Query 001990
Match_columns 985
No_of_seqs 808 out of 5576
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 07:43:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001990.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001990hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wyu_A Glycine dehydrogenase ( 100.0 1.5E-60 5.1E-65 558.4 43.0 421 100-528 1-434 (438)
2 1wyu_B Glycine dehydrogenase s 100.0 1.1E-41 3.9E-46 402.4 37.8 405 547-974 29-440 (474)
3 1wyu_A Glycine dehydrogenase ( 100.0 6.6E-37 2.3E-41 358.0 36.6 407 513-972 4-437 (438)
4 1wyu_B Glycine dehydrogenase s 100.0 1.7E-36 5.9E-41 358.1 38.0 374 129-529 29-436 (474)
5 3mc6_A Sphingosine-1-phosphate 100.0 1.4E-29 4.7E-34 300.8 30.5 382 560-977 37-439 (497)
6 2dgk_A GAD-beta, GADB, glutama 100.0 1.6E-26 5.5E-31 271.1 35.3 384 560-978 17-437 (452)
7 3mc6_A Sphingosine-1-phosphate 100.0 9.3E-27 3.2E-31 276.4 33.3 389 102-529 2-432 (497)
8 3mad_A Sphingosine-1-phosphate 100.0 4E-26 1.4E-30 272.2 34.6 383 560-978 70-472 (514)
9 2jis_A Cysteine sulfinic acid 99.9 3E-26 1E-30 273.3 26.3 390 560-973 81-513 (515)
10 3vp6_A Glutamate decarboxylase 99.9 1.4E-25 4.9E-30 266.8 28.1 392 560-975 68-505 (511)
11 3f9t_A TDC, L-tyrosine decarbo 99.9 3.8E-24 1.3E-28 244.7 37.1 363 565-973 7-396 (397)
12 4e1o_A HDC, histidine decarbox 99.9 9.2E-25 3.1E-29 258.1 32.1 387 560-976 50-479 (481)
13 2jis_A Cysteine sulfinic acid 99.9 8.5E-25 2.9E-29 260.7 31.8 359 138-529 79-510 (515)
14 1js3_A DDC;, DOPA decarboxylas 99.9 1.1E-24 3.6E-29 258.1 30.7 389 560-978 45-477 (486)
15 2okj_A Glutamate decarboxylase 99.9 3.7E-25 1.3E-29 263.2 26.2 391 560-974 65-501 (504)
16 3k40_A Aromatic-L-amino-acid d 99.9 1.4E-24 4.8E-29 256.0 29.0 398 549-976 35-472 (475)
17 2dgk_A GAD-beta, GADB, glutama 99.9 1.6E-23 5.4E-28 245.6 36.7 347 139-529 16-429 (452)
18 3hbx_A GAD 1, glutamate decarb 99.9 2.7E-23 9.1E-28 246.8 37.0 380 560-978 31-447 (502)
19 2z67_A O-phosphoseryl-tRNA(SEC 99.9 9.4E-24 3.2E-28 247.8 26.1 358 560-972 57-455 (456)
20 2qma_A Diaminobutyrate-pyruvat 99.9 1.5E-22 5.2E-27 240.2 33.2 382 565-974 75-495 (497)
21 3zrp_A Serine-pyruvate aminotr 99.9 6.4E-23 2.2E-27 233.8 27.7 315 630-980 33-368 (384)
22 2dr1_A PH1308 protein, 386AA l 99.9 2.5E-22 8.7E-27 229.2 31.1 318 630-977 51-381 (386)
23 4hvk_A Probable cysteine desul 99.9 4.2E-22 1.5E-26 226.5 32.3 313 628-979 39-377 (382)
24 3nnk_A Ureidoglycine-glyoxylat 99.9 1.1E-22 3.9E-27 234.3 27.0 313 630-976 44-391 (411)
25 3e9k_A Kynureninase; kynurenin 99.9 4.6E-23 1.6E-27 242.5 22.8 305 213-529 113-456 (465)
26 1elu_A L-cysteine/L-cystine C- 99.9 4.2E-21 1.4E-25 219.4 37.1 314 199-529 47-387 (390)
27 3isl_A Purine catabolism prote 99.9 4.4E-22 1.5E-26 229.7 28.8 312 630-976 42-391 (416)
28 3e9k_A Kynureninase; kynurenin 99.9 1.4E-22 4.8E-27 238.4 23.3 309 633-974 112-460 (465)
29 3f9t_A TDC, L-tyrosine decarbo 99.9 1E-20 3.4E-25 216.3 38.2 347 140-529 4-393 (397)
30 3vp6_A Glutamate decarboxylase 99.9 9.8E-22 3.4E-26 233.7 30.0 363 138-529 66-500 (511)
31 1eg5_A Aminotransferase; PLP-d 99.9 3.5E-21 1.2E-25 219.4 32.8 307 631-978 43-379 (384)
32 1kmj_A Selenocysteine lyase; p 99.9 1.3E-21 4.4E-26 224.8 29.3 312 631-975 66-405 (406)
33 3kgw_A Alanine-glyoxylate amin 99.9 4.7E-22 1.6E-26 227.4 25.5 313 631-976 55-389 (393)
34 1t3i_A Probable cysteine desul 99.9 1.9E-21 6.4E-26 224.6 30.4 313 632-976 72-414 (420)
35 3lvm_A Cysteine desulfurase; s 99.9 9E-21 3.1E-25 219.6 35.9 312 628-977 64-401 (423)
36 2okj_A Glutamate decarboxylase 99.9 2.9E-21 9.9E-26 229.6 32.6 358 139-529 64-497 (504)
37 2z67_A O-phosphoseryl-tRNA(SEC 99.9 3.1E-22 1.1E-26 234.9 23.5 370 99-529 26-453 (456)
38 1kmj_A Selenocysteine lyase; p 99.9 1E-20 3.5E-25 217.2 35.6 304 209-529 65-400 (406)
39 3bc8_A O-phosphoseryl-tRNA(SEC 99.9 1.8E-21 6.1E-26 223.5 28.6 374 560-978 22-446 (450)
40 2huf_A Alanine glyoxylate amin 99.9 2E-21 6.8E-26 222.6 28.8 309 632-976 52-384 (393)
41 1qz9_A Kynureninase; kynurenin 99.9 3.5E-21 1.2E-25 222.5 30.8 306 208-529 68-397 (416)
42 2z9v_A Aspartate aminotransfer 99.9 1.7E-21 5.8E-26 223.1 27.9 314 630-976 40-372 (392)
43 4eb5_A Probable cysteine desul 99.9 5.9E-21 2E-25 217.5 32.2 311 628-977 39-375 (382)
44 4hvk_A Probable cysteine desul 99.9 5.5E-21 1.9E-25 217.3 31.8 292 205-529 37-368 (382)
45 3f0h_A Aminotransferase; RER07 99.9 6.9E-22 2.4E-26 225.1 24.0 311 629-973 49-372 (376)
46 1m32_A 2-aminoethylphosphonate 99.9 2.3E-21 8E-26 219.2 28.1 314 633-973 38-363 (366)
47 3mad_A Sphingosine-1-phosphate 99.9 8E-21 2.7E-25 226.4 33.7 360 135-529 65-464 (514)
48 1elu_A L-cysteine/L-cystine C- 99.9 3.8E-21 1.3E-25 219.8 29.7 304 632-970 59-387 (390)
49 2yrr_A Aminotransferase, class 99.9 1.4E-21 4.7E-26 219.9 25.5 309 630-973 31-351 (353)
50 2ch1_A 3-hydroxykynurenine tra 99.9 2.4E-21 8.3E-26 222.2 28.0 309 632-976 51-384 (396)
51 1vjo_A Alanine--glyoxylate ami 99.9 2.3E-21 7.7E-26 222.3 27.2 308 630-972 65-392 (393)
52 3cai_A Possible aminotransfera 99.9 2.3E-21 8E-26 223.2 27.3 306 630-970 67-404 (406)
53 1iug_A Putative aspartate amin 99.9 3.6E-21 1.2E-25 216.8 27.2 304 630-975 32-348 (352)
54 3cai_A Possible aminotransfera 99.9 1.2E-20 4.1E-25 217.2 32.0 294 208-529 66-404 (406)
55 1t3i_A Probable cysteine desul 99.9 1.8E-20 6E-25 216.4 33.0 303 210-529 71-408 (420)
56 3ke3_A Putative serine-pyruvat 99.9 2.1E-21 7.3E-26 222.1 24.1 316 629-976 32-377 (379)
57 1js3_A DDC;, DOPA decarboxylas 99.9 2.2E-20 7.6E-25 220.9 31.3 356 140-529 45-469 (486)
58 3hbx_A GAD 1, glutamate decarb 99.9 2.3E-19 7.8E-24 212.9 39.9 355 139-529 30-439 (502)
59 2e7j_A SEP-tRNA:Cys-tRNA synth 99.9 2.9E-21 9.9E-26 219.3 18.9 298 633-974 54-369 (371)
60 3hl2_A O-phosphoseryl-tRNA(SEC 99.9 6.6E-20 2.2E-24 207.0 28.6 364 560-977 40-463 (501)
61 3e77_A Phosphoserine aminotran 99.9 2.2E-20 7.4E-25 212.2 24.9 315 179-529 23-370 (377)
62 3isl_A Purine catabolism prote 99.9 6.3E-20 2.1E-24 211.7 29.2 331 171-529 15-385 (416)
63 2w8t_A SPT, serine palmitoyltr 99.9 4.3E-20 1.5E-24 214.8 27.5 298 628-976 105-416 (427)
64 1rv3_A Serine hydroxymethyltra 99.9 3E-20 1E-24 219.5 25.9 313 628-974 86-430 (483)
65 1c4k_A Protein (ornithine deca 99.9 1.2E-20 4.1E-25 231.0 22.8 330 168-529 115-561 (730)
66 3vax_A Putative uncharacterize 99.9 2.5E-20 8.5E-25 214.0 24.1 306 629-973 60-398 (400)
67 3ly1_A Putative histidinol-pho 99.9 1.3E-19 4.3E-24 204.7 29.2 285 634-973 53-350 (354)
68 2dr1_A PH1308 protein, 386AA l 99.9 3.6E-19 1.2E-23 203.0 33.2 336 150-529 7-374 (386)
69 3nnk_A Ureidoglycine-glyoxylat 99.9 9.4E-20 3.2E-24 209.9 28.6 330 170-529 16-385 (411)
70 1qz9_A Kynureninase; kynurenin 99.9 5.7E-20 1.9E-24 212.3 26.7 303 632-975 71-402 (416)
71 4eb5_A Probable cysteine desul 99.9 4.5E-19 1.5E-23 201.9 33.8 291 206-529 38-368 (382)
72 3ke3_A Putative serine-pyruvat 99.9 1.4E-20 4.7E-25 215.4 21.2 292 209-529 33-371 (379)
73 1iug_A Putative aspartate amin 99.9 3.1E-19 1.1E-23 200.9 31.6 318 171-529 5-343 (352)
74 3zrp_A Serine-pyruvate aminotr 99.9 1.4E-19 4.8E-24 206.1 29.0 321 171-529 6-358 (384)
75 2bkw_A Alanine-glyoxylate amin 99.8 5.2E-20 1.8E-24 209.9 25.4 314 632-973 38-382 (385)
76 3ffh_A Histidinol-phosphate am 99.8 9.2E-20 3.1E-24 206.7 27.1 284 634-971 69-362 (363)
77 3f0h_A Aminotransferase; RER07 99.8 1.6E-19 5.5E-24 205.4 28.7 324 171-529 23-369 (376)
78 3tqx_A 2-amino-3-ketobutyrate 99.8 1.9E-20 6.3E-25 214.9 20.8 294 631-975 87-396 (399)
79 3lvm_A Cysteine desulfurase; s 99.8 8.1E-19 2.8E-23 203.1 34.5 328 166-529 24-394 (423)
80 3ffr_A Phosphoserine aminotran 99.8 7.9E-21 2.7E-25 214.7 17.0 305 629-972 40-361 (362)
81 1j32_A Aspartate aminotransfer 99.8 7.9E-20 2.7E-24 209.2 25.1 303 628-975 67-387 (388)
82 1eg5_A Aminotransferase; PLP-d 99.8 1.4E-18 4.6E-23 197.9 34.3 289 207-529 40-371 (384)
83 4e1o_A HDC, histidine decarbox 99.8 1.1E-18 3.9E-23 206.0 33.8 358 139-529 49-473 (481)
84 2yrr_A Aminotransferase, class 99.8 2.4E-19 8.1E-24 201.6 26.3 318 171-529 4-348 (353)
85 2a7v_A Serine hydroxymethyltra 99.8 6.1E-20 2.1E-24 215.5 22.2 298 635-974 103-440 (490)
86 3qm2_A Phosphoserine aminotran 99.8 9.3E-20 3.2E-24 208.1 22.7 318 170-529 30-380 (386)
87 3e77_A Phosphoserine aminotran 99.8 2.2E-20 7.5E-25 212.1 17.0 304 628-974 54-374 (377)
88 3get_A Histidinol-phosphate am 99.8 6E-20 2.1E-24 208.4 20.4 280 636-972 69-364 (365)
89 3k40_A Aromatic-L-amino-acid d 99.8 1.2E-18 4.3E-23 205.2 32.2 356 139-529 44-466 (475)
90 3dzz_A Putative pyridoxal 5'-p 99.8 1.1E-19 3.7E-24 207.9 22.4 300 631-974 65-388 (391)
91 3ou5_A Serine hydroxymethyltra 99.8 1.2E-19 4.3E-24 203.8 21.7 303 637-973 105-439 (490)
92 3a9z_A Selenocysteine lyase; P 99.8 8.7E-19 3E-23 203.6 29.8 318 628-976 57-429 (432)
93 3euc_A Histidinol-phosphate am 99.8 2.3E-19 7.7E-24 203.8 24.3 285 634-972 69-365 (367)
94 2z9v_A Aspartate aminotransfer 99.8 3.6E-19 1.2E-23 203.8 25.8 297 209-529 40-366 (392)
95 1c4k_A Protein (ornithine deca 99.8 2.9E-19 9.8E-24 218.9 26.1 314 633-976 174-567 (730)
96 2fnu_A Aminotransferase; prote 99.8 8.2E-20 2.8E-24 207.7 19.9 309 633-975 33-372 (375)
97 1v2d_A Glutamine aminotransfer 99.8 1.4E-19 4.9E-24 206.6 22.0 292 634-976 63-372 (381)
98 2bwn_A 5-aminolevulinate synth 99.8 3.9E-19 1.3E-23 204.4 25.2 293 633-974 92-399 (401)
99 1bs0_A Protein (8-amino-7-oxon 99.8 1.3E-19 4.5E-24 207.1 21.0 289 632-971 84-383 (384)
100 1gd9_A Aspartate aminotransfer 99.8 2.1E-19 7.4E-24 205.6 22.6 300 628-974 63-385 (389)
101 3vax_A Putative uncharacterize 99.8 8.1E-19 2.8E-23 201.4 27.4 292 205-529 57-395 (400)
102 3n0l_A Serine hydroxymethyltra 99.8 4.2E-19 1.5E-23 204.9 25.1 300 630-974 69-388 (417)
103 3ffr_A Phosphoserine aminotran 99.8 3.4E-19 1.2E-23 201.2 23.4 296 208-528 40-358 (362)
104 1fc4_A 2-amino-3-ketobutyrate 99.8 1.6E-19 5.3E-24 207.7 20.7 292 632-975 90-397 (401)
105 1b5p_A Protein (aspartate amin 99.8 4.2E-19 1.4E-23 203.3 24.0 300 628-973 68-383 (385)
106 3nra_A Aspartate aminotransfer 99.8 1.6E-19 5.6E-24 207.7 20.4 303 628-976 78-406 (407)
107 4dq6_A Putative pyridoxal phos 99.8 5.3E-19 1.8E-23 202.2 24.4 296 631-972 70-390 (391)
108 3a2b_A Serine palmitoyltransfe 99.8 2.3E-19 7.9E-24 206.1 21.1 295 628-975 84-392 (398)
109 2dkj_A Serine hydroxymethyltra 99.8 4.2E-19 1.4E-23 204.3 23.1 292 637-974 74-387 (407)
110 3kki_A CAI-1 autoinducer synth 99.8 3E-19 1E-23 206.1 22.0 285 634-974 106-403 (409)
111 2dou_A Probable N-succinyldiam 99.8 2.9E-19 9.7E-24 203.7 21.3 296 628-971 63-374 (376)
112 3g0t_A Putative aminotransfera 99.8 6.8E-19 2.3E-23 204.7 24.9 315 628-974 82-436 (437)
113 3qm2_A Phosphoserine aminotran 99.8 2.4E-20 8.1E-25 213.0 11.9 299 630-974 70-384 (386)
114 3m5u_A Phosphoserine aminotran 99.8 9.2E-19 3.1E-23 198.1 24.5 315 171-529 9-355 (361)
115 2huf_A Alanine glyoxylate amin 99.8 1.5E-18 5E-23 198.8 26.5 319 178-529 28-378 (393)
116 2vyc_A Biodegradative arginine 99.8 7.5E-19 2.6E-23 217.1 25.1 305 633-976 206-606 (755)
117 2vi8_A Serine hydroxymethyltra 99.8 5.9E-19 2E-23 202.9 22.6 299 631-974 68-386 (405)
118 1v72_A Aldolase; PLP-dependent 99.8 4.1E-19 1.4E-23 200.2 20.5 291 633-975 44-353 (356)
119 2z61_A Probable aspartate amin 99.8 7.7E-19 2.6E-23 199.7 22.8 289 628-973 66-369 (370)
120 1o4s_A Aspartate aminotransfer 99.8 9.5E-19 3.3E-23 200.6 23.4 293 628-973 78-387 (389)
121 2qma_A Diaminobutyrate-pyruvat 99.8 1.4E-17 4.9E-22 197.4 34.0 358 140-529 72-491 (497)
122 2cb1_A O-acetyl homoserine sul 99.8 5.8E-18 2E-22 195.9 29.7 296 213-529 58-411 (412)
123 3ele_A Amino transferase; RER0 99.8 1.9E-18 6.4E-23 198.4 25.4 300 628-976 76-397 (398)
124 2gb3_A Aspartate aminotransfer 99.8 8.6E-19 3E-23 202.4 22.6 299 628-976 79-403 (409)
125 3l8a_A METC, putative aminotra 99.8 1.1E-18 3.8E-23 202.3 23.6 299 631-973 99-420 (421)
126 3dyd_A Tyrosine aminotransfera 99.8 1.5E-18 5.3E-23 201.6 24.7 301 634-976 98-425 (427)
127 3kgw_A Alanine-glyoxylate amin 99.8 2.1E-18 7.3E-23 197.0 25.5 320 177-529 31-383 (393)
128 3gbx_A Serine hydroxymethyltra 99.8 7.7E-19 2.6E-23 202.8 21.9 297 633-974 77-395 (420)
129 1svv_A Threonine aldolase; str 99.8 5.4E-19 1.8E-23 199.3 19.9 293 629-974 46-357 (359)
130 1u08_A Hypothetical aminotrans 99.8 8.7E-19 3E-23 200.5 21.6 297 628-970 67-385 (386)
131 3cq5_A Histidinol-phosphate am 99.8 5.9E-18 2E-22 192.5 28.4 285 632-973 73-366 (369)
132 3tfu_A Adenosylmethionine-8-am 99.8 8.8E-19 3E-23 205.5 22.0 298 633-975 119-453 (457)
133 2c81_A Glutamine-2-deoxy-scyll 99.8 4.4E-19 1.5E-23 205.4 19.2 312 633-974 43-413 (418)
134 1yiz_A Kynurenine aminotransfe 99.8 1.8E-18 6.1E-23 200.9 24.3 303 628-972 77-426 (429)
135 1fg7_A Histidinol phosphate am 99.8 3.9E-18 1.3E-22 193.2 26.5 280 635-971 61-354 (356)
136 3p1t_A Putative histidinol-pho 99.8 2.7E-18 9.2E-23 192.2 24.8 277 634-973 53-335 (337)
137 2ch1_A 3-hydroxykynurenine tra 99.8 5.7E-18 2E-22 194.0 28.0 323 177-529 26-378 (396)
138 3hdo_A Histidinol-phosphate am 99.8 6.6E-19 2.3E-23 199.6 19.6 280 635-974 68-354 (360)
139 3frk_A QDTB; aminotransferase, 99.8 2.7E-19 9.2E-24 203.8 16.5 296 633-974 37-367 (373)
140 2o0r_A RV0858C (N-succinyldiam 99.8 6.5E-19 2.2E-23 203.5 19.8 302 628-975 62-396 (411)
141 3uwc_A Nucleotide-sugar aminot 99.8 7.3E-19 2.5E-23 200.0 19.8 297 633-974 39-370 (374)
142 3h14_A Aminotransferase, class 99.8 3.5E-18 1.2E-22 195.8 25.5 348 571-975 17-382 (391)
143 3h7f_A Serine hydroxymethyltra 99.8 5.7E-18 1.9E-22 198.1 27.1 296 633-974 91-413 (447)
144 3hmu_A Aminotransferase, class 99.8 1.5E-17 5.3E-22 195.7 30.8 303 632-976 99-453 (472)
145 3kax_A Aminotransferase, class 99.8 2.7E-18 9.4E-23 195.6 23.5 297 632-972 63-382 (383)
146 2oat_A Ornithine aminotransfer 99.8 1E-17 3.6E-22 195.4 28.9 290 634-973 120-437 (439)
147 1vjo_A Alanine--glyoxylate ami 99.8 1.4E-17 4.7E-22 190.7 28.7 313 178-528 43-389 (393)
148 3ecd_A Serine hydroxymethyltra 99.8 3E-18 1E-22 198.1 23.4 294 637-975 83-397 (425)
149 1bw0_A TAT, protein (tyrosine 99.8 3E-18 1E-22 198.1 22.9 302 636-975 79-413 (416)
150 3ezs_A Aminotransferase ASPB; 99.8 3.8E-18 1.3E-22 194.2 23.4 325 590-973 24-373 (376)
151 1b9h_A AHBA synthase, protein 99.8 3.1E-18 1.1E-22 196.0 22.8 305 634-974 40-387 (388)
152 3dr4_A Putative perosamine syn 99.8 8.8E-19 3E-23 200.9 18.2 301 633-971 57-389 (391)
153 2c0r_A PSAT, phosphoserine ami 99.8 3E-18 1E-22 194.2 21.9 297 629-974 46-360 (362)
154 3ftb_A Histidinol-phosphate am 99.8 4.4E-18 1.5E-22 192.4 23.2 283 634-973 63-359 (361)
155 2pb2_A Acetylornithine/succiny 99.8 2E-17 6.9E-22 191.8 29.3 292 633-975 100-418 (420)
156 2fq6_A Cystathionine beta-lyas 99.8 2.4E-17 8.2E-22 190.5 29.7 273 214-529 85-413 (415)
157 3op7_A Aminotransferase class 99.8 3.4E-18 1.2E-22 194.6 22.3 294 635-975 66-371 (375)
158 1xi9_A Putative transaminase; 99.8 2.2E-18 7.5E-23 198.7 20.8 303 628-975 78-403 (406)
159 2zyj_A Alpha-aminodipate amino 99.8 1.5E-18 5.3E-23 199.3 19.4 297 634-976 76-394 (397)
160 3jtx_A Aminotransferase; NP_28 99.8 6.1E-18 2.1E-22 193.9 24.0 327 589-971 30-394 (396)
161 3fvs_A Kynurenine--oxoglutarat 99.8 3E-18 1E-22 198.4 21.5 338 590-973 29-420 (422)
162 1pff_A Methionine gamma-lyase; 99.8 7.1E-18 2.4E-22 188.7 23.9 280 636-971 2-330 (331)
163 1qgn_A Protein (cystathionine 99.8 5.4E-18 1.9E-22 197.4 23.5 281 632-974 114-444 (445)
164 1o69_A Aminotransferase; struc 99.8 7.3E-18 2.5E-22 193.7 24.1 308 633-973 33-385 (394)
165 2oga_A Transaminase; PLP-depen 99.8 2.7E-18 9.2E-23 197.6 20.3 298 633-974 64-395 (399)
166 2x5d_A Probable aminotransfera 99.8 9.8E-18 3.3E-22 193.7 24.7 301 628-976 75-399 (412)
167 3b46_A Aminotransferase BNA3; 99.8 3.3E-18 1.1E-22 200.1 20.7 301 628-970 95-442 (447)
168 1vp4_A Aminotransferase, putat 99.8 6.4E-18 2.2E-22 196.2 22.9 308 628-978 85-421 (425)
169 2o1b_A Aminotransferase, class 99.8 3.4E-18 1.2E-22 197.1 20.4 298 628-973 85-401 (404)
170 2x3l_A ORN/Lys/Arg decarboxyla 99.8 2E-18 7E-23 201.7 18.7 284 633-973 58-351 (446)
171 2w8t_A SPT, serine palmitoyltr 99.8 1.7E-17 5.8E-22 192.8 26.3 277 206-529 104-410 (427)
172 2zc0_A Alanine glyoxylate tran 99.8 1.3E-17 4.6E-22 191.9 25.2 303 628-975 75-404 (407)
173 4adb_A Succinylornithine trans 99.8 3.1E-17 1.1E-21 188.7 28.1 295 633-977 82-402 (406)
174 1mdo_A ARNB aminotransferase; 99.8 4E-18 1.4E-22 195.2 20.5 307 634-974 41-385 (393)
175 1z7d_A Ornithine aminotransfer 99.8 8.9E-17 3.1E-21 187.1 31.7 292 633-975 108-429 (433)
176 2e7j_A SEP-tRNA:Cys-tRNA synth 99.8 3.5E-18 1.2E-22 193.9 19.3 280 208-529 50-365 (371)
177 1c7n_A Cystalysin; transferase 99.8 2.2E-17 7.6E-22 189.5 26.2 302 632-977 70-395 (399)
178 3piu_A 1-aminocyclopropane-1-c 99.8 1.5E-17 5.3E-22 193.5 25.0 301 636-976 90-433 (435)
179 1e5e_A MGL, methionine gamma-l 99.8 2.9E-17 1E-21 189.4 26.7 284 633-976 63-396 (404)
180 3ruy_A Ornithine aminotransfer 99.8 6.9E-17 2.4E-21 185.1 29.6 287 633-972 79-391 (392)
181 2po3_A 4-dehydrase; external a 99.8 1.3E-17 4.6E-22 193.4 23.9 304 634-976 54-387 (424)
182 2bkw_A Alanine-glyoxylate amin 99.8 2E-17 6.9E-22 188.4 24.9 320 172-529 10-379 (385)
183 3get_A Histidinol-phosphate am 99.8 7.3E-17 2.5E-21 182.9 29.3 297 172-528 36-361 (365)
184 2cb1_A O-acetyl homoserine sul 99.8 1.3E-17 4.5E-22 192.9 23.2 296 633-970 57-411 (412)
185 3nx3_A Acoat, acetylornithine 99.8 3.1E-17 1.1E-21 188.2 26.1 287 632-973 78-393 (395)
186 3m5u_A Phosphoserine aminotran 99.8 1.7E-18 5.7E-23 195.9 15.1 296 629-974 47-359 (361)
187 3qhx_A Cystathionine gamma-syn 99.8 1.1E-17 3.7E-22 192.3 22.1 283 633-968 67-391 (392)
188 1m32_A 2-aminoethylphosphonate 99.8 1.7E-17 5.8E-22 187.4 23.4 318 172-529 9-360 (366)
189 1jg8_A L-ALLO-threonine aldola 99.8 1.7E-18 6E-23 194.7 14.9 288 634-974 40-345 (347)
190 2x5f_A Aspartate_tyrosine_phen 99.8 3.3E-17 1.1E-21 190.3 25.8 298 636-975 92-429 (430)
191 2ord_A Acoat, acetylornithine 99.8 1E-16 3.6E-21 184.0 29.5 287 633-974 83-396 (397)
192 1iay_A ACC synthase 2, 1-amino 99.8 2.2E-17 7.5E-22 191.7 24.0 305 629-974 84-426 (428)
193 1gc0_A Methionine gamma-lyase; 99.8 2.7E-17 9.2E-22 189.3 24.5 285 632-971 65-397 (398)
194 3ez1_A Aminotransferase MOCR f 99.8 5.8E-17 2E-21 187.7 27.5 302 634-977 72-417 (423)
195 1pff_A Methionine gamma-lyase; 99.8 1.9E-17 6.5E-22 185.2 22.6 273 215-529 2-329 (331)
196 2rfv_A Methionine gamma-lyase; 99.8 1.9E-17 6.5E-22 190.5 23.2 163 632-817 64-231 (398)
197 1gc0_A Methionine gamma-lyase; 99.8 9.9E-17 3.4E-21 184.6 29.1 276 211-528 65-395 (398)
198 3i5t_A Aminotransferase; pyrid 99.8 6E-17 2.1E-21 190.9 27.9 313 632-978 97-457 (476)
199 2r2n_A Kynurenine/alpha-aminoa 99.8 4.4E-17 1.5E-21 189.2 26.2 305 627-974 77-423 (425)
200 3e2y_A Kynurenine-oxoglutarate 99.8 6E-18 2E-22 194.9 18.7 331 590-970 24-408 (410)
201 3tqx_A 2-amino-3-ketobutyrate 99.8 4E-17 1.4E-21 187.1 25.1 277 207-529 84-391 (399)
202 2eh6_A Acoat, acetylornithine 99.8 6.9E-17 2.4E-21 183.7 26.7 279 634-971 72-374 (375)
203 3aow_A Putative uncharacterize 99.8 4.2E-17 1.4E-21 190.8 25.5 306 628-976 118-446 (448)
204 3qhx_A Cystathionine gamma-syn 99.8 8.1E-17 2.8E-21 185.0 27.4 273 213-528 68-392 (392)
205 3fdb_A Beta C-S lyase, putativ 99.8 1.2E-17 4.1E-22 190.0 20.1 293 633-973 63-374 (377)
206 3ffh_A Histidinol-phosphate am 99.8 4.2E-16 1.4E-20 176.5 32.7 297 172-528 38-360 (363)
207 3a9z_A Selenocysteine lyase; P 99.8 1E-16 3.4E-21 186.2 28.0 293 205-529 55-423 (432)
208 3frk_A QDTB; aminotransferase, 99.8 6.5E-17 2.2E-21 184.1 25.7 279 212-530 37-364 (373)
209 3gju_A Putative aminotransfera 99.8 2.5E-16 8.7E-21 184.8 31.4 307 632-976 95-457 (460)
210 3n75_A LDC, lysine decarboxyla 99.8 3.5E-17 1.2E-21 198.8 24.5 301 633-976 196-561 (715)
211 1s0a_A Adenosylmethionine-8-am 99.8 1.6E-16 5.3E-21 184.6 29.1 300 634-974 88-423 (429)
212 1cs1_A CGS, protein (cystathio 99.8 6.9E-17 2.4E-21 184.9 25.7 282 633-971 53-383 (386)
213 3b8x_A WBDK, pyridoxamine 5-ph 99.8 1E-16 3.4E-21 183.8 27.0 307 633-968 35-389 (390)
214 3i16_A Aluminum resistance pro 99.7 6.9E-18 2.4E-22 195.0 16.4 309 108-495 4-355 (427)
215 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.7 8.4E-17 2.9E-21 187.5 25.4 316 633-972 63-433 (437)
216 3ju7_A Putative PLP-dependent 99.7 2.9E-17 9.9E-22 187.7 21.0 302 633-974 37-374 (377)
217 3acz_A Methionine gamma-lyase; 99.7 1.3E-16 4.5E-21 183.0 26.5 273 213-528 61-387 (389)
218 3rq1_A Aminotransferase class 99.7 3.5E-17 1.2E-21 189.3 21.8 301 628-975 80-415 (418)
219 4ao9_A Beta-phenylalanine amin 99.7 3.7E-17 1.3E-21 189.6 21.9 293 635-977 130-448 (454)
220 1vef_A Acetylornithine/acetyl- 99.7 1.1E-16 3.8E-21 183.6 25.7 281 633-972 88-394 (395)
221 1fc4_A 2-amino-3-ketobutyrate 99.7 1.2E-16 4.1E-21 183.5 26.0 273 210-529 89-392 (401)
222 2bwn_A 5-aminolevulinate synth 99.7 1.5E-16 5.2E-21 182.8 26.5 274 211-529 91-395 (401)
223 1qgn_A Protein (cystathionine 99.7 8.9E-17 3E-21 187.1 24.7 267 213-529 116-440 (445)
224 2x3l_A ORN/Lys/Arg decarboxyla 99.7 2E-17 6.8E-22 193.4 18.8 271 212-529 58-348 (446)
225 3dxv_A Alpha-amino-epsilon-cap 99.7 1.7E-16 5.7E-21 185.0 26.6 300 632-976 86-426 (439)
226 1lc5_A COBD, L-threonine-O-3-p 99.7 6.2E-17 2.1E-21 183.6 22.3 286 634-975 61-360 (364)
227 3n5m_A Adenosylmethionine-8-am 99.7 1.4E-15 4.8E-20 178.0 34.2 310 632-973 91-450 (452)
228 3nyt_A Aminotransferase WBPE; 99.7 1.9E-17 6.5E-22 188.2 17.8 295 634-971 37-360 (367)
229 1cs1_A CGS, protein (cystathio 99.7 1.2E-16 4E-21 183.1 24.4 274 213-529 54-382 (386)
230 3i16_A Aluminum resistance pro 99.7 4.5E-17 1.5E-21 188.2 20.9 260 634-933 75-358 (427)
231 2fq6_A Cystathionine beta-lyas 99.7 1.7E-17 5.9E-22 191.8 17.4 283 633-970 83-413 (415)
232 3ppl_A Aspartate aminotransfer 99.7 8.6E-17 3E-21 186.7 23.3 303 634-976 80-421 (427)
233 1d2f_A MALY protein; aminotran 99.7 1.8E-16 6.2E-21 181.4 25.7 300 633-975 69-389 (390)
234 4a6r_A Omega transaminase; tra 99.7 3.9E-16 1.3E-20 183.2 29.0 302 632-977 94-451 (459)
235 1w23_A Phosphoserine aminotran 99.7 1.9E-17 6.7E-22 187.0 17.2 304 628-974 44-359 (360)
236 3acz_A Methionine gamma-lyase; 99.7 6.8E-17 2.3E-21 185.4 21.8 164 633-819 60-229 (389)
237 2vyc_A Biodegradative arginine 99.7 4.2E-17 1.5E-21 201.4 21.4 280 211-529 205-600 (755)
238 3dod_A Adenosylmethionine-8-am 99.7 1.1E-15 3.8E-20 178.6 31.8 312 632-977 87-445 (448)
239 3if2_A Aminotransferase; YP_26 99.7 4.4E-17 1.5E-21 190.0 19.7 307 628-977 83-442 (444)
240 3bc8_A O-phosphoseryl-tRNA(SEC 99.7 2.4E-16 8.2E-21 181.0 24.8 342 140-529 22-438 (450)
241 3ly1_A Putative histidinol-pho 99.7 1.3E-15 4.3E-20 171.8 30.3 297 173-529 23-347 (354)
242 2rfv_A Methionine gamma-lyase; 99.7 5.3E-16 1.8E-20 178.4 27.3 276 211-528 64-394 (398)
243 3jzl_A Putative cystathionine 99.7 7.3E-17 2.5E-21 185.8 19.7 258 634-932 61-340 (409)
244 2z61_A Probable aspartate amin 99.7 4.6E-16 1.6E-20 176.8 26.1 270 215-529 70-366 (370)
245 3kki_A CAI-1 autoinducer synth 99.7 5.7E-17 1.9E-21 187.0 18.6 273 208-529 101-399 (409)
246 4e3q_A Pyruvate transaminase; 99.7 4E-16 1.4E-20 182.4 25.3 308 634-976 113-469 (473)
247 2c0r_A PSAT, phosphoserine ami 99.7 1.3E-15 4.5E-20 172.4 28.8 316 170-529 7-356 (362)
248 2fnu_A Aminotransferase; prote 99.7 5.4E-16 1.9E-20 176.0 25.7 280 212-529 33-367 (375)
249 4atq_A 4-aminobutyrate transam 99.7 8.1E-16 2.8E-20 179.1 27.5 295 634-974 109-454 (456)
250 3hdo_A Histidinol-phosphate am 99.7 2E-15 6.9E-20 170.8 30.1 266 214-529 68-350 (360)
251 3cog_A Cystathionine gamma-lya 99.7 2.9E-16 1E-20 181.0 23.2 282 634-972 69-399 (403)
252 1svv_A Threonine aldolase; str 99.7 2.8E-16 9.5E-21 177.0 22.5 278 208-529 46-353 (359)
253 1v2d_A Glutamine aminotransfer 99.7 1.5E-15 5.2E-20 173.2 28.8 271 214-529 64-366 (381)
254 3d6k_A Putative aminotransfera 99.7 3.6E-16 1.2E-20 181.3 23.9 302 634-976 78-419 (422)
255 3uwc_A Nucleotide-sugar aminot 99.7 1.1E-15 3.8E-20 173.7 27.1 278 213-529 40-366 (374)
256 2cjg_A L-lysine-epsilon aminot 99.7 8.6E-16 2.9E-20 179.7 26.8 299 633-975 102-448 (449)
257 3i4j_A Aminotransferase, class 99.7 7.8E-16 2.7E-20 178.8 26.1 313 632-975 72-428 (430)
258 2ctz_A O-acetyl-L-homoserine s 99.7 3.9E-16 1.3E-20 181.1 23.5 295 212-527 59-420 (421)
259 1n8p_A Cystathionine gamma-lya 99.7 7.6E-17 2.6E-21 185.3 17.3 279 633-971 56-391 (393)
260 1j32_A Aspartate aminotransfer 99.7 3.3E-15 1.1E-19 170.7 30.9 324 153-529 18-382 (388)
261 1n8p_A Cystathionine gamma-lya 99.7 7.3E-16 2.5E-20 177.1 25.4 270 212-528 56-389 (393)
262 4ffc_A 4-aminobutyrate aminotr 99.7 1.5E-15 5E-20 177.9 28.4 296 632-976 107-450 (453)
263 3a2b_A Serine palmitoyltransfe 99.7 9.4E-16 3.2E-20 176.0 26.1 275 207-529 84-387 (398)
264 3cog_A Cystathionine gamma-lya 99.7 9E-16 3.1E-20 176.9 26.0 273 213-529 69-397 (403)
265 1e5e_A MGL, methionine gamma-l 99.7 3.3E-15 1.1E-19 172.3 30.7 271 213-529 64-390 (404)
266 1sff_A 4-aminobutyrate aminotr 99.7 1E-15 3.5E-20 177.3 26.3 299 633-975 85-424 (426)
267 3ndn_A O-succinylhomoserine su 99.7 2.6E-16 8.8E-21 182.0 21.1 211 633-889 82-298 (414)
268 3euc_A Histidinol-phosphate am 99.7 1E-15 3.4E-20 173.6 25.6 266 214-529 70-363 (367)
269 3qgu_A LL-diaminopimelate amin 99.7 3E-16 1E-20 183.3 21.8 294 635-974 114-439 (449)
270 3t18_A Aminotransferase class 99.7 1.5E-16 5.1E-21 183.7 18.8 297 628-971 79-410 (413)
271 3l44_A Glutamate-1-semialdehyd 99.7 1.8E-15 6.2E-20 175.9 27.8 291 633-977 96-432 (434)
272 3ri6_A O-acetylhomoserine sulf 99.7 4.2E-16 1.4E-20 180.8 21.8 291 213-527 84-429 (430)
273 3ndn_A O-succinylhomoserine su 99.7 1E-15 3.5E-20 176.9 24.5 271 214-527 84-413 (414)
274 3g0t_A Putative aminotransfera 99.7 5.1E-15 1.7E-19 172.0 30.4 324 172-529 50-432 (437)
275 3p1t_A Putative histidinol-pho 99.7 1.5E-14 5.2E-19 161.6 32.9 295 171-529 21-332 (337)
276 3a8u_X Omega-amino acid--pyruv 99.7 2.8E-15 9.5E-20 175.2 27.9 311 632-974 93-446 (449)
277 1bs0_A Protein (8-amino-7-oxon 99.7 2E-15 6.7E-20 172.3 26.0 273 211-528 84-381 (384)
278 2eo5_A 419AA long hypothetical 99.7 3.8E-15 1.3E-19 172.5 28.8 285 633-974 87-417 (419)
279 3oks_A 4-aminobutyrate transam 99.7 1.5E-15 5.2E-20 177.7 25.6 299 632-973 104-449 (451)
280 3dr4_A Putative perosamine syn 99.7 1E-15 3.4E-20 175.4 23.6 277 213-529 58-388 (391)
281 2fyf_A PSAT, phosphoserine ami 99.7 4.4E-16 1.5E-20 179.0 20.1 299 630-973 76-396 (398)
282 2ctz_A O-acetyl-L-homoserine s 99.7 1.5E-15 5.2E-20 176.0 24.8 145 633-797 59-210 (421)
283 3k28_A Glutamate-1-semialdehyd 99.7 4.9E-16 1.7E-20 180.6 20.5 287 633-974 94-426 (429)
284 1w23_A Phosphoserine aminotran 99.7 3.1E-15 1.1E-19 168.9 26.6 320 171-529 7-355 (360)
285 2gb3_A Aspartate aminotransfer 99.7 7.4E-15 2.5E-19 169.3 30.2 319 153-529 31-397 (409)
286 3f6t_A Aspartate aminotransfer 99.7 6E-16 2.1E-20 184.8 21.7 327 628-977 138-527 (533)
287 4e77_A Glutamate-1-semialdehyd 99.7 1.4E-15 4.8E-20 176.6 24.0 290 633-973 94-427 (429)
288 3dzz_A Putative pyridoxal 5'-p 99.7 6.8E-15 2.3E-19 168.0 29.2 274 213-529 68-384 (391)
289 2eh6_A Acoat, acetylornithine 99.7 4.5E-15 1.6E-19 168.6 27.5 270 214-528 73-372 (375)
290 3hvy_A Cystathionine beta-lyas 99.7 4.4E-16 1.5E-20 179.9 19.1 259 634-931 76-356 (427)
291 3tcm_A Alanine aminotransferas 99.7 1.9E-15 6.5E-20 179.2 25.1 313 627-977 133-496 (500)
292 3jzl_A Putative cystathionine 99.7 1E-15 3.5E-20 176.3 21.9 246 213-496 61-339 (409)
293 4f4e_A Aromatic-amino-acid ami 99.7 4.3E-16 1.5E-20 180.4 18.8 275 652-972 121-419 (420)
294 1mdo_A ARNB aminotransferase; 99.7 1.3E-15 4.4E-20 174.3 22.6 285 212-529 40-381 (393)
295 7aat_A Aspartate aminotransfer 99.7 1.2E-15 4.2E-20 175.2 22.2 288 636-972 75-400 (401)
296 3fq8_A Glutamate-1-semialdehyd 99.7 4.3E-15 1.5E-19 172.3 26.6 291 633-974 93-426 (427)
297 1lc5_A COBD, L-threonine-O-3-p 99.7 1.2E-14 4E-19 164.8 29.6 264 214-529 62-355 (364)
298 2dou_A Probable N-succinyldiam 99.7 2.9E-14 9.8E-19 162.2 32.7 321 152-529 12-373 (376)
299 1u08_A Hypothetical aminotrans 99.7 1.5E-14 5E-19 165.3 30.1 268 216-529 72-385 (386)
300 3ei9_A LL-diaminopimelate amin 99.7 4E-16 1.4E-20 181.3 17.2 291 636-972 102-425 (432)
301 3lws_A Aromatic amino acid bet 99.7 5.1E-16 1.7E-20 175.4 17.6 289 634-971 49-355 (357)
302 3g7q_A Valine-pyruvate aminotr 99.7 8.6E-16 3E-20 177.2 19.9 303 628-978 75-416 (417)
303 3fkd_A L-threonine-O-3-phospha 99.7 1.8E-15 6.3E-20 170.4 21.9 276 636-974 54-341 (350)
304 2aeu_A Hypothetical protein MJ 99.7 1.3E-15 4.6E-20 173.7 20.9 158 634-819 60-228 (374)
305 1ax4_A Tryptophanase; tryptoph 99.7 2.6E-15 8.8E-20 176.2 23.8 306 634-976 78-442 (467)
306 4dq6_A Putative pyridoxal phos 99.7 1.2E-14 4.2E-19 165.8 28.8 273 212-528 72-387 (391)
307 1ibj_A CBL, cystathionine beta 99.7 8.7E-16 3E-20 180.0 19.0 163 633-819 134-302 (464)
308 3cq5_A Histidinol-phosphate am 99.7 1.4E-14 4.8E-19 164.5 28.4 265 215-529 73-363 (369)
309 3nyt_A Aminotransferase WBPE; 99.7 3.5E-15 1.2E-19 169.4 23.2 277 213-530 37-360 (367)
310 3hl2_A O-phosphoseryl-tRNA(SEC 99.7 4.9E-14 1.7E-18 159.4 31.9 338 140-529 40-456 (501)
311 2ez2_A Beta-tyrosinase, tyrosi 99.7 1.3E-15 4.3E-20 178.4 20.0 300 634-976 77-432 (456)
312 1zod_A DGD, 2,2-dialkylglycine 99.7 2.2E-14 7.4E-19 166.7 30.2 301 633-975 86-432 (433)
313 3ht4_A Aluminum resistance pro 99.7 9.9E-16 3.4E-20 177.7 18.6 257 634-931 67-345 (431)
314 1o4s_A Aspartate aminotransfer 99.7 1.2E-14 3.9E-19 166.6 27.3 267 215-529 82-384 (389)
315 1uu1_A Histidinol-phosphate am 99.7 7.1E-16 2.4E-20 172.9 16.8 269 634-971 58-334 (335)
316 3nra_A Aspartate aminotransfer 99.7 2.3E-15 7.7E-20 173.0 21.4 276 208-529 79-400 (407)
317 3ftb_A Histidinol-phosphate am 99.7 1.5E-14 5E-19 163.4 27.2 261 214-528 64-355 (361)
318 3b8x_A WBDK, pyridoxamine 5-ph 99.7 1.8E-14 6.1E-19 165.0 28.2 296 212-528 35-390 (390)
319 1gd9_A Aspartate aminotransfer 99.7 2.5E-14 8.6E-19 163.4 29.3 269 215-529 67-381 (389)
320 2ay1_A Aroat, aromatic amino a 99.7 4.3E-16 1.5E-20 178.5 14.2 289 635-971 72-392 (394)
321 3n75_A LDC, lysine decarboxyla 99.7 1.4E-15 4.7E-20 184.8 19.3 275 211-529 195-555 (715)
322 1fg7_A Histidinol phosphate am 99.7 5.6E-14 1.9E-18 158.9 31.4 264 214-529 61-353 (356)
323 2o0r_A RV0858C (N-succinyldiam 99.6 3.1E-14 1.1E-18 164.1 29.6 269 216-529 67-391 (411)
324 2oga_A Transaminase; PLP-depen 99.6 1.4E-14 4.9E-19 166.4 26.6 278 213-529 65-391 (399)
325 1yiz_A Kynurenine aminotransfe 99.6 3.6E-14 1.2E-18 164.5 29.9 264 219-529 89-424 (429)
326 3nmy_A Xometc, cystathionine g 99.6 4.7E-15 1.6E-19 170.6 22.0 271 214-528 70-397 (400)
327 3ri6_A O-acetylhomoserine sulf 99.6 7.3E-15 2.5E-19 170.4 23.7 144 633-796 83-231 (430)
328 3fsl_A Aromatic-amino-acid ami 99.6 9.3E-16 3.2E-20 175.7 16.0 274 652-971 99-396 (397)
329 1xi9_A Putative transaminase; 99.6 1.7E-14 5.7E-19 166.1 26.2 269 216-529 83-398 (406)
330 1ajs_A Aspartate aminotransfer 99.6 2.2E-15 7.7E-20 173.6 18.7 290 635-974 77-410 (412)
331 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.6 1.7E-14 5.8E-19 168.0 25.9 298 212-529 63-431 (437)
332 1rv3_A Serine hydroxymethyltra 99.6 9.3E-16 3.2E-20 181.0 15.1 292 209-529 88-426 (483)
333 3op7_A Aminotransferase class 99.6 2.1E-14 7.3E-19 163.1 25.9 271 215-529 67-366 (375)
334 2fyf_A PSAT, phosphoserine ami 99.6 3.4E-14 1.1E-18 163.2 27.6 293 210-529 77-393 (398)
335 2vi8_A Serine hydroxymethyltra 99.6 3E-15 1E-19 171.9 18.6 274 215-529 73-382 (405)
336 3b46_A Aminotransferase BNA3; 99.6 4.2E-14 1.5E-18 165.1 28.5 302 172-529 63-442 (447)
337 3pj0_A LMO0305 protein; struct 99.6 1.2E-15 4E-20 172.4 14.5 291 633-970 49-357 (359)
338 2epj_A Glutamate-1-semialdehyd 99.6 3.6E-14 1.2E-18 164.9 27.4 291 633-975 97-431 (434)
339 3ezs_A Aminotransferase ASPB; 99.6 6.1E-14 2.1E-18 159.3 28.7 298 177-529 34-370 (376)
340 2dkj_A Serine hydroxymethyltra 99.6 3.2E-15 1.1E-19 171.7 18.3 271 216-529 74-383 (407)
341 2x5d_A Probable aminotransfera 99.6 1.3E-13 4.5E-18 159.0 31.7 270 215-529 79-393 (412)
342 2po3_A 4-dehydrase; external a 99.6 4.5E-14 1.5E-18 163.6 27.9 276 213-529 54-381 (424)
343 3dyd_A Tyrosine aminotransfera 99.6 3.5E-14 1.2E-18 164.8 26.9 272 214-529 99-419 (427)
344 1yaa_A Aspartate aminotransfer 99.6 2.2E-15 7.4E-20 173.9 16.5 287 636-974 77-410 (412)
345 1v72_A Aldolase; PLP-dependent 99.6 4.7E-14 1.6E-18 158.6 27.0 273 212-530 44-349 (356)
346 1ibj_A CBL, cystathionine beta 99.6 7.1E-15 2.4E-19 172.2 21.0 161 213-383 135-302 (464)
347 1b5p_A Protein (aspartate amin 99.6 1.8E-13 6.2E-18 156.3 32.2 324 151-529 17-380 (385)
348 3kax_A Aminotransferase, class 99.6 3.8E-14 1.3E-18 161.2 26.1 270 214-528 66-379 (383)
349 1uu1_A Histidinol-phosphate am 99.6 1E-13 3.5E-18 155.2 29.1 292 171-529 24-333 (335)
350 4eu1_A Mitochondrial aspartate 99.6 1.2E-14 3.9E-19 167.7 21.8 287 636-972 83-408 (409)
351 1b9h_A AHBA synthase, protein 99.6 3.5E-14 1.2E-18 162.3 25.6 280 213-529 40-383 (388)
352 3asa_A LL-diaminopimelate amin 99.6 3.6E-15 1.2E-19 171.4 17.4 295 635-975 78-393 (400)
353 3e2y_A Kynurenine-oxoglutarate 99.6 5.9E-14 2E-18 161.4 27.4 268 216-529 66-408 (410)
354 3ecd_A Serine hydroxymethyltra 99.6 2.8E-14 9.7E-19 164.7 24.7 273 216-529 83-392 (425)
355 3nmy_A Xometc, cystathionine g 99.6 3.7E-14 1.3E-18 163.1 25.3 210 633-889 68-285 (400)
356 3fvs_A Kynurenine--oxoglutarat 99.6 1.4E-13 4.6E-18 159.1 30.1 268 218-529 78-417 (422)
357 3ihj_A Alanine aminotransferas 99.6 1.9E-14 6.4E-19 170.5 23.3 313 628-977 129-495 (498)
358 3fkd_A L-threonine-O-3-phospha 99.6 3.2E-13 1.1E-17 152.0 32.4 296 173-529 22-337 (350)
359 2o1b_A Aminotransferase, class 99.6 3.1E-14 1.1E-18 164.0 24.5 270 215-529 89-398 (404)
360 3piu_A 1-aminocyclopropane-1-c 99.6 7.1E-14 2.4E-18 162.5 27.8 271 215-529 90-427 (435)
361 3ruy_A Ornithine aminotransfer 99.6 2.8E-14 9.6E-19 163.3 23.9 275 213-529 80-389 (392)
362 2q7w_A Aspartate aminotransfer 99.6 2.8E-15 9.4E-20 171.7 14.8 285 635-971 72-395 (396)
363 2cy8_A D-phgat, D-phenylglycin 99.6 1.7E-13 5.7E-18 160.3 30.1 301 632-984 97-444 (453)
364 3h14_A Aminotransferase, class 99.6 2.2E-13 7.4E-18 155.8 30.2 322 151-529 17-377 (391)
365 1ohv_A 4-aminobutyrate aminotr 99.6 5.4E-14 1.8E-18 165.4 25.7 293 633-974 111-470 (472)
366 3n0l_A Serine hydroxymethyltra 99.6 2.4E-14 8.2E-19 165.0 22.3 273 215-529 75-384 (417)
367 3gbx_A Serine hydroxymethyltra 99.6 1.2E-14 4.2E-19 167.5 19.7 274 214-529 79-391 (420)
368 2c81_A Glutamine-2-deoxy-scyll 99.6 4.8E-14 1.6E-18 163.0 24.8 290 210-529 41-409 (418)
369 3l8a_A METC, putative aminotra 99.6 7.2E-14 2.5E-18 161.8 26.2 313 166-529 62-417 (421)
370 3meb_A Aspartate aminotransfer 99.6 2.4E-14 8.2E-19 167.4 22.1 291 635-974 97-443 (448)
371 3ele_A Amino transferase; RER0 99.6 1.2E-13 4.2E-18 158.2 27.3 271 216-529 85-391 (398)
372 1iay_A ACC synthase 2, 1-amino 99.6 5.4E-14 1.8E-18 163.1 24.5 268 215-529 87-422 (428)
373 3fdb_A Beta C-S lyase, putativ 99.6 2.5E-14 8.5E-19 162.5 21.3 270 216-529 63-371 (377)
374 2zyj_A Alpha-aminodipate amino 99.6 2.2E-14 7.5E-19 164.6 20.4 272 214-529 77-388 (397)
375 3jtx_A Aminotransferase; NP_28 99.6 3.1E-13 1.1E-17 154.6 29.8 304 173-528 37-392 (396)
376 1o69_A Aminotransferase; struc 99.6 8.1E-14 2.8E-18 159.9 24.7 279 212-529 33-382 (394)
377 1bw0_A TAT, protein (tyrosine 99.6 1.1E-13 3.6E-18 159.8 25.8 275 215-529 79-408 (416)
378 3b1d_A Betac-S lyase; HET: PLP 99.4 1E-16 3.4E-21 183.9 0.0 299 632-973 70-391 (392)
379 3hvy_A Cystathionine beta-lyas 99.6 3.1E-14 1.1E-18 164.4 20.6 243 213-495 76-355 (427)
380 1jg8_A L-ALLO-threonine aldola 99.6 5.4E-14 1.8E-18 157.9 21.9 272 213-529 40-341 (347)
381 2yky_A Beta-transaminase; tran 99.4 1.2E-16 4.2E-21 186.5 0.0 341 569-977 95-462 (465)
382 2oqx_A Tryptophanase; lyase, p 99.6 7.2E-15 2.5E-19 172.4 14.8 305 634-976 76-443 (467)
383 1vef_A Acetylornithine/acetyl- 99.6 6.6E-14 2.3E-18 160.3 22.4 274 212-528 88-391 (395)
384 2a7v_A Serine hydroxymethyltra 99.6 4E-14 1.4E-18 166.2 20.1 286 215-529 104-436 (490)
385 3qgu_A LL-diaminopimelate amin 99.6 2.2E-13 7.4E-18 159.0 25.8 278 214-529 114-435 (449)
386 2zc0_A Alanine glyoxylate tran 99.6 1.5E-13 5E-18 158.0 23.7 270 215-529 79-399 (407)
387 1c7n_A Cystalysin; transferase 99.6 1.1E-12 3.7E-17 150.3 30.1 271 215-529 70-388 (399)
388 3ez1_A Aminotransferase MOCR f 99.6 4.1E-13 1.4E-17 155.3 26.3 329 149-529 10-410 (423)
389 4adb_A Succinylornithine trans 99.6 6.1E-13 2.1E-17 152.7 27.4 275 213-529 83-395 (406)
390 3ei9_A LL-diaminopimelate amin 99.5 2.3E-13 7.9E-18 157.9 23.4 281 215-530 102-424 (432)
391 2e7u_A Glutamate-1-semialdehyd 99.5 2.9E-13 9.8E-18 156.8 24.0 286 633-971 93-423 (424)
392 1vp4_A Aminotransferase, putat 99.5 1.7E-13 5.9E-18 158.7 21.8 270 216-529 90-413 (425)
393 1d2f_A MALY protein; aminotran 99.5 1.4E-12 4.8E-17 149.0 27.9 270 216-529 69-384 (390)
394 3aow_A Putative uncharacterize 99.5 6E-13 2E-17 155.5 25.2 271 215-529 122-440 (448)
395 2x5f_A Aspartate_tyrosine_phen 99.5 5.7E-13 1.9E-17 154.5 24.4 276 215-529 92-424 (430)
396 3nx3_A Acoat, acetylornithine 99.5 6.9E-12 2.3E-16 143.6 32.3 277 212-529 79-390 (395)
397 3ju7_A Putative PLP-dependent 99.5 1.5E-13 5.2E-18 156.8 17.9 278 213-530 38-371 (377)
398 3asa_A LL-diaminopimelate amin 99.5 2.4E-12 8.2E-17 147.8 27.8 330 151-530 17-389 (400)
399 3bwn_A AT1G70560, L-tryptophan 99.5 3E-14 1E-18 163.5 11.6 280 635-974 71-386 (391)
400 4a0g_A Adenosylmethionine-8-am 99.5 1.6E-13 5.6E-18 170.7 17.8 341 592-974 392-827 (831)
401 2ord_A Acoat, acetylornithine 99.5 4.7E-13 1.6E-17 153.4 20.3 274 213-529 84-392 (397)
402 3h7f_A Serine hydroxymethyltra 99.5 8.9E-13 3E-17 154.0 22.5 276 212-529 91-409 (447)
403 3ppl_A Aspartate aminotransfer 99.5 2.5E-12 8.4E-17 149.1 25.3 276 214-529 81-415 (427)
404 2aeu_A Hypothetical protein MJ 99.5 1.1E-12 3.8E-17 149.5 21.4 156 215-383 62-228 (374)
405 3ht4_A Aluminum resistance pro 99.5 8.7E-13 3E-17 153.0 20.3 245 213-495 67-344 (431)
406 3rq1_A Aminotransferase class 99.5 2.7E-12 9.2E-17 148.2 24.2 328 151-529 22-410 (418)
407 2pb2_A Acetylornithine/succiny 99.5 4.4E-12 1.5E-16 146.8 25.3 276 212-529 100-413 (420)
408 2zy4_A L-aspartate beta-decarb 99.5 8.5E-13 2.9E-17 157.7 19.5 130 678-814 192-332 (546)
409 3g7q_A Valine-pyruvate aminotr 99.5 1E-11 3.4E-16 143.1 27.0 273 215-529 79-408 (417)
410 3t18_A Aminotransferase class 99.4 5.8E-12 2E-16 145.1 23.4 325 151-528 21-408 (413)
411 2oat_A Ornithine aminotransfer 99.4 9.2E-12 3.2E-16 145.0 25.2 274 214-529 121-434 (439)
412 2r2n_A Kynurenine/alpha-aminoa 99.4 1.5E-11 5E-16 142.5 26.7 271 215-529 86-419 (425)
413 3tcm_A Alanine aminotransferas 99.4 6E-12 2E-16 149.1 22.0 271 216-529 139-489 (500)
414 3lws_A Aromatic amino acid bet 99.4 7.6E-12 2.6E-16 141.0 21.7 304 168-528 12-353 (357)
415 3if2_A Aminotransferase; YP_26 99.4 1.1E-11 3.7E-16 144.3 22.7 273 215-529 87-435 (444)
416 1z7d_A Ornithine aminotransfer 99.4 2.7E-11 9.1E-16 140.8 25.8 275 213-529 109-424 (433)
417 1s0a_A Adenosylmethionine-8-am 99.4 3.6E-11 1.2E-15 139.3 26.6 280 214-529 89-419 (429)
418 2ez2_A Beta-tyrosinase, tyrosi 99.4 1.6E-11 5.5E-16 143.4 23.2 272 213-529 77-426 (456)
419 7aat_A Aspartate aminotransfer 99.4 6.6E-12 2.3E-16 143.9 19.3 273 214-528 74-397 (401)
420 3pj0_A LMO0305 protein; struct 99.4 1.2E-11 4E-16 139.5 19.6 305 169-528 16-356 (359)
421 3a8u_X Omega-amino acid--pyruv 99.3 2.9E-11 1E-15 141.0 22.1 287 213-529 95-442 (449)
422 3d6k_A Putative aminotransfera 99.3 5E-11 1.7E-15 137.9 23.6 325 150-529 18-413 (422)
423 3k7y_A Aspartate aminotransfer 99.3 1.1E-11 3.7E-16 142.6 17.2 298 627-973 71-403 (405)
424 2cjg_A L-lysine-epsilon aminot 99.3 7.4E-11 2.5E-15 137.7 24.4 277 214-529 104-443 (449)
425 3fsl_A Aromatic-amino-acid ami 99.3 8.9E-11 3E-15 134.1 23.5 272 215-528 74-394 (397)
426 1ajs_A Aspartate aminotransfer 99.3 3.1E-11 1.1E-15 138.9 19.2 272 214-529 77-406 (412)
427 1ax4_A Tryptophanase; tryptoph 99.3 1.4E-10 4.6E-15 135.9 24.6 276 214-530 79-437 (467)
428 3dxv_A Alpha-amino-epsilon-cap 99.3 1.6E-10 5.6E-15 134.2 25.1 277 211-529 86-420 (439)
429 3ihj_A Alanine aminotransferas 99.3 1.6E-10 5.6E-15 136.6 24.8 276 207-529 129-488 (498)
430 4f4e_A Aromatic-amino-acid ami 99.3 1.3E-10 4.5E-15 134.2 22.0 270 215-528 96-416 (420)
431 1sff_A 4-aminobutyrate aminotr 99.3 4.9E-10 1.7E-14 129.3 26.8 274 213-529 86-419 (426)
432 3tfu_A Adenosylmethionine-8-am 99.3 3E-10 1E-14 132.9 25.1 282 214-529 121-448 (457)
433 2eo5_A 419AA long hypothetical 99.3 2.9E-10 1E-14 131.3 24.3 267 214-529 89-413 (419)
434 4ffc_A 4-aminobutyrate aminotr 99.3 1.1E-09 3.8E-14 127.9 29.4 275 213-529 109-444 (453)
435 1zod_A DGD, 2,2-dialkylglycine 99.3 4E-10 1.4E-14 130.5 25.4 277 214-529 88-427 (433)
436 1yaa_A Aspartate aminotransfer 99.3 4.3E-11 1.5E-15 137.7 16.9 268 214-529 76-406 (412)
437 2ay1_A Aroat, aromatic amino a 99.3 1.6E-11 5.5E-16 140.3 12.6 271 215-528 73-390 (394)
438 3meb_A Aspartate aminotransfer 99.3 3.4E-10 1.2E-14 132.1 24.0 274 214-529 97-439 (448)
439 3i4j_A Aminotransferase, class 99.3 3.5E-10 1.2E-14 131.0 23.8 281 214-529 75-423 (430)
440 4eu1_A Mitochondrial aspartate 99.3 2E-10 6.8E-15 132.1 21.4 273 215-528 83-405 (409)
441 3n5m_A Adenosylmethionine-8-am 99.2 5.4E-10 1.8E-14 130.4 25.0 282 213-529 93-447 (452)
442 3bwn_A AT1G70560, L-tryptophan 99.2 3.1E-10 1E-14 130.0 22.3 272 214-530 71-383 (391)
443 3f6t_A Aspartate aminotransfer 99.2 8.5E-10 2.9E-14 131.5 26.5 285 229-529 165-520 (533)
444 3i5t_A Aminotransferase; pyrid 99.2 6.5E-10 2.2E-14 130.7 24.5 284 213-529 99-449 (476)
445 4h51_A Aspartate aminotransfer 99.2 2.2E-10 7.6E-15 132.0 19.9 258 678-977 135-419 (420)
446 3dod_A Adenosylmethionine-8-am 99.2 1.1E-09 3.8E-14 127.6 26.1 284 214-529 90-438 (448)
447 2hox_A ALLIIN lyase 1; cystein 99.2 1.4E-11 5E-16 142.8 10.0 242 678-973 153-423 (427)
448 3gju_A Putative aminotransfera 99.2 1.9E-09 6.3E-14 126.2 27.8 286 213-529 97-451 (460)
449 3oks_A 4-aminobutyrate transam 99.2 3.6E-09 1.2E-13 123.5 28.9 275 213-529 106-446 (451)
450 4a6r_A Omega transaminase; tra 99.2 1.3E-09 4.4E-14 127.6 25.0 281 213-529 96-444 (459)
451 3b1d_A Betac-S lyase; HET: PLP 98.8 1.5E-12 5.2E-17 149.0 0.0 271 215-529 70-388 (392)
452 3hmu_A Aminotransferase, class 99.2 2.8E-09 9.5E-14 125.2 27.3 280 213-529 101-447 (472)
453 2q7w_A Aspartate aminotransfer 99.2 8.6E-11 2.9E-15 134.2 13.8 271 215-528 73-393 (396)
454 2cy8_A D-phgat, D-phenylglycin 99.2 2.4E-09 8.3E-14 124.9 25.8 271 215-529 101-430 (453)
455 4e77_A Glutamate-1-semialdehyd 99.2 1.3E-09 4.4E-14 126.2 22.8 275 213-529 95-424 (429)
456 3fq8_A Glutamate-1-semialdehyd 99.2 8.6E-10 3E-14 127.6 20.8 273 214-529 95-422 (427)
457 2epj_A Glutamate-1-semialdehyd 99.1 6.4E-10 2.2E-14 129.0 18.9 274 213-529 98-426 (434)
458 2oqx_A Tryptophanase; lyase, p 99.1 2.6E-10 9E-15 133.4 14.5 269 214-529 77-437 (467)
459 2hox_A ALLIIN lyase 1; cystein 99.1 2.2E-09 7.4E-14 124.4 21.7 267 215-529 104-420 (427)
460 3l44_A Glutamate-1-semialdehyd 99.1 1.8E-09 6.3E-14 125.1 19.3 274 214-529 98-425 (434)
461 2e7u_A Glutamate-1-semialdehyd 99.1 1.2E-09 4.2E-14 126.2 17.5 271 213-528 94-421 (424)
462 3k28_A Glutamate-1-semialdehyd 99.0 7.1E-09 2.4E-13 120.0 21.1 268 214-529 96-422 (429)
463 3ou5_A Serine hydroxymethyltra 99.0 6.1E-09 2.1E-13 117.6 17.2 285 216-528 105-435 (490)
464 4ao9_A Beta-phenylalanine amin 99.0 1.5E-08 5E-13 117.5 20.9 300 173-529 98-441 (454)
465 1ohv_A 4-aminobutyrate aminotr 99.0 1.3E-08 4.4E-13 119.5 20.4 267 218-529 117-466 (472)
466 2zy4_A L-aspartate beta-decarb 98.9 1.1E-07 3.9E-12 113.3 25.9 287 228-529 165-517 (546)
467 2yky_A Beta-transaminase; tran 98.3 6.7E-10 2.3E-14 129.5 0.0 275 211-530 140-456 (465)
468 4atq_A 4-aminobutyrate transam 98.6 6.7E-06 2.3E-10 95.5 27.0 274 215-529 111-450 (456)
469 4e3q_A Pyruvate transaminase; 98.5 1.3E-05 4.3E-10 93.6 24.6 289 215-542 115-470 (473)
470 3k7y_A Aspartate aminotransfer 98.4 1.5E-05 5E-10 91.4 22.4 305 171-528 34-399 (405)
471 4h51_A Aspartate aminotransfer 98.3 2.9E-05 1E-09 89.2 22.4 312 171-529 49-412 (420)
472 4a0g_A Adenosylmethionine-8-am 98.1 0.00018 6.1E-09 89.6 22.6 284 213-529 426-823 (831)
473 3f0i_A Arsenate reductase; str 62.4 8.4 0.00029 35.3 4.9 50 104-159 40-90 (119)
474 3rdw_A Putative arsenate reduc 59.3 10 0.00035 34.7 5.0 51 103-159 40-91 (121)
475 2yxb_A Coenzyme B12-dependent 32.7 1E+02 0.0034 29.5 7.5 61 697-765 42-105 (161)
476 1s3c_A Arsenate reductase; ARS 31.0 57 0.002 30.6 5.2 49 104-159 38-87 (141)
477 3bqs_A Uncharacterized protein 29.6 31 0.001 30.1 2.8 32 102-134 8-39 (93)
478 3l78_A Regulatory protein SPX; 26.9 58 0.002 29.5 4.4 49 104-159 36-85 (120)
479 3mab_A Uncharacterized protein 25.8 39 0.0013 29.4 2.8 26 103-128 9-34 (93)
480 1xrs_B D-lysine 5,6-aminomutas 25.1 1E+02 0.0035 32.2 6.3 99 255-356 120-242 (262)
481 1x60_A Sporulation-specific N- 23.8 87 0.003 25.7 4.6 45 485-529 23-68 (79)
482 3ezx_A MMCP 1, monomethylamine 23.4 5.5E+02 0.019 25.5 12.7 65 697-767 116-184 (215)
483 1uta_A FTSN, MSGA, cell divisi 22.7 76 0.0026 26.3 4.0 45 485-529 23-68 (81)
No 1
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=100.00 E-value=1.5e-60 Score=558.41 Aligned_cols=421 Identities=34% Similarity=0.519 Sum_probs=382.2
Q ss_pred ccCCCCCHHHHHHHHHHhCCCCHHHhhhhcCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHHHHcCCCc-cceecCCCCCC
Q 001990 100 RRHNSATPEDQAKMSELVGLDNLDSLIDATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQKLASMNKV-YKSFIGMGYYN 177 (985)
Q Consensus 100 ~~~~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~~~~~n~~-~~~~lG~g~~~ 177 (985)
++|||||++|+++||++||++|+||||++ ||+++ ++ +++|| +++||.+++++++.++++|.. +.+|+|.|+|+
T Consensus 1 ~~~~~~~~~~~~~ml~~~g~~~~~~~~~~-~p~~~~~~-~~~lp---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~ 75 (438)
T 1wyu_A 1 MDYTPHTEEEIREMLRRVGAASLEDLFAH-LPKEILSP-PIDLP---EPLPEWKVLEELRRLAAQNLPAHKAFLGGGVRS 75 (438)
T ss_dssp CCCCCCCHHHHHHHHHHHTCSSTGGGGTT-SCGGGSSC-CCCCC---CCCCHHHHHHHHHHHHHTSCCCTTCCCCSSCCC
T ss_pred CCCCCcCHHHHHHHHHHcCCCCHHHHHHh-CcHHHhcC-CCCCC---CCCCHHHHHHHHHHHHhcCcCccccccCCCccC
Confidence 48999999999999999999999999998 99999 77 88997 789999999999999999987 88999999999
Q ss_pred CCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCE
Q 001990 178 THVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKT 257 (985)
Q Consensus 178 ~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~ 257 (985)
+..|+.+ ++++++++|++.|+||||+++||.++.+.++++++|+++|++++++++++|+|+++|++++++++. +||+
T Consensus 76 ~~~p~~v-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~~--~gd~ 152 (438)
T 1wyu_A 76 HHVPPVV-QALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRET--GRMG 152 (438)
T ss_dssp CCCCHHH-HHHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHH--TCCE
T ss_pred CcCcHHH-HHHHhcchhhhcCCCCcchhhhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhcC--CCCE
Confidence 9999999 478888899999999999999999999999999999999999888899999999999998887665 7899
Q ss_pred EEEcCCCChhHHHHHHHhhcCCCeEEEEeCchh----hhccCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEe
Q 001990 258 FIIASNCHPQTIDICITRADGFDIKVVVSDLKD----IDYKSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMAT 333 (985)
Q Consensus 258 Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~~~----l~~l~~~t~~V~v~~pn~~G~i~dl~~I~~~a~~~galliV~a 333 (985)
||+++..|+++..+|+.+++..|++++.++.++ +++++++|++|++++||++|.+.|+++|+++||++|++++|++
T Consensus 153 Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~~~~~d~~~i~~~t~~v~i~~pn~tG~~~~l~~i~~la~~~g~~vivd~ 232 (438)
T 1wyu_A 153 VLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRTPLPEVGEEVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVA 232 (438)
T ss_dssp EEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBCCCCCCCTTEEEEEEESSCTTSBCCCHHHHHHHHHHTTCEEEEEC
T ss_pred EEEcCccCHhHHHHHHHHHHHCCCEEEEEcCcCCccCHHHhCCCeEEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEe
Confidence 999999999999999888888899999998633 2225678999999999999999999999999999999999877
Q ss_pred ccccccCCCCCCcccceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccc
Q 001990 334 DLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR 413 (985)
Q Consensus 334 ~~~alg~l~~p~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rr 413 (985)
|..++|.+..++++|+|++++++|+|+.|+++|||++|++++++++++++|++++|++.+.+|.+.|.+++|+|++++||
T Consensus 233 d~~a~g~~~~~~~~g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~ 312 (438)
T 1wyu_A 233 DPLSLGVLKPPGAYGADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRR 312 (438)
T ss_dssp CTTGGGTBCCHHHHTCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHG
T ss_pred chhhccCcCCCccCCCCEEEECCcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccch
Confidence 76778877777889999999999999999999999999999999999999999999988877878899999999999999
Q ss_pred cccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCC-CCcceEEEecCC-HHHHHHH
Q 001990 414 DKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCAD-AHAIASA 491 (985)
Q Consensus 414 e~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~i~~~~-~~~l~~~ 491 (985)
+++|+|+|+++.+.++.+++|+.+++++|++++.++..+++++++++|+++.|+++..+ +++..+.+..+. ..++.++
T Consensus 313 ~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (438)
T 1wyu_A 313 AKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALPKDPEAVRRA 392 (438)
T ss_dssp GGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECSSCHHHHHHH
T ss_pred hcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCCeEEEEEEeCCCCHHHHHHH
Confidence 99999999999999998888889999999999999999999999999999833998854 567777777654 8899999
Q ss_pred HHHcCcee--eee---cCCeEEEEeccCCCHHHHHHHHHHHh
Q 001990 492 AYKIEMNL--RVV---DSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 492 L~~~Gi~~--~~~---~~~~lris~~~~~t~edid~ll~~l~ 528 (985)
|.++||.+ +.. .++.+|+|+++++|++|+++++++|+
T Consensus 393 L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~ 434 (438)
T 1wyu_A 393 LAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALK 434 (438)
T ss_dssp HHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHH
T ss_pred HHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHH
Confidence 99999988 322 26899999999999999999999986
No 2
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=100.00 E-value=1.1e-41 Score=402.40 Aligned_cols=405 Identities=40% Similarity=0.713 Sum_probs=319.5
Q ss_pred cCCCCccCCCCCCCCccccccCCHHHHHHHHHHHhcCccCcCcccccccceecccCccccccccccccccccCCCCcchh
Q 001990 547 AIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQ 626 (985)
Q Consensus 547 ~ip~~~~~~~~~~~~pv~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lGs~~~~~~~~~~~~~~~~~~f~~~~p~~p~e~ 626 (985)
.||++++|++++ .+| ++||.|+++++.+++++|..+++.+++||+|++++++........+ +.+|+||++.+.
T Consensus 29 ~~p~~~~~~~~~-~lp----~~~e~~~~~~~~~l~~~~~~~~~~~~~lg~~~~~~~p~v~~~~~~~--~~~~~~~~~~~~ 101 (474)
T 1wyu_B 29 LIPKEHLREVPP-RLP----EVDELTLVRHYTGLSRRQVGVDTTFYPLGSCTMKYNPKLHEEAARL--FADLHPYQDPRT 101 (474)
T ss_dssp HSCGGGBCSSCC-CCC----CCCHHHHHHHHHHHHTTCCCTTTSCCCBTTTCCCCCCHHHHHHHHT--TSSCCTTSCGGG
T ss_pred cCCHHHhccCCC-CCC----CCCHHHHHHHHHHHHhCCCCcccCccccccccccCCHHHHHHHHHH--HHhcCCCCchhh
Confidence 499999999876 777 6999999999999999998878889999988887665431111222 666899998448
Q ss_pred hhcHHHHHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCC-CCCCEEEEcCCCCCCcHHHHHhcCcEEE
Q 001990 627 AQGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGD-HHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 627 ~~G~~~~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~-~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~ 705 (985)
++|..+++.++++++++++|++...+++++|++++++++++++.|...+|. .++++||+++++|+++...++..|++++
T Consensus 102 ~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv 181 (474)
T 1wyu_B 102 AQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVR 181 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEE
T ss_pred ChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEE
Confidence 999999999999999999999876667789999888778888876555553 3456899999999999999999999999
Q ss_pred EEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcCCCcccc-ccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCCC
Q 001990 706 SVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVY-EEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGA 784 (985)
Q Consensus 706 ~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~pn~~G~i-~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g~ 784 (985)
.+|++++|.+|+++|+++++ ++|++|++++||++|.+ + |+++|+++||++|+++|+|++|..+..+..+++.+|+
T Consensus 182 ~v~~~~~~~~d~~~L~~~i~---~~t~~v~~~~pn~~G~~~~-~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~ 257 (474)
T 1wyu_B 182 EIPSGPEGEVDLEALKRELG---PHVAALMLTNPNTLGLFER-RILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGF 257 (474)
T ss_dssp EECBCTTSSBCHHHHHHHCS---TTEEEEEECSSCTTSCCCT-THHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTC
T ss_pred EecCCCCCCcCHHHHHHhhC---CCceEEEEECCCCCcccCC-CHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCC
Confidence 99998889999999999997 78999999999999998 5 8999999999999999999999765544456677899
Q ss_pred cEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCC--CCCCCCCCCCCcccccchhhhHHHHHHHHHHH
Q 001990 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI--PAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 785 Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~--~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~ 862 (985)
|++++|+||+|+.|+|+||||+|++++++++++.+++++++..+.. ....++....... +.+++...+.++++++..
T Consensus 258 di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~aa~~~l~~ 336 (474)
T 1wyu_B 258 DVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVR-SFYGNFLALVRAWAYIRT 336 (474)
T ss_dssp SEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSS-STTSCHHHHHHHHHHHHH
T ss_pred cEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccc-cCcCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888875443211000 0000000000000 011234556778889988
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC-
Q 001990 863 MGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP- 940 (985)
Q Consensus 863 lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~p- 940 (985)
+|.+++.+..++..++++++.+.|++ ++++... +..++.+++++. .+.+..++.++|.++||.++...+|
T Consensus 337 ~g~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~---~~~~~~~~~~~~-----~~~~~~~l~~~L~~~Gi~~~~~~~~~ 408 (474)
T 1wyu_B 337 LGLEGLKKAAALAVLNARYLKELLKEKGYRVPYD---GPSMHEFVAQPP-----EGFRALDLAKGLLELGFHPPTVYFPL 408 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSC---SSCCSCEEEBCS-----TTCCHHHHHHHHHHTTCCCCEESCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcEecCC---CCcceEEEEEcC-----CCCCHHHHHHHHHHCCcccccccccc
Confidence 89999988888999999999999987 4544222 223444566652 2567899999999999997655555
Q ss_pred -CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 941 -VPGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 941 -v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
..+.+|++++..+|++|+| +++++|++++++
T Consensus 409 ~~~~~lRis~~~~~t~e~id---~~~~~L~~~~~~ 440 (474)
T 1wyu_B 409 IVKEALMVEPTETEAKETLE---AFAEAMGALLKK 440 (474)
T ss_dssp TSTTCEEECCCTTSCHHHHH---HHHHHHHHHHTS
T ss_pred ccCCEEEEEeecCCCHHHHH---HHHHHHHHHHHh
Confidence 3588999999999999999 999999988643
No 3
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=100.00 E-value=6.6e-37 Score=358.00 Aligned_cols=407 Identities=19% Similarity=0.279 Sum_probs=303.6
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCCCHHhhhhhhhccCCCCccCCCCCCCCccccccCCHHHHHHHHHHHhcCccCcCcccc
Q 001990 513 ETTTLEDVDKLFIVFAGGKSVPFTAASLAEEVETAIPSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMI 592 (985)
Q Consensus 513 ~~~t~edid~ll~~l~~~~~~~~~~~~l~~~~~~~ip~~~~~~~~~~~~pv~~~~~se~e~~~~l~~l~~~~~~~~~~~~ 592 (985)
.-+|++|+++|++.++.+ |+|+|++ +||+++|++ ++ .+| +++||.++++++..+++++.. +..+
T Consensus 4 ~~~~~~~~~~ml~~~g~~-----~~~~~~~----~~p~~~~~~-~~-~lp---~~~~~~~~~~~~~~l~~~~~~--~~~~ 67 (438)
T 1wyu_A 4 TPHTEEEIREMLRRVGAA-----SLEDLFA----HLPKEILSP-PI-DLP---EPLPEWKVLEELRRLAAQNLP--AHKA 67 (438)
T ss_dssp CCCCHHHHHHHHHHHTCS-----STGGGGT----TSCGGGSSC-CC-CCC---CCCCHHHHHHHHHHHHHTSCC--CTTC
T ss_pred CCcCHHHHHHHHHHcCCC-----CHHHHHH----hCcHHHhcC-CC-CCC---CCCCHHHHHHHHHHHHhcCcC--cccc
Confidence 457899999999999987 8999985 599999988 64 777 789999999999999988753 1234
Q ss_pred cccceecccCcccccc-ccccccc-cccCCCCcchhhhcHHHHHHHHHHHHHHHhCCCccce-ecChHHHHHHHHHHHHH
Q 001990 593 PLGSCTMKLNATTEMM-PVTWPSF-ANIHPFAPADQAQGYQEMFNNLGEWLCTITGFDSFSL-QPNAGAAGEYAGLMVIR 669 (985)
Q Consensus 593 ~lGs~~~~~~~~~~~~-~~~~~~f-~~~~p~~p~e~~~G~~~~~~el~~~la~l~G~~~~~~-~~~sGa~g~~a~l~air 669 (985)
++|.+.+......... ...+.+| .+|+||+| +.++|..+++.++++++++++|++..++ +.++++.+.++++++++
T Consensus 68 ~~~~g~~~~~~p~~v~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~ 146 (438)
T 1wyu_A 68 FLGGGVRSHHVPPVVQALAARGEFLTAYTPYQP-EVSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR 146 (438)
T ss_dssp CCCSSCCCCCCCHHHHHHHTSHHHHHCCSCCSG-GGCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH
T ss_pred ccCCCccCCcCcHHHHHHHhcchhhhcCCCCcc-hhhhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHh
Confidence 5665443222211111 1233456 44899998 8999999999999999999999987643 33333333346666543
Q ss_pred HHHHhcCCCCCCEEEEcCCCCCCcHHHH----HhcCcEEEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcCCCcccc
Q 001990 670 AYHKARGDHHRNVCIIPVSAHGTNPATA----AMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVY 745 (985)
Q Consensus 670 ~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~----~~~G~~v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~pn~~G~i 745 (985)
. .++++||++...|.++...+ +..|++++.++. +++.+|+++ |+ ++|++|++++||++|.+
T Consensus 147 ~-------~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~-~~~~~d~~~----i~---~~t~~v~i~~pn~tG~~ 211 (438)
T 1wyu_A 147 E-------TGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPL-EGGRTPLPE----VG---EEVGAVVVQNPNFLGAL 211 (438)
T ss_dssp H-------HTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECC-BTTBCCCCC----CC---TTEEEEEEESSCTTSBC
T ss_pred c-------CCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcC-cCCccCHHH----hC---CCeEEEEEECCCCCeEE
Confidence 2 25789999999887665433 458999999997 567888876 55 78999999999999999
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcc-ccccccCCCCCCcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCcc
Q 001990 746 EEGIDEICKIIHDNGGQVYMDGA-NMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPV 824 (985)
Q Consensus 746 ~~di~eI~~la~~~g~lliVD~a-~~~~~~g~~~~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~ 824 (985)
. |+++|+++||++|+++|+|.. ++ .+.+..++.+|+|++++| +|.|++|+++||||+|++++++++.+.++++..
T Consensus 212 ~-~l~~i~~la~~~g~~vivd~d~~a--~g~~~~~~~~g~D~~~~s-~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~ 287 (438)
T 1wyu_A 212 E-DLGPFAEAAHGAGALFVAVADPLS--LGVLKPPGAYGADIAVGD-GQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLV 287 (438)
T ss_dssp C-CHHHHHHHHHHTTCEEEEECCTTG--GGTBCCHHHHTCSEEEEE-CTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCE
T ss_pred e-cHHHHHHHHHHcCCEEEEEechhh--ccCcCCCccCCCCEEEEC-CcccCCCccCCCCCeeEEEEcHHHHHhCCCcee
Confidence 8 899999999999999998854 42 344445677899999999 567999999999999999999999888887665
Q ss_pred ccCCCC-C------------CC-CCCCCCCCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc--
Q 001990 825 VSTGGI-P------------AP-EKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-- 888 (985)
Q Consensus 825 g~~~~~-~------------~~-~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-- 888 (985)
|.+.+. + .+ +++.++++++++ +...+..+++++..++++|+.+..++..++++++.++|++
T Consensus 288 g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~---~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~ 364 (438)
T 1wyu_A 288 SETVDVEGRRGFILTLQAREQYIRRAKAKSNITTN---AQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVP 364 (438)
T ss_dssp EEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred ccccccCCCcceeeeccccccccchhcccCCccch---HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 542110 0 00 134577787753 2333344456688888899999999999999999999987
Q ss_pred cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCcc--CC-CCCCCCCEEEEeccCCCCHHhhchHHHHH
Q 001990 889 HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHG--PT-MSWPVPGTLMIEPTESESKVCHNREDLFF 965 (985)
Q Consensus 889 ~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~--~~-~~~pv~~~lris~t~~~t~eeId~~~~~i 965 (985)
++++. ++ .+.++.+.+.+ +.+..++.++|.++||.+ .. ..++ ++.+|+|++..+|++|+| +++
T Consensus 365 g~~~~--~~-~~~~~~~~~~~-------~~~~~~~~~~L~~~gi~v~~~~~~~~~-~~~lRis~~~~~t~edi~---~~~ 430 (438)
T 1wyu_A 365 GVRPF--TP-KPFFNEFALAL-------PKDPEAVRRALAERGFHGATPVPREYG-ENLALFAATELHEEEDLL---ALR 430 (438)
T ss_dssp TCEEC--SC-SSBCSEEEEEC-------SSCHHHHHHHHHHTTCCCCEECCTTSC-SSEEEEECCTTCCHHHHH---HHH
T ss_pred CeEEC--CC-CCeEEEEEEeC-------CCCHHHHHHHHHHCCceeccccccccC-CCeEEEEecccCCHHHHH---HHH
Confidence 34432 22 23455455553 246789999999999998 22 2233 589999999999999999 999
Q ss_pred HHHHHHH
Q 001990 966 QILLSLT 972 (985)
Q Consensus 966 ~aL~~i~ 972 (985)
++|++++
T Consensus 431 ~~l~~~l 437 (438)
T 1wyu_A 431 EALKEVL 437 (438)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9998753
No 4
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=100.00 E-value=1.7e-36 Score=358.07 Aligned_cols=374 Identities=18% Similarity=0.194 Sum_probs=297.2
Q ss_pred cCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHHHHcCCCc---cceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhh
Q 001990 129 TVPKSI-RIDSMKFSKFDEGLTESQMIEHMQKLASMNKV---YKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAE 204 (985)
Q Consensus 129 ~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~~~~~n~~---~~~~lG~g~~~~~~p~~v~~~i~~~~~~~t~~~py~~e 204 (985)
.||+++ ++++++|| ++||.|+++++++++++|.. ...|+| |+++|+.|.++. ++.++ ++.|+|||++
T Consensus 29 ~~p~~~~~~~~~~lp----~~~e~~~~~~~~~l~~~~~~~~~~~~~lg-~~~~~~~p~v~~-~~~~~---~~~~~~~~~~ 99 (474)
T 1wyu_B 29 LIPKEHLREVPPRLP----EVDELTLVRHYTGLSRRQVGVDTTFYPLG-SCTMKYNPKLHE-EAARL---FADLHPYQDP 99 (474)
T ss_dssp HSCGGGBCSSCCCCC----CCCHHHHHHHHHHHHTTCCCTTTSCCCBT-TTCCCCCCHHHH-HHHHT---TSSCCTTSCG
T ss_pred cCCHHHhccCCCCCC----CCCHHHHHHHHHHHHhCCCCcccCccccc-cccccCCHHHHH-HHHHH---HHhcCCCCch
Confidence 399999 88889997 79999999999999999975 345788 899999999875 67765 7889999998
Q ss_pred -HhhHHHHHHHHHHHHHHHhhCCCCcceeec-cchHHHHHHHHHHhhh-hcCCCC-----EEEEcCCCChhHHHHHHHhh
Q 001990 205 -IAQGRLESLLNFQTMIADLTGLPMSNASLL-DEGTAAAEAMAMCNNI-QKGKKK-----TFIIASNCHPQTIDICITRA 276 (985)
Q Consensus 205 -~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~-~~~ta~~ea~~~a~~~-~~~~g~-----~Vlv~~~~h~s~~~~~~~~a 276 (985)
.+||.++.+.++++++++++|++. ..++ .+||.+..+++++.+. ..++|| +||+++..|+++...++
T Consensus 100 ~~~~g~~~l~~~l~~~la~~~g~~~--~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~--- 174 (474)
T 1wyu_B 100 RTAQGALRLMWELGEYLKALTGMDA--ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATAS--- 174 (474)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHH---
T ss_pred hhChHHHHHHHHHHHHHHHHHCCCc--eeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHH---
Confidence 899999999999999999999986 3545 6666666655544431 001444 99999999999998864
Q ss_pred cCCCeEEEEeCc--------hhhhc-cCCCEeEEEEEcCCCCeee-ccHHHHHHHHHhCCcEEEEEeccccccC--CCCC
Q 001990 277 DGFDIKVVVSDL--------KDIDY-KSGDVCGVLVQYPGTEGEV-LDYGDFIKNAHANGVKVVMATDLLALTI--LKPP 344 (985)
Q Consensus 277 ~~~gi~v~~~~~--------~~l~~-l~~~t~~V~v~~pn~~G~i-~dl~~I~~~a~~~galliV~a~~~alg~--l~~p 344 (985)
..|++++.++. ++|++ ++++|++|++++||++|.+ .|+++|+++||++|+++++|. ..+.+. ..++
T Consensus 175 -~~G~~vv~v~~~~~~~~d~~~L~~~i~~~t~~v~~~~pn~~G~~~~~l~~i~~l~~~~g~~li~De-a~~~~~~g~~~~ 252 (474)
T 1wyu_B 175 -MAGYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDG-ANLNAIMGWARP 252 (474)
T ss_dssp -HTTCEEEEECBCTTSSBCHHHHHHHCSTTEEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEG-GGGGGTTTTCCH
T ss_pred -HCCCEEEEecCCCCCCcCHHHHHHhhCCCceEEEEECCCCCcccCCCHHHHHHHHHHcCCEEEEeC-chhhhhccCCCc
Confidence 35888888765 35666 7889999999999999999 699999999999999999952 333222 2355
Q ss_pred CcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccch
Q 001990 345 GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTA 423 (985)
Q Consensus 345 ~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~ 423 (985)
+++|+|++++++ |+|++|+++|||++|+++++++++++++++++|+ .| ..|.+++ +++++++|.+.+. .
T Consensus 253 ~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~----~g-~~~~~~~-~~~~~~~~~~~~~---~- 322 (474)
T 1wyu_B 253 GDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVER----GE-EGFYLDF-DRPKSIGRVRSFY---G- 322 (474)
T ss_dssp HHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEE----CS-SCEEEEC-CCTTCCCCSSSTT---S-
T ss_pred ccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeec----cC-CeeEecc-cCcccCcccccCc---C-
Confidence 788999999998 8999999999999999999999999998888774 13 3477777 5788988775432 1
Q ss_pred hHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEc-CCCCcceEEEecC--C-HHHHHHHHHHcCcee
Q 001990 424 QALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ-GLPFFDTVKVKCA--D-AHAIASAAYKIEMNL 499 (985)
Q Consensus 424 ~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~-~~~~~~~~~i~~~--~-~~~l~~~L~~~Gi~~ 499 (985)
+.+....+..++..+|.++++++.++..++++++++.|+++| +++. +.+.++++.+.++ . ..++.++|.++||.+
T Consensus 323 ~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~~ 401 (474)
T 1wyu_B 323 NFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKG-YRVPYDGPSMHEFVAQPPEGFRALDLAKGLLELGFHP 401 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CBCSSCSSCCSCEEEBCSTTCCHHHHHHHHHHTTCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cEecCCCCcceEEEEEcCCCCCHHHHHHHHHHCCccc
Confidence 233333334466778889999999999999999999999986 8874 3344555666553 2 889999999999976
Q ss_pred eee-----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 500 RVV-----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 500 ~~~-----~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
... ..+.+|++++.++|++|+++++++|..
T Consensus 402 ~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~ 436 (474)
T 1wyu_B 402 PTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGA 436 (474)
T ss_dssp CEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHH
T ss_pred cccccccccCCEEEEEeecCCCHHHHHHHHHHHHH
Confidence 432 257899999999999999999999974
No 5
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-29 Score=300.80 Aligned_cols=382 Identities=15% Similarity=0.135 Sum_probs=271.6
Q ss_pred CCccccccCCHHHHHHHHHHHhcC--ccCcCcccccccc-eecccCccccccccccccccccCCCCcchhhhcHHHHHHH
Q 001990 560 THPVFNKYHTEHELLRYIHLLQSK--ELSLCHSMIPLGS-CTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNN 636 (985)
Q Consensus 560 ~~pv~~~~~se~e~~~~l~~l~~~--~~~~~~~~~~lGs-~~~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e 636 (985)
.+| ..|+++.+++++++++... +..+.++ .++|. +... +...+.....+..|.+.+++++ +.++|..++..+
T Consensus 37 ~lp--~~g~~~~~i~~~l~~~~~~~~~~~~~~~-~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~ 111 (497)
T 3mc6_A 37 QLP--SNGIPQDDVIEELNKLNDLIPHTQWKEG-KVSGAVYHGG-DDLIHLQTIAYEKYCVANQLHP-DVFPAVRKMESE 111 (497)
T ss_dssp SCC--SSCCCHHHHHHHHHHHHHSSCCCCGGGT-CBSSSCSCCC-HHHHHHHHHHHHHTSSCBTTCT-TTCHHHHHHHHH
T ss_pred CCC--CCCCCHHHHHHHHHHHhhhcCCCCCCCC-CEeeecCCCc-hHHHHHHHHHHHHHhhcCCCCc-ccChHHHHHHHH
Confidence 567 6899999999999999874 4444333 33442 1111 1112222222334555567776 778999999999
Q ss_pred HHHHHHHHhCCC--c-cceecChHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCC-
Q 001990 637 LGEWLCTITGFD--S-FSLQPNAGAAGEYAGLMVIRAYHKA-RGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA- 711 (985)
Q Consensus 637 l~~~la~l~G~~--~-~~~~~~sGa~g~~a~l~air~~~~~-~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~- 711 (985)
+++++++++|++ . ..+++++|++++..++.+++.+... +|. ++++|+++...|.++...++..|++++.+|+++
T Consensus 112 ~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~-~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~~ 190 (497)
T 3mc6_A 112 VVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGI-TEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDPT 190 (497)
T ss_dssp HHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCC-SSCEEEEETTSCHHHHHHHHHSCCEEEEECBCTT
T ss_pred HHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCC-CCceEEEeCCccHHHHHHHHHcCCeEEEEecCcc
Confidence 999999999998 3 3467788888877777766654322 332 357899999999888888899999999999987
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccC---------C--CCC
Q 001990 712 KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG---------L--TSP 779 (985)
Q Consensus 712 ~g~iDle~L~~~i~~~~~~t~~Vvi~~pn-~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g---------~--~~~ 779 (985)
++.+|+++|+++++ +++++|++++|+ ++|.+. |+++|+++|+++|+++|||++|...... + ...
T Consensus 191 ~~~~d~~~l~~~i~---~~~~~v~~~~p~nptG~~~-~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~ 266 (497)
T 3mc6_A 191 TYQVDLGKVKKFIN---KNTVLLVGSAPNFPHGIAD-DIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDF 266 (497)
T ss_dssp TCSBCTTTTGGGCC---SSEEEEEEETTCTTTCCCC-SCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCST
T ss_pred cCcCCHHHHHHHHh---hCCEEEEEECCCCCCCcCC-CHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccc
Confidence 78999999999997 789999999996 799998 8999999999999999999998522111 1 123
Q ss_pred CcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHH
Q 001990 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 780 g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~ 859 (985)
...|+|++++++||+++ ||+++|+++++++............. .....+..++.++.. ...+++.|++
T Consensus 267 ~~~g~d~~~~s~~K~l~-----~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~--~~~~~a~~aa 334 (497)
T 3mc6_A 267 RVPGVTSISCDTHKYGF-----APKGSSVIMYRNSDLRMHQYYVNPAW-----TGGLYGSPTLAGSRP--GAIVVGCWAT 334 (497)
T ss_dssp TSTTCCEEEEETTTTTC-----CCSSCEEEECSSHHHHTTTSCCBTTC-----TTSCBCCSSSCSSCB--HHHHHHHHHH
T ss_pred cCCCCcEEEECchhhcC-----CCCCceeEEecCHHHHhhhhcccccc-----cCCCcCCcCcccCCc--chhHHHHHHH
Confidence 35689999999999873 55688999988654432211110000 000111222322222 2234557888
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC
Q 001990 860 IAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS 938 (985)
Q Consensus 860 l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~ 938 (985)
+..++.+|+.+..++..++++++++.|++ ..++...++ +..+.+.+... +.+..++.+.|.++||.+....
T Consensus 335 l~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~--~~~~~v~~~~~------~~~~~~l~~~L~~~Gi~v~~~~ 406 (497)
T 3mc6_A 335 MVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGN--PRYSVISFSSK------TLNIHELSDRLSKKGWHFNALQ 406 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSC--CCSSEEEEECT------TTTHHHHHHHHHTTTCBCEECC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC--CCeeEEEEeCC------CCCHHHHHHHHHhCCEEEecCC
Confidence 88999999999999999999999999987 333322222 22333455543 5678999999999999876444
Q ss_pred CCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHHH
Q 001990 939 WPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTTF 977 (985)
Q Consensus 939 ~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~~ 977 (985)
. ++.+|++++ .+|++|+| +++++|+++++++.+
T Consensus 407 ~--~~~~ri~~~-~~t~e~i~---~~~~~L~~~l~~~~~ 439 (497)
T 3mc6_A 407 K--PVALHMAFT-RLSAHVVD---EICDILRTTVQELKS 439 (497)
T ss_dssp S--SCCEEEECC-TTTTCTHH---HHHHHHHHHHHHHTC
T ss_pred C--CCeEEEEEe-CCCHHHHH---HHHHHHHHHHHHHHh
Confidence 3 367899999 78999999 999999999987654
No 6
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.96 E-value=1.6e-26 Score=271.11 Aligned_cols=384 Identities=11% Similarity=0.017 Sum_probs=258.0
Q ss_pred CCccccccCCHHHHHHHHHHHhcCccCc-CcccccccceecccCccccccccccccccccCCCCcchhhhcHHHHHHHHH
Q 001990 560 THPVFNKYHTEHELLRYIHLLQSKELSL-CHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLG 638 (985)
Q Consensus 560 ~~pv~~~~~se~e~~~~l~~l~~~~~~~-~~~~~~lGs~~~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~el~ 638 (985)
.+| .+|++++++++.+.++..++... .....+++ +...+...+... +..+-+++++ +.+++..++.++++
T Consensus 17 ~lp--~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~--~~~~~~v~e~~~----~a~~~~~~~~-~~~~~~~~l~~~~~ 87 (452)
T 2dgk_A 17 RFP--LHEMRDDVAFQIINDELYLDGNARQNLATFCQ--TWDDENVHKLMD----LSINKNWIDK-EEYPQSAAIDLRCV 87 (452)
T ss_dssp SCC--CSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSC--CCCCHHHHHHHH----HTTTCBTTCT-TTCHHHHHHHHHHH
T ss_pred CCC--CCCCCHHHHHHHHHHHhcCCCCCccCCCCeeC--CCchHHHHHHHH----HHhccCCCCh-hhChhHHHHHHHHH
Confidence 456 58899999999999998655321 11112333 111111111111 1111123333 45689999999999
Q ss_pred HHHHHHhCCCcc------ceecChHHHHHHHHHHHHHHHHH----hcCCC-CCCEEEEcCCCCCCcHHHHHhcCcEEEEE
Q 001990 639 EWLCTITGFDSF------SLQPNAGAAGEYAGLMVIRAYHK----ARGDH-HRNVCIIPVSAHGTNPATAAMCGMKIVSV 707 (985)
Q Consensus 639 ~~la~l~G~~~~------~~~~~sGa~g~~a~l~air~~~~----~~g~~-~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v 707 (985)
+++++++|++.. .+++++|++++..++++++.... ..|.. .+++||+++ .|.++...++..|++++.|
T Consensus 88 ~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v 166 (452)
T 2dgk_A 88 NMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREI 166 (452)
T ss_dssp HHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEE
Confidence 999999999864 35667777777666655543211 12311 246899999 9988888889999999999
Q ss_pred eCCC-CCCCCHHHHHHHHHhcCCCeEEEEEEcCC-CccccccCHHHHHHHHHHc------CCEEEEEccccccccCC-C-
Q 001990 708 GTDA-KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDN------GGQVYMDGANMNAQVGL-T- 777 (985)
Q Consensus 708 ~~~~-~g~iDle~L~~~i~~~~~~t~~Vvi~~pn-~~G~i~~di~eI~~la~~~------g~lliVD~a~~~~~~g~-~- 777 (985)
|+++ ++.+|+++|+++|+ ++|++|++++|| ++|.++ |+++|+++|+++ |+++|||+|+..+...+ .
T Consensus 167 ~~~~~~~~~d~~~l~~~i~---~~t~~v~~~~~~n~tG~~~-~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~ 242 (452)
T 2dgk_A 167 PMRPGQLFMDPKRMIEACD---ENTIGVVPTFGVTYTGNYE-FPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAP 242 (452)
T ss_dssp CCBTTBCSCCHHHHHHHCC---TTEEEEECBBSCTTTCBBC-CHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCT
T ss_pred ecCCCCCeECHHHHHHHHh---hCCEEEEEEcCCcCCcccC-CHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCc
Confidence 9986 69999999999997 789999999994 799998 899999999996 99999999986432111 1
Q ss_pred ----CCCcCCCcEEEeCCcccccccCCCCCCcceeeeeccc-cc-CcC---CCCccccCCCCCCCCCCCCCCCcccccch
Q 001990 778 ----SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LA-PFL---PSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 778 ----~~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~-l~-~~l---pg~~~g~~~~~~~~~~~~~t~~i~s~~~g 848 (985)
.....++|++++++||++ ++|+++|++++++. +. +.+ +... +.. ..+..+..++.+
T Consensus 243 ~~~~~~~~~~~d~~~~~~hK~~-----~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~r~~ 307 (452)
T 2dgk_A 243 DIVWDFRLPRVKSISASGHKFG-----LAPLGCGWVIWRDEEALPQELVFNVDYL-GGQ---------IGTFAINFSRPA 307 (452)
T ss_dssp TCCCSTTSTTEEEEEEETTTTT-----CCCSSCEEEEESSGGGSCGGGCEEECCT-TCC---------EEECCSCCSCBC
T ss_pred cchhhcCCCCCcEEEECccccc-----CCCCCeEEEEEcCHHHHHHHhccCcccc-CCC---------CCCcccCCCChh
Confidence 111347999999999976 35678999999753 32 322 1111 100 000001111111
Q ss_pred hhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc--cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHH
Q 001990 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 849 ~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~--~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~ 926 (985)
..+.+.|+.+..+|.+|+.+..++..++++++.+.|++ ++++..++...+..+.+++.+... ...+.+..++.++
T Consensus 308 --~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~-~~~~~~~~~l~~~ 384 (452)
T 2dgk_A 308 --GQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDG-EDPGYTLYDLSER 384 (452)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTT-CCCSCCHHHHHHH
T ss_pred --HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCc-ccccCCHHHHHHH
Confidence 12344577788889999999999999999999999987 355443321012345566665410 0012456899999
Q ss_pred HHHCCCccCCCCCC--C--CCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHHHc
Q 001990 927 LMDYGFHGPTMSWP--V--PGTLMIEPTESESKVCHNREDLFFQILLSLTKFTTFA 978 (985)
Q Consensus 927 L~e~Gi~~~~~~~p--v--~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~~~ 978 (985)
|.++||.+..+..| . .+.+|++++..+|++|+| +|+++|+++++++++.
T Consensus 385 L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id---~li~~l~~~~~~~~~~ 437 (452)
T 2dgk_A 385 LRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAE---LLLEDYKASLKYLSDH 437 (452)
T ss_dssp HHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHH---HHHHHHHHHHHHHHHC
T ss_pred HHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHH---HHHHHHHHHHHHHHhC
Confidence 99999976532222 1 348999999999999999 9999999998887654
No 7
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.3e-27 Score=276.44 Aligned_cols=389 Identities=13% Similarity=0.167 Sum_probs=255.5
Q ss_pred CCCCCHHHHHHHHHHhCCCCHHHhhhhcCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcC--CCccc--eecCCCCCC
Q 001990 102 HNSATPEDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASM--NKVYK--SFIGMGYYN 177 (985)
Q Consensus 102 ~~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~~~~~~~lp~~~~~~se~e~~~~~~~~~~~--n~~~~--~~lG~g~~~ 177 (985)
-||++++++++||++++.+..++|+.. +|...+ ..+|| +.++++.+++++++++... +..+. +|.|.-+.+
T Consensus 2 ~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~lp--~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~g~~~~~ 76 (497)
T 3mc6_A 2 GSPFLRGTVEKEVTKVKQSIEDELIRS-DSQLMN--FPQLP--SNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHG 76 (497)
T ss_dssp ------------------------------CCCC--CSSCC--SSCCCHHHHHHHHHHHHHSSCCCCGGGTCBSSSCSCC
T ss_pred CCCchHHHHHHHHHHHHHHHHHhhcCC-cccccc--ccCCC--CCCCCHHHHHHHHHHHhhhcCCCCCCCCCEeeecCCC
Confidence 378899999999999999999999975 665442 24677 6899999999999999874 33332 455543322
Q ss_pred CCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHHHHHHHHHhhCCC--CcceeeccchHHHHHHHHHHhhhh----
Q 001990 178 THVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLP--MSNASLLDEGTAAAEAMAMCNNIQ---- 251 (985)
Q Consensus 178 ~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g~~--~~~~sl~~~~ta~~ea~~~a~~~~---- 251 (985)
. |... +.+.+.-..+..+++++++.++|..+...++++++++++|++ ..++.+++|||.++..++.+++..
T Consensus 77 ~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~ 153 (497)
T 3mc6_A 77 G--DDLI-HLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHH 153 (497)
T ss_dssp C--HHHH-HHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred c--hHHH-HHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhc
Confidence 2 2222 222222122344578888889999999999999999999998 668889999998888777665321
Q ss_pred cC-CCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---------hhhhc-cCCCEeEEEEEcCC-CCeeeccHHHHH
Q 001990 252 KG-KKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---------KDIDY-KSGDVCGVLVQYPG-TEGEVLDYGDFI 319 (985)
Q Consensus 252 ~~-~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~---------~~l~~-l~~~t~~V~v~~pn-~~G~i~dl~~I~ 319 (985)
++ ++++|++++..|+++...++. .|++++.++. ++|++ +++++++|++++|| ++|.+.|+++|+
T Consensus 154 ~g~~~~~Vi~~~~~h~~~~~~~~~----~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~ 229 (497)
T 3mc6_A 154 RGITEPEIIAPVTAHAGFDKAAYY----FGMKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLG 229 (497)
T ss_dssp SCCSSCEEEEETTSCHHHHHHHHH----SCCEEEEECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTT
T ss_pred CCCCCceEEEeCCccHHHHHHHHH----cCCeEEEEecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHH
Confidence 01 238999999999999888764 4888888764 34566 78889999999995 899999999999
Q ss_pred HHHHhCCcEEEEEeccccc-----------cCC--CCCCcccceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCc
Q 001990 320 KNAHANGVKVVMATDLLAL-----------TIL--KPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGR 386 (985)
Q Consensus 320 ~~a~~~galliV~a~~~al-----------g~l--~~p~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~ 386 (985)
++||++|++++||. .++- +.+ .....+|+|++++++++++ +||+++|+++++++.++.....
T Consensus 230 ~la~~~g~~livD~-a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l----~~~~~~g~~~~~~~~~~~~~~~ 304 (497)
T 3mc6_A 230 KIAQKYKLPLHVDS-CLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYG----FAPKGSSVIMYRNSDLRMHQYY 304 (497)
T ss_dssp THHHHTTCCEEEET-TTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTT----CCCSSCEEEECSSHHHHTTTSC
T ss_pred HHHHHhCCEEEEEC-cchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhc----CCCCCceeEEecCHHHHhhhhc
Confidence 99999999999953 3221 111 2235679999999994442 3456789999988766654221
Q ss_pred eeeeeecCCCCcceEEecccccccccccccCCCccc-hhH--HHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhc
Q 001990 387 IVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT-AQA--LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK 463 (985)
Q Consensus 387 ~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t-~~~--l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~ 463 (985)
+.. ...+.. .++.++++ ... ..++.++ +..++.+|++++.+++.++++++++.|++
T Consensus 305 ~~~---~~~~~~----------------~~~~~~~g~~~~~~~~a~~aa--l~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 363 (497)
T 3mc6_A 305 VNP---AWTGGL----------------YGSPTLAGSRPGAIVVGCWAT--MVNMGENGYIESCQEIVGAAMKFKKYIQE 363 (497)
T ss_dssp CBT---TCTTSC----------------BCCSSSCSSCBHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc---cccCCC----------------cCCcCcccCCcchhHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 100 000000 01112211 112 2233333 36778889999999999999999999999
Q ss_pred -CCCEEEcCCCCcceEEEecCC--HHHHHHHHHHcCceeeeec-CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 464 -LGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVVD-SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 464 -~g~~~~~~~~~~~~~~i~~~~--~~~l~~~L~~~Gi~~~~~~-~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+.|++++..+....+.+..++ +.++.++|.++||.++... +..+|++++ .+|++|+++++++|..
T Consensus 364 ~~~g~~~~~~~~~~~v~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~-~~t~e~i~~~~~~L~~ 432 (497)
T 3mc6_A 364 NIPDLDIMGNPRYSVISFSSKTLNIHELSDRLSKKGWHFNALQKPVALHMAFT-RLSAHVVDEICDILRT 432 (497)
T ss_dssp SCTTCEECSCCCSSEEEEECTTTTHHHHHHHHHTTTCBCEECCSSCCEEEECC-TTTTCTHHHHHHHHHH
T ss_pred cCCCEEEecCCCeeEEEEeCCCCCHHHHHHHHHhCCEEEecCCCCCeEEEEEe-CCCHHHHHHHHHHHHH
Confidence 544998866666677777664 8899999999999887643 567999999 7899999999999974
No 8
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.95 E-value=4e-26 Score=272.22 Aligned_cols=383 Identities=16% Similarity=0.150 Sum_probs=262.1
Q ss_pred CCccccccCCHHHHHHHHHHHhcCcc-CcCcccccccceecccCccccccccccccccccCCCCcchhhhcHHHHHHHHH
Q 001990 560 THPVFNKYHTEHELLRYIHLLQSKEL-SLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLG 638 (985)
Q Consensus 560 ~~pv~~~~~se~e~~~~l~~l~~~~~-~~~~~~~~lGs~~~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~el~ 638 (985)
.+| ..++++.++++.++++...+. .+. +..++|+.....+............+.+.+++++ ..+++..++..+++
T Consensus 70 ~lp--~~g~~~~~i~~~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~le~~l~ 145 (514)
T 3mad_A 70 RLP--RAGLPRAEILAEIAAMGAAESPAWR-DGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHP-DLWPSTAKFEAEVV 145 (514)
T ss_dssp SCC--SSCCCHHHHHHHHHHHHHHHHHHHH-TTCBSSSCSCCCHHHHHHHHHHHHHHTTCCTTCT-TTCHHHHHHHHHHH
T ss_pred CCC--CCCCCHHHHHHHHHHHHhccCCCCC-CCceEEEecCCCCCHHHHHHHHHHHHhhcCCccc-ccChHHHHHHHHHH
Confidence 456 689999999999999865542 222 2234453211001111111111223333444444 55678888899999
Q ss_pred HHHHHHhCCC---ccc--eecChHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCCC
Q 001990 639 EWLCTITGFD---SFS--LQPNAGAAGEYAGLMVIRAYHK-ARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 639 ~~la~l~G~~---~~~--~~~~sGa~g~~a~l~air~~~~-~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~~ 712 (985)
+++++++|.+ ... +++++|+++++.++.+++.+.. .+| .++++||++...|..+...++..|++++.+|++++
T Consensus 146 ~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g-~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~~~ 224 (514)
T 3mad_A 146 AMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKG-ITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDAD 224 (514)
T ss_dssp HHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHC-CSSCEEEEETTSCTHHHHHHHHHTCEEEEECBCTT
T ss_pred HHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcC-CCCCeEEEeCccchHHHHHHHHcCCeeEEeeeCCC
Confidence 9999999988 333 7778888888777777665432 233 24589999999998888888889999999999989
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEcccccccc------C----CCCCCc
Q 001990 713 GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV------G----LTSPGY 781 (985)
Q Consensus 713 g~iDle~L~~~i~~~~~~t~~Vvi~~pn-~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~------g----~~~~g~ 781 (985)
+.+|+++|+++|+ +++++|++++|+ .+|.+. |+++|+++|+++|+++|+|++|..... + ......
T Consensus 225 ~~~d~~~Le~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~ 300 (514)
T 3mad_A 225 YRADVAAMREAIT---PNTVVVAGSAPGYPHGVVD-PIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRL 300 (514)
T ss_dssp SCBCHHHHHHHCC---TTEEEEEEETTCTTTCCCC-CHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTS
T ss_pred CCCCHHHHHHHhc---cCCEEEEEeCCCCCCcccc-CHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccC
Confidence 9999999999997 789999999995 699998 899999999999999999999852211 1 112235
Q ss_pred CCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCcc-ccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHH
Q 001990 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPV-VSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 782 ~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~-g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l 860 (985)
.|+|++++++||++. ||+++|+++++++.......... .+.+. ......+.++.. ...+.++|+.+
T Consensus 301 ~g~d~~~~s~~K~l~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~gs~~--~~~~~a~~aal 367 (514)
T 3mad_A 301 EGVTSVSADTHKYGY-----GAKGTSVILYRRPDLLHYQYFIAADWPGG------LYFSPTFAGSRP--GALSATAWAAM 367 (514)
T ss_dssp TTCCEEEECTTTTTC-----CCSSCEEEEESSHHHHTTTCEEESSCTTC------SEEESSSCSSCC--HHHHHHHHHHH
T ss_pred CCCcEEEECchhccC-----CCCCeEEEEEeCHHHhccccccccccCCC------cccCCccCCCCc--hHHHHHHHHHH
Confidence 689999999999973 45678999888654322211000 00000 000001111111 12234567788
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC
Q 001990 861 AMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP 940 (985)
Q Consensus 861 ~~lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~p 940 (985)
..++.+++.+..++..++++++.+.|++...+...++.. ..+.+... +.+..++.+.|.++||.++...+
T Consensus 368 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~---~~~~~~~~------~~~~~~l~~~L~~~Gi~v~g~~~- 437 (514)
T 3mad_A 368 LSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPL---WVIAVASD------ELNIYQVMEEMAGRGWRLNGLHR- 437 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCS---SEEEEECS------SSCHHHHHHHHHTTTCBCEEETT-
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCe---EEEEEeCC------CCCHHHHHHHHHhcCCEeccCCC-
Confidence 888889999999999999999999998732332222211 12333332 46788999999999998854333
Q ss_pred CCCEEEEeccCC-CCHHhhchHHHHHHHHHHHHHHHHHc
Q 001990 941 VPGTLMIEPTES-ESKVCHNREDLFFQILLSLTKFTTFA 978 (985)
Q Consensus 941 v~~~lris~t~~-~t~eeId~~~~~i~aL~~i~~~~~~~ 978 (985)
++.+|++++.. ++++|+| +++++|+++++++++.
T Consensus 438 -~~~~Ri~~~~~~~~~e~i~---~~l~~L~~~l~~~~~~ 472 (514)
T 3mad_A 438 -PPAFHVALTLRHTEPGVVD---RFLADLQDAVAQVRAH 472 (514)
T ss_dssp -TTEEEEECCGGGGSTTHHH---HHHHHHHHHHHHHHHC
T ss_pred -CCeEEEEEecCCCCHHHHH---HHHHHHHHHHHHHHhC
Confidence 47899999854 4669999 9999999999887654
No 9
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.94 E-value=3e-26 Score=273.29 Aligned_cols=390 Identities=13% Similarity=0.068 Sum_probs=250.7
Q ss_pred CCccccccCCHHHHHHHHHHHhcCccCcCcccccccceecccCcc---ccccccccccccccCCCCcchhhhcHHHHHHH
Q 001990 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNAT---TEMMPVTWPSFANIHPFAPADQAQGYQEMFNN 636 (985)
Q Consensus 560 ~~pv~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lGs~~~~~~~~---~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e 636 (985)
.+| .+|.+++++++.++++...+.... ...+|++.+....+. .++. ..+.+-+.++. +.+++..++..+
T Consensus 81 ~~p--~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~l----~~~~n~~~~~~-~~s~~~~~le~~ 152 (515)
T 2jis_A 81 ELR--SQGESQKQILERCRAVIRYSVKTG-HPRFFNQLFSGLDPHALAGRII----TESLNTSQYTY-EIAPVFVLMEEE 152 (515)
T ss_dssp CCC--SSCCCHHHHHHHHHHHHHHSCCTT-STTEESSSCCCCCHHHHHHHHH----HHHHCCCTTCT-TTCHHHHHHHHH
T ss_pred CCC--CCCCCHHHHHHHHHHHhcCCCCCC-CCCeEEEeeCCCCHHHHHHHHH----HHHhccCCCch-hhchHHHHHHHH
Confidence 567 588999999999999887775543 345666432211111 1111 11222222233 567889999999
Q ss_pred HHHHHHHHhCCCcc-ceecChHHHHHHHHHHHHHHHH----HhcCC--CCCCEEEEcCCCCCCcHHHHHhcCc---EEEE
Q 001990 637 LGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYH----KARGD--HHRNVCIIPVSAHGTNPATAAMCGM---KIVS 706 (985)
Q Consensus 637 l~~~la~l~G~~~~-~~~~~sGa~g~~a~l~air~~~----~~~g~--~~~~~Vlv~~~~Hg~~~~~~~~~G~---~v~~ 706 (985)
+++++++++|++.. .++.++|+++++.++.++|.+. ..+|. .++.+|++++..|.++...++..|+ +++.
T Consensus 153 ~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~ 232 (515)
T 2jis_A 153 VLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRV 232 (515)
T ss_dssp HHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEE
T ss_pred HHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHcCCCCCcEEE
Confidence 99999999999753 3566777777766666665432 11221 0122788999889888888888888 8999
Q ss_pred EeCCCCCCCCHHHHHHHHHhc---CCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-----
Q 001990 707 VGTDAKGNINIEELRKAAEAN---RDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT----- 777 (985)
Q Consensus 707 v~~~~~g~iDle~L~~~i~~~---~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~----- 777 (985)
+|+++++.+|+++|+++|++. +.++++|++++| |.+|.++ |+++|+++|+++|+|+|||+++..+.....
T Consensus 233 v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~-~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~ 311 (515)
T 2jis_A 233 VKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFD-PLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHL 311 (515)
T ss_dssp ECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC-CHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGG
T ss_pred EecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCcc-CHHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhh
Confidence 999888999999999999742 225899999998 5799998 899999999999999999999864433211
Q ss_pred CCCcCCCcEEEeCCcccccccCCCCCCcceeeeeccc--ccCc----CCCCccccCCCCCCCCCCCCCCCcccccchhhh
Q 001990 778 SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--LAPF----LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 778 ~~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~--l~~~----lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~ 851 (985)
..+..++|++++++||||+.| .|+|+++++++ +.+. .++.+.+...+. ......++.++.. +...
T Consensus 312 ~~g~~~aD~v~~s~hK~l~~p-----~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~~~~~~~~~---~rr~ 382 (515)
T 2jis_A 312 LDGIQRADSVAWNPHKLLAAG-----LQCSALLLQDTSNLLKRCHGSQASYLFQQDKFY-DVALDTGDKVVQC---GRRV 382 (515)
T ss_dssp GTTGGGCSEEEECTTSTTCCC-----SCCEEEEESCCSCHHHHHHCC---------CCS-CGGGCCGGGCSCS---SCCC
T ss_pred cCCCccCCEEEECcccccCCC-----CCeeEEEEeChHHHHHHHhcCCchhccCCcccc-cccCCCCCCCCCC---CCcc
Confidence 112237899999999998533 25789999866 5432 333332221100 0000111111111 1111
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEEEEecCccccCC----CC--------
Q 001990 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAG----IE-------- 919 (985)
Q Consensus 852 ~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~vv~~~~~~~~~g----~~-------- 919 (985)
.+...|+.++.+|.+|+.+..++..++++++.+.|++...+...++ +....+++...+- ...+ .+
T Consensus 383 ~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~--~~~~~v~f~~~p~-~~~~~~~~~~~~~~l~~~ 459 (515)
T 2jis_A 383 DCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVME--PEFVNVCFWFVPP-SLRGKQESPDYHERLSKV 459 (515)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSC--CSSSEEEEEECCG-GGTTCTTSTTHHHHHHTH
T ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC--CCeeEEEEEEeCc-cccccccchhHHHHHHHH
Confidence 1345677788889999999999999999999999987323322222 1223355543110 0001 11
Q ss_pred HHHHHHHHHHCCCccCCC-CCC-CCCEEEEec-cCCCCHHhhchHHHHHHHHHHHHH
Q 001990 920 PEDVAKRLMDYGFHGPTM-SWP-VPGTLMIEP-TESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 920 ~~~l~~~L~e~Gi~~~~~-~~p-v~~~lris~-t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
...+.+.|.+.|+..... ..+ ..+.+|+++ +..+|++||| +++++|+++.+
T Consensus 460 ~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid---~~~~~l~~~~~ 513 (515)
T 2jis_A 460 APVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMD---FLLNELERLGQ 513 (515)
T ss_dssp HHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHH---HHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHH---HHHHHHHHHHh
Confidence 113677788889764211 011 125799999 8999999999 99999988754
No 10
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.94 E-value=1.4e-25 Score=266.76 Aligned_cols=392 Identities=13% Similarity=0.068 Sum_probs=254.8
Q ss_pred CCccccccCCHHHHHHHHHHHhcCccCcCcccccccceecccCcc---ccccccccccccccCCCCcchhhhcHHHHHHH
Q 001990 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNAT---TEMMPVTWPSFANIHPFAPADQAQGYQEMFNN 636 (985)
Q Consensus 560 ~~pv~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lGs~~~~~~~~---~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e 636 (985)
.+| ..+.+++++++.++++...+..+ ....++|+-+...... .++....... +.+.| +.+++..++..+
T Consensus 68 ~~p--~~~~~~~~~~~~~~~~~~~~~~~-~~p~f~~~~~~~~~~~~~~~e~l~~~~~~--~~~~~---~~~p~~~~le~~ 139 (511)
T 3vp6_A 68 ELS--DHPESLEQILVDCRDTLKYGVRT-GHPRFFNQLSTGLDIIGLAGEWLTSTANT--NMFTY---EIAPVFVLMEQI 139 (511)
T ss_dssp CCC--SSCCCHHHHHHHHHHHHHTSCCT-TSTTEESSSSCCCCHHHHHHHHHHHHHCC--CSSCT---TTCHHHHHHHHH
T ss_pred CCC--CCCCCHHHHHHHHHHHhhccCCC-CCCCceEeecCCCcHHHHHHHHHHHHhcc--CCCCc---ccCchHHHHHHH
Confidence 567 56899999999999998887665 3456777422111111 1222111111 11223 346788888999
Q ss_pred HHHHHHHHhCCCc---cceecChHHHHHHHHHHHHHHHH----HhcCC--CCCCEEEEcCCCCCCcHHHHHhcCc---EE
Q 001990 637 LGEWLCTITGFDS---FSLQPNAGAAGEYAGLMVIRAYH----KARGD--HHRNVCIIPVSAHGTNPATAAMCGM---KI 704 (985)
Q Consensus 637 l~~~la~l~G~~~---~~~~~~sGa~g~~a~l~air~~~----~~~g~--~~~~~Vlv~~~~Hg~~~~~~~~~G~---~v 704 (985)
+.+|+++++|++. ..+++++|++++..++++++... ..+|. .++++|++++..|.++...++..|+ ++
T Consensus 140 ~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~ 219 (511)
T 3vp6_A 140 TLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNV 219 (511)
T ss_dssp HHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGE
T ss_pred HHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHcCCCCCcE
Confidence 9999999999983 34667788888877777666432 12231 1456788999999988888888888 99
Q ss_pred EEEeCCCCCCCCHHHHHHHHHhc---CCCeEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCC---
Q 001990 705 VSVGTDAKGNINIEELRKAAEAN---RDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT--- 777 (985)
Q Consensus 705 ~~v~~~~~g~iDle~L~~~i~~~---~~~t~~Vvi~~pn-~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~--- 777 (985)
+.+|+++++.+|+++|+++|++. +..+++|++++|+ .+|.++ |+++|+++|++||+|+|||+++..+.....
T Consensus 220 ~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd-~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~ 298 (511)
T 3vp6_A 220 ILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFD-PIQEIADICEKYNLWLHVDAAWGGGLLMSRKHR 298 (511)
T ss_dssp EEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBC-CHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTG
T ss_pred EEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccc-cHHHHHHHHHHcCCEEEEEccchhhHhhChhhh
Confidence 99999988999999999999742 1128889999985 699998 899999999999999999999864433111
Q ss_pred --CCCcCCCcEEEeCCcccccccCCCCCCcceeeeeccc-ccCc----CCCCccccCCCCCCCCCCCCCCCcccccchhh
Q 001990 778 --SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPF----LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 778 --~~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~-l~~~----lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~ 850 (985)
..+..++|++++++||||+.|. +.|++++++. +.+. .++++....... ......+...+.. +..
T Consensus 299 ~~~~g~~~aDsv~~~~hK~l~~p~-----g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~~~~~~~~~---~r~ 369 (511)
T 3vp6_A 299 HKLNGIERANSVTWNPHKMMGVLL-----QCSAILVKEKGILQGCNQMHASYLFQQDKHY-DVSYDTGDKAIQC---GRH 369 (511)
T ss_dssp GGGTTGGGCSEEEECTTSTTCCCS-----CCEEEEESSTTHHHHHHCCCCTTTCCSSCSS-CGGGCCGGGSSCS---SCC
T ss_pred hhccCCccCCEEEECcccccCCCc-----CeEEEEEeCHHHHHHHhccCCccccCccccc-ccccCccCCCCCC---CCc
Confidence 0134568999999999996553 5677777753 3221 222221110000 0000000001111 111
Q ss_pred hHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc--cCCeeEcCCCCceeEEEEEEecCccc-cCCC---------
Q 001990 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKN-TAGI--------- 918 (985)
Q Consensus 851 ~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~--~~~i~~~g~~~~~~~~~vv~~~~~~~-~~g~--------- 918 (985)
..+...|+++..+|.+|+.+..++..++++++++.|++ ++++..+ ..+....+++.+.+... ..+.
T Consensus 370 ~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~--~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~ 447 (511)
T 3vp6_A 370 VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFN--GEPEHTNVCFWYIPQSLRGVPDSPQRREKLH 447 (511)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSS--SCCSSSCEEEEECCGGGSSCCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEec--CCCCeEEEEEEEeCccccccccchhHHHHHH
Confidence 23456788899999999999999999999999999987 3444321 01223334554421100 0000
Q ss_pred -CHHHHHHHHHHCCCccCCCCCCCC---CEEEEec-cCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 919 -EPEDVAKRLMDYGFHGPTMSWPVP---GTLMIEP-TESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 919 -~~~~l~~~L~e~Gi~~~~~~~pv~---~~lris~-t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
...++.++|.++|+.+.. ..++. +.+|+++ +..+|++||+ +++++|+++.+.+
T Consensus 448 ~~~~~l~~~L~~~G~~~~~-~~~~~~~~~~lRi~~~~~~~t~~di~---~ll~~i~~~~~~~ 505 (511)
T 3vp6_A 448 KVAPKIKALMMESGTTMVG-YQPQGDKANFFRMVISNPAATQSDID---FLIEEIERLGQDL 505 (511)
T ss_dssp HHHHHHHHHHHHHTSCEEE-EEEETTEEEEEEECCCCTTCCHHHHH---HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhcCCEEEE-EEEeCCceEEEEEEecCCCCCHHHHH---HHHHHHHHHHHhh
Confidence 134688999999976432 11111 3699999 7889999999 9999998876543
No 11
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=3.8e-24 Score=244.75 Aligned_cols=363 Identities=17% Similarity=0.195 Sum_probs=248.8
Q ss_pred cccCCHHHHHHHHHHHhcCccCcCcccccccceecccCccc-cccccccccccccCCCCcchhhhcHHHHHHHHHHHHHH
Q 001990 565 NKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATT-EMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCT 643 (985)
Q Consensus 565 ~~~~se~e~~~~l~~l~~~~~~~~~~~~~lGs~~~~~~~~~-~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~el~~~la~ 643 (985)
..+.++.++++.+.++...+..+. +..++|+++.+.++.. +... ++.......+ ...++..+...++++++++
T Consensus 7 ~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~a~~----~~~~~~~~~~-~~~~~~~~~~~~l~~~la~ 80 (397)
T 3f9t_A 7 EKGVSEKEILEELKKYRSLDLKYE-DGNIFGSMCSNVLPITRKIVD----IFLETNLGDP-GLFKGTKLLEEKAVALLGS 80 (397)
T ss_dssp SSCCCHHHHHHHHHHHHTTSCCGG-GTCBCSCSCCCCCTHHHHHHH----HHTTCCTTSG-GGBHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhccCCCCC-CCCeEEEecCCCcHHHHHHHH----HHHhhcCCCc-ccChhHHHHHHHHHHHHHH
Confidence 468899999999999988776554 2356776544333321 1110 1111011111 2245778888999999999
Q ss_pred HhCCCccc-eecChHHHHHHHHHHHHHHHHHh---c--CCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCCCCCCCH
Q 001990 644 ITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKA---R--GDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINI 717 (985)
Q Consensus 644 l~G~~~~~-~~~~sGa~g~~a~l~air~~~~~---~--g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~~g~iDl 717 (985)
++|.+... +++++|+++++.++.+++..+.. . +.+++++|+++...|..+...++..|++++.+|.++++.+|+
T Consensus 81 ~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~ 160 (397)
T 3f9t_A 81 LLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKEDYTIDE 160 (397)
T ss_dssp HTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCTTSSBCH
T ss_pred HhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCCCCcCCH
Confidence 99998754 66778888776666665542110 0 113578999999999888888888999999999998899999
Q ss_pred HHHHHHHHhcCC-CeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCC----------C---CcC
Q 001990 718 EELRKAAEANRD-NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS----------P---GYI 782 (985)
Q Consensus 718 e~L~~~i~~~~~-~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~----------~---g~~ 782 (985)
++|+++++ + ++++|++++| |++|.+. |+++|+++|+++|+++|+|++|..+..+... + ..
T Consensus 161 ~~l~~~i~---~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~- 235 (397)
T 3f9t_A 161 KFVKDAVE---DYDVDGIIGIAGTTELGTID-NIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL- 235 (397)
T ss_dssp HHHHHHHH---HSCCCEEEEEBSCTTTCCBC-CHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-
T ss_pred HHHHHHHh---hcCCeEEEEECCCCCCCCCC-CHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-
Confidence 99999998 4 7889999998 5799998 8999999999999999999998532221110 1 22
Q ss_pred CCcEEEeCCcccccccCCCCCCcceeeeeccc-ccCcCC---CCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHH
Q 001990 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPFLP---SHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 783 g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~-l~~~lp---g~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a 858 (985)
++|++++++||+++ +|.++|+++++++ +.+.+. ....+. . .....++..+. .....++
T Consensus 236 ~~~~~~~s~~K~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~~~--~~~~~~a 297 (397)
T 3f9t_A 236 GVDSITIDPHKMGH-----CPIPSGGILFKDIGYKRYLDVDAPYLTET-R----------QATILGTRVGF--GGACTYA 297 (397)
T ss_dssp TCSEEECCTTTTTC-----CCSSCEEEEESSGGGGGGTCEECTTSSSS-E----------ECSSCSSCCSH--HHHHHHH
T ss_pred cCCeEEEccccccC-----CCCCceEEEEeCHHHHHhhccCCccccCC-C----------ccccccccccc--hHHHHHH
Confidence 78999999999874 3346777877654 444332 111100 0 00000111111 2233455
Q ss_pred HHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC
Q 001990 859 YIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 859 ~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~ 937 (985)
.+..++.+++.+..++..++++++.+.|++ ++.+..+ + ..+.+.+.+. +..++.+.|.++||.+...
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~---~~~~~~~~~~--------~~~~~~~~l~~~gi~v~~~ 365 (397)
T 3f9t_A 298 VLRYLGREGQRKIVNECMENTLYLYKKLKENNFKPVIE-P---ILNIVAIEDE--------DYKEVCKKLRDRGIYVSVC 365 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBSSC-C---SSSEEEEECT--------THHHHHHHHHHTTCBCEEC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcC-C---CccEEEEEeC--------CHHHHHHHHHhCCeEEecc
Confidence 566667778888888888999999999987 4443322 1 1223445543 3678999999999987544
Q ss_pred CCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHH
Q 001990 938 SWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 938 ~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
.. ++.+|++++..+|++|++ +++++|+++++
T Consensus 366 ~~--~~~~Ri~~~~~~~~e~i~---~~~~~l~~~l~ 396 (397)
T 3f9t_A 366 NC--VKALRIVVMPHIKREHID---NFIEILNSIKR 396 (397)
T ss_dssp SS--SSEEEEECCTTCCHHHHH---HHHHHHHHHC-
T ss_pred CC--CCEEEEEEcCCCCHHHHH---HHHHHHHHhhC
Confidence 33 489999999999999999 99999988754
No 12
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.94 E-value=9.2e-25 Score=258.11 Aligned_cols=387 Identities=13% Similarity=0.078 Sum_probs=253.0
Q ss_pred CCccccccCCHHHHHHHHHHHhcCccCcCcccccccce--ecccCc-cccccccccccccccCCCCcchhhhcHHHHHHH
Q 001990 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSC--TMKLNA-TTEMMPVTWPSFANIHPFAPADQAQGYQEMFNN 636 (985)
Q Consensus 560 ~~pv~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lGs~--~~~~~~-~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e 636 (985)
.+| ..|.+.+++++.+.+....+........++|.- ....+. ..++....... +...| +.+++..++..+
T Consensus 50 ~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~n~--~~~~~---~~~p~~~~lE~~ 122 (481)
T 4e1o_A 50 SAP--EDPDSWDSIFGDIERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINC--LGFTW---ASSPACTELEMN 122 (481)
T ss_dssp SCC--SSCCCHHHHHHHHHHHTGGGCCCTTSTTBCSSSCCCCCHHHHHHHHHHHHHCC--CCSST---TTCHHHHHHHHH
T ss_pred CCC--CCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeCCCCCCHHHHHHHHHHHHhCc--ccCCc---CCCcHHHHHHHH
Confidence 567 578999999999999866653322344556632 111111 11221111111 12223 346788999999
Q ss_pred HHHHHHHHhCCCcc-----------ceecChHHHHHHHHHHHHHHHHHh----cCC-------CCCCEEEEcCCCCCCcH
Q 001990 637 LGEWLCTITGFDSF-----------SLQPNAGAAGEYAGLMVIRAYHKA----RGD-------HHRNVCIIPVSAHGTNP 694 (985)
Q Consensus 637 l~~~la~l~G~~~~-----------~~~~~sGa~g~~a~l~air~~~~~----~g~-------~~~~~Vlv~~~~Hg~~~ 694 (985)
+.+|+++++|.+.. .+++++|+++++.+++++|..... .+. .++++|++++.+|.++.
T Consensus 123 v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 202 (481)
T 4e1o_A 123 VMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVE 202 (481)
T ss_dssp HHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHH
T ss_pred HHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHH
Confidence 99999999999853 266788898888888877754321 111 14568889999998888
Q ss_pred HHHHhcCcEEEEEeCCCCCCCCHHHHHHHHHhcC---CCeEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEcccc
Q 001990 695 ATAAMCGMKIVSVGTDAKGNINIEELRKAAEANR---DNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANM 770 (985)
Q Consensus 695 ~~~~~~G~~v~~v~~~~~g~iDle~L~~~i~~~~---~~t~~Vvi~~pn-~~G~i~~di~eI~~la~~~g~lliVD~a~~ 770 (985)
+.+.+.|++++.||+++++.+|+++|+++|++.. ..+.+|+++.++ .+|.++ |+++|+++|++||+|+|||+|+.
T Consensus 203 ~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id-~l~~I~~la~~~~~~lhvDaA~g 281 (481)
T 4e1o_A 203 KAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFD-CLSELGPICAREGLWLHIDAAYA 281 (481)
T ss_dssp HHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC-CHHHHHHHHHHHTCEEEEECTTG
T ss_pred HHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcC-CHHHHHHHHHHcCCeEEeehhhH
Confidence 8888899999999998889999999999997421 126778888875 589998 89999999999999999999985
Q ss_pred ccccCCC--CC---CcCCCcEEEeCCcccccccCCCCCCcceeeeeccc-c-cCcC---CCCccccCCCCCCCCCCCCCC
Q 001990 771 NAQVGLT--SP---GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-L-APFL---PSHPVVSTGGIPAPEKSQPLG 840 (985)
Q Consensus 771 ~~~~g~~--~~---g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~-l-~~~l---pg~~~g~~~~~~~~~~~~~t~ 840 (985)
.+..... .. +...+|++++++||||+.|+ +.|++++++. + .+.+ ++.+.....+ ........+.
T Consensus 282 ~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~-----g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~-~~~~~~~~~~ 355 (481)
T 4e1o_A 282 GTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHF-----DCTGFWVKDKYKLQQTFSVNPIYLRHANSG-VATDFMHWQI 355 (481)
T ss_dssp GGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS-----SCEEEEESBHHHHHTTTCCCCGGGCCTTTT-TSCCGGGGSS
T ss_pred HHHHhChhhHHHhcCcccCCEEEEChHHhcCCCC-----ceEEEEEeCHHHHHHHhcCCchhccCcccC-CCCCcccccc
Confidence 4321110 11 11235999999999997664 4566777753 2 2222 1111100000 0000000000
Q ss_pred CcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc--cCCeeEcCCCCceeEEEEEEecCccccCCC
Q 001990 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGI 918 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~--~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~ 918 (985)
. ++ ....+...|+.+..+|.+|+.+..++..++++++++.|++ ++++. .+ +..+.+++++.. .+.
T Consensus 356 ~-~~----r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~--~~--~~~~~v~f~~~~----~~~ 422 (481)
T 4e1o_A 356 P-LS----RRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIP--AK--RHLGLVVFRLKG----PNS 422 (481)
T ss_dssp S-SC----CCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECC--SC--CCSSEEEEEESS----CHH
T ss_pred c-CC----CCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe--cC--CceeEEEEEeCC----chH
Confidence 1 11 1122455788899999999999999999999999999987 34432 22 223445666641 112
Q ss_pred CHHHHHHHHHHCCCcc-CCCCCCCCCEEEEeccCC-CCHHhhchHHHHHHHHHHHHHHHH
Q 001990 919 EPEDVAKRLMDYGFHG-PTMSWPVPGTLMIEPTES-ESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 919 ~~~~l~~~L~e~Gi~~-~~~~~pv~~~lris~t~~-~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
...++.++|.++|+.. ....+.-...+|++++.. +|++||+ +++++|+++.+++.
T Consensus 423 ~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~---~~~~~i~~~~~~l~ 479 (481)
T 4e1o_A 423 LTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDIL---RDWNLIRDAATLIL 479 (481)
T ss_dssp HHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHH---HHHHHHHHHHHHHh
Confidence 3568899999988653 211111125799998755 5899999 99999999887654
No 13
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.94 E-value=8.5e-25 Score=260.73 Aligned_cols=359 Identities=14% Similarity=0.072 Sum_probs=242.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCc--cceecCCCCCCCCCcHHHHHHHHhCCcccccc-CCC--hhhHhhHHHHH
Q 001990 138 SMKFSKFDEGLTESQMIEHMQKLASMNKV--YKSFIGMGYYNTHVPPVILRNIMENPAWYTQY-TPY--QAEIAQGRLES 212 (985)
Q Consensus 138 ~~~lp~~~~~~se~e~~~~~~~~~~~n~~--~~~~lG~g~~~~~~p~~v~~~i~~~~~~~t~~-~py--~~e~sqg~l~~ 212 (985)
+.++| .+++++.+++++++++...+.. ...|++....+ ..|..+.. +|+++| +|+ +.+.+++..+.
T Consensus 79 ~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~------~~l~~~~n~~~~~~~~s~~~~~l 149 (515)
T 2jis_A 79 DLELR--SQGESQKQILERCRAVIRYSVKTGHPRFFNQLFSG-LDPHALAG------RIITESLNTSQYTYEIAPVFVLM 149 (515)
T ss_dssp CCCCC--SSCCCHHHHHHHHHHHHHHSCCTTSTTEESSSCCC-CCHHHHHH------HHHHHHHCCCTTCTTTCHHHHHH
T ss_pred ccCCC--CCCCCHHHHHHHHHHHhcCCCCCCCCCeEEEeeCC-CCHHHHHH------HHHHHHhccCCCchhhchHHHHH
Confidence 56777 5789999999999998877643 22355433222 24444432 344444 454 56788999999
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhh-----cCCCC------EEEEcCCCChhHHHHHHHhhcCCCe
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ-----KGKKK------TFIIASNCHPQTIDICITRADGFDI 281 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~-----~~~g~------~Vlv~~~~h~s~~~~~~~~a~~~gi 281 (985)
..++++++++++|++..++.+++|||.+...++.+.+.. +.+|+ +|++++..|+++...++.+ +.|.
T Consensus 150 e~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~--g~g~ 227 (515)
T 2jis_A 150 EEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFL--GLGT 227 (515)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT--TSCG
T ss_pred HHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHc--CCCC
Confidence 999999999999999888999999998776665554310 11243 8999999999999998754 2343
Q ss_pred -EEEEeCc--------hhhhc-cCC------CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCCC
Q 001990 282 -KVVVSDL--------KDIDY-KSG------DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPP 344 (985)
Q Consensus 282 -~v~~~~~--------~~l~~-l~~------~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~p 344 (985)
+++.++. ++|++ +++ ++++|++++| |.+|.+.|+++|+++||++|++++||+ .++.+.+..+
T Consensus 228 ~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~-a~~~~~~~~~ 306 (515)
T 2jis_A 228 DSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDA-AWGGSVLLSQ 306 (515)
T ss_dssp GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEE-TTGGGGGGCT
T ss_pred CcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEeh-hhhhHHHhCh
Confidence 6777654 34555 433 4899999998 689999999999999999999999954 2344433222
Q ss_pred -------CcccceEEEecC-ccccccCCCCCCceEEEEEchh--hHhc----CCCceeeeeecCCCCc-ceEEecccccc
Q 001990 345 -------GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQE--YKRM----MPGRIVGVSIDSSGKP-ALRVAMQTREQ 409 (985)
Q Consensus 345 -------~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~--~~~~----lp~~~vG~s~d~~g~~-~~~l~l~tre~ 409 (985)
+-.++|++++++ |++++|. ++|+++++++ ++++ .++.+.|...+..+.. ...+. -+
T Consensus 307 ~~~~~~~g~~~aD~v~~s~hK~l~~p~-----g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~----~~ 377 (515)
T 2jis_A 307 THRHLLDGIQRADSVAWNPHKLLAAGL-----QCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKV----VQ 377 (515)
T ss_dssp TTGGGGTTGGGCSEEEECTTSTTCCCS-----CCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGC----SC
T ss_pred hhHhhcCCCccCCEEEECcccccCCCC-----CeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCC----CC
Confidence 224899999999 6665553 3689999876 6664 4665655322111100 00011 13
Q ss_pred cccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEec-C-----
Q 001990 410 HIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKC-A----- 483 (985)
Q Consensus 410 ~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~-~----- 483 (985)
..||..+ ..+++. +..+|.+|++++.+++.++++++++.|+++.+++++.++.+..|+|.. +
T Consensus 378 ~~rr~~a-------l~~~~~-----l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f~~~p~~~~~ 445 (515)
T 2jis_A 378 CGRRVDC-------LKLWLM-----WKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCFWFVPPSLRG 445 (515)
T ss_dssp SSCCCCH-------HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEEEECCGGGTT
T ss_pred CCCcccH-------HHHHHH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEEEEeCccccc
Confidence 4444321 223222 255678899999999999999999999998449998666566677743 1
Q ss_pred -----C-H-------HHHHHHHHHcCcee-ee--ec--CCeEEEEe-ccCCCHHHHHHHHHHHhC
Q 001990 484 -----D-A-------HAIASAAYKIEMNL-RV--VD--SNTVTASF-DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 484 -----~-~-------~~l~~~L~~~Gi~~-~~--~~--~~~lris~-~~~~t~edid~ll~~l~~ 529 (985)
. . ..+.+.|.+.|+.+ .. .. .+.+|+++ ++++|++|+++++++|..
T Consensus 446 ~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~ 510 (515)
T 2jis_A 446 KQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELER 510 (515)
T ss_dssp CTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1 1 13677788889754 22 12 35899999 899999999999999963
No 14
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.93 E-value=1.1e-24 Score=258.07 Aligned_cols=389 Identities=14% Similarity=0.100 Sum_probs=248.1
Q ss_pred CCccccccCCHHHHHHHHHHHhcCccCcCcccccccceecccCc---cccccccccccccccCCCCcchhhhcHHHHHHH
Q 001990 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNA---TTEMMPVTWPSFANIHPFAPADQAQGYQEMFNN 636 (985)
Q Consensus 560 ~~pv~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lGs~~~~~~~---~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e 636 (985)
.+| .++.+++++++.+.+....+........++|+-+..... ..++.. .+.+-+.+. .+.+++..++..+
T Consensus 45 ~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~----~~~n~~~~~-~~~~~~~~~le~~ 117 (486)
T 1js3_A 45 TAP--QEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLC----GAIGCIGFS-WAASPACTELETV 117 (486)
T ss_dssp SCC--SSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSSCCCCCHHHHHHHHHH----HHHCCCCSS-GGGCHHHHHHHHH
T ss_pred cCC--CCCCCHHHHHHHHHHHHhcCCCCCCCCCceEeCCCCCCHHHHHHHHHH----HHhCcCccc-cccChhHHHHHHH
Confidence 457 578999999999999776664433345667742211111 111111 111111111 1345667788888
Q ss_pred HHHHHHHHhCCCcc----------ceecChHHHHHHHHHHHHHHHHHh----c-CC------CCCCEEEEcCCCCCCcHH
Q 001990 637 LGEWLCTITGFDSF----------SLQPNAGAAGEYAGLMVIRAYHKA----R-GD------HHRNVCIIPVSAHGTNPA 695 (985)
Q Consensus 637 l~~~la~l~G~~~~----------~~~~~sGa~g~~a~l~air~~~~~----~-g~------~~~~~Vlv~~~~Hg~~~~ 695 (985)
+.+++++++|++.. .+++++|++++..++++++..... . |. .++..|+++...|.++..
T Consensus 118 ~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~ 197 (486)
T 1js3_A 118 MMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVER 197 (486)
T ss_dssp HHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHH
T ss_pred HHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHH
Confidence 99999999999853 356677887776666665532111 0 10 001137789998988888
Q ss_pred HHHhcCcEEEEEeCCCCCCCCHHHHHHHHHhcCC---CeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccc
Q 001990 696 TAAMCGMKIVSVGTDAKGNINIEELRKAAEANRD---NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMN 771 (985)
Q Consensus 696 ~~~~~G~~v~~v~~~~~g~iDle~L~~~i~~~~~---~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~ 771 (985)
.++..|++++.+|+++++.+|+++|+++|++... ...+|++++| |.+|.++ |+++|+++|+++|+|+|||+|+..
T Consensus 198 ~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~-~l~~I~~la~~~~~~lhvD~a~g~ 276 (486)
T 1js3_A 198 AGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFD-NLLEVGPICHEEDIWLHVDAAYAG 276 (486)
T ss_dssp HHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC-CHHHHHHHHHHTTCEEEEECTTGG
T ss_pred HHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCC-CHHHHHHHHHHcCCEEEEehhhHH
Confidence 8889999999999988899999999999973210 1248888998 4799998 899999999999999999999864
Q ss_pred cccCCCC-----CCcCCCcEEEeCCcccccccCCCCCCcceeeeeccc--ccCcC---CCCccccCCC-CCCCC-CCCCC
Q 001990 772 AQVGLTS-----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--LAPFL---PSHPVVSTGG-IPAPE-KSQPL 839 (985)
Q Consensus 772 ~~~g~~~-----~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~--l~~~l---pg~~~g~~~~-~~~~~-~~~~t 839 (985)
+...... .+..++|++++++|||++.| +++|++++++. +.+.+ +.++.+.... ..... .....
