~~~l~~~~~~~~---~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 207 (364)
T 1lc5_A 132 GWQLTDAILEALT---PDLDCLFLCTPNNPTGLLP-ERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPH 207 (364)
T ss_dssp TTCCCTTHHHHCC---TTCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTT
T ss_pred ccchhHHHHHhcc---CCCCEEEEeCCCCCCCCCC-CHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCC
Confidence 233 455555554 678889999995 689987 5 99999999999999999999852211 1 111134567
Q ss_pred cEEEeCCcccccccCCCCCCceEEEE-EcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh
Q 001989 785 DVCHLNLHKTFCIPHGGGGPGMGPIG-VKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM 863 (985)
Q Consensus 785 Di~~~s~hK~l~~p~g~GGPg~G~i~-~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l 863 (985)
|+++.|+||+|+. +|.++|+++ .++++.+.+.... .+.+. +.....++.++|..
T Consensus 208 ~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~l~~~~--------------~~~~~------~~~~~~~~~~~l~~- 262 (364)
T 1lc5_A 208 IWVLRSLTKFYAI----PGLRLGYLVNSDDAAMARMRRQQ--------------MPWSV------NALAALAGEVALQD- 262 (364)
T ss_dssp EEEEEESTTTTTC----TTTCCEEEECCCHHHHHHHHHHS--------------CTTCS------CHHHHHHHHHGGGC-
T ss_pred EEEEEECchhhcC----CccceEEEEECCHHHHHHHHHhC--------------CCCCC------CHHHHHHHHHHHhC-
Confidence 8999999999854 356689999 7877654432100 00111 11222222233332
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC-CCC--
Q 001989 864 GSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM-SWP-- 940 (985)
Q Consensus 864 g~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~-~~p-- 940 (985)
.+.+++..++..++++++.+.|++..++...++.+. + +.+.++ + +..++.+.|.++||.+... .++
T Consensus 263 -~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~-~--~~~~~~------~-~~~~l~~~l~~~gi~v~~g~~~~~~ 331 (364)
T 1lc5_A 263 -SAWQQATWHWLREEGARFYQALCQLPLLTVYPGRAN-Y--LLLRCE------R-EDIDLQRRLLTQRILIRSCANYPGL 331 (364)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSSS-E--EEEEES------C-TTCCHHHHHHTTTEECEECTTSTTC
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCCCe-E--EEEECC------C-cHHHHHHHHHHCCcEEeeCcccCCC
Confidence 245666667778888999999976323322222222 2 334554 1 2456889999999987542 232
Q ss_pred CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 941 VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 941 ~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.++++||++ .+.+|+|+ +++.|+++++++
T Consensus 332 ~~~~iRis~---~~~~~~~~--l~~~l~~~~~~~ 360 (364)
T 1lc5_A 332 DSRYYRVAI---RSAAQNER--LLAALRNVLTGI 360 (364)
T ss_dssp CTTEEEEEC---CCHHHHHH--HHHHHHHHC---
T ss_pred CCCEEEEEe---CCHHHHHH--HHHHHHHHhhcc
Confidence 147999997 47999999 778888776654
No 240
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.74 E-value=2.3e-16 Score=179.17 Aligned_cols=279 Identities=15% Similarity=0.141 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
...++++.+|+++|.+ ++.++++||.++++++.+++. ++||+|+++...|+++...++. .|++++.++.
T Consensus 39 ~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~~~~~~~--~~gd~v~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~ 110 (374)
T 3uwc_A 39 ELEKFEKRFAALHNAP--HAIGVGTGTDALAMSFKMLNI--GAGDEVITCANTFIASVGAIVQ----AGATPVLVDSENG 110 (374)
T ss_dssp HHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTTC--CTTCEEEEESSSCHHHHHHHHH----TTCEEEEECBCTT
T ss_pred hHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCC--CCCCEEEECCCccHHHHHHHHH----cCCEEEEEecCCC
Confidence 3557889999999987 577889999888777766533 3889999999999999988753 5888888765
Q ss_pred -----hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCccc--ceEEEecC---c
Q 001989 289 -----KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELG--ADIVVGSA---Q 357 (985)
Q Consensus 289 -----~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~G--aDi~v~s~---k 357 (985)
+++++ +++++++|+++ |++|.+.|+++|.++|+++|+++++| +.++.|.......+| +|+++.++ |
T Consensus 111 ~~~d~~~l~~~~~~~~~~v~~~--n~~G~~~~~~~i~~~~~~~~~~li~D-~~~~~g~~~~~~~~~~~~d~~~~s~~~~K 187 (374)
T 3uwc_A 111 YVIDPEKIEAAITDKTKAIMPV--HYTGNIADMPALAKIAKKHNLHIVED-ACQTILGRINDKFVGSWGQFACFSLHPLK 187 (374)
T ss_dssp SSBCGGGTGGGCCTTEEEECCB--CGGGCCCCHHHHHHHHHHTTCEEEEE-CTTCTTCEETTEETTSSSSEEEEECSSSS
T ss_pred CCcCHHHHHHhCCCCceEEEEe--CCcCCcCCHHHHHHHHHHcCCEEEEe-CCCccCceeCCeeccccccEEEEeCCCCC
Confidence 34555 77889888833 57899999999999999999999995 344554332223344 69999984 5
Q ss_pred cccccCCCCCCcEEEEEEch-hhHhcCCCce-eeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHH
Q 001989 358 RFGVPMGYGGPHAAFLATSQ-EYKRMMPGRI-VGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYA 435 (985)
Q Consensus 358 ~lg~P~~~GGP~~G~l~~~~-~~~~~lp~~~-vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l 435 (985)
.|++ .+ .+|++.+++ ++.+.+.... .|.. ..|.. ...+.|. .+.++.+++
T Consensus 188 ~l~~-~g----~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~-----------~~~~~~~----~~~~~~aa~-- 239 (374)
T 3uwc_A 188 NLNV-WS----DAGVIITHSDEYAEKLRLYRNHGLI------NRDVC-----------VEYGINC----RMDTIQAVI-- 239 (374)
T ss_dssp SSCC-SS----CCEEEEESCHHHHHHHHHHTBTTEE------ETTEE-----------SSCCCBC----BCCHHHHHH--
T ss_pred cCCc-cc----eeEEEEeCCHHHHHHHHHHHhcCcc------ccCcc-----------ccccccC----CCCHHHHHH--
Confidence 5532 11 246777654 4544332111 0100 00110 0011111 111223333
Q ss_pred HHhCcchHHHHHHHHHHHHHHHHHHHhcCCC-eEEcCCC-----CcceEEEecCCHHHHHHHHHHcCceeeeec------
Q 001989 436 VYHGPEGLKTIAQRVHGLAGTFALGLKKLGT-VEVQGLP-----FFDTVKVKCADAHAIASAAYKIEMNLRVVD------ 503 (985)
Q Consensus 436 ~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~-~~~~~~~-----~~~~~~~~~~~~~~v~~~L~~~GI~~~~~~------ 503 (985)
.+...++++++.++..++++++++.|+++++ +++...+ .+..+.+..++..++.+.|.++||.++...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~~~~ 319 (374)
T 3uwc_A 240 ANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVKYRDQLFQYLKDNGIEVKIHYPIAMHL 319 (374)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEETTHHHHHHHHHHTTBCCBCSCSSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcCCHHHHHHHHHHCCCccccCCCCcccc
Confidence 2233467888999999999999999999876 7765321 223455555458899999999999764321
Q ss_pred ---------------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 504 ---------------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 ---------------------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.+|++++..+|++|||+++++|.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~ 366 (374)
T 3uwc_A 320 QPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVRE 366 (374)
T ss_dssp SGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred ChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHH
Confidence 16799999999999999999999974
No 241
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.74 E-value=6.7e-16 Score=174.02 Aligned_cols=298 Identities=8% Similarity=0.008 Sum_probs=205.0
Q ss_pred CCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhh
Q 001989 172 GMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ 251 (985)
Q Consensus 172 G~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~ 251 (985)
+.|..+...|+.+.+++.+.-. ....|. . ....++++.+|+++|.++.++.+++|+|.+++.++.++.
T Consensus 22 ~~~~~~~~~~~~v~~a~~~~~~---~~~~y~-~------~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l~-- 89 (354)
T 3ly1_A 22 NFNENPLGMSPKAQAAARDAVV---KANRYA-K------NEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYA-- 89 (354)
T ss_dssp SSCCCSSCCCHHHHHHHHHTGG---GTTSCC-H------HHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHHC--
T ss_pred cCCCCCCCCCHHHHHHHHHHHh---hCcCCC-C------CchHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHHh--
Confidence 3344444567777656554322 223332 1 134578899999999988899999999988887776542
Q ss_pred cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch--------hhhc-cC--CCEeEEEEEcC-CCCeeeccHHHHH
Q 001989 252 KGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--------DIDY-KS--GDVCGVLVQYP-GTEGEVLDYGDFI 319 (985)
Q Consensus 252 ~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~--------~l~~-l~--~~t~~V~v~~p-n~~G~v~di~~I~ 319 (985)
++||+|+++...|+++...++. .|++++.++.+ +|++ ++ +++++|++++| |.+|.+.|++++.
T Consensus 90 -~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~ 164 (354)
T 3ly1_A 90 -SLEAQLVIPELTYGDGEHFAKI----AGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIE 164 (354)
T ss_dssp -CTTCEEEEESSSCTHHHHHHHH----TTCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHHH
T ss_pred -CCCCeEEECCCCchHHHHHHHH----cCCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHHH
Confidence 3889999999999998887753 58888888653 4555 65 78999999998 6799999988888
Q ss_pred HHHHh--CCcEEEEEecCccccCCC----CC----Ccc-cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCce
Q 001989 320 KNAHA--NGVKVVMATDLLALTILK----PP----GEL-GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRI 387 (985)
Q Consensus 320 ~~a~~--~galliV~a~~~~lg~l~----~~----~~~-GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~ 387 (985)
++++. +|+++++|. .++..... .+ ..+ +.+++++|. |.|+. +|..+|++++++++.+.+...
T Consensus 165 ~l~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~~~~~- 238 (354)
T 3ly1_A 165 PWIASKPANTMFIVDE-AYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAM----AGMRVGYAVAHPTVIALMGRY- 238 (354)
T ss_dssp HHHHTCCTTEEEEEEC-TTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCC----GGGCCEEEECCHHHHHHHGGG-
T ss_pred HHHHhCCCCeEEEEec-cHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccC----hhhhheeeecCHHHHHHHHHh-
Confidence 88887 899999953 33322121 11 123 667999997 87753 234579999988877665110
Q ss_pred eeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCe
Q 001989 388 VGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 388 vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~ 467 (985)
. .. .+.|. ....+..++ +...+.++++.++..++.+++.+.|+++| +
T Consensus 239 ---------~---------------~~-~~~~~---~~~~a~~~~----l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~ 285 (354)
T 3ly1_A 239 ---------V---------------AG-EKINF---SGVDAALAS----MNDSAFITYSKKSNDVSRQILLKALEDLK-L 285 (354)
T ss_dssp ---------T---------------TC-SCCCH---HHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHHHHHT-C
T ss_pred ---------c---------------CC-CCCCH---HHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHHHHHHHCC-C
Confidence 0 00 11111 112122221 22235678889999999999999999886 7
Q ss_pred EEcCCCCcceEEEecCC-HHHHHHHHHHcCceee-ee--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 468 EVQGLPFFDTVKVKCAD-AHAIASAAYKIEMNLR-VV--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 468 ~~~~~~~~~~~~~~~~~-~~~v~~~L~~~GI~~~-~~--~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++... ...-+.+..+. ..++.+.|.++||.++ .. .++.+|++++ |++|+++++++|..
T Consensus 286 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~~gi~v~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~ 347 (354)
T 3ly1_A 286 PYLPS-EGNFVFHQLVVPLKDYQTHMADAGVLIGRAFPPADNWCRISLG---TPQEMQWVADTMRE 347 (354)
T ss_dssp CBCCC-CSSEEEEECSSCHHHHHHHHHHTTEECCCCCTTCTTEEEEECC---CHHHHHHHHHHHHH
T ss_pred eECCC-CceEEEEECCCCHHHHHHHHHHCCEEEeecCCCCCCEEEEEcC---CHHHHHHHHHHHHH
Confidence 76532 22235566664 8899999999999886 11 2578999976 89999999999874
No 242
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.74 E-value=2.8e-16 Score=180.69 Aligned_cols=277 Identities=14% Similarity=0.068 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-- 288 (985)
+...++++.+++++|.+ ...++.+|+.+++.++.++ . ++||+|++++..|+++...++.+++..|++++.++.
T Consensus 64 ~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~-~--~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d 138 (398)
T 2rfv_A 64 PTTDALEKKLAVLERGE--AGLATASGISAITTTLLTL-C--QQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAK 138 (398)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHH-C--CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTS
T ss_pred hHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHH-h--CCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 44567889999999987 4667778887777666554 2 378999999999999999886555567999999876
Q ss_pred -hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCC
Q 001989 289 -KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMG 364 (985)
Q Consensus 289 -~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~ 364 (985)
+++++ +++++++|++.+| |.+|.+.|+++|+++||++|+++++| +..+.+....+..+|+|+++.|. |.|++|
T Consensus 139 ~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-e~~~~~~~~~~~~~~~di~~~s~sK~~~~~-- 215 (398)
T 2rfv_A 139 PEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVD-NTFMSPYCQQPLQLGADIVVHSVTKYINGH-- 215 (398)
T ss_dssp HHHHHHHCCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEE-CTTTCTTTCCGGGGTCSEEEEETTTTTTCS--
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEE-CCCcccccCCchhhCCcEEEEeCcccccCC--
Confidence 45555 7889999999998 78999999999999999999999995 45565555556678999999998 777643
Q ss_pred CCCCcEEEEEEchhhHh-cCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchH
Q 001989 365 YGGPHAAFLATSQEYKR-MMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGL 443 (985)
Q Consensus 365 ~GGP~~G~l~~~~~~~~-~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl 443 (985)
|+|-+|++++++++++ .+.....+ + | .++.|. ...++..+++ +.+
T Consensus 216 -g~~~~G~~~~~~~~~~~~~~~~~~~----------~------------~-~~~~~~---~~~~~~~~~l-------~~~ 261 (398)
T 2rfv_A 216 -GDVIGGIIVGKQEFIDQARFVGLKD----------I------------T-GGCMSP---FNAWLTLRGV-------KTL 261 (398)
T ss_dssp -SCCCCEEEEECHHHHHHHHHTHHHH----------T------------T-CCCCCH---HHHHHHHHHH-------TTH
T ss_pred -CCceEEEEEECHHHHHHHHHHHHHh----------C------------C-CCCCCH---HHHHHHHhhh-------hhH
Confidence 3333489999987765 33110000 0 0 111111 1111221211 234
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEc--CC---------------CCcceEEEecCC-HHHHHHHHHH---cCceeee-
Q 001989 444 KTIAQRVHGLAGTFALGLKKLGTVEVQ--GL---------------PFFDTVKVKCAD-AHAIASAAYK---IEMNLRV- 501 (985)
Q Consensus 444 ~~i~~~~~~~a~~l~~~L~~~g~~~~~--~~---------------~~~~~~~~~~~~-~~~v~~~L~~---~GI~~~~- 501 (985)
....++..+++.++.+.|++.+.+.-+ .. .....+.|.+++ ..+..+.+.+ .|+.++.
T Consensus 262 ~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~G 341 (398)
T 2rfv_A 262 GIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLG 341 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHTTCSSSEECSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCHHHHHHHHHhCCcceeccCCC
Confidence 445556677888888888876423211 10 123346666665 2333333322 3443211
Q ss_pred --------------------------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 --------------------------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 --------------------------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..++.+|+|++..+++++|++++++|..
T Consensus 342 ~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 342 DTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRK 395 (398)
T ss_dssp SSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred CcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Confidence 1157899999999999999999999863
No 243
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.73 E-value=9.1e-17 Score=180.94 Aligned_cols=297 Identities=12% Similarity=0.060 Sum_probs=199.7
Q ss_pred CCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEE
Q 001989 179 HVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTF 258 (985)
Q Consensus 179 ~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~V 258 (985)
..|+.+.+++.+. +..|.+ .+|..+...++++.+++++|.+..++.+++|+|.+++.++.++. ++||+|
T Consensus 25 ~~~~~v~~a~~~~---~~~~~~-----~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~---~~gd~v 93 (359)
T 1svv_A 25 GMHPKILDLMARD---NMTQHA-----GYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL---RPWEAV 93 (359)
T ss_dssp CCCHHHHHHHHHH---TTCCCC-----STTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHC---CTTEEE
T ss_pred CCCHHHHHHHHHH---Hhhccc-----cccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHh---CCCCEE
Confidence 4555555455542 222322 12444566778899999999888889999999988887776542 378999
Q ss_pred EEcCCCChhHHHH--HHHhhcCCCeEEEEeCc-------hhhhc-cCCC-------EeEEEEEcCCCCeeecc---HHHH
Q 001989 259 IIASNCHPQTIDI--CITRADGFDIKVVVSDL-------KDIDY-KSGD-------VCGVLVQYPGTEGEVLD---YGDF 318 (985)
Q Consensus 259 lv~~~~H~s~~~~--~~~~a~~~gi~v~~v~~-------~~l~~-l~~~-------t~~V~v~~pn~~G~v~d---i~~I 318 (985)
++++..|+++... ++ ..|++++.++. ++|++ ++++ +++|++++||.+|.+.| +++|
T Consensus 94 l~~~~~~~~~~~~~~~~----~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~~ptG~~~~~~~l~~i 169 (359)
T 1svv_A 94 IATQLGHISTHETGAIE----ATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDI 169 (359)
T ss_dssp EEETTSHHHHSSTTHHH----HTTCCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHH
T ss_pred EEcccchHHHHHHHHHh----cCCCeeEEEeCCCCeecHHHHHHHHHHHHhccCCCceEEEEEcCCCCceecCHHHHHHH
Confidence 9999999988774 32 35778887764 44555 5443 89999999998999987 9999
Q ss_pred HHHHHhCCcEEEEEecCc---cccCCCCC-Cc----ccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeee
Q 001989 319 IKNAHANGVKVVMATDLL---ALTILKPP-GE----LGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGV 390 (985)
Q Consensus 319 ~~~a~~~galliV~a~~~---~lg~l~~~-~~----~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~ 390 (985)
.++|+++|+++++|. .. +++.+... .. .++|+++.++.+++.| .+.|++++++++++.+....
T Consensus 170 ~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~~-----~~~g~l~~~~~~~~~~~~~~--- 240 (359)
T 1svv_A 170 SASCKEHGLYLFLDG-ARLASALSSPVNDLTLADIARLTDMFYIGATKAGGM-----FGEALIILNDALKPNARHLI--- 240 (359)
T ss_dssp HHHHHHHTCEEEEEC-TTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCS-----SCEEEEECSGGGCTTHHHHH---
T ss_pred HHHHHHhCCEEEEEc-cchhhhhcCCCcchhhhhhhhcCCEEEEecccCCCC-----CceEEEEEcccHHHHHHHHH---
Confidence 999999999999953 33 33433222 22 5789999988555433 24689998887655441100
Q ss_pred eecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc
Q 001989 391 SIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ 470 (985)
Q Consensus 391 t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~ 470 (985)
...++.+-.+.....+ + ...+..++++++.++..++.+++.+.|+..| +++.
T Consensus 241 ----------------------~~~~~~~~~~~~~~~~----~-~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~ 292 (359)
T 1svv_A 241 ----------------------KQRGALMAKGWLLGIQ----F-EVLMKDNLFFELGAHSNKMAAILKAGLEACG-IRLA 292 (359)
T ss_dssp ----------------------HHTTCCCTTTHHHHHH----H-HHHTSTTHHHHHHHHHHHHHHHHHHHHHHTT-CCBS
T ss_pred ----------------------hcCCcccccchhhHHH----H-HHHHhhhhHHHHHHHHHHHHHHHHHHhccCC-eEEc
Confidence 0001000000011111 1 2345556788899999999999999995445 7776
Q ss_pred CCCCcceEEEecCCHHHHHHHHHHc-Cceeeee---cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 471 GLPFFDTVKVKCADAHAIASAAYKI-EMNLRVV---DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 471 ~~~~~~~~~~~~~~~~~v~~~L~~~-GI~~~~~---~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+....-+.+.. ..++.++|.++ ||.+... ..+.+|++++..+|++||++++++|++
T Consensus 293 ~~~~~~~~~~~~--~~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 353 (359)
T 1svv_A 293 WPSASNQLFPIL--ENTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKR 353 (359)
T ss_dssp SCCSSSEECBEE--EHHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred cCCccceEEEEc--CHHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHH
Confidence 332222222233 25788899988 9987322 236799999999999999999999975
No 244
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.73 E-value=4.1e-17 Score=188.73 Aligned_cols=211 Identities=14% Similarity=0.103 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEc
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVG 708 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~ 708 (985)
..+++++.+++++|.+.. +.+++|++|+..++.++ ..++|+||++...|+..... ++..|++++.++
T Consensus 83 ~~~~le~~lA~l~g~~~~-i~~ssGt~Ai~~al~~l--------~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~ 153 (415)
T 2fq6_A 83 THFSLQQAMCELEGGAGC-VLFPCGAAAVANSILAF--------IEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFD 153 (415)
T ss_dssp HHHHHHHHHHHHHTCSEE-EEESSHHHHHHHHHHTT--------CCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEEC
T ss_pred hHHHHHHHHHHHhCCCeE-EEeCCHHHHHHHHHHHH--------hCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEEC
Confidence 356789999999998754 55577877664443322 14689999988777654433 245799999998
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHH--cCCEEEEEccccccccCCCCCCccCCc
Q 001989 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHD--NGGQVYMDGANMNAQVGLTSPGYIGAD 785 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~--~galliVD~a~~~~~~~l~~pg~~g~D 785 (985)
.+ |+++|+++|+ ++|++|++++| |++|.+. |+++|+++||+ +|+++++|++|..+. ...|-.+|+|
T Consensus 154 ~~-----d~~~le~ai~---~~tklV~~e~~~NptG~v~-dl~~I~~la~~~~~g~~livD~a~a~~~--~~~p~~~g~D 222 (415)
T 2fq6_A 154 PL-----IGADIVKHLQ---PNTKIVFLESPGSITMEVH-DVPAIVAAVRSVVPDAIIMIDNTWAAGV--LFKALDFGID 222 (415)
T ss_dssp TT-----CGGGGGGGCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHCTTCEEEEECTTTTTT--SSCGGGGTCS
T ss_pred CC-----CHHHHHHhhc---cCCcEEEEECCCCCCCEee-cHHHHHHHHHhhcCCCEEEEECCCcccc--cCCccccCCe
Confidence 74 8999999997 78999999998 5799998 89999999999 999999999985332 2356678999
Q ss_pred EEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
++++|+||+|+.+ |+..+|++++++++.+.+.... . ..+...+ +. .+|..+. +.
T Consensus 223 iv~~S~sK~lg~~---g~~~~G~l~~~~~~~~~l~~~~-----------~--~~G~~~~-----~~---~a~~~~~--~l 276 (415)
T 2fq6_A 223 VSIQAATKYLVGH---SDAMIGTAVCNARCWEQLRENA-----------Y--LMGQMVD-----AD---TAYITSR--GL 276 (415)
T ss_dssp EEEEETTTTTTCS---SSCCCEEEEECTTTHHHHHHHH-----------H--HTTCCCC-----HH---HHHHHHH--HH
T ss_pred EEEEeCccccCCC---CCceEEEEEeCHHHHHHHHHHH-----------H--hcCCCCC-----HH---HHHHHHh--hh
Confidence 9999999998421 2223789998876554332100 0 0111111 11 1222222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 001989 866 KGLTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~g 889 (985)
+.+..+.++..+++.++++.|++.
T Consensus 277 ~~l~~r~~~~~~n~~~l~~~L~~~ 300 (415)
T 2fq6_A 277 RTLGVRLRQHHESSLKVAEWLAEH 300 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345556667778888899988764
No 245
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.73 E-value=8.1e-16 Score=174.07 Aligned_cols=266 Identities=12% Similarity=0.067 Sum_probs=188.2
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchh---
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKD--- 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~--- 290 (985)
.++++.+|+++|.++.++.+++|+|.+++.++.++ . ++||+|+++...|+.+...++. .|.+++.++.++
T Consensus 68 ~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l-~--~~gd~Vl~~~p~~~~~~~~~~~----~g~~~~~v~~~~~~~ 140 (360)
T 3hdo_A 68 QKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAF-A--AEGEEIGYVHPSYSYYGTLAEV----QGARVRTFGLTGDFR 140 (360)
T ss_dssp HHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH-C--CTTCEEEEESSSCTHHHHHHHH----HTCEEEEECBCTTSS
T ss_pred HHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHH-h--CCCCEEEEcCCChHHHHHHHHH----CCCEEEEeeCCCCCC
Confidence 36788999999988889999999998888777655 2 3889999999999998887754 488888887632
Q ss_pred hhcc-C-CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCC----CcccceEEEecC-cccccc
Q 001989 291 IDYK-S-GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPP----GELGADIVVGSA-QRFGVP 362 (985)
Q Consensus 291 l~~l-~-~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~----~~~GaDi~v~s~-k~lg~P 362 (985)
++++ . .++++|++.+| |.+|.+.|+++|.++|+++|+++++|. ..+...-..+ ...+.+++++|. |.|+.
T Consensus 141 ~~~l~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~- 218 (360)
T 3hdo_A 141 IAGFPERYEGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDE-TYAEFAESNALELVRRHENVVVTRTLSKSYSL- 218 (360)
T ss_dssp BTTCCSSBCSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEEC-TTGGGSSCCCTHHHHHCSSEEEEEESTTTTSC-
T ss_pred HHHHHhhcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEEC-ChHhhCCcchhHHhccCCCEEEEecchHhhcC-
Confidence 2221 1 23568888888 789999999999999999999999953 3221111111 235667888887 87753
Q ss_pred CCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcch
Q 001989 363 MGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEG 442 (985)
Q Consensus 363 ~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~G 442 (985)
+|..+|++.+++++.+.+... . ...+.| .....+..++ +. ..+.
T Consensus 219 ---~G~r~G~~~~~~~~~~~~~~~----------~----------------~~~~~~---~~~~~a~~~~--l~--~~~~ 262 (360)
T 3hdo_A 219 ---AGMRIGLAIARPEVIAALDKI----------R----------------DHYNLD---RLAQAACVAA--LR--DQAY 262 (360)
T ss_dssp ---TTSCCEEEECCHHHHHHHHHH----------S----------------CSCCSC---HHHHHHHHHH--HH--CHHH
T ss_pred ---CccceeeEeeCHHHHHHHHHh----------C----------------CCCCCC---HHHHHHHHHH--hc--CHHH
Confidence 344578999888877655100 0 000111 1112222222 22 2446
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC--HHHHHHHHHHcCceeeeec----CCeEEEEeccCCC
Q 001989 443 LKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVVD----SNTVTASFDETTT 516 (985)
Q Consensus 443 l~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~~----~~~lris~t~~~t 516 (985)
++++.++..++.+++.+.|+++| +++... ...-+.+..++ ..++.+.|.++||.++... ++.+|++++ |
T Consensus 263 ~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~---~ 337 (360)
T 3hdo_A 263 LSECCRRIRETREWFTTELRSIG-YDVIPS-QGNYLFATPPDRDGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG---T 337 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-CEECCC-SSSEEEEECTTCCHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC---C
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC-CEEcCC-CccEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC---C
Confidence 78899999999999999999986 887632 22234455554 8899999999999886532 478999987 9
Q ss_pred HHHHHHHHHHHhC
Q 001989 517 LEDVDKLFIVFAG 529 (985)
Q Consensus 517 ~edId~li~aL~~ 529 (985)
++|+|+|+++|+.
T Consensus 338 ~~e~~~l~~al~~ 350 (360)
T 3hdo_A 338 REEMEQTLAALKE 350 (360)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999974
No 246
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.73 E-value=4.4e-17 Score=187.92 Aligned_cols=274 Identities=12% Similarity=0.081 Sum_probs=187.8
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 207 QGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
.|..+...++++.+++++|.+. ..++.+||.+.++++.++ .++||+|+++...|+++...++. .|.+++.+
T Consensus 100 ~g~~~~~~~l~~~la~~~g~~~--~i~~~sGt~a~~~~l~~~---~~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~~ 170 (409)
T 3kki_A 100 LQNDYDKPMIEKRLAKFTGFDE--CLLSQSGWNANVGLLQTI---CQPNTNVYIDFFAHMSLWEGARY----ANAQAHPF 170 (409)
T ss_dssp GCSTTTSCHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHH---CCTTCEEEEETTSCHHHHHHHHH----TTCEEEEE
T ss_pred cCCcHHHHHHHHHHHHHhCCCe--EEEecchHHHHHHHHHHh---cCCCCEEEECCCcCHHHHHHHHH----cCCeEEEe
Confidence 3444445567889999999875 456677777776665554 24899999999999999988753 47777776
Q ss_pred C---chhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCC---------CcccceE
Q 001989 287 D---LKDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPP---------GELGADI 351 (985)
Q Consensus 287 ~---~~~l~~-l~~-~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~---------~~~GaDi 351 (985)
+ +++|++ +.+ ++++|++.+| |++|.+.|+++|.++|+++|+++++| +..+.+.+.+. ...++||
T Consensus 171 ~~~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~D-e~~~~g~~g~~g~~~~~~~~~~~~~di 249 (409)
T 3kki_A 171 MHNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVD-ESHSLGTHGPNGAGLLAELGLTREVHF 249 (409)
T ss_dssp CTTCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEE-CTTTTTTSSGGGCCHHHHHTCGGGCSE
T ss_pred cCCCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEE-CCccccccCCCCCcchhhcCCCCCCCE
Confidence 4 456766 543 4788888887 67999999999999999999999995 34454433211 1235799
Q ss_pred EEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHH
Q 001989 352 VVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANM 430 (985)
Q Consensus 352 ~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~ 430 (985)
+++|. |.|+++ .|++.+++++.+.+... ...+. . ++ . .++....+..
T Consensus 250 ~~~s~sK~~~~~-------gg~v~~~~~~~~~~~~~----------~~~~~------------~-~~-~-~~~~~~aa~~ 297 (409)
T 3kki_A 250 MTASLAKTFAYR-------AGAIWCNNEVNRCVPFI----------SYPAI------------F-SS-T-LLPYEAAGLE 297 (409)
T ss_dssp EEEESSSTTCSS-------CEEEEESSSGGGTHHHH----------CHHHH------------H-SB-C-CCHHHHHHHH
T ss_pred EEeecchhhCCC-------ceEEEECHHHHHHHHHh----------CcCcc------------c-cC-C-CcHHHHHHHH
Confidence 99997 877532 38888887766544100 00000 0 00 0 1112233333
Q ss_pred HHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeee-----
Q 001989 431 AAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVV----- 502 (985)
Q Consensus 431 aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~----- 502 (985)
+++ ..+.. .+++.++..++.+++.+.|+++| +++... ...+.+..+. ..++.++|.++||.+...
T Consensus 298 aal--~~~~~--~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~--~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~~~~ 370 (409)
T 3kki_A 298 TTL--EIIES--ADNRRQHLDRMARKLRIGLSQLG-LTIRSE--SQIIGLETGDERNTEKVRDYLESNGVFGSVFCRPAT 370 (409)
T ss_dssp HHH--HHHHH--CHHHHHHHHHHHHHHHHHHHTTT-CCCCCS--SSEEEEEEESHHHHHHHHHHHHHTTEECEEECTTSS
T ss_pred HHH--HHHhc--CHHHHHHHHHHHHHHHHHHHHcC-CccCCC--CCEEEEEeCCHHHHHHHHHHHHHCCceEeeeCCCCc
Confidence 333 22211 25778888999999999999997 776532 2234444443 677999999999987542
Q ss_pred --cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 --DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 --~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+.+|++++..+|++||++++++|.+
T Consensus 371 ~~~~~~iRi~~~~~~t~e~i~~~~~~l~~ 399 (409)
T 3kki_A 371 SKNKNIIRLSLNSDVNDEQIAKIIEVCSD 399 (409)
T ss_dssp CTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEccCCCCHHHHHHHHHHHHH
Confidence 136899999999999999999999974
No 247
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.73 E-value=5.5e-17 Score=186.91 Aligned_cols=258 Identities=14% Similarity=0.027 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHhCCCcccee--cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCcccHH----------HHHHC
Q 001989 634 FNNLGEWLCTITGFDSFSLQ--PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPA----------TAAMC 700 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~--~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~-~~Hg~~~~----------~a~~~ 700 (985)
.+++++.+++++|.+.+.++ ++||++|+..++.++. .++|+||+++ ..|+.... .++..
T Consensus 61 ~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all--------~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~ 132 (409)
T 3jzl_A 61 RDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGIL--------RPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDF 132 (409)
T ss_dssp HHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHC--------CTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGG
T ss_pred HHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhc--------CCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHc
Confidence 55788899999999876554 6788887755544331 4789999987 66665543 33567
Q ss_pred CcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEc----C-CCccccccCHHHHHHHHHH--cCCEEEEEccccccc
Q 001989 701 GMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTY----P-STHGVYEEGIDEICKIIHD--NGGQVYMDGANMNAQ 773 (985)
Q Consensus 701 G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~----p-n~~G~i~~di~eI~~la~~--~galliVD~a~~~~~ 773 (985)
|++++.++.+++|.+|+++|+++++ ++|++|++++ | |.+|.+. |+++|+++||+ +|++++||+++....
T Consensus 133 G~~~~~v~~~~~g~~d~e~l~~ai~---~~tklV~i~~s~g~p~nptg~v~-~l~~I~~la~~~~~~~~livD~a~~~~~ 208 (409)
T 3jzl_A 133 HIGYSSVPLLENGDVDFPRIAKKMT---PKTKMIGIQRSRGYADRPSFTIE-KIKEMIVFVKNINPEVIVFVDNCYGEFV 208 (409)
T ss_dssp TCEEEECCCCTTSCCCHHHHHHHCC---TTEEEEEEECSCTTSSSCCCCHH-HHHHHHHHHHHHCTTCEEEEECTTCTTT
T ss_pred CCEEEEeCCCCCCCcCHHHHHHhcc---CCCeEEEEECCCCCCCCCcCccc-cHHHHHHHHHhhCCCCEEEEeCCccccc
Confidence 9999999998889999999999997 7899999998 8 4799998 89999999999 999999999975322
Q ss_pred cCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 774 VGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 774 ~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
. ...|..+|+|++++|+||+|+.+ |.|.+|++++++++.+.+...... ...+...+...+.
T Consensus 209 ~-~~~p~~~g~Div~~S~sK~lgg~---~~~~GG~v~~~~~li~~l~~~~~~-----------~~~g~~~g~~~~~---- 269 (409)
T 3jzl_A 209 E-YQEPPEVGADIIAGSLIKNPGGG---LAKTGGYIAGKEALVDLCGYRLTT-----------PGIGREAGASLYS---- 269 (409)
T ss_dssp S-SCCSGGGTCSEEEEETTSGGGTT---TCSSCEEEEECHHHHHHHHHHHSC-----------TTTGGGCCCCTTC----
T ss_pred c-cCCccccCCeEEEECccccCCcc---CCceEEEEEeCHHHHHHHHHHhcc-----------ccccccccccHHH----
Confidence 1 23567789999999999998521 225679999998766544211000 0000000000101
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeE--EEEEecCccccCCCCHHHHHHHHHHC
Q 001989 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHE--FIVDLRGLKNTAGIEPEDVAKRLMDY 930 (985)
Q Consensus 854 ~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~--~iv~~~~~~~~~g~~~~~v~~~L~~~ 930 (985)
+++.+..+ +.+..+.++..+++.++++.|++ ++++ ++++ ....+. +.+.+.. ......+++.|.+.
T Consensus 270 --~~~~l~gl--~~~~~r~~~~~~~a~~la~~L~~~g~~v-~p~~-~~~~~~~i~~i~l~~-----~~~~~~~~~~L~~~ 338 (409)
T 3jzl_A 270 --LLEMYQGF--FLAPHVTAQAIKGARFTAAMLAEFGVEA-DPVW-DAPRTDLIQSVSFHN-----KEKMVAFAQAIQAA 338 (409)
T ss_dssp --HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTCEE-ESCT-TSCCSSSCCEEECSC-----HHHHHHHHHHHHHT
T ss_pred --HHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHhCCCcc-cCCC-CCCCccEEEEEEeCC-----HHHHHHHHHHHHhc
Confidence 11222222 23455667788999999999987 6665 4432 111111 2233321 12356788889887
Q ss_pred CCc
Q 001989 931 GFH 933 (985)
Q Consensus 931 Gi~ 933 (985)
...
T Consensus 339 ~~~ 341 (409)
T 3jzl_A 339 SPV 341 (409)
T ss_dssp SSS
T ss_pred Ccc
Confidence 543
No 248
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.73 E-value=6.1e-16 Score=176.40 Aligned_cols=271 Identities=12% Similarity=0.097 Sum_probs=187.3
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-----
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----- 288 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----- 288 (985)
.++++.+|+++|.++.++.+++|+|.+++.++.++ . ++||+|+++...|+++...++. .|++++.++.
T Consensus 64 ~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~-~--~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~v~~~~~~~ 136 (381)
T 1v2d_A 64 PALREALAEEFAVEPESVVVTSGATEALYVLLQSL-V--GPGDEVVVLEPFFDVYLPDAFL----AGAKARLVRLDLTPE 136 (381)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH-C--CTTCEEEEEESCCTTHHHHHHH----TTCEEEEEECEEETT
T ss_pred HHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHh-C--CCCCEEEEcCCCchhHHHHHHH----cCCEEEEEeCCCCCc
Confidence 46788999999998888999999998888777654 2 3789999999999998877643 5777766643
Q ss_pred ------hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCCC----CCC--cccceE
Q 001989 289 ------KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILK----PPG--ELGADI 351 (985)
Q Consensus 289 ------~~l~~-l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l~----~~~--~~GaDi 351 (985)
++|++ +++++++|++++| |.+|.+.+ +++|+++|+++|+++++|. ..+..... +.. ..+.|+
T Consensus 137 ~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~g~~~~~~~~~~~~~~~ 215 (381)
T 1v2d_A 137 GFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDE-VYDELYYGERPRRLREFAPERTF 215 (381)
T ss_dssp EEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC-TTTTCBSSSCCCCHHHHCTTTEE
T ss_pred cCCcCHHHHHHhcCcCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEc-CccccccCCCCCCHHHhcCCCEE
Confidence 34666 7788999999988 67998864 8999999999999999953 33322111 111 358999
Q ss_pred EEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHH
Q 001989 352 VVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANM 430 (985)
Q Consensus 352 ~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~ 430 (985)
+++|. |.|+.| |..+|++++++++++.+... + + ....+.| .....+..
T Consensus 216 ~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~~~~--------------------~-~---~~~~~~~---~~~~~a~~ 264 (381)
T 1v2d_A 216 TVGSAGKRLEAT----GYRVGWIVGPKEFMPRLAGM--------------------R-Q---WTSFSAP---TPLQAGVA 264 (381)
T ss_dssp EEEEHHHHTTCG----GGCCEEEECCTTTHHHHHHH--------------------H-H---HHTSSCC---HHHHHHHH
T ss_pred EEeechhhcCCc----ccceEEEEeCHHHHHHHHHH--------------------H-h---hcccCCC---cHHHHHHH
Confidence 99998 776532 22379999887766554100 0 0 0011111 11222222
Q ss_pred HHHHHHHh-CcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCCHHHHHHHHHHcCceeeee-------
Q 001989 431 AAMYAVYH-GPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNLRVV------- 502 (985)
Q Consensus 431 aa~~l~~~-g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~GI~~~~~------- 502 (985)
+++ ... ..++++++.++..++.+++.+.|++.| +++..+....-+.+..++. ++.+.|.++||.+...
T Consensus 265 ~~l--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~-~~~~~l~~~gi~v~~g~~~~~~~ 340 (381)
T 1v2d_A 265 EAL--KLARREGFYEALREGYRRRRDLLAGGLRAMG-LRVYVPEGTYFLMAELPGW-DAFRLVEEARVALIPASAFYLED 340 (381)
T ss_dssp HHH--HHHHHTTHHHHHHHHHHHHHHHHHHHHHHTT-CCEECCSBSSEEEEECTTC-CHHHHHHHTCEECEEGGGGCSSS
T ss_pred HHH--hCcccHHHHHHHHHHHHHHHHHHHHHHHHCC-CEecCCCcceEEEEecChH-hHHHHHHhCCEEEecchHhCCCC
Confidence 222 221 156788999999999999999999987 8776432111234455432 2677778899987542
Q ss_pred -cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 -DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+.+|++++. +++||+++++.|..
T Consensus 341 ~~~~~iRi~~~~--~~~~i~~~~~~l~~ 366 (381)
T 1v2d_A 341 PPKDLFRFAFCK--TEEELHLALERLGR 366 (381)
T ss_dssp CCTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCC--CHHHHHHHHHHHHH
Confidence 24689999986 99999999999874
No 249
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.73 E-value=1.3e-16 Score=186.71 Aligned_cols=299 Identities=11% Similarity=0.116 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHHhC-CCc-cceecCcHHHHHHHHHHHHHHHHHhc----C--CCCCCEEEEcC-CCCcccHHHHHH----
Q 001989 633 MFNNLGEWLCTITG-FDS-FSLQPNAGAAGEYAGLMVIRAYHKAR----G--DHHRNVCIIPV-SAHGTNPATAAM---- 699 (985)
Q Consensus 633 ~~~e~~~~la~l~G-~~~-~~~~~~sGa~a~~a~l~air~~~~~~----g--~~~~~~IIv~~-~~Hg~~~~~a~~---- 699 (985)
...++++.++++++ .+. ..++.+||++|+++++++++.|...+ | ..++++||+.+ .+||........
T Consensus 102 ~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~ 181 (449)
T 2cjg_A 102 AMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTK 181 (449)
T ss_dssp HHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCc
Confidence 34578888999986 222 34677899999988888777654211 1 11267888865 578755432221
Q ss_pred ----CCc-----EEEEEcCCCC--C--------CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC----HHHHHHH
Q 001989 700 ----CGM-----KIVSVGTDAK--G--------NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG----IDEICKI 755 (985)
Q Consensus 700 ----~G~-----~vv~v~~d~~--g--------~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~l 755 (985)
.++ +++.+|.++. . ..|+++|+++|+++.+++++|+++.. |.+|++. + +++|.++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~-~~~~~l~~l~~l 260 (449)
T 2cjg_A 182 PTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRH-FRPEFFAAMREL 260 (449)
T ss_dssp HHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEE-CCHHHHHHHHHH
T ss_pred hhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCcc-CCHHHHHHHHHH
Confidence 222 5666776431 1 24667799999754468888877654 4689655 5 9999999
Q ss_pred HHHcCCEEEEEccccccccCCCCCC-----ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC
Q 001989 756 IHDNGGQVYMDGANMNAQVGLTSPG-----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI 830 (985)
Q Consensus 756 a~~~galliVD~a~~~~~~~l~~pg-----~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~ 830 (985)
|+++|+++|+|++|. +++-..... ...+|++++| |+| | +|++++++++.+.+.....+..
T Consensus 261 ~~~~g~lli~DEv~~-g~g~~g~~~~~~~~~~~~di~t~s--K~l--~-------iG~~~~~~~~~~~l~~~~~~~~--- 325 (449)
T 2cjg_A 261 CDEFDALLIFDEVQT-GCGLTGTAWAYQQLDVAPDIVAFG--KKT--Q-------VCGVMAGRRVDEVADNVFAVPS--- 325 (449)
T ss_dssp HHHTTCEEEEECTTT-TTTTTSSSSTHHHHTCCCSEEEEC--GGG--S-------SEEEEECGGGGGSTTCTTTSTT---
T ss_pred HHHCCcEEEEecccc-CCCccCcceeecccCCCceEEEec--Ccc--c-------EEEEEECHHHhhhhhhcccCCc---
Confidence 999999999999985 222111110 1246888664 887 3 5778888887765432111100
Q ss_pred CCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc---cCC--ee-ecCCCCceeeE
Q 001989 831 PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---HYP--IL-FRGVNGTVAHE 904 (985)
Q Consensus 831 ~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~---g~~--l~-~~~~~~~~~~~ 904 (985)
. ..+ ++.+++..++++.+.+..+..++ ..++..++++++.++|++ .+. +. ..+ .+.+
T Consensus 326 ----~--~~~----t~~~n~~~~~aa~aal~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~-~g~~--- 388 (449)
T 2cjg_A 326 ----R--LNS----TWGGNLTDMVRARRILEVIEAEG---LFERAVQHGKYLRARLDELAADFPAVVLDPRG-RGLM--- 388 (449)
T ss_dssp ----S--SCC----SSSSCHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEE-ETTE---
T ss_pred ----c--ccc----CCCCCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHhhCCCceeeEee-ccEE---
Confidence 0 001 11223444555556666554443 345667788889988875 233 21 111 1222
Q ss_pred EEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 905 FIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 905 ~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+.++++. .....++.++|.++|+.+.... .+.+|++|+..+|++|||+ +++.|+++++++
T Consensus 389 ~~~~~~~-----~~~~~~~~~~l~~~Gv~v~~~g---~~~iRi~~~~~~t~e~i~~--~l~~l~~~l~~~ 448 (449)
T 2cjg_A 389 CAFSLPT-----TADRDELIRQLWQRAVIVLPAG---ADTVRFRPPLTVSTAEIDA--AIAAVRSALPVV 448 (449)
T ss_dssp EEEECSS-----HHHHHHHHHHHHHTTEECEEET---TTEEEECCCTTCCHHHHHH--HHHHHHHHHHHH
T ss_pred EEEEECC-----hHHHHHHHHHHHHCCeEEecCC---CCEEEEECCCCCCHHHHHH--HHHHHHHHHHHh
Confidence 2345531 1135689999999999875432 3799999999999999999 888898887653
No 250
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.73 E-value=2.5e-17 Score=192.08 Aligned_cols=307 Identities=14% Similarity=0.124 Sum_probs=183.4
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCC--------------EEEEc-CCC
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRN--------------VCIIP-VSA 689 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~--------------~IIv~-~~~ 689 (985)
+|..++.+++.+++.+.+|. +... +++++|++|+..++.++. .+++ +||++ .+.
T Consensus 83 ~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~--------~~gd~~~~~~~~~~g~~~~vi~~~~p~ 154 (444)
T 3if2_A 83 QGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFG--------GAFVNEHSQDKESKSVDKSILLPLTPE 154 (444)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSS--------EEEECC-------CEEEEEEEESSSSC
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHh--------CCCccccccccccccccceEEEeCCCC
Confidence 45555555555666555554 3334 455666666644433321 2334 68775 555
Q ss_pred CcccHHH------HHHCCcEEEEEcCCC-CC----CCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHH
Q 001989 690 HGTNPAT------AAMCGMKIVSVGTDA-KG----NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICK 754 (985)
Q Consensus 690 Hg~~~~~------a~~~G~~vv~v~~d~-~g----~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~ 754 (985)
|..+... ....|.+++.+++++ +| .+|+++|++++.+..+++++|++++| |++|.+. + +++|++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~-~~~~l~~i~~ 233 (444)
T 3if2_A 155 YIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVL-TDEEMAHLAE 233 (444)
T ss_dssp CGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCC-CHHHHHHHHH
T ss_pred ccchhhcccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcC-CHHHHHHHHH
Confidence 5444432 234678888888865 33 79999999984321278999999998 4699987 6 899999
Q ss_pred HHHHcCCEEEEEccccccccCC----CCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC
Q 001989 755 IIHDNGGQVYMDGANMNAQVGL----TSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI 830 (985)
Q Consensus 755 la~~~galliVD~a~~~~~~~l----~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~ 830 (985)
+|+++|+++|+|++|.....+. ..+...+.++++.|+||+ +. +|.++|++++++++.+.+......
T Consensus 234 ~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~----~G~r~G~~~~~~~l~~~~~~~~~~----- 303 (444)
T 3if2_A 234 IAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-GL----PGMRTGIIVADAKVIEAVSAMNAV----- 303 (444)
T ss_dssp HHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-TC----GGGCCEEEECCHHHHHHHHHHHHH-----
T ss_pred HHHHCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhc-cC----CCCceEEEEECHHHHHHHHHHHHh-----
Confidence 9999999999999985321111 112334678999999996 33 356789999887766544211000
Q ss_pred CCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH-HHHH-HHHHHHHHHHHHHHHhhcc---CCeeecCCCCceeeEE
Q 001989 831 PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK-GLTE-ASKIAILNANYMAKRLEKH---YPILFRGVNGTVAHEF 905 (985)
Q Consensus 831 ~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e-Gl~~-~~~~~~~~a~~l~~~L~~g---~~l~~~~~~~~~~~~~ 905 (985)
. ..+++..++ .++.+++...... .+++ ..+...++.+++.+.|.+. +.+....+.+..+ +
T Consensus 304 -------~--~~~~~~~~~----~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~--~ 368 (444)
T 3if2_A 304 -------V--NLAPTRFGA----AIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIF--L 368 (444)
T ss_dssp -------H--HSSCCCHHH----HHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSE--E
T ss_pred -------c--cCCCChHHH----HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEE--E
Confidence 0 001111112 1222233221111 1111 2334455666676666542 2232222222222 3
Q ss_pred EEEecCccccCCCCHHHHHHHHHHCCCccCCCC-C-C---------CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 906 IVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-W-P---------VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 906 iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~-~-p---------~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.+.++. .+.+..++.+.|.++||.+.... + + ..+++||+++. +++||++ +++.|++++.++
T Consensus 369 ~~~~~~----~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~--~l~~l~~~~~~~ 440 (444)
T 3if2_A 369 WLWFKD----LPISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLID--GIKVIGEVVREL 440 (444)
T ss_dssp EEEETT----CSSCHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHHH--HHHHHHHHHHHH
T ss_pred EEEcCC----CCCCHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--CHHHHHH--HHHHHHHHHHHH
Confidence 455541 14678899999999999875321 1 1 12689999987 9999999 888999988876
Q ss_pred cc
Q 001989 975 KM 976 (985)
Q Consensus 975 ~~ 976 (985)
..
T Consensus 441 ~~ 442 (444)
T 3if2_A 441 YD 442 (444)
T ss_dssp HT
T ss_pred Hc
Confidence 54
No 251
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.73 E-value=2.8e-16 Score=178.37 Aligned_cols=280 Identities=11% Similarity=0.021 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh--hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN--IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~--~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~- 288 (985)
...++++.+|+++|.+ ++.+++|||.+++.++.+++ .. +||+|+++...|+++...++. .|++++.++.
T Consensus 33 ~~~~l~~~la~~~~~~--~v~~~~ggt~al~~~~~~~~~~~~--~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~~~~~ 104 (375)
T 2fnu_A 33 RSLLFEEALCEFLGVK--HALVFNSATSALLTLYRNFSEFSA--DRNEIITTPISFVATANMLLE----SGYTPVFAGIK 104 (375)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHSSCCCT--TSCEEEECSSSCTHHHHHHHH----TTCEEEECCBC
T ss_pred HHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHhcccCC--CCCEEEECCCccHhHHHHHHH----CCCEEEEeccC
Confidence 3567889999999987 68899999988888777653 33 789999999999999998764 5888888764
Q ss_pred -------hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCC---CCcccceEEEec--
Q 001989 289 -------KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP---PGELGADIVVGS-- 355 (985)
Q Consensus 289 -------~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~---~~~~GaDi~v~s-- 355 (985)
++|++ +++++++|++.+| +|.+.|+++|.++|+++|+++++| +.++.+.... .+.++ |+++.+
T Consensus 105 ~~~~~d~~~l~~~i~~~~~~v~~~~~--tG~~~~l~~i~~l~~~~~~~li~D-~a~~~~~~~~~~~~~~~~-~i~~~s~s 180 (375)
T 2fnu_A 105 NDGNIDELALEKLINERTKAIVSVDY--AGKSVEVESVQKLCKKHSLSFLSD-SSHALGSEYQNKKVGGFA-LASVFSFH 180 (375)
T ss_dssp TTSSBCGGGSGGGCCTTEEEEEEECG--GGCCCCHHHHHHHHHHHTCEEEEE-CTTCTTCEETTEETTSSS-SEEEEECC
T ss_pred CCCCCCHHHHHhhcCcCceEEEEeCC--cCCccCHHHHHHHHHHcCCEEEEE-CccccCCeECCeeccccC-CeEEEeCC
Confidence 35656 7788999888887 899999999999999999999995 3445543211 23444 555544
Q ss_pred C-ccccccCCCCCCcEEEEEEc--hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCcc-chhHHHHHHH
Q 001989 356 A-QRFGVPMGYGGPHAAFLATS--QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNIC-TAQALLANMA 431 (985)
Q Consensus 356 ~-k~lg~P~~~GGP~~G~l~~~--~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~-t~~~l~a~~a 431 (985)
+ |.+ +| |.|+++++ +++.+++.....+...+. . + + +.+.++.+.. ....+ .+
T Consensus 181 ~~K~~-~~------g~g~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~-----------~~~~~~~~~~~~~~~~---~~ 236 (375)
T 2fnu_A 181 AIKPI-TT------AEGGAVVTNDSELHEKMKLFRSHGMLKK-D-F-F-----------EGEVKSIGHNFRLNEI---QS 236 (375)
T ss_dssp TTSSS-CC------SSCEEEEESCHHHHHHHHHHTBTTEEES-S-S-S-----------CEEESSCCCBCCCCHH---HH
T ss_pred CCCCc-cc------cCceEEEeCCHHHHHHHHHHHhcCCccc-c-c-c-----------ccccccccccCCCCHH---HH
Confidence 4 544 22 34556663 556554421111100000 0 0 1 1111111110 11222 22
Q ss_pred HHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-----CCcceEEEecC-----CHHHHHHHHHHcCceeee
Q 001989 432 AMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-----PFFDTVKVKCA-----DAHAIASAAYKIEMNLRV 501 (985)
Q Consensus 432 a~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-----~~~~~~~~~~~-----~~~~v~~~L~~~GI~~~~ 501 (985)
++ .+...++++++.++..++++++.+.|+++.++++... ..+..+.+.++ ...++.+.|.++||.++.
T Consensus 237 a~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~ 314 (375)
T 2fnu_A 237 AL--GLSQLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQV 314 (375)
T ss_dssp HH--HHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBC
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCccccchHHHHHHHHHHCCCCccc
Confidence 22 1222467889999999999999999999833888632 11122333333 467899999999998762
Q ss_pred ec-------------------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 VD-------------------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ~~-------------------------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.. .+.+|++++..+|++|+++++++|.+
T Consensus 315 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~ 367 (375)
T 2fnu_A 315 HYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLK 367 (375)
T ss_dssp CCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred cccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHH
Confidence 10 15799999999999999999999974
No 252
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.73 E-value=1.2e-16 Score=185.57 Aligned_cols=302 Identities=11% Similarity=0.076 Sum_probs=187.1
Q ss_pred HHHHHHHHHHhCCCccceecCcH-HHHHHHHHHHHHHHHHh-cCC------CCCCEEEEcCCCCcccHHHHHHCCcEEEE
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAG-AAGEYAGLMVIRAYHKA-RGD------HHRNVCIIPVSAHGTNPATAAMCGMKIVS 706 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sG-a~a~~a~l~air~~~~~-~g~------~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~ 706 (985)
.++++.++++++.+...+..++| +++.. ...+++.+... .|. .++++|+++++.|..+...++..|++++.
T Consensus 81 ~~lr~~ia~~~~~~~~~i~~t~G~~~al~-~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~ 159 (427)
T 3ppl_A 81 VDIRQIWADLLGVPVEQVLAGDASSLNIM-FDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMIS 159 (427)
T ss_dssp HHHHHHHHHHHTSCGGGEEECSSCHHHHH-HHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhCCCcceEEEeCCcHHHHH-HHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEE
Confidence 46778889988988766555444 44441 01223332210 100 02789999988777777778889999999
Q ss_pred EcCCCCCCCCHHHHHHHHHhcCCCEEEEEEE-cC-CCccccccCHH---HHHHHH-HHcCCEEEEEcccccc-ccCCCC-
Q 001989 707 VGTDAKGNINIEELRKAAEANRDNLSTLMVT-YP-STHGVYEEGID---EICKII-HDNGGQVYMDGANMNA-QVGLTS- 778 (985)
Q Consensus 707 v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~-~p-n~~G~i~~di~---eI~~la-~~~galliVD~a~~~~-~~~l~~- 778 (985)
+|++++| +|+++|+++++ .+++++|+++ +| |++|.+. +.+ +|+++| +++|+++|+|+++... ..+-..
T Consensus 160 v~~~~~g-~d~~~l~~~l~--~~~~~~v~~~p~~~NPtG~~~-~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~ 235 (427)
T 3ppl_A 160 VPMNEDG-PDMDAVEELVK--NPQVKGMWVVPVFSNPTGFTV-TEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPE 235 (427)
T ss_dssp EEEETTE-ECHHHHHHHTT--STTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCC
T ss_pred eCCCCCC-CCHHHHHHHHh--cCCCeEEEECCCCCCCCCccC-CHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCC
Confidence 9998776 99999999994 2688888866 55 5799987 555 888888 9999999999988421 111110
Q ss_pred ----------CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchh
Q 001989 779 ----------PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 779 ----------pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g 848 (985)
++..+.++++.|++|+ .. +|.++|++++++++.+.+...... ...+++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~i~~~S~SK~-~~----~G~r~G~~~~~~~l~~~~~~~~~~--------------~~~~~~~~~ 296 (427)
T 3ppl_A 236 VIDIVGLGEAAGNPNRFWAFTSTSKI-TL----AGAGVSFFLTSAENRKWYTGHAGI--------------RGIGPNKVN 296 (427)
T ss_dssp CCCHHHHHHHTTCTTSEEEEEESTTT-SC----TTSSCEEEECCHHHHHHHHHHHHH--------------HCSCCCHHH
T ss_pred ccchhhhhhccCCCCcEEEEechhhc-cC----cCccEEEEEcCHHHHHHHHHHhhc--------------ccCCCCHHH
Confidence 0133567889999998 33 367899999887766544211000 011111111
Q ss_pred hhHHHHHHHHHHHHhc--HHHHHHHHHHHHHHHHHHHHHhhcc---C-CeeecCCCCceeeEEEEEecCccccCCCCHHH
Q 001989 849 SALILPISYTYIAMMG--SKGLTEASKIAILNANYMAKRLEKH---Y-PILFRGVNGTVAHEFIVDLRGLKNTAGIEPED 922 (985)
Q Consensus 849 ~~~~~~~a~a~l~~lg--~eGl~~~~~~~~~~a~~l~~~L~~g---~-~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~ 922 (985)
+ .++..++...+ .+.+++..+...++.+++.+.|.+. . .+.+..+.+..+ +.++++ +.+..+
T Consensus 297 q----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~--~~~~~~------~~~~~~ 364 (427)
T 3ppl_A 297 Q----LAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYF--ISLDVV------PGTASR 364 (427)
T ss_dssp H----HHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSC--EEEECS------TTCHHH
T ss_pred H----HHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEE--EEEECC------cchHHH
Confidence 2 11222222111 1223344444555666666666541 1 122222223222 346664 226788
Q ss_pred HHHHHHHCCCccCC--CCCC-----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 923 VAKRLMDYGFHGPT--MSWP-----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 923 v~~~L~~~Gi~~~~--~~~p-----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+.+.|.++||.+.. ..++ ..+++||++... +++||++ +++.|++++.++.
T Consensus 365 ~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~~--~~~~l~~~l~~~~ 421 (427)
T 3ppl_A 365 VAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP-PVEELEV--AMDGVATCVLLAA 421 (427)
T ss_dssp HHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS-CHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC-CHHHHHH--HHHHHHHHHHHHH
Confidence 99999999998754 1122 358999999665 9999999 7788888887653
No 253
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.73 E-value=4.2e-16 Score=178.86 Aligned_cols=275 Identities=12% Similarity=0.134 Sum_probs=192.7
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 207 QGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
+|..+...++++.+++++|.+ ++.+++|||.+++.++.++ .++||+|+++...|+++...++. .|.+++.+
T Consensus 84 ~g~~~~~~~l~~~la~~~g~~--~v~~~~ggt~a~~~~~~~~---~~~gd~V~~~~p~~~~~~~~~~~----~g~~~~~v 154 (398)
T 3a2b_A 84 NGTLDIHVELEEKLSAYVGKE--AAILFSTGFQSNLGPLSCL---MGRNDYILLDERDHASIIDGSRL----SFSKVIKY 154 (398)
T ss_dssp TCCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHS---SCTTCEEEEETTCCHHHHHHHHH----SSSEEEEE
T ss_pred cCCcHHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHH---hCCCCEEEECCccCHHHHHHHHH----cCCceEEe
Confidence 454566677889999999975 6889999998777766554 23889999999999999888753 57888887
Q ss_pred Cc---hhhhc-cCC----CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC----CC-Ccc----c
Q 001989 287 DL---KDIDY-KSG----DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK----PP-GEL----G 348 (985)
Q Consensus 287 ~~---~~l~~-l~~----~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~----~~-~~~----G 348 (985)
+. ++|++ +++ ++++|++.+| |.+|.+.|+++|.++|+++|+++++| +..+.+... +. ..+ +
T Consensus 155 ~~~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~D-e~~~~~~~~~~~~~~~~~~~~~~~ 233 (398)
T 3a2b_A 155 GHNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVD-DAHSLGVIGHKGAGTASHFGLNDD 233 (398)
T ss_dssp CTTCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEE-CTTTTTTSSGGGCCHHHHHTCGGG
T ss_pred CCCCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEE-CCCcccccCCCCCchHhhcCCCcC
Confidence 64 56665 543 7899998887 67999999999999999999999995 344444321 11 112 3
Q ss_pred ceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHH
Q 001989 349 ADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALL 427 (985)
Q Consensus 349 aDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~ 427 (985)
+|++++|. |.|+ | || |++++++++++.+.... . ++ ...++++. ....
T Consensus 234 ~di~~~s~sK~~~-~-----~G-G~~~~~~~~~~~l~~~~----------~----------~~--~~~~~~~~---~~~a 281 (398)
T 3a2b_A 234 VDLIMGTFSKSLA-S-----LG-GFVAGDADVIDFLKHNA----------R----------SV--MFSASMTP---ASVA 281 (398)
T ss_dssp CSEEEEESSSTTC-S-----SC-EEEEECHHHHHHHHHHC----------H----------HH--HSSBCCCH---HHHH
T ss_pred CeEEEeccccccc-C-----CC-cEEEeCHHHHHHHHHhc----------c----------cc--eecCCCCH---HHHH
Confidence 79999998 7665 2 23 89999988776541100 0 00 00011111 1111
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeeec-
Q 001989 428 ANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVVD- 503 (985)
Q Consensus 428 a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~~- 503 (985)
+..+++ ..+ +.++++.++..++.+++.+.|+++| +++..+ ...-+.+..+. ..++.+.|.++||.+....
T Consensus 282 ~~~~~l--~~~--~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~-~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~ 355 (398)
T 3a2b_A 282 STLKAL--EII--QNEPEHIEKLWKNTDYAKAQLLDHG-FDLGAT-ESPILPIFIRSNEKTFWVTKMLQDDGVFVNPVVS 355 (398)
T ss_dssp HHHHHH--HHH--HHCTHHHHHHHHHHHHHHHHHHHTT-CCBCSC-CSSEEEEECCCHHHHHHHHHHHHHTTEECEEECT
T ss_pred HHHHHH--HHH--hhCHHHHHHHHHHHHHHHHHHHhcC-CCcCCC-CCCEEEEEcCCHHHHHHHHHHHHHCCcEEEeeCC
Confidence 122222 222 2245778888899999999999986 776532 22345566664 6789999999999876531
Q ss_pred ------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 504 ------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 ------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.+|++++.++|++|+++++++|.+
T Consensus 356 ~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~ 387 (398)
T 3a2b_A 356 PAVPAEESLIRFSLMATHTYDQIDEAIEKMVK 387 (398)
T ss_dssp TTSCGGGCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCceEEEEEeCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999974
No 254
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.73 E-value=8.9e-17 Score=186.96 Aligned_cols=290 Identities=16% Similarity=0.167 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc----------
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM---------- 702 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~---------- 702 (985)
..++++.++++++-....++.+||+++++.++++++.+ .++++||+ ...+|+.........|.
T Consensus 97 ~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~------~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~ 170 (434)
T 3l44_A 97 EVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAY------TGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDS 170 (434)
T ss_dssp HHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCSSGGGGBC-------CCCBSS
T ss_pred HHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHh------hCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCc
Confidence 45778889998862233567789999998888777654 24567777 45677755433222221
Q ss_pred ---------EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccC----HHHHHHHHHHcCCEEEEEcc
Q 001989 703 ---------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG----IDEICKIIHDNGGQVYMDGA 768 (985)
Q Consensus 703 ---------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d----i~eI~~la~~~galliVD~a 768 (985)
++..+|.+ |+++|+++++++.+++++|+++.++ +.|.+. + +++|.++|+++|++||+|++
T Consensus 171 ~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~-~~~~~l~~l~~l~~~~~illI~DEv 244 (434)
T 3l44_A 171 AGVPQSIAQEVITVPFN-----NVETLKEALDKWGHEVAAILVEPIVGNFGIVE-PKPGFLEKVNELVHEAGALVIYDEV 244 (434)
T ss_dssp TTCCHHHHTTEEEECTT-----CHHHHHHHHHHHGGGEEEEEECSSBCTTSCBC-CCTTHHHHHHHHHHTTTCEEEEECT
T ss_pred CCCCCcCCCceEecCcc-----cHHHHHHHHHhCCCCEEEEEEcCCCCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEecc
Confidence 33444442 8999999997554577777776554 567775 5 99999999999999999998
Q ss_pred ccccccCCCCCCc--------cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCC
Q 001989 769 NMNAQVGLTSPGY--------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG 840 (985)
Q Consensus 769 ~~~~~~~l~~pg~--------~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~ 840 (985)
|. ++ +.+. ..+|++++ .|+|+ +|.++|++++++++.+.+.... . .
T Consensus 245 ~~----g~-~~g~~~~~~~~~~~~di~t~--sK~~~-----~G~~iG~~~~~~~i~~~~~~~~-----------~--~-- 297 (434)
T 3l44_A 245 IT----AF-RFMYGGAQDLLGVTPDLTAL--GKVIG-----GGLPIGAYGGKKEIMEQVAPLG-----------P--A-- 297 (434)
T ss_dssp TT----TT-TSSSSCHHHHHTCCCSEEEE--EGGGG-----TTSSCEEEEECHHHHTTBTTTS-----------S--B--
T ss_pred cc----ce-eccccHHHHHcCCCCCeeeh--hhhhc-----CCcCeeeEEEcHHHHHhhccCC-----------C--c--
Confidence 73 22 2222 23687765 48874 4678999998888766553210 0 0
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCc--c
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGL--K 913 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~--~ 913 (985)
...+++.+++.+++++.+.+..+..+. ..++..++.++++++|++. +.+. ..+ .+. + +.+.+... .
T Consensus 298 ~~~~t~~~~~~a~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~-~--~~~~~~~~~~~ 370 (434)
T 3l44_A 298 YQAGTMAGNPASMASGIACLEVLQQEG---LYEKLDELGATLEKGILEQAAKHNIDITLNR-LKG-A--LTVYFTTNTIE 370 (434)
T ss_dssp CCCCTTTTCHHHHHHHHHHHHHHTSTT---HHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE-ETT-E--EEEEESSSCCC
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHHHHHHHHhCCCCEEEEe-ecc-E--EEEEEecCccc
Confidence 000112224455555666666654433 3445667777888777652 2221 111 111 1 23333210 0
Q ss_pred c------cCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 914 N------TAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 914 ~------~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
+ ..+....++.+.|.++|+.+.... .+.+|++ ..+|++|||+ +++.|++++++++.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---~~~~rl~--~~~t~e~i~~--~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 371 DYDAAQDTDGEMFGKFFKLMLQEGVNLAPSK---YEAWFLT--TEHTKEDIEY--TIEAVGRAFAALAD 432 (434)
T ss_dssp SHHHHHHSCHHHHHHHHHHHHHTTEECCSST---TCCEECC--TTCCHHHHHH--HHHHHHHHHHHHHH
T ss_pred chhhccccCHHHHHHHHHHHHHCCeEEeecC---CCcEEEe--cccCHHHHHH--HHHHHHHHHHHHHh
Confidence 0 000123678899999999886543 2467774 5789999999 88999999987754
No 255
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.73 E-value=5.9e-16 Score=175.81 Aligned_cols=270 Identities=13% Similarity=0.110 Sum_probs=185.3
Q ss_pred HHHHHHHHhcC------CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe--
Q 001989 215 NFQTMIADLTG------LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS-- 286 (985)
Q Consensus 215 e~q~~ia~L~g------~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v-- 286 (985)
++++.+|++++ .++.++.+++|+|.++++++.++ . ++||+|++++..|+++...++. .|.+++.+
T Consensus 70 ~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~-~--~~gd~vl~~~p~~~~~~~~~~~----~g~~~~~v~~ 142 (370)
T 2z61_A 70 ELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSI-I--DDGDEVLIQNPCYPCYKNFIRF----LGAKPVFCDF 142 (370)
T ss_dssp HHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHH-C--CTTCEEEEESSCCTHHHHHHHH----TTCEEEEECS
T ss_pred HHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHh-c--CCCCEEEEeCCCchhHHHHHHH----cCCEEEEeCC
Confidence 35566666664 56678999999998888777654 2 3789999999999999888753 57787776
Q ss_pred Cchhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC----CCC----CcccceEEEecC
Q 001989 287 DLKDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL----KPP----GELGADIVVGSA 356 (985)
Q Consensus 287 ~~~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l----~~~----~~~GaDi~v~s~ 356 (985)
|+++|++ +++++++|++.+| |++|.+.|++ |.++|+++|+++++| +..+.+.. .+. +..+.|++++|.
T Consensus 143 d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~D-e~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~ 220 (370)
T 2z61_A 143 TVESLEEALSDKTKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISD-EIYNGLVYEGKCYSAIEFDENLEKTILINGF 220 (370)
T ss_dssp SHHHHHHHCCSSEEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEE-CTTTTCBSSSCCCCGGGTCTTCSSEEEEEES
T ss_pred CHHHHHHhcccCceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEE-cchhhcccCCCCcCHHHccCCCCcEEEEecC
Confidence 4577877 8888999999988 6799999999 999999999999995 33333222 111 234789999998
Q ss_pred -ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHH
Q 001989 357 -QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYA 435 (985)
Q Consensus 357 -k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l 435 (985)
|.|+.| |-.+|++++++++.+.+.....+ ...+.|. ....+..++ +
T Consensus 221 sK~~~~~----G~r~G~~~~~~~~~~~~~~~~~~------------------------~~~~~~~---~~~~a~~~~--l 267 (370)
T 2z61_A 221 SKLYAMT----GWRIGYVISNDEIIEAILKLQQN------------------------LFISAPT---ISQYAALKA--F 267 (370)
T ss_dssp TTTTTCG----GGCCEEEECCHHHHHHHHHHHHH------------------------HTSSSCH---HHHHHHGGG--G
T ss_pred hhccCCc----cceEEEEEECHHHHHHHHHHHhh------------------------cccCCCH---HHHHHHHHH--H
Confidence 776422 12379999998877655110000 0011111 111111111 1
Q ss_pred HHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC-CHHHHHHHHH-HcCceeeee------cCCeE
Q 001989 436 VYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA-DAHAIASAAY-KIEMNLRVV------DSNTV 507 (985)
Q Consensus 436 ~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-~~~~v~~~L~-~~GI~~~~~------~~~~l 507 (985)
..++.+.++++.++..++.+++.+.|+++| +++..+....-+.+..+ +..++.+.|. ++||.+... ..+.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~ 346 (370)
T 2z61_A 268 EKETEREINSMIKEFDRRRRLVLKYVKDFG-WEVNNPIGAYYVFPNIGEDGREFAYKLLKEKFVALTPGIGFGSKGKNYI 346 (370)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CBCCCCCBTTEECCBCSSCHHHHHHHHHHHHCEECEEGGGGCGGGSSBE
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHcC-CeecCCCcceEEEEecCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEE
Confidence 211355678888899999999999999886 77653211111223555 4788999997 789987542 14789
Q ss_pred EEEeccCCCHHHHHHHHHHHhC
Q 001989 508 TASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 508 ris~t~~~t~edId~li~aL~~ 529 (985)
|++++ +++++|+++++.|.+
T Consensus 347 Ri~~~--~~~~~i~~~~~~l~~ 366 (370)
T 2z61_A 347 RISYA--NSYENIKEGLERIKE 366 (370)
T ss_dssp EEECC--SCHHHHHHHHHHHHH
T ss_pred EEEEe--CCHHHHHHHHHHHHH
Confidence 99999 699999999998863
No 256
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.73 E-value=3.7e-16 Score=177.13 Aligned_cols=266 Identities=13% Similarity=0.124 Sum_probs=186.7
Q ss_pred HHHHHHHHHhcCC-CCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001989 214 LNFQTMIADLTGL-PMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 214 ~e~q~~ia~L~g~-~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---- 288 (985)
.++++.+|+++|. +..++.+++|+|.+++.++.++ . ++||+|+++...|+.+...++ ..|.+++.++.
T Consensus 70 ~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~--~~gd~Vl~~~~~~~~~~~~~~----~~g~~~~~v~~~~~~ 142 (367)
T 3euc_A 70 EALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAA-A--RPGAKVMAPVPGFVMYAMSAQ----FAGLEFVGVPLRADF 142 (367)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHT-C--CTTCEEEEEESCSCCSCHHHH----TTTCEEEEEECCTTS
T ss_pred HHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHH-c--CCCCEEEEcCCCHHHHHHHHH----HcCCeEEEecCCCCC
Confidence 4678899999999 6678999999998887766654 2 388999999999998887764 46888887754
Q ss_pred ----hhhhc-cCC-CEeEEEEEcC-CCCeee---ccHHHHHHHHHhC--CcEEEEEecCcc-cc---CCCCCCcccceEE
Q 001989 289 ----KDIDY-KSG-DVCGVLVQYP-GTEGEV---LDYGDFIKNAHAN--GVKVVMATDLLA-LT---ILKPPGELGADIV 352 (985)
Q Consensus 289 ----~~l~~-l~~-~t~~V~v~~p-n~~G~v---~di~~I~~~a~~~--galliV~a~~~~-lg---~l~~~~~~GaDi~ 352 (985)
++|++ +++ ++++|++++| |.+|.+ +++++|+++|+++ |+++++|. ..+ ++ .......++.+++
T Consensus 143 ~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~i~ 221 (367)
T 3euc_A 143 TLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDE-AYQPFAQESWMSRLTDFGNLLV 221 (367)
T ss_dssp CCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEEC-TTCCSSSCCSGGGGGTCTTEEE
T ss_pred CCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeC-cchhhcccchHHHHhhCCCEEE
Confidence 34555 665 8999999988 679998 4688999999999 99999953 322 11 1111234567788
Q ss_pred EecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHH
Q 001989 353 VGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMA 431 (985)
Q Consensus 353 v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~a 431 (985)
++|. |. +. +|..+|++.+++++.+.+... . + ..+.| .....+..+
T Consensus 222 ~~s~sK~-~~----~G~r~G~~~~~~~~~~~~~~~----------~---------------~-~~~~~---~~~~~a~~~ 267 (367)
T 3euc_A 222 MRTVSKL-GL----AGIRLGYVAGDPQWLEQLDKV----------R---------------P-PYNVN---VLTEATALF 267 (367)
T ss_dssp EEECCCT-TS----CSCCEEEEEECHHHHHHHGGG----------C---------------C-SSCCC---HHHHHHHHH
T ss_pred Eecchhh-cc----cccCceeeeeCHHHHHHHHHh----------C---------------C-CCCCC---HHHHHHHHH
Confidence 8887 65 42 345679999988877655110 0 0 00111 111212212
Q ss_pred HHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCCHHHHHHHHHHcCceeeee------cCC
Q 001989 432 AMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNLRVV------DSN 505 (985)
Q Consensus 432 a~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~GI~~~~~------~~~ 505 (985)
+ +. ..+.++++.++..++.+++.+.|+++.++++... ...-+.+.+++..++.+.|.++||.++.. ..+
T Consensus 268 ~--l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~-~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~ 342 (367)
T 3euc_A 268 A--LE--HVAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPS-AANFLLARVPDAAQTFDRLLARKVLIKNVSKMHPLLAN 342 (367)
T ss_dssp H--HT--THHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCC-SSSEEEEECSCHHHHHHHHHTTTEECEECGGGCGGGTT
T ss_pred H--hc--CHHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCC-CCeEEEEECCCHHHHHHHHHHCCeEEEECCccCCCCCC
Confidence 1 12 2456788999999999999999999833886532 12223455556788999999999988643 247
Q ss_pred eEEEEeccCCCHHHHHHHHHHHhC
Q 001989 506 TVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 506 ~lris~t~~~t~edId~li~aL~~ 529 (985)
.+|++++ |++|+|+++++|.+
T Consensus 343 ~iRis~~---~~~~i~~~~~~l~~ 363 (367)
T 3euc_A 343 CLRVTVS---TPEENAQFLEAFAA 363 (367)
T ss_dssp EEEEECC---CHHHHHHHHHHHHH
T ss_pred EEEEecC---CHHHHHHHHHHHHH
Confidence 8999976 99999999999974
No 257
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.72 E-value=3.3e-16 Score=180.06 Aligned_cols=270 Identities=15% Similarity=0.113 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--h
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--K 289 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--~ 289 (985)
.+.++++.+|+++|.+ ...++.+||.+++.++. + . ++||+||++...|+++...+...++..|++++.+|. +
T Consensus 56 ~~~~lr~~la~~~g~~--~~i~~~sGt~a~~~al~-~-~--~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~ 129 (393)
T 1n8p_A 56 NRENLERAVAALENAQ--YGLAFSSGSATTATILQ-S-L--PQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLLN 129 (393)
T ss_dssp HHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHH-T-S--CSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSHHH
T ss_pred hHHHHHHHHHHHhCCC--cEEEECChHHHHHHHHH-H-c--CCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCChH
Confidence 4667889999999987 36677777766665554 2 2 378999999999998888776556778999999987 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhC----CcEEEEEecCccccCCCCCCcccceEEEecC-cccccc
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHAN----GVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVP 362 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~----galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P 362 (985)
++++ ++++|++|++.+| |.+|.+.|+++|+++||++ |+++++| +.++.+....+.++|+|+++.|+ |.++
T Consensus 130 ~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD-~a~~~~~~~~~~~~~~di~~~S~sK~~g-- 206 (393)
T 1n8p_A 130 DLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVD-NTFLSPYISNPLNFGADIVVHSATKYIN-- 206 (393)
T ss_dssp HHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEE-CTTTHHHHCCGGGGTCSEEEEETTTTTT--
T ss_pred HHHHhcccCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEe-CCccccccCCHHHcCCeEEEEECccccc--
Confidence 5666 7889999999988 7899999999999999999 9999995 34554444456678999999998 6553
Q ss_pred CCCCCCc--E-EEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHh
Q 001989 363 MGYGGPH--A-AFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYH 438 (985)
Q Consensus 363 ~~~GGP~--~-G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~ 438 (985)
||| . |+++++ +++++.+.. .++..|+.. ++...++...+
T Consensus 207 ----~~G~rigG~~~~~~~~~~~~l~~-------------------------~~~~~g~~~--~~~~~~~~~~~------ 249 (393)
T 1n8p_A 207 ----GHSDVVLGVLATNNKPLYERLQF-------------------------LQNAIGAIP--SPFDAWLTHRG------ 249 (393)
T ss_dssp ----CSSCCCCEEEEESCHHHHHHHHH-------------------------HHHHHCCCC--CHHHHHHHHHH------
T ss_pred ----CCCCceeEEEEeCCHHHHHHHHH-------------------------HHHhcCCCC--CHHHHHHHHhc------
Confidence 344 3 888885 666655410 001111110 01111111111
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhcCCC-eE-E-cCC----C------------C-cceEEEecCC----HHHHHHHHHH
Q 001989 439 GPEGLKTIAQRVHGLAGTFALGLKKLGT-VE-V-QGL----P------------F-FDTVKVKCAD----AHAIASAAYK 494 (985)
Q Consensus 439 g~~Gl~~i~~~~~~~a~~l~~~L~~~g~-~~-~-~~~----~------------~-~~~~~~~~~~----~~~v~~~L~~ 494 (985)
.+.+....++..+++.++++.|++.+. +. + ... + . ...+.|.+++ +..+.+.|..
T Consensus 250 -l~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~ 328 (393)
T 1n8p_A 250 -LKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRL 328 (393)
T ss_dssp -HTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSS
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCc
Confidence 123555666777888889999988753 33 2 110 1 2 3456677764 3334444432
Q ss_pred cCceee--------e-------------------ecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 495 IEMNLR--------V-------------------VDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 495 ~GI~~~--------~-------------------~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
.++.++ . +.++.+|+|++..+++++|+.+.++|.
T Consensus 329 ~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~ 389 (393)
T 1n8p_A 329 FTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALK 389 (393)
T ss_dssp SEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHH
T ss_pred ceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHH
Confidence 232211 0 014789999999999999999999986
No 258
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.72 E-value=1.4e-15 Score=173.65 Aligned_cols=325 Identities=13% Similarity=0.113 Sum_probs=202.5
Q ss_pred HHHHHHHHhcCCCccceecCCCCCCCCCcHHHHHHHHhC--CccccccCCChhhHhhhHHHHHHHHHHHHHHhcCC--CC
Q 001989 153 MIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMEN--PAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGL--PM 228 (985)
Q Consensus 153 ~~~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~--~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~--~~ 228 (985)
+.+..+++...+..+.+| +.|..+...|+.+.+++.+. .. ...|++. +|..+...++.+.+.+..|. ++
T Consensus 18 ~~~~~~~~~~~g~~~i~l-~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~-----~g~~~l~~~la~~~~~~~g~~~~~ 90 (388)
T 1j32_A 18 IDAKAKAMKAEGIDVCSF-SAGEPDFNTPKHIVEAAKAALEQG-KTRYGPA-----AGEPRLREAIAQKLQRDNGLCYGA 90 (388)
T ss_dssp THHHHHHHHTTTCCCEEC-CCSSCSSCCCHHHHHHHHHHHHTT-CCSCCCT-----TCCHHHHHHHHHHHHHHHCCCCCG
T ss_pred HHHHHHHHHhcCCCEEEC-CCCCCCCCCCHHHHHHHHHHHhcC-CCCCCCC-----CCCHHHHHHHHHHHHHhcCCCCCh
Confidence 344444444444333332 44444444566654443321 11 2334432 22222222333344444464 55
Q ss_pred cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----------hhhhc-cCCC
Q 001989 229 SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----------KDIDY-KSGD 297 (985)
Q Consensus 229 ~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----------~~l~~-l~~~ 297 (985)
.++.+++|+|.+++.++.++ . ++||+|++++..|+++...++. .|++++.++. ++|++ ++++
T Consensus 91 ~~v~~~~g~~~a~~~~~~~~-~--~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~ 163 (388)
T 1j32_A 91 DNILVTNGGKQSIFNLMLAM-I--EPGDEVIIPAPFWVSYPEMVKL----AEGTPVILPTTVETQFKVSPEQIRQAITPK 163 (388)
T ss_dssp GGEEEESHHHHHHHHHHHHH-C--CTTCEEEEESSCCTHHHHHHHH----TTCEEEEECCCGGGTTCCCHHHHHHHCCTT
T ss_pred hhEEEcCCHHHHHHHHHHHh-c--CCCCEEEEcCCCChhHHHHHHH----cCCEEEEecCCcccCCCCCHHHHHHhcCcC
Confidence 68889999998888777655 2 3789999999999998887653 5778877754 24555 7788
Q ss_pred EeEEEEEcC-CCCeee---ccHHHHHHHHHhCCcEEEEEecCccccCCC-----CCC-----cccceEEEecC-cccccc
Q 001989 298 VCGVLVQYP-GTEGEV---LDYGDFIKNAHANGVKVVMATDLLALTILK-----PPG-----ELGADIVVGSA-QRFGVP 362 (985)
Q Consensus 298 t~~V~v~~p-n~~G~v---~di~~I~~~a~~~galliV~a~~~~lg~l~-----~~~-----~~GaDi~v~s~-k~lg~P 362 (985)
+++|++++| |++|.+ +++++|+++||++|+++++|. .++..... +.. .++.|++++|. |.|+.|
T Consensus 164 ~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~ 242 (388)
T 1j32_A 164 TKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDE-IYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMT 242 (388)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC-TTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCT
T ss_pred ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEc-cchhcccCCCCCCCHHHccccccCCEEEEeechhccCCc
Confidence 999999998 679998 469999999999999999953 33322111 111 15789999998 766422
Q ss_pred CCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH-HHHHhCcc
Q 001989 363 MGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM-YAVYHGPE 441 (985)
Q Consensus 363 ~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~-~l~~~g~~ 441 (985)
|..+|++++++++.+.+... +...+.+. + .+ +..++. .+. .+.+
T Consensus 243 ----G~r~G~~~~~~~~~~~l~~~--------------------------~~~~~~~~--~-~~-~~~a~~~~l~-~~~~ 287 (388)
T 1j32_A 243 ----GWRVGFLAGPVPLVKAATKI--------------------------QGHSTSNV--C-TF-AQYGAIAAYE-NSQD 287 (388)
T ss_dssp ----TTCCEEEECCHHHHHHHHHH--------------------------HHTTTCSC--C-HH-HHHHHHHHHH-SCSH
T ss_pred ----ccceEEEEeCHHHHHHHHHH--------------------------HhhcccCC--C-HH-HHHHHHHHHh-CCcH
Confidence 22379999988876654110 00111111 1 12 112221 122 3456
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC----CHHHHHHHHHH-cCceeeee----cCCeEEEEec
Q 001989 442 GLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA----DAHAIASAAYK-IEMNLRVV----DSNTVTASFD 512 (985)
Q Consensus 442 Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~----~~~~v~~~L~~-~GI~~~~~----~~~~lris~t 512 (985)
.++++.++..++.+++.+.|+++.++++..+....-+.+..+ +..++.+.|.+ +||.+... .++.+|++++
T Consensus 288 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~ 367 (388)
T 1j32_A 288 CVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYA 367 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEec
Confidence 688899999999999999999983377653221101122332 27889999986 69988642 1578999987
Q ss_pred cCCCHHHHHHHHHHHhC
Q 001989 513 ETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 513 ~~~t~edId~li~aL~~ 529 (985)
+++++|+++++.|.+
T Consensus 368 --~~~~~i~~~~~~l~~ 382 (388)
T 1j32_A 368 --TDLDTIKRGMERLEK 382 (388)
T ss_dssp --SCHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHH
Confidence 799999999998874
No 259
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.72 E-value=5.4e-16 Score=181.64 Aligned_cols=296 Identities=15% Similarity=0.169 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc------
Q 001989 632 EMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------ 702 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~------ 702 (985)
+...+++++++++++.+ ...++.+||++|+++++++++.+ .++++||+ ...+||.........+.
T Consensus 107 ~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~------~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 180 (453)
T 4ffc_A 107 EQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLA------TGRPAVVAFDNAYHGRTNLTMALTAKSMPYKS 180 (453)
T ss_dssp HHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTT
T ss_pred HHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHh------cCCCEEEEEcCccCCcchHHHhhcCCCccccc
Confidence 34567889999998743 23567789999998888777654 14566776 56788877665443221
Q ss_pred -------EEEEEcCCC-----CCCCC-------HHHHHHHHHhcCCCEEEEEEEcCC-CccccccC----HHHHHHHHHH
Q 001989 703 -------KIVSVGTDA-----KGNIN-------IEELRKAAEANRDNLSTLMVTYPS-THGVYEEG----IDEICKIIHD 758 (985)
Q Consensus 703 -------~vv~v~~d~-----~g~iD-------~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d----i~eI~~la~~ 758 (985)
.+..+|++. .|..+ +++|++.+. ++++++|+++..+ +.|++. + +++|.++|++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~--~~~~aavi~ep~~~~gG~~~-~~~~~l~~l~~l~~~ 257 (453)
T 4ffc_A 181 QFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIG--AQSLAAIIIEPIQGEGGFIV-PAPGFLATLTAWASE 257 (453)
T ss_dssp TSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTC--GGGEEEEEECSSBTTTTSBC-CCTTHHHHHHHHHHH
T ss_pred CCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcC--CCCEEEEEEcCCCCCCCccc-CCHHHHHHHHHHHHH
Confidence 455666531 12111 345555543 1345555554333 456664 3 9999999999
Q ss_pred cCCEEEEEccccccccCCCCCCc--------cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC
Q 001989 759 NGGQVYMDGANMNAQVGLTSPGY--------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI 830 (985)
Q Consensus 759 ~galliVD~a~~~~~~~l~~pg~--------~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~ 830 (985)
+|+++|+|++|. + +.+.+. ..+|+++++ |+|+ +|.++|++++++++.+.+.....+
T Consensus 258 ~~~llI~DEv~~-g---~g~~g~~~a~~~~~~~pdi~t~s--K~~~-----~G~~~G~~~~~~~i~~~~~~~~~~----- 321 (453)
T 4ffc_A 258 NGVVFIADEVQT-G---FARTGAWFASEHEGIVPDIVTMA--KGIA-----GGMPLSAVTGRAELMDAVYAGGLG----- 321 (453)
T ss_dssp HTCEEEEECTTT-T---TTTTSSSSTHHHHTCCCSEEEEC--GGGG-----TTSSCEEEEEEHHHHTTSCTTSSC-----
T ss_pred cCCEEEEecCcc-C---CCcccccchhhhcCCCcchHhhh--hhhc-----CCcCeEEEEECHHHHhhhcccCcC-----
Confidence 999999999873 2 222222 236888764 8884 357889999888877655321100
Q ss_pred CCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc---cCCee--ecCCCCceeeEE
Q 001989 831 PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---HYPIL--FRGVNGTVAHEF 905 (985)
Q Consensus 831 ~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~---g~~l~--~~~~~~~~~~~~ 905 (985)
+. +.++++.++++.+.|..+..+++ .++..++.++++++|++ .+... ..+ .+.+ +
T Consensus 322 ---------~t----~~~~~~~~aaa~aal~~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g~~---~ 381 (453)
T 4ffc_A 322 ---------GT----YGGNPVTCAAAVAALGVMRELDL---PARARAIEASVTSRLSALAEEVDIIGEVRG-RGAM---L 381 (453)
T ss_dssp ---------CS----SSSCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCSSEEEEEE-ETTE---E
T ss_pred ---------CC----CCcCHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHHHHHHhhCCCeEEEEe-eceE---E
Confidence 11 12244555556666766544443 34555667777777764 22221 111 1222 2
Q ss_pred EEEecC--ccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 906 IVDLRG--LKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 906 iv~~~~--~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+.+.. .+........++.+.|.++|+.+..... ..+.+||+++..+|++||++ +++.|+++++++.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~iRi~~~~~~t~e~i~~--~l~~l~~~l~~~~ 450 (453)
T 4ffc_A 382 AIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGT-FGNVIRLLPPLVIGDDLLDE--GITALSDIIRAKA 450 (453)
T ss_dssp EEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECT-TSCEEEECCCTTCCHHHHHH--HHHHHHHHHHHHC
T ss_pred EEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCC-CCCEEEEECCCCCCHHHHHH--HHHHHHHHHHHHH
Confidence 233310 0000012356788999999998754321 23799999999999999999 8899999988754
No 260
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.72 E-value=3.5e-16 Score=178.51 Aligned_cols=273 Identities=12% Similarity=0.109 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-- 288 (985)
+...++++.+|+++|++ ...++.+||.+++.++.++ .++||+|+++...|+++...++ ..|.+++.++.
T Consensus 84 ~~~~~l~~~la~~~g~~--~~i~~~sGt~a~~~~~~~~---~~~gd~v~~~~~~~~~~~~~~~----~~g~~~~~~~~~d 154 (384)
T 1bs0_A 84 VVHQALEEELAEWLGYS--RALLFISGFAANQAVIAAM---MAKEDRIAADRLSHASLLEAAS----LSPSQLRRFAHND 154 (384)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHH---CCTTCEEEEETTCCHHHHHHHH----TSSSEEEEECTTC
T ss_pred HHHHHHHHHHHHHhCCC--cEEEeCCcHHHHHHHHHHh---CCCCcEEEEcccccHHHHHHHH----HcCCCEEEeCCCC
Confidence 55677889999999986 3556677787776655543 2478999999999999988875 35888888764
Q ss_pred -hhhhc-cCC---CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC---C--CCc--ccceEEEec
Q 001989 289 -KDIDY-KSG---DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK---P--PGE--LGADIVVGS 355 (985)
Q Consensus 289 -~~l~~-l~~---~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~---~--~~~--~GaDi~v~s 355 (985)
++|++ +++ ++++|++.+| |.+|.+.|+++|.++|+++|+++++| +..+.+... . +.. .+.|++++|
T Consensus 155 ~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-e~~~~~~~~~~~~~~~~~~~~~~di~~~s 233 (384)
T 1bs0_A 155 VTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVD-DAHGTGVIGEQGRGSCWLQKVKPELLVVT 233 (384)
T ss_dssp HHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEE-CTTTTTTSSGGGCCHHHHTTCCCSEEEEE
T ss_pred HHHHHHHHHhcCCCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEE-CCcccceecCCCCchHHhcCCCCcEEEee
Confidence 45655 432 4788888877 78999999999999999999999995 344444321 1 112 358999999
Q ss_pred C-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH
Q 001989 356 A-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY 434 (985)
Q Consensus 356 ~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~ 434 (985)
. |.|+ | || |++++++++++.+... + ..| ..+.+. +.....+..+++
T Consensus 234 ~sK~~~-~-----~G-G~~~~~~~~~~~l~~~---------~-~~~--------------~~~~~~-~~~~~~~~~~al- 280 (384)
T 1bs0_A 234 FGKGFG-V-----SG-AAVLCSSTVADYLLQF---------A-RHL--------------IYSTSM-PPAQAQALRASL- 280 (384)
T ss_dssp SSSTTS-S-----CC-EEEEECHHHHHHHHHH---------C-HHH--------------HSSBCC-CHHHHHHHHHHH-
T ss_pred ccchhh-c-----cC-cEEEeCHHHHHHHHHh---------c-hhh--------------hcCCCC-CHHHHHHHHHHH-
Confidence 8 7765 2 33 8999998877654100 0 000 001111 111222222332
Q ss_pred HHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC-CCCcceEEEecCC-HHHHHHHHHHcCceeeeec-------CC
Q 001989 435 AVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG-LPFFDTVKVKCAD-AHAIASAAYKIEMNLRVVD-------SN 505 (985)
Q Consensus 435 l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~~~-------~~ 505 (985)
..+....++++.++..++.+++.+.|+++| +++.. ...+-.+.+.... ..++.+.|.++||.+.... .+
T Consensus 281 -~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~ 358 (384)
T 1bs0_A 281 -AVIRSDEGDARREKLAALITRFRAGVQDLP-FTLADSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTA 358 (384)
T ss_dssp -HHHHSHHHHHHHHHHHHHHHHHHHHHTTSS-CEECSCCSSBCCEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCE
T ss_pred -HHHhccccHHHHHHHHHHHHHHHHHHHhcC-CcccCCCCCEEEEEeCCHHHHHHHHHHHHHCCcEEEeecCCCCCCCCc
Confidence 333221567888999999999999999997 88763 2222123332111 7789999999999876431 26
Q ss_pred eEEEEeccCCCHHHHHHHHHHHh
Q 001989 506 TVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 506 ~lris~t~~~t~edId~li~aL~ 528 (985)
.+|++++..+|++|+++++++|.
T Consensus 359 ~~Ri~~~~~~~~~~i~~~~~~l~ 381 (384)
T 1bs0_A 359 RLRLTLTAAHEMQDIDRLLEVLH 381 (384)
T ss_dssp EECCBCCTTCCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCHHHHHHHHHHHH
Confidence 79999999999999999999986
No 261
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.72 E-value=2.3e-16 Score=184.61 Aligned_cols=298 Identities=15% Similarity=0.127 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC-------
Q 001989 632 EMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG------- 701 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G------- 701 (985)
+...+++++++++++.+ ...++++||++|+++++++++.+ .++++||+ ...+||.........+
T Consensus 104 ~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~------~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~ 177 (451)
T 3oks_A 104 EGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSH------THKPAVVAFDHAYHGRTNLTMALTAKVMPYKD 177 (451)
T ss_dssp HHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTT
T ss_pred HHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHh------cCCCeEEEEcCCcCCccHHHHHhcCCCccccc
Confidence 34567889999998743 23567799999998888877754 14566776 6678887766544322
Q ss_pred ------cEEEEEcCCCC------C-------CCCHHHHHHHHHh--cCCCEEEEEEEcCC-CccccccC----HHHHHHH
Q 001989 702 ------MKIVSVGTDAK------G-------NINIEELRKAAEA--NRDNLSTLMVTYPS-THGVYEEG----IDEICKI 755 (985)
Q Consensus 702 ------~~vv~v~~d~~------g-------~iD~e~L~~~i~~--~~~~t~~Vvv~~pn-~~G~i~~d----i~eI~~l 755 (985)
..+..+|++.. | ..+++.+++.+++ ..+++++|+++..+ +.|++. + +++|.++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~-~~~~~l~~l~~l 256 (451)
T 3oks_A 178 GFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIV-PADGFLPTLLDW 256 (451)
T ss_dssp TCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBC-CCTTHHHHHHHH
T ss_pred CCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccC-CCHHHHHHHHHH
Confidence 14566665411 0 1135555555543 12356666654433 456665 3 9999999
Q ss_pred HHHcCCEEEEEccccccccCCCCC---C--ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCC
Q 001989 756 IHDNGGQVYMDGANMNAQVGLTSP---G--YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI 830 (985)
Q Consensus 756 a~~~galliVD~a~~~~~~~l~~p---g--~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~ 830 (985)
|+++|+++|+|++|. +++-.... . ...+|+++++ |+|+ +|.++|++++++++.+.+.....+
T Consensus 257 ~~~~g~~lI~DEv~~-g~g~~g~~~~~~~~~~~pdi~t~s--K~l~-----~G~~iG~v~~~~~~~~~~~~~~~~----- 323 (451)
T 3oks_A 257 CRKNDVVFIADEVQT-GFARTGAMFACEHEGIDPDLIVTA--KGIA-----GGLPLSAVTGRAEIMDSPHVSGLG----- 323 (451)
T ss_dssp HHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGG-----TTSSCEEEEEEHHHHTCSCTTSBC-----
T ss_pred HHHcCCEEEEEeccc-CCCccccchhhhhcCCCCCeeeeh--hhhh-----CCcceEEEEECHHHHhhhcCCCcC-----
Confidence 999999999999884 22211111 1 1236888664 8885 357889999888877655321110
Q ss_pred CCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEE
Q 001989 831 PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEF 905 (985)
Q Consensus 831 ~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~ 905 (985)
+. +.++++.++++.+.+..+..+++ .++..++.++++++|++. +... ..+ .+.+ +
T Consensus 324 ---------~t----~~~~~~~~aaa~aal~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~G~~---~ 383 (451)
T 3oks_A 324 ---------GT----YGGNPIACAAALATIETIESEGL---VARAQQIEKIMKDRLGRLQAEDDRIGDVRG-RGAM---I 383 (451)
T ss_dssp ---------CS----SSSCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCTTEEEEEE-ETTE---E
T ss_pred ---------CC----CCCCHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHHhhCCCeEEEEE-eeEE---E
Confidence 11 12244555556666766544433 345566677777777641 2221 111 1222 2
Q ss_pred EEEecC--ccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 906 IVDLRG--LKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 906 iv~~~~--~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.+.+.. .+...+....++.+.|.++|+.+.... +..+.+||+++..+|++||++ +++.|+++++
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~~iRi~~~~~~t~e~i~~--~l~~l~~~l~ 449 (451)
T 3oks_A 384 AMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCG-TYGNVVRFLPPLSIGDDLLNE--GLDVLEEVLR 449 (451)
T ss_dssp EEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEEC-TTSCEEEECCCTTCCHHHHHH--HHHHHHHHHH
T ss_pred EEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCC-CCCCEEEEECCCCCCHHHHHH--HHHHHHHHHh
Confidence 233310 000011235678999999999875432 123799999999999999999 7788888775
No 262
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.72 E-value=1.8e-16 Score=183.88 Aligned_cols=291 Identities=12% Similarity=0.092 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHH------------
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAM------------ 699 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~------------ 699 (985)
...+++++++++++-....++.++|++++++++++++.+. ++++||+ ...+||........
T Consensus 93 ~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~~------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 166 (427)
T 3fq8_A 93 LENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYT------GRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPS 166 (427)
T ss_dssp HHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH------CCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCS
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhh------CCCEEEEECCCcCCCCHHHHHhcCCcccccCCCC
Confidence 3557888999998622335677899999988877666542 3456666 56778755332111
Q ss_pred -CCc------EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccC----HHHHHHHHHHcCCEEEEEc
Q 001989 700 -CGM------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG----IDEICKIIHDNGGQVYMDG 767 (985)
Q Consensus 700 -~G~------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d----i~eI~~la~~~galliVD~ 767 (985)
.|+ ++..+|.+ |+++|+++++++++++++|+++.++ ..|.+. + +++|.++|+++|+++|+|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~-~~~~~l~~l~~l~~~~~~~li~DE 240 (427)
T 3fq8_A 167 SPGVPKKTTANTLTTPYN-----DLEAVKALFAENPGEIAGVILEPIVGNSGFIV-PDAGFLEGLREITLEHDALLVFDE 240 (427)
T ss_dssp CSSSCHHHHTTEEEEETT-----CHHHHHHHHHHSTTTEEEEEECSSBCTTSCBC-CCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCCCcccCceeecCCC-----CHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEec
Confidence 111 24555553 8999999998655578888877654 578776 6 9999999999999999999
Q ss_pred cccccccCCCCC-----CccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCC
Q 001989 768 ANMNAQVGLTSP-----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTI 842 (985)
Q Consensus 768 a~~~~~~~l~~p-----g~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i 842 (985)
+|. ++ ..... ....+|++++| |+|+ +|.++|++++++++.+.+...... ..
T Consensus 241 v~~-g~-~~g~~~~~~~~~~~~di~t~s--K~~~-----~G~~~G~~~~~~~~~~~~~~~~~~---------------~~ 296 (427)
T 3fq8_A 241 VIT-GF-RIAYGGVQEKFGVTPDLTTLG--KIIG-----GGLPVGAYGGKREIMQLVAPAGPM---------------YQ 296 (427)
T ss_dssp TTT-BT-TTBTTHHHHHTTCCCSEEEEC--GGGG-----TTSSCEEEEECHHHHTTBTTTSSB---------------CC
T ss_pred ccc-cc-ccCcchhhHhcCCCCChhhhh--hhhh-----CCcceEEEEEcHHHHHhhccCCCc---------------cc
Confidence 984 22 11110 11236887665 9885 356789999998877655321000 00
Q ss_pred CCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCe--eecCCCCceeeEEEEEecCcc----
Q 001989 843 AAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPI--LFRGVNGTVAHEFIVDLRGLK---- 913 (985)
Q Consensus 843 ~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l--~~~~~~~~~~~~~iv~~~~~~---- 913 (985)
.+++.+++..++++.+.+..+..+++ .++..++.++++++|++. +.+ ...+. +. + +.+.+....
T Consensus 297 ~~t~~~~~~~~aa~~aal~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-g~-~--~~~~~~~~~~~~~ 369 (427)
T 3fq8_A 297 AGTLSGNPLAMTAGIKTLELLRQPGT---YEYLDQITKRLSDGLLAIAQETGHAACGGQV-SG-M--FGFFFTEGPVHNY 369 (427)
T ss_dssp CCTTTTCHHHHHHHHHHHHHHTSTTH---HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEE-TT-E--EEEESSSCCCCSH
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe-ee-E--EEEEEecCccccc
Confidence 01122244555556666776654443 345667777788777651 222 11110 11 1 233332100
Q ss_pred ----ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 914 ----NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 914 ----~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
...+....++.+.|.++|+.+..... .|++++..+|+|||++ +++.|++++++
T Consensus 370 ~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~-----~r~~~~~~~t~e~i~~--~l~~l~~~l~~ 426 (427)
T 3fq8_A 370 EDAKKSDLQKFSRFHRGMLEQGIYLAPSQF-----EAGFTSLAHTEEDIDA--TLAAARTVMSA 426 (427)
T ss_dssp HHHTTSCHHHHHHHHHHHHHTTEECCSSTT-----SCEECCTTCCHHHHHH--HHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHCCcEEecCCC-----CCEEeeCcCCHHHHHH--HHHHHHHHHHh
Confidence 00000145789999999998865432 2566778899999999 78888888764
No 263
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.72 E-value=2.7e-16 Score=182.38 Aligned_cols=295 Identities=16% Similarity=0.062 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe-Cc--
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS-DL-- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v-~~-- 288 (985)
...++++.+|+++|.+. ..++.+||+++++++.++ + ++||+||++...|+++...+..+++..|++++.+ +.
T Consensus 59 ~~~~l~~~la~~~g~~~--~v~~~sGt~A~~~~l~~~-~--~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d 133 (421)
T 2ctz_A 59 TVDVLEKRLAALEGGKA--ALATASGHAAQFLALTTL-A--QAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREER 133 (421)
T ss_dssp HHHHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHH-C--CTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCC
T ss_pred HHHHHHHHHHHHhCCCc--eEEecCHHHHHHHHHHHH-h--CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCC
Confidence 45678899999999873 456777787777766554 2 3889999999999999999865555679999999 65
Q ss_pred -hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCc-cccCCCCCCcccceEEEecC-ccccccC
Q 001989 289 -KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLL-ALTILKPPGELGADIVVGSA-QRFGVPM 363 (985)
Q Consensus 289 -~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~-~lg~l~~~~~~GaDi~v~s~-k~lg~P~ 363 (985)
+++++ ++++|++|++.+| |.+|.+.|+++|+++||++|+++++| +.+ +.|....+..+|+|++++|. |.|++|
T Consensus 134 ~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD-~~~~~~g~~~~~~~~~~Di~~~s~~K~l~~~- 211 (421)
T 2ctz_A 134 PEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVD-NTFGMGGYLLRPLAWGAALVTHSLTKWVGGH- 211 (421)
T ss_dssp HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEE-CGGGGGGTSCCGGGGTCSEEEEETTTTTTCS-
T ss_pred HHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEE-CCcccccccCCccccCCeEEEECCcccccCC-
Confidence 45666 8889999999987 78999999999999999999999995 355 66654456678999999998 877654
Q ss_pred CCCCCcEEEEEEch--hh----HhcCCCceeeeeecCCCCcceeeecccc--cccccccccCCCcc--chhHHHHHHHHH
Q 001989 364 GYGGPHAAFLATSQ--EY----KRMMPGRIVGVSIDSSGKPALRVAMQTR--EQHIRRDKATSNIC--TAQALLANMAAM 433 (985)
Q Consensus 364 ~~GGP~~G~l~~~~--~~----~~~lp~~~vG~t~d~~g~~~~~l~l~tr--e~~irre~atsni~--t~~~l~a~~aa~ 433 (985)
|+|-.|+++.++ ++ .+.+.+...|+. |.. +.-.+... ....|.+. .+.+ ...++ .+
T Consensus 212 --g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~----g~~-~~~~~~~~~~~~~~r~~~--~~~~g~~~~~~---~a-- 277 (421)
T 2ctz_A 212 --GAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYH----GLR-LTEAFGELAFIVKARVDG--LRDQGQALGPF---EA-- 277 (421)
T ss_dssp --SCCCCEEEEECSCSCCTTTTCHHHHSCBGGGT----TBC-HHHHHGGGHHHHHHHHTH--HHHHCCCCCHH---HH--
T ss_pred --CCcEEEEEEeccchhhcccchhhhccccchhh----hhh-hhhhcchhHHHHHHHHHH--HHhcCCCCCHH---HH--
Confidence 222234555422 22 222322222210 000 00000000 00111110 0000 00111 11
Q ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC-C-----------------CCcceEEEecCC-HHHHHHHHHH
Q 001989 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG-L-----------------PFFDTVKVKCAD-AHAIASAAYK 494 (985)
Q Consensus 434 ~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~-----------------~~~~~~~~~~~~-~~~v~~~L~~ 494 (985)
|+...+.+-+....++..++++++.+.|+++.+++.+. + .....+.|.+++ ..+..+.+.+
T Consensus 278 ~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~~~~~~~~~~~~ 357 (421)
T 2ctz_A 278 WVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISR 357 (421)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHHHHHHT
T ss_pred HHHHcCcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHh
Confidence 11222233345556666789999999999984487652 1 122357777765 3344444433
Q ss_pred c---Cceeee---------------------------ecCCeEEEEeccCCCHHHHHHHHHHH
Q 001989 495 I---EMNLRV---------------------------VDSNTVTASFDETTTLEDVDKLFIVF 527 (985)
Q Consensus 495 ~---GI~~~~---------------------------~~~~~lris~t~~~t~edId~li~aL 527 (985)
. ++.++. +.++.||+|++..+.++.|+.|.++|
T Consensus 358 l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~e~~~~li~~l~~al 420 (421)
T 2ctz_A 358 LKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGLEHVEDLKAELKEAL 420 (421)
T ss_dssp CSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHT
T ss_pred CCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCCCCHHHHHHHHHHHh
Confidence 2 221110 11478999999887777777776665
No 264
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.72 E-value=7e-16 Score=174.15 Aligned_cols=320 Identities=10% Similarity=0.036 Sum_probs=204.0
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCcccc--ccCCChh-hHhhhHHHHHHHHHHHHHHhcCCC-Ccceeeccch-HHHHHHHH
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYT--QYTPYQA-EIAQGRLESLLNFQTMIADLTGLP-MSNASLLDEG-TAAAEAMA 245 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t--~~~pyq~-e~sqg~l~~i~e~q~~ia~L~g~~-~~~~sl~~~~-ta~~ea~~ 245 (985)
+..|.+ ..|+.+.+++.+.-.-+. ..+.|.. ..+.+..+.+.++++.+++++|.+ +.++.+++|+ |.+++++.
T Consensus 7 ~~~g~~--~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~ 84 (360)
T 1w23_A 7 FNAGPS--ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLP 84 (360)
T ss_dssp CCSSSC--CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHH
T ss_pred ecCCCc--CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHH
Confidence 345543 577777656554321110 0122211 014566678889999999999997 3578888888 88888777
Q ss_pred HHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---------hhhhc--cCCCEeEEEEEcC-CCCeeec
Q 001989 246 MCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---------KDIDY--KSGDVCGVLVQYP-GTEGEVL 313 (985)
Q Consensus 246 ~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---------~~l~~--l~~~t~~V~v~~p-n~~G~v~ 313 (985)
+++....+++++|+++...|++... ++..| +++.++. +++++ ++++|++|++.+| |++|.+.
T Consensus 85 ~~l~~~~~~g~~vi~~~~~~~~~~~-----~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG~~~ 158 (360)
T 1w23_A 85 MNLLTKGTIGNYVLTGSWSEKALKE-----AKLLG-ETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQY 158 (360)
T ss_dssp HHHCCTTCEEEEEECSHHHHHHHHH-----HHTTS-EEEEEEECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTEEC
T ss_pred HHhcCCCCcccEEEecchhHHHHHH-----HHHhC-CeEEeecccccCcCCccchHhhccCCCCCEEEEeCCCCCcceec
Confidence 6653211246778888777776322 23468 8777654 24543 5678999999987 8899996
Q ss_pred cHHHHHHHHHhCCcEEEEEecCccccCCC-CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeee
Q 001989 314 DYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVS 391 (985)
Q Consensus 314 di~~I~~~a~~~galliV~a~~~~lg~l~-~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t 391 (985)
| +|. +++|+++++| +.++.+... +..++ |+++++. |.|+ | +|+|++++++++++++.... ++
T Consensus 159 ~--~i~---~~~~~~li~D-~a~~~~~~~~~~~~~--di~~~s~sK~~~-~-----~G~G~~~~~~~~~~~~~~~~-~~- 222 (360)
T 1w23_A 159 Q--NFP---EINHAPLIAD-MSSDILSRPLKVNQF--GMIYAGAQKNLG-P-----SGVTVVIVKKDLLNTKVEQV-PT- 222 (360)
T ss_dssp S--SCC---CCCSSCEEEE-CTTTTTSSCCCGGGC--SEEEEETTTTTS-C-----TTCEEEEEEHHHHCSCCTTC-CG-
T ss_pred c--ccc---ccCCceEEEe-chhhcCCCCcCcccC--CEEEEEcccccC-C-----CCcEEEEEcHHHHhhcccCC-cc-
Confidence 6 333 3799999995 344554332 12233 8999998 6553 3 34899999999887764321 11
Q ss_pred ecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHHHHHHhcCCCe-EE
Q 001989 392 IDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKLGTV-EV 469 (985)
Q Consensus 392 ~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g~~-~~ 469 (985)
.+......+ .+...+|+|+ ....++.+++ .++..+ |++++.++..++++++.+.|++++++ .+
T Consensus 223 ---------~~~~~~~~~-~~~~~~~~~~---~~~~~~~~al--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 287 (360)
T 1w23_A 223 ---------MLQYATHIK-SDSLYNTPPT---FSIYMLRNVL--DWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVG 287 (360)
T ss_dssp ---------GGCHHHHHH-TTTCSSCCCH---HHHHHHHHHH--HHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEE
T ss_pred ---------hhhhhhhhh-ccCCCCCCCH---HHHHHHHHHH--HHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 111000000 1112234443 2333444443 444344 78999999999999999999998645 54
Q ss_pred cCCC--Ccc-eEEEecCC---HHHHHHHHHHcCceeeee--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 470 QGLP--FFD-TVKVKCAD---AHAIASAAYKIEMNLRVV--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 470 ~~~~--~~~-~~~~~~~~---~~~v~~~L~~~GI~~~~~--~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
...+ ... .+.+..++ ..++.+.|.++||.+... .++.+|++++.++|++|+++++++|+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~ 355 (360)
T 1w23_A 288 HAEKGSRSLMNVTFNLRNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQ 355 (360)
T ss_dssp SSCGGGBCSSEEEEECSSHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCchhccCcEEEEEcCCCccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 3111 223 45666664 567888899999987543 247899999999999999999999873
No 265
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.72 E-value=3.3e-16 Score=179.42 Aligned_cols=278 Identities=15% Similarity=0.143 Sum_probs=186.1
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
...++++.+|+++|.+ ++.++++||.++++++.++.. ++||+|+++...|+++..+++. .|++++.++.
T Consensus 57 ~~~~l~~~la~~~~~~--~~i~~~~gt~al~~~l~~~~~--~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~~~~~~~ 128 (391)
T 3dr4_A 57 FIVEFEKAFADYCGVK--HAIACNNGTTALHLALVAMGI--GPGDEVIVPSLTYIASANSVTY----CGATPVLVDNDPR 128 (391)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHTC--CTTCEEEEESSSCTHHHHHHHH----TTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCC--CCcCEEEECCCchHHHHHHHHH----CCCEEEEEecCcc
Confidence 3557889999999987 577889999888877766533 3889999999999999988763 5888888764
Q ss_pred ------hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCC---CCcccceEEEec--C
Q 001989 289 ------KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP---PGELGADIVVGS--A 356 (985)
Q Consensus 289 ------~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~---~~~~GaDi~v~s--~ 356 (985)
+++++ +++++++|+++ |++|.+.|+++|.++|+++|+++++| +..+.|.... .+.+ .|+++.+ .
T Consensus 129 ~~~~d~~~l~~~~~~~~~~v~~~--n~tG~~~~~~~i~~l~~~~~~~li~D-~a~~~g~~~~~~~~~~~-~di~~~S~s~ 204 (391)
T 3dr4_A 129 TFNLDAAKLEALITPRTKAIMPV--HLYGQICDMDPILEVARRHNLLVIED-AAEAVGATYRGKKSGSL-GDCATFSFFG 204 (391)
T ss_dssp TCSBCGGGSGGGCCTTEEEECCB--CGGGCCCCHHHHHHHHHHTTCEEEEE-CTTCTTCEETTEETTSS-SSEEEEECBT
T ss_pred ccCcCHHHHHHhcCCCceEEEEE--CCCCChhhHHHHHHHHHHcCCEEEEE-CcccccceECCeeeccc-CCEEEEECCC
Confidence 34555 77889988864 57899999999999999999999995 3445543322 2333 3777666 5
Q ss_pred -ccccccCCCCCCcEEEEEEch-hhHhcCCCce-eeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH
Q 001989 357 -QRFGVPMGYGGPHAAFLATSQ-EYKRMMPGRI-VGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 357 -k~lg~P~~~GGP~~G~l~~~~-~~~~~lp~~~-vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~ 433 (985)
|.|++ +.+|++.+++ ++.+.+.... .|.+.+ .. |.. ...| .|. .+.++.+++
T Consensus 205 ~K~l~~------g~gg~~~~~~~~~~~~~~~~~~~g~~~~---~~-~~~----------~~~g-~~~----~~~~l~aa~ 259 (391)
T 3dr4_A 205 NAIITT------GEGGMITTNDDDLAAKMRLLRGQGMDPN---RR-YWF----------PIVG-FNY----RMTNIQAAI 259 (391)
T ss_dssp TSSSCC------BSCEEEEESCHHHHHHHHHHHBTTCCTT---ST-TCC----------SSCC-CBC----BCCHHHHHH
T ss_pred CCcCCc------CCeEEEEECCHHHHHHHHHHHhcCCCCC---Cc-ccc----------cccc-ccc----CCCHHHHHH
Confidence 65532 2346666654 4544432111 111000 00 100 0111 111 111223333
Q ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-------CCcceEEEecC---C--HHHHHHHHHHcCceeee
Q 001989 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-------PFFDTVKVKCA---D--AHAIASAAYKIEMNLRV 501 (985)
Q Consensus 434 ~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-------~~~~~~~~~~~---~--~~~v~~~L~~~GI~~~~ 501 (985)
.+...++++++.++..++++++++.|+++| +++... ..+..+.+..+ + ..++.+.|.++||.++.
T Consensus 260 --~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~ 336 (391)
T 3dr4_A 260 --GLAQLERVDEHLAARERVVGWYEQKLARLG-NRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRP 336 (391)
T ss_dssp --HHHHHHTHHHHHHHHHHHHHHHHHHHGGGT-TSEECCCCCTTSCCCCSSEEEEECSSCSSCHHHHHHHHHHTTCCCEE
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-ccccCcCCCCCCcceeEEEEEEECCccchhHHHHHHHHHHCCCceee
Confidence 222235788899999999999999999985 766532 12223455443 2 88999999999997753
Q ss_pred ec------------------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 VD------------------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ~~------------------------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.. ...+|++++..+|+||||+++++|.+
T Consensus 337 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~ 388 (391)
T 3dr4_A 337 VFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQ 388 (391)
T ss_dssp CCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHT
T ss_pred cCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 21 25699999999999999999999975
No 266
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.72 E-value=1.5e-16 Score=183.39 Aligned_cols=162 Identities=20% Similarity=0.204 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~~ 709 (985)
..++++.+++++|.+ ..+.+++|++|+..++ + + ..++++||+++..|+.+... ++..|++++.++.
T Consensus 69 ~~~l~~~la~~~g~~-~~i~~~sG~~ai~~~~---~-l-----~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 138 (403)
T 3cog_A 69 RNCLEKAVAALDGAK-YCLAFASGLAATVTIT---H-L-----LKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDC 138 (403)
T ss_dssp HHHHHHHHHHHHTCS-EEEEESCHHHHHHHHH---T-T-----SCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECT
T ss_pred HHHHHHHHHHHhCCC-cEEEECCHHHHHHHHH---H-H-----hCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECC
Confidence 457889999999987 4566677876654333 2 2 14678999988877654332 3567999999997
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcC-CEEEEEccccccccCCCCCCccCCcEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNG-GQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~g-alliVD~a~~~~~~~l~~pg~~g~Di~ 787 (985)
+ |+++|+++++ ++|++|++++| |++|.+. |+++|+++|+++| +++++|+++... .+..|..+++|++
T Consensus 139 ~-----d~~~l~~~i~---~~t~~v~~~~p~nptG~~~-~l~~i~~la~~~g~~~livD~~~~~~--~~~~~~~~~~div 207 (403)
T 3cog_A 139 S-----KIKLLEAAIT---PETKLVWIETPTNPTQKVI-DIEGCAHIVHKHGDIILVVDNTFMSP--YFQRPLALGADIS 207 (403)
T ss_dssp T-----SHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHTSSSCCEEEEECTTTCT--TTCCTTTTTCSEE
T ss_pred C-----CHHHHHHhcC---cCCeEEEEECCCCCCCeee-CHHHHHHHHHHcCCCEEEEECCCccc--ccCCccccCCeEE
Confidence 5 8999999997 79999999999 5799998 8999999999999 999999998532 2234556789999
Q ss_pred EeCCcccccccCCCCCCceEEEEEc-ccccCcC
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFL 819 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~l 819 (985)
+.|+||+|+.| ||-.+|+++++ +++.+.+
T Consensus 208 ~~S~sK~~~g~---~~~~~G~v~~~~~~l~~~l 237 (403)
T 3cog_A 208 MYSATKYMNGH---SDVVMGLVSVNCESLHNRL 237 (403)
T ss_dssp EEETTTTTTCS---SCCCCEEEEECCHHHHHHH
T ss_pred EEcChhhccCC---CCCeEEEEEECcHHHHHHH
Confidence 99999998522 12235999985 4554433
No 267
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.71 E-value=1.8e-15 Score=174.57 Aligned_cols=272 Identities=17% Similarity=0.133 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
...++++.+|+++|.+ ++.++.+|+.++..++.++ . ++||+|+++...|+++...|+..++..|++++.++.
T Consensus 63 ~~~~l~~~ia~~~g~~--~~i~~~~g~~ai~~~~~~l-~--~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~ 137 (404)
T 1e5e_A 63 TVSNLEGKIAFLEKTE--ACVATSSGMGAIAATVLTI-L--KAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIP 137 (404)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHH-C--CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTST
T ss_pred HHHHHHHHHHHHhCCC--cEEEeCChHHHHHHHHHHH-h--CCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCH
Confidence 3456888999999986 4677888887776666554 2 389999999999999999776545568999999875
Q ss_pred hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHh-CCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCC
Q 001989 289 KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHA-NGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMG 364 (985)
Q Consensus 289 ~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~-~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~ 364 (985)
+++++ ++++|++|++.+| |++|.+.|+++|+++|++ +|+++++| +.++.+....|.++|+|+++.|. |+|++|
T Consensus 138 ~~l~~~i~~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~D-e~~~~~~~~~~~~~~~di~~~S~sK~~~~~-- 214 (404)
T 1e5e_A 138 GEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIAD-NTFCSPMITNPVDFGVDVVVHSATKYINGH-- 214 (404)
T ss_dssp THHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEE-CTTTCTTTCCGGGGTCSEEEEETTTTTTCS--
T ss_pred HHHHHhcCCCCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEE-CCCchhhhCCccccCCEEEEEcCccccCCC--
Confidence 45666 7889999999998 789999999999999999 99999995 45554444445678999999998 877643
Q ss_pred CCCCcEEEEEEchhhHh-cCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchH
Q 001989 365 YGGPHAAFLATSQEYKR-MMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGL 443 (985)
Q Consensus 365 ~GGP~~G~l~~~~~~~~-~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl 443 (985)
|++-+|++++++++++ .+.....+ + .+ .+. .++ +..+++ ..+ +.+
T Consensus 215 -g~ri~G~~~~~~~~~~~~l~~~~~~----------~--------------~g-~~~---~~~-~~~~~~--~~l--~~~ 260 (404)
T 1e5e_A 215 -TDVVAGLICGKADLLQQIRMVGIKD----------I--------------TG-SVI---SPH-DAWLIT--RGL--STL 260 (404)
T ss_dssp -SCCCCEEEEECHHHHHHHHHTCCCC----------C--------------CC-CCC---CHH-HHHHHH--HHH--TTH
T ss_pred -CCCeEEEEEECHHHHHHHHHHHHHh----------C--------------CC-CCC---CHH-HHHHHH--HhH--hHH
Confidence 2222489999988766 54210000 0 00 001 111 111111 111 234
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeE-Ec-CC----C-----------CcceEEEecCC-HHHHHHHHHHcCceeee----
Q 001989 444 KTIAQRVHGLAGTFALGLKKLGTVE-VQ-GL----P-----------FFDTVKVKCAD-AHAIASAAYKIEMNLRV---- 501 (985)
Q Consensus 444 ~~i~~~~~~~a~~l~~~L~~~g~~~-~~-~~----~-----------~~~~~~~~~~~-~~~v~~~L~~~GI~~~~---- 501 (985)
+...++..+++.++.+.|++...+. ++ .. | ..+-+.|.+++ ..++.+.|.+.||.+..
T Consensus 261 ~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~s~G 340 (404)
T 1e5e_A 261 NIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLG 340 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEESSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCCHHHHHHHHHhCCCceeccCCC
Confidence 5566666778888888887763243 21 11 1 13346677766 45667777777874321
Q ss_pred --------------------------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 --------------------------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 --------------------------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.++.+|+|++. ||+|++++.|.+
T Consensus 341 ~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~ 390 (404)
T 1e5e_A 341 GCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQ 390 (404)
T ss_dssp SSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHH
T ss_pred CcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHH
Confidence 114789999997 778888777764
No 268
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.71 E-value=2.4e-15 Score=173.40 Aligned_cols=319 Identities=9% Similarity=0.088 Sum_probs=202.6
Q ss_pred HHHHHHHHhcCCCccceecCCCCCCCCCcHHHHHHHHhCCc-cccccCCChhhHhhhHHHHHHHHHHHHHHhc----C--
Q 001989 153 MIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPA-WYTQYTPYQAEIAQGRLESLLNFQTMIADLT----G-- 225 (985)
Q Consensus 153 ~~~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~~~-~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~----g-- 225 (985)
+.+.+.++...+..+.+ ++.|.++...|+.+.+++ +.-+ ....|.+. +|. .++++.+|+++ |
T Consensus 31 ~~~~~~~~~~~g~~~i~-l~~~~~~~~~~~~v~~a~-~~l~~~~~~y~~~-----~g~----~~l~~~la~~~~~~~g~~ 99 (409)
T 2gb3_A 31 LVPFAEMAKKRGVRIHH-LNIGQPDLKTPEVFFERI-YENKPEVVYYSHS-----AGI----WELREAFASYYKRRQRVD 99 (409)
T ss_dssp GHHHHHHHHHTTCEEEE-CSSCCCCSCCCTHHHHHH-HHTCCSSCCCCCT-----TCC----HHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHhcCCCEEe-ccCCCCCCCCCHHHHHHH-HHHhcCCCCCCCC-----CCc----HHHHHHHHHHHHHHhCCC
Confidence 44445555444444333 344544444555555454 3211 12234331 222 23455566655 4
Q ss_pred CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---------hhhhc-cC
Q 001989 226 LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---------KDIDY-KS 295 (985)
Q Consensus 226 ~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---------~~l~~-l~ 295 (985)
.++.++.+++|+|.+++.++.++ . ++||+|+++...|+++...++. .|.+++.++. ++|++ ++
T Consensus 100 ~~~~~v~~~~g~t~a~~~~~~~~-~--~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~v~~~~~~~~~~~~~l~~~l~ 172 (409)
T 2gb3_A 100 VKPENVLVTNGGSEAILFSFAVI-A--NPGDEILVLEPFYANYNAFAKI----AGVKLIPVTRRMEEGFAIPQNLESFIN 172 (409)
T ss_dssp CCGGGEEEESHHHHHHHHHHHHH-C--CTTCEEEEEESCCTHHHHHHHH----HTCEEEEEECCGGGTSCCCTTGGGGCC
T ss_pred CCHHHEEEeCCHHHHHHHHHHHh-C--CCCCEEEEcCCCchhHHHHHHH----cCCEEEEeccCCCCCCccHHHHHHhhC
Confidence 45568889999998888777665 2 3789999999999998887653 4677777653 44555 77
Q ss_pred CCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCC----CC-Cc-ccceEEEecC-ccccccCC
Q 001989 296 GDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK----PP-GE-LGADIVVGSA-QRFGVPMG 364 (985)
Q Consensus 296 ~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~----~~-~~-~GaDi~v~s~-k~lg~P~~ 364 (985)
+++++|++.+| |.+|.+. ++++|.++|+++|+++++|. ..+.+... +. .. .+.|++++|. |.|+.|
T Consensus 173 ~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-a~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~-- 249 (409)
T 2gb3_A 173 ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDE-VYSEIVFRGEFASALSIESDKVVVIDSVSKKFSAC-- 249 (409)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC-TTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCG--
T ss_pred cCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEC-cccccccCCCCCCccccCCCCEEEEecchhccCCc--
Confidence 78999999988 6799874 69999999999999999953 33332211 10 12 3689999997 777422
Q ss_pred CCCCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhH-HHHHHHHHHHHHhCcch
Q 001989 365 YGGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQA-LLANMAAMYAVYHGPEG 442 (985)
Q Consensus 365 ~GGP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~-l~a~~aa~~l~~~g~~G 442 (985)
|-.+|++++++ ++.+.+... +...+ +.+.. ..++.++ +. .+.++
T Consensus 250 --G~r~G~~~~~~~~l~~~l~~~--------------------------~~~~~---~~~~~~~~a~~~~--l~-~~~~~ 295 (409)
T 2gb3_A 250 --GARVGCLITRNEELISHAMKL--------------------------AQGRL---APPLLEQIGSVGL--LN-LDDSF 295 (409)
T ss_dssp --GGCCEEEECSCHHHHHHHHHH--------------------------HHHSC---CCCHHHHHHHHHH--HT-CCHHH
T ss_pred --cceEEEEEECcHHHHHHHHHH--------------------------HhccC---CCCHHHHHHHHHH--Hh-ccHHH
Confidence 12268999988 776654100 00011 11111 1111111 11 25667
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEE-cCCCCcceEEEecCC--HHHHHHHHHHc------Cceeeee---------cC
Q 001989 443 LKTIAQRVHGLAGTFALGLKKLGTVEV-QGLPFFDTVKVKCAD--AHAIASAAYKI------EMNLRVV---------DS 504 (985)
Q Consensus 443 l~~i~~~~~~~a~~l~~~L~~~g~~~~-~~~~~~~~~~~~~~~--~~~v~~~L~~~------GI~~~~~---------~~ 504 (985)
++++.++..++.+++.+.|+++| +++ ..+....-+.+..++ ..++.++|.++ ||.+... .+
T Consensus 296 ~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~ 374 (409)
T 2gb3_A 296 FDFVRETYRERVETVLKKLEEHG-LKRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGK 374 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-CCCBCCCSBSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-ceeeeCCCeeEEEEEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCC
Confidence 88889999999999999999886 877 432111122335443 88899999887 9987542 14
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 505 NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 505 ~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+|++++ +|++||++++++|.+
T Consensus 375 ~~iRis~~--~~~e~i~~~~~~l~~ 397 (409)
T 2gb3_A 375 KEIRIACV--LEKDLLSRAIDVLME 397 (409)
T ss_dssp SEEEEECC--SCHHHHHHHHHHHHH
T ss_pred CEEEEEeC--CCHHHHHHHHHHHHH
Confidence 68999998 899999999999874
No 269
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.71 E-value=7.2e-15 Score=164.24 Aligned_cols=295 Identities=15% Similarity=0.116 Sum_probs=197.8
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhh
Q 001989 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI 250 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~ 250 (985)
++.+..|...|+.+.+++.+... .++.|. . . ...++++.+|+++|.++.++.+++|+|+++..+..++
T Consensus 21 l~~n~~~~~~~~~v~~a~~~~~~---~~~~y~-~--~----~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~~-- 88 (337)
T 3p1t_A 21 LAFNENPEAVEPRVQAAIAAAAA---RINRYP-F--D----AEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEF-- 88 (337)
T ss_dssp CSSCCCCSCCCHHHHHHHHHHGG---GTTSCC-T--T----HHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHS--
T ss_pred eeCCCCCCCCCHHHHHHHHHhhh---hhccCC-C--C----chHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHhc--
Confidence 45554555677777655554322 223331 1 1 2456789999999999889999999997777665543
Q ss_pred hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch--------hhhccCCCEeEEEEEcC-CCCeeeccHHHHHHH
Q 001989 251 QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--------DIDYKSGDVCGVLVQYP-GTEGEVLDYGDFIKN 321 (985)
Q Consensus 251 ~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~--------~l~~l~~~t~~V~v~~p-n~~G~v~di~~I~~~ 321 (985)
+||+|+++...|+++...+ +..|++++.++.+ ++++. .++++|++.+| |++|.+.|++++.++
T Consensus 89 ---~gd~vl~~~p~~~~~~~~~----~~~g~~~~~v~~~~~~~~d~~~l~~~-~~~~~v~i~~p~nptG~~~~~~~l~~l 160 (337)
T 3p1t_A 89 ---SSMRFVTAWPGFDGYRARI----AVSGLRHFEIGLTDDLLLDPNDLAQV-SRDDCVVLANPSNPTGQALSAGELDQL 160 (337)
T ss_dssp ---TTSEEEEESSSCSHHHHHH----TTSCCEEEEECBCTTSSBCHHHHTTC-CTTEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred ---CCCeEEEeCCCcHHHHHHH----HHcCCEEEEecCCCCCCCCHHHHHhh-cCCCEEEEeCCCCCCCCCCCHHHHHHH
Confidence 7899999999999988775 3568999888753 23332 46789999998 789999999999999
Q ss_pred HHhCCcEEEEEecCcc-ccCC--CCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCC
Q 001989 322 AHANGVKVVMATDLLA-LTIL--KPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGK 397 (985)
Q Consensus 322 a~~~galliV~a~~~~-lg~l--~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~ 397 (985)
|+++|. +++| +..+ ++.. ..+...+.|++++|. |.|+. .|..+|++++++++++.+...
T Consensus 161 ~~~~~~-~ivD-ea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~----~G~r~G~~~~~~~~~~~l~~~----------- 223 (337)
T 3p1t_A 161 RQRAGK-LLID-ETYVDYSSFRARGLAYGENELVFRSFSKSYGL----AGLRLGALFGPSELIAAMKRK----------- 223 (337)
T ss_dssp HHHCSE-EEEE-CTTGGGSSCSSSCCCCBTTEEEEEESSSTTCC----TTTCCEEEECCHHHHHHHHTT-----------
T ss_pred HHhCCc-EEEE-CCChhhccccccccccCCCEEEEeeCchhccC----cchheEEEEeCHHHHHHHHhh-----------
Confidence 999996 5554 3332 2211 122345678999997 77753 345579999888877655110
Q ss_pred cceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcce
Q 001989 398 PALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDT 477 (985)
Q Consensus 398 ~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~ 477 (985)
+...+.|. ....++.+ .+-..+.+++..++..++.+++.+.|+++| +++..+ ...-
T Consensus 224 ---------------~~~~~~~~---~~~~a~~~----~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~-~~~~ 279 (337)
T 3p1t_A 224 ---------------QWFCNVGT---LDLHALEA----ALDNDRAREAHIAKTLAQRRRVADALRGLG-YRVASS-EANF 279 (337)
T ss_dssp ---------------SCTTCSCH---HHHHHHHH----HHTCHHHHHHHHHHHHHHHHHHHHHHHHTT-CCBCCC-SSSE
T ss_pred ---------------cCCCCCCH---HHHHHHHH----HhCCHHHHHHHHHHHHHHHHHHHHHHHHCc-CEECCC-CCeE
Confidence 00011111 11212111 122223466777778888899999999986 776532 2223
Q ss_pred EEEecCCHHHHHHHHHHcCceeeeec----CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 478 VKVKCADAHAIASAAYKIEMNLRVVD----SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 478 ~~~~~~~~~~v~~~L~~~GI~~~~~~----~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+..++..++.+.|.++||.+.... ++.+|+|++ +++|+++++++|++
T Consensus 280 ~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~~~~l~~al~~ 332 (337)
T 3p1t_A 280 VLVENAAGERTLRFLRERGIQVKDAGQFGLHHHIRISIG---REEDNDRLLAALAE 332 (337)
T ss_dssp EEEECTTTHHHHHHHHHTTEECEEGGGGTCCSEEEEECC---CHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHCCeEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHH
Confidence 44555556678889999999886532 589999987 79999999999974
No 270
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.71 E-value=3.3e-16 Score=181.97 Aligned_cols=290 Identities=12% Similarity=0.142 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC-----------
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG----------- 701 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G----------- 701 (985)
..+++++++++++-....++.+||+++++.++++++.+. ++++||+ ...+||.........+
T Consensus 95 ~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~~------~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 168 (429)
T 4e77_A 95 EVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYT------GRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNS 168 (429)
T ss_dssp HHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH------CCCEEEEETTCCCC------------------CCC
T ss_pred HHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHhh------CCCEEEEEcCccCCCChhhhhhcCCcccccCCCCc
Confidence 457888999998633345677899999988887776542 3456666 5667876643221111
Q ss_pred --c------EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccC----HHHHHHHHHHcCCEEEEEcc
Q 001989 702 --M------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG----IDEICKIIHDNGGQVYMDGA 768 (985)
Q Consensus 702 --~------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d----i~eI~~la~~~galliVD~a 768 (985)
+ .+..++. .|+++|+++++++.+++++|+++..+ +.|++. + +++|.++|+++|++||+|++
T Consensus 169 ~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~-~~~~~l~~l~~l~~~~~~lli~DEv 242 (429)
T 4e77_A 169 PGVPTDFAKHTLTCTY-----NDLASVRQAFEQYPQEVACIIVEPVAGNMNCIP-PLPEFLPGLRALCDEFGALLIIDEV 242 (429)
T ss_dssp TTSCGGGGTTEEEECT-----TCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBC-CCTTHHHHHHHHHHHHTCEEEEEET
T ss_pred CCCCCccCCceeecCC-----CCHHHHHHHHHhcCCCEEEEEECCccCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEecc
Confidence 1 2333333 28999999998655677777765433 467776 5 99999999999999999998
Q ss_pred ccccccCCCCCC-----ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCC
Q 001989 769 NMNAQVGLTSPG-----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIA 843 (985)
Q Consensus 769 ~~~~~~~l~~pg-----~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~ 843 (985)
|. ++ ...... ...+|++++ .|+|+ +|.++|++++++++.+.+...-.. ...
T Consensus 243 ~~-g~-r~g~~~~~~~~~~~pdi~t~--sK~~~-----~G~~~G~~~~~~~~~~~l~~~~~~---------------~~~ 298 (429)
T 4e77_A 243 MT-GF-RVALAGAQDYYHVIPDLTCL--GKIIG-----GGMPVGAFGGRREVMNALAPTGPV---------------YQA 298 (429)
T ss_dssp TT-BT-TTBTTCHHHHTTCCCSEEEE--EGGGG-----TTSCCEEEEECHHHHTTBTTTSSB---------------CC-
T ss_pred cc-Cc-ccCcchHHHhcCCCCCeeee--ccccc-----CCCCeEEEEECHHHHHHhccCCCc---------------ccc
Confidence 84 22 111111 123588755 48884 457788999998877655321000 000
Q ss_pred CcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCccc----
Q 001989 844 AAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGLKN---- 914 (985)
Q Consensus 844 s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~~~---- 914 (985)
+++.+++..++++.+.+..+..+.+ .++..++.++++++|++. +.+. ..+ .+. + +.+.+..-..
T Consensus 299 ~t~~~~~~~~aaa~aal~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~-~--~~~~~~~~~~~~~~ 371 (429)
T 4e77_A 299 GTLSGNPIAMAAGFACLTEISQVGV---YETLTELTDSLATGLRHAAKEENIPLVVNH-VGG-M--FGLFFTNADTVTCY 371 (429)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTSTTH---HHHHHHHHHHHHHHHHHHHHHTTCCCEEEE-ETT-E--EEEECCSSSCCCSH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHhCCCceEEEE-eee-E--EEEEEccCcccccc
Confidence 1112244555556666776644433 445666777777777641 2221 111 011 1 2344431000
Q ss_pred -----cCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 915 -----TAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 915 -----~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
.......++.+.|.++||.+..... ..++ ++..+|+|||++ ++++|++++++
T Consensus 372 ~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~---~~~~--~~~~~t~e~i~~--~l~~l~~~l~~ 428 (429)
T 4e77_A 372 QDVMNCDVERFKRFFHLMLEEGVYLAPSAF---EAGF--MSLAHSNEDIQK--TVNAARRCFAK 428 (429)
T ss_dssp HHHHTSCHHHHHHHHHHHHHTTEECCSSTT---SCEE--CCTTCCHHHHHH--HHHHHHHHHTT
T ss_pred cccccccHHHHHHHHHHHHHCCeEEeecCC---CCEE--EeccCCHHHHHH--HHHHHHHHHHh
Confidence 0001136889999999998865432 2344 467899999999 77888887754
No 271
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.71 E-value=2.4e-15 Score=174.63 Aligned_cols=325 Identities=12% Similarity=0.045 Sum_probs=203.7
Q ss_pred cCCCCCCCCCcHHHHHHHHhCC--ccccccCCChhhHhhhHHHHHHHHHHHHHHhcC------CCCcceeeccchHHHHH
Q 001989 171 IGMGYYNTHVPPVILRNIMENP--AWYTQYTPYQAEIAQGRLESLLNFQTMIADLTG------LPMSNASLLDEGTAAAE 242 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~--~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g------~~~~~~sl~~~~ta~~e 242 (985)
++.|.++...|+.+.+++.+.- .++..|.+.+ | +.++++.+|++++ .++.++.+++|+|.+++
T Consensus 49 l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~-----g----~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~ 119 (437)
T 3g0t_A 49 MEMGVPGLPAPQIGIETEIQKLREGVASIYPNLD-----G----LPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCF 119 (437)
T ss_dssp CCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCTT-----C----CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred ccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCCC-----C----hHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHH
Confidence 3455556556666654443211 2224454422 1 1345667777776 56778999999998888
Q ss_pred HHHHHhhhhcCCCC--EEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---------hhhhc-c-CCCEeEEEEEcC-CC
Q 001989 243 AMAMCNNIQKGKKK--TFIIASNCHPQTIDICITRADGFDIKVVVSDL---------KDIDY-K-SGDVCGVLVQYP-GT 308 (985)
Q Consensus 243 a~~~a~~~~~~~g~--~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---------~~l~~-l-~~~t~~V~v~~p-n~ 308 (985)
+++.++.. .++|| +|+++...|+++...++. .|++++.++. ++|++ + ++++++|++.+| |.
T Consensus 120 ~~~~~l~~-~~~gd~~~Vl~~~p~~~~~~~~~~~----~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~np 194 (437)
T 3g0t_A 120 VSFLVANR-THKNREYGTLFIDPGFNLNKLQCRI----LGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNP 194 (437)
T ss_dssp HHHHHHTT-SCTTCSCCEEEEESCCHHHHHHHHH----HTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTT
T ss_pred HHHHHHhc-CCCCCccEEEEeCCCcHhHHHHHHH----cCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCC
Confidence 77765521 03789 999999999999888764 3666666544 34555 6 778999999998 77
Q ss_pred Ceeecc---HHHHHHHHHhCCcEEEEEecCccccCC-------------CCC-CcccceEEEecC-ccccccCCCCCCcE
Q 001989 309 EGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL-------------KPP-GELGADIVVGSA-QRFGVPMGYGGPHA 370 (985)
Q Consensus 309 ~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l-------------~~~-~~~GaDi~v~s~-k~lg~P~~~GGP~~ 370 (985)
+|.+.+ +++|+++|+++|+++++|. ..+.... ... ...+.+++++|. |.++.| |..+
T Consensus 195 tG~~~~~~~l~~i~~~a~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~ 269 (437)
T 3g0t_A 195 TWQCMTDEELRIIGELATKHDVIVIEDL-AYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYA----GQRI 269 (437)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEEC-TTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCG----GGCC
T ss_pred CCCcCCHHHHHHHHHHHHHCCcEEEEEc-chhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCc----ccee
Confidence 998875 7889999999999999953 3332111 111 136778999997 777532 3457
Q ss_pred EEEEEchhhHh-cCCCceeeeeecCCCCcceeeecccccccccccc-cCCCccchhHHHHHHHHHHHHHh--CcchHHHH
Q 001989 371 AFLATSQEYKR-MMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDK-ATSNICTAQALLANMAAMYAVYH--GPEGLKTI 446 (985)
Q Consensus 371 G~l~~~~~~~~-~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~-atsni~t~~~l~a~~aa~~l~~~--g~~Gl~~i 446 (985)
|++++++++++ .++...-+. .+.. +. .+..++.+ .+.+..+.....+..++ +... ....++++
T Consensus 270 G~~~~~~~~~~~~~~~~~~~~----~~~~-~~------~~~~~~~~~~~~~~~~~~~~~a~~~~--l~~~~~~~~~~~~~ 336 (437)
T 3g0t_A 270 GVLMISGKLYEREYPDLEESF----GRLR-FG------EALSSSALYALSSGATHSAQWGMAAM--LKACNDGEYNFRDS 336 (437)
T ss_dssp EEEEECHHHHHCBCGGGHHHH----SCSB-HH------HHHHTTHHHHHHSSSCHHHHHHHHHH--HHHHHTTSCCHHHH
T ss_pred EEEEECHHHhhhhhhcccccc----cccc-hh------HHHHHHHHhhhcCCCCHHHHHHHHHH--HhCcHhHHHHHHHH
Confidence 99999988887 632111000 0000 00 00011111 11111111222222222 2221 11128899
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEc------CC-CCcceEEEecCC--HHHHHHHHHHcCceeeeec------CCeEEEEe
Q 001989 447 AQRVHGLAGTFALGLKKLGTVEVQ------GL-PFFDTVKVKCAD--AHAIASAAYKIEMNLRVVD------SNTVTASF 511 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~~~------~~-~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~~------~~~lris~ 511 (985)
.++..++.+++.+.|+++| +++. .+ ....-+.+..++ ..++.++|.++||.+.... ++.+|+|+
T Consensus 337 ~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~iRis~ 415 (437)
T 3g0t_A 337 VIEYGRKARIMKKMFLDNG-FNIVYDKDGNEPLADGFYFTVGYKGMDSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICT 415 (437)
T ss_dssp HHHHHHHHHHHHHHHHTTT-EEESSCEETTEECCSSSEEEEEETTCCHHHHHHHHHHTTEECEESTTTTCCCTTCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcC-CEEeccccCCCCCceeEEEEEecCCCCHHHHHHHHHHcCeEEeeccccCCCCCCEEEEEE
Confidence 9999999999999999996 8887 12 112223445443 8899999999999886542 27799999
Q ss_pred ccCCCHHHHHHHHHHHhC
Q 001989 512 DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 512 t~~~t~edId~li~aL~~ 529 (985)
+ ..|++||++++++|.+
T Consensus 416 ~-~~~~e~i~~~~~~l~~ 432 (437)
T 3g0t_A 416 S-LLPESQFPDLEKRLQM 432 (437)
T ss_dssp S-SSCGGGHHHHHHHHHH
T ss_pred e-cCCHHHHHHHHHHHHH
Confidence 9 4499999999999873
No 272
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.71 E-value=9.1e-16 Score=176.91 Aligned_cols=273 Identities=14% Similarity=0.092 Sum_probs=182.8
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---h
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---K 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~ 289 (985)
..++++.+|+++|.+ ...++.+|++++.+++. + . ++||+|++++..|+++...+...++..|++++.++. +
T Consensus 69 ~~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~-l-~--~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~ 142 (403)
T 3cog_A 69 RNCLEKAVAALDGAK--YCLAFASGLAATVTITH-L-L--KAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIK 142 (403)
T ss_dssp HHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHT-T-S--CTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTTSHH
T ss_pred HHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHH-H-h--CCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCCCHH
Confidence 456789999999987 34566666665554443 2 2 388999999999999888887666778999999976 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCC-cEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANG-VKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~g-alliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
++++ ++++|++|++.+| |++|.+.|+++|+++||++| ++++|| +.++.+....|-++|+||++.|. |.|++|
T Consensus 143 ~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD-~~~~~~~~~~~~~~~~div~~S~sK~~~g~--- 218 (403)
T 3cog_A 143 LLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVD-NTFMSPYFQRPLALGADISMYSATKYMNGH--- 218 (403)
T ss_dssp HHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEE-CTTTCTTTCCTTTTTCSEEEEETTTTTTCS---
T ss_pred HHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEE-CCCcccccCCccccCCeEEEEcChhhccCC---
Confidence 5666 7889999999998 78999999999999999999 999995 45555554556678999999998 777543
Q ss_pred CCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHH
Q 001989 366 GGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLK 444 (985)
Q Consensus 366 GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~ 444 (985)
||--+|+++++ +++.+.+.....+ ..++. .++.. .++ ..+.+.+.
T Consensus 219 ~~~~~G~v~~~~~~l~~~l~~~~~~------------------------~g~~~-----~~~~~-~~~----~~~l~~l~ 264 (403)
T 3cog_A 219 SDVVMGLVSVNCESLHNRLRFLQNS------------------------LGAVP-----SPIDC-YLC----NRGLKTLH 264 (403)
T ss_dssp SCCCCEEEEECCHHHHHHHHHHHHH------------------------HCCCC-----CHHHH-HHH----HHHHTTHH
T ss_pred CCCeEEEEEECcHHHHHHHHHHHHh------------------------cCCCC-----CHHHH-HHH----HhhhhHHH
Confidence 11114888885 5665554110000 00011 11111 111 11112344
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeE--------------EcCC---CCcceEEEecCC-HHHHHHHHHHcCceeee-----
Q 001989 445 TIAQRVHGLAGTFALGLKKLGTVE--------------VQGL---PFFDTVKVKCAD-AHAIASAAYKIEMNLRV----- 501 (985)
Q Consensus 445 ~i~~~~~~~a~~l~~~L~~~g~~~--------------~~~~---~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~----- 501 (985)
...++..+++..+.+.|++...++ +..+ .....+.|.+++ ..++.+.|.+.||....
T Consensus 265 ~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~l~~~~i~~~~~s~G~ 344 (403)
T 3cog_A 265 VRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGG 344 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCSS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCCHHHHHHHHHhCCcceEccCCCC
Confidence 455666667777777776652122 1100 113346677665 56677777777884321
Q ss_pred -------------------------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 -------------------------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 -------------------------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.++.+|+|++..+++++|++|.++|..
T Consensus 345 ~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~ 397 (403)
T 3cog_A 345 FESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKA 397 (403)
T ss_dssp SSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred cceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 1147899999999999999999999863
No 273
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.71 E-value=1.8e-16 Score=184.23 Aligned_cols=288 Identities=17% Similarity=0.206 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCc----------
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM---------- 702 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~---------- 702 (985)
..++++.++++++-....++.+||+++++.++++++.+ .++++||+ ...+||.........|.
T Consensus 95 ~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~------~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~ 168 (429)
T 3k28_A 95 ENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGY------TGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDS 168 (429)
T ss_dssp HHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHH------HTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCC
T ss_pred HHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHh------hCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCc
Confidence 45778889998852233567789999998888777654 24566776 56678765443222221
Q ss_pred ---------EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccC----HHHHHHHHHHcCCEEEEEcc
Q 001989 703 ---------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG----IDEICKIIHDNGGQVYMDGA 768 (985)
Q Consensus 703 ---------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d----i~eI~~la~~~galliVD~a 768 (985)
+++.+|.+ |+++|+++++++.+++++|+++.++ +.|.+. + +++|.++|+++|++||+|++
T Consensus 169 ~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~-~~~~~l~~l~~l~~~~~~~li~DEv 242 (429)
T 3k28_A 169 PGVPEGVAKNTITVAYN-----DLESVKYAFEQFGDDIACVIVEPVAGNMGVVP-PQPGFLEGLREVTEQNGALLIFDEV 242 (429)
T ss_dssp TTCCHHHHTTEEEEETT-----CHHHHHHHHHHHGGGEEEEEECSSBCTTSCBC-CCTTHHHHHHHHHHHHTCEEEEECT
T ss_pred CCCCCcccCceeecCCC-----CHHHHHHHHHhCCCCEEEEEEcCCCCCCCccc-CCHHHHHHHHHHHHHcCCEEEEecc
Confidence 23334432 8999999997554577777776543 467775 6 99999999999999999998
Q ss_pred ccccccCCCCCCc--------cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCC
Q 001989 769 NMNAQVGLTSPGY--------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG 840 (985)
Q Consensus 769 ~~~~~~~l~~pg~--------~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~ 840 (985)
|. ++ +.+. ..+|++++| |+|+ +|.++|++++++++.+.+.... + ...+
T Consensus 243 ~~----g~-~~g~~~~~~~~~~~~di~t~s--K~~~-----~G~~iG~~~~~~~~~~~~~~~~-----------~-~~~~ 298 (429)
T 3k28_A 243 MT----GF-RVAYNCGQGYYGVTPDLTCLG--KVIG-----GGLPVGAYGGKAEIMRQVAPSG-----------P-IYQA 298 (429)
T ss_dssp TT----TT-TSSTTHHHHHHTCCCSEEEEC--GGGG-----TTSCCEEEEECHHHHTTBTTTS-----------S-BCCC
T ss_pred cc----cc-ccCcchHHHHhCCCCceehhh--hhhc-----CCCCeEEEEEcHHHHhhhccCC-----------C-cccc
Confidence 83 22 2221 236887654 8884 3578899999988766553210 0 0000
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecCcc--
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGLK-- 913 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~~~-- 913 (985)
+++.+++.+++++.+.+..+. ++..++..+++++++++|++. +... ..+. +.. +.+.+....
T Consensus 299 ---~t~~~~~~a~aaa~aal~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-g~~---~~~~~~~~~~~ 367 (429)
T 3k28_A 299 ---GTLSGNPLAMAAGYETLVQLT----PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRA-GSM---IGIFFTDEPVI 367 (429)
T ss_dssp ---CTTTTCHHHHHHHHHHHHTCC----HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEE-TTE---EEEESSSSCCC
T ss_pred ---CCCCCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEee-ccE---EEEEEecCCcc
Confidence 111224445555566666554 344556777888888888652 2211 1111 111 223332000
Q ss_pred ------ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 914 ------NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 914 ------~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
...+....++.+.|.++|+.+.... .+.+|++ ..+|++|+++ +++.|++++++++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---~~~~r~~--~~~t~e~i~~--~l~~l~~~l~~~~ 428 (429)
T 3k28_A 368 NYDAAKSSNLQFFAAYYREMVEQGVFLPPSQ---FEGLFLS--TVHSDADIEA--TIAAAEIAMSKLK 428 (429)
T ss_dssp SHHHHTTSCHHHHHHHHHHHHHTTEECCSST---TSCBCCC--TTCCHHHHHH--HHHHHHHHHHTCC
T ss_pred cccccccccHHHHHHHHHHHHHCCeEEecCC---CCCEEEE--CCCCHHHHHH--HHHHHHHHHHHHh
Confidence 0000113678899999999886543 2466764 5789999999 8899999887664
No 274
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.70 E-value=4.4e-16 Score=178.16 Aligned_cols=285 Identities=14% Similarity=0.162 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
...++++.+|+++|.+ ++.++.|||.+++.++.+++. ++||+|+++...|+++...++. .|++++.++.
T Consensus 40 ~~~~l~~~la~~~~~~--~~~~~~~gt~al~~~~~~~~~--~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~v~~~~~ 111 (393)
T 1mdo_A 40 KNQELEAAFCRLTGNQ--YAVAVSSATAGMHIALMALGI--GEGDEVITPSMTWVSTLNMIVL----LGANPVMVDVDRD 111 (393)
T ss_dssp HHHHHHHHHHHHHCCS--EEEEESCHHHHHHHHHHHTTC--CTTCEEEEESSSCHHHHHHHHH----TTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHhCCC--cEEEecChHHHHHHHHHHcCC--CCCCEEEeCCCccHhHHHHHHH----CCCEEEEEeccCC
Confidence 4567889999999986 578889999888877766533 3889999999999999888753 5888888764
Q ss_pred ------hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCccc-ceEEEecC---c
Q 001989 289 ------KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELG-ADIVVGSA---Q 357 (985)
Q Consensus 289 ------~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~G-aDi~v~s~---k 357 (985)
++|++ +++++++|++++ ++|.+.|+++|.++|+++|+++++| +..+.|.......+| .|+++.|. |
T Consensus 112 ~~~~d~~~l~~~l~~~~~~v~~~~--~~G~~~~~~~i~~l~~~~~~~li~D-~a~~~g~~~~~~~~~~~d~~~~S~~k~K 188 (393)
T 1mdo_A 112 TLMVTPEHIEAAITPQTKAIIPVH--YAGAPADLDAIYALGERYGIPVIED-AAHATGTSYKGRHIGARGTAIFSFHAIK 188 (393)
T ss_dssp TCCBCHHHHHHHCCTTEEEECCBC--GGGCCCCHHHHHHHHHHHTCCBCEE-CTTCTTCEETTEETTSSSEEEEECCTTS
T ss_pred cCCCCHHHHHHhcCCCceEEEEeC--CCCCcCCHHHHHHHHHHcCCeEEEE-CccccCCeECCeecCCCCeEEEeCCCCC
Confidence 34555 777899998875 6899999999999999999999995 344554322223466 89999996 3
Q ss_pred cccccCCCCCCcEEEEEEc-hhhHhcCCCc-eeeeeecCCCCcceeeeccccccccccc---ccC-CCccchhHHHHHHH
Q 001989 358 RFGVPMGYGGPHAAFLATS-QEYKRMMPGR-IVGVSIDSSGKPALRVAMQTREQHIRRD---KAT-SNICTAQALLANMA 431 (985)
Q Consensus 358 ~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~-~vG~t~d~~g~~~~~l~l~tre~~irre---~at-sni~t~~~l~a~~a 431 (985)
.++ |+.+|++.++ +++.+.+... ..|...+. -.+ | +. ....+.+ .|+ .++ ..+ .+
T Consensus 189 ~l~------~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~-~~~-~---~~--~~~~~~~~~~~g~~~~~---~~~---~~ 249 (393)
T 1mdo_A 189 NIT------CAEGGIVVTDNPQFADKLRSLKFHGLGVDA-WDR-Q---SG--GRAPQAEVLAPGYKYNL---PDL---NA 249 (393)
T ss_dssp SSC------SSSCEEEEESCHHHHHHHHHHTBTTEECC------------------CCEESSCCCBCCC---CHH---HH
T ss_pred ccc------cccceEEEeCCHHHHHHHHHHHhcCCcccc-hhh-h---cc--cccccccccccCccCCC---CHH---HH
Confidence 332 2245788886 6666554211 11211110 000 0 00 0001111 122 111 222 22
Q ss_pred HHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC------CcceEEEecC----C--HHHHHHHHHHcCcee
Q 001989 432 AMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP------FFDTVKVKCA----D--AHAIASAAYKIEMNL 499 (985)
Q Consensus 432 a~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~------~~~~~~~~~~----~--~~~v~~~L~~~GI~~ 499 (985)
++-+.. .++++++.++..++++++++.|++++ +++...+ ....+.+..+ + ..++.+.|.++||.+
T Consensus 250 a~~~~~--l~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v 326 (393)
T 1mdo_A 250 AIALAQ--LQKLDALNARRAAIAAQYHQAMADLP-FQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGT 326 (393)
T ss_dssp HHHHHH--HHTHHHHHHHHHHHHHHHHHHHHTSS-CEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCC
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCCCCCceeEEEEEEecccccccCHHHHHHHHHhCCCCc
Confidence 221111 24578888888999999999999988 8875321 1123555554 2 788999999999977
Q ss_pred eeec-------------------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 500 RVVD-------------------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 500 ~~~~-------------------------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+... ...+|++++..+|++|+++++++|.+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~ 381 (393)
T 1mdo_A 327 GLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQ 381 (393)
T ss_dssp BCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred ccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHH
Confidence 5421 23699999999999999999999974
No 275
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.70 E-value=1.2e-15 Score=176.71 Aligned_cols=300 Identities=12% Similarity=0.098 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHh-C-CCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCCcE-------
Q 001989 634 FNNLGEWLCTIT-G-FDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGMK------- 703 (985)
Q Consensus 634 ~~e~~~~la~l~-G-~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G~~------- 703 (985)
..++++.+++++ | .+...++.++|++|++.++.+++.+. .++ +||+ ...+|+.........|.+
T Consensus 86 ~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~-----~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~ 159 (426)
T 1sff_A 86 YLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT-----KRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGM 159 (426)
T ss_dssp HHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH-----TCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTS
T ss_pred HHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhh-----CCC-eEEEECCCcCCCchHhhhhcCCcccccccc
Confidence 457888999999 5 21334666788888876666444442 234 6776 456777776666655543
Q ss_pred ------EEEEcCCC-----CCCCCHHHHHHHHHhc--CCCEEEEEEEc-CCCccccccC----HHHHHHHHHHcCCEEEE
Q 001989 704 ------IVSVGTDA-----KGNINIEELRKAAEAN--RDNLSTLMVTY-PSTHGVYEEG----IDEICKIIHDNGGQVYM 765 (985)
Q Consensus 704 ------vv~v~~d~-----~g~iD~e~L~~~i~~~--~~~t~~Vvv~~-pn~~G~i~~d----i~eI~~la~~~galliV 765 (985)
++.+|++. ++.+|+++|++++++. .+++++|+++. ++.+|.+. + +++|.++|+++|+++|+
T Consensus 160 ~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~-~~~~~l~~l~~l~~~~~~~li~ 238 (426)
T 1sff_A 160 GLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYA-SSPAFMQRLRALCDEHGIMLIA 238 (426)
T ss_dssp CCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCB-CCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCccc-CCHHHHHHHHHHHHHcCCEEEE
Confidence 77788753 1346899999999731 14677777743 44489665 6 99999999999999999
Q ss_pred EccccccccCCCCC---C--ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCC
Q 001989 766 DGANMNAQVGLTSP---G--YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG 840 (985)
Q Consensus 766 D~a~~~~~~~l~~p---g--~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~ 840 (985)
|+++. +++-.... . ...+|+++ ++|+|+ +|.++|++++++++.+.+..... ..
T Consensus 239 De~~~-~~~~~g~~~~~~~~~~~~di~s--~sK~~~-----~GlriG~~~~~~~~~~~l~~~~~------------~~-- 296 (426)
T 1sff_A 239 DEVQS-GAGRTGTLFAMEQMGVAPDLTT--FAKSIA-----GGFPLAGVTGRAEVMDAVAPGGL------------GG-- 296 (426)
T ss_dssp ECTTT-TTTTTSSSSGGGGTTSCCSEEE--ECGGGG-----TSSCCEEEEEEHHHHTTSCTTSB------------CC--
T ss_pred echhh-ccCcccchhhhhhcCCCCCEEE--Eccccc-----CCCceEEEEEcHHHHhhhccCCc------------Cc--
Confidence 99985 33211111 1 12378774 469985 24568999999877665532110 01
Q ss_pred CCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-c--CCee-ecCCCCceeeEEEEEecCccc--
Q 001989 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-H--YPIL-FRGVNGTVAHEFIVDLRGLKN-- 914 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g--~~l~-~~~~~~~~~~~~iv~~~~~~~-- 914 (985)
..+. ++....++.+.+..+..+. ..++..+++++++++|++ + ++.. ...+.+. .+.+++...+.
T Consensus 297 ~~~~----~~~~~~a~~aal~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~ 366 (426)
T 1sff_A 297 TYAG----NPIACVAALEVLKVFEQEN---LLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGA---MIAIELFEDGDHN 366 (426)
T ss_dssp SSSS----CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETT---EEEEEEBGGGCTT
T ss_pred CCCC----CHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEE---EEEEEEecCcccc
Confidence 1111 2233344445555554433 345667778888888875 2 3321 1111122 13445421000
Q ss_pred -cCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 915 -TAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 915 -~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
..+.+..++.++|.++||.+..... ..+.+||+++..++++||++ +++.|++++++++
T Consensus 367 ~~~~~~~~~l~~~l~~~gi~v~~~~~-~~~~iRi~~~~~~~~~~i~~--~~~~l~~~l~~~~ 425 (426)
T 1sff_A 367 KPDAKLTAEIVARARDKGLILLSCGP-YYNVLRILVPLTIEDAQIRQ--GLEIISQCFDEAK 425 (426)
T ss_dssp SBCHHHHHHHHHHHHHTTEECEEEST-TSCEEEECCCTTCCHHHHHH--HHHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHHHHCCcEEecCCC-CCCEEEEECCccCCHHHHHH--HHHHHHHHHHHHh
Confidence 0112467899999999998754321 14899999999999999999 8889998887653
No 276
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.70 E-value=3.8e-15 Score=169.98 Aligned_cols=275 Identities=13% Similarity=0.039 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHhcC--CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-
Q 001989 212 SLLNFQTMIADLTG--LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~- 288 (985)
...++.+.+++.+| .++.++.+++|+|.++++++.++ . ++||+|+++...|+++...++. .|.+++.++.
T Consensus 67 l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l-~--~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~~~~~ 139 (391)
T 3dzz_A 67 YYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQF-T--SPGDQILVQEPVYNMFYSVIEG----NGRRVISSDLI 139 (391)
T ss_dssp HHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHH-S--CTTCEEEECSSCCHHHHHHHHH----TTCEEEECCCE
T ss_pred HHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHh-C--CCCCeEEECCCCcHHHHHHHHH----cCCEEEEeeee
Confidence 34455677888888 56778999999998888777665 2 3889999999999998888753 5778777654
Q ss_pred ----------hhhhc-cC-CCEeEEEEEcC-CCCeee---ccHHHHHHHHHhCCcEEEEEecCccccCC-----CCCCcc
Q 001989 289 ----------KDIDY-KS-GDVCGVLVQYP-GTEGEV---LDYGDFIKNAHANGVKVVMATDLLALTIL-----KPPGEL 347 (985)
Q Consensus 289 ----------~~l~~-l~-~~t~~V~v~~p-n~~G~v---~di~~I~~~a~~~galliV~a~~~~lg~l-----~~~~~~ 347 (985)
++|++ +. +++++|++.+| |.+|.+ +++++|+++|+++|+++++|. .++.... .+...+
T Consensus 140 ~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~g~~~~~~~~~ 218 (391)
T 3dzz_A 140 YENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDE-IHGDLVLTDEDITPAFTV 218 (391)
T ss_dssp EETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEEC-TTTTCBCSSCCCCCGGGS
T ss_pred ecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEec-ccccccCCCCCceehhhc
Confidence 34555 65 78999999998 789999 789999999999999999953 3332111 111233
Q ss_pred c---ce--EEEecC-ccccccCCCCCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCc
Q 001989 348 G---AD--IVVGSA-QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNI 420 (985)
Q Consensus 348 G---aD--i~v~s~-k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni 420 (985)
+ .| +++.|. |.++. +|..+|+++++ +++.+.+.... ++ ....+.|.
T Consensus 219 ~~~~~d~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~~---------------------~~--~~~~~~~~ 271 (391)
T 3dzz_A 219 DWDAKNWVVSLISPSKTFNL----AALHAACAIIPNPDLRARAEESF---------------------FL--AGIGEPNL 271 (391)
T ss_dssp CTTTGGGEEEEECSHHHHTC----TTTCCEEEECCSHHHHHHHHHHH---------------------HH--HTCSSCCT
T ss_pred CccccCcEEEEEeChhhccc----cchhheEEEECCHHHHHHHHHHH---------------------Hh--hccCCCCH
Confidence 3 56 889998 87753 34557899887 77766541000 00 00011121
Q ss_pred cchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc-CCCeEEcCCCCcceEEEecC----CHHHHHHHHH-H
Q 001989 421 CTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQGLPFFDTVKVKCA----DAHAIASAAY-K 494 (985)
Q Consensus 421 ~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~----~~~~v~~~L~-~ 494 (985)
....+..+++ .. +.+.++++.++..++.+++.+.|++ ++++++..+.....+.+.++ ...++.++|. +
T Consensus 272 ---~~~~a~~~~l--~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 345 (391)
T 3dzz_A 272 ---LAIPAAIAAY--EE-GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYLAWVDISALGMNAEDFCKYLREK 345 (391)
T ss_dssp ---THHHHHHHHH--HH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCBSSEEEEECGGGCSCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHH--hc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCceEEEEEehhhcCCCHHHHHHHHHHh
Confidence 2222333332 22 4556888999999999999999998 64488764321111224433 2889999995 8
Q ss_pred cCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 495 IEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 495 ~GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+||.+... .++.+|++++ ++++||+++++.|.+
T Consensus 346 ~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~ 384 (391)
T 3dzz_A 346 TGLIISAGNGYRGNGHEFVRINLA--CPKELVIDGMQRLKQ 384 (391)
T ss_dssp HCEECEESGGGCTTGGGEEEEECC--SCHHHHHHHHHHHHH
T ss_pred CCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHH
Confidence 89988642 1378999998 699999999998874
No 277
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.70 E-value=1.1e-16 Score=180.81 Aligned_cols=287 Identities=10% Similarity=0.071 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCC--EEEEcCCCCcccHH---HHHHCCcEEEEEc
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRN--VCIIPVSAHGTNPA---TAAMCGMKIVSVG 708 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~--~IIv~~~~Hg~~~~---~a~~~G~~vv~v~ 708 (985)
..++++++++++|.+.. +++++|+++++.++.++.. +++ +|+++...|..... .+...|++++.++
T Consensus 49 ~~~l~~~la~~~~~~~~-i~~~~G~~a~~~al~~~~~--------~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~ 119 (357)
T 3lws_A 49 IEPFEQKFADVLGMDDA-VFFPSGTMAQQVALRIWSD--------ETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVG 119 (357)
T ss_dssp HHHHHHHHHHHHTCSEE-EEESCHHHHHHHHHHHHHH--------HHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEECS
T ss_pred HHHHHHHHHHHhCCCcE-EEecCcHHHHHHHHHHHhh--------cCCCcEEEecccceeeeeccchhhhccCcEEEEec
Confidence 45788999999998764 4557888877655554432 233 78887766543222 3456799998888
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cc-cccc--cCHHHHHHHHHHcCCEEEEEccccc-cccCCCCC-C--
Q 001989 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYPS-TH-GVYE--EGIDEICKIIHDNGGQVYMDGANMN-AQVGLTSP-G-- 780 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~-G~i~--~di~eI~~la~~~galliVD~a~~~-~~~~l~~p-g-- 780 (985)
. +++.+|+++|+++ .++++|++++|+ ++ |.+. .++++|.++|+++|++||+|+++.. .......+ .
T Consensus 120 ~-~~~~~d~~~l~~~-----~~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~ 193 (357)
T 3lws_A 120 A-ADRLMTLDEIKAL-----PDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEI 193 (357)
T ss_dssp C-TTSCCCHHHHHTC-----CSCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHH
T ss_pred C-CCCCcCHHHHhcC-----cCcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHH
Confidence 5 5678999999876 238899999995 55 8765 1599999999999999999998741 11111111 1
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
..++|+++.++||+|+ ||++|+++.++++.+.+.... .. ..++..+. .. .++++.+.+
T Consensus 194 ~~~~d~~~~s~sK~~~------~~~gg~~~~~~~~~~~~~~~~-~~-----------~~~~~~~~---~~-~~~~~~~~l 251 (357)
T 3lws_A 194 AGLFDSIYISFYKGLG------GIAGAILAGPAAFCQTARIWK-RR-----------YGGDLISL---YP-YIVSADYYY 251 (357)
T ss_dssp HTTSSEEEEESSSTTC------CSSCEEEEECHHHHHHHHHHH-HH-----------TTCCCSCC---HH-HHHHHHHHH
T ss_pred HhcCCEEEEeccccCC------CCceEEEEcCHHHHHHHHHHH-HH-----------hcCCcccc---hH-HHHHHHHHH
Confidence 1357999999999984 454489888876654432100 00 00111110 11 112222333
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeee-cCCCCceeeEEEEEecCccccCC-CCHHHHHHHHHHCCCccCCCC
Q 001989 861 AMMGSKGLTEASKIAILNANYMAKRLEKHYPILF-RGVNGTVAHEFIVDLRGLKNTAG-IEPEDVAKRLMDYGFHGPTMS 938 (985)
Q Consensus 861 ~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~-~~~~~~~~~~~iv~~~~~~~~~g-~~~~~v~~~L~~~Gi~~~~~~ 938 (985)
.. ..+..++..++++++.+.|++..++.+ ..+.... -+.++++. .+ .+..++.+.|.++||.+....
T Consensus 252 ~~-----~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~l~~~Gi~v~~g~ 320 (357)
T 3lws_A 252 EL-----RKDRMGQYYEQAKQLAEQFNALPGVHTTPEVPVSN--MFHLHFDG----QAADISPKLEQVQEETGLGFVGYL 320 (357)
T ss_dssp HH-----HTTCHHHHHHHHHHHHHHHHTSTTEEEESSSCSSS--EEEEEEES----CHHHHHHHHHHHHHHHCEESCSCC
T ss_pred HH-----HHHHHHHHHHHHHHHHHHHHhCCCCeeccCCCcce--EEEEEecC----ChHHHHHHHHHHHHhcCeEEeccc
Confidence 32 122233456778899999987333322 1221222 23455541 00 125688899999999876543
Q ss_pred CCCC--CEEEEeccC---CCCHHHHHHHHccCChhHH
Q 001989 939 WPVP--GTLMIEPTE---SESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 939 ~p~~--~~lris~t~---~~t~eeId~~~~~~~l~~~ 970 (985)
++.+ ..+|+++.. ..+.+++++ .++.|.+.
T Consensus 321 ~~~~~~~~~r~~i~~~~~~~~~~~l~~--al~~l~~a 355 (357)
T 3lws_A 321 VDKDGYCSTEISVGDAYGELDQQTRDA--GFARLRQA 355 (357)
T ss_dssp EECSSEEEEEEEBCTTGGGSCHHHHHH--HHHHHHHH
T ss_pred ccCCCceEEEEEecchhhhcCHHHHHH--HHHHHHHh
Confidence 2213 378998874 368888888 55555544
No 278
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.70 E-value=1.9e-16 Score=185.02 Aligned_cols=296 Identities=12% Similarity=0.058 Sum_probs=182.3
Q ss_pred HHHHHHHHHHh----CCCcccee-cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE------
Q 001989 635 NNLGEWLCTIT----GFDSFSLQ-PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK------ 703 (985)
Q Consensus 635 ~e~~~~la~l~----G~~~~~~~-~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~------ 703 (985)
.++++.+++++ +.+...+. .+++++++..+ . .+. .++|+|+++++.|..+...++..|.+
T Consensus 114 ~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~-~---~l~-----~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~ 184 (449)
T 3qgu_A 114 GALREAVASTFYGHAGRAADEIFISDGSKCDIARI-Q---MMF-----GSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGT 184 (449)
T ss_dssp HHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-H---HHH-----CSSSCEEEEESCCTHHHHHHHHHTCSCCBCSS
T ss_pred HHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHH-H---HHh-----CCCCEEEEcCCCChhHHHHHHHcCCccccccc
Confidence 35666777776 55554544 44555554322 2 222 36789999988888887778888988
Q ss_pred ----EEEEcCCCCC--CCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEccccccc-
Q 001989 704 ----IVSVGTDAKG--NINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ- 773 (985)
Q Consensus 704 ----vv~v~~d~~g--~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~~- 773 (985)
++.+|+++++ ..|+++ . +++++|++++|+ ++|.+. .++++|+++|+++|+++++|++|....
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~ 256 (449)
T 3qgu_A 185 GFDGIEYMVCNPDNHFFPDLSK-------A-KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYIS 256 (449)
T ss_dssp SBTTEEEEECCGGGTTCCCGGG-------C-CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCC
T ss_pred ccceeEEEecccccCCcCChhH-------c-CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhc
Confidence 9999987543 344321 1 578899999984 699885 148899999999999999999985211
Q ss_pred cCC--CC----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcch
Q 001989 774 VGL--TS----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 774 ~~l--~~----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~ 847 (985)
.+- .. +...+.++++.|++|+|++ +|.++|++++++++.+.....+..... ......+.+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~----- 323 (449)
T 3qgu_A 257 NPDCPKTIYEIPGADEVAIETCSFSKYAGF----TGVRLGWTVVPKALKYANGEPVHADWN----RVMTTCFNGA----- 323 (449)
T ss_dssp CTTSCSSGGGSTTGGGTEEEEEECSGGGTC----TTCCCEEEECCTTCBCTTSCBHHHHHH----HHHHHSCCCC-----
T ss_pred CCCCCCCHhhccCCCCcEEEEecchhhcCC----ccceeEEEecCHHHHhhhhhhHHHHHH----HHhhcccCCC-----
Confidence 110 01 1123467889999999854 468899999988776530000000000 0000001111
Q ss_pred hhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHH
Q 001989 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~ 926 (985)
+.....++.+++...+.+.+.+..++..++++++.+.|++ ++.+.. +.+..+ +.+.++ +.+..+++++
T Consensus 324 -~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~--~~~~~~------~~~~~~~~~~ 392 (449)
T 3qgu_A 324 -SNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMGFSVYG--GDDAPY--IWVGFP------GKPSWDVFAE 392 (449)
T ss_dssp -CHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE--SSSSSE--EEEECT------TSCHHHHHHH
T ss_pred -CHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeeC--CCCeeE--EEEECC------CCCHHHHHHH
Confidence 1122222333333323345667777788899999999987 555532 222222 345543 4578899988
Q ss_pred HHHC-CCccCCC-CC--CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 927 LMDY-GFHGPTM-SW--PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 927 L~~~-Gi~~~~~-~~--p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
|.++ ||.+... .+ ...+++||++. .+++||++ +++.|++++++-+
T Consensus 393 l~~~~gI~v~pg~~f~~~~~~~iRis~~--~~~e~i~~--~l~~l~~~~~~~~ 441 (449)
T 3qgu_A 393 ILERCNIVTTPGSGYGPAGEGFVRASAF--GSRENILE--AVRRFKEAYGKRN 441 (449)
T ss_dssp HHHHHCEECEEGGGGCGGGTTEEEEECC--SCHHHHHH--HHHHHHHHHC---
T ss_pred HHHHCCEEEecchHhCCCCCCeEEEEec--CCHHHHHH--HHHHHHHHHHhcC
Confidence 8876 9986432 12 12589999954 59999999 7788888876544
No 279
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.70 E-value=6.8e-16 Score=179.27 Aligned_cols=312 Identities=16% Similarity=0.174 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHHhCCCcc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCcccHHHHHHCCc-------
Q 001989 632 EMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPATAAMCGM------- 702 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~-~~Hg~~~~~a~~~G~------- 702 (985)
+...+++++++++++.+.. .++.++|+++++.++++++.+...+|..++++||+.+ .+|+.........+.
T Consensus 72 ~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~ 151 (430)
T 3i4j_A 72 DVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELY 151 (430)
T ss_dssp HHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC---------------------
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCcccccccc
Confidence 3456788899999976543 4667889999988888887766566644577888744 556544333222221
Q ss_pred -------EEEEEcCCCC---CCCCHHHHHHHHHhcC-CCEEEEEEEcC-C-CccccccC----HHHHHHHHHHcCCEEEE
Q 001989 703 -------KIVSVGTDAK---GNINIEELRKAAEANR-DNLSTLMVTYP-S-THGVYEEG----IDEICKIIHDNGGQVYM 765 (985)
Q Consensus 703 -------~vv~v~~d~~---g~iD~e~L~~~i~~~~-~~t~~Vvv~~p-n-~~G~i~~d----i~eI~~la~~~galliV 765 (985)
++..+|.+.. +..|+++|+++|++.. +++++|+++.+ + +.|.+. + +++|.++|+++|+++|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~-~~~~~l~~l~~l~~~~~~~li~ 230 (430)
T 3i4j_A 152 TPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALA-PAPGYYERVRDICDEAGIIFIA 230 (430)
T ss_dssp ----CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCC-CCTTHHHHHHHHHHHHTCEEEE
T ss_pred CCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCccc-CCHHHHHHHHHHHHHcCCEEEE
Confidence 3334454322 2347799999997533 35666665443 3 566655 4 89999999999999999
Q ss_pred EccccccccCCCCC---C---ccCCcEEEeCCcccccccCCCCC-CceEEEEEcccccCcCCCCccccCCCCCCCCCCCC
Q 001989 766 DGANMNAQVGLTSP---G---YIGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQP 838 (985)
Q Consensus 766 D~a~~~~~~~l~~p---g---~~g~Di~~~s~hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~ 838 (985)
|+++. +++..... . ....|++++| |+|+ +| .++|++++++++.+.+.... +. .. .
T Consensus 231 DEv~~-~~~~~g~~~~~~~~~~~~~di~t~s--K~l~-----~G~~r~G~~~~~~~i~~~~~~~~-~~----~~-----~ 292 (430)
T 3i4j_A 231 DEVMS-GMGRCGSPLALSRWSGVTPDIAVLG--KGLA-----AGYAPLAGLLAAPQVYETVMGGS-GA----FM-----H 292 (430)
T ss_dssp ECTTT-TTTTTSSSSGGGGTTTCCCSEEEEC--GGGT-----TTSSCCEEEEECHHHHHHHHHTT-CB----CC-----C
T ss_pred echhh-CCCcccchhhhhhhcCCCCcEEEEc--cccc-----CCccccEEEEECHHHHHHHhccC-Cc----cc-----c
Confidence 99874 22111111 1 2236888764 8874 36 77899999887765442110 00 00 0
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc---cCC-eeecCCCCceeeEEEEEecCccc
Q 001989 839 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---HYP-ILFRGVNGTVAHEFIVDLRGLKN 914 (985)
Q Consensus 839 ~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~---g~~-l~~~~~~~~~~~~~iv~~~~~~~ 914 (985)
... +.++++.++++.+.|..+..+.+ .++..++.++++++|++ .+. +....+.+.+ +.+.+.....
T Consensus 293 ~~t----~~~~~~~~aaa~aal~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~ 362 (430)
T 3i4j_A 293 GFT----YAGHPVSVAAGLSVLDIVEREDL---TGAAKERGAQLLAGLQALQARFPQMMQVRGTGLL---LGVVLGDLAT 362 (430)
T ss_dssp CCT----TTTCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTE---EEEEEC----
T ss_pred cCC----CCCCHHHHHHHHHHHHHHHcccH---HHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEE---EEEEeccccc
Confidence 001 11234445555666666544443 34555666777776654 122 2111111222 2233321000
Q ss_pred -cC---CCCHHHHHHHHHHCCCccCCCCCC----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 915 -TA---GIEPEDVAKRLMDYGFHGPTMSWP----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 915 -~~---g~~~~~v~~~L~~~Gi~~~~~~~p----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
.. .....++.+.|.++|+.+....++ ..+.+||+++...|+|||++ +++.|+++++++
T Consensus 363 ~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~--~l~~l~~~l~~~ 428 (430)
T 3i4j_A 363 GQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDG--LLALLAGALEDV 428 (430)
T ss_dssp --------CHHHHHHHHHHTTEECC-----------CEEEECCCTTCCHHHHHH--HHHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEECCCCCCHHHHHH--HHHHHHHHHHHh
Confidence 00 112467999999999988654211 24789999999999999999 889999888754
No 280
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.70 E-value=3.1e-16 Score=181.78 Aligned_cols=300 Identities=11% Similarity=0.080 Sum_probs=184.0
Q ss_pred HHHHHHHHHHhCCCccceecCcH-HHHHHHHHHHHHHHHHhc---CCC-----CCCEEEEcCCCCcccHHHHHHCCcEEE
Q 001989 635 NNLGEWLCTITGFDSFSLQPNAG-AAGEYAGLMVIRAYHKAR---GDH-----HRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 635 ~e~~~~la~l~G~~~~~~~~~sG-a~a~~a~l~air~~~~~~---g~~-----~~~~IIv~~~~Hg~~~~~a~~~G~~vv 705 (985)
.++++.+++++|.+...+..++| +++.. ..++++.+. .. |.. .+++|+++++.|..+...++..|++++
T Consensus 79 ~~lr~~ia~~~~~~~~~i~~t~G~~~al~-l~~~~~~l~-~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~ 156 (422)
T 3d6k_A 79 ADIRELWAEALGLPADLVVAQDGSSLNIM-FDLISWSYT-WGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMI 156 (422)
T ss_dssp HHHHHHHHHHHTCCGGGEEECSSCHHHHH-HHHHHHHHH-HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHhCCChhHEEEecchHHHHH-HHHHHHHhc-CcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEE
Confidence 36778888889988766555444 44431 012222221 11 100 134799988877777677788899999
Q ss_pred EEcCCCCCCCCHHHHHHHHHhcCCCEEEEE-EEcC-CCccccccCHH---HHHHHHH-HcCCEEEEEccccc-cccC---
Q 001989 706 SVGTDAKGNINIEELRKAAEANRDNLSTLM-VTYP-STHGVYEEGID---EICKIIH-DNGGQVYMDGANMN-AQVG--- 775 (985)
Q Consensus 706 ~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vv-v~~p-n~~G~i~~di~---eI~~la~-~~galliVD~a~~~-~~~~--- 775 (985)
.+|++++| +|+++|++++++ .++++|+ +.+| |++|.+. +.+ +|.++|+ ++|+++++|+++.. .+..
T Consensus 157 ~v~~~~~g-~d~~~l~~~l~~--~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~ 232 (422)
T 3d6k_A 157 NVPMTDEG-PDMGVVRELVKD--PQVKGMWTVPVFGNPTGVTF-SEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFP 232 (422)
T ss_dssp EEEEETTE-ECHHHHHHHHTS--TTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCC
T ss_pred ecCCCCCC-CCHHHHHHHHhc--CCCeEEEEcCCCCCCCCCCC-CHHHHHHHHHHHhhccCCEEEEECCccccccCCCCC
Confidence 99997766 999999999972 3788888 5677 4699987 555 7888888 89999999999852 1211
Q ss_pred -CCC-------CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcch
Q 001989 776 -LTS-------PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 776 -l~~-------pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~ 847 (985)
... ++..+.++++.|++|+ +. .|.++|++++++++.+.+.... . ..+.+. +
T Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~----~GlriG~~~~~~~l~~~l~~~~-~-----------~~~~~~--~-- 291 (422)
T 3d6k_A 233 IVHNVIEFAQAAGNPNRFWFMSSTSKI-TH----AGSGVSFFASSKENIEWYASHA-N-----------VRGIGP--N-- 291 (422)
T ss_dssp CCCCHHHHHHHTTCTTCEEEEEESTTT-SC----TTSSCEEEECCHHHHHHHHHHH-H-----------HHCSCC--C--
T ss_pred CCcChhhHhhccCCCCcEEEEcChhhh-cC----cccceEEEEeCHHHHHHHHHHH-H-----------hhcCCC--C--
Confidence 001 1123457888899997 43 3677999999877655442110 0 000111 1
Q ss_pred hhhHHHHHHHHHHHHhc--HHHHHHHHHHHHHHHHHHHHHhhcc---CC-eeecCCCCceeeEEEEEecCccccCCCCHH
Q 001989 848 GSALILPISYTYIAMMG--SKGLTEASKIAILNANYMAKRLEKH---YP-ILFRGVNGTVAHEFIVDLRGLKNTAGIEPE 921 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg--~eGl~~~~~~~~~~a~~l~~~L~~g---~~-l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~ 921 (985)
.....++.+++...+ .+-+++..+...++.+++.+.|.+. .+ +.+..+.+..+ +.++++ +.+..
T Consensus 292 --~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~--~~~~~~------~~~~~ 361 (422)
T 3d6k_A 292 --KLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYF--ISVDVV------PGTAS 361 (422)
T ss_dssp --HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSC--EEEEES------TTCHH
T ss_pred --HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceE--EEEECC------CCCHH
Confidence 111222223332111 1223344444555667777777541 11 22222222232 345654 12577
Q ss_pred HHHHHHHHCCCccCCC--CCC-----CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 922 DVAKRLMDYGFHGPTM--SWP-----VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 922 ~v~~~L~~~Gi~~~~~--~~p-----~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
++.+.|.++||.+... .++ ..+++||+++. .+++|+++ +++.|+++++++
T Consensus 362 ~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~-~~~e~i~~--~~~~l~~~l~~~ 418 (422)
T 3d6k_A 362 RVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL-PPVAELEV--AMDGFATCVLMA 418 (422)
T ss_dssp HHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS-SCHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCC-CCHHHHHH--HHHHHHHHHHHH
Confidence 8889999999997542 232 24799999988 89999999 788888888765
No 281
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.70 E-value=1.7e-15 Score=172.07 Aligned_cols=271 Identities=12% Similarity=0.093 Sum_probs=181.3
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-hh--cCCC-CEEEEcCCCChhHHHHHHHhhcC----CCeE--
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQ--KGKK-KTFIIASNCHPQTIDICITRADG----FDIK-- 282 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~--~~~g-~~Vlv~~~~H~s~~~~~~~~a~~----~gi~-- 282 (985)
..++++.+|+++|++ .++.+++|+|.++++++.+.+ +. .++| |+|++++..|+.+...+...... .|..
T Consensus 72 ~~~l~~~la~~~g~~-~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 150 (375)
T 2eh6_A 72 QEELAHKLVKHFWTE-GKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPL 150 (375)
T ss_dssp HHHHHHHHHHTSSSC-EEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSC
T ss_pred HHHHHHHHHhhcCCC-CeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCC
Confidence 346789999999984 678899999988887765421 21 0256 89999987765544433322110 1222
Q ss_pred ---EEEe---Cchhhhc-cCCCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecCcc-ccCCCC---CCc
Q 001989 283 ---VVVS---DLKDIDY-KSGDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLA-LTILKP---PGE 346 (985)
Q Consensus 283 ---v~~v---~~~~l~~-l~~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~~-lg~l~~---~~~ 346 (985)
+..+ |+++|++ +++++++|++++| |.+|.+.| +++|.++|+++|+++++|. ..+ ++.... ...
T Consensus 151 ~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~ 229 (375)
T 2eh6_A 151 VPGFSYAKLNDIDSVYKLLDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDE-VQTGIGRTGEFYAYQH 229 (375)
T ss_dssp CSSEEEECTTCHHHHHTTCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEEC-TTTTTTTTSSSSGGGG
T ss_pred CCCceeCCCchHHHHHHHhcCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEec-cccCCCCCCcchhhhh
Confidence 4443 5567777 7889999999776 67899988 9999999999999999953 333 443221 235
Q ss_pred cc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchh
Q 001989 347 LG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQ 424 (985)
Q Consensus 347 ~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~ 424 (985)
+| +|+++.| |+|+. |.++|++++++++.+.+.....+ .| .+++.
T Consensus 230 ~~~~~d~~s~S-K~~~~-----g~~~G~~~~~~~~~~~~~~~~~~--------------------------~~--~~~~~ 275 (375)
T 2eh6_A 230 FNLKPDVIALA-KGLGG-----GVPIGAILAREEVAQSFTPGSHG--------------------------ST--FGGNP 275 (375)
T ss_dssp GTCCCSEEEEC-GGGGT-----TSCCEEEEEEHHHHTTCCTTSCC--------------------------CS--STTCH
T ss_pred cCCCCCEEEEc-ccccC-----CCCeEEEEEcHHHHhhhcCCCCC--------------------------CC--CCCCH
Confidence 67 8988666 88852 35678999998887766321110 01 11111
Q ss_pred H-HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC-HHHHHHHHHHcCceeeee
Q 001989 425 A-LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-AHAIASAAYKIEMNLRVV 502 (985)
Q Consensus 425 ~-l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~~ 502 (985)
. ..+..++ +..+ +++.++..++.+++++.|++++ ..... +...-+.+..+. ..++.+.|.++||.+...
T Consensus 276 ~~~~~~~~~--l~~~-----~~~~~~~~~~~~~l~~~L~~~~-~~~~~-~~g~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 346 (375)
T 2eh6_A 276 LACRAGTVV--VDEV-----EKLLPHVREVGNYFKEKLKELG-KGKVK-GRGLMLGLELERECKDYVLKALEKGLLINCT 346 (375)
T ss_dssp HHHHHHHHH--HHHH-----HHHHHHHHHHHHHHHHHHHHTT-SSEEE-EETTEEEEECSSCCHHHHHHHHHTTEECEEE
T ss_pred HHHHHHHHH--HHHH-----HHHHHHHHHHHHHHHHHHHHHh-cCCce-EEEEEEEEEEcCcHHHHHHHHHHCCCEEecC
Confidence 1 1111122 2222 1677888889999999999886 32111 111234455554 678999999999988765
Q ss_pred cCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 503 DSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 503 ~~~~lris~t~~~t~edId~li~aL~ 528 (985)
.++.+|++++..+|++|+++++++|+
T Consensus 347 ~~~~iRi~~~~~~~~~~i~~~~~~l~ 372 (375)
T 2eh6_A 347 AGKVLRFLPPLIIQKEHIDRAISVLR 372 (375)
T ss_dssp TTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999986
No 282
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.70 E-value=5.1e-16 Score=180.18 Aligned_cols=293 Identities=15% Similarity=0.142 Sum_probs=184.7
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--- 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~--- 289 (985)
..++++.+|+++|.+. +.++.+|++++.+++.++ . ++||+||+++..|+++...+...++..|++++.+|.+
T Consensus 84 ~~~le~~lA~l~g~~~--~v~~~sG~~Ai~~al~al-~--~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~ 158 (430)
T 3ri6_A 84 VEDLEQRLKNLTGALG--VLALGSGMAAISTAILTL-A--RAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSL 158 (430)
T ss_dssp HHHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHH-C--CTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHH
T ss_pred HHHHHHHHHHHHCCCc--EEEECCHHHHHHHHHHHH-h--CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHH
Confidence 3467789999999876 667788888877776655 2 3899999999999999987765556789999999764
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++++| |++|.+.|+++|+++||++|++++|| +.++.+.+..|.++|+|+++.|. |.|++| |
T Consensus 159 ~l~~ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD-~a~~~~~~~~~~~~g~div~~S~sK~l~g~---g 234 (430)
T 3ri6_A 159 AVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVD-TTMTPPYLLEAKRLGVDIEVLSSTKFISGG---G 234 (430)
T ss_dssp HHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEE-CTTSCTTTCCGGGGTCSEEEEECCCEEETT---E
T ss_pred HHHHhhCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEE-CCCcccccCChHHcCCEEEEECCcccccCC---C
Confidence 4555 8889999999998 88999999999999999999999995 46677777778899999999998 877643 1
Q ss_pred CCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 367 GPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 367 GP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
..-+|++.++.+.....++++-... +.-|...|.... + ...++.-|. . .+++. + |+...+.+.+..+
T Consensus 235 ~~~gG~vv~~~~~~~~~~~~~~~l~-~~~g~~~~i~~~--~-~~~~~~~g~--~--~~~~~---a--~l~l~~l~~l~~r 301 (430)
T 3ri6_A 235 TSVGGVLIDHGLFEWKSLPSLAPYY-AKAGPMAFLYKA--R-KEVFQNLGP--S--LSPHN---A--YLQSLGLETMALR 301 (430)
T ss_dssp EECCEEEEECSCSCGGGSTTTHHHH-HHHGGGHHHHHH--H-HTHHHHHCC--C--CCHHH---H--HHHHHHHHHHHHH
T ss_pred CceEEEEEECChHHhhhccchhhhh-hhhchhhHHHHH--H-HHHHHhcCC--C--CCHHH---H--HHHHhhhhhHHHH
Confidence 1123566643321000011110000 000000000000 0 000111111 0 11221 1 2233344556666
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEc-CC-----CC----------cc-eEEEecCC---HHHHHHHHHHcCcee------e
Q 001989 447 AQRVHGLAGTFALGLKKLGTVEVQ-GL-----PF----------FD-TVKVKCAD---AHAIASAAYKIEMNL------R 500 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~~~-~~-----~~----------~~-~~~~~~~~---~~~v~~~L~~~GI~~------~ 500 (985)
.++..+++.++++.|++..+++.+ .+ |. .. .+.|.+++ +.++.+.|.-.++-+ +
T Consensus 302 ~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~~~~~~~~~~l~~~~~~~s~G~~~s 381 (430)
T 3ri6_A 302 IERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKEASYRFMDALKLIRRATNIHDNKS 381 (430)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHHCSSSEECSCCSCSSC
T ss_pred HHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCHHHHHHHHHhCCcceecCCCCCCCc
Confidence 778889999999999988546633 21 10 22 67777765 444444444333211 0
Q ss_pred e---------------------ecCCeEEEEeccCCCHHHHHHHHHHH
Q 001989 501 V---------------------VDSNTVTASFDETTTLEDVDKLFIVF 527 (985)
Q Consensus 501 ~---------------------~~~~~lris~t~~~t~edId~li~aL 527 (985)
. +.++.||+|++.-+.++-++.|-++|
T Consensus 382 li~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~E~~~dl~~dl~~al 429 (430)
T 3ri6_A 382 LILSPYHVIYALNSHEERLKLEISPAMMRLSVGIEEIEDLKEDILQAL 429 (430)
T ss_dssp EEECTGGGC---------CGGGSCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred eeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHhh
Confidence 0 13578999998766666666666655
No 283
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.70 E-value=2.5e-16 Score=180.99 Aligned_cols=301 Identities=11% Similarity=0.048 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHHHHhCCCc-cc-ee-cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCccc-HHHHHHC--CcE
Q 001989 630 YQEMFNNLGEWLCTITGFDS-FS-LQ-PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN-PATAAMC--GMK 703 (985)
Q Consensus 630 ~~~~~~e~~~~la~l~G~~~-~~-~~-~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~-~~~a~~~--G~~ 703 (985)
..+..+++++++++++|.+. .. ++ .++|++|+..++.++. .++ .++++...|+.. ...+... |.+
T Consensus 76 ~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~--------~~g-v~~v~~~~~~~~~~~~~~~~~~g~~ 146 (398)
T 2fyf_A 76 VKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLI--------DKR-SLHLTYGEFSAKFASAVSKNPFVGE 146 (398)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTC--------SSC-EEEEECSHHHHHHHHHHHHCTTSCC
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhc--------CCC-eEEEeCCHHHHHHHHHHHHhCCCCc
Confidence 34667889999999999974 23 44 6777777654444331 234 234444434311 1134455 888
Q ss_pred EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcc
Q 001989 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~ 782 (985)
++.++++ +|..+.. .++ ++|++|++++| |++|.+. |+++|.++ +|+++++|++|..+...+ ...
T Consensus 147 ~~~v~~~-~g~~~~~----~i~---~~~~~v~~~~~~nptG~~~-~~~~i~~~---~~~~vivD~a~~~~~~~~---~~~ 211 (398)
T 2fyf_A 147 PIIITSD-PGSAPEP----QTD---PSVDVIAWAHNETSTGVAV-AVRRPEGS---DDALVVIDATSGAGGLPV---DIA 211 (398)
T ss_dssp CEEEECC-TTCCCCC----CCC---TTCSEEEEESEETTTTEEC-CCCCCTTC---C-CEEEEECTTTTTTSCC---CGG
T ss_pred eEEEecC-CCCCCCc----ccc---CCCCEEEEeCcCCCcceec-chHHhhhh---cCCeEEEEeccccCCccc---Ccc
Confidence 8899987 3433221 144 67899999987 5799998 88988887 899999999985432211 112
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcC----------CCCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFL----------PSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~l----------p~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
++|++++++||+|+.| +|+|++++++++.+.+ +....+.... .........++ . +...
T Consensus 212 ~~di~~~s~sK~~~~~-----gg~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t-~-----~~~~ 279 (398)
T 2fyf_A 212 ETDAYYFAPQKNFASD-----GGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAV-ENSLKNQTYNT-P-----AIAT 279 (398)
T ss_dssp GCSEEEECTTSTTCSC-----SSEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHH-HHHTTTCCSSC-C-----CHHH
T ss_pred cCcEEEEecCcccCCC-----CceEEEEECHHHHHHhhcccccCCCCCcEEehHHHh-hhcccCCCCCC-C-----CHHH
Confidence 4899999999998532 2689999998765443 1111000000 00000000011 1 1112
Q ss_pred HHHHHHHHHHhcHHH-HHHHHHHHHHHHHHHHHHhhccCCeeecC--CCCceeeEEEEEecCccccCCCCHHHHHHHHHH
Q 001989 853 LPISYTYIAMMGSKG-LTEASKIAILNANYMAKRLEKHYPILFRG--VNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 853 ~~~a~a~l~~lg~eG-l~~~~~~~~~~a~~l~~~L~~g~~l~~~~--~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
..++.+.+..+..+| +.+..++..++++++.+.|++..++.... +.......+.+.++ .+.+..++.++|.+
T Consensus 280 ~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~L~~ 354 (398)
T 2fyf_A 280 LALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFV-----DDVDAGTVAKILRA 354 (398)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEEC-----TTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECC-----CCCCHHHHHHHHHH
Confidence 222334555555565 77888888899999999998632332221 11111113445554 25678899999999
Q ss_pred CCCccCCCCCCC-CCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 930 YGFHGPTMSWPV-PGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 930 ~Gi~~~~~~~p~-~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+||.+....... .+.+||++..++|++|+++ +++.|++++++
T Consensus 355 ~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~--~~~~l~~~l~~ 397 (398)
T 2fyf_A 355 NGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSA--LTECVDWVVER 397 (398)
T ss_dssp TTCBCCSCCTTTCSSEEEEECCTTSCHHHHHH--HHHHHHHHHHT
T ss_pred CCcEEecCcccCCCCEEEEEecCCCCHHHHHH--HHHHHHHHHHh
Confidence 999875321112 3789999999999999999 77888887764
No 284
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.70 E-value=1.2e-15 Score=178.29 Aligned_cols=312 Identities=15% Similarity=0.117 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHHhCCCcc-ceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHHHCC--------
Q 001989 632 EMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG-------- 701 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~-~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~~~G-------- 701 (985)
+...++++.++++++.+.. .++.++|++|++.++.+++.|...+|..++++||+ ...+|+.........|
T Consensus 93 ~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~ 172 (449)
T 3a8u_X 93 PLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLF 172 (449)
T ss_dssp HHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhcccc
Confidence 3456788899999876543 46678899999888887776654555435678887 5678887665544433
Q ss_pred ----cEEEEEcCCCCC-----CCC--------HHHHHHHHHhcC-CCEEEEEEEcC-CCccccccC----HHHHHHHHHH
Q 001989 702 ----MKIVSVGTDAKG-----NIN--------IEELRKAAEANR-DNLSTLMVTYP-STHGVYEEG----IDEICKIIHD 758 (985)
Q Consensus 702 ----~~vv~v~~d~~g-----~iD--------~e~L~~~i~~~~-~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~ 758 (985)
..++.++++... .+| +++|+++|+++. +++++|+++.. +.+|++. + +++|.++|++
T Consensus 173 ~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~-~~~~~l~~l~~l~~~ 251 (449)
T 3a8u_X 173 GQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLV-PPEGYLKRNREICNQ 251 (449)
T ss_dssp CCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBC-CCTTHHHHHHHHHHH
T ss_pred CCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCcc-CCHHHHHHHHHHHHH
Confidence 124455543211 146 999999997432 36777765533 3489876 6 9999999999
Q ss_pred cCCEEEEEccccccccCCCCC---Cc--cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCC
Q 001989 759 NGGQVYMDGANMNAQVGLTSP---GY--IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAP 833 (985)
Q Consensus 759 ~galliVD~a~~~~~~~l~~p---g~--~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~ 833 (985)
+|+++|+|++|. +++..... .. ..+|++++ +|+|+ +|+..+|++++++++.+.+.....+. +
T Consensus 252 ~~~~li~Dev~~-~~g~~g~~~~~~~~~~~~di~s~--sK~l~----~G~~~~G~~~~~~~~~~~l~~~~~~~--~---- 318 (449)
T 3a8u_X 252 HNILLVFDEVIT-GFGRTGSMFGADSFGVTPDLMCI--AKQVT----NGAIPMGAVIASTEIYQTFMNQPTPE--Y---- 318 (449)
T ss_dssp HTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEEEE--CGGGG----TTSSCCEEEEEEHHHHHHHHTCSSCT--T----
T ss_pred hCCEEEEecccc-CccccCcchhhhhcCCCCCEEEE--ccccc----CCCCceEEEEECHHHHHHhhccCccc--c----
Confidence 999999999983 22211111 11 23688755 49884 22145888888876654432110000 0
Q ss_pred CCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc--cCCeeec-CCCCceeeEEEEEec
Q 001989 834 EKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFR-GVNGTVAHEFIVDLR 910 (985)
Q Consensus 834 ~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~--g~~l~~~-~~~~~~~~~~iv~~~ 910 (985)
..... ...++.+++..++++.+.+..+..++ ..++..++.++++++|++ .+.+... ...+. .+.+.++
T Consensus 319 --~~~~~-~~~t~~~~~~~~aa~~aal~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~---~~~i~~~ 389 (449)
T 3a8u_X 319 --AVEFP-HGYTYSAHPVACAAGLAALCLLQKEN---LVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGL---AGAIQIA 389 (449)
T ss_dssp --SCSSC-CCCTTTTCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETT---EEEEEEC
T ss_pred --ccccc-ccCCCcccHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEE---EEEEEEe
Confidence 00000 00111223444445556666554443 345667788889998876 1222110 00111 1344543
Q ss_pred CccccCCC--CHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 911 GLKNTAGI--EPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 911 ~~~~~~g~--~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
... ... +..++.+.|.++||.+... .+.+||+++..+|++||++ +++.|+++++++
T Consensus 390 ~~~--~~~~~~~~~~~~~l~~~Gv~v~~~----g~~iRis~~~~~t~~~i~~--~l~~l~~~l~~~ 447 (449)
T 3a8u_X 390 PRD--GDAIVRPFEAGMALWKAGFYVRFG----GDTLQFGPTFNSKPQDLDR--LFDAVGEVLNKL 447 (449)
T ss_dssp CBT--TBSSHHHHHHHHHHHHHTEECEEE----TTEEEECCCTTCCHHHHHH--HHHHHHHHHHHC
T ss_pred cCc--ccccccHHHHHHHHHHCCcEEecC----CCEEEEECCCcCCHHHHHH--HHHHHHHHHHHH
Confidence 100 001 2347999999999987543 2799999999999999999 888898887654
No 285
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.70 E-value=1.1e-15 Score=185.99 Aligned_cols=301 Identities=15% Similarity=0.095 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~- 712 (985)
+.++++.+|+++|.+.+.++.+++++|+.++++++. +++|+||+++..|.++...+.+.|+++++++.+.+
T Consensus 197 i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~--------~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~~~ 268 (715)
T 3n75_A 197 HKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSA--------PAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRNA 268 (715)
T ss_dssp HHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHC--------CTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCBCT
T ss_pred HHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhC--------CCCCEEEECCCccHHHHHHHHHcCCEEEEEeccccc
Confidence 678999999999998876666655677766555442 47899999999998888888899999999987543
Q ss_pred ----CCC-----CHHHHHHHHHhcCCCEE---EEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccc--cCCC-
Q 001989 713 ----GNI-----NIEELRKAAEANRDNLS---TLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ--VGLT- 777 (985)
Q Consensus 713 ----g~i-----D~e~L~~~i~~~~~~t~---~Vvv~~pn~~G~i~~di~eI~~la~~~galliVD~a~~~~~--~~l~- 777 (985)
+.+ |+++|+++|+++ ++++ +|++++||++|.+. |+++|+++|++++ ++||+||.... +...
T Consensus 269 ~gi~~~i~~~~~d~e~Le~~l~~~-~~~k~p~~vivt~pn~~G~v~-dl~~I~ela~~~~--livDEAH~~~~~f~~~~~ 344 (715)
T 3n75_A 269 YGILGGIPQSEFQHATIAKRVKET-PNATWPVHAVITNSTYDGLLY-NTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYE 344 (715)
T ss_dssp TCCBCCCCGGGGSHHHHHHHHHHS-TTCCSCSEEEEESSCTTSEEE-CHHHHHHHCCCSE--EEEECTTCTTGGGSGGGT
T ss_pred cccccCcccccCCHHHHHHHHhhC-cCccCceEEEEECCCCCCccC-CHHHHHHHhCcCc--EEEccccccccccCCccc
Confidence 224 899999999854 3344 89999999999998 8999999998764 79999985332 1111
Q ss_pred --CCCccC--CcEE---EeCCcccccccCCCCCC-ceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhh
Q 001989 778 --SPGYIG--ADVC---HLNLHKTFCIPHGGGGP-GMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 778 --~pg~~g--~Di~---~~s~hK~l~~p~g~GGP-g~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~ 849 (985)
.+...+ +|++ ++|+||+| +|| ++|++.+++......-..... ...++ +.++
T Consensus 345 ~~~al~~g~~aD~vii~~~S~hKtL------~gltqgs~i~v~~~i~~~~~~~~~~-----------~~~ST-Spsy--- 403 (715)
T 3n75_A 345 GKCGMSGGRVEGKVIYETQSTHKLL------AAFSQASMIHVKGDVNEETFNEAYM-----------MHTTT-SPHY--- 403 (715)
T ss_dssp TSSTTSSSCCTTCEEEEEECHHHHS------SCCTTCEEEEEESCCCHHHHHHHHH-----------HTSCS-SCCH---
T ss_pred cccccccCcCCCEEEEEEecccccc------cCCCCeeEEEeCchhhHHHHHHHHH-----------hhcCC-CchH---
Confidence 111223 6866 89999998 355 678888876521110000000 00001 1111
Q ss_pred hHHHHHHHHHHHHhcH-HHHHHHHHHHHHHHHHHHHHhhc--c------CCeeecC-----------C-----------C
Q 001989 850 ALILPISYTYIAMMGS-KGLTEASKIAILNANYMAKRLEK--H------YPILFRG-----------V-----------N 898 (985)
Q Consensus 850 ~~~~~~a~a~l~~lg~-eGl~~~~~~~~~~a~~l~~~L~~--g------~~l~~~~-----------~-----------~ 898 (985)
..++..-+.++.+.. +| .++.++..+++++++++|++ + +.+..+. + .
T Consensus 404 -~~~AsldaA~~~~~~~~g-~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~ 481 (715)
T 3n75_A 404 -GIVASTETAAAMMKGNAG-KRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDN 481 (715)
T ss_dssp -HHHHHHHHHHHHHSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCS
T ss_pred -HHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCccccccccccccc
Confidence 111111223344432 34 34567888999999999875 2 2221100 0 0
Q ss_pred Cce-e--eEEEEEecCcc-----ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 899 GTV-A--HEFIVDLRGLK-----NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 899 ~~~-~--~~~iv~~~~~~-----~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
+.. . .-+++..+++. ...|+++..+.+.|.++||.+-... ...+.+-+|...|++++++ ++++|.++
T Consensus 482 ~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d---~~~vl~l~s~g~~~~~~~~--L~~aL~~~ 556 (715)
T 3n75_A 482 EHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTG---PYNLLFLFSIGIDKTKALS--LLRALTDF 556 (715)
T ss_dssp SSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEE---TTEEEEECCTTCCHHHHHH--HHHHHHHH
T ss_pred CcccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecC---CCcEEEEeCCCCCHHHHHH--HHHHHHHH
Confidence 000 0 01344444321 1126788999999999999875432 3678888899999999999 66777766
Q ss_pred HHhh
Q 001989 971 LHRL 974 (985)
Q Consensus 971 ~~~~ 974 (985)
-+..
T Consensus 557 ~~~~ 560 (715)
T 3n75_A 557 KRAF 560 (715)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5443
No 286
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.69 E-value=2.4e-16 Score=182.27 Aligned_cols=212 Identities=17% Similarity=0.148 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH----HHCCcEEEEEc
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA----AMCGMKIVSVG 708 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a----~~~G~~vv~v~ 708 (985)
...++++++++++|.+.. +.+++|++|+..+++++. +++|+||+++..|+...... ...|++++.+|
T Consensus 82 ~~~~l~~~la~~~g~~~~-~~~~sG~~Ai~~al~~l~--------~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 152 (414)
T 3ndn_A 82 TVSVFEERLRLIEGAPAA-FATASGMAAVFTSLGALL--------GAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVD 152 (414)
T ss_dssp HHHHHHHHHHHHHTCSEE-EEESSHHHHHHHHHHTTC--------CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeC
Confidence 456889999999998654 667788877755444331 47899999887776554443 34899999999
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEE
Q 001989 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~ 787 (985)
.+ |+++|+++++ ++|++|++++| |++|.+. |+++|+++|+++|+++++|+++..+ .+..|..+|+|++
T Consensus 153 ~~-----d~~~l~~ai~---~~t~~v~le~p~NptG~~~-~l~~i~~la~~~g~~livDe~~~~~--~~~~~~~~g~div 221 (414)
T 3ndn_A 153 GD-----DLSQWERALS---VPTQAVFFETPSNPMQSLV-DIAAVTELAHAAGAKVVLDNVFATP--LLQQGFPLGVDVV 221 (414)
T ss_dssp TT-----CHHHHHHHTS---SCCSEEEEESSCTTTCCCC-CHHHHHHHHHHTTCEEEEECTTTHH--HHCCCGGGTCSEE
T ss_pred CC-----CHHHHHHhcC---CCCeEEEEECCCCCCCccc-cHHHHHHHHHHcCCEEEEECCCccc--ccCCchhcCCCeE
Confidence 75 8999999997 78999999999 5799998 8999999999999999999998532 2345667899999
Q ss_pred EeCCcccccccCCCCCCceEEEEEcccccC-cCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAP-FLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~-~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~e 866 (985)
+.|++|+|+.+ |.+.+|+++++++... .+.... . ..+...+ + ..+|..+. +.+
T Consensus 222 ~~S~sK~l~~~---G~~~~G~vv~~~~~~~~~l~~~~-~------------~~g~~~~-----~---~~a~~~~~--~l~ 275 (414)
T 3ndn_A 222 VYSGTKHIDGQ---GRVLGGAILGDREYIDGPVQKLM-R------------HTGPAMS-----A---FNAWVLLK--GLE 275 (414)
T ss_dssp EEETTTTTTCS---SCCCCEEEEECHHHHTTHHHHHH-H------------HHCCCCC-----H---HHHHHHHH--HGG
T ss_pred eccCCccccCC---CCceEEEEEECHHHHHHHHHHHH-H------------HcCCCCC-----H---HHHHHHHH--HHH
Confidence 99999998421 2155899998875443 221100 0 0011111 1 12333333 334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Q 001989 867 GLTEASKIAILNANYMAKRLEKHY 890 (985)
Q Consensus 867 Gl~~~~~~~~~~a~~l~~~L~~g~ 890 (985)
.+..+.++..++++++.+.|++..
T Consensus 276 ~l~~r~~~~~~~a~~l~~~L~~~p 299 (414)
T 3ndn_A 276 TLAIRVQHSNASAQRIAEFLNGHP 299 (414)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 466667778889999999998643
No 287
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.69 E-value=1.1e-16 Score=183.92 Aligned_cols=158 Identities=15% Similarity=0.162 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEEEEEc
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVG 708 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~vv~v~ 708 (985)
..+++++.+++++|.+. .+.+++|++|+..+ ++ +. .++++||++...|+.... .++..|++++.+|
T Consensus 56 ~~~~lr~~la~~~g~~~-~i~~~sGt~a~~~a---l~-~~-----~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~ 125 (393)
T 1n8p_A 56 NRENLERAVAALENAQY-GLAFSSGSATTATI---LQ-SL-----PQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN 125 (393)
T ss_dssp HHHHHHHHHHHHTTCSE-EEEESCHHHHHHHH---HH-TS-----CSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEES
T ss_pred hHHHHHHHHHHHhCCCc-EEEECChHHHHHHH---HH-Hc-----CCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeC
Confidence 35688999999999874 56677787766443 33 21 367899998876653322 2346799999999
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHc----CCEEEEEccccccccCCCCCCccC
Q 001989 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDN----GGQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~----galliVD~a~~~~~~~l~~pg~~g 783 (985)
++ | ++|+++++ ++|++|++++| |++|.+. |+++|+++|+++ |+++|+|++|..+. +..+..++
T Consensus 126 ~~-----d-~~l~~~i~---~~t~lv~~~~~~nptG~~~-~l~~i~~la~~~~~~~~~~livD~a~~~~~--~~~~~~~~ 193 (393)
T 1n8p_A 126 DL-----L-NDLPQLIK---ENTKLVWIETPTNPTLKVT-DIQKVADLIKKHAAGQDVILVVDNTFLSPY--ISNPLNFG 193 (393)
T ss_dssp SH-----H-HHHHHHSC---SSEEEEEECSSCTTTCCCC-CHHHHHHHHHHHTTTTTCEEEEECTTTHHH--HCCGGGGT
T ss_pred CC-----h-HHHHHhcc---cCceEEEEECCCCCcceec-CHHHHHHHHHHhCCCCCCEEEEeCCccccc--cCCHHHcC
Confidence 75 7 89999997 78999999998 4799998 899999999999 99999999986432 23566678
Q ss_pred CcEEEeCCcccccccCCCCCCc--e-EEEEEc-ccccCc
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPG--M-GPIGVK-KHLAPF 818 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg--~-G~i~~~-~~l~~~ 818 (985)
+|+++.|+||+|+ |+| + |+++++ +++.+.
T Consensus 194 ~di~~~S~sK~~g------~~G~rigG~~~~~~~~~~~~ 226 (393)
T 1n8p_A 194 ADIVVHSATKYIN------GHSDVVLGVLATNNKPLYER 226 (393)
T ss_dssp CSEEEEETTTTTT------CSSCCCCEEEEESCHHHHHH
T ss_pred CeEEEEECccccc------CCCCceeEEEEeCCHHHHHH
Confidence 9999999999884 344 5 888885 555443
No 288
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.69 E-value=1.1e-15 Score=176.67 Aligned_cols=271 Identities=19% Similarity=0.175 Sum_probs=185.8
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---h
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK---D 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~---~ 290 (985)
.++++.+|+++|.+. +.++.+|++++++++.++ . ++||+||++...|+.+...++..++..|++++.+|.+ +
T Consensus 84 ~~l~~~la~~~g~~~--~~~~~sG~~Ai~~al~~l-~--~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~ 158 (414)
T 3ndn_A 84 SVFEERLRLIEGAPA--AFATASGMAAVFTSLGAL-L--GAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQ 158 (414)
T ss_dssp HHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHTT-C--CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTCHHH
T ss_pred HHHHHHHHHHHCCCc--EEEECCHHHHHHHHHHHH-h--CCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCCCHHH
Confidence 456789999999754 678889988877766654 2 3899999999999999888876556689999999764 4
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001989 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
|++ ++++|++|++.+| |.+|.+.|+++|+++||++|+++++| +.++.+....+.++|+|+++.|. |.|+++ |.
T Consensus 159 l~~ai~~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livD-e~~~~~~~~~~~~~g~div~~S~sK~l~~~---G~ 234 (414)
T 3ndn_A 159 WERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLD-NVFATPLLQQGFPLGVDVVVYSGTKHIDGQ---GR 234 (414)
T ss_dssp HHHHTSSCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEE-CTTTHHHHCCCGGGTCSEEEEETTTTTTCS---SC
T ss_pred HHHhcCCCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEE-CCCcccccCCchhcCCCeEeccCCccccCC---CC
Confidence 555 7889999999998 78999999999999999999999995 45566655567789999999998 777432 21
Q ss_pred CcEEEEEEchhhHh-cCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHH
Q 001989 368 PHAAFLATSQEYKR-MMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 368 P~~G~l~~~~~~~~-~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i 446 (985)
+-+|+++++++.+. .+.. .++..|.. . .++ .+. +...+.+.+...
T Consensus 235 ~~~G~vv~~~~~~~~~l~~-------------------------~~~~~g~~-~---~~~---~a~--~~~~~l~~l~~r 280 (414)
T 3ndn_A 235 VLGGAILGDREYIDGPVQK-------------------------LMRHTGPA-M---SAF---NAW--VLLKGLETLAIR 280 (414)
T ss_dssp CCCEEEEECHHHHTTHHHH-------------------------HHHHHCCC-C---CHH---HHH--HHHHHGGGHHHH
T ss_pred ceEEEEEECHHHHHHHHHH-------------------------HHHHcCCC-C---CHH---HHH--HHHHHHHHHHHH
Confidence 33689988877654 2200 00111111 0 111 111 223344567777
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEc-CC-----C-----------CcceEEEecCC--------HHHHHHHHHHcCceee-
Q 001989 447 AQRVHGLAGTFALGLKKLGTVEVQ-GL-----P-----------FFDTVKVKCAD--------AHAIASAAYKIEMNLR- 500 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~~~-~~-----~-----------~~~~~~~~~~~--------~~~v~~~L~~~GI~~~- 500 (985)
.++..+++.++.+.|++..+++.+ .+ + ....+.|.+++ +.++.+.|...++.++
T Consensus 281 ~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~s~ 360 (414)
T 3ndn_A 281 VQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNL 360 (414)
T ss_dssp HHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEECSCC
T ss_pred HHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEcCCC
Confidence 788889999999999987445432 11 1 12245666543 3445555544443221
Q ss_pred --------------------------eecCCeEEEEeccCCCHHHHHHHHHHH
Q 001989 501 --------------------------VVDSNTVTASFDETTTLEDVDKLFIVF 527 (985)
Q Consensus 501 --------------------------~~~~~~lris~t~~~t~edId~li~aL 527 (985)
-+.++.||+|++.-++++-++.|.++|
T Consensus 361 G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~e~~~dli~dl~~al 413 (414)
T 3ndn_A 361 GDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGLEDTDDLIADIDRAL 413 (414)
T ss_dssp SCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred CCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHhh
Confidence 012578999999877777777776665
No 289
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.69 E-value=6.9e-15 Score=167.99 Aligned_cols=268 Identities=11% Similarity=0.023 Sum_probs=181.5
Q ss_pred HHHHHHHh----cCC--CCc-ceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 216 FQTMIADL----TGL--PMS-NASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 216 ~q~~ia~L----~g~--~~~-~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
+++.+|++ +|. ++. ++.+++|+|.+++.++.++ . ++||+|+++...|+++...++. .|.+++.++.
T Consensus 72 l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~-~--~~gd~vl~~~p~~~~~~~~~~~----~g~~~~~v~~ 144 (386)
T 1u08_A 72 LREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITAL-V--RNGDEVICFDPSYDSYAPAIAL----SGGIVKRMAL 144 (386)
T ss_dssp HHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHH-C--CTTCEEEEEESCCTTHHHHHHH----TTCEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHh-C--CCCCEEEEeCCCchhHHHHHHH----cCCEEEEeec
Confidence 44455554 574 455 8999999998888777664 2 3789999999999998887653 5777776653
Q ss_pred ---------hhhhc-cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCC-----CCCC----
Q 001989 289 ---------KDIDY-KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTIL-----KPPG---- 345 (985)
Q Consensus 289 ---------~~l~~-l~~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l-----~~~~---- 345 (985)
++|++ +++++++|++++| |.+|.+. ++++|+++|+++|+++++|. ..+.... .+..
T Consensus 145 ~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~g~~~~~~~~~~~ 223 (386)
T 1u08_A 145 QPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDE-VYEHINFSQQGHASVLAHPQ 223 (386)
T ss_dssp CTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEEC-TTTTCBCCSSCCCCGGGSHH
T ss_pred CcccCcCCHHHHHHhhcccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEc-cccccccCCCCCcChhcccC
Confidence 34556 7788999999988 7899887 47999999999999999953 3332111 0111
Q ss_pred cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchh
Q 001989 346 ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQ 424 (985)
Q Consensus 346 ~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~ 424 (985)
.++.|++++|. |.|+.| |-.+|++++++++++.+... ++ ..+ .+.+.
T Consensus 224 ~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~~~-------------------------~~-~~~--~~~~~ 271 (386)
T 1u08_A 224 LRERAVAVSSFGKTYHMT----GWKVGYCVAPAPISAEIRKV-------------------------HQ-YLT--FSVNT 271 (386)
T ss_dssp HHTTEEEEEEHHHHTTCG----GGCCEEEECCHHHHHHHHHH-------------------------HH-HHT--SSCCH
T ss_pred ccCcEEEEecchhhcCCc----ccceEEEEcCHHHHHHHHHH-------------------------HH-hhc--cCCCh
Confidence 35789999998 766422 12279999988877655100 00 000 11111
Q ss_pred -HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC-----CHHHHHHHHH-HcCc
Q 001989 425 -ALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA-----DAHAIASAAY-KIEM 497 (985)
Q Consensus 425 -~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-----~~~~v~~~L~-~~GI 497 (985)
...++.++ +.. +.+.++++.++..++.+++.+.|+++| +++..+....-+.+..+ +..++.++|. ++||
T Consensus 272 ~~~~a~~~~--l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi 347 (386)
T 1u08_A 272 PAQLALADM--LRA-EPEHYLALPDFYRQKRDILVNALNESR-LEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGV 347 (386)
T ss_dssp HHHHHHHHH--HHH-CTHHHHTHHHHHHHHHHHHHHHTTSSS-CEECCCCBSSEEEEECTTTCCSCHHHHHHHHHHHSCE
T ss_pred HHHHHHHHH--HhC-CcHHHHHHHHHHHHHHHHHHHHHHHCC-CeecCCCceEEEEEecCCCCCCCHHHHHHHHHHhCCE
Confidence 11222222 232 356788899999999999999999987 88764321122344443 2678888886 6799
Q ss_pred eeeee--------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 498 NLRVV--------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 498 ~~~~~--------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+... .++.+|++++ ++++||+++++.|.+
T Consensus 348 ~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 348 AAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp ECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred EEeCchHhCCCCCCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence 87532 2468999997 489999999999864
No 290
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.69 E-value=3.3e-15 Score=173.00 Aligned_cols=285 Identities=16% Similarity=0.125 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHhCCC-c-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCcccHHHHHHCC---------
Q 001989 634 FNNLGEWLCTITGFD-S-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPATAAMCG--------- 701 (985)
Q Consensus 634 ~~e~~~~la~l~G~~-~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~-~~Hg~~~~~a~~~G--------- 701 (985)
..++++.+++++|.+ . ..++.++|+++++.++.+++.+ ++++||+++ .+|+.........|
T Consensus 88 ~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~-------~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~ 160 (419)
T 2eo5_A 88 QLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNT-------GRKYIIAFLGGFHGRTFGSISLTASKAVQRSIV 160 (419)
T ss_dssp HHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTT-------SCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSS
T ss_pred HHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHh-------hCCcEEEECCCcCCCCHhhHhhcCCcccccccc
Confidence 457788999999986 3 3466688888887666655421 267888855 67887765553322
Q ss_pred ----cEEEEEcCCCCCC----------------CCHHHHH-HHHHhcC--CCEEEEEEEcC-C-CccccccC----HHHH
Q 001989 702 ----MKIVSVGTDAKGN----------------INIEELR-KAAEANR--DNLSTLMVTYP-S-THGVYEEG----IDEI 752 (985)
Q Consensus 702 ----~~vv~v~~d~~g~----------------iD~e~L~-~~i~~~~--~~t~~Vvv~~p-n-~~G~i~~d----i~eI 752 (985)
.+++.+|.+.+.+ +|+++|+ ++++++. +++++|++ +| | ++|.+. + +++|
T Consensus 161 ~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~-~p~~~~tG~~~-~~~~~l~~l 238 (419)
T 2eo5_A 161 GPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFF-EPIQGEGGYVI-PPKNFFAEL 238 (419)
T ss_dssp CCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEE-CSSBTTTTSBC-CCTTHHHHH
T ss_pred CCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEE-eCccCCCCCcc-CCHHHHHHH
Confidence 2577788754322 4689999 9987421 35666665 55 3 579754 4 9999
Q ss_pred HHHHHHcCCEEEEEcccc-ccccCC-CCCC--ccCCcEEEeCCcccccccCCCCC-CceEEEEEcccccCcCCCCccccC
Q 001989 753 CKIIHDNGGQVYMDGANM-NAQVGL-TSPG--YIGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVST 827 (985)
Q Consensus 753 ~~la~~~galliVD~a~~-~~~~~l-~~pg--~~g~Di~~~s~hK~l~~p~g~GG-Pg~G~i~~~~~l~~~lp~~~~g~~ 827 (985)
.++|+++|+++|+|++|. ++..+. .... ....|++++ .|+|+ +| .++|++++++++. .+.+.. +
T Consensus 239 ~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~--sK~~~-----~G~~riG~~~~~~~~~-~~~~~~-~-- 307 (419)
T 2eo5_A 239 QKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITL--AKALG-----GGIMPIGATIFRKDLD-FKPGMH-S-- 307 (419)
T ss_dssp HHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGG-----TTTSCCEEEEEEGGGC-CC--------
T ss_pred HHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEe--ccccc-----CCccceEEEEEchHhh-cCCccc-C--
Confidence 999999999999999985 211111 0001 224688755 48874 36 6899999998876 552111 0
Q ss_pred CCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEE
Q 001989 828 GGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIV 907 (985)
Q Consensus 828 ~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv 907 (985)
.+ .+. ++..++++.+++..+. +..++..++++++.++|++.+.. ..+ .+. -+.+
T Consensus 308 ----------~t--~~~----n~~~~~aa~aal~~~~-----~~~~~~~~~~~~l~~~L~~~~~~-~~~-~g~---~~~i 361 (419)
T 2eo5_A 308 ----------NT--FGG----NALACAIGSKVIDIVK-----DLLPHVNEIGKIFAEELQGLADD-VRG-IGL---AWGL 361 (419)
T ss_dssp -----------C--CCC----CHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHTTSSSE-EEE-ETT---EEEE
T ss_pred ----------CC--CCC----CHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhh-eEe-eeE---EEEE
Confidence 11 111 2233344445554332 24456778889999999763111 111 122 1334
Q ss_pred EecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 908 DLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 908 ~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
++.+ .+.... +.+.|.++||.+.... .+++||+++..+|++|+++ +++.|+++++++
T Consensus 362 ~~~~----~~~~~~-~~~~l~~~Gv~v~~~~---~~~lRis~~~~~t~e~i~~--~l~~l~~~l~~~ 418 (419)
T 2eo5_A 362 EYNE----KKVRDR-IIGESFKRGLLLLPAG---RSAIRVIPPLVISEEEAKQ--GLDILKKVIKVV 418 (419)
T ss_dssp ECSC----HHHHHH-HHHHHHHTTEECEEET---TTEEEECCCTTCCHHHHHH--HHHHHHHHHHHC
T ss_pred EEec----CccHHH-HHHHHHHCCCEEecCC---CCEEEEECCCCCCHHHHHH--HHHHHHHHHHhc
Confidence 5420 001245 8899999999876443 4799999999999999999 888898888764
No 291
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.69 E-value=2.5e-16 Score=181.78 Aligned_cols=298 Identities=10% Similarity=0.060 Sum_probs=177.6
Q ss_pred hhHHHHHHHHHHHHHHHhCCCc--cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEE
Q 001989 628 QGYQEMFNNLGEWLCTITGFDS--FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~~~--~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv 705 (985)
+|..++.+++.+++....+.+. ..++.++|++|+..++.++. .++|+|+++.+.|+.+...++..|.+++
T Consensus 79 ~g~~~lr~~la~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~~~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~ 150 (413)
T 3t18_A 79 EGEKDYRKIVIDTLFGPYKPEGYISAIATPGGTGAIRSAIFSYL--------DEGDPLICHDYYWAPYRKICEEFGRNFK 150 (413)
T ss_dssp TCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHC--------CSSCEEEEESSCCTHHHHHHHHHTCEEE
T ss_pred CCCHHHHHHHHHHHhcccCccccCcEEEcCccHHHHHHHHHHhc--------CCCCEEEECCCCcccHHHHHHHhCCeEE
Confidence 4655555556665555544431 23555666666654444321 4789999999888888777888999999
Q ss_pred EEcC-CCCCCCCHHHHHHHHHhc-CCCEE-EEEEEcC--CCccccccCHH---HHHHHHH------HcCCEEEEEccccc
Q 001989 706 SVGT-DAKGNINIEELRKAAEAN-RDNLS-TLMVTYP--STHGVYEEGID---EICKIIH------DNGGQVYMDGANMN 771 (985)
Q Consensus 706 ~v~~-d~~g~iD~e~L~~~i~~~-~~~t~-~Vvv~~p--n~~G~i~~di~---eI~~la~------~~galliVD~a~~~ 771 (985)
.+|. ++++.+|+++|++++++. .++++ ++++++| |++|.+. +.+ +|+++|+ ++|+++++|+++.
T Consensus 151 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~- 228 (413)
T 3t18_A 151 TFEFFTDDFAFNIDVYKEAIDEGIRDSDRIASLINSPGNNPTGYSL-SDEEWDEVITFLKEKAEDKDKKITLIVDVAYL- 228 (413)
T ss_dssp EECCBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTTSTTCEEEEEEECTTG-
T ss_pred EeeccCCCCCcCHHHHHHHHHHHhhcCCCEEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHHhhccCCcEEEEEecccc-
Confidence 9998 445789999999999731 01455 7888888 5799987 554 5555665 8999999999973
Q ss_pred cccCCCC---C-----CccCCc---EEEeCCcccccccCCCCCCceEEEEE---cccccCcCCCCccccCCCCCCCCCCC
Q 001989 772 AQVGLTS---P-----GYIGAD---VCHLNLHKTFCIPHGGGGPGMGPIGV---KKHLAPFLPSHPVVSTGGIPAPEKSQ 837 (985)
Q Consensus 772 ~~~~l~~---p-----g~~g~D---i~~~s~hK~l~~p~g~GGPg~G~i~~---~~~l~~~lp~~~~g~~~~~~~~~~~~ 837 (985)
.++.-.. + .....| +++.|++|+|++| |.++|++++ ++++.+.+........ + .
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~----G~riG~~~~~~~~~~~~~~~~~~~~~~~-------~-~ 296 (413)
T 3t18_A 229 EFAGDGDQQRKFFEKFSNLPRNLFVVVAFSMSKSHTAY----GLRSGAAVGISSSKEIIEEFEASLAHSA-------R-C 296 (413)
T ss_dssp GGSSSSSTTTGGGGGGTTCCTTEEEEEEEEHHHHTTCG----GGCCEEEEEEESCHHHHHHHHHHHHHHH-------H-H
T ss_pred cccCChhhHHHHHHHHhhcCCCeeEEEEEecCccCCCc----CcCcEEEEEecCCHHHHHHHHHHHHHhh-------h-c
Confidence 2211111 0 112223 6778999998653 567999998 6666554321100000 0 0
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHHhc----HHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCc
Q 001989 838 PLGTIAAAPWGSALILPISYTYIAMMG----SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGL 912 (985)
Q Consensus 838 ~~~~i~s~~~g~~~~~~~a~a~l~~lg----~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~ 912 (985)
.+++.+ .....++.+++.... .+.+++..++..++.+++.+.|++ ++.+. .+.+.++ +.+++
T Consensus 297 ~~~~~~------~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~--~~~~~~~--~~~~~--- 363 (413)
T 3t18_A 297 NWSNGT------HAAQNILIELERAENKKIYEQELVDLRNMLKSRADVFVTAAKENKLTMI--PYFGGFF--TFIPT--- 363 (413)
T ss_dssp HTSSCC------HHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCB--CCCSSSC--EEEEC---
T ss_pred cccCCC------hHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc--CCCceEE--EEeCC---
Confidence 001111 111111112221110 122334455667788888888876 55542 2223332 12332
Q ss_pred cccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 913 KNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 913 ~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+..++.+.|.++||.+... ++++||+++..++++.+++ |.+++++++
T Consensus 364 -----~~~~~~~~~l~~~gv~v~~g----~~~iRis~~~~~~~~~l~~------l~~~l~~~~ 411 (413)
T 3t18_A 364 -----DKAFDIVKDLEKENIFTIPS----AKGIRVAICGVGEEKIPKL------VQRLAFYTN 411 (413)
T ss_dssp -----SCHHHHHHHHHHTTEECEEC----SSEEEECTTTSCGGGHHHH------HHHHHHHHH
T ss_pred -----CCHHHHHHHHHhCCEEEecC----CCceEEEEeeCCHHHHHHH------HHHHHHHHh
Confidence 26788999999999987532 4799999985555444444 556655543
No 292
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.69 E-value=7e-15 Score=166.64 Aligned_cols=264 Identities=13% Similarity=0.117 Sum_probs=184.3
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchh---
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKD--- 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~--- 290 (985)
.++++.+|+++|.++.++.+++|+|.+++.++.++ ++|+|+++...|+.+...++. .|.+++.++.+.
T Consensus 62 ~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~-----~gd~vl~~~p~y~~~~~~~~~----~g~~~~~v~~~~~~~ 132 (364)
T 1lc5_A 62 FHLHQALARHHQVPASWILAGNGETESIFTVASGL-----KPRRAMIVTPGFAEYGRALAQ----SGCEIRRWSLREADG 132 (364)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH-----CCSEEEEEESCCTHHHHHHHH----TTCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc-----CCCeEEEeCCCcHHHHHHHHH----cCCeEEEEeCCcccc
Confidence 46788999999998888999999998887766554 459999999999998887753 578888776531
Q ss_pred ---hh---c-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCC------CCCCcccceEEE
Q 001989 291 ---ID---Y-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL------KPPGELGADIVV 353 (985)
Q Consensus 291 ---l~---~-l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l------~~~~~~GaDi~v 353 (985)
++ + +++++++|++.+| |.+|.+.| +++|+++|+++|+++++|. ..+.... .....++.|+++
T Consensus 133 ~~~l~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~i~~ 211 (364)
T 1lc5_A 133 WQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDE-AFIDFIPHETGFIPALKDNPHIWVL 211 (364)
T ss_dssp TCCCTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC-TTGGGSTTCCCSGGGCTTCTTEEEE
T ss_pred cchhHHHHHhccCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEEC-cChhhccCccchhhHhccCCCEEEE
Confidence 23 2 5578899998888 67999987 9999999999999999953 3332211 112456889999
Q ss_pred ecC-ccccccCCCCCCcEEEEE-EchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHH
Q 001989 354 GSA-QRFGVPMGYGGPHAAFLA-TSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMA 431 (985)
Q Consensus 354 ~s~-k~lg~P~~~GGP~~G~l~-~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~a 431 (985)
+|. |.|+.| |-.+|+++ .++++++.+... ..+.+. ..+ +..+
T Consensus 212 ~s~sK~~~~~----G~r~G~~~~~~~~~~~~l~~~----------------------------~~~~~~---~~~-~~~~ 255 (364)
T 1lc5_A 212 RSLTKFYAIP----GLRLGYLVNSDDAAMARMRRQ----------------------------QMPWSV---NAL-AALA 255 (364)
T ss_dssp EESTTTTTCT----TTCCEEEECCCHHHHHHHHHH----------------------------SCTTCS---CHH-HHHH
T ss_pred EECchhhcCC----ccceEEEEECCHHHHHHHHHh----------------------------CCCCCC---CHH-HHHH
Confidence 997 877532 33468998 888876654100 000111 111 1112
Q ss_pred HHHHHHhC-cchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC-HHHHHHHHHHcCceeeee------c
Q 001989 432 AMYAVYHG-PEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-AHAIASAAYKIEMNLRVV------D 503 (985)
Q Consensus 432 a~~l~~~g-~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~~------~ 503 (985)
+. ..+. .+.++++.++..++.+++.+.|++++++++... ...-+.+..++ ..++.+.|.++||.+... .
T Consensus 256 ~~--~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~g~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~ 332 (364)
T 1lc5_A 256 GE--VALQDSAWQQATWHWLREEGARFYQALCQLPLLTVYPG-RANYLLLRCEREDIDLQRRLLTQRILIRSCANYPGLD 332 (364)
T ss_dssp HH--HGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCC-SSSEEEEEESCTTCCHHHHHHTTTEECEECTTSTTCC
T ss_pred HH--HHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCC-CCeEEEEECCCcHHHHHHHHHHCCcEEeeCcccCCCC
Confidence 21 1221 346788888889999999999998833887632 22224455554 567888999999988642 1
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 504 SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 ~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++.+|++++ +.+|+|+++++|..
T Consensus 333 ~~~iRis~~---~~~~~~~l~~~l~~ 355 (364)
T 1lc5_A 333 SRYYRVAIR---SAAQNERLLAALRN 355 (364)
T ss_dssp TTEEEEECC---CHHHHHHHHHHHHH
T ss_pred CCEEEEEeC---CHHHHHHHHHHHHH
Confidence 478999965 79999999999974
No 293
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.69 E-value=1.8e-14 Score=163.22 Aligned_cols=339 Identities=15% Similarity=0.165 Sum_probs=215.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCc-cceecCCCCCC-CCCcHHHHHHHH------hCCccccccCCChhh---Hhhh
Q 001989 140 KFSKFDEGLTESQMIEHMQKLASMNKV-YKSFIGMGYYN-THVPPVILRNIM------ENPAWYTQYTPYQAE---IAQG 208 (985)
Q Consensus 140 ~lp~~~~~~se~e~~~~~~~l~~~n~~-~~~~lG~g~y~-~~~p~~v~~~i~------~~~~~~t~~~pyq~e---~sqg 208 (985)
.+| ..+++|..+.-.+.+||.++.. +..-.|.|-=. ....+.|.+.-. .|++-+++-.|=.+. +.+=
T Consensus 40 ~~P--~~g~~d~~ie~~l~~la~mdsnn~~~~~g~GERE~Rv~s~lv~rrh~~~~HGiGRSGd~~~~QPKAaGssll~~l 117 (501)
T 3hl2_A 40 KCP--ENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKI 117 (501)
T ss_dssp CCC--SSCCCHHHHHHHHHHHHTTBGGGCSSCCCCSSCCCCCSCHHHHHHTTTCCSCBSCSSCTTCCCTTBHHHHHHHHH
T ss_pred CCC--ccCCCHHHHHHHHHHHHhhccCCCcccCCcccchHHHHHHHHHhhccCcccCCCCccccccCCCCccchHHHHHH
Confidence 567 5899999999999999987632 22223455211 346666654332 344445544444443 1111
Q ss_pred HHHHHHHHHHHHHHhcCCCCc-ceeeccchHHHHHHHHHHhhhhcC-CCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 209 RLESLLNFQTMIADLTGLPMS-NASLLDEGTAAAEAMAMCNNIQKG-KKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 209 ~l~~i~e~q~~ia~L~g~~~~-~~sl~~~~ta~~ea~~~a~~~~~~-~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
|-.. .-.++..+ |++.. .+.+.+|+|+++.|+.|+..-..+ ++++||+++++|.|+...+.. .|++.+++
T Consensus 118 tn~l---~ld~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL----~Gl~Pv~V 189 (501)
T 3hl2_A 118 TNSL---VLDIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMIT----AGFEPVVI 189 (501)
T ss_dssp HHHH---HHHHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHH----TTCEEEEE
T ss_pred HHHH---HHHHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHH----cCCeEEEE
Confidence 1111 22456666 99864 466789999999998875421111 249999999999999999864 58888887
Q ss_pred Cc-----------hhhhc-c---CCCEeEEEEEcC-CCC-eeeccHHHHHHHHHhCCcEEEEEecCccccCCC-------
Q 001989 287 DL-----------KDIDY-K---SGDVCGVLVQYP-GTE-GEVLDYGDFIKNAHANGVKVVMATDLLALTILK------- 342 (985)
Q Consensus 287 ~~-----------~~l~~-l---~~~t~~V~v~~p-n~~-G~v~di~~I~~~a~~~galliV~a~~~~lg~l~------- 342 (985)
++ +++++ | +.+..++++++| ++. |.+.||++|+++||++|++++|+ + ++|...
T Consensus 190 ~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVD-e--AhGah~~~~~~lp 266 (501)
T 3hl2_A 190 ENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVN-N--AYGVQSSKCMHLI 266 (501)
T ss_dssp CEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEE-C--TTCTTCHHHHHHH
T ss_pred eeeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEe-C--cchhhhhhhhhhH
Confidence 54 34554 4 223344444454 443 36699999999999999999995 3 333221
Q ss_pred -CCCccc-ceEEEecC-ccccccCCCCCCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCC
Q 001989 343 -PPGELG-ADIVVGSA-QRFGVPMGYGGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATS 418 (985)
Q Consensus 343 -~~~~~G-aDi~v~s~-k~lg~P~~~GGP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~ats 418 (985)
..-++| ||+++.|. |.+..|.+ | |++++++ ++++++-. . | .||.
T Consensus 267 ~sA~~~GrAD~vVqS~HK~llvpIG--G---~ii~~~d~e~l~~~~~-------~------y--------------PGr~ 314 (501)
T 3hl2_A 267 QQGARVGRIDAFVQSLDKNFMVPVG--G---AIIAGFNDSFIQEISK-------M------Y--------------PGRA 314 (501)
T ss_dssp HHHHHHSCCCEEEEEHHHHHCCCSS--C---EEEEESCHHHHHHHHH-------T------S--------------CSCB
T ss_pred HHHHhcCCCcEEEecccccceeecC--c---eEEEeCCHHHHHHHHH-------h------C--------------CCCC
Confidence 112468 99999999 77777753 3 4555553 45544310 0 0 0111
Q ss_pred CccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEcCCCC-cceEEEecC-------C-H
Q 001989 419 NICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQGLPF-FDTVKVKCA-------D-A 485 (985)
Q Consensus 419 ni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~~~~~-~~~~~~~~~-------~-~ 485 (985)
|.++.+.+.++ +..+|.+|++++.++..++++||+++|+++ | -++++.+. .-.+.+... . .
T Consensus 315 ---S~Spsldl~~t--LL~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~g-e~ll~~~~n~is~a~tl~~~~~~~~~~~ 388 (501)
T 3hl2_A 315 ---SASPSLDVLIT--LLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYN-ERLLHTPHNPISLAMTLKTLDEHRDKAV 388 (501)
T ss_dssp ---CSHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CCBCCCTTCSSEEEEECTTSCTTTSCHH
T ss_pred ---CCcHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hhhcCCCCCceeEEEecccccccccccH
Confidence 11334333333 368899999999999999999999999985 4 45554321 113444332 1 5
Q ss_pred HHHHHHHHHcCce----eee--------------------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 486 HAIASAAYKIEMN----LRV--------------------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 486 ~~v~~~L~~~GI~----~~~--------------------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++...|..++|. |.. ..-..+.+......+++|||.|++.|.+
T Consensus 389 t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~ 456 (501)
T 3hl2_A 389 TQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDR 456 (501)
T ss_dssp HHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6788899988873 110 0124588888889999999999999875
No 294
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.69 E-value=1.4e-15 Score=172.88 Aligned_cols=277 Identities=13% Similarity=0.144 Sum_probs=187.6
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---- 288 (985)
+.++++.+|+++|.+ ++.++++||.++++++.+++. ++||+|+++...|+++...++. .|++++.++.
T Consensus 37 ~~~l~~~la~~~~~~--~~~~~~sGt~al~~al~~~~~--~~gd~Vi~~~~~~~~~~~~~~~----~G~~~~~~~~~~~~ 108 (367)
T 3nyt_A 37 VTELEDRLADFVGAK--YCISCANGTDALQIVQMALGV--GPGDEVITPGFTYVATAETVAL----LGAKPVYVDIDPRT 108 (367)
T ss_dssp HHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTC--CTTCEEEEESSSCTHHHHHHHH----TTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhCC--CCcCEEEECCCccHHHHHHHHH----cCCEEEEEecCCcc
Confidence 567889999999987 588899999888877776543 3889999999999999988753 5888888754
Q ss_pred -----hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCC---CcccceEEEec---C
Q 001989 289 -----KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPP---GELGADIVVGS---A 356 (985)
Q Consensus 289 -----~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~---~~~GaDi~v~s---~ 356 (985)
+++++ +++++++|++. |.+|.+.|+++|.++|+++|+++++|+ ..+.|..... +.+| |+++.| .
T Consensus 109 ~~~d~~~l~~~i~~~~~~v~~~--~~~G~~~~~~~i~~la~~~~~~li~D~-a~~~g~~~~~~~~~~~~-di~~~Sf~~~ 184 (367)
T 3nyt_A 109 YNLDPQLLEAAITPRTKAIIPV--SLYGQCADFDAINAIASKYGIPVIEDA-AQSFGASYKGKRSCNLS-TVACTSFFPS 184 (367)
T ss_dssp CSBCGGGTGGGCCTTEEEECCB--CGGGCCCCHHHHHHHHHHTTCCBEEEC-TTTTTCEETTEETTSSS-SEEEEECCTT
T ss_pred CCcCHHHHHHhcCcCCcEEEee--CCccChhhHHHHHHHHHHcCCEEEEEC-ccccCCeECCeeccCCC-CEEEEECCCC
Confidence 34566 78899988844 478999999999999999999999953 4455543222 3444 999999 3
Q ss_pred ccccccCCCCCCcEEEEEEc-hhhHhcCCCc-eeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH
Q 001989 357 QRFGVPMGYGGPHAAFLATS-QEYKRMMPGR-IVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY 434 (985)
Q Consensus 357 k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~-~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~ 434 (985)
|.|+.+ + . +|++.++ +++.+.+... ..|.. ..|.. ...|...- ...+ .+++.
T Consensus 185 K~l~~~-g---~-gg~~~~~~~~l~~~~~~~~~~g~~------~~~~~----------~~~g~~~~--~~~~---~aa~~ 238 (367)
T 3nyt_A 185 APLGCY-G---D-GGAIFTNDDELATAIRQIARHGQD------RRYHH----------IRVGVNSR--LDTL---QAAIL 238 (367)
T ss_dssp SSSCCS-S---C-CEEEEESCHHHHHHHHHHTBTTEE------ETTEE----------CSCCCBCC--CCHH---HHHHH
T ss_pred CcCCCc-C---c-eeEEEeCCHHHHHHHHHHHhcCCC------cCcee----------eccCcCCC--ccHH---HHHHH
Confidence 776431 1 1 4677774 5565444211 11110 00100 00111110 0122 22221
Q ss_pred HHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-----CCcceEEEecCCHHHHHHHHHHcCceeeeec------
Q 001989 435 AVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-----PFFDTVKVKCADAHAIASAAYKIEMNLRVVD------ 503 (985)
Q Consensus 435 l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-----~~~~~~~~~~~~~~~v~~~L~~~GI~~~~~~------ 503 (985)
+.. .+.++++.++..++++++++.|+++| +.+... ..+..+.+..++..++.+.|.++||.++...
T Consensus 239 ~~~--l~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~GI~~~~~~~~~~~~ 315 (367)
T 3nyt_A 239 LPK--LEIFEEEIALRQKVAAEYDLSLKQVG-IGTPFIEVNNISVYAQYTVRMDNRESVQASLKAAGVPTAVHYPIPLNK 315 (367)
T ss_dssp HHH--HHTHHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCTTEECCCSSEEEECSSHHHHHHHHHHHTCCCBCSCSSCGGG
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHhccCC-eeccCCCCCCceeeEEEEEEeCCHHHHHHHHHHCCCceeccCCCcccc
Confidence 122 23567788888999999999999986 665421 1233456666568889999999999654211
Q ss_pred ------------------CCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001989 504 ------------------SNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 504 ------------------~~~lris~t~~~t~edId~li~aL~~~ 530 (985)
...++++++...|++|||++++++.+-
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 316 QPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp SGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred ChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 246899999999999999999999875
No 295
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.69 E-value=4.6e-16 Score=179.92 Aligned_cols=259 Identities=15% Similarity=0.106 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHhCCCcccee--cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCcccH-----------HHHHH
Q 001989 634 FNNLGEWLCTITGFDSFSLQ--PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNP-----------ATAAM 699 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~--~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~-~~Hg~~~-----------~~a~~ 699 (985)
.+++++.+++++|.+.+.++ ++||++|+.+++.++ .+++|+||+++ ..|+.+. ..++.
T Consensus 76 ~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~al--------l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~ 147 (427)
T 3hvy_A 76 RDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGN--------LRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLRE 147 (427)
T ss_dssp HHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHT--------CCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGG
T ss_pred HHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHh--------cCCCCEEEEeCCCCchhHHHHhccccchhhhHHHH
Confidence 56788999999999887553 578888775554433 14789999987 6665544 22345
Q ss_pred CCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEc----C-CCccccccCHHHHHHHHHH--cCCEEEEEcccccc
Q 001989 700 CGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTY----P-STHGVYEEGIDEICKIIHD--NGGQVYMDGANMNA 772 (985)
Q Consensus 700 ~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~----p-n~~G~i~~di~eI~~la~~--~galliVD~a~~~~ 772 (985)
.|++++.++. +++.+|+++|+++++++ ++|++|++++ | |.+|.+. |+++|+++||+ +|++++||+++..+
T Consensus 148 ~G~~~~~v~~-~~~~~d~e~l~~~i~~~-~~tklV~i~~s~gyp~nptg~v~-dl~~i~~ia~~~~~g~~livD~a~~~~ 224 (427)
T 3hvy_A 148 YGVKYKMVDL-KDGKVDINTVKEELKKD-DSIKLIHIQRSTGYGWRKSLRIA-EIAEIIKSIREVNENVIVFVDNCYGEF 224 (427)
T ss_dssp GTCEEEECCC-BTTBCCHHHHHHHHHHC-TTEEEEEEESSCCSSSSCCCCHH-HHHHHHHHHHHHCSSSEEEEECTTCTT
T ss_pred cCCEEEEecC-CCCCcCHHHHHHHhhCC-CCCEEEEEECCCCCCCCccccHH-HHHHHHHHHHHhCCCCEEEEECCcccc
Confidence 7999999998 67899999999999742 5799999999 8 4689888 89999999999 89999999998532
Q ss_pred ccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHH
Q 001989 773 QVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 773 ~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~ 852 (985)
.. ...|..+|+|++++|+||+|+.+ |.|.+|++++++++.+.+..... ..+.+...+.....
T Consensus 225 ~~-~~~p~~~gaDiv~~S~sK~lgg~---g~~~GG~i~~~~~li~~l~~~~~-----------~~~~g~~~~~~~~~--- 286 (427)
T 3hvy_A 225 VE-EKEPTDVGADIIAGSLIKNIGGG---IATTGGYIAGKEEYVTQATFRVT-----------VPGIGGECGSTFGV--- 286 (427)
T ss_dssp TS-SSCGGGGTCSEEEEETTSGGGTT---TCCSCEEEEECHHHHHHHHHHHS-----------CTTTGGGCCCCTTC---
T ss_pred cc-CCCCcccCCeEEEECCccccccc---ccceEEEEEECHHHHHHHHHHhh-----------cCCcccccCCCHHH---
Confidence 21 23566789999999999998521 22777999999877655432100 00111000000110
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~G 931 (985)
++..+.. .+-+..+.++..+++.++++.|++ ++.+ ++++ ....+.+++.+. ++ .......+++.|....
T Consensus 287 ---a~~~~~g--l~~~~~r~~~~~~~a~~la~~L~~~g~~V-~p~~-~~~~~~li~~~~-l~--~~~~~~~f~~~l~~~~ 356 (427)
T 3hvy_A 287 ---MRSLYEG--LFMAPHVTIEAVKGAVFCARIMELAGFDV-LPKY-NDKRTDIIQAIK-FN--DEKKLIDFIKGIQTAS 356 (427)
T ss_dssp ---HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCEE-ESCT-TSCCSSSEEEEE-CS--SHHHHHHHHHHHHHTC
T ss_pred ---HHHHHHh--HhHHHHHHHHHHHHHHHHHHHHHhCCCee-cCCC-CCCCceEEEEEe-CC--CHHHHHHHHHHhcccc
Confidence 1222222 233455677888999999999987 6666 5443 221122233332 11 0123456788887754
No 296
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.68 E-value=5.4e-15 Score=169.27 Aligned_cols=296 Identities=11% Similarity=0.069 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhh----hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI----QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD 287 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~----~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~ 287 (985)
.+.++++.+|+++|.+ +..++.+||.+++.++.+++. ..++||+|+++...|+++..+++. .|.+++.++
T Consensus 35 ~~~~l~~~la~~~~~~--~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~~----~g~~~~~~~ 108 (390)
T 3b8x_A 35 YVKQYETQFAKTFGSK--YAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQ----YGLRVKFVD 108 (390)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHHH----TTCEEEEEC
T ss_pred HHHHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHHHH----cCCEEEEEe
Confidence 4567889999999987 467888888877776666520 023789999999999999998863 588888876
Q ss_pred c---------hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccc--eEEEec
Q 001989 288 L---------KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGA--DIVVGS 355 (985)
Q Consensus 288 ~---------~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~Ga--Di~v~s 355 (985)
. ++|++ ++++|++|++++ ++|...|+++|.++||++|+++++| +.++.|.......+|+ |+.+.+
T Consensus 109 ~~~~~~~~d~~~l~~~i~~~~~~v~~~~--~~g~~~~~~~i~~l~~~~~~~li~D-~a~~~g~~~~~~~~g~~~~~~~~s 185 (390)
T 3b8x_A 109 IDINTLNIDIESLKEAVTDSTKAILTVN--LLGNPNNFDEINKIIGGRDIILLED-NCESMGATFNNKCAGTFGLMGTFS 185 (390)
T ss_dssp BCTTTCSBCHHHHHHHCCTTEEEEEEEC--GGGCCCCHHHHHHHHTTSCCEEEEE-CTTCTTCEETTEETTSSSSEEEEE
T ss_pred cCccccCcCHHHHHHHhCcCCeEEEEEC--CccChhhHHHHHHHHHHcCCEEEEE-CcCcccCEECCcccccccceEEEE
Confidence 4 34555 778899999874 6788899999999999999999995 3556554434445676 555433
Q ss_pred ---CccccccCCCCCCcEEEEEEch-hhHhcCCCc-eeeeeecCCCCcceeeeccc--ccccccccccCCCccchhHHHH
Q 001989 356 ---AQRFGVPMGYGGPHAAFLATSQ-EYKRMMPGR-IVGVSIDSSGKPALRVAMQT--REQHIRRDKATSNICTAQALLA 428 (985)
Q Consensus 356 ---~k~lg~P~~~GGP~~G~l~~~~-~~~~~lp~~-~vG~t~d~~g~~~~~l~l~t--re~~irre~atsni~t~~~l~a 428 (985)
+|+++ +|.| |++++++ ++.+++... ..|+..+......+.+...+ .+...+++....|..+ ..+.+
T Consensus 186 ~~~~k~~~-----~g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~a 258 (390)
T 3b8x_A 186 SFYSNHIA-----TMEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRP-LEMSG 258 (390)
T ss_dssp CCTTSSSC-----SSSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCC-CHHHH
T ss_pred ccCCCCCc-----cCCc-eEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCc-CHHHH
Confidence 35553 2334 8888886 554433211 11210000000000000000 0001111111111111 11211
Q ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC---CcceEEEecC---C--HHHHHHHHHHcCceee
Q 001989 429 NMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP---FFDTVKVKCA---D--AHAIASAAYKIEMNLR 500 (985)
Q Consensus 429 ~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~---~~~~~~~~~~---~--~~~v~~~L~~~GI~~~ 500 (985)
..+ + ..+ +.++++.++..++++++.+.|+++.++++...+ .+..+.+.++ + ..++.+.|.++||.++
T Consensus 259 a~~-l--~~l--~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~ 333 (390)
T 3b8x_A 259 AIG-I--EQL--KKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECR 333 (390)
T ss_dssp HHH-H--HHH--HHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCB
T ss_pred HHH-H--HHH--HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcCcccHHHHHHHHHHCCCCee
Confidence 111 1 111 457788899999999999999998448886431 2233544444 2 8889999999999765
Q ss_pred eec------C-----------------------CeEEEEeccCCCHHHHHHHHHHHh
Q 001989 501 VVD------S-----------------------NTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 501 ~~~------~-----------------------~~lris~t~~~t~edId~li~aL~ 528 (985)
... . +.+|++++..+|++|||+++++|+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 390 (390)
T 3b8x_A 334 PIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVLK 390 (390)
T ss_dssp CSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHTC
T ss_pred eecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhhC
Confidence 311 0 259999999999999999999873
No 297
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.68 E-value=7.1e-15 Score=167.71 Aligned_cols=275 Identities=11% Similarity=0.084 Sum_probs=186.1
Q ss_pred HHHHHHHHHHHHhcC--CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 211 ESLLNFQTMIADLTG--LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
+...++++.+++++| .++.++.+++|+|.++++++.++. ++||+|+++...|+++...++. .|.+++.++.
T Consensus 71 ~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~---~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~~~~ 143 (391)
T 4dq6_A 71 SYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELT---KANDKIMIQEPVYSPFNSVVKN----NNRELIISPL 143 (391)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS---CTTCEEEECSSCCTHHHHHHHH----TTCEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhC---CCCCEEEEcCCCCHHHHHHHHH----cCCeEEeeee
Confidence 344567788899999 667789999999988887776552 3789999999999998888753 5778877654
Q ss_pred h------------hhhc-cCCCEeEEEEEcC-CCCeee---ccHHHHHHHHHhCCcEEEEEecCccccCCC-----CCCc
Q 001989 289 K------------DIDY-KSGDVCGVLVQYP-GTEGEV---LDYGDFIKNAHANGVKVVMATDLLALTILK-----PPGE 346 (985)
Q Consensus 289 ~------------~l~~-l~~~t~~V~v~~p-n~~G~v---~di~~I~~~a~~~galliV~a~~~~lg~l~-----~~~~ 346 (985)
+ ++++ +.+ +++|++.+| |.+|.+ +++++|+++|+++|+++++|. ..+..... +...
T Consensus 144 ~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~g~~~~~~~~ 221 (391)
T 4dq6_A 144 QKLENGNYIMDYEDIENKIKD-VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDE-IHSDIILKKHKHIPMAS 221 (391)
T ss_dssp EECTTSCEECCHHHHHHHCTT-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEEC-TTTTCBCTTCCCCCGGG
T ss_pred eecCCCceEeeHHHHHHHhhc-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeec-cccccccCCCCccCHHH
Confidence 3 4555 666 999999998 789999 789999999999999999953 33322111 1123
Q ss_pred cc-----ceEEEecC-ccccccCCCCCCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 347 LG-----ADIVVGSA-QRFGVPMGYGGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 347 ~G-----aDi~v~s~-k~lg~P~~~GGP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
++ .+++++|. |.++.| |..+|++.+++ ++.+.+... +....+.+
T Consensus 222 ~~~~~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~~~~~~-------------------------~~~~~~~~ 272 (391)
T 4dq6_A 222 ISKEFEKNTITCMAPTKTFNIA----GLQSSYVVLPDEKDYKLLDDA-------------------------FTRIDIKR 272 (391)
T ss_dssp SCHHHHHTEEEEECSHHHHTCG----GGCCEEEECCSHHHHHHHHHH-------------------------HHHTTCCC
T ss_pred cCccccCcEEEEEechhhccCc----ccceEEEEeCCHHHHHHHHHH-------------------------HHhhcCCC
Confidence 33 33888887 888533 33468888775 665544100 00001111
Q ss_pred ccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc-CCCeEEcCCCCcceEEEecC--C--HHHHHHHHHH
Q 001989 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQGLPFFDTVKVKCA--D--AHAIASAAYK 494 (985)
Q Consensus 420 i~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~--~--~~~v~~~L~~ 494 (985)
. +.....+..+++ . .+.+.++++.++..++.+++.+.|++ ++++++..+...-.+.+.++ + ..++.+.|.+
T Consensus 273 ~-~~~~~~a~~~~l--~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 348 (391)
T 4dq6_A 273 N-NCFSLVATEASY--N-NGESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEGTYLLWVDFSALGLSDEELESILVQ 348 (391)
T ss_dssp C-CHHHHHHHHHHH--H-HCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCSBSSEEEEECGGGCCCHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHH--h-chHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCCccEEEEEEhhhcCCCHHHHHHHHHH
Confidence 1 011222222222 2 23445788889999999999999988 53488764321111224443 2 8899999999
Q ss_pred c-Cceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 495 I-EMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 495 ~-GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+ ||.+... ..+.+|++++ +++++|+++++.|.+
T Consensus 349 ~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~ 388 (391)
T 4dq6_A 349 KGKVALNQGNSFGIGGSGYQRINLA--CPRSMLEEALIRIKN 388 (391)
T ss_dssp TTCEECEEGGGGCTTCTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred hCCEEeeCchhhCCCCCCeEEEEEc--CCHHHHHHHHHHHHH
Confidence 8 9988542 1478999998 689999999998863
No 298
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.68 E-value=8.6e-16 Score=176.96 Aligned_cols=220 Identities=16% Similarity=0.107 Sum_probs=153.9
Q ss_pred HHHHHHHHHHhcCCCCcceee-ccchHHHHHHHHHHhhhhcCCCCEEEEcC-CCChhHHHHHH------HhhcCCCeEEE
Q 001989 213 LLNFQTMIADLTGLPMSNASL-LDEGTAAAEAMAMCNNIQKGKKKTFIIAS-NCHPQTIDICI------TRADGFDIKVV 284 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl-~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~-~~H~s~~~~~~------~~a~~~gi~v~ 284 (985)
..++++.+|+++|.+.+.+.. +.+||+++.+++.++ . ++||+||+++ ..|+.+...+. ..++..|++++
T Consensus 61 ~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~al-l--~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~ 137 (409)
T 3jzl_A 61 RDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGI-L--RPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYS 137 (409)
T ss_dssp HHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHH-C--CTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEE
T ss_pred HHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHh-c--CCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEE
Confidence 456778999999998743321 788888877766654 2 3899999998 89988887652 23445799999
Q ss_pred EeCc--------hhhhc-cCCCEeEEEEEc----C-CCCeeeccHHHHHHHHHh--CCcEEEEEecCccccC-CCCCCcc
Q 001989 285 VSDL--------KDIDY-KSGDVCGVLVQY----P-GTEGEVLDYGDFIKNAHA--NGVKVVMATDLLALTI-LKPPGEL 347 (985)
Q Consensus 285 ~v~~--------~~l~~-l~~~t~~V~v~~----p-n~~G~v~di~~I~~~a~~--~galliV~a~~~~lg~-l~~~~~~ 347 (985)
++|. +++++ ++++|++|++++ | |++|.+.|+++|+++||+ +|++++|| +.++.+. ...|.++
T Consensus 138 ~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD-~a~~~~~~~~~p~~~ 216 (409)
T 3jzl_A 138 SVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVD-NCYGEFVEYQEPPEV 216 (409)
T ss_dssp ECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEE-CTTCTTTSSCCSGGG
T ss_pred EeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEe-CCcccccccCCcccc
Confidence 8875 35566 788999999998 8 789999999999999999 99999995 4555554 3467789
Q ss_pred cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHH
Q 001989 348 GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQAL 426 (985)
Q Consensus 348 GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l 426 (985)
|+|++++|. |.|+++ |.|..|++++++++++++..+.. ...+.+..+.+ ....
T Consensus 217 g~Div~~S~sK~lgg~---~~~~GG~v~~~~~li~~l~~~~~-------------------~~~~g~~~g~~----~~~~ 270 (409)
T 3jzl_A 217 GADIIAGSLIKNPGGG---LAKTGGYIAGKEALVDLCGYRLT-------------------TPGIGREAGAS----LYSL 270 (409)
T ss_dssp TCSEEEEETTSGGGTT---TCSSCEEEEECHHHHHHHHHHHS-------------------CTTTGGGCCCC----TTCH
T ss_pred CCeEEEECccccCCcc---CCceEEEEEeCHHHHHHHHHHhc-------------------ccccccccccc----HHHH
Confidence 999999998 877642 22555899999988776521100 00011111110 0111
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc
Q 001989 427 LANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ 470 (985)
Q Consensus 427 ~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~ 470 (985)
+++..+ .+-+..+.++..+++.++++.|+++| +++.
T Consensus 271 ~~~l~g-------l~~~~~r~~~~~~~a~~la~~L~~~g-~~v~ 306 (409)
T 3jzl_A 271 LEMYQG-------FFLAPHVTAQAIKGARFTAAMLAEFG-VEAD 306 (409)
T ss_dssp HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHTT-CEEE
T ss_pred HHHHHH-------HhhHHHHHHHHHHHHHHHHHHHHhCC-Cccc
Confidence 111111 12345677788899999999999998 7775
No 299
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.68 E-value=4.2e-15 Score=172.38 Aligned_cols=145 Identities=14% Similarity=0.160 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHH----HHCCcEEEEE-
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA----AMCGMKIVSV- 707 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a----~~~G~~vv~v- 707 (985)
...++++.+++++|.+.. +.+++|++|+..++.++. .++++||++...|+.+.... +..|++++.+
T Consensus 59 ~~~~l~~~la~~~g~~~~-v~~~sGt~A~~~~l~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 129 (421)
T 2ctz_A 59 TVDVLEKRLAALEGGKAA-LATASGHAAQFLALTTLA--------QAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTS 129 (421)
T ss_dssp HHHHHHHHHHHHHTCSEE-EEESSHHHHHHHHHHHHC--------CTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECC
T ss_pred HHHHHHHHHHHHhCCCce-EEecCHHHHHHHHHHHHh--------CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEEC
Confidence 356888999999998754 666778877755544331 36789999988776654443 6789999999
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccc-cccccCCCCCCccCCc
Q 001989 708 GTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGAN-MNAQVGLTSPGYIGAD 785 (985)
Q Consensus 708 ~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~-~~~~~~l~~pg~~g~D 785 (985)
+.+ |+++|+++|+ ++|++|++++| |.+|.+. |+++|+++|+++|+++++|++| ..+. ...+..+++|
T Consensus 130 ~~~-----d~~~l~~~i~---~~~~~v~~~~~~n~~G~~~-~l~~i~~~a~~~g~~livD~~~~~~g~--~~~~~~~~~D 198 (421)
T 2ctz_A 130 REE-----RPEEFLALTD---EKTRAWWVESIGNPALNIP-DLEALAQAAREKGVALIVDNTFGMGGY--LLRPLAWGAA 198 (421)
T ss_dssp TTC-----CHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHTCEEEEECGGGGGGT--SCCGGGGTCS
T ss_pred CCC-----CHHHHHHhhc---cCCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEECCcccccc--cCCccccCCe
Confidence 764 8999999997 79999999998 5689998 8999999999999999999998 5442 2345567899
Q ss_pred EEEeCCcccccc
Q 001989 786 VCHLNLHKTFCI 797 (985)
Q Consensus 786 i~~~s~hK~l~~ 797 (985)
++++|+||+|+.
T Consensus 199 i~~~s~~K~l~~ 210 (421)
T 2ctz_A 199 LVTHSLTKWVGG 210 (421)
T ss_dssp EEEEETTTTTTC
T ss_pred EEEECCcccccC
Confidence 999999999953
No 300
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.68 E-value=6.7e-15 Score=167.20 Aligned_cols=265 Identities=12% Similarity=0.032 Sum_probs=184.1
Q ss_pred HHHHHHHHh------cCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 215 NFQTMIADL------TGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 215 e~q~~ia~L------~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
++++.+|++ ++.++.++.+++|+++++++++.++. ++||+|++++..|+++...++. .|.+++.++.
T Consensus 73 ~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~---~~gd~Vl~~~~~y~~~~~~~~~----~g~~~~~v~~ 145 (369)
T 3cq5_A 73 ELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFG---GPGRTALGFQPSYSMHPILAKG----THTEFIAVSR 145 (369)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC---STTCEEEEEESSCTHHHHHHHH----TTCEEEEEEC
T ss_pred HHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhc---CCCCEEEEcCCChHHHHHHHHH----cCCEEEEecC
Confidence 466677777 56667788899999988877766542 3789999999999998887653 5777777653
Q ss_pred --------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CC----CCccc-ceE
Q 001989 289 --------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KP----PGELG-ADI 351 (985)
Q Consensus 289 --------~~l~~-l~~-~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~----~~~~G-aDi 351 (985)
+++++ +++ ++++|++.+| |.+|.+.|++++.++++.+++++++| +..+.+.. .+ ...++ .++
T Consensus 146 ~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~D-e~~~~~~~~~~~~~~~~~~~~~~i 224 (369)
T 3cq5_A 146 GADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVD-EAYAEFSPSPSATTLLEKYPTKLV 224 (369)
T ss_dssp CTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEE-CTTGGGCCSCCGGGGTTTCTTTEE
T ss_pred CcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEE-CCchhhcCCcchHHHHhhCCCCEE
Confidence 34555 555 7899999888 67999999999999999999988885 33333222 11 12356 778
Q ss_pred EEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHH
Q 001989 352 VVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANM 430 (985)
Q Consensus 352 ~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~ 430 (985)
+++|. |.|+.| |..+|++++++++.+.+... .. ..+.| .....+..
T Consensus 225 ~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~~~----------~~----------------~~~~~---~~~~~a~~ 271 (369)
T 3cq5_A 225 VSRTMSKAFDFA----GGRLGYFVANPAFIDAVMLV----------RL----------------PYHLS---ALSQAAAI 271 (369)
T ss_dssp EEEESSSTTSCG----GGCCEEEEECTHHHHHHHTT----------SC----------------TTCSC---HHHHHHHH
T ss_pred EEEechHhcCCc----ccceEEEEeCHHHHHHHHHc----------CC----------------CCCCC---HHHHHHHH
Confidence 89987 777532 23469999988876654110 00 00111 11121222
Q ss_pred HHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC-HHHHHHHHHHcCceeeee-cCCeEE
Q 001989 431 AAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-AHAIASAAYKIEMNLRVV-DSNTVT 508 (985)
Q Consensus 431 aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~-~~~v~~~L~~~GI~~~~~-~~~~lr 508 (985)
++ +. ..+.++++.++..++.+++.+.|++.| +++... ...-+.+..+. ..++.+.|.++||.+... .++.+|
T Consensus 272 ~~--l~--~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~iR 345 (369)
T 3cq5_A 272 VA--LR--HSADTLGTVEKLSVERVRVAARLEELG-YAVVPS-ESNFVFFGDFSDQHAAWQAFLDRGVLIRDVGIAGHLR 345 (369)
T ss_dssp HH--HH--THHHHHTHHHHHHHHHHHHHHHHHHHT-CEEECC-SSSEEEEECCSSHHHHHHHHHHTTEECBCCSCTTEEE
T ss_pred HH--hc--CHHHHHHHHHHHHHHHHHHHHHHHhCC-CEECCC-CCeEEEEECCCCHHHHHHHHHHCCEEEEECCCCCeEE
Confidence 22 22 234578888899999999999998876 877632 22234455553 788999999999988653 257899
Q ss_pred EEeccCCCHHHHHHHHHHHhC
Q 001989 509 ASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 509 is~t~~~t~edId~li~aL~~ 529 (985)
++++ |++|+++++++|.+
T Consensus 346 is~~---~~~~i~~~~~~l~~ 363 (369)
T 3cq5_A 346 TTIG---VPEENDAFLDAAAE 363 (369)
T ss_dssp EECC---CHHHHHHHHHHHHH
T ss_pred EEeC---CHHHHHHHHHHHHH
Confidence 9998 89999999999874
No 301
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.68 E-value=4.6e-16 Score=180.64 Aligned_cols=255 Identities=14% Similarity=0.040 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHhCCCccce--ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCcccHHHH----------HHC
Q 001989 634 FNNLGEWLCTITGFDSFSL--QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPATA----------AMC 700 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~--~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~-~~Hg~~~~~a----------~~~ 700 (985)
.+++++++++++|.+...+ +++||++|+.+++.++. .++|+||++. ..|+.+...+ +..