T Consensus 277 ~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p-----~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~ 351 (486)
T 1js3_A 277 SAFICPEFRHLLNGVEFADSFNFNPHKWLLVN-----FDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQL 351 (486)
T ss_dssp GGGGSTTTGGGGTTGGGCSEEEECHHHHSSCC-----SSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSS
T ss_pred HHHHCHHHHHHhcCccccCeeEEchhhhcCCC-----cceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCC
Confidence 3221111 12246899999999999654 35788888754 23333 2222111000 00000 00000
Q ss_pred CCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEEEEecCccccCCCC
Q 001990 840 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIE 919 (985)
Q Consensus 840 ~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~ 919 (985)
. .+ ....+...|+++..+|.+|+.+..++..++++++.+.|++...+....+ +..+.+++.+. +.+
T Consensus 352 -~-~~----rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~--~~~~~v~f~~~------~~~ 417 (486)
T 1js3_A 352 -P-LG----RRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAE--VTLGLVCFRLK------GSD 417 (486)
T ss_dssp -C-SC----CCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSC--CCSSEEEEEES------SCH
T ss_pred -C-CC----CchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC--CceeEEEEEec------ChH
Confidence 0 11 1112345678888889999999999999999999999987323322221 22344556653 211
Q ss_pred --HHHHHHHHHHCCCccC-CCCCCCCCEEEEec-cCCCCHHhhchHHHHHHHHHHHHHHHHHc
Q 001990 920 --PEDVAKRLMDYGFHGP-TMSWPVPGTLMIEP-TESESKVCHNREDLFFQILLSLTKFTTFA 978 (985)
Q Consensus 920 --~~~l~~~L~e~Gi~~~-~~~~pv~~~lris~-t~~~t~eeId~~~~~i~aL~~i~~~~~~~ 978 (985)
..++.++|.++|+... ...+...+.+|+++ ...+|++||+ ++++.|+++.+++.+.
T Consensus 418 ~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~---~~~~~l~~~~~~~~~~ 477 (486)
T 1js3_A 418 GLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVR---LAWEHIRGLAAELLAA 477 (486)
T ss_dssp HHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHH---HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHH---HHHHHHHHHHHHHHhh
Confidence 4778999998887642 11121236899997 4568999999 9999999998876543
No 15
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.93 E-value=3.7e-25 Score=263.16 Aligned_cols=391 Identities=13% Similarity=0.073 Sum_probs=248.7
Q ss_pred CCccccccCCHHHHHHHHHHHhcCccCcCcccccccceecccCcc---ccccccccccccccCCCCcchhhhcHHHHHHH
Q 001990 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNAT---TEMMPVTWPSFANIHPFAPADQAQGYQEMFNN 636 (985)
Q Consensus 560 ~~pv~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lGs~~~~~~~~---~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~e 636 (985)
.+| .++.+++++++.++++...+.... ...++++.+...... .++.. .+.+.+.+.. +.+++..++..+
T Consensus 65 ~~p--~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~l~----~~~n~~~~~~-~~~~~~~~le~~ 136 (504)
T 2okj_A 65 ELS--DHPESLEQILVDCRDTLKYGVRTG-HPRFFNQLSTGLDIIGLAGEWLT----STANTNMFTY-EIAPVFVLMEQI 136 (504)
T ss_dssp CCC--SSCCCHHHHHHHHHHHHHTSCCTT-CTTEESSSSCCCCHHHHHHHHHH----HHHCCBSSCT-TTCHHHHHHHHH
T ss_pred CCC--CCCCCHHHHHHHHHHHhhccCCCC-CCCEEEEccCCCCHHHHHHHHHH----HhhccCCCch-hhChHHHHHHHH
Confidence 566 578999999999999887765433 345666432211111 11111 1222222222 445677777888
Q ss_pred HHHHHHHHhCCC--cc-ceecChHHHHHHHHHHHHHHHH----HhcCCC-CCC-EEEEcCCCCCCcHHHHHhcCc---EE
Q 001990 637 LGEWLCTITGFD--SF-SLQPNAGAAGEYAGLMVIRAYH----KARGDH-HRN-VCIIPVSAHGTNPATAAMCGM---KI 704 (985)
Q Consensus 637 l~~~la~l~G~~--~~-~~~~~sGa~g~~a~l~air~~~----~~~g~~-~~~-~Vlv~~~~Hg~~~~~~~~~G~---~v 704 (985)
+.+++++++|++ .. .++.++|++++..++.+++.+. ..+|.. ..+ +|+++...|.++...+...|+ ++
T Consensus 137 ~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~g~~~v 216 (504)
T 2okj_A 137 TLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNV 216 (504)
T ss_dssp HHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGE
T ss_pred HHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcCCCcccE
Confidence 889999999998 43 4566777877766666655321 112210 014 788899999888888887776 89
Q ss_pred EEEeCCCCCCCCHHHHHHHHHhc---CCCeEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCC----
Q 001990 705 VSVGTDAKGNINIEELRKAAEAN---RDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL---- 776 (985)
Q Consensus 705 ~~v~~~~~g~iDle~L~~~i~~~---~~~t~~Vvi~~pn-~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~---- 776 (985)
+.+|+++++.+|+++|+++|++. +.++++|++++|+ .+|.++ |+++|+++|+++|+|+|||+++..+....
T Consensus 217 ~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~-~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~ 295 (504)
T 2okj_A 217 ILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFD-PIQEIADICEKYNLWLHVDAAWGGGLLMSRKHR 295 (504)
T ss_dssp EEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBC-CHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTG
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcC-CHHHHHHHHHHcCCEEEEehhhhhHHHhCHhhH
Confidence 99999888999999999999732 1268999999984 699998 89999999999999999999986433210
Q ss_pred -CCCCcCCCcEEEeCCcccccccCCCCCCcceeeeecc-cccC----cCCCCccccCCCCCCCCCCCCCCCcccccchhh
Q 001990 777 -TSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAP----FLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 777 -~~~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~-~l~~----~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~ 850 (985)
...+..++|++++++||||+.| .++|++++++ ++.+ ..++.+.+...+.. .....+...+..+ ..
T Consensus 296 ~~~~g~~~~D~i~~~~hK~~~~p-----~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~---rr 366 (504)
T 2okj_A 296 HKLNGIERANSVTWNPHKMMGVL-----LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYD-VSYDTGDKAIQCG---RH 366 (504)
T ss_dssp GGGTTGGGCSEEEECTTSTTCCC-----SCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSC-GGGCCGGGSSCSS---CB
T ss_pred hhcCCcccCCEEEECchhhcCCC-----cceEEEEEECHHHHHHHhcCCCccccCCccccc-CcCCcccCCCCCC---CC
Confidence 0122347899999999998544 2578899886 3432 23333322110000 0000000001100 01
Q ss_pred hHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc--cCCeeEcCCCCceeEEEEEEecCccccCC-----------
Q 001990 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAG----------- 917 (985)
Q Consensus 851 ~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~--~~~i~~~g~~~~~~~~~vv~~~~~~~~~g----------- 917 (985)
......|+.+..+|.+|+.+..++..++++++.+.|++ ++++...++ +....+++...+.. ..+
T Consensus 367 ~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~--p~~~~v~f~~~~~~-~~~~~~~~~~~~~~ 443 (504)
T 2okj_A 367 VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGE--PEHTNVCFWYIPQS-LRGVPDSPQRREKL 443 (504)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSC--CSSSCEEEEECCGG-GSSCCCCHHHHHHH
T ss_pred ccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCC--CCeEEEEEEEeCcc-ccccccchhhHHHH
Confidence 11234567788889999999999999999999999987 344332111 22223445432100 000
Q ss_pred -CCHHHHHHHHHHCCCc-cCCCCCCC-CCEEEEecc-CCCCHHhhchHHHHHHHHHHHHHH
Q 001990 918 -IEPEDVAKRLMDYGFH-GPTMSWPV-PGTLMIEPT-ESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 918 -~~~~~l~~~L~e~Gi~-~~~~~~pv-~~~lris~t-~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
....++.++|.++|+. +....+.- .+.+|++++ ..+|++||| +++++|+++.++
T Consensus 444 ~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~---~~~~~l~~~~~~ 501 (504)
T 2okj_A 444 HKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDID---FLIEEIERLGQD 501 (504)
T ss_dssp TTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHH---HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHH---HHHHHHHHHHHH
Confidence 0135788899999964 32111111 257999996 899999999 999999887654
No 16
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.93 E-value=1.4e-24 Score=255.99 Aligned_cols=398 Identities=14% Similarity=0.073 Sum_probs=254.1
Q ss_pred CCCccCCCCCCCCccccccCCHHHHHHHHHHHhcCccCcCcccccccceecccC--c-cccccccccccccccCCCCcch
Q 001990 549 PSGLTRESPYLTHPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLN--A-TTEMMPVTWPSFANIHPFAPAD 625 (985)
Q Consensus 549 p~~~~~~~~~~~~pv~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lGs~~~~~~--~-~~~~~~~~~~~f~~~~p~~p~e 625 (985)
|..++..=+ ..+| ..|.+.+++++.+.+....+........++|.-+.... + ..++....... +...| +
T Consensus 35 p~~l~~~~~-~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~n~--~~~~~---~ 106 (475)
T 3k40_A 35 PGYLKPLIP-DAAP--EKPEKWQDVMQDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIAC--IGFTW---I 106 (475)
T ss_dssp TTCSGGGSC-SSCC--SSCCCHHHHHHHHHHHTGGGCCCTTCTTBCCSSCCCCCHHHHHHHHHHHHHCC--CSSSC---C
T ss_pred HHHHHHhcC-CCCC--CCCCCHHHHHHHHHHHHhccCCCCCCcCceeeCCCCCcHHHHHHHHHHHHhCc--cccCc---c
Confidence 444543323 2567 67899999999999876655332234456664211111 1 11222111111 11223 3
Q ss_pred hhhcHHHHHHHHHHHHHHHhCCCcc----------ceecChHHHHHHHHHHHHHHHHHh----cCC-------CCCCEEE
Q 001990 626 QAQGYQEMFNNLGEWLCTITGFDSF----------SLQPNAGAAGEYAGLMVIRAYHKA----RGD-------HHRNVCI 684 (985)
Q Consensus 626 ~~~G~~~~~~el~~~la~l~G~~~~----------~~~~~sGa~g~~a~l~air~~~~~----~g~-------~~~~~Vl 684 (985)
.+++..++..++.+|+++++|.+.. .+++++|+++++.+++++|..... .|. .++++|+
T Consensus 107 ~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi 186 (475)
T 3k40_A 107 ASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGY 186 (475)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEE
T ss_pred CCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEE
Confidence 4678889999999999999999852 467788888887777777654311 111 1245788
Q ss_pred EcCCCCCCcHHHHHhcCcEEEEEeCCCCCCCCHHHHHHHHHhcC---CCeEEEEEEcCC-CccccccCHHHHHHHHHHcC
Q 001990 685 IPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANR---DNLSTLMVTYPS-THGVYEEGIDEICKIIHDNG 760 (985)
Q Consensus 685 v~~~~Hg~~~~~~~~~G~~v~~v~~~~~g~iDle~L~~~i~~~~---~~t~~Vvi~~pn-~~G~i~~di~eI~~la~~~g 760 (985)
++..+|.++.+.+...|++++.||++++| +|+++|+++|++.. ..+.+|+++.++ .+|.++ |+++|+++|+++|
T Consensus 187 ~s~~~H~s~~~~~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~-~l~~I~~la~~~~ 264 (475)
T 3k40_A 187 CSDQAHSSVERAGLLGGVKLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFD-YLDECGPVGNKHN 264 (475)
T ss_dssp EETTSCHHHHHHHHHHTCEEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC-CHHHHHHHHHHTT
T ss_pred ECCCchHHHHHHHHHcCCceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcC-CHHHHHHHHHHhC
Confidence 99999988888888999999999999889 99999999997421 126778888875 589998 8999999999999
Q ss_pred CEEEEEccccccccCCC--C---CCcCCCcEEEeCCcccccccCCCCCCcceeeeeccc-cc-CcC---CCCccccCCCC
Q 001990 761 GQVYMDGANMNAQVGLT--S---PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LA-PFL---PSHPVVSTGGI 830 (985)
Q Consensus 761 ~lliVD~a~~~~~~g~~--~---~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~-l~-~~l---pg~~~g~~~~~ 830 (985)
+++|||+|+..+..... . .+...+|++++++||||+.|+ |+|++++++. +. +.+ +..+......
T Consensus 265 ~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~-----g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~- 338 (475)
T 3k40_A 265 LWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNF-----DCSAMWLKDPSWVVNAFNVDPLYLKHDMQG- 338 (475)
T ss_dssp CEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS-----SCEEEEESSGGGC------------------
T ss_pred CeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCC-----ceEEEEEeCHHHHHHHhcCCccccCCCcCC-
Confidence 99999999864321110 0 111246999999999997553 4567777753 32 221 1111100000
Q ss_pred CCCCCCCCCCCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEEEEec
Q 001990 831 PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLR 910 (985)
Q Consensus 831 ~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~vv~~~ 910 (985)
.... .....+.. +....+...|+.+..+|.+|+.+..++..++++++++.|++...+....+ +..+.+++.+.
T Consensus 339 ~~~~--~~~~~~~~---sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~--~~~~iv~f~~~ 411 (475)
T 3k40_A 339 SAPD--YRHWQIPL---GRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAE--INMGLVCFRLK 411 (475)
T ss_dssp ------------CC---CGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSC--CBTTEEEEEES
T ss_pred CCCC--cccccccC---CCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC--CceEEEEEEeC
Confidence 0000 00001111 11223456788899999999999999999999999999987323322222 22334566654
Q ss_pred CccccCCCCHHHHHHHHHHCCCccCC-CCCCCCCEEEEeccC-CCCHHhhchHHHHHHHHHHHHHHHH
Q 001990 911 GLKNTAGIEPEDVAKRLMDYGFHGPT-MSWPVPGTLMIEPTE-SESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 911 ~~~~~~g~~~~~l~~~L~e~Gi~~~~-~~~pv~~~lris~t~-~~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
. .+....++.++|.++|+.... ..+.-...+|++++. .+|++||| +++++|+++.+++.
T Consensus 412 ~----~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~---~~~~~i~~~~~~~~ 472 (475)
T 3k40_A 412 G----SNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDME---YSWKEVSAAADEME 472 (475)
T ss_dssp S----CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHH---HHHHHHHHHHHHHH
T ss_pred C----chHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHH---HHHHHHHHHHHHHh
Confidence 1 112356889999998875421 111113579999874 46899999 99999999887764
No 17
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.93 E-value=1.6e-23 Score=245.61 Aligned_cols=347 Identities=12% Similarity=0.074 Sum_probs=241.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCc-c---ceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHH
Q 001990 139 MKFSKFDEGLTESQMIEHMQKLASMNKV-Y---KSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLL 214 (985)
Q Consensus 139 ~~lp~~~~~~se~e~~~~~~~~~~~n~~-~---~~~lG~g~~~~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~ 214 (985)
++|| .+++++.++++++.++..++.. . ..|.+ ++.++.+.+.+.+. +. -++++++.+++..+...
T Consensus 16 ~~lp--~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~-----~~~~~~v~e~~~~a---~~-~~~~~~~~~~~~~~l~~ 84 (452)
T 2dgk_A 16 KRFP--LHEMRDDVAFQIINDELYLDGNARQNLATFCQ-----TWDDENVHKLMDLS---IN-KNWIDKEEYPQSAAIDL 84 (452)
T ss_dssp CSCC--CSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSC-----CCCCHHHHHHHHHT---TT-CBTTCTTTCHHHHHHHH
T ss_pred CCCC--CCCCCHHHHHHHHHHHhcCCCCCccCCCCeeC-----CCchHHHHHHHHHH---hc-cCCCChhhChhHHHHHH
Confidence 4676 5899999999999999865533 1 23333 33444554444431 11 13455666789999999
Q ss_pred HHHHHHHHhhCCCCcc-----eeeccchHHHHHHHHHHhhhh-------cC---CCCEEEEcCCCChhHHHHHHHhhcCC
Q 001990 215 NFQTMIADLTGLPMSN-----ASLLDEGTAAAEAMAMCNNIQ-------KG---KKKTFIIASNCHPQTIDICITRADGF 279 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~-----~sl~~~~ta~~ea~~~a~~~~-------~~---~g~~Vlv~~~~h~s~~~~~~~~a~~~ 279 (985)
++++++|+++|++..+ +.+++|||.++..++++++.. .+ .+++||+++ .|+++...++ ..
T Consensus 85 ~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~----~~ 159 (452)
T 2dgk_A 85 RCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFAR----YW 159 (452)
T ss_dssp HHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHH----HT
T ss_pred HHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHH----Hc
Confidence 9999999999998765 889999998777666654320 11 136999999 9999988864 35
Q ss_pred CeEEEEeCch---------hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhC------CcEEEEEeccccccC--
Q 001990 280 DIKVVVSDLK---------DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHAN------GVKVVMATDLLALTI-- 340 (985)
Q Consensus 280 gi~v~~~~~~---------~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~------galliV~a~~~alg~-- 340 (985)
|++++.++.+ +|++ ++++|++|++++| |++|.+.|+++|+++||++ |++++||+ ..+.+.
T Consensus 160 G~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~-a~~~~~~~ 238 (452)
T 2dgk_A 160 DVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDA-ASGGFLAP 238 (452)
T ss_dssp TCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEEC-TTGGGTHH
T ss_pred CceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEc-ccHHHHHH
Confidence 8899888653 4555 7889999999998 6899999999999999995 99999953 223221
Q ss_pred -CCCC-----CcccceEEEecCccccccCCCCCCceEEEEEchh-hH-hcCC---CceeeeeecCCCCcceEEecccccc
Q 001990 341 -LKPP-----GELGADIVVGSAQRFGVPMGYGGPHAAFLATSQE-YK-RMMP---GRIVGVSIDSSGKPALRVAMQTREQ 409 (985)
Q Consensus 341 -l~~p-----~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~-~~-~~lp---~~~vG~s~d~~g~~~~~l~l~tre~ 409 (985)
+..+ ...|+|++++++++++ ++|+++|+++++++ ++ +.+. +.+ | +.. ..+.+
T Consensus 239 ~~~~~~~~~~~~~~~d~~~~~~hK~~----~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~------~~~-~~~~~----- 301 (452)
T 2dgk_A 239 FVAPDIVWDFRLPRVKSISASGHKFG----LAPLGCGWVIWRDEEALPQELVFNVDYL-G------GQI-GTFAI----- 301 (452)
T ss_dssp HHCTTCCCSTTSTTEEEEEEETTTTT----CCCSSCEEEEESSGGGSCGGGCEEECCT-T------CCE-EECCS-----
T ss_pred hhCccchhhcCCCCCcEEEECccccc----CCCCCeEEEEEcCHHHHHHHhccCcccc-C------CCC-CCccc-----
Confidence 1111 1348999999995554 35567899999754 33 3331 111 0 000 00000
Q ss_pred cccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCC----CCcceEEEecCC-
Q 001990 410 HIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL----PFFDTVKVKCAD- 484 (985)
Q Consensus 410 ~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~----~~~~~~~i~~~~- 484 (985)
.++.+. ....++.+++ ..+|.+|++++.+++.++++++++.|+++++++++.+ +.++.++|..++
T Consensus 302 -----~~~r~~---~~~~~~~aal--~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~~~ 371 (452)
T 2dgk_A 302 -----NFSRPA---GQVIAQYYEF--LRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDG 371 (452)
T ss_dssp -----CCSCBC---HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEECTT
T ss_pred -----CCCChh---HHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEecCc
Confidence 111111 1233333443 5668899999999999999999999999966988742 455667776543
Q ss_pred ------HHHHHHHHHHcCceeeee--c-----CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 485 ------AHAIASAAYKIEMNLRVV--D-----SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 ------~~~l~~~L~~~Gi~~~~~--~-----~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
..++.++|.++||.++.. . .+.+|+|++..+|++|+|+|+++|+.
T Consensus 372 ~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~ 429 (452)
T 2dgk_A 372 EDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKA 429 (452)
T ss_dssp CCCSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHH
Confidence 389999999999976432 1 24799999999999999999999974
No 18
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.93 E-value=2.7e-23 Score=246.79 Aligned_cols=380 Identities=12% Similarity=0.066 Sum_probs=253.5
Q ss_pred CCccccccCCHHHHHHHHHHHhcCccCcCcccccccc-eecccCcc-ccccccccccccccCCCCcchhhhcHHHHHHHH
Q 001990 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGS-CTMKLNAT-TEMMPVTWPSFANIHPFAPADQAQGYQEMFNNL 637 (985)
Q Consensus 560 ~~pv~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lGs-~~~~~~~~-~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~el 637 (985)
.+| ..+.+..++++.+++....+- +..+++.+ +++...+. .+... +..+-+...+ +.+++..++..++
T Consensus 31 ~~p--~~~~~~~~~~~~~~~~i~l~g---np~~~l~s~~t~~~~~~v~~~l~----~~~~~~~~~~-~~~p~~~~le~~~ 100 (502)
T 3hbx_A 31 KMP--ENSIPKEAAYQIINDELMLDG---NPRLNLASFVTTWMEPECDKLIM----SSINKNYVDM-DEYPVTTELQNRC 100 (502)
T ss_dssp SCC--SSCCCHHHHHHHHHHHGGGSC---CGGGBTTCCSCCCCCHHHHHHHH----HTTTCBTTCT-TTCHHHHHHHHHH
T ss_pred CCC--CCCCCHHHHHHHHHHHhccCC---CCCceeccccCCCCCHHHHHHHH----HHhccCCCCh-hcChhHHHHHHHH
Confidence 456 468899999999987654431 12233443 33332221 11111 1111111111 2356788888899
Q ss_pred HHHHHHHhCCC--cc----ceecChHHHHHHHHHHHHHH-HHHh---cCCC-CCCEEEEcCCCCCCcHHHHHhcCcEEEE
Q 001990 638 GEWLCTITGFD--SF----SLQPNAGAAGEYAGLMVIRA-YHKA---RGDH-HRNVCIIPVSAHGTNPATAAMCGMKIVS 706 (985)
Q Consensus 638 ~~~la~l~G~~--~~----~~~~~sGa~g~~a~l~air~-~~~~---~g~~-~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~ 706 (985)
++++++++|++ .. .+++++|++++..++++++. +... .|.. .+++||++...|.++...++..|++++.
T Consensus 101 ~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~ 180 (502)
T 3hbx_A 101 VNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKE 180 (502)
T ss_dssp HHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEE
Confidence 99999999998 21 23467788777555555442 2111 1321 2348999999898888888899999999
Q ss_pred EeCCCC-CCCCHHHHHHHHHhcCCCeEEEEEEcCC-CccccccCHHHHHHHHHHc------CCEEEEEccccccccCC-C
Q 001990 707 VGTDAK-GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDN------GGQVYMDGANMNAQVGL-T 777 (985)
Q Consensus 707 v~~~~~-g~iDle~L~~~i~~~~~~t~~Vvi~~pn-~~G~i~~di~eI~~la~~~------g~lliVD~a~~~~~~g~-~ 777 (985)
+|++++ +.+|+++|+++|+ +++++|++++|+ ++|.++ |+++|+++|+++ |+++|||+|+..+..++ .
T Consensus 181 v~~~~~~~~~d~~~l~~~i~---~~t~~v~~~~~~n~tG~~~-~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~ 256 (502)
T 3hbx_A 181 VKLSEGYYVMDPQQAVDMVD---ENTICVAAILGSTLNGEFE-DVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLY 256 (502)
T ss_dssp ECCBTTBCSCCHHHHHHHCC---TTEEEEEEEBSCTTTCCBC-CHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHC
T ss_pred EecCCCcCcCCHHHHHHHHh---hCCEEEEEecCCCCCCccc-CHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhC
Confidence 999876 8999999999997 789999999985 699998 899999999999 99999999986322110 1
Q ss_pred -----CCCcCCCcEEEeCCcccccccCCCCCCcceeeeecc-ccc-CcCC--CCccccCCCCCCCCCCCCCCCcccccch
Q 001990 778 -----SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLA-PFLP--SHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 778 -----~~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~-~l~-~~lp--g~~~g~~~~~~~~~~~~~t~~i~s~~~g 848 (985)
.....++|++++++||++. +++|+|++++++ .+. ..+. ....+.. .....+..+..+
T Consensus 257 ~~~~~~~~~~~~D~v~~s~hK~l~-----~p~g~G~~~~~~~~~l~~~~~~~~~yl~~~---------~~~~~~~~sr~~ 322 (502)
T 3hbx_A 257 PELEWDFRLPLVKSINVSGHKYGL-----VYAGIGWVIWRNKEDLPEELIFHINYLGAD---------QPTFTLNFSKGS 322 (502)
T ss_dssp TTCCCSTTSTTEEEEEEETTTTTC-----CCSSCEEEEESSGGGSCGGGCEEECSSSSC---------EEECCSCCSCBS
T ss_pred cccccccCCCCceEEEECcccccC-----CCCCeEEEEEeCHHHhhHHhccCcccccCC---------CCCccccCCchH
Confidence 1123479999999999974 345778888764 333 1111 0011100 000001111111
Q ss_pred hhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc--CCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHH
Q 001990 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH--YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 849 ~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~--~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~ 926 (985)
..+.+.|+.+..+|.+|+.+..++..+++++|++.|++. +++...+ +..+.+.+.+.. ..+.+..++.++
T Consensus 323 --~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~---~~~~~v~f~~~~---~~~~~~~~l~~~ 394 (502)
T 3hbx_A 323 --SQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKD---EGVPLVAFSLKD---SSCHTEFEISDM 394 (502)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCS---SSSSEEEEEESS---CSSCCHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCC---CCceEEEEEecC---CCcCCHHHHHHH
Confidence 134556788888999999999999999999999999873 4443211 223456666641 113567799999
Q ss_pred HHHCCCccCCCCCCC----CCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHHHc
Q 001990 927 LMDYGFHGPTMSWPV----PGTLMIEPTESESKVCHNREDLFFQILLSLTKFTTFA 978 (985)
Q Consensus 927 L~e~Gi~~~~~~~pv----~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~~~ 978 (985)
|.++||.++....|. ...+||+++..+|++|+| +|+++|+++++++++.
T Consensus 395 L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid---~li~~L~~~l~~l~~~ 447 (502)
T 3hbx_A 395 LRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAE---RLVIDIEKVMRELDEL 447 (502)
T ss_dssp HHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHH---HHHHHHHHHHHHHHTC
T ss_pred HHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHH---HHHHHHHHHHHHHHhC
Confidence 999999986543331 257999999999999999 9999999999887653
No 19
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.92 E-value=9.4e-24 Score=247.82 Aligned_cols=358 Identities=14% Similarity=0.097 Sum_probs=233.2
Q ss_pred CCccccccCCHHHHHHHHHHHhcCccCcCcccccccc-eecccCcc--ccccc---------c-ccccccccCCCCcchh
Q 001990 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGS-CTMKLNAT--TEMMP---------V-TWPSFANIHPFAPADQ 626 (985)
Q Consensus 560 ~~pv~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lGs-~~~~~~~~--~~~~~---------~-~~~~f~~~~p~~p~e~ 626 (985)
.+| .+|+++.++.+.++++...+. .++|.. ++.+.+.. ..+.. . ...+|.+.+| .. ..
T Consensus 57 ~lp--~~g~~~~~i~~~~~~~~~~~~-----~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~ 127 (456)
T 2z67_A 57 KIP--ENGIDDEKIKLFLKFLSMMDT-----DKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQP-KA-SG 127 (456)
T ss_dssp SCC--SSCCCHHHHHHHHHHHHTTBG-----GGCTTCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCT-TB-HH
T ss_pred CCC--CCCCCHHHHHHHHHHHHhccc-----cccccccccccccccccccccCccccccCCCccHHHHHHhhCc-cc-cc
Confidence 345 478899999999888876542 133431 22222211 11110 0 1122322333 11 33
Q ss_pred hhcHHHHHHHHHHHHHHHhCCCccceecChHH-HHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEE
Q 001990 627 AQGYQEMFNNLGEWLCTITGFDSFSLQPNAGA-AGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 627 ~~G~~~~~~el~~~la~l~G~~~~~~~~~sGa-~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~ 705 (985)
+++..++.+++++++++++|++...+++++|+ .++.+++++++.+. ++++||+++..|.++...++..|++++
T Consensus 128 ~~~~~~~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~------~~~~vi~~~~~h~s~~~~~~~~G~~~~ 201 (456)
T 2z67_A 128 ASIMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKY------GSNVVIYPYASHKSPIKAVSFVGMNMR 201 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHH------CCCEEEEECCCCHHHHHHHHHTTCEEE
T ss_pred CcHHHHHHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhc------CCCEEEEECCCcHHHHHHHHHcCCCce
Confidence 44678888999999999999986434445555 34444444444321 346788888888887777888999999
Q ss_pred EEeC---CCCCCCCHHHHHHHH-Hhc-CCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC--
Q 001990 706 SVGT---DAKGNINIEELRKAA-EAN-RDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-- 777 (985)
Q Consensus 706 ~v~~---~~~g~iDle~L~~~i-~~~-~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~-- 777 (985)
.++. ++++.+|+++|+++| +.. ++++.+|++++| |++|.++ |+++|+++|+++|+++|||+|+.....+..
T Consensus 202 ~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~-~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~ 280 (456)
T 2z67_A 202 LVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSD-DIVEIAKICENYDIPHIINGAYAIQNNYYLEK 280 (456)
T ss_dssp EECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCC-CHHHHHHHHHHHTCCEEEECTTTTTCHHHHHH
T ss_pred EEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcC-CHHHHHHHHHHcCCcEEEECcchHHHHHhhHH
Confidence 9987 667899999999999 421 247888888999 5699998 899999999999999999987642221111
Q ss_pred CCCcC--CCcEEEeCCcccccccCCCCCCcceeeeec-ccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHH
Q 001990 778 SPGYI--GADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 778 ~~g~~--g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~-~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~ 854 (985)
....+ ++|++++|+||+++ +++|+|+++++ +++.+.+.....|+ . .. .. +.
T Consensus 281 ~~~~~~~~~D~~~~s~hK~~~-----~p~g~G~l~~~~~~~~~~l~~~~~g~-------------~--~~----~~--~~ 334 (456)
T 2z67_A 281 LKKAFKYRVDAVVSSSDKNLL-----TPIGGGLVYSTDAEFIKEISLSYPGR-------------A--SA----TP--VV 334 (456)
T ss_dssp HHHHHTSCCSEEEEEHHHHHC-----CCSSCEEEEESCHHHHHHHHTTSCSC-------------B--CS----HH--HH
T ss_pred HHHhhCCCCCEEEEcCCCCcC-----CCCCeEEEEEcCHHHHhhcCcCCCCC-------------C--CC----CH--HH
Confidence 00112 79999999999874 34578999995 55554432211110 0 01 11 23
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhccC---CeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001990 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHY---PILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 855 ~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~~---~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~G 931 (985)
..|+.+..++.+|+.+..++..++++++.++|++.. ++...++. +.+.+++.. .+. ..++.++|.++|
T Consensus 335 ~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~~----~~v~~~~~~----~~~-~~~l~~~L~~~g 405 (456)
T 2z67_A 335 NTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE----SPIASCISV----NSD-PVEIAAKLYNLR 405 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC----CSSEEEEEC----SSC-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCCC----CeEEEEEec----ccH-HHHHHHHHHHcC
Confidence 456777788889999888999999999999997631 22222222 223344410 012 568999999998
Q ss_pred Cc---cC-------CC---CCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHH
Q 001990 932 FH---GP-------TM---SWPVPGTLMIEPTESESKVCHNREDLFFQILLSLT 972 (985)
Q Consensus 932 i~---~~-------~~---~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~ 972 (985)
+. +. .. ..| .+.+|+|++..+|++||| +|+++|++++
T Consensus 406 i~~~rv~~~~g~f~G~~~~~~~-~~~vr~s~~~~~t~eeid---~~l~~L~~~~ 455 (456)
T 2z67_A 406 VTGPRGIKKTDHFGNCYLGTYT-HDYIVMNAAIGVRTEDIV---NSVSKLEKIL 455 (456)
T ss_dssp EESCEEECTTCHHHHTCSSCCS-CCEEEEECCTTCCHHHHH---HHHHHHHTC-
T ss_pred CCcceEEeecCccccccccccC-cchhhhhhhcCCCHHHHH---HHHHHHHHHh
Confidence 62 21 00 112 378999999999999999 9999998653
No 20
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.91 E-value=1.5e-22 Score=240.23 Aligned_cols=382 Identities=14% Similarity=0.146 Sum_probs=242.7
Q ss_pred cccCCHHHHHHHHHHHhcCccCcCcccccccceec-ccCcc--ccccccccccccccCCCCcchhhhcHHHHHHHHHHHH
Q 001990 565 NKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTM-KLNAT--TEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWL 641 (985)
Q Consensus 565 ~~~~se~e~~~~l~~l~~~~~~~~~~~~~lGs~~~-~~~~~--~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~el~~~l 641 (985)
+.+.+.+++++.+.+..-.+.....+..+||+... ...+. .++..... ..+.+.| +.+++..++..++++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~v~~~~~~~~~--n~~~~~~---~~~~~~~~le~~~~~~l 149 (497)
T 2qma_A 75 NKNAPLKSVIDDVAELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAAL--NQSMDSW---DQASSATYVEQKVVNWL 149 (497)
T ss_dssp SCCCCHHHHHHHHHHHTTTTSCCTTSTTBCSSSCCCCBHHHHHHHHHHHHH--CCCTTCG---GGCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeCCCCCcHHHHHHHHHHHhh--cccccch---hhChHHHHHHHHHHHHH
Confidence 46778899999988755444332345567775222 11111 11111111 0111222 33567778888889999
Q ss_pred HHHhCCCc--cceecChHHHHHHHHHHHHHHHHH---------hcCCCC--CC-EEEEcCCCCCCcHHHHHhcCc---EE
Q 001990 642 CTITGFDS--FSLQPNAGAAGEYAGLMVIRAYHK---------ARGDHH--RN-VCIIPVSAHGTNPATAAMCGM---KI 704 (985)
Q Consensus 642 a~l~G~~~--~~~~~~sGa~g~~a~l~air~~~~---------~~g~~~--~~-~Vlv~~~~Hg~~~~~~~~~G~---~v 704 (985)
++++|.+. ..+++++|++++..++.++|.+.. ..|... ++ +|+++...|.++...+...|. ++
T Consensus 150 a~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v 229 (497)
T 2qma_A 150 CDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAV 229 (497)
T ss_dssp HHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGE
T ss_pred HHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccE
Confidence 99999864 346778888888777777665322 123211 34 788999899888888887776 89
Q ss_pred EEEeCCCCCCCCHHHHHHHHHhcC-CC--eEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-C-
Q 001990 705 VSVGTDAKGNINIEELRKAAEANR-DN--LSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-S- 778 (985)
Q Consensus 705 ~~v~~~~~g~iDle~L~~~i~~~~-~~--t~~Vvi~~pn-~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~-~- 778 (985)
+.+|+++++.+|+++|+++|++.. .. +.+|++++++ .+|.++ |+++|+++|+++|+|+|||+++..+..... .
T Consensus 230 ~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~-~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~ 308 (497)
T 2qma_A 230 MTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAID-DLDFIADMAVKHDMWMHVDGAYGGALILSSHKS 308 (497)
T ss_dssp EEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBC-CHHHHHHHHHHHTCEEEEEETTGGGGGGSTTGG
T ss_pred EEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCC-CHHHHHHHHHHcCCEEEEehhhhHHHHhCcchH
Confidence 999998889999999999997421 12 4478888874 689998 899999999999999999999864432211 0
Q ss_pred --CCcCCCcEEEeCCcccccccCCCCCCcceeeeeccc-ccCcCCC--CccccCCCCCCCCCCCCCCCccc-c-cchhhh
Q 001990 779 --PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPFLPS--HPVVSTGGIPAPEKSQPLGTIAA-A-PWGSAL 851 (985)
Q Consensus 779 --~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~-l~~~lpg--~~~g~~~~~~~~~~~~~t~~i~s-~-~~g~~~ 851 (985)
.+-.++|++++++||||+.| .++|+++++++ ..+.+.. ..+....+ ..++... + ..+...
T Consensus 309 ~~~gi~~~D~i~~s~hK~l~~p-----~~~G~l~~~~~~~~~~~~~~~~yl~~~~~--------~~~~~~~~~~~~~r~~ 375 (497)
T 2qma_A 309 RLKGVERAHSISVDFHKLFYQT-----ISCGALLVNDKSNFKFLLHHADYLNREHD--------ELPNLVDKSIATTKRF 375 (497)
T ss_dssp GGTTGGGCSEEEEETTTTTCCC-----SSCEEEEESCGGGGGGGCC----------------------------CCSCCC
T ss_pred hhcCcccCCEEEEcchhccCCC-----cceEEEEEeCHHHHHHhcCCchhcCCccc--------cCCCccccCCCCCCch
Confidence 11126899999999998644 35788888754 2332211 00000000 0001000 0 000011
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEEEEecCccccCCCC----HHHHHHHH
Q 001990 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIE----PEDVAKRL 927 (985)
Q Consensus 852 ~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~----~~~l~~~L 927 (985)
.+...|+.+..+|.+|+.+..++..++++++.+.|++...+...++ +..+.+.+.+.+ .+.+ ..++.+.|
T Consensus 376 ~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~--~~~~~v~f~~~~----~~~~~~~l~~~l~~~l 449 (497)
T 2qma_A 376 DALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAE--PSLSTVLFRATH----ETADLDELNKALRLEA 449 (497)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSC--CSSSEEEEEECC----SSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcC--CCceEEEEEEcC----CccCHHHHHHHHHHHH
Confidence 2334678888899999999999999999999999987323322121 122345555531 1112 24577788
Q ss_pred HHCCCccCCCC-CCCCCEEEEec-cCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 928 MDYGFHGPTMS-WPVPGTLMIEP-TESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 928 ~e~Gi~~~~~~-~pv~~~lris~-t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
.++|+.+.... +...+.+|+++ +..+|++||+ +++++|+++.++
T Consensus 450 ~~~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~---~~~~~l~~~~~~ 495 (497)
T 2qma_A 450 LTRGIAVLGETIVDGKTALKFTILNPCLTTSDFE---SLLSKINMLAVE 495 (497)
T ss_dssp HHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHH---HHHHHHHHHHHH
T ss_pred HhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHH---HHHHHHHHHHHh
Confidence 88998874211 11135799998 8899999999 999999988765
No 21
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.91 E-value=6.4e-23 Score=233.80 Aligned_cols=315 Identities=10% Similarity=0.046 Sum_probs=216.6
Q ss_pred HHHHHHHHHHHHHHHhCCCc--cc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCc--HHHHHhcCcEE
Q 001990 630 YQEMFNNLGEWLCTITGFDS--FS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN--PATAAMCGMKI 704 (985)
Q Consensus 630 ~~~~~~el~~~la~l~G~~~--~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~--~~~~~~~G~~v 704 (985)
..+...++++++++++|.+. .. +++++|++++. ++.++ ..++++||+++..|... ...++..|+++
T Consensus 33 ~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~--------~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~ 103 (384)
T 3zrp_A 33 FVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSL--------LKPNDKILVVSNGVFGDRWEQIFKRYPVNV 103 (384)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGG--------CCTTCEEEEECSSHHHHHHHHHHTTSSCEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhh--------cCCCCEEEEecCCcchHHHHHHHHHcCCcE
Confidence 45678899999999999986 43 56677776664 33322 14678999987655332 22345789999
Q ss_pred EEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCC
Q 001990 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 705 ~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g 783 (985)
+.+|++.++.+|+++|++++++ .++++|++++| |++|.+. |+++|.++|+++|+++|+|++|..+...+ ....++
T Consensus 104 ~~v~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~~~~~~-~~~~~~ 179 (384)
T 3zrp_A 104 KVLRPSPGDYVKPGEVEEEVRK--SEYKLVALTHVETSTGVRE-PVKDVINKIRKYVELIVVDGVSSVGAEEV-KAEEWN 179 (384)
T ss_dssp EEECCSTTCCCCHHHHHHHHHH--SCEEEEEEESEETTTTEEC-CHHHHHHHHGGGEEEEEEECTTTTTTSCC-CTTTTT
T ss_pred EEecCCCCCCCCHHHHHHHHHh--CCCcEEEEeCCCCCCceEC-cHHHHHHHHHhcCCEEEEECcccccCccc-cccccC
Confidence 9999988899999999999983 27999999988 6799998 89999999999999999999986443222 234568
Q ss_pred CcEEEeCCcccccccCCCCCCcceeeeecccccCcC-CC-CccccCCCC--C-----C----CCCCCCCCCcccccchhh
Q 001990 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFL-PS-HPVVSTGGI--P-----A----PEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 784 ~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~l-pg-~~~g~~~~~--~-----~----~~~~~~t~~i~s~~~g~~ 850 (985)
+|++++++||+|+ |++|+|++++++++.+.+ .. ...++..+. . . .....++.+ .
T Consensus 180 ~d~~~~s~~K~~~-----~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~ 246 (384)
T 3zrp_A 180 VDVYLTASQKALG-----SAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPP--------V 246 (384)
T ss_dssp CSEEEEETTSTTC-----CCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCC--------H
T ss_pred CCEEEecCccccc-----CCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCC--------H
Confidence 9999999999984 446789999998775544 11 000000000 0 0 000001111 1
Q ss_pred hHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHH
Q 001990 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 851 ~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e 929 (985)
..+.+..+.+..+...++.+..++..++++++.+.|++ ++.+..+.......+.+.+.++ +.+..++.+.|.+
T Consensus 247 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~ 320 (384)
T 3zrp_A 247 HVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLEIVARRPESYSNTVTGVILK------VADPQKVLAGTVN 320 (384)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSCSSGGGBCSSEEEEECS------SSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCeEccCcccccCccEEEEECC------CCCHHHHHHHHHH
Confidence 12222334555555667778888888999999999987 4444321100011223345554 3578899999999
Q ss_pred CCCccCCCC-CCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHHHccC
Q 001990 930 YGFHGPTMS-WPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTTFAGR 980 (985)
Q Consensus 930 ~Gi~~~~~~-~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~~~~~ 980 (985)
+||.+.... .+. +.+|++++..+|++|++ +++++|+++++++....+
T Consensus 321 ~gi~v~~g~~~~~-~~iRi~~~~~~~~e~i~---~~~~~l~~~l~~~~~~~~ 368 (384)
T 3zrp_A 321 EGVEFAPGVHPAF-KYFRIGHMGWVTPNDAI---IAISVIERTLRKLGEPIR 368 (384)
T ss_dssp TTCCCEECCCTTC-CEEEEECCSSCCHHHHH---HHHHHHHHHHHHHTCCCC
T ss_pred CCEEEecCCCCCc-CEEEEeccccCCHHHHH---HHHHHHHHHHHHcCCCcC
Confidence 999875322 232 78999999999999999 999999999987764333
No 22
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.91 E-value=2.5e-22 Score=229.19 Aligned_cols=318 Identities=14% Similarity=0.116 Sum_probs=219.0
Q ss_pred HHHHHHHHHHHHHHHhCCC-cc-ceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCC--cHHHHHhcCcEEE
Q 001990 630 YQEMFNNLGEWLCTITGFD-SF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGT--NPATAAMCGMKIV 705 (985)
Q Consensus 630 ~~~~~~el~~~la~l~G~~-~~-~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~--~~~~~~~~G~~v~ 705 (985)
..+...++++++++++|.+ .. .+++++|++++..++.++. .++++|++++..|.. +...++..|++++
T Consensus 51 ~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~ 122 (386)
T 2dr1_A 51 YRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGV--------SKGGKVLVTIIGAFGKRYKEVVESNGRKAV 122 (386)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHS--------CTTCEEEEEESSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhh--------cCCCeEEEEcCCchhHHHHHHHHHhCCceE
Confidence 3567889999999999997 33 4566777777654444331 367899998886655 4455678899999
Q ss_pred EEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCCC
Q 001990 706 SVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGA 784 (985)
Q Consensus 706 ~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g~ 784 (985)
.++.+.++.+|+++|++++++. +++++|++++| |++|.+. |+++|+++|+++|+++|+|++|..+...+ ....+++
T Consensus 123 ~v~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~~~~~~-~~~~~~~ 199 (386)
T 2dr1_A 123 VLEYEPGKAVKPEDLDDALRKN-PDVEAVTITYNETSTGVLN-PLPELAKVAKEHDKLVFVDAVSAMGGADI-KFDKWGL 199 (386)
T ss_dssp EEECCTTCCCCHHHHHHHHHHC-TTCCEEEEESEETTTTEEC-CHHHHHHHHHHTTCEEEEECTTTBTTBCC-CTTTTTC
T ss_pred EEecCCCCCCCHHHHHHHHhcC-CCCcEEEEEeecCCcchhC-CHHHHHHHHHHcCCeEEEEccccccCccc-cccccCC
Confidence 9999888889999999999632 57899999987 6799998 89999999999999999999986543322 3445688
Q ss_pred cEEEeCCcccccccCCCCCCcceeeeecccccCcCCC-CccccCCCCCC--CCCC-CCCCCcccccchhhhHHHHHHHHH
Q 001990 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS-HPVVSTGGIPA--PEKS-QPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 785 Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg-~~~g~~~~~~~--~~~~-~~t~~i~s~~~g~~~~~~~A~a~l 860 (985)
|++++|+||+|+.| +|+|++++++++.+.+.. ...++..+... .... ......+. +.....++.+.+
T Consensus 200 di~~~s~sK~~~~~-----~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~l 270 (386)
T 2dr1_A 200 DVVFSSSQKAFGVP-----PGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTP----PMPQVFGINVAL 270 (386)
T ss_dssp SEEEEETTSTTCCC-----SSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCC----CHHHHHHHHHHH
T ss_pred cEEEEeccccccCC-----CceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCC----CHHHHHHHHHHH
Confidence 99999999999532 258999999876654421 10111000000 0000 00000011 122233344556
Q ss_pred HHhchh-hHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCC-ceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC
Q 001990 861 AMMGSK-GLTEASKIAILNANYMAKRLEK-HYPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 861 ~~lg~~-gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~-~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~ 937 (985)
..+... ++.+..++..++++++.+.|++ ++.+. .+.+ ...+.+.+.++ .+.+..++.+.|.++||.+...
T Consensus 271 ~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~gi~v~~~ 343 (386)
T 2dr1_A 271 RIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDIL--AEPGHESPTITAVLTP-----PGIKGDEVYEAMRKRGFELAKG 343 (386)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBS--SCTTCBCSSEEEEECC-----TTCCHHHHHHHHHHTTEECEEC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeC--cCccccCCceEEEEcC-----CCCCHHHHHHHHHHCCeEEecC
Confidence 655555 6777788888999999999987 44432 2211 11223445553 2467889999999999987533
Q ss_pred CCC-CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHHH
Q 001990 938 SWP-VPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTTF 977 (985)
Q Consensus 938 ~~p-v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~~ 977 (985)
..+ .++.+|++++..+|++|++ +++++|+++++++..
T Consensus 344 ~~~~~~~~iRi~~~~~~~~~~i~---~~~~~l~~~~~~~~~ 381 (386)
T 2dr1_A 344 YGSVKEKTFRIGHMGYMKFEDIQ---EMLDNLREVINELKK 381 (386)
T ss_dssp CGGGTTTEEEEECCSSCCHHHHH---HHHHHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCHHHHH---HHHHHHHHHHHHcCC
Confidence 222 2478999999999999999 999999999887643
No 23
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.91 E-value=4.2e-22 Score=226.46 Aligned_cols=313 Identities=12% Similarity=0.117 Sum_probs=214.7
Q ss_pred hcHHHHHHHHHHHHHHHhCCCcc-ceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHH---hcCcE
Q 001990 628 QGYQEMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA---MCGMK 703 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~~~~-~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~---~~G~~ 703 (985)
.+..+.+.++++++++++|.+.. .+++++|++++..++.++..+.. .++++||++...|+++...+. ..|++
T Consensus 39 ~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~~----~~gd~vi~~~~~~~~~~~~~~~~~~~g~~ 114 (382)
T 4hvk_A 39 FKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNA----RKGKHILVSAVEHMSVINPAKFLQKQGFE 114 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHHG----GGCCEEEEETTCCHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhhc----CCCCEEEECCCCcHHHHHHHHHHHhcCCE
Confidence 45567788999999999999864 35566777666555544431110 256899999987876655443 46999
Q ss_pred EEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcC
Q 001990 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~ 782 (985)
++.+|+++++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+++|+ +++|++|..+...+ ....+
T Consensus 115 ~~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~-li~D~a~~~~~~~~-~~~~~ 188 (382)
T 4hvk_A 115 VEYIPVGKYGEVDVSFIDQKLR---DDTILVSVQHANNEIGTIQ-PVEEISEVLAGKAA-LHIDATASVGQIEV-DVEKI 188 (382)
T ss_dssp EEEECBCTTSCBCHHHHHHHCC---TTEEEEECCSBCTTTCBBC-CHHHHHHHHSSSSE-EEEECTTTBTTBCC-CHHHH
T ss_pred EEEeccCCCCCcCHHHHHHHhc---cCceEEEEECCCCCceeeC-CHHHHHHHHHHcCE-EEEEhHHhcCCCCC-Cchhc
Confidence 9999999889999999999997 78999999998 5799998 89999999999999 99999986443222 22345
Q ss_pred CCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHH
Q 001990 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 783 g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~ 862 (985)
++|++++|+||++ |++|+|+++++++. .+.....++.. ......++.+. ..+.++.+.+..
T Consensus 189 ~~d~~~~s~~K~~------g~~g~g~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~--------~~~~~~~~al~~ 249 (382)
T 4hvk_A 189 GADMLTISSNDIY------GPKGVGALWIRKEA--KLQPVILGGGQ---ENGLRSGSENV--------PSIVGFGKAAEI 249 (382)
T ss_dssp TCSEEEEESGGGT------SCTTCEEEEEETTC--CCCCSSCSSCT---GGGTSCSCCCH--------HHHHHHHHHHHH
T ss_pred CCCEEEEeHHHhc------CCCceEEEEEcCcc--CcCcccccCCC---cCccccCCcCH--------HHHHHHHHHHHH
Confidence 7899999999975 34468889888654 22222211100 00011122111 111222233332
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCC-ceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-C-
Q 001990 863 MGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-W- 939 (985)
Q Consensus 863 lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~-~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~-~- 939 (985)
+ .+++.+..++..++++++.+.|++...+....+.. ...+.+.+.+. +.+..++.+.|.++||.+.... +
T Consensus 250 ~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~v~~g~~~~ 322 (382)
T 4hvk_A 250 T-AMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFS------YIEGESIVLSLDMAGIQASTGSACS 322 (382)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEET------TCCHHHHHHHHHHTTCBCBCC----
T ss_pred H-HhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEEC------CCCHHHHHHHHHHCCEEEeeCCccC
Confidence 2 35677778888899999999998632333322211 11123445543 4678899999999999875321 0
Q ss_pred -C------------C-----CCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHHHcc
Q 001990 940 -P------------V-----PGTLMIEPTESESKVCHNREDLFFQILLSLTKFTTFAG 979 (985)
Q Consensus 940 -p------------v-----~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~~~~ 979 (985)
+ . ++.+|++++..+|++|++ +++++|+++++++++..
T Consensus 323 ~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~---~~~~~l~~~~~~~~~~~ 377 (382)
T 4hvk_A 323 SKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVD---RLLEVLPGVIERLRSMS 377 (382)
T ss_dssp ----CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHH---HHHHHHHHHHHHHHHTC
T ss_pred CCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHH---HHHHHHHHHHHHHHhhc
Confidence 0 1 478999999999999999 99999999998877643
No 24
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.90 E-value=1.1e-22 Score=234.34 Aligned_cols=313 Identities=13% Similarity=0.110 Sum_probs=215.7
Q ss_pred HHHHHHHHHHHHHHHhCCCccc--eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCC--cHHHHHhcCcEEE
Q 001990 630 YQEMFNNLGEWLCTITGFDSFS--LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGT--NPATAAMCGMKIV 705 (985)
Q Consensus 630 ~~~~~~el~~~la~l~G~~~~~--~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~--~~~~~~~~G~~v~ 705 (985)
..+...++++++++++|.+... ++.++|++++..++.++. .++++||++...|.. +...++..|++++
T Consensus 44 ~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~ 115 (411)
T 3nnk_A 44 MTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAI--------RPGDKVLVPVFGRFGHLLCEIARRCRAEVH 115 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHC--------CTTCEEEEEECSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhc--------CCCCEEEEecCCchHHHHHHHHHHcCCeEE
Confidence 3456788999999999998643 555677776655444331 477899998876643 4445678899999
Q ss_pred EEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCCC
Q 001990 706 SVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGA 784 (985)
Q Consensus 706 ~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g~ 784 (985)
.+|.+.++.+|+++|++++++ +++++|++++| |++|.+. |+++|+++|+++|+++|+|++|..+...+ ....+++
T Consensus 116 ~v~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~Dea~~~~~~~~-~~~~~~~ 191 (411)
T 3nnk_A 116 TIEVPWGEVFTPDQVEDAVKR--IRPRLLLTVQGDTSTTMLQ-PLAELGEICRRYDALFYTDATASLGGNPL-ETDVWGL 191 (411)
T ss_dssp EEECCTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEEC-CCTTHHHHHHHHTCEEEEECTTTBTTBCC-CTTTTTC
T ss_pred EEecCCCCCCCHHHHHHHHhh--CCCeEEEEeCCCCCcceec-cHHHHHHHHHHcCCEEEEECCcccCCccc-chhccCC
Confidence 999988899999999999983 27889999997 6799998 89999999999999999999986443322 3345689
Q ss_pred cEEEeCCcccccccCCCCCCcceeeeecccccCcCCC------CccccC-----CCCC---------------CCCCCCC
Q 001990 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS------HPVVST-----GGIP---------------APEKSQP 838 (985)
Q Consensus 785 Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg------~~~g~~-----~~~~---------------~~~~~~~ 838 (985)
|++++++||+|+ |++|+|++++++++.+.+.. .+.|.. .... ......+
T Consensus 192 d~~~~s~~K~l~-----~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (411)
T 3nnk_A 192 DAVSAGMQKCLG-----GPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHH 266 (411)
T ss_dssp SEEECCSTTTTC-----CCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCS
T ss_pred cEEEecCccccC-----CCCceEEEEECHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCC
Confidence 999999999974 44578999999766533211 011100 0000 0000111
Q ss_pred CCCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCC
Q 001990 839 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAG 917 (985)
Q Consensus 839 t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g 917 (985)
+. +...+.++.+.+..+..+|+.+..++..++++++.+.|++ ++.+..+ ......+.+.+.++ .+
T Consensus 267 ~~--------~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~~~-----~~ 332 (411)
T 3nnk_A 267 TE--------ATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAMGLETFGD-LKHKMNNVLGVVIP-----QG 332 (411)
T ss_dssp CC--------CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBCSC-GGGBCSSEEEEECC-----TT
T ss_pred CC--------CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeCCC-cccccccEEEEECC-----CC
Confidence 11 1122233345566666667888888888999999999987 4444211 11111223445543 25
Q ss_pred CCHHHHHHHHHHC-CCccCCCCCC-CCCEEEEec-cCCCCHHhhchHHHHHHHHHHHHHHHH
Q 001990 918 IEPEDVAKRLMDY-GFHGPTMSWP-VPGTLMIEP-TESESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 918 ~~~~~l~~~L~e~-Gi~~~~~~~p-v~~~lris~-t~~~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
.+..++.+.|.++ ||.+.....+ .++.+|+++ +..+|++|++ +++++|+++++++.
T Consensus 333 ~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~---~~~~~l~~~l~~~~ 391 (411)
T 3nnk_A 333 INGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVM---TTLSALEAVLNYLK 391 (411)
T ss_dssp CCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHH---HHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHH---HHHHHHHHHHHHcC
Confidence 6788999999876 9987432111 247899998 7777999999 99999999987654
No 25
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.90 E-value=4.6e-23 Score=242.51 Aligned_cols=305 Identities=11% Similarity=0.073 Sum_probs=223.9
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEE-----EEe-
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKV-----VVS- 286 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v-----~~~- 286 (985)
..++++++|+++|+++.++.+++|+|.++..++.++....+++++||++...|+++..++...++..|+++ ...
T Consensus 113 ~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~ 192 (465)
T 3e9k_A 113 DESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKP 192 (465)
T ss_dssp THHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECC
T ss_pred HHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEec
Confidence 34567899999999988999999999988887766531112567899999999999888876666667653 232
Q ss_pred -------Cchhhhc-cC---CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCC-CCcccceEEE
Q 001990 287 -------DLKDIDY-KS---GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP-PGELGADIVV 353 (985)
Q Consensus 287 -------~~~~l~~-l~---~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~-p~~~GaDi~v 353 (985)
+++++++ ++ +++++|++.+| |++|.+.|+++|.++||++|+++++| ..++.|.+.. ..++|+|+++
T Consensus 193 ~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D-~a~~~g~~~~~~~~~~~D~~~ 271 (465)
T 3e9k_A 193 REGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFD-LAHAVGNVELYLHDWGVDFAC 271 (465)
T ss_dssp CTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEE-CTTTTTTSCCCHHHHTCCEEE
T ss_pred CCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEE-hhhhcCCcCCchhhcCCCEEE
Confidence 3356666 64 68999999997 67999999999999999999999995 3456665432 2468999999
Q ss_pred ecC-ccccccCCCCCCc-eEEEEEchhhHhcCCCceeeeeecCCCCcceEEe--cccccccccccccCCCccchhHHHHH
Q 001990 354 GSA-QRFGVPMGYGGPH-AAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVA--MQTREQHIRRDKATSNICTAQALLAN 429 (985)
Q Consensus 354 ~s~-k~lg~P~~~GGP~-~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~--l~tre~~~rre~atsni~t~~~l~a~ 429 (985)
+++ |.+. |||+ .|++++++++.+.+.+.+.||..... ...|.+. ........+++.||+|+ ....++
T Consensus 272 ~s~~K~l~-----~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~gt~~~---~~~~a~ 342 (465)
T 3e9k_A 272 WCSYKYLN-----AGAGGIAGAFIHEKHAHTIKPALVGWFGHEL-STRFKMDNKLQLIPGVCGFRISNPPI---LLVCSL 342 (465)
T ss_dssp ECSSSTTC-----CCTTCCCEEEECGGGTTTSCCSSCCGGGBCH-HHHTTCCSCCCBCSSGGGGCCSCCCH---HHHHHH
T ss_pred ECcccccc-----cCCCceEEEEEcHHHHhhcCCcccCccCCCC-CcccccCCCcCcCCChHHhccCCccH---HHHHHH
Confidence 998 7662 3454 68999999999888877777632100 0112111 11122334556788887 455555
Q ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcC----------CCEEEcCCC----CcceEEEecCC-HHHHHHHHHH
Q 001990 430 MAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----------GTVEVQGLP----FFDTVKVKCAD-AHAIASAAYK 494 (985)
Q Consensus 430 ~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----------g~~~~~~~~----~~~~~~i~~~~-~~~l~~~L~~ 494 (985)
.+++ .++...|++++.++..++++++.+.|+++ .|++++.+. ....+.|..+. ..++.++|.+
T Consensus 343 ~aal--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~~~~l~~~L~~ 420 (465)
T 3e9k_A 343 HASL--EIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVPNKDVFQELEK 420 (465)
T ss_dssp HHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECCTTCCHHHHHHT
T ss_pred HHHH--HHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecCCHHHHHHHHHH
Confidence 5665 44455689999999999999999999883 238887532 12345565554 6789999999
Q ss_pred cCceeeeecCCeEEEEe-ccCCCHHHHHHHHHHHhC
Q 001990 495 IEMNLRVVDSNTVTASF-DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 495 ~Gi~~~~~~~~~lris~-~~~~t~edid~ll~~l~~ 529 (985)
+||.++...++.+|+|+ +.++|++|+++++++|..
T Consensus 421 ~Gi~v~~~~~~~iRis~~~~~~t~edi~~~~~~l~~ 456 (465)
T 3e9k_A 421 RGVVCDKRNPNGIRVAPVPLYNSFHDVYKFTNLLTS 456 (465)
T ss_dssp TTEECEEETTTEEEEBCCTTTCCHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCEEEEeCcccCCCHHHHHHHHHHHHH
Confidence 99998765579999999 799999999999999974
No 26
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.90 E-value=4.2e-21 Score=219.40 Aligned_cols=314 Identities=17% Similarity=0.152 Sum_probs=224.9
Q ss_pred CCChhhHhhHHHHHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcC
Q 001990 199 TPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADG 278 (985)
Q Consensus 199 ~py~~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~ 278 (985)
+|+.........+.+.++++.+|+++|.+..++.+++|+|.++++++.++++. +||+|+++...|+++...+...++.
T Consensus 47 ~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~~ 124 (390)
T 1elu_A 47 GPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWH--QGDEILLTDCEHPGIIAIVQAIAAR 124 (390)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCC--TTCEEEEETTCCHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCCC--CCCEEEEecCcccHHHHHHHHHHHH
Confidence 44433333333466778999999999998888989999999988887776433 7899999999999998877655555
Q ss_pred CCeEEEEeCc----------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHH----hCCcEEEEEeccccccCCC
Q 001990 279 FDIKVVVSDL----------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAH----ANGVKVVMATDLLALTILK 342 (985)
Q Consensus 279 ~gi~v~~~~~----------~~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~----~~galliV~a~~~alg~l~ 342 (985)
.|.+++.++. +++++ +++++++|++.+| |.+|.+.|+++|.++|+ ++|+++++| +..+.|...
T Consensus 125 ~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~D-ea~~~g~~~ 203 (390)
T 1elu_A 125 FGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVD-GAQSAGSLP 203 (390)
T ss_dssp HCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEE-CTTTBTTBC
T ss_pred hCcEEEEEcCCCCCCccchHHHHHHhcCCCceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEE-cccccCCcC
Confidence 6888888765 24555 7788999999988 67999999999999999 999999995 344555432
Q ss_pred -CCCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeee-e-cCCCCcceEEecccccccccccccCC
Q 001990 343 -PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVS-I-DSSGKPALRVAMQTREQHIRRDKATS 418 (985)
Q Consensus 343 -~p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s-~-d~~g~~~~~l~l~tre~~~rre~ats 418 (985)
...++++|++++|. |++ +||+++|++++++++++.+.....|+. . +..+...|.+ .+...+...+|.
T Consensus 204 ~~~~~~~~d~~~~s~~K~~-----~~~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 274 (390)
T 1elu_A 204 LDFSRLEVDYYAFTGHKWF-----AGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGW----AEGGKRFEVATS 274 (390)
T ss_dssp CCTTTSCCSEEEEESSSTT-----CCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEE----CSGGGGGCCSCC
T ss_pred CChhhcCCCEEEccccccc-----cCCCceEEEEECHHhHhhcCCccccCCcccccccCccccc----ccchHhhCCCCC
Confidence 22467899999998 645 345678999999998888765544431 0 0001111222 111112234554
Q ss_pred CccchhHHHHHHHHHHHHHcCcch-HHHHHHHHHHHHHHHHHHHhcCCCEEEcCC--CCcceEEEecC-C--HHHHHHHH
Q 001990 419 NICTAQALLANMAAMYAVYHGPEG-LKTIAQRVHGLAGTFALGLKKLGTVEVQGL--PFFDTVKVKCA-D--AHAIASAA 492 (985)
Q Consensus 419 ni~t~~~l~a~~aa~y~~~~g~~G-l~~i~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~~~~~i~~~-~--~~~l~~~L 492 (985)
|. ....++.+++ ..+..+| ++++.++..++++++.+.|+++.|++++.+ ....-+.+.++ + ..++.++|
T Consensus 275 ~~---~~~~a~~~al--~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 349 (390)
T 1elu_A 275 AY---PQYAGLLAAL--QLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVDSPLGHRAIVQKL 349 (390)
T ss_dssp CH---HHHHHHHHHH--HHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEECSSSCHHHHHHHH
T ss_pred CH---HHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcCCCCCHHHHHHHH
Confidence 43 2333344443 3333445 889999999999999999999833988742 22333555554 2 78899999
Q ss_pred HHcCceeeeec-CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 493 YKIEMNLRVVD-SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 493 ~~~Gi~~~~~~-~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.++||.+.... ++.+|+|++..+|++|+++++++|..
T Consensus 350 ~~~gi~v~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~ 387 (390)
T 1elu_A 350 EEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLAD 387 (390)
T ss_dssp HHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred HHCCEEEEecCCCCeEEEecccCCCHHHHHHHHHHHHh
Confidence 99999987653 58899999999999999999999975
No 27
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.90 E-value=4.4e-22 Score=229.73 Aligned_cols=312 Identities=12% Similarity=0.075 Sum_probs=215.2
Q ss_pred HHHHHHHHHHHHHHHhCCCccc-e-ecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCC--cHHHHHhcCcEEE
Q 001990 630 YQEMFNNLGEWLCTITGFDSFS-L-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGT--NPATAAMCGMKIV 705 (985)
Q Consensus 630 ~~~~~~el~~~la~l~G~~~~~-~-~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~--~~~~~~~~G~~v~ 705 (985)
..+...++++++++++|.+... + +.++|++++..++.++ ..++++||+++..|.. +...++..|++++
T Consensus 42 ~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l--------~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~ 113 (416)
T 3isl_A 42 FTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASV--------IEPEDDVLIPIYGRFGYLLTEIAERYGANVH 113 (416)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHH--------CCTTCEEEEEESSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHh--------cCCCCEEEEecCCcccHHHHHHHHhcCCeeE
Confidence 3567889999999999988753 3 5667777664444433 1477899998876544 3334677899999
Q ss_pred EEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCCC
Q 001990 706 SVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGA 784 (985)
Q Consensus 706 ~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g~ 784 (985)
.+|.+.++.+|+++|++++++ +++++|++++| |++|.+. |+++|+++|+++|+++|+|++|..+...+ ....+++
T Consensus 114 ~v~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~~~~~~-~~~~~~~ 189 (416)
T 3isl_A 114 MLECEWGTVFDPEDIIREIKK--VKPKIVAMVHGETSTGRIH-PLKAIGEACRTEDALFIVDAVATIGGCEV-KVDEWKI 189 (416)
T ss_dssp EEECCTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEEC-CCHHHHHHHHHTTCEEEEECTTTTTTSCC-CTTTTTC
T ss_pred EEecCCCCCCCHHHHHHHHhh--CCCcEEEEEccCCCCceec-CHHHHHHHHHHcCCEEEEECCccccCCCc-chhhcCC
Confidence 999998899999999999973 36789999998 6799998 89999999999999999999986443322 2345689
Q ss_pred cEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCc---cccC------------CCC-------------CCCCCC
Q 001990 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHP---VVST------------GGI-------------PAPEKS 836 (985)
Q Consensus 785 Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~---~g~~------------~~~-------------~~~~~~ 836 (985)
|++++++||+++ |++|+|++++++++.+.+.... .||. ... ..+...
T Consensus 190 d~~~~s~~K~l~-----g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~ 264 (416)
T 3isl_A 190 DAAIGGTQKCLS-----VPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLN 264 (416)
T ss_dssp SEEECCSSSTTC-----CCSSEEEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCC
T ss_pred CEEEecCccccC-----CCCCeEEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCC
Confidence 999999999974 4557899999987654332110 1110 000 000011
Q ss_pred CCCCCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCC-ceeEEEEEEecCccc
Q 001990 837 QPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNG-TVAHEFIVDLRGLKN 914 (985)
Q Consensus 837 ~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~-~~~~~~vv~~~~~~~ 914 (985)
.++.+ ...+.++.+.+..+...|+.+..++..++++++.+.|++ ++.+. .+.+ ...+.+.+.++
T Consensus 265 ~~~~~--------~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~~~---- 330 (416)
T 3isl_A 265 HHTEA--------TTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLRLF--GDDSCKMPVVTCVEIP---- 330 (416)
T ss_dssp SSCCC--------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBC--SCGGGBCTTEEEEECC----
T ss_pred CCCCC--------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEec--cCccccCCcEEEEeCC----
Confidence 11111 122223344556665666788888889999999999987 44432 2111 11123445543
Q ss_pred cCCCCHHHHHHHHHHC-CCccCCCCCC-CCCEEEEeccCCCCHHh-hchHHHHHHHHHHHHHHHH
Q 001990 915 TAGIEPEDVAKRLMDY-GFHGPTMSWP-VPGTLMIEPTESESKVC-HNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 915 ~~g~~~~~l~~~L~e~-Gi~~~~~~~p-v~~~lris~t~~~t~ee-Id~~~~~i~aL~~i~~~~~ 976 (985)
.+.+..++.+.|.++ ||.+.....+ .++.+|++++..+|++| ++ +++++|+++++++.
T Consensus 331 -~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~---~~~~~l~~~~~~~~ 391 (416)
T 3isl_A 331 -GGIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVL---FVLAGLEAVLLRHN 391 (416)
T ss_dssp -TTCCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHH---HHHHHHHHHHHHTT
T ss_pred -CCCCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHH---HHHHHHHHHHHHcC
Confidence 256788999999887 9987543222 25789999988777777 99 99999999887653
No 28
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.90 E-value=1.4e-22 Score=238.39 Aligned_cols=309 Identities=15% Similarity=0.109 Sum_probs=209.9
Q ss_pred HHHHHHHHHHHHhCCCccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHH----HHHhcCcEE---
Q 001990 633 MFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKI--- 704 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~----~~~~~G~~v--- 704 (985)
+.+++++++++++|.+... +++++++++... +++.+. ..+ .++++||++...|.++.. .++..|+++
T Consensus 112 ~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~---~~~~~~-~~~-~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~ 186 (465)
T 3e9k_A 112 GDESIVGLMKDIVGANEKEIALMNALTVNLHL---LMLSFF-KPT-PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEES 186 (465)
T ss_dssp TTHHHHGGGHHHHTCCGGGEEECSCHHHHHHH---HHHHHC-CCC-SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHH
T ss_pred hHHHHHHHHHHHcCCCcCCEEEECCHHHHHHH---HHHHhc-ccc-CCCCEEEEcCCcCCchHHHHHHHHHHcCCcceee
Confidence 4567899999999998755 444555554432 333321 122 356789999887765332 345678764
Q ss_pred --EEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCc
Q 001990 705 --VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY 781 (985)
Q Consensus 705 --~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~pn-~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~ 781 (985)
..+|.+.++.+|+++|+++|+++.+++++|++++|+ ++|.+. |+++|.++||++|+++++|++|..+...+ ...+
T Consensus 187 ~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~-~l~~i~~la~~~g~~vi~D~a~~~g~~~~-~~~~ 264 (465)
T 3e9k_A 187 MRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHF-NIPAITKAGQAKGCYVGFDLAHAVGNVEL-YLHD 264 (465)
T ss_dssp EEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBC-CHHHHHHHHHHTTCEEEEECTTTTTTSCC-CHHH
T ss_pred eEEEecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceee-cHHHHHHHHHHcCCEEEEEhhhhcCCcCC-chhh
Confidence 445666778999999999997654689999999984 799998 89999999999999999999997554332 2235
Q ss_pred CCCcEEEeCCcccccccCCCCCC-cceeeeecccccCcCCCCccccCCCC----------CC-----CCCCCCCCCcccc
Q 001990 782 IGADVCHLNLHKTFCIPHGGGGP-GMGPIGVKKHLAPFLPSHPVVSTGGI----------PA-----PEKSQPLGTIAAA 845 (985)
Q Consensus 782 ~g~Di~~~s~hKtl~~p~g~GGP-g~G~l~~~~~l~~~lpg~~~g~~~~~----------~~-----~~~~~~t~~i~s~ 845 (985)
+++|++++++||+|+ ||| |+|++++++++.+.+.....|+.+.. .. .+.+.+++++
T Consensus 265 ~~~D~~~~s~~K~l~-----~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~--- 336 (465)
T 3e9k_A 265 WGVDFACWCSYKYLN-----AGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPI--- 336 (465)
T ss_dssp HTCCEEEECSSSTTC-----CCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCH---
T ss_pred cCCCEEEECcccccc-----cCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccH---
Confidence 789999999999984 456 47999999888766654444432110 00 0011122221
Q ss_pred cchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc----------CCeeEcCCCCc--eeEEEEEEecCcc
Q 001990 846 PWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH----------YPILFRGVNGT--VAHEFIVDLRGLK 913 (985)
Q Consensus 846 ~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~----------~~i~~~g~~~~--~~~~~vv~~~~~~ 913 (985)
..+.+..+.+..+...|+.+..++..++++++.+.|++. ..+.+.++.++ ....+.+.++
T Consensus 337 -----~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~--- 408 (465)
T 3e9k_A 337 -----LLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFS--- 408 (465)
T ss_dssp -----HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEEC---
T ss_pred -----HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEec---
Confidence 223334455666666677788888889999999999763 23333232111 1122344442
Q ss_pred ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEec-cCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 914 NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEP-TESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 914 ~~~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~-t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
.+..++.+.|.++||.+.. ..++.||+++ +.++|++||+ +++++|++++++
T Consensus 409 ----~~~~~l~~~L~~~Gi~v~~---~~~~~iRis~~~~~~t~edi~---~~~~~l~~~l~~ 460 (465)
T 3e9k_A 409 ----VPNKDVFQELEKRGVVCDK---RNPNGIRVAPVPLYNSFHDVY---KFTNLLTSILDS 460 (465)
T ss_dssp ----CTTCCHHHHHHTTTEECEE---ETTTEEEEBCCTTTCCHHHHH---HHHHHHHHHHTC
T ss_pred ----CCHHHHHHHHHHCCEEEec---CCCCEEEEeCcccCCCHHHHH---HHHHHHHHHHHh
Confidence 2346789999999998742 1258999999 7999999999 999999998764
No 29
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.90 E-value=1e-20 Score=216.26 Aligned_cols=347 Identities=14% Similarity=0.140 Sum_probs=242.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCccc--eecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHHHH
Q 001990 140 KFSKFDEGLTESQMIEHMQKLASMNKVYK--SFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQ 217 (985)
Q Consensus 140 ~lp~~~~~~se~e~~~~~~~~~~~n~~~~--~~lG~g~~~~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e~q 217 (985)
+|| ..++++.+++++++++...+..+. .|+|.+..+ ..|.+ .+++.+. +... ...+...++..+...+++
T Consensus 4 ~lp--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~v-~~a~~~~---~~~~-~~~~~~~~~~~~~~~~l~ 75 (397)
T 3f9t_A 4 NMQ--EKGVSEKEILEELKKYRSLDLKYEDGNIFGSMCSN-VLPIT-RKIVDIF---LETN-LGDPGLFKGTKLLEEKAV 75 (397)
T ss_dssp SCC--SSCCCHHHHHHHHHHHHTTSCCGGGTCBCSCSCCC-CCTHH-HHHHHHH---TTCC-TTSGGGBHHHHHHHHHHH
T ss_pred cCC--CCCCCHHHHHHHHHHhhccCCCCCCCCeEEEecCC-CcHHH-HHHHHHH---Hhhc-CCCcccChhHHHHHHHHH
Confidence 356 468899999999999987665544 677777543 23444 3344431 1110 111223346778888999
Q ss_pred HHHHHhhCCCCcceeeccchHHHHHHHHHHhhhh----------cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC
Q 001990 218 TMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ----------KGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD 287 (985)
Q Consensus 218 ~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~----------~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~ 287 (985)
+++++++|.+.+++.+++|||.+++.++.++... .++||+|++++..|+++...++. .|++++.++
T Consensus 76 ~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~v~ 151 (397)
T 3f9t_A 76 ALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREM----MDLEYIYAP 151 (397)
T ss_dssp HHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHH----HTCEEEEEC
T ss_pred HHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHH----cCceeEEEe
Confidence 9999999999888889999999988877665321 12489999999999999888764 378888876
Q ss_pred c--------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCC---C---------CC
Q 001990 288 L--------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL---K---------PP 344 (985)
Q Consensus 288 ~--------~~l~~-l~~-~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l---~---------~p 344 (985)
. +++++ +++ ++++|++.+| |++|.+.|+++|.++|+++|+++++|. .++.+.+ . .+
T Consensus 152 ~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De-a~~~~~~~~~~~~~~~~~~~~~ 230 (397)
T 3f9t_A 152 IKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDA-AFGGLVIPFLDDKYKKKGVNYK 230 (397)
T ss_dssp BCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEC-TTGGGTGGGCCGGGCCTTCCCC
T ss_pred eCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEc-cccchhhhhccccccccccccc
Confidence 5 34555 666 8999999887 689999999999999999999999953 3332211 1 12
Q ss_pred Ccc--cceEEEecC-ccccccCCCCCCceEEEEEchh-hHhcCC---CceeeeeecCCCCcceEEecccccccccccccC
Q 001990 345 GEL--GADIVVGSA-QRFGVPMGYGGPHAAFLATSQE-YKRMMP---GRIVGVSIDSSGKPALRVAMQTREQHIRRDKAT 417 (985)
Q Consensus 345 ~~~--GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~-~~~~lp---~~~vG~s~d~~g~~~~~l~l~tre~~~rre~at 417 (985)
-.+ |+|+++.+. |.+++| .+.|+++++++ +.+.+. +.+.+ + . + ....+|
T Consensus 231 ~~~~~~~~~~~~s~~K~~~~~-----~~~g~~~~~~~~~~~~~~~~~~~~~~------~-~----------~--~~~~~~ 286 (397)
T 3f9t_A 231 FDFSLGVDSITIDPHKMGHCP-----IPSGGILFKDIGYKRYLDVDAPYLTE------T-R----------Q--ATILGT 286 (397)
T ss_dssp CSGGGTCSEEECCTTTTTCCC-----SSCEEEEESSGGGGGGTCEECTTSSS------S-E----------E--CSSCSS
T ss_pred ccccccCCeEEEccccccCCC-----CCceEEEEeCHHHHHhhccCCccccC------C-C----------c--cccccc
Confidence 122 899999998 655433 24677777654 444441 11100 0 0 0 011233
Q ss_pred CCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecCCHHHHHHHHHHcCc
Q 001990 418 SNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEM 497 (985)
Q Consensus 418 sni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~L~~~Gi 497 (985)
.+.. ...+..+++ ..++.++++++.++..++++++++.|+++| ++++..+....+.+..++..++.+.|.++||
T Consensus 287 ~~~~---~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi 360 (397)
T 3f9t_A 287 RVGF---GGACTYAVL--RYLGREGQRKIVNECMENTLYLYKKLKENN-FKPVIEPILNIVAIEDEDYKEVCKKLRDRGI 360 (397)
T ss_dssp CCSH---HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCBSSCCSSSEEEEECTTHHHHHHHHHHTTC
T ss_pred cccc---hHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHCC-CEEEcCCCccEEEEEeCCHHHHHHHHHhCCe
Confidence 3321 233333443 455677889999999999999999999986 8866545455566776667889999999999
Q ss_pred eeeeec-CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 498 NLRVVD-SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 498 ~~~~~~-~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.+.... ++.+|++++..+|++|+++++++|..
T Consensus 361 ~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~ 393 (397)
T 3f9t_A 361 YVSVCNCVKALRIVVMPHIKREHIDNFIEILNS 393 (397)
T ss_dssp BCEECSSSSEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred EEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 887653 58999999999999999999999973
No 30
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.89 E-value=9.8e-22 Score=233.73 Aligned_cols=363 Identities=12% Similarity=0.051 Sum_probs=237.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcc--ceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHH
Q 001990 138 SMKFSKFDEGLTESQMIEHMQKLASMNKVY--KSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLN 215 (985)
Q Consensus 138 ~~~lp~~~~~~se~e~~~~~~~~~~~n~~~--~~~lG~g~~~~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e 215 (985)
++++| ..+.++.+++++++++...+... .+|+|.-+-+...|+.+.+.+.+. +-+....| ..+.+..+...+
T Consensus 66 ~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~p~f~~~~~~~~~~~~~~~e~l~~~--~~~~~~~~--~~~p~~~~le~~ 139 (511)
T 3vp6_A 66 NLELS--DHPESLEQILVDCRDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTST--ANTNMFTY--EIAPVFVLMEQI 139 (511)
T ss_dssp CCCCC--SSCCCHHHHHHHHHHHHHTSCCTTSTTEESSSSCCCCHHHHHHHHHHHH--HCCCSSCT--TTCHHHHHHHHH
T ss_pred CCCCC--CCCCCHHHHHHHHHHHhhccCCCCCCCceEeecCCCcHHHHHHHHHHHH--hccCCCCc--ccCchHHHHHHH
Confidence 56677 56889999999999998776432 346665433333444444332220 00001122 245566677777
Q ss_pred HHHHHHHhhCCCC--cceeeccchHHHHHHHHHHhhhh-------cC----CCCEEEEcCCCChhHHHHHHHhhcCCCe-
Q 001990 216 FQTMIADLTGLPM--SNASLLDEGTAAAEAMAMCNNIQ-------KG----KKKTFIIASNCHPQTIDICITRADGFDI- 281 (985)
Q Consensus 216 ~q~~ia~L~g~~~--~~~sl~~~~ta~~ea~~~a~~~~-------~~----~g~~Vlv~~~~h~s~~~~~~~~a~~~gi- 281 (985)
...++++++|++. .++.+++|||.+...++++.+.. .+ ++++|++++..|+++.+.++.+ +.|.
T Consensus 140 ~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~--g~g~~ 217 (511)
T 3vp6_A 140 TLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAAL--GFGTD 217 (511)
T ss_dssp HHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT--TSCGG
T ss_pred HHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHc--CCCCC
Confidence 8889999999984 57888999998877766654421 01 4678999999999999998653 2332
Q ss_pred EEEEeCc--------hhhhc-cCCC------EeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCCC-
Q 001990 282 KVVVSDL--------KDIDY-KSGD------VCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPP- 344 (985)
Q Consensus 282 ~v~~~~~--------~~l~~-l~~~------t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~p- 344 (985)
+++.++. ++|++ +.++ +++|++++| |++|.++|+++|+++||++|++++||+ .++.+.+..+
T Consensus 218 ~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~-a~~~~~~~~~~ 296 (511)
T 3vp6_A 218 NVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDA-AWGGGLLMSRK 296 (511)
T ss_dssp GEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEE-TTGGGGGGCTT
T ss_pred cEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEc-cchhhHhhChh
Confidence 5666643 45665 5433 889999987 679999999999999999999999954 4455544222
Q ss_pred ------CcccceEEEecC-ccccccCCCCCCceEEEEEchh-hHhc----CCCceeeeeecCCCCcceEEeccccccccc
Q 001990 345 ------GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQE-YKRM----MPGRIVGVSIDSSGKPALRVAMQTREQHIR 412 (985)
Q Consensus 345 ------~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~-~~~~----lp~~~vG~s~d~~g~~~~~l~l~tre~~~r 412 (985)
+..+||++++++ |+|++|. ++|+++++++ +++. .++.+.+...+..+. + +. .. ..
T Consensus 297 ~~~~~~g~~~aDsv~~~~hK~l~~p~-----g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~--~--~~--~~--~~ 363 (511)
T 3vp6_A 297 HRHKLNGIERANSVTWNPHKMMGVLL-----QCSAILVKEKGILQGCNQMHASYLFQQDKHYDVS--Y--DT--GD--KA 363 (511)
T ss_dssp TGGGGTTGGGCSEEEECTTSTTCCCS-----CCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGG--G--CC--GG--GS
T ss_pred hhhhccCCccCCEEEECcccccCCCc-----CeEEEEEeCHHHHHHHhccCCccccCcccccccc--c--Cc--cC--CC
Confidence 345789999999 7777663 4577888753 4433 233332211000000 0 00 00 00
Q ss_pred ccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcC--CCCcceEEEecCC------
Q 001990 413 RDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG--LPFFDTVKVKCAD------ 484 (985)
Q Consensus 413 re~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~--~~~~~~~~i~~~~------ 484 (985)
-+-++. . ...++.++ +..+|.+|++++.+++.++++++++.|+++.|++++. .+.+..++|....
T Consensus 364 ~~~~r~-~----~al~~~~a--l~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~ 436 (511)
T 3vp6_A 364 IQCGRH-V----DIFKFWLM--WKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGV 436 (511)
T ss_dssp SCSSCC-C----CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGGSSC
T ss_pred CCCCCc-h----HHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCcccccc
Confidence 000110 0 11222233 3667899999999999999999999999984499986 5666667775311
Q ss_pred -------------HHHHHHHHHHcCcee-ee--ecC--CeEEEEe-ccCCCHHHHHHHHHHHhC
Q 001990 485 -------------AHAIASAAYKIEMNL-RV--VDS--NTVTASF-DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 -------------~~~l~~~L~~~Gi~~-~~--~~~--~~lris~-~~~~t~edid~ll~~l~~ 529 (985)
..++.++|.++|+.+ .. ... +.+|+++ +..+|.+||++++++|..
T Consensus 437 ~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~ 500 (511)
T 3vp6_A 437 PDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIER 500 (511)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 236889999998754 22 122 3599999 789999999999999874
No 31
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.89 E-value=3.5e-21 Score=219.36 Aligned_cols=307 Identities=15% Similarity=0.194 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHHHHhCCCccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHH---HhcCcEEEE
Q 001990 631 QEMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA---AMCGMKIVS 706 (985)
Q Consensus 631 ~~~~~el~~~la~l~G~~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~---~~~G~~v~~ 706 (985)
.+...++++++++++|.+... ++.++|++++..++.++..+ + ..++++|+++...|..+...+ +..|++++.
T Consensus 43 ~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~---~-~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~ 118 (384)
T 1eg5_A 43 NLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAET---F-EKRKRTIITTPIEHKAVLETMKYLSMKGFKVKY 118 (384)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHH---T-TTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhh---c-cCCCCEEEECCCCchHHHHHHHHHHhcCCEEEE
Confidence 455778999999999987543 55677777765555544311 0 125689999988776554444 678999999
Q ss_pred EeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcC--CEEEEEccccccccCCCCCCcCC
Q 001990 707 VGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNG--GQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 707 v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g--~lliVD~a~~~~~~g~~~~g~~g 783 (985)
+|.++++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+++| +++|+|++|..+...+ ....++
T Consensus 119 v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~-~~~~~~ 193 (384)
T 1eg5_A 119 VPVDSRGVVKLEELEKLVD---EDTFLVSIMAANNEVGTIQ-PVEDVTRIVKKKNKETLVHVDAVQTIGKIPF-SLEKLE 193 (384)
T ss_dssp CCBCTTSCBCHHHHHHHCC---TTEEEEEEESBCTTTCBBC-CHHHHHHHHHHHCTTCEEEEECTTTTTTSCC-CCTTTC
T ss_pred EccCCCCccCHHHHHHHhC---CCCeEEEEECCCCCccccc-CHHHHHHHHHhcCCceEEEEEhhhhcCCccc-CchhcC
Confidence 9998888999999999997 68999999998 4789998 8999999999999 9999999986332221 223457
Q ss_pred CcEEEeCCcccccccCCCCCCcceeeeecccc--cCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHH
Q 001990 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHL--APFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 784 ~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l--~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~ 861 (985)
.|++++|+||+++ .+|+|++++++++ .+.+.+ .... .....+ +. +.....++.+++.
T Consensus 194 ~di~~~s~sK~~g------~~G~G~~~~~~~~~~~~~~~~----~~~~---~~~~~~--~~------~~~~~~a~~~al~ 252 (384)
T 1eg5_A 194 VDYASFSAHKFHG------PKGVGITYIRKGVPIRPLIHG----GGQE---RGLRSG--TQ------NVPGIVGAARAME 252 (384)
T ss_dssp CSEEEEEGGGGTS------CTTCEEEEECTTSCCCCSBCS----SCTT---TTTBCS--CC------CHHHHHHHHHHHH
T ss_pred CCEEEecHHHhcC------CCceEEEEEcCCCcccccccc----Cccc---ccccCC--CC------ChHHHHHHHHHHH
Confidence 8999999999863 3358999998875 222211 0000 000111 11 1122222334444
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-C
Q 001990 862 MMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-W 939 (985)
Q Consensus 862 ~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~-~ 939 (985)
.+ .+.+.+..++..++++++.+.|++ ++.+..+ +.+.....+.+.+. +.+..++.+.|.++||.+.... +
T Consensus 253 ~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~v~~g~~~ 324 (384)
T 1eg5_A 253 IA-VEELSEAAKHMEKLRSKLVSGLMNLGAHIITP-LEISLPNTLSVSFP------NIRGSTLQNLLSGYGIYVSTSSAC 324 (384)
T ss_dssp HH-HHTHHHHHHHHHHHHHHHHHHHHTTTCEECSC-TTSBCTTEEEEECT------TCCHHHHHHHHHHTTEECBC----
T ss_pred HH-HHhHHHHHHHHHHHHHHHHHHhCCCCeEEeCC-cccCCCCEEEEEeC------CCCHHHHHHHHhhCCeEEeccccc
Confidence 42 345667777888899999999987 4333211 11111122334443 3578899999999999875421 1
Q ss_pred -C-------------C-----CCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHHHc
Q 001990 940 -P-------------V-----PGTLMIEPTESESKVCHNREDLFFQILLSLTKFTTFA 978 (985)
Q Consensus 940 -p-------------v-----~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~~~ 978 (985)
+ + .+.+|++++..+|++|++ +++++|+++++++++.
T Consensus 325 ~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~---~~~~~l~~~~~~~~~~ 379 (384)
T 1eg5_A 325 TSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVD---YFLKKIEEILSFLDLT 379 (384)
T ss_dssp --------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHH---HHHHHHHHHHHHC---
T ss_pred cCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHH---HHHHHHHHHHHHHHhh
Confidence 1 1 268999999889999999 9999999998876543
No 32
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.89 E-value=1.3e-21 Score=224.77 Aligned_cols=312 Identities=15% Similarity=0.130 Sum_probs=211.5
Q ss_pred HHHHHHHHHHHHHHhCC-Ccc-ceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCc-HH---HHHhcCcEE
Q 001990 631 QEMFNNLGEWLCTITGF-DSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN-PA---TAAMCGMKI 704 (985)
Q Consensus 631 ~~~~~el~~~la~l~G~-~~~-~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~-~~---~~~~~G~~v 704 (985)
.+...++++++++++|. +.. .++.++|++++..++.+++.+. ..++++|+++...|... .. .++..|+++
T Consensus 66 ~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~----~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~ 141 (406)
T 1kmj_A 66 TEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSN----VRAGDNIIISQMEHHANIVPWQMLCARVGAEL 141 (406)
T ss_dssp HHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHH----CCTTCEEEEETTCCGGGTHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhc----CCCCCEEEEecccchHHHHHHHHHHHhCCCEE
Confidence 45677899999999998 443 4566777777765555543210 13678999988776543 22 245679999
Q ss_pred EEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCC
Q 001990 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 705 ~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g 783 (985)
+.+|.++++.+|+++|+++++ +++++|++++| |++|.+. |+++|+++|+++|+++++|++|..+...+ ....++
T Consensus 142 ~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~~~~~g~~~~-~~~~~~ 216 (406)
T 1kmj_A 142 RVIPLNPDGTLQLETLPTLFD---EKTRLLAITHVSNVLGTEN-PLAEMITLAHQHGAKVLVDGAQAVMHHPV-DVQALD 216 (406)
T ss_dssp EEECBCTTSCBCGGGHHHHCC---TTEEEEEEESBCTTTCCBC-CHHHHHHHHHHTTCEEEEECTTTTTTSCC-CHHHHT
T ss_pred EEEecCCCCCcCHHHHHHHhc---cCCeEEEEeCCCccccCcC-CHHHHHHHHHHcCCEEEEEchhhcCCCCC-cccccC
Confidence 999998888899999999997 78999999998 5799998 79999999999999999999986443221 122357
Q ss_pred CcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCC------C-C-----CCCCCCCCCCCcccccchhhh
Q 001990 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTG------G-I-----PAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 784 ~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~------~-~-----~~~~~~~~t~~i~s~~~g~~~ 851 (985)
.|++++|+||+| |++|+|++++++++.+.+.....+++. . . ..+....++++ ..
T Consensus 217 ~d~~~~s~~K~~------g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 282 (406)
T 1kmj_A 217 CDFYVFSGHKLY------GPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPN--------TG 282 (406)
T ss_dssp CSEEEEEGGGTT------SCTTCEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCC--------HH
T ss_pred CCEEEEEchhcc------CCCCcEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCC--------HH
Confidence 899999999987 344689999998776655432222110 0 0 00000111111 11
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001990 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 852 ~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~G 931 (985)
.+++..+.+..+...++.+..++..++++++.+.|++...+.+.++. .....+.+.++ +.+..++.+.|.++|
T Consensus 283 ~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~l~~~g 355 (406)
T 1kmj_A 283 GIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ-NRLGVIAFNLG------KHHAYDVGSFLDNYG 355 (406)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCT-TCCSEEEEEET------TCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-CcCCEEEEEEC------CCCHHHHHHHHhhCC
Confidence 11111134455544567777777888899999999873233332321 01122344543 456788999999999
Q ss_pred CccCCCC---------CCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 932 FHGPTMS---------WPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 932 i~~~~~~---------~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
|.+.... +..++.+|++++..+|++|++ +++++|+++++.+
T Consensus 356 i~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~---~~~~~l~~~~~~l 405 (406)
T 1kmj_A 356 IAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVD---RLVTGLQRIHRLL 405 (406)
T ss_dssp EECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHH---HHHHHHHHHHHHH
T ss_pred cEEEeccccchHHHHhcCCCCeEEEEeecCCCHHHHH---HHHHHHHHHHHhh
Confidence 9874211 112488999999999999999 9999999987754
No 33
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.89 E-value=4.7e-22 Score=227.39 Aligned_cols=313 Identities=11% Similarity=0.076 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHHHHhCCCcc--ceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCC--CcHHHHHhcCcEEEE
Q 001990 631 QEMFNNLGEWLCTITGFDSF--SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHG--TNPATAAMCGMKIVS 706 (985)
Q Consensus 631 ~~~~~el~~~la~l~G~~~~--~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg--~~~~~~~~~G~~v~~ 706 (985)
.+...++++++++++|.+.. .+++++|++++..++.++. .++++||++...|. .....++..|.+++.
T Consensus 55 ~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~ 126 (393)
T 3kgw_A 55 LQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLL--------EPGDSFLTGTNGIWGMRAAEIADRIGARVHQ 126 (393)
T ss_dssp HHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHC--------CTTCEEEEEESSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcC--------CCCCEEEEEeCCchhHHHHHHHHHcCCceEE
Confidence 45677899999999998753 3566777777654444331 47789999865331 113345678999999
Q ss_pred EeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCCCc
Q 001990 707 VGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGAD 785 (985)
Q Consensus 707 v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g~D 785 (985)
++.+.++.+|+++|++++++ +++++|++++| |++|.+. |+++|.++|+++|+++++|++|..+...+ ....+++|
T Consensus 127 ~~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~De~~~~g~~~~-~~~~~~~d 202 (393)
T 3kgw_A 127 MIKKPGEHYTLQEVEEGLAQ--HKPVLLFLVHGESSTGVVQ-PLDGFGELCHRYQCLLLVDSVASLGGVPI-YMDQQGID 202 (393)
T ss_dssp EECCTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEEC-CCTTHHHHHHHTTCEEEEECTTTTTTSCC-CTTTTTCC
T ss_pred EeCCCCCCCCHHHHHHHHhh--CCCcEEEEeccCCcchhhc-cHHHHHHHHHHcCCEEEEECCccccCccc-chhhcCCC
Confidence 99988889999999999983 27889999998 5799998 89999999999999999999986432222 23456899
Q ss_pred EEEeCCcccccccCCCCCCcceeeeecccccCcCCCCcccc---CCC----------CCCCCCCCCCCCcccccchhhhH
Q 001990 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVS---TGG----------IPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 786 i~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~---~~~----------~~~~~~~~~t~~i~s~~~g~~~~ 852 (985)
++++++||+|+ |++|+|++++++++.+.+.....++ ..+ ........++.+ ...
T Consensus 203 ~~~~s~sK~~~-----~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 269 (393)
T 3kgw_A 203 IMYSSSQKVLN-----APPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTP--------VTS 269 (393)
T ss_dssp EEEEESSSTTC-----CCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCC--------HHH
T ss_pred EEEecCccccc-----CCCceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCC--------HHH
Confidence 99999999984 4567899999987654432110000 000 000000111111 122
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHC-
Q 001990 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY- 930 (985)
Q Consensus 853 ~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~- 930 (985)
+.++.+.+..+..+++.+..++..++++++.+.|++ ++.+..+.........+.+.++ .+.+..++.+.|.++
T Consensus 270 ~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~ 344 (393)
T 3kgw_A 270 LYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTVTVP-----AGYNWRDIVSYVLDHF 344 (393)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEEEECC-----TTBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEEEeCC-----CCCCHHHHHHHHHHhC
Confidence 233344556556667788888889999999999987 4444211100011112334443 246788999999887
Q ss_pred CCccCCCCCC-CCCEEEEec-cCCCCHHhhchHHHHHHHHHHHHHHHH
Q 001990 931 GFHGPTMSWP-VPGTLMIEP-TESESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 931 Gi~~~~~~~p-v~~~lris~-t~~~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
||.+.....+ .++.+|+++ +..+|++|++ +++++|++++++++
T Consensus 345 gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~---~~~~~l~~~l~~~~ 389 (393)
T 3kgw_A 345 SIEISGGLGPTEERVLRIGLLGYNATTENVD---RVAEALREALQHCP 389 (393)
T ss_dssp CEECBCCCGGGTTTEEEEECCGGGCCHHHHH---HHHHHHHHHHHHSC
T ss_pred CEEEeCCcccCCCCEEEEEecccCCCHHHHH---HHHHHHHHHHHhhh
Confidence 9987543222 357899998 6566999999 99999999987654
No 34
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.89 E-value=1.9e-21 Score=224.64 Aligned_cols=313 Identities=15% Similarity=0.130 Sum_probs=212.3
Q ss_pred HHHHHHHHHHHHHhCC-Ccc-ceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCc----HHHHHhcCcEEE
Q 001990 632 EMFNNLGEWLCTITGF-DSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN----PATAAMCGMKIV 705 (985)
Q Consensus 632 ~~~~el~~~la~l~G~-~~~-~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~----~~~~~~~G~~v~ 705 (985)
+...++++.+++++|. +.. .+++++|++++..++.+++... ..++++|+++...|... ...++..|++++
T Consensus 72 ~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~----~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~ 147 (420)
T 1t3i_A 72 DAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNN----LKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLK 147 (420)
T ss_dssp HHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHH----CCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhcc----cCCCCEEEECcchhHHHHHHHHHHHHhcCcEEE
Confidence 4577899999999998 443 3566777777755555442100 13678999998877663 334567899999
Q ss_pred EEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCCC
Q 001990 706 SVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGA 784 (985)
Q Consensus 706 ~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g~ 784 (985)
.+|.++++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+++|+++|+|++|..+...+ ....++.
T Consensus 148 ~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~~~~~~-~~~~~~~ 222 (420)
T 1t3i_A 148 FVQLDEQESFDLEHFKTLLS---EKTKLVTVVHISNTLGCVN-PAEEIAQLAHQAGAKVLVDACQSAPHYPL-DVQLIDC 222 (420)
T ss_dssp EECBCTTSSBCHHHHHHHCC---TTEEEEEEESBCTTTCBBC-CHHHHHHHHHHTTCEEEEECTTTTTTSCC-CHHHHTC
T ss_pred EeccCCCCCcCHHHHHHhhC---CCceEEEEeCCcccccCcC-CHHHHHHHHHHcCCEEEEEhhhccCCccC-chhhcCC
Confidence 99998888899999999997 78999999998 5799998 89999999999999999999986433221 2234578
Q ss_pred cEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCC-C-----C-----CCCCCCCCCCCcccccchhhhHH
Q 001990 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTG-G-----I-----PAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 785 Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~-~-----~-----~~~~~~~~t~~i~s~~~g~~~~~ 853 (985)
|++++|+||.+ |++|+|++++++++.+.+.....++.. + . ..+....+++++ ..+
T Consensus 223 di~~~s~sK~~------~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 288 (420)
T 1t3i_A 223 DWLVASGHKMC------APTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAI--------AEA 288 (420)
T ss_dssp SEEEEEGGGTT------SCTTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCH--------HHH
T ss_pred CEEEEehhhhc------CCCceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccH--------HHH
Confidence 99999999965 345689999998776555322211100 0 0 000000111111 111
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCC---ceeEEEEEEecCccccCCCCHHHHHHHHHHC
Q 001990 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNG---TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY 930 (985)
Q Consensus 854 ~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~---~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~ 930 (985)
++..+.+..+...++.+..++..++++++.+.|++...+....+.. ...+.+.+.++ +.+..++.+.|.++
T Consensus 289 ~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~ 362 (420)
T 1t3i_A 289 IALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVA------GLHASDVATMVDQD 362 (420)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEET------TBCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEEC------CCCHHHHHHHHHHC
Confidence 1112244555445677777788889999999998732333222210 01223444553 34678899999999
Q ss_pred CCccCCCC---------CCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHH
Q 001990 931 GFHGPTMS---------WPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 931 Gi~~~~~~---------~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
||.+.... +..++.+|++++..+|++|++ +++++|++++++++
T Consensus 363 gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~~~~i~---~~~~~l~~~~~~~~ 414 (420)
T 1t3i_A 363 GIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEID---LFLQSLQATIRFFS 414 (420)
T ss_dssp TEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHH---HHHHHHHHHHHHTC
T ss_pred CeEEeeccccchHHHHhcCCCCeEEEecCCCCCHHHHH---HHHHHHHHHHHHhc
Confidence 99875431 111578999999999999999 99999999887654
No 35
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.89 E-value=9e-21 Score=219.55 Aligned_cols=312 Identities=11% Similarity=0.073 Sum_probs=213.5
Q ss_pred hcHHHHHHHHHHHHHHHhCCCcc-ceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHH---HhcCcE
Q 001990 628 QGYQEMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA---AMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~~~~-~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~---~~~G~~ 703 (985)
.+..+...++++++++++|.+.. .+++++|++++..++.++..+. . .++++|+++...|..+...+ ...|++
T Consensus 64 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l~~~~---~-~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~ 139 (423)
T 3lvm_A 64 WQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFY---Q-KKGKHIITSKTEHKAVLDTCRQLEREGFE 139 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHH---T-TTCCEEEEETTSCHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHHHHHhh---c-cCCCEEEECCccchHHHHHHHHHHHcCCE
Confidence 45567788999999999999864 3566777777766666554322 1 25789999998776665544 456999
Q ss_pred EEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcC
Q 001990 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~ 782 (985)
++.+|.++++.+|+++|+++++ +++++|++++| |++|.+. |+++|+++|+++|+++|+|++|..+...+ ....+
T Consensus 140 ~~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~Dea~~~~~~~~-~~~~~ 214 (423)
T 3lvm_A 140 VTYLAPQRNGIIDLKELEAAMR---DDTILVSIMHVNNEIGVVQ-DIAAIGEMCRARGIIYHVDATQSVGKLPI-DLSQL 214 (423)
T ss_dssp EEEECCCTTSCCCHHHHHHHCC---TTEEEEECCSBCTTTCBBC-CHHHHHHHHHHHTCEEEEECTTTTTTSCC-CTTTS
T ss_pred EEEeccCCCCccCHHHHHHhcC---CCcEEEEEeCCCCCCcccc-CHHHHHHHHHHcCCEEEEEhhhhcCCCCc-Chhhc
Confidence 9999999889999999999997 78999999988 5799998 89999999999999999999986433222 23456
Q ss_pred CCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHH
Q 001990 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 783 g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~ 862 (985)
++|++++|+||++ |++|+|++++++++...+.....+.... .....++.+ ...+.++.+.+..
T Consensus 215 ~~di~~~s~sK~~------g~~g~G~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--------~~~~~a~~~al~~ 277 (423)
T 3lvm_A 215 KVDLMSFSGHKIY------GPKGIGALYVRRKPRVRIEAQMHGGGHE---RGMRSGTLP--------VHQIVGMGEAYRI 277 (423)
T ss_dssp CCSEEEEESTTTT------SCSSCEEEEECBTTBCCCCCSSCSSCTT---TTTCCSCCC--------HHHHHHHHHHHHH
T ss_pred CCCEEEechHHhc------CCCCeEEEEEeccccCCCCccccCCccc---ccccCCCCC--------HHHHHHHHHHHHH
Confidence 8999999999965 3456899999987666554322221100 001111111 1112222233443
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCC-ceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC--C
Q 001990 863 MGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS--W 939 (985)
Q Consensus 863 lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~-~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~--~ 939 (985)
+.. .+.+..++..++++++.+.|++...+...++.. ...+.+.+.+. +.+..++.+.|.+ +.+.... .
T Consensus 278 ~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~l~~--i~v~~g~~~~ 348 (423)
T 3lvm_A 278 AKE-EMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFN------YVEGESLIMALKD--LAVSSGSACT 348 (423)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTBCTTEEEEEET------TSCHHHHHHHTTT--EECBCCCC--
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEeC------CCCHHHHHHHHhh--heeccCcccc
Confidence 332 256677778888999999997632333222211 11123344443 4678888888877 5443210 0
Q ss_pred C-------------C-----CCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHHH
Q 001990 940 P-------------V-----PGTLMIEPTESESKVCHNREDLFFQILLSLTKFTTF 977 (985)
Q Consensus 940 p-------------v-----~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~~ 977 (985)
+ + ++.+|++++..+|++|++ +++++|+++++++++
T Consensus 349 ~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~---~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 349 SASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEID---YTIELVRKSIGRLRD 401 (423)
T ss_dssp ---CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHH---HHHHHHHHHHHHHHT
T ss_pred CCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHH---HHHHHHHHHHHHhhc
Confidence 0 1 378999999999999999 999999999987764
No 36
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.89 E-value=2.9e-21 Score=229.59 Aligned_cols=358 Identities=13% Similarity=0.055 Sum_probs=237.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCc--cceecCCCCCCCCCcHHHHHHHHhCCcccccc-CCCh--hhHhhHHHHHH
Q 001990 139 MKFSKFDEGLTESQMIEHMQKLASMNKV--YKSFIGMGYYNTHVPPVILRNIMENPAWYTQY-TPYQ--AEIAQGRLESL 213 (985)
Q Consensus 139 ~~lp~~~~~~se~e~~~~~~~~~~~n~~--~~~~lG~g~~~~~~p~~v~~~i~~~~~~~t~~-~py~--~e~sqg~l~~i 213 (985)
.++| .++.++.+++++++++...+.. ...|++....+ ..|..+.. ++++++ ++++ .+.+.+..+..
T Consensus 64 ~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~------~~l~~~~n~~~~~~~~~~~~~~le 134 (504)
T 2okj_A 64 LELS--DHPESLEQILVDCRDTLKYGVRTGHPRFFNQLSTG-LDIIGLAG------EWLTSTANTNMFTYEIAPVFVLME 134 (504)
T ss_dssp CCCC--SSCCCHHHHHHHHHHHHHTSCCTTCTTEESSSSCC-CCHHHHHH------HHHHHHHCCBSSCTTTCHHHHHHH
T ss_pred CCCC--CCCCCHHHHHHHHHHHhhccCCCCCCCEEEEccCC-CCHHHHHH------HHHHHhhccCCCchhhChHHHHHH
Confidence 3566 5789999999999998876642 23455433221 23444321 233333 3332 34455555556
Q ss_pred HHHHHHHHHhhCCC--CcceeeccchHHHHHHHHHHhhhh-----cCCC-----C-EEEEcCCCChhHHHHHHHhhcCCC
Q 001990 214 LNFQTMIADLTGLP--MSNASLLDEGTAAAEAMAMCNNIQ-----KGKK-----K-TFIIASNCHPQTIDICITRADGFD 280 (985)
Q Consensus 214 ~e~q~~ia~L~g~~--~~~~sl~~~~ta~~ea~~~a~~~~-----~~~g-----~-~Vlv~~~~h~s~~~~~~~~a~~~g 280 (985)
.+..+++++++|++ ..++.+++|||.++..++.+.+.. +++| + +|++++..|+++.+.++.+ +.|
T Consensus 135 ~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~--g~g 212 (504)
T 2okj_A 135 QITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAAL--GFG 212 (504)
T ss_dssp HHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT--TSC
T ss_pred HHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHc--CCC
Confidence 66678999999998 678999999998877766654321 0123 5 7999999999999998754 235
Q ss_pred e-EEEEeCc--------hhhhc-cCC------CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCC
Q 001990 281 I-KVVVSDL--------KDIDY-KSG------DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP 343 (985)
Q Consensus 281 i-~v~~~~~--------~~l~~-l~~------~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~ 343 (985)
. +++.++. ++|++ +++ ++++|++++| |.+|.++|+++|+++||++|++++||+ ..+.+.+..
T Consensus 213 ~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~-a~~~~~~~~ 291 (504)
T 2okj_A 213 TDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDA-AWGGGLLMS 291 (504)
T ss_dssp GGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEE-TTGGGGGGC
T ss_pred cccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEeh-hhhhHHHhC
Confidence 4 6776654 34555 543 5899999998 679999999999999999999999953 223333221
Q ss_pred -------CCcccceEEEecC-ccccccCCCCCCceEEEEEch-hhHh----cCCCceeeeeecCCCCcceEEeccccc-c
Q 001990 344 -------PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQ-EYKR----MMPGRIVGVSIDSSGKPALRVAMQTRE-Q 409 (985)
Q Consensus 344 -------p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~-~~~~----~lp~~~vG~s~d~~g~~~~~l~l~tre-~ 409 (985)
++-.++|+++.++ |++++|. ++|++++++ ++++ ..++.+.+...+ .++.+++.++. +
T Consensus 292 ~~~~~~~~g~~~~D~i~~~~hK~~~~p~-----~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~ 362 (504)
T 2okj_A 292 RKHRHKLNGIERANSVTWNPHKMMGVLL-----QCSAILVKEKGILQGCNQMCAGYLFQPDKQ----YDVSYDTGDKAIQ 362 (504)
T ss_dssp TTTGGGGTTGGGCSEEEECTTSTTCCCS-----CCEEEEESSTTHHHHHHCCCCSSSCCSCCS----SCGGGCCGGGSSC
T ss_pred HhhHhhcCCcccCCEEEECchhhcCCCc-----ceEEEEEECHHHHHHHhcCCCccccCCccc----ccCcCCcccCCCC
Confidence 2234899999998 6665553 368999987 4554 345555442111 01111222221 3
Q ss_pred cccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcC--CCCcceEEEec-CC--
Q 001990 410 HIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG--LPFFDTVKVKC-AD-- 484 (985)
Q Consensus 410 ~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~--~~~~~~~~i~~-~~-- 484 (985)
..||.. +..+++. +..+|.+|++++.+++.++++++++.|+++.+++++. ++.+..|+|.. +.
T Consensus 363 ~~rr~~-------~l~~~a~-----l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~ 430 (504)
T 2okj_A 363 CGRHVD-------IFKFWLM-----WKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSL 430 (504)
T ss_dssp SSCBCC-------HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGG
T ss_pred CCCCcc-------HHHHHHH-----HHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccc
Confidence 444431 1223322 2556788999999999999999999999984499985 45555666643 11
Q ss_pred ----------------HHHHHHHHHHcCc-eeee--ecC--CeEEEEec-cCCCHHHHHHHHHHHhC
Q 001990 485 ----------------AHAIASAAYKIEM-NLRV--VDS--NTVTASFD-ETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 ----------------~~~l~~~L~~~Gi-~~~~--~~~--~~lris~~-~~~t~edid~ll~~l~~ 529 (985)
..++.++|.++|+ .+.. ... +.+|++++ .++|++|+++++++|..
T Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~ 497 (504)
T 2okj_A 431 RGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIER 497 (504)
T ss_dssp SSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3578889999996 4432 222 57999997 89999999999999974
No 37
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.89 E-value=3.1e-22 Score=234.90 Aligned_cols=370 Identities=11% Similarity=0.094 Sum_probs=244.9
Q ss_pred cccCCCCCH-HHHHHHHHHhCCCCHHHhhhhcCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCC-ccceecCCCCC
Q 001990 99 ARRHNSATP-EDQAKMSELVGLDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNK-VYKSFIGMGYY 176 (985)
Q Consensus 99 ~~~~~~~~~-~~~~~ml~~~g~~~~~~l~~~~ip~~~~~~~~~lp~~~~~~se~e~~~~~~~~~~~n~-~~~~~lG~g~~ 176 (985)
...++|.+= +.-++++ ++.++++++.++ ..+|| .+++++.++.+.++++...+. .|.++.+.|.+
T Consensus 26 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~------~~~lp--~~g~~~~~i~~~~~~~~~~~~~~yld~aa~~~~ 92 (456)
T 2z67_A 26 IEGLIPKNMEKRGELVL-----NEYLKEIEDVFN------HRKIP--ENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGER 92 (456)
T ss_dssp CCSSSCHHHHHHHHHHH-----HHHTHHHHHHHH------HCSCC--SSCCCHHHHHHHHHHHHTTBGGGCTTCEECSSC
T ss_pred hhccCcHHHHHHHHHHH-----HHHHHHHHHhhc------cCCCC--CCCCCHHHHHHHHHHHHhccccccccccccccc
Confidence 456676552 3333443 344556554221 13566 478999999999998877654 47778888887
Q ss_pred CCCCcHHHHHHHHh---C-----CccccccCCChhhHhhHHHHHHHHHHHHHHHhhCCCCcceeeccchH-HHHHHHHHH
Q 001990 177 NTHVPPVILRNIME---N-----PAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGT-AAAEAMAMC 247 (985)
Q Consensus 177 ~~~~p~~v~~~i~~---~-----~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~t-a~~ea~~~a 247 (985)
|..+-..+...... + .+|++ +.| ....+.+..+...++++++|+++|++.. +.+++|+| .+..+++++
T Consensus 93 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~la~~~g~~~~-~~~t~g~te~a~~~al~~ 169 (456)
T 2z67_A 93 EARTYSKIHEELSSGFCHGIGRSGNLVD-PQP-KASGASIMYALTNKILESFFKQLGLNVH-AIATPISTGMSISLCLSA 169 (456)
T ss_dssp CCCCSCHHHHHHTTTCTTCBSBTTBTTS-CCT-TBHHHHHHHHHHHHHHHHHHHHTTCCCE-EEEESSCHHHHHHHHHHH
T ss_pred cccccccccCccccccCCCccHHHHHHh-hCc-ccccCcHHHHHHHHHHHHHHHHcCCCCC-EEEeCcHHHHHHHHHHHH
Confidence 75433332211100 0 11111 122 1133445778888999999999999876 88889998 444444444
Q ss_pred hhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-----------hhhhc-c-C----CCEeEEEEEcC-CCC
Q 001990 248 NNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-----------KDIDY-K-S----GDVCGVLVQYP-GTE 309 (985)
Q Consensus 248 ~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~-----------~~l~~-l-~----~~t~~V~v~~p-n~~ 309 (985)
++..+ ++++||+++.+|+++...++. .|++++.++. ++|++ + + +++.+|++++| |.+
T Consensus 170 ~~~~~-~~~~vi~~~~~h~s~~~~~~~----~G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~t 244 (456)
T 2z67_A 170 ARKKY-GSNVVIYPYASHKSPIKAVSF----VGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPP 244 (456)
T ss_dssp HHHHH-CCCEEEEECCCCHHHHHHHHH----TTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTT
T ss_pred HHHhc-CCCEEEEECCCcHHHHHHHHH----cCCCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCC
Confidence 33211 567899999999998877653 5888776543 45655 6 4 47888888998 679
Q ss_pred eeeccHHHHHHHHHhCCcEEEEEe-cc-ccccCCC-CCCcc--cceEEEecC-ccccccCCCCCCceEEEEEc-hhhHhc
Q 001990 310 GEVLDYGDFIKNAHANGVKVVMAT-DL-LALTILK-PPGEL--GADIVVGSA-QRFGVPMGYGGPHAAFLATS-QEYKRM 382 (985)
Q Consensus 310 G~i~dl~~I~~~a~~~galliV~a-~~-~alg~l~-~p~~~--GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~-~~~~~~ 382 (985)
|.+.|+++|+++||++|++++||. .. .+.|... ....+ ++|++++++ |++++| .++|+++++ +++++.
T Consensus 245 G~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s~hK~~~~p-----~g~G~l~~~~~~~~~~ 319 (456)
T 2z67_A 245 RNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTP-----IGGGLVYSTDAEFIKE 319 (456)
T ss_dssp BCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCC-----SSCEEEEESCHHHHHH
T ss_pred CCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEEEcCCCCcCCC-----CCeEEEEEcCHHHHhh
Confidence 999999999999999999999952 11 1222211 11123 899999999 655544 357899995 667665
Q ss_pred CCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHh
Q 001990 383 MPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLK 462 (985)
Q Consensus 383 lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~ 462 (985)
+.+...|+ + + + ....++.+++ ..++.+|++++.++..+++++++++|+
T Consensus 320 l~~~~~g~----------------------~-----~-~--~~~~~~~aal--~~l~~~~~~~~~~~~~~~~~~l~~~L~ 367 (456)
T 2z67_A 320 ISLSYPGR----------------------A-----S-A--TPVVNTLVSL--LSMGSKNYLELVKNQKNSKKLLDELLN 367 (456)
T ss_dssp HHTTSCSC----------------------B-----C-S--HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCCCCC----------------------C-----C-C--CHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 52222220 0 0 0 1122333443 556788999999999999999999999
Q ss_pred cC----CCEEEcCCCCcceEEEec--CC-HHHHHHHHHHcCce-eeee--------------cCCeEEEEeccCCCHHHH
Q 001990 463 KL----GTVEVQGLPFFDTVKVKC--AD-AHAIASAAYKIEMN-LRVV--------------DSNTVTASFDETTTLEDV 520 (985)
Q Consensus 463 ~~----g~~~~~~~~~~~~~~i~~--~~-~~~l~~~L~~~Gi~-~~~~--------------~~~~lris~~~~~t~edi 520 (985)
++ | +.++... +.+.|.+ ++ ..++.++|.++||. ++.. ..+.+|+|++.++|++|+
T Consensus 368 ~~~~~~g-~~v~~~~--~~v~~~~~~~~~~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~~~~~~vr~s~~~~~t~eei 444 (456)
T 2z67_A 368 DLSKKTG-GKFLDVE--SPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDI 444 (456)
T ss_dssp HHHHHSS-CCBCCCC--CSSEEEEECSSCHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEEEEECCTTCCHHHH
T ss_pred hcccccC-CEecCCC--CeEEEEEecccHHHHHHHHHHHcCCCcceEEeecCccccccccccCcchhhhhhhcCCCHHHH
Confidence 87 6 7666433 4444444 55 58899999999862 2221 247899999999999999
Q ss_pred HHHHHHHhC
Q 001990 521 DKLFIVFAG 529 (985)
Q Consensus 521 d~ll~~l~~ 529 (985)
|+++++|+.
T Consensus 445 d~~l~~L~~ 453 (456)
T 2z67_A 445 VNSVSKLEK 453 (456)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999999975
No 38
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.89 E-value=1e-20 Score=217.19 Aligned_cols=304 Identities=17% Similarity=0.136 Sum_probs=218.2
Q ss_pred HHHHHHHHHHHHHHhhCC-CCcceeeccchHHHHHHHHHHhh---hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001990 209 RLESLLNFQTMIADLTGL-PMSNASLLDEGTAAAEAMAMCNN---IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 209 ~l~~i~e~q~~ia~L~g~-~~~~~sl~~~~ta~~ea~~~a~~---~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~ 284 (985)
..+.+.++++.+|+++|. ++.++.+++|+|.++++++.+++ .. +||+|++++..|+++...+...++..|.+++
T Consensus 65 ~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~--~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~ 142 (406)
T 1kmj_A 65 ATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVR--AGDNIIISQMEHHANIVPWQMLCARVGAELR 142 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCC--TTCEEEEETTCCGGGTHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhcCC--CCCEEEEecccchHHHHHHHHHHHhCCCEEE
Confidence 456677899999999999 66788889999999888887763 33 7899999999999988776665555688888
Q ss_pred EeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCC-CCCcccceEEE
Q 001990 285 VSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVV 353 (985)
Q Consensus 285 ~~~~--------~~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~-~p~~~GaDi~v 353 (985)
.++. +++++ +++++++|++++| |++|.+.|+++|.++|+++|+++++| +..+.|... +..++|+|+++
T Consensus 143 ~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-~~~~~g~~~~~~~~~~~d~~~ 221 (406)
T 1kmj_A 143 VIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVD-GAQAVMHHPVDVQALDCDFYV 221 (406)
T ss_dssp EECBCTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEE-CTTTTTTSCCCHHHHTCSEEE
T ss_pred EEecCCCCCcCHHHHHHHhccCCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEE-chhhcCCCCCcccccCCCEEE
Confidence 8754 45666 7788999999987 78999999999999999999999995 344554332 12346899999
Q ss_pred ecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeee-cCCCCcceEEecccccccccccccCCCccchhHHHHHHH
Q 001990 354 GSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSI-DSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMA 431 (985)
Q Consensus 354 ~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~-d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~a 431 (985)
+|. |.++ +||+|++++++++.+.+.....|++. +.. .......+ .....+.+.+|+++ ....++.+
T Consensus 222 ~s~~K~~g------~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~---~~~~a~~~ 289 (406)
T 1kmj_A 222 FSGHKLYG------PTGIGILYVKEALLQEMPPWEGGGSMIATV-SLSEGTTW--TKAPWRFEAGTPNT---GGIIGLGA 289 (406)
T ss_dssp EEGGGTTS------CTTCEEEEECHHHHHHCCCSSCSTTSEEEE-ETTTEEEE--CCTTGGGCCSSCCH---HHHHHHHH
T ss_pred EEchhccC------CCCcEEEEEeHHHHhhcCCcccCCCceeec-cccccccc--CCCchhccCCCCCH---HHHHHHHH
Confidence 998 6552 34589999999998888654444210 000 00000001 11122334556554 23333334
Q ss_pred HHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCC-CcceEEEecCC--HHHHHHHHHHcCceeeeec-----
Q 001990 432 AMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-FFDTVKVKCAD--AHAIASAAYKIEMNLRVVD----- 503 (985)
Q Consensus 432 a~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~~~~~i~~~~--~~~l~~~L~~~Gi~~~~~~----- 503 (985)
++ .++..++++++.++..++++++.+.|+++.|+++..+. ....+.+.+++ ..++.+.|.++||.+....
T Consensus 290 al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~ 367 (406)
T 1kmj_A 290 AL--EYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMP 367 (406)
T ss_dssp HH--HHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHH
T ss_pred HH--HHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCCEEEEEECCCCHHHHHHHHhhCCcEEEeccccchH
Confidence 43 44444578899999999999999999998338887431 23345555554 7889999999999875421
Q ss_pred -------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 504 -------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 -------~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
++.+|++++.++|++|+++++++|..
T Consensus 368 ~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~ 400 (406)
T 1kmj_A 368 LMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQR 400 (406)
T ss_dssp HHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999974
No 39
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.89 E-value=1.8e-21 Score=223.47 Aligned_cols=374 Identities=12% Similarity=0.062 Sum_probs=236.8
Q ss_pred CCccccccCCHHHHHHHHHHHhcCccCcCc---------ccccccc-eecccCccccccccccccccccCCCCcchhhhc
Q 001990 560 THPVFNKYHTEHELLRYIHLLQSKELSLCH---------SMIPLGS-CTMKLNATTEMMPVTWPSFANIHPFAPADQAQG 629 (985)
Q Consensus 560 ~~pv~~~~~se~e~~~~l~~l~~~~~~~~~---------~~~~lGs-~~~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G 629 (985)
.+| ++|++|.+++..|++++.+|..... +.+ +|+ |++.+-...+-. ....+|...+|.. .-+++
T Consensus 22 ~~p--~~g~~~~~i~~~l~~~~~~d~~~~~~~~~~geregrv-~~~~~~~r~~g~~hg~-~~~~d~l~~~~~~--~~~~~ 95 (450)
T 3bc8_A 22 KCP--EDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRV-ASALVARRHYRFIHGI-GRSGDISAVQPKA--AGSSL 95 (450)
T ss_dssp CCC--SSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCC-SCHHHHHHTTTCCSCB-CC-------CCSB--HHHHH
T ss_pred cCC--ccCCCHHHHHHHHHHHhhCCCCccccccccCcccceE-ecccccCCccceecch-hHHHHHHHhCccc--cCCcH
Confidence 467 6899999999999999999865442 211 232 433322222221 1112444444422 33455
Q ss_pred HHHHHHHHHHHHHHHhCCCcc--ceecChHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEE
Q 001990 630 YQEMFNNLGEWLCTITGFDSF--SLQPNAGAAGEYA-GLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVS 706 (985)
Q Consensus 630 ~~~~~~el~~~la~l~G~~~~--~~~~~sGa~g~~a-~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~ 706 (985)
..++..++..++.+++|++.. .+++++++.+..+ ++.++|.. + .++++||+++.+|.+..+++.+.|+++++
T Consensus 96 ~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~---~--~~~~~viv~r~aHkSv~kAl~l~Gl~p~~ 170 (450)
T 3bc8_A 96 LNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHK---R--PKAKYIIWPRIDQKSCFKSMVTAGFEPVV 170 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHH---C--TTCCEEEEECCCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchh---h--cCCCEEEEECCcHHHHHHHHHHcCCeeEE
Confidence 667788899999999999864 3556655534333 33344431 1 13578999999999999999999999999
Q ss_pred EeC---CCCCCCCHHHHHHHHHhcCCCeEEEEEEcCCCcc--ccccCHHHHHHHHHHcCCEEEEEccccccccCCCC--C
Q 001990 707 VGT---DAKGNINIEELRKAAEANRDNLSTLMVTYPSTHG--VYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS--P 779 (985)
Q Consensus 707 v~~---~~~g~iDle~L~~~i~~~~~~t~~Vvi~~pn~~G--~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~--~ 779 (985)
+++ ++.+.+|+++|+++|++++.+..++++++|+++| .++ ||++|+++||+||+|+|||+||..... +.. +
T Consensus 171 v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~d-dl~~Ia~ia~~~gi~l~VD~A~G~~~~-~~~~l~ 248 (450)
T 3bc8_A 171 IENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPD-RLEELAVICANYDIPHVVNNAYGLQSS-KCMHLI 248 (450)
T ss_dssp ECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCC-CHHHHHHHHHHHTCCEEEECTTTTTCH-HHHHHH
T ss_pred EEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceec-CHHHHHHHHHHCCCeEEEECCCchhhh-hhHhHH
Confidence 976 4558899999999998764245566777788776 778 999999999999999999999853211 111 1
Q ss_pred -C--c-CCCcEEEeCCcccccccCCCCCCcceeeeecc-cccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHH
Q 001990 780 -G--Y-IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 780 -g--~-~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~-~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~ 854 (985)
. . .++|+++.|.|||+..|++ .+++.+++ +..+.+..... ++ .++ ++ ..
T Consensus 249 ~~a~~~~~AD~~v~S~HK~l~a~~~-----~~~l~~rd~~~~~~~~~~~~-------------g~--~s~----Sp--sL 302 (450)
T 3bc8_A 249 QQGARVGRIDAFVQSLDKNFMVPVG-----GAIIAGFNEPFIQDISKMYP-------------GR--ASA----SP--SL 302 (450)
T ss_dssp HHHHHHSCCCEEEEEHHHHHSCCSS-----CEEEEESCHHHHHHHHHHSC-------------SC--BCS----HH--HH
T ss_pred HHHhcccCCCEEEECCccCCCchhc-----cEEEEecCHHHHHHHHHHhh-------------cC--Ccc----cH--HH
Confidence 1 1 2799999999999987765 35666653 33322210000 00 011 22 24
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-----cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHH
Q 001990 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-----HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 855 ~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-----~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e 929 (985)
..|+.+..+|.+|+.+..++.++++++++++|++ +..+. +... ......+.++.+......+...+.-.+..
T Consensus 303 ~l~~~l~~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l--~~~~-~~~~~~~~l~~~~~~~~~D~tkl~i~~~~ 379 (450)
T 3bc8_A 303 DVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLL--QTPH-NPISLAMTLKTIDGHHDKAVTQLGSMLFT 379 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBC--CCTT-CSSEEEEECTTTSSSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceec--CCcc-CCCcceeecccccccccCCCceeEEEecC
Confidence 4677777889999999988899999999999975 23332 1110 00123343332211112345566666666
Q ss_pred CCCccCCCC---------------C------CCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHHHc
Q 001990 930 YGFHGPTMS---------------W------PVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTTFA 978 (985)
Q Consensus 930 ~Gi~~~~~~---------------~------pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~~~ 978 (985)
.|+-...+. | .-...|.+..+...+++|++ +|+++|+++.++.++.
T Consensus 380 ~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~---~l~~~L~~~~~~~~~~ 446 (450)
T 3bc8_A 380 RQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVD---LFIKRLDKCLNIVRKE 446 (450)
T ss_dssp TTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHH---HHHHHHHHHHHHHHHH
T ss_pred CCCccceeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHH---HHHHHHHHHHHHHHhh
Confidence 553211000 0 01367888889999999999 9999999998776543
No 40
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.89 E-value=2e-21 Score=222.64 Aligned_cols=309 Identities=14% Similarity=0.114 Sum_probs=208.2
Q ss_pred HHHHHHHHHHHHHhCCCcc--ceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHH--HHHhcCcEEEEE
Q 001990 632 EMFNNLGEWLCTITGFDSF--SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA--TAAMCGMKIVSV 707 (985)
Q Consensus 632 ~~~~el~~~la~l~G~~~~--~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~--~~~~~G~~v~~v 707 (985)
+...++++++++++|.+.. .+++++|++++..++.++. .++++|+++...|..+.. .++..|++++.+
T Consensus 52 ~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v 123 (393)
T 2huf_A 52 KIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLL--------EDGDVILIGHTGHWGDRSADMATRYGADVRVV 123 (393)
T ss_dssp HHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHC--------CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHh--------CCCCEEEEECCCcchHHHHHHHHHcCCeeEEE
Confidence 5677899999999999763 3566777776654444331 367899998876644321 235589999999
Q ss_pred eCCCCCCCCHHHHHHHHHhcCC-CeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCCCc
Q 001990 708 GTDAKGNINIEELRKAAEANRD-NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGAD 785 (985)
Q Consensus 708 ~~~~~g~iDle~L~~~i~~~~~-~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g~D 785 (985)
|.++++.+|+++|+++++ + ++++|++++| |++|.+. |+++|+++|+++|+++|+|++|..+...+ ....+++|
T Consensus 124 ~~~~~~~~d~~~l~~~i~---~~~~~~v~~~~~~nptG~~~-~l~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~d 198 (393)
T 2huf_A 124 KSKVGQSLSLDEIRDALL---IHKPSVLFLTQGDSSTGVLQ-GLEGVGALCHQHNCLLIVDTVASLGGAPM-FMDRWEID 198 (393)
T ss_dssp ECCTTCCCCHHHHHHHHH---HHCCSEEEEESEETTTTEEC-CCTTHHHHHHHTTCEEEEECTTTBTTBCC-CTTTTTCS
T ss_pred eCCCCCCCCHHHHHHHHh---ccCCcEEEEEccCCCccccC-CHHHHHHHHHHcCCEEEEEcccccCCCCc-chhhcCcc
Confidence 998888999999999998 4 7889999998 5799998 79999999999999999999986443322 23456799
Q ss_pred EEEeCCcccccccCCCCCCcceeeeecccccCcCC-------CCcccc------CCCCCCCCCCCCCCCcccccchhhhH
Q 001990 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP-------SHPVVS------TGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 786 i~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lp-------g~~~g~------~~~~~~~~~~~~t~~i~s~~~g~~~~ 852 (985)
++++++||+|+ |++|.|++++++++.+.+. +..++. .+.........++.+. ..
T Consensus 199 ~~~~s~sK~l~-----g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 265 (393)
T 2huf_A 199 AMYTGSQKVLG-----APPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISS--------TL 265 (393)
T ss_dssp EEECCSSSTTC-----CCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCH--------HH
T ss_pred EEEECCCcccc-----cCCCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCH--------HH
Confidence 99999999974 3457799999876654321 111100 0000000011111111 11
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCC-ceeEEEEEEecCccccCCCCHHHHHHHHHHC
Q 001990 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY 930 (985)
Q Consensus 853 ~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~-~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~ 930 (985)
..++.+.+..+..+++.+..++..++++++.+.|++ ++.+. .+.+ .....+.+.++ .+.+..++.+.|.++
T Consensus 266 ~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~L~~~ 338 (393)
T 2huf_A 266 LYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFELY--ADPKDRLSTVTTIKVP-----QGVDWLKAAQYAMKT 338 (393)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBS--SCGGGBCTTEEEEECC-----TTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCeec--cCccccCCcEEEEEcC-----CCCCHHHHHHHHHHh
Confidence 222233455554456777778888899999999987 44432 2111 01112345543 246788999999865
Q ss_pred -CCccCCCCCC-CCCEEEEeccC-CCCHHhhchHHHHHHHHHHHHHHHH
Q 001990 931 -GFHGPTMSWP-VPGTLMIEPTE-SESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 931 -Gi~~~~~~~p-v~~~lris~t~-~~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
||.+.....+ .++.+|++++. .++++|++ +++++|++++++++
T Consensus 339 ~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~---~~~~~l~~~~~~~~ 384 (393)
T 2huf_A 339 YLVEISGGLGPTAGQVFRIGLMGQNATTERVD---RVLQVFQEAVAAVK 384 (393)
T ss_dssp HCEECBCCCGGGTTTEEEEECCGGGCSHHHHH---HHHHHHHHHHHHHC
T ss_pred CCEEEecCcccccCCEEEEEcccCcCCHHHHH---HHHHHHHHHHHHcC
Confidence 9987543211 25789999944 56799999 99999999988764
No 41
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.89 E-value=3.5e-21 Score=222.50 Aligned_cols=306 Identities=14% Similarity=0.141 Sum_probs=219.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHh-hhh--cCCCCE-EEEcCCCChhHHHHHHHhhcCC--Ce
Q 001990 208 GRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCN-NIQ--KGKKKT-FIIASNCHPQTIDICITRADGF--DI 281 (985)
Q Consensus 208 g~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~-~~~--~~~g~~-Vlv~~~~h~s~~~~~~~~a~~~--gi 281 (985)
|..+.+.++++.+++++|.++.++.++.|+|.++++++.++ .+. +++||+ |+++...|+++...+..+++.. |+
T Consensus 68 ~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~ 147 (416)
T 1qz9_A 68 GWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGY 147 (416)
T ss_dssp SGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSC
T ss_pred hHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCc
Confidence 34466778999999999998778888889998887666543 220 026775 6677789999888776544433 88
Q ss_pred EEEEeC-chhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCC-CCcccceEEEecC-
Q 001990 282 KVVVSD-LKDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP-PGELGADIVVGSA- 356 (985)
Q Consensus 282 ~v~~~~-~~~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~-p~~~GaDi~v~s~- 356 (985)
+++.++ ++++++ +++++++|++.+| |.+|.+.|+++|.++|+++|+++++| ...+.|.... ..++|+|++++|.
T Consensus 148 ~~~~v~~~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-~a~~~g~~~~~~~~~~~d~~~~s~~ 226 (416)
T 1qz9_A 148 TLRLVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWD-LAHSAGAVPVDLHQAGADYAIGCTY 226 (416)
T ss_dssp EEEEESSGGGHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEE-CTTTTTTSCCCHHHHTCSEEEECSS
T ss_pred eEEEeCcHHHHHHHhCCCceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEE-ccccccCcCCChhhcCCCEEEecCc
Confidence 999988 688877 8889999999988 68999999999999999999999995 3445554322 2357899999998
Q ss_pred ccccccCCCCCCce-EEEEEchhhHhcCCCceeeee-ecC--CCCcceEEecccccccccccccCCCccchhHHHHHHHH
Q 001990 357 QRFGVPMGYGGPHA-AFLATSQEYKRMMPGRIVGVS-IDS--SGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 357 k~lg~P~~~GGP~~-G~l~~~~~~~~~lp~~~vG~s-~d~--~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa 432 (985)
|+++ |||++ |++++++++.+.+.....|+. ... +....|.+ .....+...+|.|+ ....++.++
T Consensus 227 K~l~-----~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~a~~~a 294 (416)
T 1qz9_A 227 KYLN-----GGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEP----SNGIARYLCGTQPI---TSLAMVECG 294 (416)
T ss_dssp STTC-----CCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCB----CSSGGGGCCSCCCH---HHHHHHHHH
T ss_pred ccCC-----CCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccCC----CcchHHhcCCCCCH---HHHHHHHHH
Confidence 7663 56777 999999998877755444431 000 00000110 01111223445554 334444444
Q ss_pred HHHHHcCcchHHHHHHHHHHHHHHHHHHHhcC----CCEEEcCCC----CcceEEEecCCHHHHHHHHHHcCceeeeecC
Q 001990 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQGLP----FFDTVKVKCADAHAIASAAYKIEMNLRVVDS 504 (985)
Q Consensus 433 ~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~~~~----~~~~~~i~~~~~~~l~~~L~~~Gi~~~~~~~ 504 (985)
+ ..+..+|++++.++..++++++.+.|+++ | +++..+. ....+.+..++..++.+.|.++||.+....+
T Consensus 295 l--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~~~~ 371 (416)
T 1qz9_A 295 L--DVFAQTDMASLRRKSLALTDLFIELVEQRCAAHE-LTLVTPREHAKRGSHVSFEHPEGYAVIQALIDRGVIGDYREP 371 (416)
T ss_dssp H--HHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSC-CEECSCSSGGGBCSEEEEECTTHHHHHHHHHTTTEECEEETT
T ss_pred H--HHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCC-eEEeCCCCHHHcCCEEEEecCCHHHHHHHHHhCCcEeccCCC
Confidence 4 55656789999999999999999999986 5 8886432 2344667766678899999999998865457
Q ss_pred CeEEEEec-cCCCHHHHHHHHHHHhC
Q 001990 505 NTVTASFD-ETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 505 ~~lris~~-~~~t~edid~ll~~l~~ 529 (985)
+.+|++++ .++|++|+++++++|..
T Consensus 372 ~~lRis~~~~~~t~~~i~~~~~~l~~ 397 (416)
T 1qz9_A 372 RIMRFGFTPLYTTFTEVWDAVQILGE 397 (416)
T ss_dssp TEEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred CeEEEeCcccCCCHHHHHHHHHHHHH
Confidence 89999998 59999999999999974
No 42
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.89 E-value=1.7e-21 Score=223.15 Aligned_cols=314 Identities=11% Similarity=0.043 Sum_probs=209.9
Q ss_pred HHHHHHHHHHHHHHHhCCCcc-ceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcH--HHHHhcCcEEEE
Q 001990 630 YQEMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP--ATAAMCGMKIVS 706 (985)
Q Consensus 630 ~~~~~~el~~~la~l~G~~~~-~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~--~~~~~~G~~v~~ 706 (985)
..+...++++++++++|.+.. .+++++|++++..++.++ . .++++|++++..|..++ ..++..|++++.
T Consensus 40 ~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~---~-----~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~ 111 (392)
T 2z9v_A 40 FQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASL---I-----SPDDVVLNLASGVYGKGFGYWAKRYSPHLLE 111 (392)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHH---C-----CTTCCEEEEESSHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHh---c-----CCCCEEEEecCCcccHHHHHHHHHcCCceEE
Confidence 345677899999999998743 355577776664444332 1 36788999887665443 123457999999
Q ss_pred EeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCCCc
Q 001990 707 VGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGAD 785 (985)
Q Consensus 707 v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g~D 785 (985)
+++++++.+|+++|++++++. +++++|++++| |++|.+. |+++|+++|+++|+++|+|++|..+...+ ....+++|
T Consensus 112 v~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~g~~~~-~~~~~~~d 188 (392)
T 2z9v_A 112 IEVPYNEAIDPQAVADMLKAH-PEITVVSVCHHDTPSGTIN-PIDAIGALVSAHGAYLIVDAVSSFGGMKT-HPEDCKAD 188 (392)
T ss_dssp EECCTTSCCCHHHHHHHHHHC-TTCCEEEEESEEGGGTEEC-CHHHHHHHHHHTTCEEEEECTTTBTTBSC-CGGGGTCS
T ss_pred eeCCCCCCCCHHHHHHHHhcC-CCCcEEEEeccCCCCceec-cHHHHHHHHHHcCCeEEEEcccccCCccc-ccccccce
Confidence 999888889999999999632 57889999988 5799998 89999999999999999999986433222 22345789
Q ss_pred EEEeCCcccccccCCCCCCcceeeeecccccCcCC------C-CccccCC--CCC-CCCCCCCCCCcccccchhhhHHHH
Q 001990 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP------S-HPVVSTG--GIP-APEKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 786 i~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lp------g-~~~g~~~--~~~-~~~~~~~t~~i~s~~~g~~~~~~~ 855 (985)
++++|+||+++ |++|+|++++++++.+.+. + ...+... ... ......++. +...+.+
T Consensus 189 ~~~~s~sK~~~-----~~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~a 255 (392)
T 2z9v_A 189 IYVTGPNKCLG-----APPGLTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTP--------SVSEING 255 (392)
T ss_dssp EEEECSSSTTC-----CCSCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCC--------CHHHHHH
T ss_pred EEEecCccccc-----CCCceeEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCC--------CHHHHHH
Confidence 99999999884 4567899999987654331 1 1111000 000 000011111 1112222
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCC-CceeEEEEEEecCccccCCCCHHHHHHHHHHC-CC
Q 001990 856 SYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVN-GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY-GF 932 (985)
Q Consensus 856 A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~-~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~-Gi 932 (985)
+.+.+..+...|+.+..++..++++++.+.|++ ++.+..+ +. ....+.+.+.++ .+.+..++.+.|.++ ||
T Consensus 256 ~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~l~~~L~~~~gi 329 (392)
T 2z9v_A 256 LDVALDLYLNEGPEAVWARHALTAKAMRAGVTAMGLSVWAA-SDSIASPTTTAVRTP-----DGVDEKALRQAARARYGV 329 (392)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSS-SGGGBCTTEEEEECC-----TTCCHHHHHHHHHHHHCE
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCeeccC-CccccCCceEEEECC-----CCCCHHHHHHHHHhcCCE
Confidence 334455555556777778888899999999987 4443210 11 011222345543 246788999999987 99
Q ss_pred ccCCCCC-CCCCEEEEeccC-CCCHHhhchHHHHHHHHHHHHHHHH
Q 001990 933 HGPTMSW-PVPGTLMIEPTE-SESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 933 ~~~~~~~-pv~~~lris~t~-~~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
.+..... ..++.+|+++.. .+|++|++ +++++|++++++++
T Consensus 330 ~v~~g~~~~~~~~lRi~~~~~~~~~~~i~---~~~~~l~~~~~~~~ 372 (392)
T 2z9v_A 330 VFSSGRGETLGKLTRIGHMGPTAQPIYAI---AALTALGGAMNAAG 372 (392)
T ss_dssp ECEECCGGGTTTEEEEECCGGGCSHHHHH---HHHHHHHHHHHHTT
T ss_pred EEecCCCCCCCCeEEEeCcccccCHHHHH---HHHHHHHHHHHHcC
Confidence 8743221 125789999644 89999999 99999999887643
No 43
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.89 E-value=5.9e-21 Score=217.54 Aligned_cols=311 Identities=12% Similarity=0.102 Sum_probs=210.9
Q ss_pred hcHHHHHHHHHHHHHHHhCCCcc-ceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHH---hcCcE
Q 001990 628 QGYQEMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA---MCGMK 703 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~~~~-~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~---~~G~~ 703 (985)
.+..+...++++++++++|.+.. .+++++|++++..++.++..+.. .++++|++++..|.++...+. ..|++
T Consensus 39 ~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~ 114 (382)
T 4eb5_A 39 FKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNA----RKGKHILVSAVEHMSVINPAKFLQKQGFE 114 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHHG----GGCCEEEEETTCCHHHHHHHHHHTTTTCE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhcc----CCCCEEEECCCcchHHHHHHHHHHhCCcE
Confidence 34566788999999999998753 35667777777666555542111 256899999987766555443 36999
Q ss_pred EEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcC
Q 001990 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~ 782 (985)
++.+|+++++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+++|++ |+|++|..+...+ ....+
T Consensus 115 ~~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~-i~D~a~~~g~~~~-~~~~~ 188 (382)
T 4eb5_A 115 VEYIPVGKYGEVDVSFIDQKLR---DDTILVSVQHANNEIGTIQ-PVEEISEVLAGKAAL-HIDATASVGQIEV-DVEKI 188 (382)
T ss_dssp EEEECBCTTSCBCHHHHHHHCC---TTEEEEECCSBCTTTCBBC-CHHHHHHHHTTSSEE-EEECTTTBTTBCC-CHHHH
T ss_pred EEEeccCCCCccCHHHHHHHhc---CCCeEEEEeccCCCccccC-CHHHHHHHHHHCCCE-EEEcchhcCCccc-Ccccc
Confidence 9999998889999999999997 68999999988 5799998 899999999999999 9999986432221 12235
Q ss_pred CCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHH
Q 001990 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 783 g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~ 862 (985)
++|++++|+||+++ .+|+|+++++++. .+.....++... .....++.+. ..+.++.+.+..
T Consensus 189 ~~di~~~s~sK~~g------~~g~G~~~~~~~~--~l~~~~~~~~~~---~~~~~~~~~~--------~~~~~~~~al~~ 249 (382)
T 4eb5_A 189 GADMLTISSNDIYG------PKGVGALWIRKEA--KLQPVILGGGQE---NGLRSGSENV--------PSIVGFGKAAEI 249 (382)
T ss_dssp TCSEEEEETGGGTC------CSSCEEEEEETTC--CCCCSSCSSCTG---GGTSCSCCCH--------HHHHHHHHHHHH
T ss_pred CCCEEEeehHHhcC------CCceEEEEEcccc--ccCceecCCCcc---ccccCCCccH--------HHHHHHHHHHHH
Confidence 78999999999862 2368899888763 111111111000 0011111111 111222233443
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCC-ceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC---
Q 001990 863 MGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS--- 938 (985)
Q Consensus 863 lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~-~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~--- 938 (985)
+ .+++.+..++..++++++.+.|++...+.+.++.+ ...+.+.+.++ +.+..++.+.|.++||.+....
T Consensus 250 ~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~gi~v~~g~~~~ 322 (382)
T 4eb5_A 250 T-AMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFS------YIEGESIVLSLDMAGIQASTGSACS 322 (382)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEET------TSCHHHHHHHHHHHTCBCBCCCGGG
T ss_pred H-HHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeC------CcCHHHHHHHHHHCCEEEecccccc
Confidence 3 24677777788889999999998732333323211 11223445543 4578899999999999875321
Q ss_pred ------------CC-----CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHHH
Q 001990 939 ------------WP-----VPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTTF 977 (985)
Q Consensus 939 ------------~p-----v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~~ 977 (985)
++ ..+.+|++++..+|++|++ +++++|+++++++++
T Consensus 323 ~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~---~~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 323 SKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVD---RLLEVLPGVIERLRS 375 (382)
T ss_dssp TSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHH---HHHHHHHHHHHHHHH
T ss_pred CCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHH---HHHHHHHHHHHHHHH
Confidence 01 1378999999889999999 999999999988775
No 44
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.89 E-value=5.5e-21 Score=217.26 Aligned_cols=292 Identities=16% Similarity=0.130 Sum_probs=215.5
Q ss_pred HhhHHHHHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhh-cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001990 205 IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ-KGKKKTFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 205 ~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~-~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v 283 (985)
...+..+.+.++++.+++++|.++.++.+++|+|.+++.++.++... .++||+|++++..|+++...++.. +..|+++
T Consensus 37 ~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~-~~~g~~~ 115 (382)
T 4hvk_A 37 YGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFL-QKQGFEV 115 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHH-HHTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHHHH-HhcCCEE
Confidence 45666788889999999999998888989999999888887765420 028899999999999999887654 3568898
Q ss_pred EEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCC-CCcccceEE
Q 001990 284 VVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP-PGELGADIV 352 (985)
Q Consensus 284 ~~~~~--------~~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~-p~~~GaDi~ 352 (985)
+.++. ++|++ +++++++|++.+| |++|.+.|+++|.++|+++|+ +++| +.++.+.... ...+|+|++
T Consensus 116 ~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D-~a~~~~~~~~~~~~~~~d~~ 193 (382)
T 4hvk_A 116 EYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHID-ATASVGQIEVDVEKIGADML 193 (382)
T ss_dssp EEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEE-CTTTBTTBCCCHHHHTCSEE
T ss_pred EEeccCCCCCcCHHHHHHHhccCceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEE-hHHhcCCCCCCchhcCCCEE
Confidence 88764 45666 7889999999987 789999999999999999999 8885 3445554432 245789999
Q ss_pred EecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHH
Q 001990 353 VGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 353 v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa 432 (985)
++|..++. |++|+|+++++++. .+...+.|+ .+..+...+|.|. ....++.++
T Consensus 194 ~~s~~K~~-----g~~g~g~~~~~~~~--~~~~~~~~~-----------------~~~~~~~~~~~~~---~~~~~~~~a 246 (382)
T 4hvk_A 194 TISSNDIY-----GPKGVGALWIRKEA--KLQPVILGG-----------------GQENGLRSGSENV---PSIVGFGKA 246 (382)
T ss_dssp EEESGGGT-----SCTTCEEEEEETTC--CCCCSSCSS-----------------CTGGGTSCSCCCH---HHHHHHHHH
T ss_pred EEeHHHhc-----CCCceEEEEEcCcc--CcCcccccC-----------------CCcCccccCCcCH---HHHHHHHHH
Confidence 99983343 23457899988764 332222221 0112233455554 344444454
Q ss_pred HHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCC--C-cceEEEecCC--HHHHHHHHHHcCceeeeec----
Q 001990 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP--F-FDTVKVKCAD--AHAIASAAYKIEMNLRVVD---- 503 (985)
Q Consensus 433 ~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~--~-~~~~~i~~~~--~~~l~~~L~~~Gi~~~~~~---- 503 (985)
+ .+ ..++++++.++..++++++.+.|++++++++...+ . .+.+.+..++ ..++.+.|.++||.++...
T Consensus 247 l--~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~ 323 (382)
T 4hvk_A 247 A--EI-TAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSS 323 (382)
T ss_dssp H--HH-HHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTCCHHHHHHHHHHTTCBCBCC-----
T ss_pred H--HH-HHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECCCCHHHHHHHHHHCCEEEeeCCccCC
Confidence 4 22 23688999999999999999999988448887432 1 2345666554 8899999999999875311
Q ss_pred -------------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 504 -------------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 -------------------~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
++.+|++++..+|++|+++++++|..