T Consensus 67 ~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~--------~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~ 138 (431)
T 3ht4_A 67 RDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGIL--------RPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEY 138 (431)
T ss_dssp HHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTC--------CTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGG
T ss_pred HHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhC--------CCCCEEEEeCCCCchhHHHHHhhcccccchHHHc
Confidence 5678899999999987532 35688887765554331 4788999987 7787765443 347
Q ss_pred CcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEc----CC-CccccccCHHHHHHHHHH--cCCEEEEEccccccc
Q 001989 701 GMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTY----PS-THGVYEEGIDEICKIIHD--NGGQVYMDGANMNAQ 773 (985)
Q Consensus 701 G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~----pn-~~G~i~~di~eI~~la~~--~galliVD~a~~~~~ 773 (985)
|++++.++++++|.+|+++|+++++ ++|++|++++ |+ .+|... |+++|+++|++ +|+++++|+++....
T Consensus 139 G~~~~~v~~~~~~~~d~e~l~~~l~---~~tk~V~i~~sp~np~~~~~~~~-~l~~i~~la~~~~~~~~livDea~~~~~ 214 (431)
T 3ht4_A 139 NIGYNAVPLTEGGLVDFEAVAAAIH---SNTKMIGIQRSKGYATRPSFTIS-QIKEMIAFVKEIKPDVVVFVDNCYGEFI 214 (431)
T ss_dssp TCEEEECCBCTTSSBCHHHHHHHCC---TTEEEEEEECSCTTSSSCCCCHH-HHHHHHHHHHHHCTTCEEEEECTTCTTS
T ss_pred CCEEEEeCCCCCCCcCHHHHHhhcC---CCCeEEEEECCCCCCCCCcCCHH-HHHHHHHHHHhhCCCCEEEEeCCChhhc
Confidence 9999999998889999999999997 7999999996 43 467676 89999999999 999999999885322
Q ss_pred cCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCC-CCCCcchhhhHH
Q 001989 774 VGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG-TIAAAPWGSALI 852 (985)
Q Consensus 774 ~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~-~i~s~~~g~~~~ 852 (985)
. ...|..+|+|+++.|+||+|+. +++|.+|++++++++.+.+...... .+.+ ....++.....
T Consensus 215 ~-~~~~~~~g~Di~~~S~sK~lgg---~~~~~GG~v~~~~~li~~l~~~~~~-----------~~~g~~~~~~~~~~~~- 278 (431)
T 3ht4_A 215 E-EQEPCHVGADLMAGSLIKNPGG---GIVKTGGYIVGKEQYVEACAYRLTS-----------PGIGAEAGASLYSLQE- 278 (431)
T ss_dssp S-SCCGGGTTCSEEEEETTSGGGT---TTCSSCEEEEECHHHHHHHHHHHSC-----------TTTTTSCSCCCSCSHH-
T ss_pred c-CCCccccCCeEEEcCccccCCC---CCCCceEEEEecHHHHHHHHHHhcc-----------CCcccccCccHHHHHH-
Confidence 1 1356677899999999999862 1235449999998765443211000 0000 00001110111
Q ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceee--EEEEEecCccccCCCCHHHHHHHHHH
Q 001989 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAH--EFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 853 ~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~--~~iv~~~~~~~~~g~~~~~v~~~L~~ 929 (985)
+...+ +.+..+.++..+++.++++.|++ ++.+ ++.+ ....+ .+.+.+.. .....++++.|.+
T Consensus 279 ---~~~~l-----~~~~~~~~~~~~~a~~l~~~L~~~g~~v-~p~~-~~~~~~li~~i~l~~-----~~~~~~~~~~l~~ 343 (431)
T 3ht4_A 279 ---MYQGF-----FLAPHVAGQALKGAIFTAAFLEKLGMNT-SPAW-NAPRTDLIQSVQFDD-----KDRMIAFCQAIQY 343 (431)
T ss_dssp ---HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCCE-ESCT-TSCCSSSCCEEECCC-----HHHHHHHHHHHHH
T ss_pred ---HHhHh-----hhHHHHHHHHHHHHHHHHHHHHhCcCEe-cCCC-CCCCccEEEEEEeCC-----HHHHHHHHHHHHh
Confidence 11111 23345667788899999999987 6766 4332 11111 12333321 1235678888888
Q ss_pred CC
Q 001989 930 YG 931 (985)
Q Consensus 930 ~G 931 (985)
..
T Consensus 344 ~~ 345 (431)
T 3ht4_A 344 AS 345 (431)
T ss_dssp TS
T ss_pred cC
Confidence 64
No 302
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.68 E-value=9e-15 Score=167.46 Aligned_cols=267 Identities=15% Similarity=0.116 Sum_probs=182.1
Q ss_pred HHHHHHHHhc----CC--CCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 215 NFQTMIADLT----GL--PMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 215 e~q~~ia~L~----g~--~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
++++.+|+++ |. ++.++.+++|+|.+++.++.++ . ++||+|++++..|+++...++. .|++++.++.
T Consensus 82 ~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l-~--~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~v~~ 154 (389)
T 1o4s_A 82 ELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMAL-L--DPGDEVIVFSPVWVSYIPQIIL----AGGTVNVVET 154 (389)
T ss_dssp HHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHH-C--CTTCEEEEEESCCTTHHHHHHH----TTCEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHh-C--CCCCEEEEcCCCchhHHHHHHH----cCCEEEEEec
Confidence 3555666665 76 5668989999998888777654 2 3789999999999998887653 5777777653
Q ss_pred ----------hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCCC----CCC----
Q 001989 289 ----------KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILK----PPG---- 345 (985)
Q Consensus 289 ----------~~l~~-l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l~----~~~---- 345 (985)
++|++ +++++++|++.+| |++|.+.| +++|+++|+++|+++++|. ..+.+... +..
T Consensus 155 ~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De-a~~~~~~~g~~~~~~~~~~ 233 (389)
T 1o4s_A 155 FMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDE-VYDSLVYTDEFTSILDVSE 233 (389)
T ss_dssp CGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC-TTTTSBCSSCCCCHHHHCS
T ss_pred CCccCCCCCHHHHHHhcccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEc-cccccccCCCCCCHhhcCC
Confidence 34555 7778999999988 67999865 9999999999999999953 33332221 111
Q ss_pred cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchh
Q 001989 346 ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQ 424 (985)
Q Consensus 346 ~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~ 424 (985)
..+.|++++|. |.|+.| |..+|++++++++.+.+... +...+.+. .
T Consensus 234 ~~~~~i~~~s~sK~~~~~----G~r~G~l~~~~~~~~~l~~~--------------------------~~~~~~~~---~ 280 (389)
T 1o4s_A 234 GFDRIVYINGFSKSHSMT----GWRVGYLISSEKVATAVSKI--------------------------QSHTTSCI---N 280 (389)
T ss_dssp SSTTEEEEEESTTTTTCG----GGCCEEEECCHHHHHHHHHH--------------------------HHHHTCSC---C
T ss_pred CCCcEEEEeechhhcCCc----ccceEEEEeCHHHHHHHHHH--------------------------hhhcccCC---C
Confidence 25789999997 776422 12279999988876654110 00011111 1
Q ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC-CHHHHHHHHH-HcCceeeee
Q 001989 425 ALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA-DAHAIASAAY-KIEMNLRVV 502 (985)
Q Consensus 425 ~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-~~~~v~~~L~-~~GI~~~~~ 502 (985)
.+ +..++. ..+. .+++++.++..++.+++.+.|+++| +++..+....-+.+..+ +..++.++|. ++||.+...
T Consensus 281 ~~-~~~a~~--~~l~-~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g 355 (389)
T 1o4s_A 281 TV-AQYAAL--KALE-VDNSYMVQTFKERKNFVVERLKKMG-VKFVEPEGAFYLFFKVRGDDVKFCERLLEEKKVALVPG 355 (389)
T ss_dssp HH-HHHHHH--HHTT-CCCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCSBSSEEEEECSSCHHHHHHHHHHHHCEECEEG
T ss_pred HH-HHHHHH--HHHh-ccHHHHHHHHHHHHHHHHHHHHhcC-CeeecCCcceEEEEeCCCCHHHHHHHHHHHCCEEEeCc
Confidence 11 112222 2332 3478889999999999999999986 77653211111233443 4788999997 789987543
Q ss_pred ----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 ----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ----~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++.+|++++ +++++|+++++.|.+
T Consensus 356 ~~f~~~~~~Ris~~--~~~~~l~~~l~~l~~ 384 (389)
T 1o4s_A 356 SAFLKPGFVRLSFA--TSIERLTEALDRIED 384 (389)
T ss_dssp GGGTCTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred hhcCCCCeEEEEEe--CCHHHHHHHHHHHHH
Confidence 1478999998 499999999988863
No 303
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.68 E-value=7.6e-16 Score=184.02 Aligned_cols=326 Identities=11% Similarity=0.046 Sum_probs=187.0
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cc---cc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCC
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DS---FS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCG 701 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~---~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G 701 (985)
.|..++.+++.+++.+.++. +. .. +++++|++++..++.++.. ..-..++++|+++++.|..+...++..|
T Consensus 138 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~---~~l~~~gd~Viv~~p~~~~~~~~~~~~g 214 (533)
T 3f6t_A 138 RCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAE---NHLLKKGDKIAINEPIFTPYLRIPELKD 214 (533)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHH---TTSSCTTCEEEEESSCCHHHHTSGGGGG
T ss_pred ccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhh---hhccCCcCEEEEcCCCcHHHHHHHHHcC
Confidence 46556666666666555232 21 23 4445555555443333211 0012467999999987766655567789
Q ss_pred cEEEEEcCC----CCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHH-HcCCEEEEEccccccc
Q 001989 702 MKIVSVGTD----AKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIH-DNGGQVYMDGANMNAQ 773 (985)
Q Consensus 702 ~~vv~v~~d----~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~-~~galliVD~a~~~~~ 773 (985)
++++.++++ .++.+|+++|+++++ +++++|++++|+ ++|.+. .++++|+++|+ ++|+++++|++|....
T Consensus 215 ~~~~~v~~~~~~~~~~~~d~~~l~~~l~---~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~ 291 (533)
T 3f6t_A 215 YELVEVDLHSYEKNDWEIEPNEIEKLKD---PSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFV 291 (533)
T ss_dssp SEEEEECCCEETTTTSEECHHHHHHHSC---TTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGS
T ss_pred CeEEEEEecCCcccCCCCCHHHHHHHhC---CCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccc
Confidence 999999985 347899999999997 799999999994 699986 13558888888 6899999999984211
Q ss_pred cCCCCCC--ccCCcEEEeCCcccccccCCCCCCceEEEEEccc-----ccCcCCCCc-------ccc-CCCC--C-----
Q 001989 774 VGLTSPG--YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-----LAPFLPSHP-------VVS-TGGI--P----- 831 (985)
Q Consensus 774 ~~l~~pg--~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-----l~~~lp~~~-------~g~-~~~~--~----- 831 (985)
....... ..+.++++.|++|+|+.| |.++|+++++++ +...++... ++. +.+. .
T Consensus 292 ~~~~~~~~~~~~~~i~~~S~SK~~g~~----G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~r 367 (533)
T 3f6t_A 292 PNFKSIYSVVPYNTMLVYSYSKLFGCT----GWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDR 367 (533)
T ss_dssp TTCCCHHHHSGGGEEEEEESHHHHTCG----GGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHH
T ss_pred cCccCHhhcCCCCEEEEecCcccCCCc----ccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHH
Confidence 1111111 113458899999998543 567999999876 544442100 000 0000 0
Q ss_pred -----CCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh--------cHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCC
Q 001989 832 -----APEKSQPLGTIAAAPWGSALILPISYTYIAMM--------GSKGLTEASKIAILNANYMAKRLEKHYPILFRGVN 898 (985)
Q Consensus 832 -----~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l--------g~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~ 898 (985)
+..+...+.+.+ ...+. +.+...+..+ ..+.+++..++..++.+++.+.|. +++....+.
T Consensus 368 l~~~~~~~~~~~~~~~~--~~~q~---a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~--~~~~~~~~~ 440 (533)
T 3f6t_A 368 LCADSRSIGLYHTAGLS--TPQQI---MEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ--APKDETDTN 440 (533)
T ss_dssp HHHHHTTTTTGGGCSCC--HHHHH---HHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT--CCCCCSTTB
T ss_pred HHHHHHHHHHhcccCCC--hHHHH---HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC--CCccccCCC
Confidence 000001111111 11121 1111122222 223455556667788888988886 333222222
Q ss_pred CceeeEEEEEecCcc-ccCC----------CCHHHHHHHHH-HCCCccCCCC-CC-CCCEEEEeccCCCCHHHHHHHHcc
Q 001989 899 GTVAHEFIVDLRGLK-NTAG----------IEPEDVAKRLM-DYGFHGPTMS-WP-VPGTLMIEPTESESKSWTGIVMLS 964 (985)
Q Consensus 899 ~~~~~~~iv~~~~~~-~~~g----------~~~~~v~~~L~-~~Gi~~~~~~-~p-~~~~lris~t~~~t~eeId~~~~~ 964 (985)
+..+ +.++++.+. ...+ .+..+++.+|. ++||.+.... +. ..+++|+++.. .+++||++ ++
T Consensus 441 ~g~~--~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a~-~~~e~i~~--~i 515 (533)
T 3f6t_A 441 THYY--SLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQAN-LPTEDYAL--IG 515 (533)
T ss_dssp CCSE--EEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSSTTEEEEESSS-SCHHHHHH--HH
T ss_pred ceEE--EEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEee-CCHHHHHH--HH
Confidence 2332 334443100 0001 24556666655 6799875422 21 25899999854 57999999 78
Q ss_pred CChhHHHHhhc
Q 001989 965 SPSEKKLHRLK 975 (985)
Q Consensus 965 ~~l~~~~~~~~ 975 (985)
+.|++++++++
T Consensus 516 ~~L~~~l~~~~ 526 (533)
T 3f6t_A 516 KQVLELLKEYY 526 (533)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887654
No 304
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.68 E-value=1.5e-14 Score=163.68 Aligned_cols=265 Identities=12% Similarity=0.079 Sum_probs=181.8
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCC-CEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKK-KTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g-~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---- 288 (985)
.++++.+|+++|.++.++.+++|++.+++.++.++. ++| |+|+++...|+.+...++. .|.+++.++.
T Consensus 61 ~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~---~~g~d~Vl~~~p~~~~~~~~~~~----~g~~~~~v~~~~~~ 133 (356)
T 1fg7_A 61 KAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC---EPGKDAILYCPPTYGMYSVSAET----IGVECRTVPTLDNW 133 (356)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC---CTTTCEEEECSSSCTHHHHHHHH----HTCEEEECCCCTTS
T ss_pred HHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHh---CCCCCEEEEeCCChHHHHHHHHH----cCCEEEEeeCCCCC
Confidence 457789999999998899999999988887776652 378 9999999999998888754 4778877754
Q ss_pred ----hhhhc-cCCCEeEEEEEcC-CCCeeeccH---HHHHHHHHhCCcEEEEEecCcc-cc----CCCCCCcccceEEEe
Q 001989 289 ----KDIDY-KSGDVCGVLVQYP-GTEGEVLDY---GDFIKNAHANGVKVVMATDLLA-LT----ILKPPGELGADIVVG 354 (985)
Q Consensus 289 ----~~l~~-l~~~t~~V~v~~p-n~~G~v~di---~~I~~~a~~~galliV~a~~~~-lg----~l~~~~~~GaDi~v~ 354 (985)
+++++ ++ ++++|++++| |.+|.+.|. ++|+++|+ +|+++++|. ..+ ++ ...-...++.|+++.
T Consensus 134 ~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De-~~~~~~~~~~~~~~~~~~~~~i~~~ 210 (356)
T 1fg7_A 134 QLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADE-AYIEFCPQASLAGWLAEYPHLAILR 210 (356)
T ss_dssp CCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEEC-TTGGGSGGGCSGGGTTTCTTEEEEE
T ss_pred CCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEc-cchhhcCCCcHHHHHhhCCCEEEEe
Confidence 34555 66 8999999998 679998765 55555566 899999953 322 22 011113467789998
Q ss_pred cC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH
Q 001989 355 SA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 355 s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~ 433 (985)
|. |.|+.| |..+|++++++++++.+.. .+.+.+ . ..+ +..++.
T Consensus 211 s~sK~~g~~----G~r~G~~~~~~~~~~~l~~----------------------------~~~~~~--~-~~~-~~~a~~ 254 (356)
T 1fg7_A 211 TLSKAFALA----GLRCGFTLANEEVINLLMK----------------------------VIAPYP--L-STP-VADIAA 254 (356)
T ss_dssp ESSSTTCCG----GGCCEEEEECHHHHHHHHH----------------------------HSCSSC--S-CHH-HHHHHH
T ss_pred cchHhhcCc----hhhhEEEEeCHHHHHHHHH----------------------------hcCCCC--C-CHH-HHHHHH
Confidence 87 776432 2336999998887765410 000011 1 111 222222
Q ss_pred HHHHhCcch---HHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCCHHHHHHHHHHcCceeee-ec----CC
Q 001989 434 YAVYHGPEG---LKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNLRV-VD----SN 505 (985)
Q Consensus 434 ~l~~~g~~G---l~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~GI~~~~-~~----~~ 505 (985)
..+...+ +++..++..++.+++.+.|+++|++....+...+-+.++.+++.++.++|.++||.++. -. ++
T Consensus 255 --~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~g~~~~~~~ 332 (356)
T 1fg7_A 255 --QALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFKASSAVFKSLWDQGIILRDQNKQPSLSG 332 (356)
T ss_dssp --HHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEETTHHHHHHHHHHTTEECEECTTSTTCTT
T ss_pred --HHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECCCHHHHHHHHHHCCEEEEECCCCCCCCC
Confidence 2333334 67888888999999999999986543222222223445554577899999999998876 21 36
Q ss_pred eEEEEeccCCCHHHHHHHHHHHhC
Q 001989 506 TVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 506 ~lris~t~~~t~edId~li~aL~~ 529 (985)
.+|++++ +++|+++++++|++
T Consensus 333 ~iRis~~---~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 333 CLRITVG---TREESQRVIDALRA 353 (356)
T ss_dssp EEEEECC---CHHHHHHHHHHHHT
T ss_pred eEEEEeC---CHHHHHHHHHHHHh
Confidence 8999987 68999999999975
No 305
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.67 E-value=2.6e-14 Score=162.57 Aligned_cols=320 Identities=13% Similarity=0.094 Sum_probs=202.0
Q ss_pred HHHHHHHHhcCCCccceecCCCCCCCCCcHHHHHHHHhCC--ccccccCCChhhHhhhHHHHHHHHHHHHHHhc----CC
Q 001989 153 MIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENP--AWYTQYTPYQAEIAQGRLESLLNFQTMIADLT----GL 226 (985)
Q Consensus 153 ~~~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~~--~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~----g~ 226 (985)
+.+...+....+..+.+| +.|.++...|+.+.+++.+.- .....|.+ .+ ...++++.+|+++ |.
T Consensus 13 ~~~~~~~~~~~g~~~idl-~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-----~~----~~~~l~~~ia~~~~~~~g~ 82 (376)
T 2dou_A 13 VDEAKRKARERGVGLIDL-SIGSTDLPPPEAPLKALAEALNDPTTYGYCL-----KS----CTLPFLEEAARWYEGRYGV 82 (376)
T ss_dssp HHHHHHHHHHTTCCCEEC-SSCCCCCCCCHHHHHHHHHHTTCGGGSSCCC-----HH----HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhhccCCCEEec-cCCCCCCCCCHHHHHHHHHHHhCCCcCCCCC-----CC----CCHHHHHHHHHHHHHHhCC
Confidence 334444443334434333 444444445666654544321 11223332 12 2345667777776 87
Q ss_pred C--Cc-ceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-c
Q 001989 227 P--MS-NASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-K 294 (985)
Q Consensus 227 ~--~~-~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--------~~l~~-l 294 (985)
+ +. ++.+++|+|.+++.++.++. ++||+|+++...|+.+...++. .|.+++.++. +++++ +
T Consensus 83 ~~~~~~~v~~~~g~~~a~~~~~~~l~---~~gd~vl~~~p~y~~~~~~~~~----~g~~~~~~~~~~~~~~d~~~l~~~l 155 (376)
T 2dou_A 83 GLDPRREALALIGSQEGLAHLLLALT---EPEDLLLLPEVAYPSYFGAARV----ASLRTFLIPLREDGLADLKAVPEGV 155 (376)
T ss_dssp CCCTTTSEEEESSHHHHHHHHHHHHC---CTTCEEEEESSCCHHHHHHHHH----TTCEEEEECBCTTSSBCGGGSCHHH
T ss_pred CCCCCccEEEcCCcHHHHHHHHHHhc---CCCCEEEECCCCcHhHHHHHHH----cCCEEEEeeCCCCCCCCHHHHHHhh
Confidence 5 34 78899999988877766542 3789999999999998887653 5788887764 34444 5
Q ss_pred CCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCC----CC----CCcccceEEEecC-ccccc
Q 001989 295 SGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL----KP----PGELGADIVVGSA-QRFGV 361 (985)
Q Consensus 295 ~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l----~~----~~~~GaDi~v~s~-k~lg~ 361 (985)
++++++|++++| |.+|.+.| +++|+++|+++|+++++| +..+.... .+ .+..+.|++++|. |.|+.
T Consensus 156 ~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D-e~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 234 (376)
T 2dou_A 156 WREAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHD-NPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNL 234 (376)
T ss_dssp HHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE-CTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTC
T ss_pred ccCceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEE-ccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCC
Confidence 567899999888 67998865 788999999999999995 33332211 01 1234678989887 87753
Q ss_pred cCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhH-HHHHHHHHHHHHhCc
Q 001989 362 PMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQA-LLANMAAMYAVYHGP 440 (985)
Q Consensus 362 P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~-l~a~~aa~~l~~~g~ 440 (985)
| |..+|++++++++++.+... +. ..+ .+++.. ..+..++ +. .+.
T Consensus 235 ~----G~r~G~~~~~~~~~~~l~~~-------------------------~~-~~~--~~~~~~~~~a~~~~--l~-~~~ 279 (376)
T 2dou_A 235 A----GFRLGFALGSEEALARLERV-------------------------KG-VID--FNQYAGVLRMGVEA--LK-TPK 279 (376)
T ss_dssp G----GGCCEEEEECHHHHHHHHHH-------------------------HH-HHC--CCSCHHHHHHHHHH--HT-SCH
T ss_pred h----hheeEEEecCHHHHHHHHHH-------------------------HH-hcc--cCCCHHHHHHHHHH--Hh-CcH
Confidence 2 23468999988877655100 00 000 111111 1121111 12 234
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeee------cCCeEEEEe
Q 001989 441 EGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVV------DSNTVTASF 511 (985)
Q Consensus 441 ~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~------~~~~lris~ 511 (985)
+.++++.++..++.+++.+.|+++ +++..+....-+.+..+. ..++.+.|.++||.+... .++.+|+++
T Consensus 280 ~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~ 357 (376)
T 2dou_A 280 EVVRGYARVYRERALGMAEALKGV--LSLLPPRATMYLWGRLPEGVDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIAL 357 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT--SEECCCCBSSEEEEECCTTCCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--cCccCCCeeEEEEEECCCCCCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEe
Confidence 567888888999999999999886 555432111123345542 678999999999987542 147899999
Q ss_pred ccCCCHHHHHHHHHHHhC
Q 001989 512 DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 512 t~~~t~edId~li~aL~~ 529 (985)
+. ++++|+++++.|.+
T Consensus 358 ~~--~~~~i~~~l~~l~~ 373 (376)
T 2dou_A 358 VR--PLEELLEAAKRIRE 373 (376)
T ss_dssp CS--CHHHHHHHHHHHHH
T ss_pred cC--CHHHHHHHHHHHHH
Confidence 85 89999999998864
No 306
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.67 E-value=1e-15 Score=175.84 Aligned_cols=277 Identities=11% Similarity=0.053 Sum_probs=189.4
Q ss_pred hhHHHHHHHHHHHHHHhcCCCC---cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001989 207 QGRLESLLNFQTMIADLTGLPM---SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~---~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v 283 (985)
.|..+...++++.+++++|.+. .++.+++|+|.+++.++.++ . ++||+|+++...|+++...++. .|.++
T Consensus 78 ~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l-~--~~gd~vl~~~~~~~~~~~~~~~----~g~~~ 150 (407)
T 3nra_A 78 RGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT-V--ARGDKVAIVQPDYFANRKLVEF----FEGEM 150 (407)
T ss_dssp TCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTT-C--CTTCEEEEEESCCTHHHHHHHH----TTCEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHh-C--CCCCEEEEcCCcccchHHHHHH----cCCEE
Confidence 3555666777889999999853 57889999998877766554 2 3889999999999998888754 47777
Q ss_pred EEeCc--------------hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCCC--
Q 001989 284 VVSDL--------------KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILK-- 342 (985)
Q Consensus 284 ~~v~~--------------~~l~~-l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l~-- 342 (985)
+.++. ++|++ +.+++++|++.+| |.+|.+.+ +++|+++|+++|+++++| +.++.+...
T Consensus 151 ~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D-ea~~~~~~~g~ 229 (407)
T 3nra_A 151 VPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIAD-QLYSRLRYAGA 229 (407)
T ss_dssp EEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE-CTTTTSBCTTC
T ss_pred EEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEE-ccccccccCCC
Confidence 76654 34555 6668899999998 77999987 999999999999999995 333321111
Q ss_pred --CC------CcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccc
Q 001989 343 --PP------GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR 413 (985)
Q Consensus 343 --~~------~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irr 413 (985)
.+ ...+.+++++|. |.|+.| |..+|++++++++++.+... ++
T Consensus 230 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~l~~~-------------------------~~ 280 (407)
T 3nra_A 230 SYTHLRAEAAVDAENVVTIMGPSKTESLS----GYRLGVAFGSRAIIARMEKL-------------------------QA 280 (407)
T ss_dssp CCCCGGGCTTSCGGGEEEEECSSSTTCCG----GGCCEEEEECHHHHHHHHHH-------------------------HH
T ss_pred CCCChhhcCcccCCcEEEEeCcccccCCC----eeeEEEEEcCHHHHHHHHHH-------------------------Hh
Confidence 11 236678999997 877532 34568999988877655110 00
Q ss_pred cccCCCccchhHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC--C--HHH
Q 001989 414 DKATSNICTAQALLANMAAMYAVYH--GPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA--D--AHA 487 (985)
Q Consensus 414 e~atsni~t~~~l~a~~aa~~l~~~--g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~--~--~~~ 487 (985)
. ...+++ .+ +..++. ..+ +.+.+++..++..++.+++++.|++++++++..+....-+.+.++ + ..+
T Consensus 281 ~---~~~~~~-~~-~~~a~~--~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (407)
T 3nra_A 281 I---VSLRAA-GY-SQAVLR--GWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAE 353 (407)
T ss_dssp H---HTSSSC-HH-HHGGGG--GTTCCCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCBSSCHHH
T ss_pred h---hccCCC-hH-HHHHHH--HHHhccchHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCCCCCCHHH
Confidence 0 011111 11 111111 222 235578888999999999999999983377653221112223332 2 788
Q ss_pred HHHHHHH-cCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 488 IASAAYK-IEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 488 v~~~L~~-~GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+.|.+ +||.+... ..+.+|++++. |++||+++++.|.+
T Consensus 354 ~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~ 400 (407)
T 3nra_A 354 FVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ--DHEAAVAAARRIVT 400 (407)
T ss_dssp HHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS--CHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC--CHHHHHHHHHHHHH
Confidence 9999975 59987642 24789999984 99999999999874
No 307
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.67 E-value=8.6e-15 Score=165.27 Aligned_cols=262 Identities=15% Similarity=0.161 Sum_probs=180.9
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-----
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----- 288 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----- 288 (985)
.++++.+|+++|.++.++.+++|+|.++++++.++ |+|+++...|+++...++. .|++++.++.
T Consensus 64 ~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~-------d~vi~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~ 132 (361)
T 3ftb_A 64 RRLNKSIENYLKLKDIGIVLGNGASEIIELSISLF-------EKILIIVPSYAEYEINAKK----HGVSVVFSYLDENMC 132 (361)
T ss_dssp HHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTC-------SEEEEEESCCTHHHHHHHH----TTCEEEEEECCTTSC
T ss_pred HHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHc-------CcEEEecCChHHHHHHHHH----cCCeEEEeecCcccC
Confidence 46789999999998888999999997666544322 8999999999998888754 4888887764
Q ss_pred ---hhhhc-cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCC-------CCCCcccceEEE
Q 001989 289 ---KDIDY-KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTIL-------KPPGELGADIVV 353 (985)
Q Consensus 289 ---~~l~~-l~~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l-------~~~~~~GaDi~v 353 (985)
+++++ +++ +++|++.+| |.+|.+. ++++|+++|+++|+++++|. ..+.... ...+..+.++++
T Consensus 133 ~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~i~~ 210 (361)
T 3ftb_A 133 IDYEDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDE-AFIEFTGDPSSSFVGEIKNYSCLFII 210 (361)
T ss_dssp CCHHHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEEC-SSGGGTCCTTSSSGGGTTTCSSEEEE
T ss_pred CCHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEEC-cchhhcCCcccchhHhcccCCCEEEE
Confidence 35666 777 999999998 7899886 47778888889999999953 3331111 112334556778
Q ss_pred ecC-ccccccCCCCCCcEEEEE-EchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHH
Q 001989 354 GSA-QRFGVPMGYGGPHAAFLA-TSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMA 431 (985)
Q Consensus 354 ~s~-k~lg~P~~~GGP~~G~l~-~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~a 431 (985)
+|. |.++.| |-.+|++. .++++.+.+... . ...+.| .+ +..+
T Consensus 211 ~s~sK~~~~~----G~r~g~~~~~~~~~~~~~~~~----------~----------------~~~~~~-----~~-~~~~ 254 (361)
T 3ftb_A 211 RAMTKFFAMP----GIRFGYGITNNKEIAAKIKAK----------Q----------------NPWNIN-----CF-AEMA 254 (361)
T ss_dssp EESSSTTSCG----GGCCEEEEESCHHHHHHHHTT----------S----------------CTTCSC-----HH-HHHH
T ss_pred eeChhhcCCC----CcceeEEEeCCHHHHHHHHhh----------C----------------CCCCCC-----HH-HHHH
Confidence 886 877532 33468877 677766554110 0 001111 11 1111
Q ss_pred HHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeE-EcCCCCcceEEEecCC--HHHHHHHHHHcCceeeee------
Q 001989 432 AMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVE-VQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVV------ 502 (985)
Q Consensus 432 a~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~-~~~~~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~------ 502 (985)
+. ..+-..+.++++.++..++.+++++.|+++++++ +..+ ...-+.+..++ ..++.+.|.++||.+...
T Consensus 255 ~~-~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~ 332 (361)
T 3ftb_A 255 AI-NCLKDTNYIEESLLWIKKERKRFIEELNKIGFIKRVFSP-HANFVLCRLENISGEKLYDSLLKEDIVIRRCCNFIGL 332 (361)
T ss_dssp HH-HTSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECC-SSSEEEEEESSSCHHHHHHHHHTTTEECEECTTSTTC
T ss_pred HH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCC-CCeEEEEEcCCCCHHHHHHHHHHCCeEEeeCccCCCC
Confidence 11 1122345678899999999999999999985487 6532 12234455553 889999999999988642
Q ss_pred cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++.+|++++ +.+|+|+++++|..
T Consensus 333 ~~~~iRis~~---~~~~~~~l~~~l~~ 356 (361)
T 3ftb_A 333 DDSFVRFAIK---DEKKNTKFLRALKG 356 (361)
T ss_dssp CTTEEEEECC---CHHHHHHHHHHHHH
T ss_pred CCCEEEEEcC---CHHHHHHHHHHHHH
Confidence 2578999987 88999999998863
No 308
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.67 E-value=8.3e-16 Score=186.89 Aligned_cols=273 Identities=13% Similarity=0.097 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC---
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD--- 287 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~--- 287 (985)
..+.++|+.+|+++|++.+ +.+.+|+|++..++++++. ++||+||+++.+|.|+..+++. .|.++++++
T Consensus 195 g~i~eaE~~lA~~fGa~~a-~~v~nGts~An~~ai~al~---~pGD~VLv~r~~H~S~~~~l~l----sGa~pv~v~~~~ 266 (715)
T 3n75_A 195 GPHKEAEQYIARVFNADRS-YMVTNGTSTANKIVGMYSA---PAGSTILIDRNCHKSLTHLMMM----SDVTPIYFRPTR 266 (715)
T ss_dssp THHHHHHHHHHHHHTCSEE-EEESSHHHHHHHHHHHHHC---CTTCEEEEESSCCHHHHHHHHH----SCCEEEEECCCB
T ss_pred HHHHHHHHHHHHHhCCCCc-eEECcHHHHHHHHHHHHhC---CCCCEEEECCCccHHHHHHHHH----cCCEEEEEeccc
Confidence 4578899999999999863 2234555677777776652 3899999999999999998753 577887765
Q ss_pred ---------------chhhhc-cC--CCEe---EEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccC-----C
Q 001989 288 ---------------LKDIDY-KS--GDVC---GVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTI-----L 341 (985)
Q Consensus 288 ---------------~~~l~~-l~--~~t~---~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~-----l 341 (985)
+++|++ +. ++++ +|++++||++|.+.|+++|+++|+.++ ++|| +.++.++ +
T Consensus 267 ~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~pn~~G~v~dl~~I~ela~~~~--livD-EAH~~~~~f~~~~ 343 (715)
T 3n75_A 267 NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS--IHFD-SAWVPYTNFSPIY 343 (715)
T ss_dssp CTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESSCTTSEEECHHHHHHHCCCSE--EEEE-CTTCTTGGGSGGG
T ss_pred cccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECCCCCCccCCHHHHHHHhCcCc--EEEc-cccccccccCCcc
Confidence 334555 43 4455 899999999999999999999998763 5674 3444322 1
Q ss_pred C--CCCccc--ceEE---EecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccc
Q 001989 342 K--PPGELG--ADIV---VGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR 413 (985)
Q Consensus 342 ~--~~~~~G--aDi~---v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irr 413 (985)
. .+...| +|++ ++|. |+|++|. ++|+++++++..+.. + +
T Consensus 344 ~~~~al~~g~~aD~vii~~~S~hKtL~glt-----qgs~i~v~~~i~~~~----------------~--------~---- 390 (715)
T 3n75_A 344 EGKCGMSGGRVEGKVIYETQSTHKLLAAFS-----QASMIHVKGDVNEET----------------F--------N---- 390 (715)
T ss_dssp TTSSTTSSSCCTTCEEEEEECHHHHSSCCT-----TCEEEEEESCCCHHH----------------H--------H----
T ss_pred ccccccccCcCCCEEEEEEecccccccCCC-----CeeEEEeCchhhHHH----------------H--------H----
Confidence 1 122334 7876 8887 8776432 458888875411000 0 0
Q ss_pred cccCCCccchhHHHHHHHHHH--HHHhCc-chHHHHHHHHHHHHHHHHHHHhcCCC------eEEcCCC-----------
Q 001989 414 DKATSNICTAQALLANMAAMY--AVYHGP-EGLKTIAQRVHGLAGTFALGLKKLGT------VEVQGLP----------- 473 (985)
Q Consensus 414 e~atsni~t~~~l~a~~aa~~--l~~~g~-~Gl~~i~~~~~~~a~~l~~~L~~~g~------~~~~~~~----------- 473 (985)
++...+.|+++.+.++|++- ..++.. +| +++.++..+++.+++++|+++++ ++++.+.
T Consensus 391 -~~~~~~~STSpsy~~~AsldaA~~~~~~~~g-~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (715)
T 3n75_A 391 -EAYMMHTTTSPHYGIVASTETAAAMMKGNAG-KRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLR 468 (715)
T ss_dssp -HHHHHTSCSSCCHHHHHHHHHHHHHHSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECC
T ss_pred -HHHHhhcCCCchHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccC
Confidence 00001111122223333331 234442 34 55789999999999999987632 3544210
Q ss_pred ----------------Ccc--eEEEecC-----------C--HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHH
Q 001989 474 ----------------FFD--TVKVKCA-----------D--AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDK 522 (985)
Q Consensus 474 ----------------~~~--~~~~~~~-----------~--~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~ 522 (985)
.++ .+++.++ + +.++.+.|+++||.++..+...+++-++..+|++++++
T Consensus 469 ~~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~ 548 (715)
T 3n75_A 469 SDSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALS 548 (715)
T ss_dssp TTCCTTCCTTCCSSSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHHH
T ss_pred cccccccccccccCcccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHH
Confidence 022 2555543 3 57899999999999998888999999999999999999
Q ss_pred HHHHHhC
Q 001989 523 LFIVFAG 529 (985)
Q Consensus 523 li~aL~~ 529 (985)
|+++|.+
T Consensus 549 L~~aL~~ 555 (715)
T 3n75_A 549 LLRALTD 555 (715)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999974
No 309
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.67 E-value=6.2e-15 Score=169.47 Aligned_cols=279 Identities=13% Similarity=0.064 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
...++++.+|+++|.+ +..++.+||.+++.++.+++. ++||+|+++...|+++...++. .|++++.++.
T Consensus 64 ~~~~l~~~la~~~~~~--~~v~~~~Gt~a~~~~l~~~~~--~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~~~~~~~ 135 (399)
T 2oga_A 64 ELEGFEAEFAAYCETD--HAVGVNSGMDALQLALRGLGI--GPGDEVIVPSHTYIASWLAVSA----TGATPVPVEPHED 135 (399)
T ss_dssp HHHHHHHHHHHHTTSS--EEEEESCHHHHHHHHHHHTTC--CTTCEEEEESSSCTHHHHHHHH----TTCEEEEECBCSS
T ss_pred hHHHHHHHHHHHHCCC--eEEEecCHHHHHHHHHHHhCC--CCcCEEEECCCccHHHHHHHHH----CCCEEEEEecCCC
Confidence 3456788999999987 467788888877777666533 3789999999999998887753 5888887754
Q ss_pred ------hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCccc--ceEEEecC---
Q 001989 289 ------KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELG--ADIVVGSA--- 356 (985)
Q Consensus 289 ------~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~G--aDi~v~s~--- 356 (985)
++|++ +++++++|+++ |.+|.+.|+++|.++|+++|+++++| +..+.+.......++ .|+++.|.
T Consensus 136 ~~~~d~~~l~~~i~~~~~~v~~~--n~tG~~~~l~~i~~l~~~~~~~li~D-ea~~~g~~~~~~~~~~~~di~~~S~~~s 212 (399)
T 2oga_A 136 HPTLDPLLVEKAITPRTRALLPV--HLYGHPADMDALRELADRHGLHIVED-AAQAHGARYRGRRIGAGSSVAAFSFYPG 212 (399)
T ss_dssp SSSBCHHHHHHHCCTTEEEECCB--CGGGCCCCHHHHHHHHHHHTCEECEE-CTTCTTCEETTEETTCTTCEEEEECCTT
T ss_pred CCCcCHHHHHHhcCCCCeEEEEe--CCcCCccCHHHHHHHHHHcCCEEEEE-CcccccCccCCeecccccCEEEEeCCCC
Confidence 34555 77889988865 45899999999999999999999995 344554322222345 69999995
Q ss_pred ccccccCCCCCCcEEEEEEc-hhhHhcCCCc-eeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH
Q 001989 357 QRFGVPMGYGGPHAAFLATS-QEYKRMMPGR-IVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY 434 (985)
Q Consensus 357 k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~-~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~ 434 (985)
|.|+.| | + +|++.++ +++.+.+... ..|+. ..|.. ...+...-.+.....+..+++
T Consensus 213 K~~~~~---G-~-~g~~~~~~~~~~~~l~~~~~~g~~------~~~~~----------~~~g~~~~~~~~~~a~~~~~l- 270 (399)
T 2oga_A 213 KNLGCF---G-D-GGAVVTGDPELAERLRMLRNYGSR------QKYSH----------ETKGTNSRLDEMQAAVLRIRL- 270 (399)
T ss_dssp SSSCCS---S-C-CEEEEESCHHHHHHHHHHHBTTCS------STTCC----------CSCCCBCCCCHHHHHHHHHHH-
T ss_pred ccCCcC---C-c-eEEEEeCCHHHHHHHHHHHhcCcc------ccccc----------cccccCCCcCHHHHHHHHHHH-
Confidence 766422 2 2 4677775 6766554211 11110 00100 001111111111111111111
Q ss_pred HHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC-C----cceEEEecCCHHHHHHHHHHcCceeeeec------
Q 001989 435 AVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-F----FDTVKVKCADAHAIASAAYKIEMNLRVVD------ 503 (985)
Q Consensus 435 l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-~----~~~~~~~~~~~~~v~~~L~~~GI~~~~~~------ 503 (985)
+.++++.++..++++++.+.|+++.++++...+ . +..+.+...+..++.+.|.++||.++...
T Consensus 271 ------~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~ 344 (399)
T 2oga_A 271 ------AHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHL 344 (399)
T ss_dssp ------HTHHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEECSSHHHHHHHHHHTTBCCBCSCSSCGGG
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEECCCHHHHHHHHHHCCCceecCCCCcccc
Confidence 235667778888999999999988337764222 1 11244433348889999999999875422
Q ss_pred ---------------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 504 ---------------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 ---------------------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.+|++++.++|++|+++++++|.+
T Consensus 345 ~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~ 391 (399)
T 2oga_A 345 SPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVRE 391 (399)
T ss_dssp SHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHH
T ss_pred chhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHH
Confidence 14699999999999999999999974
No 310
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.67 E-value=5.4e-15 Score=172.22 Aligned_cols=298 Identities=13% Similarity=0.062 Sum_probs=184.1
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh------hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN------IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~------~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~ 285 (985)
...++++.+|+++|.+ ++.++.+||.+++.++.++. ...++||+|+++...|+++...++. .|++++.
T Consensus 63 ~~~~l~~~la~~~g~~--~~i~~~sGt~a~~~al~~l~~~~~~~~~~~~gd~Vi~~~~~~~~~~~~~~~----~g~~~~~ 136 (437)
T 3bb8_A 63 FNDAFEKKLGEYLGVP--YVLTTTSGSSANLLALTALTSPKLGVRALKPGDEVITVAAGFPTTVNPTIQ----NGLIPVF 136 (437)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTCGGGGGGSCCTTCEEEECSSSCHHHHHHHHH----TTCEEEE
T ss_pred HHHHHHHHHHHHHCCC--cEEEeCCHHHHHHHHHHHhhhcccccccCCCcCEEEECCCCcHHHHHHHHH----cCCEEEE
Confidence 4567889999999987 47788899887777766652 0023789999999999999998864 5888887
Q ss_pred eCc---------hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCccc--ceEEE
Q 001989 286 SDL---------KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELG--ADIVV 353 (985)
Q Consensus 286 v~~---------~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~G--aDi~v 353 (985)
++. +++++ ++++|++|++++ +.|...|+++|.++||++|+++++| ...+.|.......+| +|+++
T Consensus 137 v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~--~~g~~~~~~~i~~l~~~~~~~li~D-~a~~~g~~~~~~~~~~~~d~~~ 213 (437)
T 3bb8_A 137 VDVDIPTYNVNASLIEAAVSDKTKAIMIAH--TLGNLFDLAEVRRVADKYNLWLIED-CCDALGSTYDGKMAGTFGDIGT 213 (437)
T ss_dssp CCEETTTTEECGGGHHHHCCTTEEEEEEEC--GGGCCCCHHHHHHHHHHHTCEEEEE-CTTCTTCEETTEETTSSSSEEE
T ss_pred EeccCccCCcCHHHHHHhcCCCCeEEEEeC--CCCChhcHHHHHHHHHHcCCEEEEE-CccccCceECCeecccccCEEE
Confidence 754 34555 778899999876 4677799999999999999999995 345555433334466 89988
Q ss_pred ecC-ccccccCCCCCCcEEEEEEchhhHhc-CCC-ceeeee------ecCCCCcceeeecccccccccc-cccCCCc-cc
Q 001989 354 GSA-QRFGVPMGYGGPHAAFLATSQEYKRM-MPG-RIVGVS------IDSSGKPALRVAMQTREQHIRR-DKATSNI-CT 422 (985)
Q Consensus 354 ~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~-lp~-~~vG~t------~d~~g~~~~~l~l~tre~~irr-e~atsni-~t 422 (985)
.|. |..+.| |+.+|+++++++.+.. ++. +-.|.. .+....+.|...+ ...+.++ +.+|... +.
T Consensus 214 ~s~~~~k~l~----~g~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~ 287 (437)
T 3bb8_A 214 VSFYPAKHIT----MGEGGAVFTQSAELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQL--GSLPFGYDHKYTYSHLGY 287 (437)
T ss_dssp EECSTTSSSC----CSSCEEEEESCHHHHHHHHHHHBTTBCC----------------CC--SCCCTTCCGGGCBCSCCC
T ss_pred EECcCCcCCC----CCCeEEEEeCCHHHHHHHHHHHHhCccccccccccccccccccccc--ccccccccccccccccCc
Confidence 873 333222 2345888888554322 110 000100 0000000011100 0111122 2233211 11
Q ss_pred h---hHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-C-----Ccc--eEEEecC---CHHHH
Q 001989 423 A---QALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-P-----FFD--TVKVKCA---DAHAI 488 (985)
Q Consensus 423 ~---~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~-----~~~--~~~~~~~---~~~~v 488 (985)
+ ..+.+.++ + ..+ +.+++..++..+++++++++|+++.++.++.. + ... .+.+..+ ...++
T Consensus 288 ~~~~~~~~aa~~-l--~~l--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 362 (437)
T 3bb8_A 288 NLKITDMQAACG-L--AQL--ERIEEFVEKRKANFKYLKDALQSCADFIELPEATENSDPSWFGFPITLKEDSGVSRIDL 362 (437)
T ss_dssp BCCCBHHHHHHH-H--HHH--HHHHHHHHHHHHHHHHHHHHGGGGTTTEECCCCCTTEECCCSSEEEEECGGGSSCHHHH
T ss_pred ccCCCHHHHHHH-H--HHH--HHHHHHHHHHHHHHHHHHHHhhccCCccccCCCCCCCceeeEEEEEEECCcCcCcHHHH
Confidence 1 12222111 1 111 23455666668899999999999833665531 1 111 2334433 28899
Q ss_pred HHHHHHcCceeeeec----------------------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 489 ASAAYKIEMNLRVVD----------------------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 489 ~~~L~~~GI~~~~~~----------------------------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.|.++||.++... .+.+|++++..+|++|||+++++|..
T Consensus 363 ~~~L~~~GI~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~i~~~l~~ 431 (437)
T 3bb8_A 363 VKFLDEAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEE 431 (437)
T ss_dssp HHHHHHTTBCCBCCTTSSGGGSGGGSSCCCEECSCCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCceeccCCcccccCchhhccCccccCCCcHHHHHhcCEEEecCCCCCCHHHHHHHHHHHHH
Confidence 999999999765321 02499999999999999999999974
No 311
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.67 E-value=3e-16 Score=185.31 Aligned_cols=292 Identities=11% Similarity=0.011 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCc----ceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhh----cCCC
Q 001989 209 RLESLLNFQTMIADLTGLPMS----NASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRA----DGFD 280 (985)
Q Consensus 209 ~l~~i~e~q~~ia~L~g~~~~----~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a----~~~g 280 (985)
.-+...++++.+++++|++.. ++.+++|+ ++..+++.++ + ++||+|++++..|+++...+.... ...|
T Consensus 88 ~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~an~~~~~al-l--~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G 163 (483)
T 1rv3_A 88 IDELETLCQKRALQAYGLDPQCWGVNVQPYSGS-PANFAVYTAL-V--EPHGRIMGLDLPDGGHLTHGFMTDKKKISATS 163 (483)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-HHHHHHHHHH-T--CTTCEEEEECGGGTCCGGGCCBCSSCBCSHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-HHHHHHHHHh-c--CCCCEEEEecCccCcCcchhhhhcccCccccc
Confidence 345556777999999999863 35555544 6666656665 3 389999999999988765432100 0011
Q ss_pred --eEEEEe---------Cchhhhc-cC-CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC-CCC
Q 001989 281 --IKVVVS---------DLKDIDY-KS-GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPG 345 (985)
Q Consensus 281 --i~v~~v---------~~~~l~~-l~-~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~-~~~ 345 (985)
++++.+ |+++|++ +. +++++|++ ++ |+. .+.|+++|+++|+++|+++++|. .++.|+.. ...
T Consensus 164 ~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~-ah~~g~~~~~~~ 240 (483)
T 1rv3_A 164 IFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADM-AHISGLVVAGVV 240 (483)
T ss_dssp HHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEEC-TTTHHHHHHTSS
T ss_pred ceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEc-cchhcccccCCC
Confidence 344433 3356666 65 78999998 65 555 88899999999999999999953 33433221 111
Q ss_pred cc---cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccc--cccCCC
Q 001989 346 EL---GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR--DKATSN 419 (985)
Q Consensus 346 ~~---GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irr--e~atsn 419 (985)
.+ ++|++++|+ |+|+ ||..|++++++++.. +. +..|.. ..|. +..+-+...+ ..||++
T Consensus 241 ~~p~~~~div~~s~~K~l~------GprgG~i~~~~~~~~-~~-~~~g~~------~~y~--~~~~~~~~~~~~~~g~~~ 304 (483)
T 1rv3_A 241 PSPFEHCHVVTTTTHKTLR------GCRAGMIFYRRGVRS-VD-PKTGKE------ILYN--LESLINSAVFPGLQGGPH 304 (483)
T ss_dssp CCGGGTCSEEEEESSGGGC------CCSCEEEEEECSBCC---------C------CBCC--HHHHHHHHHTTTTCCSCC
T ss_pred CCCCCCCcEEEecCcccCC------CCCceEEEEcchhhh-hc-cccCcc------hhhH--HHHHhhhhcCCcccCCcc
Confidence 22 799999998 7664 344489999876542 22 111110 0011 1000000000 124444
Q ss_pred ccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-CCcceEEEecC--C--HHHHHHHHHH
Q 001989 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCA--D--AHAIASAAYK 494 (985)
Q Consensus 420 i~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~--~--~~~v~~~L~~ 494 (985)
. ..+.++.+++ ......+++++.++..++++++.+.|.++| ++++.+ .....+.+.+. + ..++.+.|.+
T Consensus 305 ~---~~iaal~~Al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~ 378 (483)
T 1rv3_A 305 N---HAIAGVAVAL--KQAMTPEFKEYQRQVVANCRALSAALVELG-YKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEA 378 (483)
T ss_dssp H---HHHHHHHHHH--HHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHH
T ss_pred H---HHHHHHHHHH--HHHhChhHHHHHHHHHHHHHHHHHHHHhcC-CEeccCCCCCceEEEeccCCCCCHHHHHHHHHh
Confidence 3 3444555554 455556889999999999999999999997 998743 11122334432 2 7788899999
Q ss_pred cCceee----ee-----cCCeEEEEeccCCC----HHHHHHHHHHHhC
Q 001989 495 IEMNLR----VV-----DSNTVTASFDETTT----LEDVDKLFIVFAG 529 (985)
Q Consensus 495 ~GI~~~----~~-----~~~~lris~t~~~t----~edId~li~aL~~ 529 (985)
.||.+. +. ..+.+|+++..++| ++|+++++++|..
T Consensus 379 ~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~ 426 (483)
T 1rv3_A 379 CSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHR 426 (483)
T ss_dssp TTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHH
Confidence 999876 21 24689999998888 9999999999874
No 312
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.67 E-value=1.7e-14 Score=166.43 Aligned_cols=269 Identities=13% Similarity=0.094 Sum_probs=179.7
Q ss_pred HHHHHHHh----cCC--CCc-ceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC-
Q 001989 216 FQTMIADL----TGL--PMS-NASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD- 287 (985)
Q Consensus 216 ~q~~ia~L----~g~--~~~-~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~- 287 (985)
+++.+|++ +|. ++. ++.+++|+|.+++.++.++ . ++||+|+++...|+++...++. .|++++.++
T Consensus 67 l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~-~--~~gd~Vl~~~~~y~~~~~~~~~----~g~~~~~v~~ 139 (411)
T 2o0r_A 67 LRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGL-V--EPGSEVLLIEPFYDSYSPVVAM----AGAHRVTVPL 139 (411)
T ss_dssp HHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHH-C--CTTCEEEEEESCCTTHHHHHHH----TTCEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHh-c--CCCCEEEEeCCCcHhHHHHHHH----cCCEEEEeec
Confidence 34455554 474 455 7889999998888776654 2 3789999999999998877643 466766654
Q ss_pred ----------chhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCCC-----C----
Q 001989 288 ----------LKDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILK-----P---- 343 (985)
Q Consensus 288 ----------~~~l~~-l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l~-----~---- 343 (985)
+++|++ +++++++|++++| |++|.+.| +++|+++|+++|+++++|. ..+.+... +
T Consensus 140 ~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~g~~~~~~~~~ 218 (411)
T 2o0r_A 140 VPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDE-VYEHLVFDHARHLPLAGF 218 (411)
T ss_dssp EEETTEEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC-TTTTCBCTTCCCCCGGGS
T ss_pred cccccCCCCCHHHHHHhhccCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEc-cccccccCCCCCcChhhc
Confidence 345666 7788999999988 78999865 6999999999999999953 33322111 1
Q ss_pred CCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccc
Q 001989 344 PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT 422 (985)
Q Consensus 344 ~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t 422 (985)
+..++.|++++|. |.|+.| |--+|++++++++++.+.... . ....+.|.
T Consensus 219 ~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~~~~----------~--------------~~~~~~~~-- 268 (411)
T 2o0r_A 219 DGMAERTITISSAAKMFNCT----GWKIGWACGPAELIAGVRAAK----------Q--------------YLSYVGGA-- 268 (411)
T ss_dssp TTTGGGEEEEEEHHHHTTCT----TTCEEEEECCHHHHHHHHHHH----------H--------------HHTSCCCT--
T ss_pred cCCCCCEEEEeechhhcCCc----cceEEEEeeCHHHHHHHHHHH----------h--------------hccCCCCh--
Confidence 1136889999998 766422 123799999888776541100 0 00011111
Q ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC-----CHHHHHHHHH-HcC
Q 001989 423 AQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA-----DAHAIASAAY-KIE 496 (985)
Q Consensus 423 ~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-----~~~~v~~~L~-~~G 496 (985)
....++.+++ .. +.+.++++.++..++.+++.+.|++.| +++..+....-+.+..+ +..++.++|. ++|
T Consensus 269 -~~~~a~~~~l--~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~g 343 (411)
T 2o0r_A 269 -PFQPAVALAL--DT-EDAWVAALRNSLRARRDRLAAGLTEIG-FAVHDSYGTYFLCADPRPLGYDDSTEFCAALPEKVG 343 (411)
T ss_dssp -THHHHHHHHH--HH-CHHHHHHHHHHHHHHHHHHHHHHHHHT-CEECCCCBSSEEEEECGGGTCCCHHHHHHHHHHHHS
T ss_pred -HHHHHHHHHH--hC-ChHHHHHHHHHHHHHHHHHHHHHHHcC-CEecCCCeeEEEEEecCCCCCCCHHHHHHHHHHhCC
Confidence 1222222222 22 356788899999999999999999886 88764321112334443 2678888886 579
Q ss_pred ceeeee-----------------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 497 MNLRVV-----------------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 497 I~~~~~-----------------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
|.+... ..+.+|+++. ++++||+++++.|.+
T Consensus 344 i~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~ 391 (411)
T 2o0r_A 344 VAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLDEAIRRLSV 391 (411)
T ss_dssp EECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHHHHHHHHGG
T ss_pred EEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 987431 1357999986 489999999999974
No 313
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.67 E-value=2.3e-16 Score=183.26 Aligned_cols=293 Identities=11% Similarity=0.052 Sum_probs=172.8
Q ss_pred HHHHHHHHHh----CCCccceecCcHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCC---------
Q 001989 636 NLGEWLCTIT----GFDSFSLQPNAGA-AGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCG--------- 701 (985)
Q Consensus 636 e~~~~la~l~----G~~~~~~~~~sGa-~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G--------- 701 (985)
++++.+++++ +.+...+.+++|+ ++. ..+ ..+. .++|+|+++.+.|..+...++..|
T Consensus 102 ~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al-~~l---~~l~-----~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~ 172 (432)
T 3ei9_A 102 PLRAAIAKTFYGGLGIGDDDVFVSDGAKCDI-SRL---QVMF-----GSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDV 172 (432)
T ss_dssp HHHHHHHHHHHTTTTCCGGGEEEESCHHHHH-HHH---HHHH-----CTTCCEEEEESCCTHHHHHHHHHTCSCCEETTT
T ss_pred HHHHHHHHHHHccCCCCcceEEECCChHHHH-HHH---HHHc-----CCCCEEEEeCCCCHHHHHHHHHcCCcccccccc
Confidence 4455555554 6666555544444 444 222 2222 367899999888877766666555
Q ss_pred ---cEEEEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccc-
Q 001989 702 ---MKIVSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNA- 772 (985)
Q Consensus 702 ---~~vv~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~- 772 (985)
.+++.+|++.+ ...|++. .+++++|++++| |++|.+. .++++|+++|+++|+++++|++|...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~ 244 (432)
T 3ei9_A 173 QKYGNIEYMRCTPENGFFPDLST--------VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYM 244 (432)
T ss_dssp TEETTCEEEECCGGGTTSCCGGG--------CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGC
T ss_pred cccCceEEeccCcccCCcCChhh--------CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhc
Confidence 36788888653 2344322 167889999999 5789875 25788888899999999999998522
Q ss_pred ccCCC-C----CCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcch
Q 001989 773 QVGLT-S----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 773 ~~~l~-~----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~ 847 (985)
.++.. . ++..+.++++.|++|+|+. .|.++|++++++++...-....... ........+.+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~----~G~r~G~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----- 311 (432)
T 3ei9_A 245 SDDNPRSIFEIPGAEEVAMETASFSNYAGF----TGVRLGWTVIPKKLLYSDGFPVAKD----FNRIICTCFNGA----- 311 (432)
T ss_dssp CSSCCSSGGGSTTGGGTEEEEEESHHHHCT----TTTCCEEEECCTTCBCTTSCBHHHH----HHHHHHHSCCCS-----
T ss_pred cCCCCCChhhcCCCCCeEEEEecchhccCC----cccceEEEEEChHHhhcchHHHHHH----HHHHhccccCCC-----
Confidence 11100 0 1223457889999999964 3678999998876621100000000 000000001111
Q ss_pred hhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHH
Q 001989 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 848 g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~ 926 (985)
+.....++.+++...+.+.+.+..++..++++++.+.|++ ++.+.. +. +..+ +.+.++ +.+..++.+.
T Consensus 312 -~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~-~~~~--~~~~~~------~~~~~~~~~~ 380 (432)
T 3ei9_A 312 -SNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLGYDVYG-GK-NAPY--VWVHFP------NQSSWDVFAE 380 (432)
T ss_dssp -CHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE-CS-SSSE--EEEECT------TSCHHHHHHH
T ss_pred -CHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCCceecC-CC-cceE--EEEECC------CCCHHHHHHH
Confidence 1122222223332223344566677788899999999987 555432 22 2222 345654 4567888888
Q ss_pred HHHC-CCccCCC-CC-C-CCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 927 LMDY-GFHGPTM-SW-P-VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 927 L~~~-Gi~~~~~-~~-p-~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
|.++ ||.+... .+ + ..+.+||++ ..++++|++ .++.|++--..
T Consensus 381 ll~~~gv~v~~g~~f~~~~~~~iRis~--~~~~e~l~~--~l~rl~~~~~~ 427 (432)
T 3ei9_A 381 ILEKTHVVTTPGSGFGPGGEGFVRVSA--FGHRENILE--ACRRFKQLYKH 427 (432)
T ss_dssp HHHHHCEECEEGGGGCGGGTTEEEEEC--CSCHHHHHH--HHHHHHHHHTT
T ss_pred HHHHCCEEEeCchHhCCCCCCEEEEEe--cCCHHHHHH--HHHHHHHHhhh
Confidence 8765 9987532 22 1 258999997 569999999 66666655443
No 314
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.66 E-value=6.4e-16 Score=178.95 Aligned_cols=273 Identities=14% Similarity=0.109 Sum_probs=167.4
Q ss_pred eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC--CCCCCCCHHHHHHHHHhcCC
Q 001989 652 LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT--DAKGNINIEELRKAAEANRD 729 (985)
Q Consensus 652 ~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~--d~~g~iD~e~L~~~i~~~~~ 729 (985)
+++++|++|+..++..+. .. .++|+|+++++.|..+...++..|++++.+|+ ++++.+|+++|++++++.++
T Consensus 121 ~~t~G~t~al~~~~~~~~-~~-----~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 194 (420)
T 4f4e_A 121 AQALGGTGALKIGADFLR-TL-----NPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEP 194 (420)
T ss_dssp EEEEHHHHHHHHHHHHHH-HH-----CTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCCT
T ss_pred EECCccHHHHHHHHHHHH-Hh-----CCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCCC
Confidence 455666666654422211 11 36789999988887777778889999999998 34688999999999986556
Q ss_pred CEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccccCCCC----------CCccCCcEEEeCCccccc
Q 001989 730 NLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVGLTS----------PGYIGADVCHLNLHKTFC 796 (985)
Q Consensus 730 ~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~~l~~----------pg~~g~Di~~~s~hK~l~ 796 (985)
+++++++++| |++|.+. .++++|+++|+++|+++++|+++.. + .+.. ++..+.++++.|++|+|+
T Consensus 195 ~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~-~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 272 (420)
T 4f4e_A 195 GTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQG-F-GESIEADAAAVRLFAAANLNVFVSSSFSKSFS 272 (420)
T ss_dssp TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTT-S-SSCTTGGGHHHHHHHHTTCCEEEEEECTTTTT
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcccccc-c-cCCcchhhHHHHHHHhcCCCEEEEEeCCccCc
Confidence 7899999988 5799884 2578999999999999999998731 1 1110 112345688889999986
Q ss_pred ccCCCCCCceEEEEE---cccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh-----cHHHH
Q 001989 797 IPHGGGGPGMGPIGV---KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM-----GSKGL 868 (985)
Q Consensus 797 ~p~g~GGPg~G~i~~---~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l-----g~eGl 868 (985)
+| |.++|++++ ++++...+....... ....+++.+. .++ .++..++... ..+.+
T Consensus 273 ~~----G~RiG~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~--~~~----~~~~~~l~~~~l~~~~~~~~ 334 (420)
T 4f4e_A 273 LY----GERVGALSIITDSKDEAARVLSQLKRV--------IRTNYSNPPT--HGG----AIVAAVLASPELRASWVQEL 334 (420)
T ss_dssp CG----GGCEEEEEEECSSHHHHHHHHHHHHHH--------HHTTTSSCCS--HHH----HHHHHHHHCHHHHHHHHHHH
T ss_pred Cc----CCCcEEEEEEcCCHHHHHHHHHHHHHH--------HhcccCCCCH--HHH----HHHHHHhcCHHHHHHHHHHH
Confidence 43 677999864 223222110000000 0001112111 111 1111222211 12345
Q ss_pred HHHHHHHHHHHHHHHHHhhccC---CeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEE
Q 001989 869 TEASKIAILNANYMAKRLEKHY---PILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTL 945 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~g~---~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~l 945 (985)
++..++..++++++.+.|++.. .+.+..+.+..+ ++ + +.+.+.+.+.|.++||.+.. ..
T Consensus 335 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~---~~-~-------~~~~~~~~~~l~~~gI~v~~-------~~ 396 (420)
T 4f4e_A 335 GEMRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMF---SY-S-------GLTSAQVDRLREEFGIYAVS-------TG 396 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSSE---EE-C-------CCCHHHHHHHHHHHCEECCT-------TS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCceeECCCccEE---EE-e-------CCCHHHHHHHHHhCCEEecC-------CC
Confidence 6666777888899999998621 221111112222 11 1 24567777888888998743 13
Q ss_pred EEeccCCCCHHHHHHHHccCChhHHH
Q 001989 946 MIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 946 ris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
|+++.. .+.++|++ +++.|++++
T Consensus 397 Ris~~~-~~~~~i~~--~~~~l~~~l 419 (420)
T 4f4e_A 397 RICVAA-LNTRNLDV--VANAIAAVL 419 (420)
T ss_dssp EEEGGG-CCTTTHHH--HHHHHHHHH
T ss_pred eEEEec-CCHHHHHH--HHHHHHHHh
Confidence 888864 46677999 777777664
No 315
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.66 E-value=2.4e-14 Score=165.97 Aligned_cols=267 Identities=10% Similarity=0.002 Sum_probs=179.7
Q ss_pred HHHHHHHh----cCC--CCc-ceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 216 FQTMIADL----TGL--PMS-NASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 216 ~q~~ia~L----~g~--~~~-~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
+++.+|++ +|. ++. ++.+++|+|.++++++.++. ++||+|+++...|+.+...++. .|.+++.++.
T Consensus 82 l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~---~~gd~Vl~~~p~y~~~~~~~~~----~g~~~~~~~~ 154 (429)
T 1yiz_A 82 LVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHV---DEGDEVIIIEPFFDCYEPMVKA----AGGIPRFIPL 154 (429)
T ss_dssp HHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC---CTTCEEEEEESCCTTHHHHHHH----TTCEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhc---CCCCEEEEcCCCchhHHHHHHH----cCCEEEEEeC
Confidence 33444444 474 556 78899999988887776542 3789999999999998887653 4777766543
Q ss_pred ------------------hhhhc-cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCC----
Q 001989 289 ------------------KDIDY-KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTIL---- 341 (985)
Q Consensus 289 ------------------~~l~~-l~~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l---- 341 (985)
++|++ +++++++|++++| |.+|.+. ++++|+++|+++|+++++|. ..+....
T Consensus 155 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~g~~ 233 (429)
T 1yiz_A 155 KPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDE-VYEHMVFEPFE 233 (429)
T ss_dssp BCCCSSSSEEGGGCBCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC-TTTTCBCTTSC
T ss_pred CcccccccccccCcccCHHHHHHHhccCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEec-cccccccCCCC
Confidence 34555 7788999999988 7899987 59999999999999999953 3321111
Q ss_pred -CC----CCcccceEEEecC-ccccccCCCCCCc--EEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccc
Q 001989 342 -KP----PGELGADIVVGSA-QRFGVPMGYGGPH--AAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR 413 (985)
Q Consensus 342 -~~----~~~~GaDi~v~s~-k~lg~P~~~GGP~--~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irr 413 (985)
.+ ++.++.|+++.+. |.|+ +|| +|++++++++++.+...
T Consensus 234 ~~~~~~~~~~~~~~~~~~s~sK~~~------~~G~r~G~~~~~~~~~~~l~~~--------------------------- 280 (429)
T 1yiz_A 234 HIRICTLPGMWERTITIGSAGKTFS------LTGWKIGWAYGPEALLKNLQMV--------------------------- 280 (429)
T ss_dssp CCCGGGSTTTGGGEEEEEEHHHHHT------CGGGCCEEEESCHHHHHHHHHH---------------------------
T ss_pred CcChhhccCCcCceEEEecchhccC------CCCcceEEEEeCHHHHHHHHHH---------------------------
Confidence 01 1257899999998 7664 244 79999988877654100
Q ss_pred cccCCCccchhH-HHHHHHHHHHHHh----C--cchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC---
Q 001989 414 DKATSNICTAQA-LLANMAAMYAVYH----G--PEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA--- 483 (985)
Q Consensus 414 e~atsni~t~~~-l~a~~aa~~l~~~----g--~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~--- 483 (985)
+.....+.+.. ..+..++ +... + .+.++++.++..++.+++.+.|+++| +++..+....-+.++++
T Consensus 281 -~~~~~~~~~~~~~~a~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~ 356 (429)
T 1yiz_A 281 -HQNCVYTCATPIQEAIAVG--FETELKRLKSPECYFNSISGELMAKRDYMASFLAEVG-MNPTVPQGGYFMVADWSSLD 356 (429)
T ss_dssp -HHTTTCCCCHHHHHHHHHH--HHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHT-CEEEECSBSSEEEEECCSSC
T ss_pred -HhhcccCCChHHHHHHHHH--HhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCcceEEEEEccccc
Confidence 00001111122 2222222 2331 3 55688899999999999999999886 87653211112333432
Q ss_pred -----------C-HHHHHHHHH-HcCceeeee---c--------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 484 -----------D-AHAIASAAY-KIEMNLRVV---D--------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 484 -----------~-~~~v~~~L~-~~GI~~~~~---~--------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. ..++.++|. ++||.+... . ++.+|+++. ++++||+++++.|.+
T Consensus 357 ~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~i~~~l~~l~~ 424 (429)
T 1yiz_A 357 SKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KKDENLQKAAEILRK 424 (429)
T ss_dssp TTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred ccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 2 567888886 789987532 1 478999998 489999999999874
No 316
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.66 E-value=5.8e-16 Score=181.60 Aligned_cols=163 Identities=19% Similarity=0.206 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH----HHHCCcEEEEEc
Q 001989 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVG 708 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~----a~~~G~~vv~v~ 708 (985)
..+++++++++++|.+. .+.+++|++|+.++ ++ . ..++++||+++..|+.+... ++..|++++.+|
T Consensus 134 ~~~~l~~~la~~~g~~~-~i~~~sGt~al~~~---l~-~-----~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~ 203 (464)
T 1ibj_A 134 TRDALESLLAKLDKADR-AFCFTSGMAALSAV---TH-L-----IKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVN 203 (464)
T ss_dssp HHHHHHHHHHHHHTCSE-EEEESSHHHHHHHH---HT-T-----SCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEEC
T ss_pred HHHHHHHHHHHHhCCCe-EEEECCHHHHHHHH---HH-H-----hCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeC
Confidence 46688999999999874 45567777765332 22 1 24788999988877665432 356799999999
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEE
Q 001989 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~ 787 (985)
.+ |+++|+++++ ++|++|++++| |++|.+. |+++|+++|+++|+++++|++|..+ .+..|..+++|++
T Consensus 204 ~~-----d~~~l~~~i~---~~tk~v~l~~p~NptG~v~-~l~~i~~la~~~gi~livDea~~~g--~~~~~~~~~~div 272 (464)
T 1ibj_A 204 TT-----KLDEVAAAIG---PQTKLVWLESPTNPRQQIS-DIRKISEMAHAQGALVLVDNSIMSP--VLSRPLELGADIV 272 (464)
T ss_dssp TT-----SHHHHHHHCC---SSEEEEEECSSCTTTCCCC-CHHHHHHHHHTTTCEEEEECTTTCT--TTCCGGGTTCSEE
T ss_pred CC-----CHHHHHHHhc---cCceEEEEeCCCCCCCEee-cHHHHHHHHHHcCCEEEEECCCccc--ccCChhhcCCEEE
Confidence 74 8999999997 78999999999 4699998 8999999999999999999998533 2234556789999
Q ss_pred EeCCcccccccCCCCCCceEEEEEcc-cccCcC
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFL 819 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~l 819 (985)
+.|+||+|+.| +|..+|++++++ ++.+.+
T Consensus 273 ~~S~sK~~~g~---~Gl~~G~l~~~~~~l~~~l 302 (464)
T 1ibj_A 273 MHSATKFIAGH---SDVMAGVLAVKGEKLAKEV 302 (464)
T ss_dssp EEETTTTTTCS---SCCCCEEEEECSHHHHHHH
T ss_pred EECCcccccCC---CCCcEEEEEEChHHHHHHH
Confidence 99999998532 233458999885 555443
No 317
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.66 E-value=5.8e-15 Score=169.60 Aligned_cols=293 Identities=12% Similarity=0.011 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHHHhcCCCC-cceee-ccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHH-HHHHhhcCCCeEEEEe
Q 001989 210 LESLLNFQTMIADLTGLPM-SNASL-LDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTID-ICITRADGFDIKVVVS 286 (985)
Q Consensus 210 l~~i~e~q~~ia~L~g~~~-~~~sl-~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~-~~~~~a~~~gi~v~~v 286 (985)
.+.+.++++.+++++|.+. .++.+ ++|+|.++++++.++ .. +| .++++...|..... ....+ ..|.+++.+
T Consensus 77 ~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l-~~--~g-v~~v~~~~~~~~~~~~~~~~--~~g~~~~~v 150 (398)
T 2fyf_A 77 KNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGL-ID--KR-SLHLTYGEFSAKFASAVSKN--PFVGEPIII 150 (398)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHT-CS--SC-EEEEECSHHHHHHHHHHHHC--TTSCCCEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHh-cC--CC-eEEEeCCHHHHHHHHHHHHh--CCCCceEEE
Confidence 4667789999999999984 47777 899998888777665 22 44 34456666643322 22221 226666666
Q ss_pred Cchh--h-hc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-cccc
Q 001989 287 DLKD--I-DY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFG 360 (985)
Q Consensus 287 ~~~~--l-~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg 360 (985)
+.++ . .. ++++|++|++.+| |.+|.+.|+++|.++ +|+++++|. ..+.+....+ -.++|++++++ |.++
T Consensus 151 ~~~~g~~~~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~-a~~~~~~~~~-~~~~di~~~s~sK~~~ 225 (398)
T 2fyf_A 151 TSDPGSAPEPQTDPSVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDA-TSGAGGLPVD-IAETDAYYFAPQKNFA 225 (398)
T ss_dssp ECCTTCCCCCCCCTTCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEEC-TTTTTTSCCC-GGGCSEEEECTTSTTC
T ss_pred ecCCCCCCCccccCCCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEe-ccccCCcccC-cccCcEEEEecCcccC
Confidence 5431 1 11 5678999999887 789999999999887 799999953 4454433211 12589999998 7664
Q ss_pred ccCCCCCCcEEEEEEchhhHhcCCCcee-eeeecCCCCcceeeecccccccc--cccccCCCccchhHHHHHHHHHHHHH
Q 001989 361 VPMGYGGPHAAFLATSQEYKRMMPGRIV-GVSIDSSGKPALRVAMQTREQHI--RRDKATSNICTAQALLANMAAMYAVY 437 (985)
Q Consensus 361 ~P~~~GGP~~G~l~~~~~~~~~lp~~~v-G~t~d~~g~~~~~l~l~tre~~i--rre~atsni~t~~~l~a~~aa~~l~~ 437 (985)
.| +++|++++++++++++..... |. ..+.| +......+.. .+..+|+|+ ....++.+++ .+
T Consensus 226 ~~-----gg~g~l~~~~~~~~~l~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~t~~~---~~~~a~~~al--~~ 289 (398)
T 2fyf_A 226 SD-----GGLWLAIMSPAALSRIEAIAATGR-----WVPDF-LSLPIAVENSLKNQTYNTPAI---ATLALLAEQI--DW 289 (398)
T ss_dssp SC-----SSEEEEEECHHHHHHHHHHHHTTC-----CCCGG-GCHHHHHHHHTTTCCSSCCCH---HHHHHHHHHH--HH
T ss_pred CC-----CceEEEEECHHHHHHhhcccccCC-----CCCcE-EehHHHhhhcccCCCCCCCCH---HHHHHHHHHH--HH
Confidence 32 258999999988766510000 00 00000 0000000000 011133333 3344444444 44
Q ss_pred hCcch-HHHHHHHHHHHHHHHHHHHhcCCCeEEcC-CC--Ccc-eEEEecC-C--HHHHHHHHHHcCceeeee----cCC
Q 001989 438 HGPEG-LKTIAQRVHGLAGTFALGLKKLGTVEVQG-LP--FFD-TVKVKCA-D--AHAIASAAYKIEMNLRVV----DSN 505 (985)
Q Consensus 438 ~g~~G-l~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~~--~~~-~~~~~~~-~--~~~v~~~L~~~GI~~~~~----~~~ 505 (985)
+..+| ++++.++..++++++.+.|++++++++.. .+ ..+ .+.+..+ + +.++.+.|.++||.++.- ..+
T Consensus 290 ~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~ 369 (398)
T 2fyf_A 290 LVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDVDAGTVAKILRANGIVDTEPYRKLGRN 369 (398)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTTSCHHHHHHHHHHTTCBCCSCCTTTCSS
T ss_pred HHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCCCCCHHHHHHHHHHCCcEEecCcccCCCC
Confidence 44556 89999999999999999999983398874 22 233 4556654 2 789999999999988532 247
Q ss_pred eEEEEeccCCCHHHHHHHHHHHhC
Q 001989 506 TVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 506 ~lris~t~~~t~edId~li~aL~~ 529 (985)
.+|+|++.++|++|+++++++|++
T Consensus 370 ~iRis~~~~~t~e~i~~~~~~l~~ 393 (398)
T 2fyf_A 370 QLRVAMFPAVEPDDVSALTECVDW 393 (398)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999874
No 318
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.66 E-value=1.1e-15 Score=178.73 Aligned_cols=299 Identities=15% Similarity=0.199 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCC-cccHHHHHHCCcEEEEEcCCC-
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAH-GTNPATAAMCGMKIVSVGTDA- 711 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~H-g~~~~~a~~~G~~vv~v~~d~- 711 (985)
..++++.+++++|.+. .+++++|++|++.++.++. .++| |++...| +++...+...|++++.+++++
T Consensus 77 ~~~l~~~la~~~~~~~-~~~~~~gt~a~~~al~~l~--------~~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~ 145 (456)
T 2ez2_A 77 FYHLERTVQELFGFKH-IVPTHQGRGAENLLSQLAI--------KPGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEA 145 (456)
T ss_dssp HHHHHHHHHHHHCCSE-EEEESSHHHHHHHHHHHHC--------CTTC--EEEESSCCHHHHHHHHHTTCEEEECBCGGG
T ss_pred HHHHHHHHHHHhCCCc-EEEeCCcHHHHHHHHHHhC--------CCCC--EeccccccchhHHHHHHcCCEEEEeccccc
Confidence 4578889999999874 4566778887765554431 3567 5545455 776677788999999998863
Q ss_pred ---------CCCCCHHHHHHHHHhcC-CCEEEEEEEcC-C-Ccccccc--CHHHHHHHHHHcCCEEEEEccccccc----
Q 001989 712 ---------KGNINIEELRKAAEANR-DNLSTLMVTYP-S-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ---- 773 (985)
Q Consensus 712 ---------~g~iD~e~L~~~i~~~~-~~t~~Vvv~~p-n-~~G~i~~--di~eI~~la~~~galliVD~a~~~~~---- 773 (985)
++.+|+++|++++++.. +++++|++++| | .+|.+.+ ++++|+++|+++|+++|+|++|..+.
T Consensus 146 ~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~ 225 (456)
T 2ez2_A 146 HDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFI 225 (456)
T ss_dssp GCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHH
T ss_pred ccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccc
Confidence 26789999999997321 23489999988 4 6898751 39999999999999999999986420
Q ss_pred ----cCCC-CCC-------ccCCcEEEeCCcccccccCCCCCCceEEEEE-cccccCcCCCC-ccccCCCCCCCCCCCCC
Q 001989 774 ----VGLT-SPG-------YIGADVCHLNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSH-PVVSTGGIPAPEKSQPL 839 (985)
Q Consensus 774 ----~~l~-~pg-------~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~-~~~l~~~lp~~-~~g~~~~~~~~~~~~~~ 839 (985)
..+. .+- ....|++++|+||+++ .|.+|++++ ++++.+.+... ..+. + . ...
T Consensus 226 ~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~------~~~gG~~~~~~~~~~~~~~~~~~~~~-~------~-~~~ 291 (456)
T 2ez2_A 226 KEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCL------VNIGGFLCMNDDEMFSSAKELVVVYE-G------M-PSY 291 (456)
T ss_dssp HHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC------CSSCEEEEESCHHHHHHHHHHHHHHT-C------C-TTT
T ss_pred cccccccCCcchhhhhhhhcccCCEEEEeCcccCC------CCceeEEEECCHHHHHHHHHHHhhcc-C------c-ccc
Confidence 1111 110 1236999888888753 224688888 45554332110 0000 0 0 000
Q ss_pred CCCCCcchhhhHHHHH-HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCC
Q 001989 840 GTIAAAPWGSALILPI-SYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAG 917 (985)
Q Consensus 840 ~~i~s~~~g~~~~~~~-a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g 917 (985)
.+.++ . .+.+ +.+.+..+. .+..++..++.+++.+.|++ ++.+.. +.+..+ +.+.+..+. .+
T Consensus 292 ~~~~~----~--~~~a~a~~~~~~~~----~~~~~~~~~~~~~l~~~L~~~g~~~~~--p~~~~~--~~~~~~~~~--~~ 355 (456)
T 2ez2_A 292 GGLAG----R--DMEAMAIGLREAMQ----YEYIEHRVKQVRYLGDKLKAAGVPIVE--PVGGHA--VFLDARRFC--EH 355 (456)
T ss_dssp TTCCH----H--HHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHHHHTTCCBCS--SCCSSE--EEEEHHHHT--TT
T ss_pred cCcch----h--HHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHhcCCCcccc--CCCceE--EEEEhHHhc--CC
Confidence 11111 1 1111 333333332 23444556677888888876 454422 222222 334432000 02
Q ss_pred CCHHHH-----HHHH-HHCCCccC--CC-C-----------CCCCCEEEEeccCC-CCHHHHHHHHccCChhHHHHhhc
Q 001989 918 IEPEDV-----AKRL-MDYGFHGP--TM-S-----------WPVPGTLMIEPTES-ESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 918 ~~~~~v-----~~~L-~~~Gi~~~--~~-~-----------~p~~~~lris~t~~-~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
.+..++ +++| .++||.+. .. . .+..+.+||+++.. +|++||++ +++.|++++++.+
T Consensus 356 ~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~--~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 356 LTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDV--VADGIIKLYQHKE 432 (456)
T ss_dssp SCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHH--HHHHHHHHHHTGG
T ss_pred CChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHH--HHHHHHHHHhhhh
Confidence 233344 7777 57788642 11 0 11237899999987 89999999 8889998887654
No 319
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.66 E-value=2.3e-15 Score=176.66 Aligned_cols=305 Identities=16% Similarity=0.186 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCE---EEEcCCCC-cccHHHHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNV---CIIPVSAH-GTNPATAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~---IIv~~~~H-g~~~~~a~~~G~~vv~v~~ 709 (985)
..++++++++++|.+. .+++++|++|++.++.+++.+... +|++ ||++ ..| +.+.......|.+++.++.
T Consensus 78 ~~~l~~~la~~~~~~~-v~~t~ggt~A~~~al~~~~~~~~~----~Gd~~~~viv~-~~~~~~~~~~~~~~g~~~~~~~~ 151 (467)
T 1ax4_A 78 YYDLKDKAKELFNYDY-IIPAHQGRGAENILFPVLLKYKQK----EGKAKNPVFIS-NFHFDTTAAHVELNGCKAINIVT 151 (467)
T ss_dssp HHHHHHHHHHHHCCCE-EEEESSHHHHHHHHHHHHHHHHHH----TTCCSSCEEEE-SSCCHHHHHHHHHTTCEEEECBC
T ss_pred HHHHHHHHHHHcCCCc-EEEcCCcHHHHHHHHHHHHHhhcc----CCCccceEEEe-ccccchhhHHHhccCCceecccc
Confidence 4477889999998764 355677888887777766543211 4566 8887 445 4445556778998887653
Q ss_pred C----------CCCCCCHHHHHHHHHhcC-CCEEEEEEEcC-CCc-cccc--cCHHHHHHHHHHcCCEEEEEccccc---
Q 001989 710 D----------AKGNINIEELRKAAEANR-DNLSTLMVTYP-STH-GVYE--EGIDEICKIIHDNGGQVYMDGANMN--- 771 (985)
Q Consensus 710 d----------~~g~iD~e~L~~~i~~~~-~~t~~Vvv~~p-n~~-G~i~--~di~eI~~la~~~galliVD~a~~~--- 771 (985)
+ .++.+|+++|+++|++++ ++|++|++++| |++ |.+. .++++|+++|+++|+++|+|+++..
T Consensus 152 ~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~ 231 (467)
T 1ax4_A 152 EKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENA 231 (467)
T ss_dssp GGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHH
T ss_pred cccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcc
Confidence 2 146789999999998432 37999999998 466 6653 2688999999999999999998753
Q ss_pred --------cccCCCCCCc------cCCcEEEeCCcccccccCCCCCCceEEEEEc-c-cccCcCCCCc--cccCCCCCCC
Q 001989 772 --------AQVGLTSPGY------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVK-K-HLAPFLPSHP--VVSTGGIPAP 833 (985)
Q Consensus 772 --------~~~~l~~pg~------~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~-~l~~~lp~~~--~g~~~~~~~~ 833 (985)
+..+. .+.. ..+|++++++||+++. |.+|+++.+ + ++.+.+.... .+..
T Consensus 232 ~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~s~sK~~g~------~~Gg~~~~~d~~~l~~~~~~~~~~~~~~------ 298 (467)
T 1ax4_A 232 YFIKARDPKYKNA-TIKEVIFDMYKYADALTMSAKKDPLL------NIGGLVAIRDNEEIFTLARQRCVPMEGF------ 298 (467)
T ss_dssp HHHHHHCGGGTTC-CHHHHHHHHGGGCSEEEEETTSTTCC------SSCEEEEESSCHHHHHHHHHHHHHHTCS------
T ss_pred hhccccccccCCC-chhhhhhhhccccceEEEeccccCCC------CcceEEEeCCHHHHHHHHHhhccccccc------
Confidence 11111 1112 2479999999998853 323777777 5 5543321000 0000
Q ss_pred CCCCCCCCCCCcchhhhHHHHHH-HHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecC
Q 001989 834 EKSQPLGTIAAAPWGSALILPIS-YTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRG 911 (985)
Q Consensus 834 ~~~~~~~~i~s~~~g~~~~~~~a-~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~ 911 (985)
.. .+. .......+ .+.+..+..+ +..++..++++++.+.|++ ++.+. .+.+.. .+.+++..
T Consensus 299 -~~--~~~-------~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~~~--~~~~~~~~ 361 (467)
T 1ax4_A 299 -VT--YGG-------LAGRDMAAMVQGLEEGTEE---EYLHYRIGQVKYLGDRLREAGIPIQ--YPTGGH--AVFVDCKK 361 (467)
T ss_dssp -TT--TTT-------CCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHHHTTCCBC--SSCCSS--EEEEESTT
T ss_pred -cc--cCC-------ccchHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHhCCCCcc--cCCCce--EEEEehhh
Confidence 00 001 11111111 1123322211 1223344677889999976 45443 222222 23344110
Q ss_pred c---cccCCCCHHHHHHHH-HHCCCccCCCC------CC--------CCCEEEEecc-CCCCHHHHHHHHccCChhHHHH
Q 001989 912 L---KNTAGIEPEDVAKRL-MDYGFHGPTMS------WP--------VPGTLMIEPT-ESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 912 ~---~~~~g~~~~~v~~~L-~~~Gi~~~~~~------~p--------~~~~lris~t-~~~t~eeId~~~~~~~l~~~~~ 972 (985)
+ ....+.+..+++++| .++||.+.... .| ..+.+|++++ ..+|++|||+ +++.|+++++
T Consensus 362 ~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~--~~~~l~~~~~ 439 (467)
T 1ax4_A 362 LVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDY--IADALIGLKE 439 (467)
T ss_dssp TCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHH--HHHHHHTTHH
T ss_pred hccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHHH--HHHHHHHHHH
Confidence 0 000123567899999 88899864310 01 1278999999 4599999999 7788888877
Q ss_pred hhcc
Q 001989 973 RLKM 976 (985)
Q Consensus 973 ~~~~ 976 (985)
+++.
T Consensus 440 ~~~~ 443 (467)
T 1ax4_A 440 KFAT 443 (467)
T ss_dssp HHTT
T ss_pred hhhc
Confidence 6543
No 320
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.66 E-value=9.1e-16 Score=177.00 Aligned_cols=301 Identities=12% Similarity=0.106 Sum_probs=176.2
Q ss_pred hhHHHHHHHHHHHHHHHhCC--Cccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCC-----EEEEc-CCCCcccHHHHH
Q 001989 628 QGYQEMFNNLGEWLCTITGF--DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRN-----VCIIP-VSAHGTNPATAA 698 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G~--~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~-----~IIv~-~~~Hg~~~~~a~ 698 (985)
+|..++.+.+.+++.+.+|. +... +++++|++|+..++.++. .+++ +|+++ .+.|..+...+.
T Consensus 75 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~--------~~gd~~~~~~vi~~~~p~~~~~~~~~~ 146 (417)
T 3g7q_A 75 QGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFA--------GRRADGSTKKVLFPLAPEYIGYADSGL 146 (417)
T ss_dssp TSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS--------BC----CCBEEEESSCCCHHHHHC---
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHc--------CCCccCCcceEEEeCCCccccchhhcc
Confidence 56666665566666555554 3444 455666666644443331 2333 88887 654433322221
Q ss_pred ------HCCcEEEEEcCCC-CCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEc
Q 001989 699 ------MCGMKIVSVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDG 767 (985)
Q Consensus 699 ------~~G~~vv~v~~d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d---i~eI~~la~~~galliVD~ 767 (985)
..+..+..++.+. ++.+|+++|+ ++ +++++|++++| |++|.+. + +++|+++|+++|+++|+|+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~---~~~~~v~~~~p~NptG~~~-~~~~~~~l~~~a~~~~~~li~De 220 (417)
T 3g7q_A 147 EDDLFVSARPNIELLPEGQFKYHVDFEHLH--IG---EETGMICVSRPTNPTGNVI-TDEELMKLDRLANQHNIPLVIDN 220 (417)
T ss_dssp --CCEEECCCEEEEEGGGEEEEECCGGGCC--CC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCCEEEEC
T ss_pred chhhhccccCcccccCCcccccccCHHHhc--cc---cCceEEEECCCCCCCCCcc-CHHHHHHHHHHHHHcCCEEEEeC
Confidence 1344565565432 3468999988 54 78999999999 5799986 5 8999999999999999999
Q ss_pred cccccccCC----CCCCccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCC
Q 001989 768 ANMNAQVGL----TSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIA 843 (985)
Q Consensus 768 a~~~~~~~l----~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~ 843 (985)
++.....+. ..+...+.++++.|++| ++. +|.++|++++++++.+.+...... . +.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK-~~~----~G~r~G~~~~~~~~~~~~~~~~~~------------~--~~~ 281 (417)
T 3g7q_A 221 AYGVPFPGIIFSEARPLWNPNIILCMSLSK-LGL----PGSRCGIIIANDKTITAIANMNGI------------I--SLA 281 (417)
T ss_dssp TTCTTTTCCBCSCCCCCCCTTEEEEEESGG-GTC----TTSCCEEEECCHHHHHHHHHHHHH------------H--CCC
T ss_pred CCccccccccccccccCCCCCEEEEEechh-ccC----CCcceEEEEeCHHHHHHHHHhhcc------------e--eeC
Confidence 985311111 12333467888999999 433 356799999887766544211000 0 011
Q ss_pred CcchhhhHHHHHHHHHHHHhcHHH-HHH-HHHHHHHHHHHHHHHhhccC---CeeecCCCCceeeEEEEEecCccccCCC
Q 001989 844 AAPWGSALILPISYTYIAMMGSKG-LTE-ASKIAILNANYMAKRLEKHY---PILFRGVNGTVAHEFIVDLRGLKNTAGI 918 (985)
Q Consensus 844 s~~~g~~~~~~~a~a~l~~lg~eG-l~~-~~~~~~~~a~~l~~~L~~g~---~l~~~~~~~~~~~~~iv~~~~~~~~~g~ 918 (985)
++. ....++.+++....... +.+ ..+...++.+++.+.|++.+ .+.+..+.+..+ +.+.++. .+.
T Consensus 282 ~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~--~~~~~~~----~~~ 351 (417)
T 3g7q_A 282 PGG----MGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIF--LWLWFKD----LPI 351 (417)
T ss_dssp CCS----HHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSSE--EEEECTT----CSS
T ss_pred CCc----HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcceE--EEEEcCC----CCC
Confidence 111 11222233343222111 111 23344556677777776521 232222222222 3455541 146
Q ss_pred CHHHHHHHHHHCCCccCCCC-C-C-C-------CCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 919 EPEDVAKRLMDYGFHGPTMS-W-P-V-------PGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 919 ~~~~v~~~L~~~Gi~~~~~~-~-p-~-------~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
+..++.+.|.++||.+.... + + . .+++||+++. +++||++ +++.|+++++++.
T Consensus 352 ~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~~~~i~~--~~~~l~~~l~~~~ 414 (417)
T 3g7q_A 352 TTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--EPDKIEA--GVKILAEEIERAW 414 (417)
T ss_dssp CHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--CHHHHHH--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC--CHHHHHH--HHHHHHHHHHHHH
Confidence 78899999999999875321 1 1 1 4689999985 9999999 8889999887654
No 321
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.66 E-value=4e-15 Score=172.67 Aligned_cols=143 Identities=15% Similarity=0.204 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH----HHHHCCcEEEEEcC
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~----~a~~~G~~vv~v~~ 709 (985)
..++++++++++|.+. .+.+++|++|+..+++++. +++|+||+++..|+.... .+...|++++.++.
T Consensus 84 ~~~le~~lA~l~g~~~-~v~~~sG~~Ai~~al~al~--------~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~ 154 (430)
T 3ri6_A 84 VEDLEQRLKNLTGALG-VLALGSGMAAISTAILTLA--------RAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDV 154 (430)
T ss_dssp HHHHHHHHHHHHTCSE-EEEESCHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECT
T ss_pred HHHHHHHHHHHHCCCc-EEEECCHHHHHHHHHHHHh--------CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCC
Confidence 5688999999999876 4556788877655544431 478999998887776554 45678999999997
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEEE
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVCH 788 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~~ 788 (985)
+ |+++|+++++ ++|++|++++| |++|.+. |+++|+++|+++|+++++|+++.. +.+..|..+|+|+++
T Consensus 155 ~-----d~~~l~~ai~---~~t~~v~~e~p~NptG~~~-dl~~i~~la~~~g~~livD~a~~~--~~~~~~~~~g~div~ 223 (430)
T 3ri6_A 155 M-----DSLAVEHACD---ETTKLLFLETISNPQLQVA-DLEALSKVVHAKGIPLVVDTTMTP--PYLLEAKRLGVDIEV 223 (430)
T ss_dssp T-----CHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHTTTCCEEEECTTSC--TTTCCGGGGTCSEEE
T ss_pred C-----CHHHHHHhhC---CCCeEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCcc--cccCChHHcCCEEEE
Confidence 5 8999999997 79999999999 5799998 899999999999999999999853 334567788999999
Q ss_pred eCCccccc
Q 001989 789 LNLHKTFC 796 (985)
Q Consensus 789 ~s~hK~l~ 796 (985)
.|++|+|+
T Consensus 224 ~S~sK~l~ 231 (430)
T 3ri6_A 224 LSSTKFIS 231 (430)
T ss_dssp EECCCEEE
T ss_pred ECCccccc
Confidence 99999994
No 322
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.66 E-value=5.6e-16 Score=173.69 Aligned_cols=267 Identities=13% Similarity=0.094 Sum_probs=177.4
Q ss_pred HHHHHHHHHHhC---CCccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC
Q 001989 635 NNLGEWLCTITG---FDSFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD 710 (985)
Q Consensus 635 ~e~~~~la~l~G---~~~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d 710 (985)
.++++.++++++ .+...+ +.++|++++. .+++.+ +++|+++ +.|..+...++..|++++.+|.+
T Consensus 59 ~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~---~~~~~~--------gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~ 126 (335)
T 1uu1_A 59 EELIEKILSYLDTDFLSKNNVSVGNGADEIIY---VMMLMF--------DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLT 126 (335)
T ss_dssp HHHHHHHHHHHTCSSCCGGGEEEESSHHHHHH---HHHHHS--------SEEEECS-SSCHHHHHHHHHHTCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCCCHHHEEEcCChHHHHH---HHHHHh--------CCcEEEC-CCcHHHHHHHHHcCCeEEEeccC
Confidence 478889999998 665444 4455555553 333321 4789998 87766666677889999999987
Q ss_pred CCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEcccccccc-C-CCCCCccCCcEE
Q 001989 711 AKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV-G-LTSPGYIGADVC 787 (985)
Q Consensus 711 ~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~~-~-l~~pg~~g~Di~ 787 (985)
+++.+|+++| +++++|++++|+ ++|.+. +.+++.++++..| ++++|+++..... . +...+..+.+++
T Consensus 127 ~~~~~d~~~l--------~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~ 196 (335)
T 1uu1_A 127 KDLRIPEVNV--------GEGDVVFIPNPNNPTGHVF-EREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAV 196 (335)
T ss_dssp TTSCCCCCCC--------CTTEEEEEESSCTTTCCCC-CHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEE
T ss_pred CCCCCCHHHc--------CCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEE
Confidence 7778888776 357889989995 699998 8999999999989 9999999852111 1 111233456789
Q ss_pred EeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
+.|++|+|+. .|.++|++++++++.+.+.... .+.+ . +.....++.+++.. .+.
T Consensus 197 ~~s~sK~~g~----~G~r~G~~~~~~~~~~~l~~~~--------------~~~~--~----~~~~~~~~~~~l~~--~~~ 250 (335)
T 1uu1_A 197 IRTFSKAFSL----AAQRVGYVVASEKFIDAYNRVR--------------LPFN--V----SYVSQMFAKVALDH--REI 250 (335)
T ss_dssp EEESTTTTTC----GGGCCEEEEECHHHHHHHHHHS--------------CTTC--S----CHHHHHHHHHHHHT--HHH
T ss_pred EecchhhcCC----cccCeEEEEeCHHHHHHHHHhc--------------CCCC--c----CHHHHHHHHHHhCC--HHH
Confidence 9999999853 3567899999877654432100 0001 1 11222223334443 245
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEE
Q 001989 868 LTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLM 946 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lr 946 (985)
+.+..++..++++++.+.|++ ++.+ . ++.+. + +.+.++ +.+..++.+.|.++||.+.. ..+++|
T Consensus 251 ~~~~~~~~~~~~~~l~~~L~~~g~~~-~-~~~~~-~--~~~~~~------~~~~~~~~~~l~~~gi~v~~----~~~~iR 315 (335)
T 1uu1_A 251 FEERTKFIVEERERMKSALREMGYRI-T-DSRGN-F--VFVFME------KEEKERLLEHLRTKNVAVRS----FREGVR 315 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCB-C-CCCSS-E--EEEECC------THHHHHHHHHHHHHTEEEEE----ETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCcEE-c-CCCCe-E--EEEECC------CCCHHHHHHHHHHCCEEEEE----CCCeEE
Confidence 666777788889999999987 4543 2 22222 2 345553 22467899999999998754 247999
Q ss_pred EeccCCCCHHHHHHHHccCChhH
Q 001989 947 IEPTESESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 947 is~t~~~t~eeId~~~~~~~l~~ 969 (985)
|++ .+.+|+++ +++.|++
T Consensus 316 is~---~~~~~i~~--~~~~l~~ 333 (335)
T 1uu1_A 316 ITI---GKREENDM--ILRELEV 333 (335)
T ss_dssp EEC---CCHHHHHH--HHHHHHC
T ss_pred EEe---CCHHHHHH--HHHHHHh
Confidence 998 45789999 5555543
No 323
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.66 E-value=1.1e-15 Score=174.44 Aligned_cols=283 Identities=17% Similarity=0.170 Sum_probs=169.2
Q ss_pred HHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHH---HHHHCCcEEEEEcC
Q 001989 635 NNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA---TAAMCGMKIVSVGT 709 (985)
Q Consensus 635 ~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~---~a~~~G~~vv~v~~ 709 (985)
+++++.+++++|.+ ...+++++|++|+..++. .+ ++|+||++...|+.+.. .++..|++++.+
T Consensus 61 ~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~---~~-------~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v-- 128 (374)
T 2aeu_A 61 EKVNEYGLKHLGGDENDKCVGFNRTSSAILATIL---AL-------KPKKVIHYLPELPGHPSIERSCKIVNAKYFES-- 128 (374)
T ss_dssp HHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHH---HH-------CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE--
T ss_pred HHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHH---hC-------CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe--
Confidence 56777788999983 334666788877754443 22 46889998775554433 466789999888
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEE-EEEEcCC-Ccc-ccccCHHHHHHHHHHcCCEEEEEcccccccc-CCCC--CCccC
Q 001989 710 DAKGNINIEELRKAAEANRDNLST-LMVTYPS-THG-VYEEGIDEICKIIHDNGGQVYMDGANMNAQV-GLTS--PGYIG 783 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~-Vvv~~pn-~~G-~i~~di~eI~~la~~~galliVD~a~~~~~~-~l~~--pg~~g 783 (985)
.|+++|+++ + +++++ |++++|+ ++| ... |+++|.++|+++|+++++|+++..... .... +..++
T Consensus 129 -----~d~~~l~~~-~---~~~~~~v~~~~p~nptG~~~~-~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 198 (374)
T 2aeu_A 129 -----DKVGEILNK-I---DKDTLVIITGSTMDLKVIELE-NFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLG 198 (374)
T ss_dssp -----SCHHHHHTT-C---CTTEEEEEECBCTTSCBCCHH-HHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHT
T ss_pred -----CCHHHHHhc-C---CCccEEEEEccCCCCCCCCcc-cHHHHHHHHHHcCCEEEEECCcccccccccccCCccccC
Confidence 289999887 5 78899 9998885 688 666 899999999999999999998853321 1111 33467
Q ss_pred CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHh
Q 001989 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM 863 (985)
Q Consensus 784 ~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~l 863 (985)
+|+++.|+||++ +||++|++++++++.+.+.... . .++. +. ++..+.++.+.+..+
T Consensus 199 ~di~~~S~sK~l------~g~~~G~~~~~~~~~~~l~~~~-~------------~~~~-~~----~~~~~~a~~~al~~~ 254 (374)
T 2aeu_A 199 ADLVVTSTDKLM------EGPRGGLLAGKKELVDKIYIEG-T------------KFGL-EA----QPPLLAGIYRALKNF 254 (374)
T ss_dssp CSEEEEETTSSS------SSCSCEEEEEEHHHHHHHHHHH-H------------TTTC-BC----CHHHHHHHHHHHHHC
T ss_pred CcEEEecCcccc------cCcceEEEEECHHHHHHHHHhh-c------------cccC-CC----CHHHHHHHHHHHHHH
Confidence 899999999986 4689999999887665442110 0 0011 11 112222333445544
Q ss_pred cHHHHHHHHHHHHHHHHHH----HHHhhcc---C----Ceee-cCCCCceeeEEEEEecCccccCCCC---HHHHHHH-H
Q 001989 864 GSKGLTEASKIAILNANYM----AKRLEKH---Y----PILF-RGVNGTVAHEFIVDLRGLKNTAGIE---PEDVAKR-L 927 (985)
Q Consensus 864 g~eGl~~~~~~~~~~a~~l----~~~L~~g---~----~l~~-~~~~~~~~~~~iv~~~~~~~~~g~~---~~~v~~~-L 927 (985)
..+.+ ++..++++++ ++.|.+. + ++.+ ..+.+..+ +..+... ..+ ..+++.. |
T Consensus 255 ~~~~~----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~--~~~~~~~-----~~~~~~~~~~~~~ll 323 (374)
T 2aeu_A 255 NLERI----RKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVI--KRVYKDD-----TINIKKLIEIGFNLL 323 (374)
T ss_dssp CHHHH----HHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEE--EEEESSH-----HHHHHHHHHHHHHHH
T ss_pred hHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEE--Eeecccc-----cccccchHHHHHHHH
Confidence 33222 2333444444 3444321 1 1211 12211111 1112210 000 1225544 4
Q ss_pred HHCCCccCCC-CCC-CCCEEEEeccC-CCCHHHHHHHHccCChhHHHHhhcc
Q 001989 928 MDYGFHGPTM-SWP-VPGTLMIEPTE-SESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 928 ~~~Gi~~~~~-~~p-~~~~lris~t~-~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
.++||.+... .+| ..+.+||+++. ..+++++++ +++.++++++++.+
T Consensus 324 ~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~--l~~~l~~~l~~~~~ 373 (374)
T 2aeu_A 324 KNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNY--IIKAIVESIKMAFK 373 (374)
T ss_dssp HHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHH--HHHHHHHHHHHHTC
T ss_pred HhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHH--HHHHHHHHHHHHhc
Confidence 5679987542 333 24689999974 344455888 77888888877654
No 324
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.65 E-value=1.7e-14 Score=167.10 Aligned_cols=277 Identities=15% Similarity=0.093 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
.+.++++.+|+++|.+ ++.+++|+|.++++++.++. +||+|+++...|+++...++. .|++++.++.
T Consensus 53 ~~~~l~~~la~~~~~~--~v~~~~ggt~al~~~l~~l~----~gd~Vlv~~~~~~~~~~~~~~----~G~~~~~v~~~~~ 122 (424)
T 2po3_A 53 LVREFEERVAGLAGVR--HAVATCNATAGLQLLAHAAG----LTGEVIMPSMTFAATPHALRW----IGLTPVFADIDPD 122 (424)
T ss_dssp HHHHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHHT----CCSEEEEESSSCTHHHHHHHH----TTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcC----CCCEEEECCCccHHHHHHHHH----cCCEEEEEecCCC
Confidence 3567889999999985 58899999988888776652 579999999999999987653 5888888764
Q ss_pred ------hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC---CCCcccceEEEecC-c
Q 001989 289 ------KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK---PPGELGADIVVGSA-Q 357 (985)
Q Consensus 289 ------~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~---~~~~~GaDi~v~s~-k 357 (985)
++|++ +++++++|++.+ ++|.+.|+++|.++|+++|+++++| +..+.|... +.+.+ .|++++|. |
T Consensus 123 ~~~~d~~~l~~~i~~~~~~v~~~~--~tG~~~~l~~i~~la~~~~~~li~D-ea~~~g~~~~~~~~~~~-~di~~~S~sk 198 (424)
T 2po3_A 123 TGNLDPDQVAAAVTPRTSAVVGVH--LWGRPCAADQLRKVADEHGLRLYFD-AAHALGCAVDGRPAGSL-GDAEVFSFHA 198 (424)
T ss_dssp TSSBCHHHHGGGCCTTEEEEEEEC--GGGCCCCHHHHHHHHHHTTCEEEEE-CTTCTTCEETTEETTSS-SSEEEEECCT
T ss_pred cCCcCHHHHHHhhCcCCcEEEEEC--CCCCcCCHHHHHHHHHHcCCEEEEE-CccccCCeECCeecccc-cCEEEEeCCC
Confidence 34555 777899999876 6899999999999999999999995 344443321 11222 58998886 3
Q ss_pred cccccCCCCCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCc-ceeeecccccccccccccCCCccchhHHHHHHHHHHH
Q 001989 358 RFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKP-ALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYA 435 (985)
Q Consensus 358 ~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~-~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l 435 (985)
..+ +||+.+|++.++ +++.+.+..... .+.. .+.. . ..|+.... ..+ .+++.
T Consensus 199 ~K~----l~~~~~G~~v~~~~~l~~~l~~~~~------~~~~~~~~~-----~-----~~g~~~~~--~~~---~aa~~- 252 (424)
T 2po3_A 199 TKA----VNAFEGGAVVTDDADLAARIRALHN------FGFDLPGGS-----P-----AGGTNAKM--SEA---AAAMG- 252 (424)
T ss_dssp TSS----SCCSSCEEEEESCHHHHHHHHHHHB------TTTTCTTCC-----T-----TCCCBCCC--CHH---HHHHH-
T ss_pred CCC----ccCCCCeEEEeCCHHHHHHHHHHHh------cCccccccc-----c-----ccCcCCCc--CHH---HHHHH-
Confidence 322 233456888888 677655421110 0000 0100 0 00111000 112 12221
Q ss_pred HHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC---C--cceEEEecC------CHHHHHHHHHHcCceeeeecC
Q 001989 436 VYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP---F--FDTVKVKCA------DAHAIASAAYKIEMNLRVVDS 504 (985)
Q Consensus 436 ~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~---~--~~~~~~~~~------~~~~v~~~L~~~GI~~~~~~~ 504 (985)
+...++++++.++..++++++.+.|+++.++++...+ . +..+.+..+ +..++.+.|.++||.++....
T Consensus 253 -l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~ 331 (424)
T 2po3_A 253 -LTSLDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFS 331 (424)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHHSSCHHHHHHHHHHTTEECBCTTC
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCccchhhHHHHHHHHHHCCCceecccC
Confidence 1123567888899999999999999988338886421 1 234445544 278899999999998754211
Q ss_pred -------------------------CeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 505 -------------------------NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 505 -------------------------~~lris~t~~~t~edId~li~aL~~ 529 (985)
..++++++.++|++|+++++++|..
T Consensus 332 ~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~ 381 (424)
T 2po3_A 332 PGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRL 381 (424)
T ss_dssp SCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHH
T ss_pred CccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1278888899999999999999974
No 325
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.65 E-value=2.5e-15 Score=178.22 Aligned_cols=315 Identities=12% Similarity=0.077 Sum_probs=187.4
Q ss_pred hhhHHHHHHHHHHHHHHHhCCC--ccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 627 AQGYQEMFNNLGEWLCTITGFD--SFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~--~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
.+|..++.+++.+++.+..|.+ ... ++.++|++++..++.++. ..++++|+++.+.|..+...++..|++
T Consensus 133 ~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~-------~~~gd~Vlv~~p~y~~~~~~~~~~g~~ 205 (500)
T 3tcm_A 133 SQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLI-------RNEKDGILVPIPQYPLYSASIALHGGA 205 (500)
T ss_dssp TTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHC-------CSTTEEEEEEESCCTHHHHHHHHTTCE
T ss_pred CcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHc-------CCCCCEEEEeCCCcHhHHHHHHHcCCE
Confidence 3566666777777777776743 333 445556665543333221 136789999999888888888899999
Q ss_pred EEEEcCCCC--CCCCHHHHHHHHHhc---CCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccccC
Q 001989 704 IVSVGTDAK--GNINIEELRKAAEAN---RDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVG 775 (985)
Q Consensus 704 vv~v~~d~~--g~iD~e~L~~~i~~~---~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~~ 775 (985)
++.++++++ +.+|+++|+++|++. ..++++|++++| |++|.+. .++++|+++|+++|+++++|+++....-.
T Consensus 206 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~ 285 (500)
T 3tcm_A 206 LVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYV 285 (500)
T ss_dssp EEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCC
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccC
Confidence 999998765 489999999999831 127899999999 5699885 25788888899999999999997421110
Q ss_pred CCCC--C------cc-----CCc-EEEeCCcccc-cccCCCCCCceEEEEE---cccccCcCCCCccccCCCCCCCCCCC
Q 001989 776 LTSP--G------YI-----GAD-VCHLNLHKTF-CIPHGGGGPGMGPIGV---KKHLAPFLPSHPVVSTGGIPAPEKSQ 837 (985)
Q Consensus 776 l~~p--g------~~-----g~D-i~~~s~hK~l-~~p~g~GGPg~G~i~~---~~~l~~~lp~~~~g~~~~~~~~~~~~ 837 (985)
-..+ . .+ ..+ +++.|++|+| +.| |.++|++++ ++++.+.+....
T Consensus 286 ~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~----G~R~G~~~~~~~~~~~~~~l~~~~-------------- 347 (500)
T 3tcm_A 286 DNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGEC----GKRGGYFEITGFSAPVREQIYKIA-------------- 347 (500)
T ss_dssp TTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCG----GGCCEEEEEESCCTTHHHHHHHHH--------------
T ss_pred CCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCC----ccceEEEEEeCCCHHHHHHHHHHH--------------
Confidence 0001 0 11 122 5567899988 443 567899987 665554332100
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHH---------hcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEE
Q 001989 838 PLGTIAAAPWGSALILPISYTYIAM---------MGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVD 908 (985)
Q Consensus 838 ~~~~i~s~~~g~~~~~~~a~a~l~~---------lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~ 908 (985)
. ...+++..++.+ +..++.. .-.+.+.++.++..++++++.+.|++..++.+..+.+..+.-+-+.
T Consensus 348 ~-~~~~~~~~~q~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~ 422 (500)
T 3tcm_A 348 S-VNLCSNITGQIL----ASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQIC 422 (500)
T ss_dssp H-TTCCCCHHHHHH----HHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBTTEECCEEC
T ss_pred h-cccCCCHHHHHH----HHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCeEEEEeeeec
Confidence 0 011122122221 1111210 0012234555667888899999998632343323333332111122
Q ss_pred ecCc----cccCCCCHH-H-HHHHHHHCCCccCCC-CC---CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 909 LRGL----KNTAGIEPE-D-VAKRLMDYGFHGPTM-SW---PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 909 ~~~~----~~~~g~~~~-~-v~~~L~~~Gi~~~~~-~~---p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
++.- ....+.... . +.+.|.++||.+... .| +..+.+|+++. .++++|++ +++.|+++++++.
T Consensus 423 lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~--~i~~l~~~~~~~~ 495 (500)
T 3tcm_A 423 LPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--PQEDKIPA--VISRFTVFHEAFM 495 (500)
T ss_dssp CCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--SCTTTHHH--HHHHHHHHHHHHH
T ss_pred CchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--CCHHHHHH--HHHHHHHHHHHHH
Confidence 2100 000012222 2 235566779987532 22 22468999998 88999999 7788888877654
No 326
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.65 E-value=1.7e-15 Score=173.81 Aligned_cols=274 Identities=12% Similarity=0.079 Sum_probs=179.2
Q ss_pred HHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHH-hhcCCCeEEEEeC------
Q 001989 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICIT-RADGFDIKVVVSD------ 287 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~-~a~~~gi~v~~v~------ 287 (985)
++++.+++++|.+..++ +..+||.+++.++.++ . ++||+|+++...|+++...+.. ...+.+++++.++
T Consensus 73 ~~r~~la~~~g~~~~~i-~~~sGt~a~~~a~~~~-~--~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 148 (405)
T 2vi8_A 73 LARERAKQLFGAEHANV-QPHSGAQANMAVYFTV-L--EHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETH 148 (405)
T ss_dssp HHHHHHHHHHTCSEEEC-CCSSHHHHHHHHHHHH-C--CTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTC
T ss_pred HHHHHHHHHhCCCceEE-EecCcHHHHHHHHHHh-c--CCCCEEEEecccccchhcccchhhhccceeEEEecccccccC
Confidence 46789999999986444 3455587777666554 2 3889999999999877542100 0001123555543
Q ss_pred ---chhhhc-cCC-CEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-CCCCcc---cceEEEecC-c
Q 001989 288 ---LKDIDY-KSG-DVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGEL---GADIVVGSA-Q 357 (985)
Q Consensus 288 ---~~~l~~-l~~-~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-~~~~~~---GaDi~v~s~-k 357 (985)
++++++ +++ ++++|++ +|+.+|...|+++|.++|+++|+++++| +.++.|.. .....+ ++|++++|. |
T Consensus 149 ~~d~~~l~~~i~~~~~~~v~~-~~~~~~~~~~l~~i~~l~~~~~~~li~D-ea~~~g~~~~~~~~~~~~~~di~~~s~sK 226 (405)
T 2vi8_A 149 VIDYDDVREKARLHRPKLIVA-AAAAYPRIIDFAKFREIADEVGAYLMVD-MAHIAGLVAAGLHPNPVPYAHFVTTTTHK 226 (405)
T ss_dssp SBCHHHHHHHHHHHCCSEEEE-CCSSCCSCCCHHHHHHHHHHHTCEEEEE-CTTTHHHHHTTSSCCSTTTCSEEEEESSS
T ss_pred CcCHHHHHHHHHhcCCeEEEE-eCCCCCccCCHHHHHHHHHHcCCEEEEE-ccccccccccCcCCCccccCCEEEEeccc
Confidence 345655 654 7888877 5555687779999999999999999995 34444321 111112 689999997 7
Q ss_pred cccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHH
Q 001989 358 RFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVY 437 (985)
Q Consensus 358 ~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~ 437 (985)
+|++ ++| |++++++++.+.+.... .+ ...+++|. ....++.+++ ..
T Consensus 227 ~~~g-----~~g-G~~~~~~~~~~~l~~~~---------------------~~--~~~~~~~~---~~~aa~~~al--~~ 272 (405)
T 2vi8_A 227 TLRG-----PRG-GMILCQEQFAKQIDKAI---------------------FP--GIQGGPLM---HVIAAKAVAF--GE 272 (405)
T ss_dssp TTCC-----CSC-EEEEECHHHHHHHHHHH---------------------TT--TTCSSCCH---HHHHHHHHHH--HH
T ss_pred cCCC-----CCC-eEEEEcHHHHHHHHhhh---------------------cc--cccCCCCH---HHHHHHHHHH--HH
Confidence 7753 234 89999988766541000 00 00122222 2232333333 33
Q ss_pred hCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-CCcceEEEecC----CHHHHHHHHHHcCceeeee----------
Q 001989 438 HGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCA----DAHAIASAAYKIEMNLRVV---------- 502 (985)
Q Consensus 438 ~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~----~~~~v~~~L~~~GI~~~~~---------- 502 (985)
+..++++++.++..++.+++.+.|+++| +++..+ .....+.+.++ ...++.+.|.++||.+...
T Consensus 273 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~ 351 (405)
T 2vi8_A 273 ALQDDFKAYAKRVVDNAKRLASALQNEG-FTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPF 351 (405)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTT
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhCC-CeEecCCCCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCC
Confidence 3346889999999999999999999996 888742 22333445543 2778999999999987642
Q ss_pred cCCeEEEEecc----CCCHHHHHHHHHHHhC
Q 001989 503 DSNTVTASFDE----TTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ~~~~lris~t~----~~t~edId~li~aL~~ 529 (985)
.++.+|++++. ..|++|+++++++|..
T Consensus 352 ~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~ 382 (405)
T 2vi8_A 352 VTSGIRIGTAAVTTRGFGLEEMDEIAAIIGL 382 (405)
T ss_dssp TCSEEEEECHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCceEEeeeeeeecCCCHHHHHHHHHHHHH
Confidence 14679999997 5689999999999874
No 327
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.65 E-value=5.2e-14 Score=160.88 Aligned_cols=321 Identities=15% Similarity=0.133 Sum_probs=200.2
Q ss_pred HHHHHHHHHhcCCCccceecCCCCCCCCCcHHHHHHHHhC--CccccccCCChhhHhhhHHHHHHHHHHHHHHhc----C
Q 001989 152 QMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMEN--PAWYTQYTPYQAEIAQGRLESLLNFQTMIADLT----G 225 (985)
Q Consensus 152 e~~~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~--~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~----g 225 (985)
++.+...++...+....+ ++.|..+...|+.+.+++... .. ...|.+. +|.. ++++.+|+++ |
T Consensus 18 ~~~~~~~~~~~~~~~~i~-l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~-----~g~~----~lr~~ia~~~~~~~g 86 (385)
T 1b5p_A 18 AVNAKALELRRQGVDLVA-LTAGEPDFDTPEHVKEAARRALAQG-KTKYAPP-----AGIP----ELREALAEKFRRENG 86 (385)
T ss_dssp HHHHHHHHHHHTTCCCEE-CCCSSCSSCCCHHHHHHHHHHHHTT-CCSCCCT-----TCCH----HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCCCEEE-ecCCCCCCCCCHHHHHHHHHHHhcC-CCCCCCC-----CCCH----HHHHHHHHHHHHHhC
Confidence 455555555443333222 345544444566554343321 11 2234332 2222 3444555544 5
Q ss_pred C--CCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----------hhhhc
Q 001989 226 L--PMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----------KDIDY 293 (985)
Q Consensus 226 ~--~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----------~~l~~ 293 (985)
. ++.++.+++|+|.+++.++.++ . ++||+|+++...|+.+...++. .|.+++.++. ++|++
T Consensus 87 ~~~~~~~i~~t~g~~~al~~~~~~l-~--~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~~~l~~ 159 (385)
T 1b5p_A 87 LSVTPEETIVTVGGSQALFNLFQAI-L--DPGDEVIVLSPYWVSYPEMVRF----AGGVVVEVETLPEEGFVPDPERVRR 159 (385)
T ss_dssp CCCCGGGEEEESHHHHHHHHHHHHH-C--CTTCEEEEEESCCTHHHHHHHH----TTCEEEEEECCGGGTTCCCHHHHHT
T ss_pred CCCChHHEEEcCChHHHHHHHHHHh-c--CCCCEEEEcCCCchhHHHHHHH----cCCEEEEeecCcccCCCCCHHHHHH
Confidence 4 4568999999998887776655 2 3899999999999998887753 5778777754 24555
Q ss_pred -cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCC----CCCCcc--cceEEEecC-ccccc
Q 001989 294 -KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTIL----KPPGEL--GADIVVGSA-QRFGV 361 (985)
Q Consensus 294 -l~~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l----~~~~~~--GaDi~v~s~-k~lg~ 361 (985)
+++++++|++.+| |.+|.+. ++++|+++|+++|+++++|. ..+.... .+...+ +.+|+++|. |.++.
T Consensus 160 ~l~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~ 238 (385)
T 1b5p_A 160 AITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDE-IYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAM 238 (385)
T ss_dssp TCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC-TTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTC
T ss_pred hcCCCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEc-cchhcccCCCCCCHHHcCCCCEEEEEechhhcCC
Confidence 6778999999998 7899984 59999999999999999953 3332111 111223 668889887 76643
Q ss_pred cCCCCCCc--EEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHH--
Q 001989 362 PMGYGGPH--AAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVY-- 437 (985)
Q Consensus 362 P~~~GGP~--~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~-- 437 (985)
|| +|++++++++++.+.. . +...+.+..+ ....+..++ +..
T Consensus 239 ------~G~RiG~~~~~~~~~~~l~~-------------------------~-~~~~~~~~~~-~~~~a~~~~--l~~~~ 283 (385)
T 1b5p_A 239 ------TGWRIGYACGPKEVIKAMAS-------------------------V-SRQSTTSPDT-IAQWATLEA--LTNQE 283 (385)
T ss_dssp ------GGGCCEEEECCHHHHHHHHH-------------------------H-HHTTTCSCCH-HHHHHHHHH--HHCHH
T ss_pred ------cccceEEEEeCHHHHHHHHH-------------------------H-HhhccCCCCH-HHHHHHHHH--HhCCC
Confidence 34 7999998877665410 0 0112222211 111122122 121
Q ss_pred hCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC----CHHHHHHHHHHcCceeeeec----CCeEEE
Q 001989 438 HGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA----DAHAIASAAYKIEMNLRVVD----SNTVTA 509 (985)
Q Consensus 438 ~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~----~~~~v~~~L~~~GI~~~~~~----~~~lri 509 (985)
.+.+.++++.++..++.+++.+.|+++| +++..+....-+.+..+ +..++.+.|.++||.+.... ++.+|+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRi 362 (385)
T 1b5p_A 284 ASRAFVEMAREAYRRRRDLLLEGLTALG-LKAVRPSGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRL 362 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCBCCCSBTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEE
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHCC-CeecCCCeeEEEEEecCCCCCCHHHHHHHHHHCCeEEecccccCCCCeEEE
Confidence 0234577788888899999999999886 77653211111223343 27889999999999875421 478999
Q ss_pred EeccCCCHHHHHHHHHHHhC
Q 001989 510 SFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 510 s~t~~~t~edId~li~aL~~ 529 (985)
|++ +++++|++.++.|.+
T Consensus 363 s~~--~~~~~i~~~l~~l~~ 380 (385)
T 1b5p_A 363 SYA--TSEENLRKALERFAR 380 (385)
T ss_dssp ECC--SCHHHHHHHHHHGGG
T ss_pred Eec--CCHHHHHHHHHHHHH
Confidence 987 799999999988864
No 328
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.65 E-value=2e-15 Score=169.98 Aligned_cols=278 Identities=14% Similarity=0.179 Sum_probs=177.2
Q ss_pred HHHHHHHHHhCCCccceec-CcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC-CCCC
Q 001989 636 NLGEWLCTITGFDSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT-DAKG 713 (985)
Q Consensus 636 e~~~~la~l~G~~~~~~~~-~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~-d~~g 713 (985)
++++++++++|.+...+.. ++|++++.. +++.+ . +++|+++.+.|..+...++..|++++.+|+ ++++
T Consensus 54 ~lr~~la~~~~~~~~~i~~t~g~~~al~~---~~~~l------~-gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~ 123 (350)
T 3fkd_A 54 TLRQMLAKRNSVDNNAILVTNGPTAAFYQ---IAQAF------R-GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDIG 123 (350)
T ss_dssp HHHHHHHHHTTCCGGGEEEESHHHHHHHH---HHHHT------T-TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCGG
T ss_pred HHHHHHHHHhCcCHHHEEEcCCHHHHHHH---HHHHH------C-CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCccc
Confidence 6889999999987655444 555555533 33332 2 689999888777666677889999999998 6544
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcC-CEEEEEcccccccc-CCC---CCCccCCcEE
Q 001989 714 NINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNG-GQVYMDGANMNAQV-GLT---SPGYIGADVC 787 (985)
Q Consensus 714 ~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~g-alliVD~a~~~~~~-~l~---~pg~~g~Di~ 787 (985)
.+++ +++++|++++|+ ++|.+. |+++|.++++.++ .++++|+++..... +.. .....+.+++
T Consensus 124 ~~~~-----------~~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~ 191 (350)
T 3fkd_A 124 EADF-----------SNMDFCWLCNPNNPDGRLL-QRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVM 191 (350)
T ss_dssp GSCC-----------TTCSEEEEESSCTTTCCCC-CHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEE
T ss_pred cCcc-----------CCCCEEEEeCCCCCcCCCC-CHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEE
Confidence 4443 467889999994 699998 8999999999876 79999999842110 100 0113345688
Q ss_pred EeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHH
Q 001989 788 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eG 867 (985)
+.|++|+|++| |.++|++++++++.+.+.... .+.+. +.....++.++|.... .
T Consensus 192 ~~S~sK~~~~~----G~r~G~~~~~~~~~~~~~~~~--------------~~~~~------~~~~~~~~~~~l~~~~--~ 245 (350)
T 3fkd_A 192 VYSFSHAYGIP----GLRIGYIVANKDFMKRVAAFS--------------TPWAV------NALAIEAAKFILIHPA--Q 245 (350)
T ss_dssp EEESHHHHSCG----GGCCEEEECCHHHHHHHHTTC--------------CTTCS------CHHHHHHHHHHHHCTT--T
T ss_pred EecCchhccCc----chheEeEEeCHHHHHHHHHhC--------------CCCCC------CHHHHHHHHHHHhCHH--H
Confidence 99999999643 567899998877665543210 01111 1122222334444222 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHH-CCCccCCC-CCC--CCC
Q 001989 868 LTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD-YGFHGPTM-SWP--VPG 943 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~-~Gi~~~~~-~~p--~~~ 943 (985)
+.+..++..++++++.+.|++...+...++.+. + +.+.++. + +..++.++|.+ +||.+... .++ ..+
T Consensus 246 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~--~~~~~~~-----~-~~~~l~~~L~~~~gi~v~~g~~f~~~~~~ 316 (350)
T 3fkd_A 246 FTLPIRKWQRNTVDFITALNRLDGVEVHPSGTT-F--FLLRLKK-----G-TAAELKKYMLEEYNMLIRDASNFRGLDES 316 (350)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHSTTEEECCCSSS-E--EEEEESS-----S-CHHHHHHHHHHTTCEECEECTTSTTCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcEECCCCCc-E--EEEECCC-----C-CHHHHHHHHHHHCCEEEEeCccCCCCCCC
Confidence 222233344788889998876323433222222 2 2355541 2 68899999999 89987532 222 258
Q ss_pred EEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 944 TLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 944 ~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
++||++. +.+|+|+ +++.|+++.++-.
T Consensus 317 ~iRis~~---~~~~~~~--l~~al~~~~~~~~ 343 (350)
T 3fkd_A 317 YVRITTQ---RPAQNQL--FIKALETFLEKYE 343 (350)
T ss_dssp EEEEECC---CHHHHHH--HHHHHHHHHTC--
T ss_pred EEEEEcC---CHHHHHH--HHHHHHHHHHHhc
Confidence 9999984 8999999 6677777665433
No 329
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.65 E-value=1.6e-14 Score=167.72 Aligned_cols=303 Identities=15% Similarity=0.091 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCcccHHHHHHCC---------
Q 001989 633 MFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPATAAMCG--------- 701 (985)
Q Consensus 633 ~~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~-~~Hg~~~~~a~~~G--------- 701 (985)
...++++.+++++|.+. ..++.++|++|++.++.+++.+ .++++||+.+ .+||.........+
T Consensus 86 ~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 159 (433)
T 1zod_A 86 PVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLV------TGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGP 159 (433)
T ss_dssp HHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHH------HTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCC
T ss_pred HHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHh------hCCCeEEEECCCcCCCChhHHhhcCCccccccCC
Confidence 35578888999998654 3456688998887777665543 1346777754 67887665443211
Q ss_pred --cEEEEEcCCCC------------CCCCHHHHHHHHHhcC-CCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCC
Q 001989 702 --MKIVSVGTDAK------------GNINIEELRKAAEANR-DNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGG 761 (985)
Q Consensus 702 --~~vv~v~~d~~------------g~iD~e~L~~~i~~~~-~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~ga 761 (985)
..++.++++.. +.+|+++|+++++++. +++++|+++.. |++|.+. + +++|.++|+++|+
T Consensus 160 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~-~~~~~l~~l~~l~~~~~~ 238 (433)
T 1zod_A 160 AAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIE-LPDGYMAALKRKCEARGM 238 (433)
T ss_dssp CCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEE-CCTTHHHHHHHHHHHHTC
T ss_pred CCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCccc-CCHHHHHHHHHHHHHhCC
Confidence 13344544211 1246999999997432 46676665432 4579654 4 9999999999999
Q ss_pred EEEEEccccccccCCCCCC-----ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCC
Q 001989 762 QVYMDGANMNAQVGLTSPG-----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKS 836 (985)
Q Consensus 762 lliVD~a~~~~~~~l~~pg-----~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~ 836 (985)
++|+|++|. +++-..... ...+|++++ .|+|+ +|.++|++++++++.+.+...... +
T Consensus 239 ~li~DEv~~-~~g~~g~~~~~~~~~~~~di~s~--sK~~~-----~G~~ig~~~~~~~~~~~~~~~~~~-------~--- 300 (433)
T 1zod_A 239 LLILDEAQT-GVGRTGTMFACQRDGVTPDILTL--SKTLG-----AGLPLAAIVTSAAIEERAHELGYL-------F--- 300 (433)
T ss_dssp EEEEECTTT-TTTTTSSSSTHHHHTCCCSEEEE--CHHHH-----TTSSCEEEEECHHHHHHHHHTTCC-------C---
T ss_pred EEEEecccc-CCCcCchHhHHhhcCCCCCEEEe--ccccc-----CCCCeeEEEEhHHHHHhhccCCCC-------C---
Confidence 999999985 222111111 124687755 49885 256789999998765443211000 0
Q ss_pred CCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCee-ecCCCCceeeEEEEEecCc
Q 001989 837 QPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL-FRGVNGTVAHEFIVDLRGL 912 (985)
Q Consensus 837 ~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~-~~~~~~~~~~~~iv~~~~~ 912 (985)
.+. +.+++..++++.+.+..+..+++ .++..+++++++++|++. +... ...+.+.+. .+.+...
T Consensus 301 --~~t----~~~~~~~~~a~~aal~~~~~~~~---~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~---~i~~~~~ 368 (433)
T 1zod_A 301 --YTT----HVSDPLPAAVGLRVLDVVQRDGL---VARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLL---GVEIVKD 368 (433)
T ss_dssp --CCT----TTTCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEE---EEEEEEE
T ss_pred --CCC----CCcCHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEE---EEEEecC
Confidence 001 11233444445556665544443 345667788888888651 3321 111112222 2333210
Q ss_pred c---ccCCCCHHHHHHHHHHCCCccCCCC-CCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 913 K---NTAGIEPEDVAKRLMDYGFHGPTMS-WPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 913 ~---~~~g~~~~~v~~~L~~~Gi~~~~~~-~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
. ........++.+.|.++|+.+.... +..++.+||+++..+|++||++ +++.|+++++++
T Consensus 369 ~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~--~l~~l~~~l~~~ 432 (433)
T 1zod_A 369 RRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDL--GLSLLGQAIERA 432 (433)
T ss_dssp TTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHH--HHHHHHHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHCCCeEeccCCCCCCCEEEEECCcCCCHHHHHH--HHHHHHHHHHHh
Confidence 0 0001236789999999999875432 2223799999999999999999 788888887653
No 330
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.65 E-value=1.3e-14 Score=165.89 Aligned_cols=281 Identities=12% Similarity=0.018 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
.+.++++.+|+++|.+ +..++.+||.+++.++.+++. ++||+|+++...|+++...++ ..|++++.++.
T Consensus 39 ~~~~l~~~la~~~~~~--~~i~~~sGt~al~~~l~~l~~--~~gd~Vi~~~~~~~~~~~~~~----~~g~~~~~v~~~~~ 110 (388)
T 1b9h_A 39 EVNSFEREFAAHHGAA--HALAVTNGTHALELALQVMGV--GPGTEVIVPAFTFISSSQAAQ----RLGAVTVPVDVDAA 110 (388)
T ss_dssp HHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTTC--CTTCEEEEESSSCTHHHHHHH----HTTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcCC--CCcCEEEECCCccHHHHHHHH----HcCCEEEEEecCCC
Confidence 3456889999999987 344566668777766665533 378999999999999998875 35888887764
Q ss_pred ------hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC---CCCcccceEEEec--C
Q 001989 289 ------KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK---PPGELGADIVVGS--A 356 (985)
Q Consensus 289 ------~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~---~~~~~GaDi~v~s--~ 356 (985)
++|++ ++++|++|+.. |.+|.+.|+++|.++|+++|+++++| +..+.|... +.+.+| |+.+.| .
T Consensus 111 ~~~~d~~~l~~~i~~~~~~v~~~--n~tG~~~~l~~i~~la~~~~~~li~D-~a~~~g~~~~~~~~~~~~-~i~~~S~s~ 186 (388)
T 1b9h_A 111 TYNLDPEAVAAAVTPRTKVIMPV--HMAGLMADMDALAKISADTGVPLLQD-AAHAHGARWQGKRVGELD-SIATFSFQN 186 (388)
T ss_dssp TCCBCHHHHHHHCCTTEEEECCB--CGGGCCCCHHHHHHHHHHHTCCBCEE-CTTCTTCEETTEEGGGSS-SCEEEECCT
T ss_pred cCCCCHHHHHHhcCcCceEEEEe--CCccCcCCHHHHHHHHHHcCCEEEEe-cchhcCCccCCeeccccc-ceEEEEccC
Confidence 34555 77889888822 56899999999999999999999995 345554322 234566 555555 3
Q ss_pred -ccccccCCCCCCcEEEEEEchh-h--HhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 357 -QRFGVPMGYGGPHAAFLATSQE-Y--KRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 357 -k~lg~P~~~GGP~~G~l~~~~~-~--~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
|.++ |+.+|++.++++ + .+.+.. +.+...+. ....| .....|++...+ .+ .++
T Consensus 187 ~K~l~------g~~~G~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~----------~~~~~g~~~~~~--~~---~~a 243 (388)
T 1b9h_A 187 GKLMT------AGEGGAVVFPDGETEKYETAFL-RHSCGRPR-DDRRY----------FHKIAGSNMRLN--EF---SAS 243 (388)
T ss_dssp TSSSC------SSSCEEEEECTTCHHHHHHHHH-HTBTTCCT-TCSSC----------CCCSCCCBCBCB--HH---HHH
T ss_pred CCccc------CCCeEEEEECCHHHHHHHHHHH-HHhCCCCc-cCccc----------eeecccccCCcC--HH---HHH
Confidence 4443 234588888765 4 343310 00000000 00000 001123322111 11 111
Q ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-----CC-cceEEEecCC-----HHHHHHHHHHcCceeee
Q 001989 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-----PF-FDTVKVKCAD-----AHAIASAAYKIEMNLRV 501 (985)
Q Consensus 433 ~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-----~~-~~~~~~~~~~-----~~~v~~~L~~~GI~~~~ 501 (985)
+.... .+-+++..++..++++++.+.|+++.++++... +. ...+.+.+++ ..++.+.|.++||.++.