T Consensus 324 ~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~ 368 (382)
T 4hvk_A 324 KTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPG 368 (382)
T ss_dssp ---CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999974
No 45
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.89 E-value=6.9e-22 Score=225.08 Aligned_cols=311 Identities=10% Similarity=0.026 Sum_probs=206.7
Q ss_pred cHHHHHHHHHHHHHHHhCCCc--cc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcH--HHHHhcCcE
Q 001990 629 GYQEMFNNLGEWLCTITGFDS--FS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP--ATAAMCGMK 703 (985)
Q Consensus 629 G~~~~~~el~~~la~l~G~~~--~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~--~~~~~~G~~ 703 (985)
+..+...++++++++++|.+. .. +++++|++++..++.++. .++++||++.+.+..+. ..+...|++
T Consensus 49 ~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~g~~ 120 (376)
T 3f0h_A 49 EFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF--------TKKDKVLVIDGGSFGHRFVQLCEIHEIP 120 (376)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC--------CTTCCEEEEESSHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc--------CCCCeEEEEeCChhhHHHHHHHHHcCCc
Confidence 445678899999999999874 23 446777776654444332 36788888764222222 225577999
Q ss_pred EEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcC
Q 001990 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~ 782 (985)
++.++.+.++.+|+++|+++++ +++++|++++| |++|.+. |+++|+++|+++|+++++|++|..+...+ ....+
T Consensus 121 ~~~v~~~~~~~~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~~~~~~~~~~-~~~~~ 195 (376)
T 3f0h_A 121 YVALKLEHGKKLTKEKLYEYDN---QNFTGLLVNVDETSTAVLY-DTMMIGEFCKKNNMFFVCDCVSAFLADPF-NMNEC 195 (376)
T ss_dssp EEEEECCTTCCCCHHHHHTTTT---SCCCEEEEESEETTTTEEC-CHHHHHHHHHHTTCEEEEECTTTTTTSCC-CHHHH
T ss_pred eEEEeCCCCCCCCHHHHHHhhc---cCceEEEEecccCCcceec-CHHHHHHHHHHcCCEEEEEcCccccCccc-ccccc
Confidence 9999998888999999999876 78999999987 6799998 79999999999999999999985332211 22346
Q ss_pred CCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCC-ccccCCCC---CCCCCCCCCCCcccccchhhhHHHHHHH
Q 001990 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSH-PVVSTGGI---PAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 783 g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~-~~g~~~~~---~~~~~~~~t~~i~s~~~g~~~~~~~A~a 858 (985)
++|++++++||+|+ |++|+|++++++++.+.+... ..+...+. .......++.... ....+.++.+
T Consensus 196 ~~d~~~~s~~K~l~-----~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~a~~~ 265 (376)
T 3f0h_A 196 GADVMITGSQKVLA-----CPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTP-----AVGILLQINE 265 (376)
T ss_dssp TCSEEEEETTTTTC-----CCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCC-----CHHHHHHHHH
T ss_pred CccEEEecCccccc-----CCCceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCC-----cHHHHHHHHH
Confidence 78999999999984 356789999998765443211 00000000 0000001112211 1111223344
Q ss_pred HHHHhchh-hHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHC-CCccCC
Q 001990 859 YIAMMGSK-GLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY-GFHGPT 936 (985)
Q Consensus 859 ~l~~lg~~-gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~-Gi~~~~ 936 (985)
.+..+..+ ++.+..++..++++++.+.|++. ++....+. .....+.+... +.+..++.+.|.++ ||.+..
T Consensus 266 al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~-~~~~~~~~~~~------~~~~~~l~~~l~~~~gi~v~~ 337 (376)
T 3f0h_A 266 RLKEIKKHGGADAEVARIASQAADFRAKIKDL-PFELVSES-PANGVTSVHPT------TANAYDIFLKLKDEYGIWICP 337 (376)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS-SEEECCSS-BBTTEEEEEES------SSCHHHHHHHHHHHSSEECEE
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCccCccc-cCceEEEEeCC------CCCHHHHHHHHHHhCCEEEec
Confidence 55555555 67777788888899999999872 22222211 11112333322 56788999999988 998743
Q ss_pred CCC-CCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHH
Q 001990 937 MSW-PVPGTLMIEPTESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 937 ~~~-pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
... ...+.+|++++..+|++|++ +++++|+++++
T Consensus 338 g~~~~~~~~lRis~~~~~t~e~i~---~~~~~l~~~l~ 372 (376)
T 3f0h_A 338 NGGEMKDTIFRVGHIGALTHEDNT---TLVNAFKDLQK 372 (376)
T ss_dssp CCGGGTTTCEEEECCSSCCHHHHH---HHHHHHHHHHH
T ss_pred CccccCCCEEEEecCCCCCHHHHH---HHHHHHHHHHH
Confidence 211 12478999999999999999 99999998765
No 46
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.89 E-value=2.3e-21 Score=219.16 Aligned_cols=314 Identities=11% Similarity=0.071 Sum_probs=205.9
Q ss_pred HHHHHHHHHHHHhCCCc---cceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEc-CCCCCC-cHHHHHhcCcEEEEE
Q 001990 633 MFNNLGEWLCTITGFDS---FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIP-VSAHGT-NPATAAMCGMKIVSV 707 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~---~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~-~~~Hg~-~~~~~~~~G~~v~~v 707 (985)
...++++++++++|.+. ..+++++|++++..++.++. .++++||++ ..+|+. +...+...|++++.+
T Consensus 38 ~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v 109 (366)
T 1m32_A 38 VVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSAL--------GPQDKVLIVSNGAYGARMVEMAGLMGIAHHAY 109 (366)
T ss_dssp THHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSC--------CTTCCEEEEESSHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhc--------CCCCeEEEEeCCCccHHHHHHHHHhCCceEEE
Confidence 46689999999999432 24666777776654444331 356677664 465653 333456789999999
Q ss_pred eCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCCCcE
Q 001990 708 GTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADV 786 (985)
Q Consensus 708 ~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g~Di 786 (985)
+.+.++.+|+++|+++++++ +++++|++++| |++|.+. |+++|+++|+++|+++|+|++|..+...+ ....+++|+
T Consensus 110 ~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~Dea~~~~~~~~-~~~~~~~di 186 (366)
T 1m32_A 110 DCGEVARPDVQAIDAILNAD-PTISHIAMVHSETTTGMLN-PIDEVGALAHRYGKTYIVDAMSSFGGIPM-DIAALHIDY 186 (366)
T ss_dssp ECCTTSCCCHHHHHHHHHHC-TTCCEEEEESEETTTTEEC-CHHHHHHHHHHHTCEEEEECTTTTTTSCC-CTTTTTCSE
T ss_pred eCCCCCCCCHHHHHHHHhcC-CCeEEEEEecccCCcceec-CHHHHHHHHHHcCCEEEEECCccccCcCc-cccccCccE
Confidence 99888889999999999843 35788888887 5789998 89999999999999999999986443322 223467899
Q ss_pred EEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCC-CCC-C--CCCCCCCcccccchhhhHHHHHHHHHHH
Q 001990 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI-PAP-E--KSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 787 ~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~-~~~-~--~~~~t~~i~s~~~g~~~~~~~A~a~l~~ 862 (985)
+++|+||+|+ |++|+|++++++++.+.+.....+...+. ..+ . ...++...+. +...+.++.+.+..
T Consensus 187 ~~~s~~K~~~-----~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~al~~ 257 (366)
T 1m32_A 187 LISSANKCIQ-----GVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTS----PTHTVLAFAQALKE 257 (366)
T ss_dssp EEEESSSTTC-----CCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCC----CHHHHHHHHHHHHH
T ss_pred EEecCccccc-----CCCceEEEEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCC----CHHHHHHHHHHHHH
Confidence 9999999984 34577999999887766543110000000 000 0 0000000011 11222333445555
Q ss_pred hchhh-HHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC
Q 001990 863 MGSKG-LTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP 940 (985)
Q Consensus 863 lg~~g-l~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~p 940 (985)
+...| +.+..++..++++++.+.|++ ++.+..+. .......+.+.++. ..+.+..++.+.|.++||.+......
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~gi~v~~~~~~ 333 (366)
T 1m32_A 258 LAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDD-ELHSPIITAFYSPE---DPQYRFSEFYRRLKEQGFVIYPGKVS 333 (366)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCG-GGBCSSEEEEECCC---CTTCCHHHHHHHHHHTTEECEECCCS
T ss_pred HHHccCHhHHHHHHHHHHHHHHHHHHHCCCeeccCc-hhcCceEEEEEcCc---cCCCCHHHHHHHHHHCCEEEECCcCC
Confidence 55555 677777888899999999987 44432110 00111134455431 01457889999999999987532211
Q ss_pred CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHH
Q 001990 941 VPGTLMIEPTESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 941 v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
.++.+|++++..+|++|++ +++++|+++++
T Consensus 334 ~~~~iRi~~~~~~~~~~i~---~~~~~l~~~~~ 363 (366)
T 1m32_A 334 QSDCFRIGNIGEVYAADIT---ALLTAIRTAMY 363 (366)
T ss_dssp SSCEEEEECCSSCCHHHHH---HHHHHHHHHCT
T ss_pred CCCEEEEecCCCCCHHHHH---HHHHHHHHHHH
Confidence 3578999999999999999 99999988754
No 47
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.88 E-value=8e-21 Score=226.36 Aligned_cols=360 Identities=13% Similarity=0.097 Sum_probs=246.6
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHcCCCc-c--ceecCCCCCCCC-CcHHHHHHHHhCCccccccCCChhhHhhHHH
Q 001990 135 RIDSMKFSKFDEGLTESQMIEHMQKLASMNKV-Y--KSFIGMGYYNTH-VPPVILRNIMENPAWYTQYTPYQAEIAQGRL 210 (985)
Q Consensus 135 ~~~~~~lp~~~~~~se~e~~~~~~~~~~~n~~-~--~~~lG~g~~~~~-~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l 210 (985)
......+| ..++++.+++++++++...+.. + ..|.|..+.... +++.+.+. +. .+...+++++..+++..
T Consensus 65 ~~~~~~lp--~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~p~~~ 138 (514)
T 3mad_A 65 FPSHARLP--RAGLPRAEILAEIAAMGAAESPAWRDGYASGAVYHGDEHHIAFLNEV-YA---LQSQSNPLHPDLWPSTA 138 (514)
T ss_dssp SCCCSSCC--SSCCCHHHHHHHHHHHHHHHHHHHHTTCBSSSCSCCCHHHHHHHHHH-HH---HHTTCCTTCTTTCHHHH
T ss_pred cCccCCCC--CCCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCCCCHHHHHHHH-HH---HHhhcCCcccccChHHH
Confidence 33445677 6889999999999998765532 2 234554443221 33334322 22 12334566666677888
Q ss_pred HHHHHHHHHHHHhhCCCC--cce--eeccchHHHHHHHHHHhhhhc-----CCCCEEEEcCCCChhHHHHHHHhhcCCCe
Q 001990 211 ESLLNFQTMIADLTGLPM--SNA--SLLDEGTAAAEAMAMCNNIQK-----GKKKTFIIASNCHPQTIDICITRADGFDI 281 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~--~~~--sl~~~~ta~~ea~~~a~~~~~-----~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi 281 (985)
+...++++++++++|++. .++ .+++|||.+++.++.+++... .++|+|+++...|+++...++. .|+
T Consensus 139 ~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~~----~G~ 214 (514)
T 3mad_A 139 KFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQY----FGI 214 (514)
T ss_dssp HHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHHH----HTC
T ss_pred HHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHHH----cCC
Confidence 888889999999999984 345 889999999888877654210 0238999999999998888764 377
Q ss_pred EEEEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecccc---------ccC--
Q 001990 282 KVVVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLA---------LTI-- 340 (985)
Q Consensus 282 ~v~~~~~--------~~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~a---------lg~-- 340 (985)
+++.++. ++|++ +++++++|++++| |.+|.+.|+++|+++|+++|++++||. .++ .|.
T Consensus 215 ~v~~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDe-a~~~~~~~~~~~~g~~~ 293 (514)
T 3mad_A 215 KLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDA-CLGGFILPWAERLGYPV 293 (514)
T ss_dssp EEEEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEEC-TTTTTTHHHHHHTTCCC
T ss_pred eeEEeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEec-ccccccchhHHhcCCCC
Confidence 8887754 45666 7889999999998 569999999999999999999999953 222 111
Q ss_pred -CCCCCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCC
Q 001990 341 -LKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATS 418 (985)
Q Consensus 341 -l~~p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~ats 418 (985)
.......|+|++++++ |+++ ||+++|+++++++........... +..+.. .... ...++.
T Consensus 294 ~~~~~~~~g~d~~~~s~~K~l~-----~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~--------~~~gs~ 355 (514)
T 3mad_A 294 PPFDFRLEGVTSVSADTHKYGY-----GAKGTSVILYRRPDLLHYQYFIAA---DWPGGL--YFSP--------TFAGSR 355 (514)
T ss_dssp CCCSTTSTTCCEEEECTTTTTC-----CCSSCEEEEESSHHHHTTTCEEES---SCTTCS--EEES--------SSCSSC
T ss_pred CcccccCCCCcEEEECchhccC-----CCCCeEEEEEeCHHHhcccccccc---ccCCCc--ccCC--------ccCCCC
Confidence 1122567999999998 5543 445678999988766554322110 100110 0100 011222
Q ss_pred CccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecCC--HHHHHHHHHHcC
Q 001990 419 NICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKIE 496 (985)
Q Consensus 419 ni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~--~~~l~~~L~~~G 496 (985)
+. ....++.+++ ..++.+|++++.+++.++++++++.|+++++++++..+.. .+.+..++ ..++.++|.++|
T Consensus 356 ~~---~~~~a~~aal--~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~G 429 (514)
T 3mad_A 356 PG---ALSATAWAAM--LSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLW-VIAVASDELNIYQVMEEMAGRG 429 (514)
T ss_dssp CH---HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCSS-EEEEECSSSCHHHHHHHHHTTT
T ss_pred ch---HHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCeE-EEEEeCCCCCHHHHHHHHHhcC
Confidence 22 1223333333 6677889999999999999999999999844888754422 45555544 789999999999
Q ss_pred ceeeee-cCCeEEEEeccCC-CHHHHHHHHHHHhC
Q 001990 497 MNLRVV-DSNTVTASFDETT-TLEDVDKLFIVFAG 529 (985)
Q Consensus 497 i~~~~~-~~~~lris~~~~~-t~edid~ll~~l~~ 529 (985)
|.+... .++.+|++++..+ +++++++++++|+.
T Consensus 430 i~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~ 464 (514)
T 3mad_A 430 WRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQD 464 (514)
T ss_dssp CBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHH
T ss_pred CEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 988544 3678999999654 56999999999974
No 48
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.88 E-value=3.8e-21 Score=219.75 Aligned_cols=304 Identities=12% Similarity=0.053 Sum_probs=208.7
Q ss_pred HHHHHHHHHHHHHhCCCccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHH----HHhcCcEEEE
Q 001990 632 EMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVS 706 (985)
Q Consensus 632 ~~~~el~~~la~l~G~~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~----~~~~G~~v~~ 706 (985)
+...++++.+++++|.+... +++++|++++..++.+++ ..++++|+++...|..+... ++..|++++.
T Consensus 59 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~-------~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 131 (390)
T 1elu_A 59 QLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLD-------WHQGDEILLTDCEHPGIIAIVQAIAARFGITYRF 131 (390)
T ss_dssp HHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSC-------CCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCC-------CCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEE
Confidence 45778999999999987643 556777776644444331 13678999998877654432 3567999999
Q ss_pred EeCC--CCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHH----HcCCEEEEEccccccccCCCCC
Q 001990 707 VGTD--AKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIH----DNGGQVYMDGANMNAQVGLTSP 779 (985)
Q Consensus 707 v~~~--~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~----~~g~lliVD~a~~~~~~g~~~~ 779 (985)
+|.+ .++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+ ++|+++++|++|..+...+ ..
T Consensus 132 v~~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~-~~ 206 (390)
T 1elu_A 132 FPVAATLNQGDAAAVLANHLG---PKTRLVILSHLLWNTGQVL-PLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPL-DF 206 (390)
T ss_dssp ECCGGGSSSSCHHHHHHTTCC---TTEEEEEEESBCTTTCCBC-CHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCC-CT
T ss_pred EcCCCCCCccchHHHHHHhcC---CCceEEEEeccccCCceec-CHHHHHHHHhhhhhhcCcEEEEEcccccCCcCC-Ch
Confidence 9987 568899999999987 78999999998 5799998 7999999999 9999999999997543322 22
Q ss_pred CcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCC--C-CC---------CCCCCCCCCcccccc
Q 001990 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGG--I-PA---------PEKSQPLGTIAAAPW 847 (985)
Q Consensus 780 g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~--~-~~---------~~~~~~t~~i~s~~~ 847 (985)
..++.|++++|+||++ +||+|+|++++++++.+.+.....|+... . .. +....++.
T Consensus 207 ~~~~~d~~~~s~~K~~-----~~~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 274 (390)
T 1elu_A 207 SRLEVDYYAFTGHKWF-----AGPAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATS------- 274 (390)
T ss_dssp TTSCCSEEEEESSSTT-----CCCTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCC-------
T ss_pred hhcCCCEEEccccccc-----cCCCceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCC-------
Confidence 3567899999999976 35678999999988776664332222100 0 00 00011111
Q ss_pred hhhhHHHHHHHHHHHhchhh-HHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHH
Q 001990 848 GSALILPISYTYIAMMGSKG-LTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 848 g~~~~~~~A~a~l~~lg~~g-l~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~ 926 (985)
+.....++.+.+..+..++ +.+..++..++++++.+.|++..++.+..+.....+.+.++++ .+.+..++.+.
T Consensus 275 -~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 348 (390)
T 1elu_A 275 -AYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATSAPQAGLVSFTVD-----SPLGHRAIVQK 348 (390)
T ss_dssp -CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSSCCSSSEEEEEEC-----SSSCHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCccccccEEEEEcC-----CCCCHHHHHHH
Confidence 1112222334455554445 6777778888999999999873233332210011223445553 14678899999
Q ss_pred HHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHH
Q 001990 927 LMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLS 970 (985)
Q Consensus 927 L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~ 970 (985)
|.++||.+.... .++.+|++++..+|++|++ +++++|++
T Consensus 349 l~~~gi~v~~~~--~~~~iRis~~~~~~~~~i~---~~~~~l~~ 387 (390)
T 1elu_A 349 LEEQRIYLRTIA--DPDCIRACCHYITDEEEIN---HLLARLAD 387 (390)
T ss_dssp HHHTTEECEEET--TTTEEEEECCTTCCHHHHH---HHHHHHTT
T ss_pred HHHCCEEEEecC--CCCeEEEecccCCCHHHHH---HHHHHHHh
Confidence 999999875332 1478999999999999999 99998865
No 49
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.88 E-value=1.4e-21 Score=219.92 Aligned_cols=309 Identities=12% Similarity=0.136 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHHHHHhCCC--cc-ceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcH--HHHHhcCcEE
Q 001990 630 YQEMFNNLGEWLCTITGFD--SF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP--ATAAMCGMKI 704 (985)
Q Consensus 630 ~~~~~~el~~~la~l~G~~--~~-~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~--~~~~~~G~~v 704 (985)
..+...++++++++++|.+ .. .+++++|++++..+ ++.+ .+ ++|++++..|..+. ..++..|+++
T Consensus 31 ~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~---~~~~------~~-d~vl~~~~~~~~~~~~~~~~~~g~~~ 100 (353)
T 2yrr_A 31 VLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAG---LANL------DR-GPVLVLVNGAFSQRVAEMAALHGLDP 100 (353)
T ss_dssp HHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHH---HHTC------SC-CCEEEEECSHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHH---HHHh------cC-CcEEEEcCCCchHHHHHHHHHcCCce
Confidence 3456788999999999985 33 35556677655333 3321 12 67888876554431 2346789999
Q ss_pred EEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCC
Q 001990 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 705 ~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g 783 (985)
+.+|.++++.+|+++|+++++++ ++++|++++| |++|.+. |+++|.++|+++|+++|+|++|..+...+ ....++
T Consensus 101 ~~v~~~~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~~li~D~a~~~~~~~~-~~~~~~ 176 (353)
T 2yrr_A 101 EVLDFPPGEPVDPEAVARALKRR--RYRMVALVHGETSTGVLN-PAEAIGALAKEAGALFFLDAVTTLGMLPF-SMRAMG 176 (353)
T ss_dssp EEEECCTTSCCCHHHHHHHHHHS--CCSEEEEESEETTTTEEC-CHHHHHHHHHHHTCEEEEECTTTTTTSCC-CHHHHT
T ss_pred EEEeCCCCCCCCHHHHHHHHHhC--CCCEEEEEccCCCcceec-CHHHHHHHHHHcCCeEEEEcCcccccccc-cccccC
Confidence 99999888899999999999831 7888999988 5799998 89999999999999999999985332211 123457
Q ss_pred CcEEEeCCcccccccCCCCCCcceeeeecccccCcCCC---CccccCC--CCCCCCCCCCCCCcccccchhhhHHHHHHH
Q 001990 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS---HPVVSTG--GIPAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 784 ~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg---~~~g~~~--~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a 858 (985)
+|++++++||+++ |++|+|++++++++.+.+.. ..+.... .........++.+ ...+.++.+
T Consensus 177 ~d~~~~s~~K~~~-----~~~g~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~a~~~ 243 (353)
T 2yrr_A 177 VDYAFTGSQKCLS-----APPGLAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTP--------VLLHYALLE 243 (353)
T ss_dssp CSEEECCTTSTTC-----CCSSCEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCC--------HHHHHHHHH
T ss_pred ceEEEecCccccc-----CCCceEEEEECHHHHHHhccCCCccccHHHHhhhhhcCCCCCCCC--------HHHHHHHHH
Confidence 8999999999884 44678999999877655531 1000000 0000000111111 112222334
Q ss_pred HHHHhchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC
Q 001990 859 YIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS 938 (985)
Q Consensus 859 ~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~ 938 (985)
.+..+..+|+.+..++..++++++.+.|++. ++...++.......+.+.++ .+.+..++.+.|.++||.+....
T Consensus 244 al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~gi~v~~g~ 317 (353)
T 2yrr_A 244 ALDLVLEEGVAARERRAREVYAWVLEELKAR-GFRPYPKASPLPTVLVVRPP-----EGVDADRLVRALYAEGVAVAGGI 317 (353)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSSBCTTEEEEECC-----TTCCHHHHHHHHHHTTEECEECC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC-CCccccCccCCCeEEEEECC-----CCCCHHHHHHHHHHCCEEEeCCc
Confidence 5555555667777888889999999999872 33222221101112335543 24678899999999999875322
Q ss_pred CC-CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHH
Q 001990 939 WP-VPGTLMIEPTESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 939 ~p-v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
.+ .++.+|++++..+|++|++ ++++++|+++++
T Consensus 318 ~~~~~~~iRi~~~~~~~~~~~~--~~~~~~l~~~l~ 351 (353)
T 2yrr_A 318 GPTRGQVLRLGLMGEGARREAY--QAFLKALDRALA 351 (353)
T ss_dssp GGGTTTCEEEECSGGGSCHHHH--HHHHHHHHHHHH
T ss_pred cccCCCeEEEecCccCCHHHHH--HHHHHHHHHHHh
Confidence 11 2478999998777888775 388888887764
No 50
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.88 E-value=2.4e-21 Score=222.15 Aligned_cols=309 Identities=15% Similarity=0.120 Sum_probs=210.9
Q ss_pred HHHHHHHHHHHHHhCCCcc-c-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcH--HHHHhcCcEEEEE
Q 001990 632 EMFNNLGEWLCTITGFDSF-S-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP--ATAAMCGMKIVSV 707 (985)
Q Consensus 632 ~~~~el~~~la~l~G~~~~-~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~--~~~~~~G~~v~~v 707 (985)
....++++.+++++|.+.. . ++.++|++++..++.++. .++++|++++..|..+. ..++..|++++.+
T Consensus 51 ~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v 122 (396)
T 2ch1_A 51 RTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLL--------EEGDRVLIAVNGIWAERAVEMSERYGADVRTI 122 (396)
T ss_dssp HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--------CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhc--------CCCCeEEEEcCCcccHHHHHHHHHcCCceEEe
Confidence 3467899999999999865 3 466677776654444331 36789999888776653 2457789999999
Q ss_pred eCCCCCCCCHHHHHHHHHhcCC-CeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCCCc
Q 001990 708 GTDAKGNINIEELRKAAEANRD-NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGAD 785 (985)
Q Consensus 708 ~~~~~g~iDle~L~~~i~~~~~-~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g~D 785 (985)
+.+.++.+|+++|+++++ + ++++|++++| |++|.+. |+++|+++|+++|+++|+|+++..+...+ ....+++|
T Consensus 123 ~~~~~~~~d~~~l~~~l~---~~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~~li~Dea~~~g~~~~-~~~~~~~d 197 (396)
T 2ch1_A 123 EGPPDRPFSLETLARAIE---LHQPKCLFLTHGDSSSGLLQ-PLEGVGQICHQHDCLLIVDAVASLCGVPF-YMDKWEID 197 (396)
T ss_dssp ECCTTSCCCHHHHHHHHH---HHCCSEEEEESEETTTTEEC-CCTTHHHHHHHTTCEEEEECTTTBTTBCC-CTTTTTCC
T ss_pred cCCCCCCCCHHHHHHHHH---hCCCCEEEEECCCCCCceec-CHHHHHHHHHHcCCEEEEEccccccCCcc-chhhcCcC
Confidence 998888999999999998 4 7889999998 6799998 79999999999999999999986443222 23456789
Q ss_pred EEEeCCcccccccCCCCCCcceeeeecccccCcCCC------C-ccccC------CCCCCCCCCCCCCCcccccchhhhH
Q 001990 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS------H-PVVST------GGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 786 i~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg------~-~~g~~------~~~~~~~~~~~t~~i~s~~~g~~~~ 852 (985)
+++.++||+++ |++|+|+++++++++..+.. . ..+.+ ..........++.+ ...
T Consensus 198 ~~~~s~~K~~~-----~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 264 (396)
T 2ch1_A 198 AVYTGAQKVLG-----APPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVA--------SNL 264 (396)
T ss_dssp EEECCCC-CCC-----CCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCC--------HHH
T ss_pred EEEEcCCcccc-----CCCCeEEEEECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCc--------HHH
Confidence 99999999984 44678999998765543311 0 11100 00000000111111 112
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCc--eeEEEEEEecCccccCCCCHHHHHHHHHH
Q 001990 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGT--VAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 853 ~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~--~~~~~vv~~~~~~~~~g~~~~~l~~~L~e 929 (985)
..++.+.+..+..+++.+..++..++++++.+.|++ ++.+. .+.+. ....+.+.++ .+.+..++.+.|.+
T Consensus 265 ~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~L~~ 337 (396)
T 2ch1_A 265 IFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIF--VKDPRHRLPTVTGIMIP-----KGVDWWKVSQYAMN 337 (396)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBS--SCSGGGBCTTEEEEECC-----TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCeec--cCCccccCCceEEEEcC-----CCCCHHHHHHHHHH
Confidence 233344555555567777788888999999999987 45442 22110 1112345543 25678899999987
Q ss_pred C-CCccCCCCCC-CCCEEEEec-cCCCCHHhhchHHHHHHHHHHHHHHHH
Q 001990 930 Y-GFHGPTMSWP-VPGTLMIEP-TESESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 930 ~-Gi~~~~~~~p-v~~~lris~-t~~~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
+ ||.+.....+ .++.+|+++ ...++++|++ +++++|+++++++.
T Consensus 338 ~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~---~~~~~l~~~l~~~~ 384 (396)
T 2ch1_A 338 NFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQ---FYLYGFKESLKATH 384 (396)
T ss_dssp HHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHH---HHHHHHHHHHHHHC
T ss_pred hCCEEEecCccccCCCEEEEECCCCcCCHHHHH---HHHHHHHHHHHHhC
Confidence 5 9987543211 257899999 4567899999 99999999987654
No 51
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.88 E-value=2.3e-21 Score=222.31 Aligned_cols=308 Identities=14% Similarity=0.110 Sum_probs=209.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcc--ceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCC--cHHHHHhcCcEEE
Q 001990 630 YQEMFNNLGEWLCTITGFDSF--SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGT--NPATAAMCGMKIV 705 (985)
Q Consensus 630 ~~~~~~el~~~la~l~G~~~~--~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~--~~~~~~~~G~~v~ 705 (985)
..+...++++++++++|.+.. .+++++|++++..++.++. .++++|++++..|.. +...++..|++++
T Consensus 65 ~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~ 136 (393)
T 1vjo_A 65 FLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAV--------EPGDVVLIGVAGYFGNRLVDMAGRYGADVR 136 (393)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC--------CTTCEEEEEESSHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhcc--------CCCCEEEEEcCChhHHHHHHHHHHcCCceE
Confidence 456788999999999999754 4566777776654444331 367899998876655 4455678899999
Q ss_pred EEeCCCCCCCCHHHHHHHHHhcCC-CeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCC
Q 001990 706 SVGTDAKGNINIEELRKAAEANRD-NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 706 ~v~~~~~g~iDle~L~~~i~~~~~-~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g 783 (985)
.+|.++++.+|+++|+++++ + ++++|++++| |++|.+. |+++|.++|+++|+++++|+++..+...+ ....++
T Consensus 137 ~v~~~~~~~~d~~~l~~~l~---~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~~~-~~~~~~ 211 (393)
T 1vjo_A 137 TISKPWGEVFSLEELRTALE---THRPAILALVHAETSTGARQ-PLEGVGELCREFGTLLLVDTVTSLGGVPI-FLDAWG 211 (393)
T ss_dssp EEECCTTCCCCHHHHHHHHH---HHCCSEEEEESEETTTTEEC-CCTTHHHHHHHHTCEEEEECTTTTTTSCC-CTTTTT
T ss_pred EEecCCCCCCCHHHHHHHHh---hCCceEEEEeccCCCcceec-cHHHHHHHHHHcCCEEEEECCccccCcCC-cccccC
Confidence 99998888999999999998 4 7889999998 6899998 89999999999999999999997433222 234567
Q ss_pred CcEEEeCCcccccccCCCCCCcceeeeecccccCcCC-------CCccccCCCCCCCCC-CCCCCCc-ccccchhhhHHH
Q 001990 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP-------SHPVVSTGGIPAPEK-SQPLGTI-AAAPWGSALILP 854 (985)
Q Consensus 784 ~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lp-------g~~~g~~~~~~~~~~-~~~t~~i-~s~~~g~~~~~~ 854 (985)
+|++++|+||+|+.| .|+|++++++++.+.+. +...+.+. +.+. ....... +. +.....
T Consensus 212 ~di~~~s~sK~l~~~-----~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~----~~~~~~ 279 (393)
T 1vjo_A 212 VDLAYSCSQKGLGCS-----PGASPFTMSSRAIEKLQRRRTKVANWYLDMNL---LGKYWGSERVYHHTA----PINLYY 279 (393)
T ss_dssp CSEEECCSSSTTCSC-----SSCEEEEECHHHHHHHHTCSSCCSCSTTCHHH---HHHHHSTTCCCCSCC----CHHHHH
T ss_pred ccEEEEcCcccccCC-----CceEEEEECHHHHHHHhccCCCCCceecCcHh---hhhhhccCCCCCCCC----CHHHHH
Confidence 899999999998532 26899999987654431 11110000 0000 0000000 11 122233
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCc-eeEEEEEEecCccccCCCCHHHHHHHHHHC-C
Q 001990 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGT-VAHEFIVDLRGLKNTAGIEPEDVAKRLMDY-G 931 (985)
Q Consensus 855 ~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~-~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~-G 931 (985)
++.+++..+..+++.+..++..++++++.+.|++ ++.+. .+.+. ..+.+.+.++ .+.+..++.+.|.++ |
T Consensus 280 a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~g 352 (393)
T 1vjo_A 280 ALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLH--VEKEYRLPTLTTVCIP-----DGVDGKAVARRLLNEHN 352 (393)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBS--SCGGGBCSSEEEEECC-----TTCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcCCccc--CCccccCCcEEEEEcC-----CCCCHHHHHHHHHhhCC
Confidence 3445566555556777788888999999999987 44432 22111 1123444443 246788999999987 9
Q ss_pred CccCCCC-CCCCCEEEEecc-CCCCHHhhchHHHHHHHHHHHH
Q 001990 932 FHGPTMS-WPVPGTLMIEPT-ESESKVCHNREDLFFQILLSLT 972 (985)
Q Consensus 932 i~~~~~~-~pv~~~lris~t-~~~t~eeId~~~~~i~aL~~i~ 972 (985)
|.+.... +..++.+|+++. ..+++++++ +++++|++++
T Consensus 353 i~v~~g~~~~~~~~iRis~~~~~~~~~~i~---~~~~~l~~~l 392 (393)
T 1vjo_A 353 IEVGGGLGELAGKVWRVGLMGFNSRKESVD---QLIPALEQVL 392 (393)
T ss_dssp EECEECCGGGTTTEEEEECCGGGCSHHHHH---HHHHHHHHHH
T ss_pred EEEecCccccCCCEEEEeCCccCChHHHHH---HHHHHHHHHh
Confidence 9875322 223589999964 456777899 9999998764
No 52
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.88 E-value=2.3e-21 Score=223.21 Aligned_cols=306 Identities=14% Similarity=0.082 Sum_probs=201.6
Q ss_pred HHHHHHHHHHHHHHHhCCCccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHH----hcCcEE
Q 001990 630 YQEMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA----MCGMKI 704 (985)
Q Consensus 630 ~~~~~~el~~~la~l~G~~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~----~~G~~v 704 (985)
..+...++++++++++|.+... ++.++|++++..++.++. +...++++||++...|..+..... ..|+++
T Consensus 67 ~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~-----~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v 141 (406)
T 3cai_A 67 SAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASS-----SRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKV 141 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTG-----GGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHh-----hccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeE
Confidence 3456788999999999997544 445556655533333221 001367899999988876544332 369999
Q ss_pred EEEeCC-CCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcC
Q 001990 705 VSVGTD-AKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 705 ~~v~~~-~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~ 782 (985)
+.++++ +++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+++|+++++|++|..+...+ ....+
T Consensus 142 ~~v~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~g~~~~-~~~~~ 216 (406)
T 3cai_A 142 KWAEVDIETGELPTWQWESLIS---KSTRLVAVNSASGTLGGVT-DLRAMTKLVHDVGALVVVDHSAAAPYRLL-DIRET 216 (406)
T ss_dssp EEECCCTTTCCCCGGGHHHHCC---TTEEEEEEESBCTTTCBBC-CCHHHHHHHHHTTCEEEEECTTTTTTCCC-CHHHH
T ss_pred EEEecCcccCCcCHHHHHHHhC---CCceEEEEeCCcCCccccC-CHHHHHHHHHHcCCEEEEEcccccCCCCC-Cchhc
Confidence 999998 678899999999997 78999999998 5799998 89999999999999999999996433222 22346
Q ss_pred CCcEEEeCCcccccccCCCCCCcce-eeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHH
Q 001990 783 GADVCHLNLHKTFCIPHGGGGPGMG-PIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 783 g~Di~~~s~hKtl~~p~g~GGPg~G-~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~ 861 (985)
++|++++|+||+++ |++| ++++++++.+.+......+... .......++.+.. .+.++.+.+.
T Consensus 217 ~~d~~~~s~~K~~g-------~~~G~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~t~~~~--------~~~a~~~al~ 280 (406)
T 3cai_A 217 DADVVTVNAHAWGG-------PPIGAMVFRDPSVMNSFGSVSTNPYAT-GPARLEIGVHQFG--------LLAGVVASIE 280 (406)
T ss_dssp CCSEEEEEGGGGTS-------CSCEEEEESCHHHHHTSCCCCSCTTCC-GGGGGCCSCCCHH--------HHHHHHHHHH
T ss_pred CCCEEEeehhhhcC-------CCcCeEEEEehHHHhhcCCcccCCCCC-ccccccCCCccHH--------HHHHHHHHHH
Confidence 79999999999762 4478 9999987765553221000000 0000111222211 1111222333
Q ss_pred Hhchh--------------hHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHH
Q 001990 862 MMGSK--------------GLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL 927 (985)
Q Consensus 862 ~lg~~--------------gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L 927 (985)
.+... .+.+..++..++++++.+.|++...+...++.......+.+.+. +.+..++.+.|
T Consensus 281 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~L 354 (406)
T 3cai_A 281 YLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVH------KVPADRVVQRL 354 (406)
T ss_dssp HHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEET------TBCHHHHHHHH
T ss_pred HHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEEC------CcCHHHHHHHH
Confidence 33221 35666777788899999999873233332221111222445543 35688999999
Q ss_pred HHCCCccCCCC---------CC-CCCEEEEeccCCCCHHhhchHHHHHHHHHH
Q 001990 928 MDYGFHGPTMS---------WP-VPGTLMIEPTESESKVCHNREDLFFQILLS 970 (985)
Q Consensus 928 ~e~Gi~~~~~~---------~p-v~~~lris~t~~~t~eeId~~~~~i~aL~~ 970 (985)
.++||.+.... .+ ..+.+|++++..+|++|++ +++++|++
T Consensus 355 ~~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~---~~~~~l~~ 404 (406)
T 3cai_A 355 ADNGILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVD---QLVRALAS 404 (406)
T ss_dssp HHTTEECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHH---HHHHHHHT
T ss_pred HHCCcEEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHH---HHHHHHHH
Confidence 99999875322 11 1378999999999999999 99998875
No 53
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.88 E-value=3.6e-21 Score=216.77 Aligned_cols=304 Identities=11% Similarity=0.032 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHHHHHhCCCcc-ceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcH--HHHHhcCcEEEE
Q 001990 630 YQEMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP--ATAAMCGMKIVS 706 (985)
Q Consensus 630 ~~~~~~el~~~la~l~G~~~~-~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~--~~~~~~G~~v~~ 706 (985)
..+.+.++++++++++|.+.. .+++++|++++..++.++. .++++|++++..|..+. ..++..|++++.
T Consensus 32 ~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~ 103 (352)
T 1iug_A 32 AREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF--------APGERVLVPVYGKFSERFYEIALEAGLVVER 103 (352)
T ss_dssp HHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC--------CTTCEEEEEECSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhcc--------CCCCeEEEEeCCchhHHHHHHHHHcCCceEE
Confidence 345677899999999999753 4566777776654444331 36789999887665554 223558999999
Q ss_pred EeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHc--CCEEEEEccccccccCCCCCCcCC
Q 001990 707 VGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDN--GGQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 707 v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~--g~lliVD~a~~~~~~g~~~~g~~g 783 (985)
++.++++.+|+++|++ +++++|++++| |++|.+. |+++|.++|+++ |+++|+|++|..+...+ ....++
T Consensus 104 v~~~~~~~~d~~~l~~------~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~-~~~~~~ 175 (352)
T 1iug_A 104 LDYPYGDTPRPEDVAK------EGYAGLLLVHSETSTGALA-DLPALARAFKEKNPEGLVGADMVTSLLVGEV-ALEAMG 175 (352)
T ss_dssp EECCTTCCCCTTTSCC------SSCSEEEEESEETTTTEEC-CHHHHHHHHHHHCTTCEEEEECTTTBTTBCC-CSGGGT
T ss_pred EeCCCCCCCCHHHHhc------cCCcEEEEEEecCCcceec-CHHHHHHHHHhhCCCCEEEEECCccccCcce-eccccC
Confidence 9998888899988865 46788999988 5799998 899999999999 99999999986443222 223457
Q ss_pred CcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCC------CCCCCCCCCCCcccccchhhhHHHHHH
Q 001990 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI------PAPEKSQPLGTIAAAPWGSALILPISY 857 (985)
Q Consensus 784 ~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~------~~~~~~~~t~~i~s~~~g~~~~~~~A~ 857 (985)
+|++++++||+++ |++|+|++++++++.+.+... ++..+. .......++.+ .....++.
T Consensus 176 ~d~~~~s~~K~~~-----~~~g~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~a~~ 240 (352)
T 1iug_A 176 VDAAASGSQKGLM-----CPPGLGFVALSPRALERLKPR--GYYLDLARELKAQKEGESAWTPA--------INLVLAVA 240 (352)
T ss_dssp CSEEEEESSSTTC-----CCSCEEEEEECHHHHHTCCCC--SSTTCHHHHHHHHTTTCCSSCCC--------HHHHHHHH
T ss_pred eeEEEecCccccc-----CCCceeEEEECHHHHHHhhCC--CceeeHHHHHhhcccCCCCCCCC--------HHHHHHHH
Confidence 8999999999874 334789999988765443220 000000 00000111111 11222233
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC
Q 001990 858 TYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 858 a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~ 937 (985)
+.+..+... +.+..++..++++++.+.|++. ++.+..+. ...+.+.+.++ .+.+..++.+.|.++||.+...
T Consensus 241 ~al~~~~~~-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~l~~~gi~v~~~ 312 (352)
T 1iug_A 241 AVLEEVLPR-LEEHLALKAWQNALLYGVGEEG-GLRPVPKR-FSPAVAAFYLP-----EGVPYARVKEAFAQRGAVIAGG 312 (352)
T ss_dssp HHHHHHGGG-HHHHHHHHHHHHHHHHHHHHHT-TCEESCSS-BCTTCEEEECC-----TTCCHHHHHHHHHTTTEECEEC
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC-CCcccccc-cCCeEEEEEcC-----CCCCHHHHHHHHHHCCEEEEeC
Confidence 445554444 6677778888899999999872 33222221 01122345543 1467889999999999987533
Q ss_pred CCC-CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 938 SWP-VPGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 938 ~~p-v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
..+ .++.+|++++..+|++|++ +++++|+++++++
T Consensus 313 ~~~~~~~~iRi~~~~~~~~~~i~---~~~~~l~~~~~~~ 348 (352)
T 1iug_A 313 QGPLKGKVFRLSLMGAYDRYEAL---GVAGMFREVLEEI 348 (352)
T ss_dssp CGGGTTTEEEECCCSSCCHHHHH---HHHHHHHHHHHHH
T ss_pred CCccCCCEEEEEccccCCHHHHH---HHHHHHHHHHHHh
Confidence 222 2478999999999999999 9999999988765
No 54
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.88 E-value=1.2e-20 Score=217.24 Aligned_cols=294 Identities=17% Similarity=0.130 Sum_probs=214.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHh--hhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001990 208 GRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCN--NIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 208 g~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~--~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~ 285 (985)
+..+.+.++++.+|+++|.++.++.+++|+|.+++.++.++ .+. +||+|+++...|+++...+..+++..|++++.
T Consensus 66 ~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~~~~--~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~ 143 (406)
T 3cai_A 66 RSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSSRAG--LGYEVIVSRLDDEANIAPWLRAAHRYGAKVKW 143 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGGGGB--TTCEEEEETTSCGGGTHHHHHHHHHHBCEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhhccC--CCCEEEEcCCccHHHHHHHHHHHHhcCCeEEE
Confidence 34567788999999999998778989999998888777665 233 78999999999999988887655446888888
Q ss_pred eCc---------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCC-CCCcccceEEE
Q 001990 286 SDL---------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVV 353 (985)
Q Consensus 286 ~~~---------~~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~-~p~~~GaDi~v 353 (985)
++. ++|++ +++++++|++.+| |++|.+.|+++|.++|+++|+++++| ...+.|... +..++|+|+++
T Consensus 144 v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-~a~~~g~~~~~~~~~~~d~~~ 222 (406)
T 3cai_A 144 AEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVD-HSAAAPYRLLDIRETDADVVT 222 (406)
T ss_dssp ECCCTTTCCCCGGGHHHHCCTTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEE-CTTTTTTCCCCHHHHCCSEEE
T ss_pred EecCcccCCcCHHHHHHHhCCCceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEE-cccccCCCCCCchhcCCCEEE
Confidence 754 34555 7788999999988 68999999999999999999999995 344555432 22457899999
Q ss_pred ecC-ccccccCCCCCCceE-EEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHH
Q 001990 354 GSA-QRFGVPMGYGGPHAA-FLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMA 431 (985)
Q Consensus 354 ~s~-k~lg~P~~~GGP~~G-~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~a 431 (985)
+|. |.++ |++| ++++++++.+++...... .+. .+..+.+.+|.|. ....++.+
T Consensus 223 ~s~~K~~g-------~~~G~~~~~~~~~~~~l~~~~~~-----~~~----------~~~~~~~~~t~~~---~~~~a~~~ 277 (406)
T 3cai_A 223 VNAHAWGG-------PPIGAMVFRDPSVMNSFGSVSTN-----PYA----------TGPARLEIGVHQF---GLLAGVVA 277 (406)
T ss_dssp EEGGGGTS-------CSCEEEEESCHHHHHTSCCCCSC-----TTC----------CGGGGGCCSCCCH---HHHHHHHH
T ss_pred eehhhhcC-------CCcCeEEEEehHHHhhcCCcccC-----CCC----------CccccccCCCccH---HHHHHHHH
Confidence 998 6432 3367 999999988776432100 000 0112234566665 33434444
Q ss_pred HH-HHHHcCc-----------chHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCC--CcceEEEecCC--HHHHHHHHHHc
Q 001990 432 AM-YAVYHGP-----------EGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP--FFDTVKVKCAD--AHAIASAAYKI 495 (985)
Q Consensus 432 a~-y~~~~g~-----------~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~--~~~~~~i~~~~--~~~l~~~L~~~ 495 (985)
++ ++...|. ++++++.++..++++++.+.|+++.++++..+. ....+.+..++ ..++.+.|.++
T Consensus 278 al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 357 (406)
T 3cai_A 278 SIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHKVPADRVVQRLADN 357 (406)
T ss_dssp HHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSBCSEEEEEETTBCHHHHHHHHHHT
T ss_pred HHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCccccCCEEEEEECCcCHHHHHHHHHHC
Confidence 44 2222221 147889999999999999999998448887432 23346666654 78899999999
Q ss_pred Cceeeeec-------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 496 EMNLRVVD-------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 496 Gi~~~~~~-------------~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
||.++... .+.+|++++.++|++|+++++++|+.
T Consensus 358 gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 358 GILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp TEECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred CcEEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 99876421 37899999999999999999999974
No 55
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.88 E-value=1.8e-20 Score=216.43 Aligned_cols=303 Identities=17% Similarity=0.116 Sum_probs=216.0
Q ss_pred HHHHHHHHHHHHHhhCC-CCcceeeccchHHHHHHHHHHhh---hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001990 210 LESLLNFQTMIADLTGL-PMSNASLLDEGTAAAEAMAMCNN---IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 210 l~~i~e~q~~ia~L~g~-~~~~~sl~~~~ta~~ea~~~a~~---~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~ 285 (985)
.+.+.++++.+|+++|. ++.++.+++|+|.++++++.+++ +. +||+|+++...|++...++...++..|++++.
T Consensus 71 ~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~--~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 148 (420)
T 1t3i_A 71 TDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLK--AGDEIITTVMEHHSNLVPWQMVAAKTGAVLKF 148 (420)
T ss_dssp HHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCC--TTCEEEEETTCCGGGTHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhcccC--CCCEEEECcchhHHHHHHHHHHHHhcCcEEEE
Confidence 35567789999999999 67788899999999988887763 33 78999999999999765555445556888888
Q ss_pred eCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCC-CCCcccceEEEe
Q 001990 286 SDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVG 354 (985)
Q Consensus 286 ~~~--------~~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~-~p~~~GaDi~v~ 354 (985)
++. +++++ +++++++|++++| |.+|.+.|+++|.++|+++|+++++| +..+.|... ...++|+|++++
T Consensus 149 v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-~a~~~~~~~~~~~~~~~di~~~ 227 (420)
T 1t3i_A 149 VQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVD-ACQSAPHYPLDVQLIDCDWLVA 227 (420)
T ss_dssp ECBCTTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEE-CTTTTTTSCCCHHHHTCSEEEE
T ss_pred eccCCCCCcCHHHHHHhhCCCceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEE-hhhccCCccCchhhcCCCEEEE
Confidence 764 45666 7788999999988 68999999999999999999999995 345555442 234678999999
Q ss_pred cCccccccCCCCCCceEEEEEchhhHhcCCCceeeee-ecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHH
Q 001990 355 SAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVS-IDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 355 s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s-~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~ 433 (985)
|.+++. |++|+|++++++++.+.+.....++. .+..... ...+ .....+.+.+|+++ ....++.+++
T Consensus 228 s~sK~~-----~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~---~~~~a~~~al 295 (420)
T 1t3i_A 228 SGHKMC-----APTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFD--HFTT--GELPHKFEAGTPAI---AEAIALGAAV 295 (420)
T ss_dssp EGGGTT-----SCTTCEEEEECHHHHHHSCCCSCSTTSEEEECSS--CEEE--CCTTGGGCCSSCCH---HHHHHHHHHH
T ss_pred ehhhhc-----CCCceEEEEEchHHHhhcCceecCCCcccccccc--ccCC--CCchhhccCCCccH---HHHHHHHHHH
Confidence 983343 33457999999998888754433321 0000000 0011 11122233455554 2333333333
Q ss_pred HHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCC-----CcceEEEecCC--HHHHHHHHHHcCceeeee----
Q 001990 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-----FFDTVKVKCAD--AHAIASAAYKIEMNLRVV---- 502 (985)
Q Consensus 434 y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-----~~~~~~i~~~~--~~~l~~~L~~~Gi~~~~~---- 502 (985)
.++...|++++.++..++++++.+.|+++.|+++.... ...-+.+.+++ ..++.+.|.++||.+...
T Consensus 296 --~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~ 373 (420)
T 1t3i_A 296 --DYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCT 373 (420)
T ss_dssp --HHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTC
T ss_pred --HHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEECCCCHHHHHHHHHHCCeEEeeccccc
Confidence 44444578899999999999999999998338887432 13345555554 778999999999987643
Q ss_pred -------c-CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 503 -------D-SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -------~-~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
. ++.+|++++.+++++|+++++++|..
T Consensus 374 ~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~ 408 (420)
T 1t3i_A 374 QPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQA 408 (420)
T ss_dssp HHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHH
T ss_pred hHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 1 57899999999999999999999974
No 56
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.88 E-value=2.1e-21 Score=222.13 Aligned_cols=316 Identities=13% Similarity=0.033 Sum_probs=204.3
Q ss_pred cHHHHHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHH--HHHhcC--cEE
Q 001990 629 GYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA--TAAMCG--MKI 704 (985)
Q Consensus 629 G~~~~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~--~~~~~G--~~v 704 (985)
.+.++++++++.+++++|.+...+++++|++++.+++ +.+ .++++||+++..|..+.. .++..| .++
T Consensus 32 ~~~~~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~---~~~------~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~ 102 (379)
T 3ke3_A 32 AFQEVMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVA---RQL------TIDEDCLIIRNGWFSYRWTQILEKGKFAKSS 102 (379)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH---HHH------CTTCEEEEEECSHHHHHHHHHHHHHCCSSEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHH---HhC------CCCCeEEEEeCCchhHHHHHHHHHhCCCCce
Confidence 4557888999999999999865566778888775543 222 367899987765533221 234445 588
Q ss_pred EEEeCCCC---------CCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccc
Q 001990 705 VSVGTDAK---------GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMN 771 (985)
Q Consensus 705 ~~v~~~~~---------g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~d---i~eI~~la~~~g~lliVD~a~~~ 771 (985)
+.++.+.+ +.+|++++++++++ +++++|+++++ |.+|.+. | +++|+++||++|+++|+|++|.
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~~~G~~~-~~~~l~~i~~~~~~~~~~li~D~~~~- 178 (379)
T 3ke3_A 103 TVLTAERTEDTEAPKPFAPVDIETAVAKIKE--DKSAIVYAPHVETSSGIIL-SEEYIKALSEAVHSVGGLLVIDCIAS- 178 (379)
T ss_dssp EEEECEESSCCSSCCCEECCCHHHHHHHHHH--HTCSEEEEESEETTTTEEC-CHHHHHHHHHHHHHTTCEEEEECTTC-
T ss_pred EEEeccccccccccCCCCCCCHHHHHHHHhh--cCCcEEEEEeecCCCceeC-CHHHHHHHHHHHHHcCCEEEEEeccc-
Confidence 88887532 36899999999963 36778888775 6789998 7 9999999999999999999985
Q ss_pred cccCCCCCCcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCC-CccccCCCCCCC-----CCCCCCCCcccc
Q 001990 772 AQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS-HPVVSTGGIPAP-----EKSQPLGTIAAA 845 (985)
Q Consensus 772 ~~~g~~~~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg-~~~g~~~~~~~~-----~~~~~t~~i~s~ 845 (985)
+... .....+++|++++++||+|+ |++|+|++++++++.+.+.+ ...+...+...+ ..+.+......+
T Consensus 179 g~~~-~~~~~~~~d~~~~s~~K~l~-----~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t 252 (379)
T 3ke3_A 179 GCVW-LDMKELGIDVLISAPQKGWS-----STPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHAT 252 (379)
T ss_dssp TTCC-CCHHHHTCSEEEECTTTTTC-----SCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSC
T ss_pred CCcc-ccccccCCCEEEecchhhcC-----CCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCC
Confidence 4221 22345689999999999984 34579999999876544321 100000000000 000010000000
Q ss_pred cchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHH
Q 001990 846 PWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVA 924 (985)
Q Consensus 846 ~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~ 924 (985)
+ +...+.+..+.+..+..+|+.+..++..++++++++.|++ ++.+..+. .........+..+ + ......
T Consensus 253 ~--~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~-~~~~~~i~~~~~~------~-~~~~~~ 322 (379)
T 3ke3_A 253 M--PTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIESVAAE-GFEAPGVVVSYTE------R-DDMHKG 322 (379)
T ss_dssp C--CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCT-TCBCSSEEEEECS------C-HHHHSS
T ss_pred C--CHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCc-cccCceEEEEccC------C-cchHHH
Confidence 0 1122223335566666677888888889999999999987 56553221 1111112223221 1 112236
Q ss_pred HHHHHCCCccCCCCC-----CC-CCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHH
Q 001990 925 KRLMDYGFHGPTMSW-----PV-PGTLMIEPTESESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 925 ~~L~e~Gi~~~~~~~-----pv-~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
+.|.++||.+..... |. .+.+||+++.++|++||| +++++|+++++++.
T Consensus 323 ~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~---~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 323 SAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDID---GTVERFEKALDEVL 377 (379)
T ss_dssp HHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHH---HHHHHHHHHHHHHH
T ss_pred HHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHH---HHHHHHHHHHHHhc
Confidence 788999998743221 21 578999999999999999 99999999988764
No 57
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.87 E-value=2.2e-20 Score=220.94 Aligned_cols=356 Identities=11% Similarity=0.003 Sum_probs=226.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCc---cceecCCCCCCCCCcHHHHHHHHhCCcccccc-CCChhh--HhhHHHHHH
Q 001990 140 KFSKFDEGLTESQMIEHMQKLASMNKV---YKSFIGMGYYNTHVPPVILRNIMENPAWYTQY-TPYQAE--IAQGRLESL 213 (985)
Q Consensus 140 ~lp~~~~~~se~e~~~~~~~~~~~n~~---~~~~lG~g~~~~~~p~~v~~~i~~~~~~~t~~-~py~~e--~sqg~l~~i 213 (985)
.+| .++.++.+++++++++...+.. ..+|+|--.-+...|+.+.+.+ +++ ++++.. .+.+..+..
T Consensus 45 ~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-------~~~~n~~~~~~~~~~~~~~le 115 (486)
T 1js3_A 45 TAP--QEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYFPTASSYPAMLADML-------CGAIGCIGFSWAASPACTELE 115 (486)
T ss_dssp SCC--SSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSSCCCCCHHHHHHHHH-------HHHHCCCCSSGGGCHHHHHHH
T ss_pred cCC--CCCCCHHHHHHHHHHHHhcCCCCCCCCCceEeCCCCCCHHHHHHHHH-------HHHhCcCccccccChhHHHHH
Confidence 456 5789999999999997665542 2345553211112334444322 222 344332 344455555
Q ss_pred HHHHHHHHHhhCCCCc---------ceeeccchHHHHHHHHHHhhhhc-C-----CC---------C-EEEEcCCCChhH
Q 001990 214 LNFQTMIADLTGLPMS---------NASLLDEGTAAAEAMAMCNNIQK-G-----KK---------K-TFIIASNCHPQT 268 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~---------~~sl~~~~ta~~ea~~~a~~~~~-~-----~g---------~-~Vlv~~~~h~s~ 268 (985)
.+..+++++++|++.. .+.+++|||.+...++++.+... + .| + .|+++...|+++
T Consensus 116 ~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~ 195 (486)
T 1js3_A 116 TVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSV 195 (486)
T ss_dssp HHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHH
T ss_pred HHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHHH
Confidence 6677899999999863 46789999966655554433110 0 02 2 378899999999
Q ss_pred HHHHHHhhcCCCeEEEEeCc--------hhhhc-cCCCE------eEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEE
Q 001990 269 IDICITRADGFDIKVVVSDL--------KDIDY-KSGDV------CGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMA 332 (985)
Q Consensus 269 ~~~~~~~a~~~gi~v~~~~~--------~~l~~-l~~~t------~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~ 332 (985)
.+.++. .|++++.++. ++|++ +++++ .+|++++| |++|.++|+++|+++||++|++++||
T Consensus 196 ~~~~~~----~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD 271 (486)
T 1js3_A 196 ERAGLI----GGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVD 271 (486)
T ss_dssp HHHHHH----HTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHh----CCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEe
Confidence 888754 4788888765 35555 55444 47888988 68999999999999999999999996
Q ss_pred eccccccCCCCC-------CcccceEEEecC-ccccccCCCCCCceEEEEEchh--hHhcC---CCceeeeeecCCCCcc
Q 001990 333 TDLLALTILKPP-------GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQE--YKRMM---PGRIVGVSIDSSGKPA 399 (985)
Q Consensus 333 a~~~alg~l~~p-------~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~--~~~~l---p~~~vG~s~d~~g~~~ 399 (985)
+ .++.+.+..| +-.++|++++++ |+++.|. ++|+++++++ +.+.+ ++.+.+...+..+...
T Consensus 272 ~-a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~-----~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~ 345 (486)
T 1js3_A 272 A-AYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNF-----DCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITD 345 (486)
T ss_dssp C-TTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCS-----SCEEEEESCHHHHHGGGC------------CCSCCC
T ss_pred h-hhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCc-----ceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCC
Confidence 3 3343333221 124899999998 6666553 4688999764 34554 3333321110000000
Q ss_pred eEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEE
Q 001990 400 LRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVK 479 (985)
Q Consensus 400 ~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~ 479 (985)
+. .. .-+..||. ...++.++ +..+|.+|++++.+++.++++++++.|+++++++++.++.+..+.
T Consensus 346 ~~-~~--~~~~~rr~----------~~~~~~~a--l~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~ 410 (486)
T 1js3_A 346 YR-HW--QLPLGRRF----------RSLKMWFV--FRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVC 410 (486)
T ss_dssp GG-GS--SSCSCCCC----------THHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCCCSSEEE
T ss_pred cc-cc--CCCCCCch----------hHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCceeEEE
Confidence 00 00 00111221 11233333 356688999999999999999999999998449998656566777
Q ss_pred EecCC----HHHHHHHHHHcCcee-ee--ec-CCeEEEEe-ccCCCHHHHHHHHHHHhC
Q 001990 480 VKCAD----AHAIASAAYKIEMNL-RV--VD-SNTVTASF-DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 480 i~~~~----~~~l~~~L~~~Gi~~-~~--~~-~~~lris~-~~~~t~edid~ll~~l~~ 529 (985)
|..++ ..++.++|.++|+.+ .. .. .+.+|+++ +.++|++|++++++.|..
T Consensus 411 f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~ 469 (486)
T 1js3_A 411 FRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRG 469 (486)
T ss_dssp EEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEecChHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 77653 578899998888743 22 12 36899997 456899999999999974
No 58
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.87 E-value=2.3e-19 Score=212.92 Aligned_cols=355 Identities=12% Similarity=0.064 Sum_probs=233.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHHHHH
Q 001990 139 MKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQT 218 (985)
Q Consensus 139 ~~lp~~~~~~se~e~~~~~~~~~~~n~~~~~~lG~g~~~~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e~q~ 218 (985)
..+| ..+.+..++.+.+++....+.. ..+..+.+.++..++.+.+.+.+. +.. ..+.+..+.+..+...++++
T Consensus 30 ~~~p--~~~~~~~~~~~~~~~~i~l~gn-p~~~l~s~~t~~~~~~v~~~l~~~---~~~-~~~~~~~~p~~~~le~~~~~ 102 (502)
T 3hbx_A 30 FKMP--ENSIPKEAAYQIINDELMLDGN-PRLNLASFVTTWMEPECDKLIMSS---INK-NYVDMDEYPVTTELQNRCVN 102 (502)
T ss_dssp SSCC--SSCCCHHHHHHHHHHHGGGSCC-GGGBTTCCSCCCCCHHHHHHHHHT---TTC-BTTCTTTCHHHHHHHHHHHH
T ss_pred CCCC--CCCCCHHHHHHHHHHHhccCCC-CCceeccccCCCCCHHHHHHHHHH---hcc-CCCChhcChhHHHHHHHHHH
Confidence 4566 4678999999999876544321 111123344456677776554432 111 11122344566777888999
Q ss_pred HHHHhhCCC--Ccc---eeeccchHHHHHHHHHHhhhhc-----CCCC-----EEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001990 219 MIADLTGLP--MSN---ASLLDEGTAAAEAMAMCNNIQK-----GKKK-----TFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 219 ~ia~L~g~~--~~~---~sl~~~~ta~~ea~~~a~~~~~-----~~g~-----~Vlv~~~~h~s~~~~~~~~a~~~gi~v 283 (985)
++++++|++ ..+ ..++.|||.++..++++.+..+ .+|+ +|++++..|+++...++. .|+++
T Consensus 103 ~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~----~G~~~ 178 (502)
T 3hbx_A 103 MIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARY----FEVEL 178 (502)
T ss_dssp HHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHH----TTCEE
T ss_pred HHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHH----cCcee
Confidence 999999998 322 3347788877666555543210 0244 899999999998887653 58888
Q ss_pred EEeCc---------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhC------CcEEEEEeccccccC---CCC
Q 001990 284 VVSDL---------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHAN------GVKVVMATDLLALTI---LKP 343 (985)
Q Consensus 284 ~~~~~---------~~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~------galliV~a~~~alg~---l~~ 343 (985)
+.++. ++|++ +++++++|++++| |++|.+.|+++|+++||++ |++++||+ .++.+. +.+
T Consensus 179 ~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~-A~~~~~~p~~~~ 257 (502)
T 3hbx_A 179 KEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDA-ASGGFIAPFLYP 257 (502)
T ss_dssp EEECCBTTBCSCCHHHHHHHCCTTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEEC-TTGGGTHHHHCT
T ss_pred EEEecCCCcCcCCHHHHHHHHhhCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEEC-CccchhhhhhCc
Confidence 88764 34555 7889999999987 6799999999999999999 99999953 233111 111
Q ss_pred C-----CcccceEEEecCccccccCCCCCCceEEEEEch-hhH-hcCCCceeeeeecCCCCcceEEeccccccccccccc
Q 001990 344 P-----GELGADIVVGSAQRFGVPMGYGGPHAAFLATSQ-EYK-RMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKA 416 (985)
Q Consensus 344 p-----~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~-~~~-~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~a 416 (985)
. ...|+|++++++++++ +|++++|++++++ +.+ +.+..+ ..--+...-.+.+ .+
T Consensus 258 ~~~~~~~~~~~D~v~~s~hK~l----~~p~g~G~~~~~~~~~l~~~~~~~-----~~yl~~~~~~~~~----------~~ 318 (502)
T 3hbx_A 258 ELEWDFRLPLVKSINVSGHKYG----LVYAGIGWVIWRNKEDLPEELIFH-----INYLGADQPTFTL----------NF 318 (502)
T ss_dssp TCCCSTTSTTEEEEEEETTTTT----CCCSSCEEEEESSGGGSCGGGCEE-----ECSSSSCEEECCS----------CC
T ss_pred ccccccCCCCceEEEECccccc----CCCCCeEEEEEeCHHHhhHHhccC-----cccccCCCCCccc----------cC
Confidence 1 2358999999995543 2335678888874 332 111000 0000000000000 01
Q ss_pred CCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCC-CCcceEEEecCC-----HHHHHH
Q 001990 417 TSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCAD-----AHAIAS 490 (985)
Q Consensus 417 tsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~i~~~~-----~~~l~~ 490 (985)
+.+. ....++.+++ ..+|.+|++++.++..+++++|+++|+++|+++++.. +..+.+.|..++ ..++.+
T Consensus 319 sr~~---~~~~a~~~al--~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~ 393 (502)
T 3hbx_A 319 SKGS---SQVIAQYYQL--IRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISD 393 (502)
T ss_dssp SCBS---HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSSSSEEEEEESSCSSCCHHHHHH
T ss_pred CchH---HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCCceEEEEEecCCCcCCHHHHHH
Confidence 1111 1223333333 6678899999999999999999999999976999865 566677776542 569999
Q ss_pred HHHHcCceeeee--c-----CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 491 AAYKIEMNLRVV--D-----SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 491 ~L~~~Gi~~~~~--~-----~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+|.++||.++.. + ...+|++++..+|++|+++|+++|..
T Consensus 394 ~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~ 439 (502)
T 3hbx_A 394 MLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEK 439 (502)
T ss_dssp HHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 999999987532 1 25799999999999999999999974
No 59
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.86 E-value=2.9e-21 Score=219.32 Aligned_cols=298 Identities=15% Similarity=0.149 Sum_probs=202.3
Q ss_pred HHHHHHHH-HHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEe--C
Q 001990 633 MFNNLGEW-LCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG--T 709 (985)
Q Consensus 633 ~~~el~~~-la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~--~ 709 (985)
...+++++ +++++|.+ ..++.++|++++..++.++. .++++|+++...|..+...++..|++++.+| .
T Consensus 54 ~~~~l~~~~la~~~~~~-~v~~~~g~t~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~ 124 (371)
T 2e7j_A 54 PIHDFIHNQLPKFLGCD-VARVTNGAREAKFAVMHSLA--------KKDAWVVMDENCHYSSYVAAERAGLNIALVPKTD 124 (371)
T ss_dssp CHHHHHHTHHHHHTTSS-EEEEESSHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCC-EEEEeCChHHHHHHHHHHHh--------CCCCEEEEccCcchHHHHHHHHcCCeEEEeeccc
Confidence 35688999 99999998 44555666666654444331 3678999999888777667888999999999 8
Q ss_pred CCCCCCCHHHHHHHHHhcC--CCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCCCcE
Q 001990 710 DAKGNINIEELRKAAEANR--DNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADV 786 (985)
Q Consensus 710 ~~~g~iDle~L~~~i~~~~--~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g~Di 786 (985)
++++.+|+++|+++++++. +++++|++++| |++|.+. |+++|.++|+++|+++|+|++|..+..++ ....+++|+
T Consensus 125 ~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~-~~~~i~~~~~~~~~~li~D~a~~~~~~~~-~~~~~~~di 202 (371)
T 2e7j_A 125 YPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLP-DVKKIAKVCSEYDVPLLVNGAYAIGRMPV-SLKEIGADF 202 (371)
T ss_dssp TTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCC-CHHHHHHHHHTTTCCEEEECTTTBTTBCC-CHHHHTCSE
T ss_pred CCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccC-CHHHHHHHHHHcCCeEEEECccccCCCCC-ChhhcCCCE
Confidence 7778999999999997532 47899999998 5799998 89999999999999999999986543221 233467899
Q ss_pred EEeCCcccccccCCCCCCcceeeeecccccCc-CCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhch
Q 001990 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPF-LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 787 ~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~-lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~ 865 (985)
+++|+||+|+ +|+++|++++++++.+. +.....+...+ ...+.++++. ..+.++.+.+..+..
T Consensus 203 ~~~s~sK~~~-----~~~~~G~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--------~~~~a~~~~l~~~~~ 266 (371)
T 2e7j_A 203 IVGSGHKSMA-----ASGPIGVMGMKEEWAEIVLRRSEKYKNKE---VELLGCTARG--------ATIITLMASFPHVRE 266 (371)
T ss_dssp EEEEHHHHSS-----CCSSCEEEEECTTTTTTTTCBCSSCTTSB---GGGTTCCCCS--------HHHHHHHHHHHHHHH
T ss_pred EEecCCcCCC-----CCCCcEEEEEechhhhhhccccccCcccc---cccccCCcCH--------HHHHHHHHHHHHHHH
Confidence 9999999985 23478999999887665 54221110000 0000111111 112222233333322
Q ss_pred hhHHHHHHHH--HHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCC-
Q 001990 866 KGLTEASKIA--ILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPV- 941 (985)
Q Consensus 866 ~gl~~~~~~~--~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~pv- 941 (985)
+..++. .++++++.+.|++ ++.+. ++.....+.+.++++ +..++.+.|.++||.+....+..
T Consensus 267 ----~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~~~~~~~~~~~~--------~~~~~~~~l~~~gi~~~~~~~~~~ 332 (371)
T 2e7j_A 267 ----RIKRWDEEVEKARRFAAEMEKLGIKQL--GDNPHNHDLMFFHAE--------VLYEISKKAKGGRFFLYRELKSRK 332 (371)
T ss_dssp ----HGGGHHHHHHHHHHHHHHHHHTTCEEE--SSSSCCSSEEEEECH--------HHHHHHHHSSSGGGHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHcCcEEe--cCCCccCceEEEECC--------CHHHHHHHHHHCCEEEEecccccc
Confidence 334455 6778899999987 34332 221101222344431 46788899988899864311111
Q ss_pred -----CCEEE-EeccCC-CCHHhhchHHHHHHHHHHHHHH
Q 001990 942 -----PGTLM-IEPTES-ESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 942 -----~~~lr-is~t~~-~t~eeId~~~~~i~aL~~i~~~ 974 (985)
++.+| ++++.. +|++|++ +++++|++++++
T Consensus 333 ~~g~~~~~iRii~~~~~~~~~~~i~---~~~~~l~~~~~~ 369 (371)
T 2e7j_A 333 IHGIKPGLTRYFKLSTYGLSDEEVD---YVLNAFKEIIEK 369 (371)
T ss_dssp EECSCTTCCSEEEEECTTCCHHHHH---HHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEeeccCCCHHHHH---HHHHHHHHHHHh
Confidence 47899 999988 8999999 999999988764
No 60
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.86 E-value=6.6e-20 Score=207.04 Aligned_cols=364 Identities=13% Similarity=0.121 Sum_probs=234.7
Q ss_pred CCccccccCCHHHHHHHHHHHhcCccCcCcccccccceecccCccccccc---ccccccc---------ccCCCCcchhh
Q 001990 560 THPVFNKYHTEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMP---VTWPSFA---------NIHPFAPADQA 627 (985)
Q Consensus 560 ~~pv~~~~~se~e~~~~l~~l~~~~~~~~~~~~~lGs~~~~~~~~~~~~~---~~~~~f~---------~~~p~~p~e~~ 627 (985)
.+| +.|++|.++.-.+.+++..|..-..+-+ |.| .....+. +.+.+|. +..--|| -.
T Consensus 40 ~~P--~~g~~d~~ie~~l~~la~mdsnn~~~~~--g~G-----ERE~Rv~s~lv~rrh~~~~HGiGRSGd~~~~QP--KA 108 (501)
T 3hl2_A 40 KCP--ENGWDESTLELFLHELAIMDSNNFLGNC--GVG-----EREGRVASALVARRHYRFIHGIGRSGDISAVQP--KA 108 (501)
T ss_dssp CCC--SSCCCHHHHHHHHHHHHTTBGGGCSSCC--CCS-----SCCCCCSCHHHHHHTTTCCSCBSCSSCTTCCCT--TB
T ss_pred CCC--ccCCCHHHHHHHHHHHHhhccCCCcccC--Ccc-----cchHHHHHHHHHhhccCcccCCCCccccccCCC--Cc
Confidence 357 6899999999999999999853211112 222 1111111 1111211 2344555 23
Q ss_pred hcHHHH---HHH-HHHHHHHHhCCCcc--ceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcC
Q 001990 628 QGYQEM---FNN-LGEWLCTITGFDSF--SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCG 701 (985)
Q Consensus 628 ~G~~~~---~~e-l~~~la~l~G~~~~--~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G 701 (985)
.|..-+ -+. +..||+++ |++.. .|.+++++.++.++++++.. . +..++++||+|+++|.+..+++.+.|
T Consensus 109 aGssll~~ltn~l~ld~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r---~-~rpg~d~VIvpRn~HKSv~kAliL~G 183 (501)
T 3hl2_A 109 AGSSLLNKITNSLVLDIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLR---H-KRPKAKYIIWPRIDQKSCFKSMITAG 183 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHH---H-HCTTCCEEEEECCCCHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcC---c-ccCCCCEEEEecchHHHHHHHHHHcC
Confidence 343222 112 24566666 99874 46667666667666665432 1 11124899999999999999999999
Q ss_pred cEEEEEeC---CCCCCCCHHHHHHHHHhcCCCeEEEEEEcCC-Ccc-ccccCHHHHHHHHHHcCCEEEEEccccccccCC
Q 001990 702 MKIVSVGT---DAKGNINIEELRKAAEANRDNLSTLMVTYPS-THG-VYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL 776 (985)
Q Consensus 702 ~~v~~v~~---~~~g~iDle~L~~~i~~~~~~t~~Vvi~~pn-~~G-~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~ 776 (985)
++++++++ ++...+|+++++++|++++.+..++++++|+ +.| +++ ||++|+++||+||++++||+||..-+...
T Consensus 184 l~Pv~V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~d-dI~eIaeIch~~gIpllVDeAhGah~~~~ 262 (501)
T 3hl2_A 184 FEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPD-RLEELAVICANYDIPHIVNNAYGVQSSKC 262 (501)
T ss_dssp CEEEEECEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCC-CHHHHHHHHHHHTCCEEEECTTCTTCHHH
T ss_pred CeEEEEeeeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccc-cHHHHHHHHHHcCCeEEEeCcchhhhhhh
Confidence 99999987 3347899999999999875344444545544 433 556 99999999999999999999985322111
Q ss_pred CC-C---CcCC-CcEEEeCCcccccccCCCCCCcceeeeecc-cccCcC----CCCccccCCCCCCCCCCCCCCCccccc
Q 001990 777 TS-P---GYIG-ADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFL----PSHPVVSTGGIPAPEKSQPLGTIAAAP 846 (985)
Q Consensus 777 ~~-~---g~~g-~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~-~l~~~l----pg~~~g~~~~~~~~~~~~~t~~i~s~~ 846 (985)
.. | -..| +|+++.|.||++..|.| +|++++++ ++.+.+ ||+ .++
T Consensus 263 ~~lp~sA~~~GrAD~vVqS~HK~llvpIG-----G~ii~~~d~e~l~~~~~~yPGr-------------------~S~-- 316 (501)
T 3hl2_A 263 MHLIQQGARVGRIDAFVQSLDKNFMVPVG-----GAIIAGFNDSFIQEISKMYPGR-------------------ASA-- 316 (501)
T ss_dssp HHHHHHHHHHSCCCEEEEEHHHHHCCCSS-----CEEEEESCHHHHHHHHHTSCSC-------------------BCS--
T ss_pred hhhHHHHHhcCCCcEEEecccccceeecC-----ceEEEeCCHHHHHHHHHhCCCC-------------------CCC--
Confidence 10 1 1347 99999999999987754 23454553 333322 211 011
Q ss_pred chhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-----cCCeeEcCCCCceeEEEEEEecCccccCCCCHH
Q 001990 847 WGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-----HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPE 921 (985)
Q Consensus 847 ~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-----~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~ 921 (985)
......|+.+..+|.+|+++..++.+++++||+++|++ +-.++ ..+.++. .+.+.+..+....+....
T Consensus 317 ----Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll-~~~~n~i--s~a~tl~~~~~~~~~~~t 389 (501)
T 3hl2_A 317 ----SPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLL-HTPHNPI--SLAMTLKTLDEHRDKAVT 389 (501)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBC-CCTTCSS--EEEEECTTSCTTTSCHHH
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhc-CCCCCce--eEEEecccccccccccHH
Confidence 12344688999999999999999999999999999986 12332 2222333 245555433222223456
Q ss_pred HHHHHHHHCCCccCC-----C----------C-------CCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHHH
Q 001990 922 DVAKRLMDYGFHGPT-----M----------S-------WPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTTF 977 (985)
Q Consensus 922 ~l~~~L~e~Gi~~~~-----~----------~-------~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~~ 977 (985)
.+...|..+++-... - . +| -..+.+......+++||| .|++.|.+++.+.++
T Consensus 390 ~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~-~~yl~~a~aiG~~~~~v~---~~~~~l~~~~~~~~~ 463 (501)
T 3hl2_A 390 QLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYP-CAYLNAASAIGMKMQDVD---LFIKRLDRCLKAVRK 463 (501)
T ss_dssp HHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCS-SCEEEEECCTTCCHHHHH---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCCC-chHHHHHHHcCCCHHHHH---HHHHHHHHHHHHHHH
Confidence 788888888775211 0 0 12 257888888899999999 999999999987654
No 61
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.86 E-value=2.2e-20 Score=212.19 Aligned_cols=315 Identities=11% Similarity=0.054 Sum_probs=218.2
Q ss_pred CCcHHHHHHHHhCCcccccc--CCCh----hhHhhHHHHHHHHHHHHHHHhhCCCC-cceee-ccchHHHHHHHHHHhhh
Q 001990 179 HVPPVILRNIMENPAWYTQY--TPYQ----AEIAQGRLESLLNFQTMIADLTGLPM-SNASL-LDEGTAAAEAMAMCNNI 250 (985)
Q Consensus 179 ~~p~~v~~~i~~~~~~~t~~--~py~----~e~sqg~l~~i~e~q~~ia~L~g~~~-~~~sl-~~~~ta~~ea~~~a~~~ 250 (985)
.+|+.|.+++.. +++.| +|-. ...++...+.+.++++.+++|+|++. ..+.+ +.|+|.++++++..+..
T Consensus 23 ~~p~~Vl~a~~~---~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~ 99 (377)
T 3e77_A 23 MLPHSVLLEIQK---ELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIG 99 (377)
T ss_dssp CCCHHHHHHHHH---TSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGG
T ss_pred CCCHHHHHHHHH---HHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccC
Confidence 488888766654 23222 1111 11244567889999999999999975 35666 37899888887766532
Q ss_pred hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCCCEeEEEEEc-CCCCeeeccHHHHHH
Q 001990 251 QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSGDVCGVLVQY-PGTEGEVLDYGDFIK 320 (985)
Q Consensus 251 ~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~--------~~l~~-l~~~t~~V~v~~-pn~~G~i~dl~~I~~ 320 (985)
.++||+|++....|-+. .|...++..|+++++++. ++++. ++++|++|++++ .|.+|++.|+
T Consensus 100 -~~~Gd~v~~~~~g~~~~--~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pi----- 171 (377)
T 3e77_A 100 -LKAGRCADYVVTGAWSA--KAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDF----- 171 (377)
T ss_dssp -GSTTCEEEECCCSHHHH--HHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCCCTTCSCEEEESEETTTTEECSS-----
T ss_pred -CCCCCeEEEEECCHHHH--HHHHHHHHhCCceEEeccCCCcCCCCChHHhccCCCccEEEEeCccCchheEchh-----
Confidence 12489998888777654 455567788988887653 34444 788999998876 4789999999
Q ss_pred HHHhCCcEEEEEeccccccCCC-CCCcccceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcc
Q 001990 321 NAHANGVKVVMATDLLALTILK-PPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPA 399 (985)
Q Consensus 321 ~a~~~galliV~a~~~alg~l~-~p~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~ 399 (985)
+++++|++++||+ ..++|.++ +..+|| ++++++|++.+| ||+|++++++++++.+++...+
T Consensus 172 i~~~~~~~~~vD~-~q~~g~~~id~~~~~--~~~~s~~K~~gp-----~G~g~l~~~~~~l~~~~~~~p~---------- 233 (377)
T 3e77_A 172 IPDVKGAVLVCDM-SSNFLSKPVDVSKFG--VIFAGAQKNVGS-----AGVTVVIVRDDLLGFALRECPS---------- 233 (377)
T ss_dssp CCCCTTCCEEEEC-TTTTTSSCCCGGGCS--EEEEEGGGTTSC-----TTCEEEEEETTSCSCCCTTSCG----------
T ss_pred hhccCCCEEEEEc-ccccCCCCCchhhcC--EEEEecccccCC-----CccEEEEEcHHHHhhccCCCCc----------
Confidence 4678999999954 34666543 446677 467888544235 5789999999988777543211
Q ss_pred eEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHHHHHHHhcCCCEEEcC-C--CCc
Q 001990 400 LRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKLGTVEVQG-L--PFF 475 (985)
Q Consensus 400 ~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~--~~~ 475 (985)
| +++....+ ..+..+|+|+ .+++++.+++ .++..+ |++++.+|..+++++++++|++++|+.+.. . ...
T Consensus 234 ~-~~~~~~~~-~~~~~~Tp~v---~~i~~l~~al--~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs 306 (377)
T 3e77_A 234 V-LEYKVQAG-NSSLYNTPPC---FSIYVMGLVL--EWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRS 306 (377)
T ss_dssp G-GCHHHHHT-TTTCSSCCCH---HHHHHHHHHH--HHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBC
T ss_pred h-hhHHHHhh-cCCCCCCchH---HHHHHHHHHH--HHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcC
Confidence 1 11111101 1123467777 6778888887 566667 899999999999999999999984487642 2 123
Q ss_pred c-eEEEecCC--H-----HHHHHHHHHcCceeeee--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 476 D-TVKVKCAD--A-----HAIASAAYKIEMNLRVV--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 476 ~-~~~i~~~~--~-----~~l~~~L~~~Gi~~~~~--~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
. .++|++++ + ..+.+.|.++||.++.- ..+.+|+|+..++|++|||+|+++|+.
T Consensus 307 ~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~ 370 (377)
T 3e77_A 307 KMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKK 370 (377)
T ss_dssp SSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3 36777664 1 35677777899987542 236799999999999999999999974
No 62
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.86 E-value=6.3e-20 Score=211.68 Aligned_cols=331 Identities=13% Similarity=0.105 Sum_probs=222.5
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHHHHHHHHHhhCCCCccee-eccchHHHHHHHHHHhh
Q 001990 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNAS-LLDEGTAAAEAMAMCNN 249 (985)
Q Consensus 171 lG~g~~~~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g~~~~~~s-l~~~~ta~~ea~~~a~~ 249 (985)
++.| |..+|+.+.+. +.+..+ ..|.+. ..+...++++++++++|.+..++. +..++|.++++++.++
T Consensus 15 ~~p~--p~~~~~~v~~a-~~~~~~----~~~~~~----~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l- 82 (416)
T 3isl_A 15 MTPG--PVEVDPRVLRV-MSTPVV----GQFDPA----FTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASV- 82 (416)
T ss_dssp CSSS--SCCCCHHHHHH-TTSCCC----CTTSHH----HHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHH-
T ss_pred ecCC--CcCcCHHHHHH-hcccCC----CCccHH----HHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHh-
Confidence 4555 55677777644 433221 222222 246677889999999999877655 6678888888877665
Q ss_pred hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cC-CCEeEEEEEcC-CCCeeeccHHHH
Q 001990 250 IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KS-GDVCGVLVQYP-GTEGEVLDYGDF 318 (985)
Q Consensus 250 ~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~--------~~l~~-l~-~~t~~V~v~~p-n~~G~i~dl~~I 318 (985)
+. +||+|++++..|+++. +...++..|++++.++. +++++ ++ +++++|++.+| |++|.+.|+++|
T Consensus 83 ~~--~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i 158 (416)
T 3isl_A 83 IE--PEDDVLIPIYGRFGYL--LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAI 158 (416)
T ss_dssp CC--TTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHH
T ss_pred cC--CCCEEEEecCCcccHH--HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHH
Confidence 33 8899999999998732 22223456888888754 34555 65 58899999987 789999999999
Q ss_pred HHHHHhCCcEEEEEeccccccCCC-CCCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCc---eeeeeec
Q 001990 319 IKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGR---IVGVSID 393 (985)
Q Consensus 319 ~~~a~~~galliV~a~~~alg~l~-~p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~---~vG~s~d 393 (985)
.++|+++|+++++| ..++.+.+. +..++|+|++++++ |++++ ++++|++++++++++.+... .+||...
T Consensus 159 ~~l~~~~~~~li~D-~a~~~~~~~~~~~~~~~d~~~~s~~K~l~g-----~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~ 232 (416)
T 3isl_A 159 GEACRTEDALFIVD-AVATIGGCEVKVDEWKIDAAIGGTQKCLSV-----PSGMAPITYNERVADVIAARKKVERGIATQ 232 (416)
T ss_dssp HHHHHHTTCEEEEE-CTTTTTTSCCCTTTTTCSEEECCSSSTTCC-----CSSEEEEEECHHHHHHHHTC----------
T ss_pred HHHHHHcCCEEEEE-CCccccCCCcchhhcCCCEEEecCccccCC-----CCCeEEEEECHHHHHHhhcccccccccccc
Confidence 99999999999995 345555443 34568999999998 66653 35689999999888776432 2454211
Q ss_pred CC------C--CcceEEeccc-c--cccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHh
Q 001990 394 SS------G--KPALRVAMQT-R--EQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLK 462 (985)
Q Consensus 394 ~~------g--~~~~~l~l~t-r--e~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~ 462 (985)
.. | ...+.++... + .+..+.+.+|.|+ ....++.+++ ..+...|++++.++..++++++.+.|+
T Consensus 233 ~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~al--~~~~~~g~~~~~~~~~~~~~~l~~~L~ 307 (416)
T 3isl_A 233 ADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEAT---TMLYALREGV--RLVLEEGLETRFERHRHHEAALAAGIK 307 (416)
T ss_dssp --------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCH---HHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 0011111100 0 0112233455554 3444444444 445556799999999999999999999
Q ss_pred cCCCEEEcCCC--C-cceEEEecC-C--HHHHHHHHHHc-Cceeee----ecCCeEEEEeccCCCHHH-HHHHHHHHhC
Q 001990 463 KLGTVEVQGLP--F-FDTVKVKCA-D--AHAIASAAYKI-EMNLRV----VDSNTVTASFDETTTLED-VDKLFIVFAG 529 (985)
Q Consensus 463 ~~g~~~~~~~~--~-~~~~~i~~~-~--~~~l~~~L~~~-Gi~~~~----~~~~~lris~~~~~t~ed-id~ll~~l~~ 529 (985)
++| +++.... . ...+.+..+ + ..++.+.|.++ ||.++. ..++.+|++++.+++.+| +++++++|+.
T Consensus 308 ~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~ 385 (416)
T 3isl_A 308 AMG-LRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEA 385 (416)
T ss_dssp HTT-CCBCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred HcC-CEeccCccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHH
Confidence 986 8876432 1 234556664 2 88999999887 998864 235789999988877777 9999999974
No 63
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.86 E-value=4.3e-20 Score=214.77 Aligned_cols=298 Identities=12% Similarity=0.050 Sum_probs=206.8
Q ss_pred hcHHHHHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEE
Q 001990 628 QGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSV 707 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v 707 (985)
.|..+...++++.+++++|.+. .+++++|+++++.++.+ +. .++++|+++...|+++...+...|.+++.+
T Consensus 105 ~G~~~~~~~l~~~la~~~g~~~-~i~~~sGs~a~~~al~~---l~-----~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~ 175 (427)
T 2w8t_A 105 NGTFHDHMEVEQALRDFYGTTG-AIVFSTGYMANLGIIST---LA-----GKGEYVILDADSHASIYDGCQQGNAEIVRF 175 (427)
T ss_dssp TCCCHHHHHHHHHHHHHHTCSE-EEEESCHHHHHHHHHHH---HS-----CTTCEEEEETTCCHHHHHHHHHSCSEEEEE
T ss_pred cCCcHHHHHHHHHHHHHhCCCc-eEEecCcHHHHHHHHHH---hc-----CCCCEEEECCcccHHHHHHHHHcCCeeEEe
Confidence 3444567889999999999874 46778888766544333 21 367899999998888777788899999988
Q ss_pred eCCCCCCCCHHHHHHHHHhcCC-CeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CC-----C
Q 001990 708 GTDAKGNINIEELRKAAEANRD-NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TS-----P 779 (985)
Q Consensus 708 ~~~~~g~iDle~L~~~i~~~~~-~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~-~~-----~ 779 (985)
+. +|+++|+++++++.+ ++++|+++++ |++|.+. |+++|+++|+++|+++|+|++|..+..+. .. .
T Consensus 176 ~~-----~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~-~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~ 249 (427)
T 2w8t_A 176 RH-----NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIA-PLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQ 249 (427)
T ss_dssp CT-----TCHHHHHHHHHTSCSSSCEEEEEESEETTTTEEC-CHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHT
T ss_pred CC-----CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCcc-CHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhc
Confidence 85 599999999985433 7899999887 5799998 89999999999999999999986433220 00 1
Q ss_pred C-cCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHH
Q 001990 780 G-YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 780 g-~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a 858 (985)
+ ..++|+++.++||+|+ .|| |++++++++++.+......+ .. +.. . ++..++++.+
T Consensus 250 ~~~~~~di~~~s~sK~~g------~~g-G~v~~~~~l~~~l~~~~~~~---------~~-~~~--~----~~~~~aa~~~ 306 (427)
T 2w8t_A 250 GLEGQIDFVVGTFSKSVG------TVG-GFVVSNHPKFEAVRLACRPY---------IF-TAS--L----PPSVVATATT 306 (427)
T ss_dssp TCTTCCSEEEEESSSTTC------SCC-EEEEECCTTGGGGGGTCHHH---------HS-SCC--C----CHHHHHHHHH
T ss_pred CCCcCCcEEEecchhhhc------cCC-CEEEeCHHHHHHHHHhcccc---------cc-cCC--C----CHHHHHHHHH
Confidence 1 2357999999999984 344 89999988776653210000 00 000 1 1222333345
Q ss_pred HHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC
Q 001990 859 YIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 859 ~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~ 937 (985)
.+..+.. +.+..++..++++++++.|++ ++.+...+..+. .+.+.+.. +.+..++.+.|.++||.+...
T Consensus 307 al~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~---~~~~~~~~-----~~~~~~l~~~L~~~Gi~v~~~ 376 (427)
T 2w8t_A 307 SIRKLMT--AHEKRERLWSNARALHGGLKAMGFRLGTETCDSA---IVAVMLED-----QEQAAMMWQALLDGGLYVNMA 376 (427)
T ss_dssp HHHHHTS--CHHHHHHHHHHHHHHHHHHHHHTCEESCSSCCSS---EEEEEESS-----HHHHHHHHHHHHHTTEECEEE
T ss_pred HHHHHhc--CHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCC---EEEEEECC-----HHHHHHHHHHHHHCCeEEeee
Confidence 5555432 345666778889999999987 444321210122 24455431 234678999999999987543
Q ss_pred CCC-C---CCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHH
Q 001990 938 SWP-V---PGTLMIEPTESESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 938 ~~p-v---~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
.+| + .+.+|++++..+|++|++ +++++|+++++++.
T Consensus 377 ~~~~~~~~~~~lRi~~~~~~t~e~i~---~~~~~l~~~l~~~~ 416 (427)
T 2w8t_A 377 RPPATPAGTFLLRCSICAEHTPAQIQ---TVLGMFQAAGRAVG 416 (427)
T ss_dssp CTTTSCTTCEEEEEECCTTCCHHHHH---HHHHHHHHHHHHHT
T ss_pred CCCCCCCCCeEEEEEeCCCCCHHHHH---HHHHHHHHHHHHhC
Confidence 332 1 258999999999999999 99999999887654
No 64
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.85 E-value=3e-20 Score=219.46 Aligned_cols=313 Identities=15% Similarity=0.127 Sum_probs=204.3
Q ss_pred hcHHHHHHHHHHHHHHHhCCCc----cceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHH-------
Q 001990 628 QGYQEMFNNLGEWLCTITGFDS----FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT------- 696 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~~~----~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~------- 696 (985)
++..++..++++++++++|.+. +++++++|++++++++.++. .++|+||+++..|+.+...
T Consensus 86 ~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all--------~pGD~Vl~~~~~~~~~~~~~~~~~~~ 157 (483)
T 1rv3_A 86 EHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALV--------EPHGRIMGLDLPDGGHLTHGFMTDKK 157 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHT--------CTTCEEEEECGGGTCCGGGCCBCSSC
T ss_pred hhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHhc--------CCCCEEEEecCccCcCcchhhhhccc
Confidence 3455667778899999999985 34788888876655444432 4789999999888876431
Q ss_pred -HHhcC--cEEEEEeCC-CCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccc
Q 001990 697 -AAMCG--MKIVSVGTD-AKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMN 771 (985)
Q Consensus 697 -~~~~G--~~v~~v~~~-~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~ 771 (985)
+...| ++++.++++ +++.+|+++|++++++ +++++|++ ++ |+. .+. |+++|+++|+++|+++++|++|..
T Consensus 158 ~v~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~--~~tklIi~-~~sn~~-~~~-dl~~i~~ia~~~g~~livD~ah~~ 232 (483)
T 1rv3_A 158 KISATSIFFESMAYKVNPDTGYIDYDRLEENARL--FHPKLIIA-GTSCYS-RNL-DYGRLRKIADENGAYLMADMAHIS 232 (483)
T ss_dssp BCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH--HCCSEEEE-CCSSCC-SCC-CHHHHHHHHHHTTCEEEEECTTTH
T ss_pred CcccccceEEEEECccccCCCcCCHHHHHHHHhh--cCCcEEEE-eCCcCC-CcC-CHHHHHHHHHHcCCEEEEEccchh
Confidence 22334 566666556 5689999999999974 46788888 65 445 666 899999999999999999999865
Q ss_pred cccCC---CCCCcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCC-CCCCCCCC-CCCCccccc
Q 001990 772 AQVGL---TSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGG-IPAPEKSQ-PLGTIAAAP 846 (985)
Q Consensus 772 ~~~g~---~~~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~-~~~~~~~~-~t~~i~s~~ 846 (985)
++... ..|- .++|++++|+||+| +||++|++++++++.. +. ...|.... ........ ..+...+++
T Consensus 233 g~~~~~~~~~p~-~~~div~~s~~K~l------~GprgG~i~~~~~~~~-~~-~~~g~~~~y~~~~~~~~~~~~~~~g~~ 303 (483)
T 1rv3_A 233 GLVVAGVVPSPF-EHCHVVTTTTHKTL------RGCRAGMIFYRRGVRS-VD-PKTGKEILYNLESLINSAVFPGLQGGP 303 (483)
T ss_dssp HHHHHTSSCCGG-GTCSEEEEESSGGG------CCCSCEEEEEECSBCC---------CCBCCHHHHHHHHHTTTTCCSC
T ss_pred cccccCCCCCCC-CCCcEEEecCcccC------CCCCceEEEEcchhhh-hc-cccCcchhhHHHHHhhhhcCCcccCCc
Confidence 44221 1111 16899999999998 4676799999976542 21 00000000 00000000 000001111
Q ss_pred chhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHH
Q 001990 847 WGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAK 925 (985)
Q Consensus 847 ~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~ 925 (985)
....+++..+.+..+..+++.+..++..++++++.+.|.+ ++.+..++. + .+.+.++++. .+.+..++.+
T Consensus 304 --~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~--~~~~~v~~~~----~g~~~~~~~~ 374 (483)
T 1rv3_A 304 --HNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVELGYKIVTGGS-D--NHLILVDLRS----KGTDGGRAEK 374 (483)
T ss_dssp --CHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC-S--SSEEEEEGGG----GTCCHHHHHH
T ss_pred --cHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcCCEeccCCC-C--CceEEEeccC----CCCCHHHHHH
Confidence 0111122223455555567888888899999999999987 555432221 1 2235677652 2567888999
Q ss_pred HHHHCCCccC----CCC-CC-CCCEEEEeccCCCC----HHhhchHHHHHHHHHHHHHH
Q 001990 926 RLMDYGFHGP----TMS-WP-VPGTLMIEPTESES----KVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 926 ~L~e~Gi~~~----~~~-~p-v~~~lris~t~~~t----~eeId~~~~~i~aL~~i~~~ 974 (985)
.|.+.||.+. ... .+ .++.+||+++..+| ++|++ ++++.|+++++.
T Consensus 375 ~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~---~~~~~l~~~l~~ 430 (483)
T 1rv3_A 375 VLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQ---KVAHFIHRGIEL 430 (483)
T ss_dssp HHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHH---HHHHHHHHHHHH
T ss_pred HHHhCCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHH---HHHHHHHHHHHh
Confidence 9999999875 211 11 24789999988777 99999 999999998765
No 65
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.85 E-value=1.2e-20 Score=231.05 Aligned_cols=330 Identities=12% Similarity=0.055 Sum_probs=223.2
Q ss_pred ceecCCCCCCCCCcHHHHHHHHhC-C---cccccc--CCChhhHhh-----HHH----HHHHHHHHHHHHhhCCCCccee
Q 001990 168 KSFIGMGYYNTHVPPVILRNIMEN-P---AWYTQY--TPYQAEIAQ-----GRL----ESLLNFQTMIADLTGLPMSNAS 232 (985)
Q Consensus 168 ~~~lG~g~~~~~~p~~v~~~i~~~-~---~~~t~~--~py~~e~sq-----g~l----~~i~e~q~~ia~L~g~~~~~~s 232 (985)
..|.+.|.|++++|......-+.. | +|++.| ++|++++++ |.+ ..+.++|+.+|+++|++.+ +.
T Consensus 115 ~~~~~~~~~~~~~Pgh~~g~~~~~~p~g~~~~~~~g~~~~~~di~~~~~~l~~l~~~~~~i~e~e~~lA~~~gae~~-i~ 193 (730)
T 1c4k_A 115 KEYVSRYLIQFDCPGHQGGQYYRKHPAGREFYDFFGETVFRADLCNADVALGDLLIHEGPAVAAEKHAARVYNADKT-YF 193 (730)
T ss_dssp HHHHTSCCCCCSSSTTTTTTTGGGSHHHHHHHHHHCSHHHHSCCCTTSGGGCBTTTTBTHHHHHHHHHHHHTTCSEE-EE
T ss_pred HHHHhcCCcccccCccccccccCCcchhhHHHhhcchhhhhHHhhhhhccCCCccCChHHHHHHHHHHHHHHCCCcE-EE
Confidence 457788888888776442100000 0 455555 677877777 555 6789999999999999864 44
Q ss_pred eccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe-------------Cchhh-----hc-
Q 001990 233 LLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS-------------DLKDI-----DY- 293 (985)
Q Consensus 233 l~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~-------------~~~~l-----~~- 293 (985)
+++|+|++..++++++. . +||+||+++.+|+++...+ ++..|++++++ |+++| ++
T Consensus 194 v~nGtt~an~~ai~al~-~--pGD~VLv~~~~H~S~~~~~---~~l~Ga~~v~v~~~~~~~~i~g~id~e~L~~~~le~~ 267 (730)
T 1c4k_A 194 VLGGSSNANNTVTSALV-S--NGDLVLFDRNNHKSVYNSA---LAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIREL 267 (730)
T ss_dssp ESSHHHHHHHHHHHHHC-C--TTCEEEEETTCCHHHHHHH---TTTTCCEEEEECEEECTTCCEEEECGGGSCHHHHHHH
T ss_pred ECCHHHHHHHHHHHHhc-C--CCCEEEEcCCchHHHHHHH---HHHCCCEEEEEeCCccccCccCCCCHHHHhhhHHHHH
Confidence 66777788888877753 3 8999999999999999872 23457776654 44566 66
Q ss_pred cCCC------E----eEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecccccc--C---C--CCCC---cccce---
Q 001990 294 KSGD------V----CGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALT--I---L--KPPG---ELGAD--- 350 (985)
Q Consensus 294 l~~~------t----~~V~v~~pn~~G~i~dl~~I~~~a~~~galliV~a~~~alg--~---l--~~p~---~~GaD--- 350 (985)
+.++ + ++|++++||++|.+.|+++|+++||++|++++||. .++.+ . . ..+. ++|+|
T Consensus 268 i~~~~~~~~~t~~~vklviv~~pn~~G~v~dl~~I~~la~~~g~~livDe-Ah~~~~~f~~~~~g~~~l~~~~~g~D~~~ 346 (730)
T 1c4k_A 268 AAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDS-AWVGYEQFIPMMRNSSPLLIDDLGPEDPG 346 (730)
T ss_dssp TTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEEC-TTCCGGGSSGGGGGGCTTSCCCCCTTSCE
T ss_pred hhcCCcccccccCCCeEEEEECCCCCCeecCHHHHHHHHHHcCCeEEEEc-ccccccccCcccCCcCcccccccCCCCCC
Confidence 6554 5 89999999999999999999999999999999952 33211 1 1 1122 45898
Q ss_pred -EEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHH
Q 001990 351 -IVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLA 428 (985)
Q Consensus 351 -i~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a 428 (985)
++++|+ |+|++|. ++|+++++++.+.. +...+ + .. .+ +........+++++ ..+.+
T Consensus 347 ~iv~~S~hK~L~g~~-----~gg~I~v~~~~l~g-~~~~i----~---~~----~~--~~~~~~~~stsp~~---~~iaa 404 (730)
T 1c4k_A 347 IIVVQSVHKQQAGFS-----QTSQIHKKDSHIKG-QLRYC----D---HK----HF--NNSFNLFMSTSPFY---PMYAA 404 (730)
T ss_dssp EEEEECHHHHSSCCT-----TCEEEEEECGGGTT-STTCC----C---HH----HH--HHHHHHHSCSSCCH---HHHHH
T ss_pred EEEEECCCCCCCCCC-----CEEEEEecchhhcC-ccccc----C---HH----HH--HHHHHHhCCCCCcH---HHHHH
Confidence 999998 7765432 35789888765421 00110 0 00 00 00001122233332 33444
Q ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhc-CCCEEEcCCCC---------------------------------
Q 001990 429 NMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQGLPF--------------------------------- 474 (985)
Q Consensus 429 ~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~~~~~--------------------------------- 474 (985)
+.+++ .++..++-++..++..+++++++++|++ +.|++++.+..
T Consensus 405 l~aA~--~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 482 (730)
T 1c4k_A 405 LDVNA--AMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYE 482 (730)
T ss_dssp HHHHH--HHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCT
T ss_pred HHHHH--HHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccchhcccc
Confidence 44443 4444433356678899999999999998 53488863210
Q ss_pred --------cce--EEEecC------------C--HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 475 --------FDT--VKVKCA------------D--AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 475 --------~~~--~~i~~~------------~--~~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.++ ++|..+ + +.++.+.|.++||.++......+|+++|..+|++++++|+++|..
T Consensus 483 ~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~~~~~ir~~~s~g~t~e~i~~Ll~aL~~ 561 (730)
T 1c4k_A 483 GYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQ 561 (730)
T ss_dssp TCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred ccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 122 566663 2 789999999999999887788999999999999999999999974
No 66
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.85 E-value=2.5e-20 Score=214.03 Aligned_cols=306 Identities=11% Similarity=0.054 Sum_probs=186.8
Q ss_pred cHHHHHHHHHHHHHHHhCCCccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEcCCCCCCcHHHHH---hcCcE
Q 001990 629 GYQEMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRN-VCIIPVSAHGTNPATAA---MCGMK 703 (985)
Q Consensus 629 G~~~~~~el~~~la~l~G~~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~-~Vlv~~~~Hg~~~~~~~---~~G~~ 703 (985)
+..+...++++++++++|.+... ++.++|++++..++.++..+.. .+++ +||++...|+++...+. ..|++
T Consensus 60 ~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~~~~----~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~ 135 (400)
T 3vax_A 60 RAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAPYGE----RTGRRHIITSAIEHKAVLEPLEHLAGRGFE 135 (400)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHHHHH----HHTCCEEEEETTSCHHHHHHHHHHHTTTCE
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHHhhc----cCCCCEEEECccccHhHHHHHHHHHhcCCe
Confidence 34466788999999999998643 5566777776555554432211 1467 89999887766654433 36999
Q ss_pred EEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcC
Q 001990 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~ 782 (985)
++.+|.++++.+|+++|+++++ +++++|++++| |++|.+. |+++|+++|+++|+++++|++|..+.... ....+
T Consensus 136 ~~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~la~~~~~~li~D~a~~~~~~~~-~~~~~ 210 (400)
T 3vax_A 136 VDFLTPGPSGRISVEGVMERLR---PDTLLVSLMHVNNETGVIQ-PVAELAQQLRATPTYLHVDAAQGYGKVPG-DLTTP 210 (400)
T ss_dssp EEEECCCTTCCCCHHHHHTTCC---TTEEEEECCSBCTTTCBBC-CHHHHHHHHTTSSCEEEEECTTTTTTSGG-GGGSC
T ss_pred EEEEccCCCCCcCHHHHHHhcC---CCceEEEEECCCCCceeeC-cHHHHHHHHHhcCCEEEEEhhhhcCCCCc-Chhhc
Confidence 9999999889999999999997 78999999998 5799998 89999999999999999999986433222 12234
Q ss_pred CCcEEEeCCcccccccCCCCCCcceeee-eccc-cc---CcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHH
Q 001990 783 GADVCHLNLHKTFCIPHGGGGPGMGPIG-VKKH-LA---PFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISY 857 (985)
Q Consensus 783 g~Di~~~s~hKtl~~p~g~GGPg~G~l~-~~~~-l~---~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~ 857 (985)
+|++++|+||++ |++|+|+++ ++++ +. ..+.....+... ......++.+. ..+.+..
T Consensus 211 -~d~~~~s~~K~~------g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--------~~~~a~~ 272 (400)
T 3vax_A 211 -IDMISISGHKIG------APKGVGALVTRRREEMDDERVPLEPIMFGGGQ---ERKLRPGTLPV--------PLIMGLA 272 (400)
T ss_dssp -CSEEEEETGGGT------SCSSCEEEEECBCSSSTTCBCCCCCSSCSSCT---GGGTSCSCCCH--------HHHHHHH
T ss_pred -CcEEEEeHHHhC------CCCceEEEEEecchhccccccccCceecCCCc---eeeeecCCCCH--------HHHHHHH
Confidence 899999999954 334688888 8762 22 122221111100 00011111111 1111122
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCC-ceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCC
Q 001990 858 TYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT 936 (985)
Q Consensus 858 a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~-~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~ 936 (985)
+.+..+ .+++.+..++..++++++.+.|+ ...+...++.. ...+.+.+.+. +.+..++.+.|. +||.+..
T Consensus 273 ~al~~~-~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~L~-~gi~v~~ 343 (400)
T 3vax_A 273 EAAKIF-EAEHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQDHVVPHILNLSFE------DVDAEAFLVTLK-DLVAVAT 343 (400)
T ss_dssp HHHHHH-HHSHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTTSBCTTEEEEECT------TCCHHHHHHHHH-HHHHHTT
T ss_pred HHHHHH-HhhHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCcccCCCCEEEEEeC------CCCHHHHHHHHh-cCcEEEe
Confidence 333333 34567777788888999999997 32332222221 11123444443 467889999999 9997643
Q ss_pred CC---------------CCC-----CCEEEEec-cCCCCHHhhchHHHHHHHHHHHHH
Q 001990 937 MS---------------WPV-----PGTLMIEP-TESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 937 ~~---------------~pv-----~~~lris~-t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
.. +++ .+.+|+++ +..+|++|++ +++++|+++++
T Consensus 344 g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~---~~~~~l~~~~~ 398 (400)
T 3vax_A 344 GSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVE---ELARGVAKLKP 398 (400)
T ss_dssp TTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC----------------------
T ss_pred cccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHH---HHHHHHHHHhc
Confidence 11 111 38899999 9999999999 99999988765
No 67
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.85 E-value=1.3e-19 Score=204.68 Aligned_cols=285 Identities=17% Similarity=0.113 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHhCCCccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCCC
Q 001990 634 FNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~~ 712 (985)
..++++++++++|.+... +++++|++++..++.++. .++++|+++.+.|..+...++..|++++.+|.+++
T Consensus 53 ~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 124 (354)
T 3ly1_A 53 ILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYA--------SLEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLDN 124 (354)
T ss_dssp HHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEESSSCTHHHHHHHHTTCEEEEECCCTT
T ss_pred hHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHHh--------CCCCeEEECCCCchHHHHHHHHcCCEEEEecCCCC
Confidence 568899999999987655 445556655543333221 36789999998887777778889999999999888
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHH--cCCEEEEEccccccccCCC--CC----CcC-
Q 001990 713 GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHD--NGGQVYMDGANMNAQVGLT--SP----GYI- 782 (985)
Q Consensus 713 g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~--~g~lliVD~a~~~~~~g~~--~~----g~~- 782 (985)
+.+|+++|+++++++ +++++|++++| |++|.+. |++++.++++. +|+++++|++|......-. .+ ...
T Consensus 125 ~~~d~~~l~~~l~~~-~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 202 (354)
T 3ly1_A 125 WAFDIEGLKAAVAAY-SGPSIVYLVNPNNPTGTIT-PADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGA 202 (354)
T ss_dssp SCCCHHHHHHHHHTC-SSCEEEEEESSCTTTCCCC-CHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTC
T ss_pred CCCCHHHHHHHhccC-CCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcC
Confidence 999999999999842 57899999999 4699987 77777777777 9999999999852211100 11 122
Q ss_pred CCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHH
Q 001990 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 783 g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~ 862 (985)
+.++++.|+||+|+. +|.++|++++++++.+.+.... ... +. +.....++.+++..
T Consensus 203 ~~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~------------~~~----~~----~~~~~~a~~~~l~~ 258 (354)
T 3ly1_A 203 ENIILLKTFSKIHAM----AGMRVGYAVAHPTVIALMGRYV------------AGE----KI----NFSGVDAALASMND 258 (354)
T ss_dssp SSEEEEEESSSTTCC----GGGCCEEEECCHHHHHHHGGGT------------TCS----CC----CHHHHHHHHHHTTC
T ss_pred CCEEEEeeChhhccC----hhhhheeeecCHHHHHHHHHhc------------CCC----CC----CHHHHHHHHHHhcC
Confidence 556889999999853 4678999999887765543210 000 11 11112222233321
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC-C
Q 001990 863 MGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW-P 940 (985)
Q Consensus 863 lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~-p 940 (985)
.+.+.+..++..++++++.+.|++ ++.+. .+.+. .+.++++ + +..++.+.|.++||.+. ..+ +
T Consensus 259 --~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~---~~~~~~~------~-~~~~~~~~l~~~gi~v~-g~~~~ 323 (354)
T 3ly1_A 259 --SAFITYSKKSNDVSRQILLKALEDLKLPYL--PSEGN---FVFHQLV------V-PLKDYQTHMADAGVLIG-RAFPP 323 (354)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHTCCBC--CCCSS---EEEEECS------S-CHHHHHHHHHHTTEECC-CCCTT
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHCCCeEC--CCCce---EEEEECC------C-CHHHHHHHHHHCCEEEe-ecCCC
Confidence 244666677778888999999987 45442 21222 2345553 2 67899999999999986 332 2
Q ss_pred CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHH
Q 001990 941 VPGTLMIEPTESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 941 v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
.++.+|++++ |++|++ +++++|+++++
T Consensus 324 ~~~~iRis~~---~~~~i~---~~~~~l~~~l~ 350 (354)
T 3ly1_A 324 ADNWCRISLG---TPQEMQ---WVADTMREFRK 350 (354)
T ss_dssp CTTEEEEECC---CHHHHH---HHHHHHHHHHH
T ss_pred CCCEEEEEcC---CHHHHH---HHHHHHHHHHH
Confidence 4589999975 899999 99999998875
No 68
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.85 E-value=3.6e-19 Score=203.02 Aligned_cols=336 Identities=15% Similarity=0.128 Sum_probs=228.9
Q ss_pred HHHHHHHHHHHHcCCCccceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHHHHHHHHHhhCCC-C
Q 001990 150 ESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLP-M 228 (985)
Q Consensus 150 e~e~~~~~~~~~~~n~~~~~~lG~g~~~~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g~~-~ 228 (985)
..+++++|..+. +..|.++ .+ +..+|+.+.+++.+... . .|.+. ..+...++++.+++++|.+ .
T Consensus 7 ~~~~r~~f~~~~--~~~~l~~--~~--~~~~~~~v~~a~~~~~~--~---~~~~~----~~~~~~~~~~~la~~~g~~~~ 71 (386)
T 2dr1_A 7 EEAFKEVYEMVK--PKYKLFT--AG--PVACFPEVLEIMKVQMF--S---HRSKE----YRKVHMDTVERLREFLEVEKG 71 (386)
T ss_dssp HHHHHHHHHHHS--CCSEECC--SS--SCCCCHHHHHHTTSCCC--C---TTSHH----HHHHHHHHHHHHHHHHTCSSS
T ss_pred hHHHHHHHhhcC--ccceeec--CC--CcCCcHHHHHHHhcccc--c---ccCHH----HHHHHHHHHHHHHHHhCCCCC
Confidence 366788886442 3344333 33 23466666655443221 1 23222 2456677889999999998 5
Q ss_pred cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChh--HHHHHHHhhcCCCeEEEEeCc--------hhhhc-c--C
Q 001990 229 SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQ--TIDICITRADGFDIKVVVSDL--------KDIDY-K--S 295 (985)
Q Consensus 229 ~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s--~~~~~~~~a~~~gi~v~~~~~--------~~l~~-l--~ 295 (985)
.++.+++|+|.+++.++.++ .. +||+|++++..|++ +...+ +..|++++.++. ++|++ + +
T Consensus 72 ~~v~~~~g~t~a~~~~~~~l-~~--~gd~vl~~~~~~~~~~~~~~~----~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~ 144 (386)
T 2dr1_A 72 EVLLVPSSGTGIMEASIRNG-VS--KGGKVLVTIIGAFGKRYKEVV----ESNGRKAVVLEYEPGKAVKPEDLDDALRKN 144 (386)
T ss_dssp EEEEESSCHHHHHHHHHHHH-SC--TTCEEEEEESSHHHHHHHHHH----HHTTCEEEEEECCTTCCCCHHHHHHHHHHC
T ss_pred cEEEEeCChHHHHHHHHHHh-hc--CCCeEEEEcCCchhHHHHHHH----HHhCCceEEEecCCCCCCCHHHHHHHHhcC
Confidence 56778899999888877765 23 78999999999988 44444 345778777653 45665 6 5
Q ss_pred CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCC-CCCCcccceEEEecC-ccccccCCCCCCceEE
Q 001990 296 GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSA-QRFGVPMGYGGPHAAF 372 (985)
Q Consensus 296 ~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l-~~p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~ 372 (985)
+++++|++++| |++|.+.|+++|.++|+++|+++++| +..+.+.. .+..++|+|++++|. |+|++|. ++|+
T Consensus 145 ~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~-----g~G~ 218 (386)
T 2dr1_A 145 PDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVD-AVSAMGGADIKFDKWGLDVVFSSSQKAFGVPP-----GLAI 218 (386)
T ss_dssp TTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEE-CTTTBTTBCCCTTTTTCSEEEEETTSTTCCCS-----SCEE
T ss_pred CCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEE-ccccccCccccccccCCcEEEEeccccccCCC-----ceEE
Confidence 78999999987 78999999999999999999999995 34555543 234678999999998 8786442 4799
Q ss_pred EEEchhhHhcCCC-ceeeeeecCCCCcceEEeccc--cccc-ccccccCCCccchhHHHHHHHHHHHHHcCcc-hHHHHH
Q 001990 373 LATSQEYKRMMPG-RIVGVSIDSSGKPALRVAMQT--REQH-IRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIA 447 (985)
Q Consensus 373 l~~~~~~~~~lp~-~~vG~s~d~~g~~~~~l~l~t--re~~-~rre~atsni~t~~~l~a~~aa~y~~~~g~~-Gl~~i~ 447 (985)
+++++++++.+.+ +..| +.+++.. +..+ .+...+|.|. ....++.+++ ..+... |++++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~~l--~~~~~~g~~~~~~ 283 (386)
T 2dr1_A 219 GAFSERFLEIAEKMPERG----------WYFDIPLYVKYLKEKESTPSTPPM---PQVFGINVAL--RIIEKMGGKEKWL 283 (386)
T ss_dssp EEECHHHHHHHTTCTTCC----------STTCHHHHHHHHHHHSSCSSCCCH---HHHHHHHHHH--HHHHHTTCHHHHH
T ss_pred EEECHHHHHHHhcCCCCc----------eEEeHHHHHHhhccCCCCCCCCCH---HHHHHHHHHH--HHHHHhcCHHHHH
Confidence 9999988776632 1112 1111110 0000 0112222222 2233333333 444445 789999
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEcCCC---CcceEEEecC-C--HHHHHHHHHHcCceeeee----cCCeEEEEeccCCCH
Q 001990 448 QRVHGLAGTFALGLKKLGTVEVQGLP---FFDTVKVKCA-D--AHAIASAAYKIEMNLRVV----DSNTVTASFDETTTL 517 (985)
Q Consensus 448 ~~~~~~a~~l~~~L~~~g~~~~~~~~---~~~~~~i~~~-~--~~~l~~~L~~~Gi~~~~~----~~~~lris~~~~~t~ 517 (985)
++..++++++.+.|+++| +++..+. ....+.+..+ + ..++.++|.++||.+... .++.+|++++.++|+
T Consensus 284 ~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~ 362 (386)
T 2dr1_A 284 EMYEKRAKMVREGVREIG-LDILAEPGHESPTITAVLTPPGIKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKF 362 (386)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCBSSCTTCBCSSEEEEECCTTCCHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCH
T ss_pred HHHHHHHHHHHHHHHHcC-CeeCcCccccCCceEEEEcCCCCCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCH
Confidence 999999999999999986 8776431 2234566665 2 788999999999988653 257899999999999
Q ss_pred HHHHHHHHHHhC
Q 001990 518 EDVDKLFIVFAG 529 (985)
Q Consensus 518 edid~ll~~l~~ 529 (985)
+|+++++++|..
T Consensus 363 ~~i~~~~~~l~~ 374 (386)
T 2dr1_A 363 EDIQEMLDNLRE 374 (386)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999974
No 69
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.85 E-value=9.4e-20 Score=209.86 Aligned_cols=330 Identities=11% Similarity=0.042 Sum_probs=223.4
Q ss_pred ecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHHHHHHHHHhhCCCCcc-eeeccchHHHHHHHHHHh
Q 001990 170 FIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSN-ASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 170 ~lG~g~~~~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g~~~~~-~sl~~~~ta~~ea~~~a~ 248 (985)
..+.| |..+|+.+.+++.+ .. . ..|.++ ..+.+.++++.+++++|.+..+ +.+..+||.++++++.++
T Consensus 16 ~~~pg--p~~~~~~v~~a~~~-~~-~---~~~~~~----~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~ 84 (411)
T 3nnk_A 16 LMGPG--PINADPRVLRAMSS-QL-I---GQYDPA----MTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSA 84 (411)
T ss_dssp EESSS--CCCCCHHHHHHHTS-CC-C---CTTCHH----HHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHH
T ss_pred eecCC--CCCCCHHHHHHhhc-cc-c---ccccHH----HHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHh
Confidence 44555 55678887655443 22 1 222232 2366778889999999998776 445567888888777665
Q ss_pred hhhcCCCCEEEEcCCCChh--HHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCC-CEeEEEEEcC-CCCeeeccH
Q 001990 249 NIQKGKKKTFIIASNCHPQ--TIDICITRADGFDIKVVVSDL--------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDY 315 (985)
Q Consensus 249 ~~~~~~g~~Vlv~~~~h~s--~~~~~~~~a~~~gi~v~~~~~--------~~l~~-l~~-~t~~V~v~~p-n~~G~i~dl 315 (985)
+. +||+|++++..|++ +...+ +..|++++.++. +++++ +++ ++++|++++| |++|.+.|+
T Consensus 85 -~~--~gd~Vl~~~~~~~~~~~~~~~----~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l 157 (411)
T 3nnk_A 85 -IR--PGDKVLVPVFGRFGHLLCEIA----RRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPL 157 (411)
T ss_dssp -CC--TTCEEEEEECSHHHHHHHHHH----HHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred -cC--CCCEEEEecCCchHHHHHHHH----HHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccH
Confidence 33 88999999999987 44443 346888887754 45555 554 8999999986 789999999
Q ss_pred HHHHHHHHhCCcEEEEEeccccccCC-CCCCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCc------e
Q 001990 316 GDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGR------I 387 (985)
Q Consensus 316 ~~I~~~a~~~galliV~a~~~alg~l-~~p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~------~ 387 (985)
++|+++|+++|+++++|. ..+.+.. ....++|+|+++++. |+|++ ++++|++++++++.+.+... +
T Consensus 158 ~~i~~l~~~~~~~li~De-a~~~~~~~~~~~~~~~d~~~~s~~K~l~~-----~~g~g~~~~~~~~~~~~~~~~~~~~~~ 231 (411)
T 3nnk_A 158 AELGEICRRYDALFYTDA-TASLGGNPLETDVWGLDAVSAGMQKCLGG-----PSGTSPITLSARMEEAIRRRKCVEEGI 231 (411)
T ss_dssp TTHHHHHHHHTCEEEEEC-TTTBTTBCCCTTTTTCSEEECCSTTTTCC-----CSSEEEEEECHHHHHHHHTTCCCCGGG
T ss_pred HHHHHHHHHcCCEEEEEC-CcccCCcccchhccCCcEEEecCccccCC-----CCceEEEEECHHHHHHHhhcccccccc
Confidence 999999999999999953 4455544 234678999999998 76654 34689999999877654221 1
Q ss_pred eeeeec---CCCCcceEEecccc---cccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH
Q 001990 388 VGVSID---SSGKPALRVAMQTR---EQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGL 461 (985)
Q Consensus 388 vG~s~d---~~g~~~~~l~l~tr---e~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L 461 (985)
.|.... ....+.+.+++... .+..++..+|.|+ ....++.+++ ..+..+|++++.++..++++++++.|
T Consensus 232 ~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~al--~~~~~~g~~~~~~~~~~~~~~l~~~L 306 (411)
T 3nnk_A 232 RTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEAT---TALFGARECA--RLILQEGLDYGIARHKLHGDALVKGI 306 (411)
T ss_dssp CCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCcccccchHHHHhhhccccCCCCCCCH---HHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 110000 00011122221100 0122334566665 3344444444 44556689999999999999999999
Q ss_pred hcCCCEEEcCCC---CcceEEEecC-C--HHHHHHHHHHc-Cceeeee----cCCeEEEEe-ccCCCHHHHHHHHHHHhC
Q 001990 462 KKLGTVEVQGLP---FFDTVKVKCA-D--AHAIASAAYKI-EMNLRVV----DSNTVTASF-DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 462 ~~~g~~~~~~~~---~~~~~~i~~~-~--~~~l~~~L~~~-Gi~~~~~----~~~~lris~-~~~~t~edid~ll~~l~~ 529 (985)
+++| +++..+. ....+.+..+ + ..++.++|.++ ||.++.. .++.+|+++ ...+|++|+++++++|+.
T Consensus 307 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~ 385 (411)
T 3nnk_A 307 QAMG-LETFGDLKHKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEA 385 (411)
T ss_dssp HHTT-CCBCSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred HHcC-CEeCCCcccccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHH
Confidence 9986 8776432 1234556664 2 88999999876 9988642 357999998 667799999999999974
No 70
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.85 E-value=5.7e-20 Score=212.31 Aligned_cols=303 Identities=17% Similarity=0.142 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHHHhCCCccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCE-EEEcCCCCCCcHHHH----Hhc--CcE
Q 001990 632 EMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNV-CIIPVSAHGTNPATA----AMC--GMK 703 (985)
Q Consensus 632 ~~~~el~~~la~l~G~~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~-Vlv~~~~Hg~~~~~~----~~~--G~~ 703 (985)
+...++++++++++|.+... +++++|+++...++.+++.+.... .++++ |+++..+|+++...+ +.. |++
T Consensus 71 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~~~~~~--~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~ 148 (416)
T 1qz9_A 71 DLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATR--SPERRVIVTETSNFPTDLYIAEGLADMLQQGYT 148 (416)
T ss_dssp GHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHH--STTCCEEEEETTSCHHHHHHHHHHHHHHCSSCE
T ss_pred HHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhccccccc--CCCCcEEEEcCCCCCchHHHHHHHHHHhcCCce
Confidence 45678999999999987533 455666665544444443221000 14454 566666776554332 233 999
Q ss_pred EEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcC
Q 001990 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~ 782 (985)
++.+|. +++|+++|+ +++++|++++| |++|.+. |+++|+++|+++|+++|+|++|..+...+ ....+
T Consensus 149 ~~~v~~-------~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~a~~~g~~~~-~~~~~ 216 (416)
T 1qz9_A 149 LRLVDS-------PEELPQAID---QDTAVVMLTHVNYKTGYMH-DMQALTALSHECGALAIWDLAHSAGAVPV-DLHQA 216 (416)
T ss_dssp EEEESS-------GGGHHHHCS---TTEEEEEEESBCTTTCBBC-CHHHHHHHHHHHTCEEEEECTTTTTTSCC-CHHHH
T ss_pred EEEeCc-------HHHHHHHhC---CCceEEEEeccccCccccc-CHHHHHHHHHHcCCEEEEEccccccCcCC-Chhhc
Confidence 999886 788888887 78999999998 5799998 89999999999999999999996433221 12245
Q ss_pred CCcEEEeCCcccccccCCCCCCcc-eeeeecccccCcCCCCccccCCCC------CCC-------CCCCCCCCcccccch
Q 001990 783 GADVCHLNLHKTFCIPHGGGGPGM-GPIGVKKHLAPFLPSHPVVSTGGI------PAP-------EKSQPLGTIAAAPWG 848 (985)
Q Consensus 783 g~Di~~~s~hKtl~~p~g~GGPg~-G~l~~~~~l~~~lpg~~~g~~~~~------~~~-------~~~~~t~~i~s~~~g 848 (985)
++|++++|+||+|+ +|||+ |++++++++.+.+.....|+.+.. ..+ ....++.
T Consensus 217 ~~d~~~~s~~K~l~-----~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------- 283 (416)
T 1qz9_A 217 GADYAIGCTYKYLN-----GGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQ-------- 283 (416)
T ss_dssp TCSEEEECSSSTTC-----CCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCC--------
T ss_pred CCCEEEecCcccCC-----CCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCC--------
Confidence 78999999999983 57888 999999887665543222211000 000 0001111
Q ss_pred hhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc-C--CeeEcCCCC--ceeEEEEEEecCccccCCCCHHHH
Q 001990 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH-Y--PILFRGVNG--TVAHEFIVDLRGLKNTAGIEPEDV 923 (985)
Q Consensus 849 ~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~-~--~i~~~g~~~--~~~~~~vv~~~~~~~~~g~~~~~l 923 (985)
+...+.++.+.+..+..+++.+..++..++++++.+.|++. . ++...++.+ ...+.+.+.+. +..++
T Consensus 284 ~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------~~~~l 355 (416)
T 1qz9_A 284 PITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHP--------EGYAV 355 (416)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECT--------THHHH
T ss_pred CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecC--------CHHHH
Confidence 12223334455666666677788888889999999999763 2 333323211 11223445542 36789
Q ss_pred HHHHHHCCCccCCCCCCCCCEEEEecc-CCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 924 AKRLMDYGFHGPTMSWPVPGTLMIEPT-ESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 924 ~~~L~e~Gi~~~~~~~pv~~~lris~t-~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
.+.|.++||.+... ..+.+|++++ ..+|++|++ +++++|++++++.
T Consensus 356 ~~~l~~~gi~~~~~---~~~~lRis~~~~~~t~~~i~---~~~~~l~~~~~~~ 402 (416)
T 1qz9_A 356 IQALIDRGVIGDYR---EPRIMRFGFTPLYTTFTEVW---DAVQILGEILDRK 402 (416)
T ss_dssp HHHHHTTTEECEEE---TTTEEEEECCTTTCCHHHHH---HHHHHHHHHHHHT
T ss_pred HHHHHhCCcEeccC---CCCeEEEeCcccCCCHHHHH---HHHHHHHHHHhcc
Confidence 99999999986421 2478999998 489999999 9999999988753
No 71
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.85 E-value=4.5e-19 Score=201.90 Aligned_cols=291 Identities=16% Similarity=0.121 Sum_probs=208.9
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhh-hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001990 206 AQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 206 sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~ 284 (985)
+++..+.+.++++.+++++|.++.++.+++|+|.+++.++.++. ...++||+|++++..|+++...++. ++..|++++
T Consensus 38 ~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~~~~g~~~~ 116 (382)
T 4eb5_A 38 GFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKF-LQKQGFEVE 116 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHH-HTTTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHHH-HHhCCcEEE
Confidence 45566788899999999999987788888999999888877654 1002789999999999999888865 345788888
Q ss_pred EeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCC-CCCcccceEEE
Q 001990 285 VSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVV 353 (985)
Q Consensus 285 ~~~~--------~~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~-~p~~~GaDi~v 353 (985)
.++. ++|++ +++++++|++++| |++|.+.|+++|.++|+++|++ ++| +..++|... +...+++|+++
T Consensus 117 ~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D-~a~~~g~~~~~~~~~~~di~~ 194 (382)
T 4eb5_A 117 YIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HID-ATASVGQIEVDVEKIGADMLT 194 (382)
T ss_dssp EECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEE-CTTTBTTBCCCHHHHTCSEEE
T ss_pred EeccCCCCccCHHHHHHHhcCCCeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEE-cchhcCCcccCccccCCCEEE
Confidence 8764 45666 7778999988887 6899999999999999999999 885 344555332 12346899999
Q ss_pred ecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHH
Q 001990 354 GSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 354 ~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~ 433 (985)
+|.+++.+| +|+|+++++++. .+...+.|+ . +..++..+|.|. ....++.+++
T Consensus 195 ~s~sK~~g~-----~g~G~~~~~~~~--~l~~~~~~~------~-----------~~~~~~~~~~~~---~~~~~~~~al 247 (382)
T 4eb5_A 195 ISSNDIYGP-----KGVGALWIRKEA--KLQPVILGG------G-----------QENGLRSGSENV---PSIVGFGKAA 247 (382)
T ss_dssp EETGGGTCC-----SSCEEEEEETTC--CCCCSSCSS------C-----------TGGGTSCSCCCH---HHHHHHHHHH
T ss_pred eehHHhcCC-----CceEEEEEcccc--ccCceecCC------C-----------ccccccCCCccH---HHHHHHHHHH
Confidence 998334323 357889888763 121111110 0 011123355454 2333444444
Q ss_pred HHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCC--C-cceEEEecCC--HHHHHHHHHHcCceeeee------
Q 001990 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP--F-FDTVKVKCAD--AHAIASAAYKIEMNLRVV------ 502 (985)
Q Consensus 434 y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~--~-~~~~~i~~~~--~~~l~~~L~~~Gi~~~~~------ 502 (985)
..+ .++++++.++..++++++.+.|+++.++++...+ . ...+.+..++ ..++.+.|.++||.+...
T Consensus 248 --~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~ 324 (382)
T 4eb5_A 248 --EIT-AMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQASTGSACSSK 324 (382)
T ss_dssp --HHH-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTSCHHHHHHHHHHHTCBCBCCCGGGTS
T ss_pred --HHH-HHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCCcCHHHHHHHHHHCCEEEeccccccCC
Confidence 222 3478899999999999999999998338887432 1 2345566554 788999999999987542
Q ss_pred -----------------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 503 -----------------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -----------------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.++.+|++++..+|++|+++++++|..
T Consensus 325 ~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 368 (382)
T 4eb5_A 325 TLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPG 368 (382)
T ss_dssp SCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 147899999999999999999999974
No 72
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.85 E-value=1.4e-20 Score=215.35 Aligned_cols=292 Identities=14% Similarity=0.080 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhc--CCCeEEEEe
Q 001990 209 RLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRAD--GFDIKVVVS 286 (985)
Q Consensus 209 ~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~--~~gi~v~~~ 286 (985)
..+.+.++++.+++++|.+ ..+.++.+||.++++++..+ . +||+||+++..|++... ...++ +.+.+++.+
T Consensus 33 ~~~~~~~~~~~l~~~~~~~-~~v~~~~sgt~a~~~~~~~~--~--~gd~vi~~~~~~~~~~~--~~~~~~~g~~~~~~~~ 105 (379)
T 3ke3_A 33 FQEVMNDLLSNLKTVYNAE-AAVIIPGSGTYGMEAVARQL--T--IDEDCLIIRNGWFSYRW--TQILEKGKFAKSSTVL 105 (379)
T ss_dssp HHHHHHHHHHHHHHHHTCS-EEEEEESCHHHHHHHHHHHH--C--TTCEEEEEECSHHHHHH--HHHHHHHCCSSEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCC-CEEEEcCChhHHHHHHHHhC--C--CCCeEEEEeCCchhHHH--HHHHHHhCCCCceEEE
Confidence 3477788899999999988 45656689999988875433 3 78999999988876531 11222 223455443
Q ss_pred -----------------Cchhhhc-c-CCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEeccccccCCC-
Q 001990 287 -----------------DLKDIDY-K-SGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILK- 342 (985)
Q Consensus 287 -----------------~~~~l~~-l-~~~t~~V~v~~p-n~~G~i~d---l~~I~~~a~~~galliV~a~~~alg~l~- 342 (985)
+++++++ + ++++++|++.++ |.+|.+.| +++|+++||++|+++++|. ..+ |...
T Consensus 106 ~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~-~~~-g~~~~ 183 (379)
T 3ke3_A 106 TAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDC-IAS-GCVWL 183 (379)
T ss_dssp ECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEEC-TTC-TTCCC
T ss_pred eccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEe-ccc-CCccc
Confidence 3345655 5 347888988875 78999999 9999999999999999953 344 5332
Q ss_pred CCCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccc-------ccccc
Q 001990 343 PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQ-------HIRRD 414 (985)
Q Consensus 343 ~p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~-------~~rre 414 (985)
...++|+|++++++ |+|++| ||+|++++++++++.+.+.. .+.|.+++....+ ..+..
T Consensus 184 ~~~~~~~d~~~~s~~K~l~~~-----~g~g~~~~~~~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~g~~~~ 249 (379)
T 3ke3_A 184 DMKELGIDVLISAPQKGWSST-----PCAGLVMLSAAAIKKVESTE---------SNCFSLDLKQWLTIMRAYENGGHAY 249 (379)
T ss_dssp CHHHHTCSEEEECTTTTTCSC-----CCEEEEEECHHHHHHHHTCC---------CSCSTTCHHHHHHHHHHHHTTSCCC
T ss_pred cccccCCCEEEecchhhcCCC-----CceEEEEECHHHHHhhhcCC---------CCceeecHHHHHHHHHhhhccCCCC
Confidence 33568999999998 767543 56899999999877763210 1123332211111 11111
Q ss_pred ccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCC--Ccce-EEEecCC-HHHHHH
Q 001990 415 KATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP--FFDT-VKVKCAD-AHAIAS 490 (985)
Q Consensus 415 ~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~--~~~~-~~i~~~~-~~~l~~ 490 (985)
.+|.|+ ..++++.+++ .++..+|++++.++..++++++++.|+++| ++++.++ .... +.+..++ .....+
T Consensus 250 ~~t~~~---~~~~a~~aal--~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g-~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 323 (379)
T 3ke3_A 250 HATMPT---DSLRQFRDAI--LEAKEIGFDILRDAQWELGNRVRKVLTDKG-IESVAAEGFEAPGVVVSYTERDDMHKGS 323 (379)
T ss_dssp SSCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBSBCTTCBCSSEEEEECSCHHHHSSH
T ss_pred CCCCCH---HHHHHHHHHH--HHHHHhcHHHHHHHHHHHHHHHHHHHHHcC-CEecCCccccCceEEEEccCCcchHHHH
Confidence 234443 5566666666 455567899999999999999999999997 8876432 2222 3344444 333477
Q ss_pred HHHHcCceeeeec---------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 491 AAYKIEMNLRVVD---------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 491 ~L~~~Gi~~~~~~---------~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.|.++||.+.... .+.+|+|++.++|++||++++++|+.
T Consensus 324 ~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~ 371 (379)
T 3ke3_A 324 AFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEK 371 (379)
T ss_dssp HHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHH
T ss_pred HHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHH
Confidence 8889999875431 57899999999999999999999974
No 73
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.85 E-value=3.1e-19 Score=200.87 Aligned_cols=318 Identities=13% Similarity=0.033 Sum_probs=220.5
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhh
Q 001990 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI 250 (985)
Q Consensus 171 lG~g~~~~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~ 250 (985)
+..|. ...|+.+.+++.+.-. ++ +. .+..+.+.++++.+|+++|.++.++.+++|+|.+++.++.++ .
T Consensus 5 ~~~~p--~~~~~~v~~a~~~~~~----~~-~~----~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~-~ 72 (352)
T 1iug_A 5 LTPGP--VRLHPKALEALARPQL----HH-RT----EAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNL-F 72 (352)
T ss_dssp CSSSS--CCCCHHHHHHHHSCCC----CT-TS----HHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHH-C
T ss_pred ccCCC--CCCCHHHHHHhccCCC----Cc-cC----HHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhc-c
Confidence 34553 3467777666655322 11 12 233456778999999999998777888899999888887765 2
Q ss_pred hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch-----hhhccC-CCEeEEEEEcC-CCCeeeccHHHHHHHHH
Q 001990 251 QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK-----DIDYKS-GDVCGVLVQYP-GTEGEVLDYGDFIKNAH 323 (985)
Q Consensus 251 ~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~~-----~l~~l~-~~t~~V~v~~p-n~~G~i~dl~~I~~~a~ 323 (985)
. +||+|++++..|+++. +...++..|++++.++.+ +++++. +++++|++.+| |.+|.+.|+++|.++|+
T Consensus 73 ~--~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~ 148 (352)
T 1iug_A 73 A--PGERVLVPVYGKFSER--FYEIALEAGLVVERLDYPYGDTPRPEDVAKEGYAGLLLVHSETSTGALADLPALARAFK 148 (352)
T ss_dssp C--TTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCTTTSCCSSCSEEEEESEETTTTEECCHHHHHHHHH
T ss_pred C--CCCeEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCCCCCCHHHHhccCCcEEEEEEecCCcceecCHHHHHHHHH
Confidence 3 7899999999999976 222234568888887652 222222 57899999988 78999999999999999
Q ss_pred hC--CcEEEEEeccccccCCC-CCCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcc
Q 001990 324 AN--GVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPA 399 (985)
Q Consensus 324 ~~--galliV~a~~~alg~l~-~p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~ 399 (985)
++ |+++++| +..++|... ...++|+|+++++. |++++| +|+|++++++++++.+.+ -+
T Consensus 149 ~~~~~~~li~D-~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~-----~g~G~~~~~~~~~~~~~~--~~---------- 210 (352)
T 1iug_A 149 EKNPEGLVGAD-MVTSLLVGEVALEAMGVDAAASGSQKGLMCP-----PGLGFVALSPRALERLKP--RG---------- 210 (352)
T ss_dssp HHCTTCEEEEE-CTTTBTTBCCCSGGGTCSEEEEESSSTTCCC-----SCEEEEEECHHHHHTCCC--CS----------
T ss_pred hhCCCCEEEEE-CCccccCcceeccccCeeEEEecCcccccCC-----CceeEEEECHHHHHHhhC--CC----------
Confidence 99 9999995 344555432 23457899999998 667533 468999999988877643 11
Q ss_pred eEEeccc--ccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCC-Ccc
Q 001990 400 LRVAMQT--REQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-FFD 476 (985)
Q Consensus 400 ~~l~l~t--re~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~~ 476 (985)
+.+.+.. ..+..++..+|.|. ....++.+++ ..+... ++++.++..++++++.+.|+++| +++..+. ...
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~al--~~~~~~-~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~ 283 (352)
T 1iug_A 211 YYLDLARELKAQKEGESAWTPAI---NLVLAVAAVL--EEVLPR-LEEHLALKAWQNALLYGVGEEGG-LRPVPKRFSPA 283 (352)
T ss_dssp STTCHHHHHHHHTTTCCSSCCCH---HHHHHHHHHH--HHHGGG-HHHHHHHHHHHHHHHHHHHHHTT-CEESCSSBCTT
T ss_pred ceeeHHHHHhhcccCCCCCCCCH---HHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHCC-CcccccccCCe
Confidence 1111110 00111222344443 3333444444 343333 88899999999999999999986 8887432 233
Q ss_pred eEEEecC-C--HHHHHHHHHHcCceeeee----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 477 TVKVKCA-D--AHAIASAAYKIEMNLRVV----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 477 ~~~i~~~-~--~~~l~~~L~~~Gi~~~~~----~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.+.+..+ + ..++.++|.++||.++.. .++.+|++++..+|++|+++++++|..
T Consensus 284 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 343 (352)
T 1iug_A 284 VAAFYLPEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFRE 343 (352)
T ss_dssp CEEEECCTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHH
Confidence 4566665 2 788999999999988653 257899999999999999999999974
No 74
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.85 E-value=1.4e-19 Score=206.11 Aligned_cols=321 Identities=13% Similarity=0.091 Sum_probs=223.5
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHHHHHHHHHhhCCCC--cceeeccchHHHHHHHHHHh
Q 001990 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPM--SNASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 171 lG~g~~~~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g~~~--~~~sl~~~~ta~~ea~~~a~ 248 (985)
++.| |..+|+.+.+++.+. +..+ +. ....+...++++.+++++|.+. .++.+++|+|.+++ ++.++
T Consensus 6 ~~~g--p~~~~~~v~~a~~~~---~~~~--~~----~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~ 73 (384)
T 3zrp_A 6 LHVG--PTTIKEDVLVAGLEN---NVGF--TS----KEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSL 73 (384)
T ss_dssp CCSS--CSCCCHHHHHHTTCC---SCCT--TS----HHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGG
T ss_pred ccCC--CCCCCHHHHHHhhcc---cccc--cc----HHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhh
Confidence 3455 334777776554432 2211 11 2235667788999999999988 78889999998888 55544
Q ss_pred hhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHH
Q 001990 249 NIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGD 317 (985)
Q Consensus 249 ~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~--------~~l~~-l~~-~t~~V~v~~p-n~~G~i~dl~~ 317 (985)
+. +||+|++++..|++. .+..+++..|++++.++. +++++ +++ ++++|++.+| |++|.+.|+++
T Consensus 74 -~~--~gd~vi~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~ 148 (384)
T 3zrp_A 74 -LK--PNDKILVVSNGVFGD--RWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKD 148 (384)
T ss_dssp -CC--TTCEEEEECSSHHHH--HHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHH
T ss_pred -cC--CCCEEEEecCCcchH--HHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHH
Confidence 23 889999999888763 233445678999988864 34555 555 7999999987 78999999999
Q ss_pred HHHHHHhCCcEEEEEeccccccCCC-CCCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcC-CCceeeeeecC
Q 001990 318 FIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMM-PGRIVGVSIDS 394 (985)
Q Consensus 318 I~~~a~~~galliV~a~~~alg~l~-~p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~l-p~~~vG~s~d~ 394 (985)
|.++|+++|+++++| +..+.+... ...++|+|+++++. |+|++ ++++|++++++++++.+ .+..
T Consensus 149 i~~l~~~~~~~li~D-~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~-----~~g~g~~~~~~~~~~~~~~~~~------- 215 (384)
T 3zrp_A 149 VINKIRKYVELIVVD-GVSSVGAEEVKAEEWNVDVYLTASQKALGS-----AAGLGLLLLSPKALSILDSQNS------- 215 (384)
T ss_dssp HHHHHGGGEEEEEEE-CTTTTTTSCCCTTTTTCSEEEEETTSTTCC-----CSSEEEEEECHHHHHHHHHCCC-------
T ss_pred HHHHHHhcCCEEEEE-CcccccCccccccccCCCEEEecCcccccC-----CCceEEEEECHHHHHHhcCCCC-------
Confidence 999999999999995 344555443 34568999999998 77753 35689999999887766 3210
Q ss_pred CCCcceEEecccccc-ccccc------ccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCE
Q 001990 395 SGKPALRVAMQTREQ-HIRRD------KATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 395 ~g~~~~~l~l~tre~-~~rre------~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~ 467 (985)
..++.+++..... ..+++ .||.|+ ....++.+++ .++..+|++++.++..++++++.+.|+++| +
T Consensus 216 --~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~a~~~al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~ 287 (384)
T 3zrp_A 216 --IAGYYLDLRNWLPVMRGAEEGKAAYFATPPV---HVILQLAEAF--RLIEKEGIENRIKRHTMVASAIRAGLEALG-L 287 (384)
T ss_dssp --SCCSTTCHHHHHHHHHHHHTTCCCCSSCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-C
T ss_pred --CCcccccHHHHHHHHHhhcccCCCcCCCCCH---HHHHHHHHHH--HHHHhcCHHHHHHHHHHHHHHHHHHHHHCC-C
Confidence 0112221111000 01111 134444 3344444444 455556899999999999999999999986 8
Q ss_pred EEcCCC----CcceEEEecCC--HHHHHHHHHHcCceeeeec---CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 468 EVQGLP----FFDTVKVKCAD--AHAIASAAYKIEMNLRVVD---SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 468 ~~~~~~----~~~~~~i~~~~--~~~l~~~L~~~Gi~~~~~~---~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
++.... ....+.+..++ ..++.+.|.++||.++... .+.+|++++.++|++|+++++++|..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~ 358 (384)
T 3zrp_A 288 EIVARRPESYSNTVTGVILKVADPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIER 358 (384)
T ss_dssp CBSCSSGGGBCSSEEEEECSSSCHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred eEccCcccccCccEEEEECCCCCHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHH
Confidence 876432 12234566664 8899999999999886432 17799999999999999999999974
No 75
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.85 E-value=5.2e-20 Score=209.91 Aligned_cols=314 Identities=11% Similarity=0.027 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHHhCCC-----ccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCC--CCCcHHHHHhcCcEE
Q 001990 632 EMFNNLGEWLCTITGFD-----SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSA--HGTNPATAAMCGMKI 704 (985)
Q Consensus 632 ~~~~el~~~la~l~G~~-----~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~--Hg~~~~~~~~~G~~v 704 (985)
....+++++++++++.. ...+++++|++++..++.++. +...++++||+++.. |......++..|+++
T Consensus 38 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~-----~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~ 112 (385)
T 2bkw_A 38 SIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFI-----LSKAPNKNVLVVSTGTFSDRFADCLRSYGAQV 112 (385)
T ss_dssp HHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHS-----CTTCSCCEEEEECSSHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHh-----ccCCCCCeEEEEcCCcchHHHHHHHHHcCCce
Confidence 34566788888888764 223566777776654444331 001356888876432 222123456789999
Q ss_pred EEEeC-CCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHc--CCEEEEEccccccccCCCCCC
Q 001990 705 VSVGT-DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDN--GGQVYMDGANMNAQVGLTSPG 780 (985)
Q Consensus 705 ~~v~~-~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~--g~lliVD~a~~~~~~g~~~~g 780 (985)
+.+++ +.++.+|+++|++++++ +++++|++++| |++|.+. |+++|+++|+++ |+++|+|++|..+...+ ...
T Consensus 113 ~~v~~~~~~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~-~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~-~~~ 188 (385)
T 2bkw_A 113 DVVRPLKIGESVPLELITEKLSQ--NSYGAVTVTHVDTSTAVLS-DLKAISQAIKQTSPETFFVVDAVCSIGCEEF-EFD 188 (385)
T ss_dssp EEECCSSTTSCCCHHHHHHHHHH--SCCSEEEEESEETTTTEEC-CHHHHHHHHHHHCTTSEEEEECTTTTTTSCC-CTT
T ss_pred EEEecCCCCCCCCHHHHHHHHhc--CCCCEEEEEccCCCcCeEc-CHHHHHHHHHhhCCCCEEEEECccccCCccc-ccc
Confidence 99999 87889999999999983 37889999988 5799998 899999999999 99999999996443222 234
Q ss_pred cCCCcEEEeCCcccccccCCCCCCcceeeeecccccC-cC------CCCccccCCCCC---CCCCCCCCCCcccccchhh
Q 001990 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP-FL------PSHPVVSTGGIP---APEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 781 ~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~-~l------pg~~~g~~~~~~---~~~~~~~t~~i~s~~~g~~ 850 (985)
.+++|++++|+||+|+ |++|+|++++++++++ .+ +....+...... .+....++.....+ .+.
T Consensus 189 ~~~~d~~~~s~~K~~~-----~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 261 (385)
T 2bkw_A 189 EWGVDFALTASQKAIG-----APAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFAT--PPV 261 (385)
T ss_dssp TTTCSEEEEESSSTTC-----CCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSC--CCH
T ss_pred ccCceEEEecCccccc-----cCCcceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCC--CCH
Confidence 5689999999999984 3467899999877654 33 111111000000 00000000000000 011
Q ss_pred hHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHH-hccCCeeEcCCC--C-ceeEEEEEEecCccccCCCCHHHHHHH
Q 001990 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRL-EKHYPILFRGVN--G-TVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 851 ~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L-~~~~~i~~~g~~--~-~~~~~~vv~~~~~~~~~g~~~~~l~~~ 926 (985)
..+.++.+.+..+...|+.+..++..++++++.+.| ++. .+....+. . ...+.+.+.++ +..++.+.
T Consensus 262 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 332 (385)
T 2bkw_A 262 QLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL-QLTSVSRYPSNMSAHGLTAVYVA--------DPPDVIAF 332 (385)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT-CCEESSCSSSTTBCSSCEEEECS--------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc-CceecccCcccccCCceEEEecC--------CHHHHHHH
Confidence 122223344555544567777778889999999999 762 33222111 0 11223445543 26789999
Q ss_pred HHHCCCccCCCCC-C-CCCEEEEe-ccC---CCCHHhhchHHHHHHHHHHHHH
Q 001990 927 LMDYGFHGPTMSW-P-VPGTLMIE-PTE---SESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 927 L~e~Gi~~~~~~~-p-v~~~lris-~t~---~~t~eeId~~~~~i~aL~~i~~ 973 (985)
|.++||.+..... + .++.+|++ +.. .+|++|++ +++++|+++++
T Consensus 333 l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~---~~~~~l~~~~~ 382 (385)
T 2bkw_A 333 LKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMK---NCFDLIKLALQ 382 (385)
T ss_dssp HHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHH---HHHHHHHHHTT
T ss_pred HHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHH---HHHHHHHHHHH
Confidence 9999998754321 1 24789999 542 47999999 99999988754
No 76
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.85 E-value=9.2e-20 Score=206.68 Aligned_cols=284 Identities=11% Similarity=0.081 Sum_probs=195.9
Q ss_pred HHHHHHHHHHHhCCCccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCCC
Q 001990 634 FNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~~ 712 (985)
..++++++++++|.+... ++.++|++++..++.++. .++++|+++...|..+...++..|++++.+|.+++
T Consensus 69 ~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 140 (363)
T 3ffh_A 69 ASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLL--------DTTTNTVMATPTFVQYRQNALIEGAEVREIPLLQD 140 (363)
T ss_dssp CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC--------STTCEEEEEESSCHHHHHHHHHHTCEEEEEECCTT
T ss_pred hHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHHc--------cCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCCC
Confidence 457899999999987654 555666666544433321 36789999888776666667789999999999888
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHc--CCEEEEEccccccccC-CCCC----CcCCC
Q 001990 713 GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDN--GGQVYMDGANMNAQVG-LTSP----GYIGA 784 (985)
Q Consensus 713 g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~--g~lliVD~a~~~~~~g-~~~~----g~~g~ 784 (985)
+.+|+++++++++ +++++|++++| |++|.+. |+++|.++++.+ |+++++|++|.....+ .... ...+-
T Consensus 141 ~~~d~~~l~~~i~---~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 216 (363)
T 3ffh_A 141 GEHDLEGMLNAID---EKTTIVWICNPNNPTGNYI-ELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKN 216 (363)
T ss_dssp SCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCTT
T ss_pred CCcCHHHHHHhcc---cCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCCC
Confidence 9999999999997 78999999999 5799998 899999999887 9999999998622111 1011 12233
Q ss_pred cEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhc
Q 001990 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 785 Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg 864 (985)
++++.+++|+|+. +|.++|++++++++.+.+.... . +.+ . +.....++.+.+. .
T Consensus 217 ~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~l~~~~------------~--~~~--~----~~~~~~~~~~~l~--~ 270 (363)
T 3ffh_A 217 LIITRTFSKIYGL----ASARVGYGIADKEIIRQLNIVR------------P--PFN--T----TSIGQKLAIEAIK--D 270 (363)
T ss_dssp EEEEEESSSTTCC----SSCCCEEEEECHHHHHHHHHTC------------C--SCC--C----BHHHHHHHHHHHH--C
T ss_pred EEEEeechhhhcC----chhceeeeecCHHHHHHHHHhC------------C--CCC--C----CHHHHHHHHHHhc--C
Confidence 4777888898843 4667899999887765543110 0 011 1 1122222333343 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-CCCCC
Q 001990 865 SKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-WPVPG 943 (985)
Q Consensus 865 ~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~-~pv~~ 943 (985)
.+.+.+..++..++++++.+.|++...+....+.+. .+.++++ .+..++.+.|.++||.+.... +..++
T Consensus 271 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~---~~~~~~~-------~~~~~~~~~l~~~gi~v~~g~~~~~~~ 340 (363)
T 3ffh_A 271 QAFIGECRTSNANGIKQYEAFAKRFEKVKLYPANGN---FVLIDLG-------IEAGTIFSYLEKNGYITRSGAALGFPT 340 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCCSS---EEEEECS-------SCHHHHHHHHHHTTEECEETTTTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCceECCCCCe---EEEEECC-------CCHHHHHHHHHHCCeEEEeCccCCCCC
Confidence 245666777778888999999987333322222222 2445553 267899999999999875322 22368
Q ss_pred EEEEeccCCCCHHhhchHHHHHHHHHHH
Q 001990 944 TLMIEPTESESKVCHNREDLFFQILLSL 971 (985)
Q Consensus 944 ~lris~t~~~t~eeId~~~~~i~aL~~i 971 (985)
.+|++++ |++|++ +++++|+++
T Consensus 341 ~iRis~~---~~~~i~---~~~~~l~~~ 362 (363)
T 3ffh_A 341 AVRITIG---KEEDNS---AVIALLEKL 362 (363)
T ss_dssp EEEEECC---CHHHHH---HHHHHHHHH
T ss_pred eEEEECC---CHHHHH---HHHHHHHHh
Confidence 9999986 999999 999999875
No 77
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.85 E-value=1.6e-19 Score=205.43 Aligned_cols=324 Identities=14% Similarity=0.072 Sum_probs=219.4
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHHHHHHHHHhhCCCCc-ceee-ccchHHHHHHHHHHh
Q 001990 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMS-NASL-LDEGTAAAEAMAMCN 248 (985)
Q Consensus 171 lG~g~~~~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g~~~~-~~sl-~~~~ta~~ea~~~a~ 248 (985)
++.| |..+|+.+.+++.+.. .. .+.+ +..+...++++.+++++|.+.. +..+ .+|||.++++++.++
T Consensus 23 ~~pg--p~~~~~~v~~a~~~~~--~~---~~~~----~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~ 91 (376)
T 3f0h_A 23 FTVG--PVMSSEEVRAIGAEQV--PY---FRTT----EFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNC 91 (376)
T ss_dssp CSSS--SCCCCHHHHHHHTSCC--CC---CSSH----HHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHH
T ss_pred ecCC--CCCCcHHHHHHhcCCC--CC---CCCH----HHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhc
Confidence 4555 4558888876654422 11 1222 2336667888999999999753 4444 678898888877665
Q ss_pred hhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHH
Q 001990 249 NIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDF 318 (985)
Q Consensus 249 ~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~--------~~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I 318 (985)
. ++||+||++...+.+.... ..+...|++++.++. +++++ +++++++|++++| |.+|.+.|+++|
T Consensus 92 ~---~~gd~vi~~~~~~~~~~~~--~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i 166 (376)
T 3f0h_A 92 F---TKKDKVLVIDGGSFGHRFV--QLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTMMI 166 (376)
T ss_dssp C---CTTCCEEEEESSHHHHHHH--HHHHHTTCCEEEEECCTTCCCCHHHHHTTTTSCCCEEEEESEETTTTEECCHHHH
T ss_pred c---CCCCeEEEEeCChhhHHHH--HHHHHcCCceEEEeCCCCCCCCHHHHHHhhccCceEEEEecccCCcceecCHHHH
Confidence 2 3789999888655443211 223345777766543 45666 7788999999987 789999999999
Q ss_pred HHHHHhCCcEEEEEeccccccCCC-CCCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCC
Q 001990 319 IKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSG 396 (985)
Q Consensus 319 ~~~a~~~galliV~a~~~alg~l~-~p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g 396 (985)
+++|+++|+++++|. ..+.+... ...++|+|++++++ |+|++ +||+|++++++++.+.+.....
T Consensus 167 ~~l~~~~~~~li~D~-~~~~~~~~~~~~~~~~d~~~~s~~K~l~~-----~~G~g~~~~~~~~~~~~~~~~~-------- 232 (376)
T 3f0h_A 167 GEFCKKNNMFFVCDC-VSAFLADPFNMNECGADVMITGSQKVLAC-----PPGISVIVLAPRGVERVEKSKV-------- 232 (376)
T ss_dssp HHHHHHTTCEEEEEC-TTTTTTSCCCHHHHTCSEEEEETTTTTCC-----CSSCEEEEECHHHHHHHHTCCC--------
T ss_pred HHHHHHcCCEEEEEc-CccccCccccccccCccEEEecCcccccC-----CCceEEEEECHHHHHHhhcCCC--------
Confidence 999999999999953 44544432 22457899999998 87753 4568999999988776532111
Q ss_pred CcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCC-C
Q 001990 397 KPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-F 474 (985)
Q Consensus 397 ~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-~ 474 (985)
+++.+.+....+.. ...+|.+.+......++.+++ .++..+ |++++.++..++++++++.|+++| +++.... .
T Consensus 233 -~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~al--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~ 307 (376)
T 3f0h_A 233 -RTMYFDLKDALKNQ-ERGQTPFTPAVGILLQINERL--KEIKKHGGADAEVARIASQAADFRAKIKDLP-FELVSESPA 307 (376)
T ss_dssp -CCSTTCHHHHHHHH-TTTCCSSCCCHHHHHHHHHHH--HHHHHTTHHHHHHHHHHHHHHHHHHHTTTSS-EEECCSSBB
T ss_pred -CceeecHHHHHhhc-ccCCCCCCCcHHHHHHHHHHH--HHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC-CccCccccC
Confidence 11111111111111 123455554444445555555 444455 789999999999999999999997 8887432 2
Q ss_pred cceEEEecCC--HHHHHHHHHHc-Cceeeee----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 475 FDTVKVKCAD--AHAIASAAYKI-EMNLRVV----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 475 ~~~~~i~~~~--~~~l~~~L~~~-Gi~~~~~----~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
...+.+..++ ..++.+.|.++ ||.++.. .++.+|++++..+|++|+++++++|..
T Consensus 308 ~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~ 369 (376)
T 3f0h_A 308 NGVTSVHPTTANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKD 369 (376)
T ss_dssp TTEEEEEESSSCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 2234444333 88999999988 9988642 357899999999999999999999974
No 78
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.85 E-value=1.9e-20 Score=214.87 Aligned_cols=294 Identities=14% Similarity=0.166 Sum_probs=204.9
Q ss_pred HHHHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCC
Q 001990 631 QEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD 710 (985)
Q Consensus 631 ~~~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~ 710 (985)
.+...++++++++++|.+. .+++++|++++..++. .+ ..++++|+++.+.|+.+...++..|.+++.+|.
T Consensus 87 ~~~~~~l~~~la~~~~~~~-~i~~~sGt~a~~~~l~---~~-----~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~- 156 (399)
T 3tqx_A 87 QTIHKELEKDISEFLGTDD-TILYSSCFDANGGLFE---TL-----LGPEDAIISDELNHASIIDGIRLCKAQRYRYKN- 156 (399)
T ss_dssp BHHHHHHHHHHHHHHTCSE-EEEESCHHHHHHTTHH---HH-----CCTTCEEEEETTCCHHHHHHHHSCCSEEEEECT-
T ss_pred chHHHHHHHHHHHHHCCCc-EEEECchHHHHHHHHH---Hh-----cCCCCEEEECCcccHHHHHHHHHcCCceeEeCC-
Confidence 3457789999999999875 5666778776644333 22 146789999999888887788899999999986
Q ss_pred CCCCCCHHHHHHHHHhcCC---CeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCC---C---C
Q 001990 711 AKGNINIEELRKAAEANRD---NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS---P---G 780 (985)
Q Consensus 711 ~~g~iDle~L~~~i~~~~~---~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~---~---g 780 (985)
+|+++|+++++++.+ ++++|++++| |++|.+. |+++|.++|+++|+++|+|++|..+..+... . +
T Consensus 157 ----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 231 (399)
T 3tqx_A 157 ----NAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIA-DLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCG 231 (399)
T ss_dssp ----TCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEEC-CHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHT
T ss_pred ----CCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcC-CHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhC
Confidence 488899999985433 7999999998 6899998 7999999999999999999998533322110 0 1
Q ss_pred -cCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHH
Q 001990 781 -YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 781 -~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~ 859 (985)
..+.|+++.++||+|+ |+.+|++++++++.+.+....... . .++.. +...++++.+.
T Consensus 232 ~~~~~di~~~s~sK~~~------g~~gG~~~~~~~~~~~~~~~~~~~---------~-~~~~~------~~~~~~~~~~~ 289 (399)
T 3tqx_A 232 VADRVDILTGTLGKALG------GASGGYTSGHKEIIEWLRNRSRPY---------L-FSNTV------APVIVATSLKV 289 (399)
T ss_dssp CTTCCSEEEEESSSSSC------SSCCEEEEECHHHHHHHHHHCHHH---------H-SSCCC------CHHHHHHHHHH
T ss_pred CCCCCcEEEecchHhcc------cCceEEEEcCHHHHHHHHHhCcce---------e-ccCCC------cHHHHHHHHHH
Confidence 1257999999999984 343499999887665442110000 0 00011 12222333444
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC
Q 001990 860 IAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS 938 (985)
Q Consensus 860 l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~ 938 (985)
+..+. +++.+..++..++++++.+.|++ ++.+. .+.+.+ +.+.++. +.+..++.+.|.++||.+....
T Consensus 290 l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~---~~~~~~~-----~~~~~~~~~~l~~~gi~v~~~~ 358 (399)
T 3tqx_A 290 LELLK-TEGPQLRKQLQENSRYFRAGMEKLGFQLV--PGNHPI---IPVMLGD-----AQLATNMADHLLQEGIYVVGFS 358 (399)
T ss_dssp HHHHH-HTHHHHHHHHHHHHHHHHHHHHHHTCCBC--CCSSSE---EEEEEEC-----HHHHHHHHHHHHHTTEECCEEC
T ss_pred HHHHh-hccHHHHHHHHHHHHHHHHHHHHcCCCcC--CCCCCE---EEEEeCC-----HHHHHHHHHHHHHCCCEEeeeC
Confidence 44432 44666777888899999999987 55543 222222 3344431 2356789999999999876433
Q ss_pred CC----CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 939 WP----VPGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 939 ~p----v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
++ ..+.+|++++..+|++|++ +++++|+++++++
T Consensus 359 ~~~~~~~~~~iRi~~~~~~~~~~i~---~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 359 YPVVPMGKARIRVQMSAVHTQQQLD---RAIEAFGQVGKKL 396 (399)
T ss_dssp TTTSCTTCEEEEEECCTTCCHHHHH---HHHHHHHHHHHHT
T ss_pred CCCCCCCCceEEEEeecCCCHHHHH---HHHHHHHHHHHHh
Confidence 32 1358999999999999999 9999999988753
No 79
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.85 E-value=8.1e-19 Score=203.07 Aligned_cols=328 Identities=16% Similarity=0.149 Sum_probs=225.3
Q ss_pred ccceecCCCCCCCCCcHHHHHHHHhCCcccccc-CCC--hhhHhhHHHHHHHHHHHHHHHhhCCCCcceeeccchHHHHH
Q 001990 166 VYKSFIGMGYYNTHVPPVILRNIMENPAWYTQY-TPY--QAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAE 242 (985)
Q Consensus 166 ~~~~~lG~g~~~~~~p~~v~~~i~~~~~~~t~~-~py--~~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~e 242 (985)
.|.++.+.+ ..|+.+.+++.+.-.-...| .|. ......+..+.+.++++.+++++|.++.++.+++|+|.+++
T Consensus 24 iyld~~~~~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~ 99 (423)
T 3lvm_A 24 IYLDYSATT----PVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDN 99 (423)
T ss_dssp EECBTTTCC----CCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHH
T ss_pred EeecCCCcC----CCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHH
Confidence 344444444 35666655555422100122 222 12345566788889999999999999888999999999988
Q ss_pred HHHHHhhh-hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCCCEeEEEEEcC-CCCee
Q 001990 243 AMAMCNNI-QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGE 311 (985)
Q Consensus 243 a~~~a~~~-~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~--------~~l~~-l~~~t~~V~v~~p-n~~G~ 311 (985)
+++.++.. ..++||+|++++..|+++...+... +..|++++.++. ++|++ +++++++|++.+| |++|.
T Consensus 100 ~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~ 178 (423)
T 3lvm_A 100 LAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQL-EREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGV 178 (423)
T ss_dssp HHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHH-HHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCB
T ss_pred HHHHHHHHhhccCCCEEEECCccchHHHHHHHHH-HHcCCEEEEeccCCCCccCHHHHHHhcCCCcEEEEEeCCCCCCcc
Confidence 88765431 1126899999999999998887654 456888888764 45666 7889999999887 68999
Q ss_pred eccHHHHHHHHHhCCcEEEEEeccccccCC-CCCCcccceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeee
Q 001990 312 VLDYGDFIKNAHANGVKVVMATDLLALTIL-KPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGV 390 (985)
Q Consensus 312 i~dl~~I~~~a~~~galliV~a~~~alg~l-~~p~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~ 390 (985)
+.|+++|.++|+++|+++++| +..+.+.. .....+|+|++++|..++. |++++|+++++++..+.+.....|.
T Consensus 179 ~~~l~~i~~l~~~~~~~li~D-ea~~~~~~~~~~~~~~~di~~~s~sK~~-----g~~g~G~~~~~~~~~~~~~~~~~~~ 252 (423)
T 3lvm_A 179 VQDIAAIGEMCRARGIIYHVD-ATQSVGKLPIDLSQLKVDLMSFSGHKIY-----GPKGIGALYVRRKPRVRIEAQMHGG 252 (423)
T ss_dssp BCCHHHHHHHHHHHTCEEEEE-CTTTTTTSCCCTTTSCCSEEEEESTTTT-----SCSSCEEEEECBTTBCCCCCSSCSS
T ss_pred ccCHHHHHHHHHHcCCEEEEE-hhhhcCCCCcChhhcCCCEEEechHHhc-----CCCCeEEEEEeccccCCCCccccCC
Confidence 999999999999999999995 34555544 2346789999999983342 3345899999987766654333221
Q ss_pred eecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEc
Q 001990 391 SIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ 470 (985)
Q Consensus 391 s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~ 470 (985)
. +..++..+|.|. ....++.+++ ..+ .+.++++.++..++++++++.|+++.++++.
T Consensus 253 ~-----------------~~~~~~~~~~~~---~~~~a~~~al--~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 309 (423)
T 3lvm_A 253 G-----------------HERGMRSGTLPV---HQIVGMGEAY--RIA-KEEMATEMERLRGLRNRLWNGIKDIEEVYLN 309 (423)
T ss_dssp C-----------------TTTTTCCSCCCH---HHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEEE
T ss_pred c-----------------ccccccCCCCCH---HHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 0 001122344443 3344444443 222 2237889999999999999999998448887
Q ss_pred CCCC---cceEEEecCC--HHHHHHHHHHcCceeeee-----------------------cCCeEEEEeccCCCHHHHHH
Q 001990 471 GLPF---FDTVKVKCAD--AHAIASAAYKIEMNLRVV-----------------------DSNTVTASFDETTTLEDVDK 522 (985)
Q Consensus 471 ~~~~---~~~~~i~~~~--~~~l~~~L~~~Gi~~~~~-----------------------~~~~lris~~~~~t~edid~ 522 (985)
..+. ...+.+..++ ..++.+.|.+ |.++.- .++.+|++++..+|++|+++
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~ 387 (423)
T 3lvm_A 310 GDLEHGAPNILNVSFNYVEGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDY 387 (423)
T ss_dssp SCSTTBCTTEEEEEETTSCHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHH
T ss_pred CCccccCCCeEEEEeCCCCHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHH
Confidence 4321 2345555554 7888888876 544321 03789999999999999999
Q ss_pred HHHHHhC
Q 001990 523 LFIVFAG 529 (985)
Q Consensus 523 ll~~l~~ 529 (985)
++++|..
T Consensus 388 ~~~~l~~ 394 (423)
T 3lvm_A 388 TIELVRK 394 (423)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999974
No 80
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.85 E-value=7.9e-21 Score=214.66 Aligned_cols=305 Identities=11% Similarity=0.029 Sum_probs=197.8
Q ss_pred cHHHHHHHHHHHHHHHhCCCc-c-ceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHH--HHHhcCcEE
Q 001990 629 GYQEMFNNLGEWLCTITGFDS-F-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA--TAAMCGMKI 704 (985)
Q Consensus 629 G~~~~~~el~~~la~l~G~~~-~-~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~--~~~~~G~~v 704 (985)
++.+...++++++++++|.+. . .+++++|++++..++.++. .+ ++++....|..+.. .++..|+++
T Consensus 40 ~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~--------~~--~~i~~~~~~~~~~~~~~~~~~g~~~ 109 (362)
T 3ffr_A 40 KFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV--------EK--KSFHCVNGSFSKRFYEFAGELGREA 109 (362)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC--------SS--EEEEEECSHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc--------CC--cEEEEcCcHHHHHHHHHHHHhCCCe
Confidence 455778899999999999853 2 4556677766644433321 23 45543332222222 345789999
Q ss_pred EEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHc-CCEEEEEccccccccCCCCCCcC
Q 001990 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDN-GGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 705 ~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~-g~lliVD~a~~~~~~g~~~~g~~ 782 (985)
+.++.+.++.+|+++|+ ++ +++++|++++| |++|.+. |+++|+++|+++ |+++++|++|..+...+ ...
T Consensus 110 ~~v~~~~~~~~d~~~l~--~~---~~~~~v~~~~~~nptG~~~-~l~~i~~la~~~p~~~li~D~a~~~~~~~~-~~~-- 180 (362)
T 3ffr_A 110 YKEEAAFGKGFYPADIT--VP---ADAEIICLTHNETSSGVSM-PVEDINTFRDKNKDALIFVDAVSSLPYPKF-DWT-- 180 (362)
T ss_dssp EEEECCTTCCCCGGGCC--CC---TTCCEEEEESEETTTTEEC-CHHHHTTSGGGSTTSEEEEECTTTTTSSCC-CTT--
T ss_pred EEEecCCCCCCCHHHHh--cc---CCccEEEEEcCCCCcceeC-CHHHHHHHHHhCCCCEEEEecccccCCccc-Chh--
Confidence 99999888899999998 44 78999999998 5799998 899999999999 99999999986433221 111
Q ss_pred CCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCcccc-CCCC-CCC-----CCC-CCCCCcccccchhhhHHH
Q 001990 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVS-TGGI-PAP-----EKS-QPLGTIAAAPWGSALILP 854 (985)
Q Consensus 783 g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~-~~~~-~~~-----~~~-~~t~~i~s~~~g~~~~~~ 854 (985)
.+|++++++||+|+ |++|+|++++++++.+.+.....|+ .... ... ..+ ..+.... ......
T Consensus 181 ~~d~~~~s~~K~~~-----~~~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 250 (362)
T 3ffr_A 181 KIDSVFFSVQKCFG-----LPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETP-----NAMNIF 250 (362)
T ss_dssp SCSEEEEETTSTTC-----CCSCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCC-----CHHHHH
T ss_pred HCcEEEEecccccC-----CCCceEEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCc-----hHHHHH
Confidence 28999999999994 3467899999877654332111000 0000 000 000 0001111 111122
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCC--CceeEEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001990 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVN--GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 855 ~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~--~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi 932 (985)
++.+.+..+..+|+.+..++..++++++.+.|++...+....+. ......+.+.++ + +..++.+.|.++||
T Consensus 251 ~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~l~~~gi 323 (362)
T 3ffr_A 251 LLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTT------M-LPGEINKILEPFDM 323 (362)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEES------S-CHHHHHHHHGGGTE
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecC------C-CHHHHHHHHHHCCe
Confidence 23344555556677788888889999999999873233222210 011223445553 3 78899999999999
Q ss_pred ccCCCCCC-CCCEEEEeccCCCCHHhhchHHHHHHHHHHHH
Q 001990 933 HGPTMSWP-VPGTLMIEPTESESKVCHNREDLFFQILLSLT 972 (985)
Q Consensus 933 ~~~~~~~p-v~~~lris~t~~~t~eeId~~~~~i~aL~~i~ 972 (985)
.+.....+ .++.+|++++..+|++|++ +++++|+++.
T Consensus 324 ~~~~g~~~~~~~~iRis~~~~~~~e~i~---~l~~~l~~~~ 361 (362)
T 3ffr_A 324 AVGAGYGSKKETQIRIANFPAHSLEQVH---KLVQTLKEKI 361 (362)
T ss_dssp EEEECSGGGTTTEEEEECCTTSCHHHHH---HHHHHHHHHT
T ss_pred EEecCccccCCCEEEEECCCCCCHHHHH---HHHHHHHHHh
Confidence 87532111 2578999999999999999 9999998763
No 81
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.84 E-value=7.9e-20 Score=209.18 Aligned_cols=303 Identities=13% Similarity=0.101 Sum_probs=200.4
Q ss_pred hcHHHHHHHHHHHHHHHhCCC--ccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEE
Q 001990 628 QGYQEMFNNLGEWLCTITGFD--SFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~~--~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v 704 (985)
+|..++.+.+.+++.+.+|.+ ... ++.++|++++..++.++. .++++|++++..|..+...++..|+++
T Consensus 67 ~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~ 138 (388)
T 1j32_A 67 AGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMI--------EPGDEVIIPAPFWVSYPEMVKLAEGTP 138 (388)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEESSCCTHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhc--------CCCCEEEEcCCCChhHHHHHHHcCCEE
Confidence 466666777777777777753 333 455666666544433321 367899999988877777788899999
Q ss_pred EEEeCCC--CCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccccc-C--C
Q 001990 705 VSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQV-G--L 776 (985)
Q Consensus 705 ~~v~~~~--~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~--~di~eI~~la~~~g~lliVD~a~~~~~~-g--~ 776 (985)
+.+|.++ ++.+|+++|+++++ +++++|++++| |++|.+. .++++|+++|+++|+++|+|+++..... + .
T Consensus 139 ~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~ 215 (388)
T 1j32_A 139 VILPTTVETQFKVSPEQIRQAIT---PKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQH 215 (388)
T ss_dssp EEECCCGGGTTCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC
T ss_pred EEecCCcccCCCCCHHHHHHhcC---cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCC
Confidence 9999875 46799999999997 68999999999 5699984 2599999999999999999999853211 1 0
Q ss_pred CCCCc-----CCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhh
Q 001990 777 TSPGY-----IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 777 ~~~g~-----~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~ 851 (985)
..... .+.|+++.|+||+|+. .|.++|++++++++.+.+..... ..+.+.+ ..
T Consensus 216 ~~~~~~~~~~~~~~~~~~s~sK~~~~----~G~r~G~~~~~~~~~~~l~~~~~------------~~~~~~~------~~ 273 (388)
T 1j32_A 216 LSIGAASPEAYERSVVCSGFAKTYAM----TGWRVGFLAGPVPLVKAATKIQG------------HSTSNVC------TF 273 (388)
T ss_dssp CCGGGSCHHHHHTEEEEEESTTTTTC----TTTCCEEEECCHHHHHHHHHHHH------------TTTCSCC------HH
T ss_pred CCHHHccccccCCEEEEeechhccCC----cccceEEEEeCHHHHHHHHHHHh------------hcccCCC------HH
Confidence 01111 4578999999999853 35668999998876654321100 0111111 11
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHH-C
Q 001990 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD-Y 930 (985)
Q Consensus 852 ~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e-~ 930 (985)
...++.+++. .+.+.+.+..++..++++++.+.|++...+.+..+.+..+ +.++++. .+.+..++.+.|.+ +
T Consensus 274 ~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~l~~~~ 346 (388)
T 1j32_A 274 AQYGAIAAYE-NSQDCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFY--MFPSIAK----TGRSSLDFCSELLDQH 346 (388)
T ss_dssp HHHHHHHHHH-SCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTE--ECCBCGG----GTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeEE--EEEecCC----CCCCHHHHHHHHHHhC
Confidence 1222333343 2344566677777888899999998621222222222211 2233321 13577889999986 7
Q ss_pred CCccCCC-CCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 931 GFHGPTM-SWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 931 Gi~~~~~-~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
||.+... .+..++.+|++++ +++++++ ++++.|+++++++
T Consensus 347 gi~v~~g~~~~~~~~iRis~~--~~~~~i~---~~~~~l~~~l~~~ 387 (388)
T 1j32_A 347 QVATVPGAAFGADDCIRLSYA--TDLDTIK---RGMERLEKFLHGI 387 (388)
T ss_dssp CEECEEGGGGTCTTBEEEECC--SCHHHHH---HHHHHHHHHHHHH
T ss_pred CEEEeChhhhCCCCcEEEEec--CCHHHHH---HHHHHHHHHHHHh
Confidence 9987432 1222578999986 7899999 9999999887654
No 82
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.84 E-value=1.4e-18 Score=197.94 Aligned_cols=289 Identities=15% Similarity=0.136 Sum_probs=205.8
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhh-cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001990 207 QGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ-KGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~-~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~ 285 (985)
.+..+.+.++++.+|+++|.++.++.+++|+|.++++++.++... .++||+|+++...|+++...+... +..|.+++.
T Consensus 40 ~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~-~~~g~~~~~ 118 (384)
T 1eg5_A 40 IEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYL-SMKGFKVKY 118 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHH-HHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHHHH-HhcCCEEEE
Confidence 344566778999999999998888989999999988887766420 127899999999999988877532 346888888
Q ss_pred eCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCC--cEEEEEeccccccCCC-CCCcccceEE
Q 001990 286 SDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANG--VKVVMATDLLALTILK-PPGELGADIV 352 (985)
Q Consensus 286 ~~~--------~~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~g--alliV~a~~~alg~l~-~p~~~GaDi~ 352 (985)
++. ++|++ +++++++|++++| |.+|.+.|+++|.++|+++| +++++| +..+++... +..++++|++
T Consensus 119 v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~D-ea~~~~~~~~~~~~~~~di~ 197 (384)
T 1eg5_A 119 VPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVD-AVQTIGKIPFSLEKLEVDYA 197 (384)
T ss_dssp CCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEE-CTTTTTTSCCCCTTTCCSEE
T ss_pred EccCCCCccCHHHHHHHhCCCCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEE-hhhhcCCcccCchhcCCCEE
Confidence 764 45666 7788999999988 68999999999999999999 999995 344554332 2345789999
Q ss_pred EecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHH
Q 001990 353 VGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMA 431 (985)
Q Consensus 353 v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~a 431 (985)
++|. |.++ | ||+|++++++++ .+...+.++ + +..+...++.|. ....++.+
T Consensus 198 ~~s~sK~~g-~-----~G~G~~~~~~~~--~~~~~~~~~-----~------------~~~~~~~~~~~~---~~~~a~~~ 249 (384)
T 1eg5_A 198 SFSAHKFHG-P-----KGVGITYIRKGV--PIRPLIHGG-----G------------QERGLRSGTQNV---PGIVGAAR 249 (384)
T ss_dssp EEEGGGGTS-C-----TTCEEEEECTTS--CCCCSBCSS-----C------------TTTTTBCSCCCH---HHHHHHHH
T ss_pred EecHHHhcC-C-----CceEEEEEcCCC--ccccccccC-----c------------ccccccCCCCCh---HHHHHHHH
Confidence 9998 6433 2 347999998765 121111110 0 000112233332 22333333
Q ss_pred HHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCC---CcceEEEecCC--HHHHHHHHHHcCceeeee----
Q 001990 432 AMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP---FFDTVKVKCAD--AHAIASAAYKIEMNLRVV---- 502 (985)
Q Consensus 432 a~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~---~~~~~~i~~~~--~~~l~~~L~~~Gi~~~~~---- 502 (985)
++ .. ..++++++.++..++++++.+.|++.| +++...+ ....+.+..++ ..++.+.|.++||.+...
T Consensus 250 al--~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~ 325 (384)
T 1eg5_A 250 AM--EI-AVEELSEAAKHMEKLRSKLVSGLMNLG-AHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIYVSTSSACT 325 (384)
T ss_dssp HH--HH-HHHTHHHHHHHHHHHHHHHHHHHHTTT-CEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEECBC-----
T ss_pred HH--HH-HHHhHHHHHHHHHHHHHHHHHHhCCCC-eEEeCCcccCCCCEEEEEeCCCCHHHHHHHHhhCCeEEecccccc
Confidence 33 22 235688899999999999999999876 8886432 22345555554 788999999999987541
Q ss_pred -------------------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 503 -------------------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -------------------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
..+.+|++++.++|++|+++++++|..
T Consensus 326 ~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 371 (384)
T 1eg5_A 326 SKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEE 371 (384)
T ss_dssp -------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 026899999999999999999999974
No 83
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.84 E-value=1.1e-18 Score=205.96 Aligned_cols=358 Identities=10% Similarity=0.016 Sum_probs=228.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCc---cceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHH
Q 001990 139 MKFSKFDEGLTESQMIEHMQKLASMNKV---YKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLN 215 (985)
Q Consensus 139 ~~lp~~~~~~se~e~~~~~~~~~~~n~~---~~~~lG~g~~~~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e 215 (985)
..+| ..+.+-.++++++.++...+.. ..+|.|.-+-+...|+.+.+.+.+ .+-+....| ..+.+..+...+
T Consensus 49 ~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~n~~~~~~--~~~p~~~~lE~~ 122 (481)
T 4e1o_A 49 ESAP--EDPDSWDSIFGDIERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLAD--AINCLGFTW--ASSPACTELEMN 122 (481)
T ss_dssp SSCC--SSCCCHHHHHHHHHHHTGGGCCCTTSTTBCSSSCCCCCHHHHHHHHHHH--HHCCCCSST--TTCHHHHHHHHH
T ss_pred CCCC--CCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeCCCCCCHHHHHHHHHHH--HhCcccCCc--CCCcHHHHHHHH
Confidence 3567 5788999999999997654321 223444333233456665433221 011111222 335566777778
Q ss_pred HHHHHHHhhCCCCc----------ceeeccchHHHHHHHHHHhhhhc----------------CCCCEEEEcCCCChhHH
Q 001990 216 FQTMIADLTGLPMS----------NASLLDEGTAAAEAMAMCNNIQK----------------GKKKTFIIASNCHPQTI 269 (985)
Q Consensus 216 ~q~~ia~L~g~~~~----------~~sl~~~~ta~~ea~~~a~~~~~----------------~~g~~Vlv~~~~h~s~~ 269 (985)
..+++++++|.+.. ...+++|||.+...++++.+... .++++|++++..|.++.
T Consensus 123 v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~ 202 (481)
T 4e1o_A 123 VMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVE 202 (481)
T ss_dssp HHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHH
T ss_pred HHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHH
Confidence 88899999999864 45677888877766665543210 14678999999999999
Q ss_pred HHHHHhhcCCCeEEEEeCc--------hhhhc-cCCC------EeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEe
Q 001990 270 DICITRADGFDIKVVVSDL--------KDIDY-KSGD------VCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMAT 333 (985)
Q Consensus 270 ~~~~~~a~~~gi~v~~~~~--------~~l~~-l~~~------t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a 333 (985)
+.++. .|++++.++. ++|++ +.++ +.+|+++.+ |.+|.++|+++|+++||++|++++||+
T Consensus 203 ~~~~~----~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDa 278 (481)
T 4e1o_A 203 KAGLI----SLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDA 278 (481)
T ss_dssp HHHHH----HTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHh----CCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeeh
Confidence 98753 3778887764 45655 4332 677888876 579999999999999999999999954
Q ss_pred ccccccCCCCC----Cccc---ceEEEecC-ccccccCCCCCCceEEEEEchh-hHh-cCC---CceeeeeecCCCCcce
Q 001990 334 DLLALTILKPP----GELG---ADIVVGSA-QRFGVPMGYGGPHAAFLATSQE-YKR-MMP---GRIVGVSIDSSGKPAL 400 (985)
Q Consensus 334 ~~~alg~l~~p----~~~G---aDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~-~~~-~lp---~~~vG~s~d~~g~~~~ 400 (985)
.++.+.+..+ ...| +|.++.++ |+|+.|. ++|+++++++ .++ .+. +.+.+. ...+..
T Consensus 279 -A~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~-----g~g~l~~~~~~~l~~~~~~~~~yl~~~--~~~~~~-- 348 (481)
T 4e1o_A 279 -AYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHF-----DCTGFWVKDKYKLQQTFSVNPIYLRHA--NSGVAT-- 348 (481)
T ss_dssp -TTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS-----SCEEEEESBHHHHHTTTCCCCGGGCCT--TTTTSC--
T ss_pred -hhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCC-----ceEEEEEeCHHHHHHHhcCCchhccCc--ccCCCC--
Confidence 2333322111 1124 59999999 7788774 3567778764 332 221 111110 000000
Q ss_pred EEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEE
Q 001990 401 RVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKV 480 (985)
Q Consensus 401 ~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i 480 (985)
+. . +..-+.++. ....++.+++ ..+|.+|++++.++..++++++++.|++++|++++.++....+.|
T Consensus 349 --~~--~--~~~~~~~r~-----~~~l~~~~al--~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f 415 (481)
T 4e1o_A 349 --DF--M--HWQIPLSRR-----FRSVKLWFVI--RSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVF 415 (481)
T ss_dssp --CG--G--GGSSSSCCC-----CTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCCCSSEEEE
T ss_pred --Cc--c--cccccCCCC-----ccHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEE
Confidence 00 0 000011111 1122333333 567889999999999999999999999984499986665667777
Q ss_pred ecCC----HHHHHHHHHHcCc-eeeee--c-CCeEEEEeccCC-CHHHHHHHHHHHhC
Q 001990 481 KCAD----AHAIASAAYKIEM-NLRVV--D-SNTVTASFDETT-TLEDVDKLFIVFAG 529 (985)
Q Consensus 481 ~~~~----~~~l~~~L~~~Gi-~~~~~--~-~~~lris~~~~~-t~edid~ll~~l~~ 529 (985)
+.++ ..++.++|.++|+ .+... . ...+|++++..+ |++||++++++|..
T Consensus 416 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~ 473 (481)
T 4e1o_A 416 RLKGPNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRD 473 (481)
T ss_dssp EESSCHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EeCCchHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 7643 6789999998885 33322 1 357999988655 89999999999974
No 84
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.84 E-value=2.4e-19 Score=201.59 Aligned_cols=318 Identities=14% Similarity=0.082 Sum_probs=216.6
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHHHHHHHHHhhCCC--CcceeeccchHHHHHHHHHHh
Q 001990 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLP--MSNASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 171 lG~g~~~~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g~~--~~~~sl~~~~ta~~ea~~~a~ 248 (985)
++.|.+ ..|+.+.+++.+.. .. + +.+ ...+...++++.+++++|.+ ..++.+++|+|.+++.++.++
T Consensus 4 ~~~gp~--~~~~~v~~a~~~~~---~~-~-~~~----~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~ 72 (353)
T 2yrr_A 4 LTPGPT--PIPERVQKALLRPM---RG-H-LDP----EVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANL 72 (353)
T ss_dssp CSSSSC--CCCHHHHGGGGSCC---CC-T-TCH----HHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTC
T ss_pred CCCCCC--CCCHHHHHHHhccc---cc-c-cCH----HHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHh
Confidence 456644 46777765554422 21 1 122 23456778999999999986 556778899998877766554
Q ss_pred hhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHH
Q 001990 249 NIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGD 317 (985)
Q Consensus 249 ~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~--------~~l~~-l~~-~t~~V~v~~p-n~~G~i~dl~~ 317 (985)
. + |+|++++..|+++ .+...++..|++++.++. +++++ +++ ++++|++++| |++|.+.|+++
T Consensus 73 ~----~-d~vl~~~~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~ 145 (353)
T 2yrr_A 73 D----R-GPVLVLVNGAFSQ--RVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEA 145 (353)
T ss_dssp S----C-CCEEEEECSHHHH--HHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHH
T ss_pred c----C-CcEEEEcCCCchH--HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHHH
Confidence 2 4 8899999999986 233334456777777653 45555 555 7899999988 68999999999
Q ss_pred HHHHHHhCCcEEEEEeccccccCCC-CCCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCC
Q 001990 318 FIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSS 395 (985)
Q Consensus 318 I~~~a~~~galliV~a~~~alg~l~-~p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~ 395 (985)
|.++|+++|+++++| +..+++... +..++|+|++++++ |++++ +||+|++++++++++.+.. ..+
T Consensus 146 i~~l~~~~~~~li~D-~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~-----~~g~G~~~~~~~~~~~l~~-~~~------ 212 (353)
T 2yrr_A 146 IGALAKEAGALFFLD-AVTTLGMLPFSMRAMGVDYAFTGSQKCLSA-----PPGLAPIAASLEARKAFTG-KRG------ 212 (353)
T ss_dssp HHHHHHHHTCEEEEE-CTTTTTTSCCCHHHHTCSEEECCTTSTTCC-----CSSCEEEEECHHHHHHCCC-CSC------
T ss_pred HHHHHHHcCCeEEEE-cCcccccccccccccCceEEEecCcccccC-----CCceEEEEECHHHHHHhcc-CCC------
Confidence 999999999999995 344555332 22456899999998 76753 3567999999998877731 101
Q ss_pred CCcceEEeccc--ccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCC
Q 001990 396 GKPALRVAMQT--REQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP 473 (985)
Q Consensus 396 g~~~~~l~l~t--re~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~ 473 (985)
+.+.... ..+..++..+|.|. ....++.+++ ..+..+|++++.++..++++++++.|+++| +++..++
T Consensus 213 ----~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~ 282 (353)
T 2yrr_A 213 ----WYLDLARVAEHWERGGYHHTTPV---LLHYALLEAL--DLVLEEGVAARERRAREVYAWVLEELKARG-FRPYPKA 282 (353)
T ss_dssp ----STTCHHHHHHHHTTCCCSSCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CEESCSS
T ss_pred ----ccccHHHHhhhhhcCCCCCCCCH---HHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHCC-CccccCc
Confidence 1010000 00001122344443 2333444443 444456789999999999999999999986 8887532
Q ss_pred --CcceEEEecC-C--HHHHHHHHHHcCceeeee----cCCeEEEEeccCCCHHHHH-HHHHHHhC
Q 001990 474 --FFDTVKVKCA-D--AHAIASAAYKIEMNLRVV----DSNTVTASFDETTTLEDVD-KLFIVFAG 529 (985)
Q Consensus 474 --~~~~~~i~~~-~--~~~l~~~L~~~Gi~~~~~----~~~~lris~~~~~t~edid-~ll~~l~~ 529 (985)
....+.+..+ + ..++.++|.++||.+... .++.+|++++.+++++|++ +++++|..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~ 348 (353)
T 2yrr_A 283 SPLPTVLVVRPPEGVDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDR 348 (353)
T ss_dssp SBCTTEEEEECCTTCCHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHH
Confidence 1223456664 2 789999999999988642 2578999999999999999 99999873
No 85
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.84 E-value=6.1e-20 Score=215.53 Aligned_cols=298 Identities=15% Similarity=0.142 Sum_probs=183.5
Q ss_pred HHHHHHHHHHhCCCc----cceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcH---H-----HHHhcCc
Q 001990 635 NNLGEWLCTITGFDS----FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP---A-----TAAMCGM 702 (985)
Q Consensus 635 ~el~~~la~l~G~~~----~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~---~-----~~~~~G~ 702 (985)
..+++++++++|.+. +.++++||++|+.++++++. .++|+||+++..|+.+. . .+...|.
T Consensus 103 ~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~--------~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~ 174 (490)
T 2a7v_A 103 LLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL--------QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSI 174 (490)
T ss_dssp HHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC--------CSCEECCC-------------------------
T ss_pred HHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHc--------CCCCEecccCccccccccchhhhcchhHHHcCC
Confidence 355699999999987 46778889888766655542 47899999988887542 1 2234554
Q ss_pred E--EEEEeCC-CCCCCCHHHHHHHHHhcCCCeEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccC---C
Q 001990 703 K--IVSVGTD-AKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG---L 776 (985)
Q Consensus 703 ~--v~~v~~~-~~g~iDle~L~~~i~~~~~~t~~Vvi~~pn~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g---~ 776 (985)
. ++.++++ +++.+|+++|++++.++ ++++|+++.|+ +|... |+++|+++|+++|++|++|++|..++.. .
T Consensus 175 ~~~~~~~~vd~~~~~iD~d~le~~l~~~--~~klIi~~~s~-~~~~~-dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~ 250 (490)
T 2a7v_A 175 FFESMPYKLNPKTGLIDYNQLALTARLF--RPRLIIAGTSA-YARLI-DYARMREVCDEVKAHLLADMAHISGLVAAKVI 250 (490)
T ss_dssp ------CCBCTTTCSBCHHHHHHHHHHH--CCSEEEECCSS-CCSCC-CHHHHHHHHHHTTCEEEEECGGGHHHHHTTSS
T ss_pred eEEEEecccccccCCcCHHHHHHHHhhc--CCcEEEEcCCC-CCCcc-cHHHHHHHHHHcCCEEEEccccccccccCCcC
Confidence 4 4444455 45899999999999743 46677776654 35555 8999999999999999999999654421 1
Q ss_pred CCCCcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCc-----------CCCCccccCCCCCCCCCCCCCCCcccc
Q 001990 777 TSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPF-----------LPSHPVVSTGGIPAPEKSQPLGTIAAA 845 (985)
Q Consensus 777 ~~~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~-----------lpg~~~g~~~~~~~~~~~~~t~~i~s~ 845 (985)
..+- .++|++++++||+| +||.+|++++++++... +...+ . ... .+.+.++
T Consensus 251 ~~~~-~~aDiv~~S~hK~l------~Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i-~-------~~~---~~g~qgg 312 (490)
T 2a7v_A 251 PSPF-KHADIVTTTTHKTL------RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRI-N-------FAV---FPSLQGG 312 (490)
T ss_dssp CCGG-GTCSEEEEESSGGG------CSCSCEEEEEECSEEEEETTTEEEEECCCHHHH-H-------HHH---TTTTCCS
T ss_pred CCCC-CCCCEEEECCcccC------ccccchheeeccchhcccccccchhhHHHHHHH-H-------HHh---cccCCCC
Confidence 1222 26899999999998 46777999998753210 00000 0 000 0001111
Q ss_pred cchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHH
Q 001990 846 PWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVA 924 (985)
Q Consensus 846 ~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~ 924 (985)
+. ...+++.+ +++.....+++++..++..+++++|++.|.+ ++.+...+. ..+.+.++++. .+.+..++.
T Consensus 313 p~-~~~iaAla-~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G~~v~~~~t---~t~lv~vdl~~----~g~~~~~~~ 383 (490)
T 2a7v_A 313 PH-NHAIAAVA-VALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGT---DNHLVLVDLRP----KGLDGARAE 383 (490)
T ss_dssp CC-HHHHHHHH-HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC---SSSEEEEECTT----TTCCHHHHH
T ss_pred ch-HHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCcEEecCCC---CCeEEEEEeCC----CCCCHHHHH
Confidence 10 11122222 2233332345567778889999999999987 666543221 12446677652 357888999
Q ss_pred HHHHHCCCccCCC-----CCC-CCCEEEEecc----CCCCHHhhchHHHHHHHHHHHHHH
Q 001990 925 KRLMDYGFHGPTM-----SWP-VPGTLMIEPT----ESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 925 ~~L~e~Gi~~~~~-----~~p-v~~~lris~t----~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
+.|.+.||.++.. ..| ++..||++.. ...+++|++ +++++|.+++..
T Consensus 384 ~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~---~~~~~i~~~l~~ 440 (490)
T 2a7v_A 384 RVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFR---RVVDFIDEGVNI 440 (490)
T ss_dssp HHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHH---HHHHHHHHHHHH
T ss_pred HHHHhCCeEEecCccCCCCCCCCCCceEecccccccCCCCHHHHH---HHHHHHHHHHHh
Confidence 9999999987521 122 4578999654 346899999 999999887753
No 86
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.84 E-value=9.3e-20 Score=208.07 Aligned_cols=318 Identities=11% Similarity=0.035 Sum_probs=206.3
Q ss_pred ecCCCCCCCCCcHHHHHHHHhCCcccccc--CCCh----hhHhhHHHHHHHHHHHHHHHhhCCCC-cceee-ccchHHHH
Q 001990 170 FIGMGYYNTHVPPVILRNIMENPAWYTQY--TPYQ----AEIAQGRLESLLNFQTMIADLTGLPM-SNASL-LDEGTAAA 241 (985)
Q Consensus 170 ~lG~g~~~~~~p~~v~~~i~~~~~~~t~~--~py~----~e~sqg~l~~i~e~q~~ia~L~g~~~-~~~sl-~~~~ta~~ 241 (985)
+..+| |..+|+.|.+++.. +++.| +|.. ...++...+.+.++++.+++|+|++. ..+.+ +.++|.++
T Consensus 30 l~~ag--pt~~p~~V~~a~~~---~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~ 104 (386)
T 3qm2_A 30 NFSSG--PAMLPAEVLKLAQQ---ELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQF 104 (386)
T ss_dssp ECCSS--SCCCCHHHHHHHTC---C-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHH
T ss_pred cccCC--CCCCCHHHHHHHHH---HHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHH
Confidence 34566 44588888755443 23222 2211 11244456788999999999999965 35666 47999888
Q ss_pred HHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch-----------hhhc-cCCCEeEEEEEc-CCC
Q 001990 242 EAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK-----------DIDY-KSGDVCGVLVQY-PGT 308 (985)
Q Consensus 242 ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~~-----------~l~~-l~~~t~~V~v~~-pn~ 308 (985)
++++..+ +. ++|+|++....|-+. .|...++..| ++++++.+ +++. ++++|++|++++ .|.
T Consensus 105 n~ai~~l-~~--~gd~v~~~~~~~~~~--~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~ 178 (386)
T 3qm2_A 105 AGVPLNL-LG--DKTTADYVDAGYWAA--SAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETI 178 (386)
T ss_dssp HHHHHHH-CT--TCCEEEEEESSHHHH--HHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEECSEETT
T ss_pred HHHHHhc-cC--CCCeEEEEeCCHHHH--HHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCC
Confidence 8877665 23 778887666555443 3444567778 77766432 3444 788999998876 478
Q ss_pred Ceee-ccHHHHHHHHHhCCcEEEEEeccccccCCC-CCCcccceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCc
Q 001990 309 EGEV-LDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGR 386 (985)
Q Consensus 309 ~G~i-~dl~~I~~~a~~~galliV~a~~~alg~l~-~p~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~ 386 (985)
+|++ .|+++|+ +|++++||+ ..++|.++ +..+||+ +++++|++.+| ||+|++++++++++++++.
T Consensus 179 tG~~i~pi~~i~-----~g~~~~vDa-~qs~g~~pidv~~~~~--~~~s~hK~lGP-----~G~g~l~v~~~~~~~~~~~ 245 (386)
T 3qm2_A 179 DGIAIDETPDFG-----PEVVVTADF-SSTILSAPLDVSRYGV--IYAGAQKNIGP-----AGLTLVIVREDLLGKAHES 245 (386)
T ss_dssp TTEECCCCCCCC-----TTCCEEEEC-TTTTTSSCCCGGGCSE--EEEETTTTTCC-----TTEEEEEEEGGGCSCCCTT
T ss_pred cCEecCchhhhc-----CCCEEEEEc-ccccCCCCCCccccCE--EEEecccccCC-----CccEEEEECHHHHhhhccc
Confidence 9996 9999986 799999964 34666543 4466764 56888444235 5799999999988777542
Q ss_pred eeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHHHHHHHhcCC
Q 001990 387 IVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKLG 465 (985)
Q Consensus 387 ~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g 465 (985)
.-. + +++... +...+..+|+|+ .+++++.+++ .++..+ |++++.++..+++++++++|+++|
T Consensus 246 ~p~----------~-~~~~~~-~~~~~~~gTp~v---~~i~~l~~Al--~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~ 308 (386)
T 3qm2_A 246 CPS----------I-LDYTVL-NDNDSMFNTPPT---FAWYLSGLVF--KWLKAQGGVAAMHKINQQKAELLYGVIDNSD 308 (386)
T ss_dssp SCG----------G-GCHHHH-HHC-------CC---SHHHHHHHHH--HHHHHHTHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCc----------H-HHHHHH-hhcCCCCCCCcH---HHHHHHHHHH--HHHHHhcCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 111 1 111001 111112478888 5777777777 555566 899999999999999999999986
Q ss_pred CE-EEc-CC-CCc-ceEEEecCC---HHHHHHHHHHcCceeeee--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 466 TV-EVQ-GL-PFF-DTVKVKCAD---AHAIASAAYKIEMNLRVV--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 466 ~~-~~~-~~-~~~-~~~~i~~~~---~~~l~~~L~~~Gi~~~~~--~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+ ... ++ ... ..++|.+++ ..++.+.|.++||.++.- ..+.+|+|+..+||++|||+|+++|+.
T Consensus 309 -~~~~~~~~~~rs~~iv~f~~~~~~~~~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~ 380 (386)
T 3qm2_A 309 -FYRNDVAQANRSRMNVPFQLADNTLDKVFLEESFAAGLHALKGHRVVGGMRASIYNAMPIEGVKALTDFMID 380 (386)
T ss_dssp -SEECCBCGGGBCSSEEEEEESSGGGHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred -CcccCCCHHHcCceEEEEECCCccccHHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5 433 21 122 256777763 457778899999987542 126799999999999999999999973
No 87
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.83 E-value=2.2e-20 Score=212.14 Aligned_cols=304 Identities=9% Similarity=0.026 Sum_probs=198.6
Q ss_pred hcHHHHHHHHHHHHHHHhCCCc-c-cee-cChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHH--HHhcCc
Q 001990 628 QGYQEMFNNLGEWLCTITGFDS-F-SLQ-PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT--AAMCGM 702 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~~~-~-~~~-~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~--~~~~G~ 702 (985)
+-+.+.++++++.+++++|.+. . .++ ..+|+++. .+++.++... .++|++++....|-+++.. ++..|+
T Consensus 54 ~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~---n~a~~~l~~~---~~Gd~v~~~~~g~~~~~~~~~a~~~G~ 127 (377)
T 3e77_A 54 SDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQF---SAVPLNLIGL---KAGRCADYVVTGAWSAKAAEEAKKFGT 127 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH---HHHHHHHGGG---STTCEEEECCCSHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHH---HHHHHhccCC---CCCCeEEEEECCHHHHHHHHHHHHhCC
Confidence 3466789999999999999975 2 344 34555544 4445444211 1367888766544444443 456788
Q ss_pred EEEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCc
Q 001990 703 KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY 781 (985)
Q Consensus 703 ~v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~ 781 (985)
++++++.+.++..++++++.+++ ++|++|++++. |.+|++. |+ +|+++|++++||++|+.+...+ +..+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~i~---~~t~lV~~~h~et~tG~~~-pi-----i~~~~~~~~~vD~~q~~g~~~i-d~~~ 197 (377)
T 3e77_A 128 INIVHPKLGSYTKIPDPSTWNLN---PDASYVYYCANETVHGVEF-DF-----IPDVKGAVLVCDMSSNFLSKPV-DVSK 197 (377)
T ss_dssp EEECSCCCSSSCSCCCGGGCCCC---TTCSCEEEESEETTTTEEC-SS-----CCCCTTCCEEEECTTTTTSSCC-CGGG
T ss_pred ceEEeccCCCcCCCCChHHhccC---CCccEEEEeCccCchheEc-hh-----hhccCCCEEEEEcccccCCCCC-chhh
Confidence 88888887677778887776665 78999988875 5689999 77 4778999999999997665544 3445
Q ss_pred CCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCC---CCCCCCCCCCCcccccchhhhHHHHHHH
Q 001990 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI---PAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 782 ~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~---~~~~~~~~t~~i~s~~~g~~~~~~~A~a 858 (985)
++ ++++++||++ |+||+|++++++++.+.+++..... .+. .......+|+++.. . ..+ .+
T Consensus 198 ~~--~~~~s~~K~~------gp~G~g~l~~~~~~l~~~~~~~p~~-~~~~~~~~~~~~~~Tp~v~~----i-~~l---~~ 260 (377)
T 3e77_A 198 FG--VIFAGAQKNV------GSAGVTVVIVRDDLLGFALRECPSV-LEYKVQAGNSSLYNTPPCFS----I-YVM---GL 260 (377)
T ss_dssp CS--EEEEEGGGTT------SCTTCEEEEEETTSCSCCCTTSCGG-GCHHHHHTTTTCSSCCCHHH----H-HHH---HH
T ss_pred cC--EEEEeccccc------CCCccEEEEEcHHHHhhccCCCCch-hhHHHHhhcCCCCCCchHHH----H-HHH---HH
Confidence 54 6889999998 3468999999988876554321110 000 00112234555432 1 122 23
Q ss_pred HHHHhchh-hHHHHHHHHHHHHHHHHHHHhccCCeeEcC-CC-CceeEEEEEEecCccccCCCCH-----HHHHHHHHHC
Q 001990 859 YIAMMGSK-GLTEASKIAILNANYMAKRLEKHYPILFRG-VN-GTVAHEFIVDLRGLKNTAGIEP-----EDVAKRLMDY 930 (985)
Q Consensus 859 ~l~~lg~~-gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g-~~-~~~~~~~vv~~~~~~~~~g~~~-----~~l~~~L~e~ 930 (985)
+++.+..+ |+.++.++..+++++++++|++...+.... +. ......+.|.++ ++++ ..+.+.|.++
T Consensus 261 al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~------~~~~~~~~~~~~l~~l~~~ 334 (377)
T 3e77_A 261 VLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIG------NAKGDDALEKRFLDKALEL 334 (377)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEES------STTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcC------CCCCchhHHHHHHHHHHHC
Confidence 44555556 788888899999999999998732222111 11 111112445554 3322 3567778889
Q ss_pred CCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 931 GFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 931 Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
||.+..-. ...+++|+|+..++|+|||| +|+++|+++.++
T Consensus 335 Gi~~~~g~-~~~g~iRiS~~~~~t~edId---~l~~al~~~~~~ 374 (377)
T 3e77_A 335 NMLSLKGH-RSVGGIRASLYNAVTIEDVQ---KLAAFMKKFLEM 374 (377)
T ss_dssp TEESCBCC-TTTCSEEEECCTTSCHHHHH---HHHHHHHHHHHH
T ss_pred CcEEeCCC-CcCCEEEEECCCCCCHHHHH---HHHHHHHHHHHH
Confidence 99874321 12367999999999999999 999999998764
No 88
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.83 E-value=6e-20 Score=208.35 Aligned_cols=280 Identities=11% Similarity=0.086 Sum_probs=194.5
Q ss_pred HHHHHHHHHhCCCccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeC-CCCC
Q 001990 636 NLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT-DAKG 713 (985)
Q Consensus 636 el~~~la~l~G~~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~-~~~g 713 (985)
++++.+++++|.+... +++++|++++..++.++. .++++|+++.+.|..+...++..|++++.+|+ ++++
T Consensus 69 ~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 140 (365)
T 3get_A 69 ELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKL--------NSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNL 140 (365)
T ss_dssp HHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEECSSCCTHHHHHHHHHTCEEEECSSSSCCH
T ss_pred HHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHHh--------CCCCEEEEeCCChHHHHHHHHHcCCEEEEEecCCCCC
Confidence 7889999999987654 455666665544333321 46789999998887777777889999999998 5668
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEEEcCC-CccccccCHHHHHHHHH--HcCCEEEEEccccccc---cCC--CCC----Cc
Q 001990 714 NINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIH--DNGGQVYMDGANMNAQ---VGL--TSP----GY 781 (985)
Q Consensus 714 ~iDle~L~~~i~~~~~~t~~Vvi~~pn-~~G~i~~di~eI~~la~--~~g~lliVD~a~~~~~---~g~--~~~----g~ 781 (985)
+|+++|+++++ +++++|++++|+ ++|.+. |++++.++++ ++|+++++|++|.... .+- ..+ ..
T Consensus 141 -~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 215 (365)
T 3get_A 141 -DEFKKLYETHK---DEIKLIFLCLPNNPLGECL-DASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKE 215 (365)
T ss_dssp -HHHHHHHHHTT---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHH
T ss_pred -CCHHHHHHHhC---CCCCEEEEcCCCCCCCCCc-CHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhcc
Confidence 99999999997 889999999994 699998 7888888887 6799999999985322 111 111 12
Q ss_pred CCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHH
Q 001990 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 782 ~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~ 861 (985)
.+.++++.|+||+|+. .|.++|++++++++.+.+.... ... + . +.....++.+++.
T Consensus 216 ~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~------------~~~--~--~----~~~~~~~~~~~l~ 271 (365)
T 3get_A 216 FDNVLYLGTFSKLYGL----GGLRIGYGIANANIISAFYKLR------------APF--N--V----SNLALKAAVAAMD 271 (365)
T ss_dssp CTTEEEEEESSSTTSC----TTTCCEEEEECHHHHHHHHHHS------------CTT--C--S----CHHHHHHHHHHHT
T ss_pred CCCEEEEeecchHhcC----cchheEEEEcCHHHHHHHHHhc------------CCC--C--c----CHHHHHHHHHHhC
Confidence 3567889999999853 4678999999877765442110 000 1 1 1111222233333
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-C
Q 001990 862 MMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-W 939 (985)
Q Consensus 862 ~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~-~ 939 (985)
..+.+.+..++..++++++.+.|++ ++.+ ..+.+.+ +.++++ +.+..++.+.|.++||.+.... +
T Consensus 272 --~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~--~~~~~~~---~~~~~~------~~~~~~~~~~l~~~gi~v~~g~~~ 338 (365)
T 3get_A 272 --DDEFTEKTLENNFSQMELYKEFAKKHNIKI--IDSYTNF---ITYFFD------EKNSTDLSEKLLKKGIIIRNLKSY 338 (365)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHTTCEE--CCCSSSE---EEEECS------SSCHHHHHHHHHTTTEECEECGGG
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHhCCCEE--CCCCCeE---EEEECC------CCCHHHHHHHHHHCCEEEEECccC
Confidence 2245667777788888999999987 3433 2222222 445654 1278899999999999875322 2
Q ss_pred CCCCEEEEeccCCCCHHhhchHHHHHHHHHHHH
Q 001990 940 PVPGTLMIEPTESESKVCHNREDLFFQILLSLT 972 (985)
Q Consensus 940 pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~ 972 (985)
. ++.+|++++ |++|++ +++++|++++
T Consensus 339 ~-~~~iRis~~---~~~~i~---~l~~~l~~~l 364 (365)
T 3get_A 339 G-LNAIRITIG---TSYENE---KFFTEFDKIL 364 (365)
T ss_dssp T-CSEEEEECC---CHHHHH---HHHHHHHHHH
T ss_pred C-CCEEEEEcC---CHHHHH---HHHHHHHHHh
Confidence 2 589999985 899999 9999998864
No 89
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.83 E-value=1.2e-18 Score=205.15 Aligned_cols=356 Identities=11% Similarity=0.022 Sum_probs=227.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCc---cceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHH
Q 001990 139 MKFSKFDEGLTESQMIEHMQKLASMNKV---YKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLN 215 (985)
Q Consensus 139 ~~lp~~~~~~se~e~~~~~~~~~~~n~~---~~~~lG~g~~~~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e 215 (985)
..+| ..+.+-.++++++.+....+.. ...|.|.-+.+...|+.+.+.+.+ .+-+.-..| +.+.+..+...+
T Consensus 44 ~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~--~~n~~~~~~--~~~p~~~~lE~~ 117 (475)
T 3k40_A 44 DAAP--EKPEKWQDVMQDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSG--AIACIGFTW--IASPACTELEVV 117 (475)
T ss_dssp SSCC--SSCCCHHHHHHHHHHHTGGGCCCTTCTTBCCSSCCCCCHHHHHHHHHHH--HHCCCSSSC--CCCHHHHHHHHH
T ss_pred CCCC--CCCCCHHHHHHHHHHHHhccCCCCCCcCceeeCCCCCcHHHHHHHHHHH--HhCccccCc--cCCcHHHHHHHH
Confidence 4577 5788999999999987544321 234555544343455565433222 110111112 235566677777
Q ss_pred HHHHHHHhhCCCCc---------ceeeccchHHHHHHHHHHhhhhc-------C---------CCCEEEEcCCCChhHHH
Q 001990 216 FQTMIADLTGLPMS---------NASLLDEGTAAAEAMAMCNNIQK-------G---------KKKTFIIASNCHPQTID 270 (985)
Q Consensus 216 ~q~~ia~L~g~~~~---------~~sl~~~~ta~~ea~~~a~~~~~-------~---------~g~~Vlv~~~~h~s~~~ 270 (985)
...++++++|.+.. ...+++|||.+...++++.+... + ++++|++++..|+++.+
T Consensus 118 v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~ 197 (475)
T 3k40_A 118 MMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVER 197 (475)
T ss_dssp HHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHH
T ss_pred HHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHHHH
Confidence 78899999999864 46778888877665555443110 0 24689999999999999
Q ss_pred HHHHhhcCCCeEEEEeCc-------hhhhc-cCCC------EeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecc
Q 001990 271 ICITRADGFDIKVVVSDL-------KDIDY-KSGD------VCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDL 335 (985)
Q Consensus 271 ~~~~~a~~~gi~v~~~~~-------~~l~~-l~~~------t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~ 335 (985)
.++. .|++++.++. ++|++ +.++ +.+|+++.+ |.+|.++|+++|+++||++|++++||+ .
T Consensus 198 ~~~~----~g~~~~~v~~d~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~-A 272 (475)
T 3k40_A 198 AGLL----GGVKLRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDA-A 272 (475)
T ss_dssp HHHH----HTCEEEEECCBTTBCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEEC-T
T ss_pred HHHH----cCCceEEEECCCCCcCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeH-H
Confidence 8763 3778877764 45655 4332 677888887 579999999999999999999999954 3
Q ss_pred ccccCCCCC-------CcccceEEEecC-ccccccCCCCCCceEEEEEchh-hH-hcC---CCceeeeeecCCC-Ccce-
Q 001990 336 LALTILKPP-------GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQE-YK-RMM---PGRIVGVSIDSSG-KPAL- 400 (985)
Q Consensus 336 ~alg~l~~p-------~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~-~~-~~l---p~~~vG~s~d~~g-~~~~- 400 (985)
++.+.+..+ +-.++|.+++++ |+++.|. ++|+++++++ .+ +.+ ++.+.+ +..+ ...+
T Consensus 273 ~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~-----g~g~l~~~~~~~l~~~~~~~~~yl~~---~~~~~~~~~~ 344 (475)
T 3k40_A 273 YAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNF-----DCSAMWLKDPSWVVNAFNVDPLYLKH---DMQGSAPDYR 344 (475)
T ss_dssp TGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS-----SCEEEEESSGGGC--------------------------
T ss_pred hHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCC-----ceEEEEEeCHHHHHHHhcCCccccCC---CcCCCCCCcc
Confidence 333322111 112479999999 7787774 3567888764 32 222 111111 0000 0000
Q ss_pred EEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEE
Q 001990 401 RVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKV 480 (985)
Q Consensus 401 ~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i 480 (985)
.+.+ +.-|| ....++.+++ ..+|.+|++++.++..++++++++.|++++|++++.++....+.|
T Consensus 345 ~~~~----~~sr~----------~~~l~l~~al--~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~~~~~iv~f 408 (475)
T 3k40_A 345 HWQI----PLGRR----------FRALKLWFVL--RLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCF 408 (475)
T ss_dssp --------CCCGG----------GTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSCCBTTEEEE
T ss_pred cccc----cCCCc----------ccHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEE
Confidence 0000 01111 1122333333 667889999999999999999999999984499987666667777
Q ss_pred ecCC----HHHHHHHHHHcCce-eeee--c-CCeEEEEecc-CCCHHHHHHHHHHHhC
Q 001990 481 KCAD----AHAIASAAYKIEMN-LRVV--D-SNTVTASFDE-TTTLEDVDKLFIVFAG 529 (985)
Q Consensus 481 ~~~~----~~~l~~~L~~~Gi~-~~~~--~-~~~lris~~~-~~t~edid~ll~~l~~ 529 (985)
+.++ ..++.++|.++|+. +... . ...+|++++. .+|++||++++++|..
T Consensus 409 ~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~ 466 (475)
T 3k40_A 409 RLKGSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSA 466 (475)
T ss_dssp EESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EeCCchHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 7643 67899999988774 3321 2 3679999875 4589999999999974
No 90
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.83 E-value=1.1e-19 Score=207.93 Aligned_cols=300 Identities=14% Similarity=0.079 Sum_probs=200.5
Q ss_pred HHHHHHHHHHHHHHhC--CCccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEE
Q 001990 631 QEMFNNLGEWLCTITG--FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSV 707 (985)
Q Consensus 631 ~~~~~el~~~la~l~G--~~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v 707 (985)
.++.+++++++++.+| .+... ++.++|++++..++.++. .++++|+++...|..+...++..|.+++.+
T Consensus 65 ~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~ 136 (391)
T 3dzz_A 65 AEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFT--------SPGDQILVQEPVYNMFYSVIEGNGRRVISS 136 (391)
T ss_dssp HHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHS--------CTTCEEEECSSCCHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhC--------CCCCeEEECCCCcHHHHHHHHHcCCEEEEe
Confidence 3567788889999988 44444 455666666544443321 467899999987777666778899999999
Q ss_pred eCCC-C--CCCCHHHHHHHHHhcCCCeEEEEEEcC-CCcccc---ccCHHHHHHHHHHcCCEEEEEccccccc-cC--CC
Q 001990 708 GTDA-K--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVY---EEGIDEICKIIHDNGGQVYMDGANMNAQ-VG--LT 777 (985)
Q Consensus 708 ~~~~-~--g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i---~~di~eI~~la~~~g~lliVD~a~~~~~-~g--~~ 777 (985)
|++. + +.+|+++|++++++ +++++|++++| |++|.+ + ++++|+++|+++|+++|+|++|.... .+ ..
T Consensus 137 ~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~i~~p~nptG~~~~~~-~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~ 213 (391)
T 3dzz_A 137 DLIYENSKYSVNWADLEEKLAT--PSVRMMVFCNPHNPIGYAWSEE-EVKRIAELCAKHQVLLISDEIHGDLVLTDEDIT 213 (391)
T ss_dssp CCEEETTEEECCHHHHHHHHTS--TTEEEEEEESSBTTTTBCCCHH-HHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCC
T ss_pred eeeecCCceeecHHHHHHHHhc--cCceEEEEECCCCCCCcccCHH-HHHHHHHHHHHCCCEEEEecccccccCCCCCce
Confidence 9852 3 34999999999963 58999999999 679998 5 79999999999999999999985221 11 11
Q ss_pred CCCcCC---Cc--EEEeCCcccccccCCCCCCcceeeeec-ccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhh
Q 001990 778 SPGYIG---AD--VCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 778 ~~g~~g---~D--i~~~s~hKtl~~p~g~GGPg~G~l~~~-~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~ 851 (985)
....++ .| +++.|+||+|+. +|.++|+++++ +++.+.+...... ..+.+. +..
T Consensus 214 ~~~~~~~~~~d~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~~~~-----------~~~~~~------~~~ 272 (391)
T 3dzz_A 214 PAFTVDWDAKNWVVSLISPSKTFNL----AALHAACAIIPNPDLRARAEESFFL-----------AGIGEP------NLL 272 (391)
T ss_dssp CGGGSCTTTGGGEEEEECSHHHHTC----TTTCCEEEECCSHHHHHHHHHHHHH-----------HTCSSC------CTT
T ss_pred ehhhcCccccCcEEEEEeChhhccc----cchhheEEEECCHHHHHHHHHHHHh-----------hccCCC------CHH
Confidence 111222 56 889999999953 46789999987 6665544211000 000011 111
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHH-H
Q 001990 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-D 929 (985)
Q Consensus 852 ~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~-e 929 (985)
...++.+.+.. +.+.+.+..++..++++++.+.|++ ...+....+.+... +.++++. .+.+..++.+.|. +
T Consensus 273 ~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~l~~~ 345 (391)
T 3dzz_A 273 AIPAAIAAYEE-GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYL--AWVDISA----LGMNAEDFCKYLREK 345 (391)
T ss_dssp HHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCBSSE--EEEECGG----GCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCceEE--EEEehhh----cCCCHHHHHHHHHHh
Confidence 22223334433 3445666777778888999999987 32333323222221 3355541 2467889999995 8
Q ss_pred CCCccCCCC-C--CCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 930 YGFHGPTMS-W--PVPGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 930 ~Gi~~~~~~-~--pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
+||.+.... + +.++.+|++++ ++++|++ ++++.|++++++
T Consensus 346 ~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~---~~l~~l~~~l~~ 388 (391)
T 3dzz_A 346 TGLIISAGNGYRGNGHEFVRINLA--CPKELVI---DGMQRLKQGVLN 388 (391)
T ss_dssp HCEECEESGGGCTTGGGEEEEECC--SCHHHHH---HHHHHHHHHHHT
T ss_pred CCEEEeCchhhCCCCCCEEEEEec--CCHHHHH---HHHHHHHHHHHH
Confidence 899875321 2 12478999988 6899999 999999988764
No 91
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.83 E-value=1.2e-19 Score=203.84 Aligned_cols=303 Identities=16% Similarity=0.161 Sum_probs=195.2
Q ss_pred HHHHHHHHhCCCcc----ceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHH--------HHHhcCc--
Q 001990 637 LGEWLCTITGFDSF----SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA--------TAAMCGM-- 702 (985)
Q Consensus 637 l~~~la~l~G~~~~----~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~--------~~~~~G~-- 702 (985)
+++..+++||++.+ ++++.||+++++++++++. +|+|+|+..+..||-|-. .....|.
T Consensus 105 a~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All--------~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~ 176 (490)
T 3ou5_A 105 CQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL--------QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFF 176 (490)
T ss_dssp HHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC--------C-CCCEECBC-------------------------
T ss_pred HHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHc--------CCCCEEEecccCCCCcccccccCCCcccccccccc
Confidence 45678899999975 7999999999988887764 588999988877775521 1122333
Q ss_pred EEEEEeCC-CCCCCCHHHHHHHHHhcCCCeEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccc---cCCCC
Q 001990 703 KIVSVGTD-AKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ---VGLTS 778 (985)
Q Consensus 703 ~v~~v~~~-~~g~iDle~L~~~i~~~~~~t~~Vvi~~pn~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~---~g~~~ 778 (985)
+++.+++| +++.+|.|.+++...+++|+ +|++....+.-.+ |+++++++|++.|++|++|.||..|+ +.+.+
T Consensus 177 ~~~~Y~vd~~t~~IDyd~~~~~A~~~kPk--lIi~G~SaY~r~i--d~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~ps 252 (490)
T 3ou5_A 177 ESMPYKLNPKTGLIDYNQLALTARLFRPR--LIIAGTSAYARLI--DYARMREVCDEVKAHLLADMAHISGLVAAKVIPS 252 (490)
T ss_dssp ---CBCEETTTTEECHHHHHHHHHHHCCS--EEEECCSSCCSCC--CHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCC
T ss_pred cccccccCCCCCcccHHHHHHHHhhcCCC--eEEECCccCcccc--CHHHHHHHHhhcccEEEechhhhhhhhcccccCC
Confidence 44444555 35899999999999876554 5665444444444 79999999999999999999997655 23456
Q ss_pred CCcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCC--CccccCCCCCCCCCC-CCCCCcccccchhhhHHHH
Q 001990 779 PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS--HPVVSTGGIPAPEKS-QPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 779 ~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg--~~~g~~~~~~~~~~~-~~t~~i~s~~~g~~~~~~~ 855 (985)
|-.. +|+++.+.|||| .||++|+|.+++.....-+. .-... +..+ ... .-.+.+.+.+. ...+++.
T Consensus 253 P~~~-ADvVTtTTHKTL------rGPrGG~Il~~~~~~~~~~k~~~~~~~--~~~k-kin~aVFPg~qggp~-~h~IAAk 321 (490)
T 3ou5_A 253 PFKH-ADIVTTTTHKTL------RGARSGLIFYRKGVKAVDPKTGREIPY--TFED-RINFAVFPSLQGGPH-NHAIAAV 321 (490)
T ss_dssp GGGT-CSEEEEESSSTT------CSCSCEEEEEECSEEEECC--CCEEEC--CCHH-HHHHHHTTTTCSSCC-HHHHHHH
T ss_pred cccc-ceEEeccccccc------cCCCceEEEeccccccccccccchhHH--HHHH-HHHhhcCccccccch-HHHHHHH
Confidence 6554 899999999998 68999999998753211110 00000 0000 000 00111122121 1223444
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCcc
Q 001990 856 SYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHG 934 (985)
Q Consensus 856 A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~ 934 (985)
|.++...+.+ .+++..+++.+|++.|.+.|.+ |+.++..| +..|.+.+|+++ .++++.+..+.|.+.||.+
T Consensus 322 AVaf~Ea~~p-~fk~Ya~qVv~NAkaLA~~L~~~G~~vvsGg---TdnHlvLvDl~~----~g~tG~~ae~~Le~agItv 393 (490)
T 3ou5_A 322 AVALKQACTP-MFREYSLQVLKNARAMADALLERGYSLVSGG---TDNHLVLVDLRP----KGLDGARAERVLELVSITA 393 (490)
T ss_dssp HHHHHHHHSH-HHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CSSSEEEEECGG----GTCCHHHHHHHHHHTTEEC
T ss_pred HHHHHHHHhH-hHHHHHHHHHHHHHHHHHHHHhCCCeeecCC---CCceEEEEeccc----cCCCHHHHHHHHHHcCcEE
Confidence 5555555544 4688999999999999999987 88886533 445678899863 3788999999999999987
Q ss_pred CC--CC---CC-CCCEEEEeccC----CCCHHhhchHHHHHHHHHHHHH
Q 001990 935 PT--MS---WP-VPGTLMIEPTE----SESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 935 ~~--~~---~p-v~~~lris~t~----~~t~eeId~~~~~i~aL~~i~~ 973 (985)
+. +. .| ++..|||.... .-.++|++ ++.+.|.+++.
T Consensus 394 NkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~---~IA~~I~~~l~ 439 (490)
T 3ou5_A 394 NKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFR---RVVDFIDEGVN 439 (490)
T ss_dssp EEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHH---HHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHH---HHHHHHHHHHH
Confidence 52 21 12 45789998654 35678888 77777666543
No 92
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.83 E-value=8.7e-19 Score=203.62 Aligned_cols=318 Identities=14% Similarity=0.116 Sum_probs=200.0
Q ss_pred hcHHHHHHHHHHHHHHHhCCCccc-eecChHHHHHHHHHHHHH-HHHH---hcCC---------CCCCEEEEcCCCCCCc
Q 001990 628 QGYQEMFNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIR-AYHK---ARGD---------HHRNVCIIPVSAHGTN 693 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~~~~~-~~~~sGa~g~~a~l~air-~~~~---~~g~---------~~~~~Vlv~~~~Hg~~ 693 (985)
.+..+.+.++++++++++|.+... ++.++|++++..++.++. .|.. .+|. ...++|+++...|.++
T Consensus 57 ~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~ 136 (432)
T 3a9z_A 57 RKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSI 136 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhH
Confidence 456677889999999999997543 556666777765555542 2211 1220 0113566666666554
Q ss_pred HHH----HHhcCcEEEEEeCCC-CCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcC-------
Q 001990 694 PAT----AAMCGMKIVSVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNG------- 760 (985)
Q Consensus 694 ~~~----~~~~G~~v~~v~~~~-~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g------- 760 (985)
... ++..|++++.+|.++ ++.+|+++|+++++ +++++|++++| |++|.+. |+++|.++|+++|
T Consensus 137 ~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~~~~~~~ 212 (432)
T 3a9z_A 137 RLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVR---PTTCLVTIMLANNETGVIM-PISEISRRIKALNQIRAASG 212 (432)
T ss_dssp HHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCC---TTEEEEECCSBCTTTCBBC-CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhcc---CCceEEEEECcccCccccc-CHHHHHHHHHhcCccccccc
Confidence 332 234799999999976 78899999999987 78999999998 4799998 8999999999999
Q ss_pred ---CEEEEEccccccccCCCCCCcCCCcEEEeCCcccccccCCCCCCcceeeeecccc-cCcCCCCccccCCCCCCCCCC
Q 001990 761 ---GQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHL-APFLPSHPVVSTGGIPAPEKS 836 (985)
Q Consensus 761 ---~lliVD~a~~~~~~g~~~~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l-~~~lpg~~~g~~~~~~~~~~~ 836 (985)
+++|+|++|..+...+ ....+++|++++|+||+| ||++|+++++++. ...+.....++... ....
T Consensus 213 ~~~~~livDea~~~~~~~~-~~~~~~~d~~~~s~~K~~-------g~~~G~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 281 (432)
T 3a9z_A 213 LPRVLVHTDAAQALGKRRV-DVEDLGVDFLTIVGHKFY-------GPRIGALYVRGVGKLTPLYPMLFGGGQE---RNFR 281 (432)
T ss_dssp CCCCEEEEECTTTTTTSCC-CHHHHCCSEEEEEGGGTT-------CCSCEEEEETTBTTTBCCCCSCCSSCGG---GGTS
T ss_pred CCceEEEEEchhhhCCccc-ChhhcCCCEEEEehhHhc-------CCcceEEEEccccccCCcCceeecCCcc---cccc
Confidence 9999999986432211 112357899999999986 3669999999765 33333222221100 0011
Q ss_pred CCCCCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc--cCCeeEcCC--C-CceeEEEEEEecC
Q 001990 837 QPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILFRGV--N-GTVAHEFIVDLRG 911 (985)
Q Consensus 837 ~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~--~~~i~~~g~--~-~~~~~~~vv~~~~ 911 (985)
.++.+. ..+.++.+.+..+ .+++.+..++..++++++.+.|++ ++.+.+.++ . ......+.+.+..
T Consensus 282 ~~~~~~--------~~~~a~~aal~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (432)
T 3a9z_A 282 PGTENT--------PMIAGLGKAADLV-SENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQG 352 (432)
T ss_dssp CSCCCH--------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECS
T ss_pred CCCcCH--------HHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCC
Confidence 122221 1112222334433 246777778888899999999986 444443332 0 0111123344431
Q ss_pred ccccCCCCHHHHHHHHH----HCCCccCCCC----------CCC-----CCEEEEeccCCCCHHhhchHHHHHHHHHHHH
Q 001990 912 LKNTAGIEPEDVAKRLM----DYGFHGPTMS----------WPV-----PGTLMIEPTESESKVCHNREDLFFQILLSLT 972 (985)
Q Consensus 912 ~~~~~g~~~~~l~~~L~----e~Gi~~~~~~----------~pv-----~~~lris~t~~~t~eeId~~~~~i~aL~~i~ 972 (985)
.+.+..++.+.|. +.|+.+.... +.+ .+.+|++++..+|++|++ +++++|++++
T Consensus 353 ----~~~~~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~---~~~~~l~~~~ 425 (432)
T 3a9z_A 353 ----SQLRGYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVD---LIVQDLKQAV 425 (432)
T ss_dssp ----TTCCHHHHHHHCSSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHH---HHHHHHHHHH
T ss_pred ----CCCcHHHHHHHhcCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHH---HHHHHHHHHH
Confidence 1235566665542 2233221100 011 378999999999999999 9999999998
Q ss_pred HHHH
Q 001990 973 KFTT 976 (985)
Q Consensus 973 ~~~~ 976 (985)
++++
T Consensus 426 ~~~~ 429 (432)
T 3a9z_A 426 NQLE 429 (432)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
No 93
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.83 E-value=2.3e-19 Score=203.77 Aligned_cols=285 Identities=13% Similarity=0.100 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHhCC-Cccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCC
Q 001990 634 FNNLGEWLCTITGF-DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA 711 (985)
Q Consensus 634 ~~el~~~la~l~G~-~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~ 711 (985)
..++++++++++|. +... +++++|++++..+ ++.+ ..++++|+++...|..+...++..|++++.+|.++
T Consensus 69 ~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~---~~~~-----~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~ 140 (367)
T 3euc_A 69 SEALRAKLKEVMQVPAGMEVLLGNGSDEIISML---ALAA-----ARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRA 140 (367)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHH---HHHT-----CCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECCT
T ss_pred HHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHH---HHHH-----cCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCC
Confidence 45788999999998 4434 4445555554333 3332 13678999988888777777888999999999988
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEEEEcCC-Cccccc--cCHHHHHHHHHHc--CCEEEEEcccccccc-CC-CCCCcCCC
Q 001990 712 KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDN--GGQVYMDGANMNAQV-GL-TSPGYIGA 784 (985)
Q Consensus 712 ~g~iDle~L~~~i~~~~~~t~~Vvi~~pn-~~G~i~--~di~eI~~la~~~--g~lliVD~a~~~~~~-g~-~~~g~~g~ 784 (985)
++.+|+++|++++++ .++++|++++|+ ++|.+. .++++|+++|++| |+++++|++|..... +. ...+..+.
T Consensus 141 ~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 218 (367)
T 3euc_A 141 DFTLDRGAMLAAMAE--HQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGN 218 (367)
T ss_dssp TSCCCHHHHHHHHHH--HCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTT
T ss_pred CCCCCHHHHHHHhhc--cCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCC
Confidence 889999999999983 178899999984 699884 2588999999999 999999999852111 10 11123455
Q ss_pred cEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhc
Q 001990 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 785 Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg 864 (985)
++++.|+||+ +. +|.++|++++++++.+.+.... .+.+ . +.....++.+++..
T Consensus 219 ~i~~~s~sK~-~~----~G~r~G~~~~~~~~~~~~~~~~--------------~~~~--~----~~~~~~a~~~~l~~-- 271 (367)
T 3euc_A 219 LLVMRTVSKL-GL----AGIRLGYVAGDPQWLEQLDKVR--------------PPYN--V----NVLTEATALFALEH-- 271 (367)
T ss_dssp EEEEEECCCT-TS----CSCCEEEEEECHHHHHHHGGGC--------------CSSC--C----CHHHHHHHHHHHTT--
T ss_pred EEEEecchhh-cc----cccCceeeeeCHHHHHHHHHhC--------------CCCC--C----CHHHHHHHHHHhcC--
Confidence 6888899998 43 4678999999877665442110 0001 1 11222223333433
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC--C-C
Q 001990 865 SKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW--P-V 941 (985)
Q Consensus 865 ~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~--p-v 941 (985)
.+.+.+..++..++++++.+.|++...+....+.+. .+.++++ +..++.+.|.++||.+..... + .
T Consensus 272 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~~~---~~~~~~~--------~~~~l~~~l~~~gi~v~~~~~~~~~~ 340 (367)
T 3euc_A 272 VAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPSAAN---FLLARVP--------DAAQTFDRLLARKVLIKNVSKMHPLL 340 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCCSSS---EEEEECS--------CHHHHHHHHHTTTEECEECGGGCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCCCe---EEEEECC--------CHHHHHHHHHHCCeEEEECCccCCCC
Confidence 344666777788888999999987323322222222 1334442 578899999999998753221 1 3
Q ss_pred CCEEEEeccCCCCHHhhchHHHHHHHHHHHH
Q 001990 942 PGTLMIEPTESESKVCHNREDLFFQILLSLT 972 (985)
Q Consensus 942 ~~~lris~t~~~t~eeId~~~~~i~aL~~i~ 972 (985)
++.+|++++ |++|+| +++++|++++
T Consensus 341 ~~~iRis~~---~~~~i~---~~~~~l~~~l 365 (367)
T 3euc_A 341 ANCLRVTVS---TPEENA---QFLEAFAASL 365 (367)
T ss_dssp TTEEEEECC---CHHHHH---HHHHHHHHHT
T ss_pred CCEEEEecC---CHHHHH---HHHHHHHHHh
Confidence 589999975 999999 9999998865
No 94
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.83 E-value=3.6e-19 Score=203.75 Aligned_cols=297 Identities=13% Similarity=0.046 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001990 209 RLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 209 ~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~ 288 (985)
..+.+.++++.+|+++|.++.++.+++|+|.+++.++.++ +. +||+|++++..|+++. +...++..|++++.++.
T Consensus 40 ~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~-~~--~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~ 114 (392)
T 2z9v_A 40 FQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASL-IS--PDDVVLNLASGVYGKG--FGYWAKRYSPHLLEIEV 114 (392)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHH-CC--TTCCEEEEESSHHHHH--HHHHHHHHCSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHh-cC--CCCEEEEecCCcccHH--HHHHHHHcCCceEEeeC
Confidence 3456778899999999998778888899998888877665 23 7899999999998873 22223334666666543
Q ss_pred --------hhhhc-c--CCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCC-CCCcccceEEEec
Q 001990 289 --------KDIDY-K--SGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGS 355 (985)
Q Consensus 289 --------~~l~~-l--~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~-~p~~~GaDi~v~s 355 (985)
+++++ + ++++++|++++| |.+|.+.|+++|.++|+++|+++++| +..+.|... +..++|+|++++|
T Consensus 115 ~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-~a~~~g~~~~~~~~~~~d~~~~s 193 (392)
T 2z9v_A 115 PYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVD-AVSSFGGMKTHPEDCKADIYVTG 193 (392)
T ss_dssp CTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEE-CTTTBTTBSCCGGGGTCSEEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEE-cccccCCcccccccccceEEEec
Confidence 45655 5 568999999987 68999999999999999999999995 344555432 2345789999999
Q ss_pred C-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecc--ccc-ccccccccCCCccchhHHHHHHH
Q 001990 356 A-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQ--TRE-QHIRRDKATSNICTAQALLANMA 431 (985)
Q Consensus 356 ~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~--tre-~~~rre~atsni~t~~~l~a~~a 431 (985)
. |+++ |+||+|++++++++++++.....| .|. +.+.+. ... +..++..+|.|+ ....++.+
T Consensus 194 ~sK~~~-----~~~g~G~l~~~~~~~~~l~~~~~g-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~ 258 (392)
T 2z9v_A 194 PNKCLG-----APPGLTMMGVSERAWAKMKANPLA-----PRA--SMLSIVDWENAWSRDKPFPFTPSV---SEINGLDV 258 (392)
T ss_dssp SSSTTC-----CCSCCEEEEECHHHHHHHHTCTTS-----CCS--STTCSGGGTTTTSTTSCCSSCCCH---HHHHHHHH
T ss_pred Cccccc-----CCCceeEEEECHHHHHHhhhccCC-----CCc--eeccHHHHHhhhcccCCCCCCCCH---HHHHHHHH
Confidence 8 6675 345679999999887665211110 000 001100 000 111223344444 23334444
Q ss_pred HHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcC-CC---CcceEEEecC-C--HHHHHHHHHHc-Cceeeee-
Q 001990 432 AMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG-LP---FFDTVKVKCA-D--AHAIASAAYKI-EMNLRVV- 502 (985)
Q Consensus 432 a~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~~---~~~~~~i~~~-~--~~~l~~~L~~~-Gi~~~~~- 502 (985)
++ ..+...|++++.++..++++++++.|+++| +++.. .. ....+.+..+ + ..++.++|.++ ||.+...
T Consensus 259 al--~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~ 335 (392)
T 2z9v_A 259 AL--DLYLNEGPEAVWARHALTAKAMRAGVTAMG-LSVWAASDSIASPTTTAVRTPDGVDEKALRQAARARYGVVFSSGR 335 (392)
T ss_dssp HH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBSSSSGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECEECC
T ss_pred HH--HHHHhccHHHHHHHHHHHHHHHHHHHHHcC-CeeccCCccccCCceEEEECCCCCCHHHHHHHHHhcCCEEEecCC
Confidence 44 444455788999999999999999999885 87764 21 2234566665 2 78899999987 9988643
Q ss_pred ---cCCeEEEEecc-CCCHHHHHHHHHHHhC
Q 001990 503 ---DSNTVTASFDE-TTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ---~~~~lris~~~-~~t~edid~ll~~l~~ 529 (985)
.++.+|+++.. ++|++|+++++++|..
T Consensus 336 ~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~ 366 (392)
T 2z9v_A 336 GETLGKLTRIGHMGPTAQPIYAIAALTALGG 366 (392)
T ss_dssp GGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEeCcccccCHHHHHHHHHHHHH
Confidence 25889999755 8999999999999973
No 95
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.83 E-value=2.9e-19 Score=218.88 Aligned_cols=314 Identities=14% Similarity=0.075 Sum_probs=201.3
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHH-HHhcCcEEEEEeCCC
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT-AAMCGMKIVSVGTDA 711 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~-~~~~G~~v~~v~~~~ 711 (985)
.+.++++.+|+++|.+.+.++++++++++.++++++. .++|+||++...|.++... +.+.|+++++++.+.
T Consensus 174 ~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~--------~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~ 245 (730)
T 1c4k_A 174 PAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALV--------SNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNR 245 (730)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhc--------CCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCc
Confidence 4779999999999999875555655566655555432 4788999999999877766 778999999987643
Q ss_pred C-----CCCCHHHH-----HHHHHhcCCC---e----EEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccc-
Q 001990 712 K-----GNINIEEL-----RKAAEANRDN---L----STLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ- 773 (985)
Q Consensus 712 ~-----g~iDle~L-----~~~i~~~~~~---t----~~Vvi~~pn~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~- 773 (985)
+ |.+|+++| +++|+++.++ + ++|++++||++|.+. |+++|+++||++|+++++|+||....
T Consensus 246 ~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn~~G~v~-dl~~I~~la~~~g~~livDeAh~~~~~ 324 (730)
T 1c4k_A 246 NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIY-NAHEVVKRIGHLCDYIEFDSAWVGYEQ 324 (730)
T ss_dssp CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEE-CHHHHHHHHGGGBSEEEEECTTCCGGG
T ss_pred cccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCCCCCeec-CHHHHHHHHHHcCCeEEEEcccccccc
Confidence 2 34788888 8888732111 4 889999999999998 89999999999999999999985321
Q ss_pred -cCC---CCCC---cCCCc----EEEeCCcccccccCCCCCC-cceeeeecccccCcCCCCccccC-CCCCCCCCCCCCC
Q 001990 774 -VGL---TSPG---YIGAD----VCHLNLHKTFCIPHGGGGP-GMGPIGVKKHLAPFLPSHPVVST-GGIPAPEKSQPLG 840 (985)
Q Consensus 774 -~g~---~~~g---~~g~D----i~~~s~hKtl~~p~g~GGP-g~G~l~~~~~l~~~lpg~~~g~~-~~~~~~~~~~~t~ 840 (985)
++. ..+- .+|+| +++.|+||+| +|| ++|+++++++.... ....+... ..........+++
T Consensus 325 f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L------~g~~~gg~I~v~~~~l~g-~~~~i~~~~~~~~~~~~~stsp 397 (730)
T 1c4k_A 325 FIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ------AGFSQTSQIHKKDSHIKG-QLRYCDHKHFNNSFNLFMSTSP 397 (730)
T ss_dssp SSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHS------SCCTTCEEEEEECGGGTT-STTCCCHHHHHHHHHHHSCSSC
T ss_pred cCcccCCcCcccccccCCCCCCEEEEECCCCCC------CCCCCEEEEEecchhhcC-cccccCHHHHHHHHHHhCCCCC
Confidence 110 0111 34788 9999999997 355 46788777654311 00111000 0000000001111
Q ss_pred CcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCC---------------------
Q 001990 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVN--------------------- 898 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~--------------------- 898 (985)
+ ...+++..+++..+..++..+..++..+++++++++|++ ...+...++.
T Consensus 398 ~--------~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~ 469 (730)
T 1c4k_A 398 F--------YPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDY 469 (730)
T ss_dssp C--------HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGG
T ss_pred c--------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchh
Confidence 1 111111122333343322244567788889999999976 2222111110
Q ss_pred -----------------Ccee-E--EEEEEecCcc------ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCC
Q 001990 899 -----------------GTVA-H--EFIVDLRGLK------NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTES 952 (985)
Q Consensus 899 -----------------~~~~-~--~~vv~~~~~~------~~~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~ 952 (985)
+..+ . .+++..+++. ...|.++.++.+.|.++||.+.... .+.+|++++..
T Consensus 470 ~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~~---~~~ir~~~s~g 546 (730)
T 1c4k_A 470 WRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSD---LNSILFLMTPA 546 (730)
T ss_dssp GBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEEC---SSEEEEECCTT
T ss_pred hccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEECC---CCeEEEEeCCC
Confidence 0000 0 0344442110 1236789999999999999886432 37899999999
Q ss_pred CCHHhhchHHHHHHHHHHHHHHHH
Q 001990 953 ESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 953 ~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
+|++|++ +++++|+++.++..
T Consensus 547 ~t~e~i~---~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 547 ETPAKMN---NLITQLLQLQRLIE 567 (730)
T ss_dssp CCHHHHH---HHHHHHHHHHHHHH
T ss_pred CCHHHHH---HHHHHHHHHHHhcc
Confidence 9999999 99999999887654
No 96
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.83 E-value=8.2e-20 Score=207.67 Aligned_cols=309 Identities=11% Similarity=-0.010 Sum_probs=196.5
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCCC
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~~ 712 (985)
...++++.+++++|.+. .+++++|++++..++.+++. . ..++++|+++...|..+...+...|++++.++++++
T Consensus 33 ~~~~l~~~la~~~~~~~-v~~~~ggt~al~~~~~~~~~----~-~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 106 (375)
T 2fnu_A 33 RSLLFEEALCEFLGVKH-ALVFNSATSALLTLYRNFSE----F-SADRNEIITTPISFVATANMLLESGYTPVFAGIKND 106 (375)
T ss_dssp HHHHHHHHHHHHHTCSE-EEEESCHHHHHHHHHHHSSC----C-CTTSCEEEECSSSCTHHHHHHHHTTCEEEECCBCTT
T ss_pred HHHHHHHHHHHHhCCCe-EEEeCCHHHHHHHHHHHhcc----c-CCCCCEEEECCCccHhHHHHHHHCCCEEEEeccCCC
Confidence 35689999999999883 46677787766544443310 0 136789999999888877778889999999999888
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-CCCcCC-CcEEEeC
Q 001990 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-SPGYIG-ADVCHLN 790 (985)
Q Consensus 713 g~iDle~L~~~i~~~~~~t~~Vvi~~pn~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~-~~g~~g-~Di~~~s 790 (985)
+.+|+++|+++++ +++++|++++| +|.+. |+++|.++|+++|+++|+|++|..+..... ..+.++ +++.+++
T Consensus 107 ~~~d~~~l~~~i~---~~~~~v~~~~~--tG~~~-~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s 180 (375)
T 2fnu_A 107 GNIDELALEKLIN---ERTKAIVSVDY--AGKSV-EVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFH 180 (375)
T ss_dssp SSBCGGGSGGGCC---TTEEEEEEECG--GGCCC-CHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECC
T ss_pred CCCCHHHHHhhcC---cCceEEEEeCC--cCCcc-CHHHHHHHHHHcCCEEEEECccccCCeECCeeccccCCeEEEeCC
Confidence 8899999999887 68999888887 89988 899999999999999999999864332111 123333 3444556
Q ss_pred CcccccccCCCCCCcceeeee-c-ccccCcCCCC-ccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhchhh
Q 001990 791 LHKTFCIPHGGGGPGMGPIGV-K-KHLAPFLPSH-PVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 791 ~hKtl~~p~g~GGPg~G~l~~-~-~~l~~~lpg~-~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~g 867 (985)
.||+|+ ||+|++++ + +++.+.+... ..+.. +...+..+..+.+... ..... .++.+. ...++
T Consensus 181 ~~K~~~-------~g~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~--~~a~~~---~~~~~ 245 (375)
T 2fnu_A 181 AIKPIT-------TAEGGAVVTNDSELHEKMKLFRSHGML-KKDFFEGEVKSIGHNF--RLNEI--QSALGL---SQLKK 245 (375)
T ss_dssp TTSSSC-------CSSCEEEEESCHHHHHHHHHHTBTTEE-ESSSSCEEESSCCCBC--CCCHH--HHHHHH---HHHTT
T ss_pred CCCCcc-------ccCceEEEeCCHHHHHHHHHHHhcCCc-cccccccccccccccC--CCCHH--HHHHHH---HHHHH
Confidence 669883 24666766 3 4453322110 00100 0000000001111110 00111 112121 12355
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCeeEcCC--C-CceeEEEEEEecCccccCCC-CHHHHHHHHHHCCCccCCCCCC---
Q 001990 868 LTEASKIAILNANYMAKRLEKHYPILFRGV--N-GTVAHEFIVDLRGLKNTAGI-EPEDVAKRLMDYGFHGPTMSWP--- 940 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~~~~i~~~g~--~-~~~~~~~vv~~~~~~~~~g~-~~~~l~~~L~e~Gi~~~~~~~p--- 940 (985)
+.+..++..++++++.+.|++...+.+.++ . ......+.+.++. .+. +..++.+.|.++||.+.....|
T Consensus 246 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~L~~~gi~v~~~~~p~~~ 321 (375)
T 2fnu_A 246 APFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQ----KFFTCKKLILESLHKRGILAQVHYKPIYQ 321 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECG----GGGGGHHHHHHHHHHTTEECBCCCCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCc----cccchHHHHHHHHHHCCCCcccccccccc
Confidence 667777888889999999987323333221 0 0111223455531 123 6788999999999987621112
Q ss_pred ------------C-------CCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 941 ------------V-------PGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 941 ------------v-------~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
. .+.+|++++..+|++|++ +++++|+++++++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~---~~~~~l~~~~~~~ 372 (375)
T 2fnu_A 322 YQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQ---NIAHSVLKTFESF 372 (375)
T ss_dssp SHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHH---HHHHHHHHHHHHH
T ss_pred chhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHH---HHHHHHHHHHHHh
Confidence 1 157999999999999999 9999999987754
No 97
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.83 E-value=1.4e-19 Score=206.62 Aligned_cols=292 Identities=12% Similarity=0.033 Sum_probs=196.5
Q ss_pred HHHHHHHHHHHhCCCcc-ceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCC--
Q 001990 634 FNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD-- 710 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~-~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~-- 710 (985)
..++++.+++++|.+.. .++.++|++++..++.++. .++++|++++..|..+...++..|++++.+|.+
T Consensus 63 ~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 134 (381)
T 1v2d_A 63 LPALREALAEEFAVEPESVVVTSGATEALYVLLQSLV--------GPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLT 134 (381)
T ss_dssp CHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEE
T ss_pred CHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCC
Confidence 34788899999998754 3556667766644443321 367899999888888777788899999999986
Q ss_pred -CCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccccCCC--CCC--cC
Q 001990 711 -AKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQVGLT--SPG--YI 782 (985)
Q Consensus 711 -~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~--di~eI~~la~~~g~lliVD~a~~~~~~g~~--~~g--~~ 782 (985)
+++.+|+++|+++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++|+|+++.....+.. ... ..
T Consensus 135 ~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~ 211 (381)
T 1v2d_A 135 PEGFRLDLSALEKALT---PRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAP 211 (381)
T ss_dssp TTEEECCHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCT
T ss_pred CccCCcCHHHHHHhcC---cCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcC
Confidence 457899999999886 78999999998 46898852 499999999999999999999853221111 111 24
Q ss_pred CCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHH
Q 001990 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 783 g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~ 862 (985)
+.|+++.++||+|+. .|.++|++++++++.+.+..... ..+.+.. .....++.+++..
T Consensus 212 ~~~~~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~~------------~~~~~~~------~~~~~a~~~~l~~ 269 (381)
T 1v2d_A 212 ERTFTVGSAGKRLEA----TGYRVGWIVGPKEFMPRLAGMRQ------------WTSFSAP------TPLQAGVAEALKL 269 (381)
T ss_dssp TTEEEEEEHHHHTTC----GGGCCEEEECCTTTHHHHHHHHH------------HHTSSCC------HHHHHHHHHHHHH
T ss_pred CCEEEEeechhhcCC----cccceEEEEeCHHHHHHHHHHHh------------hcccCCC------cHHHHHHHHHHhC
Confidence 789999999999853 35668999998776654321000 0000111 1112223334443
Q ss_pred hc-hhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-C
Q 001990 863 MG-SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-W 939 (985)
Q Consensus 863 lg-~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~-~ 939 (985)
.. .+++.+..++..++++++.+.|++ ++.+. .+.+.. .+.++++ +.+ +.+.|.++||.+.... +
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~--~~~~~~~------~~~---~~~~l~~~gi~v~~g~~~ 336 (381)
T 1v2d_A 270 ARREGFYEALREGYRRRRDLLAGGLRAMGLRVY--VPEGTY--FLMAELP------GWD---AFRLVEEARVALIPASAF 336 (381)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEE--CCSBSS--EEEEECT------TCC---HHHHHHHTCEECEEGGGG
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHCCCEec--CCCcce--EEEEecC------hHh---HHHHHHhCCEEEecchHh
Confidence 21 455667777888889999999987 55543 222222 2345554 122 6777888999874321 1
Q ss_pred C----CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHH
Q 001990 940 P----VPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 940 p----v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
. .++.+|++++. +++|++ ++++.|++++++.+
T Consensus 337 ~~~~~~~~~iRi~~~~--~~~~i~---~~~~~l~~~l~~~r 372 (381)
T 1v2d_A 337 YLEDPPKDLFRFAFCK--TEEELH---LALERLGRVVNSPR 372 (381)
T ss_dssp CSSSCCTTEEEEECCS--CHHHHH---HHHHHHHHHC----
T ss_pred CCCCCCCCEEEEEeCC--CHHHHH---HHHHHHHHHHhhcc
Confidence 1 24789999976 899999 99999999887654
No 98
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.83 E-value=3.9e-19 Score=204.43 Aligned_cols=293 Identities=17% Similarity=0.179 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCCC
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~~ 712 (985)
...++++.+++++|.+. .+.+++|++++++++.++... .++++|+++...|+++...++..|++++.+|.+
T Consensus 92 ~~~~l~~~la~~~~~~~-~i~~~sG~~a~~~~~~~l~~~------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-- 162 (401)
T 2bwn_A 92 YHRRLEAEIAGLHQKEA-ALVFSSAYNANDATLSTLRVL------FPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-- 162 (401)
T ss_dssp HHHHHHHHHHHHTTCSE-EEEESCHHHHHHHHHHHHHHH------STTCEEEEETTCCHHHHHHHHHSCCCEEEECTT--
T ss_pred HHHHHHHHHHHHhCCCc-EEEECCcHHHHHHHHHHHhcC------CCCCEEEECchhhHHHHHHHHHcCCeEEEEcCC--
Confidence 46689999999999864 455577877664444433211 256899999988877777778899999999975
Q ss_pred CCCCHHHHHHHHHhcC-CCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCC---cC----C
Q 001990 713 GNINIEELRKAAEANR-DNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG---YI----G 783 (985)
Q Consensus 713 g~iDle~L~~~i~~~~-~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g---~~----g 783 (985)
|+++|++++++.+ +++++|++++| |++|.+. |+++|+++|+++|+++++|++|..+..+....+ .. .
T Consensus 163 ---d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~ 238 (401)
T 2bwn_A 163 ---DVAHLRELIAADDPAAPKLIAFESVYSMDGDFG-PIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHR 238 (401)
T ss_dssp ---CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBC-CHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGG
T ss_pred ---CHHHHHHHHHhhccCCceEEEEecCcCCCCCcC-CHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCcccc
Confidence 8999999997654 47899999998 5799998 899999999999999999999964432110000 11 3
Q ss_pred CcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHh
Q 001990 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM 863 (985)
Q Consensus 784 ~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~l 863 (985)
.|+++.+++|+|+. || |++++++++.+.+....... ....++ ....++++.+.+..+
T Consensus 239 ~~i~~~s~sK~~~~------~G-G~~~~~~~~~~~l~~~~~~~-------~~~~~~---------~~~~~~a~~~al~~~ 295 (401)
T 2bwn_A 239 IDIFNGTLAKAYGV------FG-GYIAASARMVDAVRSYAPGF-------IFSTSL---------PPAIAAGAQASIAFL 295 (401)
T ss_dssp CSEEEEESSSTTCS------CC-EEEEECHHHHHHHHHHCHHH-------HTSBCC---------CHHHHHHHHHHHHHH
T ss_pred CcEEEeechhhccC------CC-CEEecCHHHHHHHHHhCcCc-------eecCCC---------CHHHHHHHHHHHHHH
Confidence 58899999999843 34 78888776654432100000 000011 112223344556666
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHH-HCCCccCCCCCC-
Q 001990 864 GSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYGFHGPTMSWP- 940 (985)
Q Consensus 864 g~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~-e~Gi~~~~~~~p- 940 (985)
...|+.+..++..++++++.+.|++ ++.+. ++.+. .+.+.++ .+.+..++.+.|. ++||.+....++
T Consensus 296 ~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~---~~~~~~~-----~~~~~~~~~~~L~~~~gi~v~~~~~~~ 365 (401)
T 2bwn_A 296 KTAEGQKLRDAQQMHAKVLKMRLKALGMPII--DHGSH---IVPVVIG-----DPVHTKAVSDMLLSDYGVYVQPINFPT 365 (401)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHTCCBC--CCSSS---CEEEECC-----CHHHHHHHHHHHHHHHCEECCEECTTT
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHCCCccc--CCCCC---eEEEEeC-----ChHHHHHHHHHHHhcCCEEEeecCCCC
Confidence 5556677778888899999999987 44442 22222 2445543 1234678999996 789998543322
Q ss_pred CC---CEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 941 VP---GTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 941 v~---~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
.+ +.+|++++..+|++|++ +++++|++++++
T Consensus 366 ~~~~~~~iRis~~~~~t~~~i~---~~~~~l~~~~~~ 399 (401)
T 2bwn_A 366 VPRGTERLRFTPSPVHDLKQID---GLVHAMDLLWAR 399 (401)
T ss_dssp SCTTCCEEEECCCTTSCHHHHH---HHHHHHHHHC--
T ss_pred CCCCCceEEEEeeCCCCHHHHH---HHHHHHHHHHHh
Confidence 22 58999999999999999 999999987654
No 99
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.83 E-value=1.3e-19 Score=207.06 Aligned_cols=289 Identities=12% Similarity=0.087 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCC
Q 001990 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA 711 (985)
Q Consensus 632 ~~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~ 711 (985)
+...++++.+++++|.+. .+++++|++++..++ +.+ ..++++|+++...|+.+...++..|.+++.+|.
T Consensus 84 ~~~~~l~~~la~~~g~~~-~i~~~sGt~a~~~~~---~~~-----~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-- 152 (384)
T 1bs0_A 84 VVHQALEEELAEWLGYSR-ALLFISGFAANQAVI---AAM-----MAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-- 152 (384)
T ss_dssp HHHHHHHHHHHHHHTCSE-EEEESCHHHHHHHHH---HHH-----CCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT--
T ss_pred HHHHHHHHHHHHHhCCCc-EEEeCCcHHHHHHHH---HHh-----CCCCcEEEEcccccHHHHHHHHHcCCCEEEeCC--
Confidence 356789999999999874 566777877664433 332 136788999999888777778889999999985
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccC---CCCCC--cCCCc
Q 001990 712 KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG---LTSPG--YIGAD 785 (985)
Q Consensus 712 ~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g---~~~~g--~~g~D 785 (985)
+|+++|++++++.++++++|++++| |++|.+. |+++|.++|+++|+++|+|++|..+..+ ...+. ..+.|
T Consensus 153 ---~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~d 228 (384)
T 1bs0_A 153 ---NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSA-PLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPE 228 (384)
T ss_dssp ---TCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBC-CHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCS
T ss_pred ---CCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCcc-CHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCc
Confidence 4899999999854335788888888 5799998 8999999999999999999998644321 10011 13589
Q ss_pred EEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhch
Q 001990 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~ 865 (985)
+++.|+||+|+ .+| |++++++++.+.+......+ . .+. .. +.....++.+.+..+..
T Consensus 229 i~~~s~sK~~~------~~G-G~~~~~~~~~~~l~~~~~~~---------~-~~~--~~----~~~~~~~~~~al~~~~~ 285 (384)
T 1bs0_A 229 LLVVTFGKGFG------VSG-AAVLCSSTVADYLLQFARHL---------I-YST--SM----PPAQAQALRASLAVIRS 285 (384)
T ss_dssp EEEEESSSTTS------SCC-EEEEECHHHHHHHHHHCHHH---------H-SSB--CC----CHHHHHHHHHHHHHHHS
T ss_pred EEEeeccchhh------ccC-cEEEeCHHHHHHHHHhchhh---------h-cCC--CC----CHHHHHHHHHHHHHHhc
Confidence 99999999984 234 89999877665432100000 0 000 11 12222333444554432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC----
Q 001990 866 KGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP---- 940 (985)
Q Consensus 866 ~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~p---- 940 (985)
..+.+..++..++++++.+.|++ ++++. ++.+.+ +.+.++ .+.+..++.+.|.++||.+....++
T Consensus 286 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~---~~~~~~-----~~~~~~~l~~~l~~~gi~v~~~~~~~~~~ 355 (384)
T 1bs0_A 286 DEGDARREKLAALITRFRAGVQDLPFTLA--DSCSAI---QPLIVG-----DNSRALQLAEKLRQQGCWVTAIRPPTVPA 355 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCEEC--SCCSSB---CCEEEE-----SHHHHHHHHHHHHHTTEECCEECTTSSCT
T ss_pred cccHHHHHHHHHHHHHHHHHHHhcCCccc--CCCCCE---EEEEeC-----CHHHHHHHHHHHHHCCcEEEeecCCCCCC
Confidence 13455667778889999999987 44332 222222 223433 1235678999999999987643322
Q ss_pred CCCEEEEeccCCCCHHhhchHHHHHHHHHHH
Q 001990 941 VPGTLMIEPTESESKVCHNREDLFFQILLSL 971 (985)
Q Consensus 941 v~~~lris~t~~~t~eeId~~~~~i~aL~~i 971 (985)
..+.+|++++..+|++|++ +++++|+++
T Consensus 356 ~~~~~Ri~~~~~~~~~~i~---~~~~~l~~~ 383 (384)
T 1bs0_A 356 GTARLRLTLTAAHEMQDID---RLLEVLHGN 383 (384)
T ss_dssp TCEEECCBCCTTCCHHHHH---HHHHHHHHH
T ss_pred CCceEEEEEcCCCCHHHHH---HHHHHHHhh
Confidence 1268999999989999999 999998864
No 100
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.83 E-value=2.1e-19 Score=205.64 Aligned_cols=300 Identities=16% Similarity=0.157 Sum_probs=196.9
Q ss_pred hcHHHHHHHHHHHHHHHhCC--Cc-c-ceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcE
Q 001990 628 QGYQEMFNNLGEWLCTITGF--DS-F-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~--~~-~-~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~ 703 (985)
+|..++.+.+.+++++.+|. +. . .+++++|++++..++.++ ..++++|++++..|..+...++..|++
T Consensus 63 ~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~--------~~~gd~vl~~~~~~~~~~~~~~~~g~~ 134 (389)
T 1gd9_A 63 IGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAF--------LKDGEEVLIPTPAFVSYAPAVILAGGK 134 (389)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTT--------CCTTCEEEEEESCCTTHHHHHHHHTCE
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHh--------CCCCCEEEEcCCCchhHHHHHHHCCCE
Confidence 45555566666666666684 33 3 455566666654433322 136789999988888877778889999
Q ss_pred EEEEeCCC--CCCCCHHHHHHHHHhcCCCeEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEccccccccC---
Q 001990 704 IVSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQVG--- 775 (985)
Q Consensus 704 v~~v~~~~--~g~iDle~L~~~i~~~~~~t~~Vvi~~pn-~~G~i~~--di~eI~~la~~~g~lliVD~a~~~~~~g--- 775 (985)
++.+|.++ ++.+|+++|+++++ +++++|++++|+ ++|.+.+ ++++|+++|+++|+++++|++|......
T Consensus 135 ~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~ 211 (389)
T 1gd9_A 135 PVEVPTYEEDEFRLNVDELKKYVT---DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDAR 211 (389)
T ss_dssp EEEEECCGGGTTCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCC
T ss_pred EEEeccCCccCCCCCHHHHHHhcC---cCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCC
Confidence 99999875 35789999999997 689999999985 6898852 5999999999999999999998633211
Q ss_pred CCCCC----cCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhh
Q 001990 776 LTSPG----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 776 ~~~~g----~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~ 851 (985)
..... ..+.|+++.|+||+|+. .|.++|++++++++.+.+..... ..+.+ .+ ..
T Consensus 212 ~~~~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~l~~~~~------------~~~~~--~~----~~ 269 (389)
T 1gd9_A 212 HYSIASLDGMFERTITVNGFSKTFAM----TGWRLGFVAAPSWIIERMVKFQM------------YNATC--PV----TF 269 (389)
T ss_dssp CCCGGGSTTCGGGEEEEEESTTTTTC----GGGCCEEEECCHHHHHHHHHHHT------------TTTCS--CC----HH
T ss_pred CCCHhhccCCCCCEEEEecChhhcCC----cccceEEEEECHHHHHHHHHHHh------------hhccC--CC----HH
Confidence 00111 13578999999999853 35568999998776654321100 00111 11 11
Q ss_pred HHHHHHHHHHHhchh--hHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHH
Q 001990 852 ILPISYTYIAMMGSK--GLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 852 ~~~~A~a~l~~lg~~--gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~ 928 (985)
...++.+++.. +.+ .+.+..++..++++++.+.|++ ++.+. .+.+..+ +.++++. .+.+..++.+.|.
T Consensus 270 ~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~--~~~~~~~----~~~~~~~~~~~l~ 340 (389)
T 1gd9_A 270 IQYAAAKALKD-ERSWKAVEEMRKEYDRRRKLVWKRLNEMGLPTV--KPKGAFY--IFPRIRD----TGLTSKKFSELML 340 (389)
T ss_dssp HHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC--CCCBTTE--ECCBCGG----GTCCHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcchHHHHHHHHHHHHHHHHHHHHHHcCCeec--CCCeeeE--EEEeccC----CCCCHHHHHHHHH
Confidence 11222233332 222 4566667778888999999987 44432 2222211 2234421 1457889999998
Q ss_pred -HCCCccCCCC-CC--CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 929 -DYGFHGPTMS-WP--VPGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 929 -e~Gi~~~~~~-~p--v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
++||.+.... +. .++.+|++++. ++++++ ++++.|++++++
T Consensus 341 ~~~gi~v~~g~~~~~~~~~~iRi~~~~--~~~~i~---~~l~~l~~~~~~ 385 (389)
T 1gd9_A 341 KEARVAVVPGSAFGKAGEGYVRISYAT--AYEKLE---EAMDRMERVLKE 385 (389)
T ss_dssp HHTCEECEEGGGGCGGGTTBEEEECCS--CHHHHH---HHHHHHHHHHHH
T ss_pred HhCCEEEeCchhhCCCCCCeEEEEecC--CHHHHH---HHHHHHHHHHHh
Confidence 8999874322 11 24789999874 899999 999999888764
No 101
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.82 E-value=8.1e-19 Score=201.37 Aligned_cols=292 Identities=12% Similarity=0.040 Sum_probs=194.2
Q ss_pred HhhHHHHHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhh-hhcCCCC-EEEEcCCCChhHHHHHHHhhcCCCeE
Q 001990 205 IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQKGKKK-TFIIASNCHPQTIDICITRADGFDIK 282 (985)
Q Consensus 205 ~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~~~~g~-~Vlv~~~~h~s~~~~~~~~a~~~gi~ 282 (985)
...+..+...++++.+++++|.++.++.+++|+|.+++.++.++. +..++|| +|++++..||++...++.+ +..|++
T Consensus 57 ~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~-~~~g~~ 135 (400)
T 3vax_A 57 YGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHL-AGRGFE 135 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHH-HTTTCE
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHH-HhcCCe
Confidence 344556778889999999999998889999999999888777653 1112789 9999999999999888765 457999
Q ss_pred EEEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCC-CCCcccceE
Q 001990 283 VVVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADI 351 (985)
Q Consensus 283 v~~~~~--------~~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~-~p~~~GaDi 351 (985)
++.++. +++++ +++++++|++.+| |++|.+.|+++|.++|+++|+++++| +..+.+... ....+ +|+
T Consensus 136 ~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D-~a~~~~~~~~~~~~~-~d~ 213 (400)
T 3vax_A 136 VDFLTPGPSGRISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVD-AAQGYGKVPGDLTTP-IDM 213 (400)
T ss_dssp EEEECCCTTCCCCHHHHHTTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEE-CTTTTTTSGGGGGSC-CSE
T ss_pred EEEEccCCCCCcCHHHHHHhcCCCceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEE-hhhhcCCCCcChhhc-CcE
Confidence 988864 45666 7889999999987 68999999999999999999999995 344554332 12344 999
Q ss_pred EEecCccccccCCCCCCceEEEE-Echh-hH---hcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHH
Q 001990 352 VVGSAQRFGVPMGYGGPHAAFLA-TSQE-YK---RMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQAL 426 (985)
Q Consensus 352 ~v~s~k~lg~P~~~GGP~~G~l~-~~~~-~~---~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l 426 (985)
+++|..++. |++|+|+++ ++++ +. ..+...+.|+ .+..+...+|.|. ...
T Consensus 214 ~~~s~~K~~-----g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~---~~~ 268 (400)
T 3vax_A 214 ISISGHKIG-----APKGVGALVTRRREEMDDERVPLEPIMFGG-----------------GQERKLRPGTLPV---PLI 268 (400)
T ss_dssp EEEETGGGT-----SCSSCEEEEECBCSSSTTCBCCCCCSSCSS-----------------CTGGGTSCSCCCH---HHH
T ss_pred EEEeHHHhC-----CCCceEEEEEecchhccccccccCceecCC-----------------CceeeeecCCCCH---HHH
Confidence 999983353 234578888 8763 21 1222111110 0111223344444 344
Q ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCC---cceEEEecCC--HHHHHHHHHHcCceeee
Q 001990 427 LANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPF---FDTVKVKCAD--AHAIASAAYKIEMNLRV 501 (985)
Q Consensus 427 ~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~---~~~~~i~~~~--~~~l~~~L~~~Gi~~~~ 501 (985)
.++.+++ ..+ .++++++.++..++++++.+.|+ ..++++..... ...+.+..++ ..++.+.|. +||.++.
T Consensus 269 ~a~~~al--~~~-~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~gi~v~~ 343 (400)
T 3vax_A 269 MGLAEAA--KIF-EAEHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQDHVVPHILNLSFEDVDAEAFLVTLK-DLVAVAT 343 (400)
T ss_dssp HHHHHHH--HHH-HHSHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHH-HHHHHTT
T ss_pred HHHHHHH--HHH-HhhHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCcccCCCCEEEEEeCCCCHHHHHHHHh-cCcEEEe
Confidence 4444444 222 34789999999999999999999 63488874321 2356666654 888999999 9996542
Q ss_pred e-------------------c----CCeEEEEe-ccCCCHHHHHHHHHHHhC
Q 001990 502 V-------------------D----SNTVTASF-DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ~-------------------~----~~~lris~-~~~~t~edid~ll~~l~~ 529 (985)
- . ++.+|+++ +..+|++|+++++++|..
T Consensus 344 g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~ 395 (400)
T 3vax_A 344 GSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAK 395 (400)
T ss_dssp TTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC----------------
T ss_pred cccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHH
Confidence 1 0 48899999 999999999999999975
No 102
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.82 E-value=4.2e-19 Score=204.91 Aligned_cols=300 Identities=16% Similarity=0.147 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHH---HHHh--cCcEE
Q 001990 630 YQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA---TAAM--CGMKI 704 (985)
Q Consensus 630 ~~~~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~---~~~~--~G~~v 704 (985)
..++...+++++++++|.+...+++++|+++++.++.++. .++++|+++...|+.+.. .... .++++
T Consensus 69 ~~~~~~~~~~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~ 140 (417)
T 3n0l_A 69 VDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYAALI--------NPGDKILGMDLSHGGHLTHGAKVSSSGKMYES 140 (417)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHS--------CTTCEEEEECC----------------CCSEE
T ss_pred HHHHHHHHHHHHHHHhCCCCcceEeccHHHHHHHHHHHhc--------CCCCEEEecccccccccchhhhhhhhcceeee
Confidence 3344556778999999998876777888777655544331 467899999887765433 2222 45677
Q ss_pred EEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-CCC-cC
Q 001990 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-SPG-YI 782 (985)
Q Consensus 705 ~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~pn~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~-~~g-~~ 782 (985)
+.++++.++.+|+++|++++++ +++++|++++|| .|.+. |+++|+++|+++|+++|+|++|..+..... .+. ..
T Consensus 141 ~~~~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~-~G~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~ 216 (417)
T 3n0l_A 141 CFYGVELDGRIDYEKVREIAKK--EKPKLIVCGASA-YARVI-DFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP 216 (417)
T ss_dssp EEECCCTTSSCCHHHHHHHHHH--HCCSEEEECCSS-CCSCC-CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT
T ss_pred EeccCCCCCCcCHHHHHHHHHh--cCCeEEEECCcc-cCccC-CHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc
Confidence 7788877788999999999973 367888888887 48887 899999999999999999999854332110 111 11
Q ss_pred CCcEEEeCCcccccccCCCCCCcceeeeec-ccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHH
Q 001990 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 783 g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~-~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~ 861 (985)
++|++++|+||+| +||++|+++++ +++.+.+..... .++. .+ + ....+++..+.+.
T Consensus 217 ~~di~~~s~sK~l------~g~~~G~~~~~~~~~~~~~~~~~~------------~~~~--~~-~--~~~~~aa~~~a~~ 273 (417)
T 3n0l_A 217 YAHVVSSTTHKTL------RGPRGGIIMTNDEELAKKINSAIF------------PGIQ--GG-P--LMHVIAAKAVGFK 273 (417)
T ss_dssp TCSEEEEESSTTT------CSCSCEEEEESCHHHHHHHHHHHT------------TTTC--SS-C--CHHHHHHHHHHHH
T ss_pred cceEEEeeCcccc------CCCCeeEEEECCHHHHHHHhhhhC------------Cccc--CC-c--HHHHHHHHHHHHH
Confidence 4799999999988 35667999988 566544321100 0000 00 0 1111222233344
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC
Q 001990 862 MMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP 940 (985)
Q Consensus 862 ~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~p 940 (985)
....+++.+..++..++++++.+.|++ ++.+...+ ...+.+.+++.. .+.+...+.+.|.++||.+.....|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~l~~~gi~v~~~~~~ 346 (417)
T 3n0l_A 274 FNLSDEWKVYAKQVRTNAQVLANVLMDRKFKLVSDG---TDNHLVLMSFLD----REFSGKDADLALGNAGITANKNTVP 346 (417)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGS---CSSSEEEEECTT----SSSCHHHHHHHHHHTTEECEECCCT
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhCCceeccCC---CCceEEEEEccc----CCCCHHHHHHHHHHcCeEEeccccC
Confidence 444456777778888889999999987 44432211 122335566542 2567889999999999987532211
Q ss_pred -------CCCEEEEeccCC----CCHHhhchHHHHHHHHHHHHHH
Q 001990 941 -------VPGTLMIEPTES----ESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 941 -------v~~~lris~t~~----~t~eeId~~~~~i~aL~~i~~~ 974 (985)
.++.+|+++... .+++||+ +++++|++++++
T Consensus 347 ~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~---~~~~~l~~~l~~ 388 (417)
T 3n0l_A 347 GEIRSPFITSGLRLGTPALTARGFKEKEME---IVSNYIADILDD 388 (417)
T ss_dssp TCCSCTTTCSEEEEECHHHHHTTCCHHHHH---HHHHHHHHHHHT
T ss_pred CCCcccCCCCeeEecCHHHhhCCCCHHHHH---HHHHHHHHHHhc
Confidence 236799987643 5789999 999999988753
No 103
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.82 E-value=3.4e-19 Score=201.18 Aligned_cols=296 Identities=12% Similarity=0.014 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHHHHHhhCCC-CcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001990 208 GRLESLLNFQTMIADLTGLP-MSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 208 g~l~~i~e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~ 286 (985)
+..+.+.++++.+++++|.+ ..++.+++|+|.++++++.++. . + ++++....|.+. .+...++..|++++.+
T Consensus 40 ~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~-~--~--~~i~~~~~~~~~--~~~~~~~~~g~~~~~v 112 (362)
T 3ffr_A 40 KFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV-E--K--KSFHCVNGSFSK--RFYEFAGELGREAYKE 112 (362)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC-S--S--EEEEEECSHHHH--HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc-C--C--cEEEEcCcHHHH--HHHHHHHHhCCCeEEE
Confidence 34577788899999999985 4678888999998888777653 1 3 666655555442 2222244568888887
Q ss_pred Cc--------hhhhccCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhC-CcEEEEEeccccccCCCCCCcccceEEEecC
Q 001990 287 DL--------KDIDYKSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHAN-GVKVVMATDLLALTILKPPGELGADIVVGSA 356 (985)
Q Consensus 287 ~~--------~~l~~l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~-galliV~a~~~alg~l~~p~~~GaDi~v~s~ 356 (985)
+. ++++ ++++|++|++.+| |++|.+.|+++|+++||++ |+++++|+ ..+.+....+.. .+|++++++
T Consensus 113 ~~~~~~~~d~~~l~-~~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~-a~~~~~~~~~~~-~~d~~~~s~ 189 (362)
T 3ffr_A 113 EAAFGKGFYPADIT-VPADAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDA-VSSLPYPKFDWT-KIDSVFFSV 189 (362)
T ss_dssp ECCTTCCCCGGGCC-CCTTCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEEC-TTTTTSSCCCTT-SCSEEEEET
T ss_pred ecCCCCCCCHHHHh-ccCCccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEec-ccccCCcccChh-HCcEEEEec
Confidence 54 2333 5678999999987 7899999999999999999 99999953 445554322211 299999998
Q ss_pred -ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccc-c-ccCCCccchhHHHHHHHHH
Q 001990 357 -QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR-D-KATSNICTAQALLANMAAM 433 (985)
Q Consensus 357 -k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rr-e-~atsni~t~~~l~a~~aa~ 433 (985)
|+|++ +||+|++++++++++++.....|. +.+.+.+++....+..++ . .+|.|. ....++.+++
T Consensus 190 ~K~~~~-----~~G~g~~~~~~~~~~~~~~~~~gg-----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~al 256 (362)
T 3ffr_A 190 QKCFGL-----PAGLGVWILNDRVIEKSKALLAKR-----KSIGTYHTIPSMLEKARVNQTPETPNA---MNIFLLGKVT 256 (362)
T ss_dssp TSTTCC-----CSCCEEEEEEHHHHHHHHHHHHTT-----CCCCSTTSHHHHHHHHTTTCCSSCCCH---HHHHHHHHHH
T ss_pred ccccCC-----CCceEEEEECHHHHHHhhhccccC-----CCCcccccHHHHHHHhhcCCCCCCchH---HHHHHHHHHH
Confidence 77753 356799999998877664332221 112222222111111111 1 233332 3444444444
Q ss_pred HHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcC-CC---CcceEEEecCC-HHHHHHHHHHcCceeee----ecC
Q 001990 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG-LP---FFDTVKVKCAD-AHAIASAAYKIEMNLRV----VDS 504 (985)
Q Consensus 434 y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~~---~~~~~~i~~~~-~~~l~~~L~~~Gi~~~~----~~~ 504 (985)
.++..+|++++.++..++++++++.|+++.|+++.. .+ ....+.+..++ +.++.++|.++||.++. ..+
T Consensus 257 --~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~ 334 (362)
T 3ffr_A 257 --GDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIVANTTMLPGEINKILEPFDMAVGAGYGSKKE 334 (362)
T ss_dssp --HHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEEEEESSCHHHHHHHHGGGTEEEEECSGGGTT
T ss_pred --HHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEEEecCCCHHHHHHHHHHCCeEEecCccccCC
Confidence 455566799999999999999999999993399875 21 12245566665 88999999999998864 235
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHh
Q 001990 505 NTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 505 ~~lris~~~~~t~edid~ll~~l~ 528 (985)
+.+|+|++..++++|+++++++|+
T Consensus 335 ~~iRis~~~~~~~e~i~~l~~~l~ 358 (362)
T 3ffr_A 335 TQIRIANFPAHSLEQVHKLVQTLK 358 (362)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 889999999999999999999986
No 104
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.82 E-value=1.6e-19 Score=207.67 Aligned_cols=292 Identities=14% Similarity=0.162 Sum_probs=199.0
Q ss_pred HHHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCC
Q 001990 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA 711 (985)
Q Consensus 632 ~~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~ 711 (985)
+...++++.+++++|.+ ..+++++|+++++.+ ++.+. .++++|+++...|+.+...++..|++++.++.
T Consensus 90 ~~~~~l~~~la~~~g~~-~~i~~~sGs~a~~~~---~~~~~-----~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-- 158 (401)
T 1fc4_A 90 DSHKELEQKLAAFLGME-DAILYSSCFDANGGL---FETLL-----GAEDAIISDALNHASIIDGVRLCKAKRYRYAN-- 158 (401)
T ss_dssp HHHHHHHHHHHHHHTCS-EEEEESCHHHHHHTT---HHHHC-----CTTCEEEEETTCCHHHHHHHHTSCSEEEEECT--
T ss_pred HHHHHHHHHHHHHhCCC-cEEEeCChHHHHHHH---HHHHc-----CCCCEEEEcchhHHHHHHHHHHcCCceEEECC--
Confidence 45678999999999998 456777887766443 33321 36788999999887777777889999998874
Q ss_pred CCCCCHHHHHHHHHhcCC---CeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CC-----CC-
Q 001990 712 KGNINIEELRKAAEANRD---NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TS-----PG- 780 (985)
Q Consensus 712 ~g~iDle~L~~~i~~~~~---~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~-~~-----~g- 780 (985)
+|+++|++++++..+ ++++|++++| |++|.+. |+++|.++|+++|+++|+|++|..+..+. .. .+
T Consensus 159 ---~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~-~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~ 234 (401)
T 1fc4_A 159 ---NDMQELEARLKEAREAGARHVLIATDGVFSMDGVIA-NLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDV 234 (401)
T ss_dssp ---TCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEEC-CHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTC
T ss_pred ---CCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCC-CHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCC
Confidence 489999999974222 7899999998 6799998 79999999999999999999985333211 00 11
Q ss_pred cCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHH
Q 001990 781 YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 781 ~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l 860 (985)
..+.|+++.|+||+|+ |++| |++++++++.+.+....... ..+.+. +...+.++.+.+
T Consensus 235 ~~~~di~~~s~sK~~~-----~~~g-G~~~~~~~~~~~l~~~~~~~----------~~~~~~------~~~~~~a~~~~l 292 (401)
T 1fc4_A 235 MGRVDIITGTLGKALG-----GASG-GYTAARKEVVEWLRQRSRPY----------LFSNSL------APAIVAASIKVL 292 (401)
T ss_dssp TTCCSEEEEESSSTTC-----SSSC-EEEEECHHHHHHHHHHCHHH----------HHSCCC------CHHHHHHHHHHH
T ss_pred CcCCcEEEecchhhcc-----CCCC-EEEEcCHHHHHHHHHhCcCc----------eeCCCC------CHHHHHHHHHHH
Confidence 1257999999999984 3343 89998877665432100000 000111 112223333444
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC
Q 001990 861 AMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW 939 (985)
Q Consensus 861 ~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~ 939 (985)
..+.. ..+..++..++++++.+.|++ ++.+. + ..+. .+.++++. +.+..++.+.|.++||.+....+
T Consensus 293 ~~~~~--~~~~~~~~~~~~~~l~~~L~~~g~~~~-~-~~~~---~~~~~~~~-----~~~~~~l~~~l~~~gi~v~~~~~ 360 (401)
T 1fc4_A 293 EMVEA--GSELRDRLWANARQFREQMSAAGFTLA-G-ADHA---IIPVMLGD-----AVVAQKFARELQKEGIYVTGFFY 360 (401)
T ss_dssp HHHHT--CHHHHHHHHHHHHHHHHHHHHTTCCBC-C-SSSS---EEEEEEEC-----HHHHHHHHHHHHHTTEECCEECT
T ss_pred HHHhc--CHHHHHHHHHHHHHHHHHHHHcCCccc-C-CCCC---EEEEEcCC-----hHHHHHHHHHHHHCCcEEeeecC
Confidence 44321 245566777888999999987 45443 2 1122 23455431 23567899999999998754332
Q ss_pred C-C---CCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 940 P-V---PGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 940 p-v---~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
+ . .+.+|++++..+|++|++ +++++|+++++++
T Consensus 361 ~~~~~~~~~iRi~~~~~~~~~~i~---~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 361 PVVPKGQARIRTQMSAAHTPEQIT---RAVEAFTRIGKQL 397 (401)
T ss_dssp TSSCTTCEEEEEECCTTCCHHHHH---HHHHHHHHHHHHT
T ss_pred CCCCCCCceEEEEeCCCCCHHHHH---HHHHHHHHHHHHh
Confidence 2 1 357999999999999999 9999999987754
No 105
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.82 E-value=4.2e-19 Score=203.27 Aligned_cols=300 Identities=14% Similarity=0.125 Sum_probs=194.4
Q ss_pred hcHHHHHHHHHHHHHHHhCCC--ccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEE
Q 001990 628 QGYQEMFNNLGEWLCTITGFD--SFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~~--~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v 704 (985)
+|..++.+.+.+++.+.+|.+ ... +++++|++++..+ ++.+. .++++|+++.+.|..+...++..|+++
T Consensus 68 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~---~~~l~-----~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 139 (385)
T 1b5p_A 68 AGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNL---FQAIL-----DPGDEVIVLSPYWVSYPEMVRFAGGVV 139 (385)
T ss_dssp TCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHH---HHHHC-----CTTCEEEEEESCCTHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHH---HHHhc-----CCCCEEEEcCCCchhHHHHHHHcCCEE
Confidence 465666666677776666753 334 4455555555333 33321 467899999988877777788899999
Q ss_pred EEEeCCC--CCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccccc-C-CC
Q 001990 705 VSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQV-G-LT 777 (985)
Q Consensus 705 ~~v~~~~--~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~--~di~eI~~la~~~g~lliVD~a~~~~~~-g-~~ 777 (985)
+.+|.++ ++.+|+++|+++++ +++++|++++| |++|.+. .++++|+++|+++|+++++|+++..... + ..
T Consensus 140 ~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~ 216 (385)
T 1b5p_A 140 VEVETLPEEGFVPDPERVRRAIT---PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHF 216 (385)
T ss_dssp EEEECCGGGTTCCCHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCC
T ss_pred EEeecCcccCCCCCHHHHHHhcC---CCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCC
Confidence 9999975 45799999999887 67999999999 5799984 2599999999999999999999853211 1 11
Q ss_pred CCCcC--CCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHH
Q 001990 778 SPGYI--GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 778 ~~g~~--g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~ 855 (985)
....+ +.++++.|++|+|+.| |.++|++++++++.+.+.... ...+.+.+ .....+
T Consensus 217 ~~~~~~~~~~i~~~s~SK~~~~~----G~RiG~~~~~~~~~~~l~~~~------------~~~~~~~~------~~~~~a 274 (385)
T 1b5p_A 217 SPGRVAPEHTLTVNGAAKAFAMT----GWRIGYACGPKEVIKAMASVS------------RQSTTSPD------TIAQWA 274 (385)
T ss_dssp CGGGTCTTTEEEEEESTTTTTCG----GGCCEEEECCHHHHHHHHHHH------------HTTTCSCC------HHHHHH
T ss_pred CHHHcCCCCEEEEEechhhcCCc----ccceEEEEeCHHHHHHHHHHH------------hhccCCCC------HHHHHH
Confidence 11222 4578889999998543 566999999877654432100 00111111 111112
Q ss_pred HHHHHHH--hchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCC
Q 001990 856 SYTYIAM--MGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGF 932 (985)
Q Consensus 856 A~a~l~~--lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi 932 (985)
+.+++.. .+.+.+.+..++..++.+++.+.|++ ++.+. .+++.++ +.++++. .+.+..++.+.|.++||
T Consensus 275 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~--~~~~~~~----~~~~~~~l~~~l~~~gv 346 (385)
T 1b5p_A 275 TLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAV--RPSGAFY--VLMDTSP----IAPDEVRAAERLLEAGV 346 (385)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBC--CCSBTTE--EEEECTT----TCSSHHHHHHHHHHTTE
T ss_pred HHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeec--CCCeeEE--EEEecCC----CCCCHHHHHHHHHHCCe
Confidence 2223321 02344556666777888889999987 44432 2222222 2344431 14578899999999999
Q ss_pred ccCCC-CCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHH
Q 001990 933 HGPTM-SWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 933 ~~~~~-~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
.+... .+..++.+||+++ +++++++ ++++.|+++++
T Consensus 347 ~v~~g~~f~~~~~iRis~~--~~~~~i~---~~l~~l~~~l~ 383 (385)
T 1b5p_A 347 AVVPGTDFAAFGHVRLSYA--TSEENLR---KALERFARVLG 383 (385)
T ss_dssp ECEESGGGTCTTEEEEECC--SCHHHHH---HHHHHGGGGC-
T ss_pred EEecccccCCCCeEEEEec--CCHHHHH---HHHHHHHHHHh
Confidence 87432 2323589999987 7889999 88888876543
No 106
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.82 E-value=1.6e-19 Score=207.71 Aligned_cols=303 Identities=12% Similarity=0.108 Sum_probs=202.2
Q ss_pred hcHHHHHHHHHHHHHHHhCCC----ccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcE
Q 001990 628 QGYQEMFNNLGEWLCTITGFD----SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~~----~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~ 703 (985)
.|..++.+++++++++++|.+ ...+++++|++++..++.++ ..++++|+++...|..+...++..|++
T Consensus 78 ~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l--------~~~gd~vl~~~~~~~~~~~~~~~~g~~ 149 (407)
T 3nra_A 78 RGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT--------VARGDKVAIVQPDYFANRKLVEFFEGE 149 (407)
T ss_dssp TCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTT--------CCTTCEEEEEESCCTHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHh--------CCCCCEEEEcCCcccchHHHHHHcCCE
Confidence 466778889999999999984 23355666666554333322 146789999998887777778899999
Q ss_pred EEEEeC------CCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccc
Q 001990 704 IVSVGT------DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 704 v~~v~~------~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~d---i~eI~~la~~~g~lliVD~a~~~~~ 773 (985)
++.+|+ +.++.+|+++|+++++ +++++|++++| |++|.+. + +++|+++|+++|+++++|++|....
T Consensus 150 ~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~Dea~~~~~ 225 (407)
T 3nra_A 150 MVPVQLDYVSADETRAGLDLTGLEEAFK---AGARVFLFSNPNNPAGVVY-SAEEIGQIAALAARYGATVIADQLYSRLR 225 (407)
T ss_dssp EEEEEBCCCSSCCSSCCBCHHHHHHHHH---TTCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSB
T ss_pred EEEeecccccccCcCCCcCHHHHHHHHh---hCCcEEEEcCCCCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 999998 3568899999999998 68889999999 4799987 5 9999999999999999999985321
Q ss_pred -cC--CCCC-----CcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccc
Q 001990 774 -VG--LTSP-----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAA 845 (985)
Q Consensus 774 -~g--~~~~-----g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~ 845 (985)
.+ .... ...+.++++.|+||+|+. .|.++|++++++++.+.+....... ..+++
T Consensus 226 ~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~l~~~~~~~--------------~~~~~ 287 (407)
T 3nra_A 226 YAGASYTHLRAEAAVDAENVVTIMGPSKTESL----SGYRLGVAFGSRAIIARMEKLQAIV--------------SLRAA 287 (407)
T ss_dssp CTTCCCCCGGGCTTSCGGGEEEEECSSSTTCC----GGGCCEEEEECHHHHHHHHHHHHHH--------------TSSSC
T ss_pred cCCCCCCChhhcCcccCCcEEEEeCcccccCC----CeeeEEEEEcCHHHHHHHHHHHhhh--------------ccCCC
Confidence 11 1110 124456889999999853 3677899999877765442110000 00111
Q ss_pred cchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHH
Q 001990 846 PWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAK 925 (985)
Q Consensus 846 ~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~ 925 (985)
..++ .++.+++. .+.+.+.+..++..++++++.+.|++...+.+..+.+.. .+.++++. .+.+..++.+
T Consensus 288 ~~~~----~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~ 356 (407)
T 3nra_A 288 GYSQ----AVLRGWFD-EAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGS--YLFPRLPK----LAVAPAEFVK 356 (407)
T ss_dssp HHHH----GGGGGTTC-CCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSS--EECCBCCC----BSSCHHHHHH
T ss_pred hHHH----HHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeE--EEEEeCCC----CCCCHHHHHH
Confidence 1111 11111121 122445666677778889999999863222221221211 12344431 1457889999
Q ss_pred HHHH-CCCccCCCC-C-C-CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHH
Q 001990 926 RLMD-YGFHGPTMS-W-P-VPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 926 ~L~e-~Gi~~~~~~-~-p-v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
.|.+ +||.+.... + + ..+.+|++++. |++||+ ++++.|++++++++
T Consensus 357 ~l~~~~gi~v~~g~~~~~~~~~~iRis~~~--~~~~i~---~~~~~l~~~~~~~~ 406 (407)
T 3nra_A 357 ILRLQAGVVVTPGTEFSPHTADSVRLNFSQ--DHEAAV---AAARRIVTLVERYR 406 (407)
T ss_dssp HHHHHHCEECEEGGGTCTTCTTBEEEECCS--CHHHHH---HHHHHHHHHHHHHB
T ss_pred HHHHhCCEEEeCchhhCCCCCCEEEEEeCC--CHHHHH---HHHHHHHHHHHHhh
Confidence 9975 599875322 1 1 35889999974 899999 99999999887653
No 107
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.82 E-value=5.3e-19 Score=202.16 Aligned_cols=296 Identities=11% Similarity=0.082 Sum_probs=197.4
Q ss_pred HHHHHHHHHHHHHHhC--CCccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEE
Q 001990 631 QEMFNNLGEWLCTITG--FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSV 707 (985)
Q Consensus 631 ~~~~~el~~~la~l~G--~~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v 707 (985)
.++..++++++++++| .+... +++++|++++..++.++. .++++|+++.+.|..+...++..|++++.+
T Consensus 70 ~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~ 141 (391)
T 4dq6_A 70 DSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELT--------KANDKIMIQEPVYSPFNSVVKNNNRELIIS 141 (391)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS--------CTTCEEEECSSCCTHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhC--------CCCCEEEEcCCCCHHHHHHHHHcCCeEEee
Confidence 4677889999999999 44544 555666666544443331 367899999988877777788899999999
Q ss_pred eCC--CC--CCCCHHHHHHHHHhcCCCeEEEEEEcC-CCcccc---ccCHHHHHHHHHHcCCEEEEEcccccccc-CC--
Q 001990 708 GTD--AK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVY---EEGIDEICKIIHDNGGQVYMDGANMNAQV-GL-- 776 (985)
Q Consensus 708 ~~~--~~--g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i---~~di~eI~~la~~~g~lliVD~a~~~~~~-g~-- 776 (985)
|++ .+ +.+|+++|+++++ + +++|++++| |++|.+ + ++++|+++|+++|+++|+|++|..... +-
T Consensus 142 ~~~~~~~~~~~~d~~~l~~~l~---~-~~~v~i~~p~nptG~~~~~~-~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~ 216 (391)
T 4dq6_A 142 PLQKLENGNYIMDYEDIENKIK---D-VKLFILCNPHNPVGRVWTKD-ELKKLGDICLKHNVKIISDEIHSDIILKKHKH 216 (391)
T ss_dssp CCEECTTSCEECCHHHHHHHCT---T-EEEEEEESSBTTTTBCCCHH-HHHHHHHHHHHTTCEEEEECTTTTCBCTTCCC
T ss_pred eeeecCCCceEeeHHHHHHHhh---c-CCEEEEECCCCCCCcCcCHH-HHHHHHHHHHHcCCEEEeeccccccccCCCCc
Confidence 987 33 3589999999997 5 999999999 579998 5 699999999999999999999853211 10
Q ss_pred CCCCcCCC-----cEEEeCCcccccccCCCCCCcceeeeecc-cccCcCCCCccccCCCCCCCCCCCCCCCcccccchhh
Q 001990 777 TSPGYIGA-----DVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 777 ~~~g~~g~-----Di~~~s~hKtl~~p~g~GGPg~G~l~~~~-~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~ 850 (985)
.....+.. .+++.|+||+|+. +|.++|++++++ ++.+.+...... ..+.+. +.
T Consensus 217 ~~~~~~~~~~~~~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~~~~-----------~~~~~~------~~ 275 (391)
T 4dq6_A 217 IPMASISKEFEKNTITCMAPTKTFNI----AGLQSSYVVLPDEKDYKLLDDAFTR-----------IDIKRN------NC 275 (391)
T ss_dssp CCGGGSCHHHHHTEEEEECSHHHHTC----GGGCCEEEECCSHHHHHHHHHHHHH-----------TTCCCC------CH
T ss_pred cCHHHcCccccCcEEEEEechhhccC----cccceEEEEeCCHHHHHHHHHHHHh-----------hcCCCC------CH
Confidence 11112222 3888999999953 356789998875 665443211000 001111 11
Q ss_pred hHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHH
Q 001990 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 851 ~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e 929 (985)
....++.+.+.. +.+.+.+..++..++++++.+.|++ ...+....+.+... +.++++. .+.+..++.+.|.+
T Consensus 276 ~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~l~~ 348 (391)
T 4dq6_A 276 FSLVATEASYNN-GESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEGTYL--LWVDFSA----LGLSDEELESILVQ 348 (391)
T ss_dssp HHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCSBSSE--EEEECGG----GCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCCccEE--EEEEhhh----cCCCHHHHHHHHHH
Confidence 222223333433 3344566677778888999999976 22333322222221 2355541 14678899999999
Q ss_pred C-CCccCCC-CC--CCCCEEEEeccCCCCHHhhchHHHHHHHHHHHH
Q 001990 930 Y-GFHGPTM-SW--PVPGTLMIEPTESESKVCHNREDLFFQILLSLT 972 (985)
Q Consensus 930 ~-Gi~~~~~-~~--pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~ 972 (985)
+ ||.+... .+ +..+.+|++++ ++++|++ ++++.|++++
T Consensus 349 ~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~---~~l~~l~~~l 390 (391)
T 4dq6_A 349 KGKVALNQGNSFGIGGSGYQRINLA--CPRSMLE---EALIRIKNAI 390 (391)
T ss_dssp TTCEECEEGGGGCTTCTTEEEEECC--SCHHHHH---HHHHHHHHHH
T ss_pred hCCEEeeCchhhCCCCCCeEEEEEc--CCHHHHH---HHHHHHHHHh
Confidence 8 9987432 12 22488999988 6899999 9999998764
No 108
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.82 E-value=2.3e-19 Score=206.12 Aligned_cols=295 Identities=14% Similarity=0.152 Sum_probs=201.1
Q ss_pred hcHHHHHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEE
Q 001990 628 QGYQEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSV 707 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v 707 (985)
.|..+...++++++++++|.+. .+++++|++++..++.++. .++++|+++.+.|+.+...++..|.+++.+
T Consensus 84 ~g~~~~~~~l~~~la~~~g~~~-v~~~~ggt~a~~~~~~~~~--------~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v 154 (398)
T 3a2b_A 84 NGTLDIHVELEEKLSAYVGKEA-AILFSTGFQSNLGPLSCLM--------GRNDYILLDERDHASIIDGSRLSFSKVIKY 154 (398)
T ss_dssp TCCCHHHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHSS--------CTTCEEEEETTCCHHHHHHHHHSSSEEEEE
T ss_pred cCCcHHHHHHHHHHHHHhCCCc-EEEECCHHHHHHHHHHHHh--------CCCCEEEECCccCHHHHHHHHHcCCceEEe
Confidence 4555678899999999999864 4666777776644433321 467899999998988887788899999999
Q ss_pred eCCCCCCCCHHHHHHHHHhcCC-CeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC--CCC-CcC
Q 001990 708 GTDAKGNINIEELRKAAEANRD-NLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL--TSP-GYI 782 (985)
Q Consensus 708 ~~~~~g~iDle~L~~~i~~~~~-~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~--~~~-g~~ 782 (985)
|. +|+++|+++++++.+ ++++|++++| |++|.+. |+++|.++|+++|+++++|+++..+..+. ... ..+
T Consensus 155 ~~-----~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~-~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~ 228 (398)
T 3a2b_A 155 GH-----NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIV-NLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHF 228 (398)
T ss_dssp CT-----TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBC-CHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHH
T ss_pred CC-----CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCcc-CHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhc
Confidence 86 589999999984322 7899999988 4799998 89999999999999999999986432111 011 111
Q ss_pred ----CCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHH
Q 001990 783 ----GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 783 ----g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a 858 (985)
++|+++.|+||+|+ .+| |++++++++.+.+....... ...... ....++++.+
T Consensus 229 ~~~~~~di~~~s~sK~~~------~~G-G~~~~~~~~~~~l~~~~~~~-----------~~~~~~-----~~~~~a~~~~ 285 (398)
T 3a2b_A 229 GLNDDVDLIMGTFSKSLA------SLG-GFVAGDADVIDFLKHNARSV-----------MFSASM-----TPASVASTLK 285 (398)
T ss_dssp TCGGGCSEEEEESSSTTC------SSC-EEEEECHHHHHHHHHHCHHH-----------HSSBCC-----CHHHHHHHHH
T ss_pred CCCcCCeEEEeccccccc------CCC-cEEEeCHHHHHHHHHhcccc-----------eecCCC-----CHHHHHHHHH
Confidence 36999999999984 234 89999887665432100000 000011 1111222234
Q ss_pred HHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC
Q 001990 859 YIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 859 ~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~ 937 (985)
.+..+ +.+.+..++..++++++.+.|++ ++.+. .+.+ +.+.+.++ .+.+..++.+.|.++||.+...