T Consensus 244 ~~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~ 321 (388)
T 1b9h_A 244 VLRAQ--LARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFA 321 (388)
T ss_dssp HHHHH--HTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcCcccHHHHHHHHHHCCCCccc
Confidence 11121 234667778888899999999999833887642 11 2345566652 56799999999997743
Q ss_pred ec---------------------------------CCeEEEEeccCC-CHHHHHHHHHHHhC
Q 001989 502 VD---------------------------------SNTVTASFDETT-TLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ~~---------------------------------~~~lris~t~~~-t~edId~li~aL~~ 529 (985)
.. .+.+|++++..+ |++|||+++++|.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~ 383 (388)
T 1b9h_A 322 AFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIAD 383 (388)
T ss_dssp CCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHH
T ss_pred ccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHH
Confidence 21 125999999999 99999999999873
No 331
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.65 E-value=2.8e-14 Score=162.09 Aligned_cols=302 Identities=11% Similarity=0.033 Sum_probs=193.4
Q ss_pred CCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCC--CCcceeeccchHHHHHHHHHHhhh
Q 001989 173 MGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGL--PMSNASLLDEGTAAAEAMAMCNNI 250 (985)
Q Consensus 173 ~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~--~~~~~sl~~~~ta~~ea~~~a~~~ 250 (985)
.|.-+...|+.+.+++.+.......|.+. +|..+...++.+.+.+.+|. ++.++.+++|+|.+++.++.++.
T Consensus 30 ~~~~~~~~~~~v~~a~~~~~~~~~~y~~~-----~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~- 103 (376)
T 3ezs_A 30 IGEPQFETPKFIQDALKNHTHSLNIYPKS-----AFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVL- 103 (376)
T ss_dssp SCCCCSCCCHHHHHHHHTTGGGGGSCCCT-----TCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHT-
T ss_pred CCCCCCCCCHHHHHHHHHhhhhcCCCCCC-----CCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHc-
Confidence 33334446777765655443334445442 22222222333444444587 67789999999988887766542
Q ss_pred hcCC--CCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch-------hhhc-cCCCEeEEEEEcC-CCCeeecc---HH
Q 001989 251 QKGK--KKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK-------DIDY-KSGDVCGVLVQYP-GTEGEVLD---YG 316 (985)
Q Consensus 251 ~~~~--g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~-------~l~~-l~~~t~~V~v~~p-n~~G~v~d---i~ 316 (985)
++ ||+|+++...|+++...++ ..|.+++.++.+ ++++ +.+++++|++.+| |.+|.+.+ ++
T Consensus 104 --~~~~gd~vl~~~p~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~ 177 (376)
T 3ezs_A 104 --FDYQNPTIAYPNPFYQIYEGAAK----FIKAKSLLMPLTKENDFTPSLNEKELQEVDLVILNSPNNPTGRTLSLEELI 177 (376)
T ss_dssp --TTCSSCEEEEEESCCTHHHHHHH----HTTCEEEEEECCGGGTSCCCCCHHHHHHCSEEEECSSCTTTCCCCCHHHHH
T ss_pred --CCCCCCEEEEecCCcHhHHHHHH----HcCCEEEEcccCCCCCcchhHHhhhccCCCEEEEcCCCCCcCCCCCHHHHH
Confidence 36 8999999999999888765 358888887653 3444 5567899999888 67999865 77
Q ss_pred HHHHHHHhCCcEEEEEecCccccCCC--CCC-----------cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhc
Q 001989 317 DFIKNAHANGVKVVMATDLLALTILK--PPG-----------ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRM 382 (985)
Q Consensus 317 ~I~~~a~~~galliV~a~~~~lg~l~--~~~-----------~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~ 382 (985)
+|+++|+++|+++++|. ..+..... ... .++.++++.|. |.||.| |..+|++.+++++++.
T Consensus 178 ~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~ 252 (376)
T 3ezs_A 178 SWVKLALKHDFILINDE-CYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAP----GLRSGFIAGDSRLLEK 252 (376)
T ss_dssp HHHHHHHHHTCEEEEEC-TTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCG----GGCCEEEEECHHHHHH
T ss_pred HHHHHHHHcCcEEEEEc-cchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCc----cceeEEEeeCHHHHHH
Confidence 88888999999999953 33321111 110 46788999997 877532 3456899888887765
Q ss_pred CCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHh
Q 001989 383 MPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLK 462 (985)
Q Consensus 383 lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~ 462 (985)
+... +...+.+. +.....+..++ +. ..+.++++.++..++.+++.+.|+
T Consensus 253 ~~~~--------------------------~~~~~~~~-~~~~~~a~~~~--l~--~~~~~~~~~~~~~~~~~~l~~~l~ 301 (376)
T 3ezs_A 253 YKAF--------------------------RAYLGYTS-ANAIQKASEAA--WL--DDRHAEFFRNIYANNLKLARKIFK 301 (376)
T ss_dssp HHHH--------------------------HTTTCCCC-CHHHHHHHHHH--HH--CSHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHH--------------------------HhhhcCCC-ChHHHHHHHHH--Hh--CcHHHHHHHHHHHHHHHHHHHHhc
Confidence 5100 00001111 11112222222 12 245578888999999999999987
Q ss_pred cCCCeEEcCCCCcceEEEecCCHHHHHHHHHH-cCceeeee--------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 463 KLGTVEVQGLPFFDTVKVKCADAHAIASAAYK-IEMNLRVV--------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 463 ~~g~~~~~~~~~~~~~~~~~~~~~~v~~~L~~-~GI~~~~~--------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
| +....... -+.+..++..++.++|.+ +||.+... .++.+|++++. |++||++++++|.+
T Consensus 302 --~-~~~~~~~~--~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~ 370 (376)
T 3ezs_A 302 --N-TLIYPYSF--YVYLPVQNGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY--DTPLLEKPLEIIET 370 (376)
T ss_dssp --T-CCCCSBSS--EEEEECSCHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred --C-CCCCCcce--EEEEECCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC--CHHHHHHHHHHHHH
Confidence 5 54211111 233455467889999987 89987531 24789999873 99999999999874
No 332
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.64 E-value=2.1e-14 Score=161.40 Aligned_cols=273 Identities=17% Similarity=0.095 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHH--HHHhhcCC-CeEEEEeC
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDI--CITRADGF-DIKVVVSD 287 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~--~~~~a~~~-gi~v~~v~ 287 (985)
+...++++++++++| +..++.+++|||.+++.++.+. .++||+|+++...|++.... +... . |.+++.++
T Consensus 43 ~~~~~l~~~la~~~g-~~~~v~~~~~gt~a~~~al~~~---~~~gd~vi~~~~~~~~~~~~~~~~~~---~~g~~~~~v~ 115 (356)
T 1v72_A 43 ELTAQVKRKFCEIFE-RDVEVFLVPTGTAANALCLSAM---TPPWGNIYCHPASHINNDECGAPEFF---SNGAKLMTVD 115 (356)
T ss_dssp HHHHHHHHHHHHHHT-SCCEEEEESCHHHHHHHHHHTS---CCTTEEEEECTTSHHHHSSTTHHHHH---TTSCEEEECC
T ss_pred hHHHHHHHHHHHHhC-CCCcEEEeCCccHHHHHHHHHh---cCCCCEEEEcCccchhhhhchHHHHH---hCCcEEEEec
Confidence 345678889999999 4445778899997776665543 23789999999999887655 4432 2 77888876
Q ss_pred c-------hhhhc--cCC-------CEeEEEEEcCCCCee---eccHHHHHHHHHhCCcEEEEEecCcccc---C-CCCC
Q 001989 288 L-------KDIDY--KSG-------DVCGVLVQYPGTEGE---VLDYGDFIKNAHANGVKVVMATDLLALT---I-LKPP 344 (985)
Q Consensus 288 ~-------~~l~~--l~~-------~t~~V~v~~pn~~G~---v~di~~I~~~a~~~galliV~a~~~~lg---~-l~~~ 344 (985)
. ++|++ +.+ ++++|++++|+.+|. .+++++|.++|+++|+++++|. ....+ . -..+
T Consensus 116 ~~~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~tG~~~~~~~l~~i~~~~~~~~~~li~D~-a~~~~~~~~~~~~~ 194 (356)
T 1v72_A 116 GPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDG-SRFANALVSLGCSP 194 (356)
T ss_dssp CGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEE-TTHHHHHHHHTCCT
T ss_pred CCCCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCeEEEEc-hhhHhHhccCCCCH
Confidence 4 34543 343 689999998877999 6789999999999999999953 22210 0 0122
Q ss_pred Cc----ccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 345 GE----LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 345 ~~----~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
.. .++|+++.+. |+ +.| .|.|++++++++.+++.. .+...++
T Consensus 195 ~~~~~~~~~d~~~~s~sK~-g~~-----~G~g~~~~~~~~~~~~~~-------------------------~~~~~~~-- 241 (356)
T 1v72_A 195 AEMTWKAGVDALSFGATKN-GVL-----AAEAIVLFNTSLATEMSY-------------------------RRKRAGH-- 241 (356)
T ss_dssp TTTTGGGTCCEEEECCGGG-TCS-----SCEEEEESSGGGHHHHHH-------------------------HHHHTTC--
T ss_pred HHhhhhhcCCEEEEecccC-CCc-----CccEEEEECHHHHhhHHH-------------------------HhhccCc--
Confidence 22 4789998887 54 433 245788888877655410 0000111
Q ss_pred ccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCCHHHHHHHHHHcCcee
Q 001989 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNL 499 (985)
Q Consensus 420 i~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~GI~~ 499 (985)
..+ .+..+..++ +..+..+.+.++.++..++.+++++.|+++.|+++..+...+.+.+..+ .++.++|.++||.+
T Consensus 242 ~~~-~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~--~~~~~~l~~~gi~v 316 (356)
T 1v72_A 242 LSS-KMRFLSAQI--DAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD--SAMIDALLKAGFGF 316 (356)
T ss_dssp CCS-STHHHHHHH--HHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC--HHHHHHHHHTTCBC
T ss_pred hhh-hHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEEEcC--HHHHHHHHhcCeEE
Confidence 111 112222222 2445444566777888899999999999873388764333333444544 47888999999987
Q ss_pred ee--ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 500 RV--VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 500 ~~--~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.. ..++.+|++++..+|++|+++++++|.+
T Consensus 317 ~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 348 (356)
T 1v72_A 317 YHDRWGPNVVRFVTSFATTAEDVDHLLNQVRL 348 (356)
T ss_dssp BCSSSSTTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred eccccCCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 63 2257899999999999999999999975
No 333
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.64 E-value=2.1e-14 Score=166.70 Aligned_cols=272 Identities=11% Similarity=0.126 Sum_probs=182.3
Q ss_pred HHHHHHHHHhcC-----CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 214 LNFQTMIADLTG-----LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 214 ~e~q~~ia~L~g-----~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
.++++.+|++++ .++.++.+++|+|.+++.++.++. ++||+|+++...|+.+...++. .|++++.++.
T Consensus 99 ~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~---~~gd~vl~~~p~~~~~~~~~~~----~g~~~~~~~~ 171 (427)
T 3dyd_A 99 LSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLA---NPGQNILVPRPGFSLYKTLAES----MGIEVKLYNL 171 (427)
T ss_dssp HHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHC---CTTCEEEEEESCCTHHHHHHHH----TTCEEEEEEE
T ss_pred HHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhc---CCCCEEEEcCCCchhHHHHHHH----cCCEEEEEec
Confidence 457789999998 677889999999988887766542 3789999999999988877653 5777776643
Q ss_pred ----------hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCcc-ccC----CCCCCccc
Q 001989 289 ----------KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLA-LTI----LKPPGELG 348 (985)
Q Consensus 289 ----------~~l~~-l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~-lg~----l~~~~~~G 348 (985)
+++++ +++++++|++.+| |.+|.+.| +++|+++|+++|+++++|. ..+ ++. ..+...++
T Consensus 172 ~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~De-ay~~~~~~g~~~~~~~~~~ 250 (427)
T 3dyd_A 172 LPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADE-IYGDMVFSDCKYEPLATLS 250 (427)
T ss_dssp EGGGTTEECHHHHHSSCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEEC-TTTTCBCSSCCCCCGGGGC
T ss_pred ccccCCCCCHHHHHHHhccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEc-CchhhccCCCcCccHHHhC
Confidence 45666 7788999999998 78999998 9999999999999999953 222 111 11112344
Q ss_pred ce---EEEecC-ccccccCCCCCCcEEEEEEch-------hhHhcCCCceeeeeecCCCCcceeeecccccccccccccC
Q 001989 349 AD---IVVGSA-QRFGVPMGYGGPHAAFLATSQ-------EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKAT 417 (985)
Q Consensus 349 aD---i~v~s~-k~lg~P~~~GGP~~G~l~~~~-------~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~at 417 (985)
.| |+++|. |.|+.| |-.+|++++++ ++.+.+. ...+ .+
T Consensus 251 ~~~~vi~~~S~sK~~~~~----G~riG~~~~~~~~~~~~~~i~~~l~-------------------------~~~~--~~ 299 (427)
T 3dyd_A 251 TDVPILSCGGLAKRWLVP----GWRLGWILIHDRRDIFGNEIRDGLV-------------------------KLSQ--RI 299 (427)
T ss_dssp SSCCEEEEEESTTTSSCG----GGCCEEEEEECSTTSSHHHHHHHHH-------------------------HHHH--HH
T ss_pred CCCcEEEEeeccccCCCc----CcceEEEEecCcchhhHHHHHHHHH-------------------------HHHh--cc
Confidence 44 667776 766532 22368888763 2222210 0000 01
Q ss_pred CCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC--CCcceEEEec---C--C-HHHHH
Q 001989 418 SNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL--PFFDTVKVKC---A--D-AHAIA 489 (985)
Q Consensus 418 sni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~~~~~~~~---~--~-~~~v~ 489 (985)
.+ . ..+...++...+.....+.++++.++..++.+++.+.|+++.++++..+ ..+--+.+.. + . ..++.
T Consensus 300 ~~--~-~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~ 376 (427)
T 3dyd_A 300 LG--P-CTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEMEHFPEFENDVEFT 376 (427)
T ss_dssp CC--S-CHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSBTTEEEEEECGGGCTTCSSHHHHH
T ss_pred CC--C-CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEecCHhhcCCCCCHHHHH
Confidence 11 1 1111111112234445667888999999999999999999833887532 2221222321 1 2 67888
Q ss_pred HHHH-HcCceeeee----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 490 SAAY-KIEMNLRVV----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 490 ~~L~-~~GI~~~~~----~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++|. ++||.+... .++.+|++++ +++++|+++++.|.+
T Consensus 377 ~~l~~~~gV~v~~g~~~~~~~~iRis~~--~~~e~i~~~l~~l~~ 419 (427)
T 3dyd_A 377 ERLVAEQSVHCLPATCFEYPNFIRVVIT--VPEVMMLEACSRIQE 419 (427)
T ss_dssp HHHHHHHCEECEEGGGGTCTTEEEEESC--SCHHHHHHHHHHHHH
T ss_pred HHHHHHCCEEEECCcccCCCCeEEEEEC--CCHHHHHHHHHHHHH
Confidence 8885 789988542 2588999986 789999999998874
No 334
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.64 E-value=2.1e-14 Score=163.33 Aligned_cols=272 Identities=12% Similarity=0.066 Sum_probs=181.9
Q ss_pred HHHHHHHHHHhcC--CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001989 213 LLNFQTMIADLTG--LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-- 288 (985)
..++++.+++++| .++.++.+++|+|.++++++.++ . ++||+|+++...|+++...++. .|.+++.++.
T Consensus 65 ~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~l-~--~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~~~~~~ 137 (383)
T 3kax_A 65 GDIICNWTKKQYNWDIQKEWIVFSAGIVPALSTSIQAF-T--KENESVLVQPPIYPPFFEMVTT----NNRQLCVSPLQK 137 (383)
T ss_dssp HHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHH-C--CTTCEEEECSSCCHHHHHHHHH----TTCEEEECCCEE
T ss_pred HHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHh-C--CCCCEEEEcCCCcHHHHHHHHH----cCCEEEecccee
Confidence 3455678888888 66778999999998888777654 2 3789999999999998887653 5777777653
Q ss_pred ---------hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCCC-----CCCc---
Q 001989 289 ---------KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILK-----PPGE--- 346 (985)
Q Consensus 289 ---------~~l~~-l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l~-----~~~~--- 346 (985)
++|++ +++++++|++.+| |.+|.+.| +++|.++|+++|+++++|. ..+..... +...
T Consensus 138 ~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De-~~~~~~~~g~~~~~~~~~~~ 216 (383)
T 3kax_A 138 QNDTYAIDFEHLEKQFQQGVKLMLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADE-IHSDIIYADHTHTPFASLSE 216 (383)
T ss_dssp ETTEEECCHHHHHHHHTTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEEC-TTTTCBCTTCCCCCGGGSCH
T ss_pred cCCcEEEcHHHHHHHhCcCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEEc-cccccccCCCCceeHhhcCc
Confidence 34555 7788999999988 77999865 6777777999999999953 33321111 1112
Q ss_pred --ccceEEEecC-ccccccCCCCCCcEEEEEE-chhhHhcCCCceeeeeecCCCCcceeeeccccccccccccc--CCCc
Q 001989 347 --LGADIVVGSA-QRFGVPMGYGGPHAAFLAT-SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKA--TSNI 420 (985)
Q Consensus 347 --~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~-~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~a--tsni 420 (985)
.+.++++.|. |.++.| |..+|++.+ ++++.+.+... +...+ +.|.
T Consensus 217 ~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~ 267 (383)
T 3kax_A 217 ELAARTITCMAPSKTFNIA----GLQASIIIIPNEKLRQAFTSI-------------------------QYRQGFHGLNI 267 (383)
T ss_dssp HHHTTEEEEECSHHHHTCG----GGCCEEEECCCHHHHHHHHHH-------------------------HHHTTCCCCCH
T ss_pred cccCcEEEEEEChhhccCc----chhheEEEeCCHHHHHHHHHH-------------------------HhhcccCCCCH
Confidence 2455889887 888533 334688887 56666554100 00001 1111
Q ss_pred cchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc-CCCeEEcCCCCcceEEEecC----CHHHHHHHHH-H
Q 001989 421 CTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQGLPFFDTVKVKCA----DAHAIASAAY-K 494 (985)
Q Consensus 421 ~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~----~~~~v~~~L~-~ 494 (985)
....+..+++ ..+.+.++++.++..++.+++.+.|++ ++++++..+...-.+.+.++ +..++.+.|. +
T Consensus 268 ---~~~~a~~~~l---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 341 (383)
T 3kax_A 268 ---FAYTAMQSAY---TECNDWLNEIRFYIEDNAKFACEYIKDHIPTLSVMKPEGSFLLWIDCSALNLSQDERTKLLEEK 341 (383)
T ss_dssp ---HHHHHHHHHT---TTCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCSBSSEEEEECGGGCCCHHHHHHHHHHT
T ss_pred ---HHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCceEEEEEEccccCCCHHHHHHHHHhh
Confidence 1121222211 123445788889999999999999998 53388764311111223332 2889999997 6
Q ss_pred cCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 495 IEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 495 ~GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+||.+... ..+.+|++++ +++++|+++++.|.+
T Consensus 342 ~gi~v~~g~~~~~~~~~~iRi~~~--~~~~~i~~~l~~l~~ 380 (383)
T 3kax_A 342 GKIIVEPGEKYGLGGEEHIGINIG--CPRSVLEEILNRLRH 380 (383)
T ss_dssp SCEECEESGGGCTTCTTEEEEECS--SCHHHHHHHHHHHHH
T ss_pred CCEEeECchhhcCCCCCeEEEEEc--CCHHHHHHHHHHHHH
Confidence 79988642 1478999988 589999999998863
No 335
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.64 E-value=1.7e-15 Score=173.94 Aligned_cols=271 Identities=13% Similarity=0.057 Sum_probs=176.6
Q ss_pred HHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCe--EEEEe-------
Q 001989 216 FQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDI--KVVVS------- 286 (985)
Q Consensus 216 ~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi--~v~~v------- 286 (985)
+++.+++++|.+.+++. +.+||.++++++.++ . ++||+|+++...|+++...+.. ++..|. +.+.+
T Consensus 74 ar~~la~~~g~~~~~i~-~~sGt~a~~~~~~~~-~--~~gd~Vl~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ 148 (407)
T 2dkj_A 74 AIERAKALFGAAWANVQ-PHSGSQANMAVYMAL-M--EPGDTLMGMDLAAGGHLTHGSR-VNFSGKLYKVVSYGVRPDTE 148 (407)
T ss_dssp HHHHHHHHHTCSEEECC-CSSHHHHHHHHHHHH-C--CTTCEEEEECGGGTCCGGGTCT-TSHHHHHSEEEEECCCTTTS
T ss_pred HHHHHHHHhCCCcceEE-ecchHHHHHHHHHHh-c--CCCCEEEEecccccCccchHHH-HHhcCceEEEEecCCCcccC
Confidence 45699999999865553 445565666665544 2 3889999999999887421110 111122 33333
Q ss_pred --Cchhhhc-cC-CCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-----CCCCcccceEEEecC-
Q 001989 287 --DLKDIDY-KS-GDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-----KPPGELGADIVVGSA- 356 (985)
Q Consensus 287 --~~~~l~~-l~-~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-----~~~~~~GaDi~v~s~- 356 (985)
|++++++ +. +++++|++.+|++ |.+.|+++|.++|+++|+++++| +..+.|.. ..+.+ .+|++++|.
T Consensus 149 ~~d~~~l~~~l~~~~~~~v~~~~p~~-~~~~~l~~i~~l~~~~~~~li~D-ea~~~g~~~~~~~~~~~~-~~di~~~s~s 225 (407)
T 2dkj_A 149 LIDLEEVRRLALEHRPKVIVAGASAY-PRFWDFKAFREIADEVGAYLVVD-MAHFAGLVAAGLHPNPLP-YAHVVTSTTH 225 (407)
T ss_dssp SCCHHHHHHHHHHHCCSEEEECCSSC-CSCCCHHHHHHHHHHHTCEEEEE-CTTTHHHHHTTCSCCCTT-TCSEEEEESS
T ss_pred ccCHHHHHHHHhhcCCeEEEEecccc-CCCCCHHHHHHHHHHcCCEEEEE-ccccccccccCccCCccc-cccEEEEecc
Confidence 2345665 65 3789998877754 57889999999999999999995 34343221 11122 379999998
Q ss_pred ccccccCCCCCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHH
Q 001989 357 QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYA 435 (985)
Q Consensus 357 k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l 435 (985)
|+|+ ||.+|+++++ +++.+.+.... .+. ..++.+. ....++.+++
T Consensus 226 K~l~------g~~~G~~~~~~~~~~~~l~~~~---------------------~~~--~~~~~~~---~~~~a~~~al-- 271 (407)
T 2dkj_A 226 KTLR------GPRGGLILSNDPELGKRIDKLI---------------------FPG--IQGGPLE---HVIAGKAVAF-- 271 (407)
T ss_dssp GGGC------CCSCEEEEESCHHHHHHHHHHH---------------------TTT--TCSSCCH---HHHHHHHHHH--
T ss_pred ccCC------CCCceEEEECCHHHHHHHHhhh---------------------ccc--ccCCCcH---HHHHHHHHHH--
Confidence 7553 3334899999 67766541100 000 0112221 1222333333
Q ss_pred HHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-CCcceEEEecC----CHHHHHHHHHHcCceeeee--------
Q 001989 436 VYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCA----DAHAIASAAYKIEMNLRVV-------- 502 (985)
Q Consensus 436 ~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~----~~~~v~~~L~~~GI~~~~~-------- 502 (985)
..+..++++++.++..++.+++.+.|+++| ++++.+ ....-+.+.++ ...++.+.|.++||.+...
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~ 350 (407)
T 2dkj_A 272 FEALQPEFKEYSRLVVENAKRLAEELARRG-YRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKP 350 (407)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSC
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhCC-ceeecCCCCceEEEEECcccCCCHHHHHHHHHHcCceecCCcCcccccc
Confidence 343356889999999999999999999996 888742 22334555554 2778999999999987542
Q ss_pred --cCCeEEEEeccC----CCHHHHHHHHHHHhC
Q 001989 503 --DSNTVTASFDET----TTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 --~~~~lris~t~~----~t~edId~li~aL~~ 529 (985)
.++.+|++++.+ .|++|+++++++|.+
T Consensus 351 ~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~ 383 (407)
T 2dkj_A 351 PRVTSGIRIGTPAITTRGFTPEEMPLVAELIDR 383 (407)
T ss_dssp TTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHH
T ss_pred ccCCCceeeecccccccCCCHHHHHHHHHHHHH
Confidence 146799999864 799999999999874
No 336
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.64 E-value=3.3e-14 Score=166.09 Aligned_cols=304 Identities=13% Similarity=0.111 Sum_probs=192.3
Q ss_pred CCCCCCCCCcHHHHHHHHhCCc--cccccCCChhhHhhhHHHHHHHHHHHHHHh----cCC--CCcceeeccchHHHHHH
Q 001989 172 GMGYYNTHVPPVILRNIMENPA--WYTQYTPYQAEIAQGRLESLLNFQTMIADL----TGL--PMSNASLLDEGTAAAEA 243 (985)
Q Consensus 172 G~g~y~~~~p~~v~~~i~~~~~--~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L----~g~--~~~~~sl~~~~ta~~ea 243 (985)
+.|..+...|+.+.+++.+.-. ....|++. +|.. ++++.+|++ +|. ++.++.+++|++.++++
T Consensus 63 ~~g~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~-----~g~~----~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~ 133 (447)
T 3b46_A 63 GQGFFSYSPPQFAIKEAQKALDIPMVNQYSPT-----RGRP----SLINSLIKLYSPIYNTELKAENVTVTTGANEGILS 133 (447)
T ss_dssp CCCSCSSCCCHHHHHHHHHHTTSGGGGSCCCT-----TCCH----HHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCC-----CCCH----HHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHH
Confidence 4554344456666544443211 13445442 2322 344455555 454 45689999999988887
Q ss_pred HHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC--------------------chhhhc-cCCCEeEEE
Q 001989 244 MAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD--------------------LKDIDY-KSGDVCGVL 302 (985)
Q Consensus 244 ~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~--------------------~~~l~~-l~~~t~~V~ 302 (985)
++.++ . ++||+|++++..|+.+...++. .|.+++.++ +++|++ +++++++|+
T Consensus 134 ~~~~l-~--~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~ 206 (447)
T 3b46_A 134 CLMGL-L--NAGDEVIVFEPFFDQYIPNIEL----CGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVI 206 (447)
T ss_dssp HHHHH-C--CTTCEEEEEESCCTTHHHHHHH----TTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTTEEEEE
T ss_pred HHHHH-c--CCCCEEEEeCCCchhHHHHHHH----cCCEEEEEeCCCccccccccccccCcccCHHHHHHhhccCCeEEE
Confidence 77665 2 3789999999999998887653 466665553 245666 778899999
Q ss_pred EEcC-CCCeee---ccHHHHHHHHHhCCcEEEEEecCccccCC----CC-----CCcccceEEEecC-ccccccCCCCCC
Q 001989 303 VQYP-GTEGEV---LDYGDFIKNAHANGVKVVMATDLLALTIL----KP-----PGELGADIVVGSA-QRFGVPMGYGGP 368 (985)
Q Consensus 303 v~~p-n~~G~v---~di~~I~~~a~~~galliV~a~~~~lg~l----~~-----~~~~GaDi~v~s~-k~lg~P~~~GGP 368 (985)
+.+| |.+|.+ +++++|+++|+++|+++++| +..+.... .+ ++.++.|++++|. |.|+.| |-
T Consensus 207 l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~D-e~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~----G~ 281 (447)
T 3b46_A 207 INTPHNPIGKVFTREELTTLGNICVKHNVVIISD-EVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAAT----GW 281 (447)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE-CTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCT----TS
T ss_pred EeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEe-ccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCc----ch
Confidence 9988 789988 47999999999999999995 33332111 11 1245889999997 877532 22
Q ss_pred cEEEEEE-chhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhH-HHHHHHHHHHHHhC-cchHHH
Q 001989 369 HAAFLAT-SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQA-LLANMAAMYAVYHG-PEGLKT 445 (985)
Q Consensus 369 ~~G~l~~-~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~-l~a~~aa~~l~~~g-~~Gl~~ 445 (985)
-+|++++ ++++++.+... + ... ..+++.. ..++.+++ .... .+.+++
T Consensus 282 riG~~~~~~~~l~~~l~~~----------------------~----~~~--~~~~~~~~~~a~~~aL--~~~~~~~~~~~ 331 (447)
T 3b46_A 282 RIGWVLSLNAELLSYAAKA----------------------H----TRI--CFASPSPLQEACANSI--NDALKIGYFEK 331 (447)
T ss_dssp CCEEEECSCHHHHHHHHHH----------------------H----HHH--TSSCCHHHHHHHHHHH--HHHHHHTHHHH
T ss_pred hhEEEEeCCHHHHHHHHHH----------------------H----hhc--cCCCChHHHHHHHHHH--hCCcchHHHHH
Confidence 3799999 88777654100 0 000 1111122 22222222 2211 334778
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC-----------------C-HHHHHHHHH-HcCceeeee----
Q 001989 446 IAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA-----------------D-AHAIASAAY-KIEMNLRVV---- 502 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-----------------~-~~~v~~~L~-~~GI~~~~~---- 502 (985)
+.++..++.+++.+.|+++| +++..+....-+.++++ . ..++.++|. ++||.+...
T Consensus 332 ~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~ 410 (447)
T 3b46_A 332 MRQEYINKFKIFTSIFDELG-LPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFY 410 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-CCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHCC-CeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhC
Confidence 88899999999999999886 77653211111223322 2 568888886 579987432
Q ss_pred -------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 -------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+.+|+|+. .++++|++.++.|..
T Consensus 411 ~~~~~~~~~~~iRls~~--~~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 411 IKEHEKAAENLLRFAVC--KDDAYLENAVERLKL 442 (447)
T ss_dssp CGGGGGGGTTEEEEECC--SCHHHHHHHHHHGGG
T ss_pred CCCccCCCCCEEEEEEe--CCHHHHHHHHHHHHH
Confidence 1578999998 489999999998874
No 337
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.64 E-value=5.1e-14 Score=157.71 Aligned_cols=292 Identities=10% Similarity=0.056 Sum_probs=195.4
Q ss_pred cCCCCCCCCCcHHHHHHHHhCC--ccccccCCChhhHhhhHHHHHHHHHHHHHHhcC---CCCcceeeccchHHHHHHHH
Q 001989 171 IGMGYYNTHVPPVILRNIMENP--AWYTQYTPYQAEIAQGRLESLLNFQTMIADLTG---LPMSNASLLDEGTAAAEAMA 245 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~--~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g---~~~~~~sl~~~~ta~~ea~~ 245 (985)
++.|.++...|+.+.+++.+.- .-...|.. .+ ..++++.+|+++| .++.++.+++|+|.+++.++
T Consensus 24 l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~----~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~ 93 (335)
T 1uu1_A 24 LALNENPFPFPEDLVDEVFRRLNSDALRIYYD------SP----DEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMM 93 (335)
T ss_dssp ESSCCCSSCCCHHHHHHHHHTCCGGGGGSCCC------SS----CHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC------Cc----hHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHH
Confidence 4555555556777765655432 11222321 11 4567889999999 78888999999997777655
Q ss_pred HHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchh-----hhccCCCEeEEEEEcC-CCCeeeccHHHHH
Q 001989 246 MCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKD-----IDYKSGDVCGVLVQYP-GTEGEVLDYGDFI 319 (985)
Q Consensus 246 ~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~~-----l~~l~~~t~~V~v~~p-n~~G~v~di~~I~ 319 (985)
.++ ||+|+++ ..|+.+...++. .|.+++.++.++ ++++ +++++|++.+| |.+|.+.|.+++.
T Consensus 94 ~~~------gd~Vl~~-p~y~~~~~~~~~----~g~~~~~v~~~~~~~~d~~~l-~~~~~v~l~~p~nptG~~~~~~~l~ 161 (335)
T 1uu1_A 94 LMF------DRSVFFP-PTYSCYRIFAKA----VGAKFLEVPLTKDLRIPEVNV-GEGDVVFIPNPNNPTGHVFEREEIE 161 (335)
T ss_dssp HHS------SEEEECS-SSCHHHHHHHHH----HTCEEEECCCCTTSCCCCCCC-CTTEEEEEESSCTTTCCCCCHHHHH
T ss_pred HHh------CCcEEEC-CCcHHHHHHHHH----cCCeEEEeccCCCCCCCHHHc-CCCCEEEEeCCCCCCCCCCCHHHHH
Confidence 543 6899999 999998877653 488888887641 2225 67899998988 7899999999999
Q ss_pred HHHHhCCcEEEEEecCcc-ccC---CCCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecC
Q 001989 320 KNAHANGVKVVMATDLLA-LTI---LKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDS 394 (985)
Q Consensus 320 ~~a~~~galliV~a~~~~-lg~---l~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~ 394 (985)
++++.+| ++++| +..+ +.. +...+.++.|++++|. |.|+.| |..+|++++++++.+.+...
T Consensus 162 ~l~~~~~-~li~D-e~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~l~~~-------- 227 (335)
T 1uu1_A 162 RILKTGA-FVALD-EAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLA----AQRVGYVVASEKFIDAYNRV-------- 227 (335)
T ss_dssp HHHHTTC-EEEEE-CTTHHHHCCCCGGGGGTCSSEEEEEESTTTTTCG----GGCCEEEEECHHHHHHHHHH--------
T ss_pred HHHHhCC-EEEEE-CcchhhcchhHHHHhhhCCCEEEEecchhhcCCc----ccCeEEEEeCHHHHHHHHHh--------
Confidence 9999998 77774 3333 211 1112346778999997 776432 23369999988877654100
Q ss_pred CCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCC
Q 001989 395 SGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPF 474 (985)
Q Consensus 395 ~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~ 474 (985)
+...+.|. ....+..++ +.. .+.++++.++..++.+++.+.|+++| +++... .
T Consensus 228 ------------------~~~~~~~~---~~~~~~~~~--l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~-~ 280 (335)
T 1uu1_A 228 ------------------RLPFNVSY---VSQMFAKVA--LDH--REIFEERTKFIVEERERMKSALREMG-YRITDS-R 280 (335)
T ss_dssp ------------------SCTTCSCH---HHHHHHHHH--HHT--HHHHHHHHHHHHHHHHHHHHHHHHHT-CCBCCC-C
T ss_pred ------------------cCCCCcCH---HHHHHHHHH--hCC--HHHHHHHHHHHHHHHHHHHHHHHHCC-cEEcCC-C
Confidence 00001111 112222222 222 34678888899999999999999886 765422 1
Q ss_pred cceEEEecCC--HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 475 FDTVKVKCAD--AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 475 ~~~~~~~~~~--~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..-+.+..++ ..++.+.|.++||.+.. .++.+|+|++ +.+|+++++++|+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~gi~v~~-~~~~iRis~~---~~~~i~~~~~~l~~ 333 (335)
T 1uu1_A 281 GNFVFVFMEKEEKERLLEHLRTKNVAVRS-FREGVRITIG---KREENDMILRELEV 333 (335)
T ss_dssp SSEEEEECCTHHHHHHHHHHHHHTEEEEE-ETTEEEEECC---CHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCHHHHHHHHHHCCEEEEE-CCCeEEEEeC---CHHHHHHHHHHHHh
Confidence 2234566664 67899999999999876 4678999985 57899999999974
No 338
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.64 E-value=2.1e-14 Score=165.34 Aligned_cols=268 Identities=13% Similarity=0.138 Sum_probs=179.7
Q ss_pred HHHHHHHhc------CCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-
Q 001989 216 FQTMIADLT------GLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL- 288 (985)
Q Consensus 216 ~q~~ia~L~------g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~- 288 (985)
+++.+|+++ +.++.++.+++|+|.+++.++.++ . ++||+|+++...|+++...++. .|++++.++.
T Consensus 83 l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l-~--~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~v~~~ 155 (406)
T 1xi9_A 83 LRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGAL-L--DPGDEILVPGPSYPPYTGLVKF----YGGKPVEYRTI 155 (406)
T ss_dssp HHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH-C--CTTCEEEEEESCCHHHHHHHHH----TTCEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHh-C--CCCCEEEEcCCCCccHHHHHHH----cCCEEEEeecC
Confidence 445555555 355678999999998888777654 2 3789999999999998887753 4777766643
Q ss_pred ---------hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCCC----CCCc--cc
Q 001989 289 ---------KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILK----PPGE--LG 348 (985)
Q Consensus 289 ---------~~l~~-l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l~----~~~~--~G 348 (985)
++|++ +++++++|++.+| |++|.+.+ +++|.++|+++|+++++|. ..+.+... +... .+
T Consensus 156 ~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~ 234 (406)
T 1xi9_A 156 EEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDE-IYDLMTYEGEHISPGSLTKD 234 (406)
T ss_dssp GGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEEC-TTTTCBSSSCCCCHHHHCSS
T ss_pred CCcCCcCCHHHHHHhhCcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEc-CccccccCCCCCCHHHcCCC
Confidence 34555 7778999999988 78998864 9999999999999999953 33322211 1122 36
Q ss_pred c-eEEEecC-ccccccCCCCCCcEEEEE--Ech----hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCc
Q 001989 349 A-DIVVGSA-QRFGVPMGYGGPHAAFLA--TSQ----EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNI 420 (985)
Q Consensus 349 a-Di~v~s~-k~lg~P~~~GGP~~G~l~--~~~----~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni 420 (985)
. |++++|. |.|+.| |..+|+++ +++ ++++.+.. .+....+.|.
T Consensus 235 ~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~~l~~~l~~-------------------------~~~~~~~~~~ 285 (406)
T 1xi9_A 235 VPVIVMNGLSKVYFAT----GWRLGYMYFVDPENKLSEVREAIDR-------------------------LARIRLCPNT 285 (406)
T ss_dssp SCEEEEEESTTTTCCG----GGCCEEEEEECTTCTTHHHHHHHHH-------------------------HHHHTCCSCS
T ss_pred ceEEEEeccccccCCC----ccEEEEEEEecCchhHHHHHHHHHH-------------------------HHHhhcCCCH
Confidence 6 8999997 877422 22368888 777 66654410 0000011111
Q ss_pred cchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEE-EecC-----CHHHHHHHHH-
Q 001989 421 CTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVK-VKCA-----DAHAIASAAY- 493 (985)
Q Consensus 421 ~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~-~~~~-----~~~~v~~~L~- 493 (985)
....++.++ +. .+.++++++.++..++.+++.+.|+++.++++..+. ..-+. +..+ +..++.+.|.
T Consensus 286 ---~~~~a~~~~--l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~ 358 (406)
T 1xi9_A 286 ---PAQFAAIAG--LT-GPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQ-GAFYIFPKIEVGPWKNDKEFVLDVLH 358 (406)
T ss_dssp ---HHHHHHHHH--HH-SCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCC-BSSEECCEECSCSCSSHHHHHHHHHH
T ss_pred ---HHHHHHHHH--Hh-CCcHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCC-eeEEEEEecCccCCCCHHHHHHHHHH
Confidence 122222222 22 345668889999999999999999998338876421 11121 1222 2788998887
Q ss_pred HcCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 494 KIEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 494 ~~GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++||.+... .++.+|++++ +++++|+++++.|.+
T Consensus 359 ~~gi~v~~g~~f~~~~~~~lRis~~--~~~~~i~~~~~~l~~ 398 (406)
T 1xi9_A 359 NAHVLFVHGSGFGEYGAGHFRAVFL--PPIEILEEAMDRFEK 398 (406)
T ss_dssp HHCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHH
T ss_pred hCCEEEeCchhcCCCCCCEEEEEec--CCHHHHHHHHHHHHH
Confidence 889987542 1578999998 899999999998874
No 339
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.64 E-value=1.7e-14 Score=163.93 Aligned_cols=271 Identities=14% Similarity=0.113 Sum_probs=183.8
Q ss_pred HHHHHHHHhc-CCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-----
Q 001989 215 NFQTMIADLT-GLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----- 288 (985)
Q Consensus 215 e~q~~ia~L~-g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----- 288 (985)
++++.+|+++ +.++.++.+++|+|.+++.++.++ . ++||+|+++...|+++...++. .|.+++.++.
T Consensus 67 ~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l-~--~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~v~~~~~~~ 139 (375)
T 3op7_A 67 AFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSL-I--EPGDHVISLYPTYQQLYDIPKS----LGAEVDLWQIEEENG 139 (375)
T ss_dssp HHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHH-C--CTTCEEEEEESSCTHHHHHHHH----TTCEEEEEEEEGGGT
T ss_pred HHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHh-c--CCCCEEEEeCCCchhHHHHHHH----cCCEEEEEeccccCC
Confidence 5778999988 577788999999998888777665 2 3889999999999998887653 5777766543
Q ss_pred -----hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCCCC-C---CcccceEEEe
Q 001989 289 -----KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILKP-P---GELGADIVVG 354 (985)
Q Consensus 289 -----~~l~~-l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l~~-~---~~~GaDi~v~ 354 (985)
++|++ +++++++|++++| |.+|.+.| +++|.++|+++|+++++|. ..+...... + ..++.+++++
T Consensus 140 ~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~i~~~ 218 (375)
T 3op7_A 140 WLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDE-VYRSFSELDVPSIIEVYDKGIAVN 218 (375)
T ss_dssp TEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEEC-CSCCCSSSCCCCHHHHCTTEEEEE
T ss_pred CCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEc-ccccccccCCCchhhhcCCEEEEe
Confidence 45666 7889999999988 78999999 9999999999999999953 323211111 1 2356678888
Q ss_pred cC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH
Q 001989 355 SA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 355 s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~ 433 (985)
|. |.++.| |..+|++.+++++.+.+... ++ . ...+++ .+...++..
T Consensus 219 s~sK~~~~~----G~r~G~v~~~~~l~~~~~~~-------------------------~~-~--~~~~~~-~~~~~~~~~ 265 (375)
T 3op7_A 219 SLSKTYSLP----GIRIGWVAANHQVTDILRDY-------------------------RD-Y--TMICAG-VFDDLVAQL 265 (375)
T ss_dssp ESSSSSSCG----GGCCEEEECCHHHHHHHTTT-------------------------GG-G--TTSCCC-HHHHHHHHH
T ss_pred EChhhcCCc----ccceEEEEeCHHHHHHHHHH-------------------------Hh-h--hccCCC-cHHHHHHHH
Confidence 87 877533 23458998888887765210 00 0 111111 121111111
Q ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC--CcceEEEecCC-HHHHHHHH-HHcCceeeeec----CC
Q 001989 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP--FFDTVKVKCAD-AHAIASAA-YKIEMNLRVVD----SN 505 (985)
Q Consensus 434 ~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~--~~~~~~~~~~~-~~~v~~~L-~~~GI~~~~~~----~~ 505 (985)
.+. ...+.++++.++..++.+++.+.|++.+++++..+. .+.-+.+..+. ..++.++| .++||.+.... ++
T Consensus 266 ~l~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~ 344 (375)
T 3op7_A 266 ALA-HYQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQEHGVLLVPGNRFERDG 344 (375)
T ss_dssp HHH-THHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSSCHHHHHHHHHHHHCEECEEGGGGTCTT
T ss_pred HHh-ccHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCCCHHHHHHHHHHhCCEEEeChhhhCCCC
Confidence 122 123346777777788999999999987448776322 22223333333 77888887 57899875431 58
Q ss_pred eEEEEeccCCCHHHHHHHHHHHhC
Q 001989 506 TVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 506 ~lris~t~~~t~edId~li~aL~~ 529 (985)
.+|++++. +.++|+++++.|.+
T Consensus 345 ~iRi~~~~--~~~~i~~~l~~l~~ 366 (375)
T 3op7_A 345 YVRLGFAC--EQETLIKGLEKLSQ 366 (375)
T ss_dssp EEEECCCS--CHHHHHHHHHHHHH
T ss_pred eEEEEecC--CHHHHHHHHHHHHH
Confidence 89999775 44899999988874
No 340
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.64 E-value=6.7e-16 Score=174.38 Aligned_cols=288 Identities=13% Similarity=0.070 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCC--EEEEcCCCCcccH---HHHHHCCcEEEEEc
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRN--VCIIPVSAHGTNP---ATAAMCGMKIVSVG 708 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~--~IIv~~~~Hg~~~---~~a~~~G~~vv~v~ 708 (985)
..++++++++++|.+.. ++.++|+++++.++.++.. +++ .|+++...|.... ..+...|++++.+|
T Consensus 50 ~~~l~~~la~~~~~~~~-i~~~~g~~a~~~a~~~~~~--------~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~ 120 (359)
T 3pj0_A 50 IEDFETKIAKILGKQSA-VFFPSGTMAQQIALRIWAD--------RKENRRVAYHPLSHLEIHEQDGLKELQQITPLLLG 120 (359)
T ss_dssp HHHHHHHHHHHHTCSEE-EEESCHHHHHHHHHHHHHH--------HHTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECS
T ss_pred HHHHHHHHHHHhCCCcE-EEeCCHHHHHHHHHHHHHh--------cCCCcEEEEeccceeeehhcchHHHhcCceEEecC
Confidence 56788999999998775 4457888877655554432 223 3566655543221 12246799999998
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCc-cccc--cCHHHHHHHHHHcCCEEEEEcccccccc-CCC-CC--C
Q 001989 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STH-GVYE--EGIDEICKIIHDNGGQVYMDGANMNAQV-GLT-SP--G 780 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~-G~i~--~di~eI~~la~~~galliVD~a~~~~~~-~l~-~p--g 780 (985)
. +++.+|+++|+++ . +++++|++++| |++ |.+. .++++|+++|+++|+++|+|+++..... ... .+ -
T Consensus 121 ~-~~~~~d~~~l~~~-~---~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~ 195 (359)
T 3pj0_A 121 T-ANQLLTIDDIKSL-R---EPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEI 195 (359)
T ss_dssp C-TTSCCCHHHHHTC-S---SCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHH
T ss_pred C-cCCCcCHHHHHhc-c---CCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHh
Confidence 7 5688999999987 4 78999999999 455 6775 1355559999999999999998742211 011 11 1
Q ss_pred ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHH
Q 001989 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 781 ~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l 860 (985)
..++|+++.++||+|+ ||+.|+++.++++.+.+.... .. ..++..+. .. .+.++.+.+
T Consensus 196 ~~~~d~~~~s~sK~~~------~~~gg~~~~~~~l~~~~~~~~-~~-----------~~~~~~~~---~~-~~~a~~~~l 253 (359)
T 3pj0_A 196 CALFDSVYVSFYKGIG------GIAGAILAGNDDFVQEAKIWK-RR-----------YGGDLISL---YP-YILSADYYF 253 (359)
T ss_dssp HTTCSEEEEESSSTTC------CSSCEEEEECHHHHHHHHHHH-HH-----------TTCCCSCC---HH-HHHHHHHHH
T ss_pred hccCCEEEEeccccCC------CcceEEEECCHHHHHHHHHHH-HH-----------hCCCcchh---HH-HHHHHHHHH
Confidence 2367999999999885 343488888877665442100 00 00011110 11 112222333
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhhccCCeee-cCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-
Q 001989 861 AMMGSKGLTEASKIAILNANYMAKRLEKHYPILF-RGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS- 938 (985)
Q Consensus 861 ~~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~-~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~- 938 (985)
... + +..++..++++++.+.|++..++.+ ..+.... .+.+.++.. .+.+..++.+.|.++||.+....
T Consensus 254 ~~~----~-~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~--~~~~~~~~~---~~~~~~~l~~~l~~~GV~v~~g~~ 323 (359)
T 3pj0_A 254 EKR----I-GKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSN--MFHVYFENS---ADEIGAILTKIQDETGVGISGYLQ 323 (359)
T ss_dssp HHH----G-GGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSS--EEEEEESSC---HHHHHHHHHHHHHHHCEECCSCCE
T ss_pred HHH----H-HHhHHHHHHHHHHHHHHhhCCCceeeccCCcce--EEEEEecCc---cchhHHHHHHHHHhcCcEecCCcc
Confidence 221 1 3334567788899999987333322 1111222 234555410 01235788999999999876532
Q ss_pred C--CCCCEEEEeccC---CCCHHHHHHHHccCChhH
Q 001989 939 W--PVPGTLMIEPTE---SESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 939 ~--p~~~~lris~t~---~~t~eeId~~~~~~~l~~ 969 (985)
+ +..+.+|+++.. ..+.+++++ .++.|.+
T Consensus 324 ~~~~~~~~~r~~i~~~~~~~~~e~l~~--~l~~l~~ 357 (359)
T 3pj0_A 324 EKSADVCAFEVSVGDAFAEIPAKNLEL--VFRCLEK 357 (359)
T ss_dssp EEETTEEEEEEECCTTGGGSCHHHHHH--HHHHHHH
T ss_pred ccCCCceEEEEEecCccccCCHHHHHH--HHHHHHh
Confidence 2 223578998863 367888888 5454443
No 341
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.64 E-value=6.1e-15 Score=169.70 Aligned_cols=272 Identities=16% Similarity=0.118 Sum_probs=181.8
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHh-hcCCCeEEEEeCch--
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITR-ADGFDIKVVVSDLK-- 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~-a~~~gi~v~~v~~~-- 289 (985)
..++++.+|++.|.+ .+.++.+|++++++ ++++ . ++||+|++++..|+.....+..+ .+..|++++.++.+
T Consensus 69 ~~~l~~~la~l~g~~--~~~~~~sG~~Ai~~-~~~l-~--~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~ 142 (400)
T 3nmy_A 69 RFAYERCVAALEGGT--RAFAFASGMAATST-VMEL-L--DAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTDP 142 (400)
T ss_dssp HHHHHHHHHHHHTCS--EEEEESSHHHHHHH-HHTT-S--CTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTTSH
T ss_pred HHHHHHHHHHHhCCC--CEEEecCHHHHHHH-HHHH-c--CCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCCCH
Confidence 345778999999987 36677888888776 3332 2 38899999999999888887665 55579999999764
Q ss_pred -hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCC
Q 001989 290 -DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 290 -~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
++++ ++++|++|++.+| |.+|.+.|+++|+++||++|++++|| +.++.+....|.++|+|+++.|. |.|++|
T Consensus 143 ~~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livD-e~~~~~~~~~~~~~g~div~~S~sK~l~g~--- 218 (400)
T 3nmy_A 143 AAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVD-NTFASPMLQRPLSLGADLVVHSATKYLNGH--- 218 (400)
T ss_dssp HHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEE-CTTTHHHHCCGGGGTCSEEEEETTTTTTCS---
T ss_pred HHHHHHhccCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEE-CCCcccccCChhhcCCcEEEecCccccCCC---
Confidence 4556 8889999999988 78999999999999999999999995 45555555567789999999998 877653
Q ss_pred CCCcEE-EEEE-chhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchH
Q 001989 366 GGPHAA-FLAT-SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGL 443 (985)
Q Consensus 366 GGP~~G-~l~~-~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl 443 (985)
|.+-.| ++.+ ++++.+++.. .++.-+ +.. .++. +. +...+.+.+
T Consensus 219 g~~~gG~~vv~~~~~~~~~l~~-------------------------~~~~~g--~~~--~~~~---a~--~~l~~l~~l 264 (400)
T 3nmy_A 219 SDMVGGIAVVGDNAELAEQMAF-------------------------LQNSIG--GVQ--GPFD---SF--LALRGLKTL 264 (400)
T ss_dssp SSCCCEEEEECSCHHHHHHHHH-------------------------HHHHHC--CBC--CHHH---HH--HHHHHHTTH
T ss_pred CCcceeEEEEeCCHHHHHHHHH-------------------------HHHhcC--CCC--CHHH---HH--HHHHhHhHH
Confidence 112235 3433 4555544310 000001 000 1111 11 122233456
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEc-CC-----C-----------CcceEEEecCC----HHHHHHHHHHcCceee--
Q 001989 444 KTIAQRVHGLAGTFALGLKKLGTVEVQ-GL-----P-----------FFDTVKVKCAD----AHAIASAAYKIEMNLR-- 500 (985)
Q Consensus 444 ~~i~~~~~~~a~~l~~~L~~~g~~~~~-~~-----~-----------~~~~~~~~~~~----~~~v~~~L~~~GI~~~-- 500 (985)
+...++..+++.++.+.|++...++-+ .+ + ...-+.|.+++ +..+.+.|.-.++-++
T Consensus 265 ~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G 344 (400)
T 3nmy_A 265 PLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTELFTLAESLG 344 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHHCSSSEECSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHcCCcceEecCCC
Confidence 777788899999999999987545533 11 1 12346677765 2333333332221110
Q ss_pred -------------------------eecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 501 -------------------------VVDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 501 -------------------------~~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
.+.++.+|+|++..++++.|+.|.++|.
T Consensus 345 ~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~~~dli~dl~~al~ 397 (400)
T 3nmy_A 345 GVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGDLRGDLERALV 397 (400)
T ss_dssp SSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred CCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHHHHHHHHHh
Confidence 0124789999999988888888888886
No 342
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.45 E-value=1.5e-17 Score=194.37 Aligned_cols=340 Identities=12% Similarity=0.079 Sum_probs=204.7
Q ss_pred HHHHHHHHHHHhccccCcccccccccccccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHh-CCC
Q 001989 570 EHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTIT-GFD 648 (985)
Q Consensus 570 e~e~~~~l~~l~~~~~~~~~~~~~lG~~t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~-G~~ 648 (985)
+.+..+|++..++-. ...||++++.+..+...+... .....+|. +...++++.|++++ +.+
T Consensus 96 D~dG~~yiD~~~~~~------~~~lGh~~p~V~~Av~~q~~~--~~~~~~~~----------~~~~~Lae~L~~~~p~~~ 157 (465)
T 2yky_A 96 DVDGHAYVNFLGEYT------AGLFGHSHPVIRAAVERALAV--GLNLSTQT----------ENEALFAEAVCDRFPSID 157 (465)
Confidence 355667777654322 346898888877665544322 11112222 22457888999998 443
Q ss_pred ccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHH---HHCCc--EEEEEcCCCCCCCCHHHHHH
Q 001989 649 SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATA---AMCGM--KIVSVGTDAKGNINIEELRK 722 (985)
Q Consensus 649 ~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a---~~~G~--~vv~v~~d~~g~iD~e~L~~ 722 (985)
. .++.+||++|+++++.++|.+ .++++||+ ...+||...... ...|+ .++.+|. .|+++|++
T Consensus 158 ~-v~~~nSGseA~~~Aik~ar~~------tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-----~d~~~l~~ 225 (465)
T 2yky_A 158 L-VRFTNSGTEANLMALATATAI------TGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-----NDVEGTAD 225 (465)
Confidence 3 466789999998888877654 34567777 456787654433 12344 3444444 38999999
Q ss_pred HHHhcCCCEEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccC-CCCCCcc--CCcEEEeCCcccc
Q 001989 723 AAEANRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVG-LTSPGYI--GADVCHLNLHKTF 795 (985)
Q Consensus 723 ~i~~~~~~t~~Vvv~~p-n~~G~i~~---di~eI~~la~~~galliVD~a~~~~~~~-l~~pg~~--g~Di~~~s~hK~l 795 (985)
+++++.+++++|+++.. +.+|++.+ .+++|.++|+++|+++|+|+++. .-.+ +.....+ .+|+++ +.|++
T Consensus 226 ~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pDi~t--~sK~l 302 (465)
T 2yky_A 226 LLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISADLTT--LGKYI 302 (465)
Confidence 99754457888887653 45787651 29999999999999999999985 2111 0001111 267764 45887
Q ss_pred cccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHH
Q 001989 796 CIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIA 875 (985)
Q Consensus 796 ~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~ 875 (985)
+ ||..+|++++++++.+.+.....+. ....+++.++++.++++.+.|..+..+++ .++.
T Consensus 303 g-----~G~piG~v~~~~~i~~~l~~~~~g~-------------~~~~~T~~~npla~aAa~aaL~~l~~~~~---~~~~ 361 (465)
T 2yky_A 303 G-----GGMSFGAFGGRRDLMERFDPARDGA-------------FAHAGTFNNNILTMSAGHAALTQIYTRQA---ASDL 361 (465)
Confidence 4 3566889999988876654310000 00111233455556666677777755543 4566
Q ss_pred HHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecC--c---c---ccCCCCHHHHHHHHHHCCCccCCCCCCCC
Q 001989 876 ILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRG--L---K---NTAGIEPEDVAKRLMDYGFHGPTMSWPVP 942 (985)
Q Consensus 876 ~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~--~---~---~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~ 942 (985)
.++.++++++|++. +++. ..+ .+.. +.+.+.. . . .........+.+.|.++|+++....++
T Consensus 362 ~~~~~~l~~~L~~~~~~~~~~~~v~g-~G~~---~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~~~-- 435 (465)
T 2yky_A 362 SASGDRFRANLNRIAVENQAPLQFTG-LGSL---GTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRGMY-- 435 (465)
Confidence 77788888888752 2221 111 1211 1222210 0 0 000011457888899999988654432
Q ss_pred CEEEEeccCCCCHHHHHHHHccCChhHHHHhhcc
Q 001989 943 GTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKM 976 (985)
Q Consensus 943 ~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~ 976 (985)
. ++..+|++|||+ ++++|+++++++++
T Consensus 436 -~----~s~~~t~edid~--~l~~l~~~l~~~~~ 462 (465)
T 2yky_A 436 -A----LSLEIADAGRDA--FAEALADFIGEQRA 462 (465)
Confidence 1 556799999999 88999998887654
No 343
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.64 E-value=1e-14 Score=166.55 Aligned_cols=269 Identities=12% Similarity=0.088 Sum_probs=180.1
Q ss_pred HHHHHHHHhc----CC--CCcc-eeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC
Q 001989 215 NFQTMIADLT----GL--PMSN-ASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD 287 (985)
Q Consensus 215 e~q~~ia~L~----g~--~~~~-~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~ 287 (985)
++++.+|+++ |. ++.+ +.+++|+|.+++.++.++ . ++||+|++++..|+++...++. .|++++.++
T Consensus 67 ~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~-~--~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~v~ 139 (389)
T 1gd9_A 67 ELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAF-L--KDGEEVLIPTPAFVSYAPAVIL----AGGKPVEVP 139 (389)
T ss_dssp HHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTT-C--CTTCEEEEEESCCTTHHHHHHH----HTCEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHh-C--CCCCEEEEcCCCchhHHHHHHH----CCCEEEEec
Confidence 3555666666 84 5667 889999998877766544 2 3789999999999998887753 467777664
Q ss_pred c----------hhhhc-cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCC-----CCC--
Q 001989 288 L----------KDIDY-KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK-----PPG-- 345 (985)
Q Consensus 288 ~----------~~l~~-l~~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~-----~~~-- 345 (985)
. ++|++ +++++++|++.+| |.+|.+. ++++|+++|+++|+++++| +..+.+... +..
T Consensus 140 ~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~D-e~~~~~~~~~~~~~~~~~~ 218 (389)
T 1gd9_A 140 TYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISD-EVYEHFIYDDARHYSIASL 218 (389)
T ss_dssp CCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE-CTTTTCBCTTCCCCCGGGS
T ss_pred cCCccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe-hhhhhcccCCCCCCCHhhc
Confidence 3 34555 7778999999888 6799886 6999999999999999995 333332221 111
Q ss_pred --cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccc
Q 001989 346 --ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT 422 (985)
Q Consensus 346 --~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t 422 (985)
..+.|++++|. |.|+.| |-.+|++++++++++.+.... ...+ .+.
T Consensus 219 ~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~~~~--------------------------~~~~--~~~ 266 (389)
T 1gd9_A 219 DGMFERTITVNGFSKTFAMT----GWRLGFVAAPSWIIERMVKFQ--------------------------MYNA--TCP 266 (389)
T ss_dssp TTCGGGEEEEEESTTTTTCG----GGCCEEEECCHHHHHHHHHHH--------------------------TTTT--CSC
T ss_pred cCCCCCEEEEecChhhcCCc----ccceEEEEECHHHHHHHHHHH--------------------------hhhc--cCC
Confidence 25789999998 766422 222699999888776541100 0001 111
Q ss_pred hh-HHHHHHHHHHHHHhCcc--hHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC----CHHHHHHHHH-H
Q 001989 423 AQ-ALLANMAAMYAVYHGPE--GLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA----DAHAIASAAY-K 494 (985)
Q Consensus 423 ~~-~l~a~~aa~~l~~~g~~--Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~----~~~~v~~~L~-~ 494 (985)
+. ...+..++ +. .+.+ +++++.++..++.+++.+.|+++| +++..+....-+.+..+ ++.++.+.|. +
T Consensus 267 ~~~~~~a~~~~--l~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 342 (389)
T 1gd9_A 267 VTFIQYAAAKA--LK-DERSWKAVEEMRKEYDRRRKLVWKRLNEMG-LPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKE 342 (389)
T ss_dssp CHHHHHHHHHH--HT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH--Hh-CCCcchHHHHHHHHHHHHHHHHHHHHHHcC-CeecCCCeeeEEEEeccCCCCCHHHHHHHHHHh
Confidence 11 11122222 11 1233 678888999999999999999986 77653211111223443 2788999998 8
Q ss_pred cCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 495 IEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 495 ~GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+||.+... .++.+|++++. ++++|+++++.|.+
T Consensus 343 ~gi~v~~g~~~~~~~~~~iRi~~~~--~~~~i~~~l~~l~~ 381 (389)
T 1gd9_A 343 ARVAVVPGSAFGKAGEGYVRISYAT--AYEKLEEAMDRMER 381 (389)
T ss_dssp TCEECEEGGGGCGGGTTBEEEECCS--CHHHHHHHHHHHHH
T ss_pred CCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 89987542 15789999985 89999999998874
No 344
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.64 E-value=7.7e-15 Score=169.07 Aligned_cols=274 Identities=11% Similarity=0.045 Sum_probs=174.6
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHh-hcCCCeEEEEeC-----
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITR-ADGFDIKVVVSD----- 287 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~-a~~~gi~v~~v~----- 287 (985)
..+++.+++++|.+.+++.+ .+||.++++++.++ . ++||+|+++...|+++....... ..+.+++++.++
T Consensus 74 ~~~~~~la~~~g~~~~~i~~-~sGt~a~~~~~~~~-~--~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 149 (417)
T 3n0l_A 74 TLAIERCKKLFNCKFANVQP-NSGSQANQGVYAAL-I--NPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDG 149 (417)
T ss_dssp HHHHHHHHHHHTCSEEECCC-SSHHHHHHHHHHHH-S--CTTCEEEEECC----------------CCSEEEEECCCTTS
T ss_pred HHHHHHHHHHhCCCCcceEe-ccHHHHHHHHHHHh-c--CCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCC
Confidence 34667999999998876655 44577777766554 2 38999999999998776532211 123455555543
Q ss_pred ---chhhhc-cC-CCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-----CCCCcccceEEEecC-
Q 001989 288 ---LKDIDY-KS-GDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-----KPPGELGADIVVGSA- 356 (985)
Q Consensus 288 ---~~~l~~-l~-~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-----~~~~~~GaDi~v~s~- 356 (985)
+++|++ ++ +++++|++.+|| .|.+.|+++|.++|+++|+++++| +.++.|.. ..+.. ++||+++|.
T Consensus 150 ~~d~~~l~~~i~~~~~~~v~~~~~~-~G~~~~l~~i~~l~~~~~~~li~D-ea~~~g~~~~~~~~~~~~-~~di~~~s~s 226 (417)
T 3n0l_A 150 RIDYEKVREIAKKEKPKLIVCGASA-YARVIDFAKFREIADEIGAYLFAD-IAHIAGLVVAGEHPSPFP-YAHVVSSTTH 226 (417)
T ss_dssp SCCHHHHHHHHHHHCCSEEEECCSS-CCSCCCHHHHHHHHHHHTCEEEEE-CTTTHHHHHTTSSCCCTT-TCSEEEEESS
T ss_pred CcCHHHHHHHHHhcCCeEEEECCcc-cCccCCHHHHHHHHHHcCCEEEEE-CccchhhhhcccCCCccc-cceEEEeeCc
Confidence 355666 65 578999988888 499999999999999999999995 33333322 11111 589999998
Q ss_pred ccccccCCCCCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHH
Q 001989 357 QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYA 435 (985)
Q Consensus 357 k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l 435 (985)
|.|+ ||.+|+++++ +++.+.+... +..++..-..+....++.+++
T Consensus 227 K~l~------g~~~G~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~aa~~~a~-- 272 (417)
T 3n0l_A 227 KTLR------GPRGGIIMTNDEELAKKINSA--------------------------IFPGIQGGPLMHVIAAKAVGF-- 272 (417)
T ss_dssp TTTC------SCSCEEEEESCHHHHHHHHHH--------------------------HTTTTCSSCCHHHHHHHHHHH--
T ss_pred cccC------CCCeeEEEECCHHHHHHHhhh--------------------------hCCcccCCcHHHHHHHHHHHH--
Confidence 7664 3335899888 5666554100 000111111112333333332
Q ss_pred HHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-CCcceEEEecC--C--HHHHHHHHHHcCceeeee--------
Q 001989 436 VYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCA--D--AHAIASAAYKIEMNLRVV-------- 502 (985)
Q Consensus 436 ~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~--~--~~~v~~~L~~~GI~~~~~-------- 502 (985)
.....++++++.++..++++++.+.|++.| +++... ...+.+.+... + ..++.+.|.++||.++..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~ 351 (417)
T 3n0l_A 273 KFNLSDEWKVYAKQVRTNAQVLANVLMDRK-FKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRS 351 (417)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSC
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhCC-ceeccCCCCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcc
Confidence 344456788999999999999999999987 887642 22233444443 2 788889999999987532
Q ss_pred --cCCeEEEEeccC----CCHHHHHHHHHHHhC
Q 001989 503 --DSNTVTASFDET----TTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 --~~~~lris~t~~----~t~edId~li~aL~~ 529 (985)
..+.+|+++... .|++||++++++|.+
T Consensus 352 ~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~ 384 (417)
T 3n0l_A 352 PFITSGLRLGTPALTARGFKEKEMEIVSNYIAD 384 (417)
T ss_dssp TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHH
Confidence 135699997654 568999999999874
No 345
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.64 E-value=1.1e-14 Score=166.80 Aligned_cols=276 Identities=13% Similarity=0.117 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhh----c---CCCCEEEEcCCCChhHHHHHHHhhcCC-----
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ----K---GKKKTFIIASNCHPQTIDICITRADGF----- 279 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~----~---~~g~~Vlv~~~~H~s~~~~~~~~a~~~----- 279 (985)
...++++.+++++|.+ .+.+++|||.++++++.+.... + .++++|+++...|+.....+.......
T Consensus 79 ~~~~l~~~la~~~g~~--~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (392)
T 3ruy_A 79 QLGPWYEKVAKLTNKE--MVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRG 156 (392)
T ss_dssp THHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTT
T ss_pred HHHHHHHHHHHhcCCC--EEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccc
Confidence 3456778999999944 5888999998888776543211 0 146799998888865554443321110
Q ss_pred ----CeEEEEe---Cchhhhc-cCCCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecCc-cccCCCC--
Q 001989 280 ----DIKVVVS---DLKDIDY-KSGDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLL-ALTILKP-- 343 (985)
Q Consensus 280 ----gi~v~~v---~~~~l~~-l~~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~-~lg~l~~-- 343 (985)
...+..+ |+++|++ +++++++|++++| |++|.+.| +++|.++|+++|+++++|. .+ .++....
T Consensus 157 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De-~~~~~~~~g~~~ 235 (392)
T 3ruy_A 157 FGPMLPGIIVIPYGDLEALKAAITPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADE-IQTGLGRTGKVF 235 (392)
T ss_dssp CCSCCSSEEEECTTCHHHHHHHCCTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEEC-TTTTTTTTSSSS
T ss_pred cCCCCCCCeeeCcccHHHHHHHhccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEee-chhCCCccccch
Confidence 1123333 4567777 8889999999887 78999998 9999999999999999953 33 2332111
Q ss_pred -CC--cccceEEEecCccccccCCCCC-CcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 344 -PG--ELGADIVVGSAQRFGVPMGYGG-PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 344 -~~--~~GaDi~v~s~k~lg~P~~~GG-P~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
.. ..+.|+++.| |.++ || ..+|++++++++.+.+.....+ .|.+
T Consensus 236 ~~~~~~~~~d~~~~S-K~l~-----gG~~~~G~~~~~~~~~~~~~~~~~~--------------------------~~~~ 283 (392)
T 3ruy_A 236 ACDWDNVTPDMYILG-KALG-----GGVFPISCAAANRDILGVFEPGSHG--------------------------STFG 283 (392)
T ss_dssp GGGGGTCCCSEEEEC-GGGG-----TTTSCCEEEEECHHHHTTCCTTSSC--------------------------CSST
T ss_pred hhhccCCCCCEEEEc-hhhh-----CChhhhEEEEECHHHHhhhccCCcC--------------------------CCCC
Confidence 11 2346887664 7664 23 3478999999887766321100 0110
Q ss_pred ccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC--CeEEcCCCCcceEEEecCC-HHHHHHHHHHcC
Q 001989 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG--TVEVQGLPFFDTVKVKCAD-AHAIASAAYKIE 496 (985)
Q Consensus 420 i~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g--~~~~~~~~~~~~~~~~~~~-~~~v~~~L~~~G 496 (985)
.+.....+..+++ ..+.. +++.++..++.+++++.|++++ .+.... +...-+.+.+++ +.++.+.|.++|
T Consensus 284 -~~~~~~~a~~~~l--~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~g~~~~~~~~~~~~~l~~~l~~~g 356 (392)
T 3ruy_A 284 -GNPLACAVSIAAL--EVLEE---EKLTERSLQLGEKLVGQLKEIDNPMITEVR-GKGLFIGIELNEPARPYCEQLKAAG 356 (392)
T ss_dssp -TCHHHHHHHHHHH--HHHHH---TTHHHHHHHHHHHHHHHHTTCCCTTEEEEE-EETTEEEEEESSCSHHHHHHHHTTT
T ss_pred -CCHHHHHHHHHHH--HHHHh---hhHHHHHHHHHHHHHHHHHHhcCCCceEEE-eeeeEEEEEEcchHHHHHHHHHHCC
Confidence 0111222222222 33221 5677888899999999999874 122221 111224444443 788999999999
Q ss_pred ceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 497 MNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 497 I~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
|.+....++.+|++++..+|++|+++++++|.+
T Consensus 357 i~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 389 (392)
T 3ruy_A 357 LLCKETHENVIRIAPPLVISEEDLEWAFQKIKA 389 (392)
T ss_dssp EECCCBTTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 998876678999999999999999999999863
No 346
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.63 E-value=3.2e-14 Score=163.66 Aligned_cols=270 Identities=10% Similarity=0.040 Sum_probs=177.8
Q ss_pred HHHHHHHhcC------CCC-cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 216 FQTMIADLTG------LPM-SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 216 ~q~~ia~L~g------~~~-~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
+++.+|++++ .++ .++.+++|++.+++.++.++ . ++||+|+++...|+.+...++. .|.+++.++.
T Consensus 66 l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~-~--~~gd~vl~~~p~~~~~~~~~~~----~g~~~~~~~~ 138 (410)
T 3e2y_A 66 LVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGL-V--DPGDEVIIMVPFYDCYEPMVRM----AGAVPVFIPL 138 (410)
T ss_dssp HHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHH-C--CTTCEEEEEESCCTTHHHHHHH----TTCEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHh-c--CCCCEEEEeCCCchhhHHHHHH----cCCEEEEEec
Confidence 4455555554 445 67889999998887776654 2 3889999999999998887653 4666665532
Q ss_pred -------------------hhhhc-cCCCEeEEEEEcC-CCCeee---ccHHHHHHHHHhCCcEEEEEecCccccCCC--
Q 001989 289 -------------------KDIDY-KSGDVCGVLVQYP-GTEGEV---LDYGDFIKNAHANGVKVVMATDLLALTILK-- 342 (985)
Q Consensus 289 -------------------~~l~~-l~~~t~~V~v~~p-n~~G~v---~di~~I~~~a~~~galliV~a~~~~lg~l~-- 342 (985)
+++++ +++++++|++++| |.+|.+ +++++|+++|+++|+++++|. ..+.....
T Consensus 139 ~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De-~~~~~~~~~~ 217 (410)
T 3e2y_A 139 RSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDE-VYEWLVYTGH 217 (410)
T ss_dssp EECCCCSSCCBGGGEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC-TTTTCBCTTC
T ss_pred cccccccccccccCCcCCHHHHHhhcCCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEh-hhhhcccCCC
Confidence 45666 7788999999998 689998 689999999999999999953 33321110
Q ss_pred -------CCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccccccccccc
Q 001989 343 -------PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRD 414 (985)
Q Consensus 343 -------~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre 414 (985)
.+..++.++++.|. |.|+.| |..+|++++++++++.+.. . +.
T Consensus 218 ~~~~~~~~~~~~~~~i~~~S~sK~~g~~----G~r~G~~~~~~~~~~~~~~-------------------------~-~~ 267 (410)
T 3e2y_A 218 THVKIATLPGMWERTITIGSAGKTFSVT----GWKLGWSIGPAHLIKHLQT-------------------------V-QQ 267 (410)
T ss_dssp CCCCGGGSTTCGGGEEEEEEHHHHSSCG----GGCCEEEECCHHHHHHHHH-------------------------H-HH
T ss_pred CCCCHHHcCCccCeEEEEecchhhcCCC----CceEEEEEECHHHHHHHHH-------------------------H-HH
Confidence 11234567888887 888532 3457999998887765410 0 00
Q ss_pred ccCCCccchhHHHHHHHHHHHHH------hCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC----
Q 001989 415 KATSNICTAQALLANMAAMYAVY------HGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---- 484 (985)
Q Consensus 415 ~atsni~t~~~l~a~~aa~~l~~------~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~---- 484 (985)
..+.+. +.....+..++ +.. ...+.++++.++..++.+++.+.|+++| +++..+....-+.++...
T Consensus 268 ~~~~~~-~~~~~~a~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~ 343 (410)
T 3e2y_A 268 NSFYTC-ATPLQAALAEA--FWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVG-LKPIVPDGGYFIIADVSSLGAD 343 (410)
T ss_dssp TTTCCC-CHHHHHHHHHH--HHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTT-CEEEBCSBSSEEEEECGGGCCC
T ss_pred hhccCC-ChHHHHHHHHH--HHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCC-CeecCCCccEEEEEEchhhhcc
Confidence 011111 11222222222 221 2355688899999999999999999997 876532111112222211
Q ss_pred ----------HHHHHHHH-HHcCceeeee-----------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 485 ----------AHAIASAA-YKIEMNLRVV-----------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 ----------~~~v~~~L-~~~GI~~~~~-----------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..++.++| .++||.+..- ..+.+|+|++. |+++|+++++.|.+
T Consensus 344 ~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~--~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 344 LSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIK--KDSTLDAAEEIFRA 408 (410)
T ss_dssp CTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCC--CHHHHHHHHHHHHT
T ss_pred cccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcC--CHHHHHHHHHHHHh
Confidence 23677765 4679987431 13789999875 99999999999874
No 347
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.63 E-value=1.5e-14 Score=166.90 Aligned_cols=273 Identities=12% Similarity=0.093 Sum_probs=169.1
Q ss_pred HHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHH-HHHHHhhcCCCeEEEEeCc------
Q 001989 216 FQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTI-DICITRADGFDIKVVVSDL------ 288 (985)
Q Consensus 216 ~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~-~~~~~~a~~~gi~v~~v~~------ 288 (985)
.++.+++++|.+..++ ++.+||.++++++.++ . ++||+|+++...|++.. ........+.+++++.++.
T Consensus 83 a~~~~~~~~~~~~~~v-~~~~Gs~a~~~al~~~-~--~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 158 (425)
T 3ecd_A 83 AIERVKRLFNAGHANV-QPHSGAQANGAVMLAL-A--KPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTML 158 (425)
T ss_dssp HHHHHHHHHTCSEEEC-CCSSHHHHHHHHHHHH-C--CTTCEEEEECC------------------CEEEEECCCTTTSS
T ss_pred HHHHHHHHhCCCCcee-ecCchHHHHHHHHHHc-c--CCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCc
Confidence 3478899999887433 5778887777766554 2 38999999999998833 2222111233445555432
Q ss_pred ---hhhhc-cC-CCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCC---CCCcc-cceEEEecC-cc
Q 001989 289 ---KDIDY-KS-GDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK---PPGEL-GADIVVGSA-QR 358 (985)
Q Consensus 289 ---~~l~~-l~-~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~---~~~~~-GaDi~v~s~-k~ 358 (985)
++|++ +. +++++|++.+|++ |...|+++|.++|+++|+++++| +.++.|... .+..+ .+||+++|. |+
T Consensus 159 ~d~~~l~~~i~~~~~~~v~~~~~~~-~~~~~l~~i~~l~~~~~~~li~D-e~~~~g~~~~~~~~~~~~~~di~~~s~sK~ 236 (425)
T 3ecd_A 159 IDYDQVEALAQQHKPSLIIAGFSAY-PRKLDFARFRAIADSVGAKLMVD-MAHIAGVIAAGRHANPVEHAHVVTSTTHKT 236 (425)
T ss_dssp CCHHHHHHHHHHHCCSEEEEECSCC-CSCCCHHHHHHHHHHHTCEEEEE-CGGGHHHHHTTSSCCGGGTCSEEEEESSGG
T ss_pred cCHHHHHHHHhhcCCcEEEEccccC-CCcCCHHHHHHHHHHcCCEEEEE-CcChHhhhhcccccCchhcCcEEEecCCcc
Confidence 45555 54 5789999987765 88899999999999999999995 333333221 11111 379999998 77
Q ss_pred ccccCCCCCCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHH
Q 001989 359 FGVPMGYGGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVY 437 (985)
Q Consensus 359 lg~P~~~GGP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~ 437 (985)
|+ ||.+|++++++ .+.+.+...... + ..++++ +....+..+++ ..
T Consensus 237 l~------g~~~g~~~~~~~~~~~~~~~~~~~------~-----------------~~~~~~---~~~~~a~~~a~--~~ 282 (425)
T 3ecd_A 237 LR------GPRGGFVLTNDEEIAKKINSAVFP------G-----------------LQGGPL---MHVIAGKAVAF--GE 282 (425)
T ss_dssp GC------CCSCEEEEESCHHHHHHHHHHHC----------------------------CCC---HHHHHHHHHHH--HH
T ss_pred cC------CCCcEEEEeCCHHHHHHHHhhhCc------c-----------------ccCCcc---HHHHHHHHHHH--HH
Confidence 64 34458888874 454443110000 0 001111 12233333332 33
Q ss_pred hCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-CCcceEEEecC--C--HHHHHHHHHHcCceeeee----------
Q 001989 438 HGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCA--D--AHAIASAAYKIEMNLRVV---------- 502 (985)
Q Consensus 438 ~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~--~--~~~v~~~L~~~GI~~~~~---------- 502 (985)
...++++++.++..++.+++++.|.+.| +++..+ .....+.+..+ + ...+.+.|.++||.+...
T Consensus 283 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~ 361 (425)
T 3ecd_A 283 ALTDDFKTYIDRVLANAQALGDVLKAGG-VDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPT 361 (425)
T ss_dssp HTSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTT
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhCC-CeeccCCCCceEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCC
Confidence 4456888999999999999999999987 888742 22334444443 2 778889999999987621
Q ss_pred cCCeEEEEecc----CCCHHHHHHHHHHHhC
Q 001989 503 DSNTVTASFDE----TTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ~~~~lris~t~----~~t~edId~li~aL~~ 529 (985)
.++.+|+++.. ..+++||++++++|.+
T Consensus 362 ~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~ 392 (425)
T 3ecd_A 362 ITSGIRLGTPAGTTRGFGAAEFREVGRLILE 392 (425)
T ss_dssp TCSEEEEESHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CccceeccchhheeccCCHHHHHHHHHHHHH
Confidence 12579999554 4459999999999974
No 348
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.63 E-value=5.5e-15 Score=173.29 Aligned_cols=161 Identities=19% Similarity=0.203 Sum_probs=124.9
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---h
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---K 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---~ 289 (985)
..++++.+++++|.+ ++.++.+|+.++.+++ ... ++||+||+++..|+++...+..+++..|++++.++. +
T Consensus 135 ~~~l~~~la~~~g~~--~~i~~~sGt~al~~~l---~~~-~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~ 208 (464)
T 1ibj_A 135 RDALESLLAKLDKAD--RAFCFTSGMAALSAVT---HLI-KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLD 208 (464)
T ss_dssp HHHHHHHHHHHHTCS--EEEEESSHHHHHHHHH---TTS-CTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHH
T ss_pred HHHHHHHHHHHhCCC--eEEEECCHHHHHHHHH---HHh-CCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCCCHH
Confidence 456778999999986 4667788886655433 221 389999999999999998887667778999999876 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001989 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++.+| |.+|.+.|+++|+++||++|+++++| +.++.|....+.++|+||++.|. |+|++|.+
T Consensus 209 ~l~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livD-ea~~~g~~~~~~~~~~div~~S~sK~~~g~~G-- 285 (464)
T 1ibj_A 209 EVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVD-NSIMSPVLSRPLELGADIVMHSATKFIAGHSD-- 285 (464)
T ss_dssp HHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEE-CTTTCTTTCCGGGTTCSEEEEETTTTTTCSSC--
T ss_pred HHHHHhccCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEE-CCCcccccCChhhcCCEEEEECCcccccCCCC--
Confidence 5666 7889999999998 77999999999999999999999994 45555555456678999999998 77765422
Q ss_pred CCcEEEEEEch-hhHhcC
Q 001989 367 GPHAAFLATSQ-EYKRMM 383 (985)
Q Consensus 367 GP~~G~l~~~~-~~~~~l 383 (985)
--+|++++++ ++.+.+
T Consensus 286 -l~~G~l~~~~~~l~~~l 302 (464)
T 1ibj_A 286 -VMAGVLAVKGEKLAKEV 302 (464)
T ss_dssp -CCCEEEEECSHHHHHHH
T ss_pred -CcEEEEEEChHHHHHHH
Confidence 1238898885 665554
No 349
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.63 E-value=2.7e-15 Score=172.95 Aligned_cols=291 Identities=10% Similarity=0.053 Sum_probs=179.0
Q ss_pred HHHHHHHHHHh-CC-----Ccc-cee--cCcHHHHHHHHHHHHHHHHHhcCCCCC-----CEEEEcCCCCcccHHHHHHC
Q 001989 635 NNLGEWLCTIT-GF-----DSF-SLQ--PNAGAAGEYAGLMVIRAYHKARGDHHR-----NVCIIPVSAHGTNPATAAMC 700 (985)
Q Consensus 635 ~e~~~~la~l~-G~-----~~~-~~~--~~sGa~a~~a~l~air~~~~~~g~~~~-----~~IIv~~~~Hg~~~~~a~~~ 700 (985)
.++++.+++++ +. +.. .++ .++|++|++.++..++.+ .++ ++|+++.+.|..+...++..
T Consensus 77 ~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~------~~g~~~~~d~Vl~~~p~y~~~~~~~~~~ 150 (412)
T 1ajs_A 77 AEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARW------YNGTNNKDTPVYVSSPTWENHNGVFTTA 150 (412)
T ss_dssp HHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH------SSSSSCCCSCEEEEESCCTHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHh------CcCcCCCCCeEEEcCCCcHHHHHHHHHc
Confidence 35667777776 43 222 344 566677775554322221 255 78999888777777778889
Q ss_pred CcE-EEEEcCC--CCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEcccc-ccc
Q 001989 701 GMK-IVSVGTD--AKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANM-NAQ 773 (985)
Q Consensus 701 G~~-vv~v~~d--~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~-~~~ 773 (985)
|++ ++.+|.+ +++.+|+++|+++++++++++++|++++|+ ++|.+. .++++|+++|+++|+++++|+++. .+.
T Consensus 151 g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~ 230 (412)
T 1ajs_A 151 GFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFAS 230 (412)
T ss_dssp TCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTT
T ss_pred CCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccC
Confidence 999 9999984 457799999999998544578888889984 689884 257899999999999999999863 111
Q ss_pred cC----CCCCCcc--CCc--EEEeCCcccccccCCCCCCceEEEEE---ccc----ccCcCCCCccccCCCCCCCCCCCC
Q 001989 774 VG----LTSPGYI--GAD--VCHLNLHKTFCIPHGGGGPGMGPIGV---KKH----LAPFLPSHPVVSTGGIPAPEKSQP 838 (985)
Q Consensus 774 ~~----l~~pg~~--g~D--i~~~s~hK~l~~p~g~GGPg~G~i~~---~~~----l~~~lp~~~~g~~~~~~~~~~~~~ 838 (985)
.+ ......+ ..| +++.|++|+|+.+ |.++|++++ +++ +...+... .. ..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~riG~~~~~~~~~~~~~~~~~~~~~~-~~-----------~~ 294 (412)
T 1ajs_A 231 GNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLY----NERVGNLTVVAKEPDSILRVLSQMQKI-VR-----------VT 294 (412)
T ss_dssp SCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCG----GGCEEEEEEECSSHHHHHHHHHHHHHH-HH-----------TT
T ss_pred CcccccchHHHHHhccCCcEEEEEecccccCCC----CcceEEEEEecCCHHHHHHHHHHHHHH-Hh-----------cc
Confidence 11 0000001 123 7788999988532 456899998 655 32222110 00 00
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHhc-----HHHHHHHHHHHHHHHHHHHHHhhc-cC--CeeecCCCCceeeEEEEEec
Q 001989 839 LGTIAAAPWGSALILPISYTYIAMMG-----SKGLTEASKIAILNANYMAKRLEK-HY--PILFRGVNGTVAHEFIVDLR 910 (985)
Q Consensus 839 ~~~i~s~~~g~~~~~~~a~a~l~~lg-----~eGl~~~~~~~~~~a~~l~~~L~~-g~--~l~~~~~~~~~~~~~iv~~~ 910 (985)
+...+ . ....++.++|.... .+.+.+..++..++++++.+.|++ +. .+.+..+.+..+ +.+
T Consensus 295 ~~~~~--~----~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~--~~~--- 363 (412)
T 1ajs_A 295 WSNPP--A----QGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMF--SFT--- 363 (412)
T ss_dssp TSSCC--S----HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSE--EEC---
T ss_pred cCCCC--h----HHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceE--EEe---
Confidence 11111 1 11222223333221 235566677788889999999986 31 121111112222 111
Q ss_pred CccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 911 GLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 911 ~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+.+...+.+.|.++||.+.. .+||+++. .+++|+++ +++.|+++++++
T Consensus 364 ------~~~~~~~~~~l~~~gv~v~~-------~~Ris~~~-~~~~~i~~--~~~~l~~~l~~~ 411 (412)
T 1ajs_A 364 ------GLNPKQVEYLINQKHIYLLP-------SGRINMCG-LTTKNLDY--VATSIHEAVTKI 411 (412)
T ss_dssp ------CCCHHHHHHHHHTTCEECCT-------TSEEEGGG-CCTTTHHH--HHHHHHHHHHHC
T ss_pred ------CCCHHHHHHHHHhCCEEecC-------CcEEEeee-CCHHHHHH--HHHHHHHHHHhc
Confidence 23445555666788998742 36999884 58999999 888898888764
No 350
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.63 E-value=1.9e-14 Score=165.77 Aligned_cols=269 Identities=12% Similarity=0.061 Sum_probs=180.7
Q ss_pred HHHHHHHHhc----CCC--C-cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC
Q 001989 215 NFQTMIADLT----GLP--M-SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD 287 (985)
Q Consensus 215 e~q~~ia~L~----g~~--~-~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~ 287 (985)
++++.+|+++ |.+ + .++.+++|+|.++++++.++. ++||+|+++...|+.+...++. .|.+++.++
T Consensus 89 ~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~---~~gd~Vl~~~p~y~~~~~~~~~----~g~~~~~v~ 161 (404)
T 2o1b_A 89 AFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVI---NPGDYVLLPDPGYTDYLAGVLL----ADGKPVPLN 161 (404)
T ss_dssp HHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHC---CTTCEEEEEESCCSSHHHHHHH----TTCEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhc---CCCCEEEEcCCCchhHHHHHHH----CCCEEEEec
Confidence 4556666666 875 2 578899999988887776652 3789999999999998887753 477777765
Q ss_pred c---------hhhhc-cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCC----CCCC----
Q 001989 288 L---------KDIDY-KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTIL----KPPG---- 345 (985)
Q Consensus 288 ~---------~~l~~-l~~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l----~~~~---- 345 (985)
. ++|++ +++++++|++++| |.+|.+. ++++|+++|+++|+++++| +..+.... .+..
T Consensus 162 ~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D-e~~~~~~~~g~~~~~~~~~~ 240 (404)
T 2o1b_A 162 LEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHD-FAYGAFGFDAKNPSILASEN 240 (404)
T ss_dssp CCTTTCCCCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEE-CTTTTCBSSSCCCCGGGSTT
T ss_pred cCcccCcCCHHHHHHhhccCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEE-ccchhcccCCCCCChhhcCC
Confidence 3 33444 5567899999888 6799987 4789999999999999995 33332211 1111
Q ss_pred cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchh
Q 001989 346 ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQ 424 (985)
Q Consensus 346 ~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~ 424 (985)
..+.|++++|. |.|+.| |..+|++++++++++.+.... . ....+.|. .
T Consensus 241 ~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~l~~~~----------~--------------~~~~~~~~---~ 289 (404)
T 2o1b_A 241 GKDVAIEIYSLSKGYNMS----GFRVGFAVGNKDMIQALKKYQ----------T--------------HTNAGMFG---A 289 (404)
T ss_dssp HHHHEEEEEESTTTTTCG----GGCCEEEEECHHHHHHHHHHH----------H--------------HHCCCCCH---H
T ss_pred CCCCEEEEEecchhccCc----hhheEeEecCHHHHHHHHHHH----------h--------------hccCCCCH---H
Confidence 23678999997 877532 234689999888776551100 0 00011111 1
Q ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcce-EEEecCC---HHHHHHHHH-HcCcee
Q 001989 425 ALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDT-VKVKCAD---AHAIASAAY-KIEMNL 499 (985)
Q Consensus 425 ~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~-~~~~~~~---~~~v~~~L~-~~GI~~ 499 (985)
...+..++ +.. +.+.++++.++..++.+++.+.|+++| +++.... .+- +.+..+. ..++.++|. ++||.+
T Consensus 290 ~~~a~~~~--l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~-~g~~~~~~~~~~~~~~~l~~~l~~~~gi~v 364 (404)
T 2o1b_A 290 LQDAAIYA--LNH-YDDFLEEQSNVFKTRRDRFEAMLAKAD-LPFVHAK-GGIYVWLETPPGYDSEQFEQFLVQEKSILV 364 (404)
T ss_dssp HHHHHHHH--HHH-CHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEECCC-BSSEEEEECCTTCCHHHHHHHHHHHHCEEC
T ss_pred HHHHHHHH--Hhc-CHHHHHHHHHHHHHHHHHHHHHHHhcC-CeecCCC-cceEEEEeCCCCCCHHHHHHHHHHHCCEEE
Confidence 12222222 232 356688888899999999999999886 7765321 111 3345542 678888887 579987
Q ss_pred eee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 500 RVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 500 ~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
... .++.+|++++. ++++|+++++.|.+
T Consensus 365 ~~g~~f~~~~~~~iRis~~~--~~e~l~~~l~~l~~ 398 (404)
T 2o1b_A 365 APGKPFGENGNRYVRISLAL--DDQKLDEAAIRLTE 398 (404)
T ss_dssp EESGGGCGGGTTEEEEECCS--CTTHHHHHHHHHHG
T ss_pred eCchhhCcCCCCeEEEEEcC--CHHHHHHHHHHHHH
Confidence 542 14789999986 78899999999874
No 351
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.63 E-value=2e-14 Score=166.14 Aligned_cols=292 Identities=14% Similarity=0.086 Sum_probs=187.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC
Q 001989 208 GRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD 287 (985)
Q Consensus 208 g~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~ 287 (985)
|..+...++++.+++++|.+ ...++.+||.+++.++.+++. ++||+|+++...|+++...++. .|++++.++
T Consensus 39 g~~~l~~~l~~~la~~~g~~--~~i~~~~gt~al~~~~~~~~~--~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~~~ 110 (418)
T 2c81_A 39 GEESMERKFAKAFADFNGVP--YCVPTTSGSTALMLALEALGI--GEGDEVIVPSLTWIATATAVLN----VNALPVFVD 110 (418)
T ss_dssp SSCCHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTC--CTTCEEEEESSSCTHHHHHHHH----TTCEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCC--CCcCEEEECCCccHhHHHHHHH----cCCEEEEEe
Confidence 33445667889999999987 366778888777776666533 3789999999999999988753 588888776
Q ss_pred c---------hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccC-CC--CCCcccceEEEe
Q 001989 288 L---------KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTI-LK--PPGELGADIVVG 354 (985)
Q Consensus 288 ~---------~~l~~-l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~-l~--~~~~~GaDi~v~ 354 (985)
. ++|++ +++++++|++++ ++|.+.|+++|.++|+++|+++++| +..+.+. .. ..+.++ |+++.
T Consensus 111 ~~~~~~~~d~~~l~~~i~~~~~~v~~~~--~~G~~~~~~~i~~~~~~~~~~li~D-~a~~~~~~~~~~~~~~~~-~~~~~ 186 (418)
T 2c81_A 111 VEADTYCIDPQLIKSAITDKTKAIIPVH--LFGSMANMDEINEIAQEHNLFVIED-CAQSHGSVWNNQRAGTIG-DIGAF 186 (418)
T ss_dssp BCTTTCSBCHHHHGGGCCTTEEEECCBC--CTTCCCCHHHHHHHHHHTTCEEEEE-CTTCTTCEETTEETTSSS-SEEEE
T ss_pred cCCCCCCcCHHHHHHhhCCCCeEEEEeC--CcCCcccHHHHHHHHHHCCCEEEEE-CcccccCccCCEeccccc-ceEEE
Confidence 4 34555 778899998765 5799999999999999999999995 3444443 21 123333 55555
Q ss_pred c--C-ccccccCCCCCCcEEEEEEc-hhhHhcCCCce-eeeeecCCCCcceeeeccccccccccc--ccCCCccc-hhHH
Q 001989 355 S--A-QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRI-VGVSIDSSGKPALRVAMQTREQHIRRD--KATSNICT-AQAL 426 (985)
Q Consensus 355 s--~-k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~-vG~t~d~~g~~~~~l~l~tre~~irre--~atsni~t-~~~l 426 (985)
+ + |.|+. | .+|++.++ +++.+++.... .|.... +.+ .....+.+ .+|.++.. +..+
T Consensus 187 s~s~~K~~~~-----g-~~g~~~~~~~~l~~~~~~~~~~~~~~~--~~~--------~~~~~~~~~~~~~~~~~g~~~~~ 250 (418)
T 2c81_A 187 SCQQGKVLTA-----G-EGGIIVTKNPRLFELIQQLRADSRVYC--DDS--------SELMHGDMQLVKKGDIQGSNYCL 250 (418)
T ss_dssp ECCTTSSSCS-----S-SCEEEEESCHHHHHHHHHHHBTTEEEC--SCG--------GGCCTTCBSEEECCSSCCCBCCC
T ss_pred eccCCcccCC-----C-CeEEEEECCHHHHHHHHHHHHhCcccc--ccc--------cccccchhhccccccccCcCCCc
Confidence 4 3 66642 2 35788884 66655442111 111000 000 00000001 11112211 0011
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCC------CcceEEEecC-----C--HHHHHHHHH
Q 001989 427 LANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP------FFDTVKVKCA-----D--AHAIASAAY 493 (985)
Q Consensus 427 ~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~------~~~~~~~~~~-----~--~~~v~~~L~ 493 (985)
..+.+++... ..++++++.++..++++++.+.|+++.++++...+ .+..+.+.++ + ..++.+.|.
T Consensus 251 ~~~~aa~~~~--~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 328 (418)
T 2c81_A 251 SEFQSAILLD--QLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILR 328 (418)
T ss_dssp CHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHH
T ss_pred CHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEEccccccccCHHHHHHHHH
Confidence 1222333212 23467888899999999999999998339887322 1234445554 2 789999999
Q ss_pred Hc-Cce---eeeec----------------------------------------CCeEEEEeccCC-CHHHHHHHHHHHh
Q 001989 494 KI-EMN---LRVVD----------------------------------------SNTVTASFDETT-TLEDVDKLFIVFA 528 (985)
Q Consensus 494 ~~-GI~---~~~~~----------------------------------------~~~lris~t~~~-t~edId~li~aL~ 528 (985)
++ ||. ++... .+.+|++++..+ |+||||+++++|.
T Consensus 329 ~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~ 408 (418)
T 2c81_A 329 EKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVA 408 (418)
T ss_dssp HHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHH
T ss_pred HcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHH
Confidence 98 998 64310 147999999999 9999999999997
Q ss_pred C
Q 001989 529 G 529 (985)
Q Consensus 529 ~ 529 (985)
+
T Consensus 409 ~ 409 (418)
T 2c81_A 409 E 409 (418)
T ss_dssp H
T ss_pred H
Confidence 4
No 352
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.63 E-value=1.7e-13 Score=154.16 Aligned_cols=296 Identities=14% Similarity=0.136 Sum_probs=191.2
Q ss_pred CCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhc
Q 001989 173 MGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQK 252 (985)
Q Consensus 173 ~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~ 252 (985)
.|..+...|+.+.+++...-.-+..|.+. ++ .++++.+|+++|.++.++.+++|+|.+++.++.++.
T Consensus 22 ~~~~~~~~~~~v~~a~~~~~~~~~~y~~~-----~~-----~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l~--- 88 (350)
T 3fkd_A 22 TTVWTDGDKDHLEKHLVENLNCIRHYPEP-----DA-----GTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFR--- 88 (350)
T ss_dssp CCSCCCSCCHHHHHHHHHTGGGGGSCCCT-----TC-----HHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHTT---
T ss_pred CCCCCCCCCHHHHHHHHHhHhHHhcCCCC-----cH-----HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHHC---
Confidence 44434446666665555432222333221 11 257899999999998899999999988777666542
Q ss_pred CCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-hhhhccC-CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCC-cE
Q 001989 253 GKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-KDIDYKS-GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANG-VK 328 (985)
Q Consensus 253 ~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-~~l~~l~-~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~g-al 328 (985)
||+|+++...|+++...++. .|++++.++. ++-..++ +++++|++.+| |.+|.+.|+++|.++++.++ .+
T Consensus 89 --gd~Vi~~~p~~~~~~~~~~~----~g~~~~~v~~~~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~ 162 (350)
T 3fkd_A 89 --GSRSLIAIPSFAEYEDACRM----YEHEVCFYPSNEDIGEADFSNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTT 162 (350)
T ss_dssp --TCEEEEEESCCHHHHHHHHH----TTCEEEEEETTSCGGGSCCTTCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSE
T ss_pred --CCEEEEeCCCcHHHHHHHHH----cCCeEEEEecCCccccCccCCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCE
Confidence 79999999999998877653 5889998887 4433322 67899999998 78999999999999999886 66
Q ss_pred EEEEecCccccCCC-C-----CCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCccee
Q 001989 329 VVMATDLLALTILK-P-----PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALR 401 (985)
Q Consensus 329 liV~a~~~~lg~l~-~-----~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~ 401 (985)
+++| +..+..... . ...++.+++++|. |.++.| |..+|++++++++.+.+... .
T Consensus 163 li~D-ea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~----G~r~G~~~~~~~~~~~~~~~----------~---- 223 (350)
T 3fkd_A 163 FVLD-QSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIP----GLRIGYIVANKDFMKRVAAF----------S---- 223 (350)
T ss_dssp EEEE-CTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCG----GGCCEEEECCHHHHHHHHTT----------C----
T ss_pred EEEE-CchhhhccCcchhhHHhhcCCCEEEEecCchhccCc----chheEeEEeCHHHHHHHHHh----------C----
Confidence 7664 333321111 1 1245667999997 888643 23468999888877665110 0
Q ss_pred eecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEe
Q 001989 402 VAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVK 481 (985)
Q Consensus 402 l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~ 481 (985)
...+.| .....+..+ .+... .+-.+.+.+. .++.+++.+.|++++++++... ...-+.+.
T Consensus 224 ------------~~~~~~---~~~~~~~~~--~l~~~-~~~~~~~~~~-~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~ 283 (350)
T 3fkd_A 224 ------------TPWAVN---ALAIEAAKF--ILIHP-AQFTLPIRKW-QRNTVDFITALNRLDGVEVHPS-GTTFFLLR 283 (350)
T ss_dssp ------------CTTCSC---HHHHHHHHH--HHHCT-TTTCCCHHHH-HHHHHHHHHHHHHSTTEEECCC-SSSEEEEE
T ss_pred ------------CCCCCC---HHHHHHHHH--HHhCH-HHHHHHHHHH-HHHHHHHHHHHhcCCCcEECCC-CCcEEEEE
Confidence 000111 111111111 12221 1012233333 3888999999998833887632 12223355
Q ss_pred cC--CHHHHHHHHHH-cCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 482 CA--DAHAIASAAYK-IEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 482 ~~--~~~~v~~~L~~-~GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++ ++.++.+.|.+ +||.+... .++.+|+|++ +.+|+|+|+++|..
T Consensus 284 ~~~~~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~---~~~~~~~l~~al~~ 337 (350)
T 3fkd_A 284 LKKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ---RPAQNQLFIKALET 337 (350)
T ss_dssp ESSSCHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHH
Confidence 55 38899999998 89987642 1578999976 88999999998874
No 353
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.63 E-value=1.1e-14 Score=167.71 Aligned_cols=209 Identities=16% Similarity=0.101 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHH-----HHHCCcEEEEEc
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT-----AAMCGMKIVSVG 708 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~-----a~~~G~~vv~v~ 708 (985)
..++++.+++++|.+. .+.++||++|+.+ +++ . ..++++||+++..|+..... ....|++++.++
T Consensus 69 ~~~l~~~la~l~g~~~-~~~~~sG~~Ai~~-~~~---l-----~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~ 138 (400)
T 3nmy_A 69 RFAYERCVAALEGGTR-AFAFASGMAATST-VME---L-----LDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVD 138 (400)
T ss_dssp HHHHHHHHHHHHTCSE-EEEESSHHHHHHH-HHT---T-----SCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEEC
T ss_pred HHHHHHHHHHHhCCCC-EEEecCHHHHHHH-HHH---H-----cCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEEC
Confidence 5578899999999874 4667788877654 221 1 14678999988877633332 233699999999
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCccCCcEE
Q 001989 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 709 ~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la~~~galliVD~a~~~~~~~l~~pg~~g~Di~ 787 (985)
.+ |+++|+++++ +++++|++++| |++|.+. |+++|+++|+++|+++++|+++..+ .+..|..+|+|++
T Consensus 139 ~~-----d~~~l~~~i~---~~~~~v~~e~~~np~G~~~-~l~~i~~la~~~g~~livDe~~~~~--~~~~~~~~g~div 207 (400)
T 3nmy_A 139 LT-----DPAAFKAAIR---ADTKMVWIETPTNPMLKLV-DIAAIAVIARKHGLLTVVDNTFASP--MLQRPLSLGADLV 207 (400)
T ss_dssp TT-----SHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHTTCEEEEECTTTHH--HHCCGGGGTCSEE
T ss_pred CC-----CHHHHHHHhc---cCCCEEEEECCCCCCCeee-cHHHHHHHHHHcCCEEEEECCCccc--ccCChhhcCCcEE
Confidence 75 8999999997 79999999998 4799998 8999999999999999999998522 2345677899999
Q ss_pred EeCCcccccccCCCCCCceE-EEEE-cccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcH
Q 001989 788 HLNLHKTFCIPHGGGGPGMG-PIGV-KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 788 ~~s~hK~l~~p~g~GGPg~G-~i~~-~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~ 865 (985)
+.|++|+|+.| |.+-+| ++++ ++++.+.+.... ...+... .+ ..+|..++. .
T Consensus 208 ~~S~sK~l~g~---g~~~gG~~vv~~~~~~~~~l~~~~-------------~~~g~~~-----~~---~~a~~~l~~--l 261 (400)
T 3nmy_A 208 VHSATKYLNGH---SDMVGGIAVVGDNAELAEQMAFLQ-------------NSIGGVQ-----GP---FDSFLALRG--L 261 (400)
T ss_dssp EEETTTTTTCS---SSCCCEEEEECSCHHHHHHHHHHH-------------HHHCCBC-----CH---HHHHHHHHH--H
T ss_pred EecCccccCCC---CCcceeEEEEeCCHHHHHHHHHHH-------------HhcCCCC-----CH---HHHHHHHHh--H
Confidence 99999998532 112345 3444 344443332100 0011111 11 123333333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 001989 866 KGLTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 866 eGl~~~~~~~~~~a~~l~~~L~~g 889 (985)
+.+..+.++..+++.++.+.|++.
T Consensus 262 ~~l~~r~~~~~~~a~~l~~~L~~~ 285 (400)
T 3nmy_A 262 KTLPLRMRAHCENALALAQWLETH 285 (400)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445666778889999999999864
No 354
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.63 E-value=1.1e-13 Score=158.42 Aligned_cols=322 Identities=16% Similarity=0.167 Sum_probs=200.4
Q ss_pred HHHHHHHHHHhcCCCccceecCCCCCCCCCcHHHHHHHHhCC-ccccccCCChhhHhhhHHHHHHHHHHHHHHhc----C
Q 001989 151 SQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENP-AWYTQYTPYQAEIAQGRLESLLNFQTMIADLT----G 225 (985)
Q Consensus 151 ~e~~~~~~~l~~~n~~~~~~lG~g~y~~~~p~~v~~~i~~~~-~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~----g 225 (985)
.++.+..+++...+..+.+| +.|..+...|+.+.+++...- .....|.+. +| ..++++.+|+++ |
T Consensus 17 ~~~~~~~~~~~~~g~~~i~l-~~g~~~~~~~~~v~~a~~~~~~~~~~~y~~~-----~g----~~~lr~~ia~~~~~~~g 86 (391)
T 3h14_A 17 MDVMEAARRAEEAGRRIIHM-EVGQPGTGAPRGAVEALAKSLETDALGYTVA-----LG----LPALRQRIARLYGEWYG 86 (391)
T ss_dssp HHHHHHHHHHHHTTCCCEEC-CCSSCSSCSCHHHHHHHHHHHC---------------C----CHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCCeEEc-cCCCCCCCCCHHHHHHHHHHHhcCCCCCCCC-----CC----hHHHHHHHHHHHHHHhC
Confidence 44556666666666554443 344444445776654544310 011233321 12 234555666665 4
Q ss_pred --CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch-------hhhccCC
Q 001989 226 --LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK-------DIDYKSG 296 (985)
Q Consensus 226 --~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~-------~l~~l~~ 296 (985)
.++.++.+++|+|.+++.++.++. ++||+|+++...|+++...++. .|++++.++.+ +++.+..
T Consensus 87 ~~~~~~~v~~t~g~~~al~~~~~~l~---~~gd~vl~~~p~~~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~~~l~~ 159 (391)
T 3h14_A 87 VDLDPGRVVITPGSSGGFLLAFTALF---DSGDRVGIGAPGYPSYRQILRA----LGLVPVDLPTAPENRLQPVPADFAG 159 (391)
T ss_dssp CCCCGGGEEEESSHHHHHHHHHHHHC---CTTCEEEEEESCCHHHHHHHHH----TTCEEEEEECCGGGTTSCCHHHHTT
T ss_pred CCCCHHHEEEecChHHHHHHHHHHhc---CCCCEEEEcCCCCccHHHHHHH----cCCEEEEeecCcccCCCCCHHHHHh
Confidence 567789999999988887766542 3889999999999999887753 58888887653 2333222
Q ss_pred -CEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCC----CCCCcc-cceEEEecC-ccccccCCC
Q 001989 297 -DVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL----KPPGEL-GADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 297 -~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l----~~~~~~-GaDi~v~s~-k~lg~P~~~ 365 (985)
++++|++.+| |.+|.+.| +++|+++|+++|+++++|. ..+.... ....++ +.+++++|. |.++.
T Consensus 160 ~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~---- 234 (391)
T 3h14_A 160 LDLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDE-IYHGIEYEAKAVTALELTDECYVINSFSKYFSM---- 234 (391)
T ss_dssp SCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC-TTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCC----
T ss_pred cCCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEC-cchhcccCCCCcChhhcCCCEEEEEechhccCC----
Confidence 7899999998 78999876 8999999999999999953 3332111 111222 456888887 87753
Q ss_pred CCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchh-HHHHHHHHHHHHHhCcchHH
Q 001989 366 GGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQ-ALLANMAAMYAVYHGPEGLK 444 (985)
Q Consensus 366 GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~-~l~a~~aa~~l~~~g~~Gl~ 444 (985)
+|..+|++.+++++.+.+.. .++ ..+ .+++. ...+..+ .+...+.++
T Consensus 235 ~G~r~G~~~~~~~~~~~~~~-------------------------~~~-~~~--~~~~~~~~~a~~~----~l~~~~~~~ 282 (391)
T 3h14_A 235 TGWRVGWMVVPEDQVRVVER-------------------------IAQ-NMF--ICAPHASQVAALA----ALDCDAELQ 282 (391)
T ss_dssp TTSCCEEEECCGGGHHHHHH-------------------------HHH-HTT--CCCCHHHHHHHHH----HTTCHHHHH
T ss_pred ccceeEEEEeCHHHHHHHHH-------------------------HHh-hhc--cCCCHHHHHHHHH----HhCChHHHH
Confidence 34557999988877655410 000 001 11111 1112212 222566788
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcc-eEEEecC--C--HHHHHHHHHHc-Cceeeee-------cCCeEEEEe
Q 001989 445 TIAQRVHGLAGTFALGLKKLGTVEVQGLPFFD-TVKVKCA--D--AHAIASAAYKI-EMNLRVV-------DSNTVTASF 511 (985)
Q Consensus 445 ~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~-~~~~~~~--~--~~~v~~~L~~~-GI~~~~~-------~~~~lris~ 511 (985)
++.++..++.+++.+.|+++| +.....+... -+.+.++ + +.++.+.|.++ ||.+... .++.+|+++
T Consensus 283 ~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~ 361 (391)
T 3h14_A 283 ANLDVYKANRKLMLERLPKAG-FTRIAPPDGAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSY 361 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-CCCBCCCCBTTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHcC-CCcccCCCeeEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEe
Confidence 999999999999999999886 5443222111 2333433 2 78899998775 9988542 146899999
Q ss_pred ccCCCHHHHHHHHHHHhC
Q 001989 512 DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 512 t~~~t~edId~li~aL~~ 529 (985)
+. +++||+++++.|.+
T Consensus 362 ~~--~~~~i~~~l~~l~~ 377 (391)
T 3h14_A 362 AR--ATADIEEGLDRLEA 377 (391)
T ss_dssp CS--CHHHHHHHHHHHHH
T ss_pred cC--CHHHHHHHHHHHHH
Confidence 87 78999999998874
No 355
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.63 E-value=9.8e-14 Score=160.00 Aligned_cols=270 Identities=11% Similarity=0.097 Sum_probs=182.1
Q ss_pred HHHHHHHHHhc----CC--CC-cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 214 LNFQTMIADLT----GL--PM-SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 214 ~e~q~~ia~L~----g~--~~-~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
.++++.+|+++ |. ++ .++.+++|+|.++++++.++ . ++||+|+++...|+.+...++. .|.+++.+
T Consensus 78 ~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~-~--~~gd~Vl~~~p~~~~~~~~~~~----~g~~~~~~ 150 (412)
T 2x5d_A 78 PRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLAT-L--DHGDTILVPNPSYPIHIYGAVI----AGAQVRSV 150 (412)
T ss_dssp HHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHH-C--CTTCEEEEEESCCHHHHHHHHH----HTCEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHh-C--CCCCEEEEcCCCchhHHHHHHH----cCCEEEEe
Confidence 35667777777 85 44 57999999998888777654 2 3789999999999999888754 47777766
Q ss_pred Cc----------hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCC-C----CCC-
Q 001989 287 DL----------KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL-K----PPG- 345 (985)
Q Consensus 287 ~~----------~~l~~-l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l-~----~~~- 345 (985)
+. +++++ +++++++|++.+| |.+|.+.+ +++|+++|+++|+++++| +..+.+.. . +..
T Consensus 151 ~~~~~~~~~~d~~~l~~~i~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D-e~~~~~~~~g~~~~~~~~ 229 (412)
T 2x5d_A 151 PLVPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHD-LAYADIVYDGWKAPSIMQ 229 (412)
T ss_dssp ECSTTSCHHHHHHHHHHTEESCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE-CTTTTCBCTTCCCCCGGG
T ss_pred ecCCccCCCCCHHHHHHhcccCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEe-ccccccccCCCCCCChhh
Confidence 53 23444 6678999999888 67998864 789999999999999995 33333221 1 111
Q ss_pred ---cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCcc
Q 001989 346 ---ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNIC 421 (985)
Q Consensus 346 ---~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~ 421 (985)
..+.|++++|. |.|+. +|..+|++++++++++.+.... + ....+.|.
T Consensus 230 ~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~l~~~~----------------------~--~~~~~~~~- 280 (412)
T 2x5d_A 230 VPGAKDIAVEFFTLSKSYNM----AGWRIGFMVGNPELVSALARIK----------------------S--YHDYGTFT- 280 (412)
T ss_dssp STTGGGTEEEEEECC-CCSC----TTSCCEEEEECHHHHHHHHHHH----------------------H--HHCCCCCH-
T ss_pred ccCccCcEEEEecCccccCC----cccceEEEEcCHHHHHHHHHHH----------------------h--hhccCCCH-
Confidence 25789999997 77753 2344799999988776551100 0 00011111
Q ss_pred chhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcc-eEEEecC------CHHHHHHHHHH
Q 001989 422 TAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFD-TVKVKCA------DAHAIASAAYK 494 (985)
Q Consensus 422 t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~-~~~~~~~------~~~~v~~~L~~ 494 (985)
....+..++ +. .+.+.++++.++..++.+++.+.|+++| +++..+. .. -+.+.++ +..++.+.|.+
T Consensus 281 --~~~~a~~~~--l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~ 353 (412)
T 2x5d_A 281 --PLQVAAIAA--LE-GDQQCVRDIARQYQQRRDVLVKGLREAG-WMVENPK-ASMYVWAKIPEPYAHLGSLEFAKKLLQ 353 (412)
T ss_dssp --HHHHHHHHH--HH-SCSHHHHHHHHHHHHHHHHHHHHHHHHT-CCCCCCS-BSSEEEEECCTTTGGGCHHHHHHHHHH
T ss_pred --HHHHHHHHH--Hh-CCHHHHHHHHHHHHHHHHHHHHHHHHCC-CEecCCC-eeeEEEEEcCCccCCCCHHHHHHHHHH
Confidence 111121121 22 3355688899999999999999999886 7765321 11 1334543 36788888865
Q ss_pred -cCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 495 -IEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 495 -~GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+||.+... ..+.+|++++. ++++|+++++.|..
T Consensus 354 ~~gi~v~~g~~f~~~~~~~iRis~~~--~~~~l~~~l~~l~~ 393 (412)
T 2x5d_A 354 DAKVSVSPGIGFGDYGDDHVRFALIE--NRDRLRQAVRGIKA 393 (412)
T ss_dssp HHCEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred HCCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 69987542 14789999986 89999999998874
No 356
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.62 E-value=6.9e-16 Score=176.70 Aligned_cols=288 Identities=11% Similarity=0.030 Sum_probs=175.9
Q ss_pred HHHHHHHHHh-CC--Cccc-ee--cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC
Q 001989 636 NLGEWLCTIT-GF--DSFS-LQ--PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT 709 (985)
Q Consensus 636 e~~~~la~l~-G~--~~~~-~~--~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~ 709 (985)
++++.+++++ +. +... ++ .++|++|++.++.+++.+ .++++|+++.+.|..+...++..|.+++.+|.
T Consensus 73 ~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~ 146 (394)
T 2ay1_A 73 EFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMA------NPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRY 146 (394)
T ss_dssp HHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHH------CTTCCEEEEESCCHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHHhc------CCCCEEEEcCCCChhHHHHHHHcCCceEEEec
Confidence 5666677665 44 3433 33 667777776665555432 25688999887776666667788999999998
Q ss_pred C--CCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEcccccc-ccC------CC
Q 001989 710 D--AKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNA-QVG------LT 777 (985)
Q Consensus 710 d--~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~-~~~------l~ 777 (985)
+ +++.+|+++|++++++.+++++++++++|+ ++|.+.+ ++++|.++|+++|+++++|+++... .++ +.
T Consensus 147 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~ 226 (394)
T 2ay1_A 147 FDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTR 226 (394)
T ss_dssp EETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHH
T ss_pred ccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHH
Confidence 5 457799999999998433357778888884 6898851 4778999999999999999998421 110 00
Q ss_pred CCCccCCc-EEEeCCcccccccCCCCCCceEEEEE---cccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 778 SPGYIGAD-VCHLNLHKTFCIPHGGGGPGMGPIGV---KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 778 ~pg~~g~D-i~~~s~hK~l~~p~g~GGPg~G~i~~---~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
.....+.| +++.|++|+|+. +|.++|++++ ++++.+.+....... ....+... +. ...
T Consensus 227 ~~~~~~~~~i~~~s~sK~~~~----~G~riG~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~--~~----~~~ 288 (394)
T 2ay1_A 227 LIASRIPEVLIAASCSKNFGI----YRERTGCLLALCADAATRELAQGAMAFL--------NRQTYSFP--PF----HGA 288 (394)
T ss_dssp HHHHHCSSEEEEEECTTTTTC----GGGCEEEEEEECSSHHHHHHHHHHHHHH--------HHTTTSSC--CC----HHH
T ss_pred HHhhcCCCEEEEEeccCCCcC----cCCccceEEEEeCCHHHHHHHHHHHHHH--------HhhhcCCC--Ch----HHH
Confidence 00112334 567788999854 3567899987 444322110000000 00001111 11 112
Q ss_pred HHHHHHHHHh-----cHHHHHHHHHHHHHHHHHHHHHhhc-c----CCeeecCCCCceeeEEEEEecCccccCCCCHHHH
Q 001989 854 PISYTYIAMM-----GSKGLTEASKIAILNANYMAKRLEK-H----YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDV 923 (985)
Q Consensus 854 ~~a~a~l~~l-----g~eGl~~~~~~~~~~a~~l~~~L~~-g----~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v 923 (985)
.++.++|... -.+.+++..++..++++++.+.|++ + +.+. .+.+..+ +.+. .+.+.+
T Consensus 289 ~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~~~g~~--~~~~---------~~~~~~ 355 (394)
T 2ay1_A 289 KIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFV--AEHRGMF--SRLG---------ATPEQV 355 (394)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHH--HHCCSSE--EECC---------CCHHHH
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEE--cCCceEE--EeeC---------CCHHHH
Confidence 2222333321 0235666667778888999998876 3 3332 1112222 2222 234667
Q ss_pred HHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 924 AKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 924 ~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
.+.|.++||.+.. .+||+++ .++++||++ +++.|+++
T Consensus 356 ~~~l~~~gi~v~~-------~~Ris~~-~~~~~~i~~--~~~~l~~~ 392 (394)
T 2ay1_A 356 KRIKEEFGIYMVG-------DSRINIA-GLNDNTIPI--LARAIIEV 392 (394)
T ss_dssp HHHHHHHCEECCT-------TCEEEGG-GCCTTTHHH--HHHHHHHH
T ss_pred HHHHHhCCEEecC-------CCeEEee-cCCHhhHHH--HHHHHHHc
Confidence 7778888998742 3699988 579999999 66776654
No 357
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.62 E-value=2.5e-15 Score=172.04 Aligned_cols=274 Identities=11% Similarity=0.093 Sum_probs=164.8
Q ss_pred eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC--CCCCCCCHHHHHHHHHhcCC
Q 001989 652 LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT--DAKGNINIEELRKAAEANRD 729 (985)
Q Consensus 652 ~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~--d~~g~iD~e~L~~~i~~~~~ 729 (985)
++.++|++++..++..+... .++++|+++.+.|..+...++..|++++.+|+ ++++.+|+++|+++++++++
T Consensus 99 ~~t~g~~~a~~~~~~~~~~~------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 172 (397)
T 3fsl_A 99 IQTLGGSGALKVGADFLKRY------FPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQA 172 (397)
T ss_dssp EEESHHHHHHHHHHHHHHHH------CTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCT
T ss_pred EEcCCcHHHHHHHHHHHHhc------CCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCC
Confidence 45566666664443222111 36788999988777777778889999999998 45688999999999986556
Q ss_pred CEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccccCCCC--------CCccCCcEEEeCCccccccc
Q 001989 730 NLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVGLTS--------PGYIGADVCHLNLHKTFCIP 798 (985)
Q Consensus 730 ~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~~l~~--------pg~~g~Di~~~s~hK~l~~p 798 (985)
+++++++++| |++|.+. .++++|+++|+++|+++++|+++.....+... ++..+.++++.|++|+|+.|
T Consensus 173 ~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 252 (397)
T 3fsl_A 173 GSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLY 252 (397)
T ss_dssp TCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCG
T ss_pred CCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCc
Confidence 7888998888 5799884 15779999999999999999987421110000 01223457788889998543
Q ss_pred CCCCCCceEEEEEc---ccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH-----hcHHHHHH
Q 001989 799 HGGGGPGMGPIGVK---KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM-----MGSKGLTE 870 (985)
Q Consensus 799 ~g~GGPg~G~i~~~---~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~-----lg~eGl~~ 870 (985)
|.++|++++. +++...+....... ....+.+.+. .++. ++..++.. ...+.+.+
T Consensus 253 ----G~riG~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~--~~~~----~~~~~l~~~~l~~~~~~~~~~ 314 (397)
T 3fsl_A 253 ----GERVGGLSVMCEDAEAAGRVLGQLKAT--------VRRNYSSPPN--FGAQ----VVAAVLNDEALKASWLKEVEE 314 (397)
T ss_dssp ----GGCCEEEEEECSSHHHHHHHHHHHHHH--------HHTTTSSCCS--HHHH----HHHHHHTSHHHHHHHHHHHHH
T ss_pred ----CCCeeEEEEecCCHHHHHHHHHHHHHH--------HHhccCCCCH--HHHH----HHHHHhcCHHHHHHHHHHHHH
Confidence 6678998752 22222110000000 0001111111 1111 11111211 01344566
Q ss_pred HHHHHHHHHHHHHHHhhccC---CeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEE
Q 001989 871 ASKIAILNANYMAKRLEKHY---PILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMI 947 (985)
Q Consensus 871 ~~~~~~~~a~~l~~~L~~g~---~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lri 947 (985)
..++..++++++.+.|++.. .+.+..+.+..+ +.+ +.+.+.+.+.|.++||.+... + ||
T Consensus 315 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~--~~~---------~~~~~~~~~~l~~~gi~v~~g-----~--Ri 376 (397)
T 3fsl_A 315 MRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMF--SYT---------GLSAAQVDRLREEFGVYLIAS-----G--RM 376 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSCCTHHHHCCSSE--EEC---------CCCHHHHHHHHHTTCEECCTT-----C--EE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCceeecCCceEE--Eec---------CCCHHHHHHHHHhCCEEECCC-----C--eE
Confidence 66777888999999998631 221111112222 112 235667778888899988421 2 88
Q ss_pred eccCCCCHHHHHHHHccCChhHH
Q 001989 948 EPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 948 s~t~~~t~eeId~~~~~~~l~~~ 970 (985)
++.. .+.+||++ +++.|+++
T Consensus 377 s~~~-~~~~~i~~--~~~~l~~~ 396 (397)
T 3fsl_A 377 CVAG-LNTANVQR--VAKAFAAV 396 (397)
T ss_dssp EGGG-CCTTTHHH--HHHHHHHH
T ss_pred EEEe-cCHhhHHH--HHHHHHhh
Confidence 8864 35577999 66666654
No 358
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.62 E-value=3.4e-14 Score=164.50 Aligned_cols=313 Identities=13% Similarity=0.084 Sum_probs=199.9
Q ss_pred ccceecCCCCCCCCCcHHHHHHHHhCCc-cccccCCChhhHhhhHHHHHHHHHHHHHHhcC--CCCcceeeccchHHHHH
Q 001989 166 VYKSFIGMGYYNTHVPPVILRNIMENPA-WYTQYTPYQAEIAQGRLESLLNFQTMIADLTG--LPMSNASLLDEGTAAAE 242 (985)
Q Consensus 166 ~~~~~lG~g~y~~~~p~~v~~~i~~~~~-~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g--~~~~~~sl~~~~ta~~e 242 (985)
.+.+| +.|.-+...|+.+.+++.+.-+ ....|+++.. +...++.+++++.+| .++.++.+++|++.+++
T Consensus 62 ~~i~~-~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~-------~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~ 133 (421)
T 3l8a_A 62 ELLQM-WVADMDFLPVPEIKEAIINYGREHIFGYNYFND-------DLYQAVIDWERKEHDYAVVKEDILFIDGVVPAIS 133 (421)
T ss_dssp TCEEC-CSSCCCSCCCHHHHHHHHHHHHHCCSSCBCCCH-------HHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHH
T ss_pred Ceeec-ccCCCCCCCCHHHHHHHHHHHhcCCcCCCCCCH-------HHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHH
Confidence 34343 3443344466666545443211 1234444432 333455677888888 56778989999998888
Q ss_pred HHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-----------hhhhc-cC-CCEeEEEEEcC-CC
Q 001989 243 AMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-----------KDIDY-KS-GDVCGVLVQYP-GT 308 (985)
Q Consensus 243 a~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-----------~~l~~-l~-~~t~~V~v~~p-n~ 308 (985)
+++.++. ++||+|+++...|+.+...++. .|.+++.++. ++|++ +. +++++|++.+| |.
T Consensus 134 ~a~~~~~---~~gd~Vi~~~~~y~~~~~~~~~----~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~np 206 (421)
T 3l8a_A 134 IALQAFS---EKGDAVLINSPVYYPFARTIRL----NDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNP 206 (421)
T ss_dssp HHHHHHS---CTEEEEEEEESCCHHHHHHHHH----TTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTT
T ss_pred HHHHHhc---CCCCEEEECCCCcHHHHHHHHH----CCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCC
Confidence 7776542 3789999999999998887754 4777766543 45666 65 78999999998 78
Q ss_pred Ceee---ccHHHHHHHHHhCCcEEEEEecCccccCC-----C-----CCCcccceEEEecC-ccccccCCCCCCcEEEEE
Q 001989 309 EGEV---LDYGDFIKNAHANGVKVVMATDLLALTIL-----K-----PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLA 374 (985)
Q Consensus 309 ~G~v---~di~~I~~~a~~~galliV~a~~~~lg~l-----~-----~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~ 374 (985)
+|.+ +++++|+++|+++|+++++|. .++.... . .+...+.++++.+. |.|+.| |-.+|++.
T Consensus 207 tG~~~~~~~l~~l~~l~~~~~~~li~De-~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~----G~~~G~~~ 281 (421)
T 3l8a_A 207 GGRVWDNDDLIKIAELCKKHGVILVSDE-IHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIA----GTKNSFAI 281 (421)
T ss_dssp TTBCCCHHHHHHHHHHHHHHTCEEEEEC-TTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCG----GGCCEEEE
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEEc-cccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCc----hhheEeEE
Confidence 9998 789999999999999999953 3221110 0 11224666888887 888532 33468888
Q ss_pred Ec-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Q 001989 375 TS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGL 453 (985)
Q Consensus 375 ~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~ 453 (985)
++ +++.+.+.... ++ ....+.|. .+..+..+++ . .+.+.++++.++..++
T Consensus 282 ~~~~~l~~~~~~~~---------------------~~--~~~~~~n~---~~~~a~~aal--~-~~~~~~~~~~~~~~~~ 332 (421)
T 3l8a_A 282 IQNESLRRKFQYRQ---------------------LA--NNQHEVPT---VGMIATQAAF--Q-YGKPWLEELKTVIEGN 332 (421)
T ss_dssp CCSHHHHHHHHHHH---------------------HH--TTCSCCCH---HHHHHHHHHH--H-HCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH---------------------Hh--cccCCCCH---HHHHHHHHHH--h-ccHHHHHHHHHHHHHH
Confidence 87 67665541100 00 00011221 1222222222 2 3556688899999999
Q ss_pred HHHHHHHHhcCCCeEEcCCCCcceEEEecC----CHHHHHHHHHH-cCceeeee------cCCeEEEEeccCCCHHHHHH
Q 001989 454 AGTFALGLKKLGTVEVQGLPFFDTVKVKCA----DAHAIASAAYK-IEMNLRVV------DSNTVTASFDETTTLEDVDK 522 (985)
Q Consensus 454 a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~----~~~~v~~~L~~-~GI~~~~~------~~~~lris~t~~~t~edId~ 522 (985)
.+++++.|+++.++++..+...-.+.+.++ ...++.+.|.+ +||.+..- ..+.+|+++. +++++|++
T Consensus 333 ~~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~i~~ 410 (421)
T 3l8a_A 333 IKLVIKELEAKTKIKVMEPEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA--TPKNTVQE 410 (421)
T ss_dssp HHHHHHHHHHHCSCEEECCSBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC--SCHHHHHH
T ss_pred HHHHHHHHHhCCCceEeCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec--CCHHHHHH
Confidence 999999998862377764211111213332 26788889975 59987541 2588999988 68999999
Q ss_pred HHHHHhC
Q 001989 523 LFIVFAG 529 (985)
Q Consensus 523 li~aL~~ 529 (985)
+++.|.+
T Consensus 411 ~l~~l~~ 417 (421)
T 3l8a_A 411 ALSRIIS 417 (421)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998874
No 359
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.62 E-value=2.1e-14 Score=168.95 Aligned_cols=293 Identities=16% Similarity=0.131 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHhCCCc-cceecCcHHHHHHHHHHHHHHHHHh--cCC------------------CCCCEEEEc-CCCCc
Q 001989 634 FNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKA--RGD------------------HHRNVCIIP-VSAHG 691 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~-~~~~~~sGa~a~~a~l~air~~~~~--~g~------------------~~~~~IIv~-~~~Hg 691 (985)
.+++.+.++++++.+. ..++++||++|+++++++++.|... +|. .++++||+. ..+||
T Consensus 112 ~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg 191 (472)
T 1ohv_A 112 VEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHG 191 (472)
T ss_dssp HHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCC
T ss_pred HHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCccc
Confidence 3444555555653222 3467799999999999888766421 110 014778874 57898
Q ss_pred ccHHHHHHCCcE-----------EEEEcCCCC-C-------------CCCHHHHHHHHHhcCC---CEEEEEEEcC-CCc
Q 001989 692 TNPATAAMCGMK-----------IVSVGTDAK-G-------------NINIEELRKAAEANRD---NLSTLMVTYP-STH 742 (985)
Q Consensus 692 ~~~~~a~~~G~~-----------vv~v~~d~~-g-------------~iD~e~L~~~i~~~~~---~t~~Vvv~~p-n~~ 742 (985)
.........|.. +..+++... . ..|+++|+++|+++.+ ++++|+++.. |.+
T Consensus 192 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~ 271 (472)
T 1ohv_A 192 RTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEG 271 (472)
T ss_dssp SSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTT
T ss_pred ccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCC
Confidence 877665443321 112333110 0 1268999999974211 7898888753 568
Q ss_pred cccccC----HHHHHHHHHHcCCEEEEEccccccccCCC---CCCccC----CcEEEeCCcccccccCCCCCCceEEEEE
Q 001989 743 GVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVGLT---SPGYIG----ADVCHLNLHKTFCIPHGGGGPGMGPIGV 811 (985)
Q Consensus 743 G~i~~d----i~eI~~la~~~galliVD~a~~~~~~~l~---~pg~~g----~Di~~~s~hK~l~~p~g~GGPg~G~i~~ 811 (985)
|++. + +++|.++|+++|++||+|++|. +++-.. ....+| +|++++| |++ + || |+++
T Consensus 272 G~~~-~~~~~l~~l~~l~~~~g~lli~DEv~~-g~g~~g~~~~~~~~gv~~~~Di~t~s--K~~-l----~G---G~~~- 338 (472)
T 1ohv_A 272 GDNH-ASDDFFRKLRDISRKHGCAFLVDEVQT-GGGSTGKFWAHEHWGLDDPADVMTFS--KKM-M----TG---GFFH- 338 (472)
T ss_dssp TCBC-CCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGCCSSCCSEEEEC--GGG-S----SE---EEEE-
T ss_pred CCCC-CCHHHHHHHHHHHHHhCCEEEEeCccc-CCCCCCCchhccccCCCCCCCEEEEc--ccc-c----cC---CccC-
Confidence 9876 5 9999999999999999999985 222111 111234 7888765 873 1 22 6665
Q ss_pred cccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc--
Q 001989 812 KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH-- 889 (985)
Q Consensus 812 ~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g-- 889 (985)
++++....+... . +++.+++..++++.+.|..+..+++ .++..+++++|+++|++.
T Consensus 339 ~~~~~~~~~~~~---------------~----~T~~~~~~~~aaa~aal~~~~~~~~---~~~~~~~~~~l~~~L~~l~~ 396 (472)
T 1ohv_A 339 KEEFRPNAPYRI---------------F----NTWLGDPSKNLLLAEVINIIKREDL---LSNAAHAGKVLLTGLLDLQA 396 (472)
T ss_dssp CGGGSCSSSSSS---------------C----CSSSSCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcccccccc---------------c----CccCccHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHHHh
Confidence 655432111100 0 1122244445555666666654443 456677888888888752
Q ss_pred -CC--ee-ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccC
Q 001989 890 -YP--IL-FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSS 965 (985)
Q Consensus 890 -~~--l~-~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~ 965 (985)
+. +. ..+ .+. + +.+++.. +....++.++|.++|+.+.... .+.||++++..+|++|||+ +++
T Consensus 397 ~~~~~v~~~~~-~g~-~--~~~~~~~-----~~~~~~~~~~l~~~Gv~~~~~g---~~~iRi~~~~~~t~e~i~~--~~~ 462 (472)
T 1ohv_A 397 RYPQFISRVRG-RGT-F--CSFDTPD-----ESIRNKLISIARNKGVMLGGCG---DKSIRFRPTLVFRDHHAHL--FLN 462 (472)
T ss_dssp HCTTTCEEEEE-ETT-E--EEEECSS-----HHHHHHHHHHHHHTTEECEEET---TTEEEECCCTTCCHHHHHH--HHH
T ss_pred hCCCcEEeecC-Cce-E--EEEEeCC-----hhHHHHHHHHHHHCCeEEecCC---CCEEEEECCCCCCHHHHHH--HHH
Confidence 22 21 111 111 1 2334331 1135689999999999875432 3799999999999999999 888
Q ss_pred ChhHHHHhhc
Q 001989 966 PSEKKLHRLK 975 (985)
Q Consensus 966 ~l~~~~~~~~ 975 (985)
.|++++.++|
T Consensus 463 ~l~~~l~~~~ 472 (472)
T 1ohv_A 463 IFSDILADFK 472 (472)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHhcC
Confidence 9998887653
No 360
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.62 E-value=2.7e-14 Score=163.91 Aligned_cols=279 Identities=10% Similarity=0.021 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
...++++.+|+++|.+ ++.+++|||.+++.++.++.. ++||+|+++...|+++...++. .|++++.++.
T Consensus 33 ~~~~l~~~la~~~~~~--~v~~~~ggt~al~~~~~~l~~--~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~v~~~~~ 104 (394)
T 1o69_A 33 FVNRFEQSVKDYSKSE--NALALNSATAALHLALRVAGV--KQDDIVLASSFTFIASVAPICY----LKAKPVFIDCDET 104 (394)
T ss_dssp HHHHHHHHHHHHHCCS--EEEEESCHHHHHHHHHHHTTC--CTTCEEEEESSSCGGGTHHHHH----TTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCC--CCCCEEEECCCccHHHHHHHHH----cCCEEEEEEeCCC
Confidence 4567889999999984 588999999888877766533 3789999999999999988864 5888888764
Q ss_pred -----hhhhc-cCC---CEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCC---CCc-ccceEEEec
Q 001989 289 -----KDIDY-KSG---DVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP---PGE-LGADIVVGS 355 (985)
Q Consensus 289 -----~~l~~-l~~---~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~---~~~-~GaDi~v~s 355 (985)
+++++ +++ ++++|++++ ++|...|+++|.++|+++|+++++| +..+.|.... .+. .++|+..++
T Consensus 105 ~~~d~~~l~~~i~~~~~~~~~v~~~~--~~G~~~~l~~i~~l~~~~~~~li~D-ea~~~g~~~~~~~~~~~~~~~~~s~s 181 (394)
T 1o69_A 105 YNIDVDLLKLAIKECEKKPKALILTH--LYGNAAKMDEIVEICKENDIVLIED-AAEALGSFYKNKALGTFGEFGVYSYN 181 (394)
T ss_dssp SSBCHHHHHHHHHHCSSCCCEEEEEC--GGGCCCCHHHHHHHHHHTTCEEEEE-CTTCTTCEETTEETTSSSSEEEEECC
T ss_pred CCcCHHHHHHHHhcccCCceEEEEEC--CCCChhhHHHHHHHHHHcCCEEEEE-CcCcccceeCCcccccccCcEEEEEe
Confidence 34555 544 689999886 6899999999999999999999995 3444443211 112 357888887
Q ss_pred C-ccccccCCCCCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH
Q 001989 356 A-QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 356 ~-k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~ 433 (985)
. |.+ ||+++|+++++ +++.+.+.....+. .+ ....| |. +..++..+|+++ .+..+ +
T Consensus 182 ~~K~l------~~~~~G~~~~~~~~l~~~l~~~~~~~-~~--~~~~~----~~--~~~g~~~~~~~~------~aa~~-l 239 (394)
T 1o69_A 182 GNKII------TTSGGGMLIGKNKEKIEKARFYSTQA-RE--NCLHY----EH--LDYGYNYRLSNV------LGAIG-V 239 (394)
T ss_dssp TTSSS------CCSSCEEEEESCHHHHHHHHHHTBTC-CC--SSSSC----CC--SSCCCBCBCCHH------HHHHH-H
T ss_pred CCccC------CCCCceEEEECCHHHHHHHHHHHHhc-cc--cCccc----cc--cccCcccCcCHH------HHHHH-H
Confidence 6 644 33457999995 67665542110000 00 00001 10 011122233333 11111 1
Q ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-----CCcceEEEecC----------------------C--
Q 001989 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-----PFFDTVKVKCA----------------------D-- 484 (985)
Q Consensus 434 ~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-----~~~~~~~~~~~----------------------~-- 484 (985)
.. .+-+++..++..++.+++.+.|+++ +++... +.+..+.+.++ +
T Consensus 240 --~~--l~~l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (394)
T 1o69_A 240 --AQ--MEVLEQRVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPK 313 (394)
T ss_dssp --HH--HTTHHHHHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHH
T ss_pred --HH--HHHHHHHHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEEecchhhccccccccccccccccccccC
Confidence 11 1236678888899999999999886 665532 12223444443 2
Q ss_pred HHHHHHHHHHcCceeeeec---------C---------------CeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 485 AHAIASAAYKIEMNLRVVD---------S---------------NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 ~~~v~~~L~~~GI~~~~~~---------~---------------~~lris~t~~~t~edId~li~aL~~ 529 (985)
..++.+.|.++||.++... . ..+++..+.++|+||+|+++++|++
T Consensus 314 ~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~ 382 (394)
T 1o69_A 314 ISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILK 382 (394)
T ss_dssp HHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 6789999999999775321 0 3466667889999999999999974
No 361
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.62 E-value=3.8e-14 Score=164.81 Aligned_cols=291 Identities=12% Similarity=0.113 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHHh-CCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHH------------
Q 001989 633 MFNNLGEWLCTIT-GFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAA------------ 698 (985)
Q Consensus 633 ~~~e~~~~la~l~-G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~------------ 698 (985)
...++++++++++ +.+ ..++.+||++|+++++.++|.+. ++++||+ ...+||.......