T Consensus 286 ~l~~~--~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~g---~~~~~~~~-----~~~~~~~l~~~l~~~gi~v~~~ 353 (398)
T 3a2b_A 286 ALEII--QNEPEHIEKLWKNTDYAKAQLLDHGFDLG--ATES---PILPIFIR-----SNEKTFWVTKMLQDDGVFVNPV 353 (398)
T ss_dssp HHHHH--HHCTHHHHHHHHHHHHHHHHHHHTTCCBC--SCCS---SEEEEECC-----CHHHHHHHHHHHHHTTEECEEE
T ss_pred HHHHH--hhCHHHHHHHHHHHHHHHHHHHhcCCCcC--CCCC---CEEEEEcC-----CHHHHHHHHHHHHHCCcEEEee
Confidence 44433 12345566777888999999987 44432 2222 22345543 1235678999999999987543
Q ss_pred CCC----CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 938 SWP----VPGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 938 ~~p----v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
..+ ..+.+|++++..+|++|++ +++++|+++++++
T Consensus 354 ~~~~~~~~~~~iRis~~~~~~~e~i~---~~~~~l~~~l~~~ 392 (398)
T 3a2b_A 354 VSPAVPAEESLIRFSLMATHTYDQID---EAIEKMVKVFKQA 392 (398)
T ss_dssp CTTTSCGGGCEEEEECCTTCCHHHHH---HHHHHHHHHHHHC
T ss_pred CCCCCCCCCceEEEEEeCCCCHHHHH---HHHHHHHHHHHHh
Confidence 221 1478999999989999999 9999999887653
No 109
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.82 E-value=4.2e-19 Score=204.27 Aligned_cols=292 Identities=20% Similarity=0.180 Sum_probs=194.5
Q ss_pred HHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcH---HHHHhcCc--EEEEEeCCC
Q 001990 637 LGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP---ATAAMCGM--KIVSVGTDA 711 (985)
Q Consensus 637 l~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~---~~~~~~G~--~v~~v~~~~ 711 (985)
+++++++++|.+...+++++|++++..++.++. .++++|+++...|+.+. ..++..|. +++.+++++
T Consensus 74 ar~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 145 (407)
T 2dkj_A 74 AIERAKALFGAAWANVQPHSGSQANMAVYMALM--------EPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRP 145 (407)
T ss_dssp HHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------CTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCT
T ss_pred HHHHHHHHhCCCcceEEecchHHHHHHHHHHhc--------CCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCc
Confidence 456999999998766777788776644443331 36789999998887763 33444555 555555443
Q ss_pred -CCCCCHHHHHHHHHhcCCCeEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC---CCCcCCCcEE
Q 001990 712 -KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT---SPGYIGADVC 787 (985)
Q Consensus 712 -~g~iDle~L~~~i~~~~~~t~~Vvi~~pn~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~---~~g~~g~Di~ 787 (985)
++.+|+++|++++++ +++++|++++|+. |.+. |+++|.++|+++|+++|+|++|..+..... .+.. ..|++
T Consensus 146 ~~~~~d~~~l~~~l~~--~~~~~v~~~~p~~-~~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~ 220 (407)
T 2dkj_A 146 DTELIDLEEVRRLALE--HRPKVIVAGASAY-PRFW-DFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLP-YAHVV 220 (407)
T ss_dssp TTSSCCHHHHHHHHHH--HCCSEEEECCSSC-CSCC-CHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTT-TCSEE
T ss_pred ccCccCHHHHHHHHhh--cCCeEEEEecccc-CCCC-CHHHHHHHHHHcCCEEEEEccccccccccCccCCccc-cccEE
Confidence 578999999999973 2688888877764 5666 899999999999999999999865332111 1112 37999
Q ss_pred EeCCcccccccCCCCCCcceeeeec-ccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhchh
Q 001990 788 HLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 788 ~~s~hKtl~~p~g~GGPg~G~l~~~-~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~ 866 (985)
++|+||++ +||.+|+++++ +++.+.+...... ...+++ ....++++.+.+..+..+
T Consensus 221 ~~s~sK~l------~g~~~G~~~~~~~~~~~~l~~~~~~---------~~~~~~--------~~~~~~a~~~al~~~~~~ 277 (407)
T 2dkj_A 221 TSTTHKTL------RGPRGGLILSNDPELGKRIDKLIFP---------GIQGGP--------LEHVIAGKAVAFFEALQP 277 (407)
T ss_dssp EEESSGGG------CCCSCEEEEESCHHHHHHHHHHHTT---------TTCSSC--------CHHHHHHHHHHHHHHHSH
T ss_pred EEeccccC------CCCCceEEEECCHHHHHHHHhhhcc---------cccCCC--------cHHHHHHHHHHHHHHHHh
Confidence 99999977 35666999998 6765543210000 000111 111122233445544445
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC------
Q 001990 867 GLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW------ 939 (985)
Q Consensus 867 gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~------ 939 (985)
++.+..++..++++++.+.|++ ++.+..+ +.. .+.+.++++. .+.+..++.+.|.++||.+.....
T Consensus 278 ~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~--~~~~~~~~~~----~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~ 350 (407)
T 2dkj_A 278 EFKEYSRLVVENAKRLAEELARRGYRIVTG-GTD--NHLFLVDLRP----KGLTGKEAEERLDAVGITVNKNAIPFDPKP 350 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEGGG-SCS--SSEEEEECGG----GTCCHHHHHHHHHHTTEECEECCCTTCSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCceeecC-CCC--ceEEEEECcc----cCCCHHHHHHHHHHcCceecCCcCcccccc
Confidence 6777778888899999999987 4433211 111 2234555541 135788899999999998753221
Q ss_pred C-CCCEEEEeccCC----CCHHhhchHHHHHHHHHHHHHH
Q 001990 940 P-VPGTLMIEPTES----ESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 940 p-v~~~lris~t~~----~t~eeId~~~~~i~aL~~i~~~ 974 (985)
+ .++.+|++++.. .|++|++ +++++|++++++
T Consensus 351 ~~~~~~iRis~~~~~~~~~~~~~i~---~~~~~l~~~~~~ 387 (407)
T 2dkj_A 351 PRVTSGIRIGTPAITTRGFTPEEMP---LVAELIDRALLE 387 (407)
T ss_dssp TTTCSEEEEECHHHHHTTCCGGGHH---HHHHHHHHHHHH
T ss_pred ccCCCceeeecccccccCCCHHHHH---HHHHHHHHHHhc
Confidence 1 257899998764 7999999 999999998876
No 110
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.82 E-value=3e-19 Score=206.13 Aligned_cols=285 Identities=15% Similarity=0.114 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCCCC
Q 001990 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~~g 713 (985)
..++++++++++|.+.. +++++|+++++.++.++. .+++.|+++...|+.+...+...|.+++.++.
T Consensus 106 ~~~l~~~la~~~g~~~~-i~~~sGt~a~~~~l~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~---- 172 (409)
T 3kki_A 106 KPMIEKRLAKFTGFDEC-LLSQSGWNANVGLLQTIC--------QPNTNVYIDFFAHMSLWEGARYANAQAHPFMH---- 172 (409)
T ss_dssp SCHHHHHHHHHHTCSEE-EEESCHHHHHHHHHHHHC--------CTTCEEEEETTSCHHHHHHHHHTTCEEEEECT----
T ss_pred HHHHHHHHHHHhCCCeE-EEecchHHHHHHHHHHhc--------CCCCEEEECCCcCHHHHHHHHHcCCeEEEecC----
Confidence 44788999999998874 566788776654444331 47889999999888777778889999988875
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCC-------CcCCCc
Q 001990 714 NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP-------GYIGAD 785 (985)
Q Consensus 714 ~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~-------g~~g~D 785 (985)
.|+++|++++++ .++++|++++| |++|.+. |+++|+++|+++|+++++|++|..+..+.... ...++|
T Consensus 173 -~d~~~le~~l~~--~~~~~vi~~~~~nptG~~~-~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~d 248 (409)
T 3kki_A 173 -NNCDHLRMLIQR--HGPGIIVVDSIYSTLGTIA-PLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVH 248 (409)
T ss_dssp -TCHHHHHHHHHH--HCSCEEEEESBCTTTCCBC-CHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCS
T ss_pred -CCHHHHHHHHHh--cCCeEEEECCCCCCCCCcC-CHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCC
Confidence 589999999984 24688999988 5799998 79999999999999999999986432221000 112579
Q ss_pred EEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhch
Q 001990 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~ 865 (985)
+++.+++|+|+. + +|++++++++.+.+....... ..++ . . ....++++.+.+..+..
T Consensus 249 i~~~s~sK~~~~------~-gg~v~~~~~~~~~~~~~~~~~---------~~~~-~--~----~~~~~aa~~aal~~~~~ 305 (409)
T 3kki_A 249 FMTASLAKTFAY------R-AGAIWCNNEVNRCVPFISYPA---------IFSS-T--L----LPYEAAGLETTLEIIES 305 (409)
T ss_dssp EEEEESSSTTCS------S-CEEEEESSSGGGTHHHHCHHH---------HHSB-C--C----CHHHHHHHHHHHHHHHH
T ss_pred EEEeecchhhCC------C-ceEEEECHHHHHHHHHhCcCc---------cccC-C--C----cHHHHHHHHHHHHHHhc
Confidence 999999999842 2 488988887766542110000 0000 0 1 11222333344444322
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC----
Q 001990 866 KGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP---- 940 (985)
Q Consensus 866 ~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~p---- 940 (985)
. .+..++..++++++.+.|++ ++.+. + .+.. +.+.+.. ..+..++.+.|.++||.+....+|
T Consensus 306 ~--~~~~~~~~~~~~~l~~~L~~~g~~~~--~-~~~~---~~~~~~~-----~~~~~~~~~~L~~~Gv~v~~~~~~~~~~ 372 (409)
T 3kki_A 306 A--DNRRQHLDRMARKLRIGLSQLGLTIR--S-ESQI---IGLETGD-----ERNTEKVRDYLESNGVFGSVFCRPATSK 372 (409)
T ss_dssp C--HHHHHHHHHHHHHHHHHHHTTTCCCC--C-SSSE---EEEEEES-----HHHHHHHHHHHHHTTEECEEECTTSSCT
T ss_pred C--HHHHHHHHHHHHHHHHHHHHcCCccC--C-CCCE---EEEEeCC-----HHHHHHHHHHHHHCCceEeeeCCCCcCC
Confidence 2 34556677888999999987 55543 2 1222 3344331 124567999999999987543333
Q ss_pred CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 941 VPGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 941 v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
..+.+|++++..+|++||+ +++++|+++++.
T Consensus 373 ~~~~iRi~~~~~~t~e~i~---~~~~~l~~~l~~ 403 (409)
T 3kki_A 373 NKNIIRLSLNSDVNDEQIA---KIIEVCSDAVNY 403 (409)
T ss_dssp TCEEEEEECCTTCCHHHHH---HHHHHHHHHHHH
T ss_pred CCcEEEEEccCCCCHHHHH---HHHHHHHHHHhc
Confidence 1368999999999999999 999999988764
No 111
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.82 E-value=2.9e-19 Score=203.75 Aligned_cols=296 Identities=14% Similarity=0.114 Sum_probs=191.2
Q ss_pred hcHHHHHHHHHHHHHHHhCCC---c-cceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcE
Q 001990 628 QGYQEMFNNLGEWLCTITGFD---S-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~~---~-~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~ 703 (985)
+|..++.+.+.+++.+.+|.+ . ..++.++|++++..++.++. .++++|+++.+.|..+...++..|++
T Consensus 63 ~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~--------~~gd~vl~~~p~y~~~~~~~~~~g~~ 134 (376)
T 2dou_A 63 SCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALT--------EPEDLLLLPEVAYPSYFGAARVASLR 134 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSCCHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhc--------CCCCEEEECCCCcHhHHHHHHHcCCE
Confidence 455555555555555555875 2 33555666665544333321 36789999888776666667789999
Q ss_pred EEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cC-CCC
Q 001990 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VG-LTS 778 (985)
Q Consensus 704 v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~--di~eI~~la~~~g~lliVD~a~~~~~-~g-~~~ 778 (985)
++.+|.+.+..+|+++|+++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++++|++|.... .+ ...
T Consensus 135 ~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~ 211 (376)
T 2dou_A 135 TFLIPLREDGLADLKAVPEGVW---REAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPS 211 (376)
T ss_dssp EEEECBCTTSSBCGGGSCHHHH---HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCC
T ss_pred EEEeeCCCCCCCCHHHHHHhhc---cCceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCC
Confidence 9999984334689999999997 67899999988 47898862 47899999999999999999985322 11 101
Q ss_pred C----CcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHH
Q 001990 779 P----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 779 ~----g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~ 854 (985)
. +..+.++++.|+||+|+. +|.++|++++++++.+.+...... .+.+ . +.....
T Consensus 212 ~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~l~~~~~~------------~~~~--~----~~~~~~ 269 (376)
T 2dou_A 212 PLALPGAKERVVELFSLSKSYNL----AGFRLGFALGSEEALARLERVKGV------------IDFN--Q----YAGVLR 269 (376)
T ss_dssp GGGSTTGGGTEEEEEEHHHHHTC----GGGCCEEEEECHHHHHHHHHHHHH------------HCCC--S----CHHHHH
T ss_pred hhhcCCCCCcEEEEecchhhcCC----hhheeEEEecCHHHHHHHHHHHHh------------cccC--C----CHHHHH
Confidence 1 223567888999999853 356789999988776544211000 0001 1 111222
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCcc
Q 001990 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHG 934 (985)
Q Consensus 855 ~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~ 934 (985)
++.+++.. +.+.+.+..++..++++++.+.|++. +....+.+..+ +.++++ .+.+..++.+.|.++||.+
T Consensus 270 a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~l~~~gi~v 339 (376)
T 2dou_A 270 MGVEALKT-PKEVVRGYARVYRERALGMAEALKGV--LSLLPPRATMY--LWGRLP-----EGVDDLEFGLRLVERGVAL 339 (376)
T ss_dssp HHHHHHTS-CHHHHHHHHHHHHHHHHHHHHHHTTT--SEECCCCBSSE--EEEECC-----TTCCHHHHHHHHHHTTEEC
T ss_pred HHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHh--cCccCCCeeEE--EEEECC-----CCCCHHHHHHHHHHCCEEE
Confidence 23333332 24456666667778889999999774 33322222221 335553 2456788999999999987
Q ss_pred CCCC-CC--CCCEEEEeccCCCCHHhhchHHHHHHHHHHH
Q 001990 935 PTMS-WP--VPGTLMIEPTESESKVCHNREDLFFQILLSL 971 (985)
Q Consensus 935 ~~~~-~p--v~~~lris~t~~~t~eeId~~~~~i~aL~~i 971 (985)
.... +. .++.+|++++. +++|++ ++++.|+++
T Consensus 340 ~~g~~f~~~~~~~~Ris~~~--~~~~i~---~~l~~l~~~ 374 (376)
T 2dou_A 340 APGRGFGPGGKGFVRIALVR--PLEELL---EAAKRIREA 374 (376)
T ss_dssp EEGGGGCGGGTTEEEEECCS--CHHHHH---HHHHHHHHT
T ss_pred cCchhhCCCCCCeEEEEecC--CHHHHH---HHHHHHHHH
Confidence 4321 21 24789999974 789999 999888765
No 112
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.82 E-value=6.8e-19 Score=204.75 Aligned_cols=315 Identities=13% Similarity=0.103 Sum_probs=194.4
Q ss_pred hcHHHHHHHHHHHHHHHhCC--Cccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCC--EEEEcCCCCCCcHHHHHhcCc
Q 001990 628 QGYQEMFNNLGEWLCTITGF--DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRN--VCIIPVSAHGTNPATAAMCGM 702 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~--~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~--~Vlv~~~~Hg~~~~~~~~~G~ 702 (985)
.|..++.+.+.+++.+.+|. +... +++++|++++..++.++. ...+++ +|+++.+.|..+...++..|+
T Consensus 82 ~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~------~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~ 155 (437)
T 3g0t_A 82 DGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVAN------RTHKNREYGTLFIDPGFNLNKLQCRILGQ 155 (437)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHT------TSCTTCSCCEEEEESCCHHHHHHHHHHTC
T ss_pred CChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHh------cCCCCCccEEEEeCCCcHhHHHHHHHcCC
Confidence 34444455555555555554 3333 455666655543333321 002567 899988877666666778899
Q ss_pred EEEEEeCCCC-CCCCHHHHHHHHHhcCCCeEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEcccccccc-CC-
Q 001990 703 KIVSVGTDAK-GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQV-GL- 776 (985)
Q Consensus 703 ~v~~v~~~~~-g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~--di~eI~~la~~~g~lliVD~a~~~~~~-g~- 776 (985)
+++.++++++ +.+|+++|+++++. +++++|++++| |++|.+.+ ++++|+++|+++|+++|+|++|..... +.
T Consensus 156 ~~~~v~~~~~~~~~d~~~l~~~l~~--~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~ 233 (437)
T 3g0t_A 156 KFESFDLFEYRGEKLREKLESYLQT--GQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDY 233 (437)
T ss_dssp CCEEEEGGGGCTTHHHHHHHHHHTT--TCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCC
T ss_pred EEEEEeecCCCCccCHHHHHHHHhc--CCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCc
Confidence 9999998644 46899999999931 68899999999 57998862 488899999999999999999853111 11
Q ss_pred ---------CCCC-cCCCcEEEeCCcccccccCCCCCCcceeeeecccccC-cCCCCccccCCCC-----CCCCCCCCCC
Q 001990 777 ---------TSPG-YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP-FLPSHPVVSTGGI-----PAPEKSQPLG 840 (985)
Q Consensus 777 ---------~~~g-~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~-~lpg~~~g~~~~~-----~~~~~~~~t~ 840 (985)
.... ..+.++++.|+||+|+. .|.++|++++++++.+ .++...-...+.. ... .... .
T Consensus 234 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~ 307 (437)
T 3g0t_A 234 SHPGEPLYQPSVANYTDNYILALSSSKAFSY----AGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSS-ALYA-L 307 (437)
T ss_dssp CSTTSSCCCCCGGGTCSCEEEEEESTTTTSC----GGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTT-HHHH-H
T ss_pred CcccccchhhccCCCCCcEEEEEcCccCCCC----ccceeEEEEECHHHhhhhhhcccccccccchhHHHHHH-HHhh-h
Confidence 1111 24567889999999853 3677999999987766 4110000000000 000 0000 0
Q ss_pred CcccccchhhhHHHHHHHHHHHhchhh---HHHHHHHHHHHHHHHHHHHhc-cCCee------EcCCCCceeEEEEEEec
Q 001990 841 TIAAAPWGSALILPISYTYIAMMGSKG---LTEASKIAILNANYMAKRLEK-HYPIL------FRGVNGTVAHEFIVDLR 910 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~A~a~l~~lg~~g---l~~~~~~~~~~a~~l~~~L~~-~~~i~------~~g~~~~~~~~~vv~~~ 910 (985)
..+. +.....++.+++... .+. +.+..++..++++++.+.|++ ++.+. .+ +.... .+.++++
T Consensus 308 ~~~~----~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~-~~~~~--~~~~~~~ 379 (437)
T 3g0t_A 308 SSGA----THSAQWGMAAMLKAC-NDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNEP-LADGF--YFTVGYK 379 (437)
T ss_dssp HSSS----CHHHHHHHHHHHHHH-HTTSCCHHHHHHHHHHHHHHHHHHHHTTTEEESSCEETTEE-CCSSS--EEEEEET
T ss_pred cCCC----CHHHHHHHHHHHhCc-HhHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEeccccCCCC-CceeE--EEEEecC
Confidence 0011 112222233334332 112 666777888889999999987 33332 11 01222 2345553
Q ss_pred CccccCCCCHHHHHHHHHHCCCccCCCC-C--CCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 911 GLKNTAGIEPEDVAKRLMDYGFHGPTMS-W--PVPGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 911 ~~~~~~g~~~~~l~~~L~e~Gi~~~~~~-~--pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
+.+..++.+.|.++||.+.... + +.++.+|++++. .|++|++ +++++|++++++
T Consensus 380 ------~~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~iRis~~~-~~~e~i~---~~~~~l~~~~~~ 436 (437)
T 3g0t_A 380 ------GMDSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICTSL-LPESQFP---DLEKRLQMLNAE 436 (437)
T ss_dssp ------TCCHHHHHHHHHHTTEECEESTTTTCCCTTCEEEECSS-SCGGGHH---HHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHcCeEEeeccccCCCCCCEEEEEEec-CCHHHHH---HHHHHHHHHHhc
Confidence 4678999999999999874322 1 112789999984 4999999 999999987653
No 113
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.82 E-value=2.4e-20 Score=213.01 Aligned_cols=299 Identities=10% Similarity=-0.000 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHHHHhCCCcc--cee-cChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHH--HHhcCcEE
Q 001990 630 YQEMFNNLGEWLCTITGFDSF--SLQ-PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT--AAMCGMKI 704 (985)
Q Consensus 630 ~~~~~~el~~~la~l~G~~~~--~~~-~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~--~~~~G~~v 704 (985)
+.+.++++++.+++++|++.. .++ +.+|++++ .+++..+. .+++++++....|-++++. ++..| ++
T Consensus 70 ~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~---n~ai~~l~-----~~gd~v~~~~~~~~~~~~~~~a~~~G-~v 140 (386)
T 3qm2_A 70 FIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQF---AGVPLNLL-----GDKTTADYVDAGYWAASAIKEAKKYC-AP 140 (386)
T ss_dssp ---CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHH---HHHHHHHC-----TTCCEEEEEESSHHHHHHHHHHTTTS-EE
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHH---HHHHHhcc-----CCCCeEEEEeCCHHHHHHHHHHHHhC-Ce
Confidence 456788999999999999642 344 35666554 34444432 3567776544434345543 34578 99
Q ss_pred EEEeCC--CCCC-CCHHHHHHHHHhcCCCeEEEEEEcC-CCcccc-ccCHHHHHHHHHHcCCEEEEEccccccccCCCCC
Q 001990 705 VSVGTD--AKGN-INIEELRKAAEANRDNLSTLMVTYP-STHGVY-EEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 779 (985)
Q Consensus 705 ~~v~~~--~~g~-iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i-~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~ 779 (985)
++++++ ++|. +|+++++++++ ++|++|++++. |.+|++ + ||++|+ +|++++||++|+.+...+ +.
T Consensus 141 ~~v~~~~~~~G~~~~~~~~~~~l~---~~t~lV~~~h~et~tG~~i~-pi~~i~-----~g~~~~vDa~qs~g~~pi-dv 210 (386)
T 3qm2_A 141 QIIDAKITVDGKRAVKPMREWQLS---DNAAYLHYCPNETIDGIAID-ETPDFG-----PEVVVTADFSSTILSAPL-DV 210 (386)
T ss_dssp EEEECEEEETTEEEECCGGGCCCC---TTCSCEEECSEETTTTEECC-CCCCCC-----TTCCEEEECTTTTTSSCC-CG
T ss_pred EEEecCcccCCCCCCchHHHhhcC---CCCcEEEEECCcCCcCEecC-chhhhc-----CCCEEEEEcccccCCCCC-Cc
Confidence 999987 5775 88888888776 78998888874 568995 7 899886 799999999997665544 34
Q ss_pred CcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCC---ccccCCCCCCCCCCCCCCCcccccchhhhHHHHH
Q 001990 780 GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSH---PVVSTGGIPAPEKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 780 g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~---~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A 856 (985)
.++ |++++++||++ |.+|+|++++++++.+.+++. ++.+... .......+|+++.+ . ..+.
T Consensus 211 ~~~--~~~~~s~hK~l------GP~G~g~l~v~~~~~~~~~~~~p~~~~~~~~-~~~~~~~gTp~v~~----i-~~l~-- 274 (386)
T 3qm2_A 211 SRY--GVIYAGAQKNI------GPAGLTLVIVREDLLGKAHESCPSILDYTVL-NDNDSMFNTPPTFA----W-YLSG-- 274 (386)
T ss_dssp GGC--SEEEEETTTTT------CCTTEEEEEEEGGGCSCCCTTSCGGGCHHHH-HHC-------CCSH----H-HHHH--
T ss_pred ccc--CEEEEeccccc------CCCccEEEEECHHHHhhhcccCCcHHHHHHH-hhcCCCCCCCcHHH----H-HHHH--
Confidence 455 46779999998 345899999998877655421 1110000 00112235666552 1 1222
Q ss_pred HHHHHHhchh-hHHHHHHHHHHHHHHHHHHHhccCCeeE-cCC-CCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCc
Q 001990 857 YTYIAMMGSK-GLTEASKIAILNANYMAKRLEKHYPILF-RGV-NGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 933 (985)
Q Consensus 857 ~a~l~~lg~~-gl~~~~~~~~~~a~~l~~~L~~~~~i~~-~g~-~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~ 933 (985)
++++.+..+ |+.++.++..+++++++++|++. ++.. ..+ .......+.|.++. .+.+ .++...|.++||.
T Consensus 275 -~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~rs~~iv~f~~~~----~~~~-~~~~~~L~~~gI~ 347 (386)
T 3qm2_A 275 -LVFKWLKAQGGVAAMHKINQQKAELLYGVIDNS-DFYRNDVAQANRSRMNVPFQLAD----NTLD-KVFLEESFAAGLH 347 (386)
T ss_dssp -HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTC-SSEECCBCGGGBCSSEEEEEESS----GGGH-HHHHHHHHHTTEE
T ss_pred -HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCHHHcCceEEEEECCC----cccc-HHHHHHHHHCCCE
Confidence 334444455 78888888999999999999872 2211 111 11111234555531 1234 5777789999998
Q ss_pred cCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 934 GPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 934 ~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
+..-... .+.+|+|+..++|+|||| +|+++|+++.++
T Consensus 348 ~~~g~~~-~~~iRiS~~~~~t~edId---~l~~~l~~~~~~ 384 (386)
T 3qm2_A 348 ALKGHRV-VGGMRASIYNAMPIEGVK---ALTDFMIDFERR 384 (386)
T ss_dssp CCBCCTT-TCSEEEECCTTSCHHHHH---HHHHHHHHHHHH
T ss_pred EeCCCCC-cCeEEEEcCCCCCHHHHH---HHHHHHHHHHHh
Confidence 6432111 256999999999999999 999999998764
No 114
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.81 E-value=9.2e-19 Score=198.07 Aligned_cols=315 Identities=11% Similarity=0.010 Sum_probs=207.4
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCcccccc--CCChh----hHhhHHHHHHHHHHHHHHHhhCCCC-cceee-ccchHHHHH
Q 001990 171 IGMGYYNTHVPPVILRNIMENPAWYTQY--TPYQA----EIAQGRLESLLNFQTMIADLTGLPM-SNASL-LDEGTAAAE 242 (985)
Q Consensus 171 lG~g~~~~~~p~~v~~~i~~~~~~~t~~--~py~~----e~sqg~l~~i~e~q~~ia~L~g~~~-~~~sl-~~~~ta~~e 242 (985)
.++| |..+|+.|.+++..- +..| +|... .-++...+.+.++++.+++|+|++. .++.+ +.+||.+++
T Consensus 9 f~pg--pt~~~~~V~~a~~~~---~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n 83 (361)
T 3m5u_A 9 FSAG--PSTLPLEILEQAQKE---LCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFA 83 (361)
T ss_dssp CCSS--SCCCCHHHHHHHHHT---SSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHH
T ss_pred ecCC--CCCCcHHHHHHHHHH---HHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHH
Confidence 3566 456888887666642 2222 22110 1134557889999999999999964 46666 788998888
Q ss_pred HHHHHhhhhcCCCCEE--EEcC-CCChhHHHHHHHhhcCCCeEEEEeCchh-------h--hccCCCEeEEEEEcC-CCC
Q 001990 243 AMAMCNNIQKGKKKTF--IIAS-NCHPQTIDICITRADGFDIKVVVSDLKD-------I--DYKSGDVCGVLVQYP-GTE 309 (985)
Q Consensus 243 a~~~a~~~~~~~g~~V--lv~~-~~h~s~~~~~~~~a~~~gi~v~~~~~~~-------l--~~l~~~t~~V~v~~p-n~~ 309 (985)
+++..+. ++|++ +++. ..|+ |...++..|+++++++.+. . + ++++|++|++++. |.+
T Consensus 84 ~~~~~~~----~~~~~~~i~~~~~~~~-----~~~~a~~~G~~v~~~~~~~~g~~~~~~~~~-l~~~t~lv~~~~~e~~t 153 (361)
T 3m5u_A 84 MIPMNLA----LNGVCEYANTGVWTKK-----AIKEAQILGVNVKTVASSEESNFDHIPRVE-FSDNADYAYICSNNTIY 153 (361)
T ss_dssp HHHHHHC----CSSCEEEEECSHHHHH-----HHHHHHHTTCCEEEEEECTTTTSCSCCCCC-CCTTSSEEEEESEETTT
T ss_pred HHHHhcC----CCCeEEEEeCCHHHHH-----HHHHHHHcCCceEEEecccCcCCCcCChhh-cCCCCCEEEEeCCCCCc
Confidence 8776653 34543 3332 3333 2233445677777765421 1 2 6678999988764 789
Q ss_pred eeeccHHHHHHHHHhCCcEEEEEeccccccCCCCCCcccceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceee
Q 001990 310 GEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVG 389 (985)
Q Consensus 310 G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~p~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG 389 (985)
|++.|. |+ + +|++++||+ ..++|.++-.-+ ++|++++++|++.+| ||+|++++++++++.+++....
T Consensus 154 G~~~~~--i~---~-~~~~~~vD~-~q~~g~~~id~~-~~d~~~~s~~K~~gp-----~G~g~l~~~~~~~~~~~~~~~p 220 (361)
T 3m5u_A 154 GTQYQN--YP---K-TKTPLIVDA-SSDFFSRKVDFS-NIALFYGGVQKNAGI-----SGLSCIFIRKDMLERSKNKQIP 220 (361)
T ss_dssp TEECSS--CC---C-CSSCEEEEC-GGGTTSSCCCCT-TEEEEEEETTTTSSC-----TTCEEEEEEHHHHHHHHTCCCC
T ss_pred ceeCCc--cc---c-cCCEEEEEc-ccccCCCCCCcc-cCCEEEEechhccCC-----CccEEEEEcHHHHhhhcCCCCC
Confidence 998662 33 3 499999954 346665432212 479999999544235 5789999999988776432111
Q ss_pred eeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHHHHHHHhcCCCE-
Q 001990 390 VSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKLGTV- 467 (985)
Q Consensus 390 ~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g~~- 467 (985)
..+++....+ .....+|+|+ .+++++.+++ .++..+ |++++.+|+.+++++++++|+++||+
T Consensus 221 ----------~~~~~~~~~~-~~~~~~Tp~v---~~i~~l~~al--~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~ 284 (361)
T 3m5u_A 221 ----------SMLNYLTHAE-NQSLFNTPPT---FAIYMFNLEM--DWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFY 284 (361)
T ss_dssp ----------GGGCHHHHHH-TTTCSSCCCH---HHHHHHHHHH--HHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSE
T ss_pred ----------ceeehHHHhh-cCCCCCCccH---HHHHHHHHHH--HHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCee
Confidence 0111110000 1112378887 6778888887 666677 89999999999999999999999655
Q ss_pred EEcCCC--Cc-ceEEEecCC----HHHHHHHHHHcCceeeee--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 468 EVQGLP--FF-DTVKVKCAD----AHAIASAAYKIEMNLRVV--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 468 ~~~~~~--~~-~~~~i~~~~----~~~l~~~L~~~Gi~~~~~--~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+++.++ .. ..++|.+++ ..++.+.|.++||.++.- ..+.+|+|++.+||++|||+|+++|+.
T Consensus 285 ~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~ 355 (361)
T 3m5u_A 285 KGHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKE 355 (361)
T ss_dssp EESSCGGGBCSSEEEEEESSCTTHHHHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eccCCHHHcCCeEEEEECCCchhhhHHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHH
Confidence 664321 22 246676653 357888999999987542 126799999999999999999999973
No 115
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.81 E-value=1.5e-18 Score=198.77 Aligned_cols=319 Identities=15% Similarity=0.094 Sum_probs=214.8
Q ss_pred CCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHHHHHHHHHhhCCCCc-ceeeccchHHHHHHHHHHhhhhcCCCC
Q 001990 178 THVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMS-NASLLDEGTAAAEAMAMCNNIQKGKKK 256 (985)
Q Consensus 178 ~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g~~~~-~~sl~~~~ta~~ea~~~a~~~~~~~g~ 256 (985)
...|+.+.+++.+.-. . .|.+ ...+...++++.+++++|.+.. ++.+++|+|.+++.++.++ +. +||
T Consensus 28 ~~~~~~v~~a~~~~~~--~---~~~~----~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~~--~gd 95 (393)
T 2huf_A 28 SNAPQRVLDAMSRPIL--G---HLHP----ETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNL-LE--DGD 95 (393)
T ss_dssp CCCCHHHHHHTTSCCC--C---TTSH----HHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHH-CC--TTC
T ss_pred CCCCHHHHHHHHhhhc--c---CCCH----HHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHH-hC--CCC
Confidence 3467777655443211 1 1222 2345677889999999999875 6778899998888877665 23 789
Q ss_pred EEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHhC
Q 001990 257 TFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHAN 325 (985)
Q Consensus 257 ~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~--------~~l~~-l~~-~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~ 325 (985)
+|+++...|+++. +...++..|.+++.++. +++++ +++ ++++|++++| |++|.+.|+++|.++|+++
T Consensus 96 ~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~ 173 (393)
T 2huf_A 96 VILIGHTGHWGDR--SADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQH 173 (393)
T ss_dssp EEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHT
T ss_pred EEEEECCCcchHH--HHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHHHHHHHHHc
Confidence 9999999998853 22223456888877753 45555 666 7899999987 7899999999999999999
Q ss_pred CcEEEEEeccccccCCC-CCCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEe
Q 001990 326 GVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVA 403 (985)
Q Consensus 326 galliV~a~~~alg~l~-~p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~ 403 (985)
|+++++|. ..+++... ...++|+|+++++. |+|++ +||.|++++++++++.+.....+ ...|.+.
T Consensus 174 ~~~li~D~-a~~~~~~~~~~~~~~~d~~~~s~sK~l~g-----~~G~G~~~~~~~~~~~~~~~~~~-------~~~~~~~ 240 (393)
T 2huf_A 174 NCLLIVDT-VASLGGAPMFMDRWEIDAMYTGSQKVLGA-----PPGITPVSFSHRAVERYKRRNTK-------VKVYYWD 240 (393)
T ss_dssp TCEEEEEC-TTTBTTBCCCTTTTTCSEEECCSSSTTCC-----CSSCEEEEECHHHHHHHHTCSSC-------CSCGGGC
T ss_pred CCEEEEEc-ccccCCCCcchhhcCccEEEECCCccccc-----CCCeEEEEECHHHHHHHhhcCCC-------CceEEEc
Confidence 99999953 34555332 23567899999998 76753 35668999998887765211000 0001100
Q ss_pred c------ccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCC--Cc
Q 001990 404 M------QTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP--FF 475 (985)
Q Consensus 404 l------~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~--~~ 475 (985)
. ....+..+...+|+|+ ....++.+++ ..+..+|++++.++..++++++++.|+++| +++..+. ..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~ 314 (393)
T 2huf_A 241 MSLVGDYWGCFGRPRIYHHTISS---TLLYGLREAI--AMACEEGLPALIARHEDCAKRLYRGLQDAG-FELYADPKDRL 314 (393)
T ss_dssp HHHHHHHTTCSSSCCCCSCCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBSSCGGGBC
T ss_pred hHHHHhhhccccccCCCCCCCCH---HHHHHHHHHH--HHHHHhCHHHHHHHHHHHHHHHHHHHHHcC-CeeccCccccC
Confidence 0 0001112233355554 3343444444 444445788999999999999999999986 8776432 12
Q ss_pred c-eEEEecC-C--HHHHHHHHHHc-Cceeeee----cCCeEEEEeccC-CCHHHHHHHHHHHhC
Q 001990 476 D-TVKVKCA-D--AHAIASAAYKI-EMNLRVV----DSNTVTASFDET-TTLEDVDKLFIVFAG 529 (985)
Q Consensus 476 ~-~~~i~~~-~--~~~l~~~L~~~-Gi~~~~~----~~~~lris~~~~-~t~edid~ll~~l~~ 529 (985)
. .+.+..+ + ..++.++|.++ ||.++.. .++.+|++++.+ ++++|+++++++|..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~ 378 (393)
T 2huf_A 315 STVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQE 378 (393)
T ss_dssp TTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHH
Confidence 2 4556664 3 78899999865 9988642 357899999554 579999999999974
No 116
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.81 E-value=7.5e-19 Score=217.10 Aligned_cols=305 Identities=14% Similarity=0.103 Sum_probs=202.8
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCCC
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~~ 712 (985)
.+.+.++.+++++|.+...++++++++++.+++.++. .++|+||++...|.++...+...|+++++++.+.+
T Consensus 206 ~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~--------~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~ 277 (755)
T 2vyc_A 206 AFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACM--------TDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRN 277 (755)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHC--------CTTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBC
T ss_pred HHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhc--------CCCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCC
Confidence 4678899999999998765556655566655544432 47899999999998877778889999999987643
Q ss_pred -----CCC-----CHHHHHHHHHhcCCCe--------EEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccc-
Q 001990 713 -----GNI-----NIEELRKAAEANRDNL--------STLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ- 773 (985)
Q Consensus 713 -----g~i-----Dle~L~~~i~~~~~~t--------~~Vvi~~pn~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~- 773 (985)
|.+ |+++|+++|+++ +++ ++|++++||++|.+. |+++|+++||++|+++++|+||....
T Consensus 278 ~~g~~g~i~~~~~d~e~le~~i~~~-~~~k~~~~~~~klvil~~pn~~G~v~-dl~~I~~ia~~~~~~livDeA~~~~~~ 355 (755)
T 2vyc_A 278 RYGIIGPIYPQEMQPETLQKKISES-PLTKDKAGQKPSYCVVTNCTYDGVCY-NAKEAQDLLEKTSDRLHFDEAWYGYAR 355 (755)
T ss_dssp TTSCBCCCCGGGGSHHHHHHHHHHC-TTTGGGTTCCCSCEEEESSCTTSEEE-CHHHHHHHHTTTCSEEEEECTTCTTGG
T ss_pred ccccccccCcCCCCHHHHHHHHHhC-ccccccccCCCeEEEEECCCCCceec-CHHHHHHHHHHcCCEEEEECcCchhcc
Confidence 346 999999999753 234 388999999999998 89999999999999999999985321
Q ss_pred -cCC---CCCCcCC--CcE------EEeCCcccccccCCCCCC-cceeeeeccc--ccCcCC-CCccccCCCCCCCCCCC
Q 001990 774 -VGL---TSPGYIG--ADV------CHLNLHKTFCIPHGGGGP-GMGPIGVKKH--LAPFLP-SHPVVSTGGIPAPEKSQ 837 (985)
Q Consensus 774 -~g~---~~~g~~g--~Di------~~~s~hKtl~~p~g~GGP-g~G~l~~~~~--l~~~lp-g~~~g~~~~~~~~~~~~ 837 (985)
... ..+. .+ +|+ +++|+||+++ || ++|++++++. ...... ..... ....
T Consensus 356 ~~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L~------g~~~g~~i~~~~~~~~i~~~~~~~~~~--------~~~s 420 (755)
T 2vyc_A 356 FNPIYADHYAM-RGEPGDHNGPTVFATHSTHKLLN------ALSQASYIHVREGRGAINFSRFNQAYM--------MHAT 420 (755)
T ss_dssp GCGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSSS------CCTTCEEEEEECCBTCCCHHHHHHHHH--------HTSC
T ss_pred cCcccCCcchh-cCCcCCccCCCeEEEECcccccc------CcCCeeeeeecCcccccCHHHHHHHHH--------HhCC
Confidence 111 1122 56 676 8999999973 55 4778888765 221000 00000 0011
Q ss_pred CCCCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc--c---------CCeeEcCC---------
Q 001990 838 PLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--H---------YPILFRGV--------- 897 (985)
Q Consensus 838 ~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~--~---------~~i~~~g~--------- 897 (985)
++++. ..+++..+++..+..+|..+..++..+++++++++|++ + +++..+..
T Consensus 421 ~sp~~--------~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (755)
T 2vyc_A 421 TSPLY--------AICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKT 492 (755)
T ss_dssp SSCCH--------HHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEECTTTCCE
T ss_pred CCHHH--------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhccccccccc
Confidence 11111 11122223344555554456677888889999999976 3 32211000
Q ss_pred ---------------------------------CCc-e--eEEEEEEecCcc-----ccCCCCHHHHHHHHHHCCCccCC
Q 001990 898 ---------------------------------NGT-V--AHEFIVDLRGLK-----NTAGIEPEDVAKRLMDYGFHGPT 936 (985)
Q Consensus 898 ---------------------------------~~~-~--~~~~vv~~~~~~-----~~~g~~~~~l~~~L~e~Gi~~~~ 936 (985)
.+. . ...+.+++++.. ...|+++..+.+.|.++||.+..
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~ 572 (755)
T 2vyc_A 493 YDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTR 572 (755)
T ss_dssp EEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSE
T ss_pred cccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEee
Confidence 000 0 012344443211 01257779999999999998753
Q ss_pred CCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHH
Q 001990 937 MSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 937 ~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
.. .+.+|++++..+|++|++ +++++|.++.+...
T Consensus 573 ~~---~~~v~~~~~~g~t~~~~~---~l~~al~~~~~~~~ 606 (755)
T 2vyc_A 573 TT---DFQIMFLFSMGVTRGKWG---TLVNTLCSFKRHYD 606 (755)
T ss_dssp EC---SSEEEEECCTTCCTTTTH---HHHHHHHHHHHHHH
T ss_pred cC---CCeEEEEECCCCCHHHHH---HHHHHHHHHHHhhh
Confidence 32 488999999999999999 99999999877654
No 117
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.81 E-value=5.9e-19 Score=202.88 Aligned_cols=299 Identities=17% Similarity=0.167 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHH-H--HHhcC--cEEE
Q 001990 631 QEMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA-T--AAMCG--MKIV 705 (985)
Q Consensus 631 ~~~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~-~--~~~~G--~~v~ 705 (985)
.++.+++++++++++|.+...+++++|++++..++.++. .++++|+++...|+.+.. . +...| ++++
T Consensus 68 ~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~~~a~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~ 139 (405)
T 2vi8_A 68 DIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVL--------EHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFV 139 (405)
T ss_dssp HHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------CTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEE
T ss_pred HHHHHHHHHHHHHHhCCCceEEEecCcHHHHHHHHHHhc--------CCCCEEEEecccccchhcccchhhhccceeEEE
Confidence 344445778999999998766667778776654444331 367899999988887643 1 12334 4888
Q ss_pred EEeCC-CCCCCCHHHHHHHHHhcCCCeEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-CCCc-C
Q 001990 706 SVGTD-AKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-SPGY-I 782 (985)
Q Consensus 706 ~v~~~-~~g~iDle~L~~~i~~~~~~t~~Vvi~~pn~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~-~~g~-~ 782 (985)
.++++ .++.+|+++|++++++ .++++|++ +|+..|... |+++|+++|+++|+++|+|++|..+..+.. .+.. .
T Consensus 140 ~~~~~~~~~~~d~~~l~~~i~~--~~~~~v~~-~~~~~~~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~ 215 (405)
T 2vi8_A 140 AYGVDPETHVIDYDDVREKARL--HRPKLIVA-AAAAYPRII-DFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVP 215 (405)
T ss_dssp EECBCTTTCSBCHHHHHHHHHH--HCCSEEEE-CCSSCCSCC-CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTT
T ss_pred ecccccccCCcCHHHHHHHHHh--cCCeEEEE-eCCCCCccC-CHHHHHHHHHHcCCEEEEEccccccccccCcCCCccc
Confidence 88875 4678999999999983 26777776 444457665 799999999999999999999864332111 1111 1
Q ss_pred CCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHH
Q 001990 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 783 g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~ 862 (985)
++|++++|+||+|+ |++| |++++++++.+.+...... ...++++ ...++++.+.+..
T Consensus 216 ~~di~~~s~sK~~~-----g~~g-G~~~~~~~~~~~l~~~~~~---------~~~~~~~--------~~~~aa~~~al~~ 272 (405)
T 2vi8_A 216 YAHFVTTTTHKTLR-----GPRG-GMILCQEQFAKQIDKAIFP---------GIQGGPL--------MHVIAAKAVAFGE 272 (405)
T ss_dssp TCSEEEEESSSTTC-----CCSC-EEEEECHHHHHHHHHHHTT---------TTCSSCC--------HHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCC-----CCCC-eEEEEcHHHHHHHHhhhcc---------cccCCCC--------HHHHHHHHHHHHH
Confidence 58999999999984 2334 9999987765443210000 0001111 1112222344444
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC---
Q 001990 863 MGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS--- 938 (985)
Q Consensus 863 lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~--- 938 (985)
+..+++.+..++..++++++.+.|++ ++.+. ++.+ ..+.+.++++. .+.+..++.+.|.++||.+....
T Consensus 273 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~-~~~~~~~~~~~----~~~~~~~~~~~l~~~gi~v~~g~~~~ 345 (405)
T 2vi8_A 273 ALQDDFKAYAKRVVDNAKRLASALQNEGFTLV--SGGT-DNHLLLVDLRP----QQLTGKTAEKVLDEVGITVNKNTIPY 345 (405)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEG--GGSC-SSSEEEEECGG----GTCCHHHHHHHHHHHTEECEEECCTT
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhCCCeEe--cCCC-CceEEEEEccC----CCCCHHHHHHHHHHcCceeccCcCcc
Confidence 44456777778888999999999987 44332 2111 12234555541 14567889999999999875321
Q ss_pred ---CC-CCCEEEEeccC----CCCHHhhchHHHHHHHHHHHHHH
Q 001990 939 ---WP-VPGTLMIEPTE----SESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 939 ---~p-v~~~lris~t~----~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
.+ .++.+|++++. ..+++|++ +++++|++++++
T Consensus 346 ~~~~~~~~~~iRis~~~~~~~~~~~~~i~---~~~~~l~~~~~~ 386 (405)
T 2vi8_A 346 DPESPFVTSGIRIGTAAVTTRGFGLEEMD---EIAAIIGLVLKN 386 (405)
T ss_dssp CSSCTTTCSEEEEECHHHHHTTCCHHHHH---HHHHHHHHHHTC
T ss_pred ccCCCCCCCceEEeeeeeeecCCCHHHHH---HHHHHHHHHHhc
Confidence 11 24689999986 46899999 999999988754
No 118
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.81 E-value=4.1e-19 Score=200.20 Aligned_cols=291 Identities=15% Similarity=0.153 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHH--HHhc--CcEEEEEe
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT--AAMC--GMKIVSVG 708 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~--~~~~--G~~v~~v~ 708 (985)
...++++++++++|.+...+++++|+++++.++.+++ .++++|+++...|+.+... +... |.+++.+|
T Consensus 44 ~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 115 (356)
T 1v72_A 44 LTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMT--------PPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVD 115 (356)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSC--------CTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECC
T ss_pred HHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHhc--------CCCCEEEEcCccchhhhhchHHHHHhCCcEEEEec
Confidence 4678999999999942224677888876654444321 3678899998877654433 5555 99999998
Q ss_pred CCCCCCCCHHHHHH-HHHhc----CCCeEEEEEEcCCCccc---cccCHHHHHHHHHHcCCEEEEEccccccc---cCCC
Q 001990 709 TDAKGNINIEELRK-AAEAN----RDNLSTLMVTYPSTHGV---YEEGIDEICKIIHDNGGQVYMDGANMNAQ---VGLT 777 (985)
Q Consensus 709 ~~~~g~iDle~L~~-~i~~~----~~~t~~Vvi~~pn~~G~---i~~di~eI~~la~~~g~lliVD~a~~~~~---~g~~ 777 (985)
.+ ++.+|+++|++ ++++. ++++++|++++|+.+|. .+ ++++|+++|++||+++|+|+++.... .+.
T Consensus 116 ~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~tG~~~~~~-~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~- 192 (356)
T 1v72_A 116 GP-AAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLD-EIEAIGDVCKSSSLGLHMDGSRFANALVSLGC- 192 (356)
T ss_dssp CG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHH-HHHHHHHHHHHTTCEEEEEETTHHHHHHHHTC-
T ss_pred CC-CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCCCCccCCHH-HHHHHHHHHHHcCCeEEEEchhhHhHhccCCC-
Confidence 75 57899999999 88731 12689999999876898 44 79999999999999999999985321 121
Q ss_pred CCCc----CCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHH
Q 001990 778 SPGY----IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 778 ~~g~----~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~ 853 (985)
.+.. .++|++++++||+ +.| .|.|++++++++.+.+.. .... .+ .... .. .
T Consensus 193 ~~~~~~~~~~~d~~~~s~sK~-g~~-----~G~g~~~~~~~~~~~~~~-~~~~----------~~--~~~~----~~--~ 247 (356)
T 1v72_A 193 SPAEMTWKAGVDALSFGATKN-GVL-----AAEAIVLFNTSLATEMSY-RRKR----------AG--HLSS----KM--R 247 (356)
T ss_dssp CTTTTTGGGTCCEEEECCGGG-TCS-----SCEEEEESSGGGHHHHHH-HHHH----------TT--CCCS----ST--H
T ss_pred CHHHhhhhhcCCEEEEecccC-CCc-----CccEEEEECHHHHhhHHH-Hhhc----------cC--chhh----hH--H
Confidence 2222 3689999999998 322 245788888776654321 0000 01 1111 00 1
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCc
Q 001990 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 933 (985)
Q Consensus 854 ~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~ 933 (985)
.++...+..+..+.+.+..++..++++++.+.|++...+....+... +.+.++++ .++.+.|.++||.
T Consensus 248 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~--~~~~~~~~----------~~~~~~l~~~gi~ 315 (356)
T 1v72_A 248 FLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEA--NILFCRLD----------SAMIDALLKAGFG 315 (356)
T ss_dssp HHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCS--SEEEEEEC----------HHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCc--cEEEEEcC----------HHHHHHHHhcCeE
Confidence 11223344454444555566677888999999976223322222111 12334432 3789999999998
Q ss_pred cCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 934 GPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 934 ~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
+....++ ++.+|++++..+|++|++ +++++|++++++.
T Consensus 316 v~~g~~~-~~~iRi~~~~~~~~~~i~---~~~~~l~~~l~~~ 353 (356)
T 1v72_A 316 FYHDRWG-PNVVRFVTSFATTAEDVD---HLLNQVRLAADRT 353 (356)
T ss_dssp CBCSSSS-TTEEEEECCTTCCHHHHH---HHHHHHHHTC---
T ss_pred EeccccC-CCeEEEEecCCCCHHHHH---HHHHHHHHHHHhh
Confidence 7533343 589999999999999999 9999999876654
No 119
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.81 E-value=7.7e-19 Score=199.72 Aligned_cols=289 Identities=11% Similarity=0.052 Sum_probs=189.4
Q ss_pred hcHHHHHHHHHHHHHHHhCC--Ccc-ceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEE
Q 001990 628 QGYQEMFNNLGEWLCTITGF--DSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~--~~~-~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v 704 (985)
+|..++.+.+.+++.+.+|. +.. .+++++|++++..++.++. .++++|++++..|..+...++..|.++
T Consensus 66 ~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~ 137 (370)
T 2z61_A 66 RGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSII--------DDGDEVLIQNPCYPCYKNFIRFLGAKP 137 (370)
T ss_dssp TCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSCCTHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhc--------CCCCEEEEeCCCchhHHHHHHHcCCEE
Confidence 35445555555555555553 333 3556667766644443321 367899999988877777788899999
Q ss_pred EEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcCC-CccccccCHHHHHHHHHHcCCEEEEEcccccccc-C-CCCC--
Q 001990 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV-G-LTSP-- 779 (985)
Q Consensus 705 ~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~pn-~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~-g-~~~~-- 779 (985)
+.+| +|+++|+++++ +++++|++++|+ ++|.+. |++ |.++|+++|+++++|++|..... + ....
T Consensus 138 ~~v~------~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~ 206 (370)
T 2z61_A 138 VFCD------FTVESLEEALS---DKTKAIIINSPSNPLGEVI-DRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIE 206 (370)
T ss_dssp EEEC------SSHHHHHHHCC---SSEEEEEEESSCTTTCCCC-CHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGG
T ss_pred EEeC------CCHHHHHHhcc---cCceEEEEcCCCCCcCccc-CHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHH
Confidence 9888 69999999997 689999999994 799998 788 99999999999999999864221 1 1111
Q ss_pred --CcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHH
Q 001990 780 --GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISY 857 (985)
Q Consensus 780 --g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~ 857 (985)
+..+.|+++.|+||+|+. .|.++|++++++++.+.+.....+ .+.+. +.....++.
T Consensus 207 ~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~~~------------~~~~~------~~~~~~a~~ 264 (370)
T 2z61_A 207 FDENLEKTILINGFSKLYAM----TGWRIGYVISNDEIIEAILKLQQN------------LFISA------PTISQYAAL 264 (370)
T ss_dssp TCTTCSSEEEEEESTTTTTC----GGGCCEEEECCHHHHHHHHHHHHH------------HTSSS------CHHHHHHHG
T ss_pred ccCCCCcEEEEecChhccCC----ccceEEEEEECHHHHHHHHHHHhh------------cccCC------CHHHHHHHH
Confidence 123678999999999853 345689999998776544211000 00011 111112222
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHH-HCCCccC
Q 001990 858 TYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYGFHGP 935 (985)
Q Consensus 858 a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~-e~Gi~~~ 935 (985)
+++..++.+.+.+..++..++++++.+.|++ ++.+. .+.+..+ +.++++ + +..++.+.|. ++||.+.
T Consensus 265 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~--~~~~~~------~-~~~~~~~~l~~~~gi~v~ 333 (370)
T 2z61_A 265 KAFEKETEREINSMIKEFDRRRRLVLKYVKDFGWEVN--NPIGAYY--VFPNIG------E-DGREFAYKLLKEKFVALT 333 (370)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCC--CCCBTTE--ECCBCS------S-CHHHHHHHHHHHHCEECE
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCeec--CCCcceE--EEEecC------C-CHHHHHHHHHHhCCEEEe
Confidence 3333213455666667778888999999987 33332 2222211 223432 2 6788999997 7899874
Q ss_pred CCC-CC--CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHH
Q 001990 936 TMS-WP--VPGTLMIEPTESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 936 ~~~-~p--v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
... +. .++.+|++++ +++++++ ++++.|+++++
T Consensus 334 ~g~~f~~~~~~~~Ri~~~--~~~~~i~---~~~~~l~~~l~ 369 (370)
T 2z61_A 334 PGIGFGSKGKNYIRISYA--NSYENIK---EGLERIKEFLN 369 (370)
T ss_dssp EGGGGCGGGSSBEEEECC--SCHHHHH---HHHHHHHHHHC
T ss_pred CchhhCCCCCCEEEEEEe--CCHHHHH---HHHHHHHHHHh
Confidence 321 21 2478999998 6999999 99999987653
No 120
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.81 E-value=9.5e-19 Score=200.62 Aligned_cols=293 Identities=12% Similarity=0.088 Sum_probs=193.7
Q ss_pred hcHHHHHHHHHHHHHHHhCC--Cccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEE
Q 001990 628 QGYQEMFNNLGEWLCTITGF--DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~--~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v 704 (985)
+|..++.+.+.+++.+.+|. +... +++++|++++..++.++ . .++++|++++..|..+...++..|+++
T Consensus 78 ~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l---~-----~~gd~Vl~~~~~~~~~~~~~~~~g~~~ 149 (389)
T 1o4s_A 78 RGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMAL---L-----DPGDEVIVFSPVWVSYIPQIILAGGTV 149 (389)
T ss_dssp TCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHH---C-----CTTCEEEEEESCCTTHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHh---C-----CCCCEEEEcCCCchhHHHHHHHcCCEE
Confidence 35555555666666666686 3333 45566666654443332 1 367899999988888877788899999
Q ss_pred EEEeCCC--CCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccccc-C-CC
Q 001990 705 VSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQV-G-LT 777 (985)
Q Consensus 705 ~~v~~~~--~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~--~di~eI~~la~~~g~lliVD~a~~~~~~-g-~~ 777 (985)
+.+|.++ ++.+|+++|+++++ +++++|++++| |++|.+. .++++|+++|+++|+++++|+++..... + ..
T Consensus 150 ~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~ 226 (389)
T 1o4s_A 150 NVVETFMSKNFQPSLEEVEGLLV---GKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFT 226 (389)
T ss_dssp EEEECCGGGTTCCCHHHHHHTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCC
T ss_pred EEEecCCccCCCCCHHHHHHhcc---cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC
Confidence 9999875 36789999999987 68999999998 4699985 1499999999999999999999863221 1 00
Q ss_pred CCC----cCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHH
Q 001990 778 SPG----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 778 ~~g----~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~ 853 (985)
... ..+.|+++.|+||+|+. .|.++|++++++++.+.+.....+ .+.+.+ ....
T Consensus 227 ~~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~l~~~~~~~~~l~~~~~~------------~~~~~~------~~~~ 284 (389)
T 1o4s_A 227 SILDVSEGFDRIVYINGFSKSHSM----TGWRVGYLISSEKVATAVSKIQSH------------TTSCIN------TVAQ 284 (389)
T ss_dssp CHHHHCSSSTTEEEEEESTTTTTC----GGGCCEEEECCHHHHHHHHHHHHH------------HTCSCC------HHHH
T ss_pred CHhhcCCCCCcEEEEeechhhcCC----cccceEEEEeCHHHHHHHHHHhhh------------cccCCC------HHHH
Confidence 111 14679999999999853 345689999988766543211000 011111 1111
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHH-HCC
Q 001990 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYG 931 (985)
Q Consensus 854 ~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~-e~G 931 (985)
.++ +..+.. ++.+..++..++++++.+.|++ ++.+. .+.+..+ +.++++ .+..++.+.|. ++|
T Consensus 285 ~a~---~~~l~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~--~~~~~~-------~~~~~l~~~l~~~~g 349 (389)
T 1o4s_A 285 YAA---LKALEV-DNSYMVQTFKERKNFVVERLKKMGVKFV--EPEGAFY--LFFKVR-------GDDVKFCERLLEEKK 349 (389)
T ss_dssp HHH---HHHTTC-CCHHHHHHHHHHHHHHHHHHHHTTCCCC--CCSBSSE--EEEECS-------SCHHHHHHHHHHHHC
T ss_pred HHH---HHHHhc-cHHHHHHHHHHHHHHHHHHHHhcCCeee--cCCcceE--EEEeCC-------CCHHHHHHHHHHHCC
Confidence 112 223322 3556667778888999999987 44432 2222221 233432 35788999997 889
Q ss_pred CccCCC-CCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHH
Q 001990 932 FHGPTM-SWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 932 i~~~~~-~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
|.+... .+..++.+|++++ +++++++ ++++.|+++++
T Consensus 350 i~v~~g~~f~~~~~~Ris~~--~~~~~l~---~~l~~l~~~l~ 387 (389)
T 1o4s_A 350 VALVPGSAFLKPGFVRLSFA--TSIERLT---EALDRIEDFLN 387 (389)
T ss_dssp EECEEGGGGTCTTEEEEECC--SCHHHHH---HHHHHHHHHHT
T ss_pred EEEeCchhcCCCCeEEEEEe--CCHHHHH---HHHHHHHHHHh
Confidence 987432 2323579999998 4899999 99999887653
No 121
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.81 E-value=1.4e-17 Score=197.39 Aligned_cols=358 Identities=13% Similarity=0.104 Sum_probs=226.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCc---cceecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHHH
Q 001990 140 KFSKFDEGLTESQMIEHMQKLASMNKV---YKSFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNF 216 (985)
Q Consensus 140 ~lp~~~~~~se~e~~~~~~~~~~~n~~---~~~~lG~g~~~~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e~ 216 (985)
.+| ..+.+-.++++++.+....+.. ...|+|....+...|+++. .++.. +...+......+.+..+...+.
T Consensus 72 ~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~v~~-~~~~~---~~n~~~~~~~~~~~~~~le~~~ 145 (497)
T 2qma_A 72 DLD--NKNAPLKSVIDDVAELVAKNAIFTQHPDCIAHLHTPPLMPAVAA-EAMIA---ALNQSMDSWDQASSATYVEQKV 145 (497)
T ss_dssp CSS--SCCCCHHHHHHHHHHHTTTTSCCTTSTTBCSSSCCCCBHHHHHH-HHHHH---HHCCCTTCGGGCHHHHHHHHHH
T ss_pred CCC--CCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeCCCCCcHHHHHH-HHHHH---hhcccccchhhChHHHHHHHHH
Confidence 456 4678889999999875444321 2346666655544555543 44321 1111111223344555666667
Q ss_pred HHHHHHhhCCCC-cceeeccchHHHHHHHHHHhhh--h----------cC-C---CC-EEEEcCCCChhHHHHHHHhhcC
Q 001990 217 QTMIADLTGLPM-SNASLLDEGTAAAEAMAMCNNI--Q----------KG-K---KK-TFIIASNCHPQTIDICITRADG 278 (985)
Q Consensus 217 q~~ia~L~g~~~-~~~sl~~~~ta~~ea~~~a~~~--~----------~~-~---g~-~Vlv~~~~h~s~~~~~~~~a~~ 278 (985)
.+++++++|.+. ..+.+++|||.++..++.+.+. . .+ + ++ +|+++...|+++...++.. +
T Consensus 146 ~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~--g 223 (497)
T 2qma_A 146 VNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWM--G 223 (497)
T ss_dssp HHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHT--T
T ss_pred HHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHc--C
Confidence 889999999975 6788889999888877665321 0 11 0 35 8999999999999988653 2
Q ss_pred CCe-EEEEeCc--------hhhhc-cCCC------EeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCC
Q 001990 279 FDI-KVVVSDL--------KDIDY-KSGD------VCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL 341 (985)
Q Consensus 279 ~gi-~v~~~~~--------~~l~~-l~~~------t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l 341 (985)
.|. +++.++. ++|++ ++++ +.+|+++++ |.+|.+.|+++|+++|+++|++++||+ .++.+..
T Consensus 224 ~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~-a~~~~~~ 302 (497)
T 2qma_A 224 LGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDG-AYGGALI 302 (497)
T ss_dssp SCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEE-TTGGGGG
T ss_pred CCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEeh-hhhHHHH
Confidence 344 5666643 45555 4332 447888887 679999999999999999999999953 2333322
Q ss_pred CCC-----Ccc-cceEEEecC-ccccccCCCCCCceEEEEEchh-hHhcCCCc--eeeeeecCCCCcce-EEeccccccc
Q 001990 342 KPP-----GEL-GADIVVGSA-QRFGVPMGYGGPHAAFLATSQE-YKRMMPGR--IVGVSIDSSGKPAL-RVAMQTREQH 410 (985)
Q Consensus 342 ~~p-----~~~-GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~-~~~~lp~~--~vG~s~d~~g~~~~-~l~l~tre~~ 410 (985)
..+ ..+ ++|+++.++ |++++|. ++|+++++++ .++.+... .+. ......+.+ .+.+ +.
T Consensus 303 ~~~~~~~~~gi~~~D~i~~s~hK~l~~p~-----~~G~l~~~~~~~~~~~~~~~~yl~--~~~~~~~~~~~~~~----~~ 371 (497)
T 2qma_A 303 LSSHKSRLKGVERAHSISVDFHKLFYQTI-----SCGALLVNDKSNFKFLLHHADYLN--REHDELPNLVDKSI----AT 371 (497)
T ss_dssp GSTTGGGGTTGGGCSEEEEETTTTTCCCS-----SCEEEEESCGGGGGGGCC--------------------------CC
T ss_pred hCcchHhhcCcccCCEEEEcchhccCCCc-----ceEEEEEeCHHHHHHhcCCchhcC--CccccCCCccccCC----CC
Confidence 211 123 789999998 7776653 4678888754 33333110 000 000000000 0000 01
Q ss_pred ccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecCC------
Q 001990 411 IRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD------ 484 (985)
Q Consensus 411 ~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~------ 484 (985)
-||. .++ ++.++ +..+|.+|++++.++..++++++++.|+++.+++++.++....+.|....
T Consensus 372 ~r~~---------~al-~~~~~--l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~v~f~~~~~~~~~~ 439 (497)
T 2qma_A 372 TKRF---------DAL-KVFMT--MQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRATHETADLD 439 (497)
T ss_dssp SCCC---------THH-HHHHH--HHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCCSSSEEEEEECCSSSCHH
T ss_pred CCch---------hHH-HHHHH--HHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCCCceEEEEEEcCCccCHH
Confidence 1111 111 22233 36789999999999999999999999999844998765555566666532
Q ss_pred --HHHHHHHHHHcCceeee---ec-CCeEEEEe-ccCCCHHHHHHHHHHHhC
Q 001990 485 --AHAIASAAYKIEMNLRV---VD-SNTVTASF-DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 --~~~l~~~L~~~Gi~~~~---~~-~~~lris~-~~~~t~edid~ll~~l~~ 529 (985)
..++.++|.++|+.+.. .. .+.+|+++ +.++|++|+++++++|..
T Consensus 440 ~l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~~l~~ 491 (497)
T 2qma_A 440 ELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLSKINM 491 (497)
T ss_dssp HHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 24677888888997642 12 35799998 889999999999999974
No 122
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.81 E-value=5.8e-18 Score=195.88 Aligned_cols=296 Identities=18% Similarity=0.129 Sum_probs=195.8
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--hh
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--KD 290 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~--~~ 290 (985)
..++++.+++++|.+ ++.++++||.+++.++.++ +. +||+|+++...|+++...+...++..|++++.++. ++
T Consensus 58 ~~~l~~~la~~~g~~--~~~~~~~gt~a~~~al~~l-~~--~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 132 (412)
T 2cb1_A 58 AKALEERLKALEGAL--EAVVLASGQAATFAALLAL-LR--PGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPEPEA 132 (412)
T ss_dssp HHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTT-CC--TTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSSHHH
T ss_pred HHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHH-hC--CCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCHHH
Confidence 556788999999987 4778899998888777654 23 78999999999999999887666778999999875 67
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEecccccc-CCCCCCcccceEEEecC-ccccccCCCC
Q 001990 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALT-ILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg-~l~~p~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
+++ ++++|++|++++| |.+|.+.|+++|+++||++|+++++| +.++.+ ....+..+|+|++++|. |.+++| |
T Consensus 133 l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D-~~~~~~~~~~~~~~~~~di~~~S~~K~~~~~---~ 208 (412)
T 2cb1_A 133 VREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVD-NTFGAAGALCRPLAWGAHVVVESLTKWASGH---G 208 (412)
T ss_dssp HHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEE-CGGGTTTTSCCGGGGTCSEEEEETTTTTTCS---S
T ss_pred HHHHhccCCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEE-CCCccccccCCccccCCeEEEECCcccccCC---C
Confidence 777 8889999999988 68999999999999999999999995 344444 33455678999999998 877654 2
Q ss_pred CCceEEEEEchhhH-----hcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcc
Q 001990 367 GPHAAFLATSQEYK-----RMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE 441 (985)
Q Consensus 367 GP~~G~l~~~~~~~-----~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~ 441 (985)
++-.|+++.++++. ..-++...|.... ..| ..+.-.+..| .++.|..+. .+.+..+ ++.+.+.+
T Consensus 209 ~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~--~~~~~~~~~r--~~~~~~~g~-~~~~~~a--~~~~~~l~ 277 (412)
T 2cb1_A 209 SVLGGAVLSRETELWRNYPQFLQPDLKGQIPW----EAL--RARCFPERVR--TLGLSLCGM-ALSPFNA--YLLFQGLE 277 (412)
T ss_dssp CCCCEEEEECCCSGGGGSGGGGCC-------H----HHH--GGGHHHHHHH--HHHTTTTCC-CCCHHHH--HHHHHHGG
T ss_pred CcEEEEEEeccccccccccccccccccccchh----hcc--chHHHHHHHH--HHHHHhcCC-CCChHHh--HHHHcCCc
Confidence 22234444443321 0111111121000 000 0000001111 122121111 0011111 12333345
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCEEEc--CC---------------CCcceEEEecCCHHHHHHHHHHcCceeeee--
Q 001990 442 GLKTIAQRVHGLAGTFALGLKKLGTVEVQ--GL---------------PFFDTVKVKCADAHAIASAAYKIEMNLRVV-- 502 (985)
Q Consensus 442 Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~--~~---------------~~~~~~~i~~~~~~~l~~~L~~~Gi~~~~~-- 502 (985)
.+++..++..++++++.+.|.+..++.++ .. .....+.|.+.+.+++.+.|.+.||.+ ..
T Consensus 278 ~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~~~~~~~~~~l~~~~i~~-~~s~ 356 (412)
T 2cb1_A 278 TVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDLGDLERASRFLGAIRLLK-AANL 356 (412)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEECSSHHHHHHHHHHCSSEE-CSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEeCCHHHHHHHHHhCCeee-eccc
Confidence 56666777788999999999987447643 11 112356777723778888888889875 21
Q ss_pred ----------------------------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 503 ----------------------------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ----------------------------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.++.+|+|++.++++++|++|+++|..
T Consensus 357 g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 357 GDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp SCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred CCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 157899999999999999999999963
No 123
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.81 E-value=1.9e-18 Score=198.45 Aligned_cols=300 Identities=13% Similarity=0.156 Sum_probs=195.6
Q ss_pred hcHHHHHHHHHHHHHHHhCC--Cccc-eecChHHHHHHHHHHHHHHHHHhcCCCCC-CEEEEcCCCCCCcHHHHHhcCcE
Q 001990 628 QGYQEMFNNLGEWLCTITGF--DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHR-NVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~--~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~-~~Vlv~~~~Hg~~~~~~~~~G~~ 703 (985)
.|..++.+++.+++.+.+|. +... +++++|++++..++.++. .++ ++|+++.+.|..+...++..|++
T Consensus 76 ~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~--------~~g~d~vl~~~p~~~~~~~~~~~~g~~ 147 (398)
T 3ele_A 76 QGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALT--------SDAYDEFITIAPYFPEYKVFVNAAGAR 147 (398)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC--------CSTTCEEEEESSCCTHHHHHHHHTTCE
T ss_pred CCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHc--------CCCCCEEEEeCCCchhhHHHHHHcCCE
Confidence 46667777788888888884 4444 455666666544433321 366 89999998887777778889999
Q ss_pred EEEEeCCCC-CCCCHHHHHHHHHhcCCCeEEEEEEcC-CCcccccc--CHHHHHHHHHH------cCCEEEEEccccccc
Q 001990 704 IVSVGTDAK-GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHD------NGGQVYMDGANMNAQ 773 (985)
Q Consensus 704 v~~v~~~~~-g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~--di~eI~~la~~------~g~lliVD~a~~~~~ 773 (985)
++.+|.+++ +.+|+++|+++++ +++++|++++| |++|.+.+ ++++|+++|++ +|+++++|++|....
T Consensus 148 ~~~v~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~ 224 (398)
T 3ele_A 148 LVEVPADTEHFQIDFDALEERIN---AHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIV 224 (398)
T ss_dssp EEEECCCTTTSSCCHHHHHHTCC---TTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCB
T ss_pred EEEEecCCcCCcCCHHHHHHHhC---cCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccc
Confidence 999999754 5899999999997 78999999999 57999861 38888899999 999999999985321
Q ss_pred -cC--CCC-CCcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcC--CCCccccCCCCCCCCCCCCCCCcccccc
Q 001990 774 -VG--LTS-PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFL--PSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 774 -~g--~~~-~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~l--pg~~~g~~~~~~~~~~~~~t~~i~s~~~ 847 (985)
.+ +.. ....+.++++.|+||+|+. .|.++|++++++++.... ....... ....+..+.
T Consensus 225 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~--- 288 (398)
T 3ele_A 225 YDGIKVPFVTKYYDNTLVCYSYSKSLSL----PGERIGYVLVPDEVYDKAELYAAVCGA---------GRALGYVCA--- 288 (398)
T ss_dssp CTTCCCCCGGGTCSSEEEEEESTTTSSC----TTTCCEEEECCTTSTTHHHHHHHHHHH---------HHHTTCCCS---
T ss_pred cCCCCcCChHhhcCCeEEEEehhhcCCC----ccceeEEEEEcchhhhHHHHHHHHHHH---------hhhccccCC---
Confidence 11 111 1234566888999999853 467899999987754311 0000000 000001111
Q ss_pred hhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHH
Q 001990 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 848 g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~ 926 (985)
+..... +....+.... ..++..++++++.+.|++ ++.+. .+.+..+ +.++++ +.+..++.+.
T Consensus 289 -~~~~~~---a~~~~l~~~~---~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~--~~~~~~------~~~~~~~~~~ 351 (398)
T 3ele_A 289 -PSLFQK---MIVKCQGATG---DINAYKENRDLLYEGLTRIGYHCF--KPDGAFY--MFVKAL------EDDSNAFCEK 351 (398)
T ss_dssp -CHHHHH---HHTTCTTCCC---CHHHHHHHHHHHHHHHHHHTCCEE--CCSBSSE--EEEECS------SSCHHHHHHH
T ss_pred -CHHHHH---HHHHHhcCHH---HHHHHHHHHHHHHHHHHHcCCeec--CCCeeEE--EEEEcC------CCCHHHHHHH
Confidence 111111 1111222211 234556777888888887 55543 2222221 334543 3468899999
Q ss_pred HHHCCCccCCCC-CCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHH
Q 001990 927 LMDYGFHGPTMS-WPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 927 L~e~Gi~~~~~~-~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
|.++||.+.... +..++.+|++++ ++++||+ ++++.|++++++++
T Consensus 352 l~~~gi~v~~g~~~~~~~~iRis~~--~~~e~i~---~~l~~l~~~l~~~~ 397 (398)
T 3ele_A 352 AKEEDVLIVAADGFGCPGWVRISYC--VDREMIK---HSMPAFEKIYKKYN 397 (398)
T ss_dssp HHTTTEECEESGGGTCTTEEEEECC--SCHHHHH---HHHHHHHHHHHHHC
T ss_pred HHHCCEEEeCccccCCCCeEEEEec--CCHHHHH---HHHHHHHHHHHHhh
Confidence 999999874322 223589999986 7999999 99999999887653
No 124
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.81 E-value=8.6e-19 Score=202.37 Aligned_cols=299 Identities=15% Similarity=0.120 Sum_probs=197.1
Q ss_pred hcHHHHHHHHHHHHHHHhCCC--cc-ceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEE
Q 001990 628 QGYQEMFNNLGEWLCTITGFD--SF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~~--~~-~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v 704 (985)
+|..++.+.+.+++.+.+|.+ .. .+++++|++++..++.++. .++++|+++...|..+...++..|+++
T Consensus 79 ~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~ 150 (409)
T 2gb3_A 79 AGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIA--------NPGDEILVLEPFYANYNAFAKIAGVKL 150 (409)
T ss_dssp TCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTHHHHHHHHHTCEE
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHcCCEE
Confidence 454555555555665555533 33 3556677766644444321 367899999888877777778899999
Q ss_pred EEEeCCC--CCCCCHHHHHHHHHhcCCCeEEEEEEcCC-Cccccc--cCHHHHHHHHHHcCCEEEEEcccccccc-C-CC
Q 001990 705 VSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQV-G-LT 777 (985)
Q Consensus 705 ~~v~~~~--~g~iDle~L~~~i~~~~~~t~~Vvi~~pn-~~G~i~--~di~eI~~la~~~g~lliVD~a~~~~~~-g-~~ 777 (985)
+.+|.++ +..+ +++|+++++ +++++|++++|+ ++|.+. .++++|+++|+++|+++++|++|..... + ..
T Consensus 151 ~~v~~~~~~~~~~-~~~l~~~l~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~ 226 (409)
T 2gb3_A 151 IPVTRRMEEGFAI-PQNLESFIN---ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFA 226 (409)
T ss_dssp EEEECCGGGTSCC-CTTGGGGCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCC
T ss_pred EEeccCCCCCCcc-HHHHHHhhC---cCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCC
Confidence 9999875 2344 888988886 689999999985 689874 2599999999999999999999853221 1 01
Q ss_pred C--CCcCCCcEEEeCCcccccccCCCCCCcceeeeecc-cccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHH
Q 001990 778 S--PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 778 ~--~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~-~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~ 854 (985)
. .+..+.|+++.|+||+|+. .|.++|++++++ ++.+.+..... ..+ +.+ .....
T Consensus 227 ~~~~~~~~~~i~~~s~sK~~g~----~G~r~G~~~~~~~~l~~~l~~~~~------------~~~---~~~----~~~~~ 283 (409)
T 2gb3_A 227 SALSIESDKVVVIDSVSKKFSA----CGARVGCLITRNEELISHAMKLAQ------------GRL---APP----LLEQI 283 (409)
T ss_dssp CGGGSCCTTEEEEEESTTTTTC----GGGCCEEEECSCHHHHHHHHHHHH------------HSC---CCC----HHHHH
T ss_pred CccccCCCCEEEEecchhccCC----ccceEEEEEECcHHHHHHHHHHHh------------ccC---CCC----HHHHH
Confidence 1 1113579999999999853 345689999988 77654421100 011 111 11122
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHC---
Q 001990 855 ISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY--- 930 (985)
Q Consensus 855 ~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~--- 930 (985)
++.+++.. +.+.+.+..++..++++++.+.|++ ++.+. ..+.+..+ +.++++ +.+..++.+.|.++
T Consensus 284 a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~~~~~~--~~~~~~------~~~~~~l~~~l~~~~~~ 353 (409)
T 2gb3_A 284 GSVGLLNL-DDSFFDFVRETYRERVETVLKKLEEHGLKRF-TKPSGAFY--ITAELP------VEDAEEFARWMLTDFNM 353 (409)
T ss_dssp HHHHHHTC-CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCB-CCCSBSSE--EEEECS------SSCHHHHHHHHHHSCCB
T ss_pred HHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHcCceee-eCCCeeEE--EEEEeC------CCCHHHHHHHHHhcccc
Confidence 22333322 4556667777778888999999987 44441 12222221 234543 35678999999987
Q ss_pred ---CCccCCC-CCC-----CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHH
Q 001990 931 ---GFHGPTM-SWP-----VPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 931 ---Gi~~~~~-~~p-----v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
||.+... .+. .++.+|++++ ++++|++ ++++.|++++++++
T Consensus 354 ~~~gi~v~~g~~f~~~~~~~~~~iRis~~--~~~e~i~---~~~~~l~~~l~~~~ 403 (409)
T 2gb3_A 354 DGETTMVAPLRGFYLTPGLGKKEIRIACV--LEKDLLS---RAIDVLMEGLKMFC 403 (409)
T ss_dssp TTEEEECEEGGGGCSSTTTTSSEEEEECC--SCHHHHH---HHHHHHHHHHHHHH
T ss_pred ccCcEEEeCchHhCCCCCCCCCEEEEEeC--CCHHHHH---HHHHHHHHHHHHhh
Confidence 9987432 121 1478999988 8999999 99999999988764
No 125
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.81 E-value=1.1e-18 Score=202.34 Aligned_cols=299 Identities=14% Similarity=0.135 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHHHhC--CCccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEE
Q 001990 631 QEMFNNLGEWLCTITG--FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSV 707 (985)
Q Consensus 631 ~~~~~el~~~la~l~G--~~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v 707 (985)
.++.+++++++++.+| .+... ++.++|++++++++.++. .++++||++.+.|..+...+...|.+++.+
T Consensus 99 ~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~--------~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~ 170 (421)
T 3l8a_A 99 DDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFS--------EKGDAVLINSPVYYPFARTIRLNDHRLVEN 170 (421)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS--------CTEEEEEEEESCCHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhc--------CCCCEEEECCCCcHHHHHHHHHCCCEEEec
Confidence 3567788899999998 44443 556666666655544332 356889998876666666677899999999
Q ss_pred eCC-CCC--CCCHHHHHHHHHhcCCCeEEEEEEcC-CCcccc---ccCHHHHHHHHHHcCCEEEEEccccccc-cCC--C
Q 001990 708 GTD-AKG--NINIEELRKAAEANRDNLSTLMVTYP-STHGVY---EEGIDEICKIIHDNGGQVYMDGANMNAQ-VGL--T 777 (985)
Q Consensus 708 ~~~-~~g--~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i---~~di~eI~~la~~~g~lliVD~a~~~~~-~g~--~ 777 (985)
|++ .++ .+|+++|++++++ +++++|++++| |++|.+ + ++++|+++|+++|+++|+|++|.... .+. .
T Consensus 171 ~~~~~~~~~~~d~~~le~~i~~--~~~~~vil~~p~nptG~~~~~~-~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~ 247 (421)
T 3l8a_A 171 SLQIINGRFEIDFEQLEKDIID--NNVKIYLLCSPHNPGGRVWDND-DLIKIAELCKKHGVILVSDEIHQDLALFGNTHH 247 (421)
T ss_dssp ECEEETTEEECCHHHHHHHHHH--TTEEEEEEESSBTTTTBCCCHH-HHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCC
T ss_pred cccccCCCeeeCHHHHHHHhhc--cCCeEEEECCCCCCCCCcCCHH-HHHHHHHHHHHcCCEEEEEccccccccCCCCCc
Confidence 985 333 6899999999973 58999999999 579988 4 69999999999999999999984211 110 0
Q ss_pred C-----CCcCCCcEEEeCCcccccccCCCCCCcceeeeec-ccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhh
Q 001990 778 S-----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 778 ~-----~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~-~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~ 851 (985)
. +...+.++.+.+++|+|+. +|.++|+++++ +++.+.+...... ..+.+ . +..
T Consensus 248 ~~~~~~~~~~~~~i~~~s~sK~~g~----~G~~~G~~~~~~~~l~~~~~~~~~~-----------~~~~~--~----n~~ 306 (421)
T 3l8a_A 248 SLNTLDASYKDFTIILSSATKTFNI----AGTKNSFAIIQNESLRRKFQYRQLA-----------NNQHE--V----PTV 306 (421)
T ss_dssp CGGGSCTTGGGTEEEEECSHHHHTC----GGGCCEEEECCSHHHHHHHHHHHHH-----------TTCSC--C----CHH
T ss_pred cHHHcCchhcCcEEEEEeChhhccC----chhheEeEEcCCHHHHHHHHHHHHh-----------cccCC--C----CHH
Confidence 1 1112445888999999953 45678999988 6665543211000 00101 1 222
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHH-C
Q 001990 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD-Y 930 (985)
Q Consensus 852 ~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e-~ 930 (985)
.+.++.+.+.. +.+.+.+..++..++.+++.+.|++...+....+.+... ..++++. .+.+..++.+.|.+ +
T Consensus 307 ~~~a~~aal~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~~~~~--~~v~~~~----~~~~~~~l~~~l~~~~ 379 (421)
T 3l8a_A 307 GMIATQAAFQY-GKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPEGTYL--VWLDFSA----YAIAQPQLSEKLQNEA 379 (421)
T ss_dssp HHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECCSBSSE--EEEECGG----GTCCTTHHHHHHHHTT
T ss_pred HHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCCCeeEE--EEEeccc----cCCCHHHHHHHHHHhC
Confidence 23333344442 445566777777888899999997632222222222221 2356541 13567789999975 5
Q ss_pred CCccCCCC-C--CCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHH
Q 001990 931 GFHGPTMS-W--PVPGTLMIEPTESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 931 Gi~~~~~~-~--pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
||.+.... + ...+.+|++++ +++++|+ ++++.|+++++
T Consensus 380 gi~v~~g~~f~~~~~~~iRi~~~--~~~~~i~---~~l~~l~~~l~ 420 (421)
T 3l8a_A 380 KVVLNDGAHFGKEGKYFARLNVA--TPKNTVQ---EALSRIISVFG 420 (421)
T ss_dssp CEECEEGGGGCGGGTTEEEEECC--SCHHHHH---HHHHHHHHHC-
T ss_pred CEEEECchhhCCCCCCEEEEEec--CCHHHHH---HHHHHHHHHHh
Confidence 99874321 1 12588999988 6899999 99999987654
No 126
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.81 E-value=1.5e-18 Score=201.60 Aligned_cols=301 Identities=11% Similarity=0.086 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHhC-----CCccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEE
Q 001990 634 FNNLGEWLCTITG-----FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSV 707 (985)
Q Consensus 634 ~~el~~~la~l~G-----~~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v 707 (985)
..++++.++++++ .+... +++++|++++..++.++. .++++|+++.+.|..+...++..|++++.+
T Consensus 98 ~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~ 169 (427)
T 3dyd_A 98 FLSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLA--------NPGQNILVPRPGFSLYKTLAESMGIEVKLY 169 (427)
T ss_dssp CHHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCTHHHHHHHHTTCEEEEE
T ss_pred cHHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhc--------CCCCEEEEcCCCchhHHHHHHHcCCEEEEE
Confidence 3467888888888 44433 566667766644443331 367899999887777767788899999999
Q ss_pred eCCC--CCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccc-cC--CCC
Q 001990 708 GTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQ-VG--LTS 778 (985)
Q Consensus 708 ~~~~--~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~d---i~eI~~la~~~g~lliVD~a~~~~~-~g--~~~ 778 (985)
+.++ ++.+|+++|+++++ +++++|++++| |++|.+. + +++|+++|+++|+++++|+++.... .+ +..
T Consensus 170 ~~~~~~~~~~d~~~l~~~l~---~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~ 245 (427)
T 3dyd_A 170 NLLPEKSWEIDLKQLEYLID---EKTACLIVNNPSNPCGSVF-SKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEP 245 (427)
T ss_dssp EEEGGGTTEECHHHHHSSCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCC
T ss_pred ecccccCCCCCHHHHHHHhc---cCCCEEEEECCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCcc
Confidence 9864 46789999999987 67999999999 5799987 6 9999999999999999999985211 11 111
Q ss_pred CCcCCCc---EEEeCCcccccccCCCCCCcceeeeeccc-------ccCcCCCCccccCCCCCCCCCCCCCCCcccccch
Q 001990 779 PGYIGAD---VCHLNLHKTFCIPHGGGGPGMGPIGVKKH-------LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 779 ~g~~g~D---i~~~s~hKtl~~p~g~GGPg~G~l~~~~~-------l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g 848 (985)
...++.| +++.|+||.|+. .|.++|++++++. +...+... . ..+ ...
T Consensus 246 ~~~~~~~~~vi~~~S~sK~~~~----~G~riG~~~~~~~~~~~~~~i~~~l~~~--~-----------~~~--~~~---- 302 (427)
T 3dyd_A 246 LATLSTDVPILSCGGLAKRWLV----PGWRLGWILIHDRRDIFGNEIRDGLVKL--S-----------QRI--LGP---- 302 (427)
T ss_dssp GGGGCSSCCEEEEEESTTTSSC----GGGCCEEEEEECSTTSSHHHHHHHHHHH--H-----------HHH--CCS----
T ss_pred HHHhCCCCcEEEEeeccccCCC----cCcceEEEEecCcchhhHHHHHHHHHHH--H-----------hcc--CCC----
Confidence 1223333 567799998753 4677999998742 22221100 0 000 011
Q ss_pred hhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHH
Q 001990 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 849 ~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~ 928 (985)
+.....++.+++.....+.+.+..++..++++++.+.|++...+....+.+..+ +.+.++.-....+.+..+++++|.
T Consensus 303 ~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~g~~--~~~~l~~~~~~~~~~~~~~~~~l~ 380 (427)
T 3dyd_A 303 CTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMY--LMVGIEMEHFPEFENDVEFTERLV 380 (427)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSBTTE--EEEEECGGGCTTCSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEE--EEEecCHhhcCCCCCHHHHHHHHH
Confidence 112223334455544456677777788888999999998732333222222222 223432100011346778888885
Q ss_pred -HCCCccCCC-CCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHH
Q 001990 929 -DYGFHGPTM-SWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 929 -e~Gi~~~~~-~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
++||.+... .+..++.+|++++ +++++|+ ++++.|++++++.+
T Consensus 381 ~~~gV~v~~g~~~~~~~~iRis~~--~~~e~i~---~~l~~l~~~l~~~~ 425 (427)
T 3dyd_A 381 AEQSVHCLPATCFEYPNFIRVVIT--VPEVMML---EACSRIQEFCEQHY 425 (427)
T ss_dssp HHHCEECEEGGGGTCTTEEEEESC--SCHHHHH---HHHHHHHHHHHHHC
T ss_pred HHCCEEEECCcccCCCCeEEEEEC--CCHHHHH---HHHHHHHHHHHHhh
Confidence 789987432 2223589999986 7899999 99999999887654
No 127
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.81 E-value=2.1e-18 Score=196.96 Aligned_cols=320 Identities=13% Similarity=0.114 Sum_probs=216.1
Q ss_pred CCCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHHHHHHHHHhhCCCCc-ceeeccchHHHHHHHHHHhhhhcCCC
Q 001990 177 NTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMS-NASLLDEGTAAAEAMAMCNNIQKGKK 255 (985)
Q Consensus 177 ~~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g~~~~-~~sl~~~~ta~~ea~~~a~~~~~~~g 255 (985)
|..+|+.+.+++.+.. .. .+.+.. .+...++++.+++++|.+.. ++.+++|||.++++++.++ +. +|
T Consensus 31 p~~~~~~v~~a~~~~~--~~---~~~~~~----~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~-~~--~g 98 (393)
T 3kgw_A 31 PSNLAPRVLAAGSLRM--IG---HMQKEM----LQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNL-LE--PG 98 (393)
T ss_dssp CCCCCHHHHHHTTCCC--CC---TTSHHH----HHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHH-CC--TT
T ss_pred CCCCCHHHHHHhcccc--cC---cccHHH----HHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhc-CC--CC
Confidence 5567888765544321 11 122222 34566788999999999765 4778899998888877665 33 88
Q ss_pred CEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHh
Q 001990 256 KTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHA 324 (985)
Q Consensus 256 ~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~--------~~l~~-l~~-~t~~V~v~~p-n~~G~i~dl~~I~~~a~~ 324 (985)
|+|+++...|.+.. +...++..|.+++.++. +++++ +++ ++++|++.+| |.+|.+.|+++|.++|++
T Consensus 99 d~vl~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~ 176 (393)
T 3kgw_A 99 DSFLTGTNGIWGMR--AAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCHR 176 (393)
T ss_dssp CEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHH
T ss_pred CEEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHHHHHHHHH
Confidence 99999977664321 12223456888877653 45655 655 8999999988 789999999999999999
Q ss_pred CCcEEEEEeccccccCCC-CCCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEE
Q 001990 325 NGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRV 402 (985)
Q Consensus 325 ~galliV~a~~~alg~l~-~p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l 402 (985)
+|+++++| +..+.|... ....+|+|+++.+. |+|++ ++++|++++++++++.+.....++ ..|.+
T Consensus 177 ~~~~li~D-e~~~~g~~~~~~~~~~~d~~~~s~sK~~~~-----~~g~g~~~~~~~~~~~~~~~~~~~-------~~~~~ 243 (393)
T 3kgw_A 177 YQCLLLVD-SVASLGGVPIYMDQQGIDIMYSSSQKVLNA-----PPGISLISFNDKAKYKVYSRKTKP-------VSFYT 243 (393)
T ss_dssp TTCEEEEE-CTTTTTTSCCCTTTTTCCEEEEESSSTTCC-----CSSCEEEEECHHHHHHHHTCSSCC-------SCSTT
T ss_pred cCCEEEEE-CCccccCcccchhhcCCCEEEecCcccccC-----CCceeEEEECHHHHHHHhccCCCC-------Cceee
Confidence 99999995 344555432 34568999999998 76753 356899999998877763221111 11211
Q ss_pred ecccc------cccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcC-C--C
Q 001990 403 AMQTR------EQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG-L--P 473 (985)
Q Consensus 403 ~l~tr------e~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~--~ 473 (985)
++... .+..+...+|.|+ ....++.+++ .++..+|++++.++..++.+++++.|+++| +++.. . .
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~ 317 (393)
T 3kgw_A 244 DITYLAKLWGCEGETRVIHHTTPV---TSLYCLRESL--ALIAEQGLENCWRRHREATAHLHKHLQEMG-LKFFVKDPEI 317 (393)
T ss_dssp CHHHHHHHTTCSSSCCCCCCCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBSSSSGGG
T ss_pred cHHHHHHhhhhccccCCCCCCCCH---HHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHcC-CeeccCChhh
Confidence 11000 0111233445554 3444444444 455566899999999999999999999986 87763 2 1
Q ss_pred Cc-ceEEEecC-C--HHHHHHHHHHc-Cceeeee----cCCeEEEEe-ccCCCHHHHHHHHHHHhC
Q 001990 474 FF-DTVKVKCA-D--AHAIASAAYKI-EMNLRVV----DSNTVTASF-DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 474 ~~-~~~~i~~~-~--~~~l~~~L~~~-Gi~~~~~----~~~~lris~-~~~~t~edid~ll~~l~~ 529 (985)
.. ..+.+..+ + ..++.++|.++ ||.++.. .++.+|+++ ...+|++|+++++++|..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~ 383 (393)
T 3kgw_A 318 RLPTITTVTVPAGYNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALRE 383 (393)
T ss_dssp BCSSEEEEECCTTBCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHH
Confidence 11 22345654 2 78999999887 9988642 357899998 555699999999999974
No 128
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.81 E-value=7.7e-19 Score=202.82 Aligned_cols=297 Identities=17% Similarity=0.157 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcH---HHHHh--cCcEEEEE
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP---ATAAM--CGMKIVSV 707 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~---~~~~~--~G~~v~~v 707 (985)
....+++++++++|.+...+.+++|++++++++.++. .++++|+++...|+.+. ..... .+++++.+
T Consensus 77 ~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~~--------~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 148 (420)
T 3gbx_A 77 VEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALL--------QPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPY 148 (420)
T ss_dssp HHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------CTTCEEEEEEEC------------CHHHHSEEEEE
T ss_pred HHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHhc--------CCCCEEEecchhhcceeccchhhhhcccceeEEec
Confidence 3445668999999998877767888876655444331 47789999888887643 11122 34566677
Q ss_pred eCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEcccccccc--CCCCCCcCCCc
Q 001990 708 GTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV--GLTSPGYIGAD 785 (985)
Q Consensus 708 ~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~pn~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~--g~~~~g~~g~D 785 (985)
+.+.++.+|+++|++++++ .++++|++++||+ |... |+++|+++|++||+++|+|++|..+.. +........+|
T Consensus 149 ~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~-~~~~-~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~d 224 (420)
T 3gbx_A 149 GIDESGKIDYDEMAKLAKE--HKPKMIIGGFSAY-SGVV-DWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAH 224 (420)
T ss_dssp EECTTCSCCHHHHHHHHHH--HCCSEEEECCTTC-CSCC-CHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTTTSS
T ss_pred cCCccCCcCHHHHHHHHHh--cCCeEEEEecCcc-CCcc-CHHHHHHHHHHcCCEEEEECCcchhceecccCCcccccCC
Confidence 7777789999999999983 2578888888875 4555 799999999999999999999854432 11011112489
Q ss_pred EEEeCCcccccccCCCCCCcceeeeecc---cccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHH
Q 001990 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKK---HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 786 i~~~s~hKtl~~p~g~GGPg~G~l~~~~---~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~ 862 (985)
++++|+||+|+ ||.+|++++++ ++.+.+......+ ..++++ ... +.++.+.+..
T Consensus 225 i~~~s~sK~~~------g~~gg~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-------~~~-~~a~~~a~~~ 281 (420)
T 3gbx_A 225 VVTTTTHKTLA------GPRGGLILAKGGDEELYKKLNSAVFPS---------AQGGPL-------MHV-IAGKAVALKE 281 (420)
T ss_dssp EEEEESSGGGC------SCSCEEEEESSCCHHHHHHHHHHHC-------------CCCC-------HHH-HHHHHHHHHH
T ss_pred EEEeecccCCC------CCCceEEEEcCCcHHHHHHhhhhcCCC---------CCCCcc-------hhH-HHHHHHHHHH
Confidence 99999999983 56568998887 5544332111000 000011 111 1122223333
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC---
Q 001990 863 MGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS--- 938 (985)
Q Consensus 863 lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~--- 938 (985)
...+++.+..++..++++++.+.|++ ++.+...+.. .+.+.+++.. .+.+...+.+.|.++||.+....
T Consensus 282 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~---~~~~~~~~~~----~~~~~~~~~~~l~~~gi~v~~~~~~~ 354 (420)
T 3gbx_A 282 AMEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGGTE---NHLFLLDLVD----KNLTGKEADAALGRANITVNKNSVPN 354 (420)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCS---SSEEEEECGG----GTCCHHHHHHHHHHTTEECEEECCTT
T ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHhcCCeeccCCCC---CeEEEEEcCC----CCCCHHHHHHHHHHCCcEeccccCCC
Confidence 43456777778888999999999987 5544321111 2234455531 24578889999999999875411
Q ss_pred ---CC-CCCEEEEeccCC----CCHHhhchHHHHHHHHHHHHHH
Q 001990 939 ---WP-VPGTLMIEPTES----ESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 939 ---~p-v~~~lris~t~~----~t~eeId~~~~~i~aL~~i~~~ 974 (985)
.| .++.+|++++.. .+++|++ +++++|++++++
T Consensus 355 ~~~~~~~~~~iRi~~~~~~~~~~~~~~i~---~~~~~l~~~l~~ 395 (420)
T 3gbx_A 355 DPKSPFVTSGIRIGSPAVTRRGFKEAEVK---ELAGWMCDVLDN 395 (420)
T ss_dssp CSSCTTTCSEEEEECHHHHHTTCCHHHHH---HHHHHHHHHHHT
T ss_pred CccccCCCcceEEecchhcccCCCHHHHH---HHHHHHHHHHhC
Confidence 11 235699998754 4589999 999999887653
No 129
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.80 E-value=5.4e-19 Score=199.34 Aligned_cols=293 Identities=13% Similarity=0.069 Sum_probs=194.8
Q ss_pred cHHHHHHHHHHHHHHHhCCCcc-ceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHH--HHHhcCcEEE
Q 001990 629 GYQEMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA--TAAMCGMKIV 705 (985)
Q Consensus 629 G~~~~~~el~~~la~l~G~~~~-~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~--~~~~~G~~v~ 705 (985)
|..+...++++++++++|.+.. .+++++|++++..++.+++ .++++|+++...|..+.. .++..|++++
T Consensus 46 g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~ 117 (359)
T 1svv_A 46 GQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL--------RPWEAVIATQLGHISTHETGAIEATGHKVV 117 (359)
T ss_dssp TCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHC--------CTTEEEEEETTSHHHHSSTTHHHHTTCCEE
T ss_pred cccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHh--------CCCCEEEEcccchHHHHHHHHHhcCCCeeE
Confidence 3345678899999999998764 3566777777655544432 367899999887765544 3677899999
Q ss_pred EEeCCCCCCCCHHHHHHHHHhc----CCCeEEEEEEcCCCccccccC---HHHHHHHHHHcCCEEEEEccc---cccccC
Q 001990 706 SVGTDAKGNINIEELRKAAEAN----RDNLSTLMVTYPSTHGVYEEG---IDEICKIIHDNGGQVYMDGAN---MNAQVG 775 (985)
Q Consensus 706 ~v~~~~~g~iDle~L~~~i~~~----~~~t~~Vvi~~pn~~G~i~~d---i~eI~~la~~~g~lliVD~a~---~~~~~g 775 (985)
.+|.+ ++.+|+++|++++++. ++++++|++++||++|.+. | +++|+++|+++|+++|+|++| ..+..+
T Consensus 118 ~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~~ptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~ 195 (359)
T 1svv_A 118 TAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQY-TKQELEDISASCKEHGLYLFLDGARLASALSSPV 195 (359)
T ss_dssp EECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCC-CHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTT
T ss_pred EEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcCCCCceec-CHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCC
Confidence 99986 7889999999999842 1148999999998899987 5 999999999999999999998 322222
Q ss_pred CCCCCc----CCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhh
Q 001990 776 LTSPGY----IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 776 ~~~~g~----~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~ 851 (985)
. .... .+.|++++++||+. +..+.|++++++++.+.+....... + .+.+ .+...
T Consensus 196 ~-~~~~~~~~~~~d~~~~s~~K~g------~~~~~g~l~~~~~~~~~~~~~~~~~-----------~--~~~~--~~~~~ 253 (359)
T 1svv_A 196 N-DLTLADIARLTDMFYIGATKAG------GMFGEALIILNDALKPNARHLIKQR-----------G--ALMA--KGWLL 253 (359)
T ss_dssp C-CCCHHHHHHHCSEEEEECTTTT------CSSCEEEEECSGGGCTTHHHHHHHT-----------T--CCCT--TTHHH
T ss_pred c-chhhhhhhhcCCEEEEecccCC------CCCceEEEEEcccHHHHHHHHHhcC-----------C--cccc--cchhh
Confidence 1 1111 36899999999963 2236789999887765442110000 0 0000 00111
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHC
Q 001990 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY 930 (985)
Q Consensus 852 ~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~ 930 (985)
.+ + ....+..+++.+..++..++++++.+.|+. ++.+. ++.+.. .+.+++ + .++.++|.++
T Consensus 254 ~~--~--~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~~~--~~~~~~---------~-~~~~~~l~~~ 315 (359)
T 1svv_A 254 GI--Q--FEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLA--WPSASN--QLFPIL---------E-NTMIAELNND 315 (359)
T ss_dssp HH--H--HHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTTCCBS--SCCSSS--EECBEE---------E-HHHHHHHTTT
T ss_pred HH--H--HHHHHhhhhHHHHHHHHHHHHHHHHHHhccCCeEEc--cCCccc--eEEEEc---------C-HHHHHHHHHh
Confidence 11 1 122345556667777888889999999943 44432 222221 122332 1 4788999988
Q ss_pred -CCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 931 -GFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 931 -Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
||.+.......++.+|++++..+|++|++ +++++|++++++
T Consensus 316 ~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~---~~~~~l~~~~~~ 357 (359)
T 1svv_A 316 FDMYTVEPLKDGTCIMRLCTSWATEEKECH---RFVEVLKRLVAS 357 (359)
T ss_dssp EECEEEEEETTTEEEEEEECCTTCCHHHHH---HHHHHHHHC---
T ss_pred cCEEEEecccCCCceEEEEccCcCCHHHHH---HHHHHHHHHHhc
Confidence 99872110012468999999999999999 999999887654
No 130
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.80 E-value=8.7e-19 Score=200.48 Aligned_cols=297 Identities=9% Similarity=0.064 Sum_probs=195.5
Q ss_pred hcHHHHHHHHHHHHHHHhCCC--cc-c-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcE
Q 001990 628 QGYQEMFNNLGEWLCTITGFD--SF-S-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~~--~~-~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~ 703 (985)
+|..++.+.+.+++.+.+|.+ .. . +++++|++++..++.++. .++++|+++...|..+...++..|++
T Consensus 67 ~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~~ 138 (386)
T 1u08_A 67 TGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALV--------RNGDEVICFDPSYDSYAPAIALSGGI 138 (386)
T ss_dssp TCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhC--------CCCCEEEEeCCCchhHHHHHHHcCCE
Confidence 455566666777777777853 33 3 555666666544433321 36789999988888777778889999
Q ss_pred EEEEeCCC-CCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cCC--
Q 001990 704 IVSVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VGL-- 776 (985)
Q Consensus 704 v~~v~~~~-~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~--di~eI~~la~~~g~lliVD~a~~~~~-~g~-- 776 (985)
++.+|.++ ++.+|+++|+++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++|+|++|.... .+-
T Consensus 139 ~~~v~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~ 215 (386)
T 1u08_A 139 VKRMALQPPHFRVDWQEFAALLS---ERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGH 215 (386)
T ss_dssp EEEEECCTTTCCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCC
T ss_pred EEEeecCcccCcCCHHHHHHhhc---ccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCC
Confidence 99999876 47899999999996 78999999998 57898862 47999999999999999999985311 111
Q ss_pred CCCC----cCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhH
Q 001990 777 TSPG----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 777 ~~~g----~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~ 852 (985)
.... ..+.|+++.|+||+|+. .|.++|++++++++.+.+...... .+.+. +...
T Consensus 216 ~~~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~l~~~~~~------------~~~~~------~~~~ 273 (386)
T 1u08_A 216 ASVLAHPQLRERAVAVSSFGKTYHM----TGWKVGYCVAPAPISAEIRKVHQY------------LTFSV------NTPA 273 (386)
T ss_dssp CCGGGSHHHHTTEEEEEEHHHHTTC----GGGCCEEEECCHHHHHHHHHHHHH------------HTSSC------CHHH
T ss_pred cChhcccCccCcEEEEecchhhcCC----cccceEEEEcCHHHHHHHHHHHHh------------hccCC------ChHH
Confidence 0111 24679999999999853 245689999988766544211000 00011 1111
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHH-HC
Q 001990 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DY 930 (985)
Q Consensus 853 ~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~-e~ 930 (985)
..++.+++.. +.+.+.+..++..++++++.+.|++ ++.+ ..+.+.. .+.++++. ....+..++.+.|. ++
T Consensus 274 ~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~--~~~~~g~--~~~~~~~~---~~~~~~~~~~~~l~~~~ 345 (386)
T 1u08_A 274 QLALADMLRA-EPEHYLALPDFYRQKRDILVNALNESRLEI--LPCEGTY--FLLVDYSA---VSTLDDVEFCQWLTQEH 345 (386)
T ss_dssp HHHHHHHHHH-CTHHHHTHHHHHHHHHHHHHHHTTSSSCEE--CCCCBSS--EEEEECTT---TCCSCHHHHHHHHHHHS
T ss_pred HHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHHHCCCee--cCCCceE--EEEEecCC---CCCCCHHHHHHHHHHhC
Confidence 2223334443 2455666777778888999999987 4433 2222222 23455541 00146788999886 68
Q ss_pred CCccCCC-CCC----CCCEEEEeccCCCCHHhhchHHHHHHHHHH
Q 001990 931 GFHGPTM-SWP----VPGTLMIEPTESESKVCHNREDLFFQILLS 970 (985)
Q Consensus 931 Gi~~~~~-~~p----v~~~lris~t~~~t~eeId~~~~~i~aL~~ 970 (985)
||.+... .+. .++.+|++++ ++++||+ ++++.|++
T Consensus 346 gi~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~---~~~~~l~~ 385 (386)
T 1u08_A 346 GVAAIPLSVFCADPFPHKLIRLCFA--KKESTLL---AAAERLRQ 385 (386)
T ss_dssp CEECEEGGGGCSSCCCSCEEEEECC--SCHHHHH---HHHHHHTT
T ss_pred CEEEeCchHhCCCCCCCCEEEEEEc--CCHHHHH---HHHHHHhh
Confidence 9987432 121 2478999997 4899999 98888753
No 131
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.80 E-value=5.9e-18 Score=192.53 Aligned_cols=285 Identities=16% Similarity=0.130 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHHHhCC--Ccccee-cChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEe
Q 001990 632 EMFNNLGEWLCTITGF--DSFSLQ-PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 632 ~~~~el~~~la~l~G~--~~~~~~-~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~ 708 (985)
++.+.+.+++.+.+|. +...+. .++++++...+ ++.+. .++++|++++..|..+...++..|.+++.+|
T Consensus 73 ~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~---~~~l~-----~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~ 144 (369)
T 3cq5_A 73 ELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQL---LQAFG-----GPGRTALGFQPSYSMHPILAKGTHTEFIAVS 144 (369)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHH---HHHHC-----STTCEEEEEESSCTHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHH---HHHhc-----CCCCEEEEcCCChHHHHHHHHHcCCEEEEec
Confidence 4444455555555554 444444 44445444333 33321 3678999998888777777788999999999
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccC---CCCCCcCC-
Q 001990 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVG---LTSPGYIG- 783 (985)
Q Consensus 709 ~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g---~~~~g~~g- 783 (985)
.++++.+|+++|++++++ .++++|++++| |++|.+. |++++.++|+.+++++++|++|...... +.....++
T Consensus 145 ~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~-~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 221 (369)
T 3cq5_A 145 RGADFRIDMDVALEEIRA--KQPDIVFVTTPNNPTGDVT-SLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPT 221 (369)
T ss_dssp CCTTSSCCHHHHHHHHHH--HCCSEEEEESSCTTTCCCC-CHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTT
T ss_pred CCcCCCCCHHHHHHHhhc--cCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCC
Confidence 887778999999999983 17888999998 4799998 8999999999999999999998633211 10012234
Q ss_pred CcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHh
Q 001990 784 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM 863 (985)
Q Consensus 784 ~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~l 863 (985)
.++++.|+||+|+. +|.++|++++++++.+.+.... ... + . +.....++.+++..
T Consensus 222 ~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~l~~~~------------~~~--~--~----~~~~~~a~~~~l~~- 276 (369)
T 3cq5_A 222 KLVVSRTMSKAFDF----AGGRLGYFVANPAFIDAVMLVR------------LPY--H--L----SALSQAAAIVALRH- 276 (369)
T ss_dssp TEEEEEESSSTTSC----GGGCCEEEEECTHHHHHHHTTS------------CTT--C--S----CHHHHHHHHHHHHT-
T ss_pred CEEEEEechHhcCC----cccceEEEEeCHHHHHHHHHcC------------CCC--C--C----CHHHHHHHHHHhcC-
Confidence 56889999999853 3567899999987665442110 000 1 1 11222223333432
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCC
Q 001990 864 GSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVP 942 (985)
Q Consensus 864 g~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~pv~ 942 (985)
.+.+.+..++..++++++.+.|++ ++.+. .+.+. .+.++++ .+..++.+.|.++||.+.... .+
T Consensus 277 -~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~---~~~~~~~-------~~~~~l~~~l~~~gi~v~~~~--~~ 341 (369)
T 3cq5_A 277 -SADTLGTVEKLSVERVRVAARLEELGYAVV--PSESN---FVFFGDF-------SDQHAAWQAFLDRGVLIRDVG--IA 341 (369)
T ss_dssp -HHHHHTHHHHHHHHHHHHHHHHHHHTCEEE--CCSSS---EEEEECC-------SSHHHHHHHHHHTTEECBCCS--CT
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhCCCEEC--CCCCe---EEEEECC-------CCHHHHHHHHHHCCEEEEECC--CC
Confidence 234556666777888999999986 55442 22222 2334442 367889999999999875432 24
Q ss_pred CEEEEeccCCCCHHhhchHHHHHHHHHHHHH
Q 001990 943 GTLMIEPTESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 943 ~~lris~t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
+.+|++++ +++|++ +++++|+++++
T Consensus 342 ~~iRis~~---~~~~i~---~~~~~l~~~~~ 366 (369)
T 3cq5_A 342 GHLRTTIG---VPEEND---AFLDAAAEIIK 366 (369)
T ss_dssp TEEEEECC---CHHHHH---HHHHHHHHHHT
T ss_pred CeEEEEeC---CHHHHH---HHHHHHHHHHh
Confidence 78999996 899999 99999988753
No 132
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.80 E-value=8.8e-19 Score=205.49 Aligned_cols=298 Identities=11% Similarity=0.125 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHhCCCc-cceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCCCcHHHHHhcC---------
Q 001990 633 MFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG--------- 701 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~-~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv-~~~~Hg~~~~~~~~~G--------- 701 (985)
...+++++++++++.+. ..++.+||++++++++.+++.|+..+|..++++||+ ...+||.........+
T Consensus 119 ~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~ 198 (457)
T 3tfu_A 119 PAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLW 198 (457)
T ss_dssp HHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC-------
T ss_pred HHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccc
Confidence 45689999999997544 347788999999888888888776666444557776 5577886654433211
Q ss_pred ----cEEEEEeCC--CCCCCCHHHHHHHHHhcCCCeEEEEEEc-C-CCcccccc---CHHHHHHHHHHcCCEEEEEcccc
Q 001990 702 ----MKIVSVGTD--AKGNINIEELRKAAEANRDNLSTLMVTY-P-STHGVYEE---GIDEICKIIHDNGGQVYMDGANM 770 (985)
Q Consensus 702 ----~~v~~v~~~--~~g~iDle~L~~~i~~~~~~t~~Vvi~~-p-n~~G~i~~---di~eI~~la~~~g~lliVD~a~~ 770 (985)
..+..++.. ..+..|+++|+++|+++.+++++|+++. + |..|.+.+ .+++|+++|++||++||+|+++.
T Consensus 199 ~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~ 278 (457)
T 3tfu_A 199 TDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIAT 278 (457)
T ss_dssp ---CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred cCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCcc
Confidence 123334432 2233689999999986556788888776 5 56787752 29999999999999999999873
Q ss_pred ccccCCCCCCc--------CCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCC---CCccccCCCCCCCCCCCCC
Q 001990 771 NAQVGLTSPGY--------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP---SHPVVSTGGIPAPEKSQPL 839 (985)
Q Consensus 771 ~~~~g~~~~g~--------~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lp---g~~~g~~~~~~~~~~~~~t 839 (985)
++.+.+. ..+|++++ .|.++ +|.+++|++++++++.+.+. ...+ ..+
T Consensus 279 ----g~gr~G~~~a~~~~~~~pdiit~--sK~l~----gG~~~lG~v~~~~~i~~~~~~~~~~~~-----------~~~- 336 (457)
T 3tfu_A 279 ----GFGRTGALFAADHAGVSPDIMCV--GKALT----GGYLSLAATLCTADVAHTISAGAAGAL-----------MHG- 336 (457)
T ss_dssp ----TTTTTSSSSTHHHHTCCCSEEEE--CGGGG----TTSSCCEEEEEEHHHHHHHHHSSSCSC-----------CCC-
T ss_pred ----CCccccchhHhHhcCCCceEEEE--Chhhh----CCCcceEEEEEcHHHHHHhhccCCCce-----------eEe-
Confidence 2222221 23688855 48763 33368999999988766541 1100 000
Q ss_pred CCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc--CC-ee-EcCCCCceeEEEEEEecCcccc
Q 001990 840 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH--YP-IL-FRGVNGTVAHEFIVDLRGLKNT 915 (985)
Q Consensus 840 ~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~--~~-i~-~~g~~~~~~~~~vv~~~~~~~~ 915 (985)
+ ++.+++..++++.+.+..+..+++ .++..++.++++++|++. +. +. ..+. +.+ +.+.+.
T Consensus 337 ~----t~~~n~~a~aaa~aaL~~~~~~~~---~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~-G~~---~~i~l~----- 400 (457)
T 3tfu_A 337 P----TFMANPLACAVSVASVELLLGQDW---RTRITELAAGLTAGLDTARALPAVTDVRVC-GAI---GVIECD----- 400 (457)
T ss_dssp C----TTTTCHHHHHHHHHHHHHHHTSCH---HHHHHHHHHHHHHHHGGGGGSTTEEEEEEC-SSC---EEEEES-----
T ss_pred c----CCCcCHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHHHHhcCCCeeeeecC-CeE---EEEEEC-----
Confidence 0 112244555566677776655544 345667778888888762 22 21 1111 221 234443
Q ss_pred CCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 916 AGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 916 ~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
.+.+..++.+.|.++||.+... .+.+|++|+..+|+||+| +++++|+++++++
T Consensus 401 ~~~~~~~~~~~l~~~Gv~v~~~----~~~lRi~p~~~~t~eei~---~~l~~L~~~l~~~ 453 (457)
T 3tfu_A 401 RPVDLAVATPAALDRGVWLRPF----RNLVYAMPPYICTPAEIT---QITSAMVEVARLV 453 (457)
T ss_dssp SCCCHHHHHHHHHHTTEECCCB----TTEEEECCCTTCCHHHHH---HHHHHHHHHHHHC
T ss_pred CcccHHHHHHHHHHCCeEEEec----CCEEEEECCCCCCHHHHH---HHHHHHHHHHHHh
Confidence 1345789999999999987532 478999999999999999 9999999988754
No 133
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.80 E-value=4.4e-19 Score=205.44 Aligned_cols=312 Identities=15% Similarity=0.124 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCC-
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA- 711 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~- 711 (985)
+..++++.+++++|.+. .+++++|++++..++.+++ ..++++||++...|..+...++..|++++.+++++
T Consensus 43 l~~~l~~~la~~~g~~~-~i~~~~gt~al~~~~~~~~-------~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 114 (418)
T 2c81_A 43 MERKFAKAFADFNGVPY-CVPTTSGSTALMLALEALG-------IGEGDEVIVPSLTWIATATAVLNVNALPVFVDVEAD 114 (418)
T ss_dssp HHHHHHHHHHHHHTCSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHhCCCc-EEEeCCHHHHHHHHHHHcC-------CCCcCEEEECCCccHhHHHHHHHcCCEEEEEecCCC
Confidence 56688999999999984 4667778766644443321 13678999999988887777888999999999986
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEcccccccc-CCCCCCcCCCcEEEeC
Q 001990 712 KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV-GLTSPGYIGADVCHLN 790 (985)
Q Consensus 712 ~g~iDle~L~~~i~~~~~~t~~Vvi~~pn~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~-g~~~~g~~g~Di~~~s 790 (985)
++.+|+++|+++++ +++++|++++ ++|... |+++|.++|+++|+++|+|++|..+.. .....+.+ .|+.+++
T Consensus 115 ~~~~d~~~l~~~i~---~~~~~v~~~~--~~G~~~-~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~-~~~~~~s 187 (418)
T 2c81_A 115 TYCIDPQLIKSAIT---DKTKAIIPVH--LFGSMA-NMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTI-GDIGAFS 187 (418)
T ss_dssp TCSBCHHHHGGGCC---TTEEEECCBC--CTTCCC-CHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SSEEEEE
T ss_pred CCCcCHHHHHHhhC---CCCeEEEEeC--CcCCcc-cHHHHHHHHHHCCCEEEEECcccccCccCCEecccc-cceEEEe
Confidence 68899999999987 6899988875 568887 899999999999999999999864421 11111222 2555555
Q ss_pred C--cccccccCCCCCCcceeeeec-ccccCcCCCC-ccccCCCC----CCCCCC--CCCCCcccccchh-hhHHHHHHHH
Q 001990 791 L--HKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSH-PVVSTGGI----PAPEKS--QPLGTIAAAPWGS-ALILPISYTY 859 (985)
Q Consensus 791 ~--hKtl~~p~g~GGPg~G~l~~~-~~l~~~lpg~-~~g~~~~~----~~~~~~--~~t~~i~s~~~g~-~~~~~~A~a~ 859 (985)
+ ||+|+ . | ++|+++++ +++.+.+... ..+..... ...... .++..+.+ ++. ...+.++
T Consensus 188 ~s~~K~~~----~-g-~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~aa--- 256 (418)
T 2c81_A 188 CQQGKVLT----A-G-EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQG--SNYCLSEFQSA--- 256 (418)
T ss_dssp CCTTSSSC----S-S-SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCC--CBCCCCHHHHH---
T ss_pred ccCCcccC----C-C-CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccC--cCCCcCHHHHH---
Confidence 5 99984 2 3 67888885 4544332110 00100000 000000 00111111 000 0011111
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcC-CCC--c-eeEEEEEEecCccccCCCCHHHHHHHHHHC-CCc-
Q 001990 860 IAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRG-VNG--T-VAHEFIVDLRGLKNTAGIEPEDVAKRLMDY-GFH- 933 (985)
Q Consensus 860 l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g-~~~--~-~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~-Gi~- 933 (985)
+.....+++.+..++..++++++.+.|++...+...+ +.+ . .++.+.+.++.. ...+.+..++.+.|.++ ||.
T Consensus 257 ~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~L~~~~gI~~ 335 (418)
T 2c81_A 257 ILLDQLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPV-KFGGLNADQFCEILREKLNMGT 335 (418)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGG-GTTTCCHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEEccc-cccccCHHHHHHHHHHcCCCCc
Confidence 1111224466666777778899999997632333322 212 1 122344555310 00146788999999998 998
Q ss_pred --cCCCCCC------------------------------C-------CCEEEEeccCCC-CHHhhchHHHHHHHHHHHHH
Q 001990 934 --GPTMSWP------------------------------V-------PGTLMIEPTESE-SKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 934 --~~~~~~p------------------------------v-------~~~lris~t~~~-t~eeId~~~~~i~aL~~i~~ 973 (985)
+.....| . .+.||++++..+ |+|||| +++++|+++++
T Consensus 336 ~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~---~~~~~l~~~~~ 412 (418)
T 2c81_A 336 FYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLS---LLVDAVAELAR 412 (418)
T ss_dssp TTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHH---HHHHHHHHHHH
T ss_pred ccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHH---HHHHHHHHHHH
Confidence 6432111 0 147999999999 999999 99999998876
Q ss_pred H
Q 001990 974 F 974 (985)
Q Consensus 974 ~ 974 (985)
+
T Consensus 413 ~ 413 (418)
T 2c81_A 413 K 413 (418)
T ss_dssp T
T ss_pred h
Confidence 4
No 134
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.80 E-value=1.8e-18 Score=200.90 Aligned_cols=303 Identities=12% Similarity=0.052 Sum_probs=197.1
Q ss_pred hcHHHHHHHHHHHHHHHhCC--Ccc-c-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcE
Q 001990 628 QGYQEMFNNLGEWLCTITGF--DSF-S-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~--~~~-~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~ 703 (985)
+|..++.+.+.+++.+.+|. +.. . ++.++|++++..++.++. .++++|+++...|..+...++..|++
T Consensus 77 ~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~Vl~~~p~y~~~~~~~~~~g~~ 148 (429)
T 1yiz_A 77 FGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHV--------DEGDEVIIIEPFFDCYEPMVKAAGGI 148 (429)
T ss_dssp SCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCE
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhc--------CCCCEEEEcCCCchhHHHHHHHcCCE
Confidence 45556666667777776784 333 3 555666666544443321 36789999888777777778889999
Q ss_pred EEEEeCCC----------CCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEcccc
Q 001990 704 IVSVGTDA----------KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANM 770 (985)
Q Consensus 704 v~~v~~~~----------~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~--di~eI~~la~~~g~lliVD~a~~ 770 (985)
++.+|.+. ++.+|+++|+++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++|+|+++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~ 225 (429)
T 1yiz_A 149 PRFIPLKPNKTGGTISSADWVLDNNELEALFN---EKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYE 225 (429)
T ss_dssp EEEEECBCCCSSSSEEGGGCBCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred EEEEeCCcccccccccccCcccCHHHHHHHhc---cCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEecccc
Confidence 99999865 35799999999996 78999999998 57898862 49999999999999999999985
Q ss_pred ccc-cC-----CCC-CCcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcc
Q 001990 771 NAQ-VG-----LTS-PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIA 843 (985)
Q Consensus 771 ~~~-~g-----~~~-~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~ 843 (985)
... .+ +.. ++..+.|+++.++||+|+. +|.++|++++++++.+.+..... ..+ .+
T Consensus 226 ~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~----~G~r~G~~~~~~~~~~~l~~~~~------------~~~--~~ 287 (429)
T 1yiz_A 226 HMVFEPFEHIRICTLPGMWERTITIGSAGKTFSL----TGWKIGWAYGPEALLKNLQMVHQ------------NCV--YT 287 (429)
T ss_dssp TCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTC----GGGCCEEEESCHHHHHHHHHHHH------------TTT--CC
T ss_pred ccccCCCCCcChhhccCCcCceEEEecchhccCC----CCcceEEEEeCHHHHHHHHHHHh------------hcc--cC
Confidence 311 11 101 1235679999999999853 24568999998876654321000 001 11
Q ss_pred cccchhhhHHHHHHHHHHHh----c--hhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccc--
Q 001990 844 AAPWGSALILPISYTYIAMM----G--SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKN-- 914 (985)
Q Consensus 844 s~~~g~~~~~~~A~a~l~~l----g--~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~-- 914 (985)
. +.....++.+++... + .+.+.+..++..++++++.+.|++ ++.+. .+.+.. .+.++++....
T Consensus 288 ~----~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~g~--~~~~~~~~~~~~~ 359 (429)
T 1yiz_A 288 C----ATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNPT--VPQGGY--FMVADWSSLDSKV 359 (429)
T ss_dssp C----CHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHTCEEE--ECSBSS--EEEEECCSSCTTT
T ss_pred C----ChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc--CCCcce--EEEEEcccccccc
Confidence 1 112222334445441 3 344666667778888999999987 44432 222222 23455542000
Q ss_pred -----cCCCCHHHHHHHHH-HCCCccCCC-CCC-------CCCEEEEeccCCCCHHhhchHHHHHHHHHHHH
Q 001990 915 -----TAGIEPEDVAKRLM-DYGFHGPTM-SWP-------VPGTLMIEPTESESKVCHNREDLFFQILLSLT 972 (985)
Q Consensus 915 -----~~g~~~~~l~~~L~-e~Gi~~~~~-~~p-------v~~~lris~t~~~t~eeId~~~~~i~aL~~i~ 972 (985)
....+..++.+.|. ++||.+... .+. .++.+|++++ ++++||+ ++++.|++++
T Consensus 360 ~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~i~---~~l~~l~~~l 426 (429)
T 1yiz_A 360 DLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KKDENLQ---KAAEILRKWK 426 (429)
T ss_dssp TCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC--SCHHHHH---HHHHHHHHHS
T ss_pred cccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec--CCHHHHH---HHHHHHHHhc
Confidence 00034678888886 789987532 121 1478999997 4899999 9999998764
No 135
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.80 E-value=3.9e-18 Score=193.20 Aligned_cols=280 Identities=15% Similarity=0.117 Sum_probs=184.3
Q ss_pred HHHHHHHHHHhCCCccceec-ChHHHHHHHHHHHHHHHHHhcCCCCC-CEEEEcCCCCCCcHHHHHhcCcEEEEEeCCCC
Q 001990 635 NNLGEWLCTITGFDSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHR-NVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 635 ~el~~~la~l~G~~~~~~~~-~sGa~g~~a~l~air~~~~~~g~~~~-~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~~ 712 (985)
.++++.+++++|.+...+.+ +++++++..+ ++.+. .++ ++|+++.+.|..+...++..|.+++.+|.+++
T Consensus 61 ~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~---~~~~~-----~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~ 132 (356)
T 1fg7_A 61 KAVIENYAQYAGVKPEQVLVSRGADEGIELL---IRAFC-----EPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDN 132 (356)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESHHHHHHHHH---HHHHC-----CTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCCTT
T ss_pred HHHHHHHHHHhCCChHHEEEcCCHHHHHHHH---HHHHh-----CCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCCCC
Confidence 47889999999988655444 4445554333 33321 356 89999988777777777888999999998877
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEEEcCC-CccccccC---HHHHHHHHHHcCCEEEEEccccccccC--CCC-CCcCCCc
Q 001990 713 GNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVG--LTS-PGYIGAD 785 (985)
Q Consensus 713 g~iDle~L~~~i~~~~~~t~~Vvi~~pn-~~G~i~~d---i~eI~~la~~~g~lliVD~a~~~~~~g--~~~-~g~~g~D 785 (985)
+.+|+++++++++ ++++|++++|| ++|.+. + +++|+++|+ +|+++++|+++...... +.. ...++.+
T Consensus 133 ~~~d~~~l~~~i~----~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 206 (356)
T 1fg7_A 133 WQLDLQGISDKLD----GVKVVYVCSPNNPTGQLI-NPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHL 206 (356)
T ss_dssp SCCCHHHHHTSCT----TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTE
T ss_pred CCCCHHHHHHHhc----CCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCE
Confidence 7899999988774 68999999995 699886 4 555566666 89999999998532211 111 1234567
Q ss_pred EEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhch
Q 001990 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~ 865 (985)
+++.|++|+|+. +|.++|++++++++.+.+.... .+.+. +.....++. ..+..
T Consensus 207 i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~l~~~~--------------~~~~~------~~~~~~a~~---~~l~~ 259 (356)
T 1fg7_A 207 AILRTLSKAFAL----AGLRCGFTLANEEVINLLMKVI--------------APYPL------STPVADIAA---QALSP 259 (356)
T ss_dssp EEEEESSSTTCC----GGGCCEEEEECHHHHHHHHHHS--------------CSSCS------CHHHHHHHH---HHTSH
T ss_pred EEEecchHhhcC----chhhhEEEEeCHHHHHHHHHhc--------------CCCCC------CHHHHHHHH---HHhcC
Confidence 888999999853 4677899999887765442100 00011 111122222 33333
Q ss_pred hh---HHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCC-CC-CC
Q 001990 866 KG---LTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT-MS-WP 940 (985)
Q Consensus 866 ~g---l~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~-~~-~p 940 (985)
.+ +.+..++..++++++.+.|++...+....+.... .+.++++ +..++.+.|.++||.+.. .. +.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~--~~~~~~~--------~~~~l~~~L~~~gI~v~~~g~~~~ 329 (356)
T 1fg7_A 260 QGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETN--YILARFK--------ASSAVFKSLWDQGIILRDQNKQPS 329 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSS--EEEEEET--------THHHHHHHHHHTTEECEECTTSTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCe--EEEEECC--------CHHHHHHHHHHCCEEEEECCCCCC
Confidence 33 5556667778889999999873222111121111 2344442 567899999999999754 22 22
Q ss_pred CCCEEEEeccCCCCHHhhchHHHHHHHHHHH
Q 001990 941 VPGTLMIEPTESESKVCHNREDLFFQILLSL 971 (985)
Q Consensus 941 v~~~lris~t~~~t~eeId~~~~~i~aL~~i 971 (985)
.++.+|++++ +++|++ +++++|+++
T Consensus 330 ~~~~iRis~~---~~~e~~---~~~~~l~~~ 354 (356)
T 1fg7_A 330 LSGCLRITVG---TREESQ---RVIDALRAE 354 (356)
T ss_dssp CTTEEEEECC---CHHHHH---HHHHHHHTC
T ss_pred CCCeEEEEeC---CHHHHH---HHHHHHHhh
Confidence 3478999985 689999 999998753
No 136
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.80 E-value=2.7e-18 Score=192.23 Aligned_cols=277 Identities=10% Similarity=0.102 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHhCCCccceecChHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCCC
Q 001990 634 FNNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~~~~~~sGa~-g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~~ 712 (985)
..++++.+++++|.+...+.+++|++ +. .++++. . ++++|+++.+.|..+...++..|++++.+|.+++
T Consensus 53 ~~~lr~~la~~~~~~~~~i~~t~G~~~~l---~~~~~~------~-~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~ 122 (337)
T 3p1t_A 53 EPRVMRKLAEHFSCPEDNLMLVRGIDECF---DRISAE------F-SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTDD 122 (337)
T ss_dssp HHHHHHHHHHHHTSCGGGEEEESHHHHHH---HHHHHH------S-TTSEEEEESSSCSHHHHHHTTSCCEEEEECBCTT
T ss_pred hHHHHHHHHHHhCcCHHHEEEeCCHHHHH---HHHHHh------c-CCCeEEEeCCCcHHHHHHHHHcCCEEEEecCCCC
Confidence 56788999999999875555555544 33 233332 1 5689999998887777778889999999999888
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCC--CCCCcCCCcEEEe
Q 001990 713 GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL--TSPGYIGADVCHL 789 (985)
Q Consensus 713 g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~--~~~g~~g~Di~~~ 789 (985)
+.+|+++|+++ .++++|++++| |++|.+. |++++.++|+++++ +++|+++.. +... ..+...+.++++.
T Consensus 123 ~~~d~~~l~~~-----~~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~-~ivDea~~~-~~~~~~~~~~~~~~~i~~~ 194 (337)
T 3p1t_A 123 LLLDPNDLAQV-----SRDDCVVLANPSNPTGQAL-SAGELDQLRQRAGK-LLIDETYVD-YSSFRARGLAYGENELVFR 194 (337)
T ss_dssp SSBCHHHHTTC-----CTTEEEEEESSCTTTCCCC-CHHHHHHHHHHCSE-EEEECTTGG-GSSCSSSCCCCBTTEEEEE
T ss_pred CCCCHHHHHhh-----cCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCc-EEEECCChh-hccccccccccCCCEEEEe
Confidence 89999998764 46789999999 5799998 89999999999997 667999852 2211 1122335678999
Q ss_pred CCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhchhhHH
Q 001990 790 NLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 790 s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~ 869 (985)
|+||+|+. .|.++|++++++++.+.+.... ...+.+ .....++.+++.. .+.+.
T Consensus 195 S~sK~~g~----~G~r~G~~~~~~~~~~~l~~~~--------------~~~~~~------~~~~~a~~~~l~~--~~~~~ 248 (337)
T 3p1t_A 195 SFSKSYGL----AGLRLGALFGPSELIAAMKRKQ--------------WFCNVG------TLDLHALEAALDN--DRARE 248 (337)
T ss_dssp ESSSTTCC----TTTCCEEEECCHHHHHHHHTTS--------------CTTCSC------HHHHHHHHHHHTC--HHHHH
T ss_pred eCchhccC----cchheEEEEeCHHHHHHHHhhc--------------CCCCCC------HHHHHHHHHHhCC--HHHHH
Confidence 99999853 4678899999887765442110 000111 1111222222321 22345
Q ss_pred HHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-CCCCCEEEE
Q 001990 870 EASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-WPVPGTLMI 947 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~-~pv~~~lri 947 (985)
+..++..++++++.+.|++ ++.+. .+.+.+ +.+... +..++.+.|.++||.+.... +..++.+|+
T Consensus 249 ~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~---~~~~~~--------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi 315 (337)
T 3p1t_A 249 AHIAKTLAQRRRVADALRGLGYRVA--SSEANF---VLVENA--------AGERTLRFLRERGIQVKDAGQFGLHHHIRI 315 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCBC--CCSSSE---EEEECT--------TTHHHHHHHHHTTEECEEGGGGTCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCcCEEC--CCCCeE---EEEEcC--------CHHHHHHHHHHCCeEEEECccCCCCCeEEE
Confidence 5556667778889999987 44432 222221 233332 34678889999999875322 223589999
Q ss_pred eccCCCCHHhhchHHHHHHHHHHHHH
Q 001990 948 EPTESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 948 s~t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
+++ +++|++ +|+++|+++.+
T Consensus 316 s~~---~~~~~~---~l~~al~~~~~ 335 (337)
T 3p1t_A 316 SIG---REEDND---RLLAALAEYSD 335 (337)
T ss_dssp ECC---CHHHHH---HHHHHHHHHTC
T ss_pred ecC---CHHHHH---HHHHHHHHHhh
Confidence 985 799999 99999988643
No 137
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.80 E-value=5.7e-18 Score=194.01 Aligned_cols=323 Identities=12% Similarity=0.076 Sum_probs=214.2
Q ss_pred CCCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHHHHHHHHHhhCCCCc-ceeeccchHHHHHHHHHHhhhhcCCC
Q 001990 177 NTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMS-NASLLDEGTAAAEAMAMCNNIQKGKK 255 (985)
Q Consensus 177 ~~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g~~~~-~~sl~~~~ta~~ea~~~a~~~~~~~g 255 (985)
|..+|+.+.+++.+.. ...|+|+ ....+.++++.+|+++|.+.. ++.+++|+|.++++++.++ .. +|
T Consensus 26 p~~~~~~v~~a~~~~~--~~~~~~~-------~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~-~~--~g 93 (396)
T 2ch1_A 26 PSNCSKRVLTAMTNTV--LSNFHAE-------LFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNL-LE--EG 93 (396)
T ss_dssp SCCCCHHHHHHTTSCC--CCTTCHH-------HHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH-CC--TT
T ss_pred CCCCCHHHHHHhcccc--ccCCChh-------HHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHh-cC--CC
Confidence 4457777765544321 1123321 123466788999999999887 7888899999888877665 23 78
Q ss_pred CEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHh
Q 001990 256 KTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHA 324 (985)
Q Consensus 256 ~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~--------~~l~~-l~~-~t~~V~v~~p-n~~G~i~dl~~I~~~a~~ 324 (985)
|+|++++..|+++. +...++..|++++.++. +++++ +++ ++++|++++| |++|.+.|+++|.++|++
T Consensus 94 d~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~ 171 (396)
T 2ch1_A 94 DRVLIAVNGIWAER--AVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQ 171 (396)
T ss_dssp CEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHH
T ss_pred CeEEEEcCCcccHH--HHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHHHHHHHH
Confidence 99999999999874 21223456888877753 35555 555 7899999998 789999999999999999
Q ss_pred CCcEEEEEeccccccCCC-CCCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCc---eeeeeecCCCCcc
Q 001990 325 NGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGR---IVGVSIDSSGKPA 399 (985)
Q Consensus 325 ~galliV~a~~~alg~l~-~p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~---~vG~s~d~~g~~~ 399 (985)
+|+++++| +..++|... ....+|+|+++.+. |++++ +|++|++++++++++.+... +-.+..+ ...
T Consensus 172 ~~~~li~D-ea~~~g~~~~~~~~~~~d~~~~s~~K~~~~-----~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 242 (396)
T 2ch1_A 172 HDCLLIVD-AVASLCGVPFYMDKWEIDAVYTGAQKVLGA-----PPGITPISISPKALDVIRNRRTKSKVFYWD---LLL 242 (396)
T ss_dssp TTCEEEEE-CTTTBTTBCCCTTTTTCCEEECCCC-CCCC-----CSSCEEEEECHHHHHHHHTCSSCCSCGGGC---HHH
T ss_pred cCCEEEEE-ccccccCCccchhhcCcCEEEEcCCccccC-----CCCeEEEEECHHHHHhhhhccCcccceEec---hHH
Confidence 99999995 344555332 23568899999887 66753 35679999999877665211 1000000 000
Q ss_pred eEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCC---c-
Q 001990 400 LRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPF---F- 475 (985)
Q Consensus 400 ~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~---~- 475 (985)
+...+ ..++..+...+|.|. ....++.+++ ..+..++++++.++..++++++.+.|+++| ++++.+.. .
T Consensus 243 ~~~~~-~~~~~~~~~~~~~~~---~~~~a~~~al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~ 315 (396)
T 2ch1_A 243 LGNYW-GCYDEPKRYHHTVAS---NLIFALREAL--AQIAEEGLENQIKRRIECAQILYEGLGKMG-LDIFVKDPRHRLP 315 (396)
T ss_dssp HHHHT-TCSSSCCCCCCCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHHT-CCBSSCSGGGBCT
T ss_pred HHHhh-hhhcccCCCCCCCcH---HHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHHCC-CeeccCCccccCC
Confidence 00000 000011122344443 2333444443 444456889999999999999999999886 87764321 1
Q ss_pred ceEEEecC-C--HHHHHHHHHHc-Cceeeee----cCCeEEEEec-cCCCHHHHHHHHHHHhC
Q 001990 476 DTVKVKCA-D--AHAIASAAYKI-EMNLRVV----DSNTVTASFD-ETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 476 ~~~~i~~~-~--~~~l~~~L~~~-Gi~~~~~----~~~~lris~~-~~~t~edid~ll~~l~~ 529 (985)
..+.+..+ + ..++.++|.++ ||.++.. .++.+|++++ ..++++|+++++++|..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~ 378 (396)
T 2ch1_A 316 TVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKE 378 (396)
T ss_dssp TEEEEECCTTCCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHH
Confidence 23556665 2 78899999875 9988642 3578999995 56789999999999974
No 138
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.80 E-value=6.6e-19 Score=199.58 Aligned_cols=280 Identities=12% Similarity=0.072 Sum_probs=189.3
Q ss_pred HHHHHHHHHHhCCCccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCCCC
Q 001990 635 NNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG 713 (985)
Q Consensus 635 ~el~~~la~l~G~~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~~g 713 (985)
.++++.+++++|.+... +++++|++++..++.++. .++++|+++...|..+...++..|++++.+|.++++
T Consensus 68 ~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~ 139 (360)
T 3hdo_A 68 QKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFA--------AEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTGDF 139 (360)
T ss_dssp HHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCTTS
T ss_pred HHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHHh--------CCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCCCC
Confidence 47889999999987654 555666666544433321 367899999887777777778899999999997765
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCC---CcCCCcEEEe
Q 001990 714 NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP---GYIGADVCHL 789 (985)
Q Consensus 714 ~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~---g~~g~Di~~~ 789 (985)
.+ +++++.+ ++++|++++| |++|.+. |+++|.++|+++|+++++|++|.. +.+-... ...+.++++.
T Consensus 140 ~~--~~l~~~~-----~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~li~De~~~~-~~~~~~~~~~~~~~~~i~~~ 210 (360)
T 3hdo_A 140 RI--AGFPERY-----EGKVFFLTTPNAPLGPSF-PLEYIDELARRCAGMLVLDETYAE-FAESNALELVRRHENVVVTR 210 (360)
T ss_dssp SB--TTCCSSB-----CSSEEEEESSCTTTCCCC-CHHHHHHHHHHBSSEEEEECTTGG-GSSCCCTHHHHHCSSEEEEE
T ss_pred CH--HHHHhhc-----CCCEEEEeCCCCCCCCCc-CHHHHHHHHHHCCCEEEEECChHh-hCCcchhHHhccCCCEEEEe
Confidence 55 4443322 3458888998 5799998 899999999999999999999853 2211100 1234568888
Q ss_pred CCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhchhhHH
Q 001990 790 NLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLT 869 (985)
Q Consensus 790 s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~ 869 (985)
|+||+|+. +|.++|++++++++.+.+.... .+ ... +.....++.+++.. .+.+.
T Consensus 211 s~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~--------------~~--~~~----~~~~~~a~~~~l~~--~~~~~ 264 (360)
T 3hdo_A 211 TLSKSYSL----AGMRIGLAIARPEVIAALDKIR--------------DH--YNL----DRLAQAACVAALRD--QAYLS 264 (360)
T ss_dssp ESTTTTSC----TTSCCEEEECCHHHHHHHHHHS--------------CS--CCS----CHHHHHHHHHHHHC--HHHHH
T ss_pred cchHhhcC----CccceeeEeeCHHHHHHHHHhC--------------CC--CCC----CHHHHHHHHHHhcC--HHHHH
Confidence 99999853 4678899999877765442110 00 011 11222223334432 34466
Q ss_pred HHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC-CCCEEEE
Q 001990 870 EASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP-VPGTLMI 947 (985)
Q Consensus 870 ~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~p-v~~~lri 947 (985)
+..++..++++++.+.|++ ++.+ ..+.+.+ +.+.++ +.+..++.+.|.++||.+.....+ .++.+|+
T Consensus 265 ~~~~~~~~~~~~l~~~L~~~~~~~--~~~~~~~---~~~~~~------~~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRi 333 (360)
T 3hdo_A 265 ECCRRIRETREWFTTELRSIGYDV--IPSQGNY---LFATPP------DRDGKRVYDGLYARKVLVRHFSDPLLAHGMRI 333 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEE--CCCSSSE---EEEECT------TCCHHHHHHHHHHTTEECBCCCSTTTTTSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEE--cCCCccE---EEEECC------CCCHHHHHHHHHHCCEEEEECCCCCCCCEEEE
Confidence 6777778888999999987 4433 2222222 334443 467889999999999998644322 3578999
Q ss_pred eccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 948 EPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 948 s~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
+++ |++|+| +|+++|+++.+.
T Consensus 334 s~~---~~~e~~---~l~~al~~~~~~ 354 (360)
T 3hdo_A 334 SIG---TREEME---QTLAALKEIGEG 354 (360)
T ss_dssp ECC---CHHHHH---HHHHHHHHHHC-
T ss_pred EcC---CHHHHH---HHHHHHHHHhcc
Confidence 985 999999 999999987653
No 139
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.80 E-value=2.7e-19 Score=203.81 Aligned_cols=296 Identities=13% Similarity=0.049 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCC-C
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD-A 711 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~-~ 711 (985)
...++++.+++++|.+. .+++++|++++..++.++. ..++++|+++...|..+...++..|++++.++++ +
T Consensus 37 ~~~~l~~~la~~~~~~~-~i~~~sgt~al~~~l~~l~-------~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 108 (373)
T 3frk_A 37 EDKKFEQEFADYCNVNY-CIGCGNGLDALHLILKGYD-------IGFGDEVIVPSNTFIATALAVSYTGAKPIFVEPDIR 108 (373)
T ss_dssp HHHHHHHHHHHHHTSSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEETTSCTHHHHHHHHHSCEEEEECEETT
T ss_pred hHHHHHHHHHHHhCCCe-EEEeCCHHHHHHHHHHHcC-------CCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecccc
Confidence 46689999999999874 4667788876654444331 2467899999998888777788899999999987 4
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCC--CcEEEe
Q 001990 712 KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG--ADVCHL 789 (985)
Q Consensus 712 ~g~iDle~L~~~i~~~~~~t~~Vvi~~pn~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g--~Di~~~ 789 (985)
++.+|+++|+++++ +++++|++++ ++|... |+++|.++|+++|+++|+|++|..+.. + ....++ .|++++
T Consensus 109 ~~~~d~~~l~~~l~---~~~~~v~~~n--~~G~~~-~l~~i~~l~~~~~~~li~D~a~~~g~~-~-~~~~~~~~~d~~~~ 180 (373)
T 3frk_A 109 TYNIDPSLIESAIT---EKTKAIIAVH--LYGQPA-DMDEIKRIAKKYNLKLIEDAAQAHGSL-Y-KGMKVGSLGDAAGF 180 (373)
T ss_dssp TTEECGGGTGGGCC---TTEEEEEEEC--CTTCCC-CHHHHHHHHHHHTCEEEEECTTCTTCE-E-TTEETTSSSSEEEE
T ss_pred ccCcCHHHHHHhcC---CCCeEEEEEC--CCcCcc-cHHHHHHHHHHcCCEEEEECCcccCCE-E-CCEeccccccEEEE
Confidence 68899999999987 7899888654 679887 899999999999999999999864332 1 122334 799988
Q ss_pred C--CcccccccCCCCC-Ccceeeeecc-cccCcCCCC-ccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhc
Q 001990 790 N--LHKTFCIPHGGGG-PGMGPIGVKK-HLAPFLPSH-PVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 790 s--~hKtl~~p~g~GG-Pg~G~l~~~~-~l~~~lpg~-~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg 864 (985)
| .||+++ | +.+|++++++ ++.+.+... ..|.... ... ...+. +.. . ..+.++.. ...
T Consensus 181 S~~~~K~l~------~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~-~~~-~~~g~-~~~-----~-~~~~aa~~---~~~ 242 (373)
T 3frk_A 181 SFYPAKNLG------SLGDGGAVVTNDKDLAEKIKALSNYGSEKK-YHH-IYKGF-NSR-----L-DELQAGFL---RVK 242 (373)
T ss_dssp ECCTTSSSC------CSSSCEEEEESCHHHHHHHHHHHBTTCSBT-TBC-CSCCC-BCC-----C-CHHHHHHH---HHH
T ss_pred eCcCCCccC------ccceeEEEEeCCHHHHHHHHHHHhcCcccC-Ccc-ccccc-cCC-----C-CHHHHHHH---HHH
Confidence 8 459873 3 2357777764 343222110 0010000 000 00010 111 1 11122222 222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCC-CC--ceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-CC
Q 001990 865 SKGLTEASKIAILNANYMAKRLEKHYPILFRGV-NG--TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-WP 940 (985)
Q Consensus 865 ~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~-~~--~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~-~p 940 (985)
.+++.+..++..++++++.+.|++.. +..+.. .+ ..+..+.+.. .+..++.+.|.++||.+.... .|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~gI~v~~~~~~~ 313 (373)
T 3frk_A 243 LKYLDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRS--------EKRDELQKYLNNNGIGTLIHYPIP 313 (373)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEE--------SSHHHHHHHHHHTTBCCBCSCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEe--------CCHHHHHHHHHHCCCCcccCcCCc
Confidence 34556666777788889998887632 322211 11 1111223332 267899999999999875322 11
Q ss_pred C-----------------------CCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 941 V-----------------------PGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 941 v-----------------------~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
. .+.||++++..+|++||| +++++|++...+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~---~~~~~l~~~~~~ 367 (373)
T 3frk_A 314 IHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIE---YVIDKINAWKLE 367 (373)
T ss_dssp GGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHH---HHHHHHHTCC--
T ss_pred cccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHH---HHHHHHHHHhhh
Confidence 0 157999999999999999 999999876543
No 140
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.80 E-value=6.5e-19 Score=203.50 Aligned_cols=302 Identities=13% Similarity=0.061 Sum_probs=196.6
Q ss_pred hcHHHHHHHHHHHHHHHhCCC--cc-c-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcE
Q 001990 628 QGYQEMFNNLGEWLCTITGFD--SF-S-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~~--~~-~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~ 703 (985)
+|..++.+.+.+++.+.+|.+ .. . +++++|++++..++.++. .++++|+++...|..+...++..|++
T Consensus 62 ~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~--------~~gd~Vl~~~~~y~~~~~~~~~~g~~ 133 (411)
T 2o0r_A 62 PGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLV--------EPGSEVLLIEPFYDSYSPVVAMAGAH 133 (411)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhc--------CCCCEEEEeCCCcHhHHHHHHHcCCE
Confidence 455566666777777777853 33 3 455556665544433321 36789999988887777778889999
Q ss_pred EEEEeCCCC---CCCCHHHHHHHHHhcCCCeEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEcccccccc-C-
Q 001990 704 IVSVGTDAK---GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQV-G- 775 (985)
Q Consensus 704 v~~v~~~~~---g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~--di~eI~~la~~~g~lliVD~a~~~~~~-g- 775 (985)
++.+|.+++ +.+|+++|+++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++++|++|..... +
T Consensus 134 ~~~v~~~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~ 210 (411)
T 2o0r_A 134 RVTVPLVPDGRGFALDADALRRAVT---PRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHA 210 (411)
T ss_dssp EEEEECEEETTEEECCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC
T ss_pred EEEeeccccccCCCCCHHHHHHhhc---cCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC
Confidence 999998653 5699999999997 78999999998 57998851 479999999999999999999853211 1
Q ss_pred -CCCC----CcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhh
Q 001990 776 -LTSP----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 776 -~~~~----g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~ 850 (985)
.... +..+.|+++.|+||+|+. .|.++|++++++++.+.+...... .+.+.+ .