T Consensus 97 ~~~~l~~~la~~~~~~~-~v~~~~sgseA~~~al~~ar~~~------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p 169 (434)
T 2epj_A 97 AEVLLAEKILGYVKRGG-MIRFVNSGTEATMTAIRLARGYT------GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVP 169 (434)
T ss_dssp HHHHHHHHHHHHHCTTC-EEEEESSHHHHHHHHHHHHHHHH------CCCEEEEEETCCCCSSGGGSEECC------CEE
T ss_pred HHHHHHHHHHHhCCCCC-EEEEeCCHHHHHHHHHHHHHHhh------CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCC
Confidence 4567889999998 443 34667889999988887766542 3456666 4567875432211
Q ss_pred -HCCc------EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEE
Q 001989 699 -MCGM------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMD 766 (985)
Q Consensus 699 -~~G~------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD 766 (985)
..|+ +++.+|. .|+++|+++++++.+++++|+++.. +.+|.+. + +++|.++|+++|+++|+|
T Consensus 170 ~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~-~~~~~l~~l~~l~~~~g~~lI~D 243 (434)
T 2epj_A 170 TSAGVPEAVARLTLVTPY-----NDVEALERVFAEYGDRIAGVIVEPVIANAGVIP-PRREFLAALQRLSRESGALLILD 243 (434)
T ss_dssp SSTTCCHHHHTTEEEEET-----TCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBC-CCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCCcccCceEecCC-----CCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccC-CCHHHHHHHHHHHHHcCCEEEEE
Confidence 1243 3555665 3899999999743346777766543 3479876 6 999999999999999999
Q ss_pred ccccccccCCCCCC-----ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCC
Q 001989 767 GANMNAQVGLTSPG-----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGT 841 (985)
Q Consensus 767 ~a~~~~~~~l~~pg-----~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~ 841 (985)
++|. ++ .....+ ...+|++++ +|+|+ +|..+|++++++++.+.+... +. . .
T Consensus 244 Ev~~-g~-~~g~~~~~~~~~~~~di~s~--sK~l~-----~G~~~G~v~~~~~~~~~l~~~--~~-----------~--~ 299 (434)
T 2epj_A 244 EVVT-GF-RLGLEGAQGYFNIEGDIIVL--GKIIG-----GGFPVGAVAGSREVMSLLTPQ--GK-----------V--F 299 (434)
T ss_dssp ETTT-TT-TSSTTHHHHHHTCCCSEEEE--EGGGG-----TTSSCEEEEECHHHHTTBTTT--SS-----------B--C
T ss_pred cchh-ce-eCCcchhhHHhCCCCCeeee--cchhc-----CCcceeeeeecHHHHHhhccC--CC-----------c--c
Confidence 9985 22 111111 124788755 59885 245688999998776654321 00 0 0
Q ss_pred CCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCe--eecCCCCceeeEEEEEecCcc---
Q 001989 842 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPI--LFRGVNGTVAHEFIVDLRGLK--- 913 (985)
Q Consensus 842 i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l--~~~~~~~~~~~~~iv~~~~~~--- 913 (985)
..+++.+++..++++.+.|..+..+. ..++..+++++++++|++. +++ ...+ .+.+ +.+.+....
T Consensus 300 ~~~t~~~~~~~~aa~~a~l~~~~~~~---~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~---~~i~~~~~~~~~ 372 (434)
T 2epj_A 300 NAGTFNAHPITMAAGLATLKALEEEP---VYSVSREAAKALEEAASEVLDRTGLPYTINR-VESM---MQLFIGVEEVSN 372 (434)
T ss_dssp CCCTTTTCHHHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHHHHHHHHHHTCCEEEEE-ETTE---EEEEETCSCCSS
T ss_pred cCCCCCcCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHhhCCCcEEEEE-eeeE---EEEEEeCCCccc
Confidence 00112224444555556666554433 3456667788888888652 122 1111 1222 334443100
Q ss_pred -----ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 914 -----NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 914 -----~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
........++.+.|.++||.+..... ..+ .++..+|++|+++ ++++|+++++++
T Consensus 373 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~--~~~~~~t~e~i~~--~l~~l~~~l~~~ 431 (434)
T 2epj_A 373 AAQARKADKKFYVKLHEEMLRRGVFIAPSNL---EAV--FTGLPHQGEALEI--AVEGLRSSLKTV 431 (434)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHTTEECCSSTT---SCE--ECCTTCSHHHHHH--HHHHHHHHHHHH
T ss_pred chhccccCHHHHHHHHHHHHHCCeEEeccCC---CcE--EEeccCCHHHHHH--HHHHHHHHHHHH
Confidence 00001256789999999998865432 234 4567899999999 888999888765
No 362
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.62 E-value=6.1e-14 Score=162.04 Aligned_cols=268 Identities=11% Similarity=0.096 Sum_probs=176.8
Q ss_pred HHHHHhcC--CCC-cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc------
Q 001989 218 TMIADLTG--LPM-SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL------ 288 (985)
Q Consensus 218 ~~ia~L~g--~~~-~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~------ 288 (985)
+.+.+..| .++ .++.+++|+|.++++++.++ . ++||+|+++...|+.+...++. .|.+++.++.
T Consensus 78 ~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~-~--~~gd~vl~~~p~~~~~~~~~~~----~g~~~~~~~~~~~~~~ 150 (422)
T 3fvs_A 78 SFFGELLGQEIDPLRNVLVTVGGYGALFTAFQAL-V--DEGDEVIIIEPFFDCYEPMTMM----AGGRPVFVSLKPGPIQ 150 (422)
T ss_dssp HHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHH-C--CTTCEEEEEESCCTTHHHHHHH----TTCEEEEEECBCCCCC
T ss_pred HHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHH-c--CCCCEEEEcCCCchhhHHHHHH----cCCEEEEEeccccccc
Confidence 34444444 444 57889999998887776654 2 3889999999999998887653 4777766543
Q ss_pred --------------hhhhc-cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCC-----C-
Q 001989 289 --------------KDIDY-KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK-----P- 343 (985)
Q Consensus 289 --------------~~l~~-l~~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~-----~- 343 (985)
+++++ +++++++|++.+| |.+|.+. ++++|+++|+++|+++++|. ..+..... +
T Consensus 151 ~G~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~ 229 (422)
T 3fvs_A 151 NGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDE-VYQWMVYDGHQHISI 229 (422)
T ss_dssp SSSCCBGGGSBCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC-TTTTCBCTTCCCCCG
T ss_pred ccccccccCCCCCHHHHHhhcCCCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEc-cchhhccCCCCCCCh
Confidence 34555 7788999999998 7899987 69999999999999999953 33321110 1
Q ss_pred ---CCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 344 ---PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 344 ---~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
+..++.++++.|. |.|+.| |..+|++++++++++.+... + ..+.+
T Consensus 230 ~~~~~~~~~~i~~~S~sK~~g~~----G~r~G~~~~~~~~~~~~~~~--------------------------~-~~~~~ 278 (422)
T 3fvs_A 230 ASLPGMWERTLTIGSAGKTFSAT----GWKVGWVLGPDHIMKHLRTV--------------------------H-QNSVF 278 (422)
T ss_dssp GGSTTTGGGEEEEEEHHHHHTCG----GGCCEEEECCHHHHHHHHHH--------------------------H-HTTTC
T ss_pred hhcccccCcEEEEecchhccCCc----cceEEEEEeCHHHHHHHHHH--------------------------H-hhccC
Confidence 1235677888887 888532 34579999888877654100 0 01111
Q ss_pred ccchhHHHHHHHHHHHHH------hCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC---------
Q 001989 420 ICTAQALLANMAAMYAVY------HGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--------- 484 (985)
Q Consensus 420 i~t~~~l~a~~aa~~l~~------~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--------- 484 (985)
.++.....+..+++ .. ...+.++++.++..++.+++.+.|+++| +++..+....-+.+.++.
T Consensus 279 ~~~~~~~~a~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (422)
T 3fvs_A 279 HCPTQSQAAVAESF--EREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVG-LKPIIPQGSYFLITDISDFKRKMPDLP 355 (422)
T ss_dssp CCCHHHHHHHHHHH--HHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTT-CEEEBCSBSSEEEEECHHHHHHCCCCC
T ss_pred CCCcHHHHHHHHHH--hhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcC-CeecCCCeeeEEEEechhhcccccccc
Confidence 11112222222222 21 2356788899999999999999999997 886532111112233221
Q ss_pred -------HHHHHHHHH-HcCceeeee-----------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 485 -------AHAIASAAY-KIEMNLRVV-----------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 -------~~~v~~~L~-~~GI~~~~~-----------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..++.+.|. ++||.+..- ..+.+|++++. |+++|+++++.|..
T Consensus 356 ~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~ 417 (422)
T 3fvs_A 356 GAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK--DEATLQAMDEKLRK 417 (422)
T ss_dssp CCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC--CHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 346777755 579977431 14789999886 99999999998873
No 363
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.62 E-value=2.9e-14 Score=165.69 Aligned_cols=271 Identities=13% Similarity=0.099 Sum_probs=176.5
Q ss_pred HHHHHHHHhcC--------CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 215 NFQTMIADLTG--------LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 215 e~q~~ia~L~g--------~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
++++.+|++++ .++.++.+++|+|.++++++.++. ++||+|++++..|+++...++. ..|.+++.+
T Consensus 90 ~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~---~~gd~vl~~~p~~~~~~~~~~~---~~g~~~~~~ 163 (435)
T 3piu_A 90 AFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA---DPGEAVLIPTPYYPGFDRDLKW---RTGVEIVPI 163 (435)
T ss_dssp HHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC---CTTCEEEEEESCCTTHHHHTTT---TTCCEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhc---CCCCeEEECCCccccHHHHHHH---hcCCEEEEe
Confidence 46677788777 567789999999988888776652 3889999999999998877531 468888776
Q ss_pred Cc----------hhhhc-cC------CCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCCC--
Q 001989 287 DL----------KDIDY-KS------GDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILKP-- 343 (985)
Q Consensus 287 ~~----------~~l~~-l~------~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~~-- 343 (985)
+. ++|++ +. .++++|++++| |.+|.+. ++++|+++|+++|+++++| +..+.+....
T Consensus 164 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D-ea~~~~~~~~~~ 242 (435)
T 3piu_A 164 HCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISD-EIYSGTAFSSPS 242 (435)
T ss_dssp ECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE-CTTGGGCCSSSC
T ss_pred eCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe-ccccccccCCCC
Confidence 53 34544 43 38999999998 7799885 4688999999999999995 3433322211
Q ss_pred C---C----cccc---------eEEEecC-ccccccCCCCCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecc
Q 001989 344 P---G----ELGA---------DIVVGSA-QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQ 405 (985)
Q Consensus 344 ~---~----~~Ga---------Di~v~s~-k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~ 405 (985)
. . ++|+ ++++++. |.|+. +|..+|+++++ +.+.+.+.
T Consensus 243 ~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~----~G~r~G~~~~~~~~~~~~~~--------------------- 297 (435)
T 3piu_A 243 FISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGL----PGFRVGAIYSNDDMVVAAAT--------------------- 297 (435)
T ss_dssp CCCHHHHHHC-------CGGGGEEEEEESSSSSCC----GGGCEEEEEESCHHHHHHHH---------------------
T ss_pred CcCHHHhccccccccccCCCCCEEEEEeeecccCC----CceeEEEEEeCCHHHHHHHH---------------------
Confidence 0 1 1122 2888886 87753 23457888884 44443320
Q ss_pred cccccccccccCCCccchhHHHHHHHHHHHHHhC--cchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC
Q 001989 406 TREQHIRRDKATSNICTAQALLANMAAMYAVYHG--PEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA 483 (985)
Q Consensus 406 tre~~irre~atsni~t~~~l~a~~aa~~l~~~g--~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 483 (985)
+...+ ..++....+.++++ +.... .+.++++.++..++.+++++.|++.| +++.......-+.+.++
T Consensus 298 -------~~~~~--~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~l~ 366 (435)
T 3piu_A 298 -------KMSSF--GLVSSQTQHLLSAM-LSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSG-ISCLNGNAGLFCWVDMR 366 (435)
T ss_dssp -------HHGGG--SCCCHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CEECCCCSSSEEEEECG
T ss_pred -------HHhhc--CCCCHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccCCCeeEEEEEEcc
Confidence 00000 01111221222221 11110 23457778888899999999999987 88764322112333333
Q ss_pred C---------HHHHHHHHHHc-Cceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 484 D---------AHAIASAAYKI-EMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 484 ~---------~~~v~~~L~~~-GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. ..++.++|.++ ||.+... .++.+|+++... |++||+++++.|.+
T Consensus 367 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~-~~e~i~~~l~~l~~ 427 (435)
T 3piu_A 367 HLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANL-PERTLDLAMQRLKA 427 (435)
T ss_dssp GGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSS-CHHHHHHHHHHHHH
T ss_pred cccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCC-CHHHHHHHHHHHHH
Confidence 1 45788888877 9987542 257899999766 99999999999874
No 364
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.62 E-value=1.3e-14 Score=164.93 Aligned_cols=270 Identities=11% Similarity=0.087 Sum_probs=177.0
Q ss_pred HHHHHHHhcC------CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC--
Q 001989 216 FQTMIADLTG------LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD-- 287 (985)
Q Consensus 216 ~q~~ia~L~g------~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~-- 287 (985)
+++.+|++++ .++.++.+++|+|.++++++.++. ++||+|+++...|+++...++. .|.+++.++
T Consensus 63 lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~---~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~~~~~ 135 (377)
T 3fdb_A 63 LSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFT---PAQSKVIVPTPAYPPFFHLLSA----TQREGIFIDAT 135 (377)
T ss_dssp HHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS---CTTCCEEEEESCCTHHHHHHHH----HTCCEEEEECT
T ss_pred HHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhc---CCCCEEEEcCCCcHhHHHHHHH----cCCEEEEccCC
Confidence 4566666666 667789999999988887776542 3789999999999998888754 366666664
Q ss_pred ----chhhhc-cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCC---CC---C---cccc
Q 001989 288 ----LKDIDY-KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK---PP---G---ELGA 349 (985)
Q Consensus 288 ----~~~l~~-l~~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~---~~---~---~~Ga 349 (985)
++++++ +++++++|++.+| |.+|.+. ++++|+++|+++|+++++|. ..+..... .+ . ..+.
T Consensus 136 ~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De-~~~~~~~~g~~~~~~~~~~~~~~~ 214 (377)
T 3fdb_A 136 GGINLHDVEKGFQAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDE-IHAPLVFDGQHTVAAGVSDTAASV 214 (377)
T ss_dssp TSCCHHHHHHHHHTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEEC-TTGGGBSSSCCCCGGGSCHHHHHH
T ss_pred CCCCHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEc-ccchhhcCCCCCcccHHHccCCCc
Confidence 356666 7777899999998 7899886 57888888999999999953 33321111 11 1 2455
Q ss_pred eEEEecC-ccccccCCCCCCcEEEEEE-chhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHH
Q 001989 350 DIVVGSA-QRFGVPMGYGGPHAAFLAT-SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALL 427 (985)
Q Consensus 350 Di~v~s~-k~lg~P~~~GGP~~G~l~~-~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~ 427 (985)
+++++|. |.++.| |..+|++.+ ++++.+.+.. ... . ...+.|. ....
T Consensus 215 ~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~~~~~----------~~~------------~--~~~~~~~---~~~~ 263 (377)
T 3fdb_A 215 CITITAPSKAWNIA----GLKCAQIIFSNPSDAEHWQQ----------LSP------------V--IKDGAST---LGLI 263 (377)
T ss_dssp EEEEECSTTTTTCG----GGCCEEEECCSHHHHHHHHH----------SCH------------H--HHCCCCH---HHHH
T ss_pred EEEEEeChHhccCc----chhheEEEeCCHHHHHHHHH----------HHH------------h--hcCCCCH---HHHH
Confidence 6888887 877532 334687776 5666554410 000 0 0011111 1222
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc-CCCeEEcCCCCcceEEEecCC---HHHHHHHHHHc-Cceeeee
Q 001989 428 ANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKI-EMNLRVV 502 (985)
Q Consensus 428 a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~-GI~~~~~ 502 (985)
+..+++ . .+.+.++++.++..++.+++.+.|++ ++++++..+...-.+.++++. ..++.+.|.++ ||.+...
T Consensus 264 a~~~~l--~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g 340 (377)
T 3fdb_A 264 AAEAAY--R-YGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDG 340 (377)
T ss_dssp HHHHHH--H-HCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSBCSEEEEECTTSCCCSCHHHHHHHHHCEECEEG
T ss_pred HHHHHH--h-ccHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCeeEEEEEECcccCCCHHHHHHHHHhCCEEecCC
Confidence 222222 2 33556788899999999999999998 433887643211122344442 35667777665 9988542
Q ss_pred ------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 ------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++.+|++++ +++++|+++++.|.+
T Consensus 341 ~~~~~~~~~~~Ris~~--~~~e~i~~~l~~l~~ 371 (377)
T 3fdb_A 341 AWFGEDGTGFCRLNFA--TSREVLEEAIDRMAK 371 (377)
T ss_dssp GGGCGGGTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred hhccCCCCCEEEEEeC--CCHHHHHHHHHHHHH
Confidence 2588999988 489999999998874
No 365
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.62 E-value=5.4e-15 Score=170.43 Aligned_cols=275 Identities=11% Similarity=0.062 Sum_probs=172.1
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHH-hhcCCCeEEEE------
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICIT-RADGFDIKVVV------ 285 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~-~a~~~gi~v~~------ 285 (985)
...+++++++++|++.+++. +.+||.++++++.++ . ++||+|+++...|+++...... ...+.++....
T Consensus 78 ~~~~~~~la~~~~~~~~~v~-~~sGs~a~~~a~~~~-~--~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 153 (420)
T 3gbx_A 78 EQLAIDRAKELFGADYANVQ-PHSGSQANFAVYTAL-L--QPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDES 153 (420)
T ss_dssp HHHHHHHHHHHHTCSEEECC-CSSHHHHHHHHHHHH-C--CTTCEEEEEEEC------------CHHHHSEEEEEEECTT
T ss_pred HHHHHHHHHHHhCCCCceeE-ecCcHHHHHHHHHHh-c--CCCCEEEecchhhcceeccchhhhhcccceeEEeccCCcc
Confidence 33456899999999876664 455677777665544 2 3899999999999885422211 01112233332
Q ss_pred --eCchhhhc-cCC-CEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCC-----CCCCcccceEEEecC
Q 001989 286 --SDLKDIDY-KSG-DVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-----KPPGELGADIVVGSA 356 (985)
Q Consensus 286 --v~~~~l~~-l~~-~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l-----~~~~~~GaDi~v~s~ 356 (985)
+|+++|++ +++ ++++|++++||+ |.+.|+++|.++|+++|+++++| +.++.|.. ..+.. ++||+++|.
T Consensus 154 ~~~d~~~l~~~i~~~~~~~v~~~~~~~-~~~~~l~~l~~l~~~~~~~li~D-e~~~~~~~~~~~~~~~~~-~~di~~~s~ 230 (420)
T 3gbx_A 154 GKIDYDEMAKLAKEHKPKMIIGGFSAY-SGVVDWAKMREIADSIGAYLFVD-MAHVAGLIAAGVYPNPVP-HAHVVTTTT 230 (420)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEECCTTC-CSCCCHHHHHHHHHHTTCEEEEE-CTTTHHHHHTTSSCCSTT-TSSEEEEES
T ss_pred CCcCHHHHHHHHHhcCCeEEEEecCcc-CCccCHHHHHHHHHHcCCEEEEE-CCcchhceecccCCcccc-cCCEEEeec
Confidence 34466766 654 588998888875 66889999999999999999995 34333322 11122 489999998
Q ss_pred -ccccccCCCCCCcEEEEEEch---hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 357 -QRFGVPMGYGGPHAAFLATSQ---EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 357 -k~lg~P~~~GGP~~G~l~~~~---~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
|.|++ |..|++++++ ++.+.+...... . ..++++ +....++.++
T Consensus 231 sK~~~g------~~gg~~~~~~~~~~~~~~~~~~~~~------------~-----------~~~~~~---~~~~~a~~~a 278 (420)
T 3gbx_A 231 HKTLAG------PRGGLILAKGGDEELYKKLNSAVFP------------S-----------AQGGPL---MHVIAGKAVA 278 (420)
T ss_dssp SGGGCS------CSCEEEEESSCCHHHHHHHHHHHC---------------------------CCCC---HHHHHHHHHH
T ss_pred ccCCCC------CCceEEEEcCCcHHHHHHhhhhcCC------------C-----------CCCCcc---hhHHHHHHHH
Confidence 87743 3348888886 555443110000 0 001111 1222233222
Q ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-CCcceEEEecC--C--HHHHHHHHHHcCceeee------
Q 001989 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCA--D--AHAIASAAYKIEMNLRV------ 501 (985)
Q Consensus 433 ~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~~~~~--~--~~~v~~~L~~~GI~~~~------ 501 (985)
+ .....++++++.++..++.+++++.|++.| ++++.. .....+.+..+ + ...+.+.|.++||.+..
T Consensus 279 ~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~ 355 (420)
T 3gbx_A 279 L--KEAMEPEFKVYQQQVAKNAKAMVEVFLNRG-YKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPND 355 (420)
T ss_dssp H--HHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTC
T ss_pred H--HHHHhHhHHHHHHHHHHHHHHHHHHHHhcC-CeeccCCCCCeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCC
Confidence 2 344456788999999999999999999987 888642 22333444432 2 77888899899998765
Q ss_pred ----ecCCeEEEEeccC----CCHHHHHHHHHHHhC
Q 001989 502 ----VDSNTVTASFDET----TTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ----~~~~~lris~t~~----~t~edId~li~aL~~ 529 (985)
..+..+|+++... .+++||++++++|.+
T Consensus 356 ~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~ 391 (420)
T 3gbx_A 356 PKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCD 391 (420)
T ss_dssp SSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ccccCCCcceEEecchhcccCCCHHHHHHHHHHHHH
Confidence 1135699998765 458999999999874
No 366
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.61 E-value=7.3e-15 Score=168.54 Aligned_cols=272 Identities=12% Similarity=0.069 Sum_probs=182.9
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-----
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----- 288 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----- 288 (985)
.++++.+|+++|.++.++.+++|++.+++.++.++. ++||+|+++...|+++...++ ..|.+++.++.
T Consensus 77 ~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~---~~gd~Vl~~~p~y~~~~~~~~----~~g~~~~~~~~~~~~~ 149 (397)
T 2zyj_A 77 APLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFL---DEGSPVLLEAPSYMGAIQAFR----LQGPRFLTVPAGEEGP 149 (397)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC---CTTCEEEEEESCCHHHHHHHH----TTCCEEEEEEEETTEE
T ss_pred HHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhC---CCCCEEEEeCCCcHHHHHHHH----HcCCEEEecCcCCCCC
Confidence 357789999999888889999999988887766542 378999999999999888765 35777777643
Q ss_pred --hhhhc-cCC-CEeEEE-EEcC-CCCeeeccH---HHHHHHHHhCCcEEEEEecCccccCC-----CCCCcccce----
Q 001989 289 --KDIDY-KSG-DVCGVL-VQYP-GTEGEVLDY---GDFIKNAHANGVKVVMATDLLALTIL-----KPPGELGAD---- 350 (985)
Q Consensus 289 --~~l~~-l~~-~t~~V~-v~~p-n~~G~v~di---~~I~~~a~~~galliV~a~~~~lg~l-----~~~~~~GaD---- 350 (985)
++|++ +++ ++++|+ +.+| |.+|.+.|. ++|+++|+++|+++++| +..+.... .+...++.|
T Consensus 150 d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~D-e~~~~~~~~g~~~~~~~~~~~~~~~~ 228 (397)
T 2zyj_A 150 DLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVED-DAYRELYFGEARLPSLFELAREAGYP 228 (397)
T ss_dssp CHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEE-CTTTTCBCSSCCCCCHHHHHHHHTCC
T ss_pred CHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEe-CCcccccCCCCCCCchhhhCcccCCC
Confidence 45665 554 788875 5677 789998764 59999999999999995 33333221 111334444
Q ss_pred --EEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHH
Q 001989 351 --IVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALL 427 (985)
Q Consensus 351 --i~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~ 427 (985)
++++|. |.|+ | |-.+|++++++++.+.+.... . . ...+++...
T Consensus 229 ~~i~~~s~sK~~~-~----G~r~G~~~~~~~~~~~l~~~~-------------------------~-~--~~~~~~~~~- 274 (397)
T 2zyj_A 229 GVIYLGSFSKVLS-P----GLRVAFAVAHPEALQKLVQAK-------------------------Q-G--ADLHTPMLN- 274 (397)
T ss_dssp CEEEEEESTTTTC-G----GGCCEEEECCHHHHHHHHHHH-------------------------H-H--HHSSCCHHH-
T ss_pred eEEEEeccccccc-c----cceeEEEecCHHHHHHHHHHH-------------------------H-h--hcCCCCHHH-
Confidence 888887 7764 3 234699999988776551100 0 0 001111111
Q ss_pred HHHHHHHHHHhCc-chHHHHHHHHHHHHHHHHHHHhcC-C-CeEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeee
Q 001989 428 ANMAAMYAVYHGP-EGLKTIAQRVHGLAGTFALGLKKL-G-TVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRV 501 (985)
Q Consensus 428 a~~aa~~l~~~g~-~Gl~~i~~~~~~~a~~l~~~L~~~-g-~~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~ 501 (985)
..++..++.. +. +.++++.++..++.+++.+.|++. + ++++..+....-+.+..+. ..++.+.|.++||.+..
T Consensus 275 ~~a~~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~gi~v~~ 353 (397)
T 2zyj_A 275 QMLVHELLKE-GFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPKGLSAEGLFRRALEENVAFVP 353 (397)
T ss_dssp HHHHHHHHTT-THHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSSEEEEECSTTCCHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCccEEEEEEcCCCCCHHHHHHHHHHCCCEEec
Confidence 1111111221 11 457788888889999999999874 2 3777532222234455542 78899999999998754
Q ss_pred e--------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 502 V--------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ~--------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. .++.+|++++.. |++||++++++|.+
T Consensus 354 g~~f~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~ 388 (397)
T 2zyj_A 354 GGPFFANGGGENTLRLSYATL-DREGIAEGVRRLGR 388 (397)
T ss_dssp SGGGCTTSCCTTEEEEECSSS-CHHHHHHHHHHHHH
T ss_pred hHHhcCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHH
Confidence 2 247899999885 99999999999974
No 367
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.61 E-value=2.3e-15 Score=172.81 Aligned_cols=270 Identities=12% Similarity=0.090 Sum_probs=164.7
Q ss_pred cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCC--CCCCCCHHHHHHHHHhcCCCE
Q 001989 654 PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD--AKGNINIEELRKAAEANRDNL 731 (985)
Q Consensus 654 ~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d--~~g~iD~e~L~~~i~~~~~~t 731 (985)
+++|++++..++.+++.+ .+++++|+++++.|..+...++..|++++.+|++ .++.+|++++++.+++.++++
T Consensus 102 t~G~~~al~~~~~~l~~~-----~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~ 176 (401)
T 7aat_A 102 GISGTGSLRVGANFLQRF-----FKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKS 176 (401)
T ss_dssp EEHHHHHHHHHHHHHHHH-----CTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTC
T ss_pred cCcchHHHHHHHHHHHHh-----ccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCc
Confidence 455666665444444332 1367899999998988888889999999999985 358899999998887544688
Q ss_pred EEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccc-cccCCC--C------CCccCCcEEEeCCcccccccC
Q 001989 732 STLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMN-AQVGLT--S------PGYIGADVCHLNLHKTFCIPH 799 (985)
Q Consensus 732 ~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~-~~~~l~--~------pg~~g~Di~~~s~hK~l~~p~ 799 (985)
++|++++| |++|.+. .++++|+++|+++|+++++|.++.. ..++.. . .....-.+++.|++|+|++|
T Consensus 177 ~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~- 255 (401)
T 7aat_A 177 IILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLY- 255 (401)
T ss_dssp EEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCG-
T ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccc-
Confidence 99999998 4799764 2689999999999999999998731 111100 0 01223467889999998653
Q ss_pred CCCCCceEEEEE---ccc----ccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHH--h-c--HHH
Q 001989 800 GGGGPGMGPIGV---KKH----LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM--M-G--SKG 867 (985)
Q Consensus 800 g~GGPg~G~i~~---~~~----l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~--l-g--~eG 867 (985)
|.++|++++ +++ +...+.... ...+.+... .++ .++..++.. + . .+.
T Consensus 256 ---G~RiG~l~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~--~~~----~~~~~~l~~~~~~~~~~~~ 314 (401)
T 7aat_A 256 ---GERAGAFTVICRDAEEAKRVESQLKILI------------RPMYSNPPM--NGA----RIASLILNTPELRKEWLVE 314 (401)
T ss_dssp ---GGCEEEEEEECSSHHHHHHHHHHHHHHH------------HHHHSSCCH--HHH----HHHHHHHHCHHHHHHHHHH
T ss_pred ---cCceEEEEEEeCCHHHHHHHHHHHHHHH------------HhccCCCCh--HHH----HHHHHHhCCHHHHHHHHHH
Confidence 677999886 222 111111000 000111110 111 111112210 0 0 233
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-cCC--eeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCE
Q 001989 868 LTEASKIAILNANYMAKRLEK-HYP--ILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGT 944 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~-g~~--l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~ 944 (985)
+.+..++..++++++.+.|++ +.. +....+.+.++ .+ . +.+.+.+...|.++||.+. ..
T Consensus 315 ~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~---~~--~------~~~~~~~~~ll~~~gi~v~-------~~ 376 (401)
T 7aat_A 315 VKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMF---CF--T------GLKPEQVERLTKEFSIYMT-------KD 376 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSSE---EE--C------CCCHHHHHHHHHHHCEECC-------TT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCceecCCcceE---Ee--c------CCCHHHHHHHHHhCCEecc-------CC
Confidence 455566777888999999976 311 21111112221 11 1 2455666555567799873 24
Q ss_pred EEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 945 LMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 945 lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
+||++...+++ |||+ +++.|++++
T Consensus 377 ~Ris~~~~~~~-~i~~--~~~~l~~~~ 400 (401)
T 7aat_A 377 GRISVAGVASS-NVGY--LAHAIHQVT 400 (401)
T ss_dssp CEEEGGGCCTT-THHH--HHHHHHHHH
T ss_pred CeEEeccCChh-hHHH--HHHHHHHHh
Confidence 79998865554 5999 777777664
No 368
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.61 E-value=2.8e-14 Score=165.41 Aligned_cols=268 Identities=14% Similarity=0.153 Sum_probs=177.9
Q ss_pred HHHHHHHHhcC--------CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 215 NFQTMIADLTG--------LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 215 e~q~~ia~L~g--------~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
++++.+|+++| .++.++.+++|+|.++++++.++. ++||+|++++..|+++...+ +...|++++.+
T Consensus 87 ~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~---~~gd~Vl~~~p~y~~~~~~~---~~~~g~~~~~v 160 (428)
T 1iay_A 87 EFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA---DPGDAFLVPSPYYPAFNRDL---RWRTGVQLIPI 160 (428)
T ss_dssp HHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC---CTTCEEEEESSCCTTHHHHT---TTTTCCEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhC---CCCCeEEEccCCCcchHHHH---HHhcCCEEEEe
Confidence 46677777776 667788899999988887776652 37899999999999887654 33468888887
Q ss_pred Cch----------hhhc-cC------CCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCCC---
Q 001989 287 DLK----------DIDY-KS------GDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILK--- 342 (985)
Q Consensus 287 ~~~----------~l~~-l~------~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l~--- 342 (985)
+.+ ++++ ++ +++++|++++| |.+|.+.| +++|+++||++|+++++| +..+.....
T Consensus 161 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D-ea~~~~~~~~~~ 239 (428)
T 1iay_A 161 HCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCD-EIYAATVFDTPQ 239 (428)
T ss_dssp CCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEE-CTTGGGCCSSSC
T ss_pred ecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEe-ccccccccCCCC
Confidence 642 3443 43 37999999998 56999998 999999999999999995 333321111
Q ss_pred C-C-Cc---------ccce--EEEecC-ccccccCCCCCCcEEEEEE-chhhHhcCCCceeeeeecCCCCcceeeecccc
Q 001989 343 P-P-GE---------LGAD--IVVGSA-QRFGVPMGYGGPHAAFLAT-SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTR 407 (985)
Q Consensus 343 ~-~-~~---------~GaD--i~v~s~-k~lg~P~~~GGP~~G~l~~-~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tr 407 (985)
. + .. ++.| +++.|. |.|+.| |--+|++.+ ++++++.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~----Glr~G~~~~~~~~~~~~~~----------------------- 292 (428)
T 1iay_A 240 FVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLP----GFRVGIIYSFNDDVVNCAR----------------------- 292 (428)
T ss_dssp CCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCG----GGCEEEEEESCHHHHHHHH-----------------------
T ss_pred ccCHHHhccccccccCCCCcEEEEecchhhcCCC----CceEEEEEeCCHHHHHHHH-----------------------
Confidence 0 1 11 2378 788887 777532 223589988 566655441
Q ss_pred cccccccccCCCccchhHHHHHHHHHHHHHhCc-----chHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEec
Q 001989 408 EQHIRRDKATSNICTAQALLANMAAMYAVYHGP-----EGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKC 482 (985)
Q Consensus 408 e~~irre~atsni~t~~~l~a~~aa~~l~~~g~-----~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 482 (985)
+...+.+ .+... ..++. ..+.. +.++++.++..++.+++.+.|+++| +++.......-+.+++
T Consensus 293 -----~~~~~~~--~~~~~--~~a~~--~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~ 360 (428)
T 1iay_A 293 -----KMSSFGL--VSTQT--QYFLA--AMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVG-IKCLKNNAGLFCWMDL 360 (428)
T ss_dssp -----HHHTTSC--CCHHH--HHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCBCCCSSSSEEEEEC
T ss_pred -----HHHhccc--CCHHH--HHHHH--HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccCCCeeEEEEEec
Confidence 0000001 11111 11111 12221 2467788888999999999999986 7765321111233444
Q ss_pred CC---------HHHHHHHHHHc-Cceeeeec------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 483 AD---------AHAIASAAYKI-EMNLRVVD------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 ~~---------~~~v~~~L~~~-GI~~~~~~------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++ ..++.+.|.++ ||.+.... ++.+|++++ .+|++|+++++++|.+
T Consensus 361 ~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~e~i~~~~~~l~~ 422 (428)
T 1iay_A 361 RPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRR 422 (428)
T ss_dssp GGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHH
T ss_pred hhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-cCCHHHHHHHHHHHHH
Confidence 31 45788999876 99886431 468999998 6899999999999873
No 369
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.61 E-value=3.4e-15 Score=172.17 Aligned_cols=269 Identities=10% Similarity=0.032 Sum_probs=167.6
Q ss_pred cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEcC-CC-CCCCCHHHHHHHHHhcCCCE
Q 001989 654 PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT-DA-KGNINIEELRKAAEANRDNL 731 (985)
Q Consensus 654 ~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~-d~-~g~iD~e~L~~~i~~~~~~t 731 (985)
+++|++|+..+...++.+ .++++|+++.+.|..+...++..|++++.+|. ++ ++.+|+++|++++++.++.+
T Consensus 104 t~g~~~a~~~~~~~~~~~------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~ 177 (412)
T 1yaa_A 104 SLSGTGALHISAKFFSKF------FPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGS 177 (412)
T ss_dssp EEHHHHHHHHHHHHHHHH------CTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTC
T ss_pred ccchHhHHHHHHHHHHHh------CCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHhCCCCC
Confidence 556666665443223322 36788999888888887778889999999998 43 57899999999997432245
Q ss_pred EEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEccccc-cccC-------CCCCCccCC----cEEEeCCccccc
Q 001989 732 STLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMN-AQVG-------LTSPGYIGA----DVCHLNLHKTFC 796 (985)
Q Consensus 732 ~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~-~~~~-------l~~pg~~g~----Di~~~s~hK~l~ 796 (985)
+++++++|+ ++|.+. .++++|+++|+++|+++++|+++.. ..++ +......+. ++++.|++|+|+
T Consensus 178 ~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 257 (412)
T 1yaa_A 178 IFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAG 257 (412)
T ss_dssp EEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSC
T ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCC
Confidence 666668884 699885 1577899999999999999998731 1111 000011233 477889999885
Q ss_pred ccCCCCCCceEEEE--E-----ccc----ccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc-
Q 001989 797 IPHGGGGPGMGPIG--V-----KKH----LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG- 864 (985)
Q Consensus 797 ~p~g~GGPg~G~i~--~-----~~~----l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg- 864 (985)
. .|.++|+++ + +++ +...+.... + ..+.+. + .....++.++|....
T Consensus 258 ~----~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~-----------~-~~~~~~--~----~~~~~a~~~~l~~~~~ 315 (412)
T 1yaa_A 258 M----YGERVGCFHLALTKQAQNKTIKPAVTSQLAKII-----------R-SEVSNP--P----AYGAKIVAKLLETPEL 315 (412)
T ss_dssp C----GGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHH-----------H-TTTSSC--C----HHHHHHHHHHHHSHHH
T ss_pred C----cCCcceEEEEEecCCCCCHHHHHHHHHHHHHHH-----------h-hccCCC--C----hHHHHHHHHHhCCHHH
Confidence 2 245689998 6 444 443322100 0 001111 1 111222223333221
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHhhc-c----CCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccC
Q 001989 865 ----SKGLTEASKIAILNANYMAKRLEK-H----YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP 935 (985)
Q Consensus 865 ----~eGl~~~~~~~~~~a~~l~~~L~~-g----~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~ 935 (985)
.+.+.+..++..++++++.+.|++ + +.+. . +.+..+ +.+ +.+...+.+.|.++||.+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~-~~~~~~--~~~---------~~~~~~~~~~l~~~gi~v~ 382 (412)
T 1yaa_A 316 TEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHI-V-NQCGMF--SFT---------GLTPQMVKRLEETHAVYLV 382 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHH-H-HCCSSE--EEC---------CCCHHHHHHHHHHHCEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeee-c-cCceEE--Eee---------CCCHHHHHHHHHhCCEEec
Confidence 235666777788889999999986 3 3332 1 112222 111 2345667555667899875
Q ss_pred CCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 936 TMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 936 ~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
. .+||+++. .+++|+++ +++.|+++++.
T Consensus 383 ~-------~~Ris~~~-~~~~~i~~--~~~~l~~~~~~ 410 (412)
T 1yaa_A 383 A-------SGRASIAG-LNQGNVEY--VAKAIDEVVRF 410 (412)
T ss_dssp T-------TSEEEGGG-CCTTTHHH--HHHHHHHHHHH
T ss_pred c-------CcEEEEcc-CCHhHHHH--HHHHHHHHHHh
Confidence 3 57999974 58999999 77888887764
No 370
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.61 E-value=1.9e-13 Score=156.39 Aligned_cols=305 Identities=13% Similarity=0.047 Sum_probs=192.1
Q ss_pred CCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCC---CCc-ceeeccchHHHHHHHHHHh
Q 001989 173 MGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGL---PMS-NASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 173 ~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~---~~~-~~sl~~~~ta~~ea~~~a~ 248 (985)
.|..+...|+.+.+++.+...-...|.+. +|..+...++.+.+.+..|. ++. ++.+++|++.+++.++.++
T Consensus 37 ~~~~~~~~~~~v~~a~~~~~~~~~~y~~~-----~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~ 111 (396)
T 3jtx_A 37 IGEPKHPTPKVITDALTASLHELEKYPLT-----AGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTV 111 (396)
T ss_dssp CCSCCSCCCHHHHHHHHHTGGGGGSCCCT-----TCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHH
T ss_pred CcCCCCCCCHHHHHHHHHHhhhccCCCCC-----CCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHH
Confidence 34334446777765665543334455432 22223333344455555574 466 8999999998888777654
Q ss_pred hhhcCCC-----CEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---------hhhhc-cCCCEeEEEEEcC-CCCeee
Q 001989 249 NIQKGKK-----KTFIIASNCHPQTIDICITRADGFDIKVVVSDL---------KDIDY-KSGDVCGVLVQYP-GTEGEV 312 (985)
Q Consensus 249 ~~~~~~g-----~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~---------~~l~~-l~~~t~~V~v~~p-n~~G~v 312 (985)
. ++| |+|+++...|+.+...++. .|.+++.++. ++|++ +.+++++|++++| |.+|.+
T Consensus 112 ~---~~g~~~~~d~vl~~~p~~~~~~~~~~~----~g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~nptG~~ 184 (396)
T 3jtx_A 112 L---NPVSDGIKPAIVSPNPFYQIYEGATLL----GGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVCSPNNPSGSV 184 (396)
T ss_dssp C---CC---CCCCEEEEEESCCHHHHHHHHH----TTCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEEESSCTTTCCC
T ss_pred h---CCCCccCCCEEEEcCCCcHhHHHHHHH----cCCEEEEeecCCCCCccCHHHHHHhhccCcEEEEEECCCCCCCCc
Confidence 2 254 7999999999998887653 5778877754 34444 5568999999998 789998
Q ss_pred cc---HHHHHHHHHhCCcEEEEEecCccccCCC--CC-C----------cccceEEEecC-ccccccCCCCCCcEEEEEE
Q 001989 313 LD---YGDFIKNAHANGVKVVMATDLLALTILK--PP-G----------ELGADIVVGSA-QRFGVPMGYGGPHAAFLAT 375 (985)
Q Consensus 313 ~d---i~~I~~~a~~~galliV~a~~~~lg~l~--~~-~----------~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~ 375 (985)
.+ +++|+++|+++|+++++|. ..+..... .+ . +.+.++++.|. |.|+.| |-.+|++..
T Consensus 185 ~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~ 259 (396)
T 3jtx_A 185 LDLDGWKEVFDLQDKYGFIIASDE-CYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVP----GLRSGFVAG 259 (396)
T ss_dssp CCHHHHHHHHHHHHHHCCEEEEEC-TTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCG----GGCCEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEc-cccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCc----ccceEEEEe
Confidence 75 4559999999999999953 33321111 11 1 36788999987 767543 334689988
Q ss_pred chhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Q 001989 376 SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAG 455 (985)
Q Consensus 376 ~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~ 455 (985)
++++++.+... .+ ....+.|. ....+..++ +. ..+.++++.++..++.+
T Consensus 260 ~~~~~~~~~~~----------------------~~--~~~~~~~~---~~~~a~~~~--l~--~~~~~~~~~~~~~~~~~ 308 (396)
T 3jtx_A 260 DAELLKNFLLY----------------------RT--YHGSAMSI---PVQRASIAA--WD--DEQHVIDNRRLYQEKFE 308 (396)
T ss_dssp CHHHHHHHHHH----------------------HH--HHTCCCCH---HHHHHHHHH--HH--CCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH----------------------Hh--hcccCCCH---HHHHHHHHH--hC--CHHHHHHHHHHHHHHHH
Confidence 88877655100 00 00011111 112222222 12 35677888899999999
Q ss_pred HHHHHHhcCCCeEEcCCCCcceEEEecCC--HHHHHHHHH-HcCceeeee------------cCCeEEEEeccCCCHHHH
Q 001989 456 TFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAY-KIEMNLRVV------------DSNTVTASFDETTTLEDV 520 (985)
Q Consensus 456 ~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--~~~v~~~L~-~~GI~~~~~------------~~~~lris~t~~~t~edI 520 (985)
++.+.|++. +.+.......-+.+.++. ..++.++|. ++||.+... ..+.+|++++. ++++|
T Consensus 309 ~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~--~~~~i 384 (396)
T 3jtx_A 309 RVIPILQQV--FDVKLPDASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA--DVATC 384 (396)
T ss_dssp HHHHHHTTT--SCCCCCSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS--CHHHH
T ss_pred HHHHHHHhc--CCccCCCeeEEEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC--CHHHH
Confidence 999999875 222221111123455553 788888885 569987431 24789999875 99999
Q ss_pred HHHHHHHhC
Q 001989 521 DKLFIVFAG 529 (985)
Q Consensus 521 d~li~aL~~ 529 (985)
+++++.|.+
T Consensus 385 ~~~l~~l~~ 393 (396)
T 3jtx_A 385 VKAAEDIVS 393 (396)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998863
No 371
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.61 E-value=7e-14 Score=160.19 Aligned_cols=272 Identities=13% Similarity=0.133 Sum_probs=175.9
Q ss_pred HHHHHHHHhcC--CCCcceeeccchHHHHHHHHHHhhhhcCCC-CEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 215 NFQTMIADLTG--LPMSNASLLDEGTAAAEAMAMCNNIQKGKK-KTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 215 e~q~~ia~L~g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g-~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
++.+.+.+..| .++.++.+++|+|.+++.++.++ . ++| |+|+++...|+.+...++. .|.+++.++.
T Consensus 84 ~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l-~--~~g~d~vl~~~p~~~~~~~~~~~----~g~~~~~v~~~~~ 156 (398)
T 3ele_A 84 AIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRAL-T--SDAYDEFITIAPYFPEYKVFVNA----AGARLVEVPADTE 156 (398)
T ss_dssp HHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHH-C--CSTTCEEEEESSCCTHHHHHHHH----TTCEEEEECCCTT
T ss_pred HHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHH-c--CCCCCEEEEeCCCchhhHHHHHH----cCCEEEEEecCCc
Confidence 33344555556 56778999999998887776654 2 378 9999999999998887753 5888888764
Q ss_pred ------hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHh------CCcEEEEEecCccccCC----CC--CC
Q 001989 289 ------KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHA------NGVKVVMATDLLALTIL----KP--PG 345 (985)
Q Consensus 289 ------~~l~~-l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~------~galliV~a~~~~lg~l----~~--~~ 345 (985)
++|++ +++++++|++++| |.+|.+.+ +++|+++|++ +|+++++|. ..+.... .+ ..
T Consensus 157 ~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~ 235 (398)
T 3ele_A 157 HFQIDFDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADE-PYREIVYDGIKVPFVTK 235 (398)
T ss_dssp TSSCCHHHHHHTCCTTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEEC-TTTTCBCTTCCCCCGGG
T ss_pred CCcCCHHHHHHHhCcCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEec-cccccccCCCCcCChHh
Confidence 34555 7788999999888 78999877 7778899999 999999953 3332111 11 13
Q ss_pred cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchh
Q 001989 346 ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQ 424 (985)
Q Consensus 346 ~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~ 424 (985)
.++.+++++|. |.|+. .|..+|++++++++.+... +.. .-+...+..++ .+.+
T Consensus 236 ~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~--~~~-----------------~~~~~~~~~~~--~~~~- 289 (398)
T 3ele_A 236 YYDNTLVCYSYSKSLSL----PGERIGYVLVPDEVYDKAE--LYA-----------------AVCGAGRALGY--VCAP- 289 (398)
T ss_dssp TCSSEEEEEESTTTSSC----TTTCCEEEECCTTSTTHHH--HHH-----------------HHHHHHHHTTC--CCSC-
T ss_pred hcCCeEEEEehhhcCCC----ccceeEEEEEcchhhhHHH--HHH-----------------HHHHHhhhccc--cCCC-
Confidence 45678999887 87753 3445799988776432110 000 00000011111 1111
Q ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC--HHHHHHHHHHcCceeeee
Q 001989 425 ALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVV 502 (985)
Q Consensus 425 ~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--~~~v~~~L~~~GI~~~~~ 502 (985)
.+ +..++. ..+.... ..++..++.+++.+.|+++| +++..+....-+.+..++ +.++.+.|.++||.+...
T Consensus 290 ~~-~~~a~~--~~l~~~~---~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g 362 (398)
T 3ele_A 290 SL-FQKMIV--KCQGATG---DINAYKENRDLLYEGLTRIG-YHCFKPDGAFYMFVKALEDDSNAFCEKAKEEDVLIVAA 362 (398)
T ss_dssp HH-HHHHHT--TCTTCCC---CHHHHHHHHHHHHHHHHHHT-CCEECCSBSSEEEEECSSSCHHHHHHHHHTTTEECEES
T ss_pred HH-HHHHHH--HHhcCHH---HHHHHHHHHHHHHHHHHHcC-CeecCCCeeEEEEEEcCCCCHHHHHHHHHHCCEEEeCc
Confidence 11 111211 1222211 34566778889999998886 776532211123455553 888999999999988653
Q ss_pred c----CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 D----SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ~----~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. ++.+|++++ +++++|+++++.|.+
T Consensus 363 ~~~~~~~~iRis~~--~~~e~i~~~l~~l~~ 391 (398)
T 3ele_A 363 DGFGCPGWVRISYC--VDREMIKHSMPAFEK 391 (398)
T ss_dssp GGGTCTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred cccCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 1 589999996 799999999999874
No 372
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.60 E-value=6.2e-14 Score=161.71 Aligned_cols=275 Identities=9% Similarity=0.041 Sum_probs=179.2
Q ss_pred HHHHHHHHhcC------------CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeE
Q 001989 215 NFQTMIADLTG------------LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIK 282 (985)
Q Consensus 215 e~q~~ia~L~g------------~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~ 282 (985)
++++.+|++++ .++.++.+++|+|.+++.++.++ . ++||+|+++...|+++...++. .|++
T Consensus 79 ~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l-~--~~gd~vl~~~p~y~~~~~~~~~----~g~~ 151 (416)
T 1bw0_A 79 EAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAI-C--DAGDYALVPQPGFPHYETVCKA----YGIG 151 (416)
T ss_dssp HHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHH-C--CTTCEEEEEESCCTHHHHHHHH----TTCE
T ss_pred HHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHh-C--CCCCEEEEcCCCcHhHHHHHHH----cCcE
Confidence 46677888877 66778999999998887776654 2 3789999999999998887653 5777
Q ss_pred EEEeCc----------hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccc----cC---
Q 001989 283 VVVSDL----------KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLAL----TI--- 340 (985)
Q Consensus 283 v~~v~~----------~~l~~-l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~l----g~--- 340 (985)
++.++. ++|++ +++++++|++.+| |.+|.+.| +++|+++|+++|+++++|. ..+. |-
T Consensus 152 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~g~~~~ 230 (416)
T 1bw0_A 152 MHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDE-IYAGMVFKGKDPN 230 (416)
T ss_dssp EEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEEC-TTTTCBCCSSCTT
T ss_pred EEEeecCcccCCCCCHHHHHHHhccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEc-cccccccCCCCCC
Confidence 766543 34555 7788999999988 67999988 9999999999999999953 2222 11
Q ss_pred --CCCCCcc---cceEEEecC-ccccccCCCCCCcEEEEEEchh--hHhcCCCceeeeeecCCCCcceeeeccccccccc
Q 001989 341 --LKPPGEL---GADIVVGSA-QRFGVPMGYGGPHAAFLATSQE--YKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIR 412 (985)
Q Consensus 341 --l~~~~~~---GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~--~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~ir 412 (985)
..+...+ +-+++++|. |.|+.| |-.+|+++++++ +.+.+-.. + + ...
T Consensus 231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~----Glr~G~~~~~~~~~~~~~~~~~-----------------~--~--~~~ 285 (416)
T 1bw0_A 231 ATFTSVADFETTVPRVILGGTAKNLVVP----GWRLGWLLYVDPHGNGPSFLEG-----------------L--K--RVG 285 (416)
T ss_dssp CCCCCTTSSCCSCCEEEEEESTTTTSCG----GGCCEEEEEECTTCSCHHHHHH-----------------H--H--HHH
T ss_pred CCccCHHHccCCCcEEEEecchhhCCCC----CceEEEEEeeCchhhHHHHHHH-----------------H--H--HHh
Confidence 1111222 235777776 776532 223688887653 32221000 0 0 000
Q ss_pred ccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecC--------C
Q 001989 413 RDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA--------D 484 (985)
Q Consensus 413 re~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~--------~ 484 (985)
....+.|. ....++.+ .+.....++++++.++..++.+++.+.|+++.++++..+....-+.+..+ +
T Consensus 286 ~~~~~~~~---~~~~a~~~--~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (416)
T 1bw0_A 286 MLVCGPCT---VVQAALGE--ALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKT 360 (416)
T ss_dssp HHHTCSCH---HHHHHHHH--HHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSSCCS
T ss_pred ccccCCCc---HHHHHHHH--HHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCHHHcCCCCC
Confidence 00111111 12222222 23434466788999999999999999999983388763221112223332 2
Q ss_pred HHHHHHHHH-HcCceeeee----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 485 AHAIASAAY-KIEMNLRVV----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 ~~~v~~~L~-~~GI~~~~~----~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..++.+.|. ++||.+... .++.+|++++ +++++|++.++.|.+
T Consensus 361 ~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~--~~~e~l~~~l~~l~~ 408 (416)
T 1bw0_A 361 DVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTT--RPVEVYREAVERIKA 408 (416)
T ss_dssp HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCEEEecccccCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 778888884 789988643 1578999995 689999999988863
No 373
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.60 E-value=5.7e-14 Score=163.92 Aligned_cols=278 Identities=14% Similarity=0.119 Sum_probs=178.9
Q ss_pred HHHHHHHHHhc----CCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeE-------
Q 001989 214 LNFQTMIADLT----GLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIK------- 282 (985)
Q Consensus 214 ~e~q~~ia~L~----g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~------- 282 (985)
.++++.+|+++ +.++.++.+++|++++++.+ .++ . ++||+|+++...|+++...++.. |.+
T Consensus 114 ~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~-~~l-~--~~gd~Vl~~~p~~~~~~~~~~~~----g~~g~~~~~~ 185 (449)
T 3qgu_A 114 GALREAVASTFYGHAGRAADEIFISDGSKCDIARI-QMM-F--GSKPTVAVQDPSYPVYVDTSVMM----GMTGDHNGTG 185 (449)
T ss_dssp HHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-HHH-H--CSSSCEEEEESCCTHHHHHHHHH----TCSCCBCSSS
T ss_pred HHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHH-HHH-h--CCCCEEEEcCCCChhHHHHHHHc----CCcccccccc
Confidence 45677888887 67778899999999888776 443 2 38899999999999999887653 433
Q ss_pred ---EEEeCch---hhhc-cC--CCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCC-----C-
Q 001989 283 ---VVVSDLK---DIDY-KS--GDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK-----P- 343 (985)
Q Consensus 283 ---v~~v~~~---~l~~-l~--~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~-----~- 343 (985)
++.++.+ .+.. +. +++++|++++| |.+|.+. ++++|+++|+++|+++++|. ..+..... .
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~De-a~~~~~~~~~~~~~~ 264 (449)
T 3qgu_A 186 FDGIEYMVCNPDNHFFPDLSKAKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDA-AYALYISNPDCPKTI 264 (449)
T ss_dssp BTTEEEEECCGGGTTCCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC-TTGGGCCCTTSCSSG
T ss_pred cceeEEEecccccCCcCChhHcCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEc-chHhhhcCCCCCCCH
Confidence 5555442 2222 21 57899999988 7799886 48889999999999999953 33321111 1
Q ss_pred ---CCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 344 ---PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 344 ---~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
+...+.|++++|. |.|+. +|..+|++++++++++.. ... + +.+-.+....+.+
T Consensus 265 ~~~~~~~~~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~~------------~~~-----~--~~~~~~~~~~~~~ 321 (449)
T 3qgu_A 265 YEIPGADEVAIETCSFSKYAGF----TGVRLGWTVVPKALKYAN------------GEP-----V--HADWNRVMTTCFN 321 (449)
T ss_dssp GGSTTGGGTEEEEEECSGGGTC----TTCCCEEEECCTTCBCTT------------SCB-----H--HHHHHHHHHHSCC
T ss_pred hhccCCCCcEEEEecchhhcCC----ccceeEEEecCHHHHhhh------------hhh-----H--HHHHHHHhhcccC
Confidence 1224678999997 88853 345679998877654320 000 0 0000001111111
Q ss_pred ccchhHHHHHHHHH-HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC--HHHHHHHHHHc-
Q 001989 420 ICTAQALLANMAAM-YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKI- 495 (985)
Q Consensus 420 i~t~~~l~a~~aa~-~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--~~~v~~~L~~~- 495 (985)
+. ...+..++. .+...+.+.++++.++..++.+++++.|+++| +++..+....-+.+.+++ ..++.+.|.++
T Consensus 322 -~~--~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 397 (449)
T 3qgu_A 322 -GA--SNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMG-FSVYGGDDAPYIWVGFPGKPSWDVFAEILERC 397 (449)
T ss_dssp -CC--CHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEESSSSSEEEEECTTSCHHHHHHHHHHHH
T ss_pred -CC--CHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCC-CeeeCCCCeeEEEEECCCCCHHHHHHHHHHHC
Confidence 11 111222222 11111224577888899999999999999987 776532212223445543 78888888875
Q ss_pred Cceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 496 EMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 496 GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
||.+... ..+.+|+++. .|++||+++++.|.+
T Consensus 398 gI~v~pg~~f~~~~~~~iRis~~--~~~e~i~~~l~~l~~ 435 (449)
T 3qgu_A 398 NIVTTPGSGYGPAGEGFVRASAF--GSRENILEAVRRFKE 435 (449)
T ss_dssp CEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred CEEEecchHhCCCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 9987542 2588999954 599999999998874
No 374
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.60 E-value=2.1e-14 Score=168.58 Aligned_cols=285 Identities=10% Similarity=0.030 Sum_probs=166.7
Q ss_pred HHHHHHHHhcCCCCcc--ee-eccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHH--------HHHHhhcCCCeEE
Q 001989 215 NFQTMIADLTGLPMSN--AS-LLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTID--------ICITRADGFDIKV 283 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~--~s-l~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~--------~~~~~a~~~gi~v 283 (985)
++++.+++++|++.+. +. +..+||.+..++++++ . ++||+|++++..|.+... .+. ++ +..+++
T Consensus 104 ~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al-~--~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~-~~-g~~~~~ 178 (490)
T 2a7v_A 104 LCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL-L--QPHDRIMGLDLPDGGHLTHGYMSDVKRIS-AT-SIFFES 178 (490)
T ss_dssp HHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH-C--CSCEECCC-------------------------------
T ss_pred HHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHH-c--CCCCEecccCccccccccchhhhcchhHH-Hc-CCeEEE
Confidence 4569999999999752 22 3347888877777765 2 389999999988865432 111 11 112222
Q ss_pred EE---------eCchhhhc-cC-CCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCcccc-----CCCCCCcc
Q 001989 284 VV---------SDLKDIDY-KS-GDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALT-----ILKPPGEL 347 (985)
Q Consensus 284 ~~---------v~~~~l~~-l~-~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg-----~l~~~~~~ 347 (985)
+. +|+++|++ +. .++++|++..|+ +|.+.|+++|+++||++|++++||. .+..| ....+-.
T Consensus 179 ~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~s~-~~~~~dl~~i~~ia~~~g~~livD~-Ah~~glv~~g~~~~~~~- 255 (490)
T 2a7v_A 179 MPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSA-YARLIDYARMREVCDEVKAHLLADM-AHISGLVAAKVIPSPFK- 255 (490)
T ss_dssp --CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSS-CCSCCCHHHHHHHHHHTTCEEEEEC-GGGHHHHHTTSSCCGGG-
T ss_pred EecccccccCCcCHHHHHHHHhhcCCcEEEEcCCC-CCCcccHHHHHHHHHHcCCEEEEcc-ccccccccCCcCCCCCC-
Confidence 22 34456766 53 357777766554 4677899999999999999999953 33323 2222322
Q ss_pred cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccc--cccCCCccchh
Q 001989 348 GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR--DKATSNICTAQ 424 (985)
Q Consensus 348 GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irr--e~atsni~t~~ 424 (985)
++|++++|+ |+|++ |..|++++++++.+.-+. .|...+. .+ .+.+++ ..++..-..+.
T Consensus 256 ~aDiv~~S~hK~l~G------p~GG~i~~~~~~~~~~~~---------~~~~~~~-~l---~~~i~~~~~~g~qggp~~~ 316 (490)
T 2a7v_A 256 HADIVTTTTHKTLRG------ARSGLIFYRKGVKAVDPK---------TGREIPY-TF---EDRINFAVFPSLQGGPHNH 316 (490)
T ss_dssp TCSEEEEESSGGGCS------CSCEEEEEECSEEEEETT---------TEEEEEC-CC---HHHHHHHHTTTTCCSCCHH
T ss_pred CCCEEEECCcccCcc------ccchheeeccchhccccc---------ccchhhH-HH---HHHHHHHhcccCCCCchHH
Confidence 799999998 76754 445899887653210000 0000000 11 111111 11221111223
Q ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC-CCCcceEEEecC--C--HHHHHHHHHHcCcee
Q 001989 425 ALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG-LPFFDTVKVKCA--D--AHAIASAAYKIEMNL 499 (985)
Q Consensus 425 ~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~--~--~~~v~~~L~~~GI~~ 499 (985)
.+.++.+++ .....+++++..++..+++++|++.|.+.| ++++. ....+.+.+.+. + +.++.+.|.++||.+
T Consensus 317 ~iaAla~Al--~~~~~~~~~~~~~~~~~na~~L~~~L~~~G-~~v~~~~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v 393 (490)
T 2a7v_A 317 AIAAVAVAL--KQACTPMFREYSLQVLKNARAMADALLERG-YSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITA 393 (490)
T ss_dssp HHHHHHHHH--HHHHSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEEC
T ss_pred HHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHHHcC-cEEecCCCCCeEEEEEeCCCCCCHHHHHHHHHhCCeEE
Confidence 444444443 222234568888999999999999999997 99874 222233445543 3 778999999999987
Q ss_pred ee---------ecCCeEEEEecc----CCCHHHHHHHHHHHhC
Q 001989 500 RV---------VDSNTVTASFDE----TTTLEDVDKLFIVFAG 529 (985)
Q Consensus 500 ~~---------~~~~~lris~t~----~~t~edId~li~aL~~ 529 (985)
.. ..++.+|++... ..+++|+++++++|..
T Consensus 394 ~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~ 436 (490)
T 2a7v_A 394 NKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDE 436 (490)
T ss_dssp EEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHH
Confidence 53 125789997754 4689999999999874
No 375
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.60 E-value=4.6e-15 Score=170.52 Aligned_cols=295 Identities=13% Similarity=0.072 Sum_probs=170.6
Q ss_pred HHHHHHHHHH--hC-CCccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE-EEEEcC
Q 001989 635 NNLGEWLCTI--TG-FDSFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK-IVSVGT 709 (985)
Q Consensus 635 ~e~~~~la~l--~G-~~~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~-vv~v~~ 709 (985)
.++++.++++ .| .+...+ +.++++++... + ++ .. .++++|+++.+.|..+...++..|++ ++.+|.
T Consensus 78 ~~lr~~la~~l~~g~~~~~~v~~~~G~~~al~~-~--~~-~~-----~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~ 148 (400)
T 3asa_A 78 PALRQKLSEDFYRGFVDAKEIFISDGAKVDLFR-L--LS-FF-----GPNQTVAIQDPSYPAYLDIARLTGAKEIIALPC 148 (400)
T ss_dssp HHHHHHHHHTTSTTSSCGGGEEEESCHHHHHHH-H--HH-HH-----CSSCEEEEEESCCHHHHHHHHHTTCSEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCHHHEEEccChHHHHHH-H--HH-Hc-----CCCCEEEECCCCcHHHHHHHHHcCCcceEeccc
Confidence 3677788887 57 555444 44555555532 2 22 21 36789999887776666667788998 999998
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEcccc-ccccCC--CCCCcc-
Q 001989 710 DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANM-NAQVGL--TSPGYI- 782 (985)
Q Consensus 710 d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~-~~~~~l--~~pg~~- 782 (985)
++++..+.+ +++ + +++++|++++|+ ++|.+.+ ++++|+++|+++|+++++|+++. ....+- .....+
T Consensus 149 ~~~~~~~~~-l~~-~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 222 (400)
T 3asa_A 149 LQENAFFPE-FPE-D----THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIP 222 (400)
T ss_dssp CGGGTTCCC-CCT-T----CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGST
T ss_pred chhcCcccC-hhh-c----cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCC
Confidence 654322221 221 1 467889999984 6898862 37789999999999999999985 221111 111122
Q ss_pred ---CCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHH
Q 001989 783 ---GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 783 ---g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~ 859 (985)
+.++++.|++|+|+. +|.++|++++++++..... ...... .........++. +.....++.++
T Consensus 223 ~~~~~~i~~~s~sK~~g~----~GlriG~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~------~~~~~~a~~~~ 288 (400)
T 3asa_A 223 DARFCAIEINSFSKPLGF----AGIRLGWTVIPQELTYADG-HFVIQD---WERFLSTTFNGA------SIPAQEAGVAG 288 (400)
T ss_dssp TGGGTEEEEEECCGGGTT----TTCCCEEEECCTTCBCTTS-CBHHHH---HHHHHHHHCCCC------CHHHHHHHHHH
T ss_pred CCCCceEEEecchhhcCC----cchheeEEeeChhhccchh-hhHHHH---HHHHhccCccCC------ChHHHHHHHHH
Confidence 234888999999854 3567899998877632110 000000 000000000011 11222222333
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEE-ecCccccCCCCHHHHHHHHHH-CCCccCC
Q 001989 860 IAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVD-LRGLKNTAGIEPEDVAKRLMD-YGFHGPT 936 (985)
Q Consensus 860 l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~-~~~~~~~~g~~~~~v~~~L~~-~Gi~~~~ 936 (985)
+... .+++..++..++++++.+.|++ ++.+. .+. +..+ +.++ ++ .+.+..++.++|.+ +||.+..
T Consensus 289 l~~~---~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~-~~~~--~~~~~~~-----~~~~~~~~~~~l~~~~gv~v~~ 356 (400)
T 3asa_A 289 LSIL---PQLEAIHYYRENSDLLRKALLATGFEVF-GGE-HAPY--LWVKPTQ-----ANISDRDLFDFFLREYHIAITP 356 (400)
T ss_dssp HHHT---TTCHHHHHHHHHHHHHHHHHHHTTCEEE-ECS-SSSE--EEEECCC-----TTCCTTTHHHHHHHHHSEECEE
T ss_pred hCcH---HHHHHHHHHHHHHHHHHHHHHHCCCeee-CCC-CceE--EEEeccC-----CCCCHHHHHHHHHHhCCEEEeC
Confidence 4322 3455566677888999999986 44432 221 2222 3455 43 13455678888875 5998753
Q ss_pred C-CCC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 937 M-SWP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 937 ~-~~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
. .+. ..+++||+. .++++||++ +++.|++++++.
T Consensus 357 g~~f~~~~~~~iRis~--~~~~e~i~~--~l~~l~~~~~~~ 393 (400)
T 3asa_A 357 GIGFGRSGSGFVRFSS--LGKREDILA--ACERLQMAPALQ 393 (400)
T ss_dssp GGGGCGGGTTCEEEEC--CSCHHHHHH--HHHHHHC-----
T ss_pred hhHhCCCCCCEEEEEe--eCCHHHHHH--HHHHHHHHHHhh
Confidence 2 221 247899994 688999999 778887777654
No 376
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.60 E-value=7.8e-15 Score=172.08 Aligned_cols=304 Identities=17% Similarity=0.172 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHH-HHhcCCCCC-CEEEEcCCCCccc-HHHHHHCCcEEEEE---
Q 001989 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY-HKARGDHHR-NVCIIPVSAHGTN-PATAAMCGMKIVSV--- 707 (985)
Q Consensus 634 ~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~-~~~~g~~~~-~~IIv~~~~Hg~~-~~~a~~~G~~vv~v--- 707 (985)
..++++++++++|.+.. +++++|++|++.++.+++.. ...+|. ++ |+|+++ ..|+.. .......|..++..
T Consensus 76 ~~~l~~~la~~~~~~~v-~~t~~gt~A~~~al~~~~~~~~~~~G~-~~~d~Ii~~-~~h~~t~~~~~~~~~~~~~~~~~~ 152 (467)
T 2oqx_A 76 YYALAESVKNIFGYQYT-IPTHQGRGAEQIYIPVLIKKREQEKGL-DRSKMVAFS-NYFFDTTQGHSQINGCTVRNVYIK 152 (467)
T ss_dssp HHHHHHHHHHHHCCSEE-EEEC--CCSHHHHHHHHHHHHHHHHCC-CTTTCEEEE-SSCCHHHHHHHHHTTCEEEECBCT
T ss_pred hHHHHHHHHHHhCcCcE-EEcCCcHHHHHHHHHHHhccccccCCC-CccceEEec-ccccccchhhhhccCcceeecccc
Confidence 34778899999988653 55667888887777766532 001131 12 677776 466432 22334566665543
Q ss_pred ---cCC----CCCCCCHHHHHHHHHhcC-CCEEEEEEEcCC-Cc-cccc--cCHHHHHHHHHHcCCEEEEEccccc----
Q 001989 708 ---GTD----AKGNINIEELRKAAEANR-DNLSTLMVTYPS-TH-GVYE--EGIDEICKIIHDNGGQVYMDGANMN---- 771 (985)
Q Consensus 708 ---~~d----~~g~iD~e~L~~~i~~~~-~~t~~Vvv~~pn-~~-G~i~--~di~eI~~la~~~galliVD~a~~~---- 771 (985)
+.+ .++.+|+++|+++|++++ ++|++|++++|+ ++ |.+. .++++|+++|+++|+++|+|++|..
T Consensus 153 ~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~ 232 (467)
T 2oqx_A 153 EAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAY 232 (467)
T ss_dssp TTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHH
T ss_pred ccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhh
Confidence 222 346789999999998432 378999999884 55 6552 2589999999999999999988753
Q ss_pred -------cccCCCCCCc------cCCcEEEeCCcccccccCCCCCCceEEEEEccc-ccC---cCCCCc-cccCCCCCCC
Q 001989 772 -------AQVGLTSPGY------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAP---FLPSHP-VVSTGGIPAP 833 (985)
Q Consensus 772 -------~~~~l~~pg~------~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~-l~~---~lp~~~-~g~~~~~~~~ 833 (985)
+..+. .+.. ..+|++++++||++++ |.+|+++++++ +++ .+.... .+...
T Consensus 233 ~~~~~~~~~~g~-~~~~~~~~~~~~~d~~~~s~sK~~g~------~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~----- 300 (467)
T 2oqx_A 233 FIKQREAEYKDW-TIEQITRETYKYADMLAMSAKKDAMV------PMGGLLCMKDDSFFDVYTECRTLCVVQEGF----- 300 (467)
T ss_dssp HHHHHCGGGTTS-CHHHHHHHHGGGCSEEEEESSSTTCC------SSCEEEEECSGGGHHHHHHHHHHHHHTTSS-----
T ss_pred hcccccccccCc-cHHHHhhhhhccCCeEEEecccccCC------CCceEEEecChhHHHHHHHHHHhhhccCCc-----
Confidence 12221 1112 2479999999999854 32367777755 322 111100 00000
Q ss_pred CCCCCCCCCCCcchhhhHHHHHHHHH-HHH-hcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEec
Q 001989 834 EKSQPLGTIAAAPWGSALILPISYTY-IAM-MGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLR 910 (985)
Q Consensus 834 ~~~~~~~~i~s~~~g~~~~~~~a~a~-l~~-lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~ 910 (985)
...+..+ .+ +..++.. +.. +.. +..++..++++++.+.|++ ++.+. +. +..+ +.++++
T Consensus 301 ---~~~~~~~-----~~--~~~al~~~l~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~-~~--~~~~--~~~~~~ 361 (467)
T 2oqx_A 301 ---PTYGGLE-----GG--AMERLAVGLYDGMNL----DWLAYRIAQVQYLVDGLEEIGVVCQ-QA--GGHA--AFVDAG 361 (467)
T ss_dssp ---CCCCCCC-----HH--HHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHHHTTCCEE-EE--CSSC--EEEEHH
T ss_pred ---ccccchh-----hh--HHHHHHHhhHhhhhH----HHHHHHHHHHHHHHHHHHHCCCeee-cC--CceE--EEEech
Confidence 0001111 11 1111111 111 111 1233446778889999976 45543 21 2222 334442
Q ss_pred CccccCCCC-----HHHHHHHH-HHCCCccCCCC---C---C--------CCCEEEEeccCC-CCHHHHHHHHccCChhH
Q 001989 911 GLKNTAGIE-----PEDVAKRL-MDYGFHGPTMS---W---P--------VPGTLMIEPTES-ESKSWTGIVMLSSPSEK 969 (985)
Q Consensus 911 ~~~~~~g~~-----~~~v~~~L-~~~Gi~~~~~~---~---p--------~~~~lris~t~~-~t~eeId~~~~~~~l~~ 969 (985)
.+. .+.+ ...++++| .++||.+.... + | ..+.+|++++.. +|++||++ +++.|++
T Consensus 362 ~~~--~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~--~~~~l~~ 437 (467)
T 2oqx_A 362 KLL--PHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDF--IIEAFKH 437 (467)
T ss_dssp HHS--TTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHH--HHHHHHH
T ss_pred hhc--ccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHHHH--HHHHHHH
Confidence 100 0122 45678888 88899864311 1 1 137999999998 99999999 8889999
Q ss_pred HHHhhc
Q 001989 970 KLHRLK 975 (985)
Q Consensus 970 ~~~~~~ 975 (985)
++++++
T Consensus 438 ~l~~~~ 443 (467)
T 2oqx_A 438 VKENAA 443 (467)
T ss_dssp HHHSGG
T ss_pred HHhhhh
Confidence 887655
No 377
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.60 E-value=2.8e-14 Score=160.28 Aligned_cols=272 Identities=16% Similarity=0.165 Sum_probs=169.5
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe------
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS------ 286 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v------ 286 (985)
..++++.+|+++|.+. +.++.+||.+...++.++ .++||+|++++..|++...... .++..|++++.+
T Consensus 40 ~~~l~~~la~~~g~~~--~~~~~~gt~a~~~~~~~~---~~~gd~Vl~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~ 113 (347)
T 1jg8_A 40 INELERLAAETFGKEA--ALFVPSGTMGNQVSIMAH---TQRGDEVILEADSHIFWYEVGA-MAVLSGVMPHPVPGKNGA 113 (347)
T ss_dssp HHHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHH---CCTTCEEEEETTCHHHHSSTTH-HHHHTCCEEEEECEETTE
T ss_pred HHHHHHHHHHHhCCce--EEEecCcHHHHHHHHHHh---cCCCCEEEEcCcchhhhccccc-hhhccCeEEEEecCCCCc
Confidence 3467899999999863 667788887666555443 2389999999999987553110 012346676655
Q ss_pred -Cchhhhc-cCC------CEeEEEEEcC-CCC-eeec---cHHHHHHHHHhCCcEEEEEe-cCc-cccCC-CCCCc--cc
Q 001989 287 -DLKDIDY-KSG------DVCGVLVQYP-GTE-GEVL---DYGDFIKNAHANGVKVVMAT-DLL-ALTIL-KPPGE--LG 348 (985)
Q Consensus 287 -~~~~l~~-l~~------~t~~V~v~~p-n~~-G~v~---di~~I~~~a~~~galliV~a-~~~-~lg~l-~~~~~--~G 348 (985)
|++++++ +++ +|++|++.+| |++ |.+. ++++|+++|+++|+++++|. +.. ++... .++.. .+
T Consensus 114 ~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~ 193 (347)
T 1jg8_A 114 MDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGY 193 (347)
T ss_dssp ECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHT
T ss_pred cCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhccc
Confidence 3355666 654 6999999988 678 9985 46899999999999999953 211 11111 11222 46
Q ss_pred ceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHH
Q 001989 349 ADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALL 427 (985)
Q Consensus 349 aDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~ 427 (985)
+|.++.+. |+|++| -.++++.++++++++.. + + +. ..++.+. .++.
T Consensus 194 ~d~~~~s~sK~l~~~------~G~~~~~~~~~~~~~~~--------------~------~-~~---~~~~~~~---~~~~ 240 (347)
T 1jg8_A 194 ADSVMFCLSKGLCAP------VGSVVVGDRDFIERARK--------------A------R-KM---LGGGMRQ---AGVL 240 (347)
T ss_dssp CSEEEEESSSTTCCS------SCEEEEECHHHHHHHHH--------------H------H-HH---HTCCCSS---THHH
T ss_pred ccEEEEecccccCCC------ceEEEEcCHHHHHHHHH--------------H------H-HH---cCCchhH---HHHH
Confidence 89888777 777543 22466777777654310 0 0 00 0001110 1121
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc-CCCCcceEEEecC--C--HHHHHHHHHHcCceeeee
Q 001989 428 ANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ-GLPFFDTVKVKCA--D--AHAIASAAYKIEMNLRVV 502 (985)
Q Consensus 428 a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~--~--~~~v~~~L~~~GI~~~~~ 502 (985)
+..+..-+..+ .+-++ +..++++++++.|+++| +++. .++..+-+.+..+ + ..++.++|.++||.++..
T Consensus 241 ~~~~~~~l~~~-~~~~~----~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~ 314 (347)
T 1jg8_A 241 AAAGIIALTKM-VDRLK----EDHENARFLALKLKEIG-YSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAV 314 (347)
T ss_dssp HHHHHHHHHHS-STTHH----HHHHHHHHHHHHHHHHT-CBCCGGGCCSSEEEEECTTSSSCHHHHHHHHHHHTEECEEE
T ss_pred HHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHhcC-ceeccCCCcceEEEEEcccccCCHHHHHHHHHHCCCEEecC
Confidence 11111111221 12222 23456788888888775 7652 2222233445554 3 788999999999988765
Q ss_pred cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 503 DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+.+|++++..+|++|+++++++|.+
T Consensus 315 ~~~~iRl~~~~~~~~e~i~~~~~~l~~ 341 (347)
T 1jg8_A 315 SDTEIRLVTHKDVSRNDIEEALNIFEK 341 (347)
T ss_dssp ETTEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999873
No 378
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.60 E-value=3.4e-14 Score=162.73 Aligned_cols=275 Identities=15% Similarity=0.102 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-hhcCCCCEEEEcCCCC-hhHHHHHHHhhcC---------C
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQKGKKKTFIIASNCH-PQTIDICITRADG---------F 279 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~~~~g~~Vlv~~~~H-~s~~~~~~~~a~~---------~ 279 (985)
+...++++.+++++|.+..++.+++|||.++++++.+.+ +. ++++||+.+..| ..+...+.. +.. .
T Consensus 87 ~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~--~~~~vi~~~~~y~~~~~~~~~~-~g~~~~~~~~~p~ 163 (395)
T 1vef_A 87 PMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHT--GRKKFVAAMRGFSGRTMGSLSV-TWEPKYREPFLPL 163 (395)
T ss_dssp HHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHH--SCCEEEEETTCCCCSSHHHHHT-CCCHHHHGGGCSC
T ss_pred HHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHh--CCCeEEEEcCCcCCCchhhhhh-cCCcccccccCCC
Confidence 345678899999998877789899999988887775432 23 678888777554 444444431 111 0
Q ss_pred CeEEEE---eCchhhhc-cCCCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecCcc-ccCCCCC-----
Q 001989 280 DIKVVV---SDLKDIDY-KSGDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLA-LTILKPP----- 344 (985)
Q Consensus 280 gi~v~~---v~~~~l~~-l~~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~~-lg~l~~~----- 344 (985)
..++.. .|+++|++ +++++++|++..+ |.+|.+.| +++|.++||++|+++++|. ..+ ++.....
T Consensus 164 ~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~De-a~~~~~~~g~~~~~~~ 242 (395)
T 1vef_A 164 VEPVEFIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDE-IQTGMGRTGKRFAFEH 242 (395)
T ss_dssp SSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEEC-TTTTTTTTSSSSTHHH
T ss_pred CCCeeEeCCCcHHHHHHHhccCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEe-cccCCccCCchhHhhh
Confidence 111333 35577777 8888998887654 56998887 9999999999999999953 333 3211111
Q ss_pred CcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchh
Q 001989 345 GELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQ 424 (985)
Q Consensus 345 ~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~ 424 (985)
...++|++.. +|+|++ |.++|++++++++++.+.. +.. ..|... +..
T Consensus 243 ~~~~~d~~s~-sK~~~~-----g~~~G~~~~~~~~~~~l~~----------~~~----------------~~~~~~-~~~ 289 (395)
T 1vef_A 243 FGIVPDILTL-AKALGG-----GVPLGVAVMREEVARSMPK----------GGH----------------GTTFGG-NPL 289 (395)
T ss_dssp HTCCCSEEEE-CGGGGT-----TSSCEEEEEEHHHHHTSCT----------TSS----------------CCSSTT-CHH
T ss_pred cCCCCCEEEE-cccccC-----CCceEEEEehHHHHhhhcc----------CCc----------------CCCcCC-CHH
Confidence 1235797733 588853 3457899999888776632 000 011111 111
Q ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC--CCCcceEEEecCC-HHHHHHHHH-HcCceee
Q 001989 425 ALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG--LPFFDTVKVKCAD-AHAIASAAY-KIEMNLR 500 (985)
Q Consensus 425 ~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~--~~~~~~~~~~~~~-~~~v~~~L~-~~GI~~~ 500 (985)
...+..+++ ..+.. +++.++..++.+++.+.|++++ ..++. .+...-+.+.++. ..++.+.|. ++||.+.
T Consensus 290 ~~~a~~~al--~~~~~---~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~~gi~v~ 363 (395)
T 1vef_A 290 AMAAGVAAI--RYLER---TRLWERAAELGPWFMEKLRAIP-SPKIREVRGMGLMVGLELKEKAAPYIARLEKEHRVLAL 363 (395)
T ss_dssp HHHHHHHHH--HHHHH---HTTHHHHHHHHHHHHHHHHTSC-CTTEEEEEEETTEEEEEESSCSHHHHHHHHHHHCEECE
T ss_pred HHHHHHHHH--HHHHh---CCHHHHHHHHHHHHHHHHHHhh-cCceEEEEEEEEEEEEEEcChHHHHHHHHHHHCCeEEe
Confidence 222222222 33322 3467778889999999999876 32110 1111234455554 778999999 8999887
Q ss_pred eecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 501 VVDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 501 ~~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
....+.+|++++..+|++|+++++++|.
T Consensus 364 ~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 391 (395)
T 1vef_A 364 QAGPTVIRFLPPLVIEKEDLERVVEAVR 391 (395)
T ss_dssp ESSTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6556899999999999999999999986
No 379
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.60 E-value=5e-14 Score=161.93 Aligned_cols=271 Identities=11% Similarity=0.056 Sum_probs=178.9
Q ss_pred HHHHHHHHhc----C--CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 215 NFQTMIADLT----G--LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 215 e~q~~ia~L~----g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
++++.+|+++ | .++.++.+++|+|.++++++.++. ++||+|+++...|+.+...++ ..|++++.++.
T Consensus 79 ~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~---~~gd~vl~~~p~~~~~~~~~~----~~g~~~~~v~~ 151 (407)
T 2zc0_A 79 ELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLI---DPGDVVITENPSYINTLLAFE----QLGAKIEGVPV 151 (407)
T ss_dssp HHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHC---CTTCEEEEEESCCHHHHHHHH----TTTCEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhc---CCCCEEEEeCCChHHHHHHHH----HcCCEEEEccc
Confidence 4556777776 8 456788899999988887776652 378999999999998887764 45778777643
Q ss_pred -------hhhhc-cC----C--CEeEEE-EEcC-CCCeeeccHH---HHHHHHHhCCcEEEEEecCccccCCC-----CC
Q 001989 289 -------KDIDY-KS----G--DVCGVL-VQYP-GTEGEVLDYG---DFIKNAHANGVKVVMATDLLALTILK-----PP 344 (985)
Q Consensus 289 -------~~l~~-l~----~--~t~~V~-v~~p-n~~G~v~di~---~I~~~a~~~galliV~a~~~~lg~l~-----~~ 344 (985)
++|++ ++ + ++++|+ +.+| |.+|.+.|++ +|+++|+++|+++++|. ..+.+... +.
T Consensus 152 ~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~ 230 (407)
T 2zc0_A 152 DNDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDT-AYNFMRYEGGDIVPL 230 (407)
T ss_dssp ETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC-TTTTSBSSCSSCCCG
T ss_pred CCCCCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEC-CCcccccCCCCCCCh
Confidence 45665 55 4 788875 5666 7799998876 99999999999999953 33332221 11
Q ss_pred Cc---ccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCc
Q 001989 345 GE---LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNI 420 (985)
Q Consensus 345 ~~---~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni 420 (985)
.. .+.+++++|. |.|+ | | -.+|++++++++.+.+.... . ..+.
T Consensus 231 ~~~~~~~~~i~~~s~sK~~~-~-G---~r~G~~~~~~~~~~~~~~~~--------------------------~--~~~~ 277 (407)
T 2zc0_A 231 KALDNEGRVIVAGTLSKVLG-T-G---FRIGWIIAEGEILKKVLMQK--------------------------Q--PIDF 277 (407)
T ss_dssp GGGCSSCCEEEEEESTTTTC-T-T---SCCEEEECCHHHHHHHHHHH--------------------------T--TTTS
T ss_pred hhcCCCCCEEEEcccccccC-C-C---cceEEEecCHHHHHHHHHHH--------------------------H--hhcC
Confidence 12 2556788886 8775 3 1 12689999887776541100 0 0011
Q ss_pred cchh-HHHHHHHHHHHHHh-Cc-chHHHHHHHHHHHHHHHHHHHhcC-CCeEEcCCCCcceEEEecCC---HHHHHHHHH
Q 001989 421 CTAQ-ALLANMAAMYAVYH-GP-EGLKTIAQRVHGLAGTFALGLKKL-GTVEVQGLPFFDTVKVKCAD---AHAIASAAY 493 (985)
Q Consensus 421 ~t~~-~l~a~~aa~~l~~~-g~-~Gl~~i~~~~~~~a~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~---~~~v~~~L~ 493 (985)
+++. ...+..++ +... -. +.++++.++..++.+++.+.|++. +++++..+....-+.+..+. ..++.+.|.
T Consensus 278 ~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 355 (407)
T 2zc0_A 278 CAPAISQYIALEY--LKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLPEGADGISFANELM 355 (407)
T ss_dssp SSCHHHHHHHHHH--HHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSBSSEEEEECSTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHH--HHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCCcEEEEEEcCCCCCHHHHHHHHH
Confidence 1111 12122121 2211 02 456677888888999999999874 33665432211234455542 788999999
Q ss_pred Hc-Cceeeee--------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 494 KI-EMNLRVV--------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 494 ~~-GI~~~~~--------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++ ||.+... ..+.+|++++.. |++||++++++|.+
T Consensus 356 ~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~ 399 (407)
T 2zc0_A 356 EREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIGIKKLAK 399 (407)
T ss_dssp HHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHHHHHHHH
T ss_pred HhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHH
Confidence 88 9987542 247899999877 89999999999874
No 380
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.59 E-value=3e-14 Score=164.74 Aligned_cols=218 Identities=17% Similarity=0.194 Sum_probs=152.9
Q ss_pred HHHHHHHHHHhcCCCCcceee---ccchHHHHHHHHHHhhhhcCCCCEEEEcC-CCChhHHHHH-------HHhhcCCCe
Q 001989 213 LLNFQTMIADLTGLPMSNASL---LDEGTAAAEAMAMCNNIQKGKKKTFIIAS-NCHPQTIDIC-------ITRADGFDI 281 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl---~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~-~~H~s~~~~~-------~~~a~~~gi 281 (985)
..++++.+|+++|.+.+ .+ +.+||+++.+++.++ + ++||+||+++ ..|+.....+ ...++..|+
T Consensus 76 ~~~Le~~lA~l~g~e~a--lv~p~~~sGt~A~~~al~al-l--~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~ 150 (427)
T 3hvy_A 76 RDSLDRVYANIFNTESA--FVRPHFVNGTHAIGAALFGN-L--RPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGV 150 (427)
T ss_dssp HHHHHHHHHHHHTCSEE--EEETTCCSHHHHHHHHHHHT-C--CTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTC
T ss_pred HHHHHHHHHHHhCCCce--EEeCCCCcHHHHHHHHHHHh-c--CCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCC
Confidence 45677899999999874 44 688888877776665 2 3899999998 8898877555 122345799
Q ss_pred EEEEeCc-------hhhhc-cC--CCEeEEEEEc----C-CCCeeeccHHHHHHHHHh--CCcEEEEEecCccccC-CCC
Q 001989 282 KVVVSDL-------KDIDY-KS--GDVCGVLVQY----P-GTEGEVLDYGDFIKNAHA--NGVKVVMATDLLALTI-LKP 343 (985)
Q Consensus 282 ~v~~v~~-------~~l~~-l~--~~t~~V~v~~----p-n~~G~v~di~~I~~~a~~--~galliV~a~~~~lg~-l~~ 343 (985)
+++.+|. +++++ ++ ++|++|++++ | |++|.+.|+++|+++||+ +|++++|| +.++.+. ...
T Consensus 151 ~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD-~a~~~~~~~~~ 229 (427)
T 3hvy_A 151 KYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVD-NCYGEFVEEKE 229 (427)
T ss_dssp EEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEE-CTTCTTTSSSC
T ss_pred EEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEE-CCccccccCCC
Confidence 9998865 45666 66 8899999998 7 789999999999999999 89999995 4555555 456
Q ss_pred CCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccc
Q 001989 344 PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT 422 (985)
Q Consensus 344 ~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t 422 (985)
|.++|+||+++|. |.|+++ |.|..|++++++++++++..+.. . + .+...-+.+.
T Consensus 230 p~~~gaDiv~~S~sK~lgg~---g~~~GG~i~~~~~li~~l~~~~~-----~---~-----------~~g~~~~~~~--- 284 (427)
T 3hvy_A 230 PTDVGADIIAGSLIKNIGGG---IATTGGYIAGKEEYVTQATFRVT-----V---P-----------GIGGECGSTF--- 284 (427)
T ss_dssp GGGGTCSEEEEETTSGGGTT---TCCSCEEEEECHHHHHHHHHHHS-----C---T-----------TTGGGCCCCT---
T ss_pred CcccCCeEEEECCccccccc---ccceEEEEEECHHHHHHHHHHhh-----c---C-----------CcccccCCCH---
Confidence 7789999999998 877642 33556999999988876521100 0 0 0000001000
Q ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc
Q 001989 423 AQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ 470 (985)
Q Consensus 423 ~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~ 470 (985)
...+. .+.|.+-+..+.++..+++.++++.|+++| +++.
T Consensus 285 -~~a~~-------~~~gl~~~~~r~~~~~~~a~~la~~L~~~g-~~V~ 323 (427)
T 3hvy_A 285 -GVMRS-------LYEGLFMAPHVTIEAVKGAVFCARIMELAG-FDVL 323 (427)
T ss_dssp -TCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CEEE
T ss_pred -HHHHH-------HHHhHhHHHHHHHHHHHHHHHHHHHHHhCC-Ceec
Confidence 00111 122222345677888899999999999998 7775
No 381
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.37 E-value=1e-16 Score=183.85 Aligned_cols=299 Identities=13% Similarity=0.090 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHHHhC--CCccc-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEEEc
Q 001989 632 EMFNNLGEWLCTITG--FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 632 ~~~~e~~~~la~l~G--~~~~~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~ 708 (985)
++.+++.+++.+.+| .+... ++.++|++++..++.++. .++++|+++.+.|..+...++..|.+++.+|
T Consensus 70 ~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~ 141 (392)
T 3b1d_A 70 ELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFT--------KEGEAVLINSPVYPPFARSVRLNNRKLVSNS 141 (392)
Confidence 344455555555666 33333 444555666654444332 3568899988777776666777899999998
Q ss_pred CC-CC--CCCCHHHHHHHHHhcCCCEEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEccccccc-cC--CCCC
Q 001989 709 TD-AK--GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VG--LTSP 779 (985)
Q Consensus 709 ~d-~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~--di~eI~~la~~~galliVD~a~~~~~-~~--l~~p 779 (985)
.+ .+ +.+|+++|++++++ +++++|++++|+ ++|.+.+ ++++|.++|+++|+++++|+++.... .+ ....
T Consensus 142 ~~~~~g~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~ 219 (392)
T 3b1d_A 142 LKEENGLFQIDFEQLENDIVE--NDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSF 219 (392)
Confidence 85 32 45899999999862 467888888884 6898751 49999999999999999999984211 11 0011
Q ss_pred C---c--cCCcEEEeCCcccccccCCCCCCceEEEEEcc-cccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHH
Q 001989 780 G---Y--IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 780 g---~--~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~-~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~ 853 (985)
. . .+.++++.|++|+|+. +|.++|++++++ ++.+.+..... ...+++. +....
T Consensus 220 ~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~~~-----------~~~~~~~------~~~~~ 278 (392)
T 3b1d_A 220 NTVSPDFKDFALVLSSATKTFNI----AGTKNSYAIIENPTLCAQFKHQQL-----------VNNHHEV------SSLGY 278 (392)
Confidence 0 1 3445778899999854 367889998864 46655432110 0000111 11112
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCeeecCCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCC
Q 001989 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYG 931 (985)
Q Consensus 854 ~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~G 931 (985)
.++.+.+.. +.+.+.+..++..++++++.+.|++ ...+....+.+.++ +.++++. .+.+..++.++|. ++|
T Consensus 279 ~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~i~~~~----~~~~~~~l~~~l~~~~g 351 (392)
T 3b1d_A 279 IATETAYRY-GKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQGTYL--IWLDFSD----YGLTDDALFTLLHDQAK 351 (392)
Confidence 222233332 2344556666677778888888865 22222212212211 1244431 1235678889996 789
Q ss_pred CccCCCC-CC--CCCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 932 FHGPTMS-WP--VPGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 932 i~~~~~~-~p--~~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
|.+.... +. .++++||+++. ++++|++ .++.|+++++
T Consensus 352 i~v~~g~~f~~~~~~~iRi~~~~--~~e~i~~--~l~~l~~~l~ 391 (392)
T 3b1d_A 352 VILNRGSDYGSEGELHARLNIAA--PKSLVEE--ICKRIVCCLP 391 (392)
Confidence 9875422 22 24689999765 5789999 7788877654
No 382
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.58 E-value=1.5e-14 Score=166.61 Aligned_cols=287 Identities=13% Similarity=0.072 Sum_probs=168.8
Q ss_pred HHHHHHHHHh-CCC-----ccce---ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEE
Q 001989 636 NLGEWLCTIT-GFD-----SFSL---QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVS 706 (985)
Q Consensus 636 e~~~~la~l~-G~~-----~~~~---~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~ 706 (985)
++++.+++++ |.+ ...+ ...+|+++...+..+++.+ ..++|+|+++++.|+.+...++..|++++.
T Consensus 83 ~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~-----~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~ 157 (409)
T 4eu1_A 83 SFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRF-----VANCNRIYGPDVGYPNHESIFAKAGMELTP 157 (409)
T ss_dssp HHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGT-----SSSCCEEEEESSCCTHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHh-----cCCCCEEEEeCCCcHhHHHHHHHcCCeEEE
Confidence 5566666654 654 2222 3456666654433333322 136789999999888888888899999999
Q ss_pred EcC--CCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccc-cccCC----
Q 001989 707 VGT--DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMN-AQVGL---- 776 (985)
Q Consensus 707 v~~--d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~-~~~~l---- 776 (985)
+|+ ++++.+|+++|++++++++++++++++++| |++|.+. .++++|+++|+++|+++++|+++.. ..++.
T Consensus 158 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~ 237 (409)
T 4eu1_A 158 YSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDA 237 (409)
T ss_dssp ECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHT
T ss_pred EEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccch
Confidence 998 345789999999999754456777777888 5789886 1366699999999999999998641 11110
Q ss_pred CC----CCccCCcEEEeCCcccccccCCCCCCceEEE--EE-ccc----ccCcCCCCccccCCCCCCCCCCCCCCCCCCc
Q 001989 777 TS----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPI--GV-KKH----LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAA 845 (985)
Q Consensus 777 ~~----pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i--~~-~~~----l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~ 845 (985)
.. .+...-.+++.|++|+|++| |.++|++ ++ +++ +...+.... + ..+.+.+
T Consensus 238 ~~~~~~~~~~~~~i~~~S~SK~~g~~----G~riG~~~~v~~~~~~~~~l~~~~~~~~-----------~-~~~~~~~-- 299 (409)
T 4eu1_A 238 FVPRHLVDMVPNLIVAQSFSKNFGLY----GHRCGALHISTASAEEAKRLVSQLALLI-----------R-PMYNNPP-- 299 (409)
T ss_dssp HHHHHHHTTSSCCEEEEECTTTSSCG----GGCCEEEEEECSSHHHHHHHHHHHHHHH-----------H-HHHSSCC--
T ss_pred HHHHHHHhhCCcEEEEecCcccccCc----cCCceEEEEEeCCHHHHHHHHHHHHHHH-----------h-hhcCCCC--
Confidence 00 01112236777888988643 5678996 44 444 333221100 0 0011111
Q ss_pred chhhhHHHHHHHHHHHHhc-----HHHHHHHHHHHHHHHHHHHHHhhc-cCC--eeecCCCCceeeEEEEEecCccccCC
Q 001989 846 PWGSALILPISYTYIAMMG-----SKGLTEASKIAILNANYMAKRLEK-HYP--ILFRGVNGTVAHEFIVDLRGLKNTAG 917 (985)
Q Consensus 846 ~~g~~~~~~~a~a~l~~lg-----~eGl~~~~~~~~~~a~~l~~~L~~-g~~--l~~~~~~~~~~~~~iv~~~~~~~~~g 917 (985)
.....++.+++.... .+.+++..++..++++++.+.|++ +.. +.+..+.+..+ .+ . +
T Consensus 300 ----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~---~~-~-------~ 364 (409)
T 4eu1_A 300 ----LYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIERQVGMM---AY-T-------G 364 (409)
T ss_dssp ----HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHSCSSE---EE-C-------C
T ss_pred ----hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCceEE---EE-e-------C
Confidence 111122222333110 233556666778888999999986 311 21111112222 11 1 2
Q ss_pred CCHHHHHHHHH-HCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHH
Q 001989 918 IEPEDVAKRLM-DYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKL 971 (985)
Q Consensus 918 ~~~~~v~~~L~-~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~ 971 (985)
.+.+ ++++|. ++||.+.. ..||++.. .+++||++ ++++|++++
T Consensus 365 ~~~~-~~~~ll~~~gv~v~p-------~~Ri~~~~-~~~~~i~~--~~~~l~~~l 408 (409)
T 4eu1_A 365 LTRE-QVELLRSEYHIYMTL-------NGRAAVSG-LNSTNVEY--VSQAIHNVT 408 (409)
T ss_dssp CCHH-HHHHHHHHHCEECCT-------TCEEEGGG-CCTTTHHH--HHHHHHHHH
T ss_pred CCHH-HHHHHHHcCCEEEcC-------CCEEEEEe-cCHhhHHH--HHHHHHHHh
Confidence 3444 455554 56998742 24788765 45677999 777777654
No 383
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.58 E-value=2.3e-14 Score=169.84 Aligned_cols=314 Identities=13% Similarity=0.101 Sum_probs=186.0
Q ss_pred hhHHHHHHHHHHHHHHHhC-CC--ccce-ecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcE
Q 001989 628 QGYQEMFNNLGEWLCTITG-FD--SFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~e~~~~la~l~G-~~--~~~~-~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~ 703 (985)
+|..++.+++.+++.+..| .+ ...+ ..+++++++..+ ++.+. ..|..++++|+++.+.|..+...++..|++
T Consensus 129 ~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~---~~~l~-~~gd~~~d~Vlv~~p~y~~~~~~~~~~g~~ 204 (498)
T 3ihj_A 129 QGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTI---LKILV-SGGGKSRTGVMIPIPQYPLYSAVISELDAI 204 (498)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHH---HHHHC-CCCGGGSEEEEEEESCCTHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHH---HHHHc-CCCCCCCCEEEEeCCCchhHHHHHHHcCCE
Confidence 4655666677777777764 53 3444 445555555333 33221 111002358999999888888888899999
Q ss_pred EEEEcCCCC--CCCCHHHHHHHHHhcCC--CEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccccC-
Q 001989 704 IVSVGTDAK--GNINIEELRKAAEANRD--NLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVG- 775 (985)
Q Consensus 704 vv~v~~d~~--g~iD~e~L~~~i~~~~~--~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~~~~~- 775 (985)
++.++++++ +.+|+++|++++++.+. ++++|++++| |++|.+. .++++|+++|+++|+++++|.++....-.
T Consensus 205 ~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~ 284 (498)
T 3ihj_A 205 QVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSP 284 (498)
T ss_dssp EEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCT
T ss_pred EEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCC
Confidence 999998754 57999999999984221 5899999999 5799884 25888999999999999999998421110
Q ss_pred ---CCCCCc----cC------Cc-EEEeCCcccc-cccCCCCCCceEEEEE---cccccCcCCCCccccCCCCCCCCCCC
Q 001989 776 ---LTSPGY----IG------AD-VCHLNLHKTF-CIPHGGGGPGMGPIGV---KKHLAPFLPSHPVVSTGGIPAPEKSQ 837 (985)
Q Consensus 776 ---l~~pg~----~g------~D-i~~~s~hK~l-~~p~g~GGPg~G~i~~---~~~l~~~lp~~~~g~~~~~~~~~~~~ 837 (985)
...... ++ .. +++.|++|+| +.| |.++|++++ ++++.+.+.... .
T Consensus 285 ~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~----G~R~G~~~~~~~~~~l~~~l~~~~-~------------ 347 (498)
T 3ihj_A 285 DCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGEC----GYRGGYMEVINLHPEIKGQLVKLL-S------------ 347 (498)
T ss_dssp TCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCS----SSCCEEEEEESCCHHHHHHHHHHH-H------------
T ss_pred CCCcCCHHHHHHHhcccccCceeEEEEeccccccccCc----ccceEEEEEecCCHHHHHHHHHHH-h------------
Confidence 000000 11 12 5677889998 333 678899984 555544332100 0
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHH----------HhcHHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceeeEEEE
Q 001989 838 PLGTIAAAPWGSALILPISYTYIA----------MMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIV 907 (985)
Q Consensus 838 ~~~~i~s~~~g~~~~~~~a~a~l~----------~lg~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~~~iv 907 (985)
...+++..++.+ +.+++. .+ .+.+.++.++..++++++.+.|++..++.+..+.+..+ +.+
T Consensus 348 --~~~~~~~~~q~a----~~~~l~~~~~g~~~~~~~-~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~~--~~~ 418 (498)
T 3ihj_A 348 --VRLCPPVSGQAA----MDIVVNPPVAGEESFEQF-SREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMY--AFP 418 (498)
T ss_dssp --HSCCCCHHHHHH----HHHHTCCCCTTSTTHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSE--ECC
T ss_pred --ccCCCCHHHHHH----HHHHhcCCccCcccHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEEE--EEE
Confidence 011222222221 111111 00 01123445567788899999998632443333333332 122
Q ss_pred EecCc-c-----ccCCCCHHHH--HHHHHHCCCccCCC-CC---CCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhc
Q 001989 908 DLRGL-K-----NTAGIEPEDV--AKRLMDYGFHGPTM-SW---PVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLK 975 (985)
Q Consensus 908 ~~~~~-~-----~~~g~~~~~v--~~~L~~~Gi~~~~~-~~---p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~ 975 (985)
++..- + ...+.+.+++ .+.|.++||.+... .| +..+++|+++. .+++++++ +++.|++++++++
T Consensus 419 ~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~--~~~e~l~~--~i~~L~~~~~~~~ 494 (498)
T 3ihj_A 419 RIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTIL--PPVEKLKT--VLQKVKDFHINFL 494 (498)
T ss_dssp EECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECC--SCHHHHHH--HHHHHHHHHHHHH
T ss_pred eccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeC--CCHHHHHH--HHHHHHHHHHHHH
Confidence 22200 0 0013455553 45566789986432 22 22468999994 78999999 7788888877654
No 384
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.58 E-value=6.1e-15 Score=168.81 Aligned_cols=284 Identities=8% Similarity=0.040 Sum_probs=173.5
Q ss_pred HHHHHHHHHh---CC---Cccc-ee--cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCCcEEEE
Q 001989 636 NLGEWLCTIT---GF---DSFS-LQ--PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVS 706 (985)
Q Consensus 636 e~~~~la~l~---G~---~~~~-~~--~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~ 706 (985)
++++.+++++ +. +... ++ .++|++|++.++.+++.+ .++++|+++.+.|..+...++..|++++.
T Consensus 73 ~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~------~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~ 146 (396)
T 2q7w_A 73 EFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKN------TSVKRVWVSNPSWPNHKSVFNSAGLEVRE 146 (396)
T ss_dssp HHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH------SCCCEEEEEESCCTHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHh------CCCCEEEEcCCCchhHHHHHHHcCCceEE
Confidence 5566666665 21 1222 33 677777776555544322 36789999888777777778889999999
Q ss_pred EcCC--CCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEcccccc-ccC---CC
Q 001989 707 VGTD--AKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNA-QVG---LT 777 (985)
Q Consensus 707 v~~d--~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~--~di~eI~~la~~~galliVD~a~~~~-~~~---l~ 777 (985)
+|.+ +++.+|+++|++++++.+++++++++++|+ ++|.+. .++++|+++|+++|+++++|+++... .++ ..
T Consensus 147 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~ 226 (396)
T 2q7w_A 147 YAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAE 226 (396)
T ss_dssp EECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTH
T ss_pred EecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhH
Confidence 9985 467899999999997433357888888884 689875 24778999999999999999987421 110 00
Q ss_pred CC---Ccc-CCcEEEeCCcccccccCCCCCCceEEEEE---cc----cccCcCCCCccccCCCCCCCCCCCCCCCCCCcc
Q 001989 778 SP---GYI-GADVCHLNLHKTFCIPHGGGGPGMGPIGV---KK----HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAP 846 (985)
Q Consensus 778 ~p---g~~-g~Di~~~s~hK~l~~p~g~GGPg~G~i~~---~~----~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~ 846 (985)
.. ... ..++++.|++|+|+.| |.++|++++ ++ ++...+.... + ..+.. . +
T Consensus 227 ~~~~~~~~~~~~i~~~s~sK~~~~~----G~riG~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~-~-~- 287 (396)
T 2q7w_A 227 GLRAFAAMHKELIVASSYSXNFGLY----NERVGACTLVAADSETVDRAFSQMKAAI-----------R-ANYSN-P-P- 287 (396)
T ss_dssp HHHHHHHHCSCEEEEEECTTTTTCG----GGCCEEEEEECSSHHHHHHHHHHHHHHH-----------H-TTTSS-C-C-
T ss_pred HHHHHHhcCCcEEEEEecccccccc----ccccceEEEEcCCHHHHHHHHHHHHHHH-----------h-hccCC-C-C-
Confidence 00 111 2357788999998542 556899986 44 2332221000 0 00111 1 1
Q ss_pred hhhhHHHHHHHHHHHHh-----cHHHHHHHHHHHHHHHHHHHHHhhc-c----CCeeecCCCCceeeEEEEEecCccccC
Q 001989 847 WGSALILPISYTYIAMM-----GSKGLTEASKIAILNANYMAKRLEK-H----YPILFRGVNGTVAHEFIVDLRGLKNTA 916 (985)
Q Consensus 847 ~g~~~~~~~a~a~l~~l-----g~eGl~~~~~~~~~~a~~l~~~L~~-g----~~l~~~~~~~~~~~~~iv~~~~~~~~~ 916 (985)
.....++.++|... -.+.+++..++..++++++.+.|++ + +.+. .+.+..+ +.+.
T Consensus 288 ---~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~~~~~~--~~~~-------- 352 (396)
T 2q7w_A 288 ---AHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFI--IKQNGMF--SFSG-------- 352 (396)
T ss_dssp ---HHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHH--HHCCSSE--EECC--------
T ss_pred ---cHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccee--cCCCceE--EEec--------
Confidence 11122222333211 0234555566678888999999986 3 3322 1112222 1122
Q ss_pred CCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 917 GIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 917 g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
.+...+.+.|.++||.+.. .+||+++.. |++|+++ +++.|+++
T Consensus 353 -~~~~~~~~~l~~~gv~v~~-------~~Ris~~~~-~~e~i~~--~~~~l~~~ 395 (396)
T 2q7w_A 353 -LTKEQVLRLREEFGVYAVA-------SGRVNVAGM-TPDNMAP--LCEAIVAV 395 (396)
T ss_dssp -CCHHHHHHHHHHHCEECCT-------TCEEEGGGC-CTTTHHH--HHHHHHHH
T ss_pred -CCHHHHHHHHHhcCeeecC-------CceEEEeec-CHHHHHH--HHHHHHhc
Confidence 2355677777788998742 379999853 8999999 66666654
No 385
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.58 E-value=2.6e-14 Score=167.02 Aligned_cols=292 Identities=12% Similarity=0.064 Sum_probs=174.0
Q ss_pred HHHHHHHHHHh-CCC-----ccc-ee--cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHH----HCC
Q 001989 635 NNLGEWLCTIT-GFD-----SFS-LQ--PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA----MCG 701 (985)
Q Consensus 635 ~e~~~~la~l~-G~~-----~~~-~~--~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~----~~G 701 (985)
.++++.+++++ |.+ ... ++ +++|++|+..+.. +.... .++++|+++++.|..+...++ ..|
T Consensus 97 ~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~-~~~~~-----~~gd~Vlv~~p~~~~~~~~~~~~~~~~G 170 (448)
T 3meb_A 97 PLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFE-FLHLW-----MPKAEFYMPSTTWPNHYGIYDKVFNKLK 170 (448)
T ss_dssp HHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHH-HHHHH-----CTTCCEEEESSCCTHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHH-HHHHh-----CCCCEEEECCCCCHhHHHHHHhhHHhCC
Confidence 35666677665 776 233 33 5666666643222 22211 367899999998988888888 899
Q ss_pred cEEEEEcC-CCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccc-ccc
Q 001989 702 MKIVSVGT-DAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMN-AQV 774 (985)
Q Consensus 702 ~~vv~v~~-d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~eI~~la~~~galliVD~a~~~-~~~ 774 (985)
++++.+|+ +++ +.+|+++|++++++.+++++++++++| |++|.+. .++++|+++|+++|+++++|+++.. +.+
T Consensus 171 ~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~ 250 (448)
T 3meb_A 171 VPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATG 250 (448)
T ss_dssp SCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSS
T ss_pred CeEEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCC
Confidence 99999998 664 789999999999854456788888888 5789885 1466799999999999999998631 111
Q ss_pred CCC-C-C--C---ccCCc-EEEeCCcccccccCCCCCCceEEE--EE--------c-c----cccCcCCCCccccCCCCC
Q 001989 775 GLT-S-P--G---YIGAD-VCHLNLHKTFCIPHGGGGPGMGPI--GV--------K-K----HLAPFLPSHPVVSTGGIP 831 (985)
Q Consensus 775 ~l~-~-p--g---~~g~D-i~~~s~hK~l~~p~g~GGPg~G~i--~~--------~-~----~l~~~lp~~~~g~~~~~~ 831 (985)
+.. . + . ..+.+ +++.|+||.|+.| |.++|++ ++ . + .+...+....
T Consensus 251 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~----G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~-------- 318 (448)
T 3meb_A 251 SFEADAFAVRMFVDAGVEVLVAQSFSKNFGLY----GERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQI-------- 318 (448)
T ss_dssp CHHHHTHHHHHHHHTTCCEEEEEECTTTSCCG----GGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHH--------
T ss_pred CcccCchhHHHHhhcCCcEEEEecccccCCCc----cccceeeeeeeccccccccCCHHHHHHHHHHHHHHH--------
Confidence 100 0 0 0 12334 6688999998643 5678987 55 3 3 3332221000
Q ss_pred CCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhc-----HHHHHHHHHHHHHHHHHHHHHhhc-cC-C------eeecCCC
Q 001989 832 APEKSQPLGTIAAAPWGSALILPISYTYIAMMG-----SKGLTEASKIAILNANYMAKRLEK-HY-P------ILFRGVN 898 (985)
Q Consensus 832 ~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg-----~eGl~~~~~~~~~~a~~l~~~L~~-g~-~------l~~~~~~ 898 (985)
...+++.+. .++ .++.+.|.... .+.+.+..++..++++++.+.|++ ++ . +....+.
T Consensus 319 ----~~~~~~~~~--~~~----~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~ 388 (448)
T 3meb_A 319 ----RKTWSMSAI--HGA----YIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTA 388 (448)
T ss_dssp ----HTTTSSCCH--HHH----HHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHC
T ss_pred ----hcccCCccH--HHH----HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCC
Confidence 001112211 111 11112221100 133566667778888999999976 22 1 1111111
Q ss_pred CceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhh
Q 001989 899 GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRL 974 (985)
Q Consensus 899 ~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~ 974 (985)
+.. +++ . +.+.+.+...|.++||.+..- ..||++.. .+.++|++ +++.|+++++++
T Consensus 389 ~g~---~~~--~------~~~~~~~~~ll~~~gV~v~~G------~gRis~a~-~~~~~i~~--~~~~l~~~l~~~ 444 (448)
T 3meb_A 389 IGM---FTF--T------GLTPEHVDYLKEKWSIYLVKA------GGRMSMCG-LTESNCDY--VAEAIHDAVTKL 444 (448)
T ss_dssp CSS---EEE--C------CCCHHHHHHHHHHHCEEECSG------GGEEEGGG-CCTTTHHH--HHHHHHHHHHHS
T ss_pred ceE---EEe--c------CCCHHHHHHHHHhCCEEEeCC------CcEEEEec-CCHHHHHH--HHHHHHHHHHhc
Confidence 111 111 1 334444444446679987431 23898864 35667999 888898888754
No 386
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.58 E-value=2.4e-13 Score=156.03 Aligned_cols=276 Identities=14% Similarity=0.098 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhh----c-CCCCEEEEcCCCC-hhHHHHHHHhh--------c
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ----K-GKKKTFIIASNCH-PQTIDICITRA--------D 277 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~----~-~~g~~Vlv~~~~H-~s~~~~~~~~a--------~ 277 (985)
...++++.+++++|.+ ++.+++|||.+++.++.+.... . .++++||+.+..| ......+.... .
T Consensus 82 ~~~~l~~~la~~~~~~--~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~ 159 (406)
T 4adb_A 82 PVLRLAKKLIDATFAD--RVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFA 159 (406)
T ss_dssp HHHHHHHHHHHHSSCS--EEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGC
T ss_pred HHHHHHHHHHhhCCCC--eEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCC
Confidence 3456788999999877 6889999998888777544210 0 1447887766544 44444432211 0
Q ss_pred CCCeEEEEe---Cchhhhc-cCCCEeEEEEEcC-CCCee-----eccHHHHHHHHHhCCcEEEEEecCc-cccCCCCC--
Q 001989 278 GFDIKVVVS---DLKDIDY-KSGDVCGVLVQYP-GTEGE-----VLDYGDFIKNAHANGVKVVMATDLL-ALTILKPP-- 344 (985)
Q Consensus 278 ~~gi~v~~v---~~~~l~~-l~~~t~~V~v~~p-n~~G~-----v~di~~I~~~a~~~galliV~a~~~-~lg~l~~~-- 344 (985)
..+..+..+ |+++|++ +++++++|+++ | |.+|. .+++++|.++|+++|+++++|. .. .++....+
T Consensus 160 ~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De-~~~~~~~~g~~~~ 237 (406)
T 4adb_A 160 PLPADIRHAAYNDINSASALIDDSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDE-VQTGVGRTGELYA 237 (406)
T ss_dssp SCCSSEEEECTTCHHHHHTTCSTTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEEC-TTTTTTTTSSSSH
T ss_pred CCCCCceEeCCCcHHHHHHHhcCCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEec-cccCCCccchhHH
Confidence 111344444 4466777 78899999998 6 66653 3589999999999999999953 33 23222111
Q ss_pred ---CcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCcc
Q 001989 345 ---GELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNIC 421 (985)
Q Consensus 345 ---~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~ 421 (985)
...+.|+++. +|.|+ | |-.+|++++++++.+.+..... ..|.+.
T Consensus 238 ~~~~~~~~d~~t~-sK~~~-~----G~r~G~~~~~~~~~~~~~~~~~--------------------------~~~~~~- 284 (406)
T 4adb_A 238 YMHYGVTPDLLTT-AKALG-G----GFPVGALLATEECARVMTVGTH--------------------------GTTYGG- 284 (406)
T ss_dssp HHHHTCCCSEEEE-CGGGG-T----TSCCEEEEECHHHHHTCCTTSS--------------------------CCSSTT-
T ss_pred HHhcCCCCCEEEe-chhhc-C----CCCeEEEEEcHHHHhhhccCCc--------------------------CCCCCC-
Confidence 1234688755 68885 2 2346899999998877632110 011111
Q ss_pred chhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCC-eEEcCC--CCcceEEEecC-----CHHHHHHHHH
Q 001989 422 TAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGT-VEVQGL--PFFDTVKVKCA-----DAHAIASAAY 493 (985)
Q Consensus 422 t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~-~~~~~~--~~~~~~~~~~~-----~~~~v~~~L~ 493 (985)
++....+..++ +..+.. +++.++..++.+++++.|++++. +.+... ....-+.+..+ ...++.+.|.
T Consensus 285 ~~~~~~a~~~~--l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~ 359 (406)
T 4adb_A 285 NPLASAVAGKV--LELINT---PEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYAGQAKQISQEAA 359 (406)
T ss_dssp CHHHHHHHHHH--HHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECTTTTTCHHHHHHHHH
T ss_pred CHHHHHHHHHH--HHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCcHHHHHHHHHHHH
Confidence 11112222222 344433 57778888899999999887530 111100 01112333332 2788999999
Q ss_pred HcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 494 KIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 494 ~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++||.+.....+.+|++++..+|++|+++++++|.+
T Consensus 360 ~~gi~v~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~ 395 (406)
T 4adb_A 360 KAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDRFAA 395 (406)
T ss_dssp HTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HCCcEEeecCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 999998775578999999999999999999999974
No 387
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.58 E-value=1.9e-13 Score=159.86 Aligned_cols=296 Identities=14% Similarity=0.092 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCcccHHHHH----------HC
Q 001989 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPATAA----------MC 700 (985)
Q Consensus 632 ~~~~e~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~-~~Hg~~~~~a~----------~~ 700 (985)
+...++.++++++++-....++.++|++|+++++.++|.+. ++++||+.+ .+||....... ..
T Consensus 97 ~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 170 (453)
T 2cy8_A 97 PLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFT------GRRMILRFEGHYHGWHDFSASGYNSHFDGQPAP 170 (453)
T ss_dssp HHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHH------CCCEEEEECC-----------------------
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhh------CCCEEEEEcCCcCCCchhhHhhcCCccCCCcCC
Confidence 34567788888887512234667889998887777766542 345676654 56765433221 12
Q ss_pred CcE------EEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccc
Q 001989 701 GMK------IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGAN 769 (985)
Q Consensus 701 G~~------vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~d----i~eI~~la~~~galliVD~a~ 769 (985)
|+. +..+|. .|+++|+++++++.+++++|+++.. +.+|.+. + +++|.++|+++|+++|+|++|
T Consensus 171 g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~-~~~~~l~~l~~l~~~~g~~lI~DEv~ 244 (453)
T 2cy8_A 171 GVLPETTANTLLIRP-----DDIEGMREVFANHGSDIAAFIAEPVGSHFGVTP-VSDSFLREGAELARQYGALFILDEVI 244 (453)
T ss_dssp -----CGGGEEEECT-----TCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEE-CCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCccccCceeecCC-----CCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEecCc
Confidence 432 444554 3899999999743346777766543 3478776 6 999999999999999999998
Q ss_pred cccccCCCCCC-----ccCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCCCCC
Q 001989 770 MNAQVGLTSPG-----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAA 844 (985)
Q Consensus 770 ~~~~~~l~~pg-----~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s 844 (985)
. ++ .....+ ...+|++++ +|+|+ +|.++|++++++++.+.+.....+. . ...+
T Consensus 245 ~-g~-~~g~~~~~~~~~~~~di~s~--sK~l~-----~G~~~G~v~~~~~~~~~l~~~~~~~-----------~--~~~~ 302 (453)
T 2cy8_A 245 S-GF-RVGNHGMQALLDVQPDLTCL--AKASA-----GGLPGGILGGREDVMGVLSRGSDRK-----------V--LHQG 302 (453)
T ss_dssp T-TT-TTCTTHHHHHHTCCCSEEEE--EGGGG-----TTSSCEEEEECHHHHTTSSSCC---------------------
T ss_pred c-cc-ccCchhhhHHhCCCCcEEEE--Chhhh-----CCcceEEEechHHHHHHhccccCCC-----------c--eeCC
Confidence 4 22 111111 123688754 59884 3567899999988766553210000 0 0001
Q ss_pred cchhhhHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHhhcc---CCee--ecCCCCceeeEEEEEecC-----c-
Q 001989 845 APWGSALILPISYTYIAM-MGSKGLTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRG-----L- 912 (985)
Q Consensus 845 ~~~g~~~~~~~a~a~l~~-lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l~--~~~~~~~~~~~~iv~~~~-----~- 912 (985)
++.+++..++++.+.+.. + .+++ .++..+++++++++|++. +.+. ..+ .+.+ +.+.++. .
T Consensus 303 t~~~n~~~~aa~~aal~~~~-~~~~---~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~---~~i~~~~~~~~~~~ 374 (453)
T 2cy8_A 303 TFTGNPITAAAAIAAIDTIL-EDDV---CAKINDLGQFAREAMNHLFARKGLNWLAYG-RFSG---FHLMPGLPPNTTDT 374 (453)
T ss_dssp -CCCCHHHHHHHHHHHHHHH-HTTH---HHHHHHHHHHHHHHHHHHHHHTTCCEEEEC-CTTE---EEEEETSCTTCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHh-hhhH---HHHHHHHHHHHHHHHHHHHhhCCCcEEEEE-eeeE---EEEEEecccccccc
Confidence 112234445555566666 5 4433 446677788888888652 2221 222 2222 2344431 0
Q ss_pred -----cc---cCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHhhccCC
Q 001989 913 -----KN---TAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHRLKMGR 978 (985)
Q Consensus 913 -----~~---~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~~~~~~ 978 (985)
.. .......++.+.|.++||.+... +.++ ++..+|++||++ +++.|++++++++..-
T Consensus 375 ~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~~~-----~~~~--l~~~~t~~~i~~--~l~~l~~~l~~~~~~~ 439 (453)
T 2cy8_A 375 GSITRAEVARPDVKMIAAMRMALILEGVDIGGR-----GSVF--LSAQHEREHVEH--LVTTFDRVLDRLADEN 439 (453)
T ss_dssp HHHHTTCSCCCCHHHHHHHHHHHHHTTEECBTT-----TEEE--CCTTCCHHHHHH--HHHHHHHHHHHHHHTT
T ss_pred ccccccccccccHHHHHHHHHHHHHCCeEEeCC-----CCEE--eeccCCHHHHHH--HHHHHHHHHHHHHhCC
Confidence 00 00012567999999999988321 3444 567899999999 8899999988776543
No 388
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.57 E-value=1.1e-13 Score=160.71 Aligned_cols=316 Identities=15% Similarity=0.141 Sum_probs=190.1
Q ss_pred cCCCCCCCCCcHHHHHHHHhCC------ccccccCCChhhHhhhHHHHHHHHHHHHHHhc----CCCCcceeeccchHHH
Q 001989 171 IGMGYYNTHVPPVILRNIMENP------AWYTQYTPYQAEIAQGRLESLLNFQTMIADLT----GLPMSNASLLDEGTAA 240 (985)
Q Consensus 171 lG~g~y~~~~p~~v~~~i~~~~------~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~----g~~~~~~sl~~~~ta~ 240 (985)
++.|.|+...|+.+.+++.+.- ..+..|+|.+ | ..++++.+|+++ +.++.++.+++|++++
T Consensus 61 l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~-----g----~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~a 131 (432)
T 3ei9_A 61 LGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQ-----G----AKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCD 131 (432)
T ss_dssp CSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTT-----C----CHHHHHHHHHHHHTTTTCCGGGEEEESCHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCC-----C----CHHHHHHHHHHHHccCCCCcceEEECCChHHH
Confidence 4666666566666654443211 1122343321 1 234566777775 7788889999999988
Q ss_pred HHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCC---------eEEEEeCch---hhhc-c--CCCEeEEEEEc
Q 001989 241 AEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFD---------IKVVVSDLK---DIDY-K--SGDVCGVLVQY 305 (985)
Q Consensus 241 ~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~g---------i~v~~v~~~---~l~~-l--~~~t~~V~v~~ 305 (985)
+..+ .++ . ++||+|+++...|+++...++.. ...| .+++.++.+ ++.. + .+++++|++.+
T Consensus 132 l~~l-~~l-~--~~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~ 206 (432)
T 3ei9_A 132 ISRL-QVM-F--GSNVTIAVQDPSYPAYVDSSVIM-GQTGQFNTDVQKYGNIEYMRCTPENGFFPDLSTVGRTDIIFFCS 206 (432)
T ss_dssp HHHH-HHH-H--CTTCCEEEEESCCTHHHHHHHHH-TCSCCEETTTTEETTCEEEECCGGGTTSCCGGGCCCCSEEEEES
T ss_pred HHHH-HHH-c--CCCCEEEEeCCCCHHHHHHHHHc-CCcccccccccccCceEEeccCcccCCcCChhhCCCCCEEEEeC
Confidence 7753 332 2 38899999999999999888653 2222 234444432 1221 2 35789999999
Q ss_pred C-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCC--------CCCcccceEEEecC-ccccccCCCCCCcEEE
Q 001989 306 P-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK--------PPGELGADIVVGSA-QRFGVPMGYGGPHAAF 372 (985)
Q Consensus 306 p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~--------~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~ 372 (985)
| |++|.+. ++++|+++|+++|+++++| +.++..... .++..+.+|+++|. |.|+. .|-.+|+
T Consensus 207 p~NPtG~~~~~~~l~~l~~la~~~~~~li~D-ea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~----~G~r~G~ 281 (432)
T 3ei9_A 207 PNNPTGAAATREQLTQLVEFAKKNGSIIVYD-SAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGF----TGVRLGW 281 (432)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE-CTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCT----TTTCCEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCcEEEEc-cchHhhccCCCCCChhhcCCCCCeEEEEecchhccCC----cccceEE
Confidence 8 7899876 5778888899999999995 333321111 11234667999998 88863 2345789
Q ss_pred EEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH-HHHHhCcchHHHHHHHHH
Q 001989 373 LATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM-YAVYHGPEGLKTIAQRVH 451 (985)
Q Consensus 373 l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~-~l~~~g~~Gl~~i~~~~~ 451 (985)
++++++++..- ... + + +..++.......+. . ..+..++. .+...+.+.++++.++..
T Consensus 282 ~~~~~~~~~~~------------~~~-----~--~-~~~~~~~~~~~~~~-~-~~~~~a~~~~l~~~~~~~~~~~~~~~~ 339 (432)
T 3ei9_A 282 TVIPKKLLYSD------------GFP-----V--A-KDFNRIICTCFNGA-S-NISQAGALACLTPEGLEAMHKVIGFYK 339 (432)
T ss_dssp EECCTTCBCTT------------SCB-----H--H-HHHHHHHHHSCCCS-C-HHHHHHHHHHSSHHHHHHHHHHHHHHH
T ss_pred EEEChHHhhcc------------hHH-----H--H-HHHHHHhccccCCC-C-HHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 88876652100 000 0 0 00000000011111 1 11222222 111112245678888999
Q ss_pred HHHHHHHHHHhcCCCeEEcCCCCcceEEEecCC--HHHHHHHHHHc-Cceeeee------cCCeEEEEeccCCCHHHHHH
Q 001989 452 GLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKI-EMNLRVV------DSNTVTASFDETTTLEDVDK 522 (985)
Q Consensus 452 ~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~--~~~v~~~L~~~-GI~~~~~------~~~~lris~t~~~t~edId~ 522 (985)
++.+++++.|+++| +++..+....-+.+.+++ ..++.+.|.++ ||.+... ..+.+|+++ .+++++|++
T Consensus 340 ~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~--~~~~e~l~~ 416 (432)
T 3ei9_A 340 ENTNIIIDTFTSLG-YDVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSA--FGHRENILE 416 (432)
T ss_dssp HHHHHHHHHHHHTT-CCEEECSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEEC--CSCHHHHHH
T ss_pred HHHHHHHHHHHHCC-ceecCCCcceEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEe--cCCHHHHHH
Confidence 99999999999987 776532211224455554 77888887764 9987542 257899997 569999999
Q ss_pred HHHHHhCC
Q 001989 523 LFIVFAGG 530 (985)
Q Consensus 523 li~aL~~~ 530 (985)
.++.|++.
T Consensus 417 ~l~rl~~~ 424 (432)
T 3ei9_A 417 ACRRFKQL 424 (432)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999754
No 389
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.57 E-value=7.6e-14 Score=161.77 Aligned_cols=271 Identities=14% Similarity=0.068 Sum_probs=178.9
Q ss_pred HHHHHHHHhc----C---CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC
Q 001989 215 NFQTMIADLT----G---LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD 287 (985)
Q Consensus 215 e~q~~ia~L~----g---~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~ 287 (985)
++++.+|+++ | .++.++.+++|+|.++++++.++. ++||+|+++...|+++...++ ..|.+++.++
T Consensus 89 ~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~---~~gd~Vl~~~p~y~~~~~~~~----~~g~~~~~v~ 161 (425)
T 1vp4_A 89 VLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFL---DDESYCVLDDPAYLGAINAFR----QYLANFVVVP 161 (425)
T ss_dssp HHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHC---CTTCEEEEEESCCHHHHHHHH----TTTCEEEEEE
T ss_pred HHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhC---CCCCEEEEeCCCcHHHHHHHH----HcCCEEEEec
Confidence 3556666666 8 556789899999988877776552 378999999999999888764 3577777764
Q ss_pred c-------hhhhc-cCC--------CEeEEE-EEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCC-C---
Q 001989 288 L-------KDIDY-KSG--------DVCGVL-VQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL-K--- 342 (985)
Q Consensus 288 ~-------~~l~~-l~~--------~t~~V~-v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l-~--- 342 (985)
. ++|++ +++ ++++|+ +.+| |.+|.+.+ +++|+++|+++|+++++| +..+.... .
T Consensus 162 ~~~~~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~D-e~~~~~~~~g~~~ 240 (425)
T 1vp4_A 162 LEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVED-DPYGALRYEGETV 240 (425)
T ss_dssp EETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE-CSSTTCBCSSCCC
T ss_pred cCCCCCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEE-CCCccccCCCCCC
Confidence 3 45655 544 788885 5677 78998865 678999999999999995 33332221 1
Q ss_pred -CC---CcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccC
Q 001989 343 -PP---GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKAT 417 (985)
Q Consensus 343 -~~---~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~at 417 (985)
+. +..+.+++++|. |.|+ | |--+|++++++++++.+... +. ..
T Consensus 241 ~~~~~~~~~~~~i~~~s~sK~~~-~----G~r~G~~~~~~~~~~~l~~~-------------------------~~-~~- 288 (425)
T 1vp4_A 241 DPIFKIGGPERVVLLNTFSKVLA-P----GLRIGMVAGSKEFIRKIVQA-------------------------KQ-SA- 288 (425)
T ss_dssp CCHHHHHCTTTEEEEEESTTTTC-G----GGCEEEEECCHHHHHHHHHH-------------------------HH-HH-
T ss_pred cCHHHhCCCCCEEEEeccccccc-c----ccceEEEeeCHHHHHHHHHH-------------------------hh-hh-
Confidence 11 123568888887 7664 2 22369999998877655100 00 00
Q ss_pred CCccch-hHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHHHHHHhcC-C---CeEEcCCCCcceEEEecCC---HHHH
Q 001989 418 SNICTA-QALLANMAAMYAVYHG-PEGLKTIAQRVHGLAGTFALGLKKL-G---TVEVQGLPFFDTVKVKCAD---AHAI 488 (985)
Q Consensus 418 sni~t~-~~l~a~~aa~~l~~~g-~~Gl~~i~~~~~~~a~~l~~~L~~~-g---~~~~~~~~~~~~~~~~~~~---~~~v 488 (985)
..+++ ....+..++ +.... .+.++++.++..++.+++.+.|++. + ++++..+....-+.+..+. ..++
T Consensus 289 -~~~~~~~~~~a~~~~--l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~l 365 (425)
T 1vp4_A 289 -DLCSPAITHRLAARY--LERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEM 365 (425)
T ss_dssp -HSSCCHHHHHHHHHH--HHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTCCTTTT
T ss_pred -cCCCCHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcCCCCCHHHH
Confidence 01111 112222222 22211 3456778888889999999999875 1 3777532212234455542 6778
Q ss_pred HHHHHHcCceeeee--------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 489 ASAAYKIEMNLRVV--------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 489 ~~~L~~~GI~~~~~--------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.|.++||.+... ..+.+|++++.. |++|+++++++|.+
T Consensus 366 ~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~e~i~~~l~~l~~ 413 (425)
T 1vp4_A 366 FEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLP-PDEKIVEGIKRLRE 413 (425)
T ss_dssp HHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSS-CHHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHH
Confidence 88999889987542 247899999875 89999999999974
No 390
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.57 E-value=3.6e-13 Score=154.29 Aligned_cols=271 Identities=7% Similarity=-0.024 Sum_probs=179.4
Q ss_pred HHHHHHHHh----cC--CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 215 NFQTMIADL----TG--LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 215 e~q~~ia~L----~g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
++++.+|++ .| .++.++.+++|+|.++++++.++. ++||+|+++...|+++...++ ..|.+++.++.
T Consensus 70 ~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~---~~gd~vl~~~p~~~~~~~~~~----~~g~~~~~~~~ 142 (399)
T 1c7n_A 70 EYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT---KPGDGVIIITPVYYPFFMAIK----NQERKIIECEL 142 (399)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC---CTTCEEEECSSCCTHHHHHHH----TTTCEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhc---CCCCEEEEcCCCcHhHHHHHH----HcCCEEEeccc
Confidence 345555555 47 566789999999988887776652 378999999999999888764 35777776654
Q ss_pred -----------hhhhc-cC-CCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCC-----CCCCc
Q 001989 289 -----------KDIDY-KS-GDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL-----KPPGE 346 (985)
Q Consensus 289 -----------~~l~~-l~-~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l-----~~~~~ 346 (985)
++|++ ++ +++++|++.+| |.+|.+.| +++|+++|+++|+++++|. ..+.... .+...
T Consensus 143 ~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~g~~~~~~~~ 221 (399)
T 1c7n_A 143 LEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDE-IHFDLIMPGYEHTVFQS 221 (399)
T ss_dssp EEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEEC-TTTTCBCTTCCCCCGGG
T ss_pred ccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEc-cccccccCCCCcccHHH
Confidence 34555 65 78999999888 77999987 9999999999999999953 3332111 11111
Q ss_pred -----ccceEEEecC-ccccccCCCCCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 347 -----LGADIVVGSA-QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 347 -----~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
.+.+++++|. |.|+.| |..+|+++++ +++.+.+.... ..+ .-++.|
T Consensus 222 ~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~l~~~~----------~~~-------------~~~~~~ 274 (399)
T 1c7n_A 222 IDEQLADKTITFTAPSKTFNIA----GMGMSNIIIKNPDIRERFTKSR----------DAT-------------SGMPFT 274 (399)
T ss_dssp SCHHHHTTEEEEECSHHHHTCG----GGCCEEEECCCHHHHHHHHHHH----------HHT-------------TCCCCC
T ss_pred cCccccCcEEEEEeChhhcccc----chheEEEEECCHHHHHHHHHHH----------hhc-------------ccCCCC
Confidence 3567888887 877532 2346899986 45665541000 000 001111
Q ss_pred ccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc-CCCeEEcCCCCcceE-EEecC----CHHHHHHHHH
Q 001989 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQGLPFFDTV-KVKCA----DAHAIASAAY 493 (985)
Q Consensus 420 i~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~~~~~~~~~-~~~~~----~~~~v~~~L~ 493 (985)
. ....+..+++ . .+.+.++++.++..++.+++.+.|++ ++++++..+. ..-+ .+..+ +..++.+.|.