T Consensus 211 ~~~~~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~l~~~~~~------------~~~~~~--~---- 268 (411)
T 2o0r_A 211 RHLPLAGFDGMAERTITISSAAKMFNC----TGWKIGWACGPAELIAGVRAAKQY------------LSYVGG--A---- 268 (411)
T ss_dssp CCCCGGGSTTTGGGEEEEEEHHHHTTC----TTTCEEEEECCHHHHHHHHHHHHH------------HTSCCC--T----
T ss_pred CCcChhhccCCCCCEEEEeechhhcCC----ccceEEEEeeCHHHHHHHHHHHhh------------ccCCCC--h----
Confidence 0011 124679999999999853 245689999988766543211000 000111 1
Q ss_pred hHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHH-
Q 001990 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM- 928 (985)
Q Consensus 851 ~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~- 928 (985)
....++.+++.. +.+.+.+..++..++++++.+.|++ ++.+ ..+.+.. .+.++++.. .+.+..++.+.|.
T Consensus 269 ~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~--~~~~~g~--~~~~~~~~~---~~~~~~~~~~~l~~ 340 (411)
T 2o0r_A 269 PFQPAVALALDT-EDAWVAALRNSLRARRDRLAAGLTEIGFAV--HDSYGTY--FLCADPRPL---GYDDSTEFCAALPE 340 (411)
T ss_dssp THHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHTCEE--CCCCBSS--EEEEECGGG---TCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHHcCCEe--cCCCeeE--EEEEecCCC---CCCCHHHHHHHHHH
Confidence 111222333432 3555666777778888999999987 4443 2222222 234555410 1246788999886
Q ss_pred HCCCccCCC-CC-C------------CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 929 DYGFHGPTM-SW-P------------VPGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 929 e~Gi~~~~~-~~-p------------v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
++||.+... .+ + .++.+|+++. ++++|++ ++++.|++++++.
T Consensus 341 ~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~---~~~~~l~~~~~~~ 396 (411)
T 2o0r_A 341 KVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLD---EAIRRLSVLAERP 396 (411)
T ss_dssp HHSEECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHH---HHHHHHGGGGC--
T ss_pred hCCEEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHH---HHHHHHHHHHhcc
Confidence 679987421 11 1 2467999986 4899999 9999998876544
No 141
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.80 E-value=7.3e-19 Score=200.00 Aligned_cols=297 Identities=11% Similarity=0.058 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCCC
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~~ 712 (985)
...++++.+++++|.+. .+++++|++++..++.+++ ..++++|+++...|..+...++..|++++.++++++
T Consensus 39 ~~~~l~~~la~~~~~~~-~~~~~~gt~a~~~~~~~~~-------~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 110 (374)
T 3uwc_A 39 ELEKFEKRFAALHNAPH-AIGVGTGTDALAMSFKMLN-------IGAGDEVITCANTFIASVGAIVQAGATPVLVDSENG 110 (374)
T ss_dssp HHHHHHHHHHHHTTCSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTT
T ss_pred hHHHHHHHHHHHhCCCc-EEEeCCHHHHHHHHHHHcC-------CCCCCEEEECCCccHHHHHHHHHcCCEEEEEecCCC
Confidence 35688999999999884 4667778876654444331 146789999998887777777889999999999877
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCC--CcEEEeC
Q 001990 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG--ADVCHLN 790 (985)
Q Consensus 713 g~iDle~L~~~i~~~~~~t~~Vvi~~pn~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g--~Di~~~s 790 (985)
+.+|+++|+++++ +++++|+++ |++|.+. |+++|+++|+++|+++|+|++|..+.. + ....++ .|++++|
T Consensus 111 ~~~d~~~l~~~~~---~~~~~v~~~--n~~G~~~-~~~~i~~~~~~~~~~li~D~~~~~g~~-~-~~~~~~~~~d~~~~s 182 (374)
T 3uwc_A 111 YVIDPEKIEAAIT---DKTKAIMPV--HYTGNIA-DMPALAKIAKKHNLHIVEDACQTILGR-I-NDKFVGSWGQFACFS 182 (374)
T ss_dssp SSBCGGGTGGGCC---TTEEEECCB--CGGGCCC-CHHHHHHHHHHTTCEEEEECTTCTTCE-E-TTEETTSSSSEEEEE
T ss_pred CCcCHHHHHHhCC---CCceEEEEe--CCcCCcC-CHHHHHHHHHHcCCEEEEeCCCccCce-e-CCeeccccccEEEEe
Confidence 8999999999987 688888733 4689988 899999999999999999999864322 1 111222 6999999
Q ss_pred Cc--ccccccCCCCCC-cceeeeecc-cccCcCCCC-ccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhch
Q 001990 791 LH--KTFCIPHGGGGP-GMGPIGVKK-HLAPFLPSH-PVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 791 ~h--Ktl~~p~g~GGP-g~G~l~~~~-~l~~~lpg~-~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~ 865 (985)
+| |+|+ |+ .+|++++++ .+.+.+... ..+... .+.....+.+... .. +.++ +.....
T Consensus 183 ~~~~K~l~------~~g~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----~~--~~aa---~~~~~~ 244 (374)
T 3uwc_A 183 LHPLKNLN------VWSDAGVIITHSDEYAEKLRLYRNHGLIN---RDVCVEYGINCRM----DT--IQAV---IANRLM 244 (374)
T ss_dssp CSSSSSSC------CSSCCEEEEESCHHHHHHHHHHTBTTEEE---TTEESSCCCBCBC----CH--HHHH---HHHHHG
T ss_pred CCCCCcCC------ccceeEEEEeCCHHHHHHHHHHHhcCccc---cCccccccccCCC----CH--HHHH---HHHHHH
Confidence 88 9883 31 367777664 343222100 001000 0000000111110 11 1111 222223
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCC-eeEcCC-CC--ceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-CC
Q 001990 866 KGLTEASKIAILNANYMAKRLEKHYP-ILFRGV-NG--TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-WP 940 (985)
Q Consensus 866 ~gl~~~~~~~~~~a~~l~~~L~~~~~-i~~~g~-~~--~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~-~p 940 (985)
+++.+..++..++++++.+.|++... +..... .. ..+..+.+.. .+..++.+.|.++||.+.... .|
T Consensus 245 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~L~~~gi~v~~~~~~~ 316 (374)
T 3uwc_A 245 NQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRV--------KYRDQLFQYLKDNGIEVKIHYPIA 316 (374)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEE--------TTHHHHHHHHHHTTBCCBCSCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEc--------CCHHHHHHHHHHCCCccccCCCCc
Confidence 55666677778888999999987322 322211 11 1111222332 257889999999999875322 11
Q ss_pred ----------------C-------CCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 941 ----------------V-------PGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 941 ----------------v-------~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
. .+.+|++++..+|++||| +++++|++++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~---~~~~~l~~~l~~ 370 (374)
T 3uwc_A 317 MHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEIN---YIIKKVREFYLE 370 (374)
T ss_dssp GGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHH---HHHHHHHHHHHT
T ss_pred cccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHH---HHHHHHHHHHHh
Confidence 0 167999999999999999 999999998764
No 142
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.80 E-value=3.5e-18 Score=195.77 Aligned_cols=348 Identities=11% Similarity=0.076 Sum_probs=211.7
Q ss_pred HHHHHHHHHHhcCccCcCcccccccceecccCccccccccccccccc-cCCCCcchhhhcHHHHHHHHHHHHHHHhCC--
Q 001990 571 HELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFAN-IHPFAPADQAQGYQEMFNNLGEWLCTITGF-- 647 (985)
Q Consensus 571 ~e~~~~l~~l~~~~~~~~~~~~~lGs~~~~~~~~~~~~~~~~~~f~~-~~p~~p~e~~~G~~~~~~el~~~la~l~G~-- 647 (985)
.++.+..+++...+. .++.|+++.+.++...+..........+ ...|.+ ..|..++.+.+.+++.+.+|.
T Consensus 17 ~~~~~~~~~~~~~g~----~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~y~~---~~g~~~lr~~ia~~~~~~~g~~~ 89 (391)
T 3h14_A 17 MDVMEAARRAEEAGR----RIIHMEVGQPGTGAPRGAVEALAKSLETDALGYTV---ALGLPALRQRIARLYGEWYGVDL 89 (391)
T ss_dssp HHHHHHHHHHHHTTC----CCEECCCSSCSSCSCHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhcCC----CeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCC---CCChHHHHHHHHHHHHHHhCCCC
Confidence 445555555554432 3567777666555432222211101100 111222 245555666666666666674
Q ss_pred Cccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCCC--CCCCHHHHHHHH
Q 001990 648 DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK--GNINIEELRKAA 724 (985)
Q Consensus 648 ~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~~--g~iDle~L~~~i 724 (985)
+... +++++|++++..++.++. .++++|+++.+.|..+...++..|++++.+|++++ ..+|+++|+++
T Consensus 90 ~~~~v~~t~g~~~al~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~- 160 (391)
T 3h14_A 90 DPGRVVITPGSSGGFLLAFTALF--------DSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL- 160 (391)
T ss_dssp CGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS-
T ss_pred CHHHEEEecChHHHHHHHHHHhc--------CCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc-
Confidence 3333 555666666544433321 36789999888776666667889999999999765 36799998754
Q ss_pred HhcCCCeEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cC-CCCCCc-CCCcEEEeCCccccccc
Q 001990 725 EANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VG-LTSPGY-IGADVCHLNLHKTFCIP 798 (985)
Q Consensus 725 ~~~~~~t~~Vvi~~p-n~~G~i~~--di~eI~~la~~~g~lliVD~a~~~~~-~g-~~~~g~-~g~Di~~~s~hKtl~~p 798 (985)
++++|++++| |++|.+.+ ++++|+++|+++|+++|+|++|.... .+ ...... .+.++++.+++|+|+.
T Consensus 161 -----~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~- 234 (391)
T 3h14_A 161 -----DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSM- 234 (391)
T ss_dssp -----CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCC-
T ss_pred -----CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCC-
Confidence 5788999999 57999872 39999999999999999999985211 11 111111 2456888899999853
Q ss_pred CCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHH
Q 001990 799 HGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILN 878 (985)
Q Consensus 799 ~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~ 878 (985)
.|.++|++++++++.+.+..... ..+.+ . +.....++.+.+. ..+.+.+..++..++
T Consensus 235 ---~G~r~G~~~~~~~~~~~~~~~~~------------~~~~~--~----~~~~~~a~~~~l~--~~~~~~~~~~~~~~~ 291 (391)
T 3h14_A 235 ---TGWRVGWMVVPEDQVRVVERIAQ------------NMFIC--A----PHASQVAALAALD--CDAELQANLDVYKAN 291 (391)
T ss_dssp ---TTSCCEEEECCGGGHHHHHHHHH------------HTTCC--C----CHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred ---ccceeEEEEeCHHHHHHHHHHHh------------hhccC--C----CHHHHHHHHHHhC--ChHHHHHHHHHHHHH
Confidence 46789999998877654421000 00111 1 1111122223333 455667777778888
Q ss_pred HHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHC-CCccCCCC-CC---CCCEEEEeccCC
Q 001990 879 ANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY-GFHGPTMS-WP---VPGTLMIEPTES 952 (985)
Q Consensus 879 a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~-Gi~~~~~~-~p---v~~~lris~t~~ 952 (985)
++++.+.|++ ++..... +.+..+ +.++++. .+.+..++.+.|.++ ||.+.... +. .++.+|++++.
T Consensus 292 ~~~l~~~l~~~~~~~~~~-~~~~~~--~~~~~~~----~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~- 363 (391)
T 3h14_A 292 RKLMLERLPKAGFTRIAP-PDGAFY--VYADVSD----LTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR- 363 (391)
T ss_dssp HHHHHHHHHHHTCCCBCC-CCBTTE--EEEECTT----TCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS-
T ss_pred HHHHHHHHHHcCCCcccC-CCeeEE--EEEecCc----cCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC-
Confidence 8999999987 3332222 222222 3445541 145788999998775 99874321 21 24789999886
Q ss_pred CCHHhhchHHHHHHHHHHHHHHH
Q 001990 953 ESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 953 ~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
+++|++ ++++.|++++++.
T Consensus 364 -~~~~i~---~~l~~l~~~~~~~ 382 (391)
T 3h14_A 364 -ATADIE---EGLDRLEAFMQAR 382 (391)
T ss_dssp -CHHHHH---HHHHHHHHHHHHC
T ss_pred -CHHHHH---HHHHHHHHHHHHh
Confidence 789999 9999999987753
No 143
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.80 E-value=5.7e-18 Score=198.09 Aligned_cols=296 Identities=19% Similarity=0.179 Sum_probs=192.7
Q ss_pred HHHHHH-HHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHH-----HHhcCcEEEE
Q 001990 633 MFNNLG-EWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT-----AAMCGMKIVS 706 (985)
Q Consensus 633 ~~~el~-~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~-----~~~~G~~v~~ 706 (985)
.++++. +++++++|.+.+.+++++|++++++++.+++ .++++|++++..|+.+... ....+++++.
T Consensus 91 ~~e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~~~~--------~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~ 162 (447)
T 3h7f_A 91 VVENLARDRAKALFGAEFANVQPHSGAQANAAVLHALM--------SPGERLLGLDLANGGHLTHGMRLNFSGKLYENGF 162 (447)
T ss_dssp HHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------CTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEE
T ss_pred HHHHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHHhc--------CCCCEEEecCcccccccchhhhhhhcCCeeEEEE
Confidence 345555 8999999999876668889887765555432 4678999998877663211 2224567777
Q ss_pred EeCC-CCCCCCHHHHHHHHHhcCCCeEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEcccccccc--C-CCCCCcC
Q 001990 707 VGTD-AKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV--G-LTSPGYI 782 (985)
Q Consensus 707 v~~~-~~g~iDle~L~~~i~~~~~~t~~Vvi~~pn~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~--g-~~~~g~~ 782 (985)
++++ +++.+|+++|++++++ .++++|++++|++ +... |+++|+++|+++|+++|+|++|..++. + ...+. .
T Consensus 163 ~~~~~~~~~~d~~~l~~~i~~--~~~~~i~~~~~~~-~~~~-~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~-~ 237 (447)
T 3h7f_A 163 YGVDPATHLIDMDAVRATALE--FRPKVIIAGWSAY-PRVL-DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV-P 237 (447)
T ss_dssp ECCCTTTCSCCHHHHHHHHHH--HCCSEEEEECSSC-CSCC-CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-T
T ss_pred cCcCcccCCcCHHHHHHHHHh--cCCeEEEEcCCCC-CCcc-CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC-C
Confidence 7776 4578999999999964 3566788877754 2222 799999999999999999999854431 1 11121 3
Q ss_pred CCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHH
Q 001990 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 783 g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~ 862 (985)
++|++++++||+| +||.+|++++++++.+.+....... ..++++ ... ++++.+.+..
T Consensus 238 ~~di~~~s~sK~l------~G~~gG~i~~~~~~~~~l~~~~~~~---------~~~~~~-------~~~-~~a~~~a~~~ 294 (447)
T 3h7f_A 238 HADVVSTTVHKTL------GGGRSGLIVGKQQYAKAINSAVFPG---------QQGGPL-------MHV-IAGKAVALKI 294 (447)
T ss_dssp TCSEEEEESSGGG------CCCSCEEEEECGGGHHHHHHHHTTT---------TCSSCC-------HHH-HHHHHHHHHH
T ss_pred CCcEEEecCCcCC------CCCCeEEEEECHHHHHHHhhhcCCc---------ccCCcc-------HHH-HHHHHHHHHH
Confidence 5799999999998 4687799999887655432110000 001111 111 1222233444
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHhcc------CCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccC-
Q 001990 863 MGSKGLTEASKIAILNANYMAKRLEKH------YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP- 935 (985)
Q Consensus 863 lg~~gl~~~~~~~~~~a~~l~~~L~~~------~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~- 935 (985)
+..+++.+..++..++++++.+.|++. +.+...+. . .+.+.++++. .+.+...+.+.|.++||.+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~-~--~~~~~~~~~~----~~~~~~~~~~~l~~~GI~v~~ 367 (447)
T 3h7f_A 295 AATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGT-D--VHLVLVDLRD----SPLDGQAAEDLLHEVGITVNR 367 (447)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSC-S--SSEEEEECTT----SSCCHHHHHHHHHHTTEECBC
T ss_pred hhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCC-C--CCEEEEEcCC----CCCCHHHHHHHHHHCCeEEec
Confidence 444567777788889999999999763 44322111 1 2235566642 24577788888888899875
Q ss_pred ---CC--CCC-CCCEEEEeccCC----CCHHhhchHHHHHHHHHHHHHH
Q 001990 936 ---TM--SWP-VPGTLMIEPTES----ESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 936 ---~~--~~p-v~~~lris~t~~----~t~eeId~~~~~i~aL~~i~~~ 974 (985)
.. ..| .++.+|+++... .+++|++ +++++|.+++.+
T Consensus 368 ~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~---~~~~~l~~~l~~ 413 (447)
T 3h7f_A 368 NAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFT---EVADIIATALAT 413 (447)
T ss_dssp -------------CEEEEECHHHHHHTCCHHHHH---HHHHHHHHHHHS
T ss_pred ccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHH---HHHHHHHHHHhc
Confidence 22 122 357899987654 6799999 999999887753
No 144
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.80 E-value=1.5e-17 Score=195.66 Aligned_cols=303 Identities=16% Similarity=0.186 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHHhCCCc-cceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCCCcHHHHHhcCc-------
Q 001990 632 EMFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------- 702 (985)
Q Consensus 632 ~~~~el~~~la~l~G~~~-~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv-~~~~Hg~~~~~~~~~G~------- 702 (985)
+...+++++++++++.+. ..++.+||++++++++.+++.|...+|..++++||+ ...+||.........|.
T Consensus 99 ~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~ 178 (472)
T 3hmu_A 99 VPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQS 178 (472)
T ss_dssp HHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhcccc
Confidence 346688899999987644 347789999999999999888876666545677776 55788877655443331
Q ss_pred ----EEEEEeCCC-----CCCCC--------HHHHHHHHHhcC-CCeEEEEEEcC-CCccccccC----HHHHHHHHHHc
Q 001990 703 ----KIVSVGTDA-----KGNIN--------IEELRKAAEANR-DNLSTLMVTYP-STHGVYEEG----IDEICKIIHDN 759 (985)
Q Consensus 703 ----~v~~v~~~~-----~g~iD--------le~L~~~i~~~~-~~t~~Vvi~~p-n~~G~i~~d----i~eI~~la~~~ 759 (985)
.+..++... ++ .| +++|++++++.. +++++|+++.+ +..|.+. + +++|+++|+++
T Consensus 179 ~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~-~~~~~l~~l~~l~~~~ 256 (472)
T 3hmu_A 179 GLIPDVHHINQPNWWAEGGD-MDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIV-APDSYWPEIQRICDKY 256 (472)
T ss_dssp CCCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBC-CCTTHHHHHHHHHHHT
T ss_pred CCCCCcEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCccc-CCHHHHHHHHHHHHHc
Confidence 244555321 11 34 889999997543 45677766554 3567775 4 99999999999
Q ss_pred CCEEEEEccccccccCCCCCCc--------CCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCC
Q 001990 760 GGQVYMDGANMNAQVGLTSPGY--------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIP 831 (985)
Q Consensus 760 g~lliVD~a~~~~~~g~~~~g~--------~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~ 831 (985)
|++||+|++|. ++.+.|. ..+|+++++ |++ ++||.++|++++++++++.+....+.
T Consensus 257 gillI~DEv~~----gfgr~G~~~a~~~~~v~pdi~t~s--K~l----~gg~~plG~v~~~~~i~~~~~~~~~~------ 320 (472)
T 3hmu_A 257 DILLIADEVIC----GFGRTGNWFGTQTMGIRPHIMTIA--KGL----SSGYAPIGGSIVCDEVAHVIGKDEFN------ 320 (472)
T ss_dssp TCEEEEECTTT----TTTTTSSSCHHHHHTCCCSEEEEC--GGG----TTTSSCCEEEEEEHHHHHHHTTSCBC------
T ss_pred CCEEEEEcccc----CCcccCccchhHHhCCCCceeeec--hhh----hcCCcceEEEEECHHHHHhcccCCcc------
Confidence 99999999874 2323332 236888764 876 34557889999998877655211100
Q ss_pred CCCCCCCCCCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHH-HHHHHHHHHHhcc--CCee--EcCCCCceeEEEE
Q 001990 832 APEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAI-LNANYMAKRLEKH--YPIL--FRGVNGTVAHEFI 906 (985)
Q Consensus 832 ~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~-~~a~~l~~~L~~~--~~i~--~~g~~~~~~~~~v 906 (985)
+ + . ++.+++..++++.+.|..+.++++ .++.. ++.+++++.|++. +..+ ..+. +.+ +.
T Consensus 321 -~----~-~----t~~~np~a~aAa~aaL~~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~-G~~---~~ 383 (472)
T 3hmu_A 321 -H----G-Y----TYSGHPVAAAVALENLRILEEENI---LDHVRNVAAPYLKEKWEALTDHPLVGEAKIV-GMM---AS 383 (472)
T ss_dssp -C----C-C----TTTTCHHHHHHHHHHHHHHHHTTH---HHHHHHTHHHHHHHHHHGGGGSTTEEEEEEE-TTE---EE
T ss_pred -c----c-C----CCCCCHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHhcCCCeEEEEec-Cce---EE
Confidence 0 0 0 112244555666677776655443 34555 6777888888652 2211 1111 111 23
Q ss_pred EEecCcccc-C------CCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHH
Q 001990 907 VDLRGLKNT-A------GIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 907 v~~~~~~~~-~------g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
+.+..-... . .....++.+.|.++||.+... .+.|||+|+..+|++|+| +++++|+++++++.
T Consensus 384 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----g~~iRi~p~~~~t~e~i~---~~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 384 IALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHV----GDRMIISPPLVITPAEID---EMFVRIRKSLDEAQ 453 (472)
T ss_dssp EEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEE----TTEEEECCCTTCCHHHHH---HHHHHHHHHHHHHH
T ss_pred EEEecCccccccccchhHHHHHHHHHHHHHCCcEEEec----CCEEEEECCCCCCHHHHH---HHHHHHHHHHHHHH
Confidence 333210000 0 001567889999999987533 279999999999999999 99999999887653
No 145
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.80 E-value=2.7e-18 Score=195.62 Aligned_cols=297 Identities=10% Similarity=0.045 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHHHhC--CCccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEe
Q 001990 632 EMFNNLGEWLCTITG--FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 632 ~~~~el~~~la~l~G--~~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~ 708 (985)
++.+++++++++.+| .+... +++++|++++..++.++. .++++|+++.+.|..+...++..|.+++.+|
T Consensus 63 ~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~l~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~ 134 (383)
T 3kax_A 63 NIGDIICNWTKKQYNWDIQKEWIVFSAGIVPALSTSIQAFT--------KENESVLVQPPIYPPFFEMVTTNNRQLCVSP 134 (383)
T ss_dssp THHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHC--------CTTCEEEECSSCCHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhC--------CCCCEEEEcCCCcHHHHHHHHHcCCEEEecc
Confidence 456788899999998 44443 555666666544433321 4678999999877766666788999999999
Q ss_pred CCCC---CCCCHHHHHHHHHhcCCCeEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEcccccccc-C--CCCC
Q 001990 709 TDAK---GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQV-G--LTSP 779 (985)
Q Consensus 709 ~~~~---g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~--di~eI~~la~~~g~lliVD~a~~~~~~-g--~~~~ 779 (985)
.+.+ +.+|+++|+++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++|+|++|..... + ....
T Consensus 135 ~~~~~~~~~~d~~~l~~~l~---~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~ 211 (383)
T 3kax_A 135 LQKQNDTYAIDFEHLEKQFQ---QGVKLMLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPF 211 (383)
T ss_dssp CEEETTEEECCHHHHHHHHT---TTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCG
T ss_pred ceecCCcEEEcHHHHHHHhC---cCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeH
Confidence 8643 3489999999996 78999999999 57999861 477788889999999999999853111 1 0111
Q ss_pred CcC-----CCcEEEeCCcccccccCCCCCCcceeeee-cccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHH
Q 001990 780 GYI-----GADVCHLNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 780 g~~-----g~Di~~~s~hKtl~~p~g~GGPg~G~l~~-~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~ 853 (985)
..+ +.++++.|+||+|+. +|.++|++++ ++++.+.+...... .++.+. +....
T Consensus 212 ~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~~~~-----------~~~~~~------~~~~~ 270 (383)
T 3kax_A 212 ASLSEELAARTITCMAPSKTFNI----AGLQASIIIIPNEKLRQAFTSIQYR-----------QGFHGL------NIFAY 270 (383)
T ss_dssp GGSCHHHHTTEEEEECSHHHHTC----GGGCCEEEECCCHHHHHHHHHHHHH-----------TTCCCC------CHHHH
T ss_pred hhcCccccCcEEEEEEChhhccC----cchhheEEEeCCHHHHHHHHHHHhh-----------cccCCC------CHHHH
Confidence 111 345888999999953 3667899988 45655443211000 001111 11122
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHH-HCC
Q 001990 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYG 931 (985)
Q Consensus 854 ~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~-e~G 931 (985)
.++.+.+.. +.+.+.+..++..++++++.+.|++ ...+....+.+... +.++++. .+.+..++.+.|. ++|
T Consensus 271 ~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~l~~~~g 343 (383)
T 3kax_A 271 TAMQSAYTE-CNDWLNEIRFYIEDNAKFACEYIKDHIPTLSVMKPEGSFL--LWIDCSA----LNLSQDERTKLLEEKGK 343 (383)
T ss_dssp HHHHHHTTT-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCSBSSE--EEEECGG----GCCCHHHHHHHHHHTSC
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCceEE--EEEEccc----cCCCHHHHHHHHHhhCC
Confidence 222233322 3344566667778888999999986 22332222222221 2355541 2467889999997 689
Q ss_pred CccCCCC-C--CCCCEEEEeccCCCCHHhhchHHHHHHHHHHHH
Q 001990 932 FHGPTMS-W--PVPGTLMIEPTESESKVCHNREDLFFQILLSLT 972 (985)
Q Consensus 932 i~~~~~~-~--pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~ 972 (985)
|.+.... + +..+.+|++++ ++++|++ ++++.|++++
T Consensus 344 i~v~~g~~~~~~~~~~iRi~~~--~~~~~i~---~~l~~l~~~l 382 (383)
T 3kax_A 344 IIVEPGEKYGLGGEEHIGINIG--CPRSVLE---EILNRLRHTF 382 (383)
T ss_dssp EECEESGGGCTTCTTEEEEECS--SCHHHHH---HHHHHHHHHH
T ss_pred EEeECchhhcCCCCCeEEEEEc--CCHHHHH---HHHHHHHHHh
Confidence 9875321 2 22488999987 5899999 9999988764
No 146
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.80 E-value=1e-17 Score=195.38 Aligned_cols=290 Identities=13% Similarity=0.150 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHH-hcCCCC-CCEEEEcC-CCCCCcHHHHHhcC---------
Q 001990 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHK-ARGDHH-RNVCIIPV-SAHGTNPATAAMCG--------- 701 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~-~~g~~~-~~~Vlv~~-~~Hg~~~~~~~~~G--------- 701 (985)
..++++++++++|.+. .+++++|++++++++.+++.|.. .+|..+ +++||+.+ .+|+.....+...|
T Consensus 120 ~~~l~~~la~~~g~~~-v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~ 198 (439)
T 2oat_A 120 LGEYEEYITKLFNYHK-VLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFG 198 (439)
T ss_dssp HHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSC
T ss_pred HHHHHHHHHHhcCCCE-EEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCC
Confidence 5578889999998654 46778899988888777765532 222222 36787755 67887766655444
Q ss_pred ---cEEEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccc---cCHHHHHHHHHHcCCEEEEEcccccccc
Q 001990 702 ---MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE---EGIDEICKIIHDNGGQVYMDGANMNAQV 774 (985)
Q Consensus 702 ---~~v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~---~di~eI~~la~~~g~lliVD~a~~~~~~ 774 (985)
.+++.+|.+ |+++|+++++ ++++++|+++.. +.+|.+. .++++|+++|++||+++|+|++|. +++
T Consensus 199 p~~~~v~~~~~~-----d~~~le~~l~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-g~g 270 (439)
T 2oat_A 199 PFMPGFDIIPYN-----DLPALERALQ--DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQT-GLA 270 (439)
T ss_dssp SCCTTEEEECSS-----CHHHHHHHTT--STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTT
T ss_pred CCCCCeEEeCCC-----CHHHHHHHhC--CCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCc
Confidence 456777763 8999999995 267877776533 3578654 269999999999999999999983 332
Q ss_pred CCCCC---Cc--CCCcEEEeCCcccccccCCCCC-CcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccch
Q 001990 775 GLTSP---GY--IGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 775 g~~~~---g~--~g~Di~~~s~hKtl~~p~g~GG-Pg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g 848 (985)
-.... .. ..+|++++ +|+|+ || ..+|++++++++.+.+..... .. ... +
T Consensus 271 ~~g~~~~~~~~~~~~Di~t~--sK~l~-----~G~~~~G~v~~~~~~~~~l~~~~~------------~~--t~~----~ 325 (439)
T 2oat_A 271 RTGRWLAVDYENVRPDIVLL--GKALS-----GGLYPVSAVLCDDDIMLTIKPGEH------------GS--TYG----G 325 (439)
T ss_dssp TTSSSSGGGGGTCCCSEEEE--CGGGG-----TTSSCCEEEEECHHHHTTSCTTSS------------CC--SST----T
T ss_pred cCCcchhHHHhCCCCcEEEe--ccccc-----CCCCCeEEEEECHHHHhccCCCCc------------cc--CCC----c
Confidence 11111 11 24688754 58874 34 568999999887766532110 01 111 2
Q ss_pred hhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCee--EcCCCCceeEEEEEEecCccccCCCCHHHHHH
Q 001990 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAK 925 (985)
Q Consensus 849 ~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~--~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~ 925 (985)
++..++++.+.+..+..++ ..++..+++++++++|++ ++++. ..+ .+. .+.+.+.. ..+.+..++.+
T Consensus 326 ~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~~-~g~---~~~v~l~~---~~~~~~~~l~~ 395 (439)
T 2oat_A 326 NPLGCRVAIAALEVLEEEN---LAENADKLGIILRNELMKLPSDVVTAVRG-KGL---LNAIVIKE---TKDWDAWKVCL 395 (439)
T ss_dssp CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHTTSCTTTEEEEEE-ETT---EEEEEECC---CSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHhcCCCcEEEEe-eee---EEEEEEec---CccHHHHHHHH
Confidence 3344455566666665443 345667788999999987 34332 111 112 23344431 00135788999
Q ss_pred HHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHH
Q 001990 926 RLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 926 ~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
.|.++||.+.... ++.+|++++..+|++|+| +++++|+++++
T Consensus 396 ~l~~~Gv~v~~~~---~~~iRi~~~~~~t~e~i~---~~l~~l~~~l~ 437 (439)
T 2oat_A 396 RLRDNGLLAKPTH---GDIIRFAPPLVIKEDELR---ESIEIINKTIL 437 (439)
T ss_dssp HHHHTTEECCBSS---SSEEEECCCTTCCHHHHH---HHHHHHHHHHH
T ss_pred HHHHCCeEEecCC---CCEEEEECccCCCHHHHH---HHHHHHHHHHH
Confidence 9999999985422 478999999999999999 99999998765
No 147
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.79 E-value=1.4e-17 Score=190.74 Aligned_cols=313 Identities=14% Similarity=0.111 Sum_probs=213.1
Q ss_pred CCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHHHHHHHHHhhCCCCc-ceeeccchHHHHHHHHHHhhhhcCCCC
Q 001990 178 THVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMS-NASLLDEGTAAAEAMAMCNNIQKGKKK 256 (985)
Q Consensus 178 ~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g~~~~-~~sl~~~~ta~~ea~~~a~~~~~~~g~ 256 (985)
...|+.+.+++.+.. .. .|.+. ..+...++++.+++++|.++. ++.+++|+|.++++++.++. . +||
T Consensus 43 ~~~~~~v~~a~~~~~---~~--~~~~~----~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~-~--~gd 110 (393)
T 1vjo_A 43 SNAHPSVLQAMNVSP---VG--HLDPA----FLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAV-E--PGD 110 (393)
T ss_dssp CCCCHHHHHHHSSCC---CC--TTSHH----HHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHC-C--TTC
T ss_pred CCCCHHHHHHHhccc---cc--ccCHH----HHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhcc-C--CCC
Confidence 346677765554322 11 23222 345667788999999999877 78899999999888777652 3 789
Q ss_pred EEEEcCCCChh--HHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHH
Q 001990 257 TFIIASNCHPQ--TIDICITRADGFDIKVVVSDL--------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAH 323 (985)
Q Consensus 257 ~Vlv~~~~h~s--~~~~~~~~a~~~gi~v~~~~~--------~~l~~-l~~-~t~~V~v~~p-n~~G~i~dl~~I~~~a~ 323 (985)
+|++++..|++ +...++ ..|++++.++. ++|++ +++ ++++|++++| |++|.+.|+++|.++|+
T Consensus 111 ~Vl~~~~~~~~~~~~~~~~----~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~ 186 (393)
T 1vjo_A 111 VVLIGVAGYFGNRLVDMAG----RYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCR 186 (393)
T ss_dssp EEEEEESSHHHHHHHHHHH----HTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHH
T ss_pred EEEEEcCChhHHHHHHHHH----HcCCceEEEecCCCCCCCHHHHHHHHhhCCceEEEEeccCCCcceeccHHHHHHHHH
Confidence 99999999988 555543 45777777653 45655 656 7899999988 78999999999999999
Q ss_pred hCCcEEEEEeccccccCCC-CCCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCc---eeeeeecCCCCc
Q 001990 324 ANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGR---IVGVSIDSSGKP 398 (985)
Q Consensus 324 ~~galliV~a~~~alg~l~-~p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~---~vG~s~d~~g~~ 398 (985)
++|+++++| +..++|... ....+++|++++|. |+|++| +++|++++++++++.+..+ +.+
T Consensus 187 ~~~~~li~D-ea~~~g~~~~~~~~~~~di~~~s~sK~l~~~-----~~~G~l~~~~~~~~~~~~~~~~~~~--------- 251 (393)
T 1vjo_A 187 EFGTLLLVD-TVTSLGGVPIFLDAWGVDLAYSCSQKGLGCS-----PGASPFTMSSRAIEKLQRRRTKVAN--------- 251 (393)
T ss_dssp HHTCEEEEE-CTTTTTTSCCCTTTTTCSEEECCSSSTTCSC-----SSCEEEEECHHHHHHHHTCSSCCSC---------
T ss_pred HcCCEEEEE-CCccccCcCCcccccCccEEEEcCcccccCC-----CceEEEEECHHHHHHHhccCCCCCc---------
Confidence 999999995 344555332 23567899999998 778643 2579999999887665111 101
Q ss_pred ceEEeccccc---ccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCC--
Q 001990 399 ALRVAMQTRE---QHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-- 473 (985)
Q Consensus 399 ~~~l~l~tre---~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-- 473 (985)
+.+.+..+. .+.++..+|.|. ....++.+++ ..+..+|++++.++..++.+++.+.|+++| +++..+.
T Consensus 252 -~~~~~~~~~~~~~~~~~~~g~~~~---~~~~a~~~al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~ 324 (393)
T 1vjo_A 252 -WYLDMNLLGKYWGSERVYHHTAPI---NLYYALREAL--RLIAQEGLANCWQRHQKNVEYLWERLEDIG-LSLHVEKEY 324 (393)
T ss_dssp -STTCHHHHHHHHSTTCCCCSCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCBSSCGGG
T ss_pred -eecCcHhhhhhhccCCCCCCCCCH---HHHHHHHHHH--HHHHHccHHHHHHHHHHHHHHHHHHHHHcC-CcccCCccc
Confidence 100000000 011122223333 2233333333 444455789999999999999999999886 8776432
Q ss_pred -CcceEEEecC-C--HHHHHHHHHHc-Cceeeee----cCCeEEEEec-cCCCHHHHHHHHHHHh
Q 001990 474 -FFDTVKVKCA-D--AHAIASAAYKI-EMNLRVV----DSNTVTASFD-ETTTLEDVDKLFIVFA 528 (985)
Q Consensus 474 -~~~~~~i~~~-~--~~~l~~~L~~~-Gi~~~~~----~~~~lris~~-~~~t~edid~ll~~l~ 528 (985)
..+.+.+..+ + ..++.++|.++ ||.+... .++.+|+++. ..++++++++++++|.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~ 389 (393)
T 1vjo_A 325 RLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALE 389 (393)
T ss_dssp BCSSEEEEECCTTCCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHH
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHH
Confidence 1234556654 2 78899999987 9988642 2588999965 4567778999999986
No 148
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.79 E-value=3e-18 Score=198.13 Aligned_cols=294 Identities=15% Similarity=0.152 Sum_probs=185.2
Q ss_pred HHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCc---HHHHHhcCc--EEEEEeCCC
Q 001990 637 LGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN---PATAAMCGM--KIVSVGTDA 711 (985)
Q Consensus 637 l~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~---~~~~~~~G~--~v~~v~~~~ 711 (985)
.++++++++|.+...+++++|+++++.++.++. .++++|+++...|+.+ .......|. +++.++.++
T Consensus 83 a~~~~~~~~~~~~~~v~~~~Gs~a~~~al~~~~--------~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 154 (425)
T 3ecd_A 83 AIERVKRLFNAGHANVQPHSGAQANGAVMLALA--------KPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSR 154 (425)
T ss_dssp HHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHC--------CTTCEEEEECC------------------CEEEEECCCT
T ss_pred HHHHHHHHhCCCCceeecCchHHHHHHHHHHcc--------CCCCEEEEcccccccceecchhhhhcccceeeeecCCCc
Confidence 347899999998876668888887755544331 4778999998877652 222223444 666676653
Q ss_pred -CCCCCHHHHHHHHHhcCCCeEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-CCCc-CCCcEEE
Q 001990 712 -KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-SPGY-IGADVCH 788 (985)
Q Consensus 712 -~g~iDle~L~~~i~~~~~~t~~Vvi~~pn~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~-~~g~-~g~Di~~ 788 (985)
++.+|+++|++++++ +++++|++++|++ |... ++++|+++|+++|+++|+|++|..+..... .+.. ..+|+++
T Consensus 155 ~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~-~~~~-~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~ 230 (425)
T 3ecd_A 155 DTMLIDYDQVEALAQQ--HKPSLIIAGFSAY-PRKL-DFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVT 230 (425)
T ss_dssp TTSSCCHHHHHHHHHH--HCCSEEEEECSCC-CSCC-CHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEE
T ss_pred ccCccCHHHHHHHHhh--cCCcEEEEccccC-CCcC-CHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhcCcEEE
Confidence 378999999999973 4678899987765 6766 899999999999999999999754432111 1111 1379999
Q ss_pred eCCcccccccCCCCCCcceeeeecc-cccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhchhh
Q 001990 789 LNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 789 ~s~hKtl~~p~g~GGPg~G~l~~~~-~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~g 867 (985)
+|+||+| +||++|++++++ .+.+.+....... ..++++ .... .++.+.+.....++
T Consensus 231 ~s~sK~l------~g~~~g~~~~~~~~~~~~~~~~~~~~---------~~~~~~-------~~~~-~a~~~a~~~~~~~~ 287 (425)
T 3ecd_A 231 STTHKTL------RGPRGGFVLTNDEEIAKKINSAVFPG---------LQGGPL-------MHVI-AGKAVAFGEALTDD 287 (425)
T ss_dssp EESSGGG------CCCSCEEEEESCHHHHHHHHHHHC--------------CCC-------HHHH-HHHHHHHHHHTSHH
T ss_pred ecCCccc------CCCCcEEEEeCCHHHHHHHHhhhCcc---------ccCCcc-------HHHH-HHHHHHHHHHHHHh
Confidence 9999998 357779998884 4443322110000 000011 1111 12223333344456
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC------
Q 001990 868 LTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP------ 940 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~p------ 940 (985)
+.+..++..++++++.+.|.+ ++.+..++. . .+.+.+.+.. .+.+...+.+.|.++||.+.....|
T Consensus 288 ~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~-~--~~~~~~~~~~----~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~ 360 (425)
T 3ecd_A 288 FKTYIDRVLANAQALGDVLKAGGVDLVTGGT-D--NHLLLVDLRP----KGLKGAQVEQALERAGITCNKNGIPFDPEKP 360 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEGGGSC-S--SSEEEEECGG----GTCCHHHHHHHHHHTTEECEECCCTTCSSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeeccCCC-C--ceEEEEEeCC----CCCCHHHHHHHHHHcCCEecccccCCCCCCC
Confidence 777778888899999999987 554432111 1 2234455531 2457788999999999987522212
Q ss_pred -CCCEEEEeccCC----CCHHhhchHHHHHHHHHHHHHHH
Q 001990 941 -VPGTLMIEPTES----ESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 941 -v~~~lris~t~~----~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
.++.+|++++.. .+++|++ +++++|++++++.
T Consensus 361 ~~~~~iRi~~~~~~~~~~~~e~i~---~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 361 TITSGIRLGTPAGTTRGFGAAEFR---EVGRLILEVFEAL 397 (425)
T ss_dssp TTCSEEEEESHHHHHTTCCHHHHH---HHHHHHHHHHHHH
T ss_pred CCccceeccchhheeccCCHHHHH---HHHHHHHHHHhcc
Confidence 235899995544 4599999 9999999988765
No 149
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.79 E-value=3e-18 Score=198.05 Aligned_cols=302 Identities=11% Similarity=0.081 Sum_probs=189.3
Q ss_pred HHHHHHHHHhC------------CCccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCc
Q 001990 636 NLGEWLCTITG------------FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGM 702 (985)
Q Consensus 636 el~~~la~l~G------------~~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~ 702 (985)
++++.++++++ .+... +++++|++++..++. .+. .++++|+++.+.|..+...++..|+
T Consensus 79 ~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~---~l~-----~~gd~vl~~~p~y~~~~~~~~~~g~ 150 (416)
T 1bw0_A 79 EAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAIT---AIC-----DAGDYALVPQPGFPHYETVCKAYGI 150 (416)
T ss_dssp HHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHH---HHC-----CTTCEEEEEESCCTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHH---HhC-----CCCCEEEEcCCCcHhHHHHHHHcCc
Confidence 45556666655 44433 455555655543333 321 3678999988877777777788999
Q ss_pred EEEEEeCCCC--CCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccc-cC
Q 001990 703 KIVSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQ-VG 775 (985)
Q Consensus 703 ~v~~v~~~~~--g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~d---i~eI~~la~~~g~lliVD~a~~~~~-~g 775 (985)
+++.+|.+++ +.+|+++|+++++ +++++|++++| |++|.+. + +++|+++|+++|+++|+|+++.... .+
T Consensus 151 ~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g 226 (416)
T 1bw0_A 151 GMHFYNCRPENDWEADLDEIRRLKD---DKTKLLIVTNPSNPCGSNF-SRKHVEDIVRLAEELRLPLFSDEIYAGMVFKG 226 (416)
T ss_dssp EEEEEEEEGGGTTEECHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTTCBCCS
T ss_pred EEEEeecCcccCCCCCHHHHHHHhc---cCCeEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCCEEEEEccccccccCC
Confidence 9999998653 5689999999997 67899999999 4799987 5 9999999999999999999985311 11
Q ss_pred ------CCCCCcC---CCcEEEeCCcccccccCCCCCCcceeeeeccc--ccCcCCCCccccCCCCCCCCCCCCCCCccc
Q 001990 776 ------LTSPGYI---GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--LAPFLPSHPVVSTGGIPAPEKSQPLGTIAA 844 (985)
Q Consensus 776 ------~~~~g~~---g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~--l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s 844 (985)
+.....+ +.++++.|++|+|+. .|.++|+++++++ +.+.+...... ....+.+ .
T Consensus 227 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~----~Glr~G~~~~~~~~~~~~~~~~~~~~---------~~~~~~~--~ 291 (416)
T 1bw0_A 227 KDPNATFTSVADFETTVPRVILGGTAKNLVV----PGWRLGWLLYVDPHGNGPSFLEGLKR---------VGMLVCG--P 291 (416)
T ss_dssp SCTTCCCCCTTSSCCSCCEEEEEESTTTTSC----GGGCCEEEEEECTTCSCHHHHHHHHH---------HHHHHTC--S
T ss_pred CCCCCCccCHHHccCCCcEEEEecchhhCCC----CCceEEEEEeeCchhhHHHHHHHHHH---------HhccccC--C
Confidence 1111111 224677889999853 3567899998763 43322100000 0000001 1
Q ss_pred ccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHH
Q 001990 845 APWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVA 924 (985)
Q Consensus 845 ~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~ 924 (985)
+.....++.+++.....+++.+..++..++++++.+.|++...+....+.+..+ +.+.++......+.+..++.
T Consensus 292 ----~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 365 (416)
T 1bw0_A 292 ----CTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMY--LMSRIDLEKYRDIKTDVEFF 365 (416)
T ss_dssp ----CHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTE--EEEEECGGGBSSCCSHHHHH
T ss_pred ----CcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEE--EEEeCCHHHcCCCCCHHHHH
Confidence 112222333444433456677777778888999999998632333322222222 23444210000124677888
Q ss_pred HHHH-HCCCccCCCC-CCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 925 KRLM-DYGFHGPTMS-WPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 925 ~~L~-e~Gi~~~~~~-~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
+.|. ++||.+.... +..++.+|++++ +++++++ ++++.|.+++++.
T Consensus 366 ~~l~~~~gi~v~~g~~f~~~~~iRis~~--~~~e~l~---~~l~~l~~~l~~~ 413 (416)
T 1bw0_A 366 EKLLEEENVQVLPGTIFHAPGFTRLTTT--RPVEVYR---EAVERIKAFCQRH 413 (416)
T ss_dssp HHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHCCEEEecccccCCCCeEEEEec--CCHHHHH---HHHHHHHHHHHHh
Confidence 8884 8899874322 223578999995 6899999 9999999887654
No 150
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.79 E-value=3.8e-18 Score=194.22 Aligned_cols=325 Identities=9% Similarity=-0.023 Sum_probs=203.5
Q ss_pred ccccccceecccCccccccccccccccccCCCCcchhhhcHHHHHHHHHHHHHHHhCC--Cccc-eecChHHHHHHHHHH
Q 001990 590 SMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGF--DSFS-LQPNAGAAGEYAGLM 666 (985)
Q Consensus 590 ~~~~lGs~~~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~el~~~la~l~G~--~~~~-~~~~sGa~g~~a~l~ 666 (985)
.++.|+++.+.++................+.|.+ .+|..++.+++.+++++.+|. +... +++++|++++..++.
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~---~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~ 100 (376)
T 3ezs_A 24 RGLDLGIGEPQFETPKFIQDALKNHTHSLNIYPK---SAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPS 100 (376)
T ss_dssp CCCBCSSCCCCSCCCHHHHHHHHTTGGGGGSCCC---TTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHH
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHhhhhcCCCCC---CCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHH
Confidence 4567777666555432222211111111222222 246566777777788777887 4443 555666666544433
Q ss_pred HHHHHHHhcCCCC--CCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCcc
Q 001990 667 VIRAYHKARGDHH--RNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHG 743 (985)
Q Consensus 667 air~~~~~~g~~~--~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G 743 (985)
++. .+ +++|+++.+.|..+...++..|.+++.+|.++++.+++ +++++++ +++++|++++| |++|
T Consensus 101 ~~~--------~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~l~~~~~---~~~~~v~~~~p~nptG 168 (376)
T 3ezs_A 101 FVL--------FDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDFTP-SLNEKEL---QEVDLVILNSPNNPTG 168 (376)
T ss_dssp HHT--------TTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTSCC-CCCHHHH---HHCSEEEECSSCTTTC
T ss_pred HHc--------CCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCCCcch-hHHhhhc---cCCCEEEEcCCCCCcC
Confidence 321 35 78999998888777777888999999999987655666 7778887 57888999998 4689
Q ss_pred cccc--CHHHHHHHHHHcCCEEEEEccccccccCCCCCC-----------cCCCcEEEeCCcccccccCCCCCCcceeee
Q 001990 744 VYEE--GIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG-----------YIGADVCHLNLHKTFCIPHGGGGPGMGPIG 810 (985)
Q Consensus 744 ~i~~--di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g-----------~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~ 810 (985)
.+.+ ++++|+++|+++|+++|+|++|......-.... ..+.++++.|+||+|+. .|.++|+++
T Consensus 169 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~----~G~r~G~~~ 244 (376)
T 3ezs_A 169 RTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSA----PGLRSGFIA 244 (376)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTC----GGGCCEEEE
T ss_pred CCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCC----ccceeEEEe
Confidence 8861 488888889999999999999853211100110 34667889999999853 467899999
Q ss_pred ecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhccC
Q 001990 811 VKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHY 890 (985)
Q Consensus 811 ~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~~ 890 (985)
+++++.+.+.... ...+.+. +.....++.+.+.. .+.+.+..++..++.+++.+.|+ ++
T Consensus 245 ~~~~~~~~~~~~~------------~~~~~~~------~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~-~~ 303 (376)
T 3ezs_A 245 GDSRLLEKYKAFR------------AYLGYTS------ANAIQKASEAAWLD--DRHAEFFRNIYANNLKLARKIFK-NT 303 (376)
T ss_dssp ECHHHHHHHHHHH------------TTTCCCC------CHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHST-TC
T ss_pred eCHHHHHHHHHHH------------hhhcCCC------ChHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 8887765442100 0001111 11122222333332 23455666677777888888887 33
Q ss_pred CeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHH-CCCccCCCC-C----CCCCEEEEeccCCCCHHhhchHHHH
Q 001990 891 PILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD-YGFHGPTMS-W----PVPGTLMIEPTESESKVCHNREDLF 964 (985)
Q Consensus 891 ~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e-~Gi~~~~~~-~----pv~~~lris~t~~~t~eeId~~~~~ 964 (985)
. . +.... .+.++++ +..++.+.|.+ +||.+.... + ..++.+|++++. |++|++ ++
T Consensus 304 ~--~--~~~~~--~~~~~~~--------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~--~~~~i~---~~ 364 (376)
T 3ezs_A 304 L--I--YPYSF--YVYLPVQ--------NGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY--DTPLLE---KP 364 (376)
T ss_dssp C--C--CSBSS--EEEEECS--------CHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS--CHHHHH---HH
T ss_pred C--C--CCcce--EEEEECC--------CHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC--CHHHHH---HH
Confidence 3 1 11112 1334432 57889999987 899874321 1 135889999873 999999 99
Q ss_pred HHHHHHHHH
Q 001990 965 FQILLSLTK 973 (985)
Q Consensus 965 i~aL~~i~~ 973 (985)
+++|+++++
T Consensus 365 l~~l~~~l~ 373 (376)
T 3ezs_A 365 LEIIETYRE 373 (376)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999988765
No 151
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.79 E-value=3.1e-18 Score=196.00 Aligned_cols=305 Identities=14% Similarity=0.080 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCCC-
Q 001990 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~~- 712 (985)
..++++.+++++|.+. .+++++|++++..++.+++ ..++++||++...|..+...++..|++++.++++++
T Consensus 40 ~~~l~~~la~~~~~~~-~i~~~sGt~al~~~l~~l~-------~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 111 (388)
T 1b9h_A 40 VNSFEREFAAHHGAAH-ALAVTNGTHALELALQVMG-------VGPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAAT 111 (388)
T ss_dssp HHHHHHHHHHHTTCSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHhCCCe-EEEeCCHHHHHHHHHHHcC-------CCCcCEEEECCCccHHHHHHHHHcCCEEEEEecCCCc
Confidence 5578999999999874 4666777766544433321 146789999999888777778889999999999864
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CCCCcCC-CcEEEeC
Q 001990 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TSPGYIG-ADVCHLN 790 (985)
Q Consensus 713 g~iDle~L~~~i~~~~~~t~~Vvi~~pn~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~-~~~g~~g-~Di~~~s 790 (985)
+.+|+++|+++++ +++++|+.. |.+|.+. |+++|+++|+++|+++|+|++|..+...- ...+.++ +++.+++
T Consensus 112 ~~~d~~~l~~~i~---~~~~~v~~~--n~tG~~~-~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~~i~~~S~s 185 (388)
T 1b9h_A 112 YNLDPEAVAAAVT---PRTKVIMPV--HMAGLMA-DMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQ 185 (388)
T ss_dssp CCBCHHHHHHHCC---TTEEEECCB--CGGGCCC-CHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSSSCEEEECC
T ss_pred CCCCHHHHHHhcC---cCceEEEEe--CCccCcC-CHHHHHHHHHHcCCEEEEecchhcCCccCCeecccccceEEEEcc
Confidence 7899999999997 788887722 5689998 89999999999999999999996543210 1123444 4555555
Q ss_pred CcccccccCCCCCCcceeeeeccc-c--cCcCCC-CccccCCCCCCCC-CCCCCCCcccccchhhhHHHHHHHHHHHhch
Q 001990 791 LHKTFCIPHGGGGPGMGPIGVKKH-L--APFLPS-HPVVSTGGIPAPE-KSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 791 ~hKtl~~p~g~GGPg~G~l~~~~~-l--~~~lpg-~~~g~~~~~~~~~-~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~ 865 (985)
.||++ +|+.+|+++++++ + .+.+.. ...+.......+. ...++.. .. +... +++.+.. .
T Consensus 186 ~~K~l------~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~----~~~~---~a~~~~~--~ 249 (388)
T 1b9h_A 186 NGKLM------TAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNM-RL----NEFS---ASVLRAQ--L 249 (388)
T ss_dssp TTSSS------CSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBC-BC----BHHH---HHHHHHH--H
T ss_pred CCCcc------cCCCeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccC-Cc----CHHH---HHHHHHH--H
Confidence 66776 3456788888865 4 332210 0011100000000 0011111 00 1111 1122222 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCC----CceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCC
Q 001990 866 KGLTEASKIAILNANYMAKRLEKHYPILFRGVN----GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPV 941 (985)
Q Consensus 866 ~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~----~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~pv 941 (985)
+.+.+..++..++++++.+.|++...+...++. ....+.+.+.++.. .+.+..++.+.|.++||.+.....|.
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~L~~~gI~v~~~~~~~ 326 (388)
T 1b9h_A 250 ARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGL---TEERRNALVDRLVEAGLPAFAAFRAI 326 (388)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTC---CHHHHHHHHHHHHHTTCCEEECCCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCc---CcccHHHHHHHHHHCCCCcccccCcc
Confidence 335555666677889999999863223222210 01123345665410 00146789999999999875332221
Q ss_pred ------------------------------CCEEEEeccCCC-CHHhhchHHHHHHHHHHHHHH
Q 001990 942 ------------------------------PGTLMIEPTESE-SKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 942 ------------------------------~~~lris~t~~~-t~eeId~~~~~i~aL~~i~~~ 974 (985)
.+.||++++..+ |++||| +++++|++++++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~---~~~~~l~~~~~~ 387 (388)
T 1b9h_A 327 YRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELH---ATAEIIADAVAR 387 (388)
T ss_dssp GGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHH---HHHHHHHHHHHH
T ss_pred ccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHH---HHHHHHHHHHhh
Confidence 135999999999 999999 999999988753
No 152
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.79 E-value=8.8e-19 Score=200.90 Aligned_cols=301 Identities=13% Similarity=0.085 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCC-C
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD-A 711 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~-~ 711 (985)
...++++.+++++|.+. .+++++|++++..++.++. ..++++|+++...|..+...+...|++++.++++ +
T Consensus 57 ~~~~l~~~la~~~~~~~-~i~~~~gt~al~~~l~~~~-------~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 128 (391)
T 3dr4_A 57 FIVEFEKAFADYCGVKH-AIACNNGTTALHLALVAMG-------IGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPR 128 (391)
T ss_dssp HHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHT-------CCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHhCCCc-EEEeCCHHHHHHHHHHHcC-------CCCcCEEEECCCchHHHHHHHHHCCCEEEEEecCcc
Confidence 36689999999999884 4667788876655544331 1467899999998887777788899999999998 4
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-CCCcCCCcEEEeC
Q 001990 712 KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-SPGYIGADVCHLN 790 (985)
Q Consensus 712 ~g~iDle~L~~~i~~~~~~t~~Vvi~~pn~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~-~~g~~g~Di~~~s 790 (985)
++.+|+++|+++++ +++++|+++ |++|.+. |+++|+++|+++|+++|+|++|..+..... ..+.+ .|+.+++
T Consensus 129 ~~~~d~~~l~~~~~---~~~~~v~~~--n~tG~~~-~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~-~di~~~S 201 (391)
T 3dr4_A 129 TFNLDAAKLEALIT---PRTKAIMPV--HLYGQIC-DMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSL-GDCATFS 201 (391)
T ss_dssp TCSBCGGGSGGGCC---TTEEEECCB--CGGGCCC-CHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SSEEEEE
T ss_pred ccCcCHHHHHHhcC---CCceEEEEE--CCCCChh-hHHHHHHHHHHcCCEEEEECcccccceECCeeeccc-CCEEEEE
Confidence 57899999999987 789888865 4679988 899999999999999999999864332111 11222 3666655
Q ss_pred --CcccccccCCCCCCcceeeeecc-cccCcCCCC-ccccCCCC-CCCCCCCCCCCcccccchhhhHHHHHHHHHHHhch
Q 001990 791 --LHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSH-PVVSTGGI-PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 791 --~hKtl~~p~g~GGPg~G~l~~~~-~l~~~lpg~-~~g~~~~~-~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~ 865 (985)
.||+|+ |+.+|++++++ .+.+.+... ..|...+. ... ...+ .+... .. +.++.. ....
T Consensus 202 ~s~~K~l~------~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~g-~~~~~----~~--l~aa~~---~~~~ 264 (391)
T 3dr4_A 202 FFGNAIIT------TGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWF-PIVG-FNYRM----TN--IQAAIG---LAQL 264 (391)
T ss_dssp CBTTSSSC------CBSCEEEEESCHHHHHHHHHHHBTTCCTTSTTCC-SSCC-CBCBC----CH--HHHHHH---HHHH
T ss_pred CCCCCcCC------cCCeEEEEECCHHHHHHHHHHHhcCCCCCCcccc-cccc-cccCC----CH--HHHHHH---HHHH
Confidence 668873 23467776664 343222100 00111000 000 0001 01110 11 112222 2223
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhc-cCCeeEc--CC-CCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCC-
Q 001990 866 KGLTEASKIAILNANYMAKRLEK-HYPILFR--GV-NGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWP- 940 (985)
Q Consensus 866 ~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~--g~-~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~p- 940 (985)
+++.+..++..++++++.+.|++ ++.+... .. .....+.+.+.++. ..+.+..++.+.|.++||.+.....|
T Consensus 265 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~l~~~L~~~GI~v~~~~~p~ 341 (391)
T 3dr4_A 265 ERVDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGE---GLSTTRDQVIKDLDALGIESRPVFHPM 341 (391)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHGGGTTSEECCCCCTTSCCCCSSEEEEECS---SCSSCHHHHHHHHHHTTCCCEECCCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCccccCcCCCCCCcceeEEEEEEECC---ccchhHHHHHHHHHHCCCceeecCCcc
Confidence 45666677778888999999987 4444322 11 01122223444431 12467889999999999987432111
Q ss_pred --------------------CCCEEEEeccCCCCHHhhchHHHHHHHHHHH
Q 001990 941 --------------------VPGTLMIEPTESESKVCHNREDLFFQILLSL 971 (985)
Q Consensus 941 --------------------v~~~lris~t~~~t~eeId~~~~~i~aL~~i 971 (985)
....+|++++..+|+|||| +++++|+++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~---~~~~~l~~~ 389 (391)
T 3dr4_A 342 HIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADID---RVIAALDQV 389 (391)
T ss_dssp GGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHH---HHHHHHHTT
T ss_pred ccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHH---HHHHHHHHH
Confidence 1257999999999999999 999999764
No 153
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.79 E-value=3e-18 Score=194.23 Aligned_cols=297 Identities=11% Similarity=0.068 Sum_probs=188.1
Q ss_pred cHHHHHHHHHHHHHHHhCCCc--cc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcH--HHHHhcCcE
Q 001990 629 GYQEMFNNLGEWLCTITGFDS--FS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP--ATAAMCGMK 703 (985)
Q Consensus 629 G~~~~~~el~~~la~l~G~~~--~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~--~~~~~~G~~ 703 (985)
+..+..+++++++++++|.+. .. +++++|++++..++. .+. .++|+||+++..|..+. ..++..| +
T Consensus 46 ~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~---~l~-----~~gd~vl~~~~~~~~~~~~~~~~~~g-~ 116 (362)
T 2c0r_A 46 VYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPM---NFL-----KEGQTANYVMTGSWASKALKEAKLIG-D 116 (362)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHH---HHC-----CTTCEEEEEECSHHHHHHHHHHHHHS-C
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHH---hcC-----CCCCeEEEEecCcHhHHHHHHHHHhC-C
Confidence 345678899999999999975 22 344666665543333 321 36788887654332222 2345679 9
Q ss_pred EEEEeCCC---CC-CCCHHHHHHHHHhcCCCeEEEEEEcC-CCcccc-ccCHHHHHHHHHHcCCEEEEEccccccccCCC
Q 001990 704 IVSVGTDA---KG-NINIEELRKAAEANRDNLSTLMVTYP-STHGVY-EEGIDEICKIIHDNGGQVYMDGANMNAQVGLT 777 (985)
Q Consensus 704 v~~v~~~~---~g-~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i-~~di~eI~~la~~~g~lliVD~a~~~~~~g~~ 777 (985)
++.++.+. .+ .+|+++++ ++ ++|++|++++| |++|.+ . |+++| +|+++++|++|..+...+
T Consensus 117 ~~~v~~~~~~~~~~~~~~~~~~--i~---~~t~~v~~~~~~n~tG~~~~-~l~~i------~~~~vivD~a~~~~~~~~- 183 (362)
T 2c0r_A 117 THVAASSEASNYMTLPKLQEIQ--LQ---DNAAYLHLTSNETIEGAQFK-AFPDT------GSVPLIGDMSSDILSRPF- 183 (362)
T ss_dssp EEEEEECGGGTTCSCCCGGGCC--CC---TTEEEEEEESEETTTTEECS-SCCCC------TTSCEEEECTTTTTSSCC-
T ss_pred eEEEecccccccccCCCHHHcc--cC---CCcCEEEEeCCcCccceecc-ccccc------CCCEEEEEChhhccCCcc-
Confidence 99998862 23 35766654 54 78999999987 579995 6 78887 899999999996543222
Q ss_pred CCCcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCC---ccccCCCCCCCCCCCCCCCcccccchhhhHHH
Q 001990 778 SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSH---PVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 778 ~~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~---~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~ 854 (985)
...+ .|++++++||+|+ .+|+|++++++++.+.+... .+..... .......++.+. ....
T Consensus 184 ~~~~--~d~~~~s~~K~~g------~~G~G~l~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~t~~~--------~~~~ 246 (362)
T 2c0r_A 184 DLNQ--FGLVYAGAQKNLG------PSGVTVVIVREDLVAESPKHLPTMLRYDTY-VKNNSLYNTPPS--------FGIY 246 (362)
T ss_dssp CGGG--CSEEEEETTTTTC------CSSCEEEEEEGGGSSSCCTTSCGGGCHHHH-HHTTTCSSCCCH--------HHHH
T ss_pred chhH--CcEEEEecccccc------CcCcEEEEEcHHHHhhccccCchHHhHHHH-hhccCcCCCchH--------HHHH
Confidence 1222 4999999999984 34689999998887665421 1000000 000001112111 1122
Q ss_pred HHHHHHHHhchh-hHHHHHHHHHHHHHHHHHHHhc-c-C-CeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHC
Q 001990 855 ISYTYIAMMGSK-GLTEASKIAILNANYMAKRLEK-H-Y-PILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY 930 (985)
Q Consensus 855 ~A~a~l~~lg~~-gl~~~~~~~~~~a~~l~~~L~~-~-~-~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~ 930 (985)
++.+++..+.++ ++.+..++..++++++.+.|++ + + .+... +..+....+.+.++ .+.+..++++.|.++
T Consensus 247 a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~L~~~ 320 (362)
T 2c0r_A 247 MVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVD-VDSRSDMNITFRLA-----SEELEKEFVKASEQE 320 (362)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSC-GGGBCSSEEEEECS-----CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCC-hHHcCCcEEEEEcC-----CcchHHHHHHHHHHC
Confidence 334455555454 6778888889999999999987 3 3 33111 10011112344443 123567899999999
Q ss_pred CCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 931 GFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 931 Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
||.+... .+..+.+|+|++..+|+||++ +++++|++++++
T Consensus 321 gi~~~~g-~~~~~~iRis~~~~~~~e~i~---~l~~~l~~~~~~ 360 (362)
T 2c0r_A 321 GFVGLKG-HRSVGGLRASIYNAVPYESCE---ALVQFMEHFKRS 360 (362)
T ss_dssp TEESCBC-CTTTCSEEEECCTTSCHHHHH---HHHHHHHHHHHH
T ss_pred CCeeccC-CCCCCEEEEECCCCCCHHHHH---HHHHHHHHHHHh
Confidence 9976321 122467999999999999999 999999988764
No 154
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.79 E-value=4.4e-18 Score=192.45 Aligned_cols=283 Identities=12% Similarity=0.091 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHhCCCccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCCC
Q 001990 634 FNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~~ 712 (985)
..++++++++++|.+... +++++|++++. ++++. - ++|+++.+.|..+...++..|++++.+|.+++
T Consensus 63 ~~~l~~~la~~~~~~~~~i~~~~g~t~al~---~~~~~-------~--d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 130 (361)
T 3ftb_A 63 YRRLNKSIENYLKLKDIGIVLGNGASEIIE---LSISL-------F--EKILIIVPSYAEYEINAKKHGVSVVFSYLDEN 130 (361)
T ss_dssp CHHHHHHHHHHHTCCSCEEEEESSHHHHHH---HHHTT-------C--SEEEEEESCCTHHHHHHHHTTCEEEEEECCTT
T ss_pred HHHHHHHHHHHhCCCcceEEEcCCHHHHHH---HHHHH-------c--CcEEEecCChHHHHHHHHHcCCeEEEeecCcc
Confidence 357889999999987644 45566665543 33321 1 78999888777777777889999999999888
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccccC-----CCCCCcCCC
Q 001990 713 GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQVG-----LTSPGYIGA 784 (985)
Q Consensus 713 g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~--di~eI~~la~~~g~lliVD~a~~~~~~g-----~~~~g~~g~ 784 (985)
+.+|+++++++++ + +++|++++| |++|.+.+ ++++|+++|+++|+++++|++|...... ....+..+.
T Consensus 131 ~~~~~~~l~~~l~---~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 206 (361)
T 3ftb_A 131 MCIDYEDIISKID---D-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSC 206 (361)
T ss_dssp SCCCHHHHHHHTT---T-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSS
T ss_pred cCCCHHHHHHhcc---C-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCC
Confidence 8899999999997 5 889999999 57998862 4888889999999999999998522211 001122234
Q ss_pred cEEEeCCcccccccCCCCCCcceeee-ecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHh
Q 001990 785 DVCHLNLHKTFCIPHGGGGPGMGPIG-VKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM 863 (985)
Q Consensus 785 Di~~~s~hKtl~~p~g~GGPg~G~l~-~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~l 863 (985)
++++.|++|+|+. +|.++|+++ .++++.+.+.... . +. .. +.....++.+++.
T Consensus 207 ~i~~~s~sK~~~~----~G~r~g~~~~~~~~~~~~~~~~~------------~--~~--~~----~~~~~~~~~~~l~-- 260 (361)
T 3ftb_A 207 LFIIRAMTKFFAM----PGIRFGYGITNNKEIAAKIKAKQ------------N--PW--NI----NCFAEMAAINCLK-- 260 (361)
T ss_dssp EEEEEESSSTTSC----GGGCCEEEEESCHHHHHHHHTTS------------C--TT--CS----CHHHHHHHHHTSS--
T ss_pred EEEEeeChhhcCC----CCcceeEEEeCCHHHHHHHHhhC------------C--CC--CC----CHHHHHHHHHHhc--
Confidence 5778899999853 456789888 6766665443210 0 01 11 1122222223333
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhccCCee-EcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-CC-
Q 001990 864 GSKGLTEASKIAILNANYMAKRLEKHYPIL-FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-WP- 940 (985)
Q Consensus 864 g~~gl~~~~~~~~~~a~~l~~~L~~~~~i~-~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~-~p- 940 (985)
..+.+.+..++..++++++.+.|++...+. ...+.+.+ +.++++ +.+..++.+.|.++||.+.... ++
T Consensus 261 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~---~~~~~~------~~~~~~l~~~l~~~gi~v~~g~~~~~ 331 (361)
T 3ftb_A 261 DTNYIEESLLWIKKERKRFIEELNKIGFIKRVFSPHANF---VLCRLE------NISGEKLYDSLLKEDIVIRRCCNFIG 331 (361)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCSSSE---EEEEES------SSCHHHHHHHHHTTTEECEECTTSTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCCCCeE---EEEEcC------CCCHHHHHHHHHHCCeEEeeCccCCC
Confidence 234566667777888899999998732332 22222222 345554 2578899999999999874321 21
Q ss_pred -CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHH
Q 001990 941 -VPGTLMIEPTESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 941 -v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
.++.+|++++ +++|+| +++++|+++.+
T Consensus 332 ~~~~~iRis~~---~~~~~~---~l~~~l~~~~~ 359 (361)
T 3ftb_A 332 LDDSFVRFAIK---DEKKNT---KFLRALKGVEN 359 (361)
T ss_dssp CCTTEEEEECC---CHHHHH---HHHHHHHHHHH
T ss_pred CCCCEEEEEcC---CHHHHH---HHHHHHHHHHh
Confidence 2478999985 889999 99999988754
No 155
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.79 E-value=2e-17 Score=191.81 Aligned_cols=292 Identities=14% Similarity=0.127 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCCCcHHHHHhcCcE--------
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPATAAMCGMK-------- 703 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~-~~Hg~~~~~~~~~G~~-------- 703 (985)
...++++++++++|.+. .+++++|++++++++.+++.|...+|..++++||+++ .+|+.....+...|.+
T Consensus 100 ~~~~l~~~la~~~g~~~-v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p 178 (420)
T 2pb2_A 100 PALRLGRKLIDATFAER-VLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGP 178 (420)
T ss_dssp HHHHHHHHHHHHSSCSE-EEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSS
T ss_pred HHHHHHHHHHhhCCCCe-EEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCC
Confidence 46688999999998654 4677889998888888777665444432345777754 6788776665555543
Q ss_pred ----EEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcCC-Cccccc---cCHHHHHHHHHHcCCEEEEEccccccccC
Q 001990 704 ----IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYE---EGIDEICKIIHDNGGQVYMDGANMNAQVG 775 (985)
Q Consensus 704 ----v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~pn-~~G~i~---~di~eI~~la~~~g~lliVD~a~~~~~~g 775 (985)
+..+|.+ |+++|+++++ +++++|+++.++ +.|++. .++++|+++|+++|+++|+|++|. +++-
T Consensus 179 ~~~~~~~~~~~-----d~~~le~~i~---~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~-g~~~ 249 (420)
T 2pb2_A 179 KPADIIHVPFN-----DLHAVKAVMD---DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQC-GMGR 249 (420)
T ss_dssp CCSCEEEECTT-----CHHHHHHHCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTT
T ss_pred CCCCeEEecCC-----CHHHHHHHhc---cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCc-Cccc
Confidence 6666653 8999999997 789999887664 566521 279999999999999999999984 3321
Q ss_pred CCCCC-----cCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhh
Q 001990 776 LTSPG-----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 776 ~~~~g-----~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~ 850 (985)
...+. ...+|++++ +|+|+ +|.++|++++++++.+.+..... + .+.+ +++
T Consensus 250 ~g~~~~~~~~~~~~diit~--sK~l~-----~G~~iG~~~~~~~l~~~l~~~~~-------------~-~t~~----~~~ 304 (420)
T 2pb2_A 250 TGDLFAYMHYGVTPDILTS--AKALG-----GGFPVSAMLTTQEIASAFHVGSH-------------G-STYG----GNP 304 (420)
T ss_dssp TSSSSHHHHHTCCCSEEEE--CGGGG-----TTSCCEEEEECHHHHTTCC-----------------C-CEEC----CCH
T ss_pred CCcHHHHHhcCCCCCeEEe--ccccc-----CCCceEEEEEhHHHHHhhcCCCc-------------C-cccC----cCH
Confidence 11110 124798865 69884 45678999999887665532100 0 0111 233
Q ss_pred hHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc---CCee--EcCCCCceeEEEEEEecCccccCCCCHHHHHH
Q 001990 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAK 925 (985)
Q Consensus 851 ~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~---~~i~--~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~ 925 (985)
..++++.+.+..+..+ +..++..++++++.+.|++. +... ..+ .+. .+.+++.. ..+.+..++.+
T Consensus 305 ~~~aa~~a~L~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~---~~~v~~~~---~~~~~~~~l~~ 374 (420)
T 2pb2_A 305 LACAVAGAAFDIINTP---EVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRG-MGL---LIGAELKP---KYKGRARDFLY 374 (420)
T ss_dssp HHHHHHHHHHHHHSSH---HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE-ETT---EEEEEECG---GGTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-cce---EEEEEECC---CchHHHHHHHH
Confidence 4445556667666543 34456677788888888652 2321 111 122 23345431 00125788999
Q ss_pred HHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 926 RLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 926 ~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
.|.++||.+.... ++.+|++++..+|++|++ +++++|+++++++
T Consensus 375 ~l~~~Gi~v~~~~---~~~iRl~~~~~~t~eei~---~~~~~l~~~l~~~ 418 (420)
T 2pb2_A 375 AGAEAGVMVLNAG---ADVMRFAPSLVVEEADIH---EGMQRFAQAVGKV 418 (420)
T ss_dssp HHHHTTEECEESS---TTEEEECCCTTCCHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHCCCEEEeCC---CCEEEEECCCCCCHHHHH---HHHHHHHHHHHHH
Confidence 9999999875332 478999999999999999 9999999988764
No 156
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.79 E-value=2.4e-17 Score=190.55 Aligned_cols=273 Identities=14% Similarity=0.100 Sum_probs=187.7
Q ss_pred HHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hh
Q 001990 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KD 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~---~~ 290 (985)
.++++.+|+++|.+. +.++.+||+++.+++.++ .. +||+||++...|+++...++.+++..|+++++++. ++
T Consensus 85 ~~le~~lA~l~g~~~--~i~~ssGt~Ai~~al~~l-~~--~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~d~~~ 159 (415)
T 2fq6_A 85 FSLQQAMCELEGGAG--CVLFPCGAAAVANSILAF-IE--QGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGAD 159 (415)
T ss_dssp HHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHTT-CC--TTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGG
T ss_pred HHHHHHHHHHhCCCe--EEEeCCHHHHHHHHHHHH-hC--CCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCCCHHH
Confidence 457789999999864 667889998877766654 22 78999999999999999987766778999999875 56
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHh--CCcEEEEEeccccccCCCCCCcccceEEEecC-ccccccCCC
Q 001990 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHA--NGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~--~galliV~a~~~alg~l~~p~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
+++ ++++|++|++.+| |.+|.+.|+++|+++||+ +|++++|| +.++.+....|.++|+|++++|+ |.+++|
T Consensus 160 le~ai~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD-~a~a~~~~~~p~~~g~Div~~S~sK~lg~~--- 235 (415)
T 2fq6_A 160 IVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMID-NTWAAGVLFKALDFGIDVSIQAATKYLVGH--- 235 (415)
T ss_dssp GGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEE-CTTTTTTSSCGGGGTCSEEEEETTTTTTCS---
T ss_pred HHHhhccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEE-CCCcccccCCccccCCeEEEEeCccccCCC---
Confidence 666 7889999999998 789999999999999999 99999995 35555555566789999999998 766532
Q ss_pred CCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHH
Q 001990 366 GGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 366 GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~ 445 (985)
|+.-.|++++++++++++.. .++..|+.. .+..+ |+...+.+.+..
T Consensus 236 g~~~~G~l~~~~~~~~~l~~-------------------------~~~~~G~~~----~~~~a-----~~~~~~l~~l~~ 281 (415)
T 2fq6_A 236 SDAMIGTAVCNARCWEQLRE-------------------------NAYLMGQMV----DADTA-----YITSRGLRTLGV 281 (415)
T ss_dssp SSCCCEEEEECTTTHHHHHH-------------------------HHHHTTCCC----CHHHH-----HHHHHHHHHHHH
T ss_pred CCceEEEEEeCHHHHHHHHH-------------------------HHHhcCCCC----CHHHH-----HHHHhhhhHHHH
Confidence 22225889888766554310 011112221 12111 111112234555
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEE-E-cCC----C-----------CcceEEEecCC---HHHHHHHHHHcC---ceee--
Q 001990 446 IAQRVHGLAGTFALGLKKLGTVE-V-QGL----P-----------FFDTVKVKCAD---AHAIASAAYKIE---MNLR-- 500 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~-~-~~~----~-----------~~~~~~i~~~~---~~~l~~~L~~~G---i~~~-- 500 (985)
..++..+++.++++.|++.+.++ + ++. + ....++|.+++ ..+..+.|...+ +.++
T Consensus 282 r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s~G 361 (415)
T 2fq6_A 282 RLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWG 361 (415)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEeccCC
Confidence 66777888999999998874343 2 111 1 12356676654 234333333323 2211
Q ss_pred -------e--------------e--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 501 -------V--------------V--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 501 -------~--------------~--~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
. . .++.||+|++..+++++|++|.++|..
T Consensus 362 ~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 362 GYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp SSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred CCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 0 1 247899999999999999999999974
No 157
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.79 E-value=3.4e-18 Score=194.63 Aligned_cols=294 Identities=12% Similarity=0.079 Sum_probs=192.4
Q ss_pred HHHHHHHHHHh-CCCccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCCC
Q 001990 635 NNLGEWLCTIT-GFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 635 ~el~~~la~l~-G~~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~~ 712 (985)
.++++.+++++ +.+... +++++|++++..++.++. .++++|+++.+.|..+...++..|.+++.+|++.+
T Consensus 66 ~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 137 (375)
T 3op7_A 66 PAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI--------EPGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEE 137 (375)
T ss_dssp HHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESSCTHHHHHHHHTTCEEEEEEEEGG
T ss_pred HHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc--------CCCCEEEEeCCCchhHHHHHHHcCCEEEEEecccc
Confidence 46788888887 455443 556667766644444331 46789999988887777778889999999998643
Q ss_pred --CCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccccC-CCCC-CcCCC
Q 001990 713 --GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVG-LTSP-GYIGA 784 (985)
Q Consensus 713 --g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~d---i~eI~~la~~~g~lliVD~a~~~~~~g-~~~~-g~~g~ 784 (985)
+.+|+++|+++++ +++++|++++| |++|.+. | +++|+++|++||+++++|++|...... +... ...+.
T Consensus 138 ~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 213 (375)
T 3op7_A 138 NGWLPDLEKLRQLIR---PTTKMICINNANNPTGAVM-DRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDK 213 (375)
T ss_dssp GTTEECHHHHHHHCC---TTCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTT
T ss_pred CCCCCCHHHHHHhhc---cCCeEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCC
Confidence 4589999999997 78999999998 5799987 7 999999999999999999998531111 1110 12345
Q ss_pred cEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhc
Q 001990 785 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 785 Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg 864 (985)
++.+.+++|+|+. +|.++|++++++++.+.+..... .. ..+.+ .....++.+.+.. .
T Consensus 214 ~i~~~s~sK~~~~----~G~r~G~v~~~~~l~~~~~~~~~------------~~--~~~~~----~~~~~~~~~~l~~-~ 270 (375)
T 3op7_A 214 GIAVNSLSKTYSL----PGIRIGWVAANHQVTDILRDYRD------------YT--MICAG----VFDDLVAQLALAH-Y 270 (375)
T ss_dssp EEEEEESSSSSSC----GGGCCEEEECCHHHHHHHTTTGG------------GT--TSCCC----HHHHHHHHHHHHT-H
T ss_pred EEEEeEChhhcCC----cccceEEEEeCHHHHHHHHHHHh------------hh--ccCCC----cHHHHHHHHHHhc-c
Confidence 6888889999853 35678999998877665532110 00 11111 1122223333332 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHH-HHCCCccCCCC-CCCC
Q 001990 865 SKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL-MDYGFHGPTMS-WPVP 942 (985)
Q Consensus 865 ~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L-~e~Gi~~~~~~-~pv~ 942 (985)
++.+.+..+...++++++.+.|++...+....+.+... +.+.++ .+.+..++.+.| .++||.+.... +..+
T Consensus 271 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~ll~~~gi~v~~g~~~~~~ 343 (375)
T 3op7_A 271 QEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVST--SFVKIA-----VDMPMEDFCLQLLQEHGVLLVPGNRFERD 343 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSC--EEEEEC-----CSSCHHHHHHHHHHHHCEECEEGGGGTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEE--EeEEcC-----CCCCHHHHHHHHHHhCCEEEeChhhhCCC
Confidence 23344555556777888888887632332222222222 223333 145778888888 57899874322 2235
Q ss_pred CEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 943 GTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 943 ~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
+.+|++++. +.++++ ++++.|+++++++
T Consensus 344 ~~iRi~~~~--~~~~i~---~~l~~l~~~l~~~ 371 (375)
T 3op7_A 344 GYVRLGFAC--EQETLI---KGLEKLSQFLRRF 371 (375)
T ss_dssp TEEEECCCS--CHHHHH---HHHHHHHHHHGGG
T ss_pred CeEEEEecC--CHHHHH---HHHHHHHHHHHHH
Confidence 899999764 458899 9999999887654
No 158
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.79 E-value=2.2e-18 Score=198.71 Aligned_cols=303 Identities=14% Similarity=0.045 Sum_probs=195.4
Q ss_pred hcHHHHHHHHHHHHHHHhCCC--ccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEE
Q 001990 628 QGYQEMFNNLGEWLCTITGFD--SFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~~--~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v 704 (985)
+|..++.+.+.+++.+.+|.+ ... +++++|++++..++.++. .++++|+++...|..+...++..|+++
T Consensus 78 ~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~--------~~gd~Vl~~~~~~~~~~~~~~~~g~~~ 149 (406)
T 1xi9_A 78 EGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALL--------DPGDEILVPGPSYPPYTGLVKFYGGKP 149 (406)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHHTTCEE
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhC--------CCCCEEEEcCCCCccHHHHHHHcCCEE
Confidence 455556666666666666543 333 555666666544433321 367899999887766666677899999
Q ss_pred EEEeCCC--CCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccccC--CC
Q 001990 705 VSVGTDA--KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVG--LT 777 (985)
Q Consensus 705 ~~v~~~~--~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~--~di~eI~~la~~~g~lliVD~a~~~~~~g--~~ 777 (985)
+.+|.++ ++.+|+++|+++++ +++++|++++| |++|.+. .++++|+++|+++|+++++|+++.....+ ..
T Consensus 150 ~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~ 226 (406)
T 1xi9_A 150 VEYRTIEEEDWQPDIDDIRKKIT---DRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHI 226 (406)
T ss_dssp EEEEEEGGGTSEECHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCC
T ss_pred EEeecCCCcCCcCCHHHHHHhhC---cCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCC
Confidence 9999874 35689999999997 68999999998 5799875 14999999999999999999998532211 01
Q ss_pred CCCc--CCC-cEEEeCCcccccccCCCCCCcceeee--ecc----cccCcCCCCccccCCCCCCCCCCCCCCCcccccch
Q 001990 778 SPGY--IGA-DVCHLNLHKTFCIPHGGGGPGMGPIG--VKK----HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 778 ~~g~--~g~-Di~~~s~hKtl~~p~g~GGPg~G~l~--~~~----~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g 848 (985)
.... .+. |+++.|+||+|+. .|.++|+++ +++ ++.+.+.... ... .+.+
T Consensus 227 ~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~l~~~l~~~~------------~~~---~~~~--- 284 (406)
T 1xi9_A 227 SPGSLTKDVPVIVMNGLSKVYFA----TGWRLGYMYFVDPENKLSEVREAIDRLA------------RIR---LCPN--- 284 (406)
T ss_dssp CHHHHCSSSCEEEEEESTTTTCC----GGGCCEEEEEECTTCTTHHHHHHHHHHH------------HHT---CCSC---
T ss_pred CHHHcCCCceEEEEeccccccCC----CccEEEEEEEecCchhHHHHHHHHHHHH------------Hhh---cCCC---
Confidence 1111 245 7889999999853 355689998 777 6655432100 000 0111
Q ss_pred hhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHH
Q 001990 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 849 ~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~ 928 (985)
.....++.+++. .+.+.+.+..++..++++++.+.|++...+....+.+..+ +.++++. ..+.+..++.+.|.
T Consensus 285 -~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~l~~~l~ 357 (406)
T 1xi9_A 285 -TPAQFAAIAGLT-GPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFY--IFPKIEV---GPWKNDKEFVLDVL 357 (406)
T ss_dssp -SHHHHHHHHHHH-SCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSE--ECCEECS---CSCSSHHHHHHHHH
T ss_pred -HHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCeeEE--EEEecCc---cCCCCHHHHHHHHH
Confidence 111222333343 2344566667777888899999998632332222222211 2234431 00356788999987
Q ss_pred -HCCCccCCC-CCC--CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 929 -DYGFHGPTM-SWP--VPGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 929 -e~Gi~~~~~-~~p--v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
++||.+... .+. .++.+|++++ +++++|+ ++++.|+++++++
T Consensus 358 ~~~gi~v~~g~~f~~~~~~~lRis~~--~~~~~i~---~~~~~l~~~l~~~ 403 (406)
T 1xi9_A 358 HNAHVLFVHGSGFGEYGAGHFRAVFL--PPIEILE---EAMDRFEKFMKER 403 (406)
T ss_dssp HHHCEECEEGGGGCGGGTTBEEEECC--SCHHHHH---HHHHHHHHHHHHC
T ss_pred HhCCEEEeCchhcCCCCCCEEEEEec--CCHHHHH---HHHHHHHHHHHHH
Confidence 889987432 121 1478999997 8999999 9999999887653
No 159
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.79 E-value=1.5e-18 Score=199.27 Aligned_cols=297 Identities=11% Similarity=0.055 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHhCCCccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCCC
Q 001990 634 FNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~~ 712 (985)
..++++.+++++|.+... ++.++|++++..++.++. .++++|+++...|..+...++..|.+++.+|.+++
T Consensus 76 ~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~--------~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~ 147 (397)
T 2zyj_A 76 YAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFL--------DEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEE 147 (397)
T ss_dssp CHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT
T ss_pred CHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhC--------CCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCC
Confidence 346788899988976544 444555555533333221 36788999887676666667788999999998766
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEE-EEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEcccccccc-CC--CCCCcCCC-
Q 001990 713 GNINIEELRKAAEANRDNLSTLM-VTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQV-GL--TSPGYIGA- 784 (985)
Q Consensus 713 g~iDle~L~~~i~~~~~~t~~Vv-i~~p-n~~G~i~~--di~eI~~la~~~g~lliVD~a~~~~~~-g~--~~~g~~g~- 784 (985)
+ +|+++|++++++ .++++|+ +++| |++|.+.+ ++++|+++|+++|+++++|++|..... +- .....++.
T Consensus 148 ~-~d~~~l~~~l~~--~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~ 224 (397)
T 2zyj_A 148 G-PDLDALEEVLKR--ERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELARE 224 (397)
T ss_dssp E-ECHHHHHHHHHH--CCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHH
T ss_pred C-CCHHHHHHHHhh--cCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcc
Confidence 5 899999999983 2677774 5777 57898861 366999999999999999999853221 11 11112222
Q ss_pred -----cEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHH
Q 001990 785 -----DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 785 -----Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~ 859 (985)
.+++.|+||+|+ +|.++|++++++++.+.+....... ..+++ .....++.++
T Consensus 225 ~~~~~~i~~~s~sK~~~-----~G~r~G~~~~~~~~~~~l~~~~~~~--------------~~~~~----~~~~~a~~~~ 281 (397)
T 2zyj_A 225 AGYPGVIYLGSFSKVLS-----PGLRVAFAVAHPEALQKLVQAKQGA--------------DLHTP----MLNQMLVHEL 281 (397)
T ss_dssp HTCCCEEEEEESTTTTC-----GGGCCEEEECCHHHHHHHHHHHHHH--------------HSSCC----HHHHHHHHHH
T ss_pred cCCCeEEEEeccccccc-----ccceeEEEecCHHHHHHHHHHHHhh--------------cCCCC----HHHHHHHHHH
Confidence 378899999985 3567899999877665442110000 00111 1112222233
Q ss_pred HHHhch-hhHHHHHHHHHHHHHHHHHHHhcc-C-CeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCC
Q 001990 860 IAMMGS-KGLTEASKIAILNANYMAKRLEKH-Y-PILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPT 936 (985)
Q Consensus 860 l~~lg~-~gl~~~~~~~~~~a~~l~~~L~~~-~-~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~ 936 (985)
+.. +. +.+.+..++..++++++.+.|++. . .+....+.+.. .+.++++ .+.+..++.+.|.++||.+..
T Consensus 282 l~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g~--~~~~~~~-----~~~~~~~~~~~l~~~gi~v~~ 353 (397)
T 2zyj_A 282 LKE-GFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGM--FVWMELP-----KGLSAEGLFRRALEENVAFVP 353 (397)
T ss_dssp HTT-THHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSS--EEEEECS-----TTCCHHHHHHHHHHTTEEEEE
T ss_pred HHh-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCccE--EEEEEcC-----CCCCHHHHHHHHHHCCCEEec
Confidence 332 11 335555666777888899988762 2 23222222222 2345554 246788999999999998743
Q ss_pred CC-CC----CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHH
Q 001990 937 MS-WP----VPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 937 ~~-~p----v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
.. +. .++.+|++++.. |++|++ ++++.|+++++++.
T Consensus 354 g~~f~~~~~~~~~iRis~~~~-~~~~i~---~~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 354 GGPFFANGGGENTLRLSYATL-DREGIA---EGVRRLGRALKGLL 394 (397)
T ss_dssp SGGGCTTSCCTTEEEEECSSS-CHHHHH---HHHHHHHHHHHHHH
T ss_pred hHHhcCCCCCCCeEEEEcCCC-CHHHHH---HHHHHHHHHHHHHH
Confidence 21 21 247899999875 899999 99999999887654
No 160
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.79 E-value=6.1e-18 Score=193.90 Aligned_cols=327 Identities=11% Similarity=0.045 Sum_probs=205.2
Q ss_pred cccccccceecccCccccccccc---cccccccCCCCcchhhhcHHHHHHHHHHHHHHHhCCC---cc-c-eecChHHHH
Q 001990 589 HSMIPLGSCTMKLNATTEMMPVT---WPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD---SF-S-LQPNAGAAG 660 (985)
Q Consensus 589 ~~~~~lGs~~~~~~~~~~~~~~~---~~~f~~~~p~~p~e~~~G~~~~~~el~~~la~l~G~~---~~-~-~~~~sGa~g 660 (985)
..++.|+++.+.++......... ......|.+ ..|..++.+++.+++++.+|.+ .. . +++++|+++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~------~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~a 103 (396)
T 3jtx_A 30 MEAVPLHIGEPKHPTPKVITDALTASLHELEKYPL------TAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREA 103 (396)
T ss_dssp CCCEECSCCSCCSCCCHHHHHHHHHTGGGGGSCCC------TTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHH
T ss_pred CCeEEeCCcCCCCCCCHHHHHHHHHHhhhccCCCC------CCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHH
Confidence 34677777766665433222211 112222322 2466677777888888888853 44 4 455556655
Q ss_pred HHHHHHHHHHHHHhcCCCCC-----CEEEEcCCCCCCcHHHHHhcCcEEEEEeCCCCC-CCCHHHHHHHHHhcCCCeEEE
Q 001990 661 EYAGLMVIRAYHKARGDHHR-----NVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKG-NINIEELRKAAEANRDNLSTL 734 (985)
Q Consensus 661 ~~a~l~air~~~~~~g~~~~-----~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~~g-~iDle~L~~~i~~~~~~t~~V 734 (985)
+..++.++. .++ ++|+++.+.|..+...++..|++++.+|.+++| .+|+++|+++++ +++++|
T Consensus 104 l~~~~~~~~--------~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~---~~~~~v 172 (396)
T 3jtx_A 104 LFSFVQTVL--------NPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVW---KRTKLV 172 (396)
T ss_dssp HHHHHHHHC--------CC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHH---HTEEEE
T ss_pred HHHHHHHHh--------CCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhc---cCcEEE
Confidence 544333321 232 689998887766666678899999999986554 689999999998 689999
Q ss_pred EEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccccCCCCC-C----------cCCCcEEEeCCcccccccCC
Q 001990 735 MVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP-G----------YIGADVCHLNLHKTFCIPHG 800 (985)
Q Consensus 735 vi~~p-n~~G~i~--~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~-g----------~~g~Di~~~s~hKtl~~p~g 800 (985)
++++| |++|.+. +++++|+++|+++|+++|+|++|......-..+ . ..+.++++.|++|+|+.
T Consensus 173 ~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~--- 249 (396)
T 3jtx_A 173 FVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNV--- 249 (396)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSC---
T ss_pred EEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCC---
Confidence 99999 5799986 136669999999999999999985311100011 1 24667889999998753
Q ss_pred CCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHH
Q 001990 801 GGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNAN 880 (985)
Q Consensus 801 ~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~ 880 (985)
.|.++|+++.++++.+.+..... ..+.+. +.....++.+.+.. .+.+.+..++..++.+
T Consensus 250 -~G~r~G~~~~~~~~~~~~~~~~~------------~~~~~~------~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~ 308 (396)
T 3jtx_A 250 -PGLRSGFVAGDAELLKNFLLYRT------------YHGSAM------SIPVQRASIAAWDD--EQHVIDNRRLYQEKFE 308 (396)
T ss_dssp -GGGCCEEEEECHHHHHHHHHHHH------------HHTCCC------CHHHHHHHHHHHHC--CHHHHHHHHHHHHHHH
T ss_pred -cccceEEEEeCHHHHHHHHHHHh------------hcccCC------CHHHHHHHHHHhCC--HHHHHHHHHHHHHHHH
Confidence 46789999888777654421100 000111 11112222233331 3445666667778888
Q ss_pred HHHHHHhccCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHH-HCCCccCCCC-C--------CCCCEEEEecc
Q 001990 881 YMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYGFHGPTMS-W--------PVPGTLMIEPT 950 (985)
Q Consensus 881 ~l~~~L~~~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~-e~Gi~~~~~~-~--------pv~~~lris~t 950 (985)
++.+.|++.+.+. .+.+.. .+.++++ +.+..++.+.|. ++||.+.... + +..+.+|++++
T Consensus 309 ~l~~~l~~~~~~~--~~~~~~--~~~~~~~------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~ 378 (396)
T 3jtx_A 309 RVIPILQQVFDVK--LPDASF--YIWLKVP------DGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALV 378 (396)
T ss_dssp HHHHHHTTTSCCC--CCSSSS--EEEEECT------TSCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECC
T ss_pred HHHHHHHhcCCcc--CCCeeE--EEEEECC------CCCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEc
Confidence 8888887743332 122222 2345554 246788999885 5699874311 1 12479999987
Q ss_pred CCCCHHhhchHHHHHHHHHHH
Q 001990 951 ESESKVCHNREDLFFQILLSL 971 (985)
Q Consensus 951 ~~~t~eeId~~~~~i~aL~~i 971 (985)
. +++|++ ++++.|+++
T Consensus 379 ~--~~~~i~---~~l~~l~~~ 394 (396)
T 3jtx_A 379 A--DVATCV---KAAEDIVSL 394 (396)
T ss_dssp S--CHHHHH---HHHHHHHHH
T ss_pred C--CHHHHH---HHHHHHHHH
Confidence 5 899999 999988875
No 161
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.78 E-value=3e-18 Score=198.36 Aligned_cols=338 Identities=13% Similarity=0.124 Sum_probs=208.3
Q ss_pred ccccccceecccCcccccccc----ccccccccCCCCcchhhhcHHHHHHHHHHHHHHHhCCC--c-cc-eecChHHHHH
Q 001990 590 SMIPLGSCTMKLNATTEMMPV----TWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD--S-FS-LQPNAGAAGE 661 (985)
Q Consensus 590 ~~~~lGs~~~~~~~~~~~~~~----~~~~f~~~~p~~p~e~~~G~~~~~~el~~~la~l~G~~--~-~~-~~~~sGa~g~ 661 (985)
.++.|+.+.+.++........ ..... ..+.|.+ ..|..++.+.+.+++.+.+|.+ . .. +++++|++++
T Consensus 29 ~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~-~~~~y~~---~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~ 104 (422)
T 3fvs_A 29 DVVNLGQGFPDFPPPDFAVEAFQHAVSGDF-MLNQYTK---TFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL 104 (422)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHHSCG-GGGSCCC---TTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred CceEeCCCCCCCCCCHHHHHHHHHHHhCCC-ccCCCCC---CCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHH
Confidence 367788777665543332221 11111 0112222 2455566677777777777754 3 23 5556666655
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCC----CC--------CCCHHHHHHHHHhcCC
Q 001990 662 YAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA----KG--------NINIEELRKAAEANRD 729 (985)
Q Consensus 662 ~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~----~g--------~iDle~L~~~i~~~~~ 729 (985)
..++.++. .++++|+++.+.|..+...++..|.+++.+|++. +| .+|+++|+++++ +
T Consensus 105 ~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~---~ 173 (422)
T 3fvs_A 105 FTAFQALV--------DEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT---S 173 (422)
T ss_dssp HHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCC---T
T ss_pred HHHHHHHc--------CCCCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHHHhhcC---C
Confidence 43333221 4678899988888777777888999999999876 33 689999999987 7
Q ss_pred CeEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cCC--CC----CCcCCCcEEEeCCcccccccC
Q 001990 730 NLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VGL--TS----PGYIGADVCHLNLHKTFCIPH 799 (985)
Q Consensus 730 ~t~~Vvi~~p-n~~G~i~~--di~eI~~la~~~g~lliVD~a~~~~~-~g~--~~----~g~~g~Di~~~s~hKtl~~p~ 799 (985)
++++|++++| |++|.+.+ ++++|+++|+++|+++|+|++|.... .+. .. ....+.++++.|++|+|+.
T Consensus 174 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~-- 251 (422)
T 3fvs_A 174 RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSA-- 251 (422)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTC--
T ss_pred CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCC--
Confidence 8999999999 57999862 59999999999999999999985311 111 01 1123445888899999853
Q ss_pred CCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHH------hchhhHHHHHH
Q 001990 800 GGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM------MGSKGLTEASK 873 (985)
Q Consensus 800 g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~------lg~~gl~~~~~ 873 (985)
.|.++|++++++++++.+.... . ..+.+. +.....++.+++.. ...+.+.+..+
T Consensus 252 --~G~r~G~~~~~~~~~~~~~~~~-~-----------~~~~~~------~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 311 (422)
T 3fvs_A 252 --TGWKVGWVLGPDHIMKHLRTVH-Q-----------NSVFHC------PTQSQAAVAESFEREQLLFRQPSSYFVQFPQ 311 (422)
T ss_dssp --GGGCCEEEECCHHHHHHHHHHH-H-----------TTTCCC------CHHHHHHHHHHHHHHHHTTTCTTCHHHHHHH
T ss_pred --ccceEEEEEeCHHHHHHHHHHH-h-----------hccCCC------CcHHHHHHHHHHhhccccccchHHHHHHHHH
Confidence 4678999999887665442100 0 001111 11122222333432 12344666777
Q ss_pred HHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCcccc-C---C---CC-HHHHHHHHH-HCCCccCCC-CC---
Q 001990 874 IAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNT-A---G---IE-PEDVAKRLM-DYGFHGPTM-SW--- 939 (985)
Q Consensus 874 ~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~-~---g---~~-~~~l~~~L~-e~Gi~~~~~-~~--- 939 (985)
+..++++++.+.|++ ++.+. .+.+..+ +.+++...... . + .. ..++++.|. ++||.+... .+
T Consensus 312 ~~~~~~~~l~~~L~~~g~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~ 387 (422)
T 3fvs_A 312 AMQRCRDHMIRSLQSVGLKPI--IPQGSYF--LITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSV 387 (422)
T ss_dssp HHHHHHHHHHHHHHTTTCEEE--BCSBSSE--EEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCH
T ss_pred HHHHHHHHHHHHHHHcCCeec--CCCeeeE--EEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCC
Confidence 778888999999987 44432 2222222 34444310000 0 0 00 457777755 579986431 11
Q ss_pred ----CCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHH
Q 001990 940 ----PVPGTLMIEPTESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 940 ----pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
...+.+|++++. |+++|+ ++++.|+++++
T Consensus 388 ~~~~~~~~~iRis~~~--~~e~i~---~~l~~l~~~l~ 420 (422)
T 3fvs_A 388 PHQKHFDHYIRFCFVK--DEATLQ---AMDEKLRKWKV 420 (422)
T ss_dssp HHHTTSCSEEEEECCC--CHHHHH---HHHHHHHHHHH
T ss_pred cCCCCCCCeEEEEecC--CHHHHH---HHHHHHHHHHh
Confidence 125889999875 999999 99999988765
No 162
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.78 E-value=7.1e-18 Score=188.67 Aligned_cols=280 Identities=13% Similarity=0.030 Sum_probs=178.2
Q ss_pred HHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHH----HhcCcEEEEEeCCC
Q 001990 636 NLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA----AMCGMKIVSVGTDA 711 (985)
Q Consensus 636 el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~----~~~G~~v~~v~~~~ 711 (985)
++++.+++++|.+ ..+.+++|++++..++.++ . .++++|+++...|+.+...+ +..|++++.++.
T Consensus 2 ~l~~~la~~~g~~-~~i~~~sG~~a~~~~~~~~---~-----~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-- 70 (331)
T 1pff_A 2 ALEGKIAKLEHAE-ACAATASGMGAIAASVWTF---L-----KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM-- 70 (331)
T ss_dssp HHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHH---C-----CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT--
T ss_pred hHHHHHHHHhCCC-eEEEeCChHHHHHHHHHHh---c-----CCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC--
Confidence 5788999999998 4567777876654443332 1 36789999988776654443 458999999986
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHH-cCCEEEEEccccccccCCCCCCcCCCcEEEe
Q 001990 712 KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHD-NGGQVYMDGANMNAQVGLTSPGYIGADVCHL 789 (985)
Q Consensus 712 ~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~-~g~lliVD~a~~~~~~g~~~~g~~g~Di~~~ 789 (985)
.|+++++++++ +++++|++++| |++|.+. |+++|+++|++ +|+++++|++|..+... .+..++.|++++
T Consensus 71 ---~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~~~~i~~~~~~~~~~~li~D~a~~~~~~~--~~~~~~~d~~~~ 141 (331)
T 1pff_A 71 ---AVPGNIEKHLK---PNTRIVYFETPANPTLKVI-DIEDAVKQARKQKDILVIVDNTFASPILT--NPLDLGVDIVVH 141 (331)
T ss_dssp ---TSTTHHHHTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHTTSSSCEEEEECTTTHHHHC--CGGGGTCSEEEE
T ss_pred ---CCHHHHHHhhc---CCCeEEEEECCCCCcCccc-CHHHHHHHHhhhcCCEEEEECCCcccccC--ChhhcCCcEEEE
Confidence 48899999887 78999999998 5799998 89999999999 99999999999654322 233578999999
Q ss_pred CCcccccccCCCCCCcceeeeecc-cccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhchhhH
Q 001990 790 NLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 790 s~hKtl~~p~g~GGPg~G~l~~~~-~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl 868 (985)
|+||+|+.| |++.+|++++++ ++.+.+.....++ .+... + +.....+...+.. +
T Consensus 142 s~~K~~~~~---~~r~~G~~~~~~~~~~~~l~~~~~~~-----------~~~~~--~----~~~~~~~~~~l~~-----~ 196 (331)
T 1pff_A 142 SATKYINGH---TDVVAGLVCSRADIIAKVKSQGIKDI-----------TGAII--S----PHDAWLITRGTLT-----L 196 (331)
T ss_dssp ETTTTTSSS---SSCCCEEEEECHHHHHHHHHTCCCCC-----------CCCCC--C----HHHHHHHHHHHHH-----H
T ss_pred ECccccCCC---CCceEEEEEeCcHHHHHHHHHHHHhh-----------cCCCC--C----HHHHHHHHcCcch-----H
Confidence 999998532 222278999987 7665443211000 00111 1 1111111122221 2
Q ss_pred HHHHHHHHHHHHHHHHHHhcc---CCeeEcC----C--------CCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCc
Q 001990 869 TEASKIAILNANYMAKRLEKH---YPILFRG----V--------NGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFH 933 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~~---~~i~~~g----~--------~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~ 933 (985)
....+....+.+.+.+.|++. ....+.+ + .....+.+.+.+. +..++.+.|.++||.
T Consensus 197 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~gI~ 268 (331)
T 1pff_A 197 DMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD--------GLEKAKKVLDNCHVV 268 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS--------SHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC--------CHHHHHHHHHhCCCc
Confidence 222233344555555555431 1111110 0 0001222344431 567888889999996
Q ss_pred cCCCC---------C-----------------CC-CCEEEEeccCCCCHHhhchHHHHHHHHHHH
Q 001990 934 GPTMS---------W-----------------PV-PGTLMIEPTESESKVCHNREDLFFQILLSL 971 (985)
Q Consensus 934 ~~~~~---------~-----------------pv-~~~lris~t~~~t~eeId~~~~~i~aL~~i 971 (985)
+...+ + .+ ++.+|+|++..+|++|++ +++++|+++
T Consensus 269 ~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~---~l~~~l~~~ 330 (331)
T 1pff_A 269 SLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIID---DLKQALDLV 330 (331)
T ss_dssp EECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHH---HHHHHHHTC
T ss_pred eeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHH---HHHHHHHHh
Confidence 42210 0 01 479999999999999999 999988753
No 163
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.78 E-value=5.4e-18 Score=197.36 Aligned_cols=281 Identities=15% Similarity=0.109 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHH----HHhcCcEEEEE
Q 001990 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSV 707 (985)
Q Consensus 632 ~~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~----~~~~G~~v~~v 707 (985)
....++++++++++|.+. .+.+++|++++..++.++ . .++++||++...|+..... ++..|++++.+
T Consensus 114 ~~~~~l~~~lA~l~g~~~-~v~~~sG~~Ai~~al~~l---~-----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v 184 (445)
T 1qgn_A 114 PTTVVLEEKISALEGAES-TLLMASGMCASTVMLLAL---V-----PAGGHIVTTTDCYRKTRIFIETILPKMGITATVI 184 (445)
T ss_dssp HHHHHHHHHHHHHHTCSE-EEEESCHHHHHHHHHHHH---S-----CSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEE
T ss_pred hHHHHHHHHHHHHhCCCc-EEEeCCHHHHHHHHHHHH---h-----CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEe
Confidence 356789999999999874 466778876654443332 1 3678999988877644332 35679999999
Q ss_pred eCCCCCCCCHHHHHHHHHhcCCCe-EEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCCCc
Q 001990 708 GTDAKGNINIEELRKAAEANRDNL-STLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGAD 785 (985)
Q Consensus 708 ~~~~~g~iDle~L~~~i~~~~~~t-~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g~D 785 (985)
+.+ |+++|+++|+ ++| ++|++++| |++|.+. |+++|+++||++|+++++|++|..+. ...+..+|+|
T Consensus 185 ~~~-----d~~~l~~ai~---~~tv~lV~le~p~NptG~v~-dl~~I~~la~~~g~~livD~a~~~~~--~~~~~~~g~D 253 (445)
T 1qgn_A 185 DPA-----DVGALELALN---QKKVNLFFTESPTNPFLRCV-DIELVSKLCHEKGALVCIDGTFATPL--NQKALALGAD 253 (445)
T ss_dssp CSS-----CHHHHHHHHH---HSCEEEEEEESSCTTTCCCC-CHHHHHHHHHHTTCEEEEECTTTCTT--TCCTTTTTCS
T ss_pred CCC-----CHHHHHHHhc---cCCCCEEEEeCCCCCCCccc-CHHHHHHHHHHcCCEEEEECCCcccc--cCCccccCCE
Confidence 874 8999999998 678 99999998 5799998 89999999999999999999986433 2345678999
Q ss_pred EEEeCCcccccccCCCCCCc---ceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHH
Q 001990 786 VCHLNLHKTFCIPHGGGGPG---MGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 786 i~~~s~hKtl~~p~g~GGPg---~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~ 862 (985)
+++.|+||+|+ |+| +|++++++++++.+.... . ..+ ... + + ..+|..+.
T Consensus 254 iv~~S~sK~~g------g~gd~~~G~l~~~~~l~~~l~~~~--~---------~~g--~~~-~----~---~~a~~~~~- 305 (445)
T 1qgn_A 254 LVLHSATKFLG------GHNDVLAGCISGPLKLVSEIRNLH--H---------ILG--GAL-N----P---NAAYLIIR- 305 (445)
T ss_dssp EEEECTTTTTT------CSSSCCCEEEEECHHHHHHHHHHH--H---------HHC--CCC-C----H---HHHHHHHH-
T ss_pred EEEECCccccc------ccccceEEEEEECHHHHHHHHHHH--H---------HhC--CCC-C----H---HHHHHHHH-
Confidence 99999999984 344 899999887665432100 0 001 001 1 1 11222222
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHhccCCe---eEcCCC-C-----------ceeEEEEEEecCccccCCC--CHHHHHH
Q 001990 863 MGSKGLTEASKIAILNANYMAKRLEKHYPI---LFRGVN-G-----------TVAHEFIVDLRGLKNTAGI--EPEDVAK 925 (985)
Q Consensus 863 lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i---~~~g~~-~-----------~~~~~~vv~~~~~~~~~g~--~~~~l~~ 925 (985)
+.+.+....++..++++++.+.|++...+ .+++.. . ...+.+.|.+. +. +...+.+
T Consensus 306 -~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~------~~~~~~~~~l~ 378 (445)
T 1qgn_A 306 -GMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVD------GDLLTTAKFVD 378 (445)
T ss_dssp -HGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEES------SCHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEEC------CCHHHHHHHHH
Confidence 22345555566777888999999874333 222210 0 02233455553 21 1344444
Q ss_pred HHHHCCCccC--C-CC---C-----------------CC-CCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 926 RLMDYGFHGP--T-MS---W-----------------PV-PGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 926 ~L~e~Gi~~~--~-~~---~-----------------pv-~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
.|...++.++ . ++ . .+ ++.||+|++ .||+| .++++|+++++.
T Consensus 379 ~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid---~li~~L~~al~~ 444 (445)
T 1qgn_A 379 ALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFD---DLKADILQALDS 444 (445)
T ss_dssp HCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHH---HHHHHHHHHHHH
T ss_pred hCCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHH---HHHHHHHHHHhh
Confidence 4442344321 1 10 0 12 378999987 57899 999999988753
No 164
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.78 E-value=7.3e-18 Score=193.73 Aligned_cols=308 Identities=15% Similarity=0.026 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCCC
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~~ 712 (985)
...++++.+++++|.+. .+++++|++++..++.+++ ..++++|+++...|..+...+...|++++.++++++
T Consensus 33 ~~~~l~~~la~~~~~~~-v~~~~ggt~al~~~~~~l~-------~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 104 (394)
T 1o69_A 33 FVNRFEQSVKDYSKSEN-ALALNSATAALHLALRVAG-------VKQDDIVLASSFTFIASVAPICYLKAKPVFIDCDET 104 (394)
T ss_dssp HHHHHHHHHHHHHCCSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCGGGTHHHHHTTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHhCCCc-EEEeCCHHHHHHHHHHHcC-------CCCCCEEEECCCccHHHHHHHHHcCCEEEEEEeCCC
Confidence 46689999999999864 3566777776644444331 146789999999888887778889999999999877
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCC-CCc-CCCcEEEeC
Q 001990 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS-PGY-IGADVCHLN 790 (985)
Q Consensus 713 g~iDle~L~~~i~~~~~~t~~Vvi~~pn~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~-~g~-~g~Di~~~s 790 (985)
+.+|+++|++++++.++++++|++++ ++|... |+++|.++|+++|+++++|++|..+...... .+. .++|+.+++
T Consensus 105 ~~~d~~~l~~~i~~~~~~~~~v~~~~--~~G~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s 181 (394)
T 1o69_A 105 YNIDVDLLKLAIKECEKKPKALILTH--LYGNAA-KMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYN 181 (394)
T ss_dssp SSBCHHHHHHHHHHCSSCCCEEEEEC--GGGCCC-CHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECC
T ss_pred CCcCHHHHHHHHhcccCCceEEEEEC--CCCChh-hHHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEe
Confidence 89999999999984322688999886 579887 8999999999999999999999643321111 112 357888888
Q ss_pred CcccccccCCCCCCcceeeeec-ccccCcCCC-CccccCCCCCCCC-CCCCCCCcccccchhhhHHHHHHHHHHHhchhh
Q 001990 791 LHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPS-HPVVSTGGIPAPE-KSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 791 ~hKtl~~p~g~GGPg~G~l~~~-~~l~~~lpg-~~~g~~~~~~~~~-~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~g 867 (985)
.||.+ +|+++|+++++ +++.+.+.. ...+.... ..+. .+.+. +..+ ....++ ..+..+ +.
T Consensus 182 ~~K~l------~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~g~-~~~~----~~~~aa---~~l~~l--~~ 244 (394)
T 1o69_A 182 GNKII------TTSGGGMLIGKNKEKIEKARFYSTQARENC-LHYEHLDYGY-NYRL----SNVLGA---IGVAQM--EV 244 (394)
T ss_dssp TTSSS------CCSSCEEEEESCHHHHHHHHHHTBTCCCSS-SSCCCSSCCC-BCBC----CHHHHH---HHHHHH--TT
T ss_pred CCccC------CCCCceEEEECCHHHHHHHHHHHHhccccC-ccccccccCc-ccCc----CHHHHH---HHHHHH--HH
Confidence 89977 34578999996 565433211 00000000 0000 00000 0000 111111 111111 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCeeEcCCCC---ceeEEEEEEecCcc----------------ccCCCCHHHHHHHHH
Q 001990 868 LTEASKIAILNANYMAKRLEKHYPILFRGVNG---TVAHEFIVDLRGLK----------------NTAGIEPEDVAKRLM 928 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~---~~~~~~vv~~~~~~----------------~~~g~~~~~l~~~L~ 928 (985)
+.+..++..++++++.+.|++. +...++.. +.++.+.+.++.-. ...+.+..++.+.|.
T Consensus 245 l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 322 (394)
T 1o69_A 245 LEQRVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLK 322 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHH
Confidence 4556677788889999999764 32222111 11112344443100 000235678999999
Q ss_pred HCCCccCCCCC-----C-CC---------------CEEEEeccCCCCHHhhchHHHHHHHHHHHHH
Q 001990 929 DYGFHGPTMSW-----P-VP---------------GTLMIEPTESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 929 e~Gi~~~~~~~-----p-v~---------------~~lris~t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
++||.+..... | .. ..+++..+..+|++|+| +++++|+++++
T Consensus 323 ~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~---~~~~~l~~~~~ 385 (394)
T 1o69_A 323 NKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVY---EISKLILKSIK 385 (394)
T ss_dssp HTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHH---HHHHHHHHHHC
T ss_pred HcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHH---HHHHHHHHHHh
Confidence 99998754321 1 11 34666668889999999 99999988754
No 165
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.78 E-value=2.7e-18 Score=197.64 Aligned_cols=298 Identities=13% Similarity=0.055 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCC-
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA- 711 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~- 711 (985)
...++++.+++++|.+. .+++++|++++..++.+++ ..++++|+++...|..+...++..|++++.++.++
T Consensus 64 ~~~~l~~~la~~~~~~~-~v~~~~Gt~a~~~~l~~~~-------~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 135 (399)
T 2oga_A 64 ELEGFEAEFAAYCETDH-AVGVNSGMDALQLALRGLG-------IGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHED 135 (399)
T ss_dssp HHHHHHHHHHHHTTSSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCSS
T ss_pred hHHHHHHHHHHHHCCCe-EEEecCHHHHHHHHHHHhC-------CCCcCEEEECCCccHHHHHHHHHCCCEEEEEecCCC
Confidence 35678899999999874 4666778776644443321 13678999998878777777788999999999876
Q ss_pred CCCCCHHHHHHHHHhcCCCeEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCC--CcEEEe
Q 001990 712 KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG--ADVCHL 789 (985)
Q Consensus 712 ~g~iDle~L~~~i~~~~~~t~~Vvi~~pn~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g--~Di~~~ 789 (985)
++.+|+++|+++++ +++++|++++ ++|.+. |+++|+++|+++|+++|+|++|..+.. . ....++ .|++++
T Consensus 136 ~~~~d~~~l~~~i~---~~~~~v~~~n--~tG~~~-~l~~i~~l~~~~~~~li~Dea~~~g~~-~-~~~~~~~~~di~~~ 207 (399)
T 2oga_A 136 HPTLDPLLVEKAIT---PRTRALLPVH--LYGHPA-DMDALRELADRHGLHIVEDAAQAHGAR-Y-RGRRIGAGSSVAAF 207 (399)
T ss_dssp SSSBCHHHHHHHCC---TTEEEECCBC--GGGCCC-CHHHHHHHHHHHTCEECEECTTCTTCE-E-TTEETTCTTCEEEE
T ss_pred CCCcCHHHHHHhcC---CCCeEEEEeC--CcCCcc-CHHHHHHHHHHcCCEEEEECcccccCc-c-CCeecccccCEEEE
Confidence 47899999999997 6888888654 579987 899999999999999999999864421 1 111233 699999
Q ss_pred CCc--ccccccCCCCCCcceeeeec-ccccCcCCCC-ccccCCCCCCCCC-CCCCCCcccccchhhhHHHHHHHHHHHhc
Q 001990 790 NLH--KTFCIPHGGGGPGMGPIGVK-KHLAPFLPSH-PVVSTGGIPAPEK-SQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 790 s~h--Ktl~~p~g~GGPg~G~l~~~-~~l~~~lpg~-~~g~~~~~~~~~~-~~~t~~i~s~~~g~~~~~~~A~a~l~~lg 864 (985)
|+| |+|+.+ | .+|+++++ +++.+.+... ..+... .+.. ..++ +... +...++++.+.+.
T Consensus 208 S~~~sK~~~~~----G-~~g~~~~~~~~~~~~l~~~~~~g~~~---~~~~~~~g~-~~~~----~~~~~a~~~~~l~--- 271 (399)
T 2oga_A 208 SFYPGKNLGCF----G-DGGAVVTGDPELAERLRMLRNYGSRQ---KYSHETKGT-NSRL----DEMQAAVLRIRLA--- 271 (399)
T ss_dssp ECCTTSSSCCS----S-CCEEEEESCHHHHHHHHHHHBTTCSS---TTCCCSCCC-BCCC----CHHHHHHHHHHHH---
T ss_pred eCCCCccCCcC----C-ceEEEEeCCHHHHHHHHHHHhcCccc---ccccccccc-CCCc----CHHHHHHHHHHHH---
Confidence 995 988421 3 46777775 5554332110 001100 0000 0011 0010 1122222222222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhc--cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-CCC
Q 001990 865 SKGLTEASKIAILNANYMAKRLEK--HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-WPV 941 (985)
Q Consensus 865 ~~gl~~~~~~~~~~a~~l~~~L~~--~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~-~pv 941 (985)
.+.+..++..++++++.+.|++ ++.+... +.......+.+.+. ..+..++.+.|.++||.+.... .+.
T Consensus 272 --~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~-~~~~~~~~~~~~~~------~~~~~~l~~~L~~~gI~v~~~~~~~~ 342 (399)
T 2oga_A 272 --HLDSWNGRRSALAAEYLSGLAGLPGIGLPVT-APDTDPVWHLFTVR------TERRDELRSHLDARGIDTLTHYPVPV 342 (399)
T ss_dssp --THHHHHHHHHHHHHHHHHHTTTCTTCBCCCC-CTTEECCCSSEEEE------CSSHHHHHHHHHHTTBCCBCSCSSCG
T ss_pred --HHHHHHHHHHHHHHHHHHHhccCCCccccCC-CCCCcceeEEEEEE------CCCHHHHHHHHHHCCCceecCCCCcc
Confidence 2334455666778888888876 3333211 11111100112222 2367889999999999875421 110
Q ss_pred -----------------------CCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 942 -----------------------PGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 942 -----------------------~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
.+.+|++++..+|++|++ +++++|++++++
T Consensus 343 ~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~---~~~~~l~~~~~~ 395 (399)
T 2oga_A 343 HLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQAL---RVIDAVREWAER 395 (399)
T ss_dssp GGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHH---HHHHHHHHHHHS
T ss_pred ccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHH---HHHHHHHHHHHH
Confidence 157999999999999999 999999988764
No 166
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.78 E-value=9.8e-18 Score=193.65 Aligned_cols=301 Identities=11% Similarity=0.076 Sum_probs=194.6
Q ss_pred hcHHHHHHHHHHHHHHHhCC--Cc--cceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcE
Q 001990 628 QGYQEMFNNLGEWLCTITGF--DS--FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~--~~--~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~ 703 (985)
+|..++.+.+.+++.+.+|. +. ..+++++|++++..++.++. .++++|+++...|..+...++..|++
T Consensus 75 ~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~ 146 (412)
T 2x5d_A 75 RGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATL--------DHGDTILVPNPSYPIHIYGAVIAGAQ 146 (412)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHHHTCE
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhC--------CCCCEEEEcCCCchhHHHHHHHcCCE
Confidence 45444444555555555585 32 34566677766644433321 36789999888776666667788999
Q ss_pred EEEEeCCCC-C-CCCHHHHHHHHHhcCCCeEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEcccccccc-CC-
Q 001990 704 IVSVGTDAK-G-NINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQV-GL- 776 (985)
Q Consensus 704 v~~v~~~~~-g-~iDle~L~~~i~~~~~~t~~Vvi~~pn-~~G~i~~--di~eI~~la~~~g~lliVD~a~~~~~~-g~- 776 (985)
++.+|.+++ + .+|+++|+++++ +++++|++++|+ ++|.+.+ ++++|+++|+++|+++|+|++|..... +-
T Consensus 147 ~~~~~~~~~~~~~~d~~~l~~~i~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~ 223 (412)
T 2x5d_A 147 VRSVPLVPGIDFFNELERAIRESI---PKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWK 223 (412)
T ss_dssp EEEEECSTTSCHHHHHHHHHHTEE---SCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC
T ss_pred EEEeecCCccCCCCCHHHHHHhcc---cCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCC
Confidence 999998765 3 378999999887 678899999984 6898852 479999999999999999999854221 10
Q ss_pred -CCCC----cCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhh
Q 001990 777 -TSPG----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 777 -~~~g----~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~ 851 (985)
.... ..+.|+++.|+||+|+. +|.++|++++++++.+.+...... .+.+ . +..
T Consensus 224 ~~~~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~l~~~~~~------------~~~~--~----~~~ 281 (412)
T 2x5d_A 224 APSIMQVPGAKDIAVEFFTLSKSYNM----AGWRIGFMVGNPELVSALARIKSY------------HDYG--T----FTP 281 (412)
T ss_dssp CCCGGGSTTGGGTEEEEEECC-CCSC----TTSCCEEEEECHHHHHHHHHHHHH------------HCCC--C----CHH
T ss_pred CCChhhccCccCcEEEEecCccccCC----cccceEEEEcCHHHHHHHHHHHhh------------hccC--C----CHH
Confidence 0111 13678999999999853 466789999988776544211000 0001 1 112
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCC---CHHHHHHHH
Q 001990 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGI---EPEDVAKRL 927 (985)
Q Consensus 852 ~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~---~~~~l~~~L 927 (985)
...++.+++. .+.+.+.+..++..++++++.+.|++ ++.+. .+.+..+ +.++++ .+. +..++.+.|
T Consensus 282 ~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~g~~--~~~~~~-----~~~~~~~~~~~~~~l 351 (412)
T 2x5d_A 282 LQVAAIAALE-GDQQCVRDIARQYQQRRDVLVKGLREAGWMVE--NPKASMY--VWAKIP-----EPYAHLGSLEFAKKL 351 (412)
T ss_dssp HHHHHHHHHH-SCSHHHHHHHHHHHHHHHHHHHHHHHHTCCCC--CCSBSSE--EEEECC-----TTTGGGCHHHHHHHH
T ss_pred HHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEec--CCCeeeE--EEEEcC-----CccCCCCHHHHHHHH
Confidence 2222333343 23445666777778888999999987 44442 2221221 334553 134 678899998
Q ss_pred HH-CCCccCCCC-CC--CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHH
Q 001990 928 MD-YGFHGPTMS-WP--VPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 928 ~e-~Gi~~~~~~-~p--v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
.+ +||.+.... +. .++.+|++++. ++++++ ++++.|++++++..
T Consensus 352 ~~~~gi~v~~g~~f~~~~~~~iRis~~~--~~~~l~---~~l~~l~~~l~~~~ 399 (412)
T 2x5d_A 352 LQDAKVSVSPGIGFGDYGDDHVRFALIE--NRDRLR---QAVRGIKAMFRADG 399 (412)
T ss_dssp HHHHCEECEEGGGGCGGGTTEEEEECCS--CHHHHH---HHHHHHHHHHHHTT
T ss_pred HHHCCEEEeCchhhCCCCCCeEEEEecC--CHHHHH---HHHHHHHHHHHhcC
Confidence 65 699875322 21 24789999986 889999 99999999887643
No 167
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.78 E-value=3.3e-18 Score=200.10 Aligned_cols=301 Identities=14% Similarity=0.117 Sum_probs=193.8
Q ss_pred hcHHHHHHHHHHHHHHHhCCC--ccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEE
Q 001990 628 QGYQEMFNNLGEWLCTITGFD--SFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~~--~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v 704 (985)
.|..++.+++.+++.+.+|.+ ... +++++|++++..++.++. .++++||++++.|..+...++..|.++
T Consensus 95 ~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 166 (447)
T 3b46_A 95 RGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLL--------NAGDEVIVFEPFFDQYIPNIELCGGKV 166 (447)
T ss_dssp TCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHc--------CCCCEEEEeCCCchhHHHHHHHcCCEE
Confidence 465555656666666656653 233 455666666644444331 467899999888877777788899999
Q ss_pred EEEeCCC------------CCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccc
Q 001990 705 VSVGTDA------------KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGAN 769 (985)
Q Consensus 705 ~~v~~~~------------~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~--~di~eI~~la~~~g~lliVD~a~ 769 (985)
+.+|.++ ++.+|+++|+++++ +++++|++++| |++|.+. .++++|+++|++||+++++|+++
T Consensus 167 ~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~ 243 (447)
T 3b46_A 167 VYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT---SKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVY 243 (447)
T ss_dssp EEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred EEEeCCCccccccccccccCcccCHHHHHHhhc---cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccc
Confidence 9999754 35799999999986 78999999999 5789884 26999999999999999999998
Q ss_pred cccc-cC-CCC-----CCcCCCcEEEeCCcccccccCCCCCCcceeeee-cccccCcCCCCccccCCCCCCCCCCCCCCC
Q 001990 770 MNAQ-VG-LTS-----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVSTGGIPAPEKSQPLGT 841 (985)
Q Consensus 770 ~~~~-~g-~~~-----~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~-~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~ 841 (985)
.... .+ ... ++.++.|+++.|+||+|+. .|.++|++++ ++++++.+..... ..+.+
T Consensus 244 ~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~----~G~riG~~~~~~~~l~~~l~~~~~------------~~~~~ 307 (447)
T 3b46_A 244 EHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAA----TGWRIGWVLSLNAELLSYAAKAHT------------RICFA 307 (447)
T ss_dssp TTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTC----TTSCCEEEECSCHHHHHHHHHHHH------------HHTSS
T ss_pred hhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCC----cchhhEEEEeCCHHHHHHHHHHHh------------hccCC
Confidence 5311 11 001 1234679999999999854 3677999999 7776654321000 00001
Q ss_pred cccccchhhhHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccC---
Q 001990 842 IAAAPWGSALILPISYTYIAMMG-SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTA--- 916 (985)
Q Consensus 842 i~s~~~g~~~~~~~A~a~l~~lg-~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~--- 916 (985)
.+ .....++.+++.... .+.+.+..++..++++++.+.|++ ++.+. .+.+..+ +.++++......
T Consensus 308 --~~----~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~g~~--~~~~~~~~~~p~~~~ 377 (447)
T 3b46_A 308 --SP----SPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDELGLPYT--APEGTYF--VLVDFSKVKIPEDYP 377 (447)
T ss_dssp --CC----HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTCCEE--CCSBSSE--EEEECTTCCCCTTCC
T ss_pred --CC----hHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeec--CCCeeEE--EEEecccccCccccc
Confidence 11 111222333444332 233556667778888999999987 55543 2222222 345554210000
Q ss_pred -------CCCHHHHHHHHH-HCCCccCCC-CC-C------CCCEEEEeccCCCCHHhhchHHHHHHHHHH
Q 001990 917 -------GIEPEDVAKRLM-DYGFHGPTM-SW-P------VPGTLMIEPTESESKVCHNREDLFFQILLS 970 (985)
Q Consensus 917 -------g~~~~~l~~~L~-e~Gi~~~~~-~~-p------v~~~lris~t~~~t~eeId~~~~~i~aL~~ 970 (985)
+.+..++++.|. ++||.+... .+ + ..+.+|++++ .++++|+ ++++.|++
T Consensus 378 ~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~--~~~e~l~---~~~~~l~~ 442 (447)
T 3b46_A 378 YPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVC--KDDAYLE---NAVERLKL 442 (447)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECC--SCHHHHH---HHHHHGGG
T ss_pred cccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEe--CCHHHHH---HHHHHHHH
Confidence 134568888886 589987432 12 1 1578999997 4899999 88888765
No 168
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.78 E-value=6.4e-18 Score=196.18 Aligned_cols=308 Identities=11% Similarity=0.043 Sum_probs=193.3
Q ss_pred hcHHHHHHHHHHHHHHHhC---CCccceec-ChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcE
Q 001990 628 QGYQEMFNNLGEWLCTITG---FDSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G---~~~~~~~~-~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~ 703 (985)
+|..++.+.+.+++.+.+| .+...+.+ ++|++++..+ ++.+. .++++|+++.+.|..+...++..|.+
T Consensus 85 ~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~---~~~l~-----~~gd~Vl~~~p~y~~~~~~~~~~g~~ 156 (425)
T 1vp4_A 85 EGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLI---GKLFL-----DDESYCVLDDPAYLGAINAFRQYLAN 156 (425)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHH---HHHHC-----CTTCEEEEEESCCHHHHHHHHTTTCE
T ss_pred CCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHH---HHHhC-----CCCCEEEEeCCCcHHHHHHHHHcCCE
Confidence 3444445455555555448 44444444 4445444333 33321 36789999888776666667788999
Q ss_pred EEEEeCCCCCCCCHHHHHHHHHhc-----CCCeEEEE-EEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEcccccccc
Q 001990 704 IVSVGTDAKGNINIEELRKAAEAN-----RDNLSTLM-VTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQV 774 (985)
Q Consensus 704 v~~v~~~~~g~iDle~L~~~i~~~-----~~~t~~Vv-i~~p-n~~G~i~~--di~eI~~la~~~g~lliVD~a~~~~~~ 774 (985)
++.+|.++++ +|+++|++++++. ++++++|+ +++| |++|.+.+ ++++|+++|+++|+++++|+++.....
T Consensus 157 ~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~ 235 (425)
T 1vp4_A 157 FVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRY 235 (425)
T ss_dssp EEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBC
T ss_pred EEEeccCCCC-CCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccC
Confidence 9999987665 8999999999731 12788874 6778 57898862 478999999999999999999853211
Q ss_pred -CC--CCC---CcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccch
Q 001990 775 -GL--TSP---GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 775 -g~--~~~---g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g 848 (985)
+- ... ...+.++++.|++|+|+ +|.++|++++++++.+.+...... . ..+.
T Consensus 236 ~g~~~~~~~~~~~~~~~i~~~s~sK~~~-----~G~r~G~~~~~~~~~~~l~~~~~~------------~--~~~~---- 292 (425)
T 1vp4_A 236 EGETVDPIFKIGGPERVVLLNTFSKVLA-----PGLRIGMVAGSKEFIRKIVQAKQS------------A--DLCS---- 292 (425)
T ss_dssp SSCCCCCHHHHHCTTTEEEEEESTTTTC-----GGGCEEEEECCHHHHHHHHHHHHH------------H--HSSC----
T ss_pred CCCCCcCHHHhCCCCCEEEEeccccccc-----cccceEEEeeCHHHHHHHHHHhhh------------h--cCCC----
Confidence 11 011 11245788899999984 256689999998776544211000 0 0011
Q ss_pred hhhHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHHhccC----CeeEcCCCCceeEEEEEEecCccccCCCCHHHH
Q 001990 849 SALILPISYTYIAMMG-SKGLTEASKIAILNANYMAKRLEKHY----PILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDV 923 (985)
Q Consensus 849 ~~~~~~~A~a~l~~lg-~~gl~~~~~~~~~~a~~l~~~L~~~~----~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l 923 (985)
+.....++.+++.... .+.+.+..++..++++++.+.|++.+ .+.+..+.+.. .+.++++ .+.+..++
T Consensus 293 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~--~~~~~~~-----~~~~~~~l 365 (425)
T 1vp4_A 293 PAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGL--FIWLTLP-----EGFDTWEM 365 (425)
T ss_dssp CHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSS--EEEEECC-----TTCCTTTT
T ss_pred CHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccE--EEEEEcC-----CCCCHHHH
Confidence 1122222334444321 23345556666778889999887631 23332222222 2345553 13456778
Q ss_pred HHHHHHCCCccCCCC-C-C---CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHHHc
Q 001990 924 AKRLMDYGFHGPTMS-W-P---VPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTTFA 978 (985)
Q Consensus 924 ~~~L~e~Gi~~~~~~-~-p---v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~~~ 978 (985)
.+.|.++||.+.... + + .++.+|++++.. |++|++ ++++.|+++++++.+.
T Consensus 366 ~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~e~i~---~~l~~l~~~l~~~~~~ 421 (425)
T 1vp4_A 366 FEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLP-PDEKIV---EGIKRLREVVLEYGKE 421 (425)
T ss_dssp HHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSS-CHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCC-CHHHHH---HHHHHHHHHHHHHHhh
Confidence 999998999874321 2 1 247899999874 899999 9999999998876654
No 169
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.78 E-value=3.4e-18 Score=197.12 Aligned_cols=298 Identities=12% Similarity=0.047 Sum_probs=194.7
Q ss_pred hcHHHHHHHHHHHHHHHhCCC----ccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcE
Q 001990 628 QGYQEMFNNLGEWLCTITGFD----SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~~----~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~ 703 (985)
+|..++.+.+.+++.+.+|.+ ...++.++|++++..++.++. .++++|+++.+.|..+...++..|.+
T Consensus 85 ~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~--------~~gd~Vl~~~p~y~~~~~~~~~~g~~ 156 (404)
T 2o1b_A 85 HGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVI--------NPGDYVLLPDPGYTDYLAGVLLADGK 156 (404)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCSSHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhc--------CCCCEEEEcCCCchhHHHHHHHCCCE
Confidence 344455555555555555975 233555666666544443321 36789999888887777778889999
Q ss_pred EEEEeCCCCC-CCCHHHHHHHHHhcCCCeEEEEEEcCC-Ccccccc--CHHHHHHHHHHcCCEEEEEcccccccc-C-CC
Q 001990 704 IVSVGTDAKG-NINIEELRKAAEANRDNLSTLMVTYPS-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQV-G-LT 777 (985)
Q Consensus 704 v~~v~~~~~g-~iDle~L~~~i~~~~~~t~~Vvi~~pn-~~G~i~~--di~eI~~la~~~g~lliVD~a~~~~~~-g-~~ 777 (985)
++.+|.++++ .+|+++|+++++ +++++|++++|+ ++|.+.+ ++++|+++|+++|+++++|++|..... + ..
T Consensus 157 ~~~v~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~ 233 (404)
T 2o1b_A 157 PVPLNLEPPHYLPDWSKVDSQII---DKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNP 233 (404)
T ss_dssp EEEEECCTTTCCCCGGGSCHHHH---HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCC
T ss_pred EEEeccCcccCcCCHHHHHHhhc---cCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCC
Confidence 9999987643 589999999997 678999999884 6898862 488999999999999999999853221 1 10
Q ss_pred CCCc----CCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHH
Q 001990 778 SPGY----IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 778 ~~g~----~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~ 853 (985)
.... .+.|+++.|+||+|+. .|.++|++++++++.+.+...... .+.+. +....
T Consensus 234 ~~~~~~~~~~~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~l~~~~~~------------~~~~~------~~~~~ 291 (404)
T 2o1b_A 234 SILASENGKDVAIEIYSLSKGYNM----SGFRVGFAVGNKDMIQALKKYQTH------------TNAGM------FGALQ 291 (404)
T ss_dssp CGGGSTTHHHHEEEEEESTTTTTC----GGGCCEEEEECHHHHHHHHHHHHH------------HCCCC------CHHHH
T ss_pred ChhhcCCCCCCEEEEEecchhccC----chhheEeEecCHHHHHHHHHHHhh------------ccCCC------CHHHH
Confidence 1111 2457889999999853 356789999988776544211000 00011 11122
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHH-HCC
Q 001990 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYG 931 (985)
Q Consensus 854 ~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~-e~G 931 (985)
.++.+++.. +.+.+.+..++..++++++.+.|++ ++.+. .+.+..+ +.++++ .+.+..++.++|. ++|
T Consensus 292 ~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~g~~--~~~~~~-----~~~~~~~l~~~l~~~~g 361 (404)
T 2o1b_A 292 DAAIYALNH-YDDFLEEQSNVFKTRRDRFEAMLAKADLPFV--HAKGGIY--VWLETP-----PGYDSEQFEQFLVQEKS 361 (404)
T ss_dssp HHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHTTCCEE--CCCBSSE--EEEECC-----TTCCHHHHHHHHHHHHC
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhcCCeec--CCCcceE--EEEeCC-----CCCCHHHHHHHHHHHCC
Confidence 223334433 3455666667777888999999987 44442 2222221 334553 2456788999987 579
Q ss_pred CccCCCC-CC--CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHH
Q 001990 932 FHGPTMS-WP--VPGTLMIEPTESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 932 i~~~~~~-~p--v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
|.+.... +. .++.+|++++. ++++++ ++++.|+++++
T Consensus 362 i~v~~g~~f~~~~~~~iRis~~~--~~e~l~---~~l~~l~~~l~ 401 (404)
T 2o1b_A 362 ILVAPGKPFGENGNRYVRISLAL--DDQKLD---EAAIRLTELAY 401 (404)
T ss_dssp EECEESGGGCGGGTTEEEEECCS--CTTHHH---HHHHHHHGGGG
T ss_pred EEEeCchhhCcCCCCeEEEEEcC--CHHHHH---HHHHHHHHHHH
Confidence 9874321 21 24789999985 788999 99988887654
No 170
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.78 E-value=2e-18 Score=201.72 Aligned_cols=284 Identities=13% Similarity=0.073 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeC--C
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT--D 710 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~--~ 710 (985)
.+.++++++++ +|.+...+++++|++++.+++.++. .++++|++++..|.++...+...|+++++++. +
T Consensus 58 ~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~--------~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~ 128 (446)
T 2x3l_A 58 VILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFS--------QKKGDILMARNVHKSVLHALDISQQEGHFIETHQS 128 (446)
T ss_dssp HHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTT--------TSSSCEEECTTCCHHHHHHHHHHTCCEEECEEEEC
T ss_pred HHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhc--------CCCCEEEEecCccHHHHHHHHHcCCeEEEEeCeec
Confidence 46789999999 9987544666666676655544331 36789999999888887778889999999988 6
Q ss_pred CC----CCCCHHHHHHHHHhcCCCeEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC----CCCcC
Q 001990 711 AK----GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT----SPGYI 782 (985)
Q Consensus 711 ~~----g~iDle~L~~~i~~~~~~t~~Vvi~~pn~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~----~~g~~ 782 (985)
++ +.+|+++| ++ +++++|++++||++|.+. |+++|+++||++|+++++|++|.. ...+. ....+
T Consensus 129 ~~~~~~~~~d~~~l---~~---~~~~~v~~~~~n~~G~~~-~l~~I~~l~~~~~~~livDea~~~-~~~f~~~~~~~~~~ 200 (446)
T 2x3l_A 129 PLTNHYNKVNLSRL---NN---DGHKLVVLTYPNYYGETF-NVEEVIKSLHQLNIPVLIDEAHGA-HFGLQGFPDSTLNY 200 (446)
T ss_dssp TTTSSEEEEEC-------------CCEEEEESSCTTSCCC-CHHHHHHHHHHTTCCEEEECTTCT-TTTSTTSCCCGGGG
T ss_pred cccCcCCCCCHHHH---cC---CCceEEEEECCCCCeEec-CHHHHHHHHHhcCCeEEEcchhhh-hhccCCCCCChHHc
Confidence 54 56888887 44 678999999998999998 899999999999999999999864 22221 22345
Q ss_pred CCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHH
Q 001990 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 783 g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~ 862 (985)
++|+++.|+||+++ |+.|+|++++++++++ +. .+... .. ....++++ ...+++..+.+..
T Consensus 201 g~Di~~~S~~K~l~-----~~~g~g~l~~~~~~i~-~~-~~~~~-~~----~~~~~s~~--------~~~~aal~~a~~~ 260 (446)
T 2x3l_A 201 QADYVVQSFHKTLP-----ALTMGSVLYIHKNAPY-RE-NIIEY-LS----YFQTSSPS--------YLIMASLESAAQF 260 (446)
T ss_dssp TCSEEEECHHHHSS-----SCTTCEEEEEETTCTT-HH-HHHHH-HH----HHSCSSCC--------HHHHHHHHHHHHH
T ss_pred CCCEEEECCccccc-----cccccEEEEEcCCcCC-HH-HHHHH-HH----HHcCCCch--------HHHHHHHHHHHHH
Confidence 78999999999874 3447899999877654 10 00000 00 00011111 1111111222333
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCC
Q 001990 863 MGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVP 942 (985)
Q Consensus 863 lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~pv~ 942 (985)
+...|..+..++..+++++++++ ++.+... .++. .+.++++ +.+..++.+.|.++||.+.... .
T Consensus 261 l~~~g~~~~~~~~~~l~~~l~~~---g~~~~~~--~~~~--~l~i~~~------~~~~~~l~~~L~~~GI~v~~~g---~ 324 (446)
T 2x3l_A 261 YKTYDSTLFFAKRAQLIECLENK---GFEMLQV--DDPL--KLLIKYE------GFTGHDIQNWFMNAHIYLELAD---D 324 (446)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHH---TCEEEEC--SSTT--EEEEECT------TSCHHHHHHHHHHTTEEESEEC---S
T ss_pred HHHhCHHHHHHHHHHHHHHHHHc---CCEECcC--CCCe--EEEEEeC------CcCHHHHHHHHHHCCCEEEecC---C
Confidence 33333333445566666777665 4444322 1222 2445553 5678899999999999874111 3
Q ss_pred CEEEEeccCCCCHHhhchHHHHHHHHHHHHH
Q 001990 943 GTLMIEPTESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 943 ~~lris~t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
+.+|++++..+|++|+ +++++|+++.+
T Consensus 325 ~~iRi~~~~~~t~e~i----~l~~aL~~~~~ 351 (446)
T 2x3l_A 325 YQALAILPLWHHDDTY----LFDSLLRKIED 351 (446)
T ss_dssp SCEEEECCCCCTTCCC----CHHHHHHHHHT
T ss_pred CEEEEEeecCCCHHHH----HHHHHHHHHHH
Confidence 6899999998898887 36667776654
No 171
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.78 E-value=1.7e-17 Score=192.82 Aligned_cols=277 Identities=16% Similarity=0.169 Sum_probs=195.5
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001990 206 AQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 206 sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~ 285 (985)
..|..+...++++.+|+++|.+ ...++.+|+.+.++++.++ . +++|+|+++...|+++...++. .|.+++.
T Consensus 104 ~~G~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~~al~~l-~--~~gd~vl~~~~~h~~~~~~~~~----~g~~~~~ 174 (427)
T 2w8t_A 104 LNGTFHDHMEVEQALRDFYGTT--GAIVFSTGYMANLGIISTL-A--GKGEYVILDADSHASIYDGCQQ----GNAEIVR 174 (427)
T ss_dssp TTCCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHH-S--CTTCEEEEETTCCHHHHHHHHH----SCSEEEE
T ss_pred ccCCcHHHHHHHHHHHHHhCCC--ceEEecCcHHHHHHHHHHh-c--CCCCEEEECCcccHHHHHHHHH----cCCeeEE
Confidence 3444566778889999999986 3667888887777665554 2 3789999999999999988753 4777777
Q ss_pred eC---chhhhc-cCC----CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCC---------CCcc
Q 001990 286 SD---LKDIDY-KSG----DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP---------PGEL 347 (985)
Q Consensus 286 ~~---~~~l~~-l~~----~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~---------p~~~ 347 (985)
++ +++|++ +.+ ++++|++.++ |++|.+.|+++|.++|+++|+++++| +.++.+.+.. ....
T Consensus 175 ~~~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~D-ea~~~~~~~~~g~~~~~~~~~~~ 253 (427)
T 2w8t_A 175 FRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVD-EAHSMGFFGPNGRGVYEAQGLEG 253 (427)
T ss_dssp ECTTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEE-CTTTTTTSSTTSCCHHHHTTCTT
T ss_pred eCCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEE-CCccccccCCCCCchHhhcCCCc
Confidence 65 456665 433 7899999887 78999999999999999999999995 3445444321 1123
Q ss_pred cceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHH
Q 001990 348 GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQAL 426 (985)
Q Consensus 348 GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l 426 (985)
++|+++++. |.|+. || |++++++++++.+... .+.|. ..++.|. ...
T Consensus 254 ~~di~~~s~sK~~g~------~g-G~v~~~~~l~~~l~~~----------~~~~~------------~~~~~~~---~~~ 301 (427)
T 2w8t_A 254 QIDFVVGTFSKSVGT------VG-GFVVSNHPKFEAVRLA----------CRPYI------------FTASLPP---SVV 301 (427)
T ss_dssp CCSEEEEESSSTTCS------CC-EEEEECCTTGGGGGGT----------CHHHH------------SSCCCCH---HHH
T ss_pred CCcEEEecchhhhcc------CC-CEEEeCHHHHHHHHHh----------ccccc------------ccCCCCH---HHH
Confidence 689999998 87752 34 8999988877665210 00010 0111121 222
Q ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCC-CcceEEEecCC---HHHHHHHHHHcCceeeee
Q 001990 427 LANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-FFDTVKVKCAD---AHAIASAAYKIEMNLRVV 502 (985)
Q Consensus 427 ~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~~~~~i~~~~---~~~l~~~L~~~Gi~~~~~ 502 (985)
.+..+++ ..+. .++++.++..++.+++++.|+++| +++...+ ....+.+.+++ ..++.++|.++||.+...
T Consensus 302 aa~~~al--~~~~--~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~ 376 (427)
T 2w8t_A 302 ATATTSI--RKLM--TAHEKRERLWSNARALHGGLKAMG-FRLGTETCDSAIVAVMLEDQEQAAMMWQALLDGGLYVNMA 376 (427)
T ss_dssp HHHHHHH--HHHT--SCHHHHHHHHHHHHHHHHHHHHHT-CEESCSSCCSSEEEEEESSHHHHHHHHHHHHHTTEECEEE
T ss_pred HHHHHHH--HHHh--cCHHHHHHHHHHHHHHHHHHHHcC-CcccCCCCCCCEEEEEECCHHHHHHHHHHHHHCCeEEeee
Confidence 2222333 3332 257788899999999999999886 8876323 33345566654 678999999999988653
Q ss_pred c-------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 503 D-------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ~-------~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
. .+.+|++++..+|++|+++++++|..
T Consensus 377 ~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~ 410 (427)
T 2w8t_A 377 RPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQA 410 (427)
T ss_dssp CTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 1 25899999999999999999999974
No 172
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.78 E-value=1.3e-17 Score=191.89 Aligned_cols=303 Identities=17% Similarity=0.092 Sum_probs=190.2
Q ss_pred hcHHHHHHHHHHHHHHHhCC--Cccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEE
Q 001990 628 QGYQEMFNNLGEWLCTITGF--DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~--~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v 704 (985)
+|..++.+.+.+++.+.+|. +... +++++|++++..++.++. .++++|+++.+.|..+...++..|+++
T Consensus 75 ~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~ 146 (407)
T 2zc0_A 75 NGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLI--------DPGDVVITENPSYINTLLAFEQLGAKI 146 (407)
T ss_dssp TCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHTTTCEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhc--------CCCCEEEEeCCChHHHHHHHHHcCCEE
Confidence 35444444445555444484 4444 455555666544433331 367899998876666666677889999
Q ss_pred EEEeCCCCCCCCHHHHHHHHH----hcCCCeEEEE-EEcC-CCccccccCHH---HHHHHHHHcCCEEEEEcccccccc-
Q 001990 705 VSVGTDAKGNINIEELRKAAE----ANRDNLSTLM-VTYP-STHGVYEEGID---EICKIIHDNGGQVYMDGANMNAQV- 774 (985)
Q Consensus 705 ~~v~~~~~g~iDle~L~~~i~----~~~~~t~~Vv-i~~p-n~~G~i~~di~---eI~~la~~~g~lliVD~a~~~~~~- 774 (985)
+.+|.++++ +|+++|+++++ +. +++++|+ +++| |++|.+. |++ +|+++|+++|+++|+|+++.....
T Consensus 147 ~~v~~~~~~-~d~~~l~~~l~~~~~~~-~~~~~v~~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~ 223 (407)
T 2zc0_A 147 EGVPVDNDG-MRVDLLEEKIKELKAKG-QKVKLIYTIPTGQNPMGVTM-SMERRKALLEIASKYDLLIIEDTAYNFMRYE 223 (407)
T ss_dssp EEEEEETTE-ECHHHHHHHHHHHHHTT-CCEEEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTSBSS
T ss_pred EEcccCCCC-CCHHHHHHHHHhhhccc-CCceEEEECCCCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEECCCcccccC
Confidence 999987665 99999999997 32 4788874 5677 5689987 555 999999999999999999853221
Q ss_pred CC--CCCCc---CCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchh
Q 001990 775 GL--TSPGY---IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 775 g~--~~~g~---~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~ 849 (985)
+- ..... .+.++++.+++|+|+ | |.++|++++++++.+.+..... .. ..+++
T Consensus 224 ~~~~~~~~~~~~~~~~i~~~s~sK~~~-~----G~r~G~~~~~~~~~~~~~~~~~------------~~--~~~~~---- 280 (407)
T 2zc0_A 224 GGDIVPLKALDNEGRVIVAGTLSKVLG-T----GFRIGWIIAEGEILKKVLMQKQ------------PI--DFCAP---- 280 (407)
T ss_dssp CSSCCCGGGGCSSCCEEEEEESTTTTC-T----TSCCEEEECCHHHHHHHHHHHT------------TT--TSSSC----
T ss_pred CCCCCChhhcCCCCCEEEEcccccccC-C----CcceEEEecCHHHHHHHHHHHH------------hh--cCCCC----
Confidence 10 11111 234577888899985 2 4568999998776654421100 00 01111
Q ss_pred hhHHHHHHHHHHHhc-h-hhHHHHHHHHHHHHHHHHHHHhcc-CCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHH
Q 001990 850 ALILPISYTYIAMMG-S-KGLTEASKIAILNANYMAKRLEKH-YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 850 ~~~~~~A~a~l~~lg-~-~gl~~~~~~~~~~a~~l~~~L~~~-~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~ 926 (985)
.....++.+++.... . +.+.+..++..++++++.+.|++. ..+.+..+.+.. .+.++++ .+.+..++.+.
T Consensus 281 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~l~~~ 353 (407)
T 2zc0_A 281 AISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGM--FVMFFLP-----EGADGISFANE 353 (407)
T ss_dssp HHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSBSS--EEEEECS-----TTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCCcE--EEEEEcC-----CCCCHHHHHHH
Confidence 111222333333211 1 334455566677888999988762 222221222222 2445554 24678899999
Q ss_pred HHHC-CCccCCCC-C-C---CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 927 LMDY-GFHGPTMS-W-P---VPGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 927 L~e~-Gi~~~~~~-~-p---v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
|.++ ||.+.... + + .++.+|++++.. |++|++ +++++|+++++++
T Consensus 354 l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~---~~~~~l~~~l~~~ 404 (407)
T 2zc0_A 354 LMEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIP---IGIKKLAKLYKEK 404 (407)
T ss_dssp HHHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHH---HHHHHHHHHHHHH
T ss_pred HHHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHH---HHHHHHHHHHHHH
Confidence 9988 99875422 1 1 247899999876 899999 9999999988764
No 173
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.78 E-value=3.1e-17 Score=188.70 Aligned_cols=295 Identities=13% Similarity=0.100 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCCCcHHHHHhcC----------
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPATAAMCG---------- 701 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~-~~Hg~~~~~~~~~G---------- 701 (985)
...++++++++++|.+. .+++++|+++++.++.+++.++..+|..++++||+++ .+|+.........+
T Consensus 82 ~~~~l~~~la~~~~~~~-v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 160 (406)
T 4adb_A 82 PVLRLAKKLIDATFADR-VFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAP 160 (406)
T ss_dssp HHHHHHHHHHHHSSCSE-EEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCS
T ss_pred HHHHHHHHHHhhCCCCe-EEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCC
Confidence 46688999999999874 4667888888877777766554444433447777754 56666555444333
Q ss_pred --cEEEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccc-c--c-cCHHHHHHHHHHcCCEEEEEcccccccc
Q 001990 702 --MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGV-Y--E-EGIDEICKIIHDNGGQVYMDGANMNAQV 774 (985)
Q Consensus 702 --~~v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~-i--~-~di~eI~~la~~~g~lliVD~a~~~~~~ 774 (985)
.++..+|. .|+++|+++++ +++++|+++ | |.+|. + . .++++|+++|++||+++|+|++|. +++
T Consensus 161 ~~~~~~~~~~-----~d~~~l~~~l~---~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~ 230 (406)
T 4adb_A 161 LPADIRHAAY-----NDINSASALID---DSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQT-GVG 230 (406)
T ss_dssp CCSSEEEECT-----TCHHHHHTTCS---TTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTT
T ss_pred CCCCceEeCC-----CcHHHHHHHhc---CCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCC
Confidence 35555665 38999999987 789999988 7 44443 3 1 269999999999999999999985 221
Q ss_pred CCCCC-----CcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchh
Q 001990 775 GLTSP-----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGS 849 (985)
Q Consensus 775 g~~~~-----g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~ 849 (985)
-...+ .....|++++ +|+|+ +|.++|++++++++.+.+.....+ .+ .+. +
T Consensus 231 ~~g~~~~~~~~~~~~d~~t~--sK~~~-----~G~r~G~~~~~~~~~~~~~~~~~~------------~~--~~~----~ 285 (406)
T 4adb_A 231 RTGELYAYMHYGVTPDLLTT--AKALG-----GGFPVGALLATEECARVMTVGTHG------------TT--YGG----N 285 (406)
T ss_dssp TTSSSSHHHHHTCCCSEEEE--CGGGG-----TTSCCEEEEECHHHHHTCCTTSSC------------CS--STT----C
T ss_pred ccchhHHHHhcCCCCCEEEe--chhhc-----CCCCeEEEEEcHHHHhhhccCCcC------------CC--CCC----C
Confidence 11111 1234688865 79985 356799999998877655421100 11 111 2
Q ss_pred hhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc---CCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHH
Q 001990 850 ALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 850 ~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~---~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~ 926 (985)
+..+.++.+.+..+..+ +..++..++++++.+.|++. +......+ .....+.+.+.. ....+..++.+.
T Consensus 286 ~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~g~~~~~~~~~---~~~~~~~~~~~~ 357 (406)
T 4adb_A 286 PLASAVAGKVLELINTP---EMLNGVKQRHDWFVERLNTINHRYGLFSEVR--GLGLLIGCVLNA---DYAGQAKQISQE 357 (406)
T ss_dssp HHHHHHHHHHHHHHSSH---HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE--EETTEEEEEECT---TTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCceEEE--EEEEEEEEEEeC---CcHHHHHHHHHH
Confidence 23334445556655433 44556677888888888762 12111000 001123344431 001257899999
Q ss_pred HHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHHH
Q 001990 927 LMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTTF 977 (985)
Q Consensus 927 L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~~ 977 (985)
|.++||.+.... ++.+|++++..+|++|++ +++++|+++++++.+
T Consensus 358 l~~~gi~v~~~~---~~~iRi~~~~~~~~e~i~---~~~~~l~~~l~~~~~ 402 (406)
T 4adb_A 358 AAKAGVMVLIAG---GNVVRFAPALNVSEEEVT---TGLDRFAAACEHFVS 402 (406)
T ss_dssp HHHTTEECEESS---TTEEEECCCTTCCHHHHH---HHHHHHHHHHHHHHC
T ss_pred HHHCCcEEeecC---CCeEEEECCCCCCHHHHH---HHHHHHHHHHHHHHh
Confidence 999999875332 479999999999999999 999999999987654
No 174
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.78 E-value=4e-18 Score=195.20 Aligned_cols=307 Identities=15% Similarity=0.092 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCCC-
Q 001990 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~~- 712 (985)
..++++.+++++|.+. .+++++|++++..++.+++ ..++++|+++...|..+...++..|++++.++.+++
T Consensus 41 ~~~l~~~la~~~~~~~-~~~~~~gt~al~~~~~~~~-------~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~ 112 (393)
T 1mdo_A 41 NQELEAAFCRLTGNQY-AVAVSSATAGMHIALMALG-------IGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDT 112 (393)
T ss_dssp HHHHHHHHHHHHCCSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHhCCCc-EEEecChHHHHHHHHHHcC-------CCCCCEEEeCCCccHhHHHHHHHCCCEEEEEeccCCc
Confidence 5678899999999875 3566777776654444331 146789999998787777777889999999999865
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCC-CcEEEeCC
Q 001990 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG-ADVCHLNL 791 (985)
Q Consensus 713 g~iDle~L~~~i~~~~~~t~~Vvi~~pn~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g-~Di~~~s~ 791 (985)
+.+|+++|+++++ +++++|++++ ++|.+. |+++|.++|+++|+++++|++|..+..... ..++ .|++++|+
T Consensus 113 ~~~d~~~l~~~l~---~~~~~v~~~~--~~G~~~-~~~~i~~l~~~~~~~li~D~a~~~g~~~~~--~~~~~~d~~~~S~ 184 (393)
T 1mdo_A 113 LMVTPEHIEAAIT---PQTKAIIPVH--YAGAPA-DLDAIYALGERYGIPVIEDAAHATGTSYKG--RHIGARGTAIFSF 184 (393)
T ss_dssp CCBCHHHHHHHCC---TTEEEECCBC--GGGCCC-CHHHHHHHHHHHTCCBCEECTTCTTCEETT--EETTSSSEEEEEC
T ss_pred CCCCHHHHHHhcC---CCceEEEEeC--CCCCcC-CHHHHHHHHHHcCCeEEEECccccCCeECC--eecCCCCeEEEeC
Confidence 6899999999997 6899888875 579887 899999999999999999999864332111 1245 89999999
Q ss_pred c--ccccccCCCCCCcceeeeec-ccccCcCCC-CccccCCCC-CC------CCCCCCCCCcccccchhhhHHHHHHHHH
Q 001990 792 H--KTFCIPHGGGGPGMGPIGVK-KHLAPFLPS-HPVVSTGGI-PA------PEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 792 h--Ktl~~p~g~GGPg~G~l~~~-~~l~~~lpg-~~~g~~~~~-~~------~~~~~~t~~i~s~~~g~~~~~~~A~a~l 860 (985)
| |+++ |+.+|+++++ +++.+.+.. ...+...+. .+ +..+..+...... .....++.+...
T Consensus 185 ~k~K~l~------~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~a~~~~~- 255 (393)
T 1mdo_A 185 HAIKNIT------CAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYN--LPDLNAAIALAQ- 255 (393)
T ss_dssp CTTSSSC------SSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCC--CCHHHHHHHHHH-
T ss_pred CCCCccc------cccceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCC--CCHHHHHHHHHH-
Confidence 9 7662 3467888886 555433210 000110000 00 0000000000000 011111111121
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHhcc-CCeeEcCC-CC-ceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCC
Q 001990 861 AMMGSKGLTEASKIAILNANYMAKRLEKH-YPILFRGV-NG-TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTM 937 (985)
Q Consensus 861 ~~lg~~gl~~~~~~~~~~a~~l~~~L~~~-~~i~~~g~-~~-~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~ 937 (985)
.+++++..++..++++++.+.|++. +.+..... .. ...+.+.+.++. ...+.+..++.+.|.++||.+...
T Consensus 256 ----l~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~l~~~l~~~gi~v~~~ 329 (393)
T 1mdo_A 256 ----LQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDE--ARCGITRDALMASLKTKGIGTGLH 329 (393)
T ss_dssp ----HHTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCH--HHHSSCHHHHHHHHHHTTBCCBCC
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCceeEEEEEEecc--cccccCHHHHHHHHHhCCCCcccc
Confidence 2345566666777889999999873 33211110 00 011123455430 000357889999999999987543
Q ss_pred CCC---------------C-------CCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 938 SWP---------------V-------PGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 938 ~~p---------------v-------~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
..| + ...+|++++..+|++|++ +++++|+++++.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~---~~~~~l~~~~~~ 385 (393)
T 1mdo_A 330 FRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFD---RVITALHQIAGQ 385 (393)
T ss_dssp CCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHH---HHHHHHHHHHC-
T ss_pred cCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHH---HHHHHHHHHHhc
Confidence 222 1 237999999999999999 999999987654
No 175
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.77 E-value=8.9e-17 Score=187.13 Aligned_cols=292 Identities=15% Similarity=0.179 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHH-hcCCCC-CCEEEEcC-CCCCCcHHHHHhcC--------
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHK-ARGDHH-RNVCIIPV-SAHGTNPATAAMCG-------- 701 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~-~~g~~~-~~~Vlv~~-~~Hg~~~~~~~~~G-------- 701 (985)
...++++.+++++|.+. .+++++|++++++++.+++.|.. .+|..+ +++||+++ .+|+.....+...|
T Consensus 108 ~~~~l~~~la~~~g~~~-v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~ 186 (433)
T 1z7d_A 108 PLGICERYLTNLLGYDK-VLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNF 186 (433)
T ss_dssp HHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------
T ss_pred HHHHHHHHHHhhcCCCe-EEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccC
Confidence 45678899999998654 46778899988888777765432 222223 37888765 56776544443333
Q ss_pred ----cEEEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccc---cCHHHHHHHHHHcCCEEEEEccccccc
Q 001990 702 ----MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE---EGIDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 702 ----~~v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~---~di~eI~~la~~~g~lliVD~a~~~~~ 773 (985)
.+++.+|.+ |+++|+++++ .+++++|+++.. +.+|.+. .++++|+++|+++|+++|+|++|. ++
T Consensus 187 ~p~~~~v~~~~~~-----d~~~le~~l~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~ 258 (433)
T 1z7d_A 187 GPFAPQFSKVPYD-----DLEALEEELK--DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-GL 258 (433)
T ss_dssp -----CEEEECTT-----CHHHHHHHHT--STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TT
T ss_pred CCCCCCeEEeCCC-----CHHHHHHHhC--CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCcc-CC
Confidence 345566653 8999999994 267887766533 3578753 269999999999999999999984 33
Q ss_pred cCCCCC---C--cCCCcEEEeCCcccccccCCCCC-CcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccc
Q 001990 774 VGLTSP---G--YIGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 774 ~g~~~~---g--~~g~Di~~~s~hKtl~~p~g~GG-Pg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~ 847 (985)
+-.... . ...+|++++ +|+|+ || ..+|++++++++++.+..... ..| ..
T Consensus 259 g~~g~~~~~~~~~~~~di~t~--sK~l~-----~G~~~~G~v~~~~~~~~~l~~~~~------------~~t--~~---- 313 (433)
T 1z7d_A 259 GRTGKLLCVHHYNVKPDVILL--GKALS-----GGHYPISAVLANDDIMLVIKPGEH------------GST--YG---- 313 (433)
T ss_dssp TTTSSSSGGGGGTCCCSEEEE--CGGGG-----TTSSCCEEEEECHHHHTTCCTTCC------------CCT--TT----
T ss_pred CcCCcchhhHhcCCCCCEEEE--Ccccc-----CCCCCeEEEEECHHHHhhhccccc------------ccc--CC----
Confidence 211111 1 124788754 58874 45 568999999887766542110 011 11
Q ss_pred hhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc---cCCee--EcCCCCceeEEEEEEecCccccCCCCHHH
Q 001990 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---HYPIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPED 922 (985)
Q Consensus 848 g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~---~~~i~--~~g~~~~~~~~~vv~~~~~~~~~g~~~~~ 922 (985)
+++..++++.+.+..+..++ ..++..+++++++++|++ ++.+. ..+ .+. .+.+.+.. .+.+..+
T Consensus 314 ~~~~~~aaa~aal~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-~g~---~~~i~~~~----~~~~~~~ 382 (433)
T 1z7d_A 314 GNPLAASICVEALNVLINEK---LCENAEKLGGPFLENLKRELKDSKIVRDVRG-KGL---LCAIEFKN----ELVNVLD 382 (433)
T ss_dssp TCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHTTCTTEEEEEE-ETT---EEEEEECT----TTCCHHH
T ss_pred CCHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe-eee---EEEEEEcc----ChhHHHH
Confidence 23344455556666654443 344566778888888875 23321 111 111 23445531 0135788
Q ss_pred HHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 923 VAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 923 l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
+.+.|.++||.+.... .+.+|++++..+|++|+| +++++|+++++++
T Consensus 383 ~~~~l~~~Gv~v~~~~---~~~iRi~~~~~~t~e~i~---~~l~~l~~~l~~~ 429 (433)
T 1z7d_A 383 ICLKLKENGLITRDVH---DKTIRLTPPLCITKEQLD---ECTEIIVKTVKFF 429 (433)
T ss_dssp HHHHHHHTTEECCEET---TTEEEECCCTTCCHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHCCeEEecCC---CCEEEEECCcCCCHHHHH---HHHHHHHHHHHHH
Confidence 9999999999875331 478999999999999999 9999999988765
No 176
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.77 E-value=3.5e-18 Score=193.89 Aligned_cols=280 Identities=17% Similarity=0.186 Sum_probs=199.0
Q ss_pred HHHHHHHHHHHH-HHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001990 208 GRLESLLNFQTM-IADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 208 g~l~~i~e~q~~-ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~ 286 (985)
+..+...++++. +|+++|.+ ++.+++|+|.+++.++.++ .. +||+|++++..|+++...++ ..|++++.+
T Consensus 50 ~~~~~~~~l~~~~la~~~~~~--~v~~~~g~t~a~~~~~~~~-~~--~gd~vl~~~~~~~~~~~~~~----~~g~~~~~v 120 (371)
T 2e7j_A 50 IKTPPIHDFIHNQLPKFLGCD--VARVTNGAREAKFAVMHSL-AK--KDAWVVMDENCHYSSYVAAE----RAGLNIALV 120 (371)
T ss_dssp ---CCHHHHHHTHHHHHTTSS--EEEEESSHHHHHHHHHHHH-CC--TTCEEEEETTCCHHHHHHHH----HTTCEEEEE
T ss_pred hHHHHHHHHHHHHHHHHcCCC--EEEEeCChHHHHHHHHHHH-hC--CCCEEEEccCcchHHHHHHH----HcCCeEEEe
Confidence 334556678899 99999988 7878889898888877765 23 78999999999999988864 358888888
Q ss_pred C--ch--------hhhc-cC-----CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCC-CCCccc
Q 001990 287 D--LK--------DIDY-KS-----GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGELG 348 (985)
Q Consensus 287 ~--~~--------~l~~-l~-----~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~-~p~~~G 348 (985)
+ .+ +|++ ++ +++++|++.+| |++|.+.|+++|.++|+++|+++++|. ..+.+... +..++|
T Consensus 121 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~-a~~~~~~~~~~~~~~ 199 (371)
T 2e7j_A 121 PKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNG-AYAIGRMPVSLKEIG 199 (371)
T ss_dssp CCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEEC-TTTBTTBCCCHHHHT
T ss_pred ecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEEC-ccccCCCCCChhhcC
Confidence 7 43 4554 54 68999999998 789999999999999999999999953 45555442 335678
Q ss_pred ceEEEecC-ccccccCCCCCCceEEEEEchhhHhc-CCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHH
Q 001990 349 ADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRM-MPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQAL 426 (985)
Q Consensus 349 aDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~-lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l 426 (985)
+|++++|. |+|++| +++|++++++++++. +.....|. . +....+.+|+|. ...
T Consensus 200 ~di~~~s~sK~~~~~-----~~~G~~~~~~~~~~~~~~~~~~~~------~-----------~~~~~~~~~~~~---~~~ 254 (371)
T 2e7j_A 200 ADFIVGSGHKSMAAS-----GPIGVMGMKEEWAEIVLRRSEKYK------N-----------KEVELLGCTARG---ATI 254 (371)
T ss_dssp CSEEEEEHHHHSSCC-----SSCEEEEECTTTTTTTTCBCSSCT------T-----------SBGGGTTCCCCS---HHH
T ss_pred CCEEEecCCcCCCCC-----CCcEEEEEechhhhhhccccccCc------c-----------cccccccCCcCH---HHH
Confidence 99999998 878643 357999999887776 53211110 0 000112345554 233
Q ss_pred HHHHHHHHHHHcCcchHHHHHHHH--HHHHHHHHHHHhcCCCEEEcCCC--CcceEEEecCCHHHHHHHHHHcCceeeee
Q 001990 427 LANMAAMYAVYHGPEGLKTIAQRV--HGLAGTFALGLKKLGTVEVQGLP--FFDTVKVKCADAHAIASAAYKIEMNLRVV 502 (985)
Q Consensus 427 ~a~~aa~y~~~~g~~Gl~~i~~~~--~~~a~~l~~~L~~~g~~~~~~~~--~~~~~~i~~~~~~~l~~~L~~~Gi~~~~~ 502 (985)
.++.+++ .++.. ++.++. .++++++++.|+++| +++..+. ...-+.+.+++..++.+.|.++||.+...
T Consensus 255 ~a~~~~l--~~~~~----~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 327 (371)
T 2e7j_A 255 ITLMASF--PHVRE----RIKRWDEEVEKARRFAAEMEKLG-IKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRE 327 (371)
T ss_dssp HHHHHHH--HHHHH----HGGGHHHHHHHHHHHHHHHHHTT-CEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHH
T ss_pred HHHHHHH--HHHHH----HHHHHHHHHHHHHHHHHHHHHcC-cEEecCCCccCceEEEECCCHHHHHHHHHHCCEEEEec
Confidence 3443443 22211 566777 888999999999886 8877432 23335555434677888888889976431
Q ss_pred ---------cCCeEE-EEeccC-CCHHHHHHHHHHHhC
Q 001990 503 ---------DSNTVT-ASFDET-TTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ---------~~~~lr-is~~~~-~t~edid~ll~~l~~ 529 (985)
.++.+| ++++.+ +|++|+++++++|..
T Consensus 328 ~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~ 365 (371)
T 2e7j_A 328 LKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKE 365 (371)
T ss_dssp HHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHH
T ss_pred cccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHH
Confidence 157899 999998 999999999999973
No 177
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.77 E-value=2.2e-17 Score=189.55 Aligned_cols=302 Identities=15% Similarity=0.081 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHHhC--CCccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEe
Q 001990 632 EMFNNLGEWLCTITG--FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 632 ~~~~el~~~la~l~G--~~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~ 708 (985)
++.+.+.+++++.+| .+... +++++|++++..++.++. .++++|+++.+.|..+...+...|.+++.+|
T Consensus 70 ~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~ 141 (399)
T 1c7n_A 70 EYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT--------KPGDGVIIITPVYYPFFMAIKNQERKIIECE 141 (399)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC--------CTTCEEEECSSCCTHHHHHHHTTTCEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhc--------CCCCEEEEcCCCcHhHHHHHHHcCCEEEecc
Confidence 445555556666668 44443 455666666544433321 3678999988877777667778899999998
Q ss_pred CC-CCC--CCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccc-cC--CCC
Q 001990 709 TD-AKG--NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQ-VG--LTS 778 (985)
Q Consensus 709 ~~-~~g--~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~d---i~eI~~la~~~g~lliVD~a~~~~~-~g--~~~ 778 (985)
.+ ++| .+|+++|++++++ +++++|++++| |++|.+. + +++|+++|+++|+++|+|++|.... .+ ...
T Consensus 142 ~~~~~g~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~ 218 (399)
T 1c7n_A 142 LLEKDGYYTIDFQKLEKLSKD--KNNKALLFCSPHNPVGRVW-KKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTV 218 (399)
T ss_dssp CEEETTEEECCHHHHHHHHTC--TTEEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCC
T ss_pred cccCCCCEEEcHHHHHHHhcc--CCCcEEEEcCCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCccc
Confidence 85 333 5899999999962 57899999998 5799986 5 9999999999999999999985321 11 111
Q ss_pred CCc-----CCCcEEEeCCcccccccCCCCCCcceeeeec-ccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhH
Q 001990 779 PGY-----IGADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 779 ~g~-----~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~-~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~ 852 (985)
... .+.++++.|+||+|+. +|.++|+++++ +++.+.+...... ..+++. +...
T Consensus 219 ~~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~l~~~~~~-----------~~~~~~------~~~~ 277 (399)
T 1c7n_A 219 FQSIDEQLADKTITFTAPSKTFNI----AGMGMSNIIIKNPDIRERFTKSRDA-----------TSGMPF------TTLG 277 (399)
T ss_dssp GGGSCHHHHTTEEEEECSHHHHTC----GGGCCEEEECCCHHHHHHHHHHHHH-----------TTCCCC------CHHH
T ss_pred HHHcCccccCcEEEEEeChhhccc----cchheEEEEECCHHHHHHHHHHHhh-----------cccCCC------CHHH
Confidence 111 2446888999999853 35678999987 4565543211000 000011 1112
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHH-HC
Q 001990 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DY 930 (985)
Q Consensus 853 ~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~-e~ 930 (985)
..++.+.+.. +.+.+.+..++..++++++.+.|++ ...+....+.+..+ +.++++. .+.+..++.+.|. ++
T Consensus 278 ~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~l~~~~ 350 (399)
T 1c7n_A 278 YKACEICYKE-CGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYL--QWIDFRA----LKMDHKAMEEFMIHKA 350 (399)
T ss_dssp HHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSE--EEEECGG----GCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCCceEE--EEEEccc----CCCCHHHHHHHHHHhC
Confidence 2222333432 3455666667778888999999876 22332222222221 2355541 1357788999997 68
Q ss_pred CCccCCCC-CC--CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHHH
Q 001990 931 GFHGPTMS-WP--VPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTTF 977 (985)
Q Consensus 931 Gi~~~~~~-~p--v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~~ 977 (985)
||.+.... +. .++.+|++++.. +++++ ++++.|+++++++++
T Consensus 351 gi~v~~g~~~~~~~~~~iRis~~~~--~~~l~---~~l~~l~~~l~~~~~ 395 (399)
T 1c7n_A 351 QIFFDEGYIFGDGGIGFERINLAAP--SSVIQ---ESLERLNKALKDLKN 395 (399)
T ss_dssp CCCCEEGGGGCGGGTTEEEEECCSC--HHHHH---HHHHHHHHHHHHHC-
T ss_pred CEEEeCccccCCCCCCeEEEEeccC--HHHHH---HHHHHHHHHHHHHHh
Confidence 99874321 21 247899999854 78899 999999998877643
No 178
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.77 E-value=1.5e-17 Score=193.47 Aligned_cols=301 Identities=14% Similarity=0.107 Sum_probs=185.4
Q ss_pred HHHHHHHHHhC--------CCccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHH-hcCcEEE
Q 001990 636 NLGEWLCTITG--------FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA-MCGMKIV 705 (985)
Q Consensus 636 el~~~la~l~G--------~~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~-~~G~~v~ 705 (985)
++++.++++++ .+... +++++|++++..++.++. .++++|+++.+.|+.+...+. ..|.+++
T Consensus 90 ~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~--------~~gd~vl~~~p~~~~~~~~~~~~~g~~~~ 161 (435)
T 3piu_A 90 AFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA--------DPGEAVLIPTPYYPGFDRDLKWRTGVEIV 161 (435)
T ss_dssp HHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC--------CTTCEEEEEESCCTTHHHHTTTTTCCEEE
T ss_pred HHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhc--------CCCCeEEECCCccccHHHHHHHhcCCEEE
Confidence 45555555554 34433 556666666654444332 367899999988877766666 6899999
Q ss_pred EEeCCCC--CCCCHHHHHHHHHhc---CCCeEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cCC
Q 001990 706 SVGTDAK--GNINIEELRKAAEAN---RDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VGL 776 (985)
Q Consensus 706 ~v~~~~~--g~iDle~L~~~i~~~---~~~t~~Vvi~~p-n~~G~i~--~di~eI~~la~~~g~lliVD~a~~~~~-~g~ 776 (985)
.++++++ +.+|+++|+++++++ ..++++|++++| |++|.+. .++++|+++|+++|+++++|++|.... .+-
T Consensus 162 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~ 241 (435)
T 3piu_A 162 PIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP 241 (435)
T ss_dssp EEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS
T ss_pred EeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC
Confidence 9998754 458999999999742 238999999999 5789885 247999999999999999999985321 111
Q ss_pred --CCC----CcCCC---------cEEEeCCcccccccCCCCCCcceeeeec-ccccCcCCCCccccCCCCCCCCCCCCCC
Q 001990 777 --TSP----GYIGA---------DVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLG 840 (985)
Q Consensus 777 --~~~----g~~g~---------Di~~~s~hKtl~~p~g~GGPg~G~l~~~-~~l~~~lpg~~~g~~~~~~~~~~~~~t~ 840 (985)
... .+.++ .+++.++||+|+. +|.++|+++++ +.+...+... . .+.
T Consensus 242 ~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~--~------------~~~ 303 (435)
T 3piu_A 242 SFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGL----PGFRVGAIYSNDDMVVAAATKM--S------------SFG 303 (435)
T ss_dssp CCCCHHHHHHC-------CGGGGEEEEEESSSSSCC----GGGCEEEEEESCHHHHHHHHHH--G------------GGS
T ss_pred CCcCHHHhccccccccccCCCCCEEEEEeeecccCC----CceeEEEEEeCCHHHHHHHHHH--h------------hcC
Confidence 000 01112 2778899999853 46778999885 4444332100 0 000
Q ss_pred CcccccchhhhHHHHHHHHHHHhc--hhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCC
Q 001990 841 TIAAAPWGSALILPISYTYIAMMG--SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAG 917 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~A~a~l~~lg--~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g 917 (985)
..+ .....++.+++.... .+.+.+..++..++.+++.+.|++ ++.+. .+.+..+ +.++++.......
T Consensus 304 ~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~g~~--~~~~l~~~~~~~~ 373 (435)
T 3piu_A 304 LVS------SQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCL--NGNAGLF--CWVDMRHLLRSNT 373 (435)
T ss_dssp CCC------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEC--CCCSSSE--EEEECGGGSSSSS
T ss_pred CCC------HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--CCCeeEE--EEEEcccccccCC
Confidence 111 111111222232111 223445556677888899999987 44332 2222122 3455541100000
Q ss_pred -CCHHHHHHHHHHC-CCccCCCC-C--CCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHH
Q 001990 918 -IEPEDVAKRLMDY-GFHGPTMS-W--PVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 918 -~~~~~l~~~L~e~-Gi~~~~~~-~--pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
.+..++.++|.++ ||.+.... + ..++.+|++++.. |++||+ ++++.|+++++++.
T Consensus 374 ~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~-~~e~i~---~~l~~l~~~l~~~~ 433 (435)
T 3piu_A 374 FEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANL-PERTLD---LAMQRLKAFVGEYY 433 (435)
T ss_dssp HHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSS-CHHHHH---HHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCC-CHHHHH---HHHHHHHHHHHHHh
Confidence 0345788888777 99874321 1 1358899999665 999999 99999999887653
No 179
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.77 E-value=2.9e-17 Score=189.45 Aligned_cols=284 Identities=16% Similarity=0.115 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHH----HHHhcCcEEEEEe
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVG 708 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~----~~~~~G~~v~~v~ 708 (985)
...++++.+++++|.+. .+.+++|++++..++.++. .++++||++...|+.+.. .++..|++++.++
T Consensus 63 ~~~~l~~~ia~~~g~~~-~i~~~~g~~ai~~~~~~l~--------~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 133 (404)
T 1e5e_A 63 TVSNLEGKIAFLEKTEA-CVATSSGMGAIAATVLTIL--------KAGDHLISDECLYGCTHALFEHALTKFGIQVDFIN 133 (404)
T ss_dssp HHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHC--------CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHhCCCc-EEEeCChHHHHHHHHHHHh--------CCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEEC
Confidence 46689999999999874 4667777766544433321 467899999988877666 5677899999998
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHH-cCCEEEEEccccccccCCCCCCcCCCcE
Q 001990 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHD-NGGQVYMDGANMNAQVGLTSPGYIGADV 786 (985)
Q Consensus 709 ~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~-~g~lliVD~a~~~~~~g~~~~g~~g~Di 786 (985)
.+ |+++|+++++ +++++|++++| |++|.+. |+++|+++|++ +|+++++|++|.... +..|..++.|+
T Consensus 134 ~~-----d~~~l~~~i~---~~t~~v~l~~p~NptG~v~-~l~~i~~la~~~~~~~li~De~~~~~~--~~~~~~~~~di 202 (404)
T 1e5e_A 134 TA-----IPGEVKKHMK---PNTKIVYFETPANPTLKII-DMERVCKDAHSQEGVLVIADNTFCSPM--ITNPVDFGVDV 202 (404)
T ss_dssp TT-----STTHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHTSTTCEEEEECTTTCTT--TCCGGGGTCSE
T ss_pred CC-----CHHHHHHhcC---CCCcEEEEECCCCCCCccc-CHHHHHHHHHhhcCCEEEEECCCchhh--hCCccccCCEE
Confidence 75 8899999997 78999999999 5799998 89999999999 999999999986432 22344678999
Q ss_pred EEeCCcccccccCCCCCCc-ceeeeecccccC-cCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhc
Q 001990 787 CHLNLHKTFCIPHGGGGPG-MGPIGVKKHLAP-FLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 787 ~~~s~hKtl~~p~g~GGPg-~G~l~~~~~l~~-~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg 864 (985)
++.|+||+|+.| |.+ +|++++++++++ .+.....++ .+ ... + +. .+++.+..+.
T Consensus 203 ~~~S~sK~~~~~----g~ri~G~~~~~~~~~~~~l~~~~~~~----------~g-~~~--~----~~---~~~~~~~~l~ 258 (404)
T 1e5e_A 203 VVHSATKYINGH----TDVVAGLICGKADLLQQIRMVGIKDI----------TG-SVI--S----PH---DAWLITRGLS 258 (404)
T ss_dssp EEEETTTTTTCS----SCCCCEEEEECHHHHHHHHHTCCCCC----------CC-CCC--C----HH---HHHHHHHHHT
T ss_pred EEEcCccccCCC----CCCeEEEEEECHHHHHHHHHHHHHhC----------CC-CCC--C----HH---HHHHHHHhHh
Confidence 999999999532 233 499999877654 432111000 00 111 1 11 1222223332
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccCC---eeEcCCC------------CceeEEEEEEecCccccCCCCHHHHHHHHHH
Q 001990 865 SKGLTEASKIAILNANYMAKRLEKHYP---ILFRGVN------------GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 865 ~~gl~~~~~~~~~~a~~l~~~L~~~~~---i~~~g~~------------~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e 929 (985)
.+....++...+++++.+.|++... +.+++-. ....+.+.++++ + ...++.+.|.+
T Consensus 259 --~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~------~-~~~~~~~~l~~ 329 (404)
T 1e5e_A 259 --TLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILK------S-GFEGAKKLLDN 329 (404)
T ss_dssp --THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEET------T-HHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeC------C-CHHHHHHHHHh
Confidence 2333444556677777777765211 1111100 001233455553 1 13456666777
Q ss_pred CCCccCCCCC---------C-----------------C-CCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHH
Q 001990 930 YGFHGPTMSW---------P-----------------V-PGTLMIEPTESESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 930 ~Gi~~~~~~~---------p-----------------v-~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
.|+.+...++ | + ++.+|+|++. ||++ +++++|+++++.+.
T Consensus 330 ~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~---~li~~l~~al~~~~ 396 (404)
T 1e5e_A 330 LKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDAD---ELIADFKQGLDALL 396 (404)
T ss_dssp CSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHH---HHHHHHHHHHHHHH
T ss_pred CCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHH---HHHHHHHHHHHHHH
Confidence 7875432211 0 1 4789999976 8888 99999998877543
No 180
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.77 E-value=6.9e-17 Score=185.05 Aligned_cols=287 Identities=14% Similarity=0.161 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHH-HhcCC-CCCCEEEEcCC-CCCCcHHHHHhcC--------
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYH-KARGD-HHRNVCIIPVS-AHGTNPATAAMCG-------- 701 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~-~~~g~-~~~~~Vlv~~~-~Hg~~~~~~~~~G-------- 701 (985)
...++++++++++|.+. .+++++|+++++.++.+++.+. ..+|. .++++||++.. +|+.........+
T Consensus 79 ~~~~l~~~la~~~g~~~-v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (392)
T 3ruy_A 79 QLGPWYEKVAKLTNKEM-VLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGF 157 (392)
T ss_dssp THHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTC
T ss_pred HHHHHHHHHHHhcCCCE-EEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhcccc
Confidence 35688999999999544 4677888888877666655431 12222 13568888554 4565554443322
Q ss_pred ----cEEEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEcccc-c
Q 001990 702 ----MKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANM-N 771 (985)
Q Consensus 702 ----~~v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~d----i~eI~~la~~~g~lliVD~a~~-~ 771 (985)
.++..++.+ |+++|+++++ +++++|++++| |++|.+. | +++|+++|+++|+++|+|++|. .
T Consensus 158 ~~~~~~~~~~~~~-----d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~~~~~l~~i~~l~~~~~~~li~De~~~~~ 228 (392)
T 3ruy_A 158 GPMLPGIIVIPYG-----DLEALKAAIT---PNTAAFILEPIQGEAGINI-PPAGFLKEALEVCKKENVLFVADEIQTGL 228 (392)
T ss_dssp CSCCSSEEEECTT-----CHHHHHHHCC---TTEEEEEECSSBSTTTSBC-CCTTHHHHHHHHHHTTTCEEEEECTTTTT
T ss_pred CCCCCCCeeeCcc-----cHHHHHHHhc---cCeEEEEEeCccCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEeechhCC
Confidence 135555543 8999999997 78999999988 5799997 6 9999999999999999999984 1
Q ss_pred cccCC-CCCC--cCCCcEEEeCCcccccccCCCCC-CcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccc
Q 001990 772 AQVGL-TSPG--YIGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 772 ~~~g~-~~~g--~~g~Di~~~s~hKtl~~p~g~GG-Pg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~ 847 (985)
+..+. .... ....|++++| |+++ || .++|++++++++.+.+.....+ . +.+.
T Consensus 229 ~~~g~~~~~~~~~~~~d~~~~S--K~l~-----gG~~~~G~~~~~~~~~~~~~~~~~~------------~--~~~~--- 284 (392)
T 3ruy_A 229 GRTGKVFACDWDNVTPDMYILG--KALG-----GGVFPISCAAANRDILGVFEPGSHG------------S--TFGG--- 284 (392)
T ss_dssp TTTSSSSGGGGGTCCCSEEEEC--GGGG-----TTTSCCEEEEECHHHHTTCCTTSSC------------C--SSTT---
T ss_pred CccccchhhhccCCCCCEEEEc--hhhh-----CChhhhEEEEECHHHHhhhccCCcC------------C--CCCC---
Confidence 11111 0011 2346888774 8763 34 6789999998877665432110 0 1111
Q ss_pred hhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHH
Q 001990 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 848 g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~ 926 (985)
+...+.++.+.+..+..+ +..++..++++++.+.|++ +.......+ +..+.+.+.++ + +..++.+.
T Consensus 285 -~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~g~~~~~~~~------~-~~~~l~~~ 351 (392)
T 3ruy_A 285 -NPLACAVSIAALEVLEEE---KLTERSLQLGEKLVGQLKEIDNPMITEVR--GKGLFIGIELN------E-PARPYCEQ 351 (392)
T ss_dssp -CHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHTTCCCTTEEEEE--EETTEEEEEES------S-CSHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHhcCCCceEEE--eeeeEEEEEEc------c-hHHHHHHH
Confidence 223333444555544332 3455677888999999987 222211100 01112334443 2 56789999
Q ss_pred HHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHH
Q 001990 927 LMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLT 972 (985)
Q Consensus 927 L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~ 972 (985)
|.++||.+.... ++.+|++++..+|++|++ +++++|++++
T Consensus 352 l~~~gi~v~~~~---~~~iRi~~~~~~~~~~i~---~~~~~l~~~l 391 (392)
T 3ruy_A 352 LKAAGLLCKETH---ENVIRIAPPLVISEEDLE---WAFQKIKAVL 391 (392)
T ss_dssp HHTTTEECCCBT---TTEEEECCCTTCCHHHHH---HHHHHHHHHH
T ss_pred HHHCCcEEecCC---CCEEEEECCCCCCHHHHH---HHHHHHHHHh
Confidence 999999986432 478999999999999999 9999998864
No 181
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.77 E-value=1.3e-17 Score=193.38 Aligned_cols=304 Identities=15% Similarity=0.101 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCC-C
Q 001990 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA-K 712 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~-~ 712 (985)
..++++.+++++|.+.. +++++|++++..++.++ .++++|+++...|..+...+...|++++.+++++ +
T Consensus 54 ~~~l~~~la~~~~~~~v-~~~~ggt~al~~~l~~l---------~~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~~ 123 (424)
T 2po3_A 54 VREFEERVAGLAGVRHA-VATCNATAGLQLLAHAA---------GLTGEVIMPSMTFAATPHALRWIGLTPVFADIDPDT 123 (424)
T ss_dssp HHHHHHHHHHHHTSSEE-EEESCHHHHHHHHHHHH---------TCCSEEEEESSSCTHHHHHHHHTTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHhCCCeE-EEeCCHHHHHHHHHHHc---------CCCCEEEECCCccHHHHHHHHHcCCEEEEEecCCCc
Confidence 56788999999998753 66677777665444433 1358899999888877777888999999999986 5
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-CCCcCCCcEEEeCC
Q 001990 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-SPGYIGADVCHLNL 791 (985)
Q Consensus 713 g~iDle~L~~~i~~~~~~t~~Vvi~~pn~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~-~~g~~g~Di~~~s~ 791 (985)
+.+|+++|+++++ +++++|++++ ++|... |+++|+++|+++|+++|+|++|..+...-. ..+.+ .|++++|+
T Consensus 124 ~~~d~~~l~~~i~---~~~~~v~~~~--~tG~~~-~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~~-~di~~~S~ 196 (424)
T 2po3_A 124 GNLDPDQVAAAVT---PRTSAVVGVH--LWGRPC-AADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSL-GDAEVFSF 196 (424)
T ss_dssp SSBCHHHHGGGCC---TTEEEEEEEC--GGGCCC-CHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SSEEEEEC
T ss_pred CCcCHHHHHHhhC---cCCcEEEEEC--CCCCcC-CHHHHHHHHHHcCCEEEEECccccCCeECCeecccc-cCEEEEeC
Confidence 7899999999887 6899998875 579887 899999999999999999999864332101 11222 58999998
Q ss_pred cccccccCCCCCCcceeeeec-ccccCcCCCCc-cccCCCCCCCCC-CCCCCCcccccchhhhHHHHHHHHHHHhchhhH
Q 001990 792 HKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHP-VVSTGGIPAPEK-SQPLGTIAAAPWGSALILPISYTYIAMMGSKGL 868 (985)
Q Consensus 792 hKtl~~p~g~GGPg~G~l~~~-~~l~~~lpg~~-~g~~~~~~~~~~-~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl 868 (985)
||+.+ ++|+++|+++++ +++.+.+.... .+.... +.. ..+. +... ....+ ++.+. ..+++
T Consensus 197 sk~K~----l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~~---~~~~~~g~-~~~~----~~~~a---a~~l~--~~~~~ 259 (424)
T 2po3_A 197 HATKA----VNAFEGGAVVTDDADLAARIRALHNFGFDLP---GGSPAGGT-NAKM----SEAAA---AMGLT--SLDAF 259 (424)
T ss_dssp CTTSS----SCCSSCEEEEESCHHHHHHHHHHHBTTTTCT---TCCTTCCC-BCCC----CHHHH---HHHHH--HHHHH
T ss_pred CCCCC----ccCCCCeEEEeCCHHHHHHHHHHHhcCcccc---ccccccCc-CCCc----CHHHH---HHHHH--HHHHH
Confidence 84432 244678999888 56544331100 000000 000 0000 0000 11111 12122 12445
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCeeEcC-CCC--ceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC-CC---
Q 001990 869 TEASKIAILNANYMAKRLEKHYPILFRG-VNG--TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW-PV--- 941 (985)
Q Consensus 869 ~~~~~~~~~~a~~l~~~L~~~~~i~~~g-~~~--~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~-pv--- 941 (985)
.+..++..++++++.+.|++...+.+.. +.+ ..+..+.+.++. ...+.+..++.+.|.++||.+..... +.
T Consensus 260 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~ 337 (424)
T 2po3_A 260 PEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDE--ATTGIHRDLVMEVLKAEGVHTRAYFSPGCHEL 337 (424)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECH--HHHSSCHHHHHHHHHHTTEECBCTTCSCGGGS
T ss_pred HHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECC--ccchhhHHHHHHHHHHCCCceecccCCccccc
Confidence 5666677778888888887632332222 111 111223344430 00035678999999999998754211 10
Q ss_pred -----------C-------CEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHH
Q 001990 942 -----------P-------GTLMIEPTESESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 942 -----------~-------~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
+ ..++++++..+|++|++ +++++|++++++..
T Consensus 338 ~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~---~~~~~L~~~~~~~~ 387 (424)
T 2po3_A 338 EPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIR---RVADLLRLCATRGR 387 (424)
T ss_dssp TTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHH---HHHHHHHHHHHHHH
T ss_pred hhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHH---HHHHHHHHHHhhhH
Confidence 1 12778777999999999 99999999876543
No 182
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.77 E-value=2e-17 Score=188.42 Aligned_cols=320 Identities=12% Similarity=0.031 Sum_probs=208.3
Q ss_pred CCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHHHHHHHHHhhCCC----CcceeeccchHHHHHHHHHH
Q 001990 172 GMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLP----MSNASLLDEGTAAAEAMAMC 247 (985)
Q Consensus 172 G~g~~~~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g~~----~~~~sl~~~~ta~~ea~~~a 247 (985)
+.| |..+++.+.+++.+. ...+ |.|.. .....++++.++++++.. +.++.+++|+|.+++.++.+
T Consensus 10 ~p~--p~~~~~~v~~a~~~~---~~~~--~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~ 78 (385)
T 2bkw_A 10 IPG--PIILSGAVQKALDVP---SLGH--TSPEF----VSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASN 78 (385)
T ss_dssp SSS--SCCCCHHHHHTTSCC---CCCT--TSHHH----HHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHH
T ss_pred cCC--CcCchHHHHHHHhcc---cccc--CCHHH----HHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHH
Confidence 445 445667776454332 2221 23332 233445677888887764 45788889999998888776
Q ss_pred hhhhcCCCCEEEEcCCCC--hhHHHHHHHhhcCCCeEEEEeCc---------hhhhc-cCC-CEeEEEEEcC-CCCeeec
Q 001990 248 NNIQKGKKKTFIIASNCH--PQTIDICITRADGFDIKVVVSDL---------KDIDY-KSG-DVCGVLVQYP-GTEGEVL 313 (985)
Q Consensus 248 ~~~~~~~g~~Vlv~~~~h--~s~~~~~~~~a~~~gi~v~~~~~---------~~l~~-l~~-~t~~V~v~~p-n~~G~i~ 313 (985)
+....++||+|++.+..+ .++...+ +..|++++.++. ++|++ +++ ++++|++++| |.+|.+.
T Consensus 79 ~~~~~~~gd~vlv~~~~~~~~~~~~~~----~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 154 (385)
T 2bkw_A 79 FILSKAPNKNVLVVSTGTFSDRFADCL----RSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLS 154 (385)
T ss_dssp HSCTTCSCCEEEEECSSHHHHHHHHHH----HHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEEC
T ss_pred HhccCCCCCeEEEEcCCcchHHHHHHH----HHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEc
Confidence 531113789998875533 3322333 346888887765 24444 554 7899999987 7899999
Q ss_pred cHHHHHHHHHhC--CcEEEEEeccccccCCC-CCCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHh-cC-----
Q 001990 314 DYGDFIKNAHAN--GVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKR-MM----- 383 (985)
Q Consensus 314 dl~~I~~~a~~~--galliV~a~~~alg~l~-~p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~-~l----- 383 (985)
|+++|.++||++ |+++++| +..+.+... +..++|+|++++|+ |++++ +||+|++++++++++ .+
T Consensus 155 ~l~~i~~~~~~~~~~~~li~D-~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~-----~~G~G~~~~~~~~~~~~l~~~~~ 228 (385)
T 2bkw_A 155 DLKAISQAIKQTSPETFFVVD-AVCSIGCEEFEFDEWGVDFALTASQKAIGA-----PAGLSISLCSSRFMDYALNDSKN 228 (385)
T ss_dssp CHHHHHHHHHHHCTTSEEEEE-CTTTTTTSCCCTTTTTCSEEEEESSSTTCC-----CSCEEEEEECHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhCCCCEEEEE-CccccCCccccccccCceEEEecCcccccc-----CCcceEEEEcHHHHHHHHhhccC
Confidence 999999999999 9999995 344555432 34568999999998 76753 356799999998876 55
Q ss_pred -CCceeeeeecCCCCcceEEecccccccccccc------cCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHH
Q 001990 384 -PGRIVGVSIDSSGKPALRVAMQTREQHIRRDK------ATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGT 456 (985)
Q Consensus 384 -p~~~vG~s~d~~g~~~~~l~l~tre~~~rre~------atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~ 456 (985)
+++..|. .. ..+ +....+.+. +|.|+ ....++.+++ .++...|++++.++..+++++
T Consensus 229 ~~~~~~~~------~~---~~~--~~~~~~~~~~~~~~~~~~~~---~~~~a~~~al--~~~~~~~~~~~~~~~~~~~~~ 292 (385)
T 2bkw_A 229 GHVHGYFS------SL---RRW--TPIMENYEAGKGAYFATPPV---QLINSLDVAL--KEILEEGLHKRWDLHREMSDW 292 (385)
T ss_dssp CCCSCSTT------CH---HHH--HHHHHHHHTTCCCCSSCCCH---HHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCCceee------cH---HHH--hhHHHhhhccCCCCCCCCCH---HHHHHHHHHH--HHHHHccHHHHHHHHHHHHHH
Confidence 2221110 00 000 000001121 23333 3333444444 444445788999999999999
Q ss_pred HHHHH-hcCCCEEEcC-CC----CcceEEEecCCHHHHHHHHHHcCceeeee-----cCCeEEEE-ecc---CCCHHHHH
Q 001990 457 FALGL-KKLGTVEVQG-LP----FFDTVKVKCADAHAIASAAYKIEMNLRVV-----DSNTVTAS-FDE---TTTLEDVD 521 (985)
Q Consensus 457 l~~~L-~~~g~~~~~~-~~----~~~~~~i~~~~~~~l~~~L~~~Gi~~~~~-----~~~~lris-~~~---~~t~edid 521 (985)
+.+.| +++| +++.. .+ ....+.+..++..++.++|.++||.++.. .++.+|+| +.. .+|++|++
T Consensus 293 l~~~L~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~ 371 (385)
T 2bkw_A 293 FKDSLVNGLQ-LTSVSRYPSNMSAHGLTAVYVADPPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMK 371 (385)
T ss_dssp HHHHHHTTTC-CEESSCSSSTTBCSSCEEEECSCHHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHH
T ss_pred HHHHHHHhcC-ceecccCcccccCCceEEEecCCHHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHH
Confidence 99999 8886 88874 21 23346666665778999999999988642 24789999 552 57999999
Q ss_pred HHHHHHhC
Q 001990 522 KLFIVFAG 529 (985)
Q Consensus 522 ~ll~~l~~ 529 (985)
+++++|..
T Consensus 372 ~~~~~l~~ 379 (385)
T 2bkw_A 372 NCFDLIKL 379 (385)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999974
No 183
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.77 E-value=7.3e-17 Score=182.87 Aligned_cols=297 Identities=13% Similarity=0.111 Sum_probs=206.5
Q ss_pred CCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhh
Q 001990 172 GMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ 251 (985)
Q Consensus 172 G~g~~~~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~ 251 (985)
+.|..+...|+.+.+++.+.-..+..|.+.+ + .++++.+|+++|.+..++.+++|+|.++++++.++. .
T Consensus 36 ~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~-----~-----~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l~-~ 104 (365)
T 3get_A 36 ASNENPFGTPPKAIECLRQNANKAHLYPDDS-----M-----IELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKL-N 104 (365)
T ss_dssp SSCCCTTCSCHHHHHHHHHHGGGTTSCCCTT-----C-----HHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC-C
T ss_pred cCCCCCCCCCHHHHHHHHHHHHhhccCCCCC-----h-----HHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHHh-C
Confidence 4444444466666555554322233343211 1 267889999999988899999999999888776652 2
Q ss_pred cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHH
Q 001990 252 KGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKN 321 (985)
Q Consensus 252 ~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~--------~~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~ 321 (985)
+||+|+++...|+++...++. .|.+++.++. +++++ +++++++|++++| |.+|.+.|++++.++
T Consensus 105 --~gd~vl~~~~~~~~~~~~~~~----~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l 178 (365)
T 3get_A 105 --SKNAFLQAGVTFAMYEIYAKQ----CGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCLPNNPLGECLDASEATEF 178 (365)
T ss_dssp --TTCEEEECSSCCTHHHHHHHH----HTCEEEECSSSSCCHHHHHHHHHHTTTTEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred --CCCEEEEeCCChHHHHHHHHH----cCCEEEEEecCCCCCCCHHHHHHHhCCCCCEEEEcCCCCCCCCCcCHHHHHHH
Confidence 789999999999998887654 4888888774 45666 7889999999988 679999999999999
Q ss_pred HH--hCCcEEEEEeccccccC------C-CCC----CcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCce
Q 001990 322 AH--ANGVKVVMATDLLALTI------L-KPP----GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRI 387 (985)
Q Consensus 322 a~--~~galliV~a~~~alg~------l-~~p----~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~ 387 (985)
++ ++|+++++|. ..+... . .++ ..++.+++++|. |.++.| |..+|++++++++.+.+...
T Consensus 179 ~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~~~~- 252 (365)
T 3get_A 179 IKGVNEDCLVVIDA-AYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLG----GLRIGYGIANANIISAFYKL- 252 (365)
T ss_dssp HHTSCTTSEEEEEC-TTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCT----TTCCEEEEECHHHHHHHHHH-
T ss_pred HHhCCCCcEEEEeC-ccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCc----chheEEEEcCHHHHHHHHHh-
Confidence 88 6699999952 333111 1 111 234678999987 887533 34579999988877664100
Q ss_pred eeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCE
Q 001990 388 VGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 388 vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~ 467 (985)
+...+.| .....++.++ +...+.++++.++..++.+++++.|+++| +
T Consensus 253 -------------------------~~~~~~~---~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~ 299 (365)
T 3get_A 253 -------------------------RAPFNVS---NLALKAAVAA----MDDDEFTEKTLENNFSQMELYKEFAKKHN-I 299 (365)
T ss_dssp -------------------------SCTTCSC---HHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHHHHHHTT-C
T ss_pred -------------------------cCCCCcC---HHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHHHHHHHhCC-C
Confidence 0000111 1122222222 22346788899999999999999999986 8
Q ss_pred EEcCCCCcceEEEecCC--HHHHHHHHHHcCceeeeec---CCeEEEEeccCCCHHHHHHHHHHHh
Q 001990 468 EVQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVVD---SNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 468 ~~~~~~~~~~~~i~~~~--~~~l~~~L~~~Gi~~~~~~---~~~lris~~~~~t~edid~ll~~l~ 528 (985)
++.... ..-+.+.+++ ..++.+.|.++||.+.... ++.+|++++ +++|+++++++|.
T Consensus 300 ~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~---~~~~i~~l~~~l~ 361 (365)
T 3get_A 300 KIIDSY-TNFITYFFDEKNSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG---TSYENEKFFTEFD 361 (365)
T ss_dssp EECCCS-SSEEEEECSSSCHHHHHHHHHTTTEECEECGGGTCSEEEEECC---CHHHHHHHHHHHH
T ss_pred EECCCC-CeEEEEECCCCCHHHHHHHHHHCCEEEEECccCCCCEEEEEcC---CHHHHHHHHHHHH
Confidence 876431 1224566653 8899999999999886543 589999987 8999999999986
No 184
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.77 E-value=1.3e-17 Score=192.87 Aligned_cols=296 Identities=17% Similarity=0.167 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHH----HHhcCcEEEEEe
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVG 708 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~----~~~~G~~v~~v~ 708 (985)
...++++++++++|.+. .+++++|++++..++.++ ..++++||++...|+.+... ++..|++++.++
T Consensus 57 ~~~~l~~~la~~~g~~~-~~~~~~gt~a~~~al~~l--------~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 127 (412)
T 2cb1_A 57 TAKALEERLKALEGALE-AVVLASGQAATFAALLAL--------LRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVD 127 (412)
T ss_dssp HHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHTT--------CCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEEC
T ss_pred HHHHHHHHHHHHhCCCc-EEEECCHHHHHHHHHHHH--------hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEEC
Confidence 46688999999999874 456677877664444332 13678999999877654333 345799999998
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCCCcEE
Q 001990 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 709 ~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g~Di~ 787 (985)
. |+++|+++++ +++++|++++| |++|.+. |+++|+++|+++|+++|+|++|..+. ....+..+++|++
T Consensus 128 ~------~~~~l~~~i~---~~~~~v~~~~~~n~~G~~~-~l~~i~~l~~~~~~~li~D~~~~~~~-~~~~~~~~~~di~ 196 (412)
T 2cb1_A 128 P------EPEAVREALS---AKTRAVFVETVANPALLVP-DLEALATLAEEAGVALVVDNTFGAAG-ALCRPLAWGAHVV 196 (412)
T ss_dssp S------SHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHTCEEEEECGGGTTT-TSCCGGGGTCSEE
T ss_pred C------CHHHHHHHhc---cCCeEEEEeCCCCCCcccc-cHHHHHHHHHHcCCEEEEECCCcccc-ccCCccccCCeEE
Confidence 6 4999999997 78999999998 5799998 89999999999999999999986431 1123445789999
Q ss_pred EeCCcccccccCCCCCCcceeeeecc-ccc-----CcCCCCccccC------CCCCCCCCCCCCCCcccccchhhhHHHH
Q 001990 788 HLNLHKTFCIPHGGGGPGMGPIGVKK-HLA-----PFLPSHPVVST------GGIPAPEKSQPLGTIAAAPWGSALILPI 855 (985)
Q Consensus 788 ~~s~hKtl~~p~g~GGPg~G~l~~~~-~l~-----~~lpg~~~g~~------~~~~~~~~~~~t~~i~s~~~g~~~~~~~ 855 (985)
++|+||+|+.| |+ ++|++++.+ .+. ...++...|.. .+......+..+.+..+. ...+. .
T Consensus 197 ~~S~~K~~~~~---~~-~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~-~~~~~---~ 268 (412)
T 2cb1_A 197 VESLTKWASGH---GS-VLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGM-ALSPF---N 268 (412)
T ss_dssp EEETTTTTTCS---SC-CCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTTTCC-CCCHH---H
T ss_pred EECCcccccCC---CC-cEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHhcCC-CCChH---H
Confidence 99999998533 22 245555543 321 00011000000 000000000000011110 00111 1
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc--cCCeeE-cCCC------------CceeEEEEEEecCccccCCCCH
Q 001990 856 SYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILF-RGVN------------GTVAHEFIVDLRGLKNTAGIEP 920 (985)
Q Consensus 856 A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~--~~~i~~-~g~~------------~~~~~~~vv~~~~~~~~~g~~~ 920 (985)
++..+ .+-+.+.+..++..++++++.+.|.+ ++..+. ++.. ......+.+.+ + +.
T Consensus 269 a~~~~--~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-------~-~~ 338 (412)
T 2cb1_A 269 AYLLF--QGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-------G-DL 338 (412)
T ss_dssp HHHHH--HHGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-------S-SH
T ss_pred hHHHH--cCCchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-------C-CH
Confidence 22222 22344555556667888999999986 344332 2210 01122233333 2 56
Q ss_pred HHHHHHHHHCCCccCCCC---------CC-------C-----------CCEEEEeccCCCCHHhhchHHHHHHHHHH
Q 001990 921 EDVAKRLMDYGFHGPTMS---------WP-------V-----------PGTLMIEPTESESKVCHNREDLFFQILLS 970 (985)
Q Consensus 921 ~~l~~~L~e~Gi~~~~~~---------~p-------v-----------~~~lris~t~~~t~eeId~~~~~i~aL~~ 970 (985)
+++.+.|.+.||.+ ..+ .| + ++.||+|++..+++++|| .|+++|++
T Consensus 339 ~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~---~l~~al~~ 411 (412)
T 2cb1_A 339 ERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLA---LFEEALEA 411 (412)
T ss_dssp HHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHH---HHHHHHHC
T ss_pred HHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHH---HHHHHHhh
Confidence 77888888889886 321 11 1 578999999999999999 99998864
No 185
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.77 E-value=3.1e-17 Score=188.20 Aligned_cols=287 Identities=12% Similarity=0.112 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEc-CCCCCCcHHHHHh-----------
Q 001990 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIP-VSAHGTNPATAAM----------- 699 (985)
Q Consensus 632 ~~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~-~~~Hg~~~~~~~~----------- 699 (985)
+...++++++++++|.+. .+++++|++++++++.+++.+...+| .++++||+. ..+|+........
T Consensus 78 ~~~~~l~~~la~~~~~~~-v~~~~gg~ea~~~al~~~~~~~~~~g-~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 155 (395)
T 3nx3_A 78 ENIAAAAKNLAKASALER-VFFTNSGTESIEGAMKTARKYAFNKG-VKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFK 155 (395)
T ss_dssp HHHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHHHHHHHTT-CTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGC
T ss_pred HHHHHHHHHHHHhcCCCe-EEEeCCHHHHHHHHHHHHHHHhhccC-CCCCEEEEEcCCcCCCCHHHHhhcCCcccccccC
Confidence 356788999999998544 46778899988888777776554444 356777774 4667765444322
Q ss_pred -cCcEEEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccc
Q 001990 700 -CGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 700 -~G~~v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~d----i~eI~~la~~~g~lliVD~a~~~~~ 773 (985)
.+.++..++.+ |+++|+++++ +++++|+++.+ |+.|.+. + +++|+++|++||+++|+|++|. ++
T Consensus 156 ~~~~~~~~~~~~-----d~~~l~~~l~---~~~~~v~~~~~~~~~G~~~-~~~~~l~~l~~l~~~~~~~li~Dev~~-~~ 225 (395)
T 3nx3_A 156 PLISGVKFAKYN-----DISSVEKLVN---EKTCAIILESVQGEGGINP-ANKDFYKALRKLCDEKDILLIADEIQC-GM 225 (395)
T ss_dssp SCCSCEEEECTT-----CHHHHHTTCC---TTEEEEEEESEECTTSCEE-CCHHHHHHHHHHHHHHTCEEEEECTTT-TT
T ss_pred CCCCCcEEeCCC-----CHHHHHHhcc---CCeEEEEEeCccCCCCccc-CCHHHHHHHHHHHHHcCCEEEEEeccc-CC
Confidence 23466667764 8999999987 78888888764 5678776 4 9999999999999999999974 22
Q ss_pred cCCCCC---C--cCCCcEEEeCCcccccccCCCCCCcceeeeecccc-cCcCCCCccccCCCCCCCCCCCCCCCcccccc
Q 001990 774 VGLTSP---G--YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHL-APFLPSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 774 ~g~~~~---g--~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l-~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~ 847 (985)
+..... . ...+|+++++ |+|+ +|.++|++++++++ .+.+.....+ . +.+.
T Consensus 226 g~~g~~~~~~~~~~~~d~~t~s--K~~~-----~G~~~G~~~~~~~~~~~~~~~~~~~------------~--~~~~--- 281 (395)
T 3nx3_A 226 GRSGKFFAYEHAQILPDIMTSA--KALG-----CGLSVGAFVINQKVASNSLEAGDHG------------S--TYGG--- 281 (395)
T ss_dssp TTTSSSSGGGGGTCCCSEEEEC--GGGT-----TTSCCEEEEECHHHHHHHSCTTCCS------------S--CBSC---
T ss_pred CcCCcchhHHhcCCCCCEEEec--cccc-----CCCceEEEEEchhhhhhhcCCcccC------------C--CCCC---
Confidence 111111 1 2246887664 8874 35789999999887 6555321111 0 1111
Q ss_pred hhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc---CC-ee-EcCCCCceeEEEEEEecCccccCCCCHHH
Q 001990 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YP-IL-FRGVNGTVAHEFIVDLRGLKNTAGIEPED 922 (985)
Q Consensus 848 g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~---~~-i~-~~g~~~~~~~~~vv~~~~~~~~~g~~~~~ 922 (985)
++..++++.+.+..+..+.+ .++..++.+++++.|.+. +. +. ..+. +. .+.+.+.. ..+..+
T Consensus 282 -~~~~~~aa~aal~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-g~---~~~~~~~~-----~~~~~~ 348 (395)
T 3nx3_A 282 -NPLVCAGVNAVFEIFKEEKI---LENVNKLTPYLEQSLDELINEFDFCKKRKGL-GF---MQGLSLDK-----SVKVAK 348 (395)
T ss_dssp -CHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE-TT---EEEEEECT-----TSCHHH
T ss_pred -CHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHhCCCeEEEEeE-EE---EEEEEeCC-----cchHHH
Confidence 23333444555555433433 344556666777776541 22 11 1111 11 23344431 236789
Q ss_pred HHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHH
Q 001990 923 VAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 923 l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
+.+.|.++||.+.... ++.+|++++..+|++|++ +++++|+++++
T Consensus 349 ~~~~l~~~Gi~v~~~~---~~~iRi~~~~~~t~e~i~---~~l~~l~~~l~ 393 (395)
T 3nx3_A 349 VIQKCQENALLLISCG---ENDLRFLPPLILQKEHID---EMSEKLRKALK 393 (395)
T ss_dssp HHHHHHHTTEECEEET---TTEEEECCCTTCCHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHCCCEEecCC---CCEEEEECCCCCCHHHHH---HHHHHHHHHHH
Confidence 9999999999875432 479999999999999999 99999998865
No 186
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.77 E-value=1.7e-18 Score=195.94 Aligned_cols=296 Identities=10% Similarity=0.020 Sum_probs=187.3
Q ss_pred cHHHHHHHHHHHHHHHhCCCc--ccee-cChHHHHHHHHHHHHHHHHHhcCCCCCCEE--EEcCCCCCCcHHH--HHhcC
Q 001990 629 GYQEMFNNLGEWLCTITGFDS--FSLQ-PNAGAAGEYAGLMVIRAYHKARGDHHRNVC--IIPVSAHGTNPAT--AAMCG 701 (985)
Q Consensus 629 G~~~~~~el~~~la~l~G~~~--~~~~-~~sGa~g~~a~l~air~~~~~~g~~~~~~V--lv~~~~Hg~~~~~--~~~~G 701 (985)
-+.++++++++.+++++|.+. ..++ +++|++++ .+++.++. +++++ ++.. .+ ++++. ++..|
T Consensus 47 ~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~---n~~~~~~~------~~~~~~~i~~~-~~-~~~~~~~a~~~G 115 (361)
T 3m5u_A 47 VFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQF---AMIPMNLA------LNGVCEYANTG-VW-TKKAIKEAQILG 115 (361)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH---HHHHHHHC------CSSCEEEEECS-HH-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHH---HHHHHhcC------CCCeEEEEeCC-HH-HHHHHHHHHHcC
Confidence 456789999999999999963 2344 45555444 44555442 23433 3332 22 34433 45679
Q ss_pred cEEEEEeCCCCCC--CCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCC
Q 001990 702 MKIVSVGTDAKGN--INIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTS 778 (985)
Q Consensus 702 ~~v~~v~~~~~g~--iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~ 778 (985)
++++++++++++. +++++ + |+ ++|++|++++. |.+|++.++ | ++ +|++++||++|+.+...+.
T Consensus 116 ~~v~~~~~~~~g~~~~~~~~-~--l~---~~t~lv~~~~~e~~tG~~~~~---i---~~-~~~~~~vD~~q~~g~~~id- 181 (361)
T 3m5u_A 116 VNVKTVASSEESNFDHIPRV-E--FS---DNADYAYICSNNTIYGTQYQN---Y---PK-TKTPLIVDASSDFFSRKVD- 181 (361)
T ss_dssp CCEEEEEECTTTTSCSCCCC-C--CC---TTSSEEEEESEETTTTEECSS---C---CC-CSSCEEEECGGGTTSSCCC-
T ss_pred CceEEEecccCcCCCcCChh-h--cC---CCCCEEEEeCCCCCcceeCCc---c---cc-cCCEEEEEcccccCCCCCC-
Confidence 9999999988774 57766 4 66 78999988875 568998633 3 33 4999999999976655442
Q ss_pred CCcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCC----CccccCCCCCCCCCCCCCCCcccccchhhhHHH
Q 001990 779 PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS----HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILP 854 (985)
Q Consensus 779 ~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg----~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~ 854 (985)
.. .+|++++++||++ |.||+|++++++++.+.+++ ..+.+... .......+|+++.+ . ..+
T Consensus 182 ~~--~~d~~~~s~~K~~------gp~G~g~l~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~Tp~v~~----i-~~l- 246 (361)
T 3m5u_A 182 FS--NIALFYGGVQKNA------GISGLSCIFIRKDMLERSKNKQIPSMLNYLTH-AENQSLFNTPPTFA----I-YMF- 246 (361)
T ss_dssp CT--TEEEEEEETTTTS------SCTTCEEEEEEHHHHHHHHTCCCCGGGCHHHH-HHTTTCSSCCCHHH----H-HHH-
T ss_pred cc--cCCEEEEechhcc------CCCccEEEEEcHHHHhhhcCCCCCceeehHHH-hhcCCCCCCccHHH----H-HHH-
Confidence 22 4799999999998 34589999999876543311 11111000 00112234555432 1 112
Q ss_pred HHHHHHHHhchh-hHHHHHHHHHHHHHHHHHHHhccCCe-eEcCC-CCceeEEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001990 855 ISYTYIAMMGSK-GLTEASKIAILNANYMAKRLEKHYPI-LFRGV-NGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 855 ~A~a~l~~lg~~-gl~~~~~~~~~~a~~l~~~L~~~~~i-~~~g~-~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~G 931 (985)
.++++.+..+ |+.++.++..+++++++++|++.-.+ ....+ .......+.+.++.. .+.+ .++.+.|.++|
T Consensus 247 --~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~---~~~~-~~~~~~L~~~g 320 (361)
T 3m5u_A 247 --NLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSLMNVSFNIAKN---KDLE-PLFVKEAEEAG 320 (361)
T ss_dssp --HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGGBCSSEEEEEESSC---TTHH-HHHHHHHHHTT
T ss_pred --HHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHHcCCeEEEEECCCc---hhhh-HHHHHHHHHCC
Confidence 2345555556 78888889999999999999873212 11111 111112344555410 0123 46888999999
Q ss_pred CccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 932 FHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 932 i~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
|.+..-... .+.+|+|+..++|++||| +|+++|+++.++
T Consensus 321 I~~~~g~~~-~g~iRiS~~~~~t~edId---~l~~al~~~~~~ 359 (361)
T 3m5u_A 321 MIGLKGHRI-LGGIRASIYNALNLDQVK---TLCEFMKEFQGK 359 (361)
T ss_dssp EECCBCCTT-TCSEEEECCTTSCHHHHH---HHHHHHHHHHHH
T ss_pred CEEecCCCc-cCeEEEEccCCCCHHHHH---HHHHHHHHHHHh
Confidence 987432211 267999999999999999 999999998765
No 187
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.77 E-value=1.1e-17 Score=192.34 Aligned_cols=283 Identities=16% Similarity=0.133 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHH----HhcCcEEEEEe
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA----AMCGMKIVSVG 708 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~----~~~G~~v~~v~ 708 (985)
...++++.+++++|.+. .+++++|++++.+++.++. .++++||++...|+.....+ +..|++++.++
T Consensus 67 ~~~~l~~~la~~~g~~~-~~~~~sGt~A~~~al~~~~--------~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 137 (392)
T 3qhx_A 67 TRTALEAALAAVEDAAF-GRAFSSGMAAADCALRAML--------RPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVA 137 (392)
T ss_dssp HHHHHHHHHHHHTTCSE-EEEESSHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEEC
T ss_pred HHHHHHHHHHHHhCCCc-EEEECCHHHHHHHHHHHHh--------CCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeC
Confidence 46789999999999885 4667788877655544331 46789999988776444433 56799999998
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCCCcEE
Q 001990 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 709 ~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g~Di~ 787 (985)
.+ |+++|+++++ +++++|++++| |++|.+. |+++|+++|+++|+++|+|++|..+ ....+..+++|++
T Consensus 138 ~~-----d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~la~~~g~~li~D~~~~~~--~~~~~~~~~~di~ 206 (392)
T 3qhx_A 138 LA-----DLDAVRAAIR---PTTRLIWVETPTNPLLSIA-DIAGIAQLGADSSAKVLVDNTFASP--ALQQPLSLGADVV 206 (392)
T ss_dssp TT-----CHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHTCEEEEECTTTCT--TTCCGGGGTCSEE
T ss_pred CC-----CHHHHHHhhC---CCCeEEEEECCCCCCcEEe-cHHHHHHHHHHcCCEEEEECCCccc--ccCChHHhCCcEE
Confidence 75 8999999997 79999999998 5799998 8999999999999999999998633 2335567899999
Q ss_pred EeCCcccccccCCCCCCcceeeeecc-cccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhchh
Q 001990 788 HLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 788 ~~s~hKtl~~p~g~GGPg~G~l~~~~-~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~ 866 (985)
+.|+||+|+.+ |++.+|++++++ ++.+.+..... .++. .. .+. .++..+..+ +
T Consensus 207 ~~S~sK~lg~~---g~~~~G~v~~~~~~~~~~l~~~~~-------------~~g~-~~----~~~---~~~~~~~~l--~ 260 (392)
T 3qhx_A 207 LHSTTKYIGGH---SDVVGGALVTNDEELDQSFAFLQN-------------GAGA-VP----GPF---DAYLTMRGL--K 260 (392)
T ss_dssp EEETTTTTTCS---SCCCCEEEEESCHHHHHHHHHHHH-------------HHCC-CC----CHH---HHHHHHHHH--T
T ss_pred EEcCccccCCC---CCceEEEEEECcHHHHHHHHHHHH-------------hcCC-CC----CHH---HHHHHHhhh--h
Confidence 99999998521 224588998874 55544321000 0000 11 111 122223322 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCe---eEcCCCC-c-----------eeEEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001990 867 GLTEASKIAILNANYMAKRLEKHYPI---LFRGVNG-T-----------VAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 867 gl~~~~~~~~~~a~~l~~~L~~~~~i---~~~g~~~-~-----------~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~G 931 (985)
.+....++..++++++.+.|++...+ .+++-.+ + ....+.+.+.. .......+.+.|...|
T Consensus 261 ~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~----~~~~~~~~~~~l~~~~ 336 (392)
T 3qhx_A 261 TLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRA----GRTAAEQLCAKTNIFI 336 (392)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETT----CHHHHHHHHHHCSSSE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCC----cHHHHHHHHHhCCCce
Confidence 34455667778888899988864332 2222100 0 11234455531 0023455666666556
Q ss_pred CccCCC------CCC---------------CCCEEEEeccCCCCHHhhchHHHHHHHH
Q 001990 932 FHGPTM------SWP---------------VPGTLMIEPTESESKVCHNREDLFFQIL 968 (985)
Q Consensus 932 i~~~~~------~~p---------------v~~~lris~t~~~t~eeId~~~~~i~aL 968 (985)
+.++.. ..| .++.||+|++..+++++|+ .|.++|
T Consensus 337 ~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~---~l~~al 391 (392)
T 3qhx_A 337 LAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLD---DLKQAL 391 (392)
T ss_dssp ECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHH---HHHHHH
T ss_pred ECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHH---HHHHHh
Confidence 554310 111 1478999999988888888 777665
No 188
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.77 E-value=1.7e-17 Score=187.41 Aligned_cols=318 Identities=13% Similarity=0.116 Sum_probs=208.6
Q ss_pred CCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHHHHHHHHHhhCCCC--cceeeccchHHHHHHHHHHhh
Q 001990 172 GMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPM--SNASLLDEGTAAAEAMAMCNN 249 (985)
Q Consensus 172 G~g~~~~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g~~~--~~~sl~~~~ta~~ea~~~a~~ 249 (985)
+.| |...|+.+.+++.+. + ..+.++.. .+...++++.+|+++|.+. .++.+++|+|.+++.++.++.
T Consensus 9 ~~g--p~~~~~~v~~a~~~~--~----~~~~~~~~---~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~ 77 (366)
T 1m32_A 9 TPG--PLTTSRTVKEAMLFD--S----CTWDDDYN---IGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSAL 77 (366)
T ss_dssp SSS--SCCCCHHHHHTTCCC--C----CTTSHHHH---TTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSC
T ss_pred cCC--CcCCCHHHHHHHhhh--h----cCCCHHHH---HHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhc
Confidence 555 334777776554442 1 11122211 1345678899999999432 358888999999888877653
Q ss_pred hhcCCCCEEEEc-CCCChhHH-HHHHHhhcCCCeEEEEeCc--------hhhhc-cC--CCEeEEEEEcC-CCCeeeccH
Q 001990 250 IQKGKKKTFIIA-SNCHPQTI-DICITRADGFDIKVVVSDL--------KDIDY-KS--GDVCGVLVQYP-GTEGEVLDY 315 (985)
Q Consensus 250 ~~~~~g~~Vlv~-~~~h~s~~-~~~~~~a~~~gi~v~~~~~--------~~l~~-l~--~~t~~V~v~~p-n~~G~i~dl 315 (985)
. +||+|++. ...|++.. ..+ +..|++++.++. +++++ ++ +++++|++.+| |++|.+.|+
T Consensus 78 -~--~gd~vi~~~~~~~~~~~~~~~----~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l 150 (366)
T 1m32_A 78 -G--PQDKVLIVSNGAYGARMVEMA----GLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPI 150 (366)
T ss_dssp -C--TTCCEEEEESSHHHHHHHHHH----HHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCH
T ss_pred -C--CCCeEEEEeCCCccHHHHHHH----HHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecCH
Confidence 2 67887755 47888643 333 234666666543 45555 43 35888888887 789999999
Q ss_pred HHHHHHHHhCCcEEEEEeccccccCCC-CCCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeec
Q 001990 316 GDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSID 393 (985)
Q Consensus 316 ~~I~~~a~~~galliV~a~~~alg~l~-~p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d 393 (985)
++|.++||++|+++++| +..+.+... ...++|+|++++|. |++++| +|+|++++++++++++....
T Consensus 151 ~~i~~l~~~~~~~li~D-ea~~~~~~~~~~~~~~~di~~~s~~K~~~~~-----~g~G~~~~~~~~~~~~~~~~------ 218 (366)
T 1m32_A 151 DEVGALAHRYGKTYIVD-AMSSFGGIPMDIAALHIDYLISSANKCIQGV-----PGFAFVIAREQKLAACKGHS------ 218 (366)
T ss_dssp HHHHHHHHHHTCEEEEE-CTTTTTTSCCCTTTTTCSEEEEESSSTTCCC-----SSEEEEEEEHHHHTTCTTCC------
T ss_pred HHHHHHHHHcCCEEEEE-CCccccCcCccccccCccEEEecCcccccCC-----CceEEEEECHHHHHhhcCCC------
Confidence 99999999999999995 344554432 23457899999998 777533 45799999999888774311
Q ss_pred CCCCcceEEeccccccccccc----ccCCCccchhHHHHHHHHHHHHHcCcch-HHHHHHHHHHHHHHHHHHHhcCCCEE
Q 001990 394 SSGKPALRVAMQTREQHIRRD----KATSNICTAQALLANMAAMYAVYHGPEG-LKTIAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 394 ~~g~~~~~l~l~tre~~~rre----~atsni~t~~~l~a~~aa~y~~~~g~~G-l~~i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
..+.+++.......+.. .+|.|. ....++.+++ ..+...| ++++.++..++++++++.|+++| ++
T Consensus 219 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~a~~~al--~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~-~~ 288 (366)
T 1m32_A 219 ----RSLSLDLYAQWRCMEDNHGKWRFTSPT---HTVLAFAQAL--KELAKEGGVAARHQRYQQNQRSLVAGMRALG-FN 288 (366)
T ss_dssp ----SCSTTCHHHHHHHHHHTTTCCSSCCCH---HHHHHHHHHH--HHHHHHTHHHHHHHHHHHHHHHHHHHHHHTT-CC
T ss_pred ----CCccccHHHHHhhhcccCCCCCCCCCH---HHHHHHHHHH--HHHHHccCHhHHHHHHHHHHHHHHHHHHHCC-Ce
Confidence 01111110000000000 123332 2333444444 3444456 88899999999999999999886 87
Q ss_pred EcCC--CCcc-eEEEecC---C--HHHHHHHHHHcCceeeee---cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 469 VQGL--PFFD-TVKVKCA---D--AHAIASAAYKIEMNLRVV---DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 469 ~~~~--~~~~-~~~i~~~---~--~~~l~~~L~~~Gi~~~~~---~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+..+ +... .+.+..+ + ..++.+.|.++||.++.. .++.+|++++..+|++|+++++++|..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 360 (366)
T 1m32_A 289 TLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRT 360 (366)
T ss_dssp BSSCGGGBCSSEEEEECCCCTTCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred eccCchhcCceEEEEEcCccCCCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence 7643 1222 3555554 3 788999999999988653 357899999999999999999999974
No 189
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.77 E-value=1.7e-18 Score=194.73 Aligned_cols=288 Identities=19% Similarity=0.233 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCC-cH--HHHHhcCcEEEEEeCC
Q 001990 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGT-NP--ATAAMCGMKIVSVGTD 710 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~-~~--~~~~~~G~~v~~v~~~ 710 (985)
..++++++++++|.+.. +++++|++++..++.+ +. .++++|+++++.|.. +. ..+...|++++.+ .+
T Consensus 40 ~~~l~~~la~~~g~~~~-~~~~~gt~a~~~~~~~---~~-----~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~ 109 (347)
T 1jg8_A 40 INELERLAAETFGKEAA-LFVPSGTMGNQVSIMA---HT-----QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PG 109 (347)
T ss_dssp HHHHHHHHHHHHTCSEE-EEESCHHHHHHHHHHH---HC-----CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CE
T ss_pred HHHHHHHHHHHhCCceE-EEecCcHHHHHHHHHH---hc-----CCCCEEEEcCcchhhhccccchhhccCeEEEEe-cC
Confidence 45788999999998754 5566777766444332 21 467899999987753 22 2356789999988 55
Q ss_pred CCCCCCHHHHHHHHHhc---CCCeEEEEEEcC-CCc-cccc--cCHHHHHHHHHHcCCEEEEEcccccc---ccCCCCCC
Q 001990 711 AKGNINIEELRKAAEAN---RDNLSTLMVTYP-STH-GVYE--EGIDEICKIIHDNGGQVYMDGANMNA---QVGLTSPG 780 (985)
Q Consensus 711 ~~g~iDle~L~~~i~~~---~~~t~~Vvi~~p-n~~-G~i~--~di~eI~~la~~~g~lliVD~a~~~~---~~g~~~~g 780 (985)
+++.+|+++|++++++. .+++++|++++| |++ |.+. .++++|+++|+++|+++++|++|..+ ..+. .+.
T Consensus 110 ~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~-~~~ 188 (347)
T 1jg8_A 110 KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGV-PVK 188 (347)
T ss_dssp ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCC-CHH
T ss_pred CCCccCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCC-ChH
Confidence 66778999999999731 127999999998 467 8875 14789999999999999999987431 1121 111
Q ss_pred --cCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCC--ccccCCCCCCCCCCCCCCCcccccchhhhHHHHH
Q 001990 781 --YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSH--PVVSTGGIPAPEKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 781 --~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~--~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A 856 (985)
..++|.+++++||+|+ +|.+++++.++++++.+... ..+ ++... .......+
T Consensus 189 ~~~~~~d~~~~s~sK~l~------~~~G~~~~~~~~~~~~~~~~~~~~~--------------~~~~~----~~~~~~~~ 244 (347)
T 1jg8_A 189 EYAGYADSVMFCLSKGLC------APVGSVVVGDRDFIERARKARKMLG--------------GGMRQ----AGVLAAAG 244 (347)
T ss_dssp HHHHTCSEEEEESSSTTC------CSSCEEEEECHHHHHHHHHHHHHHT--------------CCCSS----THHHHHHH
T ss_pred HhcccccEEEEecccccC------CCceEEEEcCHHHHHHHHHHHHHcC--------------CchhH----HHHHHHHH
Confidence 1368988889999984 33223566666555432100 000 01110 11111112
Q ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccC
Q 001990 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP 935 (985)
Q Consensus 857 ~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~ 935 (985)
...+..+ .+.+ ++..++++++.+.|++ ++.+....+.+ +.+.++++. .+.+..++.+.|.++||.+.
T Consensus 245 ~~~l~~~-~~~~----~~~~~~~~~l~~~L~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~l~~~gi~v~ 312 (347)
T 1jg8_A 245 IIALTKM-VDRL----KEDHENARFLALKLKEIGYSVNPEDVKT---NMVILRTDN----LKVNAHGFIEALRNSGVLAN 312 (347)
T ss_dssp HHHHHHS-STTH----HHHHHHHHHHHHHHHHHTCBCCGGGCCS---SEEEEECTT----SSSCHHHHHHHHHHHTEECE
T ss_pred HHHHHHH-HHHH----HHHHHHHHHHHHHHHhcCceeccCCCcc---eEEEEEccc----ccCCHHHHHHHHHHCCCEEe
Confidence 2223321 1222 2334566888888876 44432112111 223355431 13568899999999999875
Q ss_pred CCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 936 TMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 936 ~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
... .+.+|++++..+|++|++ +++++|++++++
T Consensus 313 ~~~---~~~iRl~~~~~~~~e~i~---~~~~~l~~~l~~ 345 (347)
T 1jg8_A 313 AVS---DTEIRLVTHKDVSRNDIE---EALNIFEKLFRK 345 (347)
T ss_dssp EEE---TTEEEEECCTTSCHHHHH---HHHHHHHHHHHH
T ss_pred cCC---CCeEEEEeCCCCCHHHHH---HHHHHHHHHHHh
Confidence 332 378999998889999999 999999988754
No 190
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.76 E-value=3.3e-17 Score=190.28 Aligned_cols=298 Identities=11% Similarity=0.061 Sum_probs=190.4
Q ss_pred HHHHHHHHHh-----CCCccc----eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHh-cCcEEE
Q 001990 636 NLGEWLCTIT-----GFDSFS----LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAM-CGMKIV 705 (985)
Q Consensus 636 el~~~la~l~-----G~~~~~----~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~-~G~~v~ 705 (985)
++++.+++++ +.+... +++++|++++..++.++. .++++|+++.+.|..+...++. .|++++
T Consensus 92 ~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~--------~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~ 163 (430)
T 2x5f_A 92 ELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFV--------NQDDTILLPEHNWGNYKLVFNTRNGANLQ 163 (430)
T ss_dssp HHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHC--------CTTCEEEEESSCCTHHHHHHTTTTCCEEE
T ss_pred HHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHh--------CCCCEEEEcCCcCccHHHHHHHhcCCeEE
Confidence 4566666666 666544 455555655543333321 3678999998877777666777 899999
Q ss_pred EEeCCC-CCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccC---HHHHHHHHHH-----cCCEEEEEccccccc-c
Q 001990 706 SVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHD-----NGGQVYMDGANMNAQ-V 774 (985)
Q Consensus 706 ~v~~~~-~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~d---i~eI~~la~~-----~g~lliVD~a~~~~~-~ 774 (985)
.+|.++ ++.+|+++|+++++++++++++|++++| |++|.+. + +++|+++|++ +|+++++|+++.... .
T Consensus 164 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~ 242 (430)
T 2x5f_A 164 TYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTP-THKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYE 242 (430)
T ss_dssp EECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCS
T ss_pred EEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcC-CHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCC
Confidence 999865 4679999999999854348899999999 4789886 5 8999999999 999999999985321 1
Q ss_pred CC--CCCC----c-CCC---cEEEeCCcccccccCCCCCCcceeeee---cccccCcCCCCccccCCCCCCCCCCCCCCC
Q 001990 775 GL--TSPG----Y-IGA---DVCHLNLHKTFCIPHGGGGPGMGPIGV---KKHLAPFLPSHPVVSTGGIPAPEKSQPLGT 841 (985)
Q Consensus 775 g~--~~~g----~-~g~---Di~~~s~hKtl~~p~g~GGPg~G~l~~---~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~ 841 (985)
+- .... . .+. ++++.++||+|+. .|.++|++++ ++++.+.+....... . + ..+.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~----~G~riG~~~~~~~~~~~~~~l~~~~~~~-----~--~-~~~~~ 310 (430)
T 2x5f_A 243 DVYTQSLFTALTNLHSNAILPIRLDGATKEFFA----WGFRVGFMTFGTSDQTTKEVLEAKVKGL-----I--R-SNISS 310 (430)
T ss_dssp SSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTC----GGGCCEEEEEBCCCHHHHHHHHHHHHHH-----H--H-TTTSS
T ss_pred cccchHHHHHHhhccCCcceEEEEEecccCCCC----CCCCeEEEEEecCCHHHHHHHHHHHhhh-----h--h-cccCC
Confidence 11 1101 1 234 5778899999853 3567899999 777655432110000 0 0 00111
Q ss_pred cccccchhhhHHHHHHHHHH-Hhc-hhhHHHHHHHHHHHHHHHHHHHhcc---CCeeEcCCCCceeEEEEEEecCccccC
Q 001990 842 IAAAPWGSALILPISYTYIA-MMG-SKGLTEASKIAILNANYMAKRLEKH---YPILFRGVNGTVAHEFIVDLRGLKNTA 916 (985)
Q Consensus 842 i~s~~~g~~~~~~~A~a~l~-~lg-~~gl~~~~~~~~~~a~~l~~~L~~~---~~i~~~g~~~~~~~~~vv~~~~~~~~~ 916 (985)
. +.....++.+++. ... .+.+.+..++..++++++.+.|++. ..+.+..+.+..+ +.++++
T Consensus 311 ~------~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~--~~~~~~------ 376 (430)
T 2x5f_A 311 G------PLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYF--MAIKVH------ 376 (430)
T ss_dssp C------CHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEEECCCCBSSE--EEEEES------
T ss_pred C------ChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceeeCCCceEE--EEeCCC------
Confidence 1 1111222223333 110 1223335666677888999999731 2333323222221 334443
Q ss_pred CCCHHHHHHHHHH-CCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 917 GIEPEDVAKRLMD-YGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 917 g~~~~~l~~~L~e-~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
+.+..++.+.|.+ +||.+... .++.+|++++. .+++|++ ++++.|+++++++
T Consensus 377 ~~~~~~~~~~l~~~~gi~v~~g---~~~~iRis~~~-~~~e~i~---~~~~~l~~~l~~~ 429 (430)
T 2x5f_A 377 DVDPEALRKHLIDKYSIGVIAL---NATDIRIAFSC-VEKDDIP---HVFDSIAKAIDDL 429 (430)
T ss_dssp SSCHHHHHHHHHHHHCEECEEC---SSSEEEEEGGG-SCGGGHH---HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCEEEecC---CCCeEEEEEec-CCHHHHH---HHHHHHHHHHHhc
Confidence 3578899999998 89987532 14789999985 5899999 9999999988754
No 191
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.76 E-value=1e-16 Score=183.97 Aligned_cols=287 Identities=18% Similarity=0.207 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEc-CCCCCCcHHHHHhcCcE--------
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIP-VSAHGTNPATAAMCGMK-------- 703 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~-~~~Hg~~~~~~~~~G~~-------- 703 (985)
...++++.+++++|.+. .+++++|++++.+++.+++.+... +..++++||++ ..+|+.....+...|.+
T Consensus 83 ~~~~l~~~la~~~g~~~-v~~~~gg~~a~~~al~~~~~~~~~-~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p 160 (397)
T 2ord_A 83 PQMELAELLSKNTFGGK-VFFANTGTEANEAAIKIARKYGKK-KSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEP 160 (397)
T ss_dssp HHHHHHHHHHHTTTSCE-EEEESSHHHHHHHHHHHHHHHHHH-HCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCS
T ss_pred HHHHHHHHHHHhcCCCe-EEEeCCHHHHHHHHHHHHHHHhhc-CCCCCceEEEEcCCcCCCchhhhhccCChhhccccCC
Confidence 46688999999998654 366788888876666655433211 11124567764 56788777666666665
Q ss_pred ----EEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCcccc-c--cCHHHHHHHHHHcCCEEEEEccccccccC
Q 001990 704 ----IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVY-E--EGIDEICKIIHDNGGQVYMDGANMNAQVG 775 (985)
Q Consensus 704 ----v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i-~--~di~eI~~la~~~g~lliVD~a~~~~~~g 775 (985)
++.+|.+ |+++|+++++ +++++|++++| |++|.+ . .++++|+++|+++|+++++|++|. +++-
T Consensus 161 ~~~~~~~~~~~-----d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~ 231 (397)
T 2ord_A 161 LVPGFEYFEFN-----NVEDLRRKMS---EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQC-GMGR 231 (397)
T ss_dssp CCTTEEEECTT-----CHHHHHHHCC---TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTT
T ss_pred CCCCeeEecCC-----CHHHHHHHhh---cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCcc
Confidence 7777763 8999999997 78999999988 578983 1 279999999999999999999985 3321
Q ss_pred CCCC---CcCC--CcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhh
Q 001990 776 LTSP---GYIG--ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 776 ~~~~---g~~g--~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~ 850 (985)
...+ ..++ +|++++ +|+|+ +|.++|++++++++. .+.... + .. +.+. +.
T Consensus 232 ~g~~~~~~~~~~~~d~~s~--sK~~~-----~G~r~G~~~~~~~~~-~l~~~~---------~---~~--~~~~----~~ 285 (397)
T 2ord_A 232 TGKLFAYQKYGVVPDVLTT--AKGLG-----GGVPIGAVIVNERAN-VLEPGD---------H---GT--TFGG----NP 285 (397)
T ss_dssp TSSSSHHHHHTCCCSEEEE--CGGGG-----TTSCCEEEEECSTTC-CCCTTS---------S---CC--SSTT----CH
T ss_pred CccchhhhhhCCCCCeeee--ccccC-----CCcCeEEEEEchHhc-ccCCCC---------c---CC--CCCC----CH
Confidence 1111 1223 788755 69985 456799999988765 443210 0 01 1111 22
Q ss_pred hHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc---CCee--EcCCCCceeEEEEEEecCccccCCCCHHHHHH
Q 001990 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAK 925 (985)
Q Consensus 851 ~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~---~~i~--~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~ 925 (985)
....++.+.+..+..+ +..++..++++++.+.|++. +.+. ..+ .+. .+.++++ .+.+..++.+
T Consensus 286 ~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~---~~~~~~~-----~~~~~~~l~~ 353 (397)
T 2ord_A 286 LACRAGVTVIKELTKE---GFLEEVEEKGNYLMKKLQEMKEEYDVVADVRG-MGL---MIGIQFR-----EEVSNREVAT 353 (397)
T ss_dssp HHHHHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE-ETT---EEEEEEC-----TTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHhCCceEEEEE-EeE---EEEEEEC-----ChHHHHHHHH
Confidence 3333444556655443 34456677788888888762 4432 111 111 2344554 1245788999
Q ss_pred HHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 926 RLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 926 ~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
.|.++||.+.... ++.+|++++..+|++|++ +++++|++++++
T Consensus 354 ~l~~~gi~v~~~~---~~~iRis~~~~~~~e~i~---~~~~~l~~~l~~ 396 (397)
T 2ord_A 354 KCFENKLLVVPAG---NNTIRFLPPLTVEYGEID---LAVETLKKVLQG 396 (397)
T ss_dssp HHHHTTEECEEET---TTEEEECCCTTCCHHHHH---HHHHHHHHHHHT
T ss_pred HHHHCCCEEccCC---CCEEEEECCcCCCHHHHH---HHHHHHHHHHhh
Confidence 9999999875332 478999998899999999 999999987653
No 192
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.76 E-value=2.2e-17 Score=191.71 Aligned_cols=305 Identities=12% Similarity=0.114 Sum_probs=186.5
Q ss_pred cHHHHHHHHHHHHHHHhC----CCccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHH-HhcCc
Q 001990 629 GYQEMFNNLGEWLCTITG----FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA-AMCGM 702 (985)
Q Consensus 629 G~~~~~~el~~~la~l~G----~~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~-~~~G~ 702 (985)
|..++.+.+.+++.+.+| .+... ++.+++++++..++.++. .++++|+++.+.|..+...+ ...|+
T Consensus 84 g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~--------~~gd~Vl~~~p~y~~~~~~~~~~~g~ 155 (428)
T 1iay_A 84 GLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA--------DPGDAFLVPSPYYPAFNRDLRWRTGV 155 (428)
T ss_dssp CCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC--------CTTCEEEEESSCCTTHHHHTTTTTCC
T ss_pred CcHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhC--------CCCCeEEEccCCCcchHHHHHHhcCC
Confidence 444444444444444444 44444 444555555543333321 36789999998887665533 46899
Q ss_pred EEEEEeCCC--CCCCCHHHHHHHHHhc---CCCeEEEEEEcCC-CccccccC---HHHHHHHHHHcCCEEEEEccccccc
Q 001990 703 KIVSVGTDA--KGNINIEELRKAAEAN---RDNLSTLMVTYPS-THGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 703 ~v~~v~~~~--~g~iDle~L~~~i~~~---~~~t~~Vvi~~pn-~~G~i~~d---i~eI~~la~~~g~lliVD~a~~~~~ 773 (985)
+++.+|.+. ++.+|+++|+++++++ .+++++|++++|+ ++|.+. | +++|+++|+++|+++|+|++|....
T Consensus 156 ~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~ 234 (428)
T 1iay_A 156 QLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTL-DKDTLKSVLSFTNQHNIHLVCDEIYAATV 234 (428)
T ss_dssp EEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECTTGGGC
T ss_pred EEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcC-CHHHHHHHHHHHHHCCeEEEEeccccccc
Confidence 999999864 3478999999999742 2479999999995 699987 6 9999999999999999999985321
Q ss_pred -cC--CCCCCc---------CCCc--EEEeCCcccccccCCCCCCcceeeee-cccccCcCCCCccccCCCCCCCCCCCC
Q 001990 774 -VG--LTSPGY---------IGAD--VCHLNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVSTGGIPAPEKSQP 838 (985)
Q Consensus 774 -~g--~~~~g~---------~g~D--i~~~s~hKtl~~p~g~GGPg~G~l~~-~~~l~~~lpg~~~g~~~~~~~~~~~~~ 838 (985)
.+ +..... +++| +++.|+||+|+. .|.++|++++ ++++.+.+.. . . .
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~----~Glr~G~~~~~~~~~~~~~~~-~-~------------~ 296 (428)
T 1iay_A 235 FDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGL----PGFRVGIIYSFNDDVVNCARK-M-S------------S 296 (428)
T ss_dssp CSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSC----GGGCEEEEEESCHHHHHHHHH-H-H------------T
T ss_pred cCCCCccCHHHhccccccccCCCCcEEEEecchhhcCC----CCceEEEEEeCCHHHHHHHHH-H-H------------h
Confidence 11 111001 1268 788999999853 3567899998 4555543321 0 0 0
Q ss_pred CCCcccccchhhhHHHHHHHHHHHh--chhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCcccc
Q 001990 839 LGTIAAAPWGSALILPISYTYIAMM--GSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNT 915 (985)
Q Consensus 839 t~~i~s~~~g~~~~~~~A~a~l~~l--g~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~ 915 (985)
+.+.+ .....++.+++... ..+.+.+..++..++++++.+.|++ ++.+. .+.... .+.++++.....
T Consensus 297 ~~~~~------~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~g~--~~~~~~~~~~~~ 366 (428)
T 1iay_A 297 FGLVS------TQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCL--KNNAGL--FCWMDLRPLLRE 366 (428)
T ss_dssp TSCCC------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBC--CCSSSS--EEEEECGGGCSS
T ss_pred cccCC------HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--CCCeeE--EEEEechhhcCC
Confidence 00111 11111222222211 1123455666777888999999987 44432 221122 234555410000
Q ss_pred CC-CCHHHHHHHHHHC-CCccCCCC-CC--CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 916 AG-IEPEDVAKRLMDY-GFHGPTMS-WP--VPGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 916 ~g-~~~~~l~~~L~e~-Gi~~~~~~-~p--v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
.. .+..++.+.|.++ ||.+.... +. .++.+||+++ .+|++|++ +++++|++++++
T Consensus 367 ~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~e~i~---~~~~~l~~~l~~ 426 (428)
T 1iay_A 367 STFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVD---IALARIRRFVGV 426 (428)
T ss_dssp SSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHH---HHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-cCCHHHHH---HHHHHHHHHHhc
Confidence 00 1245788999876 99875322 21 1478999998 58999999 999999988753
No 193
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.76 E-value=2.7e-17 Score=189.33 Aligned_cols=285 Identities=15% Similarity=0.138 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHH----HhcCcEEEEE
Q 001990 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA----AMCGMKIVSV 707 (985)
Q Consensus 632 ~~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~----~~~G~~v~~v 707 (985)
+...++++.+++++|.+. .+++++|++++..++.++. .++++||++...|+.+...+ ...|++++.+
T Consensus 65 ~~~~~l~~~la~~~g~~~-~i~~~sG~~a~~~~l~~~~--------~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~ 135 (398)
T 1gc0_A 65 PTLNLLEARMASLEGGEA-GLALASGMGAITSTLWTLL--------RPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHV 135 (398)
T ss_dssp HHHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHC--------CTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEE
T ss_pred hHHHHHHHHHHHHhCCCc-EEEECCHHHHHHHHHHHHh--------cCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEE
Confidence 357789999999999884 4667788776644444331 36789999998887665543 5679999999
Q ss_pred eCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCCCcE
Q 001990 708 GTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADV 786 (985)
Q Consensus 708 ~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g~Di 786 (985)
+.+ |+++++++++ +++++|++++| |++|.+. |+++|+++|+++|+++|+|++|..+.. ..+..+++|+
T Consensus 136 ~~~-----d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~D~~~~~~~~--~~~~~~~~d~ 204 (398)
T 1gc0_A 136 DMA-----DLQALEAAMT---PATRVIYFESPANPNMHMA-DIAGVAKIARKHGATVVVDNTYCTPYL--QRPLELGADL 204 (398)
T ss_dssp CTT-----CHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHGGGTCEEEEECTTTHHHH--CCGGGGTCSE
T ss_pred CCC-----CHHHHHHhcC---CCCeEEEEECCCCCCcccc-cHHHHHHHHHHcCCEEEEECCCccccc--CCchhhCceE
Confidence 874 8999999997 78999999998 4799998 899999999999999999999864432 2344578999
Q ss_pred EEeCCcccccccCCCCCCcceeeeecccccC-cCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhch
Q 001990 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP-FLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 787 ~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~-~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~ 865 (985)
++.|+||+|+.| |++-+|+++++++... .+.....+. .+ ... ++.. +++.+..+
T Consensus 205 ~~~S~sK~~~~~---~~~~~G~l~~~~~~~~~~~~~~~~~~----------~~-~~~------~~~~---~~~~~~~l-- 259 (398)
T 1gc0_A 205 VVHSATKYLSGH---GDITAGIVVGSQALVDRIRLQGLKDM----------TG-AVL------SPHD---AALLMRGI-- 259 (398)
T ss_dssp EEEETTTTTTCS---SSCCCEEEEECHHHHHHHHHTHHHHH----------TC-CCC------CHHH---HHHHHHHH--
T ss_pred EEECCccccCCC---CCCeEEEEEEChHHHHHHHHHHhhcc----------CC-CCC------CHHH---HHHHHhcc--
Confidence 999999998532 2222589988876443 221110000 00 011 1111 22222222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCe---eEcC-----------CC-CceeEEEEEEecCccccCCCCHHHHHHHHHHC
Q 001990 866 KGLTEASKIAILNANYMAKRLEKHYPI---LFRG-----------VN-GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY 930 (985)
Q Consensus 866 ~gl~~~~~~~~~~a~~l~~~L~~~~~i---~~~g-----------~~-~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~ 930 (985)
+.+....++..++++++.+.|++...+ .+++ +. ....+.+.+.+. + ....+.+.|.+.
T Consensus 260 ~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~------~-~~~~~~~~l~~~ 332 (398)
T 1gc0_A 260 KTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELK------G-GIGAGRRFMNAL 332 (398)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEET------T-HHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEEC------C-CHHHHHHHHHhC
Confidence 234445566677788888888762111 1111 00 001223444543 1 234566677777
Q ss_pred CCccCCCC------------------CC--------C-CCEEEEeccCCCCHHhhchHHHHHHHHHHH
Q 001990 931 GFHGPTMS------------------WP--------V-PGTLMIEPTESESKVCHNREDLFFQILLSL 971 (985)
Q Consensus 931 Gi~~~~~~------------------~p--------v-~~~lris~t~~~t~eeId~~~~~i~aL~~i 971 (985)
|+.....+ .| + ++.||+|++..+++++|+ .|.++|+++
T Consensus 333 ~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~---~l~~al~~~ 397 (398)
T 1gc0_A 333 QLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLA---DVQQALKAS 397 (398)
T ss_dssp SSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHH---HHHHHHHHH
T ss_pred CCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHH---HHHHHHHhc
Confidence 77642110 01 1 378999999999999999 998888764
No 194
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.76 E-value=5.8e-17 Score=187.74 Aligned_cols=302 Identities=12% Similarity=0.123 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHhCCCccceec-ChHHHHHHHHHHHHHHHHHhcCCCC---------CCEEEEcCCCCCCcHHHHHhcCcE
Q 001990 634 FNNLGEWLCTITGFDSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHH---------RNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~~~~~-~sGa~g~~a~l~air~~~~~~g~~~---------~~~Vlv~~~~Hg~~~~~~~~~G~~ 703 (985)
..++++.++++++.+...+++ +++++++.. .++++.+. . + .+ +++|+++.+.|..+...++..|++
T Consensus 72 ~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~-~~~~~~l~-~-~-~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~ 147 (423)
T 3ez1_A 72 LPSARALFAGYLDVKAENVLVWNNSSLELQG-LVLTFALL-H-G-VRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFE 147 (423)
T ss_dssp CHHHHHHHHHHTTSCGGGEEECSSCHHHHHH-HHHHHHHH-T-C-CTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCE
T ss_pred hHHHHHHHHHHhCCChhhEEEeCCcHHHHHH-HHHHHHHh-c-c-CCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCE
Confidence 347888999999988765544 444444420 02333322 1 0 02 589999888776666667889999
Q ss_pred EEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEE-cC-CCccccccCH---HHHHHHH-HHcCCEEEEEcccccc-ccC-
Q 001990 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVT-YP-STHGVYEEGI---DEICKII-HDNGGQVYMDGANMNA-QVG- 775 (985)
Q Consensus 704 v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~-~p-n~~G~i~~di---~eI~~la-~~~g~lliVD~a~~~~-~~g- 775 (985)
++.+|.+++| +|+++|++++++ .+++++|++. +| |++|.+. +. ++|+++| +++|+++|+|+++... ...
T Consensus 148 ~~~v~~~~~g-~d~~~l~~~l~~-~~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~ 224 (423)
T 3ez1_A 148 LLTVDMQSDG-PDVDAVERLAGT-DPSVKGILFVPTYSNPGGETI-SLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEE 224 (423)
T ss_dssp EEEEEEETTE-ECHHHHHHHHHS-CTTEEEEEECSSSCTTTCCCC-CHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSS
T ss_pred EEeccCCCCC-CCHHHHHHHHhh-CCCceEEEECCCCCCCCCcCC-CHHHHHHHHHHHHhccCCEEEEECCcchhhcCCC
Confidence 9999997765 999999999952 2689988765 56 5799987 44 5888898 9999999999998521 111
Q ss_pred -CCCC----------CcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCccc
Q 001990 776 -LTSP----------GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAA 844 (985)
Q Consensus 776 -~~~~----------g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s 844 (985)
...+ +..+.++++.|++|++ ++|.++|++++++++.+.+..... .. ..+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-----~~G~r~G~~~~~~~~~~~~~~~~~------------~~--~~~~ 285 (423)
T 3ez1_A 225 DRAEPVNFVVLARDAGYPDRAFVFASTSKIT-----FAGAGLGFVASSEDNIRWLSKYLG------------AQ--SIGP 285 (423)
T ss_dssp SCCCCCCHHHHHHHHTCTTSEEEEEESTTTS-----CSSSSCEEEEECHHHHHHHHHHHH------------HS--CSCC
T ss_pred CCCCCcchhhhhhccCCCCeEEEEeCchhhc-----cCCcceEEEEeCHHHHHHHHHHHh------------hh--ccCC
Confidence 1111 1234568889999974 246789999998877654421100 00 0111
Q ss_pred ccchhhhHHHHHHHHHHH-hc--hhhHHHHHHHHHHHHHHHHHHHhcc---CC--eeEcCCCCceeEEEEEEecCccccC
Q 001990 845 APWGSALILPISYTYIAM-MG--SKGLTEASKIAILNANYMAKRLEKH---YP--ILFRGVNGTVAHEFIVDLRGLKNTA 916 (985)
Q Consensus 845 ~~~g~~~~~~~A~a~l~~-lg--~~gl~~~~~~~~~~a~~l~~~L~~~---~~--i~~~g~~~~~~~~~vv~~~~~~~~~ 916 (985)
+ .....++.+++.. .+ .+-+.+..+...++.+.+.+.|.+. .. +.+..+.+..+ +.++++
T Consensus 286 ~----~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~--~~~~~~------ 353 (423)
T 3ez1_A 286 N----KVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYF--ISLDTA------ 353 (423)
T ss_dssp C----HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSC--EEEEES------
T ss_pred C----HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEE--EEEECC------
Confidence 1 1111222233333 11 1223333333444555555555441 22 33323222222 345554
Q ss_pred CCCHHHHHHHHHHCCCccCCC--CCC-----CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHHH
Q 001990 917 GIEPEDVAKRLMDYGFHGPTM--SWP-----VPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTTF 977 (985)
Q Consensus 917 g~~~~~l~~~L~e~Gi~~~~~--~~p-----v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~~ 977 (985)
+.+...+.+.|.++||.+... .++ .++.+|++++.. +++||+ ++++.|+++++++..
T Consensus 354 ~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~i~---~~~~~l~~~l~~~~~ 417 (423)
T 3ez1_A 354 EPVADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEEVR---TAMQVVAACIRLATE 417 (423)
T ss_dssp SSCHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS-CHHHHH---HHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC-CHHHHH---HHHHHHHHHHHHHHH
Confidence 226788999999999987541 121 358899999765 999999 999999999887653
No 195
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.76 E-value=1.9e-17 Score=185.15 Aligned_cols=273 Identities=17% Similarity=0.132 Sum_probs=183.7
Q ss_pred HHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---hhh
Q 001990 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---KDI 291 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~---~~l 291 (985)
++++.+|+++|.+ ...++.+||.+++.++.++ .. +||+|+++...|+++...++.+++..|++++.++. +++
T Consensus 2 ~l~~~la~~~g~~--~~i~~~sG~~a~~~~~~~~-~~--~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l 76 (331)
T 1pff_A 2 ALEGKIAKLEHAE--ACAATASGMGAIAASVWTF-LK--AGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNI 76 (331)
T ss_dssp HHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHH-CC--TTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHH
T ss_pred hHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHh-cC--CCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCCCCHHHH
Confidence 5778999999987 3557777787777766654 22 78999999999999988886544557999988865 556
Q ss_pred hc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHh-CCcEEEEEeccccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001990 292 DY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHA-NGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 292 ~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~-~galliV~a~~~alg~l~~p~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
++ +++++++|++++| |++|.+.|+++|.++|++ +|+++++| +..+.+....+.++|+|++++|. |.|++| |+
T Consensus 77 ~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D-~a~~~~~~~~~~~~~~d~~~~s~~K~~~~~---~~ 152 (331)
T 1pff_A 77 EKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVD-NTFASPILTNPLDLGVDIVVHSATKYINGH---TD 152 (331)
T ss_dssp HHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEE-CTTTHHHHCCGGGGTCSEEEEETTTTTSSS---SS
T ss_pred HHhhcCCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEE-CCCcccccCChhhcCCcEEEEECccccCCC---CC
Confidence 66 7889999999998 689999999999999999 99999995 34455544344578999999998 878654 33
Q ss_pred CceEEEEEch-hhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHH
Q 001990 368 PHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 368 P~~G~l~~~~-~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i 446 (985)
+.+|++++++ ++.+++.....+ + . .++.|. ...++..+++ . .+...
T Consensus 153 r~~G~~~~~~~~~~~~l~~~~~~----------~-~------------~~~~~~---~~~~~~~~~l--~-----~~~~~ 199 (331)
T 1pff_A 153 VVAGLVCSRADIIAKVKSQGIKD----------I-T------------GAIISP---HDAWLITRGT--L-----TLDMR 199 (331)
T ss_dssp CCCEEEEECHHHHHHHHHTCCCC----------C-C------------CCCCCH---HHHHHHHHHH--H-----HHHHH
T ss_pred ceEEEEEeCcHHHHHHHHHHHHh----------h-c------------CCCCCH---HHHHHHHcCc--c-----hHHHH
Confidence 3368999998 777665221100 0 0 001111 1111111121 1 12333
Q ss_pred HHHHHHHHHHHHHHHhcCC--------------CEEEcCC---CCcceEEEecCCHHHHHHHHHHcCceeeee-------
Q 001990 447 AQRVHGLAGTFALGLKKLG--------------TVEVQGL---PFFDTVKVKCADAHAIASAAYKIEMNLRVV------- 502 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g--------------~~~~~~~---~~~~~~~i~~~~~~~l~~~L~~~Gi~~~~~------- 502 (985)
.++..+++.++.+.|++.. ++++... .....+.|..++..++.+.|.++||.++..
T Consensus 200 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~~~~~s~g~~~s 279 (331)
T 1pff_A 200 VKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLGGPES 279 (331)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHTCSSSEECSSCCSSSC
T ss_pred HHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHhCCCceeccCCCCcce
Confidence 3444455555555554321 1221110 012346666655778888898999965321
Q ss_pred -----------------------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 503 -----------------------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -----------------------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.++.+|+|++..+|++++++++++|..
T Consensus 280 l~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~ 329 (331)
T 1pff_A 280 LIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDL 329 (331)
T ss_dssp EEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred eeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHH
Confidence 147899999999999999999999974
No 196
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.76 E-value=1.9e-17 Score=190.52 Aligned_cols=163 Identities=18% Similarity=0.212 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHH----HhcCcEEEEE
Q 001990 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA----AMCGMKIVSV 707 (985)
Q Consensus 632 ~~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~----~~~G~~v~~v 707 (985)
+...++++++++++|.+. .+++++|++++..++.++. .++++||++...|+.+...+ +..|++++.+
T Consensus 64 ~~~~~l~~~la~~~g~~~-~i~~~sG~~a~~~~l~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v 134 (398)
T 2rfv_A 64 PTTDALEKKLAVLERGEA-GLATASGISAITTTLLTLC--------QQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFV 134 (398)
T ss_dssp HHHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHC--------CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEE
T ss_pred hHHHHHHHHHHHHhCCCc-EEEECCHHHHHHHHHHHHh--------CCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEe
Confidence 356789999999999884 4667778776644444331 36789999998776655544 6789999999
Q ss_pred eCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCCCcE
Q 001990 708 GTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADV 786 (985)
Q Consensus 708 ~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g~Di 786 (985)
+.+ |+++++++++ +++++|++++| |++|.+. |+++|+++|+++|+++|+|+++..+.. ..+..+++|+
T Consensus 135 ~~~-----d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~De~~~~~~~--~~~~~~~~di 203 (398)
T 2rfv_A 135 DAA-----KPEEIRAAMR---PETKVVYIETPANPTLSLV-DIETVAGIAHQQGALLVVDNTFMSPYC--QQPLQLGADI 203 (398)
T ss_dssp CTT-----SHHHHHHHCC---TTEEEEEEESSBTTTTBCC-CHHHHHHHHHHTTCEEEEECTTTCTTT--CCGGGGTCSE
T ss_pred CCC-----CHHHHHHhcC---CCCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEECCCccccc--CCchhhCCcE
Confidence 874 8999999997 78999999998 5799998 899999999999999999999864432 2344578999
Q ss_pred EEeCCcccccccCCCCCCcceeeeecccccC
Q 001990 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP 817 (985)
Q Consensus 787 ~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~ 817 (985)
++.|+||+|+.| |++-+|++++++++.+
T Consensus 204 ~~~s~sK~~~~~---g~~~~G~~~~~~~~~~ 231 (398)
T 2rfv_A 204 VVHSVTKYINGH---GDVIGGIIVGKQEFID 231 (398)
T ss_dssp EEEETTTTTTCS---SCCCCEEEEECHHHHH
T ss_pred EEEeCcccccCC---CCceEEEEEECHHHHH
Confidence 999999998532 2222499999877654
No 197
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.76 E-value=9.9e-17 Score=184.59 Aligned_cols=276 Identities=17% Similarity=0.114 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001990 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~-- 288 (985)
....++++.+++++|.+ ...++.+||.++++++.++. . +||+|++++..|+++...++.+++..|++++.++.
T Consensus 65 ~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~~-~--~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d 139 (398)
T 1gc0_A 65 PTLNLLEARMASLEGGE--AGLALASGMGAITSTLWTLL-R--PGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMAD 139 (398)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC-C--TTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTC
T ss_pred hHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh-c--CCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCC
Confidence 34567888999999987 46678888888777766542 2 78999999999999999887766778999999875
Q ss_pred -hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCCCCcccceEEEecC-ccccccCC
Q 001990 289 -KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMG 364 (985)
Q Consensus 289 -~~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~p~~~GaDi~v~s~-k~lg~P~~ 364 (985)
+++++ +++++++|++++| |.+|.+.|+++|+++||++|+++++| +.++.+....+..+|+|+++.|. |.|++|
T Consensus 140 ~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-~~~~~~~~~~~~~~~~d~~~~S~sK~~~~~-- 216 (398)
T 1gc0_A 140 LQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVD-NTYCTPYLQRPLELGADLVVHSATKYLSGH-- 216 (398)
T ss_dssp HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEE-CTTTHHHHCCGGGGTCSEEEEETTTTTTCS--
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEE-CCCcccccCCchhhCceEEEECCccccCCC--
Confidence 45555 7889999999998 67999999999999999999999995 34555554455678999999998 877644
Q ss_pred CCCCceEEEEEchhhHh-cCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchH
Q 001990 365 YGGPHAAFLATSQEYKR-MMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGL 443 (985)
Q Consensus 365 ~GGP~~G~l~~~~~~~~-~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl 443 (985)
|+|-.|+++++++.++ .+.... +. ...++.|. ...++..++ .+.+
T Consensus 217 -~~~~~G~l~~~~~~~~~~~~~~~----------------------~~-~~~~~~~~---~~~~~~~~~-------l~~~ 262 (398)
T 1gc0_A 217 -GDITAGIVVGSQALVDRIRLQGL----------------------KD-MTGAVLSP---HDAALLMRG-------IKTL 262 (398)
T ss_dssp -SSCCCEEEEECHHHHHHHHHTHH----------------------HH-HTCCCCCH---HHHHHHHHH-------HTTH
T ss_pred -CCCeEEEEEEChHHHHHHHHHHh----------------------hc-cCCCCCCH---HHHHHHHhc-------cchH
Confidence 2233589999877654 221000 00 00111111 111111111 1345
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCEE--------------EcCC---CCcceEEEecCC-HHHHHHHHHHcCceeee----
Q 001990 444 KTIAQRVHGLAGTFALGLKKLGTVE--------------VQGL---PFFDTVKVKCAD-AHAIASAAYKIEMNLRV---- 501 (985)
Q Consensus 444 ~~i~~~~~~~a~~l~~~L~~~g~~~--------------~~~~---~~~~~~~i~~~~-~~~l~~~L~~~Gi~~~~---- 501 (985)
+...++..+++.++++.|+++++++ +..+ .....+.|.+++ ..++.+.|.+.|+....
T Consensus 263 ~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~i~~~~~s~G 342 (398)
T 1gc0_A 263 NLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLG 342 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHHHHHHHHCSSSEECSCCS
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCCHHHHHHHHHhCCCceeccCCC
Confidence 6667777888888888888764333 1111 123456777766 55677777777875422
Q ss_pred --------------------------ecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001990 502 --------------------------VDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 502 --------------------------~~~~~lris~~~~~t~edid~ll~~l~ 528 (985)
+.++.+|+|++..+++++|+++.++|.
T Consensus 343 ~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~ 395 (398)
T 1gc0_A 343 DAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALK 395 (398)
T ss_dssp CSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHH
T ss_pred CcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHH
Confidence 014789999999999999999999986
No 198
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.76 E-value=6e-17 Score=190.85 Aligned_cols=313 Identities=16% Similarity=0.123 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHHhCCCc-cceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCCCcHHHHHhcCc-------
Q 001990 632 EMFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------- 702 (985)
Q Consensus 632 ~~~~el~~~la~l~G~~~-~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv-~~~~Hg~~~~~~~~~G~------- 702 (985)
+...+++++++++++.+. ..++.+||++++++++.+++.|+..+|..++++||+ ...+||.........|.
T Consensus 97 ~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~ 176 (476)
T 3i5t_A 97 SPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNF 176 (476)
T ss_dssp HHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTS
T ss_pred HHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhcccc
Confidence 456688999999986433 347788999999999999988877777556677776 55778877655433221
Q ss_pred -----EEEEEeCCC--CC-CCC--------HHHHHHHHHhcC-CCeEEEEEEcC-CCccccccC---HHHHHHHHHHcCC
Q 001990 703 -----KIVSVGTDA--KG-NIN--------IEELRKAAEANR-DNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGG 761 (985)
Q Consensus 703 -----~v~~v~~~~--~g-~iD--------le~L~~~i~~~~-~~t~~Vvi~~p-n~~G~i~~d---i~eI~~la~~~g~ 761 (985)
.+..++... .. ..| +++|++++++.. +++++|+++.+ +..|.+.++ +++|+++|++||+
T Consensus 177 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gi 256 (476)
T 3i5t_A 177 DIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDI 256 (476)
T ss_dssp CCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTC
T ss_pred CCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCC
Confidence 233344221 11 112 889999997543 46777777655 356765422 9999999999999
Q ss_pred EEEEEccccccccCCCCC---C-c--CCCcEEEeCCcccccccCCCCC-CcceeeeecccccCcCCCCccccCCCCCCCC
Q 001990 762 QVYMDGANMNAQVGLTSP---G-Y--IGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPE 834 (985)
Q Consensus 762 lliVD~a~~~~~~g~~~~---g-~--~g~Di~~~s~hKtl~~p~g~GG-Pg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~ 834 (985)
+||+|++|. +++-.... . . ..+|+++++ |+|+ || .++|++++++++++.+....... +.
T Consensus 257 llI~DEv~~-g~gr~G~~~~~~~~~~v~pdi~t~s--K~l~-----~G~~plg~v~~~~~i~~~~~~~~~~~------~~ 322 (476)
T 3i5t_A 257 LYISDEVVT-GFGRCGEWFASEKVFGVVPDIITFA--KGVT-----SGYVPLGGLAISEAVLARISGENAKG------SW 322 (476)
T ss_dssp EEEEECTTT-TTTTTSSSCHHHHTTCCCCSEEEEC--GGGG-----TTSSCCEEEEECHHHHHTTSGGGCTT------CE
T ss_pred EEEEEeccc-CCccccCceeeecccCCCcchhhhh--hhhc-----CCCcCeEEEEECHHHHHHHhcCCccc------cc
Confidence 999999884 22111111 1 1 236888764 8874 35 77899999988876653210000 00
Q ss_pred CCCCCCCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc--CCee--EcCCCCceeEEEEEEec
Q 001990 835 KSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH--YPIL--FRGVNGTVAHEFIVDLR 910 (985)
Q Consensus 835 ~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~--~~i~--~~g~~~~~~~~~vv~~~ 910 (985)
...+ .++.+++..++++.+.+..+.++++ .++..++.+++++.|++. +..+ ..+ .+.+ +.+++.
T Consensus 323 ~~~~-----~t~~~np~a~aAa~aaL~~~~~~~~---~~~~~~~~~~l~~~L~~l~~~~~v~~v~~-~G~~---~~i~~~ 390 (476)
T 3i5t_A 323 FTNG-----YTYSNQPVACAAALANIELMEREGI---VDQAREMADYFAAALASLRDLPGVAETRS-VGLV---GCVQCL 390 (476)
T ss_dssp ECCC-----CTTTTCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHTTTTSTTEEEEEE-ETTE---EEEEEC
T ss_pred cccc-----CCCCcCHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHhcCCCeEEEEe-cCce---eEEEEe
Confidence 0000 1122345556666677776655544 345667778888888751 2211 111 1111 234442
Q ss_pred CccccCCC-------CHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHHHc
Q 001990 911 GLKNTAGI-------EPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTTFA 978 (985)
Q Consensus 911 ~~~~~~g~-------~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~~~ 978 (985)
... .+.. ....+.+.|.++|+.+... .+.|||+|+..+|++||+ +++++|+++++++.+.
T Consensus 391 ~~~-~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----g~~iRi~p~l~~t~e~i~---~~l~~l~~~l~~~~~~ 457 (476)
T 3i5t_A 391 LDP-TRADGTAEDKAFTLKIDERCFELGLIVRPL----GDLCVISPPLIISRAQID---EMVAIMRQAITEVSAA 457 (476)
T ss_dssp CC------CCHHHHHHHHHHHHHHHHTTEECEEE----TTEEEECCCTTCCHHHHH---HHHHHHHHHHHHHHHH
T ss_pred cCc-cccccccchhHHHHHHHHHHHHCCCEEEec----CCEEEEECCCCCCHHHHH---HHHHHHHHHHHHHHHH
Confidence 100 0000 1567888999999987532 378999999999999999 9999999999877643
No 199
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.76 E-value=4.4e-17 Score=189.17 Aligned_cols=305 Identities=12% Similarity=0.076 Sum_probs=194.2
Q ss_pred hhcHHHHHHHHHHHHHHHhCCCc---------cc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHH
Q 001990 627 AQGYQEMFNNLGEWLCTITGFDS---------FS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT 696 (985)
Q Consensus 627 ~~G~~~~~~el~~~la~l~G~~~---------~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~ 696 (985)
.+|..++.+.+.+++++.+|.+. .. ++++++++++..++.++. .++++|+++.+.|..+...
T Consensus 77 ~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~--------~~gd~Vlv~~p~y~~~~~~ 148 (425)
T 2r2n_A 77 SAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII--------NPGDNVLLDEPAYSGTLQS 148 (425)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC--------CTTCEEEEESSCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC--------CCCCEEEEeCCCcHHHHHH
Confidence 36877888888888888888764 24 444555555533333321 3678999998877666666
Q ss_pred HHhcCcEEEEEeCCCCCCCCHHHHHHHHHhcC---------CCeEEEEE-EcC-CCcccccc--CHHHHHHHHHHcCCEE
Q 001990 697 AAMCGMKIVSVGTDAKGNINIEELRKAAEANR---------DNLSTLMV-TYP-STHGVYEE--GIDEICKIIHDNGGQV 763 (985)
Q Consensus 697 ~~~~G~~v~~v~~~~~g~iDle~L~~~i~~~~---------~~t~~Vvi-~~p-n~~G~i~~--di~eI~~la~~~g~ll 763 (985)
++..|.+++.+|.+++| +|+++|++++++++ +++++|++ .+| |++|.+.+ ++++|+++|+++|+++
T Consensus 149 ~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~l 227 (425)
T 2r2n_A 149 LHPLGCNIINVASDESG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLI 227 (425)
T ss_dssp HGGGTCEEEEECEETTE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHcCCEEEEeCcCCCC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence 77899999999987654 89999999997422 46777766 466 57898862 3569999999999999
Q ss_pred EEEcccccc-ccCC--CCC---CcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCC
Q 001990 764 YMDGANMNA-QVGL--TSP---GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQ 837 (985)
Q Consensus 764 iVD~a~~~~-~~g~--~~~---g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~ 837 (985)
++|+++... ..+- ... ...+.++++.|++|+|+ .|.++|++++++++++.+.... . .
T Consensus 228 i~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-----~GlRiG~~~~~~~l~~~l~~~~-~-----------~ 290 (425)
T 2r2n_A 228 IEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-----SGLRIGFLTGPKPLIERVILHI-Q-----------V 290 (425)
T ss_dssp EEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-----STTCCEEEEEEHHHHHHHHHHH-H-----------T
T ss_pred EEECCcccccCCCCCCCCccccCCCCCEEEEccchhhcc-----CccceEEEecCHHHHHHHHHHH-H-----------H
Confidence 999998521 1111 111 12234588889999984 3567899999987665432100 0 0
Q ss_pred CCCCcccccchhhhHHHHHHHHHHHhchh----hHHHHHHHHHHHHHHHHHHHhcc-CCe-eEcCCCCceeEEEEEEecC
Q 001990 838 PLGTIAAAPWGSALILPISYTYIAMMGSK----GLTEASKIAILNANYMAKRLEKH-YPI-LFRGVNGTVAHEFIVDLRG 911 (985)
Q Consensus 838 ~t~~i~s~~~g~~~~~~~A~a~l~~lg~~----gl~~~~~~~~~~a~~l~~~L~~~-~~i-~~~g~~~~~~~~~vv~~~~ 911 (985)
.+. +.+ .....++.+++..++.+ .+.+..++..++.+++.+.|++. ..+ .+..+.+.. .+.++++.
T Consensus 291 ~~~--~~~----~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~--~~~~~~~~ 362 (425)
T 2r2n_A 291 STL--HPS----TFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGM--FLWIKVKG 362 (425)
T ss_dssp TTC--SSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSS--EEEEEETT
T ss_pred hcC--CCC----HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceE--EEEEEeCC
Confidence 001 111 11222233445543322 23444455667778888888763 232 222222222 23455541
Q ss_pred ccccCCCCHHH-HHHHHHHCCCccCCCC-CC-----CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 912 LKNTAGIEPED-VAKRLMDYGFHGPTMS-WP-----VPGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 912 ~~~~~g~~~~~-l~~~L~e~Gi~~~~~~-~p-----v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
+.+..+ +.+.|.++||.+.... +. ..+.+|++++. .+++|++ ++++.|++++++
T Consensus 363 -----~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~---~~~~~l~~~l~~ 423 (425)
T 2r2n_A 363 -----INDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMD---VAFQVLAQLIKE 423 (425)
T ss_dssp -----CSCCHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHH---HHHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHH---HHHHHHHHHHHH
Confidence 234445 6888899999874321 21 13789999984 5999999 999999988765
No 200
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.76 E-value=6e-18 Score=194.93 Aligned_cols=331 Identities=13% Similarity=0.076 Sum_probs=202.0
Q ss_pred ccccccceecccCcccccccc-----ccccccccCCCCcchhhhcHHHHHHHHHHHHHHHhCCC--c-cc-eecChHHHH
Q 001990 590 SMIPLGSCTMKLNATTEMMPV-----TWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD--S-FS-LQPNAGAAG 660 (985)
Q Consensus 590 ~~~~lGs~~~~~~~~~~~~~~-----~~~~f~~~~p~~p~e~~~G~~~~~~el~~~la~l~G~~--~-~~-~~~~sGa~g 660 (985)
.++.|+.+.+.++...+.... ....+..|.+ ..|..++.+.+.+++.+.+|.+ . .. +++++|+++
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a 97 (410)
T 3e2y_A 24 SVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTR------GFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGS 97 (410)
T ss_dssp TSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCC------TTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHhCccccCCCC------CCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHH
Confidence 467888777665543332221 1111222322 2344455556666666666643 3 33 555666665
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCC-----------CCCCCCHHHHHHHHHhcCC
Q 001990 661 EYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD-----------AKGNINIEELRKAAEANRD 729 (985)
Q Consensus 661 ~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~-----------~~g~iDle~L~~~i~~~~~ 729 (985)
+..++.++. .++++|+++.+.|..+...++..|.+++.++++ .++.+|+++|+++++ +
T Consensus 98 ~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~---~ 166 (410)
T 3e2y_A 98 LFNSIQGLV--------DPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFS---S 166 (410)
T ss_dssp HHHHHHHHC--------CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCC---T
T ss_pred HHHHHHHhc--------CCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcC---C
Confidence 544433321 467899999888888877888899999999886 235689999999886 7
Q ss_pred CeEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cCC--CC----CCcCCCcEEEeCCcccccccC
Q 001990 730 NLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VGL--TS----PGYIGADVCHLNLHKTFCIPH 799 (985)
Q Consensus 730 ~t~~Vvi~~p-n~~G~i~--~di~eI~~la~~~g~lliVD~a~~~~~-~g~--~~----~g~~g~Di~~~s~hKtl~~p~ 799 (985)
++++|++++| |++|.+. .++++|+++|+++|+++|+|++|.... .+- .. ....+.++++.|++|+|+.
T Consensus 167 ~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~-- 244 (410)
T 3e2y_A 167 KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSV-- 244 (410)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSC--
T ss_pred CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCC--
Confidence 8999999999 4799983 269999999999999999999985211 110 01 1122345888888999853
Q ss_pred CCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHH------hchhhHHHHHH
Q 001990 800 GGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM------MGSKGLTEASK 873 (985)
Q Consensus 800 g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~------lg~~gl~~~~~ 873 (985)
+|.++|++++++++++.+.... ...+.+.+ .....++.+++.. ...+.+.+..+
T Consensus 245 --~G~r~G~~~~~~~~~~~~~~~~------------~~~~~~~~------~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 304 (410)
T 3e2y_A 245 --TGWKLGWSIGPAHLIKHLQTVQ------------QNSFYTCA------TPLQAALAEAFWIDIKRMDDPECYFNSLPK 304 (410)
T ss_dssp --GGGCCEEEECCHHHHHHHHHHH------------HTTTCCCC------HHHHHHHHHHHHHHHTTTTSTTSHHHHHHH
T ss_pred --CCceEEEEEECHHHHHHHHHHH------------HhhccCCC------hHHHHHHHHHHHhhhccccchHHHHHHHHH
Confidence 4678999999887665442100 00011111 1122223333432 12344666667
Q ss_pred HHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCC--------HHHHHHHH-HHCCCccCCCC-C--C
Q 001990 874 IAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIE--------PEDVAKRL-MDYGFHGPTMS-W--P 940 (985)
Q Consensus 874 ~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~--------~~~l~~~L-~e~Gi~~~~~~-~--p 940 (985)
+..++++++.+.|++ ++.+. .+.+..+ +.+++..+. .+.+ ..++.+.| .++||.+.... + +
T Consensus 305 ~~~~~~~~l~~~L~~~g~~~~--~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~ 378 (410)
T 3e2y_A 305 ELEVKRDRMVRLLNSVGLKPI--VPDGGYF--IIADVSSLG--ADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDS 378 (410)
T ss_dssp HHHHHHHHHHHHHHTTTCEEE--BCSBSSE--EEEECGGGC--CCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCT
T ss_pred HHHHHHHHHHHHHHHCCCeec--CCCccEE--EEEEchhhh--cccccccccccCHHHHHHHHHHHcCEEEeCchhhCCC
Confidence 778888999999987 44432 2222222 344543211 0111 24677765 56799874311 1 1
Q ss_pred -----CCCEEEEeccCCCCHHhhchHHHHHHHHHH
Q 001990 941 -----VPGTLMIEPTESESKVCHNREDLFFQILLS 970 (985)
Q Consensus 941 -----v~~~lris~t~~~t~eeId~~~~~i~aL~~ 970 (985)
..+.+|++++. ++++|+ ++++.|++
T Consensus 379 ~~~~~~~~~iRis~~~--~~e~l~---~~l~~l~~ 408 (410)
T 3e2y_A 379 KSKPHFEKLVRFCFIK--KDSTLD---AAEEIFRA 408 (410)
T ss_dssp TTHHHHTTEEEEECCC--CHHHHH---HHHHHHHT
T ss_pred CCCCCCCCEEEEEEcC--CHHHHH---HHHHHHHh
Confidence 14789999865 999999 99888864
No 201
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.76 E-value=4e-17 Score=187.08 Aligned_cols=277 Identities=13% Similarity=0.120 Sum_probs=193.9
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001990 207 QGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~ 286 (985)
.|..+...++++.+++++|.+. ..++.+||.++++++.++. +++|+|+++...|+++...++ ..|.+++.+
T Consensus 84 ~g~~~~~~~l~~~la~~~~~~~--~i~~~sGt~a~~~~l~~~~---~~gd~v~~~~~~~~~~~~~~~----~~g~~~~~~ 154 (399)
T 3tqx_A 84 CGTQTIHKELEKDISEFLGTDD--TILYSSCFDANGGLFETLL---GPEDAIISDELNHASIIDGIR----LCKAQRYRY 154 (399)
T ss_dssp CCCBHHHHHHHHHHHHHHTCSE--EEEESCHHHHHHTTHHHHC---CTTCEEEEETTCCHHHHHHHH----SCCSEEEEE
T ss_pred ccCchHHHHHHHHHHHHHCCCc--EEEECchHHHHHHHHHHhc---CCCCEEEECCcccHHHHHHHH----HcCCceeEe
Confidence 3444566778899999999873 5567777777666555442 378999999999999888764 468888877
Q ss_pred Cc---hhhhc-cCC------CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCCCC---------c
Q 001990 287 DL---KDIDY-KSG------DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPG---------E 346 (985)
Q Consensus 287 ~~---~~l~~-l~~------~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~p~---------~ 346 (985)
+. +++++ +.+ ++++|++.+| |++|.+.|+++|.++|+++|+++++| +..+.+.....+ .
T Consensus 155 ~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-e~~~~~~~~~~~~~~~~~~~~~ 233 (399)
T 3tqx_A 155 KNNAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVD-DSHAVGFIGENGRGTPEYCGVA 233 (399)
T ss_dssp CTTCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEE-CTTTTTTSSTTSCCHHHHHTCT
T ss_pred CCCCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEE-CCccccccCCCCCchHHhhCCC
Confidence 54 55554 432 7999999988 78999999999999999999999995 344455433221 1
Q ss_pred ccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhH
Q 001990 347 LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQA 425 (985)
Q Consensus 347 ~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~ 425 (985)
.+.|++++|. |+|++ .|| |++++++++++.+... ...|. ..++.| ...
T Consensus 234 ~~~di~~~s~sK~~~g-----~~g-G~~~~~~~~~~~~~~~----------~~~~~------------~~~~~~---~~~ 282 (399)
T 3tqx_A 234 DRVDILTGTLGKALGG-----ASG-GYTSGHKEIIEWLRNR----------SRPYL------------FSNTVA---PVI 282 (399)
T ss_dssp TCCSEEEEESSSSSCS-----SCC-EEEEECHHHHHHHHHH----------CHHHH------------SSCCCC---HHH
T ss_pred CCCcEEEecchHhccc-----Cce-EEEEcCHHHHHHHHHh----------Cccee------------ccCCCc---HHH
Confidence 2679999998 87752 233 8999998887765210 00000 011111 122
Q ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeee
Q 001990 426 LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVV 502 (985)
Q Consensus 426 l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~---~~~l~~~L~~~Gi~~~~~ 502 (985)
..+..+++ ..+. ++++++.++..++.+++++.|+++| +++.. +...-+.+..+. ..++.++|.++||.+...
T Consensus 283 ~~~~~~~l--~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~ 357 (399)
T 3tqx_A 283 VATSLKVL--ELLK-TEGPQLRKQLQENSRYFRAGMEKLG-FQLVP-GNHPIIPVMLGDAQLATNMADHLLQEGIYVVGF 357 (399)
T ss_dssp HHHHHHHH--HHHH-HTHHHHHHHHHHHHHHHHHHHHHHT-CCBCC-CSSSEEEEEEECHHHHHHHHHHHHHTTEECCEE
T ss_pred HHHHHHHH--HHHh-hccHHHHHHHHHHHHHHHHHHHHcC-CCcCC-CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEeee
Confidence 22333333 2222 5688999999999999999999987 77663 222234444443 688999999999987642
Q ss_pred -------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 503 -------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
..+.+|++++..+|++|+++++++|..
T Consensus 358 ~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 391 (399)
T 3tqx_A 358 SYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQ 391 (399)
T ss_dssp CTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHH
Confidence 125899999999999999999999974
No 202
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.76 E-value=6.9e-17 Score=183.70 Aligned_cols=279 Identities=15% Similarity=0.163 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCC-CCCcHHHHHhc-------CcE--
Q 001990 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSA-HGTNPATAAMC-------GMK-- 703 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~-Hg~~~~~~~~~-------G~~-- 703 (985)
..++++++++++|.+...+++++|++++..++.+++.+.. ++..++++||+++.. |+......... |+.
T Consensus 72 ~~~l~~~la~~~g~~~~v~~~~g~t~a~~~~~~~~~~~~~-~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 150 (375)
T 2eh6_A 72 QEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWR-DKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPL 150 (375)
T ss_dssp HHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHHH-HTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSC
T ss_pred HHHHHHHHHhhcCCCCeEEEeCchHHHHHHHHHHHHHHhc-cCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCC
Confidence 4578899999999843346677888877666554443321 111123788887754 65554444332 222
Q ss_pred ---EEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccccC
Q 001990 704 ---IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQVG 775 (985)
Q Consensus 704 ---v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~d----i~eI~~la~~~g~lliVD~a~~~~~~g 775 (985)
+..++. .|+++|+++++ +++++|++++| |++|.+. + +++|+++|+++|+++|+|++|. +++.
T Consensus 151 ~~~~~~~~~-----~d~~~l~~~l~---~~~~~v~~~~~~~~tG~~~-~~~~~l~~i~~~~~~~~~~li~De~~~-~~~~ 220 (375)
T 2eh6_A 151 VPGFSYAKL-----NDIDSVYKLLD---EETAGIIIEVIQGEGGVNE-ASEDFLSKLQEICKEKDVLLIIDEVQT-GIGR 220 (375)
T ss_dssp CSSEEEECT-----TCHHHHHTTCC---TTEEEEEECSEETTTTSEE-CCHHHHHHHHHHHHHHTCEEEEECTTT-TTTT
T ss_pred CCCceeCCC-----chHHHHHHHhc---CCeEEEEEeCccCCCCCcC-CCHHHHHHHHHHHHHhCCEEEEecccc-CCCC
Confidence 444554 48999999887 68999999877 4689986 6 9999999999999999999986 2221
Q ss_pred CC---CCCcCC--CcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhh
Q 001990 776 LT---SPGYIG--ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSA 850 (985)
Q Consensus 776 ~~---~~g~~g--~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~ 850 (985)
.. ....++ +|++++| |+|+ +|.++|++++++++.+.+.....+. +.++ +.
T Consensus 221 ~~~~~~~~~~~~~~d~~s~S--K~~~-----~g~~~G~~~~~~~~~~~~~~~~~~~--------------~~~~----~~ 275 (375)
T 2eh6_A 221 TGEFYAYQHFNLKPDVIALA--KGLG-----GGVPIGAILAREEVAQSFTPGSHGS--------------TFGG----NP 275 (375)
T ss_dssp TSSSSGGGGGTCCCSEEEEC--GGGG-----TTSCCEEEEEEHHHHTTCCTTSCCC--------------SSTT----CH
T ss_pred CCcchhhhhcCCCCCEEEEc--cccc-----CCCCeEEEEEcHHHHhhhcCCCCCC--------------CCCC----CH
Confidence 11 112345 8988765 8884 4578999999988776654321110 1111 11
Q ss_pred hHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHH
Q 001990 851 LILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 851 ~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e 929 (985)
....++.+.+..+. +..++..++++++.+.|++ +... ..+. +. .+.++++ .+..++.+.|.+
T Consensus 276 ~~~~~~~~~l~~~~-----~~~~~~~~~~~~l~~~L~~~~~~~-~~~~-g~---~~~~~~~-------~~~~~~~~~l~~ 338 (375)
T 2eh6_A 276 LACRAGTVVVDEVE-----KLLPHVREVGNYFKEKLKELGKGK-VKGR-GL---MLGLELE-------RECKDYVLKALE 338 (375)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTTSSE-EEEE-TT---EEEEECS-------SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCC-ceEE-EE---EEEEEEc-------CcHHHHHHHHHH
Confidence 22222334444332 3455667788899999977 2222 2111 11 2344543 145789999999
Q ss_pred CCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHH
Q 001990 930 YGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSL 971 (985)
Q Consensus 930 ~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i 971 (985)
+||.+.... ++.+|++++..+|++|++ +++++|+++
T Consensus 339 ~gi~~~~~~---~~~iRi~~~~~~~~~~i~---~~~~~l~~~ 374 (375)
T 2eh6_A 339 KGLLINCTA---GKVLRFLPPLIIQKEHID---RAISVLREI 374 (375)
T ss_dssp TTEECEEET---TTEEEECCCTTCCHHHHH---HHHHHHHHH
T ss_pred CCCEEecCC---CCEEEEECCCCCCHHHHH---HHHHHHHHh
Confidence 999875322 478999999899999999 999999865
No 203
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.76 E-value=4.2e-17 Score=190.79 Aligned_cols=306 Identities=13% Similarity=0.112 Sum_probs=192.5
Q ss_pred hcHHHHHHHHHHHHHHHhCC-Cccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEE
Q 001990 628 QGYQEMFNNLGEWLCTITGF-DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~-~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~ 705 (985)
+|..++.+.+.+++.+.+|. +... +++++|++++..++.++. .++++|+++.+.|..+...++..|++++
T Consensus 118 ~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~--------~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~ 189 (448)
T 3aow_A 118 KGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFL--------NPGDIVVVEAPTYLAALQAFNFYEPQYI 189 (448)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHC--------CTTCEEEEEESCCHHHHHHHHTTCCEEE
T ss_pred CCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHc--------CCCCEEEEeCCChHHHHHHHHHcCCEEE
Confidence 45445554555555444598 3333 555666665543333321 4678999988866666666778899999
Q ss_pred EEeCCCCCCCCHHHHHHHHHh---cCCCeEEEE-EEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEcccccccc-C--
Q 001990 706 SVGTDAKGNINIEELRKAAEA---NRDNLSTLM-VTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQV-G-- 775 (985)
Q Consensus 706 ~v~~~~~g~iDle~L~~~i~~---~~~~t~~Vv-i~~p-n~~G~i~~--di~eI~~la~~~g~lliVD~a~~~~~~-g-- 775 (985)
.+|.+++| +|+++|+++++. ..+++++|+ +.+| |++|.+.+ ++++|+++|+++|+++|+|+++..... +
T Consensus 190 ~v~~~~~g-~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~ 268 (448)
T 3aow_A 190 QIPLDDEG-MKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNP 268 (448)
T ss_dssp EEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCC
T ss_pred EeccCCCC-CCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCC
Confidence 99987765 899999999971 114788875 5677 57898862 478999999999999999999853221 1
Q ss_pred CCCC---CcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhH
Q 001990 776 LTSP---GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 776 ~~~~---g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~ 852 (985)
.... ...+.++.+.+++|+|+ | |.++|++++++++++.+...... . ..+++ ...
T Consensus 269 ~~~~~~~~~~~~vi~~~S~SK~~~-~----GlriG~v~~~~~l~~~l~~~~~~------------~--~~~~~----~~~ 325 (448)
T 3aow_A 269 EKKIKALDNEGRVIYLGTFSKILA-P----GFRIGWMVGDPGIIRKMEIAKQS------------T--DLCTN----VFG 325 (448)
T ss_dssp CCCTGGGCTTSCEEEEEESTTTTC-G----GGCCEEEEECHHHHHHHHHHHHH------------H--HSSCC----HHH
T ss_pred CcCHHhcCCCCCEEEEccchhhcc-c----cccEEEEEeCHHHHHHHHHHHHH------------h--cCCCC----HHH
Confidence 1111 12245678888999984 3 56689999998776544210000 0 01111 111
Q ss_pred HHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHHhccC--CeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHH
Q 001990 853 LPISYTYIAMMG-SKGLTEASKIAILNANYMAKRLEKHY--PILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 853 ~~~A~a~l~~lg-~~gl~~~~~~~~~~a~~l~~~L~~~~--~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e 929 (985)
..++.++|...+ .+.+.+..+...++++++.+.|++.+ .+.+..+.+.. .+.++++ .+.+..++.++|.+
T Consensus 326 q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~--~~~v~~~-----~~~~~~~l~~~l~~ 398 (448)
T 3aow_A 326 QVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGM--FIWVTLP-----DGIDSKKMLERAIK 398 (448)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSS--EEEEECS-----TTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccE--EEEEEcC-----CCCCHHHHHHHHHH
Confidence 222333343211 22344555566677888999887632 23332222222 2345554 24678899999999
Q ss_pred CCCccCCC-CC-C---CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHH
Q 001990 930 YGFHGPTM-SW-P---VPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 930 ~Gi~~~~~-~~-p---v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
+||.+... .+ + .++.+|++++. .+++||+ ++++.|++++++..
T Consensus 399 ~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~---~~~~~L~~~l~~~~ 446 (448)
T 3aow_A 399 KGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIM---EGIKRLAETIKEEL 446 (448)
T ss_dssp TTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHH---HHHHHHHHHHHHHH
T ss_pred CCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHH---HHHHHHHHHHHHHH
Confidence 99987432 12 1 24789999986 4899999 99999999887653
No 204
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.76 E-value=8.1e-17 Score=184.98 Aligned_cols=273 Identities=16% Similarity=0.146 Sum_probs=191.5
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--- 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~~--- 289 (985)
..++++.+|+++|.+ .+.++++||+++++++.++ .. +||+|++++..|+++...+..+++..|++++.++.+
T Consensus 68 ~~~l~~~la~~~g~~--~~~~~~sGt~A~~~al~~~-~~--~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~ 142 (392)
T 3qhx_A 68 RTALEAALAAVEDAA--FGRAFSSGMAAADCALRAM-LR--PGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALADLD 142 (392)
T ss_dssp HHHHHHHHHHHTTCS--EEEEESSHHHHHHHHHHHH-CC--TTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTTCHH
T ss_pred HHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHH-hC--CCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCCCHH
Confidence 456889999999987 4778899998888877655 23 789999999999999988877677789999999764
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001990 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~p~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ +++++++|++++| |.+|.+.|+++|+++||++|+++++| +.++.+....+..+|+|++++|. |.++++ |
T Consensus 143 ~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D-~~~~~~~~~~~~~~~~di~~~S~sK~lg~~---g 218 (392)
T 3qhx_A 143 AVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVD-NTFASPALQQPLSLGADVVLHSTTKYIGGH---S 218 (392)
T ss_dssp HHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEE-CTTTCTTTCCGGGGTCSEEEEETTTTTTCS---S
T ss_pred HHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEE-CCCcccccCChHHhCCcEEEEcCccccCCC---C
Confidence 5555 7889999999998 68999999999999999999999995 45555666667789999999998 777532 2
Q ss_pred CCceEEEEEc-hhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHH
Q 001990 367 GPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 367 GP~~G~l~~~-~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~ 445 (985)
++-+|+++++ +++.+.+.. .++..+. .. .++.+.. ...+.+.+..