T Consensus 275 ~---~~~~a~~~~l--~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ 347 (399)
T 1c7n_A 275 T---LGYKACEICY--K-ECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIE-GTYLQWIDFRALKMDHKAMEEFMI 347 (399)
T ss_dssp H---HHHHHHHHHH--H-HCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCS-BSSEEEEECGGGCCCHHHHHHHHH
T ss_pred H---HHHHHHHHHH--h-CChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCC-ceEEEEEEcccCCCCHHHHHHHHH
Confidence 1 1222222222 2 23567888889999999999999998 6337665321 1222 24443 2778999997
Q ss_pred -HcCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 494 -KIEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 494 -~~GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++||.+... .++.+|++++.. +++|+++++.|.+
T Consensus 348 ~~~gi~v~~g~~~~~~~~~~iRis~~~~--~~~l~~~l~~l~~ 388 (399)
T 1c7n_A 348 HKAQIFFDEGYIFGDGGIGFERINLAAP--SSVIQESLERLNK 388 (399)
T ss_dssp HTTCCCCEEGGGGCGGGTTEEEEECCSC--HHHHHHHHHHHHH
T ss_pred HhCCEEEeCccccCCCCCCeEEEEeccC--HHHHHHHHHHHHH
Confidence 689987542 247899999864 7899999888864
No 391
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.56 E-value=2e-14 Score=179.04 Aligned_cols=340 Identities=12% Similarity=0.053 Sum_probs=198.8
Q ss_pred cccccc-ccCCCccccccccccccccccCCCCchhhhhhHHHHHHHHHHHHHHHhCCC--ccceecCcHHHHHHHHHHHH
Q 001989 592 IPLGSC-TMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVI 668 (985)
Q Consensus 592 ~~lG~~-t~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e~~~~la~l~G~~--~~~~~~~sGa~a~~a~l~ai 668 (985)
..+|+| ++.+..+...+........ ... ...+...++.+.|+++++.+ ...|+.+||++|++++++++
T Consensus 392 ~~lGh~~~p~i~~Ai~~Q~~~l~h~~---~~~------~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A 462 (831)
T 4a0g_A 392 QGPDPTFQAELAREMGYTAARFGHVM---FPE------NVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMA 462 (831)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHSSCC---CTT------EECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHhhccccc---ccc------cCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHH
Confidence 468998 8888877666643322211 000 00122447889999998743 23577899999999999988
Q ss_pred -HHHHHhcCCC--------CCCEEEE-cCCCCcccHHHHHHCCc---------------EE-------------EEEcCC
Q 001989 669 -RAYHKARGDH--------HRNVCII-PVSAHGTNPATAAMCGM---------------KI-------------VSVGTD 710 (985)
Q Consensus 669 -r~~~~~~g~~--------~~~~IIv-~~~~Hg~~~~~a~~~G~---------------~v-------------v~v~~d 710 (985)
|.|...+|.. ++.+||. ...+||....++...|. .+ ..++..
T Consensus 463 ~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p 542 (831)
T 4a0g_A 463 FRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLP 542 (831)
T ss_dssp HHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECC
T ss_pred HHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCC
Confidence 6676555531 2456775 67899988776554331 11 112221
Q ss_pred CCC---------CCC------------------HHHHHHHHHh-----cCCCEEEEEEEcC--CCccccccC---HHHHH
Q 001989 711 AKG---------NIN------------------IEELRKAAEA-----NRDNLSTLMVTYP--STHGVYEEG---IDEIC 753 (985)
Q Consensus 711 ~~g---------~iD------------------~e~L~~~i~~-----~~~~t~~Vvv~~p--n~~G~i~~d---i~eI~ 753 (985)
... ..| .++|++.|++ ..+++++|+++.. +..|++.+| +++|.
T Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~ 622 (831)
T 4a0g_A 543 ESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLV 622 (831)
T ss_dssp TTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHH
T ss_pred ccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHH
Confidence 100 012 2577777752 2356778877652 345666422 89999
Q ss_pred HHHHHcCCEEEEEccccccccCCCCCCccC--------CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccc
Q 001989 754 KIIHDNGGQVYMDGANMNAQVGLTSPGYIG--------ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVV 825 (985)
Q Consensus 754 ~la~~~galliVD~a~~~~~~~l~~pg~~g--------~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g 825 (985)
++|+++|+++|+|+++ .|+++.|.++ +|+++++ |.++ +|...+|++++++++.+.+....
T Consensus 623 ~lc~~~gilLI~DEV~----tGfGRtG~~fa~e~~gv~PDiitls--K~L~----gG~~Plgav~~~~~i~~~~~~~~-- 690 (831)
T 4a0g_A 623 NECRNRKIPVIFDEVF----TGFWRLGVETTTELLGCKPDIACFA--KLLT----GGMVPLAVTLATDAVFDSFSGDS-- 690 (831)
T ss_dssp HHHHHTTCCEEEECTT----TTTTTTSBSSTHHHHSSCCSEEEEC--GGGG----TTSSCCEEEEECHHHHHTTCSSC--
T ss_pred HHHHHcCCeEEEEcCc----cccccCCCchhhHhcCCCCcEEEEe--cccc----cCccCcEEEEECHHHHHHHhccc--
Confidence 9999999999999886 3444444432 6998764 7763 33245788888888776553210
Q ss_pred cCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH--------HHHHHhhccCCee-ecC
Q 001989 826 STGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNAN--------YMAKRLEKHYPIL-FRG 896 (985)
Q Consensus 826 ~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~--------~l~~~L~~g~~l~-~~~ 896 (985)
+...... ..++.|++++++++.+.|..+..+++.+. ..++.+ .+.+.+.+...+. ..+
T Consensus 691 ---------~~~~~~h-g~T~~g~Pla~Aaala~L~~i~~~~l~~~---~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg 757 (831)
T 4a0g_A 691 ---------KLKALLH-GHSYSAHAMGCATAAKAIQWFKDPETNHN---ITSQGKTLRELWDEELVQQISSHSAVQRVVV 757 (831)
T ss_dssp ---------GGGSCCC-CCTTTTCHHHHHHHHHHHHHHHCTTTCTT---BCTTSSBBCCCSCHHHHHHHHHSTTEEEEEE
T ss_pred ---------cccccee-ecCCcccHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHhhCCCceeEee
Confidence 0000111 12345677888888888887755443322 111112 2333343321111 111
Q ss_pred CCCceeeEEEEEecCcc--c-cCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 897 VNGTVAHEFIVDLRGLK--N-TAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 897 ~~~~~~~~~iv~~~~~~--~-~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
. +. + +.+.+..-. . .......++.++|.++|+++... .+.||++++..+|++|||+ ++++|++++++
T Consensus 758 ~-Gl-~--~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~----g~~lrl~pp~~~t~e~id~--~~~~l~~~l~~ 827 (831)
T 4a0g_A 758 I-GT-L--FALELKADASNSGYASLYAKSLLIMLREDGIFTRPL----GNVIYLMCGPCTSPEICRR--LLTKLYKRLGE 827 (831)
T ss_dssp E-TT-E--EEEEEC---------CHHHHHHHHHHHHTTEECCCB----TTEEEEECCTTCCHHHHHH--HHHHHHHHHTT
T ss_pred c-cc-E--EEEEEecCccccccchHHHHHHHHHHHHCCcEEEec----CCEEEEECCCCCCHHHHHH--HHHHHHHHHHH
Confidence 1 11 1 223321000 0 00112457889999999998643 4899999999999999999 88899988876
Q ss_pred hc
Q 001989 974 LK 975 (985)
Q Consensus 974 ~~ 975 (985)
++
T Consensus 828 l~ 829 (831)
T 4a0g_A 828 FN 829 (831)
T ss_dssp TC
T ss_pred hc
Confidence 64
No 392
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.56 E-value=2.1e-13 Score=159.34 Aligned_cols=269 Identities=13% Similarity=0.078 Sum_probs=179.6
Q ss_pred HHHHHHHHhc----CC-CCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-
Q 001989 215 NFQTMIADLT----GL-PMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL- 288 (985)
Q Consensus 215 e~q~~ia~L~----g~-~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~- 288 (985)
++++.+|+++ |. ++.++.+++|+|.+++.++.++ . ++||+|+++...|+.+...++ ..|.+++.++.
T Consensus 122 ~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l-~--~~Gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~~ 194 (448)
T 3aow_A 122 PLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVF-L--NPGDIVVVEAPTYLAALQAFN----FYEPQYIQIPLD 194 (448)
T ss_dssp HHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHH-C--CTTCEEEEEESCCHHHHHHHH----TTCCEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHH-c--CCCCEEEEeCCChHHHHHHHH----HcCCEEEEeccC
Confidence 4566777777 98 6678999999998888777654 2 378999999999999888865 35777777653
Q ss_pred ------hhhhc-cC----C--CEeEEE-EEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCC-----CCCC
Q 001989 289 ------KDIDY-KS----G--DVCGVL-VQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL-----KPPG 345 (985)
Q Consensus 289 ------~~l~~-l~----~--~t~~V~-v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l-----~~~~ 345 (985)
++|++ ++ + ++++|+ +.+| |.+|.+.+ +++|.++|+++|+++++| ++.+.... .+..
T Consensus 195 ~~g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~D-e~y~~~~~~g~~~~~~~ 273 (448)
T 3aow_A 195 DEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVED-DPYGELRYSGNPEKKIK 273 (448)
T ss_dssp TTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE-CSCTTCBCSSCCCCCTG
T ss_pred CCCCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEE-CCCccccCCCCCCcCHH
Confidence 45666 65 4 789885 4666 78998865 679999999999999995 34333221 1111
Q ss_pred ---cccceEEEecC-ccccccCCCCCCc--EEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 346 ---ELGADIVVGSA-QRFGVPMGYGGPH--AAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 346 ---~~GaDi~v~s~-k~lg~P~~~GGP~--~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
..|.++++++. |.|+ || +|++++++++++.+... +.. ..
T Consensus 274 ~~~~~~~vi~~~S~SK~~~-------~GlriG~v~~~~~l~~~l~~~--------------------------~~~--~~ 318 (448)
T 3aow_A 274 ALDNEGRVIYLGTFSKILA-------PGFRIGWMVGDPGIIRKMEIA--------------------------KQS--TD 318 (448)
T ss_dssp GGCTTSCEEEEEESTTTTC-------GGGCCEEEEECHHHHHHHHHH--------------------------HHH--HH
T ss_pred hcCCCCCEEEEccchhhcc-------ccccEEEEEeCHHHHHHHHHH--------------------------HHH--hc
Confidence 23567888887 7664 34 69999998877655100 000 01
Q ss_pred ccchhHHHHHHHHHHHHHhC--cchHHHHHHHHHHHHHHHHHHHhcC-C-CeEEcCCCCcceEEEecCC---HHHHHHHH
Q 001989 420 ICTAQALLANMAAMYAVYHG--PEGLKTIAQRVHGLAGTFALGLKKL-G-TVEVQGLPFFDTVKVKCAD---AHAIASAA 492 (985)
Q Consensus 420 i~t~~~l~a~~aa~~l~~~g--~~Gl~~i~~~~~~~a~~l~~~L~~~-g-~~~~~~~~~~~~~~~~~~~---~~~v~~~L 492 (985)
.|++..... ++..++.. + .+.++++.++..++.+++.+.|++. + ++++..+....-+.++++. ..++.++|
T Consensus 319 ~~~~~~~q~-a~~~~L~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~v~~~~~~~~~~l~~~l 396 (448)
T 3aow_A 319 LCTNVFGQV-VAWRYVDG-GYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDGIDSKKMLERA 396 (448)
T ss_dssp SSCCHHHHH-HHHHHHHT-THHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECSTTCCHHHHHHHH
T ss_pred CCCCHHHHH-HHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEEEEEEcCCCCCHHHHHHHH
Confidence 122111111 11111221 2 2346777777888999999999874 2 3776532211223455542 78899999
Q ss_pred HHcCceeeee--------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 493 YKIEMNLRVV--------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 493 ~~~GI~~~~~--------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++||.+... .++.+|+|++. .+++||+++++.|.+
T Consensus 397 ~~~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~L~~ 440 (448)
T 3aow_A 397 IKKGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKRLAE 440 (448)
T ss_dssp HHTTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHHHHHHHHH
T ss_pred HHCCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHH
Confidence 9999987531 24689999986 489999999999874
No 393
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.55 E-value=7.8e-13 Score=151.09 Aligned_cols=270 Identities=13% Similarity=0.087 Sum_probs=174.7
Q ss_pred HHHHHHHhc----C--CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-
Q 001989 216 FQTMIADLT----G--LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL- 288 (985)
Q Consensus 216 ~q~~ia~L~----g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~- 288 (985)
+++.+|+++ | .++.++.+++|+|.++++++.++. ++||+|+++...|+++...++. .|.+++.++.
T Consensus 69 lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~---~~gd~vl~~~p~y~~~~~~~~~----~g~~~~~v~~~ 141 (390)
T 1d2f_A 69 FLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS---ETGEGVVIHTPAYDAFYKAIEG----NQRTVMPVALE 141 (390)
T ss_dssp HHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS---CTTCEEEEEESCCHHHHHHHHH----TTCEEEEEECE
T ss_pred HHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhc---CCCCEEEEcCCCcHHHHHHHHH----CCCEEEEeecc
Confidence 445555554 6 566789999999988887776652 3789999999999998888753 4777766543
Q ss_pred ----------hhhhc-cCC-CEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCC-----CCCCcc
Q 001989 289 ----------KDIDY-KSG-DVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL-----KPPGEL 347 (985)
Q Consensus 289 ----------~~l~~-l~~-~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l-----~~~~~~ 347 (985)
++|++ +.+ ++++|++++| |.+|.+.| +++|+++|+++|+++++| +..+.... .+...+
T Consensus 142 ~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D-e~~~~~~~~g~~~~~~~~~ 220 (390)
T 1d2f_A 142 KQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISD-EIHMDMVWGEQPHIPWSNV 220 (390)
T ss_dssp ECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEE-CTTTTCBCSSSCCCCGGGT
T ss_pred cCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEE-ccccccccCCCCCcCHHHc
Confidence 34555 654 7999998888 67999876 899999999999999995 33332211 111123
Q ss_pred c--c-eEEEecC-ccccccCCCCCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccc
Q 001989 348 G--A-DIVVGSA-QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT 422 (985)
Q Consensus 348 G--a-Di~v~s~-k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t 422 (985)
+ . |+ ++|. |.|+.| |..+|+++++ +++.+.+..... | ...-++.|.
T Consensus 221 ~~~~~d~-~~s~sK~~~~~----G~r~G~~~~~~~~~~~~~~~~~~-------~---------------~~~~~~~~~-- 271 (390)
T 1d2f_A 221 ARGDWAL-LTSGSKSFNIP----ALTGAYGIIENSSSRDAYLSALK-------G---------------RDGLSSPSV-- 271 (390)
T ss_dssp CCSSEEE-EECSHHHHTCG----GGCCEEEEECSHHHHHHHHHHHH-------T---------------TSCCCSCCH--
T ss_pred chhhHhh-ccCccHhhccc----ChhheEEEECCHHHHHHHHHHHh-------h---------------hcccCCCCH--
Confidence 2 2 77 7787 877532 2336899885 566554410000 0 000011111
Q ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc-CCCeEEcCCCCcceE-EEecC----CHHHHHHHHH-Hc
Q 001989 423 AQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQGLPFFDTV-KVKCA----DAHAIASAAY-KI 495 (985)
Q Consensus 423 ~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~~~~~~~~~-~~~~~----~~~~v~~~L~-~~ 495 (985)
....+..+++ . .+.+.++++.++..++.+++.+.|++ ++++++..+ ..+-+ .+.++ +..++.+.|. ++
T Consensus 272 -~~~~a~~~~l--~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 346 (390)
T 1d2f_A 272 -LALTAHIAAY--Q-QGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIP-QSTYLAWLDLRPLNIDDNALQKALIEQE 346 (390)
T ss_dssp -HHHHHHHHHH--H-HCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCC-SBCSEEEEECGGGCCCHHHHHHHHHHTT
T ss_pred -HHHHHHHHHH--h-cCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecC-CccEEEEEEccccCCCHHHHHHHHHHHc
Confidence 1222222222 2 23456788888899999999999988 633765532 11122 24443 2778999998 57
Q ss_pred Cceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 496 EMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 496 GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
||.+... .++.+|++++. ++++|+++++.|..
T Consensus 347 gi~v~~g~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~ 384 (390)
T 1d2f_A 347 KVAIMPGYTYGEEGRGFVRLNAGC--PRSKLEKGVAGLIN 384 (390)
T ss_dssp CEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred CEEeeCccccCCCCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 9987542 24789999986 57899988888763
No 394
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.55 E-value=4.4e-13 Score=155.25 Aligned_cols=287 Identities=13% Similarity=0.099 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHhC-CCccceecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCcccHHHHH------------
Q 001989 633 MFNNLGEWLCTITG-FDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAA------------ 698 (985)
Q Consensus 633 ~~~e~~~~la~l~G-~~~~~~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv-~~~~Hg~~~~~a~------------ 698 (985)
...+++++++++++ .+ ..++.++|++|+++++.++|.+. ++++||+ ...+|+.......
T Consensus 93 ~~~~l~~~l~~~~~~~~-~v~~~~~g~ea~~~al~~ar~~~------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p 165 (424)
T 2e7u_A 93 LEVALAKKVKRAYPFVD-LVRFVNSGTEATMSALRLARGYT------GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVP 165 (424)
T ss_dssp HHHHHHHHHHHHCTTCC-EEEEESSHHHHHHHHHHHHHHHH------CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEE
T ss_pred HHHHHHHHHHHhCCCCC-EEEEeCCHHHHHHHHHHHHHHhh------CCCEEEEECCCcCCCcHHHHHhcCCcccccCCC
Confidence 45678889999984 32 34667889999888877766552 3456666 4567775443221
Q ss_pred -HCCc------EEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccC----HHHHHHHHHHcCCEEEEE
Q 001989 699 -MCGM------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG----IDEICKIIHDNGGQVYMD 766 (985)
Q Consensus 699 -~~G~------~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~d----i~eI~~la~~~galliVD 766 (985)
..|+ +++.+|. .|+++|+++++++.+++++|+++..+ .+|.+. + +++|.++ +++|+++++|
T Consensus 166 ~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~-~~~~~l~~l~~l-~~~g~~lI~D 238 (424)
T 2e7u_A 166 SSAGVPEEYAKLTLVLEY-----NDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLV-PTEDFLKALHEA-KAYGVLLIAD 238 (424)
T ss_dssp SSTTCCHHHHTTEEEECT-----TCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBC-CCHHHHHHHHHG-GGGTCEEEEE
T ss_pred CCCCCCCccCCceEeCCC-----CCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcC-CCHHHHHHHHHH-HHcCCEEEEe
Confidence 1232 3555664 38999999997432467766664323 378776 5 9999999 9999999999
Q ss_pred ccccccccCCCCCC---c--cCCcEEEeCCcccccccCCCCCCceEEEEEcccccCcCCCCccccCCCCCCCCCCCCCCC
Q 001989 767 GANMNAQVGLTSPG---Y--IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGT 841 (985)
Q Consensus 767 ~a~~~~~~~l~~pg---~--~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~ 841 (985)
++|. ++ .....+ . ..+|++++ +|+|+ +|..+|++++++++.+.+... +. . .
T Consensus 239 Ev~~-g~-~~g~~~~~~~~~~~~di~s~--sK~l~-----~G~~~G~~~~~~~~~~~~~~~--~~-----------~--~ 294 (424)
T 2e7u_A 239 EVMT-GF-RLAFGGATELLGLKPDLVTL--GKILG-----GGLPAAAYAGRREIMEKVAPL--GP-----------V--Y 294 (424)
T ss_dssp CTTT-TT-TSSTTHHHHHHTCCCSEEEE--CGGGG-----TTSSCEEEEECHHHHTTBTTT--SS-----------B--C
T ss_pred cCcc-cc-ccchhHHHHHhCCCcchhhh--hhhhh-----CCcceEEEEEcHHHHhhhccc--CC-----------c--c
Confidence 9985 22 111111 1 23688754 59885 345688999998776655321 00 0 0
Q ss_pred CCCcchhhhHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc---CCe--eecCCCCceeeEEEEEecCccc--
Q 001989 842 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPI--LFRGVNGTVAHEFIVDLRGLKN-- 914 (985)
Q Consensus 842 i~s~~~g~~~~~~~a~a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~g---~~l--~~~~~~~~~~~~~iv~~~~~~~-- 914 (985)
..+++.+++..++++.+.+..+.. ..+..++..+++++++++|++. +++ ...+ .+.+ +.+.+.....
T Consensus 295 ~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~---~~i~~~~~~~~~ 368 (424)
T 2e7u_A 295 QAGTLSGNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNR-VGSM---ITVFFTEGPVVT 368 (424)
T ss_dssp CCCTTCSCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEE-ETTE---EEEESSSSCCCS
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEe-eceE---EEEEEeCCCCcc
Confidence 001112234445555566665543 1234556777888888888652 222 1221 1222 3445431000
Q ss_pred ------cCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHH
Q 001989 915 ------TAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKK 970 (985)
Q Consensus 915 ------~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~ 970 (985)
..+....++.+.|.++||.+..... ..++ ++..+|++||++ +++.|+++
T Consensus 369 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~--~~~~~t~~~i~~--~l~~l~~~ 423 (424)
T 2e7u_A 369 FQDARRTDTELFKRFFHGLLDRGIYWPPSNF---EAAF--LSVAHREEDVEK--TLEALRKA 423 (424)
T ss_dssp HHHHTTSCHHHHHHHHHHHHTTTEECCSSSS---SCEE--CCTTCCHHHHHH--HHHHHHHH
T ss_pred hhhhcccCHHHHHHHHHHHHHCCeEEeccCC---CceE--eeccCCHHHHHH--HHHHHHHh
Confidence 0001245788999999998865432 2344 557899999999 66776654
No 395
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.54 E-value=6.1e-13 Score=153.80 Aligned_cols=329 Identities=12% Similarity=0.106 Sum_probs=197.5
Q ss_pred CHHHHHHHHHHHhcCCCccceecCCCCCC---CCCcHHHHHHHH-----hCCcccccc-CCChhhHhhhHHHHHHHHHHH
Q 001989 149 TESQMIEHMQKLASMNKVYKSFIGMGYYN---THVPPVILRNIM-----ENPAWYTQY-TPYQAEIAQGRLESLLNFQTM 219 (985)
Q Consensus 149 se~e~~~~~~~l~~~n~~~~~~lG~g~y~---~~~p~~v~~~i~-----~~~~~~t~~-~pyq~e~sqg~l~~i~e~q~~ 219 (985)
.+..+.+.+.+++++...+ -++.|..+ ...|+.+.+++. ..+.....| ++. +| +.++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~i--~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~-----~g----~~~lr~~ 78 (423)
T 3ez1_A 10 ALDLARQAYEAFKARGLNL--NMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGV-----AG----LPSARAL 78 (423)
T ss_dssp HHHHHHHHHHHHHHHTCCE--ESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCT-----TC----CHHHHHH
T ss_pred HHHHHHHHHHHhhcCCceE--ecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCC-----CC----hHHHHHH
Confidence 4556778888887665432 23556433 224444433321 112122334 321 11 2357789
Q ss_pred HHHhcCCCCcceeeccchHHHHH--HHHHHhhhhcCC---------CCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 220 IADLTGLPMSNASLLDEGTAAAE--AMAMCNNIQKGK---------KKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 220 ia~L~g~~~~~~sl~~~~ta~~e--a~~~a~~~~~~~---------g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
+|++++.++.++.+++|++.++. .++.++.. ..+ ||+|+++...|+.+...++. .|.+++.++.
T Consensus 79 ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~-~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~ 153 (423)
T 3ez1_A 79 FAGYLDVKAENVLVWNNSSLELQGLVLTFALLH-GVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQT----LGFELLTVDM 153 (423)
T ss_dssp HHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHT-CCTTCSSCGGGGCCEEEEEESCCHHHHHHHHH----HTCEEEEEEE
T ss_pred HHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhc-cCCCccccccCCCCEEEEcCCCcHHHHHHHHH----cCCEEEeccC
Confidence 99999999889999999998775 44444321 003 69999999999999888764 3777776643
Q ss_pred -------hhhhc-c--CCCEeEEEEE-cC-CCCeeeccHH---HHHHHH-HhCCcEEEEEecCccc-cCC----CCC---
Q 001989 289 -------KDIDY-K--SGDVCGVLVQ-YP-GTEGEVLDYG---DFIKNA-HANGVKVVMATDLLAL-TIL----KPP--- 344 (985)
Q Consensus 289 -------~~l~~-l--~~~t~~V~v~-~p-n~~G~v~di~---~I~~~a-~~~galliV~a~~~~l-g~l----~~~--- 344 (985)
++|++ + ++++++|+++ +| |.+|.+.+.+ +|+++| +++|+++++|. ..+. ... ..+
T Consensus 154 ~~~g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De-~y~~~~~~~~~~~~~~~~ 232 (423)
T 3ez1_A 154 QSDGPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADD-AYRVHHLVEEDRAEPVNF 232 (423)
T ss_dssp ETTEECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEEC-TTSSCBCCSSSCCCCCCH
T ss_pred CCCCCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEEC-CcchhhcCCCCCCCCcch
Confidence 56666 6 6789999865 55 7899998766 888888 99999999953 3331 111 111
Q ss_pred -------CcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccccccccccccc
Q 001989 345 -------GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKA 416 (985)
Q Consensus 345 -------~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~a 416 (985)
+..+.+|+++|. |. +. +|..+|++++++++++.+... +.. .
T Consensus 233 ~~~~~~~~~~~~~i~~~S~sK~-~~----~G~r~G~~~~~~~~~~~~~~~-------------------------~~~-~ 281 (423)
T 3ez1_A 233 VVLARDAGYPDRAFVFASTSKI-TF----AGAGLGFVASSEDNIRWLSKY-------------------------LGA-Q 281 (423)
T ss_dssp HHHHHHHTCTTSEEEEEESTTT-SC----SSSSCEEEEECHHHHHHHHHH-------------------------HHH-S
T ss_pred hhhhhccCCCCeEEEEeCchhh-cc----CCcceEEEEeCHHHHHHHHHH-------------------------Hhh-h
Confidence 234677889997 65 33 345689999998877655100 000 0
Q ss_pred CCCccchhHHHHHHHHHHHHH-hC--cchHHHHHHH----HHHHHHHHHHHHhcCC-CeEEcCCCCcceEEEecCC--HH
Q 001989 417 TSNICTAQALLANMAAMYAVY-HG--PEGLKTIAQR----VHGLAGTFALGLKKLG-TVEVQGLPFFDTVKVKCAD--AH 486 (985)
Q Consensus 417 tsni~t~~~l~a~~aa~~l~~-~g--~~Gl~~i~~~----~~~~a~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~--~~ 486 (985)
..+++......+++ ++.. .+ .+-+++..+. ...+.++|.+.|.++| ++++..+....-+.+.+++ ..
T Consensus 282 --~~~~~~~~~~a~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~~~~ 358 (423)
T 3ez1_A 282 --SIGPNKVEQARHVK-FLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEPVAD 358 (423)
T ss_dssp --CSCCCHHHHHHHHH-HHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSSCHH
T ss_pred --ccCCCHHHHHHHHH-HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCCcHH
Confidence 11111111111111 1222 11 1122333333 3334445555565565 4766532211123344443 78
Q ss_pred HHHHHHHHcCceeeee----------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 487 AIASAAYKIEMNLRVV----------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 487 ~v~~~L~~~GI~~~~~----------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++.+.|.++||.+... .++.+|+++... ++++|+++++.|.+
T Consensus 359 ~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~ 410 (423)
T 3ez1_A 359 RVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEEVRTAMQVVAA 410 (423)
T ss_dssp HHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHH
Confidence 8999999999987541 247899999766 99999999999874
No 396
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.54 E-value=9.9e-14 Score=158.39 Aligned_cols=278 Identities=14% Similarity=0.108 Sum_probs=179.4
Q ss_pred HHHHHHHH-HHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch--
Q 001989 213 LLNFQTMI-ADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK-- 289 (985)
Q Consensus 213 i~e~q~~i-a~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~~-- 289 (985)
..++++.+ |+++| ...++.++.+||.++..++.++.. ++||+||++...|+++...++. .|++++.+|++
T Consensus 38 ~~~l~~~~~a~~~g-~~~~~v~~~sgt~al~~al~~l~~--~~Gd~Vi~~~~~~~~~~~~~~~----~G~~~~~v~~~~~ 110 (377)
T 3ju7_A 38 NQRFEQTIMSGFFQ-NRGAVTTVANATLGLMAAIQLKKR--KKGKYALMPSFTFPATPLAAIW----CGLEPYFIDISID 110 (377)
T ss_dssp HHHHHHHHHHHTST-TCSEEEEESCHHHHHHHHHHHHSC--TTCCEEEEESSSCTHHHHHHHH----TTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHhC-CCCeEEEeCCHHHHHHHHHHHcCC--CCcCEEEECCCCcHHHHHHHHH----cCCEEEEEecCCc
Confidence 45678899 99999 233577889999887777666433 3899999999999999888753 58888887653
Q ss_pred -------hhhc-c-CCC--EeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCCcc---cceEEEec
Q 001989 290 -------DIDY-K-SGD--VCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGEL---GADIVVGS 355 (985)
Q Consensus 290 -------~l~~-l-~~~--t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~~~---GaDi~v~s 355 (985)
++++ + +++ |++|++.+ ++|.+.|+++|.++|+ +|+++++|+ .+++|.......+ .+|+.+.|
T Consensus 111 ~~~~d~~~l~~~i~~~~~~tk~v~~~~--~~G~~~~~~~i~~la~-~~~~vi~D~-a~a~g~~~~~~~~g~~~~d~~~~S 186 (377)
T 3ju7_A 111 DWYMDKTVLWDKIEELKEEVAIVVPYA--TFGSWMNLEEYEELEK-KGVPVVVDA-APGFGLMNGGMHYGQDFSGMIIYS 186 (377)
T ss_dssp TCSBCHHHHHHHHHHHGGGEEEECCBC--GGGBCCCCHHHHHHHH-TTCCBEEEC-TTCTTCEETTEETTTTCSSEEEEE
T ss_pred cCCcCHHHHHHHHhcCCCCceEEEEEC--CCCCccCHHHHHHHHh-cCCEEEEEC-CCccCCeECCEeccCCCCcEEEEE
Confidence 4555 5 556 99888544 5899999999999999 999999953 4566643222233 26887776
Q ss_pred --C-ccccccCCCCCCcEEEEEEc-hhhHhcCCC-ceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHH
Q 001989 356 --A-QRFGVPMGYGGPHAAFLATS-QEYKRMMPG-RIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANM 430 (985)
Q Consensus 356 --~-k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~-~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~ 430 (985)
. |.|++ +..|++.++ +++.+++.. +-.|+. .. |. + .+.|. |... ..+ .
T Consensus 187 ~~~~K~l~~------g~gG~~~~~~~~l~~~~~~~~~~g~~----~~--~~--------~--~~~g~-~~~~-~~~---~ 239 (377)
T 3ju7_A 187 FHATKPFGI------GEGGLIYSKNEEDIQRIKRMGNFGFD----TN--RE--------C--TMMGF-NCKM-SEY---A 239 (377)
T ss_dssp CBTTSSSCC------BSCEEEEESCHHHHHHHHHHTBTTBC----TT--SC--------B--CSSCC-BCCC-CHH---H
T ss_pred CCCCCcCCC------CCcEEEEECCHHHHHHHHHHHhcCCC----CC--Cc--------e--eeccc-cCCC-CHH---H
Confidence 3 66642 134666665 444443311 111110 00 00 0 01111 1111 122 2
Q ss_pred HHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEE--cC-C--CCcc-eEEEecCC---HHHHHHHHHHcCceeee
Q 001989 431 AAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEV--QG-L--PFFD-TVKVKCAD---AHAIASAAYKIEMNLRV 501 (985)
Q Consensus 431 aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~--~~-~--~~~~-~~~~~~~~---~~~v~~~L~~~GI~~~~ 501 (985)
|++-+. ..+.++++.++..++++++.+.|++++++.+ .. . .... -+.+..++ .+++.+.|.++||.++.
T Consensus 240 aa~~~~--~l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~~~~ 317 (377)
T 3ju7_A 240 AAIGIA--TMKKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEEVRNKQVIEDLKKQKIEARL 317 (377)
T ss_dssp HHHHHH--HHHTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTTSCHHHHHHHHHTTTBCCBC
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCChhhHHHHHHHHHHCCCceec
Confidence 222111 1256788888889999999999998853322 11 1 1111 23555554 78999999999996532
Q ss_pred ec-------------------------CCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001989 502 VD-------------------------SNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 502 ~~-------------------------~~~lris~t~~~t~edId~li~aL~~~ 530 (985)
.+ ...|++.++...|++|+++++++|..-
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~ 371 (377)
T 3ju7_A 318 YFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQK 371 (377)
T ss_dssp TTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC-
T ss_pred ccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 10 246999999999999999999999854
No 397
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.54 E-value=4.1e-13 Score=155.68 Aligned_cols=276 Identities=11% Similarity=0.061 Sum_probs=181.4
Q ss_pred HHHHHHHHhc-----CCCCcc---eeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcC-CCeEEEE
Q 001989 215 NFQTMIADLT-----GLPMSN---ASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADG-FDIKVVV 285 (985)
Q Consensus 215 e~q~~ia~L~-----g~~~~~---~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~-~gi~v~~ 285 (985)
++++.+|+++ +.++.+ +.+++|+|.+++.++.++. ++||+|+++...|+.+...++ . .|.+++.
T Consensus 92 ~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~---~~gd~Vl~~~p~y~~~~~~~~----~~~g~~~~~ 164 (430)
T 2x5f_A 92 ELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFV---NQDDTILLPEHNWGNYKLVFN----TRNGANLQT 164 (430)
T ss_dssp HHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHC---CTTCEEEEESSCCTHHHHHHT----TTTCCEEEE
T ss_pred HHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHh---CCCCEEEEcCCcCccHHHHHH----HhcCCeEEE
Confidence 4667778877 888778 8899999988887776552 378999999999998877753 4 6888877
Q ss_pred eCc---------hhhhc-cCC---CEeEEEEEcC-CCCeeecc---HHHHHHHHHh-----CCcEEEEEecCccccCC-C
Q 001989 286 SDL---------KDIDY-KSG---DVCGVLVQYP-GTEGEVLD---YGDFIKNAHA-----NGVKVVMATDLLALTIL-K 342 (985)
Q Consensus 286 v~~---------~~l~~-l~~---~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~-----~galliV~a~~~~lg~l-~ 342 (985)
++. ++|++ +++ ++++|++.+| |.+|.+.| +++|+++|++ +|+++++|. ..+.... .
T Consensus 165 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De-~~~~~~~~~ 243 (430)
T 2x5f_A 165 YPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDD-AYYGLFYED 243 (430)
T ss_dssp ECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEEC-TTTTCBCSS
T ss_pred EeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEeh-hcccccCCc
Confidence 754 33444 444 7999999988 67999887 8999999999 999999953 3332111 1
Q ss_pred ---CC-C-c----ccc---eEEEecC-ccccccCCCCCCcEEEEEE---chhhHhcCCCceeeeeecCCCCcceeeeccc
Q 001989 343 ---PP-G-E----LGA---DIVVGSA-QRFGVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQT 406 (985)
Q Consensus 343 ---~~-~-~----~Ga---Di~v~s~-k~lg~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~t 406 (985)
.+ . . .+. +++++|. |.|+.| |-.+|++++ ++++.+.+...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~riG~~~~~~~~~~~~~~l~~~-------------------- 299 (430)
T 2x5f_A 244 VYTQSLFTALTNLHSNAILPIRLDGATKEFFAW----GFRVGFMTFGTSDQTTKEVLEAK-------------------- 299 (430)
T ss_dssp SCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCG----GGCCEEEEEBCCCHHHHHHHHHH--------------------
T ss_pred ccchHHHHHHhhccCCcceEEEEEecccCCCCC----CCCeEEEEEecCCHHHHHHHHHH--------------------
Confidence 11 1 1 344 6778887 777532 223689999 88877655110
Q ss_pred ccccccccccCCCccchhHHHHHHHHHHHH-Hh-CcchHHHHHHHHHHHHHHHHHHHh----cCCCeEEcCCCCcceEEE
Q 001989 407 REQHIRRDKATSNICTAQALLANMAAMYAV-YH-GPEGLKTIAQRVHGLAGTFALGLK----KLGTVEVQGLPFFDTVKV 480 (985)
Q Consensus 407 re~~irre~atsni~t~~~l~a~~aa~~l~-~~-g~~Gl~~i~~~~~~~a~~l~~~L~----~~g~~~~~~~~~~~~~~~ 480 (985)
. ....|. .+.+. +.....++.++ +. .. -.+.++++.++..++.+++.+.|+ +.| +++..+....-+.+
T Consensus 300 ~-~~~~~~-~~~~~-~~~~~~a~~~~--l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g-~~~~~~~~g~~~~~ 373 (430)
T 2x5f_A 300 V-KGLIRS-NISSG-PLPTQSAVKHV--LKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSH-WQAYDFNSGYFMAI 373 (430)
T ss_dssp H-HHHHHT-TTSSC-CHHHHHHHHHH--HHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTT-EEECCCCBSSEEEE
T ss_pred H-hhhhhc-ccCCC-ChHHHHHHHHH--HccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-ceeeCCCceEEEEe
Confidence 0 000110 11111 11112222222 22 10 012344588888899999999998 666 88764321111333
Q ss_pred ecCC--HHHHHHHHHH-cCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 481 KCAD--AHAIASAAYK-IEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 481 ~~~~--~~~v~~~L~~-~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..++ ..++.++|.+ +||.+....++.+|++++. ++++||++++++|.+
T Consensus 374 ~~~~~~~~~~~~~l~~~~gi~v~~g~~~~iRis~~~-~~~e~i~~~~~~l~~ 424 (430)
T 2x5f_A 374 KVHDVDPEALRKHLIDKYSIGVIALNATDIRIAFSC-VEKDDIPHVFDSIAK 424 (430)
T ss_dssp EESSSCHHHHHHHHHHHHCEECEECSSSEEEEEGGG-SCGGGHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCEEEecCCCCeEEEEEec-CCHHHHHHHHHHHHH
Confidence 4443 7889999998 8998876445789999996 599999999999874
No 398
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.53 E-value=1.7e-12 Score=149.01 Aligned_cols=330 Identities=14% Similarity=0.083 Sum_probs=196.0
Q ss_pred HHHHHHHHHHhcC--CCccceecCCCCCCCCCcHHHHHHHHhC------CccccccCCChhhHhhhHHHHHHHHHHHHHH
Q 001989 151 SQMIEHMQKLASM--NKVYKSFIGMGYYNTHVPPVILRNIMEN------PAWYTQYTPYQAEIAQGRLESLLNFQTMIAD 222 (985)
Q Consensus 151 ~e~~~~~~~l~~~--n~~~~~~lG~g~y~~~~p~~v~~~i~~~------~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~ 222 (985)
.++.+.+..+..+ +..+.+ ++.|.++...|+.+.+++.+. +.....|+|. +| ..++++.+|+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~i~-l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~-----~g----~~~lr~~la~ 86 (400)
T 3asa_A 17 ADLQKRVAQFRLENPQHTVIN-LSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPD-----FG----LPALRQKLSE 86 (400)
T ss_dssp HHHHHHHHHHHHHCTTSCCEE-CSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCCT-----TC----CHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcCCCceEe-ccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCC-----CC----CHHHHHHHHH
Confidence 4566666665533 222322 455655555666665444321 1112234331 12 2357788999
Q ss_pred h--cC-CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeE-EEEeCchh---hhc-c
Q 001989 223 L--TG-LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIK-VVVSDLKD---IDY-K 294 (985)
Q Consensus 223 L--~g-~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~-v~~v~~~~---l~~-l 294 (985)
+ .| .++.++.+++|++.+++.+... +. +||+|+++...|+.+...++. .|.+ ++.++.++ +.. +
T Consensus 87 ~l~~g~~~~~~v~~~~G~~~al~~~~~~--~~--~gd~Vl~~~p~y~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~l 158 (400)
T 3asa_A 87 DFYRGFVDAKEIFISDGAKVDLFRLLSF--FG--PNQTVAIQDPSYPAYLDIARL----TGAKEIIALPCLQENAFFPEF 158 (400)
T ss_dssp TTSTTSSCGGGEEEESCHHHHHHHHHHH--HC--SSCEEEEEESCCHHHHHHHHH----TTCSEEEEEECCGGGTTCCCC
T ss_pred HHHcCCCCHHHEEEccChHHHHHHHHHH--cC--CCCEEEECCCCcHHHHHHHHH----cCCcceEecccchhcCcccCh
Confidence 8 57 6777899999999887764322 23 789999999999998877653 4666 66666531 221 2
Q ss_pred C--CCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCcc-ccCC----CCCCcc----cceEEEecC-cc
Q 001989 295 S--GDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLA-LTIL----KPPGEL----GADIVVGSA-QR 358 (985)
Q Consensus 295 ~--~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~-lg~l----~~~~~~----GaDi~v~s~-k~ 358 (985)
. +++++|++++| |.+|.+.+ +++|+++|+++|+++++|. ..+ ++.- .+...+ +.+++++|. |.
T Consensus 159 ~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 237 (400)
T 3asa_A 159 PEDTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDA-AYSTFISDPSLPKSIFEIPDARFCAIEINSFSKP 237 (400)
T ss_dssp CTTCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC-TTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGG
T ss_pred hhccCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEc-hhhhhhcCCCCCCchhhCCCCCCceEEEecchhh
Confidence 2 57899999888 78999876 6788999999999999953 333 3211 111222 245888887 87
Q ss_pred ccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHh
Q 001989 359 FGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYH 438 (985)
Q Consensus 359 lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~ 438 (985)
|+. +|..+|++++++++.+.+. + .+. +-.. ++...+.+-.+..+..+..++ +..
T Consensus 238 ~g~----~GlriG~~~~~~~~~~~~~---------------~--~~~-~~~~-~~~~~~~~~~~~~~~~a~~~~--l~~- 291 (400)
T 3asa_A 238 LGF----AGIRLGWTVIPQELTYADG---------------H--FVI-QDWE-RFLSTTFNGASIPAQEAGVAG--LSI- 291 (400)
T ss_dssp GTT----TTCCCEEEECCTTCBCTTS---------------C--BHH-HHHH-HHHHHHCCCCCHHHHHHHHHH--HHH-
T ss_pred cCC----cchheeEEeeChhhccchh---------------h--hHH-HHHH-HHhccCccCCChHHHHHHHHH--hCc-
Confidence 753 2334689988776532210 0 000 0000 001111100111112222222 222
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEe-cCC---HHHHHHHHHH-cCceeeee------cCCeE
Q 001989 439 GPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVK-CAD---AHAIASAAYK-IEMNLRVV------DSNTV 507 (985)
Q Consensus 439 g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~-~~~---~~~v~~~L~~-~GI~~~~~------~~~~l 507 (985)
+ .++++.++..++.+++.+.|++.| +++..+....-+.+. .+. +.++.+.|.+ +||.+... .++.+
T Consensus 292 ~--~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~i 368 (400)
T 3asa_A 292 L--PQLEAIHYYRENSDLLRKALLATG-FEVFGGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFV 368 (400)
T ss_dssp T--TTCHHHHHHHHHHHHHHHHHHHTT-CEEEECSSSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCE
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHCC-CeeeCCCCceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEE
Confidence 1 467788888899999999999887 887632212224455 442 5577887765 59987542 14689
Q ss_pred EEEeccCCCHHHHHHHHHHHhCC
Q 001989 508 TASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 508 ris~t~~~t~edId~li~aL~~~ 530 (985)
|+++ ++|++||+++++.|+..
T Consensus 369 Ris~--~~~~e~i~~~l~~l~~~ 389 (400)
T 3asa_A 369 RFSS--LGKREDILAACERLQMA 389 (400)
T ss_dssp EEEC--CSCHHHHHHHHHHHHC-
T ss_pred EEEe--eCCHHHHHHHHHHHHHH
Confidence 9994 68999999999999853
No 399
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.52 E-value=4.3e-12 Score=145.27 Aligned_cols=277 Identities=13% Similarity=0.134 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-hh--c-CCCCEEEEcCCCC-hhHHHHHH--------HhhcC
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQ--K-GKKKTFIIASNCH-PQTIDICI--------TRADG 278 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~--~-~~g~~Vlv~~~~H-~s~~~~~~--------~~a~~ 278 (985)
...++++.+++++|. .++.+++|||.++++++.+.+ .. + .++++||+.+..| ......+. .....
T Consensus 79 ~~~~l~~~la~~~~~--~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 156 (395)
T 3nx3_A 79 NIAAAAKNLAKASAL--ERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKP 156 (395)
T ss_dssp HHHHHHHHHHHHHTC--SEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCS
T ss_pred HHHHHHHHHHHhcCC--CeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCC
Confidence 345677899999984 458899999988887775432 20 0 2568888766544 44333321 11122
Q ss_pred CCeEEEEeC---chhhhc-cCCCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecCcc-ccCCCCC---C
Q 001989 279 FDIKVVVSD---LKDIDY-KSGDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLA-LTILKPP---G 345 (985)
Q Consensus 279 ~gi~v~~v~---~~~l~~-l~~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~~-lg~l~~~---~ 345 (985)
.+.++..++ +++|++ +++++++|++..+ |..|.+.+ +++|.++|+++|+++++|. .++ +|..... .
T Consensus 157 ~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De-v~~~~g~~g~~~~~~ 235 (395)
T 3nx3_A 157 LISGVKFAKYNDISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADE-IQCGMGRSGKFFAYE 235 (395)
T ss_dssp CCSCEEEECTTCHHHHHTTCCTTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEEC-TTTTTTTTSSSSGGG
T ss_pred CCCCcEEeCCCCHHHHHHhccCCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEe-cccCCCcCCcchhHH
Confidence 344566654 466777 8888999988764 67888877 9999999999999999953 332 4322111 1
Q ss_pred c--ccceEEEecCccccccCCCCCCcEEEEEEchhh-HhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccc
Q 001989 346 E--LGADIVVGSAQRFGVPMGYGGPHAAFLATSQEY-KRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT 422 (985)
Q Consensus 346 ~--~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~-~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t 422 (985)
. ...|+++. +|+|++ |..+|++.+++++ .+.+.....+ .|.+. +
T Consensus 236 ~~~~~~d~~t~-sK~~~~-----G~~~G~~~~~~~~~~~~~~~~~~~--------------------------~~~~~-~ 282 (395)
T 3nx3_A 236 HAQILPDIMTS-AKALGC-----GLSVGAFVINQKVASNSLEAGDHG--------------------------STYGG-N 282 (395)
T ss_dssp GGTCCCSEEEE-CGGGTT-----TSCCEEEEECHHHHHHHSCTTCCS--------------------------SCBSC-C
T ss_pred hcCCCCCEEEe-cccccC-----CCceEEEEEchhhhhhhcCCcccC--------------------------CCCCC-C
Confidence 2 23576654 388852 3457899999988 7766321111 11111 1
Q ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEcC-CCCcceEEEecC-CHHHHHHHHHHcC
Q 001989 423 AQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQG-LPFFDTVKVKCA-DAHAIASAAYKIE 496 (985)
Q Consensus 423 ~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~~-~~~~~~~~~~~~-~~~~v~~~L~~~G 496 (985)
+.+..+..+++ ..+.. +++.++..++.+++++.|+++ +.+.... ...+-.+.+... .+.++.+.|.++|
T Consensus 283 ~~~~~aa~aal--~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~G 357 (395)
T 3nx3_A 283 PLVCAGVNAVF--EIFKE---EKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFMQGLSLDKSVKVAKVIQKCQENA 357 (395)
T ss_dssp HHHHHHHHHHH--HHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH--HHHHh---hHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeEEEEEEEEeCCcchHHHHHHHHHHCC
Confidence 11222222222 32222 234555566666666666543 2232221 112212333222 2788999999999
Q ss_pred ceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 497 MNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 497 I~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
|.++....+.+|++++..+|++|+|+++++|++
T Consensus 358 i~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~ 390 (395)
T 3nx3_A 358 LLLISCGENDLRFLPPLILQKEHIDEMSEKLRK 390 (395)
T ss_dssp EECEEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 998876678999999999999999999999874
No 400
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.52 E-value=2.8e-13 Score=155.34 Aligned_cols=272 Identities=14% Similarity=0.134 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhc----CCCCEEEEcC-CCChhHHHHHHHhhcCCCeE----
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQK----GKKKTFIIAS-NCHPQTIDICITRADGFDIK---- 282 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~----~~g~~Vlv~~-~~H~s~~~~~~~~a~~~gi~---- 282 (985)
...++++.+++++|. .++.+++|||.++++++.+..... .++++||+.+ ..|.++...++.. |.+
T Consensus 83 ~~~~l~~~la~~~g~--~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~----g~~~~~~ 156 (397)
T 2ord_A 83 PQMELAELLSKNTFG--GKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTAT----GQPKYQK 156 (397)
T ss_dssp HHHHHHHHHHHTTTS--CEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHS----BCHHHHG
T ss_pred HHHHHHHHHHHhcCC--CeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhcc----CChhhcc
Confidence 345677899999985 458889999988887775543100 1346777665 5666666555431 221
Q ss_pred --------EEEe---Cchhhhc-cCCCEeEEEEEcC-CCCeee----ccHHHHHHHHHhCCcEEEEEecCcc-ccCCCCC
Q 001989 283 --------VVVS---DLKDIDY-KSGDVCGVLVQYP-GTEGEV----LDYGDFIKNAHANGVKVVMATDLLA-LTILKPP 344 (985)
Q Consensus 283 --------v~~v---~~~~l~~-l~~~t~~V~v~~p-n~~G~v----~di~~I~~~a~~~galliV~a~~~~-lg~l~~~ 344 (985)
+..+ |+++|++ +++++++|++++| |.+|.+ +++++|.++|+++|+++++| +..+ ++....+
T Consensus 157 ~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~D-e~~~~~~~~g~~ 235 (397)
T 2ord_A 157 PFEPLVPGFEYFEFNNVEDLRRKMSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFD-EVQCGMGRTGKL 235 (397)
T ss_dssp GGCSCCTTEEEECTTCHHHHHHHCCTTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEE-CTTTTTTTTSSS
T ss_pred ccCCCCCCeeEecCCCHHHHHHHhhcCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEE-ecccCCccCccc
Confidence 4444 3466777 7889999999887 789983 68999999999999999995 3333 3211111
Q ss_pred ---Cccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 345 ---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 345 ---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
..+| +|+++. +|+|+. |-.+|++++++++. .+.. +. ...|.+
T Consensus 236 ~~~~~~~~~~d~~s~-sK~~~~-----G~r~G~~~~~~~~~-~l~~----------~~----------------~~~~~~ 282 (397)
T 2ord_A 236 FAYQKYGVVPDVLTT-AKGLGG-----GVPIGAVIVNERAN-VLEP----------GD----------------HGTTFG 282 (397)
T ss_dssp SHHHHHTCCCSEEEE-CGGGGT-----TSCCEEEEECSTTC-CCCT----------TS----------------SCCSST
T ss_pred hhhhhhCCCCCeeee-ccccCC-----CcCeEEEEEchHhc-ccCC----------CC----------------cCCCCC
Confidence 2344 787754 488852 33468888887654 4311 00 001111
Q ss_pred ccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC-CeEEcC--CCCcceEEEecCC---HHHHHHHHH
Q 001989 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG-TVEVQG--LPFFDTVKVKCAD---AHAIASAAY 493 (985)
Q Consensus 420 i~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g-~~~~~~--~~~~~~~~~~~~~---~~~v~~~L~ 493 (985)
. ++....+..++ +..+.. +++.++..++.+++.+.|++++ ++.++. .+...-+.+.+++ ..++.+.|.
T Consensus 283 ~-~~~~~~a~~~~--l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~ 356 (397)
T 2ord_A 283 G-NPLACRAGVTV--IKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEVSNREVATKCF 356 (397)
T ss_dssp T-CHHHHHHHHHH--HHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECTTSCHHHHHHHHH
T ss_pred C-CHHHHHHHHHH--HHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEEEeEEEEEEECChHHHHHHHHHHH
Confidence 1 11122222222 344433 3566777888888888887752 122110 1111223444442 788999999
Q ss_pred HcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 494 KIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 494 ~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++||.+....++.+|++++..+|++|+++++++|.+
T Consensus 357 ~~gi~v~~~~~~~iRis~~~~~~~e~i~~~~~~l~~ 392 (397)
T 2ord_A 357 ENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLKK 392 (397)
T ss_dssp HTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HCCCEEccCCCCEEEEECCcCCCHHHHHHHHHHHHH
Confidence 999988765568899999999999999999999874
No 401
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.51 E-value=2.2e-14 Score=164.55 Aligned_cols=278 Identities=10% Similarity=0.017 Sum_probs=160.9
Q ss_pred HHHHHHHHHhC---C--Cc-cceecCcHH-HHHHHHHHHHHHHHHhcCCCCCC----EEEEcCCCCcccHHHHHHCCcEE
Q 001989 636 NLGEWLCTITG---F--DS-FSLQPNAGA-AGEYAGLMVIRAYHKARGDHHRN----VCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 636 e~~~~la~l~G---~--~~-~~~~~~sGa-~a~~a~l~air~~~~~~g~~~~~----~IIv~~~~Hg~~~~~a~~~G~~v 704 (985)
++++.++++++ . +. ..+..++|+ ++... +++.+. .++| +|+++++.|..+...++..|+++
T Consensus 72 ~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~---~~~~l~-----~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~ 143 (391)
T 3bwn_A 72 ELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQA---AVHALS-----SLARSQPVSVVAAAPFYSTYVEETTYVRSGM 143 (391)
T ss_dssp HHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHH---HHHHHH-----HTSSSSSEEEEECSSCCTHHHHHHHTTCBTT
T ss_pred HHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHH---HHHHhc-----CCCCCCcceEEEcCCCchhHHHHHHHcCCeE
Confidence 45555555554 2 22 345555555 44433 333332 2567 89999998888888888899998
Q ss_pred EEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccc-cCCCCCCcc
Q 001989 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ-VGLTSPGYI 782 (985)
Q Consensus 705 v~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn-~~G~i~~di~eI~~la~~~galliVD~a~~~~~-~~l~~pg~~ 782 (985)
+.+++|.++ ++ . +++++|++++|| ++|.+. + +|++.++++++++++|+++.... ..+. ...
T Consensus 144 ~~~~~d~~~------l~---~---~~~k~v~l~~p~NPtG~~~-~--~l~~~~~~~~~~ii~De~y~~~~~~~l~--~~~ 206 (391)
T 3bwn_A 144 YKWEGDAWG------FD---K---KGPYIELVTSPNNPDGTIR-E--TVVNRPDDDEAKVIHDFAYYWPHYTPIT--RRQ 206 (391)
T ss_dssp EEEEEESTT------CC---C---CSCEEEEEESSCTTTCCCC-C--CCC-----CCCEEEEECTTCSTTTSCCC--CCB
T ss_pred EEecCCHHH------cC---C---CCCEEEEECCCCCCCchhH-H--HHHHHhhcCCCEEEEeCCCCCCCCCccc--cCC
Confidence 888876432 11 1 578899999994 799987 3 56553344459999999985311 1111 134
Q ss_pred CCcEEEeCCcccccccCCCCCCceEEEEE-cccccCcCCCCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHH
Q 001989 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 783 g~Di~~~s~hK~l~~p~g~GGPg~G~i~~-~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~a~l~ 861 (985)
+.++++.|++|+|++| |.++|++++ ++++.+.+.... .....+.+ ..++. ++..+|.
T Consensus 207 ~~~i~~~S~SK~~g~~----GlRiG~~~~~~~~l~~~l~~~~------------~~~~~~~~--~~~q~----a~~~~l~ 264 (391)
T 3bwn_A 207 DHDIMLFTFSKITGHA----GSRIGWALVKDKEVAKKMVEYI------------IVNSIGVS--KESQV----RTAKILN 264 (391)
T ss_dssp CCSEEEEEHHHHHSCG----GGCEEEEEECCHHHHHHHHHHH------------HHHHSSCC--HHHHH----HHHHHHH
T ss_pred CCeEEEEechhhcCCC----ccceEEEEecCHHHHHHHHHHh------------cccccCCC--HHHHH----HHHHHHh
Confidence 5789999999999654 677899998 666654432110 00001111 11121 1223333
Q ss_pred Hhc---------HHHHHHHHHHHHHHHHHHHHHhhccCCeeecCCCCceee-----------EEEEEecCccccCCCCHH
Q 001989 862 MMG---------SKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAH-----------EFIVDLRGLKNTAGIEPE 921 (985)
Q Consensus 862 ~lg---------~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~~~~~~~~~~-----------~~iv~~~~~~~~~g~~~~ 921 (985)
.-. .+.+++..+...++++++.+.|++...+.+..+.+...+ -+.++++ + .+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~------~--~~ 336 (391)
T 3bwn_A 265 VLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTK------E--ET 336 (391)
T ss_dssp HHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEES------S--SC
T ss_pred CcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCC------c--HH
Confidence 210 234566666778888999999986312322211111100 1335553 1 23
Q ss_pred HHHHHHHHCCCccCCC-CCCC-CCEEEEeccCCCCHHHHHHHHccCChhHHHH
Q 001989 922 DVAKRLMDYGFHGPTM-SWPV-PGTLMIEPTESESKSWTGIVMLSSPSEKKLH 972 (985)
Q Consensus 922 ~v~~~L~~~Gi~~~~~-~~p~-~~~lris~t~~~t~eeId~~~~~~~l~~~~~ 972 (985)
.+.+.|.++||.+... .|.. .+++||++. +++++|++ +++.|+++++
T Consensus 337 ~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~--~~~e~i~~--~~~~L~~~~~ 385 (391)
T 3bwn_A 337 DLVSELRRHKVMSRAGERCGSDKKHVRVSML--SREDVFNV--FLERLANMKL 385 (391)
T ss_dssp CHHHHHHHTTEECEEGGGGTCCTTEEEEESC--SCHHHHHH--HHHHHHSCC-
T ss_pred HHHHHHHHCCEEEccCCCCCCCCCEEEEEec--CCHHHHHH--HHHHHHHHHH
Confidence 5667788899987532 2322 579999998 38999999 6666666554
No 402
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.50 E-value=5.5e-13 Score=152.04 Aligned_cols=157 Identities=18% Similarity=0.157 Sum_probs=112.3
Q ss_pred HHHHHHHHHhcCCC-CcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe-Cchhh
Q 001989 214 LNFQTMIADLTGLP-MSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS-DLKDI 291 (985)
Q Consensus 214 ~e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v-~~~~l 291 (985)
.++++.+++++|.+ +.++.++.|||.+++.++.++ +||+|+++...|+.....+. .++..|++++.+ |++++
T Consensus 61 ~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~-----~gd~Vl~~~~~y~~~~~~~~-~~~~~g~~~~~v~d~~~l 134 (374)
T 2aeu_A 61 EKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL-----KPKKVIHYLPELPGHPSIER-SCKIVNAKYFESDKVGEI 134 (374)
T ss_dssp HHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH-----CCSEEEEECSSSSCCTHHHH-HHHHTTCEEEEESCHHHH
T ss_pred HHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC-----CCCEEEEecCCCCccHHHHH-HHHHcCcEEEEeCCHHHH
Confidence 34556678899983 346778899998777666543 78999999986655444332 233467777766 55566
Q ss_pred hccCCCEeE-EEEEcC-CCCe-eeccHHHHHHHHHhCCcEEEEEecCccccC---C-CC-CCcccceEEEecC-cccccc
Q 001989 292 DYKSGDVCG-VLVQYP-GTEG-EVLDYGDFIKNAHANGVKVVMATDLLALTI---L-KP-PGELGADIVVGSA-QRFGVP 362 (985)
Q Consensus 292 ~~l~~~t~~-V~v~~p-n~~G-~v~di~~I~~~a~~~galliV~a~~~~lg~---l-~~-~~~~GaDi~v~s~-k~lg~P 362 (985)
++.++++++ |++.+| |++| .+.|+++|.++||++|+++++|. ..+.+. . .. +..+|+|++++|. |.+
T Consensus 135 ~~~~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l--- 210 (374)
T 2aeu_A 135 LNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDD-ASGARVRLLFNQPPALKLGADLVVTSTDKLM--- 210 (374)
T ss_dssp HTTCCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEEC-TTHHHHHHHTTCCCHHHHTCSEEEEETTSSS---
T ss_pred HhcCCCccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEEC-CcccccccccccCCccccCCcEEEecCcccc---
Confidence 544557899 888888 6788 88999999999999999999954 333322 1 11 3457899999998 654
Q ss_pred CCCCCCcEEEEEEchhhHhcC
Q 001989 363 MGYGGPHAAFLATSQEYKRMM 383 (985)
Q Consensus 363 ~~~GGP~~G~l~~~~~~~~~l 383 (985)
|||.+|++++++++++++
T Consensus 211 ---~g~~~G~~~~~~~~~~~l 228 (374)
T 2aeu_A 211 ---EGPRGGLLAGKKELVDKI 228 (374)
T ss_dssp ---SSCSCEEEEEEHHHHHHH
T ss_pred ---cCcceEEEEECHHHHHHH
Confidence 346779999998887655
No 403
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.50 E-value=1.7e-12 Score=150.47 Aligned_cols=272 Identities=14% Similarity=0.130 Sum_probs=172.5
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHH--HHHHHHhhhhcCC----------CCEEEEcCCCChhHHHHHHHhhcCCCe
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAA--EAMAMCNNIQKGK----------KKTFIIASNCHPQTIDICITRADGFDI 281 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~--ea~~~a~~~~~~~----------g~~Vlv~~~~H~s~~~~~~~~a~~~gi 281 (985)
.++++.+|++++.++.++.+++|++.++ +.+..++. ...+ ||+|+++.-.|+.+...++. .|.
T Consensus 81 ~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~-~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~----~g~ 155 (427)
T 3ppl_A 81 VDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYI-FGNNDSVQPWSKEETVKWICPVPGYDRHFSITER----FGF 155 (427)
T ss_dssp HHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHH-HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHH----TTC
T ss_pred HHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHh-ccCCcccccccCCCCCEEEEcCCCcHHHHHHHHH----cCC
Confidence 4578899999999989999999999877 34444432 1013 89999999999999888754 577
Q ss_pred EEEEeCc-------hhhhc-c-CCCEeEEEEE-cC-CCCeeeccHH---HHHHHH-HhCCcEEEEEecCccccCCC----
Q 001989 282 KVVVSDL-------KDIDY-K-SGDVCGVLVQ-YP-GTEGEVLDYG---DFIKNA-HANGVKVVMATDLLALTILK---- 342 (985)
Q Consensus 282 ~v~~v~~-------~~l~~-l-~~~t~~V~v~-~p-n~~G~v~di~---~I~~~a-~~~galliV~a~~~~lg~l~---- 342 (985)
+++.++. ++|++ + ++++++|+++ +| |.+|.+.+.+ +|+++| +++|+++++|. ..+...+.
T Consensus 156 ~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De-~y~~~~~~~~~~ 234 (427)
T 3ppl_A 156 EMISVPMNEDGPDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDN-AYAVHTLTDEFP 234 (427)
T ss_dssp EEEEEEEETTEECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEEC-TTTTCBSSSCCC
T ss_pred EEEEeCCCCCCCCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEEC-CCcccccCCCCC
Confidence 7777653 45666 6 4789998876 55 8899998776 888888 99999999953 33321111
Q ss_pred C----------CCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccc
Q 001989 343 P----------PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHI 411 (985)
Q Consensus 343 ~----------~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~i 411 (985)
. ++..+.+|+++|. |. +.| |-.+|++.+++++++.+...
T Consensus 235 ~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~----G~r~G~~~~~~~l~~~~~~~------------------------- 284 (427)
T 3ppl_A 235 EVIDIVGLGEAAGNPNRFWAFTSTSKI-TLA----GAGVSFFLTSAENRKWYTGH------------------------- 284 (427)
T ss_dssp CCCCHHHHHHHTTCTTSEEEEEESTTT-SCT----TSSCEEEECCHHHHHHHHHH-------------------------
T ss_pred CccchhhhhhccCCCCcEEEEechhhc-cCc----CccEEEEEcCHHHHHHHHHH-------------------------
Confidence 0 1245678999997 66 433 34579999888877655110
Q ss_pred cccccCCCccchhHHHHHHHHHHHHHhCc-----chHHHHHHHHHHHHHHHHHHH----hcCCCeEEcCCCCcceEEEec
Q 001989 412 RRDKATSNICTAQALLANMAAMYAVYHGP-----EGLKTIAQRVHGLAGTFALGL----KKLGTVEVQGLPFFDTVKVKC 482 (985)
Q Consensus 412 rre~atsni~t~~~l~a~~aa~~l~~~g~-----~Gl~~i~~~~~~~a~~l~~~L----~~~g~~~~~~~~~~~~~~~~~ 482 (985)
+.. ...+++......++ .++.. +-+++..+...++.+++.+.| .++|++++..+....-+.+++
T Consensus 285 ~~~---~~~~~~~~~q~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~ 357 (427)
T 3ppl_A 285 AGI---RGIGPNKVNQLAHA----RYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDV 357 (427)
T ss_dssp HHH---HCSCCCHHHHHHHH----HHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEEC
T ss_pred hhc---ccCCCCHHHHHHHH----HHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEEC
Confidence 000 00111111111111 11211 123344444444444554444 444336654321112244555
Q ss_pred CC--HHHHHHHHHHcCceeee----------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 483 AD--AHAIASAAYKIEMNLRV----------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 ~~--~~~v~~~L~~~GI~~~~----------~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++ ..++.+.|.++||.+.. ...+.+|+|+... ++++|+++++.|.+
T Consensus 358 ~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~ 415 (427)
T 3ppl_A 358 VPGTASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP-PVEELEVAMDGVAT 415 (427)
T ss_dssp STTCHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS-CHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC-CHHHHHHHHHHHHH
Confidence 54 78899999999998754 1247899999655 99999999998874
No 404
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.50 E-value=7.6e-13 Score=154.56 Aligned_cols=275 Identities=13% Similarity=0.104 Sum_probs=171.7
Q ss_pred HHHHHH-HHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHH-HHHH-HhhcCCCeEEEEe--
Q 001989 212 SLLNFQ-TMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTI-DICI-TRADGFDIKVVVS-- 286 (985)
Q Consensus 212 ~i~e~q-~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~-~~~~-~~a~~~gi~v~~v-- 286 (985)
.+.++. +.+++++|++..++ ++.+||.++++++.++. ++||+|++++..|++.. .... ... +.++.++.+
T Consensus 91 ~~e~~a~~~la~~~g~~~~~v-~~~sGs~a~~~a~~~~~---~~Gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~ 165 (447)
T 3h7f_A 91 VVENLARDRAKALFGAEFANV-QPHSGAQANAAVLHALM---SPGERLLGLDLANGGHLTHGMRLNFS-GKLYENGFYGV 165 (447)
T ss_dssp HHHHHHHHHHHHHHTCSEEEC-CCSSHHHHHHHHHHHHC---CTTCEEEEECGGGTCCGGGTCTTSHH-HHSSEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCceEE-EeCCHHHHHHHHHHHhc---CCCCEEEecCcccccccchhhhhhhc-CCeeEEEEcCc
Confidence 334444 89999999987433 36777877777666542 38999999998887621 1110 001 123344333
Q ss_pred -------Cchhhhc-cC-CCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecCcccc-----CCCCCCcccceEE
Q 001989 287 -------DLKDIDY-KS-GDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALT-----ILKPPGELGADIV 352 (985)
Q Consensus 287 -------~~~~l~~-l~-~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~a~~~~lg-----~l~~~~~~GaDi~ 352 (985)
|++++++ +. .++++|++.+|++ +...|+++|.++|+++|+++++|. .++.| ....+. .++|++
T Consensus 166 ~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~-~~~~~l~~i~~l~~~~g~lli~De-a~~~g~~~~g~~~~~~-~~~di~ 242 (447)
T 3h7f_A 166 DPATHLIDMDAVRATALEFRPKVIIAGWSAY-PRVLDFAAFRSIADEVGAKLLVDM-AHFAGLVAAGLHPSPV-PHADVV 242 (447)
T ss_dssp CTTTCSCCHHHHHHHHHHHCCSEEEEECSSC-CSCCCHHHHHHHHHHHTCEEEEEC-TTTHHHHHTTSSCCST-TTCSEE
T ss_pred CcccCCcCHHHHHHHHHhcCCeEEEEcCCCC-CCccCHHHHHHHHHHcCCEEEEEC-CchhhhhcCCCCCCCC-CCCcEE
Confidence 3356665 53 4577788776643 233399999999999999999953 33332 222222 368999
Q ss_pred EecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHH
Q 001989 353 VGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMA 431 (985)
Q Consensus 353 v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~a 431 (985)
+.+. |+|+ ||-.|++++++++.+.+.... .. + ..++++. ....+..+
T Consensus 243 ~~s~sK~l~------G~~gG~i~~~~~~~~~l~~~~---------~~-~-------------~~~~~~~---~~~~a~~~ 290 (447)
T 3h7f_A 243 STTVHKTLG------GGRSGLIVGKQQYAKAINSAV---------FP-G-------------QQGGPLM---HVIAGKAV 290 (447)
T ss_dssp EEESSGGGC------CCSCEEEEECGGGHHHHHHHH---------TT-T-------------TCSSCCH---HHHHHHHH
T ss_pred EecCCcCCC------CCCeEEEEECHHHHHHHhhhc---------CC-c-------------ccCCccH---HHHHHHHH
Confidence 9997 7764 454589988887665541100 00 0 0112221 22333333
Q ss_pred HHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC-----CCeEEcCC-CCcceEEEecC--C--HHHHHHHHHHcCceee-
Q 001989 432 AMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL-----GTVEVQGL-PFFDTVKVKCA--D--AHAIASAAYKIEMNLR- 500 (985)
Q Consensus 432 a~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~-----g~~~~~~~-~~~~~~~~~~~--~--~~~v~~~L~~~GI~~~- 500 (985)
++ ..+..++++++.++..++++++.+.|++. | ++++.. ...+.+.+.+. + ...+.+.|.++||.+.
T Consensus 291 a~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~ 367 (447)
T 3h7f_A 291 AL--KIAATPEFADRQRRTLSGARIIADRLMAPDVAKAG-VSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNR 367 (447)
T ss_dssp HH--HHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTT-CEEGGGSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC
T ss_pred HH--HHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCC-eEEecCCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEec
Confidence 33 34445578899999999999999999988 7 888642 22223444443 2 6677777888899876
Q ss_pred ---ee------cCCeEEEEeccC----CCHHHHHHHHHHHhC
Q 001989 501 ---VV------DSNTVTASFDET----TTLEDVDKLFIVFAG 529 (985)
Q Consensus 501 ---~~------~~~~lris~t~~----~t~edId~li~aL~~ 529 (985)
.. .++.+|+++... .|++|+++++++|.+
T Consensus 368 ~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~ 409 (447)
T 3h7f_A 368 NAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIAT 409 (447)
T ss_dssp -------------CEEEEECHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHH
Confidence 22 246799988664 578999999998874
No 405
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.50 E-value=1.7e-12 Score=149.88 Aligned_cols=329 Identities=13% Similarity=0.049 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHhcC--CCccceecCCCCC-----CCCCcHHHHHHHHhCCc-cccccCCChhhHhhhHHHHHHHHHHHHH
Q 001989 150 ESQMIEHMQKLASM--NKVYKSFIGMGYY-----NTHVPPVILRNIMENPA-WYTQYTPYQAEIAQGRLESLLNFQTMIA 221 (985)
Q Consensus 150 e~e~~~~~~~l~~~--n~~~~~~lG~g~y-----~~~~p~~v~~~i~~~~~-~~t~~~pyq~e~sqg~l~~i~e~q~~ia 221 (985)
-.++.+.++++..+ +... --+|.|.| +...|+.+.+++..... ....|+|. +|. .++++.++
T Consensus 21 ~~~~~~~~~~~~~~~g~~~~-i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~-----~g~----~~lr~~ia 90 (418)
T 3rq1_A 21 IFVTAGQAQADAKENGRENV-VNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPI-----AGI----PDFLCAAE 90 (418)
T ss_dssp HHHHHHHHHHHHHHHCGGGC-EECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCT-----TCC----HHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcCCCe-EECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCC-----CCh----HHHHHHHH
Confidence 34555555555443 2222 23467765 55677777655443221 13345543 222 23445555
Q ss_pred Hhc----CCC-CcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------
Q 001989 222 DLT----GLP-MSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-------- 288 (985)
Q Consensus 222 ~L~----g~~-~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-------- 288 (985)
+++ +.+ ..++.+++|+|.+++.++.++ . ++||+|+++...|+.+...++. .|.+++.++.
T Consensus 91 ~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-~--~~gd~Vl~~~p~~~~~~~~~~~----~g~~~~~v~~~~~~~~~d 163 (418)
T 3rq1_A 91 KECFGNFRPEGHIRSIATAGGTGGIHHLIHNY-T--EPGDEVLTADWYWGAYRVICSD----TGRTLVTYSLFDEHNNFN 163 (418)
T ss_dssp HHHHGGGCCSSEEEEEEESHHHHHHHHHHHHH-S--CTTCEEEEESSCCTHHHHHHHH----TTCEEEEECSBCTTSSBC
T ss_pred HHHhcccCccccccEEECCchHHHHHHHHHHh-c--CCCCEEEECCCCchhHHHHHHH----cCCEEEEEeeeCCCCCcC
Confidence 543 433 116888999998888776654 2 3899999999999998887653 5888888764
Q ss_pred -hhhhc-cCC----CEe-EEEEEcC--CCCeeeccHHHHH---HHHH------hCCcEEEEEecCc-cccCC--------
Q 001989 289 -KDIDY-KSG----DVC-GVLVQYP--GTEGEVLDYGDFI---KNAH------ANGVKVVMATDLL-ALTIL-------- 341 (985)
Q Consensus 289 -~~l~~-l~~----~t~-~V~v~~p--n~~G~v~di~~I~---~~a~------~~galliV~a~~~-~lg~l-------- 341 (985)
+++++ +.+ +++ ++++.+| |++|.+.|.+++. ++|+ ++|+++++|. .. .++.-
T Consensus 164 ~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De-~y~~~~~~~~~~~~~~ 242 (418)
T 3rq1_A 164 HEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDV-AYLDYSGEKDEVRAFF 242 (418)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEEC-TTGGGSSCHHHHHGGG
T ss_pred HHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEec-ccccccCChHHHHHHH
Confidence 23444 442 455 7778877 7899998755554 5555 8999999953 32 22110
Q ss_pred CCCCcccce---EEEecC-ccccccCCCCCCcEEEEEE---chhhHhcCCCceeeeeecCCCCcceeeeccccccccccc
Q 001989 342 KPPGELGAD---IVVGSA-QRFGVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRD 414 (985)
Q Consensus 342 ~~~~~~GaD---i~v~s~-k~lg~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre 414 (985)
.....++-| |+++|. |.|+.| |-.+|++.+ ++++++.+... + ++..+.
T Consensus 243 ~~~~~~~~~~~~i~~~S~sK~~~~~----G~r~G~~~~~~~~~~~~~~~~~~--------------------~-~~~~~~ 297 (418)
T 3rq1_A 243 NKFSHLPKEILTCVCYSLSKGFTMY----GQRVGAMIGISDDEEIADEFFEV--------------------N-KSTSRA 297 (418)
T ss_dssp GGGTTCCTTEEEEEEEESTTTTTCC----SSCCEEEEEEESSHHHHHHHHHH--------------------H-HHHHHH
T ss_pred HHHHhcCCCceEEEEEeCCCCCcCc----CCcceEEEEEeCCHHHHHHHHHH--------------------H-HHHHhh
Confidence 001112234 677776 877533 234688887 77777655100 0 000000
Q ss_pred ccCCCccchhHHHHHHHHHHHHHh-----CcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceE-EEecCCHHHH
Q 001989 415 KATSNICTAQALLANMAAMYAVYH-----GPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTV-KVKCADAHAI 488 (985)
Q Consensus 415 ~atsni~t~~~l~a~~aa~~l~~~-----g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~-~~~~~~~~~v 488 (985)
.+++.. ..+..++.+.+ ... -.+.++++.++..++.+++.+.|+++| +++..+. ..-+ .+..++..++
T Consensus 298 -~~~~~~-~~~~~a~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~-~~~~~~~~~~~~~~~ 371 (418)
T 3rq1_A 298 -TWSNIC-RPAMRTMANIV--ADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVG-LPMLPYR-GGFFITIPTDSANAI 371 (418)
T ss_dssp -HTSSCC-HHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCCCCCC-SSSEEEEECTTHHHH
T ss_pred -ccCCCc-hHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCC-ceEEEEcCCCCHHHH
Confidence 001111 11111111111 100 012344666778888899999999886 7765321 1112 2344457889
Q ss_pred HHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 489 ASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 489 ~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.|.++||.+... ++.+|+|++ ..|+++|+++++.|.+
T Consensus 372 ~~~l~~~gi~v~~g-~~~iRis~~-~~~~~~i~~~~~~l~~ 410 (418)
T 3rq1_A 372 CEELKKEHIYVIAL-ANGIRIAAC-GIPKCQMTGLAEKIYN 410 (418)
T ss_dssp HHHHHHTTEECEEC-SSEEEEEGG-GSCHHHHTTHHHHHHH
T ss_pred HHHHHhCCEEEecC-CCCeEEEEe-cCCHHHHHHHHHHHHH
Confidence 99999999988763 578999977 5699999999998874
No 406
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.48 E-value=5.5e-12 Score=145.24 Aligned_cols=274 Identities=9% Similarity=0.008 Sum_probs=165.6
Q ss_pred HHHHHHHHHhc------CCCCcceeeccchHHHHHHHHHHhhhhcCCCC-----EEEEc-CCCChhHHHHHHHh--hcCC
Q 001989 214 LNFQTMIADLT------GLPMSNASLLDEGTAAAEAMAMCNNIQKGKKK-----TFIIA-SNCHPQTIDICITR--ADGF 279 (985)
Q Consensus 214 ~e~q~~ia~L~------g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~-----~Vlv~-~~~H~s~~~~~~~~--a~~~ 279 (985)
.++++.+|+++ +.++.++.+++|+|.+++.++.++. ++|| +|+++ .-.|+.+...+... ....
T Consensus 78 ~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~---~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~ 154 (417)
T 3g7q_A 78 TALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFA---GRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSA 154 (417)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS---BC----CCBEEEESSCCCHHHHHC-----CCEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHc---CCCccCCcceEEEeCCCccccchhhccchhhhccc
Confidence 34667777776 5677899999999988877766542 2555 89998 77888777665321 1233
Q ss_pred CeEEEEeC---------chhhhccCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCcccc-----CC
Q 001989 280 DIKVVVSD---------LKDIDYKSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALT-----IL 341 (985)
Q Consensus 280 gi~v~~v~---------~~~l~~l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg-----~l 341 (985)
+..+..++ +++++ +++++++|++.+| |.+|.+.+ +++|+++|+++|+++++|. ..+.. ..
T Consensus 155 ~~~~~~~~~~~~~~~~d~~~l~-~~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De-~~~~~~~~~~~~ 232 (417)
T 3g7q_A 155 RPNIELLPEGQFKYHVDFEHLH-IGEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDN-AYGVPFPGIIFS 232 (417)
T ss_dssp CCEEEEEGGGEEEEECCGGGCC-CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEEC-TTCTTTTCCBCS
T ss_pred cCcccccCCcccccccCHHHhc-cccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeC-CCcccccccccc
Confidence 45555443 33344 5778999999998 78999987 8999999999999999953 33321 11
Q ss_pred -CCCCcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 342 -KPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 342 -~~~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
..+...+.+|+++|. | ++.| |-.+|++++++++.+.+... . +. .+
T Consensus 233 ~~~~~~~~~~i~~~s~sK-~~~~----G~r~G~~~~~~~~~~~~~~~----------~---------------~~---~~ 279 (417)
T 3g7q_A 233 EARPLWNPNIILCMSLSK-LGLP----GSRCGIIIANDKTITAIANM----------N---------------GI---IS 279 (417)
T ss_dssp CCCCCCCTTEEEEEESGG-GTCT----TSCCEEEECCHHHHHHHHHH----------H---------------HH---HC
T ss_pred ccccCCCCCEEEEEechh-ccCC----CcceEEEEeCHHHHHHHHHh----------h---------------cc---ee
Confidence 123346788999997 6 5432 33478998888877655110 0 00 01
Q ss_pred ccchhHHHHHHHHHHHHHhCcc-hHHH-HHHHHHHHHHHHHHHHhc----CCCeEEcCCCCcceEEEecC--C--HHHHH
Q 001989 420 ICTAQALLANMAAMYAVYHGPE-GLKT-IAQRVHGLAGTFALGLKK----LGTVEVQGLPFFDTVKVKCA--D--AHAIA 489 (985)
Q Consensus 420 i~t~~~l~a~~aa~~l~~~g~~-Gl~~-i~~~~~~~a~~l~~~L~~----~g~~~~~~~~~~~~~~~~~~--~--~~~v~ 489 (985)
.+++......+++ ++...... -+++ +.++..++.+++.+.|.+ +| +++..+....-+.+.++ + ..++.
T Consensus 280 ~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~l~ 357 (417)
T 3g7q_A 280 LAPGGMGPAMMCE-MIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEER-CLIHKPEGAIFLWLWFKDLPITTELLY 357 (417)
T ss_dssp CCCCSHHHHHHHH-HHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTT-CEEECCCBSSEEEEECTTCSSCHHHHH
T ss_pred eCCCcHHHHHHHH-HHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-ceeeCCCcceEEEEEcCCCCCCHHHHH
Confidence 1111111111111 12211100 1112 444555566666666655 24 66653221112334443 2 78999
Q ss_pred HHHHHcCceeeee---c----------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 490 SAAYKIEMNLRVV---D----------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 490 ~~L~~~GI~~~~~---~----------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.|.++||.+... . .+.+|+|++. |++||+++++.|.+
T Consensus 358 ~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~ 408 (417)
T 3g7q_A 358 QRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--EPDKIEAGVKILAE 408 (417)
T ss_dssp HHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--CHHHHHHHHHHHHH
T ss_pred HHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 9999999987542 1 3589999985 99999999999874
No 407
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.47 E-value=9.9e-13 Score=152.57 Aligned_cols=220 Identities=15% Similarity=0.114 Sum_probs=149.3
Q ss_pred HHHHHHHHHHhcCCCCccee-eccchHHHHHHHHHHhhhhcCCCCEEEEcC-CCChhHHHHHH------HhhcCCCeEEE
Q 001989 213 LLNFQTMIADLTGLPMSNAS-LLDEGTAAAEAMAMCNNIQKGKKKTFIIAS-NCHPQTIDICI------TRADGFDIKVV 284 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~s-l~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~-~~H~s~~~~~~------~~a~~~gi~v~ 284 (985)
..++++.+++++|.+.+.+. ++.+||+++++++.++ . ++||+|++++ ..|+++...+. ..++..|++++
T Consensus 67 ~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al-~--~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~ 143 (431)
T 3ht4_A 67 RDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGI-L--RPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYN 143 (431)
T ss_dssp HHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTT-C--CTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEE
T ss_pred HHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHh-C--CCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEE
Confidence 45677899999999875331 2457887777766554 2 3899999998 89998887763 22345799999
Q ss_pred EeCc--------hhhhc-cCCCEeEEEEEc----C-CCCeeeccHHHHHHHHHh--CCcEEEEEecCccccCC-CCCCcc
Q 001989 285 VSDL--------KDIDY-KSGDVCGVLVQY----P-GTEGEVLDYGDFIKNAHA--NGVKVVMATDLLALTIL-KPPGEL 347 (985)
Q Consensus 285 ~v~~--------~~l~~-l~~~t~~V~v~~----p-n~~G~v~di~~I~~~a~~--~galliV~a~~~~lg~l-~~~~~~ 347 (985)
.++. ++|++ ++++|++|++++ | +.+|.+.|+++|+++||+ +|++++|| +.++.+.. ..|.++
T Consensus 144 ~v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livD-ea~~~~~~~~~~~~~ 222 (431)
T 3ht4_A 144 AVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVD-NCYGEFIEEQEPCHV 222 (431)
T ss_dssp ECCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEE-CTTCTTSSSCCGGGT
T ss_pred EeCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEe-CCChhhccCCCcccc
Confidence 8865 35666 888999999986 4 567888999999999999 99999995 34454442 456788
Q ss_pred cceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHH
Q 001989 348 GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQAL 426 (985)
Q Consensus 348 GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l 426 (985)
|+|++++|. |.|++. ++|..|++++++++++++..+... .+ + ....+.+.. ..
T Consensus 223 g~Di~~~S~sK~lgg~---~~~~GG~v~~~~~li~~l~~~~~~-----~~---~-----------g~~~~~~~~----~~ 276 (431)
T 3ht4_A 223 GADLMAGSLIKNPGGG---IVKTGGYIVGKEQYVEACAYRLTS-----PG---I-----------GAEAGASLY----SL 276 (431)
T ss_dssp TCSEEEEETTSGGGTT---TCSSCEEEEECHHHHHHHHHHHSC-----TT---T-----------TTSCSCCCS----CS
T ss_pred CCeEEEcCccccCCCC---CCCceEEEEecHHHHHHHHHHhcc-----CC---c-----------ccccCccHH----HH
Confidence 999999998 888642 223339999999887665211100 00 0 000111110 01
Q ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc
Q 001989 427 LANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ 470 (985)
Q Consensus 427 ~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~ 470 (985)
+.+..++ +.+..+.++..+++.++++.|+++| +++.
T Consensus 277 ~~~~~~l-------~~~~~~~~~~~~~a~~l~~~L~~~g-~~v~ 312 (431)
T 3ht4_A 277 QEMYQGF-------FLAPHVAGQALKGAIFTAAFLEKLG-MNTS 312 (431)
T ss_dssp HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHT-CCEE
T ss_pred HHHHhHh-------hhHHHHHHHHHHHHHHHHHHHHhCc-CEec
Confidence 1111111 2345677888899999999999988 6653
No 408
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.46 E-value=3.6e-12 Score=146.87 Aligned_cols=326 Identities=12% Similarity=0.092 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHhcC--CCccceecCCCCC-----CCCCcHHHHHHHHhCCc-cccccCCChhhHhhhHHHHHHHHHHHHH
Q 001989 150 ESQMIEHMQKLASM--NKVYKSFIGMGYY-----NTHVPPVILRNIMENPA-WYTQYTPYQAEIAQGRLESLLNFQTMIA 221 (985)
Q Consensus 150 e~e~~~~~~~l~~~--n~~~~~~lG~g~y-----~~~~p~~v~~~i~~~~~-~~t~~~pyq~e~sqg~l~~i~e~q~~ia 221 (985)
-.++.+..+++..+ +.... -++.|.| +...|+.+.+++..... ....|+|. +|.. ++++.++
T Consensus 20 ~~~~~~~~~~~~~~~g~~~~i-~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~Y~~~-----~g~~----~lr~~la 89 (413)
T 3t18_A 20 AFDINNKANAAIEKYGREAVI-NAALGTLLDDKGKIIALPSVYDRLDEMDRSHIASYAPI-----EGEK----DYRKIVI 89 (413)
T ss_dssp HHHHHHHHHHHHHHHCGGGCE-ECCSCCCBCTTSCBCCCHHHHHHHHHSCHHHHHSCCCT-----TCCH----HHHHHHH
T ss_pred HHHHHHHHhhhhhhccccceE-eccccCccCCCCCcCChHHHHHHHHhcCcccccCcCCC-----CCCH----HHHHHHH
Confidence 34555555555443 22222 2356655 44577777655444221 23345442 2222 2344444
Q ss_pred Hh----cCCC-CcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------
Q 001989 222 DL----TGLP-MSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-------- 288 (985)
Q Consensus 222 ~L----~g~~-~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-------- 288 (985)
+. .+.+ ..++.+++|+|.+++.++.++ . ++||+|+++...|+.+...++. .|.+++.++.
T Consensus 90 ~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~~-~--~~gd~Vl~~~p~~~~~~~~~~~----~g~~~~~~~~~~~~~~~d 162 (413)
T 3t18_A 90 DTLFGPYKPEGYISAIATPGGTGAIRSAIFSY-L--DEGDPLICHDYYWAPYRKICEE----FGRNFKTFEFFTDDFAFN 162 (413)
T ss_dssp HHHHGGGCCSSEEEEEEESHHHHHHHHHHHHH-C--CSSCEEEEESSCCTHHHHHHHH----HTCEEEEECCBCTTSSBC
T ss_pred HHHhcccCccccCcEEEcCccHHHHHHHHHHh-c--CCCCEEEECCCCcccHHHHHHH----hCCeEEEeeccCCCCCcC
Confidence 43 3322 227889999998887776654 2 3899999999999999888754 4778877764
Q ss_pred -hhhhc-cCC----CEe-EEEEEcC--CCCeeeccHHHHH---HHHH------hCCcEEEEEecCccccCCCC-C-----
Q 001989 289 -KDIDY-KSG----DVC-GVLVQYP--GTEGEVLDYGDFI---KNAH------ANGVKVVMATDLLALTILKP-P----- 344 (985)
Q Consensus 289 -~~l~~-l~~----~t~-~V~v~~p--n~~G~v~di~~I~---~~a~------~~galliV~a~~~~lg~l~~-~----- 344 (985)
++|++ +.+ +++ ++++.+| |++|.+.|.+++. ++|+ ++|+++++|.-...++.... .
T Consensus 163 ~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~ 242 (413)
T 3t18_A 163 IDVYKEAIDEGIRDSDRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFE 242 (413)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGG
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHH
Confidence 34544 443 566 6777877 7899998765555 5555 89999999532122221111 0
Q ss_pred --Ccccce---EEEecC-ccccccCCCCCCcEEEEEE---chhhHhcCCCceeeeeecCCCCcceeeecccccccccccc
Q 001989 345 --GELGAD---IVVGSA-QRFGVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDK 415 (985)
Q Consensus 345 --~~~GaD---i~v~s~-k~lg~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~ 415 (985)
..++-| |+++|. |.|+.| |-.+|++.+ ++++.+.+... + +...+ .
T Consensus 243 ~~~~~~~~~~~i~~~S~sK~~~~~----G~riG~~~~~~~~~~~~~~~~~~--------------------~-~~~~~-~ 296 (413)
T 3t18_A 243 KFSNLPRNLFVVVAFSMSKSHTAY----GLRSGAAVGISSSKEIIEEFEAS--------------------L-AHSAR-C 296 (413)
T ss_dssp GGTTCCTTEEEEEEEEHHHHTTCG----GGCCEEEEEEESCHHHHHHHHHH--------------------H-HHHHH-H
T ss_pred HHhhcCCCeeEEEEEecCccCCCc----CcCcEEEEEecCCHHHHHHHHHH--------------------H-HHhhh-c
Confidence 112223 677776 877543 223688888 77777655100 0 00000 0
Q ss_pred cCCCccchhHHHHHHHHHHHHHhCc-------chHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC--CCcceEEEecCCHH
Q 001989 416 ATSNICTAQALLANMAAMYAVYHGP-------EGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL--PFFDTVKVKCADAH 486 (985)
Q Consensus 416 atsni~t~~~l~a~~aa~~l~~~g~-------~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~~~~~~~~~~~~ 486 (985)
.+++. +.+ +..++. ..+.. +.++++.++..++.+++.+.|+++| +++..+ .++ +.+...+..
T Consensus 297 ~~~~~---~~~-~~~a~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~~~~--~~~~~~~~~ 367 (413)
T 3t18_A 297 NWSNG---THA-AQNILI--ELERAENKKIYEQELVDLRNMLKSRADVFVTAAKENK-LTMIPYFGGFF--TFIPTDKAF 367 (413)
T ss_dssp HTSSC---CHH-HHHHHH--HTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCBCCCSSSC--EEEECSCHH
T ss_pred cccCC---ChH-HHHHHH--HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCccCCCceEE--EEeCCCCHH
Confidence 01111 111 111211 11211 2345667778888999999999987 776532 222 223344488
Q ss_pred HHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 487 AIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 487 ~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
++.+.|.++||.+... ++.+|++++..++++.+++|.++|.
T Consensus 368 ~~~~~l~~~gv~v~~g-~~~iRis~~~~~~~~~l~~l~~~l~ 408 (413)
T 3t18_A 368 DIVKDLEKENIFTIPS-AKGIRVAICGVGEEKIPKLVQRLAF 408 (413)
T ss_dssp HHHHHHHHTTEECEEC-SSEEEECTTTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEecC-CCceEEEEeeCCHHHHHHHHHHHHH
Confidence 8999999999988763 5789999986666666777766664
No 409
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.46 E-value=5.2e-12 Score=147.15 Aligned_cols=274 Identities=14% Similarity=0.110 Sum_probs=169.2
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-h--h-c--CCC-CEEEEcC-CCChhHHHHHHHhhc------C
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-I--Q-K--GKK-KTFIIAS-NCHPQTIDICITRAD------G 278 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~--~-~--~~g-~~Vlv~~-~~H~s~~~~~~~~a~------~ 278 (985)
..++++.+++++|.+ ++.+++||+.++++++.+.+ + + + .+| ++||+.+ ..|.++...+.. .. .
T Consensus 120 ~~~l~~~la~~~g~~--~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~-~g~~~~~~~ 196 (439)
T 2oat_A 120 LGEYEEYITKLFNYH--KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISS-STDPTSYDG 196 (439)
T ss_dssp HHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTT-CCCHHHHTT
T ss_pred HHHHHHHHHHhcCCC--EEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhc-CCChhcccC
Confidence 345667889999854 58888999988887775432 1 1 0 134 7888776 556666555431 11 0
Q ss_pred C---CeEEEEe---Cchhhhc-c-CCCEeEEEEEcC-CCCeeec----cHHHHHHHHHhCCcEEEEEecCc-cccCCCCC
Q 001989 279 F---DIKVVVS---DLKDIDY-K-SGDVCGVLVQYP-GTEGEVL----DYGDFIKNAHANGVKVVMATDLL-ALTILKPP 344 (985)
Q Consensus 279 ~---gi~v~~v---~~~~l~~-l-~~~t~~V~v~~p-n~~G~v~----di~~I~~~a~~~galliV~a~~~-~lg~l~~~ 344 (985)
+ ...+..+ |+++|++ + ++++++|++... +..|.+. ++++|.++|+++|+++++| +.+ .+|-....
T Consensus 197 ~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~D-Ev~~g~g~~g~~ 275 (439)
T 2oat_A 197 FGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIAD-EIQTGLARTGRW 275 (439)
T ss_dssp SCSCCTTEEEECSSCHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEE-CTTTTTTTTSSS
T ss_pred CCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe-ccccCCccCCcc
Confidence 1 1334444 4467777 7 578888877543 4579776 8999999999999999995 333 23321111
Q ss_pred ---Ccc--cceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 345 ---GEL--GADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 345 ---~~~--GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
..+ ..|+++. +|+|++ |.-.+|++++++++.+.+... .. ..|.
T Consensus 276 ~~~~~~~~~~Di~t~-sK~l~~----G~~~~G~v~~~~~~~~~l~~~----------~~----------------~~t~- 323 (439)
T 2oat_A 276 LAVDYENVRPDIVLL-GKALSG----GLYPVSAVLCDDDIMLTIKPG----------EH----------------GSTY- 323 (439)
T ss_dssp SGGGGGTCCCSEEEE-CGGGGT----TSSCCEEEEECHHHHTTSCTT----------SS----------------CCSS-
T ss_pred hhHHHhCCCCcEEEe-cccccC----CCCCeEEEEECHHHHhccCCC----------Cc----------------ccCC-
Confidence 123 3687632 487752 201268899999887766321 00 0111
Q ss_pred ccchhH-HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc----CCCCcceEEEecC--C-HHHHHHH
Q 001989 420 ICTAQA-LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ----GLPFFDTVKVKCA--D-AHAIASA 491 (985)
Q Consensus 420 i~t~~~-l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~----~~~~~~~~~~~~~--~-~~~v~~~ 491 (985)
+.+.. ..+..++ +..+..+ ++.++..++.++++++|++++ +.++ +...+-.+.+... . +.++.+.
T Consensus 324 -~~~~~~~aaa~aa--l~~~~~~---~~~~~~~~~~~~l~~~L~~l~-~~~~~~~~~~g~~~~v~l~~~~~~~~~~l~~~ 396 (439)
T 2oat_A 324 -GGNPLGCRVAIAA--LEVLEEE---NLAENADKLGIILRNELMKLP-SDVVTAVRGKGLLNAIVIKETKDWDAWKVCLR 396 (439)
T ss_dssp -TTCHHHHHHHHHH--HHHHHHT---THHHHHHHHHHHHHHHHTTSC-TTTEEEEEEETTEEEEEECCCSSCCHHHHHHH
T ss_pred -CcCHHHHHHHHHH--HHHHhhh---hHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeeeEEEEEEecCccHHHHHHHHH
Confidence 11111 1122222 2333222 466778889999999999874 3321 1111212333222 2 7789999
Q ss_pred HHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 492 AYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 492 L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
|.++||.+....++.+|++++..+|++|||+++++|.+
T Consensus 397 l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~ 434 (439)
T 2oat_A 397 LRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINK 434 (439)
T ss_dssp HHHTTEECCBSSSSEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHCCeEEecCCCCEEEEECccCCCHHHHHHHHHHHHH
Confidence 99999998765568899999999999999999999874
No 410
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.45 E-value=9.8e-12 Score=144.00 Aligned_cols=278 Identities=13% Similarity=0.042 Sum_probs=174.2
Q ss_pred hHHHHHHHHHHHHHHhcCCCC---------cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcC
Q 001989 208 GRLESLLNFQTMIADLTGLPM---------SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADG 278 (985)
Q Consensus 208 g~l~~i~e~q~~ia~L~g~~~---------~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~ 278 (985)
|..+...+..+.+++..|.+. .++.++.|++.+++.++.++. ++||+|+++.-.|+.+...++ .
T Consensus 79 G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~---~~gd~Vlv~~p~y~~~~~~~~----~ 151 (425)
T 2r2n_A 79 GIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII---NPGDNVLLDEPAYSGTLQSLH----P 151 (425)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC---CTTCEEEEESSCCHHHHHHHG----G
T ss_pred CCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC---CCCCEEEEeCCCcHHHHHHHH----H
Confidence 333333344455556668764 478889999988877766552 378999999999999887764 4
Q ss_pred CCeEEEEeCc-------hhhhc-cC------------CCEeEEEE-EcC-CCCeeeccHH---HHHHHHHhCCcEEEEEe
Q 001989 279 FDIKVVVSDL-------KDIDY-KS------------GDVCGVLV-QYP-GTEGEVLDYG---DFIKNAHANGVKVVMAT 333 (985)
Q Consensus 279 ~gi~v~~v~~-------~~l~~-l~------------~~t~~V~v-~~p-n~~G~v~di~---~I~~~a~~~galliV~a 333 (985)
.|.+++.++. ++|++ +. +++++|++ .+| |.+|.+.+.+ +|+++|+++|+++++|
T Consensus 152 ~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~D- 230 (425)
T 2r2n_A 152 LGCNIINVASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIED- 230 (425)
T ss_dssp GTCEEEEECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE-
T ss_pred cCCEEEEeCcCCCCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEE-
Confidence 5888877754 45655 54 46888876 466 7899988654 9999999999999995
Q ss_pred cCccc----cCC-CCCC---cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeec
Q 001989 334 DLLAL----TIL-KPPG---ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAM 404 (985)
Q Consensus 334 ~~~~l----g~l-~~~~---~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l 404 (985)
+..+. |.. .+.. ..+.+|+++|. |.|+ | |--+|++++++++++.+...
T Consensus 231 e~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~----GlRiG~~~~~~~l~~~l~~~------------------ 287 (425)
T 2r2n_A 231 DPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-S----GLRIGFLTGPKPLIERVILH------------------ 287 (425)
T ss_dssp CTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-S----TTCCEEEEEEHHHHHHHHHH------------------
T ss_pred CCcccccCCCCCCCCccccCCCCCEEEEccchhhcc-C----ccceEEEecCHHHHHHHHHH------------------
Confidence 33331 111 1111 23556888887 7764 2 22369999998877654100
Q ss_pred ccccccccccccCCCccchh-HHHHHHHHHHHHHhCc----chHHHHHHHHHHHHHHHHHHHhcC-CCe-EEcCCCCcce
Q 001989 405 QTREQHIRRDKATSNICTAQ-ALLANMAAMYAVYHGP----EGLKTIAQRVHGLAGTFALGLKKL-GTV-EVQGLPFFDT 477 (985)
Q Consensus 405 ~tre~~irre~atsni~t~~-~l~a~~aa~~l~~~g~----~Gl~~i~~~~~~~a~~l~~~L~~~-g~~-~~~~~~~~~~ 477 (985)
+. . ...+.+. ...++.+ ++...+. +-++++.++..++.+++.+.|++. +++ .+..+....-
T Consensus 288 --------~~-~-~~~~~~~~~q~a~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~ 355 (425)
T 2r2n_A 288 --------IQ-V-STLHPSTFNQLMISQ--LLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMF 355 (425)
T ss_dssp --------HH-T-TTCSSCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSE
T ss_pred --------HH-H-hcCCCCHHHHHHHHH--HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEE
Confidence 00 0 0111111 1112222 2232221 235667777788889999999874 335 3332211112
Q ss_pred EEEecCC---HHH-HHHHHHHcCceeeee---------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 478 VKVKCAD---AHA-IASAAYKIEMNLRVV---------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 478 ~~~~~~~---~~~-v~~~L~~~GI~~~~~---------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+++++ ..+ +.+.|.++||.+... ..+.+|++++. .++++|+++++.|..
T Consensus 356 ~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~ 419 (425)
T 2r2n_A 356 LWIKVKGINDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQ 419 (425)
T ss_dssp EEEEETTCSCCHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHH
Confidence 3344442 445 688888999987532 13689999984 599999999999874
No 411
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.45 E-value=7.5e-12 Score=144.84 Aligned_cols=276 Identities=14% Similarity=0.076 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhh-h--c-CCC-CEEEEcC-CCChhHHHHHHHhhc-------
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI-Q--K-GKK-KTFIIAS-NCHPQTIDICITRAD------- 277 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~-~--~-~~g-~~Vlv~~-~~H~s~~~~~~~~a~------- 277 (985)
+...++++.+++++|.+ ++.+++|||.++++++.+.+. . + .+| ++||+.+ ..|......+.....
T Consensus 99 ~~~~~l~~~la~~~g~~--~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~ 176 (420)
T 2pb2_A 99 EPALRLGRKLIDATFAE--RVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGF 176 (420)
T ss_dssp HHHHHHHHHHHHHSSCS--EEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTS
T ss_pred HHHHHHHHHHHhhCCCC--eEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccC
Confidence 34456778999999854 588899999888887754331 0 0 123 5888776 455555444432100
Q ss_pred -CCCeEEEEe---Cchhhhc-cCCCEeEEEEEcC-CCCee----eccHHHHHHHHHhCCcEEEEEecCc-cccCCCCCC-
Q 001989 278 -GFDIKVVVS---DLKDIDY-KSGDVCGVLVQYP-GTEGE----VLDYGDFIKNAHANGVKVVMATDLL-ALTILKPPG- 345 (985)
Q Consensus 278 -~~gi~v~~v---~~~~l~~-l~~~t~~V~v~~p-n~~G~----v~di~~I~~~a~~~galliV~a~~~-~lg~l~~~~- 345 (985)
.....+..+ |+++|++ +++++++|++..+ |..|. .+++++|.++|+++|+++++|. .. .++....+.
T Consensus 177 ~p~~~~~~~~~~~d~~~le~~i~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~De-v~~g~~~~g~~~~ 255 (420)
T 2pb2_A 177 GPKPADIIHVPFNDLHAVKAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDE-VQCGMGRTGDLFA 255 (420)
T ss_dssp SSCCSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEEC-TTTTTTTTSSSSH
T ss_pred CCCCCCeEEecCCCHHHHHHHhccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEc-CCcCcccCCcHHH
Confidence 011124444 4567777 8889999988765 45665 3589999999999999999953 33 233211111
Q ss_pred ----cccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCcc
Q 001989 346 ----ELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNIC 421 (985)
Q Consensus 346 ----~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~ 421 (985)
....|+++. +|.|++ |-.+|++++++++.+.+... ..+ .| .+
T Consensus 256 ~~~~~~~~diit~-sK~l~~-----G~~iG~~~~~~~l~~~l~~~----------~~~----------------~t--~~ 301 (420)
T 2pb2_A 256 YMHYGVTPDILTS-AKALGG-----GFPVSAMLTTQEIASAFHVG----------SHG----------------ST--YG 301 (420)
T ss_dssp HHHHTCCCSEEEE-CGGGGT-----TSCCEEEEECHHHHTTCC--------------C----------------CE--EC
T ss_pred HHhcCCCCCeEEe-cccccC-----CCceEEEEEhHHHHHhhcCC----------CcC----------------cc--cC
Confidence 134788754 488852 22368888898877765310 000 01 11
Q ss_pred chhH-HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC--C--CeEEcCCCCcceEEEecC-----CHHHHHHH
Q 001989 422 TAQA-LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL--G--TVEVQGLPFFDTVKVKCA-----DAHAIASA 491 (985)
Q Consensus 422 t~~~-l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~--g--~~~~~~~~~~~~~~~~~~-----~~~~v~~~ 491 (985)
.+.. ..+..++ +..+.. +++.++..++.+++++.|+++ + .+.... +...-+.+.++ ...++.+.
T Consensus 302 ~~~~~~aa~~a~--L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~g~~~~v~~~~~~~~~~~~l~~~ 375 (420)
T 2pb2_A 302 GNPLACAVAGAA--FDIINT---PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIR-GMGLLIGAELKPKYKGRARDFLYA 375 (420)
T ss_dssp CCHHHHHHHHHH--HHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE-EETTEEEEEECGGGTTCHHHHHHH
T ss_pred cCHHHHHHHHHH--HHHHHh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE-ecceEEEEEECCCchHHHHHHHHH
Confidence 1111 1122222 344443 456777888889999988775 2 122111 11112333332 26789999
Q ss_pred HHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 492 AYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 492 L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
|.++||.+....++.+|++++...|++|+|+++++|.+
T Consensus 376 l~~~Gi~v~~~~~~~iRl~~~~~~t~eei~~~~~~l~~ 413 (420)
T 2pb2_A 376 GAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFAQ 413 (420)
T ss_dssp HHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHCCCEEEeCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 99999988765568899999999999999999999974
No 412
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.44 E-value=3.9e-12 Score=143.31 Aligned_cols=304 Identities=13% Similarity=0.114 Sum_probs=178.1
Q ss_pred ceecCCCCCCCCCcHHHHHHHHhCC---ccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHH
Q 001989 168 KSFIGMGYYNTHVPPVILRNIMENP---AWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAM 244 (985)
Q Consensus 168 ~~~lG~g~y~~~~p~~v~~~i~~~~---~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~ 244 (985)
++|+|.|..|. ++.++. +.+..- ..-..|++ . ....++++.+|+++|.+. ..++.+||.+.+.+
T Consensus 12 ~~~l~~~~~p~-~~~~~~-~~~~~~~~~~~~~~y~~-~--------~~~~~l~~~la~~~~~~~--~i~~~~G~~a~~~a 78 (357)
T 3lws_A 12 TTGQISGHGKR-NVGVLK-TAFAAVADEMASDQYGT-G--------AIIEPFEQKFADVLGMDD--AVFFPSGTMAQQVA 78 (357)
T ss_dssp CSEESSBSSCC-BHHHHH-HHHTTSCTTCBCEETTE-E--------TTHHHHHHHHHHHHTCSE--EEEESCHHHHHHHH
T ss_pred hcccccCCCCC-CHHHHH-HHHHHhhcccCcccccC-C--------hHHHHHHHHHHHHhCCCc--EEEecCcHHHHHHH
Confidence 46889997664 334443 444431 11112221 1 123467789999999865 45568888776655
Q ss_pred HHHhhhhcCCCC--EEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-------hhhhccCCCEeEEEEEcC-CCC-eeec
Q 001989 245 AMCNNIQKGKKK--TFIIASNCHPQTIDICITRADGFDIKVVVSDL-------KDIDYKSGDVCGVLVQYP-GTE-GEVL 313 (985)
Q Consensus 245 ~~a~~~~~~~g~--~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-------~~l~~l~~~t~~V~v~~p-n~~-G~v~ 313 (985)
+.++. . ++| .|+++...|++....... +...|++++.++. ++|++. .++++|++.+| |++ |.+.
T Consensus 79 l~~~~-~--~gd~~~vi~~~~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~d~~~l~~~-~~~~~v~~~~p~np~~G~~~ 153 (357)
T 3lws_A 79 LRIWS-D--ETDNRTVAYHPLCHLEIHEQDGL-KELHPIETILVGAADRLMTLDEIKAL-PDIACLLLELPQREIGGVAP 153 (357)
T ss_dssp HHHHH-H--HHTCCEEEECTTCHHHHSSTTHH-HHHSSCEEEECSCTTSCCCHHHHHTC-CSCSEEEEESSBGGGTSBCC
T ss_pred HHHHh-h--cCCCcEEEecccceeeeeccchh-hhccCcEEEEecCCCCCcCHHHHhcC-cCcceEEEEcccccCCceeC
Confidence 55442 2 445 788888888776542100 1124888887754 345443 24899999999 455 8876
Q ss_pred ---cHHHHHHHHHhCCcEEEEEecCcc---ccCCC-CCC--cccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcC
Q 001989 314 ---DYGDFIKNAHANGVKVVMATDLLA---LTILK-PPG--ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMM 383 (985)
Q Consensus 314 ---di~~I~~~a~~~galliV~a~~~~---lg~l~-~~~--~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~l 383 (985)
++++|+++|+++|+++++|. ... .+... +.. ..++|+++.+. |.|++| ..|+++.++++++.+
T Consensus 154 ~~~~l~~i~~~~~~~~~~li~D~-a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~------~gg~~~~~~~~~~~~ 226 (357)
T 3lws_A 154 AFSELETISRYCRERGIRLHLDG-ARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGI------AGAILAGPAAFCQTA 226 (357)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEE-TTHHHHHHHHTCCHHHHHTTSSEEEEESSSTTCCS------SCEEEEECHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCEEEEEC-chhhhhhhhcCCChHHHHhcCCEEEEeccccCCCC------ceEEEEcCHHHHHHH
Confidence 59999999999999999953 222 11111 111 14589988887 877543 338898888877654
Q ss_pred CCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc
Q 001989 384 PGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK 463 (985)
Q Consensus 384 p~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~ 463 (985)
.. + +...+ .+..+.... +..+...+... .+..++..++++++.+.|++
T Consensus 227 ~~--------------~-----------~~~~~-~~~~~~~~~-~~~~~~~l~~~-----~~~~~~~~~~~~~l~~~L~~ 274 (357)
T 3lws_A 227 RI--------------W-----------KRRYG-GDLISLYPY-IVSADYYYELR-----KDRMGQYYEQAKQLAEQFNA 274 (357)
T ss_dssp HH--------------H-----------HHHTT-CCCSCCHHH-HHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHT
T ss_pred HH--------------H-----------HHHhc-CCcccchHH-HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHh
Confidence 10 0 00000 011111111 11111111211 11223346778899999999
Q ss_pred CCCeEEc-CCCCcceEEEecCC-----HHHHHHHHHHcCceeeee---cCC--eEEEEeccC---CCHHHHHHHHHHHh
Q 001989 464 LGTVEVQ-GLPFFDTVKVKCAD-----AHAIASAAYKIEMNLRVV---DSN--TVTASFDET---TTLEDVDKLFIVFA 528 (985)
Q Consensus 464 ~g~~~~~-~~~~~~~~~~~~~~-----~~~v~~~L~~~GI~~~~~---~~~--~lris~t~~---~t~edId~li~aL~ 528 (985)
++++++. .++..+-+.++++. ..++.+.|.++||.+... .++ .+|++++.. .+++++++.++.|.
T Consensus 275 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~ 353 (357)
T 3lws_A 275 LPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLR 353 (357)
T ss_dssp STTEEEESSSCSSSEEEEEEESCHHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHH
T ss_pred CCCCeeccCCCcceEEEEEecCChHHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHH
Confidence 8449884 33333334444432 567889999999987542 133 789998754 57888888877775
No 413
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.44 E-value=1.2e-11 Score=143.30 Aligned_cols=279 Identities=13% Similarity=0.088 Sum_probs=172.0
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-hhc---CCCCEEEEcC-CCChhHHHHHHHhhc-----------
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQK---GKKKTFIIAS-NCHPQTIDICITRAD----------- 277 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~~---~~g~~Vlv~~-~~H~s~~~~~~~~a~----------- 277 (985)
.++.+.+++++|.+..++.+++|||.+++.++.+.+ +.. .+|++||+.+ ..|+.....+.. ..
T Consensus 89 ~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~-~~~~~~~~~~~~~ 167 (429)
T 1s0a_A 89 IELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSV-CDPDNSMHSLWKG 167 (429)
T ss_dssp HHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTT-SCTTTTTGGGGTT
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhh-cCCchhhcccccC
Confidence 456678999998877889999999988887765332 221 1478998888 566655444321 00
Q ss_pred -CCCeEEEEe------------Cchhhhc-cC---CCEeEEEEEcC--CCCeeecc----HHHHHHHHHhCCcEEEEEec
Q 001989 278 -GFDIKVVVS------------DLKDIDY-KS---GDVCGVLVQYP--GTEGEVLD----YGDFIKNAHANGVKVVMATD 334 (985)
Q Consensus 278 -~~gi~v~~v------------~~~~l~~-l~---~~t~~V~v~~p--n~~G~v~d----i~~I~~~a~~~galliV~a~ 334 (985)
..++..+.+ |+++|++ ++ +++++|++..+ |.+|.+.+ +++|.++|+++|+++++| +
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~D-e 246 (429)
T 1s0a_A 168 YLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIAD-E 246 (429)
T ss_dssp TSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEE-C
T ss_pred CCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEe-e
Confidence 013343332 3345655 54 57777776554 56998776 999999999999999995 3
Q ss_pred Ccc-ccCCCCC---C--cccceEEEecCccccccCCCCC-CcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccc
Q 001989 335 LLA-LTILKPP---G--ELGADIVVGSAQRFGVPMGYGG-PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTR 407 (985)
Q Consensus 335 ~~~-lg~l~~~---~--~~GaDi~v~s~k~lg~P~~~GG-P~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tr 407 (985)
.++ +|..... . ....|+++.| |+|++ | -.+|++++++++++.+... +...+
T Consensus 247 ~~~~~g~~g~~~~~~~~~~~~d~~t~s-K~l~~-----G~~~iG~~~~~~~~~~~l~~~---------~~~~~------- 304 (429)
T 1s0a_A 247 IATGFGRTGKLFACEHAEIAPDILCLG-KALTG-----GTMTLSATLTTREVAETISNG---------EAGCF------- 304 (429)
T ss_dssp TTTTTTTTSSSSGGGGGTCCCSEEEEC-GGGGT-----SSSCCEEEEECHHHHHHHHTS---------TTSSC-------
T ss_pred hhhCCcccchHHHhhhcCCCCCEEEec-ccccC-----CCccceEEEeCHHHHHHhhcC---------CCccc-------
Confidence 333 4322111 1 2356877544 87752 3 3478999998887665210 00000
Q ss_pred cccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC---CeEEcCCCCcceEEEecC-
Q 001989 408 EQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQGLPFFDTVKVKCA- 483 (985)
Q Consensus 408 e~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~~~~~~~~~- 483 (985)
...+|.+.. +.+..+..+++ ..+..+ ++.++..++.++++++|++++ ++..+.. ...-+.+.++
T Consensus 305 -----~~~~t~~~n-~~~~~a~~aal--~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~~~~~~ 372 (429)
T 1s0a_A 305 -----MHGPTFMGN-PLACAAANASL--AILESG---DWQQQVADIEVQLREQLAPARDAEMVADVRV-LGAIGVVETTH 372 (429)
T ss_dssp -----SCCCTTTTC-HHHHHHHHHHH--HHHHTC---HHHHHHHHHHHHHHHHHGGGGGCTTEEEEEE-ETTEEEEEESS
T ss_pred -----ccCCCCCCC-HHHHHHHHHHH--HHHHhC---CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEE-eeEEEEEEECC
Confidence 011222211 12222222332 333222 456777888999999998752 2432211 1112334444
Q ss_pred --CHHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 484 --DAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 484 --~~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++.++.+.|.++||.++.. .+.+|++++..+|++|+|+++++|++
T Consensus 373 ~~~~~~l~~~l~~~Gi~v~~~-~~~iRis~~~~~t~e~i~~~~~~l~~ 419 (429)
T 1s0a_A 373 PVNMAALQKFFVEQGVWIRPF-GKLIYLMPPYIILPQQLQRLTAAVNR 419 (429)
T ss_dssp CBCHHHHHHHHHHTTEECCCB-TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHCCCEEecc-CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2778999999999988763 47899999999999999999999974
No 414
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.43 E-value=8e-12 Score=145.95 Aligned_cols=272 Identities=13% Similarity=0.030 Sum_probs=166.4
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCC-hhHHHHHHHhhcCCCeEEEEeCc---
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCH-PQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H-~s~~~~~~~~a~~~gi~v~~v~~--- 288 (985)
..++++.+|+++|.+ ++.++.|||.+++.++.++ . ++|| +++...| +++...++. .|.+++.++.
T Consensus 77 ~~~l~~~la~~~~~~--~~~~~~~gt~a~~~al~~l-~--~~gd--i~~~~~~~~~~~~~~~~----~G~~~~~v~~~~~ 145 (456)
T 2ez2_A 77 FYHLERTVQELFGFK--HIVPTHQGRGAENLLSQLA-I--KPGQ--YVAGNMYFTTTRYHQEK----NGAVFVDIVRDEA 145 (456)
T ss_dssp HHHHHHHHHHHHCCS--EEEEESSHHHHHHHHHHHH-C--CTTC--EEEESSCCHHHHHHHHH----TTCEEEECBCGGG
T ss_pred HHHHHHHHHHHhCCC--cEEEeCCcHHHHHHHHHHh-C--CCCC--EeccccccchhHHHHHH----cCCEEEEeccccc
Confidence 456788999999976 5888899998877776654 2 3788 5666666 887777643 5777777643
Q ss_pred ---------------hhhhc-cCCCE----eEEEEEcC-C-CCeeecc---HHHHHHHHHhCCcEEEEEecCcccc----
Q 001989 289 ---------------KDIDY-KSGDV----CGVLVQYP-G-TEGEVLD---YGDFIKNAHANGVKVVMATDLLALT---- 339 (985)
Q Consensus 289 ---------------~~l~~-l~~~t----~~V~v~~p-n-~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg---- 339 (985)
++|++ +++++ ++|++++| | .+|.+.| +++|+++|+++|+++++| +.++.|
T Consensus 146 ~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~D-e~~~~g~~~~ 224 (456)
T 2ez2_A 146 HDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYD-ATRCVENAYF 224 (456)
T ss_dssp GCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEE-CTTHHHHHHH
T ss_pred ccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEE-cccccccccc
Confidence 23444 54444 88889888 5 7998876 999999999999999995 344443
Q ss_pred -----C-C-CCCC-------cccceEEEecCccccccCCCCCCcEEEEEE-chhhHhcCCCceeeeeecCCCCcceeeec
Q 001989 340 -----I-L-KPPG-------ELGADIVVGSAQRFGVPMGYGGPHAAFLAT-SQEYKRMMPGRIVGVSIDSSGKPALRVAM 404 (985)
Q Consensus 340 -----~-l-~~~~-------~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~-~~~~~~~lp~~~vG~t~d~~g~~~~~l~l 404 (985)
. . ..+- ....|+++.|+|+++++ |.+|++++ ++++.+.+...... . .+ +
T Consensus 225 ~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~-----~~gG~~~~~~~~~~~~~~~~~~~---~-~~---~---- 288 (456)
T 2ez2_A 225 IKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLV-----NIGGFLCMNDDEMFSSAKELVVV---Y-EG---M---- 288 (456)
T ss_dssp HHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCC-----SSCEEEEESCHHHHHHHHHHHHH---H-TC---C----
T ss_pred ccccccccCCcchhhhhhhhcccCCEEEEeCcccCCC-----CceeEEEECCHHHHHHHHHHHhh---c-cC---c----
Confidence 1 1 1110 12369988877776431 23588888 56666544100000 0 00 0
Q ss_pred ccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEEEec--
Q 001989 405 QTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKC-- 482 (985)
Q Consensus 405 ~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~~~~-- 482 (985)
...+..| + ..+.+++.+ .+..+. ++..++..++++++.+.|++.| +++..+....-+.+..
T Consensus 289 --------~~~~~~~--~-~~~~a~a~~-~~~~~~----~~~~~~~~~~~~~l~~~L~~~g-~~~~~p~~~~~~~~~~~~ 351 (456)
T 2ez2_A 289 --------PSYGGLA--G-RDMEAMAIG-LREAMQ----YEYIEHRVKQVRYLGDKLKAAG-VPIVEPVGGHAVFLDARR 351 (456)
T ss_dssp --------TTTTTCC--H-HHHHHHHHH-HHHHTC----HHHHHHHHHHHHHHHHHHHHTT-CCBCSSCCSSEEEEEHHH
T ss_pred --------ccccCcc--h-hHHHHHHHH-HHHHhH----HHHHHHHHHHHHHHHHHHhcCC-CccccCCCceEEEEEhHH
Confidence 0000011 1 122121111 112221 4566777788899999999876 7665322222233332
Q ss_pred --CC--HHHH-----HHHH-HHcCceeee---e--------------cCCeEEEEeccC-CCHHHHHHHHHHHhC
Q 001989 483 --AD--AHAI-----ASAA-YKIEMNLRV---V--------------DSNTVTASFDET-TTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 --~~--~~~v-----~~~L-~~~GI~~~~---~--------------~~~~lris~t~~-~t~edId~li~aL~~ 529 (985)
++ ..++ .++| .++||.+.. . ..+.+|+|++.. +|++||++++++|.+
T Consensus 352 ~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~ 426 (456)
T 2ez2_A 352 FCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIK 426 (456)
T ss_dssp HTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred hcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 22 3344 6677 577986421 0 026899999987 899999999999974
No 415
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.43 E-value=5.1e-12 Score=146.99 Aligned_cols=276 Identities=9% Similarity=0.029 Sum_probs=165.7
Q ss_pred HHHHHHHHHhc------CCCCcceeeccchHHHHHHHHHHhhhhcCCCC--------------EEEEc-CCCChhHHHHH
Q 001989 214 LNFQTMIADLT------GLPMSNASLLDEGTAAAEAMAMCNNIQKGKKK--------------TFIIA-SNCHPQTIDIC 272 (985)
Q Consensus 214 ~e~q~~ia~L~------g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~--------------~Vlv~-~~~H~s~~~~~ 272 (985)
.++++.+|+++ +.++.++.+++|+|.+++.++.++. . +|| +||++ ...|+.+...+
T Consensus 86 ~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~-~--~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~ 162 (444)
T 3if2_A 86 SAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFG-G--AFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVH 162 (444)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSS-E--EEECC-------CEEEEEEEESSSSCCGGGTTCC
T ss_pred HHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHh-C--CCccccccccccccccceEEEeCCCCccchhhcc
Confidence 35667777776 5677899999999988877766542 2 555 78886 66777766542
Q ss_pred HH--hhcCCCeEEEEeC-------------chhhhc----cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEE
Q 001989 273 IT--RADGFDIKVVVSD-------------LKDIDY----KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKV 329 (985)
Q Consensus 273 ~~--~a~~~gi~v~~v~-------------~~~l~~----l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~gall 329 (985)
.. .....|..++.++ +++|++ +++++++|++++| |.+|.+.| +++|+++|+++|+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~l 242 (444)
T 3if2_A 163 VEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPL 242 (444)
T ss_dssp SSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCE
T ss_pred cccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEE
Confidence 10 1234566665443 345554 3678999999988 78999988 899999999999999
Q ss_pred EEEecCccc-----cCC-CCCCcccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeee
Q 001989 330 VMATDLLAL-----TIL-KPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVA 403 (985)
Q Consensus 330 iV~a~~~~l-----g~l-~~~~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~ 403 (985)
++|. ..+. ... ..+...+.+++++|..+++.| |-.+|++.+++++.+.+... .+.+
T Consensus 243 i~De-~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~----G~r~G~~~~~~~l~~~~~~~----------~~~~--- 304 (444)
T 3if2_A 243 IIDN-AYGMPFPNIIYSDAHLNWDNNTILCFSLSKIGLP----GMRTGIIVADAKVIEAVSAM----------NAVV--- 304 (444)
T ss_dssp EEEC-TTCTTTTCCBCSCCCCCCCTTEEEEEESTTTTCG----GGCCEEEECCHHHHHHHHHH----------HHHH---
T ss_pred EEEC-CCCCcccccccccccccCCCCEEEEechhhccCC----CCceEEEEECHHHHHHHHHH----------HHhc---
Confidence 9953 3331 111 112346788999998334432 34578998888877655110 0000
Q ss_pred cccccccccccccCCCccchhHHHHHHHHHHHHHhC-cchHHH-HHHHHHHHHHHHHHHHhc----CCCeEEcCCCCcce
Q 001989 404 MQTREQHIRRDKATSNICTAQALLANMAAMYAVYHG-PEGLKT-IAQRVHGLAGTFALGLKK----LGTVEVQGLPFFDT 477 (985)
Q Consensus 404 l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g-~~Gl~~-i~~~~~~~a~~l~~~L~~----~g~~~~~~~~~~~~ 477 (985)
..+.+. ....+..+.+ .... .+-+++ +.++..++.+++.+.|.+ ++ +++..+....-
T Consensus 305 -----------~~~~~~---~~~~a~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~g~~ 367 (444)
T 3if2_A 305 -----------NLAPTR---FGAAIATPLV--ANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYP-LMIHKPEGAIF 367 (444)
T ss_dssp -----------HSSCCC---HHHHHHHHHH--HTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSS-EEEECCCBSSE
T ss_pred -----------cCCCCh---HHHHHHHHHH--HcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-ceEecCCccEE
Confidence 000111 1121221111 1100 001111 333444455555555543 34 66653221112
Q ss_pred EEEecC--C--HHHHHHHHHHcCceeeeec--------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 478 VKVKCA--D--AHAIASAAYKIEMNLRVVD--------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 478 ~~~~~~--~--~~~v~~~L~~~GI~~~~~~--------------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+.++ + ..++.+.|.++||.+.... .+.+|++++. |++||+++++.|.+
T Consensus 368 ~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~ 435 (444)
T 3if2_A 368 LWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGE 435 (444)
T ss_dssp EEEEETTCSSCHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCCHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHH
Confidence 333333 2 7889999999999875421 1579999997 99999999999874
No 416
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.43 E-value=3.2e-12 Score=146.62 Aligned_cols=276 Identities=11% Similarity=-0.006 Sum_probs=161.8
Q ss_pred HHHHHHHHHhcCCC------Ccceee--ccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001989 214 LNFQTMIADLTGLP------MSNASL--LDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 214 ~e~q~~ia~L~g~~------~~~~sl--~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~ 285 (985)
.++++.+|++++.. +.++.+ +.|+|.++..++.++....++||+|++++-.|+.+...++. .|.+++.
T Consensus 74 ~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~----~g~~~~~ 149 (401)
T 7aat_A 74 ADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRD----AGLQLQA 149 (401)
T ss_dssp HHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHH----TTCEEEE
T ss_pred HHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHH----cCCeeEe
Confidence 45667777777543 567766 89999877766544321113799999999999999888754 4777777
Q ss_pred eCch----------hhhc----cCCCEeEEEEEcC-CCCeee---ccHHHHHHHHHhCCcEEEEEecCccccCCCC----
Q 001989 286 SDLK----------DIDY----KSGDVCGVLVQYP-GTEGEV---LDYGDFIKNAHANGVKVVMATDLLALTILKP---- 343 (985)
Q Consensus 286 v~~~----------~l~~----l~~~t~~V~v~~p-n~~G~v---~di~~I~~~a~~~galliV~a~~~~lg~l~~---- 343 (985)
++.+ ++++ +.+++++|++.+| |.+|.+ +++++|+++|+++|+++++|.-...++.-..
T Consensus 150 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 229 (401)
T 7aat_A 150 YRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDA 229 (401)
T ss_dssp EECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHT
T ss_pred eeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccH
Confidence 7542 1222 3467888899888 789965 4689999999999999999531122221110
Q ss_pred ------CCcccceEEEecC-ccccccCCCCCCcEEEEEE---chhhHhcCCCceeeeeecCCCCcceeeecccccccccc
Q 001989 344 ------PGELGADIVVGSA-QRFGVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR 413 (985)
Q Consensus 344 ------~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irr 413 (985)
....+-.|+++|. |.|+.| |..+|++++ +++..+.+ .+ .-...++
T Consensus 230 ~~~~~~~~~~~~~i~~~S~sK~~~~~----G~RiG~l~~~~~~~~~~~~~----~~-----------------~~~~~~~ 284 (401)
T 7aat_A 230 WALRHFIEQGIDVVLSQSYAKNMGLY----GERAGAFTVICRDAEEAKRV----ES-----------------QLKILIR 284 (401)
T ss_dssp HHHHHHHHTTCCCEEEEECTTTSCCG----GGCEEEEEEECSSHHHHHHH----HH-----------------HHHHHHH
T ss_pred HHHHHHHhcCCcEEEEecCCcccccc----cCceEEEEEEeCCHHHHHHH----HH-----------------HHHHHHH
Confidence 0112345677886 777532 233788876 33322211 00 0000011
Q ss_pred cccCCCccchhHHHHHHHHHHHHH---hC--cchHHHHHHHHHHHHHHHHHHHhcCC---CeEEcCCCCcceEEE-ecCC
Q 001989 414 DKATSNICTAQALLANMAAMYAVY---HG--PEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQGLPFFDTVKV-KCAD 484 (985)
Q Consensus 414 e~atsni~t~~~l~a~~aa~~l~~---~g--~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~~~~~~-~~~~ 484 (985)
..+++.. ......++.++.. .. .+-++++.++..++.+++.+.|+++| ++++.. +...-+.+ ..+
T Consensus 285 -~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~- 358 (401)
T 7aat_A 285 -PMYSNPP---MNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHIT-DQIGMFCFTGLK- 358 (401)
T ss_dssp -HHHSSCC---HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHH-HCCSSEEECCCC-
T ss_pred -hccCCCC---hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceec-CCcceEEecCCC-
Confidence 1122221 1111112111110 00 23366778888899999999999875 122221 11111222 222
Q ss_pred HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 485 AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 ~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.+...|.++||.+.. .+|+|++..++++ ||+++++|.+
T Consensus 359 ~~~~~~ll~~~gi~v~~----~~Ris~~~~~~~~-i~~~~~~l~~ 398 (401)
T 7aat_A 359 PEQVERLTKEFSIYMTK----DGRISVAGVASSN-VGYLAHAIHQ 398 (401)
T ss_dssp HHHHHHHHHHHCEECCT----TCEEEGGGCCTTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCEeccC----CCeEEeccCChhh-HHHHHHHHHH
Confidence 55554445677998753 4799998766665 9999999863
No 417
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.43 E-value=1.5e-12 Score=155.75 Aligned_cols=130 Identities=12% Similarity=0.142 Sum_probs=95.1
Q ss_pred CCCCEEEEcCCCCcccHHHHHH--CCcEEEEEcCCCC--CCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHH
Q 001989 678 HHRNVCIIPVSAHGTNPATAAM--CGMKIVSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGID 750 (985)
Q Consensus 678 ~~~~~IIv~~~~Hg~~~~~a~~--~G~~vv~v~~d~~--g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~ 750 (985)
.++|+|+++++.|..+...+.. .|++++.+|++++ +.+|+++|+++++ +++++|++++| |++|.+. .+++
T Consensus 192 ~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~v~l~~p~NPtG~~~~~~~l~ 268 (546)
T 2zy4_A 192 KAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKD---PAIKIFFCVNPSNPPSVKMDQRSLE 268 (546)
T ss_dssp CTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS---TTEEEEEEESSCSSSCBCCCHHHHH
T ss_pred CCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC---CCCeEEEEECCCCCCCccCCHHHHH
Confidence 4678999988866555554443 4689999998654 4699999998875 78999999999 4799886 1477
Q ss_pred HHHHHH--HHcCCEEEEEccccccccCCCCCCc--cCCcEEEeCCcccccccCCCCCCceEEEEEccc
Q 001989 751 EICKII--HDNGGQVYMDGANMNAQVGLTSPGY--IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH 814 (985)
Q Consensus 751 eI~~la--~~~galliVD~a~~~~~~~l~~pg~--~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~ 814 (985)
+|.++| +++|+++++|+++............ .+.++++.|++|+|+.| |.++|+++++++
T Consensus 269 ~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~----GlRiG~~~~~~~ 332 (546)
T 2zy4_A 269 RVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGAT----GWRLGVVAAHQQ 332 (546)
T ss_dssp HHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCG----GGCEEEEEEESS
T ss_pred HHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCC----CcceEEEEECCH
Confidence 788898 7889999999998521111111111 13568889999998543 677999998875
No 418
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.42 E-value=4.8e-12 Score=149.98 Aligned_cols=280 Identities=13% Similarity=0.106 Sum_probs=169.6
Q ss_pred hhHHHHHHHHHHHHHHhcC--CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001989 207 QGRLESLLNFQTMIADLTG--LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~ 284 (985)
+|..+...+..+.+.+..| .++.++.+++|+|.++..++.++.. ++||+|+++.-.|+.+...++. .|.+++
T Consensus 134 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~--~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~ 207 (500)
T 3tcm_A 134 QGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIR--NEKDGILVPIPQYPLYSASIAL----HGGALV 207 (500)
T ss_dssp TCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCC--STTEEEEEEESCCTHHHHHHHH----TTCEEE
T ss_pred cChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcC--CCCCEEEEeCCCcHhHHHHHHH----cCCEEE
Confidence 3443333333333333334 5677899999999887776665421 3789999999999999988754 477777
Q ss_pred EeCc----------hhhhc-cCC------CEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCCC
Q 001989 285 VSDL----------KDIDY-KSG------DVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILKP 343 (985)
Q Consensus 285 ~v~~----------~~l~~-l~~------~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~~ 343 (985)
.+++ ++|++ +.+ ++++|++.+| |++|.+. ++++|+++|+++|+++++| +..+......
T Consensus 208 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~D-eay~~~~~~~ 286 (500)
T 3tcm_A 208 PYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLAD-EVYQENIYVD 286 (500)
T ss_dssp EEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE-CTTTTCBCCT
T ss_pred EEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEe-cCccccccCC
Confidence 6643 34555 543 7899999998 7899885 5788888899999999995 3333222211
Q ss_pred -----C-----Cccc-----c-eEEEecC-ccc-cccCCCCCCcEEEEEE---chhhHhcCCCceeeeeecCCCCcceee
Q 001989 344 -----P-----GELG-----A-DIVVGSA-QRF-GVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRV 402 (985)
Q Consensus 344 -----~-----~~~G-----a-Di~v~s~-k~l-g~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~t~d~~g~~~~~l 402 (985)
+ .++| . .|+++|. |.| |.| | -.+|++.+ ++++++.+-
T Consensus 287 ~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~-G---~R~G~~~~~~~~~~~~~~l~------------------ 344 (500)
T 3tcm_A 287 NKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGEC-G---KRGGYFEITGFSAPVREQIY------------------ 344 (500)
T ss_dssp TCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCG-G---GCCEEEEEESCCTTHHHHHH------------------
T ss_pred CCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCC-c---cceEEEEEeCCCHHHHHHHH------------------
Confidence 0 0121 2 2566675 877 332 2 23488877 566554430
Q ss_pred ecccccccccccccCCCccchhHHHHHHHHHHHHH---------hCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-
Q 001989 403 AMQTREQHIRRDKATSNICTAQALLANMAAMYAVY---------HGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL- 472 (985)
Q Consensus 403 ~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~---------~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~- 472 (985)
..+ ..+.|++......++.+ +.- ...+-++++.++..++++++.+.|+++.|+++..+
T Consensus 345 -------~~~----~~~~~~~~~~q~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~ 412 (500)
T 3tcm_A 345 -------KIA----SVNLCSNITGQILASLV-MNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAE 412 (500)
T ss_dssp -------HHH----HTTCCCCHHHHHHHHHH-HSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCC
T ss_pred -------HHH----hcccCCCHHHHHHHHHH-hcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCC
Confidence 000 12233333222222211 110 00123566778888999999999999833887632
Q ss_pred -CCcceEEEecCC-------------HHH-HHHHHHHcCceeeee-------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 473 -PFFDTVKVKCAD-------------AHA-IASAAYKIEMNLRVV-------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 473 -~~~~~~~~~~~~-------------~~~-v~~~L~~~GI~~~~~-------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..+.-+.+..+. ... +.+.|.++||.+... ..+.+|+++. +++++|+++++.|..
T Consensus 413 g~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~i~~l~~ 489 (500)
T 3tcm_A 413 GAMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--PQEDKIPAVISRFTV 489 (500)
T ss_dssp BTTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--SCTTTHHHHHHHHHH
T ss_pred eEEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--CCHHHHHHHHHHHHH
Confidence 222111233321 111 335566789987542 1357999999 899999999998874
No 419
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.42 E-value=1.6e-11 Score=142.63 Aligned_cols=275 Identities=14% Similarity=0.156 Sum_probs=162.1
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-h--h-c--CCC-CEEEEcCC-CChhHHHHHHHhhc-----C
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-I--Q-K--GKK-KTFIIASN-CHPQTIDICITRAD-----G 278 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~--~-~--~~g-~~Vlv~~~-~H~s~~~~~~~~a~-----~ 278 (985)
...++++.+++++|.+ ++.+++|||.++++++.+.+ + . + .+| ++||+.+. .|..+...+..... .
T Consensus 108 ~~~~l~~~la~~~g~~--~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~ 185 (433)
T 1z7d_A 108 PLGICERYLTNLLGYD--KVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSN 185 (433)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------
T ss_pred HHHHHHHHHHhhcCCC--eEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCcccccc
Confidence 3456778899999854 58889999988887775432 1 1 0 134 88988875 45544444321100 0
Q ss_pred CC---eEEEEeC---chhhhc-c-CCCEeEEEEEcC-CCCeeec----cHHHHHHHHHhCCcEEEEEecCcc-ccCCCCC
Q 001989 279 FD---IKVVVSD---LKDIDY-K-SGDVCGVLVQYP-GTEGEVL----DYGDFIKNAHANGVKVVMATDLLA-LTILKPP 344 (985)
Q Consensus 279 ~g---i~v~~v~---~~~l~~-l-~~~t~~V~v~~p-n~~G~v~----di~~I~~~a~~~galliV~a~~~~-lg~l~~~ 344 (985)
++ ..+..++ +++|++ + ++++++|++... +..|.+. ++++|.++|+++|+++++| +..+ +|-....
T Consensus 186 ~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~D-Ev~~g~g~~g~~ 264 (433)
T 1z7d_A 186 FGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVAD-EVQTGLGRTGKL 264 (433)
T ss_dssp ------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEE-CTTTTTTTTSSS
T ss_pred CCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEe-cCccCCCcCCcc
Confidence 00 2344443 456776 7 678888777643 4579875 8999999999999999995 3332 3321111
Q ss_pred ---Cc--ccceEEEecCccccccCCCCC-CcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCC
Q 001989 345 ---GE--LGADIVVGSAQRFGVPMGYGG-PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATS 418 (985)
Q Consensus 345 ---~~--~GaDi~v~s~k~lg~P~~~GG-P~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~ats 418 (985)
.. ...|+++. +|.|+ || --+|++++++++++.+... .. ..|.
T Consensus 265 ~~~~~~~~~~di~t~-sK~l~-----~G~~~~G~v~~~~~~~~~l~~~----------~~----------------~~t~ 312 (433)
T 1z7d_A 265 LCVHHYNVKPDVILL-GKALS-----GGHYPISAVLANDDIMLVIKPG----------EH----------------GSTY 312 (433)
T ss_dssp SGGGGGTCCCSEEEE-CGGGG-----TTSSCCEEEEECHHHHTTCCTT----------CC----------------CCTT
T ss_pred hhhHhcCCCCCEEEE-Ccccc-----CCCCCeEEEEECHHHHhhhccc----------cc----------------cccC
Confidence 11 24687733 48775 22 1268888999887766321 00 0111
Q ss_pred CccchhH-HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC--CCeE---Ec-CCCCcceEEEecC--CHHHHH
Q 001989 419 NICTAQA-LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL--GTVE---VQ-GLPFFDTVKVKCA--DAHAIA 489 (985)
Q Consensus 419 ni~t~~~-l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~--g~~~---~~-~~~~~~~~~~~~~--~~~~v~ 489 (985)
+.+.. ..+..++ +..+..+ ++.++..++.++++++|+++ + +. .+ +...+-.+.+... .+.++.
T Consensus 313 --~~~~~~~aaa~aa--l~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~-~~~~~~~~~~g~~~~i~~~~~~~~~~~~~ 384 (433)
T 1z7d_A 313 --GGNPLAASICVEA--LNVLINE---KLCENAEKLGGPFLENLKRELKD-SKIVRDVRGKGLLCAIEFKNELVNVLDIC 384 (433)
T ss_dssp --TTCHHHHHHHHHH--HHHHHHT---THHHHHHHHHHHHHHHHHHHHTT-CTTEEEEEEETTEEEEEECTTTCCHHHHH
T ss_pred --CCCHHHHHHHHHH--HHHHHhc---cHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeeeeEEEEEEccChhHHHHHH
Confidence 11111 2122222 2333222 45667778888998888765 3 32 11 1111212233222 277899
Q ss_pred HHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 490 SAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 490 ~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.|.++||.+.....+.+|++++..+|++|||+++++|.+
T Consensus 385 ~~l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~ 424 (433)
T 1z7d_A 385 LKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVK 424 (433)
T ss_dssp HHHHHTTEECCEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHCCeEEecCCCCEEEEECCcCCCHHHHHHHHHHHHH
Confidence 9999999998765568999999999999999999999974
No 420
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.39 E-value=1.9e-11 Score=142.80 Aligned_cols=278 Identities=9% Similarity=0.048 Sum_probs=168.7
Q ss_pred HHHHHHHHHHhcC-CCCcceeeccchHHHHHHHHH-Hhhhhc---------C-CCCEEEEcCC-CChhHHHHHHH-----
Q 001989 213 LLNFQTMIADLTG-LPMSNASLLDEGTAAAEAMAM-CNNIQK---------G-KKKTFIIASN-CHPQTIDICIT----- 274 (985)
Q Consensus 213 i~e~q~~ia~L~g-~~~~~~sl~~~~ta~~ea~~~-a~~~~~---------~-~g~~Vlv~~~-~H~s~~~~~~~----- 274 (985)
..++.+.++++++ .+..++.+++|||.++++++. ++.+.. + +|++||+.+. .|......+..
T Consensus 103 ~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~ 182 (449)
T 2cjg_A 103 MARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKP 182 (449)
T ss_dssp HHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCch
Confidence 3456678999987 455678899999998888774 332221 1 2789998885 45433322110
Q ss_pred ----hhcCCCeEEEEeCchh------------------hhc-c---CCCEeEEEEEcC-CCCeeecc----HHHHHHHHH
Q 001989 275 ----RADGFDIKVVVSDLKD------------------IDY-K---SGDVCGVLVQYP-GTEGEVLD----YGDFIKNAH 323 (985)
Q Consensus 275 ----~a~~~gi~v~~v~~~~------------------l~~-l---~~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~ 323 (985)
......-.+..++.++ |++ + ++++++|++..+ |.+|.+.+ +++|.++|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~ 262 (449)
T 2cjg_A 183 TITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCD 262 (449)
T ss_dssp HHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHH
T ss_pred hhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHH
Confidence 0001112455554433 666 6 468888877654 67898777 999999999
Q ss_pred hCCcEEEEEecCcc-ccCCCCC---C--cccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCC
Q 001989 324 ANGVKVVMATDLLA-LTILKPP---G--ELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGK 397 (985)
Q Consensus 324 ~~galliV~a~~~~-lg~l~~~---~--~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~ 397 (985)
++|+++++| +.++ +|..... . ....|+++. +|+| | +|++++++++.+.+.+.+.+ .+
T Consensus 263 ~~g~lli~D-Ev~~g~g~~g~~~~~~~~~~~~di~t~-sK~l--~-------iG~~~~~~~~~~~l~~~~~~-----~~- 325 (449)
T 2cjg_A 263 EFDALLIFD-EVQTGCGLTGTAWAYQQLDVAPDIVAF-GKKT--Q-------VCGVMAGRRVDEVADNVFAV-----PS- 325 (449)
T ss_dssp HTTCEEEEE-CTTTTTTTTSSSSTHHHHTCCCSEEEE-CGGG--S-------SEEEEECGGGGGSTTCTTTS-----TT-
T ss_pred HCCcEEEEe-ccccCCCccCcceeecccCCCceEEEe-cCcc--c-------EEEEEECHHHhhhhhhcccC-----Cc-
Confidence 999999995 3333 4322111 1 134687654 3877 4 46788888887765321110 00
Q ss_pred cceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CC-eEEcCC
Q 001989 398 PALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GT-VEVQGL 472 (985)
Q Consensus 398 ~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~-~~~~~~ 472 (985)
+...|.+. ++.+..+..+++ ..+.. +++.++..++.++++++|+++ +. +....
T Consensus 326 ---------------~~~~t~~~-n~~~~~aa~aal--~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~- 383 (449)
T 2cjg_A 326 ---------------RLNSTWGG-NLTDMVRARRIL--EVIEA---EGLFERAVQHGKYLRARLDELAADFPAVVLDPR- 383 (449)
T ss_dssp ---------------SSCCSSSS-CHHHHHHHHHHH--HHHHH---HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEE-
T ss_pred ---------------ccccCCCC-CHHHHHHHHHHH--HHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEe-
Confidence 00112111 112222222332 33222 345677788889999988764 21 22111
Q ss_pred CCcceEEEecCC---HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 473 PFFDTVKVKCAD---AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 473 ~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+...-+.+.+++ ..++.++|.++||.+.....+.+|++++..+|++|||+++++|.+
T Consensus 384 ~~g~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g~~~iRi~~~~~~t~e~i~~~l~~l~~ 443 (449)
T 2cjg_A 384 GRGLMCAFSLPTTADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRS 443 (449)
T ss_dssp EETTEEEEECSSHHHHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred eccEEEEEEECChHHHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 111224455554 678999999999988765568999999999999999999999974
No 421
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.39 E-value=1.9e-11 Score=141.36 Aligned_cols=325 Identities=13% Similarity=0.129 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHhcCCCccceecCCCCCC---CCCcHHHHHHHHhC-----CccccccCCChhhHhhhHHHHHHHHHHHHH
Q 001989 150 ESQMIEHMQKLASMNKVYKSFIGMGYYN---THVPPVILRNIMEN-----PAWYTQYTPYQAEIAQGRLESLLNFQTMIA 221 (985)
Q Consensus 150 e~e~~~~~~~l~~~n~~~~~~lG~g~y~---~~~p~~v~~~i~~~-----~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia 221 (985)
...+.+.+.++..++... + ++.|..+ ...|+.+.+++... +.....|.+.+ | ..++++.+|
T Consensus 18 ~~~~~~~~~~l~~~~~~i-~-l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~-----G----~~~lr~~ia 86 (422)
T 3d6k_A 18 REEVTAKYAELKAKNLSL-D-LTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLL-----G----IADIRELWA 86 (422)
T ss_dssp CHHHHHHHHHHHHTTCCE-E-CCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSS-----C----CHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCeE-e-CCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCC-----C----CHHHHHHHH
Confidence 345666777776654422 2 3555544 23444443333221 11123454321 1 235778999
Q ss_pred HhcCCCCcceeeccchHHHH--HHHHHHhhhhc---C-------CCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-
Q 001989 222 DLTGLPMSNASLLDEGTAAA--EAMAMCNNIQK---G-------KKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL- 288 (985)
Q Consensus 222 ~L~g~~~~~~sl~~~~ta~~--ea~~~a~~~~~---~-------~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~- 288 (985)
+++|.++.++.+++|++.++ ..+..++. .. + .+++|+++.-.|+.+...++. .|.+++.++.
T Consensus 87 ~~~~~~~~~i~~t~G~~~al~l~~~~~~l~-~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~----~g~~~~~v~~~ 161 (422)
T 3d6k_A 87 EALGLPADLVVAQDGSSLNIMFDLISWSYT-WGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEH----FGFEMINVPMT 161 (422)
T ss_dssp HHHTCCGGGEEECSSCHHHHHHHHHHHHHH-HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHH----HTCEEEEEEEE
T ss_pred HHhCCChhHEEEecchHHHHHHHHHHHHhc-CcccccccccccCCCCEEEEeCCccHHHHHHHHH----cCCEEEecCCC
Confidence 99999988999999988664 33333331 21 0 145899999999999888754 3777776653
Q ss_pred ------hhhhc-cCC-CEeEEE-EEcC-CCCeeeccHH---HHHHHHH-hCCcEEEEEecCccc-cCCC------CC---
Q 001989 289 ------KDIDY-KSG-DVCGVL-VQYP-GTEGEVLDYG---DFIKNAH-ANGVKVVMATDLLAL-TILK------PP--- 344 (985)
Q Consensus 289 ------~~l~~-l~~-~t~~V~-v~~p-n~~G~v~di~---~I~~~a~-~~galliV~a~~~~l-g~l~------~~--- 344 (985)
++|++ +++ ++++|+ +.+| |.+|.+.+.+ +|+++|+ ++|+++++| +..+. +... +.
T Consensus 162 ~~g~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~D-e~y~~~~~~~~~~~~~~~~~~ 240 (422)
T 3d6k_A 162 DEGPDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWD-NAYALHTLSDEFPIVHNVIEF 240 (422)
T ss_dssp TTEECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEE-CTTTTCBSSSCCCCCCCHHHH
T ss_pred CCCCCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEE-CCccccccCCCCCCCcChhhH
Confidence 45665 664 789888 4566 7899998765 8888888 899999995 33331 1111 11
Q ss_pred ----CcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 345 ----GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 345 ----~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
+..+.+|+++|. |. +.| |-.+|++++++++++.+... ++ .. +
T Consensus 241 ~~~~~~~~~~i~~~S~SK~-~~~----GlriG~~~~~~~l~~~l~~~-------------------------~~-~~--~ 287 (422)
T 3d6k_A 241 AQAAGNPNRFWFMSSTSKI-THA----GSGVSFFASSKENIEWYASH-------------------------AN-VR--G 287 (422)
T ss_dssp HHHTTCTTCEEEEEESTTT-SCT----TSSCEEEECCHHHHHHHHHH-------------------------HH-HH--C
T ss_pred hhccCCCCcEEEEcChhhh-cCc----ccceEEEEeCHHHHHHHHHH-------------------------HH-hh--c
Confidence 234667888887 65 433 33479999988877655100 00 00 1
Q ss_pred ccchhHHHHHHHHHHHHHhCc-----chHHHHHHHHHHHHHHHHHHHhc----CCCeEEcCCCCcceEEEecCC--HHHH
Q 001989 420 ICTAQALLANMAAMYAVYHGP-----EGLKTIAQRVHGLAGTFALGLKK----LGTVEVQGLPFFDTVKVKCAD--AHAI 488 (985)
Q Consensus 420 i~t~~~l~a~~aa~~l~~~g~-----~Gl~~i~~~~~~~a~~l~~~L~~----~g~~~~~~~~~~~~~~~~~~~--~~~v 488 (985)
.+++. + +..++. ..+.. +-++++.++..++.+++.+.|.+ +|++++..+....-+.+..+. ..++
T Consensus 288 ~~~~~-~-~q~a~~--~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~ 363 (422)
T 3d6k_A 288 IGPNK-L-NQLAHA--QFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPGTASRV 363 (422)
T ss_dssp SCCCH-H-HHHHHH--HHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTTCHHHH
T ss_pred CCCCH-H-HHHHHH--HHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCCCHHHH
Confidence 11111 1 112222 22222 12444555555555666555543 443665432111123344443 7788
Q ss_pred HHHHHHcCceeee----e------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 489 ASAAYKIEMNLRV----V------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 489 ~~~L~~~GI~~~~----~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.|.++||.+.. . ..+.+|+|++. +++++++++++.|..
T Consensus 364 ~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~-~~~e~i~~~~~~l~~ 413 (422)
T 3d6k_A 364 VELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL-PPVAELEVAMDGFAT 413 (422)
T ss_dssp HHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS-SCHHHHHHHHHHHHH
T ss_pred HHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCC-CCHHHHHHHHHHHHH
Confidence 8889999998754 1 13689999998 899999999999974
No 422
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.38 E-value=7.3e-12 Score=141.12 Aligned_cols=305 Identities=16% Similarity=0.134 Sum_probs=178.3
Q ss_pred eecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHh
Q 001989 169 SFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 169 ~~lG~g~y~~~~p~~v~~~i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~ 248 (985)
...|.|..+...++.+.+++.+... . ..|.+. ....++++.+|+++|.+.. .++.+||.+++.++.++
T Consensus 16 ~~~~~~~~~~g~~p~v~~ai~~~~~-~---~~~~~~------~~~~~l~~~la~~~~~~~~--i~~~~g~~a~~~a~~~~ 83 (359)
T 3pj0_A 16 KLGGNGPRNVGVLTEALQNIDDNLE-S---DIYGNG------AVIEDFETKIAKILGKQSA--VFFPSGTMAQQIALRIW 83 (359)
T ss_dssp ESSSSSCCBHHHHHHHTTTSCTTCB-C---CBTTBS------HHHHHHHHHHHHHHTCSEE--EEESCHHHHHHHHHHHH
T ss_pred hhcCCCccccCCCHHHHHHHHhhcc-c---CcccCC------HHHHHHHHHHHHHhCCCcE--EEeCCHHHHHHHHHHHH
Confidence 4456666555556666545444221 1 222221 2345788899999998763 56688887766665544
Q ss_pred hhhcCCCCE--EEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-------hhhhccCCCEeEEEEEcC-CCC-eeeccH--
Q 001989 249 NIQKGKKKT--FIIASNCHPQTIDICITRADGFDIKVVVSDL-------KDIDYKSGDVCGVLVQYP-GTE-GEVLDY-- 315 (985)
Q Consensus 249 ~~~~~~g~~--Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~-------~~l~~l~~~t~~V~v~~p-n~~-G~v~di-- 315 (985)
.. ++|+ |+++...|+....... .+...|++++.++. ++|++..+++++|++++| |++ |.+.|.
T Consensus 84 ~~---~g~~~vvi~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~~d~~~l~~~~~~~~~v~~~~p~n~~~G~~~~~~~ 159 (359)
T 3pj0_A 84 AD---RKENRRVAYHPLSHLEIHEQDG-LKELQQITPLLLGTANQLLTIDDIKSLREPVSSVLIELPQREIGGQLPAFEE 159 (359)
T ss_dssp HH---HHTCCEEEECTTCHHHHSSTTH-HHHHHCCEEEECSCTTSCCCHHHHHTCSSCCSEEEEESSBGGGTSBCCCHHH
T ss_pred Hh---cCCCcEEEEeccceeeehhcch-HHHhcCceEEecCCcCCCcCHHHHHhccCCceEEEEEecccCCCcccCCHHH
Confidence 22 4454 6677777765432110 01123788888765 334434568999999998 565 788665
Q ss_pred -HHHHHHHHhCCcEEEEEecCccccC---C-CCC--CcccceEEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCce
Q 001989 316 -GDFIKNAHANGVKVVMATDLLALTI---L-KPP--GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRI 387 (985)
Q Consensus 316 -~~I~~~a~~~galliV~a~~~~lg~---l-~~~--~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~ 387 (985)
++|+++|+++|+++++|. ....+. . .++ -..++|+++.+. |+|++| +.|+++.++++++++...
T Consensus 160 l~~l~~~~~~~~~~li~D~-a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~------~gg~~~~~~~l~~~~~~~- 231 (359)
T 3pj0_A 160 LEKISEYCHEQGISLHLDG-ARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGI------AGAILAGNDDFVQEAKIW- 231 (359)
T ss_dssp HHHHHHHHHHHTCEEEEEE-TTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCS------SCEEEEECHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCEEEEEC-cchhcchhhhCCCHHHhhccCCEEEEeccccCCCc------ceEEEECCHHHHHHHHHH-
Confidence 555999999999999953 222111 1 111 124789998887 767544 237888888887665100
Q ss_pred eeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCe
Q 001989 388 VGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 388 vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~ 467 (985)
+ ....++.+ +.... +..+...+... + +..++..++++++++.|+++.++
T Consensus 232 -------------------~----~~~~~~~~--~~~~~-~~a~~~~l~~~----~-~~~~~~~~~~~~l~~~L~~~~g~ 280 (359)
T 3pj0_A 232 -------------------K----RRYGGDLI--SLYPY-ILSADYYFEKR----I-GKMAEYFEAAKGLAERFNSCSGV 280 (359)
T ss_dssp -------------------H----HHTTCCCS--CCHHH-HHHHHHHHHHH----G-GGHHHHHHHHHHHHHHHHTSTTE
T ss_pred -------------------H----HHhCCCcc--hhHHH-HHHHHHHHHHH----H-HHhHHHHHHHHHHHHHHhhCCCc
Confidence 0 00001111 11111 11111111211 2 23345677889999999998338
Q ss_pred EEc-CCCCcceEEEecCC-----HHHHHHHHHHcCceeeee----c--CCeEEEEecc---CCCHHHHHHHHHHHh
Q 001989 468 EVQ-GLPFFDTVKVKCAD-----AHAIASAAYKIEMNLRVV----D--SNTVTASFDE---TTTLEDVDKLFIVFA 528 (985)
Q Consensus 468 ~~~-~~~~~~~~~~~~~~-----~~~v~~~L~~~GI~~~~~----~--~~~lris~t~---~~t~edId~li~aL~ 528 (985)
++. .++..+-+.++++. ..++.+.|.++||.+... . .+.+|++++. ..+.+++++.++.|.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~ 356 (359)
T 3pj0_A 281 KTVPEVPVSNMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLE 356 (359)
T ss_dssp EEESSSCSSSEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHH
T ss_pred eeeccCCcceEEEEEecCccchhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHH
Confidence 885 33333334444432 578889999999987542 1 2468888864 357888888888775
No 423
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.38 E-value=1.6e-11 Score=143.33 Aligned_cols=288 Identities=16% Similarity=0.143 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-hhc----CCCCEEEEcC-CCChhHHHHHHHhh-----cC--
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQK----GKKKTFIIAS-NCHPQTIDICITRA-----DG-- 278 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~~----~~g~~Vlv~~-~~H~s~~~~~~~~a-----~~-- 278 (985)
...++++.++++++.+..++.+++|||.++++++.+.+ +.+ .++++||+.+ ..|......+.... +.
T Consensus 94 ~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~ 173 (449)
T 3a8u_X 94 LSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFG 173 (449)
T ss_dssp HHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccC
Confidence 34567789999998777789999999998887775432 211 1568888755 56665554443210 01
Q ss_pred ---CCeEEEEeC-------------------chhhhc-cC----CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCC
Q 001989 279 ---FDIKVVVSD-------------------LKDIDY-KS----GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANG 326 (985)
Q Consensus 279 ---~gi~v~~v~-------------------~~~l~~-l~----~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~g 326 (985)
.|+..+.++ +++|++ +. +++++|++... |.+|.+.+ +++|.++|+++|
T Consensus 174 ~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~ 253 (449)
T 3a8u_X 174 QPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHN 253 (449)
T ss_dssp CCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHT
T ss_pred CCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhC
Confidence 244444322 344555 54 56777776543 45899888 999999999999
Q ss_pred cEEEEEecCc-cccCCCCC---Cccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcce
Q 001989 327 VKVVMATDLL-ALTILKPP---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPAL 400 (985)
Q Consensus 327 alliV~a~~~-~lg~l~~~---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~ 400 (985)
+++++| +.. ++|..... ..+| .|+++. +|+|++ |+--+|++++++++++.+... +..
T Consensus 254 ~~li~D-ev~~~~g~~g~~~~~~~~~~~~di~s~-sK~l~~----G~~~~G~~~~~~~~~~~l~~~---------~~~-- 316 (449)
T 3a8u_X 254 ILLVFD-EVITGFGRTGSMFGADSFGVTPDLMCI-AKQVTN----GAIPMGAVIASTEIYQTFMNQ---------PTP-- 316 (449)
T ss_dssp CEEEEE-CTTTTTTTTSSSSHHHHHTCCCSEEEE-CGGGGT----TSSCCEEEEEEHHHHHHHHTC---------SSC--
T ss_pred CEEEEe-ccccCccccCcchhhhhcCCCCCEEEE-cccccC----CCCceEEEEECHHHHHHhhcc---------Ccc--
Confidence 999995 344 45432221 1233 587743 388852 211267788888877665210 000
Q ss_pred eeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC--CCCcceE
Q 001989 401 RVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG--LPFFDTV 478 (985)
Q Consensus 401 ~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~--~~~~~~~ 478 (985)
. .+... ....|.+. ++.+..+..+++ ..+..+ ++.++..++.++++++|++++.+.++. .+...-+
T Consensus 317 ---~--~~~~~-~~~~t~~~-~~~~~aa~~aal--~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~ 384 (449)
T 3a8u_X 317 ---E--YAVEF-PHGYTYSA-HPVACAAGLAAL--CLLQKE---NLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAG 384 (449)
T ss_dssp ---T--TSCSS-CCCCTTTT-CHHHHHHHHHHH--HHHHHT---THHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEE
T ss_pred ---c--ccccc-cccCCCcc-cHHHHHHHHHHH--HHHHhc---CHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEE
Confidence 0 00000 00112111 111222222222 333222 466777888899999998753221110 0111123
Q ss_pred EEecCC---H-----HHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 479 KVKCAD---A-----HAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 479 ~~~~~~---~-----~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.++. . .++.+.|.++||.++... +.+|++++..+|++||++++++|.+
T Consensus 385 ~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRis~~~~~t~~~i~~~l~~l~~ 442 (449)
T 3a8u_X 385 AIQIAPRDGDAIVRPFEAGMALWKAGFYVRFGG-DTLQFGPTFNSKPQDLDRLFDAVGE 442 (449)
T ss_dssp EEEECCBTTBSSHHHHHHHHHHHHHTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEecCcccccccHHHHHHHHHHCCcEEecCC-CEEEEECCCcCCHHHHHHHHHHHHH
Confidence 344332 1 268999999999987653 8899999999999999999999974
No 424
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.36 E-value=1.2e-11 Score=142.37 Aligned_cols=273 Identities=13% Similarity=0.015 Sum_probs=166.6
Q ss_pred HHHHHHHHHhc-CC-----CCcceee--ccchHHHHHHHHHHhhhhcCCC-----CEEEEcCCCChhHHHHHHHhhcCCC
Q 001989 214 LNFQTMIADLT-GL-----PMSNASL--LDEGTAAAEAMAMCNNIQKGKK-----KTFIIASNCHPQTIDICITRADGFD 280 (985)
Q Consensus 214 ~e~q~~ia~L~-g~-----~~~~~sl--~~~~ta~~ea~~~a~~~~~~~g-----~~Vlv~~~~H~s~~~~~~~~a~~~g 280 (985)
.++++.+|+++ +. ++.++.+ +.|+|.+++.+....... ++| |+|+++...|+.+...++. .|
T Consensus 77 ~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~-~~g~~~~~d~Vl~~~p~y~~~~~~~~~----~g 151 (412)
T 1ajs_A 77 AEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARW-YNGTNNKDTPVYVSSPTWENHNGVFTT----AG 151 (412)
T ss_dssp HHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-SSSSSCCCSCEEEEESCCTHHHHHHHH----TT
T ss_pred HHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHh-CcCcCCCCCeEEEcCCCcHHHHHHHHH----cC
Confidence 45777888888 54 5567888 999998888775322211 267 9999999999998887754 45
Q ss_pred eE-EEEeCc----------hhhhc-cC---CCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCC
Q 001989 281 IK-VVVSDL----------KDIDY-KS---GDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTIL 341 (985)
Q Consensus 281 i~-v~~v~~----------~~l~~-l~---~~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l 341 (985)
.+ ++.++. +++++ ++ ++++++++.+| |.+|.+. ++++|+++|+++|+++++|.-...++.-
T Consensus 152 ~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~ 231 (412)
T 1ajs_A 152 FKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASG 231 (412)
T ss_dssp CSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTS
T ss_pred CceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCC
Confidence 66 555543 34554 43 36778878888 7799884 5779999999999999995321223211
Q ss_pred C---C---CCcc---c-ceEEEecC-ccccccCCCCCCc--EEEEEE---chhhHhcCCCceeeeeecCCCCcceeeecc
Q 001989 342 K---P---PGEL---G-ADIVVGSA-QRFGVPMGYGGPH--AAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQ 405 (985)
Q Consensus 342 ~---~---~~~~---G-aDi~v~s~-k~lg~P~~~GGP~--~G~l~~---~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~ 405 (985)
. . ...+ + -+|++.|. |.++ +|| +|++++ ++++++.+-.. +
T Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~------~~G~riG~~~~~~~~~~~~~~~~~~-----------------~- 287 (412)
T 1ajs_A 232 NLEKDAWAIRYFVSEGFELFCAQSFSKNFG------LYNERVGNLTVVAKEPDSILRVLSQ-----------------M- 287 (412)
T ss_dssp CHHHHTHHHHHHHHTTCCEEEEEECTTTSC------CGGGCEEEEEEECSSHHHHHHHHHH-----------------H-
T ss_pred cccccchHHHHHhccCCcEEEEEecccccC------CCCcceEEEEEecCCHHHHHHHHHH-----------------H-
Confidence 0 0 0111 2 23777887 7564 234 689998 77644332000 0
Q ss_pred cccccccccccCCCccchhHHHHHHHHHHHHHhC-----cchHHHHHHHHHHHHHHHHHHHhcCC---CeEEcCCCCcce
Q 001989 406 TREQHIRRDKATSNICTAQALLANMAAMYAVYHG-----PEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQGLPFFDT 477 (985)
Q Consensus 406 tre~~irre~atsni~t~~~l~a~~aa~~l~~~g-----~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~~~ 477 (985)
....+ .+.+..+.....+..+++ .... .+.++++.++..++.+++.+.|+++| ++++..+ ...-
T Consensus 288 ---~~~~~--~~~~~~~~~~~~a~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~~~ 359 (412)
T 1ajs_A 288 ---QKIVR--VTWSNPPAQGARIVARTL--SDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITD-QIGM 359 (412)
T ss_dssp ---HHHHH--TTTSSCCSHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHH-CCSS
T ss_pred ---HHHHh--cccCCCChHHHHHHHHHH--cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcC-CCce
Confidence 00001 111111112222222222 2110 23678888899999999999999875 3444321 1111
Q ss_pred EEE-ecCCHHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 478 VKV-KCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 478 ~~~-~~~~~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+ ..+ ...+.+.|.++||.+.. .+|++++. .|++|+++++++|.+
T Consensus 360 ~~~~~~~-~~~~~~~l~~~gv~v~~----~~Ris~~~-~~~~~i~~~~~~l~~ 406 (412)
T 1ajs_A 360 FSFTGLN-PKQVEYLINQKHIYLLP----SGRINMCG-LTTKNLDYVATSIHE 406 (412)
T ss_dssp EEECCCC-HHHHHHHHHTTCEECCT----TSEEEGGG-CCTTTHHHHHHHHHH
T ss_pred EEEeCCC-HHHHHHHHHhCCEEecC----CcEEEeee-CCHHHHHHHHHHHHH
Confidence 222 222 45555666678998864 36999984 489999999999874
No 425
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.36 E-value=4.8e-11 Score=139.71 Aligned_cols=276 Identities=15% Similarity=0.115 Sum_probs=165.6
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhh-hcCCCCE---EEEcCCCC-hhHHHHHHHhhcCCCeEEEEe-
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI-QKGKKKT---FIIASNCH-PQTIDICITRADGFDIKVVVS- 286 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~-~~~~g~~---Vlv~~~~H-~s~~~~~~~~a~~~gi~v~~v- 286 (985)
..++++.+|+++|.+ ++.+++|||.+.+.++.+... ...+||+ ||++ ..| +.+...+.. .|.+++.+
T Consensus 78 ~~~l~~~la~~~~~~--~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~-~~~~~~~~~~~~~----~g~~~~~~~ 150 (467)
T 1ax4_A 78 YYDLKDKAKELFNYD--YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFIS-NFHFDTTAAHVEL----NGCKAINIV 150 (467)
T ss_dssp HHHHHHHHHHHHCCC--EEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEE-SSCCHHHHHHHHH----TTCEEEECB
T ss_pred HHHHHHHHHHHcCCC--cEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEe-ccccchhhHHHhc----cCCceeccc
Confidence 345788999999975 588889999887777655421 0015787 8888 555 666666543 35555543
Q ss_pred -----------------Cchhhhc-cC----CCEeEEEEEcC-CCC-eee---ccHHHHHHHHHhCCcEEEEEecCccc-
Q 001989 287 -----------------DLKDIDY-KS----GDVCGVLVQYP-GTE-GEV---LDYGDFIKNAHANGVKVVMATDLLAL- 338 (985)
Q Consensus 287 -----------------~~~~l~~-l~----~~t~~V~v~~p-n~~-G~v---~di~~I~~~a~~~galliV~a~~~~l- 338 (985)
|+++|++ +. ++|++|++.+| |.+ |.+ +++++|+++|+++|+++++|. ....
T Consensus 151 ~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De-~~~~~ 229 (467)
T 1ax4_A 151 TEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDS-ARFCE 229 (467)
T ss_dssp CGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEEC-TTHHH
T ss_pred ccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEc-hhhhh
Confidence 2345555 54 37999999987 677 776 468899999999999999953 2222
Q ss_pred ----------cCCC-CCCcc------cceEEEecC-ccccccCCCCCCcEEEEEEc-h-hhHhcCCCceeeeeecCCCCc
Q 001989 339 ----------TILK-PPGEL------GADIVVGSA-QRFGVPMGYGGPHAAFLATS-Q-EYKRMMPGRIVGVSIDSSGKP 398 (985)
Q Consensus 339 ----------g~l~-~~~~~------GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~-~-~~~~~lp~~~vG~t~d~~g~~ 398 (985)
+... +..++ ++|+++.+. |.++.|. .|+++.+ + ++.+.+......+ .+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~------Gg~~~~~d~~~l~~~~~~~~~~~----~~-- 297 (467)
T 1ax4_A 230 NAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNI------GGLVAIRDNEEIFTLARQRCVPM----EG-- 297 (467)
T ss_dssp HHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSS------CEEEEESSCHHHHHHHHHHHHHH----TC--
T ss_pred cchhccccccccCCCchhhhhhhhccccceEEEeccccCCCCc------ceEEEeCCHHHHHHHHHhhcccc----cc--
Confidence 2111 11222 489988887 7665431 2778777 5 6665431000000 00
Q ss_pred ceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceE
Q 001989 399 ALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTV 478 (985)
Q Consensus 399 ~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~ 478 (985)
. ...++.+. ....++.+++ ..+.. ++..++..++.+++++.|++.| +++..+....-+
T Consensus 298 -----~--------~~~~~~~~---~~~~a~~~~l--~~~~~---~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~ 355 (467)
T 1ax4_A 298 -----F--------VTYGGLAG---RDMAAMVQGL--EEGTE---EEYLHYRIGQVKYLGDRLREAG-IPIQYPTGGHAV 355 (467)
T ss_dssp -----S--------TTTTTCCH---HHHHHHHHHH--HHTTC---HHHHHHHHHHHHHHHHHHHHTT-CCBCSSCCSSEE
T ss_pred -----c--------cccCCccc---hHHHHHHHHH--HHhhh---hhHHHHHHHHHHHHHHHHHhCC-CCcccCCCceEE
Confidence 0 01111111 1122222222 22211 1233334467788999998765 766532222223
Q ss_pred EEe-------cC--C--HHHHHHHH-HHcCceeeee-----------------cCCeEEEEecc-CCCHHHHHHHHHHHh
Q 001989 479 KVK-------CA--D--AHAIASAA-YKIEMNLRVV-----------------DSNTVTASFDE-TTTLEDVDKLFIVFA 528 (985)
Q Consensus 479 ~~~-------~~--~--~~~v~~~L-~~~GI~~~~~-----------------~~~~lris~t~-~~t~edId~li~aL~ 528 (985)
.+. .+ + ..++.++| .++||.+... ..+.+|+|+.. .+|++|||+++++|.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~ 435 (467)
T 1ax4_A 356 FVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALI 435 (467)
T ss_dssp EEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHH
T ss_pred EEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHH
Confidence 334 32 2 67899999 8889987541 02689999984 589999999999998
Q ss_pred CC
Q 001989 529 GG 530 (985)
Q Consensus 529 ~~ 530 (985)
..
T Consensus 436 ~~ 437 (467)
T 1ax4_A 436 GL 437 (467)
T ss_dssp TT
T ss_pred HH
Confidence 64
No 426
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.35 E-value=5.2e-11 Score=136.05 Aligned_cols=274 Identities=11% Similarity=0.007 Sum_probs=163.6
Q ss_pred HHHHHHHHhcCC------CCc--ceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 215 NFQTMIADLTGL------PMS--NASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 215 e~q~~ia~L~g~------~~~--~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
++++.+|++++. ++. ++.+++|+|.+++.++...... ++||+|+++...|+++...++. .|.+++.+
T Consensus 74 ~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~-~~gd~vl~~~p~~~~~~~~~~~----~g~~~~~~ 148 (397)
T 3fsl_A 74 CYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRY-FPESGVWVSDPTWENHVAIFAG----AGFEVSTY 148 (397)
T ss_dssp HHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH-CTTCCEEEESSCCHHHHHHHHH----TTCCEEEE
T ss_pred HHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhc-CCCCeEEEeCCCchhHHHHHHH----cCCceEEE
Confidence 456677777643 455 7889999998887764211111 3889999999999999888754 47777776
Q ss_pred Cc----------hhhhc-cC---CCEeEEEEEcC-CCCeee---ccHHHHHHHHHhCCcEEEEEecCccccCCCC-----
Q 001989 287 DL----------KDIDY-KS---GDVCGVLVQYP-GTEGEV---LDYGDFIKNAHANGVKVVMATDLLALTILKP----- 343 (985)
Q Consensus 287 ~~----------~~l~~-l~---~~t~~V~v~~p-n~~G~v---~di~~I~~~a~~~galliV~a~~~~lg~l~~----- 343 (985)
+. +++++ +. ++++++++.+| |.+|.+ +++++|+++|+++|+++++|. ..+......
T Consensus 149 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De-~~~~~~~~~~~~~~ 227 (397)
T 3fsl_A 149 PWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDI-AYQGFGAGMEEDAY 227 (397)
T ss_dssp CCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEE-SCTTSSSCTTGGGH
T ss_pred eeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEec-CchhhccCcccccH
Confidence 54 34555 54 67888888887 789988 567799999999999999953 322211110
Q ss_pred -----CCcccceEEEecC-ccccccCCCCCCcEEEEEE---chhhHhcCCCceeeeeecCCCCcceeeeccccccccccc
Q 001989 344 -----PGELGADIVVGSA-QRFGVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRD 414 (985)
Q Consensus 344 -----~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre 414 (985)
+...+-+++++|. |.++.| |-.+|++.+ ++++++.+-.. + .+.. |
T Consensus 228 ~~~~~~~~~~~~i~~~S~SK~~~~~----G~riG~~~~~~~~~~~~~~~~~~-----------------~---~~~~-~- 281 (397)
T 3fsl_A 228 AIRAIASAGLPALVSNSFSKIFSLY----GERVGGLSVMCEDAEAAGRVLGQ-----------------L---KATV-R- 281 (397)
T ss_dssp HHHHHHHTTCCEEEEEECTTTTTCG----GGCCEEEEEECSSHHHHHHHHHH-----------------H---HHHH-H-
T ss_pred HHHHHHhcCCCEEEEecccccccCc----CCCeeEEEEecCCHHHHHHHHHH-----------------H---HHHH-H-
Confidence 0123456778886 777532 234688764 23333322000 0 0000 0
Q ss_pred ccCCCccchhHHHHHHHHHH-HHH--hCcchHHHHHHHHHHHHHHHHHHHhcCC---CeEEcCCCCcceEEE-ecCCHHH
Q 001989 415 KATSNICTAQALLANMAAMY-AVY--HGPEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQGLPFFDTVKV-KCADAHA 487 (985)
Q Consensus 415 ~atsni~t~~~l~a~~aa~~-l~~--~g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~~~~~~-~~~~~~~ 487 (985)
..+++. +.....+..+.+- ..+ ...+.++++.++..++.+++.+.|++++ ++++..+ ...-+.+ ..+ ...
T Consensus 282 ~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~ 358 (397)
T 3fsl_A 282 RNYSSP-PNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLN-QRGMFSYTGLS-AAQ 358 (397)
T ss_dssp TTTSSC-CSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHHH-CCSSEEECCCC-HHH
T ss_pred hccCCC-CHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeecC-CceEEEecCCC-HHH
Confidence 011111 1111111111110 000 0134577888889999999999998873 2543311 1111222 222 566
Q ss_pred HHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 488 IASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 488 v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
+.+.|.++||.+.. .+ |+++... |++||++++++|.
T Consensus 359 ~~~~l~~~gi~v~~--g~--Ris~~~~-~~~~i~~~~~~l~ 394 (397)
T 3fsl_A 359 VDRLREEFGVYLIA--SG--RMCVAGL-NTANVQRVAKAFA 394 (397)
T ss_dssp HHHHHHTTCEECCT--TC--EEEGGGC-CTTTHHHHHHHHH
T ss_pred HHHHHHhCCEEECC--CC--eEEEEec-CHhhHHHHHHHHH
Confidence 77778888998864 22 8898754 4577999999886
No 427
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.34 E-value=1.4e-11 Score=141.82 Aligned_cols=270 Identities=12% Similarity=0.027 Sum_probs=161.9
Q ss_pred HHHHHHHHHhc-C-----CCCcceee--ccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001989 214 LNFQTMIADLT-G-----LPMSNASL--LDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 214 ~e~q~~ia~L~-g-----~~~~~~sl--~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~ 285 (985)
.++++.+|+++ + .++.++.+ +.|+|.+++.+....... ++||+|+++...|+.+...++ ..|.+++.
T Consensus 76 ~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~-~~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~ 150 (412)
T 1yaa_A 76 PSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKF-FPDKLVYLSKPTWANHMAIFE----NQGLKTAT 150 (412)
T ss_dssp HHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-CTTCCEEEEESCCTTHHHHHH----TTTCCEEE
T ss_pred HHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHh-CCCCEEEEeCCCCccHHHHHH----HcCceEEE
Confidence 35667777777 3 14567888 899998888764222211 278999999999999888765 34666666
Q ss_pred eCc----------hhhhc-cCC---CEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCC-----
Q 001989 286 SDL----------KDIDY-KSG---DVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK----- 342 (985)
Q Consensus 286 v~~----------~~l~~-l~~---~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~----- 342 (985)
++. +++++ +++ .++++++.+| |.+|.+. ++++|+++|+++|+++++|.-...+..-.
T Consensus 151 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~ 230 (412)
T 1yaa_A 151 YPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDA 230 (412)
T ss_dssp EECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHT
T ss_pred EeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchh
Confidence 544 34544 432 2445555787 7799885 57789999999999999953111221100
Q ss_pred -CC---Ccccc----eEEEecC-ccccccCCCCCCcEEEEE--E-----chh----hHhcCCCceeeeeecCCCCcceee
Q 001989 343 -PP---GELGA----DIVVGSA-QRFGVPMGYGGPHAAFLA--T-----SQE----YKRMMPGRIVGVSIDSSGKPALRV 402 (985)
Q Consensus 343 -~~---~~~Ga----Di~v~s~-k~lg~P~~~GGP~~G~l~--~-----~~~----~~~~lp~~~vG~t~d~~g~~~~~l 402 (985)
+. ..++. +|+++|. |.|+.| |-.+|+++ + +++ +++++.
T Consensus 231 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----GlriG~~~~~~~~~~~~~~~~~~l~~~l~------------------ 288 (412)
T 1yaa_A 231 YAVRLGVEKLSTVSPVFVCQSFAKNAGMY----GERVGCFHLALTKQAQNKTIKPAVTSQLA------------------ 288 (412)
T ss_dssp HHHHHHHHHTTTTCCEEEEEECTTTSCCG----GGCEEEEEEECCSCTTHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHhcCCCCcceEEEeccCCCCCCc----CCcceEEEEEecCCCCCHHHHHHHHHHHH------------------
Confidence 00 12343 5677776 766421 12268888 6 444 443320
Q ss_pred ecccccccccccccCCCcc-chhHHHHHHHHHHHHHhC-----cchHHHHHHHHHHHHHHHHHHHhcCC---CeEEcCCC
Q 001989 403 AMQTREQHIRRDKATSNIC-TAQALLANMAAMYAVYHG-----PEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQGLP 473 (985)
Q Consensus 403 ~l~tre~~irre~atsni~-t~~~l~a~~aa~~l~~~g-----~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~~~~ 473 (985)
...+ . .+.+ +.....+..+++ .... .+.++++.++..++.+++.+.|+++| ++++..+
T Consensus 289 -------~~~~--~-~~~~~~~~~~~a~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~- 355 (412)
T 1yaa_A 289 -------KIIR--S-EVSNPPAYGAKIVAKLL--ETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVN- 355 (412)
T ss_dssp -------HHHH--T-TTSSCCHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHH-
T ss_pred -------HHHh--h-ccCCCChHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeecc-
Confidence 0001 1 1111 112222222222 2110 24678888899999999999998875 2444321
Q ss_pred CcceEEE-ecCCHHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 474 FFDTVKV-KCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 474 ~~~~~~~-~~~~~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
...-+.+ .. ....+.+.|.++||.+.. .+|++++. .|++|+++++++|+.
T Consensus 356 ~~~~~~~~~~-~~~~~~~~l~~~gi~v~~----~~Ris~~~-~~~~~i~~~~~~l~~ 406 (412)
T 1yaa_A 356 QCGMFSFTGL-TPQMVKRLEETHAVYLVA----SGRASIAG-LNQGNVEYVAKAIDE 406 (412)
T ss_dssp CCSSEEECCC-CHHHHHHHHHHHCEECCT----TSEEEGGG-CCTTTHHHHHHHHHH
T ss_pred CceEEEeeCC-CHHHHHHHHHhCCEEecc----CcEEEEcc-CCHhHHHHHHHHHHH
Confidence 1111222 22 256675556678998864 57999985 589999999999874
No 428
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.33 E-value=5.3e-11 Score=138.28 Aligned_cols=277 Identities=14% Similarity=0.106 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHhcCCCC-cceeeccchHHHHHHHHHHh-hhhcCCCCEEE-EcCCCChhHHHHHHHhhcC-------C-
Q 001989 211 ESLLNFQTMIADLTGLPM-SNASLLDEGTAAAEAMAMCN-NIQKGKKKTFI-IASNCHPQTIDICITRADG-------F- 279 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~-~~~sl~~~~ta~~ea~~~a~-~~~~~~g~~Vl-v~~~~H~s~~~~~~~~a~~-------~- 279 (985)
+...++++.++++++... .++.+++||+.++++++.+. .+. ++++|| .+...|..+...+...... +
T Consensus 86 ~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 163 (439)
T 3dxv_A 86 APAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKAT--GRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKAD 163 (439)
T ss_dssp HHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHH--SCCEEEEETTCCCCSSHHHHCC-------------
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHh--CCCEEEEECCCCCCCcHHHHhhcCCCchhhccccC
Confidence 445567789999997655 57889999999888877543 233 455665 4556777666554210000 0
Q ss_pred --CeEEEEeC-------------chhhhc-c----CCCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEec
Q 001989 280 --DIKVVVSD-------------LKDIDY-K----SGDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATD 334 (985)
Q Consensus 280 --gi~v~~v~-------------~~~l~~-l----~~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~ 334 (985)
...+..++ +++|++ + .+++++|++..+ |..|.+.+ +++|.++|+++|+++++| +
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D-E 242 (439)
T 3dxv_A 164 GLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCD-E 242 (439)
T ss_dssp CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEE-C
T ss_pred CCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe-c
Confidence 00112222 345665 6 567888887765 56888888 999999999999999995 3
Q ss_pred Ccc-ccCCCCC---Cc--ccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccccc
Q 001989 335 LLA-LTILKPP---GE--LGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTRE 408 (985)
Q Consensus 335 ~~~-lg~l~~~---~~--~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre 408 (985)
.++ ++..... .. ...|++. -+|.|++ |-.+|++++++++++.+....
T Consensus 243 ~~~g~g~~g~~~~~~~~~~~~di~s-~sK~~~~-----G~riG~~~~~~~~~~~~~~~~--------------------- 295 (439)
T 3dxv_A 243 VKVGLARSGRLHCFEHEGFVPDILV-LGKGLGG-----GLPLSAVIAPAEILDCASAFA--------------------- 295 (439)
T ss_dssp TTTCTTTTSSSSGGGGTTCCCSEEE-ECGGGGT-----TSCCEEEEEEHHHHTSCSSSS---------------------
T ss_pred cccCCCcCchhhHHHhcCCCCCEEE-EcchhcC-----CcceEEEEECHHHHhhhcCCC---------------------
Confidence 333 3211111 12 2357762 2488862 334689999998887662110
Q ss_pred ccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEc-CCCCcceEEEec-
Q 001989 409 QHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQ-GLPFFDTVKVKC- 482 (985)
Q Consensus 409 ~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~-~~~~~~~~~~~~- 482 (985)
...| + .++.+..+..+++ ..+.. +++.++..++.+++++.|+++ +.+... ....+-.+.+..
T Consensus 296 -----~~~t-~-~~~~~~~aa~aal--~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 363 (439)
T 3dxv_A 296 -----MQTL-H-GNPISAAAGLAVL--ETIDR---DDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCD 363 (439)
T ss_dssp -----CCTT-T-TCHHHHHHHHHHH--HHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEE
T ss_pred -----cCCC-c-ccHHHHHHHHHHH--HHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecC
Confidence 0111 1 1112222222222 32222 345566667777777777653 222222 111111222210
Q ss_pred -----CC---HHHHHHHHHHcCceeeeec--CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 483 -----AD---AHAIASAAYKIEMNLRVVD--SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 -----~~---~~~v~~~L~~~GI~~~~~~--~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+. ..++.+.|.++||.+.... ++.+|++++..+|++|+++++++|.+
T Consensus 364 ~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~ 420 (439)
T 3dxv_A 364 RQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDR 420 (439)
T ss_dssp TTTTEECHHHHHHHHHHHHHHTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22 6788999999999887653 48899999999999999999999974
No 429
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.33 E-value=1.3e-11 Score=141.98 Aligned_cols=299 Identities=12% Similarity=0.049 Sum_probs=169.1
Q ss_pred hhhHHHHHHHHHHHHHHHhCCC--cc--c-eecCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCcccHHHHHHCC
Q 001989 627 AQGYQEMFNNLGEWLCTITGFD--SF--S-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCG 701 (985)
Q Consensus 627 ~~G~~~~~~e~~~~la~l~G~~--~~--~-~~~~sGa~a~~a~l~air~~~~~~g~~~~~~IIv~~~~Hg~~~~~a~~~G 701 (985)
.+|..++.+.+.+++....+.. .. . ++..+|++|...++.++.. ..+ |+|+++++.+..+....+..|
T Consensus 71 ~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~------~~~-d~Vlv~~P~y~~~~~~~~~~g 143 (405)
T 3k7y_A 71 GNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKM------LNV-ETLYVTNPPYINHVNMIESRG 143 (405)
T ss_dssp TSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHT------TTC-CEEEEESSCCHHHHHHHHTTT
T ss_pred CCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHh------cCC-CEEEEeCCCCHhHHHHHHHcC
Confidence 4576655555555543322221 12 2 3444455555433333321 126 999999997777777788999
Q ss_pred cEEEEEcC-CC-CCCCCHHHHHHHHHhcCCCEEEEEEEcC--CCccccc--cCHHHHHHHHHHcCCEEEEEccccc-ccc
Q 001989 702 MKIVSVGT-DA-KGNINIEELRKAAEANRDNLSTLMVTYP--STHGVYE--EGIDEICKIIHDNGGQVYMDGANMN-AQV 774 (985)
Q Consensus 702 ~~vv~v~~-d~-~g~iD~e~L~~~i~~~~~~t~~Vvv~~p--n~~G~i~--~di~eI~~la~~~galliVD~a~~~-~~~ 774 (985)
++++.+|+ ++ ++.+|+++|++++++. +++++|+++.| |++|.+. ..+++|.++|+++|++++.|.++.. ..+
T Consensus 144 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~-~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~ 222 (405)
T 3k7y_A 144 FNLKYINFFDYNLIDINYDLFLNDLRNI-PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHT 222 (405)
T ss_dssp CEEEEECCEETTTTEECHHHHHHHHHHS-CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSS
T ss_pred CeEEEEeccccccCCcCHHHHHHHHHhC-CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCC
Confidence 99999998 43 4789999999999742 35667777654 6899885 2578899999999999999988731 111
Q ss_pred CCCC---C----CccCC-cEEEeCCcccccccCCCCCCceEEEEE---cccccCcCCCCccccCCCCCCCCCCCCCCCCC
Q 001989 775 GLTS---P----GYIGA-DVCHLNLHKTFCIPHGGGGPGMGPIGV---KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIA 843 (985)
Q Consensus 775 ~l~~---p----g~~g~-Di~~~s~hK~l~~p~g~GGPg~G~i~~---~~~l~~~lp~~~~g~~~~~~~~~~~~~~~~i~ 843 (985)
+... + ...+. -+++.|+.|+|++| |.++|++++ ++++...+...+... .....++.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~----GlRiG~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~ 290 (405)
T 3k7y_A 223 NLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLY----GERAGALHIVCKNQEEKKIVFNNLCFI--------VRKFYSSPV 290 (405)
T ss_dssp STTGGGHHHHHHHTTTCCEEEEEECTTTSCCT----TTTEEEEEEECSSHHHHHHHHHHHHHH--------HHTTTSSCC
T ss_pred CcccchHHHHHHHhcCCcEEEEeeCCccCCCc----cccceEEEEEeCCHHHHHHHHHHHHHH--------HhcccCCCc
Confidence 1000 0 01122 25677888988764 899999864 233322110000000 000111111
Q ss_pred CcchhhhHHHHHHHHHHHH--hc---HHHHHHHHHHHHHHHHHHHHHhh----c-cCC--eeecCCCCceeeEEEEEecC
Q 001989 844 AAPWGSALILPISYTYIAM--MG---SKGLTEASKIAILNANYMAKRLE----K-HYP--ILFRGVNGTVAHEFIVDLRG 911 (985)
Q Consensus 844 s~~~g~~~~~~~a~a~l~~--lg---~eGl~~~~~~~~~~a~~l~~~L~----~-g~~--l~~~~~~~~~~~~~iv~~~~ 911 (985)
..++. ++..++.. ++ .+.++++.++..++++++.+.|+ + +.. +.+..+.+.++ +.+.++
T Consensus 291 --~~~q~----~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f--~~~~l~- 361 (405)
T 3k7y_A 291 --IHTNR----ILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLF--SFVPLL- 361 (405)
T ss_dssp --HHHHH----HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSE--EECGGG-
T ss_pred --HHHHH----HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEE--EecCCC-
Confidence 11221 11122221 11 12344555567888899999998 6 321 22222333333 122222
Q ss_pred ccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 912 LKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 912 ~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
. +.+++|.++||.+.. +. ||++.- .+.++|++ ++++|++++.+
T Consensus 362 --------~-~~~~~L~~~gV~v~p------~~-Ris~a~-~~~~~i~~--~~~~i~~~~~~ 404 (405)
T 3k7y_A 362 --------A-KIAEHLKTHHIYIIN------NG-RINVSG-ITKNNVDY--IADKICLSLSQ 404 (405)
T ss_dssp --------G-GGTTTTTTTTEECCT------TS-EEEGGG-CCTTHHHH--HHHHHHHHHHC
T ss_pred --------H-HHHHHHHHCCEeecC------CC-eEEEec-cCHHHHHH--HHHHHHHHHhh
Confidence 1 345667667887632 22 888753 45688999 77888887764
No 430
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.31 E-value=2e-10 Score=132.51 Aligned_cols=276 Identities=12% Similarity=0.102 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHhcCCCC-cceeeccchHHHHHHHHH-HhhhhcCCCCEEEEcC-CCChhHHHHHHHhh-c-----CC---
Q 001989 212 SLLNFQTMIADLTGLPM-SNASLLDEGTAAAEAMAM-CNNIQKGKKKTFIIAS-NCHPQTIDICITRA-D-----GF--- 279 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~-~~~sl~~~~ta~~ea~~~-a~~~~~~~g~~Vlv~~-~~H~s~~~~~~~~a-~-----~~--- 279 (985)
...++++.+|++++.+. .++.+++|++.++++++. +..+. +++ +|++.+ ..|......+.... + .+
T Consensus 85 ~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~-~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~ 162 (426)
T 1sff_A 85 PYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT-KRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLM 162 (426)
T ss_dssp HHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH-TCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCC
T ss_pred HHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhh-CCC-eEEEECCCcCCCchHhhhhcCCccccccccCCC
Confidence 34567789999993233 678899999988887765 32233 244 777665 55555554443210 0 11
Q ss_pred --CeEEEEeC-----------chhhhc-cC-----CCEeEEEEE-cCCCCeeecc----HHHHHHHHHhCCcEEEEEecC
Q 001989 280 --DIKVVVSD-----------LKDIDY-KS-----GDVCGVLVQ-YPGTEGEVLD----YGDFIKNAHANGVKVVMATDL 335 (985)
Q Consensus 280 --gi~v~~v~-----------~~~l~~-l~-----~~t~~V~v~-~pn~~G~v~d----i~~I~~~a~~~galliV~a~~ 335 (985)
++..+.++ +++|++ +. +++++|+++ .++.+|.+.+ +++|.++|+++|+++++| +.
T Consensus 163 ~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~D-e~ 241 (426)
T 1sff_A 163 PGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIAD-EV 241 (426)
T ss_dssp CSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEE-CT
T ss_pred CCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEe-ch
Confidence 13222222 234554 53 578888775 3444997777 999999999999999995 33
Q ss_pred cc-ccCCCCC---Ccc--cceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccc
Q 001989 336 LA-LTILKPP---GEL--GADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQ 409 (985)
Q Consensus 336 ~~-lg~l~~~---~~~--GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~ 409 (985)
.+ ++..... ..+ .+|++.. +|.|+. |--+|++++++++++.+... .
T Consensus 242 ~~~~~~~g~~~~~~~~~~~~di~s~-sK~~~~-----GlriG~~~~~~~~~~~l~~~----------~------------ 293 (426)
T 1sff_A 242 QSGAGRTGTLFAMEQMGVAPDLTTF-AKSIAG-----GFPLAGVTGRAEVMDAVAPG----------G------------ 293 (426)
T ss_dssp TTTTTTTSSSSGGGGTTSCCSEEEE-CGGGGT-----SSCCEEEEEEHHHHTTSCTT----------S------------
T ss_pred hhccCcccchhhhhhcCCCCCEEEE-cccccC-----CCceEEEEEcHHHHhhhccC----------C------------
Confidence 33 3211111 122 3677633 387752 22358999999887766210 0
Q ss_pred cccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEcCCCCcceEEEec---
Q 001989 410 HIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQGLPFFDTVKVKC--- 482 (985)
Q Consensus 410 ~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~~~~~~~~--- 482 (985)
...|.+. ++....+..+++ .++..+ ++.++..++.++++++|+++ +.+.... +...-+.+.+
T Consensus 294 ----~~~~~~~-~~~~~~a~~aal--~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~ 362 (426)
T 1sff_A 294 ----LGGTYAG-NPIACVAALEVL--KVFEQE---NLLQKANDLGQKLKDGLLAIAEKHPEIGDVR-GLGAMIAIELFED 362 (426)
T ss_dssp ----BCCSSSS-CHHHHHHHHHHH--HHHHHT---THHHHHHHHHHHHHHHHHHHHHTCTTEEEEE-EETTEEEEEEBGG
T ss_pred ----cCcCCCC-CHHHHHHHHHHH--HHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-EEEEEEEEEEecC
Confidence 0111111 112222333333 333222 35567777888888888763 2122211 1111233333
Q ss_pred -----CC---HHHHHHHHHHcCceeeeec--CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 483 -----AD---AHAIASAAYKIEMNLRVVD--SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 -----~~---~~~v~~~L~~~GI~~~~~~--~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+. ..++.++|.++||.+.... ++.+|++++..+|++|+++++++|.+
T Consensus 363 ~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 419 (426)
T 1sff_A 363 GDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQ 419 (426)
T ss_dssp GCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHCCcEEecCCCCCCEEEEECCccCCHHHHHHHHHHHHH
Confidence 22 6789999999999887643 58899999999999999999999974
No 431
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.31 E-value=7.9e-11 Score=136.09 Aligned_cols=271 Identities=11% Similarity=0.032 Sum_probs=163.1
Q ss_pred HHHHHHHHhcCC------CCc--ceeeccchHHHHHHHH--HHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001989 215 NFQTMIADLTGL------PMS--NASLLDEGTAAAEAMA--MCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 215 e~q~~ia~L~g~------~~~--~~sl~~~~ta~~ea~~--~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~ 284 (985)
++++.++++++. ++. ++.++.|+|.+++.++ +++ . ++||+|++++..|+++...++. .|.+++
T Consensus 96 ~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~-~--~~gd~Vlv~~p~~~~~~~~~~~----~g~~~~ 168 (420)
T 4f4e_A 96 AYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRT-L--NPKAKVAISDPSWENHRALFDM----AGFEVV 168 (420)
T ss_dssp HHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHH-H--CTTCCEEEEESCCHHHHHHHHH----TTCCEE
T ss_pred HHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHH-h--CCCCEEEEeCCCcHhHHHHHHH----cCCeEE
Confidence 455666666633 344 6888899998887763 232 2 3889999999999999888754 466666
Q ss_pred EeCc----------hhhhc-cC---CCEeEEEEEcC-CCCeee---ccHHHHHHHHHhCCcEEEEEecCccccCCCC---
Q 001989 285 VSDL----------KDIDY-KS---GDVCGVLVQYP-GTEGEV---LDYGDFIKNAHANGVKVVMATDLLALTILKP--- 343 (985)
Q Consensus 285 ~v~~----------~~l~~-l~---~~t~~V~v~~p-n~~G~v---~di~~I~~~a~~~galliV~a~~~~lg~l~~--- 343 (985)
.++. +++++ +. ++++++++.+| |.+|.+ +++++|+++|+++|+++++|. ..+......
T Consensus 169 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De-~y~~~~~~~~~~ 247 (420)
T 4f4e_A 169 AYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDI-AYQGFGESIEAD 247 (420)
T ss_dssp EEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEE-SCTTSSSCTTGG
T ss_pred EeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcc-ccccccCCcchh
Confidence 6654 34555 54 67888888887 789988 457899999999999999953 222111110
Q ss_pred -------CCcccceEEEecC-ccccccCCCCCCcEEEEEE---chhhHhcCCCceeeeeecCCCCcceeeeccccccccc
Q 001989 344 -------PGELGADIVVGSA-QRFGVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIR 412 (985)
Q Consensus 344 -------~~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~ir 412 (985)
++..+-+|+++|. |.|+.| |-.+|++++ ++++++.+-.. + +...
T Consensus 248 ~~~~~~~~~~~~~~i~~~S~SK~~~~~----G~RiG~~~~~~~~~~~~~~~~~~-----------------~----~~~~ 302 (420)
T 4f4e_A 248 AAAVRLFAAANLNVFVSSSFSKSFSLY----GERVGALSIITDSKDEAARVLSQ-----------------L----KRVI 302 (420)
T ss_dssp GHHHHHHHHTTCCEEEEEECTTTTTCG----GGCEEEEEEECSSHHHHHHHHHH-----------------H----HHHH
T ss_pred hHHHHHHHhcCCCEEEEEeCCccCcCc----CCCcEEEEEEcCCHHHHHHHHHH-----------------H----HHHH
Confidence 1134567888887 877532 223688764 33433322000 0 0000
Q ss_pred ccccCCCccchhHHHHHHHHHHHHHh-----CcchHHHHHHHHHHHHHHHHHHHhcCC---CeEEcCCCCcceEEE-ecC
Q 001989 413 RDKATSNICTAQALLANMAAMYAVYH-----GPEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQGLPFFDTVKV-KCA 483 (985)
Q Consensus 413 re~atsni~t~~~l~a~~aa~~l~~~-----g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~~~~~~-~~~ 483 (985)
| ..+++.. .+...+++.++... ..+.++++.++..++.+++.+.|++++ ++++.. +...-+.+ ..+
T Consensus 303 ~-~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~~ 377 (420)
T 4f4e_A 303 R-TNYSNPP---THGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFIN-AQRGMFSYSGLT 377 (420)
T ss_dssp H-TTTSSCC---SHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHH-HSCSSEEECCCC
T ss_pred h-cccCCCC---HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEC-CCccEEEEeCCC
Confidence 0 1122221 11111121111110 123467888889999999999999872 244331 11111222 222
Q ss_pred CHHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 484 DAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 484 ~~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
...+.+.|.++||.+.. + .|+++... |+++|++++++|++
T Consensus 378 -~~~~~~~l~~~gI~v~~---~-~Ris~~~~-~~~~i~~~~~~l~~ 417 (420)
T 4f4e_A 378 -SAQVDRLREEFGIYAVS---T-GRICVAAL-NTRNLDVVANAIAA 417 (420)
T ss_dssp -HHHHHHHHHHHCEECCT---T-SEEEGGGC-CTTTHHHHHHHHHH
T ss_pred -HHHHHHHHHhCCEEecC---C-CeEEEecC-CHHHHHHHHHHHHH
Confidence 56677778888998864 2 39998743 56679999998863
No 432
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.31 E-value=6.7e-11 Score=139.98 Aligned_cols=276 Identities=12% Similarity=0.119 Sum_probs=168.5
Q ss_pred hhHHHHHHHHHHHHHHhc-CC--CCcceeeccchHHHHHHHHHHhhhhcCCC----CEEEEcCCCChhHHHHHHHhhcCC
Q 001989 207 QGRLESLLNFQTMIADLT-GL--PMSNASLLDEGTAAAEAMAMCNNIQKGKK----KTFIIASNCHPQTIDICITRADGF 279 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~-g~--~~~~~sl~~~~ta~~ea~~~a~~~~~~~g----~~Vlv~~~~H~s~~~~~~~~a~~~ 279 (985)
+|..+.-.+..+.+.+.. |. ++.++.+++|++.++..++.++. ++| |+|+++.-.|+.+...++. .
T Consensus 129 ~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~---~~gd~~~d~Vlv~~p~y~~~~~~~~~----~ 201 (498)
T 3ihj_A 129 QGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILV---SGGGKSRTGVMIPIPQYPLYSAVISE----L 201 (498)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHC---CCCGGGSEEEEEEESCCTHHHHHHHH----T
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHc---CCCCCCCCEEEEeCCCchhHHHHHHH----c
Confidence 444343333344444444 34 56789999999987776665542 244 5999999999999988754 4
Q ss_pred CeEEEEeCc----------hhhhc-cCC-----CEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCcccc
Q 001989 280 DIKVVVSDL----------KDIDY-KSG-----DVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALT 339 (985)
Q Consensus 280 gi~v~~v~~----------~~l~~-l~~-----~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg 339 (985)
|.+++.++. ++|++ +.+ ++++|++.+| |++|.+. ++++|+++|+++|+++++| +..+..
T Consensus 202 g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~D-e~y~~~ 280 (498)
T 3ihj_A 202 DAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLAD-EVYQDN 280 (498)
T ss_dssp TCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE-CTTTTC
T ss_pred CCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEE-cCcccc
Confidence 777776643 34554 443 5899999998 7899884 5788999999999999995 343332
Q ss_pred CCCC---CC-------cccc-------eEEEecC-ccc-cccCCCCCCcEEEEEE---chhhHhcCCCceeeeeecCCCC
Q 001989 340 ILKP---PG-------ELGA-------DIVVGSA-QRF-GVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGK 397 (985)
Q Consensus 340 ~l~~---~~-------~~Ga-------Di~v~s~-k~l-g~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~t~d~~g~ 397 (985)
.... .. +++. -|+++|. |.| |.| |+ .+|++.+ ++++++.+-
T Consensus 281 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~-G~---R~G~~~~~~~~~~l~~~l~------------- 343 (498)
T 3ihj_A 281 VYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGEC-GY---RGGYMEVINLHPEIKGQLV------------- 343 (498)
T ss_dssp BCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCS-SS---CCEEEEEESCCHHHHHHHH-------------
T ss_pred ccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCc-cc---ceEEEEEecCCHHHHHHHH-------------
Confidence 2211 10 1121 1567776 888 323 33 3478874 556655430
Q ss_pred cceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCc------------chHHHHHHHHHHHHHHHHHHHhcCC
Q 001989 398 PALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGP------------EGLKTIAQRVHGLAGTFALGLKKLG 465 (985)
Q Consensus 398 ~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~------------~Gl~~i~~~~~~~a~~l~~~L~~~g 465 (985)
.. ...+.|++......++ ..+.. +-++++.++..++++++.+.|+++.
T Consensus 344 ---------------~~-~~~~~~~~~~~q~a~~----~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~ 403 (498)
T 3ihj_A 344 ---------------KL-LSVRLCPPVSGQAAMD----IVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVP 403 (498)
T ss_dssp ---------------HH-HHHSCCCCHHHHHHHH----HHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred ---------------HH-HhccCCCCHHHHHHHH----HHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 00 0122343332222222 12211 1135666778899999999999983
Q ss_pred CeEEcCC--CCcceEEEecC----------C--HHH--HHHHHHHcCceeeee-------cCCeEEEEeccCCCHHHHHH
Q 001989 466 TVEVQGL--PFFDTVKVKCA----------D--AHA--IASAAYKIEMNLRVV-------DSNTVTASFDETTTLEDVDK 522 (985)
Q Consensus 466 ~~~~~~~--~~~~~~~~~~~----------~--~~~--v~~~L~~~GI~~~~~-------~~~~lris~t~~~t~edId~ 522 (985)
|+++..+ ..+.-+.+..+ + ..+ +.+.|.++||.+... ..+.+|+++. .+++++++
T Consensus 404 g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~--~~~e~l~~ 481 (498)
T 3ihj_A 404 GIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTIL--PPVEKLKT 481 (498)
T ss_dssp TEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECC--SCHHHHHH
T ss_pred CcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeC--CCHHHHHH
Confidence 3887632 12111123322 1 233 355666789987542 1358999994 79999999
Q ss_pred HHHHHhC
Q 001989 523 LFIVFAG 529 (985)
Q Consensus 523 li~aL~~ 529 (985)
+++.|..
T Consensus 482 ~i~~L~~ 488 (498)
T 3ihj_A 482 VLQKVKD 488 (498)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998874
No 433
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.31 E-value=1.6e-10 Score=135.33 Aligned_cols=283 Identities=14% Similarity=0.095 Sum_probs=168.3
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHH-hhh--hc--CCCCEEEEcC-CCChhHHHHHHHhh---------c
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMC-NNI--QK--GKKKTFIIAS-NCHPQTIDICITRA---------D 277 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a-~~~--~~--~~g~~Vlv~~-~~H~s~~~~~~~~a---------~ 277 (985)
..++++.++++++.+...+.+++|||.++++++.+ +.+ .+ .++++||+.+ ..|......+..-. .
T Consensus 120 ~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 199 (457)
T 3tfu_A 120 AARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWT 199 (457)
T ss_dssp HHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC--------
T ss_pred HHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCccccccccc
Confidence 34678899999987777898999999998887743 322 01 1345777654 56655544432100 0
Q ss_pred --CCCeEEEEe--------Cchhhhc-cC---CCEeEEEEEc-C-CCCeeecc----HHHHHHHHHhCCcEEEEEecCc-
Q 001989 278 --GFDIKVVVS--------DLKDIDY-KS---GDVCGVLVQY-P-GTEGEVLD----YGDFIKNAHANGVKVVMATDLL- 336 (985)
Q Consensus 278 --~~gi~v~~v--------~~~~l~~-l~---~~t~~V~v~~-p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~- 336 (985)
..++..... ++++|++ ++ +++++|++.. + |..|.+.+ +++|.++|+++|+++++| +..
T Consensus 200 ~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~D-Ev~~ 278 (457)
T 3tfu_A 200 DVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFD-EIAT 278 (457)
T ss_dssp --CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEE-CTTT
T ss_pred CCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEE-cCcc
Confidence 112333222 2345665 55 6788888776 5 67888765 999999999999999995 332
Q ss_pred cccCCCCC---Ccc--cceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccc
Q 001989 337 ALTILKPP---GEL--GADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHI 411 (985)
Q Consensus 337 ~lg~l~~~---~~~--GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~i 411 (985)
.+|-.... ..+ ..|+++. +|.|++ |...+|++.+++++.+.+... ..+. +.
T Consensus 279 g~gr~G~~~a~~~~~~~pdiit~-sK~l~g----G~~~lG~v~~~~~i~~~~~~~-------~~~~--~~---------- 334 (457)
T 3tfu_A 279 GFGRTGALFAADHAGVSPDIMCV-GKALTG----GYLSLAATLCTADVAHTISAG-------AAGA--LM---------- 334 (457)
T ss_dssp TTTTTSSSSTHHHHTCCCSEEEE-CGGGGT----TSSCCEEEEEEHHHHHHHHHS-------SSCS--CC----------
T ss_pred CCccccchhHhHhcCCCceEEEE-ChhhhC----CCcceEEEEEcHHHHHHhhcc-------CCCc--ee----------
Confidence 23321111 112 3577633 487642 324578888999887765100 0000 00
Q ss_pred cccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC---CeEEc-CCCCcceEEEecCC-HH
Q 001989 412 RRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQ-GLPFFDTVKVKCAD-AH 486 (985)
Q Consensus 412 rre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~-~~~~~~~~~~~~~~-~~ 486 (985)
...|.+. ++.+..+..++ +..+..+ ++.++..++.++++++|+++. ++..+ ....+-.+.+..+. +.
T Consensus 335 --~~~t~~~-n~~a~aaa~aa--L~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~l~~~~~~~ 406 (457)
T 3tfu_A 335 --HGPTFMA-NPLACAVSVAS--VELLLGQ---DWRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGVIECDRPVDLA 406 (457)
T ss_dssp --CCCTTTT-CHHHHHHHHHH--HHHHHTS---CHHHHHHHHHHHHHHHHGGGGGSTTEEEEEECSSCEEEEESSCCCHH
T ss_pred --EecCCCc-CHHHHHHHHHH--HHHHhhh---HHHHHHHHHHHHHHHHHHHHhcCCCeeeeecCCeEEEEEECCcccHH
Confidence 0111111 11112222222 2333233 456667778889999888752 23322 11122223332222 78
Q ss_pred HHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 487 AIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 487 ~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++.+.|.++||.++.. .+.+|+++....|+||||+++++|++
T Consensus 407 ~~~~~l~~~Gv~v~~~-~~~lRi~p~~~~t~eei~~~l~~L~~ 448 (457)
T 3tfu_A 407 VATPAALDRGVWLRPF-RNLVYAMPPYICTPAEITQITSAMVE 448 (457)
T ss_dssp HHHHHHHHTTEECCCB-TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCeEEEec-CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 9999999999988753 57899999999999999999999974
No 434
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.31 E-value=5.1e-12 Score=144.43 Aligned_cols=272 Identities=10% Similarity=0.081 Sum_probs=165.9
Q ss_pred HHHHHHHHhc-CC--CCcceee--ccchHHHHHHHHHHhh-hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001989 215 NFQTMIADLT-GL--PMSNASL--LDEGTAAAEAMAMCNN-IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 215 e~q~~ia~L~-g~--~~~~~sl--~~~~ta~~ea~~~a~~-~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~ 288 (985)
++++.+|+++ |. ++.++.+ +.|+|.++++++.++. +. +||+|+++...|+.+...++. .|.+++.++.
T Consensus 73 ~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~----~g~~~~~~~~ 146 (394)
T 2ay1_A 73 EFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMAN--PDLRVFVSDPTWPNHVSIMNF----MGLPVQTYRY 146 (394)
T ss_dssp HHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHC--TTCCEEEEESCCHHHHHHHHH----HTCCEEEEEC
T ss_pred HHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHHhcC--CCCEEEEcCCCChhHHHHHHH----cCCceEEEec
Confidence 4667777776 55 5677887 8999988888775443 23 789999999999998887754 3555555543
Q ss_pred ----------hhhhc-cCC---CEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCC------CC
Q 001989 289 ----------KDIDY-KSG---DVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK------PP 344 (985)
Q Consensus 289 ----------~~l~~-l~~---~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~------~~ 344 (985)
+++++ +++ +++++++.+| |.+|.+. ++++|+++|+++|+++++|. ..+..... +.
T Consensus 147 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~ 225 (394)
T 2ay1_A 147 FDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDL-AYQGFGDGLEEDAAGT 225 (394)
T ss_dssp EETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEE-CCTTSSSCHHHHHHHH
T ss_pred ccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEec-CccccccCcccchHHH
Confidence 34554 432 3666777787 7899886 46789999999999999953 22211110 00
Q ss_pred ---Ccccce-EEEecC-ccccccCCCCCCcEEEEEE---chhhHhcCCCceeeeeecCCCCcceeeeccccccccccccc
Q 001989 345 ---GELGAD-IVVGSA-QRFGVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKA 416 (985)
Q Consensus 345 ---~~~GaD-i~v~s~-k~lg~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~a 416 (985)
..++.| ++++|. |.|+.| |-.+|++++ ++++++.+-..+ ....+ .
T Consensus 226 ~~~~~~~~~~i~~~s~sK~~~~~----G~riG~~~~~~~~~~~~~~l~~~~---------------------~~~~~--~ 278 (394)
T 2ay1_A 226 RLIASRIPEVLIAASCSKNFGIY----RERTGCLLALCADAATRELAQGAM---------------------AFLNR--Q 278 (394)
T ss_dssp HHHHHHCSSEEEEEECTTTTTCG----GGCEEEEEEECSSHHHHHHHHHHH---------------------HHHHH--T
T ss_pred HHHhhcCCCEEEEEeccCCCcCc----CCccceEEEEeCCHHHHHHHHHHH---------------------HHHHh--h
Confidence 122433 567776 766422 234699988 665543321000 00001 1
Q ss_pred CCCccchhHHHHHHHHHHHHHh-----CcchHHHHHHHHHHHHHHHHHHHhcCC---CeEEcCCCCcceEE-EecCCHHH
Q 001989 417 TSNICTAQALLANMAAMYAVYH-----GPEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQGLPFFDTVK-VKCADAHA 487 (985)
Q Consensus 417 tsni~t~~~l~a~~aa~~l~~~-----g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~~~~~-~~~~~~~~ 487 (985)
+...++.....+..+++ ... -.+.++++.++..++.+++.+.|+++| ++++..+ ...-+. +..+ ...
T Consensus 279 ~~~~~~~~~~~a~~~~l--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~g~~~~~~~~-~~~ 354 (394)
T 2ay1_A 279 TYSFPPFHGAKIVSTVL--TTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAE-HRGMFSRLGAT-PEQ 354 (394)
T ss_dssp TTSSCCCHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHH-CCSSEEECCCC-HHH
T ss_pred hcCCCChHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcC-CceEEEeeCCC-HHH
Confidence 11111112222222222 111 124678888888999999999998764 2443311 111122 2222 556
Q ss_pred HHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 488 IASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 488 v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+.|.++||.+.. .+|++++ .+|++|+++++++|.+
T Consensus 355 ~~~~l~~~gi~v~~----~~Ris~~-~~~~~~i~~~~~~l~~ 391 (394)
T 2ay1_A 355 VKRIKEEFGIYMVG----DSRINIA-GLNDNTIPILARAIIE 391 (394)
T ss_dssp HHHHHHHHCEECCT----TCEEEGG-GCCTTTHHHHHHHHHH
T ss_pred HHHHHHhCCEEecC----CCeEEee-cCCHhhHHHHHHHHHH
Confidence 77777788998864 3799988 5799999999999863
No 435
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.31 E-value=9.4e-11 Score=135.89 Aligned_cols=278 Identities=13% Similarity=0.130 Sum_probs=166.0
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHh-hhhcCCCCEEEEcC-CCChhHHHHHHHh---------hcCCCe
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCN-NIQKGKKKTFIIAS-NCHPQTIDICITR---------ADGFDI 281 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~-~~~~~~g~~Vlv~~-~~H~s~~~~~~~~---------a~~~gi 281 (985)
..++.+.+++++|.+..++.+++||+.++++++.+. ... ++++||+.+ ..|+.....+... ....|+
T Consensus 87 ~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~ 164 (433)
T 1zod_A 87 VVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVT--GKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGS 164 (433)
T ss_dssp HHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHH--TCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTE
T ss_pred HHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhh--CCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCc
Confidence 345667899999887778999999998888776533 223 467888766 5666655544210 001255
Q ss_pred EEEEeC------------------chhhhc-cC----CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEe
Q 001989 282 KVVVSD------------------LKDIDY-KS----GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMAT 333 (985)
Q Consensus 282 ~v~~v~------------------~~~l~~-l~----~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a 333 (985)
..+.++ +++|++ ++ +++++|++... |.+|.+.+ +++|.++|+++|+++++|
T Consensus 165 ~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D- 243 (433)
T 1zod_A 165 FAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILD- 243 (433)
T ss_dssp EEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEE-
T ss_pred eEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEe-
Confidence 544332 345555 54 56777776432 56897765 999999999999999995
Q ss_pred cCcc-ccCCCCCC-----cccceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccc
Q 001989 334 DLLA-LTILKPPG-----ELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTR 407 (985)
Q Consensus 334 ~~~~-lg~l~~~~-----~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tr 407 (985)
+..+ +|...... ....|++.. +|+|++ |-.+|++++++++++.+.. +. +
T Consensus 244 Ev~~~~g~~g~~~~~~~~~~~~di~s~-sK~~~~-----G~~ig~~~~~~~~~~~~~~----------~~--~------- 298 (433)
T 1zod_A 244 EAQTGVGRTGTMFACQRDGVTPDILTL-SKTLGA-----GLPLAAIVTSAAIEERAHE----------LG--Y------- 298 (433)
T ss_dssp CTTTTTTTTSSSSTHHHHTCCCSEEEE-CHHHHT-----TSSCEEEEECHHHHHHHHH----------TT--C-------
T ss_pred ccccCCCcCchHhHHhhcCCCCCEEEe-cccccC-----CCCeeEEEEhHHHHHhhcc----------CC--C-------
Confidence 3443 44222111 123576533 388863 2346899999888765511 00 0
Q ss_pred cccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEc-CCCCcceEEEec
Q 001989 408 EQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQ-GLPFFDTVKVKC 482 (985)
Q Consensus 408 e~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~-~~~~~~~~~~~~ 482 (985)
...+|.+. ++.+..+..+++ ..+..++ +.++..++.++++++|+++ +.+... ....+-.+.+..
T Consensus 299 -----~~~~t~~~-~~~~~~a~~aal--~~~~~~~---~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~i~~~~ 367 (433)
T 1zod_A 299 -----LFYTTHVS-DPLPAAVGLRVL--DVVQRDG---LVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVK 367 (433)
T ss_dssp -----CCCCTTTT-CHHHHHHHHHHH--HHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEE
T ss_pred -----CCCCCCCc-CHHHHHHHHHHH--HHHHhCC---HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEec
Confidence 00022211 111222222332 3322223 4566677788888887764 312222 111121222221
Q ss_pred --------CC-HHHHHHHHHHcCceeeeec--C--CeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 483 --------AD-AHAIASAAYKIEMNLRVVD--S--NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 --------~~-~~~v~~~L~~~GI~~~~~~--~--~~lris~t~~~t~edId~li~aL~~ 529 (985)
.. +.++.+.|.++||.+.... . +.+|++++..+|++||++++++|..
T Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~ 427 (433)
T 1zod_A 368 DRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQ 427 (433)
T ss_dssp ETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CccccCCChHHHHHHHHHHHHCCCeEeccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHH
Confidence 12 6789999999999886542 3 7899999999999999999999874
No 436
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.31 E-value=1.1e-10 Score=136.19 Aligned_cols=275 Identities=12% Similarity=0.049 Sum_probs=159.5
Q ss_pred HHHHHHHHHHhc-CCC-----Ccceee--ccchHHHHHHHH--HHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeE
Q 001989 213 LLNFQTMIADLT-GLP-----MSNASL--LDEGTAAAEAMA--MCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIK 282 (985)
Q Consensus 213 i~e~q~~ia~L~-g~~-----~~~~sl--~~~~ta~~ea~~--~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~ 282 (985)
+.++++.+++++ |.+ +.++.+ +.|||.+.+.+. ++. .. +||+|++++..|+.+...++.+++..|.+
T Consensus 96 ~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~-~~--~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~ 172 (448)
T 3meb_A 96 FPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHL-WM--PKAEFYMPSTTWPNHYGIYDKVFNKLKVP 172 (448)
T ss_dssp CHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHH-HC--TTCCEEEESSCCTHHHHHHHHHHCTTTSC
T ss_pred hHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHH-hC--CCCEEEECCCCCHhHHHHHHhhHHhCCCe
Confidence 345777888887 877 567888 899998776532 222 23 78999999999999988876333346777
Q ss_pred EEEeCc-----------hhhhc-cC---CCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCCC-
Q 001989 283 VVVSDL-----------KDIDY-KS---GDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILK- 342 (985)
Q Consensus 283 v~~v~~-----------~~l~~-l~---~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l~- 342 (985)
++.++. +++++ +. ++++++++.+| |.+|.+.+ +++|+++|+++|+++++|.-...++.-.
T Consensus 173 v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~ 252 (448)
T 3meb_A 173 YKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSF 252 (448)
T ss_dssp CEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCH
T ss_pred EEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCc
Confidence 776654 23333 43 45777777787 78998865 6669999999999999953212222111
Q ss_pred --CC---C---cccce-EEEecC-ccccccCCCCCCcEEEE--EE--------c-h----hhHhcCCCceeeeeecCCCC
Q 001989 343 --PP---G---ELGAD-IVVGSA-QRFGVPMGYGGPHAAFL--AT--------S-Q----EYKRMMPGRIVGVSIDSSGK 397 (985)
Q Consensus 343 --~~---~---~~GaD-i~v~s~-k~lg~P~~~GGP~~G~l--~~--------~-~----~~~~~lp~~~vG~t~d~~g~ 397 (985)
+. . +.+.+ |+++|. |.|+.| |-.+|++ .+ . + ++.+.+
T Consensus 253 ~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~----G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l-------------- 314 (448)
T 3meb_A 253 EADAFAVRMFVDAGVEVLVAQSFSKNFGLY----GERIGCLHVVHAGVEGSVEKNKALSAAMVSGM-------------- 314 (448)
T ss_dssp HHHTHHHHHHHHTTCCEEEEEECTTTSCCG----GGCCEEEEEECCCCSSSHHHHHHHHHHHHHHH--------------
T ss_pred ccCchhHHHHhhcCCcEEEEecccccCCCc----cccceeeeeeeccccccccCCHHHHHHHHHHH--------------
Confidence 00 0 12344 557776 766532 2236776 44 3 3 222221
Q ss_pred cceeeecccccccccccccCCCccchhHHHHHHHHHHHHHh-----CcchHHHHHHHHHHHHHHHHHHHhcCCCeEE---
Q 001989 398 PALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYH-----GPEGLKTIAQRVHGLAGTFALGLKKLGTVEV--- 469 (985)
Q Consensus 398 ~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~-----g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~--- 469 (985)
....| ..+++.+ .+...+++..+... -.+.++++.++..++.+++.+.|+++| +.-
T Consensus 315 -----------~~~~~-~~~~~~~---~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~~~ 378 (448)
T 3meb_A 315 -----------TLQIR-KTWSMSA---IHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRK-TPGPGS 378 (448)
T ss_dssp -----------HHHHH-TTTSSCC---HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCSTT
T ss_pred -----------HHHHh-cccCCcc---HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCcCc
Confidence 00011 1223321 11111111111100 013467888888999999999999885 321
Q ss_pred ---cC--CCCcceEEEecCCHHHHHHHH-HHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 470 ---QG--LPFFDTVKVKCADAHAIASAA-YKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 470 ---~~--~~~~~~~~~~~~~~~~v~~~L-~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+. .+...-+.+. .-..++...| .++||.+.. +..|+|+... ++++|++++++|.+
T Consensus 379 ~~~~~~~~~~~g~~~~~-~~~~~~~~~ll~~~gV~v~~---G~gRis~a~~-~~~~i~~~~~~l~~ 439 (448)
T 3meb_A 379 KGTWDHILTAIGMFTFT-GLTPEHVDYLKEKWSIYLVK---AGGRMSMCGL-TESNCDYVAEAIHD 439 (448)
T ss_dssp TCCCTHHHHCCSSEEEC-CCCHHHHHHHHHHHCEEECS---GGGEEEGGGC-CTTTHHHHHHHHHH
T ss_pred ccccceeCCCceEEEec-CCCHHHHHHHHHhCCEEEeC---CCcEEEEecC-CHHHHHHHHHHHHH
Confidence 11 0111113331 1123445555 567998864 2249998644 45569999998874
No 437
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.31 E-value=5.9e-11 Score=139.65 Aligned_cols=285 Identities=14% Similarity=0.133 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHH-hhh--hc--CCCCEEEEcC-CCChhHHHHHHHhhc--------
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMC-NNI--QK--GKKKTFIIAS-NCHPQTIDICITRAD-------- 277 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a-~~~--~~--~~g~~Vlv~~-~~H~s~~~~~~~~a~-------- 277 (985)
...++.++++++++.+...+.+++||+.++++++.+ +.+ .+ .++++||+.+ .-|......+..-..
T Consensus 98 ~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~ 177 (476)
T 3i5t_A 98 PAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFD 177 (476)
T ss_dssp HHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSC
T ss_pred HHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccC
Confidence 344567889999976666788999999998887753 332 01 1467777655 566665554421000
Q ss_pred --CCCeEEEEeC-----------------chhhhc-cC----CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcE
Q 001989 278 --GFDIKVVVSD-----------------LKDIDY-KS----GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVK 328 (985)
Q Consensus 278 --~~gi~v~~v~-----------------~~~l~~-l~----~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~gal 328 (985)
..++.....+ .++|++ +. +++++|++..+ +..|.+.+ +++|.++|+++|++
T Consensus 178 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gil 257 (476)
T 3i5t_A 178 IAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDIL 257 (476)
T ss_dssp CCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCE
T ss_pred CCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 1133333222 346665 43 56788877765 56777655 99999999999999
Q ss_pred EEEEecCcc-ccCCCCC---C-ccc--ceEEEecCccccccCCCCC-CcEEEEEEchhhHhcCCCceeeeeecCCCCcce
Q 001989 329 VVMATDLLA-LTILKPP---G-ELG--ADIVVGSAQRFGVPMGYGG-PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPAL 400 (985)
Q Consensus 329 liV~a~~~~-lg~l~~~---~-~~G--aDi~v~s~k~lg~P~~~GG-P~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~ 400 (985)
+|+| +.++ +|-.... . .+| .|+++. +|.|+ || -.+|++.+++++++.+...- ...+.|
T Consensus 258 lI~D-Ev~~g~gr~G~~~~~~~~~~v~pdi~t~-sK~l~-----~G~~plg~v~~~~~i~~~~~~~~-------~~~~~~ 323 (476)
T 3i5t_A 258 YISD-EVVTGFGRCGEWFASEKVFGVVPDIITF-AKGVT-----SGYVPLGGLAISEAVLARISGEN-------AKGSWF 323 (476)
T ss_dssp EEEE-CTTTTTTTTSSSCHHHHTTCCCCSEEEE-CGGGG-----TTSSCCEEEEECHHHHHTTSGGG-------CTTCEE
T ss_pred EEEE-ecccCCccccCceeeecccCCCcchhhh-hhhhc-----CCCcCeEEEEECHHHHHHHhcCC-------cccccc
Confidence 9995 3332 4322211 1 233 477654 48875 23 34678888999888763210 000000
Q ss_pred eeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC---CeEEc-CCCCcc
Q 001989 401 RVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQ-GLPFFD 476 (985)
Q Consensus 401 ~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~-~~~~~~ 476 (985)
. ...|.+. .+.+..+..++ +..+.. +++.++..++.+++++.|++++ .+..+ ....+-
T Consensus 324 ~------------~~~t~~~-np~a~aAa~aa--L~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~~~ 385 (476)
T 3i5t_A 324 T------------NGYTYSN-QPVACAAALAN--IELMER---EGIVDQAREMADYFAAALASLRDLPGVAETRSVGLVG 385 (476)
T ss_dssp C------------CCCTTTT-CHHHHHHHHHH--HHHHHH---TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEE
T ss_pred c------------ccCCCCc-CHHHHHHHHHH--HHHHHh---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCcee
Confidence 0 0112111 11112222222 233322 3466777788888888888653 12221 111111
Q ss_pred eEEEecC------------CHHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 477 TVKVKCA------------DAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 477 ~~~~~~~------------~~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.+... .+.++.+.|.++||.+... ++.+|+++....|++|||+++++|.+
T Consensus 386 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-g~~iRi~p~l~~t~e~i~~~l~~l~~ 449 (476)
T 3i5t_A 386 CVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPL-GDLCVISPPLIISRAQIDEMVAIMRQ 449 (476)
T ss_dssp EEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEE-TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEecCccccccccchhHHHHHHHHHHHHCCCEEEec-CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1222211 0457888899999998764 38999999999999999999999985
No 438
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.31 E-value=1.4e-10 Score=133.98 Aligned_cols=267 Identities=15% Similarity=0.114 Sum_probs=164.5
Q ss_pred HHHHHHHHHhcCCC-CcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcC-CCChhHHHHHHH------hhcCC---CeE
Q 001989 214 LNFQTMIADLTGLP-MSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIAS-NCHPQTIDICIT------RADGF---DIK 282 (985)
Q Consensus 214 ~e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~-~~H~s~~~~~~~------~a~~~---gi~ 282 (985)
.++.+.+++++|.+ +.++.+++||+.+++.++.+.+.. .|++||+.+ ..|+.+...+.. +.... ...
T Consensus 89 ~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~--~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (419)
T 2eo5_A 89 LELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNT--GRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPG 166 (419)
T ss_dssp HHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTT--SCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTT
T ss_pred HHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHh--hCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCC
Confidence 45667899999987 678989999998887766543221 378888877 566666555432 10111 112
Q ss_pred EEEeC------------------------chhhh-c-cC-----CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCC
Q 001989 283 VVVSD------------------------LKDID-Y-KS-----GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANG 326 (985)
Q Consensus 283 v~~v~------------------------~~~l~-~-l~-----~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~g 326 (985)
++.++ +++|+ + ++ +++++|++... |.+|.+.+ +++|.++|+++|
T Consensus 167 ~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~ 246 (419)
T 2eo5_A 167 VIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYG 246 (419)
T ss_dssp EEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHT
T ss_pred CEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 33332 23676 6 54 46776666433 45898766 999999999999
Q ss_pred cEEEEEecCcc-ccCCCCC---C--cccceEEEecCccccccCCCCC-CcEEEEEEchhhHhcCCCceeeeeecCCCCcc
Q 001989 327 VKVVMATDLLA-LTILKPP---G--ELGADIVVGSAQRFGVPMGYGG-PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPA 399 (985)
Q Consensus 327 alliV~a~~~~-lg~l~~~---~--~~GaDi~v~s~k~lg~P~~~GG-P~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~ 399 (985)
+++++| +..+ +|..... . ....|+++. +|+|++ | -.+|+++++++++ .+ ....
T Consensus 247 ~~li~D-E~~~~~g~~g~~~~~~~~~~~~d~~t~-sK~~~~-----G~~riG~~~~~~~~~-~~-~~~~----------- 306 (419)
T 2eo5_A 247 ILLVDD-EVQMGLGRTGKLFAIENFNTVPDVITL-AKALGG-----GIMPIGATIFRKDLD-FK-PGMH----------- 306 (419)
T ss_dssp CEEEEE-CTTTTTTTTSSSSGGGGGTCCCSEEEE-CGGGGT-----TTSCCEEEEEEGGGC-CC----------------
T ss_pred CEEEEe-ccccCCccCcchhhHHhcCCCCCEEEe-cccccC-----CccceEEEEEchHhh-cC-Cccc-----------
Confidence 999995 3333 4322111 1 224576643 387752 3 3468888888765 54 1000
Q ss_pred eeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcceEE
Q 001989 400 LRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVK 479 (985)
Q Consensus 400 ~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~ 479 (985)
.+|.+.. +.+..+..+++ ..+ +++.++..++.+++.+.|+++. ..+. +...-+.
T Consensus 307 ---------------~~t~~~n-~~~~~aa~aal--~~~-----~~~~~~~~~~~~~l~~~L~~~~-~~~~--~~g~~~~ 360 (419)
T 2eo5_A 307 ---------------SNTFGGN-ALACAIGSKVI--DIV-----KDLLPHVNEIGKIFAEELQGLA-DDVR--GIGLAWG 360 (419)
T ss_dssp -----------------CCCCC-HHHHHHHHHHH--HHH-----HHHHHHHHHHHHHHHHHHTTSS-SEEE--EETTEEE
T ss_pred ---------------CCCCCCC-HHHHHHHHHHH--HHH-----HHHHHHHHHHHHHHHHHHHHhh-hheE--eeeEEEE
Confidence 1121111 11222222332 221 2367788889999999998851 1111 1112234
Q ss_pred Eec-C--C-HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 480 VKC-A--D-AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 480 ~~~-~--~-~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+ + . +. +.+.|.++||.+.....+.+|++++..+|++|+++++++|.+
T Consensus 361 i~~~~~~~~~~-~~~~l~~~Gv~v~~~~~~~lRis~~~~~t~e~i~~~l~~l~~ 413 (419)
T 2eo5_A 361 LEYNEKKVRDR-IIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQGLDILKK 413 (419)
T ss_dssp EECSCHHHHHH-HHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEecCccHHH-HHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 555 3 2 55 889999999998765568899999999999999999999974
No 439
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.29 E-value=5.5e-10 Score=130.53 Aligned_cols=275 Identities=13% Similarity=0.121 Sum_probs=157.6
Q ss_pred HHHHHHHHHHhcCCC-CcceeeccchHHHHHHHH-HHhhhhcCCCCEEEEcC-CCChhHHHHHHHhh------cCC----
Q 001989 213 LLNFQTMIADLTGLP-MSNASLLDEGTAAAEAMA-MCNNIQKGKKKTFIIAS-NCHPQTIDICITRA------DGF---- 279 (985)
Q Consensus 213 i~e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~-~a~~~~~~~g~~Vlv~~-~~H~s~~~~~~~~a------~~~---- 279 (985)
..++.+.++++++.+ ...+.+++|||.++++++ +++... ++++||+.+ ..|......+..-. ..+
T Consensus 109 ~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~--g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~ 186 (453)
T 4ffc_A 109 YVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLAT--GRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFA 186 (453)
T ss_dssp HHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH--CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCC
T ss_pred HHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhc--CCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCC
Confidence 345678899999754 357888999999888877 444333 567787666 45555444432100 001
Q ss_pred -CeEEEEeCc------------------hhhhc-cCCC-EeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEe
Q 001989 280 -DIKVVVSDL------------------KDIDY-KSGD-VCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMAT 333 (985)
Q Consensus 280 -gi~v~~v~~------------------~~l~~-l~~~-t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a 333 (985)
++....++. ++|++ ++++ +++|++... +..|.+.+ +++|.++|+++|+++|+|
T Consensus 187 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~D- 265 (453)
T 4ffc_A 187 PEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIAD- 265 (453)
T ss_dssp SSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEE-
T ss_pred CCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEe-
Confidence 333332321 22444 4544 455554433 34577765 999999999999999995
Q ss_pred cCcc-ccCCCCC---Cccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccc
Q 001989 334 DLLA-LTILKPP---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTR 407 (985)
Q Consensus 334 ~~~~-lg~l~~~---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tr 407 (985)
+..+ +|..... ..+| .|+++. +|.|++ |-.+|++.+++++++.+....
T Consensus 266 Ev~~g~g~~g~~~a~~~~~~~pdi~t~-sK~~~~-----G~~~G~~~~~~~i~~~~~~~~-------------------- 319 (453)
T 4ffc_A 266 EVQTGFARTGAWFASEHEGIVPDIVTM-AKGIAG-----GMPLSAVTGRAELMDAVYAGG-------------------- 319 (453)
T ss_dssp CTTTTTTTTSSSSTHHHHTCCCSEEEE-CGGGGT-----TSSCEEEEEEHHHHTTSCTTS--------------------
T ss_pred cCccCCCcccccchhhhcCCCcchHhh-hhhhcC-----CcCeEEEEECHHHHhhhcccC--------------------
Confidence 3332 4322111 1123 466654 388853 234678888998887662110
Q ss_pred cccccccccCCCccchhHHHHHHHHH-HHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEc-CCCCcceEEEe
Q 001989 408 EQHIRRDKATSNICTAQALLANMAAM-YAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQ-GLPFFDTVKVK 481 (985)
Q Consensus 408 e~~irre~atsni~t~~~l~a~~aa~-~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~-~~~~~~~~~~~ 481 (985)
...|.+ .+. + +..|++ .+..+..+ ++.++..++.+++++.|+++ +.+..+ +...+-.+.+.
T Consensus 320 ------~~~t~~--~~~-~-~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~ 386 (453)
T 4ffc_A 320 ------LGGTYG--GNP-V-TCAAAVAALGVMREL---DLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIV 386 (453)
T ss_dssp ------SCCSSS--SCH-H-HHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEB
T ss_pred ------cCCCCC--cCH-H-HHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEe
Confidence 011111 111 1 122222 12333222 34555556666666666543 323322 11112123232
Q ss_pred c-----CC---HHHHHHHHHHcCceeeeec--CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 482 C-----AD---AHAIASAAYKIEMNLRVVD--SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 482 ~-----~~---~~~v~~~L~~~GI~~~~~~--~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. +. +.++.+.|.++||.+.... ++.+|++++..+|++|||+++++|.+
T Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~ 444 (453)
T 4ffc_A 387 KPGTLEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSD 444 (453)
T ss_dssp CTTSCCBCHHHHHHHHHHHHHTTEECCEECTTSCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred cCcccCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1 22 6788899999999886543 47899999999999999999999974
No 440
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.29 E-value=1e-10 Score=134.51 Aligned_cols=274 Identities=12% Similarity=0.043 Sum_probs=155.2
Q ss_pred HHHHHHHHhc-CCC-----Cccee--eccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001989 215 NFQTMIADLT-GLP-----MSNAS--LLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 215 e~q~~ia~L~-g~~-----~~~~s--l~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v 286 (985)
++++.+|+++ |.+ +.++. .+.+++++.+++...++...++||+|+++...|+++...++. .|.+++.+
T Consensus 83 ~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~~ 158 (409)
T 4eu1_A 83 SFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAK----AGMELTPY 158 (409)
T ss_dssp HHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHH----TTCEEEEE
T ss_pred HHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHH----cCCeEEEE
Confidence 4667777765 665 44553 377888877766544332224789999999999999888754 57788877
Q ss_pred Cc----------hhhhc-c---CCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCCC------
Q 001989 287 DL----------KDIDY-K---SGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILK------ 342 (985)
Q Consensus 287 ~~----------~~l~~-l---~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l~------ 342 (985)
+. +++++ + .++++++++.+| |.+|.+.+ +++|+++|+++|+++++|.-...++.-.
T Consensus 159 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~ 238 (409)
T 4eu1_A 159 SYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAF 238 (409)
T ss_dssp CCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTH
T ss_pred EeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchH
Confidence 64 34555 4 235566666788 78998876 5669999999999999953112222111
Q ss_pred CCC---cccc-eEEEecC-ccccccCCCCCCcEEEE--EE-chhhHhcCCCceeeeeecCCCCcceeeeccccccccccc
Q 001989 343 PPG---ELGA-DIVVGSA-QRFGVPMGYGGPHAAFL--AT-SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRD 414 (985)
Q Consensus 343 ~~~---~~Ga-Di~v~s~-k~lg~P~~~GGP~~G~l--~~-~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre 414 (985)
... +.+. .|+++|. |.|+.| |-.+|++ .+ ++++.+.+-..+ ....+
T Consensus 239 ~~~~~~~~~~~~i~~~S~SK~~g~~----G~riG~~~~v~~~~~~~~~l~~~~---------------------~~~~~- 292 (409)
T 4eu1_A 239 VPRHLVDMVPNLIVAQSFSKNFGLY----GHRCGALHISTASAEEAKRLVSQL---------------------ALLIR- 292 (409)
T ss_dssp HHHHHHTTSSCCEEEEECTTTSSCG----GGCCEEEEEECSSHHHHHHHHHHH---------------------HHHHH-
T ss_pred HHHHHHhhCCcEEEEecCcccccCc----cCCceEEEEEeCCHHHHHHHHHHH---------------------HHHHh-
Confidence 000 1122 3567776 877543 1235785 44 445322220000 00001
Q ss_pred ccCCCccchhHHHHHHHHHHHHHhC-----cchHHHHHHHHHHHHHHHHHHHhcCCC---eEEcCCCCcceEEEecCCHH
Q 001989 415 KATSNICTAQALLANMAAMYAVYHG-----PEGLKTIAQRVHGLAGTFALGLKKLGT---VEVQGLPFFDTVKVKCADAH 486 (985)
Q Consensus 415 ~atsni~t~~~l~a~~aa~~l~~~g-----~~Gl~~i~~~~~~~a~~l~~~L~~~g~---~~~~~~~~~~~~~~~~~~~~ 486 (985)
..+++. ..+...+++..+.... .+.++++.++..++.+++.+.|+++|. +++.. +...-+.+ ..-..
T Consensus 293 ~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~-~~~~~ 367 (409)
T 4eu1_A 293 PMYNNP---PLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIE-RQVGMMAY-TGLTR 367 (409)
T ss_dssp HHHSSC---CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHH-HSCSSEEE-CCCCH
T ss_pred hhcCCC---ChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceec-CCceEEEE-eCCCH
Confidence 011111 1121111111112100 234677888889999999999998851 23221 11111332 22123
Q ss_pred HHHHHHH-HcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 487 AIASAAY-KIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 487 ~v~~~L~-~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
++.++|. ++||.+.. + .|+++... +++||++++++|.
T Consensus 368 ~~~~~ll~~~gv~v~p---~-~Ri~~~~~-~~~~i~~~~~~l~ 405 (409)
T 4eu1_A 368 EQVELLRSEYHIYMTL---N-GRAAVSGL-NSTNVEYVSQAIH 405 (409)
T ss_dssp HHHHHHHHHHCEECCT---T-CEEEGGGC-CTTTHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEcC---C-CEEEEEec-CHhhHHHHHHHHH
Confidence 4445554 67998864 2 48888754 4566999999986
No 441
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.29 E-value=1.9e-10 Score=137.24 Aligned_cols=283 Identities=11% Similarity=0.007 Sum_probs=163.3
Q ss_pred cceeeccchHHHHHHHHHHhhh--hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc------------hhhhc-
Q 001989 229 SNASLLDEGTAAAEAMAMCNNI--QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL------------KDIDY- 293 (985)
Q Consensus 229 ~~~sl~~~~ta~~ea~~~a~~~--~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~------------~~l~~- 293 (985)
.++.++.|+|+++..++.++.. ..++||+|+++...|+++...++ ..|.+++.+++ ++|++
T Consensus 165 ~~i~~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~----~~g~~~~~v~~~~~~~~~~~~d~~~l~~~ 240 (533)
T 3f6t_A 165 TDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPE----LKDYELVEVDLHSYEKNDWEIEPNEIEKL 240 (533)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGG----GGGSEEEEECCCEETTTTSEECHHHHHHH
T ss_pred ceEEEECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHH----HcCCeEEEEEecCCcccCCCCCHHHHHHH
Confidence 4788889999887776654210 12488999999999999887754 24556655543 35666
Q ss_pred cCCCEeEEEEEcC-CCCeeeccHH---HHHHHHH-hCCcEEEEEecCccccCCCCC----CcccceEEEecC-ccccccC
Q 001989 294 KSGDVCGVLVQYP-GTEGEVLDYG---DFIKNAH-ANGVKVVMATDLLALTILKPP----GELGADIVVGSA-QRFGVPM 363 (985)
Q Consensus 294 l~~~t~~V~v~~p-n~~G~v~di~---~I~~~a~-~~galliV~a~~~~lg~l~~~----~~~GaDi~v~s~-k~lg~P~ 363 (985)
+++++++|++++| |++|.+.+.+ +|+++|+ ++|+++++|. ..+......+ ...+.+++++|. |.||.
T Consensus 241 l~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De-~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~-- 317 (533)
T 3f6t_A 241 KDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDE-VYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGC-- 317 (533)
T ss_dssp SCTTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEEC-TTGGGSTTCCCHHHHSGGGEEEEEESHHHHTC--
T ss_pred hCCCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcC-CccccccCccCHhhcCCCCEEEEecCcccCCC--
Confidence 7889999999998 7799987655 8888888 6899999953 3321111111 112456999997 87753
Q ss_pred CCCCCc--EEEEEEchh-----hHhcCCCceeee-ee---cCCCCcceeeecccc-cccccccccCCCccchhHHHHHHH
Q 001989 364 GYGGPH--AAFLATSQE-----YKRMMPGRIVGV-SI---DSSGKPALRVAMQTR-EQHIRRDKATSNICTAQALLANMA 431 (985)
Q Consensus 364 ~~GGP~--~G~l~~~~~-----~~~~lp~~~vG~-t~---d~~g~~~~~l~l~tr-e~~irre~atsni~t~~~l~a~~a 431 (985)
|| +|+++++++ +++.+++..... .. .....+ ..+.+-.| -...++.+.....+++.+....++
T Consensus 318 ----~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p-~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a 392 (533)
T 3f6t_A 318 ----TGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDP-DKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEA 392 (533)
T ss_dssp ----GGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCG-GGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHH
T ss_pred ----cccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCc-chhhhHHHHHHHHHHHHHhcccCCChHHHHHHH
Confidence 44 799999877 666664311000 00 000000 00000000 000011111111111111111111
Q ss_pred --HHHHHHh-------CcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC--CCcceEEEecC-----------------
Q 001989 432 --AMYAVYH-------GPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL--PFFDTVKVKCA----------------- 483 (985)
Q Consensus 432 --a~~l~~~-------g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~~~~~~~~~----------------- 483 (985)
++. .+. ..+-++++.++..++.+++.+.|. +| +....+ ..+ +.++++
T Consensus 393 ~~a~~-~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~~-~~~~~~~~g~~--~~~~l~~~~~~~~g~~~~~~~~~ 467 (533)
T 3f6t_A 393 LFSMT-HLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-AP-KDETDTNTHYY--SLIDIYRLAEKIYGKEFRDYLTN 467 (533)
T ss_dssp HHHHH-HHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-CC-CCCSTTBCCSE--EEEEHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHH-HHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-CC-ccccCCCceEE--EEEehHhhhhhccchHHHHHhhc
Confidence 111 121 234567888888899999999997 76 654321 122 112221
Q ss_pred --CHHHHHHHHH-HcCceeeee-----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 484 --DAHAIASAAY-KIEMNLRVV-----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 484 --~~~~v~~~L~-~~GI~~~~~-----~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
...++..+|. ++||.+... ..+.+|+|+.. .+++||+++++.|.+
T Consensus 468 ~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a~-~~~e~i~~~i~~L~~ 520 (533)
T 3f6t_A 468 NFEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQAN-LPTEDYALIGKQVLE 520 (533)
T ss_dssp HCCHHHHHHHHHHHTTSSSCTTEEECSSTTEEEEESSS-SCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEee-CCHHHHHHHHHHHHH
Confidence 2345555554 679987431 25789999854 578999999999874
No 442
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.27 E-value=2.8e-10 Score=131.74 Aligned_cols=282 Identities=14% Similarity=0.114 Sum_probs=152.9
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-h--hc--CCCCEEEEcCCCChhHHHHHHHhhcCCC-------
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-I--QK--GKKKTFIIASNCHPQTIDICITRADGFD------- 280 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~--~~--~~g~~Vlv~~~~H~s~~~~~~~~a~~~g------- 280 (985)
..++.++++++++.+..++.+++||+.++++++.+.. . .+ .++++||+.+..|+..............
T Consensus 74 ~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 153 (430)
T 3i4j_A 74 LEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTP 153 (430)
T ss_dssp HHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-----------------------
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCC
Confidence 3456678999998877789999999988888775432 2 01 2477888877655443322211110000
Q ss_pred --e--EEEEeCc-----------hhhhc-cC----CCEeEEEEEcC-C-CCeeecc----HHHHHHHHHhCCcEEEEEec
Q 001989 281 --I--KVVVSDL-----------KDIDY-KS----GDVCGVLVQYP-G-TEGEVLD----YGDFIKNAHANGVKVVMATD 334 (985)
Q Consensus 281 --i--~v~~v~~-----------~~l~~-l~----~~t~~V~v~~p-n-~~G~v~d----i~~I~~~a~~~galliV~a~ 334 (985)
. .+..++. ++|++ +. +++++|++..+ + ..|.+.+ +++|.++|+++|+++++| +
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D-E 232 (430)
T 3i4j_A 154 LMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIAD-E 232 (430)
T ss_dssp --CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEE-C
T ss_pred cCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEe-c
Confidence 0 2222332 55665 53 45666666543 4 6777766 999999999999999995 3
Q ss_pred Ccc-ccCCCCC---Ccc-c--ceEEEecCccccccCCCCC-CcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccc
Q 001989 335 LLA-LTILKPP---GEL-G--ADIVVGSAQRFGVPMGYGG-PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQT 406 (985)
Q Consensus 335 ~~~-lg~l~~~---~~~-G--aDi~v~s~k~lg~P~~~GG-P~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~t 406 (985)
..+ ++..... ..+ | .|+++. +|.|++ | =-+|++.+++++++.+... .+.+
T Consensus 233 v~~~~~~~g~~~~~~~~~~~~~di~t~-sK~l~~-----G~~r~G~~~~~~~i~~~~~~~----------~~~~------ 290 (430)
T 3i4j_A 233 VMSGMGRCGSPLALSRWSGVTPDIAVL-GKGLAA-----GYAPLAGLLAAPQVYETVMGG----------SGAF------ 290 (430)
T ss_dssp TTTTTTTTSSSSGGGGTTTCCCSEEEE-CGGGTT-----TSSCCEEEEECHHHHHHHHHT----------TCBC------
T ss_pred hhhCCCcccchhhhhhhcCCCCcEEEE-cccccC-----CccccEEEEECHHHHHHHhcc----------CCcc------
Confidence 322 3321111 122 3 566654 388752 2 2357888898887765210 0000
Q ss_pred ccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc----CCCeEEcC-CCCcceEEEe
Q 001989 407 REQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK----LGTVEVQG-LPFFDTVKVK 481 (985)
Q Consensus 407 re~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~----~g~~~~~~-~~~~~~~~~~ 481 (985)
....|.+. ++.+..+..++ +..+.. +++.++..++.+++++.|++ ++++..+. ...+-.+.+.
T Consensus 291 ------~~~~t~~~-~~~~~aaa~aa--l~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~ 358 (430)
T 3i4j_A 291 ------MHGFTYAG-HPVSVAAGLSV--LDIVER---EDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLG 358 (430)
T ss_dssp ------CCCCTTTT-CHHHHHHHHHH--HHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC
T ss_pred ------cccCCCCC-CHHHHHHHHHH--HHHHHc---ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEec
Confidence 00111111 11112222222 233222 23445555566666666554 32243331 1112122221
Q ss_pred c---------CC-HHHHHHHHHHcCceeeee-------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 482 C---------AD-AHAIASAAYKIEMNLRVV-------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 482 ~---------~~-~~~v~~~L~~~GI~~~~~-------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. +. +.++.+.|.++||.+... .++.+|++++...|+||+++++++|++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~ 423 (430)
T 3i4j_A 359 DLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAG 423 (430)
T ss_dssp ------------CHHHHHHHHHHTTEECC-----------CEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred cccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1 11 478999999999987653 257899999999999999999999974
No 443
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.27 E-value=2.2e-10 Score=131.23 Aligned_cols=272 Identities=11% Similarity=0.075 Sum_probs=168.1
Q ss_pred HHHHHHHHHhcCC-----CC-cceeeccchHHHHHHHHHHhhhhcCCCC----EEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001989 214 LNFQTMIADLTGL-----PM-SNASLLDEGTAAAEAMAMCNNIQKGKKK----TFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 214 ~e~q~~ia~L~g~-----~~-~~~sl~~~~ta~~ea~~~a~~~~~~~g~----~Vlv~~~~H~s~~~~~~~~a~~~gi~v 283 (985)
.++++.+|++++. ++ .++.++.|++.++..++.++. . +|| +|++++-.|+.+...++ ..|+++
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~-~--~Gd~~~~~Vlv~~P~y~~~~~~~~----~~g~~~ 143 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALS-S--LARSQPVSVVAAAPFYSTYVEETT----YVRSGM 143 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHH-H--TSSSSSEEEEECSSCCTHHHHHHH----TTCBTT
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhc-C--CCCCCcceEEEcCCCchhHHHHHH----HcCCeE
Confidence 4566777777762 23 578899999887776665542 3 788 99999999999888875 346666
Q ss_pred EEeCc--hhhhccCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCC-CCcccceEEEecC-cc
Q 001989 284 VVSDL--KDIDYKSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP-PGELGADIVVGSA-QR 358 (985)
Q Consensus 284 ~~v~~--~~l~~l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~-~~~~GaDi~v~s~-k~ 358 (985)
+.++. ++++ .+++++|++.+| |++|.+.+ +|++.+|++++++++| +....+...+ ....+.+|+++|. |.
T Consensus 144 ~~~~~d~~~l~--~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~D-e~y~~~~~~~l~~~~~~~i~~~S~SK~ 218 (391)
T 3bwn_A 144 YKWEGDAWGFD--KKGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHD-FAYYWPHYTPITRRQDHDIMLFTFSKI 218 (391)
T ss_dssp EEEEEESTTCC--CCSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEE-CTTCSTTTSCCCCCBCCSEEEEEHHHH
T ss_pred EEecCCHHHcC--CCCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEe-CCCCCCCCCccccCCCCeEEEEechhh
Confidence 55544 3333 367899989988 78999875 5666445555988885 3333221111 1245778999997 87
Q ss_pred ccccCCCCCCcEEEEEE-chhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHH--H
Q 001989 359 FGVPMGYGGPHAAFLAT-SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY--A 435 (985)
Q Consensus 359 lg~P~~~GGP~~G~l~~-~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~--l 435 (985)
|+.| |--+|++++ ++++++.+.. .+. ..+.+..+ ....+..+++- .
T Consensus 219 ~g~~----GlRiG~~~~~~~~l~~~l~~-------------------------~~~-~~~~~~~~-~~q~a~~~~l~~~~ 267 (391)
T 3bwn_A 219 TGHA----GSRIGWALVKDKEVAKKMVE-------------------------YII-VNSIGVSK-ESQVRTAKILNVLK 267 (391)
T ss_dssp HSCG----GGCEEEEEECCHHHHHHHHH-------------------------HHH-HHHSSCCH-HHHHHHHHHHHHHH
T ss_pred cCCC----ccceEEEEecCHHHHHHHHH-------------------------Hhc-ccccCCCH-HHHHHHHHHHhCcc
Confidence 7532 123599988 7777665410 000 00111111 11212222220 0
Q ss_pred HHh-----CcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCC-C-C--c--------c-eEEEecCCHHHHHHHHHHcCc
Q 001989 436 VYH-----GPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-P-F--F--------D-TVKVKCADAHAIASAAYKIEM 497 (985)
Q Consensus 436 ~~~-----g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~-~--~--------~-~~~~~~~~~~~v~~~L~~~GI 497 (985)
.++ ..+.++++.++..++.+++.+.|++++++++... . . | . -+.+++++...+.+.|.++||
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~l~~~gV 347 (391)
T 3bwn_A 268 ETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEETDLVSELRRHKV 347 (391)
T ss_dssp HHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSSCCHHHHHHHTTE
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcHHHHHHHHHHCCE
Confidence 111 1456788889999999999999999844776421 1 0 0 0 123444433456667888999
Q ss_pred eeeee-----cCCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001989 498 NLRVV-----DSNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 498 ~~~~~-----~~~~lris~t~~~t~edId~li~aL~~~ 530 (985)
.+... ..+.+|+|++ +++++|+++++.|.+-
T Consensus 348 ~v~pg~~fg~~~~~iRis~~--~~~e~i~~~~~~L~~~ 383 (391)
T 3bwn_A 348 MSRAGERCGSDKKHVRVSML--SREDVFNVFLERLANM 383 (391)
T ss_dssp ECEEGGGGTCCTTEEEEESC--SCHHHHHHHHHHHHSC
T ss_pred EEccCCCCCCCCCEEEEEec--CCHHHHHHHHHHHHHH
Confidence 87542 1578999998 4899999999999864
No 444
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.26 E-value=3.6e-10 Score=131.86 Aligned_cols=282 Identities=11% Similarity=0.115 Sum_probs=164.5
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-hh-cC---CCCEEEEcCC-CChhHHHHHHHhh--------cC
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQ-KG---KKKTFIIASN-CHPQTIDICITRA--------DG 278 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~-~~---~g~~Vlv~~~-~H~s~~~~~~~~a--------~~ 278 (985)
..++.+.++++++.+.. +.+++|||.++++++.+.+ +. .. ++++||+.+. -|......+..-. ..
T Consensus 93 ~~~la~~l~~~~~~~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 171 (452)
T 3n5m_A 93 AIKLAEKLNEWLGGEYV-IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEP 171 (452)
T ss_dssp HHHHHHHHHHHHTSCEE-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCC
T ss_pred HHHHHHHHHHhCCCCce-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCC
Confidence 34567788999987766 8888999988888775432 20 12 5678887665 4544443332100 00
Q ss_pred CCeEEEEeC--------------------chhhhc-cC----CCEeEEEEEcC--CCCeeecc----HHHHHHHHHhCCc
Q 001989 279 FDIKVVVSD--------------------LKDIDY-KS----GDVCGVLVQYP--GTEGEVLD----YGDFIKNAHANGV 327 (985)
Q Consensus 279 ~gi~v~~v~--------------------~~~l~~-l~----~~t~~V~v~~p--n~~G~v~d----i~~I~~~a~~~ga 327 (985)
....+..++ +++|++ +. +++++|++..+ | +|.+.+ +++|.++|+++|+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~ 250 (452)
T 3n5m_A 172 FASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGA 250 (452)
T ss_dssp CCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTC
T ss_pred CCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCC
Confidence 111233333 356666 54 67888888776 7 998876 9999999999999
Q ss_pred EEEEEecCcc-ccCCCC---CCccc--ceEEEecCccccccCCCCC-CcEEEEEEchhhHhcCCCceeeeeecCCCCcce
Q 001989 328 KVVMATDLLA-LTILKP---PGELG--ADIVVGSAQRFGVPMGYGG-PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPAL 400 (985)
Q Consensus 328 lliV~a~~~~-lg~l~~---~~~~G--aDi~v~s~k~lg~P~~~GG-P~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~ 400 (985)
++++| +.++ +|.... ...+| .|+++. +|.++ || -.+|++.+++++++.+... ...+. +
T Consensus 251 llI~D-Ev~~g~g~~g~~~~~~~~~~~~di~t~-sK~l~-----~G~~~ig~~~~~~~i~~~~~~~-------~~~~~-~ 315 (452)
T 3n5m_A 251 LLISD-EVICGFGRTGKAFGFMNYDVKPDIITM-AKGIT-----SAYLPLSATAVKREIYEAFKGK-------GEYEF-F 315 (452)
T ss_dssp EEEEE-CTTTTTTTTSSSSGGGGTTCCCSEEEE-CGGGG-----TTSSCCEEEEEEHHHHGGGCSS-------STTCS-C
T ss_pred EEEEe-cchhCCCcccccchhhhcCCCCCEEee-ccccc-----CCCcceEEEEECHHHHHHHhhc-------cCCCC-c
Confidence 99995 3322 432211 12233 576653 48885 23 3578899999988876210 00000 0
Q ss_pred eeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEc-CCCCc
Q 001989 401 RVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQ-GLPFF 475 (985)
Q Consensus 401 ~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~-~~~~~ 475 (985)
. ..+|.+. ++.+..+..++ +..+..+ ++.++..++.+++++.|+++ +.+..+ ....+
T Consensus 316 ~------------~~~t~~~-~~~~~aaa~aa--l~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~ 377 (452)
T 3n5m_A 316 R------------HINTFGG-NPAACALALKN--LEIIENE---NLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLL 377 (452)
T ss_dssp C------------CCCSSTT-CHHHHHHHHHH--HHHHHHT---THHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSC
T ss_pred c------------ccCCCCC-CHHHHHHHHHH--HHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEE
Confidence 0 0122221 11112122222 2333222 34555666667777766543 323322 11112
Q ss_pred ceEEEe-cC-------C--HHHHHHHHHHcCceeeeec------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 476 DTVKVK-CA-------D--AHAIASAAYKIEMNLRVVD------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 476 ~~~~~~-~~-------~--~~~v~~~L~~~GI~~~~~~------~~~lris~t~~~t~edId~li~aL~~ 529 (985)
-.+.+. .. . ..++.+.|.++||.+.... ++.+|++++..+|++|||+++++|.+
T Consensus 378 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~ 447 (452)
T 3n5m_A 378 VGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKT 447 (452)
T ss_dssp EEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 122221 11 1 3578899999999887643 58899999999999999999999874
No 445
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.26 E-value=6.9e-10 Score=129.42 Aligned_cols=282 Identities=11% Similarity=0.109 Sum_probs=155.9
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-h---hc-CCCCEEEEcCCCC-hhHHHHHHHhhc--------C
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-I---QK-GKKKTFIIASNCH-PQTIDICITRAD--------G 278 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~---~~-~~g~~Vlv~~~~H-~s~~~~~~~~a~--------~ 278 (985)
..++.+.++++++.+...+.+++|||.++++++.+.+ . .. .++++||+.+..+ ......+..-.. .
T Consensus 89 ~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 168 (448)
T 3dod_A 89 ATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGP 168 (448)
T ss_dssp HHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-------------------------
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccC
Confidence 3456788999997666789899999999888875432 2 20 1268998877655 433332211000 0
Q ss_pred CCeEEEEeC-------------------chhhhc-cC---CCEeEEEEEcC--CCCeeecc----HHHHHHHHHhCCcEE
Q 001989 279 FDIKVVVSD-------------------LKDIDY-KS---GDVCGVLVQYP--GTEGEVLD----YGDFIKNAHANGVKV 329 (985)
Q Consensus 279 ~gi~v~~v~-------------------~~~l~~-l~---~~t~~V~v~~p--n~~G~v~d----i~~I~~~a~~~gall 329 (985)
....+..++ +++|++ +. +++++|++..+ +..|.+.+ +++|.++|+++|+++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~l 248 (448)
T 3dod_A 169 LMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLM 248 (448)
T ss_dssp ----CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEE
T ss_pred CCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEE
Confidence 011222232 345665 54 56777777654 66787765 999999999999999
Q ss_pred EEEecCcc-ccCCCCC---Cccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeee
Q 001989 330 VMATDLLA-LTILKPP---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVA 403 (985)
Q Consensus 330 iV~a~~~~-lg~l~~~---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~ 403 (985)
|+| +.++ +|..... ..+| .|+++. +|.|++ |.-.+|++.+++++++.+...... ... +
T Consensus 249 I~D-Ev~~g~g~~g~~~a~~~~~~~~di~t~-sK~l~~----G~~~ig~v~~~~~~~~~~~~~~~~------~~~-~--- 312 (448)
T 3dod_A 249 IVD-EVATGFGRTGKMFACEHENVQPDLMAA-GKGITG----GYLPIAVTFATEDIYKAFYDDYEN------LKT-F--- 312 (448)
T ss_dssp EEE-CTTTTTTTTSSSSGGGGGTCCCSEEEE-CGGGGT----TSSCCEEEEEEHHHHHTTCSCGGG------CCC-C---
T ss_pred EEe-ccccCCCcccchhhhhhcCCCCCEEEe-cccccC----CcCceEEEEECHHHHHHhhhcccc------CCc-c---
Confidence 995 3333 4322111 1233 476654 488852 212357888899988876320000 000 0
Q ss_pred cccccccccccccCCCccchh-HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc---CCCeEEc-CCCCcceE
Q 001989 404 MQTREQHIRRDKATSNICTAQ-ALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK---LGTVEVQ-GLPFFDTV 478 (985)
Q Consensus 404 l~tre~~irre~atsni~t~~-~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~---~g~~~~~-~~~~~~~~ 478 (985)
....|. +.+. +..+..++ +..+..+ ++.++..++.+++++.|.+ .+.+... ....+ +
T Consensus 313 ---------~~~~t~--~~~~~~~aaa~aa--l~~~~~~---~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~g~~--~ 374 (448)
T 3dod_A 313 ---------FHGHSY--TGNQLGCAVALEN--LALFESE---NIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFM--C 374 (448)
T ss_dssp ---------CCCCTT--TTCHHHHHHHHHH--HHHHHHT---THHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTE--E
T ss_pred ---------cccCCC--CcCHHHHHHHHHH--HHHHhcc---cHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeeEE--E
Confidence 001111 1111 12122222 2332222 3455556666666666654 3212221 11111 2
Q ss_pred EEecCC--------------HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 479 KVKCAD--------------AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 479 ~~~~~~--------------~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.... +.++.+.|.++||.+... ++.+|++++..+|++||++++++|.+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-~~~iRi~~~~~~t~e~i~~~l~~l~~ 438 (448)
T 3dod_A 375 GAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPL-GDVIAFLPPLASTAEELSEMVAIMKQ 438 (448)
T ss_dssp EEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEE-TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEccCcccccccchhhHHHHHHHHHHHHCCcEEecc-CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 222221 368999999999988764 48999999999999999999999974
No 446
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.25 E-value=1.1e-09 Score=128.26 Aligned_cols=287 Identities=14% Similarity=0.044 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-hh--c--CCCCEEEEcC-CCChhHHHHHHHhh--------c
Q 001989 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQ--K--GKKKTFIIAS-NCHPQTIDICITRA--------D 277 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~--~--~~g~~Vlv~~-~~H~s~~~~~~~~a--------~ 277 (985)
...++.+.++++++.+..++.+++||+.++++++.+.+ +. + .++++||+.+ ..|......+..-. .
T Consensus 96 ~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 175 (460)
T 3gju_A 96 ASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFD 175 (460)
T ss_dssp HHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTT
T ss_pred HHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccC
Confidence 34456788999987777789999999999988775432 21 0 2567887766 55655544432100 0
Q ss_pred --CCCeEEEEeC-------------------chhhhc-cC----CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCC
Q 001989 278 --GFDIKVVVSD-------------------LKDIDY-KS----GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANG 326 (985)
Q Consensus 278 --~~gi~v~~v~-------------------~~~l~~-l~----~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~g 326 (985)
..++..+.++ +++|++ +. +++++|++..+ +..|.+.+ +++|.++|+++|
T Consensus 176 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~ 255 (460)
T 3gju_A 176 LPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYD 255 (460)
T ss_dssp CSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTT
T ss_pred CCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 1133333222 245655 43 56777777655 56777665 999999999999
Q ss_pred cEEEEEecCcc-ccCCCCC---Cccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcce
Q 001989 327 VKVVMATDLLA-LTILKPP---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPAL 400 (985)
Q Consensus 327 alliV~a~~~~-lg~l~~~---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~ 400 (985)
+++++| +..+ +|..... ..+| .|+++. +|+|++ |+-.+|++.+++++++.+.... +. ... +
T Consensus 256 ~llI~D-Ev~~g~gr~g~~~~~~~~~~~pdi~t~-sK~l~g----G~~~lg~v~~~~~i~~~~~~~~-----~~-~~~-~ 322 (460)
T 3gju_A 256 VLLVAD-EVVTGFGRLGTMFGSDHYGIKPDLITI-AKGLTS----AYAPLSGVIVADRVWQVLVQGS-----DK-LGS-L 322 (460)
T ss_dssp CEEEEE-CTTTTTTTTSSSCHHHHHTCCCSEEEE-CGGGTT----TSSCCEEEEEEHHHHHHHHHHH-----HH-HCS-C
T ss_pred CEEEEe-ccccCCCcccccchHhhcCCCCCeeee-ehhhcC----CCCCeEEEEECHHHHHHHhccc-----cc-ccc-c
Confidence 999995 3333 4322111 1223 466654 388742 3244678888988877651000 00 000 0
Q ss_pred eeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHH----hcCCCeEEcC-CCCc
Q 001989 401 RVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGL----KKLGTVEVQG-LPFF 475 (985)
Q Consensus 401 ~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L----~~~g~~~~~~-~~~~ 475 (985)
....|.+. ++.+..+..++ +..+..++ +.++..++.+++++.| ++.+.+..+. ...+
T Consensus 323 ------------~~~~t~~~-~~~~~aaa~aa--l~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~ 384 (460)
T 3gju_A 323 ------------GHGWTYSA-HPICVAAGVAN--LELIDEMD---LVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGML 384 (460)
T ss_dssp ------------SCCCTTTT-CHHHHHHHHHH--HHHHHHTT---HHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTE
T ss_pred ------------ccCCCCCC-CHHHHHHHHHH--HHHHHhcc---HHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEE
Confidence 00111111 11112222222 23332233 3344444455555544 4443233221 1111
Q ss_pred ceEEEecC-----------C-HHHHHHHHHHcCceeeeec-CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 476 DTVKVKCA-----------D-AHAIASAAYKIEMNLRVVD-SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 476 ~~~~~~~~-----------~-~~~v~~~L~~~GI~~~~~~-~~~lris~t~~~t~edId~li~aL~~ 529 (985)
-.+.+..+ . +.++.+.|.++||.+.... .+.+|++++...|+||||+++++|.+
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~ 451 (460)
T 3gju_A 385 AAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQGDILGFAPPLCLTREQADIVVSKTAD 451 (460)
T ss_dssp EEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECSSSCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 12222111 1 5688999999999887643 48899999999999999999999974
No 447
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.24 E-value=6.5e-10 Score=130.06 Aligned_cols=280 Identities=12% Similarity=0.116 Sum_probs=159.6
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhh-hh--c--CCCCEEEEcC-CCChhHHHHHHHhhc---------
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQ--K--GKKKTFIIAS-NCHPQTIDICITRAD--------- 277 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~--~--~~g~~Vlv~~-~~H~s~~~~~~~~a~--------- 277 (985)
..++.+.++++++.+..++.+++||+.++++++.+.+ +. + .++++||+.+ .-|......+..-..
T Consensus 96 ~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 175 (459)
T 4a6r_A 96 VVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDL 175 (459)
T ss_dssp HHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CC
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCC
Confidence 3456778999998777789999999999888775433 21 0 1467887766 455444433321000
Q ss_pred -CCCeEEEEeC------------------chhhhc-cC----CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcE
Q 001989 278 -GFDIKVVVSD------------------LKDIDY-KS----GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVK 328 (985)
Q Consensus 278 -~~gi~v~~v~------------------~~~l~~-l~----~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~gal 328 (985)
..++..+.++ +++|++ +. +++++|++..+ +..|.+.+ +++|.++|+++|++
T Consensus 176 ~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~l 255 (459)
T 4a6r_A 176 PIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVL 255 (459)
T ss_dssp SCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCE
T ss_pred CCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 0133333221 345665 43 45676766544 56777776 99999999999999
Q ss_pred EEEEecCcc-ccCCCCC---Ccc--cceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceee
Q 001989 329 VVMATDLLA-LTILKPP---GEL--GADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRV 402 (985)
Q Consensus 329 liV~a~~~~-lg~l~~~---~~~--GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l 402 (985)
+++| +.++ +|..... ..+ ..|+++. +|.|++ ||-.+|++.+++++.+.+... .. +
T Consensus 256 lI~D-Ev~~g~gr~G~~~~~~~~~~~pdi~t~-sK~l~g----g~~~lg~v~~~~~i~~~~~~~----------~~-~-- 316 (459)
T 4a6r_A 256 LVAD-EVICGFGRTGEWFGHQHFGFQPDLFTA-AKGLSS----GYLPIGAVFVGKRVAEGLIAG----------GD-F-- 316 (459)
T ss_dssp EEEE-CTTTTTTTTSSSSHHHHHTCCCSEEEE-CGGGGT----TSSCCEEEEECHHHHHHHHHH----------CT-T--
T ss_pred EEEe-ccccCCCcccccchHhhcCCCCCeeeh-hhhhcC----CCCCccceeeCHHHHHHhhcC----------CC-c--
Confidence 9995 3332 3322111 112 3577654 387752 334568888898887765200 00 0
Q ss_pred ecccccccccccccCCCccchhHHHHHHHHH-HHHHhCcchHHHHHHHHH-HHHHHHHHHH----hcCCCeEEcC-CCCc
Q 001989 403 AMQTREQHIRRDKATSNICTAQALLANMAAM-YAVYHGPEGLKTIAQRVH-GLAGTFALGL----KKLGTVEVQG-LPFF 475 (985)
Q Consensus 403 ~l~tre~~irre~atsni~t~~~l~a~~aa~-~l~~~g~~Gl~~i~~~~~-~~a~~l~~~L----~~~g~~~~~~-~~~~ 475 (985)
....|.+. .++ +..|++ .+..+..++ +.++.. ++.+++++.| .+.+.+..+. ...+
T Consensus 317 ----------~~~~t~~~---~~~-~~aaa~aal~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~ 379 (459)
T 4a6r_A 317 ----------NHGFTYSG---HPV-CAAVAHANVAALRDEG---IVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMV 379 (459)
T ss_dssp ----------HHHHHHCS---CHH-HHHHHHHHHHHHHHTC---HHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETTE
T ss_pred ----------ccCCCCCC---CHH-HHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEE
Confidence 00011111 112 222222 123332233 344444 5555555555 4333233221 1111
Q ss_pred ceEEEecC----------C--HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 476 DTVKVKCA----------D--AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 476 ~~~~~~~~----------~--~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
-.+.+..+ . +.++.+.|.++||.+.... +.+|++++...|++|+|+++++|.+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~~~~~~t~e~i~~~l~~l~~ 444 (459)
T 4a6r_A 380 QAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACG-DHIVSAPPLVMTRAEVDEMLAVAER 444 (459)
T ss_dssp EEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecCC-CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 11222111 1 5678899999999887643 8999999999999999999999975
No 448
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.24 E-value=8.1e-10 Score=129.78 Aligned_cols=280 Identities=11% Similarity=0.107 Sum_probs=165.3
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHH-hhhh--c--CCCCEEEEcC-CCChhHHHHHHHhh---------c
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMC-NNIQ--K--GKKKTFIIAS-NCHPQTIDICITRA---------D 277 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a-~~~~--~--~~g~~Vlv~~-~~H~s~~~~~~~~a---------~ 277 (985)
..++.+.++++++.+..++.+++||+.++++++.+ +.+. + .++++||+.+ .-|......+..-. .
T Consensus 101 ~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~ 180 (472)
T 3hmu_A 101 AIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGL 180 (472)
T ss_dssp HHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCC
Confidence 34567889999987777898999999998887754 3321 1 1467777655 56655544432100 0
Q ss_pred CCCeEEEEeC------------------chhhhc-cC----CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEE
Q 001989 278 GFDIKVVVSD------------------LKDIDY-KS----GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKV 329 (985)
Q Consensus 278 ~~gi~v~~v~------------------~~~l~~-l~----~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~gall 329 (985)
..++..+..| +++|++ +. +++++|++..+ +..|.+.+ +++|.++|+++|+++
T Consensus 181 ~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gill 260 (472)
T 3hmu_A 181 IPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILL 260 (472)
T ss_dssp CSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEE
T ss_pred CCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 0133333221 345555 43 56777777654 56788877 999999999999999
Q ss_pred EEEecCcc-ccCCCCC---Cccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeee
Q 001989 330 VMATDLLA-LTILKPP---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVA 403 (985)
Q Consensus 330 iV~a~~~~-lg~l~~~---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~ 403 (985)
|+| +..+ +|-.... ..+| .|+++. +|++++ ||-.+|++.+++++++.+..+. +.
T Consensus 261 I~D-Ev~~gfgr~G~~~a~~~~~v~pdi~t~-sK~l~g----g~~plG~v~~~~~i~~~~~~~~------------~~-- 320 (472)
T 3hmu_A 261 IAD-EVICGFGRTGNWFGTQTMGIRPHIMTI-AKGLSS----GYAPIGGSIVCDEVAHVIGKDE------------FN-- 320 (472)
T ss_dssp EEE-CTTTTTTTTSSSCHHHHHTCCCSEEEE-CGGGTT----TSSCCEEEEEEHHHHHHHTTSC------------BC--
T ss_pred EEE-ccccCCcccCccchhHHhCCCCceeee-chhhhc----CCcceEEEEECHHHHHhcccCC------------cc--
Confidence 995 3332 4322111 1123 577754 387752 4334578888998887662110 00
Q ss_pred cccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHH-HHHHHHHHHHhcCC---CeEEc-CCCCcceE
Q 001989 404 MQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVH-GLAGTFALGLKKLG---TVEVQ-GLPFFDTV 478 (985)
Q Consensus 404 l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~-~~a~~l~~~L~~~g---~~~~~-~~~~~~~~ 478 (985)
...|.+. .+.+..+..+++ ..+.. +++.++.. ++.+++++.|+++. .+..+ ....+-.+
T Consensus 321 ----------~~~t~~~-np~a~aAa~aaL--~~~~~---~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i 384 (472)
T 3hmu_A 321 ----------HGYTYSG-HPVAAAVALENL--RILEE---ENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASI 384 (472)
T ss_dssp ----------CCCTTTT-CHHHHHHHHHHH--HHHHH---TTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEETTEEEE
T ss_pred ----------ccCCCCC-CHHHHHHHHHHH--HHHHH---hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceEEE
Confidence 0111111 111122222222 33322 24556666 77788888887652 12222 11111122
Q ss_pred EEecC-----------C--HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 479 KVKCA-----------D--AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 479 ~~~~~-----------~--~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+... . +.++.+.|.++||.++... +.+|++++...|++|||+++++|.+
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~p~~~~t~e~i~~~l~~l~~ 447 (472)
T 3hmu_A 385 ALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVG-DRMIISPPLVITPAEIDEMFVRIRK 447 (472)
T ss_dssp EECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEET-TEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEecCccccccccchhHHHHHHHHHHHHHCCcEEEecC-CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22211 2 5678899999999987654 8999999999999999999999985
No 449
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.23 E-value=2.8e-09 Score=124.41 Aligned_cols=275 Identities=14% Similarity=0.112 Sum_probs=157.3
Q ss_pred HHHHHHHHHHhcCCC-CcceeeccchHHHHHHHHH-HhhhhcCCCCEEEEcCC-CChhHHHHHHHhh------cC---C-
Q 001989 213 LLNFQTMIADLTGLP-MSNASLLDEGTAAAEAMAM-CNNIQKGKKKTFIIASN-CHPQTIDICITRA------DG---F- 279 (985)
Q Consensus 213 i~e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~~-a~~~~~~~g~~Vlv~~~-~H~s~~~~~~~~a------~~---~- 279 (985)
..++.+.++++++.+ ...+.+++|||.++++++. ++.+. ++++||+.+. -|......+..-. .. .
T Consensus 106 ~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~--g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~ 183 (451)
T 3oks_A 106 YVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHT--HKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFA 183 (451)
T ss_dssp HHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHH--CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCC
T ss_pred HHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhc--CCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCC
Confidence 345677899998754 3568889999999888774 44334 5678877664 5544443332100 00 1
Q ss_pred -CeEEEEeCc----------------hhhh-------c-cC-CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcE
Q 001989 280 -DIKVVVSDL----------------KDID-------Y-KS-GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVK 328 (985)
Q Consensus 280 -gi~v~~v~~----------------~~l~-------~-l~-~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~gal 328 (985)
++....++. ++++ + ++ +++++|++... +..|.+.+ +++|.++|+++|++
T Consensus 184 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~ 263 (451)
T 3oks_A 184 PEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVV 263 (451)
T ss_dssp SSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCE
T ss_pred CCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCE
Confidence 333332220 1121 2 23 34565655443 45677765 99999999999999
Q ss_pred EEEEecCcc-ccCCCC---CCccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceee
Q 001989 329 VVMATDLLA-LTILKP---PGELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRV 402 (985)
Q Consensus 329 liV~a~~~~-lg~l~~---~~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l 402 (985)
+|+| +..+ +|.... ...+| .|+++. +|.|++ |-.+|++.+++++++.+.....
T Consensus 264 lI~D-Ev~~g~g~~g~~~~~~~~~~~pdi~t~-sK~l~~-----G~~iG~v~~~~~~~~~~~~~~~-------------- 322 (451)
T 3oks_A 264 FIAD-EVQTGFARTGAMFACEHEGIDPDLIVT-AKGIAG-----GLPLSAVTGRAEIMDSPHVSGL-------------- 322 (451)
T ss_dssp EEEE-CTTTTTTTTSSSSGGGGGTCCCSEEEE-CGGGGT-----TSSCEEEEEEHHHHTCSCTTSB--------------
T ss_pred EEEE-ecccCCCccccchhhhhcCCCCCeeee-hhhhhC-----CcceEEEEECHHHHhhhcCCCc--------------
Confidence 9995 3332 332211 12233 577643 488853 2346788889988876621100
Q ss_pred ecccccccccccccCCCccchhH-HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEc-CCCCcc
Q 001989 403 AMQTREQHIRRDKATSNICTAQA-LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQ-GLPFFD 476 (985)
Q Consensus 403 ~l~tre~~irre~atsni~t~~~-l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~-~~~~~~ 476 (985)
..|. +.+.. ..+..++ +..+..+ ++.++..++.+++++.|+++ +.+..+ ....+-
T Consensus 323 ------------~~t~--~~~~~~~aaa~aa--l~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~ 383 (451)
T 3oks_A 323 ------------GGTY--GGNPIACAAALAT--IETIESE---GLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMI 383 (451)
T ss_dssp ------------CCSS--SSCHHHHHHHHHH--HHHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEE
T ss_pred ------------CCCC--CCCHHHHHHHHHH--HHHHhhh---hHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEE
Confidence 1111 11111 1122222 2332222 34555666667777766653 223222 111121
Q ss_pred eEEEec-----CC---HHHHHHHHHHcCceeeeec--CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 477 TVKVKC-----AD---AHAIASAAYKIEMNLRVVD--SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 477 ~~~~~~-----~~---~~~v~~~L~~~GI~~~~~~--~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.+.+.. +. +.++.+.|.++||.+.... .+.+|++++..+|++|||+++++|.+
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~ 446 (451)
T 3oks_A 384 AMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEE 446 (451)
T ss_dssp EEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 233321 22 6788999999999886543 47899999999999999999999873
No 450
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.22 E-value=8.4e-12 Score=144.84 Aligned_cols=242 Identities=10% Similarity=-0.041 Sum_probs=144.8
Q ss_pred CCCCEEEEcCCCCcccHHHHHHCCcEEEEEcCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccccCHHHHHHHH
Q 001989 678 HHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKII 756 (985)
Q Consensus 678 ~~~~~IIv~~~~Hg~~~~~a~~~G~~vv~v~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~~di~eI~~la 756 (985)
.++++|+++.+.|..+...++..|++++... +|+++|+++++ +++++|++++| |++|.+. + + + +
T Consensus 153 ~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~------~d~~~l~~~~~---~~~k~v~l~~p~NPtG~~~-~-~-~---l 217 (427)
T 2hox_A 153 APESKVVAHAPFYPVFREQTKYFDKKGYVWA------GNAANYVNVSN---PEQYIEMVTSPNNPEGLLR-H-A-V---I 217 (427)
T ss_dssp SCCEEEEECSSCCHHHHHHHHHSCBTTEEEE------EEGGGGTTCSC---GGGEEEEEESSCTTTCCCC-C-C-S---S
T ss_pred CCCCEEEEeCCCcccHHHHHHHcCCeeeeec------CCHHHHHHhhc---CCceEEEEcCCCCCccccc-H-H-H---H
Confidence 3678999999888777777788898876544 47888888776 67899999999 4799987 5 3 2 3
Q ss_pred HHcCCEEEEEccccccccCCCCCCccCCcEEEeCCcccccccCCCCCCceEEEEEc-ccccCcCCCCccccCCCCCCCCC
Q 001989 757 HDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEK 835 (985)
Q Consensus 757 ~~~galliVD~a~~~~~~~l~~pg~~g~Di~~~s~hK~l~~p~g~GGPg~G~i~~~-~~l~~~lp~~~~g~~~~~~~~~~ 835 (985)
+ ++..++|.++......+.. ...+.|+++.|++|+|+.| |.++|+++++ +++.+.+.....
T Consensus 218 ~--~~~~i~d~~~~~~~~s~~~-~~~~~~i~~~S~SK~~g~~----G~RiG~~~~~~~~l~~~l~~~~~----------- 279 (427)
T 2hox_A 218 K--GCKSIYDMVYYWPHYTPIK-YKADEDILLFTMSKFTGHS----GSRFGWALIKDESVYNNLLNYMT----------- 279 (427)
T ss_dssp T--TCEEEEECTTCSTTTSCCC-SCBCCSEEEEEHHHHTSCG----GGCCEEEEECCHHHHHHHHHHHH-----------
T ss_pred c--CCCEEEeecccCCCCCccc-cCCCceEEEEeChhcCCCC----CceEEEEEECCHHHHHHHHHHHH-----------
Confidence 3 5678888765321111111 1146799999999998644 5679999995 666544321100
Q ss_pred CCCCCCCCCcchhhhHHHHHHHHHHHHh---------c-HHHHHHHHHHHHHHHHHHHHHhhccCCeee---c-------
Q 001989 836 SQPLGTIAAAPWGSALILPISYTYIAMM---------G-SKGLTEASKIAILNANYMAKRLEKHYPILF---R------- 895 (985)
Q Consensus 836 ~~~~~~i~s~~~g~~~~~~~a~a~l~~l---------g-~eGl~~~~~~~~~~a~~l~~~L~~g~~l~~---~------- 895 (985)
....+++ ...+. ++..+|... + .+-+++..++..++.+++.+.|++..++.+ .
T Consensus 280 -~~~~~~~--~~~q~----a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~ 352 (427)
T 2hox_A 280 -KNTEGTP--RETQL----RSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNY 352 (427)
T ss_dssp -HHTSSCC--HHHHH----HHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETT
T ss_pred -hcCCCCC--HHHHH----HHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCcccccccccccccc
Confidence 0011111 11121 112223221 0 112334445567778889999976322211 0
Q ss_pred ----CCCCceeeEEEEEecCccccCCCCHHHHHHHHH-HCCCccCC-CCCCC-CCEEEEeccCCCCHHHHHHHHccCChh
Q 001989 896 ----GVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYGFHGPT-MSWPV-PGTLMIEPTESESKSWTGIVMLSSPSE 968 (985)
Q Consensus 896 ----~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~-~~Gi~~~~-~~~p~-~~~lris~t~~~t~eeId~~~~~~~l~ 968 (985)
.+.+..+ +.++++ . +..+++++|. ++||.+.. ..|+. ++++|||+.. ++++|++ +++.|+
T Consensus 353 ~~~~~p~~g~f--~~~~~~------~-~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~~--~~e~l~~--~l~~l~ 419 (427)
T 2hox_A 353 FRRMRPPSPSY--AWVKCE------W-EEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIK--TQDDFDQ--LMYYLK 419 (427)
T ss_dssp TTEEECCCCSE--EEEEEC------S-GGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSS--CHHHHHH--HHHHHH
T ss_pred ccccCCCCceE--EEEECC------C-cHHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEecC--CHHHHHH--HHHHHH
Confidence 1111222 335554 1 3445677764 78998753 23432 5899999984 8899999 667777
Q ss_pred HHHH
Q 001989 969 KKLH 972 (985)
Q Consensus 969 ~~~~ 972 (985)
+++.
T Consensus 420 ~~~~ 423 (427)
T 2hox_A 420 DMVK 423 (427)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6653
No 451
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=98.86 E-value=9.9e-13 Score=150.51 Aligned_cols=270 Identities=11% Similarity=0.053 Sum_probs=166.8
Q ss_pred HHHHHHHHh----cC--CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC-
Q 001989 215 NFQTMIADL----TG--LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD- 287 (985)
Q Consensus 215 e~q~~ia~L----~g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~- 287 (985)
++++.++++ .| .++.++.+++|++.++++++.++. ++||+|+++...|+.+...++ ..|.+++.++
T Consensus 70 ~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~---~~gd~vl~~~p~~~~~~~~~~----~~g~~~~~~~~ 142 (392)
T 3b1d_A 70 ELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFT---KEGEAVLINSPVYPPFARSVR----LNNRKLVSNSL 142 (392)
Confidence 344555554 45 455678888999988777665542 378999999999998887764 3455555543
Q ss_pred ----------chhhhc-cC-CCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecCccccCC-----CCC--
Q 001989 288 ----------LKDIDY-KS-GDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL-----KPP-- 344 (985)
Q Consensus 288 ----------~~~l~~-l~-~~t~~V~v~~p-n~~G~v~d---i~~I~~~a~~~galliV~a~~~~lg~l-----~~~-- 344 (985)
++++++ +. +++++|++.+| |.+|.+.+ +++|.++|+++|+++++|. ..+.... .+.
T Consensus 143 ~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De-~~~~~~~~g~~~~~~~~ 221 (392)
T 3b1d_A 143 KEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDE-IHQDLTLFGHEHVSFNT 221 (392)
Confidence 344555 55 67888888888 67998864 9999999999999999942 2221111 011
Q ss_pred -C-c-ccceEEEecC-ccccccCCCCCCcEEEEEEch-hhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCC
Q 001989 345 -G-E-LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 345 -~-~-~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~-~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsn 419 (985)
. + .+.+++++|. |.|+. +|..+|++.+++ ++++.+.... . ...
T Consensus 222 ~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~~----------~------------------~~~ 269 (392)
T 3b1d_A 222 VSPDFKDFALVLSSATKTFNI----AGTKNSYAIIENPTLCAQFKHQQ----------L------------------VNN 269 (392)
Confidence 1 1 4566888887 88753 344568888764 3555441100 0 000
Q ss_pred ccchhHHHHHHHHH-HHHHhCcchHHHHHHHHHHHHHHHHHHHhc-CCCeEEcCCCCcceEE-EecC----CHHHHHHHH
Q 001989 420 ICTAQALLANMAAM-YAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQGLPFFDTVK-VKCA----DAHAIASAA 492 (985)
Q Consensus 420 i~t~~~l~a~~aa~-~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~~~~~~~~~~-~~~~----~~~~v~~~L 492 (985)
+++...+ +..++. .+. .+.+.++++.++..++.+++.+.|++ ++++++..+ ...-+. +..+ +..++.+.|
T Consensus 270 ~~~~~~~-~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~l 346 (392)
T 3b1d_A 270 HHEVSSL-GYIATETAYR-YGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKP-QGTYLIWLDFSDYGLTDDALFTLL 346 (392)
Confidence 1111111 111111 112 23455778888888899999999987 533765432 111111 2322 156788888
Q ss_pred H-HcCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 493 Y-KIEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 493 ~-~~GI~~~~~------~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. ++||.+... .++.+|++++. ++++|+++++.|.+
T Consensus 347 ~~~~gi~v~~g~~f~~~~~~~iRi~~~~--~~e~i~~~l~~l~~ 388 (392)
T 3b1d_A 347 HDQAKVILNRGSDYGSEGELHARLNIAA--PKSLVEEICKRIVC 388 (392)
Confidence 6 789987542 24679999775 57899998888864
No 452
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.22 E-value=4.9e-11 Score=136.20 Aligned_cols=273 Identities=11% Similarity=0.031 Sum_probs=162.8
Q ss_pred HHHHHHHHHhc---C---CCCcceee--ccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001989 214 LNFQTMIADLT---G---LPMSNASL--LDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 214 ~e~q~~ia~L~---g---~~~~~~sl--~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~ 285 (985)
.++++.+|+++ + .++.++.+ +.|+|.+++.++.++... ++||+|+++...|+.+...++. .|.+++.
T Consensus 72 ~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~-~~gd~Vl~~~p~y~~~~~~~~~----~g~~~~~ 146 (396)
T 2q7w_A 72 PEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKN-TSVKRVWVSNPSWPNHKSVFNS----AGLEVRE 146 (396)
T ss_dssp HHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH-SCCCEEEEEESCCTHHHHHHHH----TTCEEEE
T ss_pred HHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHh-CCCCEEEEcCCCchhHHHHHHH----cCCceEE
Confidence 34667788877 2 23557777 899998888776443311 2789999999999998888753 4777777
Q ss_pred eCc----------hhhhc-cCC---CEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccCCC-----
Q 001989 286 SDL----------KDIDY-KSG---DVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK----- 342 (985)
Q Consensus 286 v~~----------~~l~~-l~~---~t~~V~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~l~----- 342 (985)
++. +++++ +++ +++++++.+| |.+|.+. ++++|+++|+++|+++++|. ..+.....
T Consensus 147 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De-~~~~~~~~~~~~~ 225 (396)
T 2q7w_A 147 YAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDF-AYQGFARGLEEDA 225 (396)
T ss_dssp EECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEE-SCTTSSSCHHHHT
T ss_pred EecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEec-ccccccCCccchh
Confidence 654 34555 543 4777787887 6799885 56789999999999999953 22211111
Q ss_pred -CCC---ccc-ceEEEecC-ccccccCCCCCCcEEEEEE---chhhHhcCCCceeeeeecCCCCcceeeecccccccccc
Q 001989 343 -PPG---ELG-ADIVVGSA-QRFGVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR 413 (985)
Q Consensus 343 -~~~---~~G-aDi~v~s~-k~lg~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irr 413 (985)
+.. ..+ -+++++|. |.|+.| |-.+|++++ +++.++.+-.. + ....+
T Consensus 226 ~~~~~~~~~~~~~i~~~s~sK~~~~~----G~riG~~~~~~~~~~~~~~~~~~-----------------~----~~~~~ 280 (396)
T 2q7w_A 226 EGLRAFAAMHKELIVASSYSXNFGLY----NERVGACTLVAADSETVDRAFSQ-----------------M----KAAIR 280 (396)
T ss_dssp HHHHHHHHHCSCEEEEEECTTTTTCG----GGCCEEEEEECSSHHHHHHHHHH-----------------H----HHHHH
T ss_pred HHHHHHHhcCCcEEEEEecccccccc----ccccceEEEEcCCHHHHHHHHHH-----------------H----HHHHh
Confidence 011 122 35777886 766422 122588886 55433222000 0 00001
Q ss_pred cccCCCccchhHHHHHHHHHHHHHh-----CcchHHHHHHHHHHHHHHHHHHHhcCC---CeEEcCCCCcceEEE-ecCC
Q 001989 414 DKATSNICTAQALLANMAAMYAVYH-----GPEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQGLPFFDTVKV-KCAD 484 (985)
Q Consensus 414 e~atsni~t~~~l~a~~aa~~l~~~-----g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~~~~~~-~~~~ 484 (985)
.+.+.++.....+..+++ ... -.+.++++.++..++.+++.+.|+++| ++++.. +...-+.+ ..+
T Consensus 281 --~~~~~~~~~~~~a~~~~l--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~- 354 (396)
T 2q7w_A 281 --ANYSNPPAHGASVVATIL--SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFII-KQNGMFSFSGLT- 354 (396)
T ss_dssp --TTTSSCCHHHHHHHHHHH--TSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHH-HCCSSEEECCCC-
T ss_pred --hccCCCCcHHHHHHHHHh--cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceec-CCCceEEEecCC-
Confidence 111111112222221211 110 024567788888899999999999886 244321 11111222 222
Q ss_pred HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 485 AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 485 ~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
...+.+.|.++||.+.. .+|++++.. |++|+++++++|+
T Consensus 355 ~~~~~~~l~~~gv~v~~----~~Ris~~~~-~~e~i~~~~~~l~ 393 (396)
T 2q7w_A 355 KEQVLRLREEFGVYAVA----SGRVNVAGM-TPDNMAPLCEAIV 393 (396)
T ss_dssp HHHHHHHHHHHCEECCT----TCEEEGGGC-CTTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCeeecC----CceEEEeec-CHHHHHHHHHHHH
Confidence 55666777788998864 379999854 8999999999886
No 453
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.22 E-value=5.2e-10 Score=129.51 Aligned_cols=275 Identities=11% Similarity=0.116 Sum_probs=151.9
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHH-HhhhhcCCCCEEEEcC-CCChhHHHHHHHh---------hcCCCe
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAM-CNNIQKGKKKTFIIAS-NCHPQTIDICITR---------ADGFDI 281 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~-a~~~~~~~g~~Vlv~~-~~H~s~~~~~~~~---------a~~~gi 281 (985)
..++.+.++++++ +...+.+++|||.++++++. ++.+. ++++||+.+ ..|......+... ....++
T Consensus 95 ~~~la~~l~~~~~-~~~~v~~~~sGsea~~~al~~a~~~~--~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~ 171 (429)
T 4e77_A 95 EVKMAQLVTDLVP-TMDMVRMVNSGTEATMSAIRLARGYT--GRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGV 171 (429)
T ss_dssp HHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHH--CCCEEEEETTCCCC------------------CCCTTS
T ss_pred HHHHHHHHHhhCC-CCCEEEEeCcHHHHHHHHHHHHHHhh--CCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCC
Confidence 3456678899987 55678899999988887764 33333 566777655 5565544322100 001111
Q ss_pred ------EEEEe---Cchhhhc-cC---CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecCcc-c--cC
Q 001989 282 ------KVVVS---DLKDIDY-KS---GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLA-L--TI 340 (985)
Q Consensus 282 ------~v~~v---~~~~l~~-l~---~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~~-l--g~ 340 (985)
.+..+ |+++|++ +. +++++|++... +..|.+.+ +++|.++|+++|+++++|. .++ + |.
T Consensus 172 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DE-v~~g~r~g~ 250 (429)
T 4e77_A 172 PTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDE-VMTGFRVAL 250 (429)
T ss_dssp CGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEE-TTTBTTTBT
T ss_pred CCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec-cccCcccCc
Confidence 22233 3456665 43 56777776543 45688887 9999999999999999953 333 1 11
Q ss_pred CCCCCccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCC
Q 001989 341 LKPPGELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATS 418 (985)
Q Consensus 341 l~~~~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~ats 418 (985)
......+| .|+++. +|.|++ |-.+|++.+++++++.+... ...+ ..+|.
T Consensus 251 ~~~~~~~~~~pdi~t~-sK~~~~-----G~~~G~~~~~~~~~~~l~~~----------~~~~-------------~~~t~ 301 (429)
T 4e77_A 251 AGAQDYYHVIPDLTCL-GKIIGG-----GMPVGAFGGRREVMNALAPT----------GPVY-------------QAGTL 301 (429)
T ss_dssp TCHHHHTTCCCSEEEE-EGGGGT-----TSCCEEEEECHHHHTTBTTT----------SSBC-------------C--CC
T ss_pred chHHHhcCCCCCeeee-cccccC-----CCCeEEEEECHHHHHHhccC----------CCcc-------------ccCCC
Confidence 11111233 477533 388852 33468888999888766310 0000 01121
Q ss_pred CccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEcCCCCcceEEEecCC----------
Q 001989 419 NICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQGLPFFDTVKVKCAD---------- 484 (985)
Q Consensus 419 ni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~---------- 484 (985)
+. ++.+..+..++ +..+.. +++.++..++.+++++.|+++ + +.........-+.+..++
T Consensus 302 ~~-~~~~~aaa~aa--l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 374 (429)
T 4e77_A 302 SG-NPIAMAAGFAC--LTEISQ---VGVYETLTELTDSLATGLRHAAKEEN-IPLVVNHVGGMFGLFFTNADTVTCYQDV 374 (429)
T ss_dssp CC-CHHHHHHHHHH--HHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHTT-CCCEEEEETTEEEEECCSSSCCCSHHHH
T ss_pred CC-CHHHHHHHHHH--HHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCC-CceEEEEeeeEEEEEEccCccccccccc
Confidence 11 11122222222 244433 345556666777777777653 3 211000001112232221
Q ss_pred -------HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 485 -------AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 -------~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
..++.+.|.++||.+.......+ ++...+|+||+|+++++|.+
T Consensus 375 ~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~--~~~~~~t~e~i~~~l~~l~~ 424 (429)
T 4e77_A 375 MNCDVERFKRFFHLMLEEGVYLAPSAFEAG--FMSLAHSNEDIQKTVNAARR 424 (429)
T ss_dssp HTSCHHHHHHHHHHHHHTTEECCSSTTSCE--ECCTTCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHCCeEEeecCCCCE--EEeccCCHHHHHHHHHHHHH
Confidence 37899999999998876433444 45678899999999999874
No 454
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.21 E-value=1.3e-09 Score=127.27 Aligned_cols=272 Identities=11% Similarity=0.059 Sum_probs=150.0
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHH-hhhhcCCCCEEEEcCCCCh-hHHHHHHHh------hcCCCeE---
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMC-NNIQKGKKKTFIIASNCHP-QTIDICITR------ADGFDIK--- 282 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a-~~~~~~~g~~Vlv~~~~H~-s~~~~~~~~------a~~~gi~--- 282 (985)
.++.+.++++++ +..++.+++||+.++++++.+ +.+. ++++||+.+..|+ .....+... ....|+.
T Consensus 100 ~~la~~l~~~~~-~~~~v~~~~gg~eA~~~al~~ar~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~ 176 (453)
T 2cy8_A 100 VRWAERIVAAFP-SIRKLRFTGSGTETTLLALRVARAFT--GRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPET 176 (453)
T ss_dssp HHHHHHHHHHCT-TCSEEEEESCHHHHHHHHHHHHHHHH--CCCEEEEECC----------------------------C
T ss_pred HHHHHHHHhhCC-CCCEEEEeCCHHHHHHHHHHHHHHhh--CCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccc
Confidence 345567777775 556788999999888877754 2234 4567777775444 332221100 0012332
Q ss_pred ---EEEe---Cchhhhc-cC---CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecCccccCC-CCCC-
Q 001989 283 ---VVVS---DLKDIDY-KS---GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLALTIL-KPPG- 345 (985)
Q Consensus 283 ---v~~v---~~~~l~~-l~---~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~~lg~l-~~~~- 345 (985)
+..+ |+++|++ +. +++++|++... |.+|.+.+ +++|.++|+++|+++++| +.++ |+. ....
T Consensus 177 ~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~D-Ev~~-g~~~g~~~~ 254 (453)
T 2cy8_A 177 TANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILD-EVIS-GFRVGNHGM 254 (453)
T ss_dssp GGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEE-CTTT-TTTTCTTHH
T ss_pred cCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe-cCcc-ccccCchhh
Confidence 3333 3456666 54 47777776543 45898877 999999999999999995 3444 331 1111
Q ss_pred --cc--cceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCcc
Q 001989 346 --EL--GADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNIC 421 (985)
Q Consensus 346 --~~--GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~ 421 (985)
.+ ..|+++. +|.|++ |..+|++++++++++.+..... + . + ...+|.+.
T Consensus 255 ~~~~~~~~di~s~-sK~l~~-----G~~~G~v~~~~~~~~~l~~~~~-------~-~-~------------~~~~t~~~- 306 (453)
T 2cy8_A 255 QALLDVQPDLTCL-AKASAG-----GLPGGILGGREDVMGVLSRGSD-------R-K-V------------LHQGTFTG- 306 (453)
T ss_dssp HHHHTCCCSEEEE-EGGGGT-----TSSCEEEEECHHHHTTSSSCC------------------------------CCC-
T ss_pred hHHhCCCCcEEEE-ChhhhC-----CcceEEEechHHHHHHhccccC-------C-C-c------------eeCCCCCC-
Confidence 12 3587633 388852 3347899999988877632100 0 0 0 00112111
Q ss_pred chhHHHHHHHHHHHHH-hCcchHHHHHHHHHHHHHHHHHHHhcC----CCe-E-EcCCCCcceEEEec-----C------
Q 001989 422 TAQALLANMAAMYAVY-HGPEGLKTIAQRVHGLAGTFALGLKKL----GTV-E-VQGLPFFDTVKVKC-----A------ 483 (985)
Q Consensus 422 t~~~l~a~~aa~~l~~-~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~-~-~~~~~~~~~~~~~~-----~------ 483 (985)
++....+..++ +.. + . +++.++..++.+++++.|+++ + + . +.+...+-.+.+.. .
T Consensus 307 n~~~~aa~~aa--l~~~~-~---~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~ 379 (453)
T 2cy8_A 307 NPITAAAAIAA--IDTIL-E---DDVCAKINDLGQFAREAMNHLFARKG-LNWLAYGRFSGFHLMPGLPPNTTDTGSITR 379 (453)
T ss_dssp CHHHHHHHHHH--HHHHH-H---TTHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECCTTEEEEEETSCTTCCCCHHHHT
T ss_pred CHHHHHHHHHH--HHHHh-h---hhHHHHHHHHHHHHHHHHHHHHhhCC-CcEEEEEeeeEEEEEEeccccccccccccc
Confidence 11112222222 233 3 3 345667777888888888764 4 3 1 21211121222321 1
Q ss_pred ------C---HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 484 ------D---AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 484 ------~---~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+ ..++.+.|.++||.++. .+.++ ++..+|++||++++++|.+
T Consensus 380 ~~~~~~~~~~~~~l~~~l~~~Gv~v~~--~~~~~--l~~~~t~~~i~~~l~~l~~ 430 (453)
T 2cy8_A 380 AEVARPDVKMIAAMRMALILEGVDIGG--RGSVF--LSAQHEREHVEHLVTTFDR 430 (453)
T ss_dssp TCSCCCCHHHHHHHHHHHHHTTEECBT--TTEEE--CCTTCCHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHCCeEEeC--CCCEE--eeccCCHHHHHHHHHHHHH
Confidence 1 56788999999998853 24444 5678999999999999974
No 455
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.20 E-value=5e-10 Score=129.58 Aligned_cols=273 Identities=13% Similarity=0.156 Sum_probs=155.4
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHH-HHhhhhcCCCCEEEEcC-CCChhHHHHH-------HHh--hcCCCe-
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMA-MCNNIQKGKKKTFIIAS-NCHPQTIDIC-------ITR--ADGFDI- 281 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~-~a~~~~~~~g~~Vlv~~-~~H~s~~~~~-------~~~--a~~~gi- 281 (985)
.++.+.++++++ +..++.+++|||.++++++ ++.... ++++||+.+ ..|......+ ... ....|+
T Consensus 95 ~~la~~l~~~~~-~~~~v~~~~ggsea~~~al~~a~~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (427)
T 3fq8_A 95 NVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYT--GRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVP 171 (427)
T ss_dssp HHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHH--CCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSC
T ss_pred HHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhh--CCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCC
Confidence 456678899987 5667889999998888777 344334 457777655 4454322111 000 001111
Q ss_pred -----EEEEe---Cchhhhc-cC---CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecCccccC-CCC
Q 001989 282 -----KVVVS---DLKDIDY-KS---GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLALTI-LKP 343 (985)
Q Consensus 282 -----~v~~v---~~~~l~~-l~---~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~~lg~-l~~ 343 (985)
.+..+ |+++|++ +. +++++|++..+ +..|.+.+ +++|.++|+++|+++++| +.++ |+ ...
T Consensus 172 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D-Ev~~-g~~~g~ 249 (427)
T 3fq8_A 172 KKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFD-EVIT-GFRIAY 249 (427)
T ss_dssp HHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEE-CTTT-BTTTBT
T ss_pred CcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe-cccc-ccccCc
Confidence 12233 4566666 43 36888877655 56888888 999999999999999995 3333 22 100
Q ss_pred ---CCccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCC
Q 001989 344 ---PGELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATS 418 (985)
Q Consensus 344 ---~~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~ats 418 (985)
...+| .|+++.+ |+|++ |=.+|++.+++++++.+... .. + ...+|.
T Consensus 250 ~~~~~~~~~~~di~t~s-K~~~~-----G~~~G~~~~~~~~~~~~~~~----------~~-~------------~~~~t~ 300 (427)
T 3fq8_A 250 GGVQEKFGVTPDLTTLG-KIIGG-----GLPVGAYGGKREIMQLVAPA----------GP-M------------YQAGTL 300 (427)
T ss_dssp THHHHHTTCCCSEEEEC-GGGGT-----TSSCEEEEECHHHHTTBTTT----------SS-B------------CCCCTT
T ss_pred chhhHhcCCCCChhhhh-hhhhC-----CcceEEEEEcHHHHHhhccC----------CC-c------------cccCCC
Confidence 01233 4765444 88862 22367888999888766310 00 0 011222
Q ss_pred CccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEcCCCCcceEEEecC-----------
Q 001989 419 NICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQGLPFFDTVKVKCA----------- 483 (985)
Q Consensus 419 ni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~----------- 483 (985)
+. ++.+..+..++ +..+..+ ++.++..++.+++++.|+++ + +.........-+.+...
T Consensus 301 ~~-~~~~~aa~~aa--l~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 373 (427)
T 3fq8_A 301 SG-NPLAMTAGIKT--LELLRQP---GTYEYLDQITKRLSDGLLAIAQETG-HAACGGQVSGMFGFFFTEGPVHNYEDAK 373 (427)
T ss_dssp TT-CHHHHHHHHHH--HHHHTST---THHHHHHHHHHHHHHHHHHHHHHTT-CCCEEEEETTEEEEESSSCCCCSHHHHT
T ss_pred Cc-CHHHHHHHHHH--HHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCC-CCeEEEEeeeEEEEEEecCccccccccc
Confidence 11 11122222222 2444333 45566667777777777653 2 11000000111222221
Q ss_pred --C---HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 484 --D---AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 484 --~---~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+ ..++.+.|.++||.+..... -|+++...+|+|||++++++|.+
T Consensus 374 ~~~~~~~~~l~~~l~~~Gi~v~~~~~--~r~~~~~~~t~e~i~~~l~~l~~ 422 (427)
T 3fq8_A 374 KSDLQKFSRFHRGMLEQGIYLAPSQF--EAGFTSLAHTEEDIDATLAAART 422 (427)
T ss_dssp TSCHHHHHHHHHHHHHTTEECCSSTT--SCEECCTTCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHCCcEEecCCC--CCEEeeCcCCHHHHHHHHHHHHH
Confidence 1 46788999999998875332 26667788999999999999874
No 456
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.19 E-value=1.1e-10 Score=136.80 Aligned_cols=270 Identities=14% Similarity=0.083 Sum_probs=156.0
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHHhhhhcCC-----C----CEEEEcCCCC-hhHHHHHHHhhcCCCeE
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGK-----K----KTFIIASNCH-PQTIDICITRADGFDIK 282 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~-----g----~~Vlv~~~~H-~s~~~~~~~~a~~~gi~ 282 (985)
+.++++.+|+++|.+ ++.+++|||.+.++++.+.. . + | |+|+++ ..| +++...+.. .|..
T Consensus 76 ~~~l~~~la~~~~~~--~v~~t~~gt~A~~~al~~~~-~--~~~~~~G~~~~d~Ii~~-~~h~~t~~~~~~~----~~~~ 145 (467)
T 2oqx_A 76 YYALAESVKNIFGYQ--YTIPTHQGRGAEQIYIPVLI-K--KREQEKGLDRSKMVAFS-NYFFDTTQGHSQI----NGCT 145 (467)
T ss_dssp HHHHHHHHHHHHCCS--EEEEEC--CCSHHHHHHHHH-H--HHHHHHCCCTTTCEEEE-SSCCHHHHHHHHH----TTCE
T ss_pred hHHHHHHHHHHhCcC--cEEEcCCcHHHHHHHHHHHh-c--cccccCCCCccceEEec-ccccccchhhhhc----cCcc
Confidence 345788999999975 47888899887777765543 2 3 5 888877 567 333333322 1222
Q ss_pred EEE------------------eCchhhhc-cC----CCEeEEEEEcC-CCC-eee---ccHHHHHHHHHhCCcEEEEEec
Q 001989 283 VVV------------------SDLKDIDY-KS----GDVCGVLVQYP-GTE-GEV---LDYGDFIKNAHANGVKVVMATD 334 (985)
Q Consensus 283 v~~------------------v~~~~l~~-l~----~~t~~V~v~~p-n~~-G~v---~di~~I~~~a~~~galliV~a~ 334 (985)
+.. +|+++|++ ++ ++|++|++.+| |.+ |.+ +++++|+++|+++|+++++|+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~- 224 (467)
T 2oqx_A 146 VRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDS- 224 (467)
T ss_dssp EEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEEC-
T ss_pred eeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEc-
Confidence 221 23456666 64 47999999987 555 765 468999999999999999962
Q ss_pred Cccc-----------cCCC-CCCc------ccceEEEecC-ccccccCCCCCCcEEEEEEchh-hHh---cCCCce-eee
Q 001989 335 LLAL-----------TILK-PPGE------LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQE-YKR---MMPGRI-VGV 390 (985)
Q Consensus 335 ~~~l-----------g~l~-~~~~------~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~-~~~---~lp~~~-vG~ 390 (985)
..+. +... ++.. .++|+++.+. |.++.|. .|+++++++ +++ .+.... .+
T Consensus 225 a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~~------Gg~~~~~~~~~~~~~~~~~~~~~~~- 297 (467)
T 2oqx_A 225 ARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPM------GGLLCMKDDSFFDVYTECRTLCVVQ- 297 (467)
T ss_dssp TTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSS------CEEEEECSGGGHHHHHHHHHHHHHT-
T ss_pred hhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCCC------ceEEEecChhHHHHHHHHHHhhhcc-
Confidence 1222 1111 1222 2489888887 8776442 267777655 332 221000 00
Q ss_pred eecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEc
Q 001989 391 SIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ 470 (985)
Q Consensus 391 t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~ 470 (985)
.+. ...++. ...++.++..++ ..++. ++..++..++++++++.|+++| +++.
T Consensus 298 ----~~~---------------~~~~~~---~~~~~~al~~~l-~~~~~----~~~~~~~~~~~~~l~~~L~~~~-~~~~ 349 (467)
T 2oqx_A 298 ----EGF---------------PTYGGL---EGGAMERLAVGL-YDGMN----LDWLAYRIAQVQYLVDGLEEIG-VVCQ 349 (467)
T ss_dssp ----TSS---------------CCCCCC---CHHHHHHHHHHH-HHTTC----HHHHHHHHHHHHHHHHHHHHTT-CCEE
T ss_pred ----CCc---------------ccccch---hhhHHHHHHHhh-Hhhhh----HHHHHHHHHHHHHHHHHHHHCC-Ceee
Confidence 000 001111 111221211111 11111 1233445678899999998885 7655
Q ss_pred CCCCcceEEEec----CC-------HHHHHHHH-HHcCceeeeec-----------------CCeEEEEeccC-CCHHHH
Q 001989 471 GLPFFDTVKVKC----AD-------AHAIASAA-YKIEMNLRVVD-----------------SNTVTASFDET-TTLEDV 520 (985)
Q Consensus 471 ~~~~~~~~~~~~----~~-------~~~v~~~L-~~~GI~~~~~~-----------------~~~lris~t~~-~t~edI 520 (985)
+.....+.+.+ ++ +.++.++| .++||.+.... .+.+|++++.. +|++||
T Consensus 350 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i 428 (467)
T 2oqx_A 350 -QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHM 428 (467)
T ss_dssp -EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHH
T ss_pred -cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHH
Confidence 21112233333 11 34568888 88899875421 26899999998 999999
Q ss_pred HHHHHHHhC
Q 001989 521 DKLFIVFAG 529 (985)
Q Consensus 521 d~li~aL~~ 529 (985)
++++++|.+
T Consensus 429 ~~~~~~l~~ 437 (467)
T 2oqx_A 429 DFIIEAFKH 437 (467)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999974
No 457
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.18 E-value=3e-10 Score=131.72 Aligned_cols=274 Identities=12% Similarity=0.146 Sum_probs=156.5
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHH-hhhhcCCCCEEEEcCC-CChhHHHHHH-------Hh--hcCCCe
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMC-NNIQKGKKKTFIIASN-CHPQTIDICI-------TR--ADGFDI 281 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a-~~~~~~~g~~Vlv~~~-~H~s~~~~~~-------~~--a~~~gi 281 (985)
..++++.++++++ ...++.+++|||.++++++.+ +.+. ++++||+.+. .|......+. .+ -...|+
T Consensus 98 ~~~l~~~la~~~~-~~~~v~~~~sgseA~~~al~~ar~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~ 174 (434)
T 2epj_A 98 EVLLAEKILGYVK-RGGMIRFVNSGTEATMTAIRLARGYT--GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGV 174 (434)
T ss_dssp HHHHHHHHHHHHC-TTCEEEEESSHHHHHHHHHHHHHHHH--CCCEEEEEETCCCCSSGGGSEECC------CEESSTTC
T ss_pred HHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhh--CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCC
Confidence 4456788888884 345688999999888877754 2244 5677776664 4442221110 00 001232
Q ss_pred ------EEEEe---Cchhhhc-cC---CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecCccccCC-C
Q 001989 282 ------KVVVS---DLKDIDY-KS---GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLALTIL-K 342 (985)
Q Consensus 282 ------~v~~v---~~~~l~~-l~---~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~~lg~l-~ 342 (985)
.+..+ |+++|++ +. +++++|++... +.+|.+.| +++|.++|+++|+++++| +..+ |+. .
T Consensus 175 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~D-Ev~~-g~~~g 252 (434)
T 2epj_A 175 PEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILD-EVVT-GFRLG 252 (434)
T ss_dssp CHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEE-ETTT-TTTSS
T ss_pred CCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEE-cchh-ceeCC
Confidence 13333 4566766 54 46777776543 45899888 999999999999999995 3333 221 1
Q ss_pred CCC---cc--cceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccC
Q 001989 343 PPG---EL--GADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKAT 417 (985)
Q Consensus 343 ~~~---~~--GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~at 417 (985)
... .+ ..|+++. +|.|++ |-| +|++++++++++.+... +.. + ..+|
T Consensus 253 ~~~~~~~~~~~~di~s~-sK~l~~----G~~-~G~v~~~~~~~~~l~~~---------~~~-~-------------~~~t 303 (434)
T 2epj_A 253 LEGAQGYFNIEGDIIVL-GKIIGG----GFP-VGAVAGSREVMSLLTPQ---------GKV-F-------------NAGT 303 (434)
T ss_dssp TTHHHHHHTCCCSEEEE-EGGGGT----TSS-CEEEEECHHHHTTBTTT---------SSB-C-------------CCCT
T ss_pred cchhhHHhCCCCCeeee-cchhcC----Ccc-eeeeeecHHHHHhhccC---------CCc-c-------------cCCC
Confidence 111 12 3687533 388862 223 68888998887765210 000 0 0112
Q ss_pred CCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeE--EcCCCCcceEEEec-C-------
Q 001989 418 SNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVE--VQGLPFFDTVKVKC-A------- 483 (985)
Q Consensus 418 sni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~--~~~~~~~~~~~~~~-~------- 483 (985)
.+. ++....+..+++ ..+.. +++.++..++.+++++.|+++ + +. +.+...+-.+.+.. +
T Consensus 304 ~~~-~~~~~aa~~a~l--~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~ 376 (434)
T 2epj_A 304 FNA-HPITMAAGLATL--KALEE---EPVYSVSREAAKALEEAASEVLDRTG-LPYTINRVESMMQLFIGVEEVSNAAQA 376 (434)
T ss_dssp TTT-CHHHHHHHHHHH--HHHHH---SCHHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEEETTEEEEEETCSCCSSHHHH
T ss_pred CCc-CHHHHHHHHHHH--HHHHh---cCHHHHHHHHHHHHHHHHHHHHhhCC-CcEEEEEeeeEEEEEEeCCCcccchhc
Confidence 111 111222222222 33322 245667777888888888764 4 32 11111121222221 0
Q ss_pred ---C---HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 484 ---D---AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 484 ---~---~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
. ..++.+.|.++||.+....... +.+...+|++|+|+++++|.+
T Consensus 377 ~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~--~~~~~~~t~e~i~~~l~~l~~ 426 (434)
T 2epj_A 377 RKADKKFYVKLHEEMLRRGVFIAPSNLEA--VFTGLPHQGEALEIAVEGLRS 426 (434)
T ss_dssp TTSCHHHHHHHHHHHHHTTEECCSSTTSC--EECCTTCSHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHCCeEEeccCCCc--EEEeccCCHHHHHHHHHHHHH
Confidence 1 5678899999999886543333 445678999999999999974
No 458
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.18 E-value=4.1e-10 Score=129.86 Aligned_cols=260 Identities=12% Similarity=0.074 Sum_probs=154.2
Q ss_pred CCCCEEEEcCCCCcccHHHHHHCCcE-EEEEcC-C-CCCCCCHHHHHHHHHhcCCCEEEEEEEcC-CCccccc--cCHHH
Q 001989 678 HHRNVCIIPVSAHGTNPATAAMCGMK-IVSVGT-D-AKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDE 751 (985)
Q Consensus 678 ~~~~~IIv~~~~Hg~~~~~a~~~G~~-vv~v~~-d-~~g~iD~e~L~~~i~~~~~~t~~Vvv~~p-n~~G~i~--~di~e 751 (985)
+++|+|+++++.++.|....+..|++ |...+. + .++.+|.+.+.+.+....++++++++..| |++|... .++++
T Consensus 135 ~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~ 214 (420)
T 4h51_A 135 AETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNE 214 (420)
T ss_dssp TTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHH
T ss_pred CCCCEEEEecCCchhHHHHHHHcCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHH
Confidence 47899999999998888888899987 444444 2 23678999999988766677888888778 6899985 36899
Q ss_pred HHHHHHHcCCEEEEEccccc-cccCCC-CC------CccC-CcEEEeCCcccccccCCCCCCceEEEEEcccccCcCC--
Q 001989 752 ICKIIHDNGGQVYMDGANMN-AQVGLT-SP------GYIG-ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP-- 820 (985)
Q Consensus 752 I~~la~~~galliVD~a~~~-~~~~l~-~p------g~~g-~Di~~~s~hK~l~~p~g~GGPg~G~i~~~~~l~~~lp-- 820 (985)
|+++|++++++++.|.++.. ..+... .+ .+.+ .=+++.|+.|+|+++ |+++|++++.........
T Consensus 215 i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~----G~RvG~~~~~~~~~~~~~~~ 290 (420)
T 4h51_A 215 IASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLY----SERAGTLSLLLKDKTKRADV 290 (420)
T ss_dssp HHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCG----GGCEEEEEEECSCHHHHHHH
T ss_pred HHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccc----cCceEEEEecccCHHHHHHH
Confidence 99999999999999988731 111110 00 0111 235677888988764 789999987644322110
Q ss_pred -CCccccCCCCCCCCCCCCCCCCCCcchhhhHHHHHHH--HHHHHhcHHHHHHHHHHHHHHHHHHHHHhhc-cCCee---
Q 001989 821 -SHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISY--TYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPIL--- 893 (985)
Q Consensus 821 -~~~~g~~~~~~~~~~~~~~~~i~s~~~g~~~~~~~a~--a~l~~lg~eGl~~~~~~~~~~a~~l~~~L~~-g~~l~--- 893 (985)
...... .....++.+ ..|+.... ..+ ..+...-.+-++.+.++..++++.|.+.|++ +....
T Consensus 291 ~~~l~~~--------~r~~~s~~p--~~~a~~~~-~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~ 359 (420)
T 4h51_A 291 KSVMDSL--------IREEYTCPP--AHGARLAH-LILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEH 359 (420)
T ss_dssp HHHHHHH--------HHTTTSSCC--HHHHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTH
T ss_pred HHHHHHh--------hhcccCcch--HHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCe
Confidence 000000 000111221 11221110 000 0111111223455566677888889999976 32211
Q ss_pred ecCCCCceeeEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHHHHHHHccCChhHHHHh
Q 001989 894 FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKSWTGIVMLSSPSEKKLHR 973 (985)
Q Consensus 894 ~~~~~~~~~~~~iv~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~~p~~~~lris~t~~~t~eeId~~~~~~~l~~~~~~ 973 (985)
+....| .| . +. |.+.+. ++.|.++||++.. + -|||+.- .+.+.|++ ++++|.+++.+
T Consensus 360 i~~q~G-mF---~--~~------gls~e~-v~~L~e~~Vy~~~------~-gRis~Ag-l~~~ni~~--~a~aI~~vvr~ 416 (420)
T 4h51_A 360 VINQIG-MF---S--FL------GLSKAQ-CEYCQNHNIFITV------S-GRANMAG-LTHETALM--LAQTINDAVRN 416 (420)
T ss_dssp HHHCCS-SE---E--EC------CCCHHH-HHHHHHTTEECCT------T-CEEEGGG-CCHHHHHH--HHHHHHHHHC-
T ss_pred ecCCCc-eE---E--ec------CcCHHH-HHHHHhCCEEEcC------C-CEEEecc-CCHHHHHH--HHHHHHHHHHH
Confidence 111112 22 1 21 455554 5789999987531 2 2888753 57889999 88888888876
Q ss_pred hc
Q 001989 974 LK 975 (985)
Q Consensus 974 ~~ 975 (985)
++
T Consensus 417 i~ 418 (420)
T 4h51_A 417 VN 418 (420)
T ss_dssp --
T ss_pred hh
Confidence 54
No 459
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.16 E-value=1e-09 Score=127.26 Aligned_cols=274 Identities=15% Similarity=0.176 Sum_probs=156.0
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHH-hhhhcCCCCEEEEcCCC-ChhHHHHHHHhh---------cCCCe-
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMC-NNIQKGKKKTFIIASNC-HPQTIDICITRA---------DGFDI- 281 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a-~~~~~~~g~~Vlv~~~~-H~s~~~~~~~~a---------~~~gi- 281 (985)
.++.+.++++++ +...+.+++|||.++++++.+ +... ++++||+.+.. |......+.... ...++
T Consensus 98 ~~l~~~la~~~~-~~~~v~~~~sGsea~~~ai~~a~~~~--~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~ 174 (434)
T 3l44_A 98 VKFAKMLKEAMP-ALDKVRFVNSGTEAVMTTIRVARAYT--GRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVP 174 (434)
T ss_dssp HHHHHHHHHHCT-TCSEEEEESSHHHHHHHHHHHHHHHH--CCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCC
T ss_pred HHHHHHHHHhCC-CCCEEEEeCchHHHHHHHHHHHHHhh--CCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCC
Confidence 356678889886 566788999999888877743 3333 67888886654 443322211000 00011
Q ss_pred -----EEEEe---Cchhhhc-cC---CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecCccccC-CCC
Q 001989 282 -----KVVVS---DLKDIDY-KS---GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLALTI-LKP 343 (985)
Q Consensus 282 -----~v~~v---~~~~l~~-l~---~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~~lg~-l~~ 343 (985)
.+..+ |+++|++ +. +++++|++..+ +..|.+.+ +++|.++|+++|+++++| +... |+ ...
T Consensus 175 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~D-Ev~~-g~~~g~ 252 (434)
T 3l44_A 175 QSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYD-EVIT-AFRFMY 252 (434)
T ss_dssp HHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEE-CTTT-TTTSSS
T ss_pred CcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEe-cccc-ceeccc
Confidence 23333 3456665 53 56777777654 46788887 999999999999999995 3322 11 111
Q ss_pred C---Cccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCC
Q 001989 344 P---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATS 418 (985)
Q Consensus 344 ~---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~ats 418 (985)
. ..+| .|+++. +|.|+ ||-.+|++.+++++++.+.. ..+ + ...+|.
T Consensus 253 ~~~~~~~~~~~di~t~-sK~~~-----~G~~iG~~~~~~~i~~~~~~----------~~~-~------------~~~~t~ 303 (434)
T 3l44_A 253 GGAQDLLGVTPDLTAL-GKVIG-----GGLPIGAYGGKKEIMEQVAP----------LGP-A------------YQAGTM 303 (434)
T ss_dssp SCHHHHHTCCCSEEEE-EGGGG-----TTSSCEEEEECHHHHTTBTT----------TSS-B------------CCCCTT
T ss_pred cHHHHHcCCCCCeeeh-hhhhc-----CCcCeeeEEEcHHHHHhhcc----------CCC-c------------ccCCCC
Confidence 1 1123 466543 48885 23456788889988876521 000 0 011222
Q ss_pred CccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEc-CCCCcceEEEec-----------
Q 001989 419 NICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQ-GLPFFDTVKVKC----------- 482 (985)
Q Consensus 419 ni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~-~~~~~~~~~~~~----------- 482 (985)
+.. +.+..+..++ +..+.. +++.++..++.+++++.|+++ +.+... ....+-.+.+..
T Consensus 304 ~~~-~~a~aaa~aa--l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (434)
T 3l44_A 304 AGN-PASMASGIAC--LEVLQQ---EGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQD 377 (434)
T ss_dssp TTC-HHHHHHHHHH--HHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHH
T ss_pred CcC-HHHHHHHHHH--HHHHHc---ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccc
Confidence 221 1112222222 233333 345566667777777777653 311111 111111222211
Q ss_pred CC---HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 483 AD---AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 ~~---~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++ ..++.+.|.++||.++....+.+|++ ..+|++|+|+++++|++
T Consensus 378 ~~~~~~~~~~~~l~~~Gv~v~~~~~~~~rl~--~~~t~e~i~~~l~~l~~ 425 (434)
T 3l44_A 378 TDGEMFGKFFKLMLQEGVNLAPSKYEAWFLT--TEHTKEDIEYTIEAVGR 425 (434)
T ss_dssp SCHHHHHHHHHHHHHTTEECCSSTTCCEECC--TTCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCeEEeecCCCcEEEe--cccCHHHHHHHHHHHHH
Confidence 12 46788999999999876545667774 57899999999999974
No 460
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.15 E-value=1.1e-09 Score=127.00 Aligned_cols=269 Identities=14% Similarity=0.139 Sum_probs=157.2
Q ss_pred HHHHHHHHHhcCCCCcceeeccchHHHHHHHHHH-hhhhcCCCCEEEEcC-CCChhHHHHHHHh---------hcCCCe-
Q 001989 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMC-NNIQKGKKKTFIIAS-NCHPQTIDICITR---------ADGFDI- 281 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a-~~~~~~~g~~Vlv~~-~~H~s~~~~~~~~---------a~~~gi- 281 (985)
.++.+.++++++ +...+.+++|||.++++++.+ +... ++++||+.+ ..|......+... -...++
T Consensus 96 ~~l~~~la~~~~-~~~~v~~~~~Gsea~~~ai~~a~~~~--~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~ 172 (429)
T 3k28_A 96 NKLAKLVIERVP-SIEIVRMVNSGTEATMSALRLARGYT--GRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVP 172 (429)
T ss_dssp HHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHH--TCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCC
T ss_pred HHHHHHHHHhCC-CCCEEEEeCChHHHHHHHHHHHHHhh--CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCC
Confidence 356678888886 456788899999888877743 3333 567777654 5554443322100 000111
Q ss_pred -----EEEEe---Cchhhhc-cC---CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecCccccCCCCC
Q 001989 282 -----KVVVS---DLKDIDY-KS---GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLALTILKPP 344 (985)
Q Consensus 282 -----~v~~v---~~~~l~~-l~---~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~~~~lg~l~~~ 344 (985)
.+..+ |+++|++ +. +++++|++..+ +..|.+.+ +++|.++|+++|+++++| +.+. |+ ..
T Consensus 173 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D-Ev~~-g~--~~ 248 (429)
T 3k28_A 173 EGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFD-EVMT-GF--RV 248 (429)
T ss_dssp HHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEE-CTTT-TT--TS
T ss_pred CcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEe-cccc-cc--cc
Confidence 22223 4456665 43 56777777654 56788888 999999999999999995 3332 22 11
Q ss_pred Cc------cc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccccccccccccc
Q 001989 345 GE------LG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKA 416 (985)
Q Consensus 345 ~~------~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~a 416 (985)
+. +| .|+++. +|+|++ |-.+|++.+++++++.+... .+ + ...+
T Consensus 249 g~~~~~~~~~~~~di~t~-sK~~~~-----G~~iG~~~~~~~~~~~~~~~----------~~-~------------~~~~ 299 (429)
T 3k28_A 249 AYNCGQGYYGVTPDLTCL-GKVIGG-----GLPVGAYGGKAEIMRQVAPS----------GP-I------------YQAG 299 (429)
T ss_dssp STTHHHHHHTCCCSEEEE-CGGGGT-----TSCCEEEEECHHHHTTBTTT----------SS-B------------CCCC
T ss_pred CcchHHHHhCCCCceehh-hhhhcC-----CCCeEEEEEcHHHHhhhccC----------CC-c------------cccC
Confidence 21 23 566543 488852 34568899999888765210 00 0 0011
Q ss_pred CCCccchhHHHHHHHHHH-HHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeEEcCCCCcceEEEec---------
Q 001989 417 TSNICTAQALLANMAAMY-AVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQGLPFFDTVKVKC--------- 482 (985)
Q Consensus 417 tsni~t~~~l~a~~aa~~-l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~~~~~~~~--------- 482 (985)
|.+. .++ +..+++. +..+ + +++.++..++.+++++.|+++ +.+..+. ....-+.+.+
T Consensus 300 t~~~---~~~-a~aaa~aal~~~--~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~ 370 (429)
T 3k28_A 300 TLSG---NPL-AMAAGYETLVQL--T--PESYVEFERKAEMLEAGLRKAAEKHGIPHHIN-RAGSMIGIFFTDEPVINYD 370 (429)
T ss_dssp TTTT---CHH-HHHHHHHHHHTC--C--HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEE-EETTEEEEESSSSCCCSHH
T ss_pred CCCC---ChH-HHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEE-eeccEEEEEEecCCccccc
Confidence 2211 111 2222221 2222 2 677788888888888888764 2111110 0011122221
Q ss_pred ----CC---HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 483 ----AD---AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 ----~~---~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++ ..++.+.|.++||.++....+.+|++ ..+|++|+|+++++|.+
T Consensus 371 ~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~r~~--~~~t~e~i~~~l~~l~~ 422 (429)
T 3k28_A 371 AAKSSNLQFFAAYYREMVEQGVFLPPSQFEGLFLS--TVHSDADIEATIAAAEI 422 (429)
T ss_dssp HHTTSCHHHHHHHHHHHHHTTEECCSSTTSCBCCC--TTCCHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHCCeEEecCCCCCEEEE--CCCCHHHHHHHHHHHHH
Confidence 12 47888999999998876444667774 57899999999999874
No 461
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.14 E-value=5.7e-10 Score=129.03 Aligned_cols=271 Identities=13% Similarity=0.141 Sum_probs=155.2
Q ss_pred HHHHHHHHHHhcCCCCcceeeccchHHHHHHHHH-HhhhhcCCCCEEEEcCCC-ChhHHHHHHHh-h--------cCCCe
Q 001989 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAM-CNNIQKGKKKTFIIASNC-HPQTIDICITR-A--------DGFDI 281 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~-a~~~~~~~g~~Vlv~~~~-H~s~~~~~~~~-a--------~~~gi 281 (985)
..++.+.++++++ +..++.+++||+.++++++. |+.+. ++++||+.+.. |......+... . ...|+
T Consensus 94 ~~~l~~~l~~~~~-~~~~v~~~~~g~ea~~~al~~ar~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~ 170 (424)
T 2e7u_A 94 EVALAKKVKRAYP-FVDLVRFVNSGTEATMSALRLARGYT--GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGV 170 (424)
T ss_dssp HHHHHHHHHHHCT-TCCEEEEESSHHHHHHHHHHHHHHHH--CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTC
T ss_pred HHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhh--CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCC
Confidence 3456678889885 55678889999988887765 33344 45777766654 44222221000 0 01232
Q ss_pred ------EEEEe---Cchhhhc-cC---CCEeEEEEEcCC-CCeeecc----HHHHHHHHHhCCcEEEEEecCccccCC-C
Q 001989 282 ------KVVVS---DLKDIDY-KS---GDVCGVLVQYPG-TEGEVLD----YGDFIKNAHANGVKVVMATDLLALTIL-K 342 (985)
Q Consensus 282 ------~v~~v---~~~~l~~-l~---~~t~~V~v~~pn-~~G~v~d----i~~I~~~a~~~galliV~a~~~~lg~l-~ 342 (985)
.+..+ |+++|++ +. +++++|++...+ .+|.+.+ +++|.++ +++|+++++| +.++ |+. .
T Consensus 171 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~D-Ev~~-g~~~g 247 (424)
T 2e7u_A 171 PEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIAD-EVMT-GFRLA 247 (424)
T ss_dssp CHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEE-CTTT-TTTSS
T ss_pred CCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEe-cCcc-ccccc
Confidence 23333 4566666 54 467766664322 3898887 9999999 9999999994 3444 321 1
Q ss_pred CC---Cccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccC
Q 001989 343 PP---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKAT 417 (985)
Q Consensus 343 ~~---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~at 417 (985)
.. ..+| .|+++. +|+|++ |-.+|++++++++++.+... +.. + ..+|
T Consensus 248 ~~~~~~~~~~~~di~s~-sK~l~~-----G~~~G~~~~~~~~~~~~~~~---------~~~-~-------------~~~t 298 (424)
T 2e7u_A 248 FGGATELLGLKPDLVTL-GKILGG-----GLPAAAYAGRREIMEKVAPL---------GPV-Y-------------QAGT 298 (424)
T ss_dssp TTHHHHHHTCCCSEEEE-CGGGGT-----TSSCEEEEECHHHHTTBTTT---------SSB-C-------------CCCT
T ss_pred hhHHHHHhCCCcchhhh-hhhhhC-----CcceEEEEEcHHHHhhhccc---------CCc-c-------------cCCC
Confidence 11 1223 577633 488862 22368888999888765210 000 0 0111
Q ss_pred CCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CCeE--EcCCCCcceEEEecCC-------
Q 001989 418 SNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVE--VQGLPFFDTVKVKCAD------- 484 (985)
Q Consensus 418 sni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~--~~~~~~~~~~~~~~~~------- 484 (985)
.+. ++.+..+..+++ ..+.. .+++.++..++.++++++|+++ | +. +.+.. .-+.+.++.
T Consensus 299 ~~~-~~~~~aaa~aal--~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g--~~~~i~~~~~~~~~~~ 370 (424)
T 2e7u_A 299 LSG-NPLAMAAGLATL--ELLEE--NPGYYAYLEDLGARLEAGLKEVLKEKG-LPHTVNRVG--SMITVFFTEGPVVTFQ 370 (424)
T ss_dssp TCS-CHHHHHHHHHHH--HHHHH--CTHHHHHHHHHHHHHHHHHHHHHHHTT-CCCEEEEET--TEEEEESSSSCCCSHH
T ss_pred CCC-CHHHHHHHHHHH--HHHHh--ccHHHHHHHHHHHHHHHHHHHHHHhCC-CceEEEeec--eEEEEEEeCCCCcchh
Confidence 111 111122222222 33211 1456777888888888888764 4 31 11111 123333321
Q ss_pred ---------HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001989 485 ---------AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 485 ---------~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~ 528 (985)
..++.+.|.++||.+.......+ .+...+|++|+++++++|.
T Consensus 371 ~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~--~~~~~~t~~~i~~~l~~l~ 421 (424)
T 2e7u_A 371 DARRTDTELFKRFFHGLLDRGIYWPPSNFEAA--FLSVAHREEDVEKTLEALR 421 (424)
T ss_dssp HHTTSCHHHHHHHHHHHHTTTEECCSSSSSCE--ECCTTCCHHHHHHHHHHHH
T ss_pred hhcccCHHHHHHHHHHHHHCCeEEeccCCCce--EeeccCCHHHHHHHHHHHH
Confidence 45788999999998865433344 4557899999999999986
No 462
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.12 E-value=2e-09 Score=124.71 Aligned_cols=268 Identities=12% Similarity=0.044 Sum_probs=165.3
Q ss_pred HHHHHHHHHhcC------CCCcceeeccchHHHHHHHHHHhh-------hhcCCCCEEEEcCCCChhHHHHHHHhhcCCC
Q 001989 214 LNFQTMIADLTG------LPMSNASLLDEGTAAAEAMAMCNN-------IQKGKKKTFIIASNCHPQTIDICITRADGFD 280 (985)
Q Consensus 214 ~e~q~~ia~L~g------~~~~~~sl~~~~ta~~ea~~~a~~-------~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~g 280 (985)
.++++.+|++++ .++.++.++.|++.++..++.++. . ++||+|+++.-.|+.+...++.. |
T Consensus 103 ~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~--~~Gd~Vlv~~P~y~~~~~~~~~~----g 176 (427)
T 2hox_A 103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPD--APESKVVAHAPFYPVFREQTKYF----D 176 (427)
T ss_dssp HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTT--SCCEEEEECSSCCHHHHHHHHHS----C
T ss_pred HHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccC--CCCCEEEEeCCCcccHHHHHHHc----C
Confidence 346667777775 567789999999988887776652 2 38899999999999999887642 4
Q ss_pred eEEE--EeCchhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecCccccCCCCCC--cccceEEEe
Q 001989 281 IKVV--VSDLKDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPG--ELGADIVVG 354 (985)
Q Consensus 281 i~v~--~v~~~~l~~-l~~~t~~V~v~~p-n~~G~v~di~~I~~~a~~~galliV~a~~~~lg~l~~~~--~~GaDi~v~ 354 (985)
.+++ .+++++|++ +++++++|++++| |.+|.+.+ + + ++ +...+++ +... .-..+.. ..+.||+++
T Consensus 177 ~~~~~~~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~-~-~---l~--~~~~i~d-~~~~-~~~~s~~~~~~~~~i~~~ 247 (427)
T 2hox_A 177 KKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-A-V---IK--GCKSIYD-MVYY-WPHYTPIKYKADEDILLF 247 (427)
T ss_dssp BTTEEEEEEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-C-S---ST--TCEEEEE-CTTC-STTTSCCCSCBCCSEEEE
T ss_pred CeeeeecCCHHHHHHhhcCCceEEEEcCCCCCcccccH-H-H---Hc--CCCEEEe-eccc-CCCCCccccCCCceEEEE
Confidence 3332 346678887 7778999999998 78999988 3 2 33 4555553 2211 1001111 257899999
Q ss_pred cC-ccccccCCCCCCcEEEEEEc-hhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHH
Q 001989 355 SA-QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 355 s~-k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa 432 (985)
|. |.++.| |--+|+++++ +++++++.. + +...+.++.+ ....+..++
T Consensus 248 S~SK~~g~~----G~RiG~~~~~~~~l~~~l~~--------------~------------~~~~~~~~~~-~~q~a~~~~ 296 (427)
T 2hox_A 248 TMSKFTGHS----GSRFGWALIKDESVYNNLLN--------------Y------------MTKNTEGTPR-ETQLRSLKV 296 (427)
T ss_dssp EHHHHTSCG----GGCCEEEEECCHHHHHHHHH--------------H------------HHHHTSSCCH-HHHHHHHHH
T ss_pred eChhcCCCC----CceEEEEEECCHHHHHHHHH--------------H------------HHhcCCCCCH-HHHHHHHHH
Confidence 98 876532 1226999994 777665410 0 0001111111 111122222
Q ss_pred HH--HHHh------CcchHHHHHHHHHHHHHHHHHHHhcCCCeEE--cC-C----------CCcce-EEEecCC-HHHHH
Q 001989 433 MY--AVYH------GPEGLKTIAQRVHGLAGTFALGLKKLGTVEV--QG-L----------PFFDT-VKVKCAD-AHAIA 489 (985)
Q Consensus 433 ~~--l~~~------g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~--~~-~----------~~~~~-~~~~~~~-~~~v~ 489 (985)
+- ..++ ..+=+++..++..++.+++.+.|+++.|+++ +. + +...- +.++++. ..++.
T Consensus 297 L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~~~~~~ 376 (427)
T 2hox_A 297 LKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDC 376 (427)
T ss_dssp HHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSH
T ss_pred hhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCCcHHHHH
Confidence 20 1111 1223456677788889999999999833876 21 1 11111 2345553 45566
Q ss_pred HHHH-HcCceeeee-----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 490 SAAY-KIEMNLRVV-----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 490 ~~L~-~~GI~~~~~-----~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.|. ++||.+... .++.+|+|+. +++++|+++++.|..
T Consensus 377 ~~ll~~~gI~v~pg~~f~~~~~~~Ris~~--~~~e~l~~~l~~l~~ 420 (427)
T 2hox_A 377 YQTFQNGRINTQNGVGFEASSRYVRLSLI--KTQDDFDQLMYYLKD 420 (427)
T ss_dssp HHHHHHTTEECEEGGGGTSCTTEEEEECS--SCHHHHHHHHHHHHH
T ss_pred HHHHHHCCEEEcCCCccCCCCCEEEEEec--CCHHHHHHHHHHHHH
Confidence 6664 789987542 2578999998 488999998888863
No 463
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.09 E-value=3.2e-09 Score=123.17 Aligned_cols=271 Identities=14% Similarity=0.186 Sum_probs=152.0
Q ss_pred HHHHHHHHhcCCCCcceeeccchHHHHHHHH-HHhhhhcCCCCEEEEcC-CCChhHHHHHH-HhhcCCCeEEEEeCch--
Q 001989 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMA-MCNNIQKGKKKTFIIAS-NCHPQTIDICI-TRADGFDIKVVVSDLK-- 289 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~-~a~~~~~~~g~~Vlv~~-~~H~s~~~~~~-~~a~~~gi~v~~v~~~-- 289 (985)
++.+.+++++.- ...+.+.++||.+.|+++ +|+.++ .+++||.-+ +-|........ .-..........++..
T Consensus 131 ~lae~l~~~~p~-~~~v~f~~SGsEA~e~AiklAr~~t--gr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~nd~ 207 (454)
T 4ao9_A 131 RLARLICERFPQ-IEQLRFTNSGTEANLMALTAALHFT--GRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYNDA 207 (454)
T ss_dssp HHHHHHHHHSTT-CSEEEEESSHHHHHHHHHHHHHHHH--TCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTTCH
T ss_pred HHHHHHHHhCCC-CCEEEEeCchHHHHHHHHHHHHhcc--cCCeEEEEeCCcCCccccccccccCccCCCCcccCCCchH
Confidence 345678887742 234777889998888777 566565 567877655 55543322110 0001112344445543
Q ss_pred -hhhc-c---CCCEeEEEEEc-CCCCeeecc----HHHHHHHHHhCCcEEEEEecCccccCCCCCC---ccc--ceEEEe
Q 001989 290 -DIDY-K---SGDVCGVLVQY-PGTEGEVLD----YGDFIKNAHANGVKVVMATDLLALTILKPPG---ELG--ADIVVG 354 (985)
Q Consensus 290 -~l~~-l---~~~t~~V~v~~-pn~~G~v~d----i~~I~~~a~~~galliV~a~~~~lg~l~~~~---~~G--aDi~v~ 354 (985)
++++ + .+++++|++.- .+..|.+.+ +++|.++|+++|++||+| +.+. |-...-+ .+| .|+++
T Consensus 208 ~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~D-EV~t-GR~G~~~a~e~~gv~PDi~t- 284 (454)
T 4ao9_A 208 QTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFD-EVMT-SRLAPHGLANKLGIRSDLTT- 284 (454)
T ss_dssp HHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEE-CTTG-GGGSTTCHHHHHTCCCSEEE-
T ss_pred HHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEE-CCCc-CCCccccchhccCCCCcEEE-
Confidence 3444 3 46788888753 266788876 999999999999999994 4443 4221111 233 38864
Q ss_pred cCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHH-
Q 001989 355 SAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM- 433 (985)
Q Consensus 355 s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~- 433 (985)
-+|.+++ |.| +|.+.+++++++.+.+.. +. +. ..+|-+ . .++ +.+|++
T Consensus 285 ~gK~lgg----G~P-iga~~~~~ei~~~~~~~~--------~~--~~------------h~~T~~--g-nPl-a~AAala 333 (454)
T 4ao9_A 285 LGKYIGG----GMS-FGAFGGRADVMALFDPRT--------GP--LA------------HSGTFN--N-NVM-TMAAGYA 333 (454)
T ss_dssp EEGGGGT----TSS-CEEEEECHHHHGGGCTTT--------CS--CC------------CCCTTT--T-CHH-HHHHHHH
T ss_pred eccccCC----CCc-ceeeeeHHHHHHHHhhcc--------CC--cc------------ccCCCC--C-CHH-HHHHHHH
Confidence 3477753 445 456678888887663210 10 00 112211 1 122 222222
Q ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----CC-eEEcCCCCcceEEEe-----------cCC---HHHHHHHHHH
Q 001989 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GT-VEVQGLPFFDTVKVK-----------CAD---AHAIASAAYK 494 (985)
Q Consensus 434 ~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~-~~~~~~~~~~~~~~~-----------~~~---~~~v~~~L~~ 494 (985)
-+..+.. +++.++..++.++|+++|+++ +- .++.+...+-.+-|. ..+ ...+...|.+
T Consensus 334 ~L~~l~~---~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~ 410 (454)
T 4ao9_A 334 GLTKLFT---PEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLN 410 (454)
T ss_dssp HHHHTSC---HHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhc---cChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHH
Confidence 2355544 356677778888888888764 20 011100000001110 001 3567778889
Q ss_pred cCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 495 IEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 495 ~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+||++.+ .+.+ .+...+|++|||+++++|++
T Consensus 411 ~Gv~~~p--~~~~--~~s~~~T~~dId~~l~al~~ 441 (454)
T 4ao9_A 411 EDIYSSP--RGFV--VLSLPLTDADIDRYVAAIGS 441 (454)
T ss_dssp TTEECCT--TCEE--ECCTTCCHHHHHHHHHHHHH
T ss_pred CCEEEcC--CCCE--EEeCCCCHHHHHHHHHHHHH
Confidence 9998864 2333 34556899999999999985
No 464
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.07 E-value=3.4e-09 Score=124.46 Aligned_cols=267 Identities=13% Similarity=0.117 Sum_probs=154.9
Q ss_pred HHHHHhcCCCCcceeeccchHHHHHHHHH-Hhhhh----cC-----------------C---CCEEEEcC-CCChhHHHH
Q 001989 218 TMIADLTGLPMSNASLLDEGTAAAEAMAM-CNNIQ----KG-----------------K---KKTFIIAS-NCHPQTIDI 271 (985)
Q Consensus 218 ~~ia~L~g~~~~~~sl~~~~ta~~ea~~~-a~~~~----~~-----------------~---g~~Vlv~~-~~H~s~~~~ 271 (985)
+.++++++.+...+.++++||.+.++++. ++.+. ++ + +++||+.+ ..|......
T Consensus 117 ~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~ 196 (472)
T 1ohv_A 117 ESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGC 196 (472)
T ss_dssp HTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHH
T ss_pred HHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHH
Confidence 34555664445568889999999998884 43221 11 2 37888766 566655555
Q ss_pred HHHhhc----CCCeE-----EEEe--------------------Cchhhhc-cCC------CEeEEEEEc-CCCCeeecc
Q 001989 272 CITRAD----GFDIK-----VVVS--------------------DLKDIDY-KSG------DVCGVLVQY-PGTEGEVLD 314 (985)
Q Consensus 272 ~~~~a~----~~gi~-----v~~v--------------------~~~~l~~-l~~------~t~~V~v~~-pn~~G~v~d 314 (985)
+..-.. ..+.. ...+ ++++|++ +++ ++++|++.. +|..|.+.+
T Consensus 197 ~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~ 276 (472)
T 1ohv_A 197 LATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHA 276 (472)
T ss_dssp HHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCC
T ss_pred HhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCC
Confidence 422100 01111 1111 2345555 544 799888865 477999887
Q ss_pred ----HHHHHHHHHhCCcEEEEEecCcc-ccCCCC---CCccc----ceEEEecCccccccCCCCCCcEEEEEEchhhHhc
Q 001989 315 ----YGDFIKNAHANGVKVVMATDLLA-LTILKP---PGELG----ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRM 382 (985)
Q Consensus 315 ----i~~I~~~a~~~galliV~a~~~~-lg~l~~---~~~~G----aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~ 382 (985)
+++|.++|+++|+++++| +..+ +|.... ...+| .|+++.+ |.+ +|| |++. ++++. .
T Consensus 277 ~~~~l~~l~~l~~~~g~lli~D-Ev~~g~g~~g~~~~~~~~gv~~~~Di~t~s-K~~-----l~G---G~~~-~~~~~-~ 344 (472)
T 1ohv_A 277 SDDFFRKLRDISRKHGCAFLVD-EVQTGGGSTGKFWAHEHWGLDDPADVMTFS-KKM-----MTG---GFFH-KEEFR-P 344 (472)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEE-CTTTTTTTTSSSSGGGGGCCSSCCSEEEEC-GGG-----SSE---EEEE-CGGGS-C
T ss_pred CHHHHHHHHHHHHHhCCEEEEe-CcccCCCCCCCchhccccCCCCCCCEEEEc-ccc-----ccC---CccC-chhhc-c
Confidence 999999999999999995 3333 442211 12356 6876543 763 122 5654 54431 1
Q ss_pred CCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHh
Q 001989 383 MPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLK 462 (985)
Q Consensus 383 lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~ 462 (985)
+. + + ...+|.+. .+.+..+..+++ ..+..+ ++.++..++.++|+++|+
T Consensus 345 ~~-------------~-~------------~~~~T~~~-~~~~~aaa~aal--~~~~~~---~~~~~~~~~~~~l~~~L~ 392 (472)
T 1ohv_A 345 NA-------------P-Y------------RIFNTWLG-DPSKNLLLAEVI--NIIKRE---DLLSNAAHAGKVLLTGLL 392 (472)
T ss_dssp SS-------------S-S------------SSCCSSSS-CHHHHHHHHHHH--HHHHHT---THHHHHHHHHHHHHHHHH
T ss_pred cc-------------c-c------------cccCccCc-cHHHHHHHHHHH--HHHHhC---CHHHHHHHHHHHHHHHHH
Confidence 10 0 0 01122111 111222223333 333222 356777888888988887
Q ss_pred cC--C--C-eEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 463 KL--G--T-VEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 463 ~~--g--~-~~~~~~~~~~~~~~~~~~---~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++ + + +.-+. +...-+.+..++ +.++.++|.++||.+.....+.||++++..+|++|||+++++|.+
T Consensus 393 ~l~~~~~~~v~~~~-~~g~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~ 466 (472)
T 1ohv_A 393 DLQARYPQFISRVR-GRGTFCSFDTPDESIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSD 466 (472)
T ss_dssp HHHHHCTTTCEEEE-EETTEEEEECSSHHHHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHhhCCCcEEeec-CCceEEEEEeCChhHHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 65 1 0 11111 111123445543 678999999999988764457999999999999999999999874
No 465
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.06 E-value=1.7e-09 Score=122.31 Aligned_cols=285 Identities=11% Similarity=0.062 Sum_probs=167.9
Q ss_pred HHHHHHHhcCCCCc----ceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHH--------HHHH---h--hcC
Q 001989 216 FQTMIADLTGLPMS----NASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTID--------ICIT---R--ADG 278 (985)
Q Consensus 216 ~q~~ia~L~g~~~~----~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~--------~~~~---~--a~~ 278 (985)
+++...+|+|++.+ |+-.++|+ .+..|+.+|+. ++||+|+.-+..|..-+. .+.. + .-.
T Consensus 105 a~~rak~lF~a~~A~w~VNVQP~SGs-~AN~avy~All---~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~ 180 (490)
T 3ou5_A 105 CQRRALEAFDLDPAQWGVNVQPYSGS-PANLAVYTALL---QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMP 180 (490)
T ss_dssp HHHHHHHHTTCCTTTEEEECCCSSHH-HHHHHHHHHHC---C-CCCEECBC----------------------------C
T ss_pred HHHHHHHHhCCCccccCCCCCcCCHH-HHHHHHHHHHc---CCCCEEEecccCCCCcccccccCCCcccccccccccccc
Confidence 45678999999987 66555554 45566677762 399999988776633221 1100 0 001
Q ss_pred CCeEE--EEeCchhhhc--cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEE-ecCcc---ccCCCCCCcccce
Q 001989 279 FDIKV--VVSDLKDIDY--KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMA-TDLLA---LTILKPPGELGAD 350 (985)
Q Consensus 279 ~gi~v--~~v~~~~l~~--l~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~galliV~-a~~~~---lg~l~~~~~~GaD 350 (985)
+++.- -.+|+|++++ ..-+.+++++-.+.|. ...|++++.++|++.|+++++| +|..+ -|+..+|-.+ ||
T Consensus 181 Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G~SaY~-r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~-AD 258 (490)
T 3ou5_A 181 YKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA-RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-AD 258 (490)
T ss_dssp BCEETTTTEECHHHHHHHHHHHCCSEEEECCSSCC-SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT-CS
T ss_pred cccCCCCCcccHHHHHHHHhhcCCCeEEECCccCc-cccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCcccc-ce
Confidence 12111 1245566665 2234566666554443 4558999999999999999995 45433 3567778776 99
Q ss_pred EEEecC-ccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccc--cccCCCccchhHHH
Q 001989 351 IVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR--DKATSNICTAQALL 427 (985)
Q Consensus 351 i~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irr--e~atsni~t~~~l~ 427 (985)
||.++. |+|.+ |..|++.++++....-+. .++. ...++ ++.+.+ ..|..--+-+..+.
T Consensus 259 vVTtTTHKTLrG------PrGG~Il~~~~~~~~~~k---------~~~~-~~~~~---~kkin~aVFPg~qggp~~h~IA 319 (490)
T 3ou5_A 259 IVTTTTHKTLRG------ARSGLIFYRKGVKAVDPK---------TGRE-IPYTF---EDRINFAVFPSLQGGPHNHAIA 319 (490)
T ss_dssp EEEEESSSTTCS------CSCEEEEEECSEEEECC-----------CCE-EECCC---HHHHHHHHTTTTCSSCCHHHHH
T ss_pred EEeccccccccC------CCceEEEecccccccccc---------ccch-hHHHH---HHHHHhhcCccccccchHHHHH
Confidence 999999 88865 455899888754221110 0110 00001 111111 12222222223444
Q ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcC-CCCcceEEEecC--C--HHHHHHHHHHcCceeee-
Q 001989 428 ANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG-LPFFDTVKVKCA--D--AHAIASAAYKIEMNLRV- 501 (985)
Q Consensus 428 a~~aa~~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~--~--~~~v~~~L~~~GI~~~~- 501 (985)
|.+.++ ...+-+ ..++-+++..+||+.|++.|.+.| ++++. ...-+.+.++.. + ..+..+.|.+.||.+..
T Consensus 320 AkAVaf-~Ea~~p-~fk~Ya~qVv~NAkaLA~~L~~~G-~~vvsGgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN 396 (490)
T 3ou5_A 320 AVAVAL-KQACTP-MFREYSLQVLKNARAMADALLERG-YSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKN 396 (490)
T ss_dssp HHHHHH-HHHHSH-HHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEE
T ss_pred HHHHHH-HHHHhH-hHHHHHHHHHHHHHHHHHHHHhCC-CeeecCCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCC
Confidence 443333 222333 457889999999999999999998 99984 344445666653 2 67788888889997632
Q ss_pred --------ecCCeEEEEeccCCC----HHHHHHHHHHHh
Q 001989 502 --------VDSNTVTASFDETTT----LEDVDKLFIVFA 528 (985)
Q Consensus 502 --------~~~~~lris~t~~~t----~edId~li~aL~ 528 (985)
..++.||+...+.+| ++|++.+.+.+.
T Consensus 397 ~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~ 435 (490)
T 3ou5_A 397 TCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFID 435 (490)
T ss_dssp CCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHH
Confidence 235789999877554 577777766664
No 466
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=98.98 E-value=3.7e-08 Score=117.61 Aligned_cols=288 Identities=13% Similarity=0.061 Sum_probs=160.1
Q ss_pred CcceeeccchHHHHHHHHHHhh---hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----------hhhhc-
Q 001989 228 MSNASLLDEGTAAAEAMAMCNN---IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----------KDIDY- 293 (985)
Q Consensus 228 ~~~~sl~~~~ta~~ea~~~a~~---~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----------~~l~~- 293 (985)
+.++.+++|++.++..++.++. +. ++||+|++++-.|+.+..... ....|++++.++. ++|++
T Consensus 165 ~~~I~~t~G~~eal~~~~~~l~~~~l~-~~Gd~Vlv~~P~y~~~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 241 (546)
T 2zy4_A 165 SVNLFAVEGGTAAMAYIFESLKLNGLL-KAGDKVAIGMPVFTPYIEIPE--LAQYALEEVAINADPSLNWQYPDSELDKL 241 (546)
T ss_dssp GEEEEEEEHHHHHHHHHHHHHHHTTSS-CTTCEEEEEESCCHHHHHHHH--STTSCCEEEEEECBGGGTTBCCHHHHGGG
T ss_pred cceEEEECCHHHHHHHHHHHhhhhhcC-CCCCEEEEeCCCCccHHHHHH--HcCCCcEEEEEecCcccCCCCCHHHHHHh
Confidence 4678888999887776665421 11 378999999999999888753 2346788777653 34555
Q ss_pred cCCCEeEEEEEcC-CCCeeecc---HHHHHHHH--HhCCcEEEEEecCcc-ccC-CCCCCc--ccceEEEecC-cccccc
Q 001989 294 KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNA--HANGVKVVMATDLLA-LTI-LKPPGE--LGADIVVGSA-QRFGVP 362 (985)
Q Consensus 294 l~~~t~~V~v~~p-n~~G~v~d---i~~I~~~a--~~~galliV~a~~~~-lg~-l~~~~~--~GaDi~v~s~-k~lg~P 362 (985)
+++++++|++++| |.+|.+.+ +++|+++| +++|+++++|. ..+ +.. ..+... .+.+|++.|. |.+|.|
T Consensus 242 ~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De-~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~ 320 (546)
T 2zy4_A 242 KDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDD-VYGTFADDFQSLFAICPENTLLVYSFSKYFGAT 320 (546)
T ss_dssp GSTTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEEC-TTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCG
T ss_pred hCCCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeC-cchhhcccCcCHHHhCCCCEEEEEeCccccCCC
Confidence 6678999999998 78999865 67788888 78899999953 322 211 111111 2567889887 877532
Q ss_pred CCCCCCcEEEEEEchh-hHhcC----CCceeee-eec-CC-CCcceeeecccc-ccccccc--ccCCCccchhHH-HHHH
Q 001989 363 MGYGGPHAAFLATSQE-YKRMM----PGRIVGV-SID-SS-GKPALRVAMQTR-EQHIRRD--KATSNICTAQAL-LANM 430 (985)
Q Consensus 363 ~~~GGP~~G~l~~~~~-~~~~l----p~~~vG~-t~d-~~-g~~~~~l~l~tr-e~~irre--~atsni~t~~~l-~a~~ 430 (985)
|=-+|+++++++ +++++ |....-. ... .. ....+.+.+..| ....|+- ..+..+++.... .++.
T Consensus 321 ----GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~ 396 (546)
T 2zy4_A 321 ----GWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALF 396 (546)
T ss_dssp ----GGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHH
T ss_pred ----CcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHH
Confidence 112699998875 54443 2100000 000 00 000000000000 0000110 011122211111 1111
Q ss_pred HHHHHHHh--CcchHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCCCcce-EEEecC-------------------C-HHH
Q 001989 431 AAMYAVYH--GPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDT-VKVKCA-------------------D-AHA 487 (985)
Q Consensus 431 aa~~l~~~--g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~-~~~~~~-------------------~-~~~ 487 (985)
+. .+++ +..-++++.+...++.+++.+.|. ++ +.... +...- +.++++ . ...
T Consensus 397 a~--~all~~~~~~~~~~r~~~~~r~~~l~~~L~-~~-~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~ 471 (546)
T 2zy4_A 397 SL--FALMDEADEYKHTLKQLIRRRETTLYRELG-MP-PLRDE-NAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDM 471 (546)
T ss_dssp HH--HHHHCTTCHHHHHHHHHHHHHHHHHHGGGT-SS-CCCCT-TBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHH
T ss_pred HH--HHHHhccHHHHHHHHHHHHHHHHHHHHhcC-CC-cccCC-CCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHH
Confidence 11 1232 223356677777778888888875 44 43221 11111 223321 1 234
Q ss_pred HHHHHHHcCceeeee-----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 488 IASAAYKIEMNLRVV-----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 488 v~~~L~~~GI~~~~~-----~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
+.+.|.++||.+.+- ..+++|+++. ..++++++++++.|+.
T Consensus 472 l~~ll~~~gV~v~pG~~F~~~~~~iRis~~-~~~~e~i~~~~~~l~~ 517 (546)
T 2zy4_A 472 LFRIADETGIVLLPGRGFGSNRPSGRASLA-NLNEYEYAAIGRALRK 517 (546)
T ss_dssp HHHHHHHHSCCCEESSCTTCSSCEEEEESS-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCEEEeCccccCCCCCeEEEEec-cCCHHHHHHHHHHHHH
Confidence 666777889987542 2468999997 4589999999999874
No 467
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=98.36 E-value=2.9e-10 Score=132.72 Aligned_cols=276 Identities=15% Similarity=0.134 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHhcCCCCcceeeccchHHHHHHHHHH-hhhhcCCCCEEEEcCC-CChhHHHHHHHhhcCCCe--EEEE-
Q 001989 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMC-NNIQKGKKKTFIIASN-CHPQTIDICITRADGFDI--KVVV- 285 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a-~~~~~~~g~~Vlv~~~-~H~s~~~~~~~~a~~~gi--~v~~- 285 (985)
+...++.+.++++++ ....+.++++||.++++++.+ +.+. ++++||+.+. .|......+ +-....|+ .+..
T Consensus 140 ~~~~~Lae~L~~~~p-~~~~v~~~nSGseA~~~Aik~ar~~t--gr~~ii~~~~~yHG~~~~~~-sg~~~~g~~~~~~~~ 215 (465)
T 2yky_A 140 ENEALFAEAVCDRFP-SIDLVRFTNSGTEANLMALATATAIT--GRKTVLAFDGGYHGGLLNFA-SGHAPTNAPYHVVLG 215 (465)
Confidence 344567788999994 233477888999888877743 3233 5688887664 555555443 10011233 2222
Q ss_pred --eCchhhhc-cC---CCEeEEEEEc-CCCCeeecc----HHHHHHHHHhCCcEEEEEecCccccCCCCC---Cccc--c
Q 001989 286 --SDLKDIDY-KS---GDVCGVLVQY-PGTEGEVLD----YGDFIKNAHANGVKVVMATDLLALTILKPP---GELG--A 349 (985)
Q Consensus 286 --v~~~~l~~-l~---~~t~~V~v~~-pn~~G~v~d----i~~I~~~a~~~galliV~a~~~~lg~l~~~---~~~G--a 349 (985)
.|+++|++ ++ +++++|++.. ++..|.+.+ +++|.++|+++|+++++| +..+ +..... ..+| .
T Consensus 216 ~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~D-Ev~~-~r~g~~~a~~~~gv~p 293 (465)
T 2yky_A 216 VYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFD-EVMT-SRLSGGGAQEMLGISA 293 (465)
Confidence 34566776 65 6788888764 355897776 999999999999999994 3334 211111 1233 5
Q ss_pred eEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHH
Q 001989 350 DIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLAN 429 (985)
Q Consensus 350 Di~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~ 429 (985)
|+++. +|.+++ |--+|++++++++++.+.+...| . +. ..+|. +.+. + +.
T Consensus 294 Di~t~-sK~lg~-----G~piG~v~~~~~i~~~l~~~~~g-------~--~~------------~~~T~--~~np-l-a~ 342 (465)
T 2yky_A 294 DLTTL-GKYIGG-----GMSFGAFGGRRDLMERFDPARDG-------A--FA------------HAGTF--NNNI-L-TM 342 (465)
Confidence 76532 488863 22257888888887766321001 0 00 00111 1111 1 12
Q ss_pred HHHH-HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC-CeEEc----CCCCcceEEEec-------------CC-HHHHH
Q 001989 430 MAAM-YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG-TVEVQ----GLPFFDTVKVKC-------------AD-AHAIA 489 (985)
Q Consensus 430 ~aa~-~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g-~~~~~----~~~~~~~~~~~~-------------~~-~~~v~ 489 (985)
.|++ -+..+.. +++.++..++.++++++|+++. .+.+. +...+-.|.|.. .. ..++.
T Consensus 343 aAa~aaL~~l~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~ 419 (465)
T 2yky_A 343 SAGHAALTQIYT---RQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFF 419 (465)
Confidence 2221 1233333 2467777888889988888751 12221 111111121211 01 45788
Q ss_pred HHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001989 490 SAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 490 ~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~~ 530 (985)
+.|.++||.+.....+. ++..+|++|||+++++|.+.
T Consensus 420 ~~ll~~GV~v~p~~~~~----~s~~~t~edid~~l~~l~~~ 456 (465)
T 2yky_A 420 FHMLRKGIYLAPRGMYA----LSLEIADAGRDAFAEALADF 456 (465)
Confidence 88999999886532222 55679999999999999753
No 468
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=98.75 E-value=1.6e-06 Score=100.77 Aligned_cols=273 Identities=15% Similarity=0.120 Sum_probs=154.9
Q ss_pred HHHHHHHHhcCCC-CcceeeccchHHHHHHHH-HHhhhhcCCCCEEEEcC-CCChhHHHHHHHhhc------C---CCeE
Q 001989 215 NFQTMIADLTGLP-MSNASLLDEGTAAAEAMA-MCNNIQKGKKKTFIIAS-NCHPQTIDICITRAD------G---FDIK 282 (985)
Q Consensus 215 e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~-~a~~~~~~~g~~Vlv~~-~~H~s~~~~~~~~a~------~---~gi~ 282 (985)
++.+.+++++..+ ...+.+.++||.+.|+++ +|+.++ .+++|+.-+ +-|..+...+..... . ..-.
T Consensus 111 ~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t--~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~ 188 (456)
T 4atq_A 111 AVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLAT--GRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPE 188 (456)
T ss_dssp HHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH--CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSS
T ss_pred HHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhh--cCCeEEEEecccCCccccccccccCccccccCCCCcccc
Confidence 3456788888543 334667789998888777 676665 567777655 667665544421111 0 1122
Q ss_pred EEEeCc--------------h-------hhhc-cC-CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEec
Q 001989 283 VVVSDL--------------K-------DIDY-KS-GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATD 334 (985)
Q Consensus 283 v~~v~~--------------~-------~l~~-l~-~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galliV~a~ 334 (985)
+..+|. + .+++ +. +++++|++.-- ..-|.+.+ +++|.++|+++|+++|+| +
T Consensus 189 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~D-E 267 (456)
T 4atq_A 189 VYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIAD-E 267 (456)
T ss_dssp EEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEE-C
T ss_pred ceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEec-c
Confidence 333332 1 1122 23 46888887632 45577653 899999999999999994 3
Q ss_pred Cc-cccCCCC---CCccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeeccccc
Q 001989 335 LL-ALTILKP---PGELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTRE 408 (985)
Q Consensus 335 ~~-~lg~l~~---~~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre 408 (985)
.. ++|-... -..+| .||++. +|.++ .|.|- |.+.+++++.+.+.+...|
T Consensus 268 V~tG~GRtG~~~a~e~~gv~PDivt~-gK~lg----gg~P~-~av~~~~~i~~~~~~~~~~------------------- 322 (456)
T 4atq_A 268 VQSGFCRTGEWFAVDHEGVVPDIITM-AKGIA----GGLPL-SAITGRADLLDAVHPGGLG------------------- 322 (456)
T ss_dssp TTTTTTTTSSSSGGGGTTCCCSEEEE-CGGGG----TTSSC-EEEEEEHHHHTTSCTTSSC-------------------
T ss_pred cccccCCccccccccccCCCCchhhh-hhccc----CcCCc-eeeEecHHHHhcccccCCC-------------------
Confidence 32 3332211 12234 498766 47775 34455 4466777777665321111
Q ss_pred ccccccccCCCccchhHHHHHHHHH-HHHHhCcchHHHHHHHHHHHHHHHHHHHhcC----C--CeEEcCC----CCcce
Q 001989 409 QHIRRDKATSNICTAQALLANMAAM-YAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----G--TVEVQGL----PFFDT 477 (985)
Q Consensus 409 ~~irre~atsni~t~~~l~a~~aa~-~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g--~~~~~~~----~~~~~ 477 (985)
+| +- . .++ +.+|++ -+..+..++ +.++..++.++++++|+++ . +..++.+ -.+--
T Consensus 323 -------~T-f~-g-npl-a~aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~g 388 (456)
T 4atq_A 323 -------GT-YG-G-NPV-ACAAALAAIDTMEQHD---LNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLA 388 (456)
T ss_dssp -------CS-SS-S-CHH-HHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEE
T ss_pred -------CC-CC-C-ChH-HHHhhHHHHHHHhhcc---HHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEE
Confidence 11 11 1 122 112222 235554444 4455566677777776653 1 0011110 01111
Q ss_pred EEEecC-----C---HHHHHHHHHHcCceeeeec--CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 478 VKVKCA-----D---AHAIASAAYKIEMNLRVVD--SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 478 ~~~~~~-----~---~~~v~~~L~~~GI~~~~~~--~~~lris~t~~~t~edId~li~aL~~ 529 (985)
|-+..+ . +..+.+.+.++|+.+.... ++.||+++....|++|||+++++|.+
T Consensus 389 iel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~ 450 (456)
T 4atq_A 389 IELVQPGSKEPNAELTKAVAAACLKEGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAA 450 (456)
T ss_dssp EEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEecCCCCCcCHHHHHHHHHHHHHCCCEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 222111 2 5678899999999886542 47899999999999999999998874
No 469
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=98.64 E-value=2.6e-06 Score=99.38 Aligned_cols=289 Identities=12% Similarity=0.148 Sum_probs=160.2
Q ss_pred HHHHHHHHhcCCCCcceeeccchHHHHHHHH-HHhhhh--c--CCCCEEEEcC-CCChhHHHHHHHhh----cC-----C
Q 001989 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMA-MCNNIQ--K--GKKKTFIIAS-NCHPQTIDICITRA----DG-----F 279 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~-~a~~~~--~--~~g~~Vlv~~-~~H~s~~~~~~~~a----~~-----~ 279 (985)
++-+.|++++..+...+.+.++||.+.|+++ +|+.+. + .++.+||.-. +-|..+...+..-. +. .
T Consensus 115 ~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~ 194 (473)
T 4e3q_A 115 MLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLP 194 (473)
T ss_dssp HHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCT
T ss_pred HHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCC
Confidence 4556888888766556878899999999877 665442 1 2455676544 66766555442110 00 1
Q ss_pred CeEEEEeCc-------------------hhhhc-c----CCCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEE
Q 001989 280 DIKVVVSDL-------------------KDIDY-K----SGDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVV 330 (985)
Q Consensus 280 gi~v~~v~~-------------------~~l~~-l----~~~t~~V~v~~p-n~~G~v~d----i~~I~~~a~~~galli 330 (985)
+......|. +++++ + .+++++|++.-- ..-|.+.+ +++|.++|+++|++||
T Consensus 195 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI 274 (473)
T 4e3q_A 195 GFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVI 274 (473)
T ss_dssp TEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEE
T ss_pred cccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEe
Confidence 222221111 12222 1 245777777542 45677653 8999999999999999
Q ss_pred EEecCc-cccCCCCC---Cccc--ceEEEecCccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeec
Q 001989 331 MATDLL-ALTILKPP---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAM 404 (985)
Q Consensus 331 V~a~~~-~lg~l~~~---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l 404 (985)
+| +.. ++|-.... ..+| .||++. +|.++ .|+--+|.+.+++++.+.+.+..-. . + . +
T Consensus 275 ~D-EV~tGfGRtG~~fa~e~~gv~PDi~t~-~K~l~----gG~~Pl~av~~~~~i~~~~~~~~~~---~--~-~-~---- 337 (473)
T 4e3q_A 275 SD-EVICGFGRTGNTWGCVTYDFTPDAIIS-SKNLT----AGFFPMGAVILGPELSKRLETAIEA---I--E-E-F---- 337 (473)
T ss_dssp EE-CTTTSSSTTSSSCHHHHTTCCCSEEEE-CGGGG----TTSSCCEEEEECHHHHHHHHHHHHH---H--S-C-C----
T ss_pred cc-CccccCCcccchhHHHhcCCCCChHHh-ccccc----CCCCCcccccccHHHHHHhcccccc---c--c-c-c----
Confidence 95 332 34322111 1123 488653 57774 2333445667788876654211000 0 0 0 0
Q ss_pred ccccccccccccCCCccchhHHHHHHHHH-HHHHhCcchHHHHHHHHHHHHHHHHHHHhcCC---CeE-EcCCCCcceEE
Q 001989 405 QTREQHIRRDKATSNICTAQALLANMAAM-YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG---TVE-VQGLPFFDTVK 479 (985)
Q Consensus 405 ~tre~~irre~atsni~t~~~l~a~~aa~-~l~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~-~~~~~~~~~~~ 479 (985)
.-|+.+- . .++ +.++++ -+..+..++ +.++..++..+|+++|+++. .+. +-+.-.+-.+-
T Consensus 338 ---------~hg~T~~-G-npl-a~Aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG~Gl~~gie 402 (473)
T 4e3q_A 338 ---------PHGFTAS-G-HPV-GCAIALKAIDVVMNEG---LAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALE 402 (473)
T ss_dssp ---------CCCCTTT-T-CHH-HHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEE
T ss_pred ---------ccCCCCC-C-Ccc-hhhhhhhhhhhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCeeEEeecceEEEEE
Confidence 0111111 1 122 222222 235554544 45566677888888887641 111 10000010111
Q ss_pred Ee----------cC-C-HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhCCCCCCCCHHhhhh
Q 001989 480 VK----------CA-D-AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAE 542 (985)
Q Consensus 480 ~~----------~~-~-~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~edId~li~aL~~~~~~~~~~~~l~~ 542 (985)
+. .. . ...+.+.+.++|+.++.. .+.+++++....|++|||+++++|.+. ++++++
T Consensus 403 lv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~-g~~i~l~PPL~it~~eid~~~~~l~~a------l~~v~a 470 (473)
T 4e3q_A 403 AVKDKASKTPFDGNLSVSERIANTCTDLGLICRPL-GQSVVLCPPFILTEAQMDEMFDKLEKA------LDKVFA 470 (473)
T ss_dssp ECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEE-TTEEEECCCTTCCHHHHHHHHHHHHHH------HHHHHH
T ss_pred EecCccccccccccHHHHHHHHHHHHHCCcEEEec-CCEEEEeCCCCCCHHHHHHHHHHHHHH------HHHHHH
Confidence 10 00 1 577899999999988764 578999999999999999999999863 566554
No 470
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=98.47 E-value=1e-05 Score=92.82 Aligned_cols=307 Identities=13% Similarity=0.064 Sum_probs=164.5
Q ss_pred cCCCCCC-----CCCcHHHHHH--HHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhc-CC-----CCcc--eeecc
Q 001989 171 IGMGYYN-----THVPPVILRN--IMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLT-GL-----PMSN--ASLLD 235 (985)
Q Consensus 171 lG~g~y~-----~~~p~~v~~~--i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~-g~-----~~~~--~sl~~ 235 (985)
+|.|.|+ ...|+.+.++ ++........|+|.+ |.. ++++.+|+++ +. ++.+ +..+.
T Consensus 34 l~~G~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~-----G~~----~lr~aia~~~~~~~~~~~~~~~i~i~~t~ 104 (405)
T 3k7y_A 34 LSIGVCCNDDGDLHIFDSVLNADKLVTENYKEKPYLLGN-----GTE----DFSTLTQNLIFGNNSKYIEDKKICTIQCI 104 (405)
T ss_dssp CSCSSCBCTTSSBCCCHHHHHHHHHHHHHCCCCCCCTTS-----SCH----HHHHHHHHHHHCSSCTTTTTTCEEEEEEE
T ss_pred eeeeeeECCCCCCcccHHHHHHHHHhcCCCCCCCCCCCC-----CcH----HHHHHHHHHHcCCCCccccccceEEEEcC
Confidence 5777652 2356777544 221112245666532 322 3455555554 22 2233 46778
Q ss_pred chHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----------hhhhc-cC--CCEeEEE
Q 001989 236 EGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----------KDIDY-KS--GDVCGVL 302 (985)
Q Consensus 236 ~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~v~~v~~----------~~l~~-l~--~~t~~V~ 302 (985)
|++.++..+..++.-. .+ |+|++++-.++.+...++ ..|.+++.+++ +++++ +. +++++++
T Consensus 105 G~~~al~~~~~~l~~~-~~-d~Vlv~~P~y~~~~~~~~----~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~ 178 (405)
T 3k7y_A 105 GGTGAIFVLLEFLKML-NV-ETLYVTNPPYINHVNMIE----SRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVI 178 (405)
T ss_dssp HHHHHHHHHHHHHHTT-TC-CEEEEESSCCHHHHHHHH----TTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEEE
T ss_pred chHHHHHHHHHHHHhc-CC-CEEEEeCCCCHhHHHHHH----HcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEEE
Confidence 8887777665544210 16 999999999999988875 46888888764 23444 43 4567787
Q ss_pred EEc-C-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccC--CC-C--C----Ccccce-EEEecC-ccccccCCCC
Q 001989 303 VQY-P-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTI--LK-P--P----GELGAD-IVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 303 v~~-p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~--l~-~--~----~~~GaD-i~v~s~-k~lg~P~~~G 366 (985)
+.. | |.+|.+. .+++|+++|+++|++++.|.-...+.. .. + + ...+-. |++.|. |.|+.|
T Consensus 179 l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~---- 254 (405)
T 3k7y_A 179 LQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLY---- 254 (405)
T ss_dssp ECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCT----
T ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCc----
Confidence 765 3 8999875 578889999999999999531111211 00 0 0 011222 556665 888643
Q ss_pred CCcEEEEEE---chhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHHHH--hC--
Q 001989 367 GPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVY--HG-- 439 (985)
Q Consensus 367 GP~~G~l~~---~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l~~--~g-- 439 (985)
|=-+|++.+ ++++++.+-.. + ....|. .+.|++. +...+++.++.. ++
T Consensus 255 GlRiG~~~~~~~~~~~~~~~~~~-----------------l----~~~~~~---~~~~~~~-~~q~~~~~~l~~~~l~~~ 309 (405)
T 3k7y_A 255 GERAGALHIVCKNQEEKKIVFNN-----------------L----CFIVRK---FYSSPVI-HTNRILCQLLNNQNLKLN 309 (405)
T ss_dssp TTTEEEEEEECSSHHHHHHHHHH-----------------H----HHHHHT---TTSSCCH-HHHHHHHHHHHCHHHHHH
T ss_pred cccceEEEEEeCCHHHHHHHHHH-----------------H----HHHHhc---ccCCCcH-HHHHHHHHHhCCHHHHHH
Confidence 334688753 33433322000 0 000010 1112111 111111111111 00
Q ss_pred -cchHHHHHHHHHHHHHHHHHHHh----cCCC---eEEcCCCCcceEEE-ecCCHHHHHHHHHHcCceeeeecCCeEEEE
Q 001989 440 -PEGLKTIAQRVHGLAGTFALGLK----KLGT---VEVQGLPFFDTVKV-KCADAHAIASAAYKIEMNLRVVDSNTVTAS 510 (985)
Q Consensus 440 -~~Gl~~i~~~~~~~a~~l~~~L~----~~g~---~~~~~~~~~~~~~~-~~~~~~~v~~~L~~~GI~~~~~~~~~lris 510 (985)
.+-++++.++..++.+++.+.|+ ++|. ++... +...-|.+ ..+ .+..++|.++||.+.+ .+ |+|
T Consensus 310 ~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~-p~gg~f~~~~l~--~~~~~~L~~~gV~v~p--~~--Ris 382 (405)
T 3k7y_A 310 WIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYK-KQRGLFSFVPLL--AKIAEHLKTHHIYIIN--NG--RIN 382 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGS-SCCSSEEECGGG--GGGTTTTTTTTEECCT--TS--EEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcccc-CCceEEEecCCC--HHHHHHHHHCCEeecC--CC--eEE
Confidence 12345666777888899999998 7751 23332 11111322 222 2444667667997754 23 888
Q ss_pred eccCCCHHHHHHHHHHHhC
Q 001989 511 FDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 511 ~t~~~t~edId~li~aL~~ 529 (985)
+.- .++++|++++++|.+
T Consensus 383 ~a~-~~~~~i~~~~~~i~~ 400 (405)
T 3k7y_A 383 VSG-ITKNNVDYIADKICL 400 (405)
T ss_dssp GGG-CCTTHHHHHHHHHHH
T ss_pred Eec-cCHHHHHHHHHHHHH
Confidence 763 355778888888763
No 471
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=98.35 E-value=1.5e-05 Score=91.58 Aligned_cols=312 Identities=15% Similarity=0.138 Sum_probs=160.6
Q ss_pred cCCCCCCC-----CCcHHHHHH---HHhCCccccccCCChhhHhhhHHHHHHHHHHHHHHhc-CC--CCcc--eeeccch
Q 001989 171 IGMGYYNT-----HVPPVILRN---IMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLT-GL--PMSN--ASLLDEG 237 (985)
Q Consensus 171 lG~g~y~~-----~~p~~v~~~---i~~~~~~~t~~~pyq~e~sqg~l~~i~e~q~~ia~L~-g~--~~~~--~sl~~~~ 237 (985)
||-|.|.. .+++.|.++ +++ .++.-.|+|.+ |. -++++.+++++ |- +... ..-+.+|
T Consensus 49 LgvG~y~d~~g~~~vl~~Vk~A~~~~~~-~~~~~~Y~p~~-----G~----p~lr~aia~~~~g~~~~~~~~~~~qt~gg 118 (420)
T 4h51_A 49 LVIGAYRDEQGRPYPLRVVRKAEQLLLD-MNLDYEYLPIS-----GY----QPFIDEAVKIIYGNTVELENLVAVQTLSG 118 (420)
T ss_dssp CCSCCCBCTTSCBCCCHHHHHHHHHHHH-TTCCCCCCCTT-----CC----HHHHHHHHHHHHC---CGGGEEEEEEEHH
T ss_pred eecCcccCCCCCCCCCHHHHHHHHHHhc-CCCCCCCCCcC-----Ch----HHHHHHHHHHhcCCCccccccceeeecCc
Confidence 68887642 243455322 333 33323576643 22 23555666654 32 2222 2235677
Q ss_pred HHHHHHHH-HHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeE-EEEe---C-------chhhhc----cCCCEeEE
Q 001989 238 TAAAEAMA-MCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIK-VVVS---D-------LKDIDY----KSGDVCGV 301 (985)
Q Consensus 238 ta~~ea~~-~a~~~~~~~g~~Vlv~~~~H~s~~~~~~~~a~~~gi~-v~~v---~-------~~~l~~----l~~~t~~V 301 (985)
|++....+ +..+...++||+|++++-.++.+...++. .|.+ +... + .+.+.+ ..++++.+
T Consensus 119 tga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~----aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vl 194 (420)
T 4h51_A 119 TGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKA----AGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFI 194 (420)
T ss_dssp HHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHH----TTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEE
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHH----cCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEE
Confidence 76654333 22222124899999999999998888764 3443 2221 1 122222 35667767
Q ss_pred EEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecCccccC--CC-CC------CcccceE-EEecC-ccccccCCCC
Q 001989 302 LVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTI--LK-PP------GELGADI-VVGSA-QRFGVPMGYG 366 (985)
Q Consensus 302 ~v~~p-n~~G~v~---di~~I~~~a~~~galliV~a~~~~lg~--l~-~~------~~~GaDi-~v~s~-k~lg~P~~~G 366 (985)
++.+| |++|.+. ++++|+++|++++.+++.|.-...+.. .. ++ .+.+-.+ ++.|. |.|+.+
T Consensus 195 l~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~---- 270 (420)
T 4h51_A 195 LHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLY---- 270 (420)
T ss_dssp EESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCG----
T ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccc----
Confidence 76677 8999875 688999999999999988532222211 10 00 0122233 45554 877643
Q ss_pred CCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHH-----HHhCcc
Q 001989 367 GPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYA-----VYHGPE 441 (985)
Q Consensus 367 GP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l-----~~~g~~ 441 (985)
|--+|++.+..+..+.+. ++. ..-..+.|. ..+|. ....+..++..+ ...-.+
T Consensus 271 G~RvG~~~~~~~~~~~~~-~~~-----------------~~l~~~~r~-~~s~~---p~~~a~~~~~~l~d~~l~~~~~~ 328 (420)
T 4h51_A 271 SERAGTLSLLLKDKTKRA-DVK-----------------SVMDSLIRE-EYTCP---PAHGARLAHLILSNNELRKEWEA 328 (420)
T ss_dssp GGCEEEEEEECSCHHHHH-HHH-----------------HHHHHHHHT-TTSSC---CHHHHHHHHHHHHSHHHHHHHHH
T ss_pred cCceEEEEecccCHHHHH-HHH-----------------HHHHHhhhc-ccCcc---hHHHHHHHHHHhcCHHHHHHHHH
Confidence 234677766433222110 000 000011111 11222 111111121111 111123
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCeEE-cC--CCCcceEEEecCCHHHHHHHHHHcCceeeeecCCeEEEEeccCCCHH
Q 001989 442 GLKTIAQRVHGLAGTFALGLKKLGTVEV-QG--LPFFDTVKVKCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLE 518 (985)
Q Consensus 442 Gl~~i~~~~~~~a~~l~~~L~~~g~~~~-~~--~~~~~~~~~~~~~~~~v~~~L~~~GI~~~~~~~~~lris~t~~~t~e 518 (985)
-++.+.++..+..+.|.+.|+++| ... +. .+...-|.+ .+-..+..+.|+++||++-. ++ |||+.- -+++
T Consensus 329 ~~~~m~~r~~~~R~~l~~~L~~~g-~~~~~~~i~~q~GmF~~-~gls~e~v~~L~e~~Vy~~~--~g--Ris~Ag-l~~~ 401 (420)
T 4h51_A 329 ELSAMAERIRTMRRTVYDELLRLQ-TPGSWEHVINQIGMFSF-LGLSKAQCEYCQNHNIFITV--SG--RANMAG-LTHE 401 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-CSSCCTHHHHCCSSEEE-CCCCHHHHHHHHHTTEECCT--TC--EEEGGG-CCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCeecCCCceEEe-cCcCHHHHHHHHhCCEEEcC--CC--EEEecc-CCHH
Confidence 456777888888899999999886 211 10 000112443 22123445788899997642 23 888764 4678
Q ss_pred HHHHHHHHHhC
Q 001989 519 DVDKLFIVFAG 529 (985)
Q Consensus 519 dId~li~aL~~ 529 (985)
.|+++++++.+
T Consensus 402 ni~~~a~aI~~ 412 (420)
T 4h51_A 402 TALMLAQTIND 412 (420)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999988864
No 472
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=98.20 E-value=5.5e-05 Score=94.20 Aligned_cols=285 Identities=14% Similarity=0.101 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHhcCCC-CcceeeccchHHHHHHHH-HHhh-hhc--C----------CCCEEEE-cCCCChhHHHHHHHh
Q 001989 212 SLLNFQTMIADLTGLP-MSNASLLDEGTAAAEAMA-MCNN-IQK--G----------KKKTFII-ASNCHPQTIDICITR 275 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~-~a~~-~~~--~----------~g~~Vlv-~~~~H~s~~~~~~~~ 275 (985)
...++.+.++++++.+ ...+.+.++|+.+.|+++ ||++ +.. + .+.+||. ..+-|.++...+..-
T Consensus 425 ~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~t 504 (831)
T 4a0g_A 425 PALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQ 504 (831)
T ss_dssp HHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTS
T ss_pred HHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeecc
Confidence 3346778999999744 345778899999999777 6743 321 1 1346664 557888877766421
Q ss_pred h-----c--------CCCeE-------------EEEeC---------------c------------------hhhhc-cC
Q 001989 276 A-----D--------GFDIK-------------VVVSD---------------L------------------KDIDY-KS 295 (985)
Q Consensus 276 a-----~--------~~gi~-------------v~~v~---------------~------------------~~l~~-l~ 295 (985)
. . .++.- ....| . ++|++ +.
T Consensus 505 g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~ 584 (831)
T 4a0g_A 505 APSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQ 584 (831)
T ss_dssp CCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC-
T ss_pred CccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHH
Confidence 0 0 01110 11111 0 23444 42
Q ss_pred --------CCEeEEEEEcC--CCCeeecc----HHHHHHHHHhCCcEEEEEecCc-cccCCCCC---Cccc--ceEEEec
Q 001989 296 --------GDVCGVLVQYP--GTEGEVLD----YGDFIKNAHANGVKVVMATDLL-ALTILKPP---GELG--ADIVVGS 355 (985)
Q Consensus 296 --------~~t~~V~v~~p--n~~G~v~d----i~~I~~~a~~~galliV~a~~~-~lg~l~~~---~~~G--aDi~v~s 355 (985)
+++++|++..- +.-|.+.+ +++|.++|+++|+++|+| +.. ++|-.... ..+| .||++ -
T Consensus 585 ~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~D-EV~tGfGRtG~~fa~e~~gv~PDiit-l 662 (831)
T 4a0g_A 585 EHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFD-EVFTGFWRLGVETTTELLGCKPDIAC-F 662 (831)
T ss_dssp --------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEE-CTTTTTTTTSBSSTHHHHSSCCSEEE-E
T ss_pred hhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEE-cCccccccCCCchhhHhcCCCCcEEE-E
Confidence 34666766542 45676654 899999999999999995 332 34433221 1234 38764 3
Q ss_pred CccccccCCCCCCcEEEEEEchhhHhcCCCceeeeeecCCCCcceeeecccccccccccccCCCccchhHHHHHHHHHHH
Q 001989 356 AQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYA 435 (985)
Q Consensus 356 ~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~t~d~~g~~~~~l~l~tre~~irre~atsni~t~~~l~a~~aa~~l 435 (985)
+|.|++ |.=-+|++.+++++.+.+... .+... ...+.++-..+.+..+..++ +
T Consensus 663 sK~L~g----G~~Plgav~~~~~i~~~~~~~----------~~~~~-----------~~hg~T~~g~Pla~Aaala~--L 715 (831)
T 4a0g_A 663 AKLLTG----GMVPLAVTLATDAVFDSFSGD----------SKLKA-----------LLHGHSYSAHAMGCATAAKA--I 715 (831)
T ss_dssp CGGGGT----TSSCCEEEEECHHHHHTTCSS----------CGGGS-----------CCCCCTTTTCHHHHHHHHHH--H
T ss_pred eccccc----CccCcEEEEECHHHHHHHhcc----------ccccc-----------ceeecCCcccHHHHHHHHHH--H
Confidence 487742 212247788899988776321 00000 00111111111111122222 2
Q ss_pred HHhCcchHHHHHHHHHHHH--------HHHHHHHhcCCCeEEc-CCCCcceEEEec-------CC--HHHHHHHHHHcCc
Q 001989 436 VYHGPEGLKTIAQRVHGLA--------GTFALGLKKLGTVEVQ-GLPFFDTVKVKC-------AD--AHAIASAAYKIEM 497 (985)
Q Consensus 436 ~~~g~~Gl~~i~~~~~~~a--------~~l~~~L~~~g~~~~~-~~~~~~~~~~~~-------~~--~~~v~~~L~~~GI 497 (985)
..+..+++. ++..++. +.+.+.+.+.+.+.-+ ..-.+-.+.+.. .. +.++.++|.++||
T Consensus 716 ~~i~~~~l~---~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv 792 (831)
T 4a0g_A 716 QWFKDPETN---HNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGI 792 (831)
T ss_dssp HHHHCTTTC---TTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEEETTEEEEEEC---------CHHHHHHHHHHHHTTE
T ss_pred HHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHhhCCCceeEeecccEEEEEEecCccccccchHHHHHHHHHHHHCCc
Confidence 333222221 1111111 1233344444322211 111111122211 11 6678999999999
Q ss_pred eeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 498 NLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 498 ~~~~~~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
.++.. .+.||++++..+|++|||+++++|..
T Consensus 793 ~v~p~-g~~lrl~pp~~~t~e~id~~~~~l~~ 823 (831)
T 4a0g_A 793 FTRPL-GNVIYLMCGPCTSPEICRRLLTKLYK 823 (831)
T ss_dssp ECCCB-TTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred EEEec-CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 98764 57999999999999999999999874
No 473
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=60.23 E-value=9.2 Score=35.04 Aligned_cols=50 Identities=16% Similarity=0.401 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHhCCCCHHHhhhhcCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHH
Q 001989 104 SATPEDQAKMSELVGLDNLDSLIDATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQK 159 (985)
Q Consensus 104 ~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~ 159 (985)
|++.++.+++++.+|.+++++||.. .+- .+. +++- .+.+|+.|+++.|.+
T Consensus 40 ~~t~~eL~~~l~~~g~~~~~~l~n~---~~~~~k~-l~l~--~~~ls~~~~~~lm~~ 90 (119)
T 3f0i_A 40 SPSVEELKRLYQQLGLNEVRAMMRC---KEELYKE-LNLG--DSQLSDDALFAAMAE 90 (119)
T ss_dssp CCCHHHHHHHHHHHTCSSGGGGBCT---TSHHHHH-TTTT--CTTCCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHcCCccHHHHhcC---CCchhhh-cCcc--cccCCHHHHHHHHHh
Confidence 6889999999999999889999974 333 332 4443 247899999887764
No 474
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=55.29 E-value=13 Score=34.21 Aligned_cols=50 Identities=18% Similarity=0.389 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHhCCCCHHHhhhhcCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHH
Q 001989 104 SATPEDQAKMSELVGLDNLDSLIDATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQK 159 (985)
Q Consensus 104 ~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~ 159 (985)
|++.++.+++++.+|.+++++||.. .+- .+. +++- .+.+|+.|+++.|.+
T Consensus 41 ~~~~~eL~~~l~~~g~~~~~~l~n~---~~~~~k~-l~l~--~~~ls~~~~~~lm~~ 91 (121)
T 3rdw_A 41 PPSVDKLKELLQQLGFSDARQLMRT---KEDLYKT-LNLD--DRGLTQDQLLQAMAD 91 (121)
T ss_dssp CCCHHHHHHHHHHTTCSSGGGGBCT---TSHHHHH-TTTT--CTTCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhcCCcCHHHHhcC---CChhhhh-cCcc--cccCCHHHHHHHHHh
Confidence 6788999999999999889999974 333 322 4442 247899999887764
No 475
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=32.20 E-value=68 Score=33.56 Aligned_cols=99 Identities=18% Similarity=0.172 Sum_probs=59.9
Q ss_pred CCEEEE---cCCCChhHHHHHHHh--------hcCC-CeEEEEe----Cchhhhc--cCCCEeEEEEEcCCCCe--eecc
Q 001989 255 KKTFII---ASNCHPQTIDICITR--------ADGF-DIKVVVS----DLKDIDY--KSGDVCGVLVQYPGTEG--EVLD 314 (985)
Q Consensus 255 g~~Vlv---~~~~H~s~~~~~~~~--------a~~~-gi~v~~v----~~~~l~~--l~~~t~~V~v~~pn~~G--~v~d 314 (985)
+.+|++ ....|.-=...+..+ .+.. |+++..+ |++++-+ ...+..+|.++.....+ .+..
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~~~d~VglS~l~t~~~~~~~~ 199 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELEADVLLVSQTVTQKNVHIQN 199 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTTCSEEEEECCCCTTSHHHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEEeecCCccchHHH
Confidence 345654 336775445555544 5567 9999885 4455543 23344556665543333 5667
Q ss_pred HHHHHHHHHhCC----cEEEEEecCccccCCCCCCcccceEEEecC
Q 001989 315 YGDFIKNAHANG----VKVVMATDLLALTILKPPGELGADIVVGSA 356 (985)
Q Consensus 315 i~~I~~~a~~~g----alliV~a~~~~lg~l~~~~~~GaDi~v~s~ 356 (985)
+.++.+.+++.| +.++||-.+..... ..+.|+|.++.++
T Consensus 200 ~~~~i~~L~~~g~~~~i~vivGG~~~~~~~---a~~iGad~~~~da 242 (262)
T 1xrs_B 200 MTHLIELLEAEGLRDRFVLLCGGPRINNEI---AKELGYDAGFGPG 242 (262)
T ss_dssp HHHHHHHHHHTTCGGGSEEEEECTTCCHHH---HHTTTCSEEECTT
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCcCCHHH---HHHcCCeEEECCc
Confidence 889999998877 77888532222111 2467999988776
No 476
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=29.95 E-value=30 Score=30.20 Aligned_cols=27 Identities=11% Similarity=-0.049 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHHHHhCCCCHHHhhhh
Q 001989 102 HNSATPEDQAKMSELVGLDNLDSLIDA 128 (985)
Q Consensus 102 ~~~~~~~~~~~ml~~~g~~~~~~l~~~ 128 (985)
-|||=-...++||..+|+.|+|||-..
T Consensus 8 ~LPNiG~~~e~~L~~vGI~s~e~L~~~ 34 (93)
T 3bqs_A 8 ELPNIGKVLEQDLIKAGIKTPVELKDV 34 (93)
T ss_dssp GSTTCCHHHHHHHHHTTCCSHHHHHHH
T ss_pred cCCCCCHHHHHHHHHcCCCCHHHHHhC
Confidence 366666778999999999999999964
No 477
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=27.62 E-value=68 Score=30.10 Aligned_cols=49 Identities=14% Similarity=0.354 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHhCCCCHHHhhhhcCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHH
Q 001989 104 SATPEDQAKMSELVGLDNLDSLIDATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQK 159 (985)
Q Consensus 104 ~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~ 159 (985)
|++.++.+++++..|+ ++++||.. .+- .+ .+++. .+.+|+.|+++.|.+
T Consensus 38 ~~~~~eL~~~~~~~g~-p~~~l~n~---~~~~yk-~l~l~--~~~ls~~~~~~lm~~ 87 (141)
T 1s3c_A 38 PPSRDELVKLIADMGI-SVRALLRK---NVEPYE-QLGLA--EDKFTDDQLIDFMLQ 87 (141)
T ss_dssp CCCHHHHHHHHHHHTS-CHHHHBCS---SSHHHH-HTTTT--SSCCCHHHHHHHHHH
T ss_pred CccHHHHHHHhcccCC-CHHHhccC---CchhHH-hcCCc--cccCCHHHHHHHHHh
Confidence 5688999999999998 68999964 333 32 24443 246899999887764
No 478
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=26.08 E-value=39 Score=29.49 Aligned_cols=26 Identities=12% Similarity=-0.056 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHHHhCCCCHHHhhhh
Q 001989 103 NSATPEDQAKMSELVGLDNLDSLIDA 128 (985)
Q Consensus 103 ~~~~~~~~~~ml~~~g~~~~~~l~~~ 128 (985)
+||=-...++||..+|+.|+|||-..
T Consensus 9 LPNig~~~e~~L~~~GI~t~~~Lr~~ 34 (93)
T 3mab_A 9 LPNIGKVLEQDLIKAGIKTPVELKDV 34 (93)
T ss_dssp STTCCHHHHHHHHHTTCCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHcCCCCHHHHHhC
Confidence 56655778999999999999999964
No 479
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=24.85 E-value=90 Score=29.89 Aligned_cols=97 Identities=12% Similarity=0.151 Sum_probs=0.0
Q ss_pred CCCCEEE---EcCCCChhHHHHHHHhhcCCCeEEEEe----Cchhhhc--cCCCEeEEEEEcCCCCeeeccHHHHHHHHH
Q 001989 253 GKKKTFI---IASNCHPQTIDICITRADGFDIKVVVS----DLKDIDY--KSGDVCGVLVQYPGTEGEVLDYGDFIKNAH 323 (985)
Q Consensus 253 ~~g~~Vl---v~~~~H~s~~~~~~~~a~~~gi~v~~v----~~~~l~~--l~~~t~~V~v~~pn~~G~v~di~~I~~~a~ 323 (985)
+++.+|+ +....|.--...+..+.+..|++++.+ +++++.+ ...+...|.++..+. .....++++.+.++
T Consensus 16 ~~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~-~~~~~~~~~i~~L~ 94 (161)
T 2yxb_A 16 RRRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNG-AHLHLMKRLMAKLR 94 (161)
T ss_dssp CCSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSS-CHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeech-hhHHHHHHHHHHHH
Q ss_pred hCC---cEEEEEecCcc-----ccCCCCCCcccceEEEecC
Q 001989 324 ANG---VKVVMATDLLA-----LTILKPPGELGADIVVGSA 356 (985)
Q Consensus 324 ~~g---alliV~a~~~~-----lg~l~~~~~~GaDi~v~s~ 356 (985)
+.| +.++||-.+.. + .+.|+|.+++.+
T Consensus 95 ~~g~~~i~v~vGG~~~~~~~~~l------~~~G~d~v~~~~ 129 (161)
T 2yxb_A 95 ELGADDIPVVLGGTIPIPDLEPL------RSLGIREIFLPG 129 (161)
T ss_dssp HTTCTTSCEEEEECCCHHHHHHH------HHTTCCEEECTT
T ss_pred hcCCCCCEEEEeCCCchhcHHHH------HHCCCcEEECCC
No 480
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=24.53 E-value=83 Score=25.89 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcCceeeee-cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 485 AHAIASAAYKIEMNLRVV-DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 ~~~v~~~L~~~GI~~~~~-~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++.+.++|...|+..... .....|+-++.+.++++.+++++.|+.
T Consensus 23 A~~~~~~L~~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 23 ADSLASNAEAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp HHHHHHHHHHHTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 889999999888865433 246789999999999999999998874
No 481
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=23.99 E-value=71 Score=26.60 Aligned_cols=45 Identities=7% Similarity=0.025 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCceeeee-cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001989 485 AHAIASAAYKIEMNLRVV-DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 ~~~v~~~L~~~GI~~~~~-~~~~lris~t~~~t~edId~li~aL~~ 529 (985)
++.+.++|...|+..... .....|+-+.++.++++.+++.+.|+.
T Consensus 23 A~~l~~~L~~~G~~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 23 AETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 889999999889865433 245689999999999999999888874
No 482
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=20.57 E-value=1.1e+02 Score=27.73 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHhCCCCHHHhhhhcCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHH
Q 001989 104 SATPEDQAKMSELVGLDNLDSLIDATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQK 159 (985)
Q Consensus 104 ~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~ 159 (985)
|++.++.+++++..|+. +++||.. .+- .+. +++- .+.+|+.|+++.|.+
T Consensus 36 ~~~~~el~~~l~~~~~~-~~~l~n~---~~~~~k~-l~~~--~~~ls~~~~~~~m~~ 85 (120)
T 3l78_A 36 PLSRDELLKILSYTENG-TEDIIST---RSKVFQK-LDID--VDELSVSELINLISK 85 (120)
T ss_dssp CCCHHHHHHHHHHCSST-HHHHBCT---TCHHHHH-TTCC--GGGCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhcCCC-HHHhhcC---CcHHHHH-cCCC--cccCCHHHHHHHHHh
Confidence 67889999999998874 9999974 333 222 3332 246899999887764
No 483
>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=20.46 E-value=2.6e+02 Score=30.52 Aligned_cols=34 Identities=15% Similarity=0.046 Sum_probs=24.4
Q ss_pred CCCEeEEEEEcCCCCeeeccHHHHHHHHHhC-CcEEEE
Q 001989 295 SGDVCGVLVQYPGTEGEVLDYGDFIKNAHAN-GVKVVM 331 (985)
Q Consensus 295 ~~~t~~V~v~~pn~~G~v~di~~I~~~a~~~-galliV 331 (985)
++++.+|+++ ..|.-.++-+..+.|++. |+.++.
T Consensus 96 ~~~dlvI~iS---~SG~T~e~l~a~~~ak~~~Ga~vIa 130 (373)
T 2aml_A 96 SHLDLVIGIS---QSGQSTSTISALERVKKEASVPVVA 130 (373)
T ss_dssp TTCCEEEEEC---SSSCBHHHHHHHHHHHHHCCCCEEE
T ss_pred CCCCEEEEEc---CCCCCHHHHHHHHHHHHhCCCcEEE
Confidence 4555555554 346667888889999999 987766
No 484
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=20.38 E-value=2.3e+02 Score=31.52 Aligned_cols=113 Identities=15% Similarity=0.095 Sum_probs=59.8
Q ss_pred HHHHHHHHhCCCccceecCcHHHHHHHHHHHHHHHHH-hcCCCCCCEE-EEcCCCCcccHHHH-------HHCCcEEEEE
Q 001989 637 LGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHK-ARGDHHRNVC-IIPVSAHGTNPATA-------AMCGMKIVSV 707 (985)
Q Consensus 637 ~~~~la~l~G~~~~~~~~~sGa~a~~a~l~air~~~~-~~g~~~~~~I-Iv~~~~Hg~~~~~a-------~~~G~~vv~v 707 (985)
+++.+.++.+++...+.|+-|----......+..|.. +++....++| |+-.+.||.....| ...|++++.+
T Consensus 221 v~~~L~kl~~Ldi~~I~P~HGpi~r~~~~~ii~~Y~~w~~~~~~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~ 300 (410)
T 4dik_A 221 ILEGAEKLSSLKIKALLPGHGLIWKKDPQRLLNHYVSVAKGDPKKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVY 300 (410)
T ss_dssp HHHHHHHHHTSCCSEEEESSSCBBSSCHHHHHHHHHHHHHTCCCTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHhCCCCCEEecCCcchhhcCHHHHHHHHHHhhcccccccceeeEEecccChHHHHHHHHHHHHHhcCCceEEE
Confidence 3455666667776555555443100001122333322 2222223344 55677788665543 2468888766
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCCEEEEEEEcCCCccccccCHHHHH
Q 001989 708 GTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEIC 753 (985)
Q Consensus 708 ~~d~~g~iD~e~L~~~i~~~~~~t~~Vvv~~pn~~G~i~~di~eI~ 753 (985)
.+...-..|+.++.+.+. +..+|++..|+..|-+.|+++.+.
T Consensus 301 ~~~d~~~~~~s~i~~~i~----~~~~ivlGspT~~~~~~p~~~~~l 342 (410)
T 4dik_A 301 KFSDEERPAISEILKDIP----DSEALIFGVSTYEAEIHPLMRFTL 342 (410)
T ss_dssp EECSSCCCCHHHHHHHST----TCSEEEEEECCTTSSSCHHHHHHH
T ss_pred EeccCCCCCHHHHHHHHH----hCCeEEEEeCCcCCcCCHHHHHHH
Confidence 553333457777766553 456788888886555543555443
Done!