T Consensus 219 ~~~~G~v~~~~~~~~~~l~~-------------------------~~~~~g~--~~--~~~~~~~-----~~~~l~~l~~ 264 (392)
T 3qhx_A 219 DVVGGALVTNDEELDQSFAF-------------------------LQNGAGA--VP--GPFDAYL-----TMRGLKTLVL 264 (392)
T ss_dssp CCCCEEEEESCHHHHHHHHH-------------------------HHHHHCC--CC--CHHHHHH-----HHHHHTTHHH
T ss_pred CceEEEEEECcHHHHHHHHH-------------------------HHHhcCC--CC--CHHHHHH-----HHhhhhHHHH
Confidence 1236888887 466554310 0000010 00 1221111 1112234566
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEc-CC-----CC-----------cceEEEecCC----HHHHHHHHHHcCceee----
Q 001990 446 IAQRVHGLAGTFALGLKKLGTVEVQ-GL-----PF-----------FDTVKVKCAD----AHAIASAAYKIEMNLR---- 500 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~~~-~~-----~~-----------~~~~~i~~~~----~~~l~~~L~~~Gi~~~---- 500 (985)
..++..+++.++++.|++...+..+ .+ +. ...+.|.+++ +..+.+.|...|+.++
T Consensus 265 ~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~ 344 (392)
T 3qhx_A 265 RMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLGSV 344 (392)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCCCCS
T ss_pred HHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCCCCC
Confidence 6778888999999999987435432 11 11 2246676654 4555555554554321
Q ss_pred ------e--------------ecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001990 501 ------V--------------VDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 501 ------~--------------~~~~~lris~~~~~t~edid~ll~~l~ 528 (985)
. +.++.||+|++..+++++|+.|.++|.
T Consensus 345 ~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al~ 392 (392)
T 3qhx_A 345 ESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQALG 392 (392)
T ss_dssp SCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred CceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHhC
Confidence 0 125779999999999999999998873
No 205
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.76 E-value=1.2e-17 Score=190.00 Aligned_cols=293 Identities=13% Similarity=0.102 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHhC--CCccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeC
Q 001990 633 MFNNLGEWLCTITG--FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT 709 (985)
Q Consensus 633 ~~~el~~~la~l~G--~~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~ 709 (985)
+.+.+.+++.+.+| .+... +++++|++++..++.++. .++++|+++.+.|..+...++..|++++.+|.
T Consensus 63 lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~--------~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~ 134 (377)
T 3fdb_A 63 LSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFT--------PAQSKVIVPTPAYPPFFHLLSATQREGIFIDA 134 (377)
T ss_dssp HHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS--------CTTCCEEEEESCCTHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhc--------CCCCEEEEcCCCcHhHHHHHHHcCCEEEEccC
Confidence 44455555555555 33433 555666666544433321 36688999888777777777889999999999
Q ss_pred CCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cC-CC--CCC--
Q 001990 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VG-LT--SPG-- 780 (985)
Q Consensus 710 ~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~--di~eI~~la~~~g~lliVD~a~~~~~-~g-~~--~~g-- 780 (985)
+++ +|+++|+++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++|+|++|.... .+ -. ...
T Consensus 135 ~~~--~d~~~l~~~l~---~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 209 (377)
T 3fdb_A 135 TGG--INLHDVEKGFQ---AGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSD 209 (377)
T ss_dssp TTS--CCHHHHHHHHH---TTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCH
T ss_pred CCC--CCHHHHHHHhc---cCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHc
Confidence 776 99999999998 67889999999 57898862 48888888999999999999985311 11 00 000
Q ss_pred -cCCCcEEEeCCcccccccCCCCCCcceeeee-cccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHH
Q 001990 781 -YIGADVCHLNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 781 -~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~-~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a 858 (985)
..+.++++.|++|+|+. +|.++|++++ ++++.+.+.... . ..+.+ . +.....++.+
T Consensus 210 ~~~~~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~~-~-----------~~~~~--~----~~~~~~a~~~ 267 (377)
T 3fdb_A 210 TAASVCITITAPSKAWNI----AGLKCAQIIFSNPSDAEHWQQLS-P-----------VIKDG--A----STLGLIAAEA 267 (377)
T ss_dssp HHHHHEEEEECSTTTTTC----GGGCCEEEECCSHHHHHHHHHSC-H-----------HHHCC--C----CHHHHHHHHH
T ss_pred cCCCcEEEEEeChHhccC----cchhheEEEeCCHHHHHHHHHHH-H-----------hhcCC--C----CHHHHHHHHH
Confidence 12234888899999843 4667897776 555554432100 0 00001 1 1122222333
Q ss_pred HHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHC-CCccCC
Q 001990 859 YIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY-GFHGPT 936 (985)
Q Consensus 859 ~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~-Gi~~~~ 936 (985)
.+.. +.+.+.+..++..++++++.+.|++ ...+....+.+..+ +.++++. .+.+ .++.+.|.++ ||.+..
T Consensus 268 ~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~-~~~~~~l~~~~gi~v~~ 339 (377)
T 3fdb_A 268 AYRY-GTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQATYL--MWIDFRD----TTIE-GSPSEFFIEKAKVAMND 339 (377)
T ss_dssp HHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSBCSE--EEEECTT----SCCC-SCHHHHHHHHHCEECEE
T ss_pred HHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCeeEE--EEEECcc----cCCC-HHHHHHHHHhCCEEecC
Confidence 3432 3445666777788888999999976 22333323222221 2356541 1233 4567777665 998743
Q ss_pred CC-C--CCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHH
Q 001990 937 MS-W--PVPGTLMIEPTESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 937 ~~-~--pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
.. + +.++.+|++++ +++++++ ++++.|+++++
T Consensus 340 g~~~~~~~~~~~Ris~~--~~~e~i~---~~l~~l~~~l~ 374 (377)
T 3fdb_A 340 GAWFGEDGTGFCRLNFA--TSREVLE---EAIDRMAKAVS 374 (377)
T ss_dssp GGGGCGGGTTEEEEECC--SCHHHHH---HHHHHHHHHHT
T ss_pred ChhccCCCCCEEEEEeC--CCHHHHH---HHHHHHHHHHh
Confidence 21 1 12589999987 4899999 99999988765
No 206
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.76 E-value=4.2e-16 Score=176.50 Aligned_cols=297 Identities=11% Similarity=0.025 Sum_probs=204.8
Q ss_pred CCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhh
Q 001990 172 GMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ 251 (985)
Q Consensus 172 G~g~~~~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~ 251 (985)
+.|..|...|+.+.+++.+.-+ .+.-|. . ....++++.+|+++|.++.++.+++|+|.+++.++.++ ..
T Consensus 38 ~~~~~~~~~~~~v~~a~~~~~~---~~~~y~-~------~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~-~~ 106 (363)
T 3ffh_A 38 SSNENPLGTSKKVAAIQANSSV---ETEIYP-D------GWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVL-LD 106 (363)
T ss_dssp SSCSCTTCCCHHHHHHHHTCBS---CCCBC-----------CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH-CS
T ss_pred cCCCCCCCCCHHHHHHHHHHHH---HhhcCC-C------cchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHH-cc
Confidence 4555565577777666655322 222231 1 12356889999999998889999999999988877665 23
Q ss_pred cCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHH
Q 001990 252 KGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKN 321 (985)
Q Consensus 252 ~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~--------~~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~ 321 (985)
+||+|+++...|+++...++. .|.+++.++. +++++ +++++++|++.+| |.+|.+.|++++.++
T Consensus 107 --~gd~vl~~~~~~~~~~~~~~~----~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~~~~l~~l 180 (363)
T 3ffh_A 107 --TTTNTVMATPTFVQYRQNALI----EGAEVREIPLLQDGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIELADIQAF 180 (363)
T ss_dssp --TTCEEEEEESSCHHHHHHHHH----HTCEEEEEECCTTSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred --CCCEEEEcCCChHHHHHHHHH----cCCEEEEecCCCCCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCcCHHHHHHH
Confidence 789999999999998887654 4778877754 45556 7889999999998 679999999999999
Q ss_pred HHhC--CcEEEEEeccccccCCC---C----CCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeee
Q 001990 322 AHAN--GVKVVMATDLLALTILK---P----PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVS 391 (985)
Q Consensus 322 a~~~--galliV~a~~~alg~l~---~----p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s 391 (985)
++.+ |+++++|. ..+..... . ....+-+++++|. |.++.| |-.+|++++++++.+.+...
T Consensus 181 ~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~l~~~----- 250 (363)
T 3ffh_A 181 LDRVPSDVLVVLDE-AYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLA----SARVGYGIADKEIIRQLNIV----- 250 (363)
T ss_dssp HTTSCTTSEEEEEC-TTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCS----SCCCEEEEECHHHHHHHHHT-----
T ss_pred HHhCCCCcEEEEeC-chHhhcCccccCHHHHhhcCCCEEEEeechhhhcCc----hhceeeeecCHHHHHHHHHh-----
Confidence 9988 99999952 33311111 1 1223455778776 776532 33459999998887765110
Q ss_pred ecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhc-CCCEEEc
Q 001990 392 IDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQ 470 (985)
Q Consensus 392 ~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~ 470 (985)
+...+.| .....+..+++ . ..+.++++.++..++.+++.+.|++ .| +++.
T Consensus 251 ---------------------~~~~~~~---~~~~~~~~~~l--~--~~~~~~~~~~~~~~~~~~l~~~l~~~~g-~~~~ 301 (363)
T 3ffh_A 251 ---------------------RPPFNTT---SIGQKLAIEAI--K--DQAFIGECRTSNANGIKQYEAFAKRFEK-VKLY 301 (363)
T ss_dssp ---------------------CCSCCCB---HHHHHHHHHHH--H--CHHHHHHHHHHHHHHHHHHHHHHHHCTT-CEEC
T ss_pred ---------------------CCCCCCC---HHHHHHHHHHh--c--CHHHHHHHHHHHHHHHHHHHHHHhhCCC-ceEC
Confidence 0000111 11222222222 2 3366888999999999999999999 56 8876
Q ss_pred CCCCcceEEEecCC-HHHHHHHHHHcCceeeee----cCCeEEEEeccCCCHHHHHHHHHHHh
Q 001990 471 GLPFFDTVKVKCAD-AHAIASAAYKIEMNLRVV----DSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 471 ~~~~~~~~~i~~~~-~~~l~~~L~~~Gi~~~~~----~~~~lris~~~~~t~edid~ll~~l~ 528 (985)
... ..-+.+.++. ..++.++|.++||.++.. .++.+|++++ |++|+++++++|.
T Consensus 302 ~~~-~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~l~ 360 (363)
T 3ffh_A 302 PAN-GNFVLIDLGIEAGTIFSYLEKNGYITRSGAALGFPTAVRITIG---KEEDNSAVIALLE 360 (363)
T ss_dssp CCC-SSEEEEECSSCHHHHHHHHHHTTEECEETTTTTCTTEEEEECC---CHHHHHHHHHHHH
T ss_pred CCC-CeEEEEECCCCHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC---CHHHHHHHHHHHH
Confidence 422 2235566664 889999999999988653 2589999987 9999999999986
No 207
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.76 E-value=1e-16 Score=186.18 Aligned_cols=293 Identities=14% Similarity=0.109 Sum_probs=200.2
Q ss_pred HhhHHHHHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhh--hhc---CCC-------------CEEEEcCCCCh
Q 001990 205 IAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN--IQK---GKK-------------KTFIIASNCHP 266 (985)
Q Consensus 205 ~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~--~~~---~~g-------------~~Vlv~~~~h~ 266 (985)
.+++..+.+.++++.+|+++|.++.++.+++|+|.+++.++.++. +.. ++| ++|+++..+|+
T Consensus 55 ~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~ 134 (432)
T 3a9z_A 55 AGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHD 134 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcch
Confidence 345667788899999999999987789899999999888776652 100 144 58999999999
Q ss_pred hHHHHHHHhhcCCCeEEEEeCc---------hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCC---------
Q 001990 267 QTIDICITRADGFDIKVVVSDL---------KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANG--------- 326 (985)
Q Consensus 267 s~~~~~~~~a~~~gi~v~~~~~---------~~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~g--------- 326 (985)
++...+..+++..|.+++.++. ++|++ +++++++|++++| |.+|.+.|+++|.++|+++|
T Consensus 135 s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~ 214 (432)
T 3a9z_A 135 SIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLP 214 (432)
T ss_dssp HHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhccCCceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCC
Confidence 9999998777777899888764 34555 7788999999988 68999999999999999999
Q ss_pred -cEEEEEeccccccCCC-CCCcccceEEEecC-ccccccCCCCCCceEEEEEchhh-HhcCCCceeeeeecCCCCcceEE
Q 001990 327 -VKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEY-KRMMPGRIVGVSIDSSGKPALRV 402 (985)
Q Consensus 327 -alliV~a~~~alg~l~-~p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~-~~~lp~~~vG~s~d~~g~~~~~l 402 (985)
+++++| ...+.+... +..++++|++++|. |.+ ||.+|+++++++. ...+.+...|+ .
T Consensus 215 ~~~livD-ea~~~~~~~~~~~~~~~d~~~~s~~K~~-------g~~~G~~~~~~~~~~~~~~~~~~~~------~----- 275 (432)
T 3a9z_A 215 RVLVHTD-AAQALGKRRVDVEDLGVDFLTIVGHKFY-------GPRIGALYVRGVGKLTPLYPMLFGG------G----- 275 (432)
T ss_dssp CCEEEEE-CTTTTTTSCCCHHHHCCSEEEEEGGGTT-------CCSCEEEEETTBTTTBCCCCSCCSS------C-----
T ss_pred ceEEEEE-chhhhCCcccChhhcCCCEEEEehhHhc-------CCcceEEEEccccccCCcCceeecC------C-----
Confidence 999995 334554322 11246899999988 643 2458999998765 33332222221 0
Q ss_pred ecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcC-CCEEE--cCC----CCc
Q 001990 403 AMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL-GTVEV--QGL----PFF 475 (985)
Q Consensus 403 ~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~-g~~~~--~~~----~~~ 475 (985)
+..+++.+|.|. ....++.+++ .++ .++++++.++..++++++.+.|+++ | +++ ..+ ...
T Consensus 276 ------~~~~~~~~~~~~---~~~~a~~aal--~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~g-~~~~~~~~~~~~~~~ 342 (432)
T 3a9z_A 276 ------QERNFRPGTENT---PMIAGLGKAA--DLV-SENCETYEAHMRDIRDYLEERLEAEFG-KRIHLNSRFPGVERL 342 (432)
T ss_dssp ------GGGGTSCSCCCH---HHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHG-GGEEESSCCTTCCBC
T ss_pred ------ccccccCCCcCH---HHHHHHHHHH--HHH-HhhHHHHHHHHHHHHHHHHHHHHhccC-CcEEEeCCCCcccCC
Confidence 011234456554 3344444444 222 3478899999999999999999885 4 433 221 111
Q ss_pred -ceEEEecCC----HHHHHHHHH----HcCceeee------------------ecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001990 476 -DTVKVKCAD----AHAIASAAY----KIEMNLRV------------------VDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 476 -~~~~i~~~~----~~~l~~~L~----~~Gi~~~~------------------~~~~~lris~~~~~t~edid~ll~~l~ 528 (985)
..+.|.+++ ..++.+.|. +.|+.+.. ...+.+|++++.++|++|+++++++|+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~ 422 (432)
T 3a9z_A 343 PNTCNFSIQGSQLRGYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLK 422 (432)
T ss_dssp TTEEEEEECSTTCCHHHHHHHCSSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHhcCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 134444332 555655442 12332211 013789999999999999999999997
Q ss_pred C
Q 001990 529 G 529 (985)
Q Consensus 529 ~ 529 (985)
.
T Consensus 423 ~ 423 (432)
T 3a9z_A 423 Q 423 (432)
T ss_dssp H
T ss_pred H
Confidence 4
No 208
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.76 E-value=6.5e-17 Score=184.08 Aligned_cols=279 Identities=13% Similarity=0.063 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001990 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~--- 288 (985)
...++++.+|+++|.+ ++.++++||.+++.++.++... +||+|+++...|+++...++. .|++++.++.
T Consensus 37 ~~~~l~~~la~~~~~~--~~i~~~sgt~al~~~l~~l~~~--~gd~Vi~~~~~~~~~~~~~~~----~g~~~~~~~~~~~ 108 (373)
T 3frk_A 37 EDKKFEQEFADYCNVN--YCIGCGNGLDALHLILKGYDIG--FGDEVIVPSNTFIATALAVSY----TGAKPIFVEPDIR 108 (373)
T ss_dssp HHHHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHTTCC--TTCEEEEETTSCTHHHHHHHH----HSCEEEEECEETT
T ss_pred hHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcCCC--CcCEEEECCCCcHHHHHHHHH----cCCEEEEEecccc
Confidence 4567889999999987 4778899999888887766433 789999999999999988754 3777777654
Q ss_pred ------hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCCCCccc--ceEEEec--C-
Q 001990 289 ------KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELG--ADIVVGS--A- 356 (985)
Q Consensus 289 ------~~l~~-l~~~t~~V~v~~pn~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~p~~~G--aDi~v~s--~- 356 (985)
+++++ +++++++|++++ ++|.+.|+++|.++|+++|+++++| +..+.|.......+| +|+++.| +
T Consensus 109 ~~~~d~~~l~~~l~~~~~~v~~~n--~~G~~~~l~~i~~l~~~~~~~li~D-~a~~~g~~~~~~~~~~~~d~~~~S~~~~ 185 (373)
T 3frk_A 109 TYNIDPSLIESAITEKTKAIIAVH--LYGQPADMDEIKRIAKKYNLKLIED-AAQAHGSLYKGMKVGSLGDAAGFSFYPA 185 (373)
T ss_dssp TTEECGGGTGGGCCTTEEEEEEEC--CTTCCCCHHHHHHHHHHHTCEEEEE-CTTCTTCEETTEETTSSSSEEEEECCTT
T ss_pred ccCcCHHHHHHhcCCCCeEEEEEC--CCcCcccHHHHHHHHHHcCCEEEEE-CCcccCCEECCEeccccccEEEEeCcCC
Confidence 34555 778999998654 6899999999999999999999995 344555433333456 7999988 5
Q ss_pred ccccccCCCCCCceEEEEEch-hhHhcCCCceeeeeecCCCCc-ceEEecccccccccccccCCCccchhHHHHHHHHHH
Q 001990 357 QRFGVPMGYGGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKP-ALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY 434 (985)
Q Consensus 357 k~lg~P~~~GGP~~G~l~~~~-~~~~~lp~~~vG~s~d~~g~~-~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y 434 (985)
|.++. .+ ..|++++++ ++.+.+.....+ |.. .|.. ...|. |. .+.++.+++
T Consensus 186 K~l~~-~g----~gg~~~~~~~~~~~~~~~~~~~------g~~~~~~~----------~~~g~-~~----~~~~~~aa~- 238 (373)
T 3frk_A 186 KNLGS-LG----DGGAVVTNDKDLAEKIKALSNY------GSEKKYHH----------IYKGF-NS----RLDELQAGF- 238 (373)
T ss_dssp SSSCC-SS----SCEEEEESCHHHHHHHHHHHBT------TCSBTTBC----------CSCCC-BC----CCCHHHHHH-
T ss_pred CccCc-cc----eeEEEEeCCHHHHHHHHHHHhc------CcccCCcc----------ccccc-cC----CCCHHHHHH-
Confidence 65542 11 246777764 454443211111 100 0100 01111 11 111223333
Q ss_pred HHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCC-----CCcceEEEecCCHHHHHHHHHHcCceeeeec------
Q 001990 435 AVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-----PFFDTVKVKCADAHAIASAAYKIEMNLRVVD------ 503 (985)
Q Consensus 435 ~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-----~~~~~~~i~~~~~~~l~~~L~~~Gi~~~~~~------ 503 (985)
.+...++++++.++..++++++++.|++++ +++... ..+..+.+..+...++.+.|.++||.++...
T Consensus 239 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~ 316 (373)
T 3frk_A 239 -LRVKLKYLDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRSEKRDELQKYLNNNGIGTLIHYPIPIHL 316 (373)
T ss_dssp -HHHHHHTHHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEESSHHHHHHHHHHTTBCCBCSCSSCGGG
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEeCCHHHHHHHHHHCCCCcccCcCCcccc
Confidence 222235778889999999999999999987 776532 1223455555458899999999999875321
Q ss_pred ---------------------CCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001990 504 ---------------------SNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 504 ---------------------~~~lris~~~~~t~edid~ll~~l~~~ 530 (985)
.+.+|++++.++|++|+++++++|+.-
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~ 364 (373)
T 3frk_A 317 QQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAW 364 (373)
T ss_dssp SGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTC
T ss_pred ChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHH
Confidence 167999999999999999999999864
No 209
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.76 E-value=2.5e-16 Score=184.75 Aligned_cols=307 Identities=14% Similarity=0.140 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHHhCCCcc-ceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCCCcHHHHHhcC--------
Q 001990 632 EMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG-------- 701 (985)
Q Consensus 632 ~~~~el~~~la~l~G~~~~-~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv-~~~~Hg~~~~~~~~~G-------- 701 (985)
+...+++++++++++.+.. .++.+||++++++++.+++.|...+|..++++||+ ...+||.........|
T Consensus 95 ~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~ 174 (460)
T 3gju_A 95 EASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAF 174 (460)
T ss_dssp HHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTT
T ss_pred HHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCccccccc
Confidence 3566889999999865543 46778999999899888888776666556677876 5567887765543322
Q ss_pred ----cEEEEEeCCC-----CCCCC--------HHHHHHHHHhcC-CCeEEEEEEcCC-CccccccC---HHHHHHHHHHc
Q 001990 702 ----MKIVSVGTDA-----KGNIN--------IEELRKAAEANR-DNLSTLMVTYPS-THGVYEEG---IDEICKIIHDN 759 (985)
Q Consensus 702 ----~~v~~v~~~~-----~g~iD--------le~L~~~i~~~~-~~t~~Vvi~~pn-~~G~i~~d---i~eI~~la~~~ 759 (985)
..+..++... +...| +++|++++++.. +++++|+++.++ +.|.+.++ +++|+++|++|
T Consensus 175 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~ 254 (460)
T 3gju_A 175 DLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKY 254 (460)
T ss_dssp TCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT
T ss_pred CCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHc
Confidence 1344555321 11123 689999987433 456777766543 56765511 99999999999
Q ss_pred CCEEEEEccccccccCCCCCCc--------CCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCC-----Ccccc
Q 001990 760 GGQVYMDGANMNAQVGLTSPGY--------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS-----HPVVS 826 (985)
Q Consensus 760 g~lliVD~a~~~~~~g~~~~g~--------~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg-----~~~g~ 826 (985)
|++||+|+++. ++.+.+. ..+|+++++ |+++ +|+.++|++++++++++.+.. ..+.
T Consensus 255 ~~llI~DEv~~----g~gr~g~~~~~~~~~~~pdi~t~s--K~l~----gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~- 323 (460)
T 3gju_A 255 DVLLVADEVVT----GFGRLGTMFGSDHYGIKPDLITIA--KGLT----SAYAPLSGVIVADRVWQVLVQGSDKLGSLG- 323 (460)
T ss_dssp TCEEEEECTTT----TTTTTSSSCHHHHHTCCCSEEEEC--GGGT----TTSSCCEEEEEEHHHHHHHHHHHHHHCSCS-
T ss_pred CCEEEEecccc----CCCcccccchHhhcCCCCCeeeee--hhhc----CCCCCeEEEEECHHHHHHHhcccccccccc-
Confidence 99999999874 2222221 236888764 8873 333688999999887665421 0000
Q ss_pred CCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc---cCC-ee-EcCCCCce
Q 001990 827 TGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---HYP-IL-FRGVNGTV 901 (985)
Q Consensus 827 ~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~---~~~-i~-~~g~~~~~ 901 (985)
+ + .+.+ +++..++++.+.+..+..+++. ++..++.++++++|.+ .+. +. ..+ .+.+
T Consensus 324 ------~----~-~t~~----~~~~~~aaa~aal~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~g~~ 384 (460)
T 3gju_A 324 ------H----G-WTYS----AHPICVAAGVANLELIDEMDLV---TNAGETGAYFRAELAKAVGGHKNVGEVRG-DGML 384 (460)
T ss_dssp ------C----C-CTTT----TCHHHHHHHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHHHHTTSTTEEEEEE-ETTE
T ss_pred ------c----C-CCCC----CCHHHHHHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHHHHhcCCCeEEEee-eeEE
Confidence 0 0 1111 2344455566667665444433 3445555666666643 122 11 111 1121
Q ss_pred eEEEEEEecCccc-c-----CCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 902 AHEFIVDLRGLKN-T-----AGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 902 ~~~~vv~~~~~~~-~-----~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
+.+.+..... . ......++.+.|.++|+.+..... .+.+||+|+..+|++|++ +++++|+++++++
T Consensus 385 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~iRi~~~~~~t~e~i~---~~l~~l~~~l~~~ 456 (460)
T 3gju_A 385 ---AAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQ--GDILGFAPPLCLTREQAD---IVVSKTADAVKSV 456 (460)
T ss_dssp ---EEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECSS--SCEEEECCCTTCCHHHHH---HHHHHHHHHHHHH
T ss_pred ---EEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCCC--CCEEEEECCCCCCHHHHH---HHHHHHHHHHHHH
Confidence 2233321000 0 001156789999999998754331 389999999999999999 9999999998876
Q ss_pred H
Q 001990 976 T 976 (985)
Q Consensus 976 ~ 976 (985)
.
T Consensus 457 ~ 457 (460)
T 3gju_A 457 F 457 (460)
T ss_dssp H
T ss_pred H
Confidence 4
No 210
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.75 E-value=3.5e-17 Score=198.79 Aligned_cols=301 Identities=15% Similarity=0.104 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCCC
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~~ 712 (985)
.+.++++.+|+++|.+.+.+++|++++|+.++++++. +++|+||+++..|.++...+.+.|+++++++.+.+
T Consensus 196 ~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~--------~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~~ 267 (715)
T 3n75_A 196 PHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSA--------PAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTRN 267 (715)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHC--------CTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCBC
T ss_pred HHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhC--------CCCCEEEECCCccHHHHHHHHHcCCEEEEEecccc
Confidence 4789999999999999876666666677765555442 47899999999998888888899999999987533
Q ss_pred -----CCC-----CHHHHHHHHHhcCCCeE---EEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccc--cCCC
Q 001990 713 -----GNI-----NIEELRKAAEANRDNLS---TLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ--VGLT 777 (985)
Q Consensus 713 -----g~i-----Dle~L~~~i~~~~~~t~---~Vvi~~pn~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~--~g~~ 777 (985)
+.+ |+++|+++++++ ++++ +|++++||++|.+. |+++|+++|++++ ++||+||..+. ++..
T Consensus 268 ~~gi~~~i~~~~~d~e~Le~~l~~~-~~~k~p~~vivt~pn~~G~v~-dl~~I~ela~~~~--livDEAH~~~~~f~~~~ 343 (715)
T 3n75_A 268 AYGILGGIPQSEFQHATIAKRVKET-PNATWPVHAVITNSTYDGLLY-NTDFIKKTLDVKS--IHFDSAWVPYTNFSPIY 343 (715)
T ss_dssp TTCCBCCCCGGGGSHHHHHHHHHHS-TTCCSCSEEEEESSCTTSEEE-CHHHHHHHCCCSE--EEEECTTCTTGGGSGGG
T ss_pred ccccccCcccccCCHHHHHHHHhhC-cCccCceEEEEECCCCCCccC-CHHHHHHHhCcCc--EEEccccccccccCCcc
Confidence 224 899999999864 3444 89999999999998 8999999998763 78999996432 1111
Q ss_pred ---CCCcCC--CcEE---EeCCcccccccCCCCCC-cceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccch
Q 001990 778 ---SPGYIG--ADVC---HLNLHKTFCIPHGGGGP-GMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 778 ---~~g~~g--~Di~---~~s~hKtl~~p~g~GGP-g~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g 848 (985)
.+...+ +|++ +.|+||+++ || ++|++.+++.+....-..... ....|++
T Consensus 344 ~~~~al~~g~~aD~vii~~~S~hKtL~------gltqgs~i~v~~~i~~~~~~~~~~---------~~~STSp------- 401 (715)
T 3n75_A 344 EGKCGMSGGRVEGKVIYETQSTHKLLA------AFSQASMIHVKGDVNEETFNEAYM---------MHTTTSP------- 401 (715)
T ss_dssp TTSSTTSSSCCTTCEEEEEECHHHHSS------CCTTCEEEEEESCCCHHHHHHHHH---------HTSCSSC-------
T ss_pred ccccccccCcCCCEEEEEEeccccccc------CCCCeeEEEeCchhhHHHHHHHHH---------hhcCCCc-------
Confidence 111223 6866 899999984 44 678888876521110000000 0001111
Q ss_pred hhhHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHHhcc--------CCeeEcC-----------------------
Q 001990 849 SALILPISYTYIAMMGS-KGLTEASKIAILNANYMAKRLEKH--------YPILFRG----------------------- 896 (985)
Q Consensus 849 ~~~~~~~A~a~l~~lg~-~gl~~~~~~~~~~a~~l~~~L~~~--------~~i~~~g----------------------- 896 (985)
+...+++.-+.++.+.. +| .+..++..+++++++++|++. +.+.-+.
T Consensus 402 sy~~~AsldaA~~~~~~~~g-~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~ 480 (715)
T 3n75_A 402 HYGIVASTETAAAMMKGNAG-KRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNID 480 (715)
T ss_dssp CHHHHHHHHHHHHHHSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCC
T ss_pred hHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccc
Confidence 11222222223333332 33 335677888899999988752 1111000
Q ss_pred CC----CceeEEEEEEecCcc-----ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHH
Q 001990 897 VN----GTVAHEFIVDLRGLK-----NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQI 967 (985)
Q Consensus 897 ~~----~~~~~~~vv~~~~~~-----~~~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~a 967 (985)
.+ ++. -+++.++++. ...|+++..+.+.|+++||.+.-.. ...+.+-+|...|+++++ +++++
T Consensus 481 ~~~~~~Dp~--Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d---~~~vl~l~s~g~~~~~~~---~L~~a 552 (715)
T 3n75_A 481 NEHMYLDPI--KVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTG---PYNLLFLFSIGIDKTKAL---SLLRA 552 (715)
T ss_dssp SSSEEECTT--EEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEE---TTEEEEECCTTCCHHHHH---HHHHH
T ss_pred cCcccCCCe--EEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecC---CCcEEEEeCCCCCHHHHH---HHHHH
Confidence 00 111 1334443211 1126888999999999999975332 367888889999999999 99999
Q ss_pred HHHHHHHHH
Q 001990 968 LLSLTKFTT 976 (985)
Q Consensus 968 L~~i~~~~~ 976 (985)
|.++.+...
T Consensus 553 L~~~~~~~~ 561 (715)
T 3n75_A 553 LTDFKRAFD 561 (715)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 998866543
No 211
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.75 E-value=1.6e-16 Score=184.63 Aligned_cols=300 Identities=13% Similarity=0.120 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHhCCCcc-ceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCCCcHHHHHhcC----------
Q 001990 634 FNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPATAAMCG---------- 701 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~-~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~-~~Hg~~~~~~~~~G---------- 701 (985)
..++++.++++++.+.. .++.++|++++..++.+++.+...+|. ++++||+++ .+|+.....+...|
T Consensus 88 ~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~-~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~ 166 (429)
T 1s0a_A 88 AIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGE-ARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWK 166 (429)
T ss_dssp HHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTC-CCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGT
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCC-CCCeEEEECCCCCCCchhhhhhcCCchhhccccc
Confidence 45788889999976543 466788888887776666554333342 467888876 57776554443222
Q ss_pred ---cEEEEEeCCC------CCCCCHHHHHHHHHhcCCCeEEEEEEcC--CCccccccC----HHHHHHHHHHcCCEEEEE
Q 001990 702 ---MKIVSVGTDA------KGNINIEELRKAAEANRDNLSTLMVTYP--STHGVYEEG----IDEICKIIHDNGGQVYMD 766 (985)
Q Consensus 702 ---~~v~~v~~~~------~g~iDle~L~~~i~~~~~~t~~Vvi~~p--n~~G~i~~d----i~eI~~la~~~g~lliVD 766 (985)
..++.++++. .+.+|+++|+++++++.+++++|+++.+ |++|.+. + +++|+++|+++|+++|+|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~-~~~~~l~~i~~l~~~~~~~li~D 245 (429)
T 1s0a_A 167 GYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRM-YHPEWLKRIRKICDREGILLIAD 245 (429)
T ss_dssp TTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEE-BCTHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCccc-CCHHHHHHHHHHHHHcCCEEEEe
Confidence 1344555531 2468999999999854456777666543 3589765 4 999999999999999999
Q ss_pred cccc-ccccCCC---CCCcCCCcEEEeCCcccccccCCCCC-CcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCC
Q 001990 767 GANM-NAQVGLT---SPGYIGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGT 841 (985)
Q Consensus 767 ~a~~-~~~~g~~---~~g~~g~Di~~~s~hKtl~~p~g~GG-Pg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~ 841 (985)
++|. .+..+.. ......+|++++| |+|+ || .++|++++++++.+.+.....+. . ...++
T Consensus 246 e~~~~~g~~g~~~~~~~~~~~~d~~t~s--K~l~-----~G~~~iG~~~~~~~~~~~l~~~~~~~------~-~~~~t-- 309 (429)
T 1s0a_A 246 EIATGFGRTGKLFACEHAEIAPDILCLG--KALT-----GGTMTLSATLTTREVAETISNGEAGC------F-MHGPT-- 309 (429)
T ss_dssp CTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGG-----TSSSCCEEEEECHHHHHHHHTSTTSS------C-SCCCT--
T ss_pred ehhhCCcccchHHHhhhcCCCCCEEEec--cccc-----CCCccceEEEeCHHHHHHhhcCCCcc------c-ccCCC--
Confidence 9985 2211110 0012357888654 8874 45 67999999887665442210000 0 00011
Q ss_pred cccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc--C-Cee-EcCCCCceeEEEEEEecCccccCC
Q 001990 842 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH--Y-PIL-FRGVNGTVAHEFIVDLRGLKNTAG 917 (985)
Q Consensus 842 i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~--~-~i~-~~g~~~~~~~~~vv~~~~~~~~~g 917 (985)
.+ +++..++++.+++..+.+++ ..++..++++++.++|++. + .+. ..+. +. .+.+++.. +
T Consensus 310 ~~----~n~~~~~a~~aal~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-g~---~~~~~~~~-----~ 373 (429)
T 1s0a_A 310 FM----GNPLACAAANASLAILESGD---WQQQVADIEVQLREQLAPARDAEMVADVRVL-GA---IGVVETTH-----P 373 (429)
T ss_dssp TT----TCHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHGGGGGCTTEEEEEEE-TT---EEEEEESS-----C
T ss_pred CC----CCHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHhcCCCEEEEEEe-eE---EEEEEECC-----c
Confidence 11 12233344445555544433 3355667788999998762 1 221 1111 11 23445531 2
Q ss_pred CCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 918 IEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 918 ~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
.+..++.+.|.++||.+... .+.+|++++..+|++|++ +++++|++++++
T Consensus 374 ~~~~~l~~~l~~~Gi~v~~~----~~~iRis~~~~~t~e~i~---~~~~~l~~~~~~ 423 (429)
T 1s0a_A 374 VNMAALQKFFVEQGVWIRPF----GKLIYLMPPYIILPQQLQ---RLTAAVNRAVQD 423 (429)
T ss_dssp BCHHHHHHHHHHTTEECCCB----TTEEEECCCTTCCHHHHH---HHHHHHHHHTSS
T ss_pred ccHHHHHHHHHHCCCEEecc----CCEEEEECCCCCCHHHHH---HHHHHHHHHHHh
Confidence 46788999999999998532 478999999999999999 999999987654
No 212
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.75 E-value=6.9e-17 Score=184.95 Aligned_cols=282 Identities=15% Similarity=0.145 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHH----HHhcCcEEEEEe
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVG 708 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~----~~~~G~~v~~v~ 708 (985)
...++++.+++++|.+. .+.+++|++++..+ ++.+. .++++|+++...|+..... ++..|++++.++
T Consensus 53 ~~~~l~~~la~~~~~~~-~i~~~sGt~a~~~~---~~~~~-----~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 123 (386)
T 1cs1_A 53 TRDVVQRALAELEGGAG-AVLTNTGMSAIHLV---TTVFL-----KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVD 123 (386)
T ss_dssp HHHHHHHHHHHHHTCSE-EEEESSHHHHHHHH---HHHHC-----CTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEEC
T ss_pred cHHHHHHHHHHHhCCCc-EEEeCCHHHHHHHH---HHHHh-----CCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeC
Confidence 35688999999999884 45567777655443 33321 3678899988877643322 356799999998
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCCCcEE
Q 001990 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 709 ~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g~Di~ 787 (985)
.+ |+++|+++++ +++++|++++| |++|.+. |+++|+++|+++|+++++|++|..+.. ..+..++.|++
T Consensus 124 ~~-----d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~l~~~~~~~li~De~~~~~~~--~~~~~~~~di~ 192 (386)
T 1cs1_A 124 QG-----DEQALRAALA---EKPKLVLVESPSNPLLRVV-DIAKICHLAREVGAVSVVDNTFLSPAL--QNPLALGADLV 192 (386)
T ss_dssp TT-----CHHHHHHHHH---TCCSEEEEECSCTTTCCCC-CHHHHHHHHHHTTCEEEEECTTTCTTT--CCGGGGTCSEE
T ss_pred CC-----CHHHHHHhhc---cCCcEEEEeCCCCCCCccc-CHHHHHHHHHHcCCEEEEECCCccccc--CCccccCceEE
Confidence 74 8999999998 78999999998 5789998 899999999999999999999854322 23445789999
Q ss_pred EeCCcccccccCCCCCCc-ceeeeecc-cccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhch
Q 001990 788 HLNLHKTFCIPHGGGGPG-MGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 788 ~~s~hKtl~~p~g~GGPg-~G~l~~~~-~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~ 865 (985)
+.|+||+|+.| |+. +|++++++ ++.+.+.....++ +. .. +... +++.+..+
T Consensus 193 ~~s~sK~~~~~----~~~~~G~~~~~~~~l~~~l~~~~~~~-------------~~-~~----~~~~---~~~~~~~l-- 245 (386)
T 1cs1_A 193 LHSCTKYLNGH----SDVVAGVVIAKDPDVVTELAWWANNI-------------GV-TG----GAFD---SYLLLRGL-- 245 (386)
T ss_dssp EEETTTTTTCS----SCCCCEEEEESSHHHHHHHHHHHHHH-------------TC-BC----CHHH---HHHHHHHH--
T ss_pred EEcCcccccCC----CCceeEEEEeCcHHHHHHHHHHHHhc-------------CC-CC----CHHH---HHHHHhcc--
Confidence 99999998532 222 38999886 6654432111000 00 01 1111 11212222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCe---eEcCCC------------CceeEEEEEEecCccccCCCCHHHHHHHHHHC
Q 001990 866 KGLTEASKIAILNANYMAKRLEKHYPI---LFRGVN------------GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY 930 (985)
Q Consensus 866 ~gl~~~~~~~~~~a~~l~~~L~~~~~i---~~~g~~------------~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~ 930 (985)
+.+.+..++..++++++.+.|++...+ .+++-. ....+.+.+.+. + ...++.+.|.++
T Consensus 246 ~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~l~~~ 318 (386)
T 1cs1_A 246 RTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELD------G-DEQTLRRFLGGL 318 (386)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEES------S-CHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEEC------C-CHHHHHHHHHhC
Confidence 223444455667777888877652111 111100 001223445553 2 267788889899
Q ss_pred CCccCCC--C----------------CC--------C-CCEEEEeccCCCCHHhhchHHHHHHHHHHH
Q 001990 931 GFHGPTM--S----------------WP--------V-PGTLMIEPTESESKVCHNREDLFFQILLSL 971 (985)
Q Consensus 931 Gi~~~~~--~----------------~p--------v-~~~lris~t~~~t~eeId~~~~~i~aL~~i 971 (985)
||.+... . .| + ++.+|++++..+++++|+ ++.++|+++
T Consensus 319 gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~---~l~~al~~~ 383 (386)
T 1cs1_A 319 SLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIA---DLENGFRAA 383 (386)
T ss_dssp SSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHH---HHHHHHHHH
T ss_pred CcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHH---HHHHHHHHh
Confidence 9986421 1 01 1 478999999999999999 888887765
No 213
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.75 E-value=1e-16 Score=183.76 Aligned_cols=307 Identities=15% Similarity=0.133 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCCC
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~~ 712 (985)
...++++.+++++|.+. .+++++|++++..++.+++ +...++..++++||++...|..+...+...|++++.++++++
T Consensus 35 ~~~~l~~~la~~~~~~~-~i~~~sGt~a~~~al~~~~-~~~~~~~~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 112 (390)
T 3b8x_A 35 YVKQYETQFAKTFGSKY-AVMVSSGSTANLLMIAALF-FTKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDIN 112 (390)
T ss_dssp HHHHHHHHHHHHHTCSE-EEEESCHHHHHHHHHHHTT-SSSSCSCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHHCCCc-EEEECCHHHHHHHHHHHHH-hhhhcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCcc
Confidence 36688999999999874 4677788876654444331 000002246789999998787777777889999999999876
Q ss_pred -CCCCHHHHHHHHHhcCCCeEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCCC--cEEEe
Q 001990 713 -GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGA--DVCHL 789 (985)
Q Consensus 713 -g~iDle~L~~~i~~~~~~t~~Vvi~~pn~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g~--Di~~~ 789 (985)
+.+|+++|+++++ +++++|++++ .+|... |+++|+++|+++|+++|+|++|..+... ....+|. |+.++
T Consensus 113 ~~~~d~~~l~~~i~---~~~~~v~~~~--~~g~~~-~~~~i~~l~~~~~~~li~D~a~~~g~~~--~~~~~g~~~~~~~~ 184 (390)
T 3b8x_A 113 TLNIDIESLKEAVT---DSTKAILTVN--LLGNPN-NFDEINKIIGGRDIILLEDNCESMGATF--NNKCAGTFGLMGTF 184 (390)
T ss_dssp TCSBCHHHHHHHCC---TTEEEEEEEC--GGGCCC-CHHHHHHHHTTSCCEEEEECTTCTTCEE--TTEETTSSSSEEEE
T ss_pred ccCcCHHHHHHHhC---cCCeEEEEEC--CccChh-hHHHHHHHHHHcCCEEEEECcCcccCEE--CCcccccccceEEE
Confidence 8999999999997 7899999874 568877 8999999999999999999999644322 2223444 66654
Q ss_pred CCcccccccCCCCCCcceeeeecc-cccCcCCC-CccccCCC--------------CC--CCCCCCCCCCcccccchhhh
Q 001990 790 NLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPS-HPVVSTGG--------------IP--APEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 790 s~hKtl~~p~g~GGPg~G~l~~~~-~l~~~lpg-~~~g~~~~--------------~~--~~~~~~~t~~i~s~~~g~~~ 851 (985)
+. ..++.++ +|.| |++++++ .+.+.+.. ...|+..+ .. .+.......+... ...
T Consensus 185 s~--~~~k~~~-~g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~ 256 (390)
T 3b8x_A 185 SS--FYSNHIA-TMEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRP----LEM 256 (390)
T ss_dssp EC--CTTSSSC-SSSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCC----CHH
T ss_pred Ec--cCCCCCc-cCCc-eEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCc----CHH
Confidence 42 2222211 2334 8888875 44322110 00110000 00 0000000001001 111
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCC-CceeEEEEEEecCccccCCCCHHHHHHHHHHC
Q 001990 852 ILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVN-GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDY 930 (985)
Q Consensus 852 ~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~-~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~ 930 (985)
.++.+...+ +.+.+..++..++++++.+.|++...+...++. ....+.+.+.++. ..+.+..++.+.|.++
T Consensus 257 ~aa~~l~~l-----~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~l~~~L~~~ 328 (390)
T 3b8x_A 257 SGAIGIEQL-----KKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKK---DSGVIRKQLVENLNSA 328 (390)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECT---TSCCCHHHHHHHHHHT
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecC---cCcccHHHHHHHHHHC
Confidence 122222222 345566677788899999999863233333221 1122234444431 1145788999999999
Q ss_pred CCccCCC------CC-CC-------------------CCEEEEeccCCCCHHhhchHHHHHHHH
Q 001990 931 GFHGPTM------SW-PV-------------------PGTLMIEPTESESKVCHNREDLFFQIL 968 (985)
Q Consensus 931 Gi~~~~~------~~-pv-------------------~~~lris~t~~~t~eeId~~~~~i~aL 968 (985)
||.+... .. |. .+.||++++..+|++||| +++++|
T Consensus 329 gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~---~i~~~l 389 (390)
T 3b8x_A 329 GIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEID---YLREVL 389 (390)
T ss_dssp TBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHH---HHHHHT
T ss_pred CCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHH---HHHHhh
Confidence 9987531 12 20 036999999999999999 998876
No 214
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.75 E-value=6.9e-18 Score=195.05 Aligned_cols=309 Identities=17% Similarity=0.199 Sum_probs=199.8
Q ss_pred HHHHHHHHHhC-CCCHHHhhhhcCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCCccceecCCCCCCCCCcHHHHH
Q 001990 108 EDQAKMSELVG-LDNLDSLIDATVPKSIRIDSMKFSKFDEGLTESQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILR 186 (985)
Q Consensus 108 ~~~~~ml~~~g-~~~~~~l~~~~ip~~~~~~~~~lp~~~~~~se~e~~~~~~~~~~~n~~~~~~lG~g~~~~~~p~~v~~ 186 (985)
+|+++||+.+| .+++++|+++ |+++++ ...+++..++..|.. .++ +
T Consensus 4 ~~~~~m~~~~~~~~~~~~~~~~-~~~~~~----------------~~~~~~~~~a~~n~~---------------~Vl-~ 50 (427)
T 3i16_A 4 ESTKQFLKKYNINDRVLKLYET-AMNDIQ----------------NQFKILDDIREFNQL---------------KVL-N 50 (427)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHH-HHHHTH----------------HHHHHHHHHHHHHHH---------------HHH-H
T ss_pred hHHHHHHHHcCCcHHHHHHHHH-HHHHHH----------------HHHHHHHHHHHhCHH---------------HHH-H
Confidence 78999999999 7899999986 776551 133455555555531 111 1
Q ss_pred HHHhCC---ccccccCCCh-hhHhhHHHHHHHHHHHHHHHhhCCCCcceee---ccchHHHHHHHHHHhhhhcCCCCEEE
Q 001990 187 NIMENP---AWYTQYTPYQ-AEIAQGRLESLLNFQTMIADLTGLPMSNASL---LDEGTAAAEAMAMCNNIQKGKKKTFI 259 (985)
Q Consensus 187 ~i~~~~---~~~t~~~py~-~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl---~~~~ta~~ea~~~a~~~~~~~g~~Vl 259 (985)
++.... ..+...+.|. ++. | ..++++.+|+++|++.+ .+ +.+||+++.++++++. . +||+||
T Consensus 51 A~~~~~~~~~~~~~~~gy~y~~~--~----~~~Le~~lA~l~g~e~a--lv~p~~~sGt~Ai~~al~all-~--pGD~Vl 119 (427)
T 3i16_A 51 AFQEERISEAHFTNSSGYGYGDI--G----RDSLDAVYARVFNTESA--LVRPHFVNGTHALGAALFGNL-R--PGNTML 119 (427)
T ss_dssp HHHHTTCCGGGSCCCCTTCTTCH--H----HHHHHHHHHHHHTCSEE--EEETTCCSHHHHHHHHHHHHC-C--TTCEEE
T ss_pred HHHHhchhHHhcCCCCCCCCCHH--H----HHHHHHHHHHHhCCcce--EEeCCCccHHHHHHHHHHHHh-C--CCCEEE
Confidence 111100 0011111111 111 1 45577899999999874 44 7889988877776652 3 899999
Q ss_pred EcC-CCChhHHHHH-------HHhhcCCCeEEEEeCc--------hhhhc-cC--CCEeEEEEEc----C-CCCeeeccH
Q 001990 260 IAS-NCHPQTIDIC-------ITRADGFDIKVVVSDL--------KDIDY-KS--GDVCGVLVQY----P-GTEGEVLDY 315 (985)
Q Consensus 260 v~~-~~h~s~~~~~-------~~~a~~~gi~v~~~~~--------~~l~~-l~--~~t~~V~v~~----p-n~~G~i~dl 315 (985)
+++ ..|+.+...+ ...++..|++++.+|. +++++ ++ ++|++|++++ | |++|.+.|+
T Consensus 120 ~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~dl 199 (427)
T 3i16_A 120 SVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDI 199 (427)
T ss_dssp ESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHHH
T ss_pred EeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHHH
Confidence 999 8999888766 1224557999998875 35555 65 7899999998 7 689999999
Q ss_pred HHHHHHHHh--CCcEEEEEeccccccC-CCCCCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeee
Q 001990 316 GDFIKNAHA--NGVKVVMATDLLALTI-LKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVS 391 (985)
Q Consensus 316 ~~I~~~a~~--~galliV~a~~~alg~-l~~p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s 391 (985)
++|+++||+ +|++++|| +.++.+. ...|.++|+|++++|. |.++++ |.|..|++++++++++++..++.-
T Consensus 200 ~~i~~la~~~~~g~~livD-~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~---g~~~gG~i~~~~~li~~l~~~~~~-- 273 (427)
T 3i16_A 200 KSIVDCVKNIRKDIICFVD-NCYGEFMDTKEPTDVGADLIAGSLIKNIGGG---IAPTGGYLAGTKDCIEKTSYRLTV-- 273 (427)
T ss_dssp HHHHHHHHHHCTTSEEEEE-CTTTTTSSSSCGGGGTCSEEEEETTSGGGTT---TCCSCEEEEECHHHHHHHHHHHSC--
T ss_pred HHHHHHHHHhCCCCEEEEE-CCCccccccCCccccCCeEEEecCcccCCCC---CCceEEEEEECHHHHHHHHHhccc--
Confidence 999999999 99999995 4555555 4567789999999998 877632 226669999999888776321100
Q ss_pred ecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcC
Q 001990 392 IDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG 471 (985)
Q Consensus 392 ~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~ 471 (985)
+ .+ |. .++++ + . +.++.+.|.+-+..+.++..+++.++++.|+++| +++.+
T Consensus 274 ------~-----------~~----g~--~~~~~-~-~---~a~~~l~gl~~~~~r~~~~~~~a~~la~~L~~~g-~~V~p 324 (427)
T 3i16_A 274 ------P-----------GI----GG--ECGST-F-G---VVRSMYQGLFLAPHISMEALKGAILCSRIMELAG-FEVMP 324 (427)
T ss_dssp ------T-----------TT----GG--GCCCC-T-T---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CEEES
T ss_pred ------C-----------cc----Cc--cCCcc-H-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeecC
Confidence 0 00 00 00000 0 0 0111222223345677888999999999999998 78753
Q ss_pred CC---Ccc-eEEEecCC---HHHHHHHHHHc
Q 001990 472 LP---FFD-TVKVKCAD---AHAIASAAYKI 495 (985)
Q Consensus 472 ~~---~~~-~~~i~~~~---~~~l~~~L~~~ 495 (985)
.+ ..+ .++|.+.+ +.++.+.|...
T Consensus 325 ~~~~~~~~~i~~i~l~~~~~~~~f~~~l~~~ 355 (427)
T 3i16_A 325 KYDEKRSDIIQSIKFNDKDKLIEFCKGIQTG 355 (427)
T ss_dssp CTTSCCSSSCEEEECSSHHHHHHHHHHHHHT
T ss_pred CCCCCCccEEEEEEECCHHHHHHHHHHHhhc
Confidence 21 111 34454443 55677777665
No 215
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.75 E-value=8.4e-17 Score=187.54 Aligned_cols=316 Identities=12% Similarity=0.071 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCC
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHK-ARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDA 711 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~-~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~ 711 (985)
...++++.+++++|.+. .+++++|++++..++.++..+.. .....++++||++...|..+...+...|++++.+++++
T Consensus 63 ~~~~l~~~la~~~g~~~-~i~~~sGt~a~~~al~~l~~~~~~~~~~~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~ 141 (437)
T 3bb8_A 63 FNDAFEKKLGEYLGVPY-VLTTTSGSSANLLALTALTSPKLGVRALKPGDEVITVAAGFPTTVNPTIQNGLIPVFVDVDI 141 (437)
T ss_dssp HHHHHHHHHHHHHTCSE-EEEESCHHHHHHHHHHHTTCGGGGGGSCCTTCEEEECSSSCHHHHHHHHHTTCEEEECCEET
T ss_pred HHHHHHHHHHHHHCCCc-EEEeCCHHHHHHHHHHHhhhcccccccCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEeccC
Confidence 36689999999999884 46677887766544443310000 00024678999999888777777788999999999875
Q ss_pred -CCCCCHHHHHHHHHhcCCCeEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCC--CcEEE
Q 001990 712 -KGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIG--ADVCH 788 (985)
Q Consensus 712 -~g~iDle~L~~~i~~~~~~t~~Vvi~~pn~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g--~Di~~ 788 (985)
++.+|+++|+++++ +++++|++++ ..|... |+++|+++|+++|+++|+|++|..+... ....++ .|+++
T Consensus 142 ~~~~~d~~~l~~~i~---~~~~~v~~~~--~~g~~~-~~~~i~~l~~~~~~~li~D~a~~~g~~~--~~~~~~~~~d~~~ 213 (437)
T 3bb8_A 142 PTYNVNASLIEAAVS---DKTKAIMIAH--TLGNLF-DLAEVRRVADKYNLWLIEDCCDALGSTY--DGKMAGTFGDIGT 213 (437)
T ss_dssp TTTEECGGGHHHHCC---TTEEEEEEEC--GGGCCC-CHHHHHHHHHHHTCEEEEECTTCTTCEE--TTEETTSSSSEEE
T ss_pred ccCCcCHHHHHHhcC---CCCeEEEEeC--CCCChh-cHHHHHHHHHHcCCEEEEECccccCceE--CCeecccccCEEE
Confidence 68899999999997 7899999975 457776 8999999999999999999999644322 222344 79988
Q ss_pred eCCcccccccCCCCCCcceeeeecccc-cCc---CCCCccc---cCCC-------------CCCCCC-CCCCCCcccccc
Q 001990 789 LNLHKTFCIPHGGGGPGMGPIGVKKHL-APF---LPSHPVV---STGG-------------IPAPEK-SQPLGTIAAAPW 847 (985)
Q Consensus 789 ~s~hKtl~~p~g~GGPg~G~l~~~~~l-~~~---lpg~~~g---~~~~-------------~~~~~~-~~~t~~i~s~~~ 847 (985)
++++|+++. +|+.+|+++++++. .+. +.+...+ ..+. ....++ +.++....+..+
T Consensus 214 ~s~~~~k~l----~~g~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 289 (437)
T 3bb8_A 214 VSFYPAKHI----TMGEGGAVFTQSAELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNL 289 (437)
T ss_dssp EECSTTSSS----CCSSCEEEEESCHHHHHHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBC
T ss_pred EECcCCcCC----CCCCeEEEEeCCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccCccc
Confidence 887666643 34567888887543 221 1111000 0000 000000 111111100000
Q ss_pred h-hhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhccCCe-eEcCCC-C--ceeEEEEEEecCccccCCCCHHH
Q 001990 848 G-SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPI-LFRGVN-G--TVAHEFIVDLRGLKNTAGIEPED 922 (985)
Q Consensus 848 g-~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i-~~~g~~-~--~~~~~~vv~~~~~~~~~g~~~~~ 922 (985)
+ ....++.+.+.+.. +.+..++..++++++.++|++...+ .++... . +....+++.+.. ..+.+..+
T Consensus 290 ~~~~~~aa~~l~~l~~-----~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 361 (437)
T 3bb8_A 290 KITDMQAACGLAQLER-----IEEFVEKRKANFKYLKDALQSCADFIELPEATENSDPSWFGFPITLKE---DSGVSRID 361 (437)
T ss_dssp CCBHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHGGGGTTTEECCCCCTTEECCCSSEEEEECG---GGSSCHHH
T ss_pred CCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhccCCccccCCCCCCCceeeEEEEEEECC---cCcCcHHH
Confidence 0 11222222233322 2334445577788999999873222 222110 1 011123444331 01457889
Q ss_pred HHHHHHHCCCccCCCCC------CC-------------------CCEEEEeccCCCCHHhhchHHHHHHHHHHHH
Q 001990 923 VAKRLMDYGFHGPTMSW------PV-------------------PGTLMIEPTESESKVCHNREDLFFQILLSLT 972 (985)
Q Consensus 923 l~~~L~e~Gi~~~~~~~------pv-------------------~~~lris~t~~~t~eeId~~~~~i~aL~~i~ 972 (985)
+.+.|.++||.+...+. |. .+.||++++..+|++||| +++++|++++
T Consensus 362 l~~~L~~~GI~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~---~i~~~l~~~~ 433 (437)
T 3bb8_A 362 LVKFLDEAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHDHLD---YVVSKFEEFF 433 (437)
T ss_dssp HHHHHHHTTBCCBCCTTSSGGGSGGGSSCCCEECSCCHHHHHHHHHEEEECCSTTCCHHHHH---HHHHHHHHHT
T ss_pred HHHHHHHCCCceeccCCcccccCchhhccCccccCCCcHHHHHhcCEEEecCCCCCCHHHHH---HHHHHHHHHH
Confidence 99999999998754321 10 124999999999999999 9999998764
No 216
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.75 E-value=2.9e-17 Score=187.69 Aligned_cols=302 Identities=11% Similarity=0.013 Sum_probs=183.9
Q ss_pred HHHHHHHHH-HHHhC-CCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCC
Q 001990 633 MFNNLGEWL-CTITG-FDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTD 710 (985)
Q Consensus 633 ~~~el~~~l-a~l~G-~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~ 710 (985)
...++++.+ ++++| .+. .+++++|+.++..++.++ +..++|+||++...|..+...+...|++++.++++
T Consensus 37 ~~~~l~~~~~a~~~g~~~~-~v~~~sgt~al~~al~~l-------~~~~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~ 108 (377)
T 3ju7_A 37 INQRFEQTIMSGFFQNRGA-VTTVANATLGLMAAIQLK-------KRKKGKYALMPSFTFPATPLAAIWCGLEPYFIDIS 108 (377)
T ss_dssp HHHHHHHHHHHHTSTTCSE-EEEESCHHHHHHHHHHHH-------SCTTCCEEEEESSSCTHHHHHHHHTTCEEEEECBC
T ss_pred HHHHHHHHHHHHHhCCCCe-EEEeCCHHHHHHHHHHHc-------CCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 366889999 99999 443 466778887664444332 12478999999998887777788899999999997
Q ss_pred -CCCCCCHHHHHHHHHhcCCC--eEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCCC-CCCcCCCcE
Q 001990 711 -AKGNINIEELRKAAEANRDN--LSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLT-SPGYIGADV 786 (985)
Q Consensus 711 -~~g~iDle~L~~~i~~~~~~--t~~Vvi~~pn~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~-~~g~~g~Di 786 (985)
+++.+|++++++++.. ++ |++|+.++ ++|... |+++|+++|+ +|+++|+|++|+.+..... ..+....|+
T Consensus 109 ~~~~~~d~~~l~~~i~~--~~~~tk~v~~~~--~~G~~~-~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~ 182 (377)
T 3ju7_A 109 IDDWYMDKTVLWDKIEE--LKEEVAIVVPYA--TFGSWM-NLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGM 182 (377)
T ss_dssp TTTCSBCHHHHHHHHHH--HGGGEEEECCBC--GGGBCC-CCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSE
T ss_pred CccCCcCHHHHHHHHhc--CCCCceEEEEEC--CCCCcc-CHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcE
Confidence 4689999999999831 45 89887544 579987 8999999999 9999999999964422111 111112566
Q ss_pred EEeC--CcccccccCCCCCCcceeeeec-ccccCcCCC-CccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHH
Q 001990 787 CHLN--LHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPS-HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 787 ~~~s--~hKtl~~p~g~GGPg~G~l~~~-~~l~~~lpg-~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~ 862 (985)
.++| .||+|+ ++.+|+++++ +++.+.+.. +..|..... .. .+.+. +... ... . ++..+..
T Consensus 183 ~~~S~~~~K~l~------~g~gG~~~~~~~~l~~~~~~~~~~g~~~~~-~~-~~~g~-~~~~----~~~--~-aa~~~~~ 246 (377)
T 3ju7_A 183 IIYSFHATKPFG------IGEGGLIYSKNEEDIQRIKRMGNFGFDTNR-EC-TMMGF-NCKM----SEY--A-AAIGIAT 246 (377)
T ss_dssp EEEECBTTSSSC------CBSCEEEEESCHHHHHHHHHHTBTTBCTTS-CB-CSSCC-BCCC----CHH--H-HHHHHHH
T ss_pred EEEECCCCCcCC------CCCcEEEEECCHHHHHHHHHHHhcCCCCCC-ce-eeccc-cCCC----CHH--H-HHHHHHH
Confidence 6555 578884 2245666665 344332210 001110000 00 00111 1110 111 1 1111121
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHhcc--CCeeEcC-CCCceeE-EEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC
Q 001990 863 MGSKGLTEASKIAILNANYMAKRLEKH--YPILFRG-VNGTVAH-EFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS 938 (985)
Q Consensus 863 lg~~gl~~~~~~~~~~a~~l~~~L~~~--~~i~~~g-~~~~~~~-~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~ 938 (985)
.+.+.+..++..++++++.+.|++. +.+.+.. ......+ .+.+.++ .+.+.+++.+.|.++||.+...+
T Consensus 247 --l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~L~~~gI~~~~~~ 319 (377)
T 3ju7_A 247 --MKKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCP-----EEVRNKQVIEDLKKQKIEARLYF 319 (377)
T ss_dssp --HHTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECC-----TTSCHHHHHHHHHTTTBCCBCTT
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeC-----ChhhHHHHHHHHHHCCCceeccc
Confidence 2445666677778888899888762 1111111 1111111 1234433 12358899999999999864321
Q ss_pred C-C----------------C-----CCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 939 W-P----------------V-----PGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 939 ~-p----------------v-----~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
. | + ...|++.+....|++|++ +++++|++++..
T Consensus 320 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~---~v~~~l~~~~~~ 374 (377)
T 3ju7_A 320 SPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVE---QIVICLGQKVVS 374 (377)
T ss_dssp SSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHH---HHHHHHTC----
T ss_pred CCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHH---HHHHHHHHHHhc
Confidence 0 1 0 246999999999999999 999999877653
No 217
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.75 E-value=1.3e-16 Score=183.03 Aligned_cols=273 Identities=15% Similarity=0.138 Sum_probs=189.7
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---h
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---K 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~---~ 289 (985)
..++++.+|+++|.+ .+.++.+|++++++++.++ . ++||+|++++..|+++...++.+++..|++++.++. +
T Consensus 61 ~~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~~~-~--~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~ 135 (389)
T 3acz_A 61 VEQFEEMVCSIEGAA--GSAAFGSGMGAISSSTLAF-L--QKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVE 135 (389)
T ss_dssp HHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHTTT-C--CTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTCHH
T ss_pred HHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHH-h--CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCHH
Confidence 456778999999987 4667888887777666544 2 278999999999999988887666678999999875 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001990 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~p~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ +++++++|++++| |++|.+.|+++|+++||++|+++++| +.++.+....|.++|+|++++|. |.+++| |
T Consensus 136 ~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD-~~~~~~~~~~~~~~~~di~~~S~sK~~~~~---~ 211 (389)
T 3acz_A 136 KVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVD-ATFTSPCFLKPLELGADIALHSVSKYINGH---G 211 (389)
T ss_dssp HHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEE-CTTTCTTTCCGGGTTCSEEEEETTTTTTCS---S
T ss_pred HHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEE-CCCccccccCccccCCeEEEECChhhccCC---C
Confidence 5655 7889999999998 67999999999999999999999995 34454444456678999999998 877644 2
Q ss_pred CCceEEEEEch-hhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHH
Q 001990 367 GPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 367 GP~~G~l~~~~-~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~ 445 (985)
++-.|++++++ ++++++.... +..+. .. .++.+ .++ ..+.+.++.
T Consensus 212 ~~~~G~v~~~~~~~~~~l~~~~-------------------------~~~g~-~~---~~~~~-~~~----~~~l~~l~~ 257 (389)
T 3acz_A 212 DVIGGVSSAKTAEDIATIKFYR-------------------------KDAGS-LM---APMDA-FLC----ARGMKTLPI 257 (389)
T ss_dssp CCCCEEEEESSHHHHHHHHHHH-------------------------HHHCC-CC---CHHHH-HHH----HHHHTTHHH
T ss_pred CceeEEEEECcHHHHHHHHHHH-------------------------HhcCC-CC---CHHHH-HHH----HcCccHHHH
Confidence 22248999988 7766541100 00010 00 11111 111 111234555
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEc--CC----C-----------CcceEEEecCCHHHHHHHHHHcCceeee-------
Q 001990 446 IAQRVHGLAGTFALGLKKLGTVEVQ--GL----P-----------FFDTVKVKCADAHAIASAAYKIEMNLRV------- 501 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~~~--~~----~-----------~~~~~~i~~~~~~~l~~~L~~~Gi~~~~------- 501 (985)
..++..+++..+++.|++.+.++-+ .. + ....+.|.+++..++.+.|.+.||.+..
T Consensus 258 r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~l~~~~i~~~~~s~G~~~ 337 (389)
T 3acz_A 258 RMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKSFEAAKKLMEHLKVCTLAVSLGCVD 337 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSHHHHHHHHTTCSSSEEBSCCCCSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECCHHHHHHHHHhCCCcEECcCCCCcc
Confidence 6677778888898888876433321 11 1 1234667665555666777777875432
Q ss_pred -----------------------ecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001990 502 -----------------------VDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 502 -----------------------~~~~~lris~~~~~t~edid~ll~~l~ 528 (985)
+.++.+|+|++..++++.++.|.++|.
T Consensus 338 sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~~~~li~~l~~al~ 387 (389)
T 3acz_A 338 TLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQALE 387 (389)
T ss_dssp CEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHT
T ss_pred cEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHh
Confidence 114789999999999999999999886
No 218
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.75 E-value=3.5e-17 Score=189.29 Aligned_cols=301 Identities=12% Similarity=0.085 Sum_probs=183.6
Q ss_pred hcHHHHHHHHHHHHHHHhCCCc--cceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEE
Q 001990 628 QGYQEMFNNLGEWLCTITGFDS--FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~~~--~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~ 705 (985)
.|..++.+.+.+++....+.+. ..+++++|++++..++.++. .++++|+++.+.|..+...++..|.+++
T Consensus 80 ~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~--------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~ 151 (418)
T 3rq1_A 80 AGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYT--------EPGDEVLTADWYWGAYRVICSDTGRTLV 151 (418)
T ss_dssp TCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHS--------CTTCEEEEESSCCTHHHHHHHHTTCEEE
T ss_pred CChHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHhc--------CCCCEEEECCCCchhHHHHHHHcCCEEE
Confidence 4555555555555554445441 23556666666544433321 4678999999888777777889999999
Q ss_pred EEeCC-CCCCCCHHHHHHHHHhc-CCCeE-EEEEEcC--CCcccccc--CHHHHHHHHH------HcCCEEEEEcccccc
Q 001990 706 SVGTD-AKGNINIEELRKAAEAN-RDNLS-TLMVTYP--STHGVYEE--GIDEICKIIH------DNGGQVYMDGANMNA 772 (985)
Q Consensus 706 ~v~~~-~~g~iDle~L~~~i~~~-~~~t~-~Vvi~~p--n~~G~i~~--di~eI~~la~------~~g~lliVD~a~~~~ 772 (985)
.+|.+ +++.+|+++|+++++++ .++++ +|++++| |++|.+.+ .+++|+++|+ ++|+++++|+++. .
T Consensus 152 ~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~-~ 230 (418)
T 3rq1_A 152 TYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYL-D 230 (418)
T ss_dssp EECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTG-G
T ss_pred EEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccc-c
Confidence 99984 45689999999999731 01454 7888888 57999871 2556666666 8999999999973 1
Q ss_pred ccC-------C-CCCCcCCCc---EEEeCCcccccccCCCCCCcceeeee---cccccCcCCCCccccCCCCCCCCCCCC
Q 001990 773 QVG-------L-TSPGYIGAD---VCHLNLHKTFCIPHGGGGPGMGPIGV---KKHLAPFLPSHPVVSTGGIPAPEKSQP 838 (985)
Q Consensus 773 ~~g-------~-~~~g~~g~D---i~~~s~hKtl~~p~g~GGPg~G~l~~---~~~l~~~lpg~~~g~~~~~~~~~~~~~ 838 (985)
+.. + ........| +++.|++|+|+. .|.++|++++ ++++.+.+....-... + ..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-------~-~~ 298 (418)
T 3rq1_A 231 YSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTM----YGQRVGAMIGISDDEEIADEFFEVNKSTS-------R-AT 298 (418)
T ss_dssp GSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTC----CSSCCEEEEEEESSHHHHHHHHHHHHHHH-------H-HH
T ss_pred ccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcC----cCCcceEEEEEeCCHHHHHHHHHHHHHHH-------h-hc
Confidence 111 0 001112234 677899999854 4678999988 7766654421000000 0 00
Q ss_pred CCCcccccchhhhHHHHHHHHHHHhc-----hhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCc
Q 001990 839 LGTIAAAPWGSALILPISYTYIAMMG-----SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGL 912 (985)
Q Consensus 839 t~~i~s~~~g~~~~~~~A~a~l~~lg-----~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~ 912 (985)
+++.+ .....++...+.... .+.+.+..++..++.+++.+.|++ ++.+. .+.+.++ +.+++
T Consensus 299 ~~~~~------~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~--~~~~~--- 365 (418)
T 3rq1_A 299 WSNIC------RPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPML--PYRGGFF--ITIPT--- 365 (418)
T ss_dssp TSSCC------HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC--CCCSSSE--EEEEC---
T ss_pred cCCCc------hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--CCCceEE--EEcCC---
Confidence 01111 111111222221100 011223445566777888888877 55542 2222222 22333
Q ss_pred cccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 913 KNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 913 ~~~~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
.+..++.+.|.++||.+... ++.+||+++ ..++++++ ++++.|+++++++
T Consensus 366 -----~~~~~~~~~l~~~gi~v~~g----~~~iRis~~-~~~~~~i~---~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 366 -----DSANAICEELKKEHIYVIAL----ANGIRIAAC-GIPKCQMT---GLAEKIYNAMKSL 415 (418)
T ss_dssp -----TTHHHHHHHHHHTTEECEEC----SSEEEEEGG-GSCHHHHT---THHHHHHHHHHHT
T ss_pred -----CCHHHHHHHHHhCCEEEecC----CCCeEEEEe-cCCHHHHH---HHHHHHHHHHHHH
Confidence 25788999999999987432 478999976 56999999 9999999988764
No 219
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.75 E-value=3.7e-17 Score=189.61 Aligned_cols=293 Identities=11% Similarity=0.138 Sum_probs=186.1
Q ss_pred HHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCCCcHHHHH-----hcCcEEEEEe
Q 001990 635 NNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAA-----MCGMKIVSVG 708 (985)
Q Consensus 635 ~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv-~~~~Hg~~~~~~~-----~~G~~v~~v~ 708 (985)
.++.+.|++++......++.|||++++++++.++|.|. +|++||. ...+||....... ........+|
T Consensus 130 ~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~t------gr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p 203 (454)
T 4ao9_A 130 GRLARLICERFPQIEQLRFTNSGTEANLMALTAALHFT------GRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLP 203 (454)
T ss_dssp HHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH------TCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEEC
T ss_pred HHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcc------cCCeEEEEeCCcCCccccccccccCccCCCCcccCC
Confidence 36778889887533335778999999999999888773 4566765 6678885432211 1223556666
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEccccccccCCCC-CCcC-
Q 001990 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQVGLTS-PGYI- 782 (985)
Q Consensus 709 ~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~d---i~eI~~la~~~g~lliVD~a~~~~~~g~~~-~g~~- 782 (985)
.+ |++++++.++++++++++|+++-. +..|++.++ +++|.++|++||++||+|+++. +-.+..- ...+
T Consensus 204 ~n-----d~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t-GR~G~~~a~e~~g 277 (454)
T 4ao9_A 204 YN-----DAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT-SRLAPHGLANKLG 277 (454)
T ss_dssp TT-----CHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG-GGGSTTCHHHHHT
T ss_pred Cc-----hHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc-CCCccccchhccC
Confidence 64 899999999988788998888642 457877632 9999999999999999999984 3222100 0111
Q ss_pred -CCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHH
Q 001990 783 -GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 783 -g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~ 861 (985)
-+|++++ .|.++ +|. .+|.+.+++++++.+.... +. ....+++.|+++.++++.+.|.
T Consensus 278 v~PDi~t~--gK~lg----gG~-Piga~~~~~ei~~~~~~~~-~~-------------~~h~~T~~gnPla~AAala~L~ 336 (454)
T 4ao9_A 278 IRSDLTTL--GKYIG----GGM-SFGAFGGRADVMALFDPRT-GP-------------LAHSGTFNNNVMTMAAGYAGLT 336 (454)
T ss_dssp CCCSEEEE--EGGGG----TTS-SCEEEEECHHHHGGGCTTT-CS-------------CCCCCTTTTCHHHHHHHHHHHH
T ss_pred CCCcEEEe--ccccC----CCC-cceeeeeHHHHHHHHhhcc-CC-------------ccccCCCCCCHHHHHHHHHHHH
Confidence 2699876 37773 344 4677888888776553210 00 0011234457777888888898
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHhcc---CCe--eEcCCCCceeEEEEEEecC-----ccccCCCC---HHHHHHHHH
Q 001990 862 MMGSKGLTEASKIAILNANYMAKRLEKH---YPI--LFRGVNGTVAHEFIVDLRG-----LKNTAGIE---PEDVAKRLM 928 (985)
Q Consensus 862 ~lg~~gl~~~~~~~~~~a~~l~~~L~~~---~~i--~~~g~~~~~~~~~vv~~~~-----~~~~~g~~---~~~l~~~L~ 928 (985)
.+.++++ .++..++.++|+++|++. .++ .+.+. +.. +-+.+.. +......+ ...+...|.
T Consensus 337 ~l~~~~~---~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~-G~m---~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll 409 (454)
T 4ao9_A 337 KLFTPEA---AGALAERGEALRARLNALCANEGVAMQFTGI-GSL---MNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLL 409 (454)
T ss_dssp HTSCHHH---HHHHHHHHHHHHHHHHHHHHHHTBSCEEEEE-TTE---EEEESCCSCCCSGGGGTTCCHHHHHHHHHHHH
T ss_pred HHhccCh---hHHHHHHHHHHHHHHHHHHhhCCCCEEEeee-ceE---EEEEEecCCCCCHHHHHhhhHHHHHHHHHHHH
Confidence 8876654 345667788888888651 122 11111 111 1222210 00000112 235667789
Q ss_pred HCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHHH
Q 001990 929 DYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTTF 977 (985)
Q Consensus 929 e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~~ 977 (985)
++||++... +.+ .++..+|++||| +++++|++++.+...
T Consensus 410 ~~Gv~~~p~-----~~~--~~s~~~T~~dId---~~l~al~~~l~~~~a 448 (454)
T 4ao9_A 410 NEDIYSSPR-----GFV--VLSLPLTDADID---RYVAAIGSFIGGHGA 448 (454)
T ss_dssp HTTEECCTT-----CEE--ECCTTCCHHHHH---HHHHHHHHHHHHSGG
T ss_pred HCCEEEcCC-----CCE--EEeCCCCHHHHH---HHHHHHHHHHHhccc
Confidence 999987522 333 345568999999 999999999887543
No 220
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.75 E-value=1.1e-16 Score=183.55 Aligned_cols=281 Identities=14% Similarity=0.140 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHHhCCCcc-ceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCCCcHHHHHhcCcE-------
Q 001990 633 MFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPATAAMCGMK------- 703 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~-~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~-~~Hg~~~~~~~~~G~~------- 703 (985)
...++++++++++|.+.. .++.++|++++..++.+++.+ .++++||+++ .+|+.....+...|.+
T Consensus 88 ~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~------~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~ 161 (395)
T 1vef_A 88 MRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAH------TGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFL 161 (395)
T ss_dssp HHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHH------HSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGC
T ss_pred HHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHH------hCCCeEEEEcCCcCCCchhhhhhcCCcccccccC
Confidence 567899999999976543 356677888776666555432 1356677655 4677776666666654
Q ss_pred -----EEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccccccc
Q 001990 704 -----IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 704 -----v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~d----i~eI~~la~~~g~lliVD~a~~~~~ 773 (985)
+..++. .|+++|+++++ +++++|+++.+ |.+|.+. | +++|+++|+++|+++|+|++|. ++
T Consensus 162 p~~~~~~~~~~-----~d~~~l~~~i~---~~~~~v~~~~~~~~tG~~~-~~~~~l~~i~~l~~~~~~~li~Dea~~-~~ 231 (395)
T 1vef_A 162 PLVEPVEFIPY-----NDVEALKRAVD---EETAAVILEPVQGEGGVRP-ATPEFLRAAREITQEKGALLILDEIQT-GM 231 (395)
T ss_dssp SCSSCEEEECT-----TCHHHHHHHCC---TTEEEEEECSEETTTTSEE-CCHHHHHHHHHHHHHHTCEEEEECTTT-TT
T ss_pred CCCCCeeEeCC-----CcHHHHHHHhc---cCEEEEEEeCccCCCCccC-CCHHHHHHHHHHHHHcCCEEEEEeccc-CC
Confidence 444443 48999999997 68888877544 4689876 6 9999999999999999999986 33
Q ss_pred cCCCCC-----CcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccch
Q 001990 774 VGLTSP-----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWG 848 (985)
Q Consensus 774 ~g~~~~-----g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g 848 (985)
+..... ...++|+++ +||+|+ +|.++|++++++++.+.+..... .. +.+.
T Consensus 232 ~~~g~~~~~~~~~~~~d~~s--~sK~~~-----~g~~~G~~~~~~~~~~~l~~~~~------------~~--~~~~---- 286 (395)
T 1vef_A 232 GRTGKRFAFEHFGIVPDILT--LAKALG-----GGVPLGVAVMREEVARSMPKGGH------------GT--TFGG---- 286 (395)
T ss_dssp TTTSSSSTHHHHTCCCSEEE--ECGGGG-----TTSSCEEEEEEHHHHHTSCTTSS------------CC--SSTT----
T ss_pred ccCCchhHhhhcCCCCCEEE--Eccccc-----CCCceEEEEehHHHHhhhccCCc------------CC--CcCC----
Confidence 211111 123478874 489985 35788999998877665532100 01 1111
Q ss_pred hhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHH
Q 001990 849 SALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRL 927 (985)
Q Consensus 849 ~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L 927 (985)
+...+.++.+.+..+..+ +..++..++++++.+.|++ +..+....+ ...+.+.++++ + +..++.+.|
T Consensus 287 ~~~~~~a~~~al~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~g~~~~~~~~------~-~~~~l~~~l 354 (395)
T 1vef_A 287 NPLAMAAGVAAIRYLERT---RLWERAAELGPWFMEKLRAIPSPKIREVR--GMGLMVGLELK------E-KAAPYIARL 354 (395)
T ss_dssp CHHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHTSCCTTEEEEE--EETTEEEEEES------S-CSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHhhcCceEEEE--EEEEEEEEEEc------C-hHHHHHHHH
Confidence 122233344445544332 2345667788899999987 322211000 01112345553 1 357899999
Q ss_pred H-HCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHH
Q 001990 928 M-DYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLT 972 (985)
Q Consensus 928 ~-e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~ 972 (985)
. ++||.+.... ++.+|++++..+|++|++ +++++|++++
T Consensus 355 ~~~~gi~v~~~~---~~~iRi~~~~~~~~~~i~---~~~~~l~~~l 394 (395)
T 1vef_A 355 EKEHRVLALQAG---PTVIRFLPPLVIEKEDLE---RVVEAVRAVL 394 (395)
T ss_dssp HHHHCEECEESS---TTEEEECCCTTCCHHHHH---HHHHHHHHHH
T ss_pred HHHCCeEEecCC---CCEEEEeCCCCCCHHHHH---HHHHHHHHHh
Confidence 8 8999875322 478999999999999999 9999998764
No 221
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.75 E-value=1.2e-16 Score=183.53 Aligned_cols=273 Identities=14% Similarity=0.112 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-
Q 001990 210 LESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL- 288 (985)
Q Consensus 210 l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~- 288 (985)
.+...++++.+|+++|.+ . ..++.+||.+++.++.++. +++|+|+++...|+++...++ ..|++++.++.
T Consensus 89 ~~~~~~l~~~la~~~g~~-~-~i~~~sGs~a~~~~~~~~~---~~gd~v~~~~~~~~~~~~~~~----~~g~~~~~~~~~ 159 (401)
T 1fc4_A 89 QDSHKELEQKLAAFLGME-D-AILYSSCFDANGGLFETLL---GAEDAIISDALNHASIIDGVR----LCKAKRYRYANN 159 (401)
T ss_dssp BHHHHHHHHHHHHHHTCS-E-EEEESCHHHHHHTTHHHHC---CTTCEEEEETTCCHHHHHHHH----TSCSEEEEECTT
T ss_pred cHHHHHHHHHHHHHhCCC-c-EEEeCChHHHHHHHHHHHc---CCCCEEEEcchhHHHHHHHHH----HcCCceEEECCC
Confidence 455678889999999988 3 4466777777666555442 378999999999998887653 46888888753
Q ss_pred --hhhhc-cCC------CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCC---------CCcccc
Q 001990 289 --KDIDY-KSG------DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP---------PGELGA 349 (985)
Q Consensus 289 --~~l~~-l~~------~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~---------p~~~Ga 349 (985)
+++++ +.+ ++++|++.+| |++|.+.|+++|.++|+++|+++++| +..+.+...+ ....++
T Consensus 160 d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D-e~~~~g~~~~~g~~~~~~~~~~~~~ 238 (401)
T 1fc4_A 160 DMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVD-DSHAVGFVGENGRGSHEYCDVMGRV 238 (401)
T ss_dssp CHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEE-CTTTTTTSSTTSCCHHHHTTCTTCC
T ss_pred CHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEE-CcccccccCCCCCccHHHcCCCcCC
Confidence 55665 432 7899999988 78999999999999999999999995 3444444311 112368
Q ss_pred eEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHH
Q 001990 350 DIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLA 428 (985)
Q Consensus 350 Di~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a 428 (985)
|++++|. |.|+++ +| |++++++++++.+... ...+ .. ..+.|. ....+
T Consensus 239 di~~~s~sK~~~~~-----~g-G~~~~~~~~~~~l~~~----------~~~~-----------~~-~~~~~~---~~~~a 287 (401)
T 1fc4_A 239 DIITGTLGKALGGA-----SG-GYTAARKEVVEWLRQR----------SRPY-----------LF-SNSLAP---AIVAA 287 (401)
T ss_dssp SEEEEESSSTTCSS-----SC-EEEEECHHHHHHHHHH----------CHHH-----------HH-SCCCCH---HHHHH
T ss_pred cEEEecchhhccCC-----CC-EEEEcCHHHHHHHHHh----------CcCc-----------ee-CCCCCH---HHHHH
Confidence 9999998 877432 33 8999998887665110 0000 00 111111 22222
Q ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeeec--
Q 001990 429 NMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVVD-- 503 (985)
Q Consensus 429 ~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~---~~~l~~~L~~~Gi~~~~~~-- 503 (985)
..+++ ..+. + .+++.++..++.+++.+.|+++| +++.. +...-+.+.+++ ..++.++|.++||.+....
T Consensus 288 ~~~~l--~~~~-~-~~~~~~~~~~~~~~l~~~L~~~g-~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~ 361 (401)
T 1fc4_A 288 SIKVL--EMVE-A-GSELRDRLWANARQFREQMSAAG-FTLAG-ADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYP 361 (401)
T ss_dssp HHHHH--HHHH-T-CHHHHHHHHHHHHHHHHHHHHTT-CCBCC-SSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTT
T ss_pred HHHHH--HHHh-c-CHHHHHHHHHHHHHHHHHHHHcC-CcccC-CCCCEEEEEcCChHHHHHHHHHHHHCCcEEeeecCC
Confidence 23332 3321 1 36788888999999999999986 77663 222234455543 6789999999999876431
Q ss_pred -----CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 504 -----SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 -----~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.+.+|++++..+|++|+++++++|..
T Consensus 362 ~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 392 (401)
T 1fc4_A 362 VVPKGQARIRTQMSAAHTPEQITRAVEAFTR 392 (401)
T ss_dssp SSCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 24799999999999999999999974
No 222
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.74 E-value=1.5e-16 Score=182.77 Aligned_cols=274 Identities=12% Similarity=0.090 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHh-hhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-
Q 001990 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCN-NIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~-~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~- 288 (985)
+...++++.+|+++|.+ .++ ++.+|+.+..+++.++ ++. +||+|+++...|+++...++. .|.+++.++.
T Consensus 91 ~~~~~l~~~la~~~~~~-~~i-~~~sG~~a~~~~~~~l~~~~--~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~v~~~ 162 (401)
T 2bwn_A 91 AYHRRLEAEIAGLHQKE-AAL-VFSSAYNANDATLSTLRVLF--PGLIIYSDSLNHASMIEGIKR----NAGPKRIFRHN 162 (401)
T ss_dssp HHHHHHHHHHHHHTTCS-EEE-EESCHHHHHHHHHHHHHHHS--TTCEEEEETTCCHHHHHHHHH----SCCCEEEECTT
T ss_pred HHHHHHHHHHHHHhCCC-cEE-EECCcHHHHHHHHHHHhcCC--CCCEEEECchhhHHHHHHHHH----cCCeEEEEcCC
Confidence 45567889999999974 344 4455555555554432 222 789999999999999988753 5788888865
Q ss_pred --hhhhc-cC----CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCCCC-----cc----cceE
Q 001990 289 --KDIDY-KS----GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPG-----EL----GADI 351 (985)
Q Consensus 289 --~~l~~-l~----~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~p~-----~~----GaDi 351 (985)
+++++ +. +++++|++.+| |++|.+.|+++|.++|+++|+++++| +..+.|.+.+.+ .+ +.|+
T Consensus 163 d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-ea~~~g~~~~~g~~~~~~~~~~~~~~i 241 (401)
T 2bwn_A 163 DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYID-EVHAVGMYGPRGAGVAERDGLMHRIDI 241 (401)
T ss_dssp CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEE-CTTTTTTSSTTSCCHHHHHTCGGGCSE
T ss_pred CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEe-ccccccccCCCCceeeeccCccccCcE
Confidence 35554 43 57899999988 68999999999999999999999995 344544432221 12 3589
Q ss_pred EEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHH
Q 001990 352 VVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANM 430 (985)
Q Consensus 352 ~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~ 430 (985)
+++|. |.|+. || |++..++++.+.+.. .....+...+|++ ....++.
T Consensus 242 ~~~s~sK~~~~------~G-G~~~~~~~~~~~l~~---------------------~~~~~~~~~~~~~----~~~~a~~ 289 (401)
T 2bwn_A 242 FNGTLAKAYGV------FG-GYIAASARMVDAVRS---------------------YAPGFIFSTSLPP----AIAAGAQ 289 (401)
T ss_dssp EEEESSSTTCS------CC-EEEEECHHHHHHHHH---------------------HCHHHHTSBCCCH----HHHHHHH
T ss_pred EEeechhhccC------CC-CEEecCHHHHHHHHH---------------------hCcCceecCCCCH----HHHHHHH
Confidence 98887 88763 33 788888777654310 0000111112211 2222333
Q ss_pred HHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecCC---HHHHHHHHH-HcCceeeeec---
Q 001990 431 AAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAY-KIEMNLRVVD--- 503 (985)
Q Consensus 431 aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~---~~~l~~~L~-~~Gi~~~~~~--- 503 (985)
+++ .++...|++++.++..++.+++++.|+++| +++... ....+.+..+. +.++.+.|. ++||.+....
T Consensus 290 ~al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~~ 365 (401)
T 2bwn_A 290 ASI--AFLKTAEGQKLRDAQQMHAKVLKMRLKALG-MPIIDH-GSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPT 365 (401)
T ss_dssp HHH--HHHTSHHHHHHHHHHHHHHHHHHHHHHHHT-CCBCCC-SSSCEEEECCCHHHHHHHHHHHHHHHCEECCEECTTT
T ss_pred HHH--HHHHhcccHHHHHHHHHHHHHHHHHHHHCC-CcccCC-CCCeEEEEeCChHHHHHHHHHHHhcCCEEEeecCCCC
Confidence 333 556566788999999999999999999886 777642 22346666653 678999996 7899885431
Q ss_pred -C---CeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 504 -S---NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 -~---~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+ +.+|++++.++|++|+++++++|..
T Consensus 366 ~~~~~~~iRis~~~~~t~~~i~~~~~~l~~ 395 (401)
T 2bwn_A 366 VPRGTERLRFTPSPVHDLKQIDGLVHAMDL 395 (401)
T ss_dssp SCTTCCEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEeeCCCCHHHHHHHHHHHHH
Confidence 1 4899999999999999999999974
No 223
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.74 E-value=8.9e-17 Score=187.10 Aligned_cols=267 Identities=19% Similarity=0.177 Sum_probs=182.0
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--- 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~~--- 289 (985)
..++++.+|+++|.+ ...++.+|++++++++.++. . +||+||+++..|+++...++..++..|+++++++.+
T Consensus 116 ~~~l~~~lA~l~g~~--~~v~~~sG~~Ai~~al~~l~-~--~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~ 190 (445)
T 1qgn_A 116 TVVLEEKISALEGAE--STLLMASGMCASTVMLLALV-P--AGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVG 190 (445)
T ss_dssp HHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHS-C--SSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHH
T ss_pred HHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHh-C--CCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHH
Confidence 456778999999987 35677888877777666542 2 789999999999999888776667789999999764
Q ss_pred hhhc-cCCCE-eEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCCCCcccceEEEecC-ccccccCCC
Q 001990 290 DIDY-KSGDV-CGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 290 ~l~~-l~~~t-~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~p~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
++++ ++++| ++|++++| |.+|.+.|+++|+++||++|++++|| +.++.+....|.++|+|++++|+ |.++
T Consensus 191 ~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD-~a~~~~~~~~~~~~g~Div~~S~sK~~g----- 264 (445)
T 1qgn_A 191 ALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCID-GTFATPLNQKALALGADLVLHSATKFLG----- 264 (445)
T ss_dssp HHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEE-CTTTCTTTCCTTTTTCSEEEECTTTTTT-----
T ss_pred HHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEE-CCCcccccCCccccCCEEEEECCccccc-----
Confidence 5555 67788 99999998 68999999999999999999999995 45555555667789999999998 7664
Q ss_pred CCCc---eEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcch
Q 001990 366 GGPH---AAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEG 442 (985)
Q Consensus 366 GGP~---~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~G 442 (985)
|++ +|++++++++++.+... ++.-|+.. .++.+ |+...+.+.
T Consensus 265 -g~gd~~~G~l~~~~~l~~~l~~~-------------------------~~~~g~~~----~~~~a-----~~~~~~l~~ 309 (445)
T 1qgn_A 265 -GHNDVLAGCISGPLKLVSEIRNL-------------------------HHILGGAL----NPNAA-----YLIIRGMKT 309 (445)
T ss_dssp -CSSSCCCEEEEECHHHHHHHHHH-------------------------HHHHCCCC----CHHHH-----HHHHHHGGG
T ss_pred -ccccceEEEEEECHHHHHHHHHH-------------------------HHHhCCCC----CHHHH-----HHHHHhHHH
Confidence 233 68999998877654100 01111100 11111 111222344
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCE-EEcCC-----C-----------CcceEEEecCC-H---HHHHHHHHHcCceee-
Q 001990 443 LKTIAQRVHGLAGTFALGLKKLGTV-EVQGL-----P-----------FFDTVKVKCAD-A---HAIASAAYKIEMNLR- 500 (985)
Q Consensus 443 l~~i~~~~~~~a~~l~~~L~~~g~~-~~~~~-----~-----------~~~~~~i~~~~-~---~~l~~~L~~~Gi~~~- 500 (985)
+....++..+++.++++.|++++++ ++..+ + ....+.|.+++ . ..+.+.|...++.++
T Consensus 310 l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~~i~~s~ 389 (445)
T 1qgn_A 310 LHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSF 389 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCceEeccC
Confidence 5555667778899999999988557 44321 1 23457777764 3 334444432233211
Q ss_pred -----e---------------------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 501 -----V---------------------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 501 -----~---------------------~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
. +.++.||+|++ .||+|++++.|..
T Consensus 390 G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~ 440 (445)
T 1qgn_A 390 GGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQ 440 (445)
T ss_dssp CSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHH
T ss_pred CCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHH
Confidence 0 12478999998 3578888877753
No 224
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.74 E-value=2e-17 Score=193.36 Aligned_cols=271 Identities=13% Similarity=0.069 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--h
Q 001990 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--K 289 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~--~ 289 (985)
.+.++++.+|+ +|.+ ..+.+++|+|.+++++++++ .. +||+|++++..|+++...+.. .|.+++.++. +
T Consensus 58 ~~~~~~~~la~-~g~~-~~v~~~~G~t~a~~~~~~a~-~~--~gd~Vlv~~~~h~s~~~~~~~----~G~~~~~v~~~~~ 128 (446)
T 2x3l_A 58 VILKSMKQVEK-HSDY-DGYFLVNGTTSGILSVIQSF-SQ--KKGDILMARNVHKSVLHALDI----SQQEGHFIETHQS 128 (446)
T ss_dssp HHHHHHHHHCS-CTTE-EEEEESSHHHHHHHHHHHTT-TT--SSSCEEECTTCCHHHHHHHHH----HTCCEEECEEEEC
T ss_pred HHHHHHHHHHh-cCCC-ceEEEeCCHHHHHHHHHHHh-cC--CCCEEEEecCccHHHHHHHHH----cCCeEEEEeCeec
Confidence 35678899999 9987 45667788888888877765 23 789999999999999998864 3666666654 2
Q ss_pred h---------hhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEeccccccC-----CCCCCcccceEEEe
Q 001990 290 D---------IDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTI-----LKPPGELGADIVVG 354 (985)
Q Consensus 290 ~---------l~~-l~~~t~~V~v~~pn~~G~i~dl~~I~~~a~~~galliV~a~~~alg~-----l~~p~~~GaDi~v~ 354 (985)
+ +++ +++++++|++++||++|.+.|+++|+++||++|+++++|. .++... ..+..++|+|++++
T Consensus 129 ~~~~~~~~~d~~~l~~~~~~~v~~~~~n~~G~~~~l~~I~~l~~~~~~~livDe-a~~~~~~f~~~~~~~~~~g~Di~~~ 207 (446)
T 2x3l_A 129 PLTNHYNKVNLSRLNNDGHKLVVLTYPNYYGETFNVEEVIKSLHQLNIPVLIDE-AHGAHFGLQGFPDSTLNYQADYVVQ 207 (446)
T ss_dssp TTTSSEEEEEC-------CCEEEEESSCTTSCCCCHHHHHHHHHHTTCCEEEEC-TTCTTTTSTTSCCCGGGGTCSEEEE
T ss_pred cccCcCCCCCHHHHcCCCceEEEEECCCCCeEecCHHHHHHHHHhcCCeEEEcc-hhhhhhccCCCCCChHHcCCCEEEE
Confidence 1 122 3567899999999999999999999999999999999952 333211 11234578999999
Q ss_pred cC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHH
Q 001990 355 SA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 355 s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~ 433 (985)
|. |++++| +++|++++++++++ +. ++ +........+|+++ ..+.++.++.
T Consensus 208 S~~K~l~~~-----~g~g~l~~~~~~i~-~~-~~-------------------~~~~~~~~~~s~~~---~~~aal~~a~ 258 (446)
T 2x3l_A 208 SFHKTLPAL-----TMGSVLYIHKNAPY-RE-NI-------------------IEYLSYFQTSSPSY---LIMASLESAA 258 (446)
T ss_dssp CHHHHSSSC-----TTCEEEEEETTCTT-HH-HH-------------------HHHHHHHSCSSCCH---HHHHHHHHHH
T ss_pred CCccccccc-----cccEEEEEcCCcCC-HH-HH-------------------HHHHHHHcCCCchH---HHHHHHHHHH
Confidence 98 666533 35789999876543 10 00 00000112233333 2233333333
Q ss_pred HHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecCC--HHHHHHHHHHcCceeeeecCCeEEEEe
Q 001990 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVVDSNTVTASF 511 (985)
Q Consensus 434 y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~--~~~l~~~L~~~Gi~~~~~~~~~lris~ 511 (985)
.++...|.+++.++..++++++++. | ++++.......+.+..++ +.++.+.|.++||.++....+.+|+++
T Consensus 259 --~~l~~~g~~~~~~~~~~l~~~l~~~----g-~~~~~~~~~~~l~i~~~~~~~~~l~~~L~~~GI~v~~~g~~~iRi~~ 331 (446)
T 2x3l_A 259 --QFYKTYDSTLFFAKRAQLIECLENK----G-FEMLQVDDPLKLLIKYEGFTGHDIQNWFMNAHIYLELADDYQALAIL 331 (446)
T ss_dssp --HHHHHCCCHHHHHHHHHHHHHHHHH----T-CEEEECSSTTEEEEECTTSCHHHHHHHHHHTTEEESEECSSCEEEEC
T ss_pred --HHHHHhCHHHHHHHHHHHHHHHHHc----C-CEECcCCCCeEEEEEeCCcCHHHHHHHHHHCCCEEEecCCCEEEEEe
Confidence 3444445566788888888888887 5 777632111135666654 788999999999998744557899999
Q ss_pred ccCCCHHHHHHHHHHHhC
Q 001990 512 DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 512 ~~~~t~edid~ll~~l~~ 529 (985)
+.++|++|+ +++++|..
T Consensus 332 ~~~~t~e~i-~l~~aL~~ 348 (446)
T 2x3l_A 332 PLWHHDDTY-LFDSLLRK 348 (446)
T ss_dssp CCCCTTCCC-CHHHHHHH
T ss_pred ecCCCHHHH-HHHHHHHH
Confidence 999999999 99999874
No 225
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.74 E-value=1.7e-16 Score=184.97 Aligned_cols=300 Identities=14% Similarity=0.109 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHHHhCCC--ccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCCCcHHHHHhcCcE-----
Q 001990 632 EMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGMK----- 703 (985)
Q Consensus 632 ~~~~el~~~la~l~G~~--~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv-~~~~Hg~~~~~~~~~G~~----- 703 (985)
+...+++++++++++.. ...+++++|++++++++.+++.+. ++++||+ ...+|+.....+...|..
T Consensus 86 ~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~ 159 (439)
T 3dxv_A 86 APAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKAT------GRSGVIAFAGAYHGCTVGSMAFSGHSVQADA 159 (439)
T ss_dssp HHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHH------SCCEEEEETTCCCCSSHHHHCC---------
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHh------CCCEEEEECCCCCCCcHHHHhhcCCCchhhc
Confidence 46778999999999543 345778899988877777665442 3445555 667888877665444432
Q ss_pred ---------EEEEeCCCCCCC-----CHHHHHHHHH-hcCCCeEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEE
Q 001990 704 ---------IVSVGTDAKGNI-----NIEELRKAAE-ANRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQV 763 (985)
Q Consensus 704 ---------v~~v~~~~~g~i-----Dle~L~~~i~-~~~~~t~~Vvi~~p-n~~G~i~~d----i~eI~~la~~~g~ll 763 (985)
+..+|.+..+.. |+++|+++++ .+.+++++|+++.+ ++.|.+. + +++|+++|++||+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~-~~~~~l~~l~~l~~~~~~~l 238 (439)
T 3dxv_A 160 AKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIV-PPDGFLRKFADICRAHGILV 238 (439)
T ss_dssp ----CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBC-CCTTHHHHHHHHHHHTTCEE
T ss_pred cccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCcc-CCHHHHHHHHHHHHHcCCEE
Confidence 233444332223 7999999993 33367887777665 4578876 5 999999999999999
Q ss_pred EEEccccccccCCCCC---C--cCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCC
Q 001990 764 YMDGANMNAQVGLTSP---G--YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQP 838 (985)
Q Consensus 764 iVD~a~~~~~~g~~~~---g--~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~ 838 (985)
|+|++|. +++..... . ...+|++++ .|+|+ +|.++|++++++++++.+..... ..
T Consensus 239 i~DE~~~-g~g~~g~~~~~~~~~~~~di~s~--sK~~~-----~G~riG~~~~~~~~~~~~~~~~~------------~~ 298 (439)
T 3dxv_A 239 VCDEVKV-GLARSGRLHCFEHEGFVPDILVL--GKGLG-----GGLPLSAVIAPAEILDCASAFAM------------QT 298 (439)
T ss_dssp EEECTTT-CTTTTSSSSGGGGTTCCCSEEEE--CGGGG-----TTSCCEEEEEEHHHHTSCSSSSC------------CT
T ss_pred EEecccc-CCCcCchhhHHHhcCCCCCEEEE--cchhc-----CCcceEEEEECHHHHhhhcCCCc------------CC
Confidence 9999985 22111111 1 123688754 58885 35678999999888766542110 01
Q ss_pred CCCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc---CCee--EcCCCCceeEEEEEEecC--
Q 001990 839 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRG-- 911 (985)
Q Consensus 839 t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~---~~i~--~~g~~~~~~~~~vv~~~~-- 911 (985)
+ + +++..++++.+.+..+..+.+ .++..++.+++++.|++. +... ..+ .+.+. .+.+..
T Consensus 299 t------~-~~~~~~~aa~aal~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~g~~~---~~~~~~~~ 364 (439)
T 3dxv_A 299 L------H-GNPISAAAGLAVLETIDRDDL---PAMAERKGRLLRDGLSELAKRHPLIGDIRG-RGLAC---GMELVCDR 364 (439)
T ss_dssp T------T-TCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCTTEEEEEE-ETTEE---EEEEEEET
T ss_pred C------c-ccHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHhCCCeEEEEE-EEEEE---EEEEecCc
Confidence 1 1 133344445555555444433 345566677777777652 2221 111 12222 222210
Q ss_pred -ccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHH
Q 001990 912 -LKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 912 -~~~~~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
.....+....++.+.|.++|+.+.... ..++.+|++++..+|++|++ +++++|+++++++.
T Consensus 365 ~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~~iRi~~~~~~t~e~i~---~~l~~l~~~l~~~~ 426 (439)
T 3dxv_A 365 QSREPARAETAKLIYRAYQLGLVVYYVG-MNGNVLEFTPPLTITETDIH---KALDLLDRAFSELS 426 (439)
T ss_dssp TTTEECHHHHHHHHHHHHHHTEECEEES-TTSCEEEECCCTTCCHHHHH---HHHHHHHHHHHTGG
T ss_pred cccCCCHHHHHHHHHHHHHCCcEEeecC-CCCCEEEEECCCCCCHHHHH---HHHHHHHHHHHHHh
Confidence 000011235678999999999875332 11488999999999999999 99999999887653
No 226
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.74 E-value=6.2e-17 Score=183.63 Aligned_cols=286 Identities=11% Similarity=0.049 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHhCCCccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCCC
Q 001990 634 FNNLGEWLCTITGFDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK 712 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~~ 712 (985)
..++++.+++++|.+... ++.++|++++..+ ++.+ ++++|+++.+.|..+...++..|.+++.+|.+++
T Consensus 61 ~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~---~~~~-------~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~ 130 (364)
T 1lc5_A 61 YFHLHQALARHHQVPASWILAGNGETESIFTV---ASGL-------KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREA 130 (364)
T ss_dssp CHHHHHHHHHHHTSCGGGEEEESSHHHHHHHH---HHHH-------CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGG
T ss_pred HHHHHHHHHHHHCcCHHHEEECCCHHHHHHHH---HHHc-------CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcc
Confidence 347888999999987644 4555566555333 3322 2378999887776666667888999999998753
Q ss_pred CCCC-HHHHHHHHHhcCCCeEEEEEEcCC-CccccccC---HHHHHHHHHHcCCEEEEEcccccccc-C---CCCCCcCC
Q 001990 713 GNIN-IEELRKAAEANRDNLSTLMVTYPS-THGVYEEG---IDEICKIIHDNGGQVYMDGANMNAQV-G---LTSPGYIG 783 (985)
Q Consensus 713 g~iD-le~L~~~i~~~~~~t~~Vvi~~pn-~~G~i~~d---i~eI~~la~~~g~lliVD~a~~~~~~-g---~~~~g~~g 783 (985)
..++ ++++.+.++ +++++|++++|+ ++|.+. + +++|+++|+++|+++++|++|..... + +......+
T Consensus 131 ~~~~~l~~~~~~~~---~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 206 (364)
T 1lc5_A 131 DGWQLTDAILEALT---PDLDCLFLCTPNNPTGLLP-ERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNP 206 (364)
T ss_dssp GTTCCCTTHHHHCC---TTCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCT
T ss_pred cccchhHHHHHhcc---CCCCEEEEeCCCCCCCCCC-CHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCC
Confidence 2234 454555443 678889999994 689987 5 99999999999999999999853221 1 11113356
Q ss_pred CcEEEeCCcccccccCCCCCCcceeee-ecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHH
Q 001990 784 ADVCHLNLHKTFCIPHGGGGPGMGPIG-VKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 784 ~Di~~~s~hKtl~~p~g~GGPg~G~l~-~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~ 862 (985)
.|+++.|+||+|+. +|.++|+++ +++++.+.+.... .+.+. +.....++.+++..
T Consensus 207 ~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~l~~~~--------------~~~~~------~~~~~~~~~~~l~~ 262 (364)
T 1lc5_A 207 HIWVLRSLTKFYAI----PGLRLGYLVNSDDAAMARMRRQQ--------------MPWSV------NALAALAGEVALQD 262 (364)
T ss_dssp TEEEEEESTTTTTC----TTTCCEEEECCCHHHHHHHHHHS--------------CTTCS------CHHHHHHHHHGGGC
T ss_pred CEEEEEECchhhcC----CccceEEEEECCHHHHHHHHHhC--------------CCCCC------CHHHHHHHHHHHhC
Confidence 78999999999853 356789998 8877665432100 00011 11112222223322
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-CC-
Q 001990 863 MGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-WP- 940 (985)
Q Consensus 863 lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~-~p- 940 (985)
.+.+.+..++..++++++.+.|++...+...++.+.+ +.++++ . +..++.+.|.++||.+.... ++
T Consensus 263 --~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~---~~~~~~------~-~~~~l~~~l~~~gi~v~~g~~~~~ 330 (364)
T 1lc5_A 263 --SAWQQATWHWLREEGARFYQALCQLPLLTVYPGRANY---LLLRCE------R-EDIDLQRRLLTQRILIRSCANYPG 330 (364)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSSSE---EEEEES------C-TTCCHHHHHHTTTEECEECTTSTT
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCCCeE---EEEECC------C-cHHHHHHHHHHCCcEEeeCcccCC
Confidence 2345566666778888999999763233332222222 334553 1 23468889999999874322 21
Q ss_pred -CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 941 -VPGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 941 -v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
-++.+|+++ .+++|++ +++++|+++++++
T Consensus 331 ~~~~~iRis~---~~~~~~~---~l~~~l~~~~~~~ 360 (364)
T 1lc5_A 331 LDSRYYRVAI---RSAAQNE---RLLAALRNVLTGI 360 (364)
T ss_dssp CCTTEEEEEC---CCHHHHH---HHHHHHHHHC---
T ss_pred CCCCEEEEEe---CCHHHHH---HHHHHHHHHhhcc
Confidence 147899997 4789999 9999999887654
No 227
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.74 E-value=1.4e-15 Score=177.95 Aligned_cols=310 Identities=15% Similarity=0.160 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCCCcHHHHHhcC---------
Q 001990 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG--------- 701 (985)
Q Consensus 632 ~~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv-~~~~Hg~~~~~~~~~G--------- 701 (985)
+...+++++++++++.+...+++++|++++++++.+++.|+...|..++++||+ ...+||.........|
T Consensus 91 ~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 170 (452)
T 3n5m_A 91 EPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYE 170 (452)
T ss_dssp HHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTC
T ss_pred HHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccC
Confidence 356688999999998665467788999999888888877654443335677877 4467777655543222
Q ss_pred ---cEEEEEeCCCCC---CCC---------HHHHHHHHH-hcCCCeEEEEEEcC--CCccccccC----HHHHHHHHHHc
Q 001990 702 ---MKIVSVGTDAKG---NIN---------IEELRKAAE-ANRDNLSTLMVTYP--STHGVYEEG----IDEICKIIHDN 759 (985)
Q Consensus 702 ---~~v~~v~~~~~g---~iD---------le~L~~~i~-~~~~~t~~Vvi~~p--n~~G~i~~d----i~eI~~la~~~ 759 (985)
..+..++..... ..| +++|+++++ ++.+++++|+++.+ | +|.+. + +++|+++|++|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~-~~~~~l~~l~~l~~~~ 248 (452)
T 3n5m_A 171 PFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILM-APQDYMKAVHETCQKH 248 (452)
T ss_dssp CCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBC-CCTTHHHHHHHHHHHH
T ss_pred CCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeee-CCHHHHHHHHHHHHHc
Confidence 124455542111 123 899999997 33357888888776 7 88765 4 99999999999
Q ss_pred CCEEEEEccccccccCCCC---CCc--CCCcEEEeCCcccccccCCCCC-CcceeeeecccccCcCCCCccccCCCCCCC
Q 001990 760 GGQVYMDGANMNAQVGLTS---PGY--IGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAP 833 (985)
Q Consensus 760 g~lliVD~a~~~~~~g~~~---~g~--~g~Di~~~s~hKtl~~p~g~GG-Pg~G~l~~~~~l~~~lpg~~~g~~~~~~~~ 833 (985)
|++||+|++|. +++-... ... ..+|++++ .|+|+ +| .++|++++++++++.+.......
T Consensus 249 ~~llI~DEv~~-g~g~~g~~~~~~~~~~~~di~t~--sK~l~-----~G~~~ig~~~~~~~i~~~~~~~~~~~------- 313 (452)
T 3n5m_A 249 GALLISDEVIC-GFGRTGKAFGFMNYDVKPDIITM--AKGIT-----SAYLPLSATAVKREIYEAFKGKGEYE------- 313 (452)
T ss_dssp TCEEEEECTTT-TTTTTSSSSGGGGTTCCCSEEEE--CGGGG-----TTSSCCEEEEEEHHHHGGGCSSSTTC-------
T ss_pred CCEEEEecchh-CCCcccccchhhhcCCCCCEEee--ccccc-----CCCcceEEEEECHHHHHHHhhccCCC-------
Confidence 99999999874 2211111 111 23688765 48874 36 68999999988877653200000
Q ss_pred CCCCCCCCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc---CC-ee-EcCCCCceeEEEEEE
Q 001990 834 EKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YP-IL-FRGVNGTVAHEFIVD 908 (985)
Q Consensus 834 ~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~---~~-i~-~~g~~~~~~~~~vv~ 908 (985)
....+ .. +.+++..++++.+.+..+..+++ .++..++.+++++.|++. +. +. ..+ .+... .++
T Consensus 314 ~~~~~-~t----~~~~~~~~aaa~aal~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~~---~i~ 381 (452)
T 3n5m_A 314 FFRHI-NT----FGGNPAACALALKNLEIIENENL---IERSAQMGSLLLEQLKEEIGEHPLVGDIRG-KGLLV---GIE 381 (452)
T ss_dssp SCCCC-CS----STTCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHTTCTTEEEEEE-SSSCE---EEE
T ss_pred Ccccc-CC----CCCCHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHHHHhcCCCeEEEEE-EEEEE---EEE
Confidence 00000 11 11234445555666666544443 345556667777777642 22 11 111 12222 222
Q ss_pred ecCcccc-CCC---CHHHHHHHHHHCCCccCCCCCC---CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHH
Q 001990 909 LRGLKNT-AGI---EPEDVAKRLMDYGFHGPTMSWP---VPGTLMIEPTESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 909 ~~~~~~~-~g~---~~~~l~~~L~e~Gi~~~~~~~p---v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
+...... ... ...++.+.|.++|+.+.....+ ..+.|||+|+..+|++||+ +++++|+++++
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~---~~l~~l~~~l~ 450 (452)
T 3n5m_A 382 LVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIA---FVIGTLKTAME 450 (452)
T ss_dssp EEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHH---HHHHHHHHHHT
T ss_pred EecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHH---HHHHHHHHHHH
Confidence 2100000 000 1357888999999987543321 2478999999999999999 99999988764
No 228
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.74 E-value=1.9e-17 Score=188.25 Aligned_cols=295 Identities=17% Similarity=0.104 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCCC-
Q 001990 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAK- 712 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~~- 712 (985)
..++++.+++++|.+. .+++++|+++++.++.+++ ..++++|+++...|..+...+...|++++.++++++
T Consensus 37 ~~~l~~~la~~~~~~~-~~~~~sGt~al~~al~~~~-------~~~gd~Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 108 (367)
T 3nyt_A 37 VTELEDRLADFVGAKY-CISCANGTDALQIVQMALG-------VGPGDEVITPGFTYVATAETVALLGAKPVYVDIDPRT 108 (367)
T ss_dssp HHHHHHHHHHHHTCSE-EEEESCHHHHHHHHHHHTT-------CCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHhCCCc-EEEeCCHHHHHHHHHHHhC-------CCCcCEEEECCCccHHHHHHHHHcCCEEEEEecCCcc
Confidence 6688999999999884 4667888877655544331 246789999999888777778889999999999866
Q ss_pred CCCCHHHHHHHHHhcCCCeEEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEccccccccCC-CCCCcCCCcEEEeCC
Q 001990 713 GNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGL-TSPGYIGADVCHLNL 791 (985)
Q Consensus 713 g~iDle~L~~~i~~~~~~t~~Vvi~~pn~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~-~~~g~~g~Di~~~s~ 791 (985)
+.+|+++|+++++ +++++|+++ |.+|... |+++|.++|+++|+++|+|++|..+...- ...+.++ |++++|+
T Consensus 109 ~~~d~~~l~~~i~---~~~~~v~~~--~~~G~~~-~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~-di~~~Sf 181 (367)
T 3nyt_A 109 YNLDPQLLEAAIT---PRTKAIIPV--SLYGQCA-DFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLS-TVACTSF 181 (367)
T ss_dssp CSBCGGGTGGGCC---TTEEEECCB--CGGGCCC-CHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTSSS-SEEEEEC
T ss_pred CCcCHHHHHHhcC---cCCcEEEee--CCccChh-hHHHHHHHHHHcCCEEEEECccccCCeECCeeccCCC-CEEEEEC
Confidence 8999999999997 789988844 4679887 89999999999999999999986433211 1123344 9999985
Q ss_pred --cccccccCCCCCCcceeeeec-ccccCcCCC-CccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhchhh
Q 001990 792 --HKTFCIPHGGGGPGMGPIGVK-KHLAPFLPS-HPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 792 --hKtl~~p~g~GGPg~G~l~~~-~~l~~~lpg-~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~g 867 (985)
||+|+.+ |. +|+++.+ +++.+.+.. ...|.... ..+ ...+. +... ....++.+...+ +.
T Consensus 182 ~~~K~l~~~----g~-gg~~~~~~~~l~~~~~~~~~~g~~~~-~~~-~~~g~-~~~~----~~~~aa~~~~~l-----~~ 244 (367)
T 3nyt_A 182 FPSAPLGCY----GD-GGAIFTNDDELATAIRQIARHGQDRR-YHH-IRVGV-NSRL----DTLQAAILLPKL-----EI 244 (367)
T ss_dssp CTTSSSCCS----SC-CEEEEESCHHHHHHHHHHTBTTEEET-TEE-CSCCC-BCCC----CHHHHHHHHHHH-----HT
T ss_pred CCCCcCCCc----Cc-eeEEEeCCHHHHHHHHHHHhcCCCcC-cee-eccCc-CCCc----cHHHHHHHHHHH-----HH
Confidence 8988421 22 5677764 444433211 00111000 000 00010 1111 122222222222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCC-CceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCC-C----
Q 001990 868 LTEASKIAILNANYMAKRLEK-HYPILFRGVN-GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSW-P---- 940 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~-~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~-p---- 940 (985)
+.+..++..++++++.+.|++ ++.+...... ....+.+.+.+. +..++.+.|.++||.+..... |
T Consensus 245 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~L~~~GI~~~~~~~~~~~~~ 316 (367)
T 3nyt_A 245 FEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD--------NRESVQASLKAAGVPTAVHYPIPLNKQ 316 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS--------SHHHHHHHHHHHTCCCBCSCSSCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC--------CHHHHHHHHHHCCCceeccCCCccccC
Confidence 445556667788899999987 3333211111 111222334332 578899999999998643211 1
Q ss_pred --C--------------CCEEEEeccCCCCHHhhchHHHHHHHHHHH
Q 001990 941 --V--------------PGTLMIEPTESESKVCHNREDLFFQILLSL 971 (985)
Q Consensus 941 --v--------------~~~lris~t~~~t~eeId~~~~~i~aL~~i 971 (985)
. ...|++++....|++||| +++++|++-
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~---~v~~~~~~~ 360 (367)
T 3nyt_A 317 PAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIK---IICAALTNL 360 (367)
T ss_dssp GGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHH---HHHHHHHC-
T ss_pred hhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHH---HHHHHHHHH
Confidence 0 246899999999999999 999998754
No 229
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.74 E-value=1.2e-16 Score=183.06 Aligned_cols=274 Identities=15% Similarity=0.089 Sum_probs=191.4
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---h
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---K 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~---~ 289 (985)
..++++.+|+++|.+ ...++.+||.+++.++.++ .. +||+|+++...|+++...++..++..|++++.++. +
T Consensus 54 ~~~l~~~la~~~~~~--~~i~~~sGt~a~~~~~~~~-~~--~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~ 128 (386)
T 1cs1_A 54 RDVVQRALAELEGGA--GAVLTNTGMSAIHLVTTVF-LK--PGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQ 128 (386)
T ss_dssp HHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHH-CC--TTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHH
T ss_pred HHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHH-hC--CCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCCCHH
Confidence 456788999999987 3556677787777666554 22 78999999999999888887666778999998875 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001990 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~p~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ +++++++|++++| |.+|.+.|+++|.++|+++|+++++| +..+.+....+.++|+|++++|. |.|++| |
T Consensus 129 ~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-e~~~~~~~~~~~~~~~di~~~s~sK~~~~~---~ 204 (386)
T 1cs1_A 129 ALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVD-NTFLSPALQNPLALGADLVLHSCTKYLNGH---S 204 (386)
T ss_dssp HHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEE-CTTTCTTTCCGGGGTCSEEEEETTTTTTCS---S
T ss_pred HHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEE-CCCcccccCCccccCceEEEEcCcccccCC---C
Confidence 5555 6778999999988 68999999999999999999999995 34454444445578999999998 877644 1
Q ss_pred CCceEEEEEch-hhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHH
Q 001990 367 GPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKT 445 (985)
Q Consensus 367 GP~~G~l~~~~-~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~ 445 (985)
++-.|++++++ ++.+.+.....+ ..++. .++.+ .++. . +.+.+++
T Consensus 205 ~~~~G~~~~~~~~l~~~l~~~~~~------------------------~~~~~-----~~~~~-~~~~--~--~l~~~~~ 250 (386)
T 1cs1_A 205 DVVAGVVIAKDPDVVTELAWWANN------------------------IGVTG-----GAFDS-YLLL--R--GLRTLVP 250 (386)
T ss_dssp CCCCEEEEESSHHHHHHHHHHHHH------------------------HTCBC-----CHHHH-HHHH--H--HHTTHHH
T ss_pred CceeEEEEeCcHHHHHHHHHHHHh------------------------cCCCC-----CHHHH-HHHH--h--cccHHHH
Confidence 22238999886 666654110000 00111 11111 1111 1 1123556
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEc--CC---------------CCcceEEEecCC-HHHHHHHHHHcCceeee------
Q 001990 446 IAQRVHGLAGTFALGLKKLGTVEVQ--GL---------------PFFDTVKVKCAD-AHAIASAAYKIEMNLRV------ 501 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~~~--~~---------------~~~~~~~i~~~~-~~~l~~~L~~~Gi~~~~------ 501 (985)
..++..+++.++.+.|++++.+.-. .. .....+.|.+++ ..++.+.|.++||.++.
T Consensus 251 ~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~ 330 (386)
T 1cs1_A 251 RMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGV 330 (386)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSEEBSCCCSS
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCCHHHHHHHHHhCCcceEcccCCCc
Confidence 6677788888999999887434321 11 012346666655 77888899889998752
Q ss_pred ------------------------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 502 ------------------------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ------------------------~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
..++.+|+|++..+++++++++.++|..
T Consensus 331 ~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~ 382 (386)
T 1cs1_A 331 ESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRA 382 (386)
T ss_dssp SCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred ceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHH
Confidence 1147899999999999999999999863
No 230
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.74 E-value=4.5e-17 Score=188.25 Aligned_cols=260 Identities=13% Similarity=0.084 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHhCCCcccee--cChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCCCcH-----------HHHHh
Q 001990 634 FNNLGEWLCTITGFDSFSLQ--PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNP-----------ATAAM 699 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~~~~--~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~-~~Hg~~~-----------~~~~~ 699 (985)
..++++.+|+++|.+.+.++ +++|++++.+++.++. .++|+||+++ ..|+.+. ..++.
T Consensus 75 ~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all--------~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~ 146 (427)
T 3i16_A 75 RDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNL--------RPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKE 146 (427)
T ss_dssp HHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHC--------CTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGG
T ss_pred HHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHh--------CCCCEEEEeCCCccHHHHHHHhccccchHHHHHH
Confidence 56788999999999887443 6788877644444332 4789999987 7676554 23456
Q ss_pred cCcEEEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEc----C-CCccccccCHHHHHHHHHH--cCCEEEEEcccccc
Q 001990 700 CGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTY----P-STHGVYEEGIDEICKIIHD--NGGQVYMDGANMNA 772 (985)
Q Consensus 700 ~G~~v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~----p-n~~G~i~~di~eI~~la~~--~g~lliVD~a~~~~ 772 (985)
.|++++.++.+++|.+|+++|+++++++ +++++|++++ | |++|.+. |+++|+++||+ +|++++||+++..+
T Consensus 147 ~G~~~~~v~~~~~g~~D~e~l~~~l~~~-~~tklV~i~~s~~~p~nptg~i~-dl~~i~~la~~~~~g~~livD~a~~~~ 224 (427)
T 3i16_A 147 FGINYKQVDLKEDGKPNLEEIEKVLKED-ESITLVHIQRSTGYGWRRALLIE-DIKSIVDCVKNIRKDIICFVDNCYGEF 224 (427)
T ss_dssp GTCEEEECCCCTTSSCCHHHHHHHHHTC-TTEEEEEEECSCCSSSSCCCCHH-HHHHHHHHHHHHCTTSEEEEECTTTTT
T ss_pred cCCEEEEecCccCCCcCHHHHHHHhhCC-CCCEEEEEEcCCCCCCCCcccHH-HHHHHHHHHHHhCCCCEEEEECCCccc
Confidence 7999999999888999999999999742 5799999998 8 5789998 89999999999 99999999998643
Q ss_pred ccCCCCCCcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhH
Q 001990 773 QVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 773 ~~g~~~~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~ 852 (985)
.. ...|..+|+|++++|+||+|+. .|.|.+|++++++++++.+..+.. ..+.+...+..++
T Consensus 225 ~~-~~~p~~~gaDiv~~S~sK~lgg---~g~~~gG~i~~~~~li~~l~~~~~-----------~~~~g~~~~~~~~---- 285 (427)
T 3i16_A 225 MD-TKEPTDVGADLIAGSLIKNIGG---GIAPTGGYLAGTKDCIEKTSYRLT-----------VPGIGGECGSTFG---- 285 (427)
T ss_dssp SS-SSCGGGGTCSEEEEETTSGGGT---TTCCSCEEEEECHHHHHHHHHHHS-----------CTTTGGGCCCCTT----
T ss_pred cc-cCCccccCCeEEEecCcccCCC---CCCceEEEEEECHHHHHHHHHhcc-----------cCccCccCCccHH----
Confidence 31 2355678999999999999852 122778999999887765532110 0011111110011
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeE--EEEEEecCccccCCCCHHHHHHHHHH
Q 001990 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAH--EFIVDLRGLKNTAGIEPEDVAKRLMD 929 (985)
Q Consensus 853 ~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~--~~vv~~~~~~~~~g~~~~~l~~~L~e 929 (985)
.++..++. -+.+..+.++..+++.++++.|++ ++.+ ++++ +...+ .+.+.+. +......+++.|..
T Consensus 286 --~a~~~l~g--l~~~~~r~~~~~~~a~~la~~L~~~g~~V-~p~~-~~~~~~~i~~i~l~-----~~~~~~~f~~~l~~ 354 (427)
T 3i16_A 286 --VVRSMYQG--LFLAPHISMEALKGAILCSRIMELAGFEV-MPKY-DEKRSDIIQSIKFN-----DKDKLIEFCKGIQT 354 (427)
T ss_dssp --CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCEE-ESCT-TSCCSSSCEEEECS-----SHHHHHHHHHHHHH
T ss_pred --HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhCCCee-cCCC-CCCCccEEEEEEEC-----CHHHHHHHHHHHhh
Confidence 02222222 233455667888999999999987 6655 5543 11111 1223332 01234578888887
Q ss_pred CCCc
Q 001990 930 YGFH 933 (985)
Q Consensus 930 ~Gi~ 933 (985)
....
T Consensus 355 ~~~~ 358 (427)
T 3i16_A 355 GSPI 358 (427)
T ss_dssp TCSS
T ss_pred cCcc
Confidence 6443
No 231
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.74 E-value=1.7e-17 Score=191.78 Aligned_cols=283 Identities=12% Similarity=0.034 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHH----HHhcCcEEEEEe
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVG 708 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~----~~~~G~~v~~v~ 708 (985)
...++++.+|+++|.+.. +.+++|++++.++ ++.+ ..++|+||++...|+..... ++..|+++++++
T Consensus 83 ~~~~le~~lA~l~g~~~~-i~~ssGt~Ai~~a---l~~l-----~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~ 153 (415)
T 2fq6_A 83 THFSLQQAMCELEGGAGC-VLFPCGAAAVANS---ILAF-----IEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFD 153 (415)
T ss_dssp HHHHHHHHHHHHHTCSEE-EEESSHHHHHHHH---HHTT-----CCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEEC
T ss_pred hHHHHHHHHHHHhCCCeE-EEeCCHHHHHHHH---HHHH-----hCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEEC
Confidence 466899999999998754 5567777655333 3322 13678999988866544332 235799999998
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHH--cCCEEEEEccccccccCCCCCCcCCCc
Q 001990 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHD--NGGQVYMDGANMNAQVGLTSPGYIGAD 785 (985)
Q Consensus 709 ~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~--~g~lliVD~a~~~~~~g~~~~g~~g~D 785 (985)
.+ |+++|+++|+ ++|++|++++| |++|.+. |+++|+++||+ +|+++++|++|..+. ...|-.+|+|
T Consensus 154 ~~-----d~~~le~ai~---~~tklV~~e~~~NptG~v~-dl~~I~~la~~~~~g~~livD~a~a~~~--~~~p~~~g~D 222 (415)
T 2fq6_A 154 PL-----IGADIVKHLQ---PNTKIVFLESPGSITMEVH-DVPAIVAAVRSVVPDAIIMIDNTWAAGV--LFKALDFGID 222 (415)
T ss_dssp TT-----CGGGGGGGCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHCTTCEEEEECTTTTTT--SSCGGGGTCS
T ss_pred CC-----CHHHHHHhhc---cCCcEEEEECCCCCCCEee-cHHHHHHHHHhhcCCCEEEEECCCcccc--cCCccccCCe
Confidence 64 8999999997 78999999998 5799998 89999999999 999999999986432 2345568999
Q ss_pred EEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhch
Q 001990 786 VCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGS 865 (985)
Q Consensus 786 i~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~ 865 (985)
++++|+||+|+.+ |+..+|++++++++++.+.... ...++ ..+ +. .+|..+.. .
T Consensus 223 iv~~S~sK~lg~~---g~~~~G~l~~~~~~~~~l~~~~-----------~~~G~--~~~-----~~---~a~~~~~~--l 276 (415)
T 2fq6_A 223 VSIQAATKYLVGH---SDAMIGTAVCNARCWEQLRENA-----------YLMGQ--MVD-----AD---TAYITSRG--L 276 (415)
T ss_dssp EEEEETTTTTTCS---SSCCCEEEEECTTTHHHHHHHH-----------HHTTC--CCC-----HH---HHHHHHHH--H
T ss_pred EEEEeCccccCCC---CCceEEEEEeCHHHHHHHHHHH-----------HhcCC--CCC-----HH---HHHHHHhh--h
Confidence 9999999998421 1123689988876554332100 00011 111 11 12222222 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCe---eEcCCC---C---------ceeEEEEEEecCccccCCC-CHHH---HHHH
Q 001990 866 KGLTEASKIAILNANYMAKRLEKHYPI---LFRGVN---G---------TVAHEFIVDLRGLKNTAGI-EPED---VAKR 926 (985)
Q Consensus 866 ~gl~~~~~~~~~~a~~l~~~L~~~~~i---~~~g~~---~---------~~~~~~vv~~~~~~~~~g~-~~~~---l~~~ 926 (985)
+.+....++..+++.++++.|++...+ .+++-. . .....+.|.++ +. +..+ +.+.
T Consensus 277 ~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~------g~~~~~~~~~~l~~ 350 (415)
T 2fq6_A 277 RTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLK------KKLNNEELANYLDN 350 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEES------SCCCHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC------CCCCHHHHHHHHHh
Confidence 334455566677888888888764222 222210 0 01223445553 21 2333 3333
Q ss_pred HHHCCCccCC---C---CC--C-------------C-CCEEEEeccCCCCHHhhchHHHHHHHHHH
Q 001990 927 LMDYGFHGPT---M---SW--P-------------V-PGTLMIEPTESESKVCHNREDLFFQILLS 970 (985)
Q Consensus 927 L~e~Gi~~~~---~---~~--p-------------v-~~~lris~t~~~t~eeId~~~~~i~aL~~ 970 (985)
|...++.++. + .. | + ++.||+|++..+++++|+ .|.++|++
T Consensus 351 l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~---~l~~al~~ 413 (415)
T 2fq6_A 351 FSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIA---DLDAGFAR 413 (415)
T ss_dssp CSSCEECSCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHH---HHHHHHHT
T ss_pred CCcCeEeccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHH---HHHHHHHh
Confidence 3222332220 0 01 1 1 378999999999999999 88888864
No 232
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.74 E-value=8.6e-17 Score=186.67 Aligned_cols=303 Identities=11% Similarity=0.086 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHhCCCccceecChHHH-HHHHHHHHHHHHHHh-cCC------CCCCEEEEcCCCCCCcHHHHHhcCcEEE
Q 001990 634 FNNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKA-RGD------HHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~~~~~~sGa~-g~~a~l~air~~~~~-~g~------~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~ 705 (985)
..++++.++++++++...+.+++|++ +.. ..++++.+... .|. .++++|+++++.|..+...++..|++++
T Consensus 80 ~~~lr~~ia~~~~~~~~~i~~t~G~~~al~-~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~ 158 (427)
T 3ppl_A 80 IVDIRQIWADLLGVPVEQVLAGDASSLNIM-FDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMI 158 (427)
T ss_dssp CHHHHHHHHHHHTSCGGGEEECSSCHHHHH-HHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEE
T ss_pred cHHHHHHHHHHhCCCcceEEEeCCcHHHHH-HHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEE
Confidence 34688889999998876655555543 331 01233332210 100 0268999998877666667788999999
Q ss_pred EEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEE-cC-CCccccccCHH---HHHHHH-HHcCCEEEEEcccccc-ccCCCC
Q 001990 706 SVGTDAKGNINIEELRKAAEANRDNLSTLMVT-YP-STHGVYEEGID---EICKII-HDNGGQVYMDGANMNA-QVGLTS 778 (985)
Q Consensus 706 ~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~-~p-n~~G~i~~di~---eI~~la-~~~g~lliVD~a~~~~-~~g~~~ 778 (985)
.+|++++| +|+++|+++++ .+++++|+++ +| |++|.+. +.+ +|+++| +++|+++|+|+++... ..+-..
T Consensus 159 ~v~~~~~g-~d~~~l~~~l~--~~~~~~v~~~p~~~NPtG~~~-~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~ 234 (427)
T 3ppl_A 159 SVPMNEDG-PDMDAVEELVK--NPQVKGMWVVPVFSNPTGFTV-TEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFP 234 (427)
T ss_dssp EEEEETTE-ECHHHHHHHTT--STTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCC
T ss_pred EeCCCCCC-CCHHHHHHHHh--cCCCeEEEECCCCCCCCCccC-CHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCC
Confidence 99998776 99999999994 2688888865 56 5799987 454 889998 9999999999998531 111010
Q ss_pred -----------CCcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccc
Q 001990 779 -----------PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 779 -----------~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~ 847 (985)
++..+.++++.|++|++ . +|.++|++++++++.+.+...... . ..+++..
T Consensus 235 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~----~G~r~G~~~~~~~l~~~~~~~~~~------------~--~~~~~~~ 295 (427)
T 3ppl_A 235 EVIDIVGLGEAAGNPNRFWAFTSTSKIT-L----AGAGVSFFLTSAENRKWYTGHAGI------------R--GIGPNKV 295 (427)
T ss_dssp CCCCHHHHHHHTTCTTSEEEEEESTTTS-C----TTSSCEEEECCHHHHHHHHHHHHH------------H--CSCCCHH
T ss_pred CccchhhhhhccCCCCcEEEEechhhcc-C----cCccEEEEEcCHHHHHHHHHHhhc------------c--cCCCCHH
Confidence 01335678889999983 3 367899999988776554211000 0 0111111
Q ss_pred hhhhHHHHHHHHHHHhc--hhhHHHHHHHHHHHHHHHHHHHhcc---C-CeeEcCCCCceeEEEEEEecCccccCCCCHH
Q 001990 848 GSALILPISYTYIAMMG--SKGLTEASKIAILNANYMAKRLEKH---Y-PILFRGVNGTVAHEFIVDLRGLKNTAGIEPE 921 (985)
Q Consensus 848 g~~~~~~~A~a~l~~lg--~~gl~~~~~~~~~~a~~l~~~L~~~---~-~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~ 921 (985)
++ .++..++...+ .+.+.+..+...++.+++.+.|.+. . .+.+..+.+..+ +.++++ +.+..
T Consensus 296 ~q----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~--~~~~~~------~~~~~ 363 (427)
T 3ppl_A 296 NQ----LAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYF--ISLDVV------PGTAS 363 (427)
T ss_dssp HH----HHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSC--EEEECS------TTCHH
T ss_pred HH----HHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEE--EEEECC------cchHH
Confidence 11 11222222111 1223333444455556666666541 1 122222222222 345654 23678
Q ss_pred HHHHHHHHCCCccCC--CCCC-----CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHH
Q 001990 922 DVAKRLMDYGFHGPT--MSWP-----VPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 922 ~l~~~L~e~Gi~~~~--~~~p-----v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
++.+.|.++||.+.. ..++ .++.+|++++.. +++||+ ++++.|+++++++.
T Consensus 364 ~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~---~~~~~l~~~l~~~~ 421 (427)
T 3ppl_A 364 RVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP-PVEELE---VAMDGVATCVLLAA 421 (427)
T ss_dssp HHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS-CHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC-CHHHHH---HHHHHHHHHHHHHH
Confidence 899999999998743 1122 358999999655 899999 99999999887654
No 233
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.74 E-value=1.8e-16 Score=181.40 Aligned_cols=300 Identities=12% Similarity=0.046 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHHhC--CCccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeC
Q 001990 633 MFNNLGEWLCTITG--FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT 709 (985)
Q Consensus 633 ~~~el~~~la~l~G--~~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~ 709 (985)
+.+.+.+++.+.+| .+... ++.++|++++..++.++. .++++|+++.+.|..+...++..|.+++.+|.
T Consensus 69 lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~--------~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~ 140 (390)
T 1d2f_A 69 FLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS--------ETGEGVVIHTPAYDAFYKAIEGNQRTVMPVAL 140 (390)
T ss_dssp HHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS--------CTTCEEEEEESCCHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhc--------CCCCEEEEcCCCcHHHHHHHHHCCCEEEEeec
Confidence 34445555555567 44444 455556655543333221 36789999887666666667788999999998
Q ss_pred CCCC---CCCHHHHHHHHHhcCCCeEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEcccccccc-C--CCCCC
Q 001990 710 DAKG---NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQV-G--LTSPG 780 (985)
Q Consensus 710 ~~~g---~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~--di~eI~~la~~~g~lliVD~a~~~~~~-g--~~~~g 780 (985)
+.++ .+|+++|++++++ .++++|++++| |++|.+.+ ++++|+++|+++|+++|+|++|..... + +....
T Consensus 141 ~~~~~~~~~d~~~l~~~l~~--~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~ 218 (390)
T 1d2f_A 141 EKQADGWFCDMGKLEAVLAK--PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWS 218 (390)
T ss_dssp EECSSSEECCHHHHHHHHTS--TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGG
T ss_pred ccCCCccccCHHHHHHHhcc--CCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHH
Confidence 6542 5899999999972 37899999998 46898862 389999999999999999999853211 1 11111
Q ss_pred cCC--C-cEEEeCCcccccccCCCCCCcceeeeec-ccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHH
Q 001990 781 YIG--A-DVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPIS 856 (985)
Q Consensus 781 ~~g--~-Di~~~s~hKtl~~p~g~GGPg~G~l~~~-~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A 856 (985)
.+. . |. +.|+||+|+. +|.++|+++++ +++.+.+.....+. ...+ + . +.....++
T Consensus 219 ~~~~~~~d~-~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~~~~~--------~~~~--~--~----~~~~~~a~ 277 (390)
T 1d2f_A 219 NVARGDWAL-LTSGSKSFNI----PALTGAYGIIENSSSRDAYLSALKGR--------DGLS--S--P----SVLALTAH 277 (390)
T ss_dssp GTCCSSEEE-EECSHHHHTC----GGGCCEEEEECSHHHHHHHHHHHHTT--------SCCC--S--C----CHHHHHHH
T ss_pred HcchhhHhh-ccCccHhhcc----cChhheEEEECCHHHHHHHHHHHhhh--------cccC--C--C----CHHHHHHH
Confidence 122 2 67 8899999953 35678999985 55554332110000 0001 1 1 11122222
Q ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHH-HCCCcc
Q 001990 857 YTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYGFHG 934 (985)
Q Consensus 857 ~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~-e~Gi~~ 934 (985)
.+.+.. +.+.+.+..++..++++++.+.|++ ...+....+.+..+ +.++++. .+.+..++.+.|. ++||.+
T Consensus 278 ~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~l~~~l~~~~gi~v 350 (390)
T 1d2f_A 278 IAAYQQ-GAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYL--AWLDLRP----LNIDDNALQKALIEQEKVAI 350 (390)
T ss_dssp HHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSE--EEEECGG----GCCCHHHHHHHHHHTTCEEC
T ss_pred HHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecCCccEE--EEEEccc----cCCCHHHHHHHHHHHcCEEe
Confidence 333432 3445666667777888899999976 22222222222221 2355541 1257788999998 589987
Q ss_pred CCCC-CC--CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 935 PTMS-WP--VPGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 935 ~~~~-~p--v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
.... +. .++.+|++++. ++++++ ++++.|++++++.
T Consensus 351 ~~g~~f~~~~~~~~Ris~~~--~~~~l~---~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 351 MPGYTYGEEGRGFVRLNAGC--PRSKLE---KGVAGLINAIRAV 389 (390)
T ss_dssp EEGGGGCGGGTTEEEEECCS--CHHHHH---HHHHHHHHHHHHH
T ss_pred eCccccCCCCCCeEEEEecC--CHHHHH---HHHHHHHHHHHhh
Confidence 4321 21 24789999986 578898 9999998887653
No 234
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.74 E-value=3.9e-16 Score=183.15 Aligned_cols=302 Identities=16% Similarity=0.134 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHHhCCCc-cceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCCCcHHHHHhcC--------
Q 001990 632 EMFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG-------- 701 (985)
Q Consensus 632 ~~~~el~~~la~l~G~~~-~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv-~~~~Hg~~~~~~~~~G-------- 701 (985)
+...+++++++++++.+. ..++.++|++++++++.+++.|...+|..++++||+ ...+||.........|
T Consensus 94 ~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~ 173 (459)
T 4a6r_A 94 PAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQG 173 (459)
T ss_dssp HHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhcccc
Confidence 356688999999987643 346778999999888888887766666545677876 5567877655443322
Q ss_pred ----cEEEEEeCCC-----CCCCC--------HHHHHHHHHhcC-CCeEEEEEEcC-CCccccccC----HHHHHHHHHH
Q 001990 702 ----MKIVSVGTDA-----KGNIN--------IEELRKAAEANR-DNLSTLMVTYP-STHGVYEEG----IDEICKIIHD 758 (985)
Q Consensus 702 ----~~v~~v~~~~-----~g~iD--------le~L~~~i~~~~-~~t~~Vvi~~p-n~~G~i~~d----i~eI~~la~~ 758 (985)
..+..++... +. .| +++|++++++.. +++++|+++.+ ++.|.+. + +++|+++|++
T Consensus 174 ~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~-~~~~~l~~l~~l~~~ 251 (459)
T 4a6r_A 174 DLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIV-PPATYWPEIERICRK 251 (459)
T ss_dssp CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBC-CCTTHHHHHHHHHHH
T ss_pred CCCCCCCEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCccc-CCHHHHHHHHHHHHH
Confidence 1234444321 11 35 889999997543 35566665443 3567665 4 9999999999
Q ss_pred cCCEEEEEccccccccCCCCCCc--------CCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCC--C-ccccC
Q 001990 759 NGGQVYMDGANMNAQVGLTSPGY--------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPS--H-PVVST 827 (985)
Q Consensus 759 ~g~lliVD~a~~~~~~g~~~~g~--------~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg--~-~~g~~ 827 (985)
||++||+|++|. ++.+.|. ..+|+++++ |+++ +||.++|++++++++++.+.. . ..+
T Consensus 252 ~~~llI~DEv~~----g~gr~G~~~~~~~~~~~pdi~t~s--K~l~----gg~~~lg~v~~~~~i~~~~~~~~~~~~~-- 319 (459)
T 4a6r_A 252 YDVLLVADEVIC----GFGRTGEWFGHQHFGFQPDLFTAA--KGLS----SGYLPIGAVFVGKRVAEGLIAGGDFNHG-- 319 (459)
T ss_dssp TTCEEEEECTTT----TTTTTSSSSHHHHHTCCCSEEEEC--GGGG----TTSSCCEEEEECHHHHHHHHHHCTTHHH--
T ss_pred cCCEEEEecccc----CCCcccccchHhhcCCCCCeeehh--hhhc----CCCCCccceeeCHHHHHHhhcCCCcccC--
Confidence 999999999874 2222221 236888764 8763 455789999999887665421 1 000
Q ss_pred CCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHH-HHHHHHHHHH-hc--cCC-ee-EcCCCCce
Q 001990 828 GGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAI-LNANYMAKRL-EK--HYP-IL-FRGVNGTV 901 (985)
Q Consensus 828 ~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~-~~a~~l~~~L-~~--~~~-i~-~~g~~~~~ 901 (985)
+++.+++..++++.+.+..+..+.+. ++.. ++.+++++.| +. .+. +. ..+. +.+
T Consensus 320 ----------------~t~~~~~~~~aaa~aal~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-g~~ 379 (459)
T 4a6r_A 320 ----------------FTYSGHPVCAAVAHANVAALRDEGIV---QRVKDDIGPYMQKRWRETFSRFEHVDDVRGV-GMV 379 (459)
T ss_dssp ----------------HHHCSCHHHHHHHHHHHHHHHHTCHH---HHHHHTHHHHHHHHHHHHHTTCTTEEEEEEE-TTE
T ss_pred ----------------CCCCCCHHHHHHHHHHHHHHhcchHH---HHHHHHHHHHHHHHHHHHHhcCCCeEEEEEE-EEE
Confidence 01112344455566666665444443 3444 5566666666 32 122 11 1111 111
Q ss_pred eEEEEEEecCcccc------CCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 902 AHEFIVDLRGLKNT------AGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 902 ~~~~vv~~~~~~~~------~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
+.+++...... ......++.+.|.++|+.+... .+.+||+|+..+|++|++ +++++|+++++++
T Consensus 380 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----g~~iRi~~~~~~t~e~i~---~~l~~l~~~l~~~ 449 (459)
T 4a6r_A 380 ---QAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRAC----GDHIVSAPPLVMTRAEVD---EMLAVAERCLEEF 449 (459)
T ss_dssp ---EEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEE----TTEEEECCCTTCCHHHHH---HHHHHHHHHHHHH
T ss_pred ---EEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecC----CCEEEEECCCCCCHHHHH---HHHHHHHHHHHHH
Confidence 23333210000 0001567889999999987533 378999999999999999 9999999998876
Q ss_pred HH
Q 001990 976 TF 977 (985)
Q Consensus 976 ~~ 977 (985)
.+
T Consensus 450 ~~ 451 (459)
T 4a6r_A 450 EQ 451 (459)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 235
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.74 E-value=1.9e-17 Score=187.02 Aligned_cols=304 Identities=11% Similarity=0.056 Sum_probs=188.5
Q ss_pred hcHHHHHHHHHHHHHHHhCCCc-cc-eecChH-HHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEE
Q 001990 628 QGYQEMFNNLGEWLCTITGFDS-FS-LQPNAG-AAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~~~-~~-~~~~sG-a~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v 704 (985)
++..+...++++++++++|.+. .. ++.+++ ++++.+++.++. .+| .+++.|+++...|.. ...++..| ++
T Consensus 44 ~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~----~~~-~~g~~vi~~~~~~~~-~~~~~~~g-~~ 116 (360)
T 1w23_A 44 QSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLL----TKG-TIGNYVLTGSWSEKA-LKEAKLLG-ET 116 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC----CTT-CEEEEEECSHHHHHH-HHHHHTTS-EE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhc----CCC-CcccEEEecchhHHH-HHHHHHhC-Ce
Confidence 4566778899999999999863 23 334333 666544433321 122 234556665543322 12356679 99
Q ss_pred EEEeCCC-CCCCCHHHHHH-HHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCc
Q 001990 705 VSVGTDA-KGNINIEELRK-AAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGY 781 (985)
Q Consensus 705 ~~v~~~~-~g~iDle~L~~-~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~ 781 (985)
+.++.++ +|.+|+++|++ +++ ++|++|++++| |++|.+. | +|. +++|+++++|++|..+...+ ....
T Consensus 117 ~~v~~~~~~~~~d~~~l~~~~i~---~~~k~v~~~~~~nptG~~~-~--~i~---~~~~~~li~D~a~~~~~~~~-~~~~ 186 (360)
T 1w23_A 117 HIAASTKANSYQSIPDFSEFQLN---ENDAYLHITSNNTIYGTQY-Q--NFP---EINHAPLIADMSSDILSRPL-KVNQ 186 (360)
T ss_dssp EEEEECGGGTSCSCCCGGGCCCC---TTEEEEEEESEETTTTEEC-S--SCC---CCCSSCEEEECTTTTTSSCC-CGGG
T ss_pred EEeecccccCcCCccchHhhccC---CCCCEEEEeCCCCCcceec-c--ccc---ccCCceEEEechhhcCCCCc-Cccc
Confidence 9999875 67789999988 776 78999999988 6799986 3 333 37999999999986443221 1222
Q ss_pred CCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCC---CCCCCCCCCCcccccchhhhHHHHHHH
Q 001990 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIP---APEKSQPLGTIAAAPWGSALILPISYT 858 (985)
Q Consensus 782 ~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~---~~~~~~~t~~i~s~~~g~~~~~~~A~a 858 (985)
.|++++++||+|+ ++|+|++++++++++.+.... ++..+.. ..+...++++. ..+.++.+
T Consensus 187 --~di~~~s~sK~~~------~~G~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 249 (360)
T 1w23_A 187 --FGMIYAGAQKNLG------PSGVTVVIVKKDLLNTKVEQV-PTMLQYATHIKSDSLYNTPPT--------FSIYMLRN 249 (360)
T ss_dssp --CSEEEEETTTTTS------CTTCEEEEEEHHHHCSCCTTC-CGGGCHHHHHHTTTCSSCCCH--------HHHHHHHH
T ss_pred --CCEEEEEcccccC------CCCcEEEEEcHHHHhhcccCC-cchhhhhhhhhccCCCCCCCH--------HHHHHHHH
Confidence 3899999999884 346899999987766553321 1100000 00001111111 11222334
Q ss_pred HHHHhchh-hHHHHHHHHHHHHHHHHHHHhccCCe-eEc-CCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccC
Q 001990 859 YIAMMGSK-GLTEASKIAILNANYMAKRLEKHYPI-LFR-GVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGP 935 (985)
Q Consensus 859 ~l~~lg~~-gl~~~~~~~~~~a~~l~~~L~~~~~i-~~~-g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~ 935 (985)
.+..+..+ ++.+..++..++++++.+.|++...+ ... .+.......+.+.++. +.+..++.+.|.++||.+.
T Consensus 250 al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~gi~~~ 324 (360)
T 1w23_A 250 VLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRN-----EELNQQFLAKAKEQGFVGL 324 (360)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSS-----HHHHHHHHHHHHHTTEESC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCcEEEEEcCC-----CccHHHHHHHHHHCCeeee
Confidence 44444444 67777788889999999999872112 111 1111111124455431 1235678888999999874
Q ss_pred CCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 936 TMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 936 ~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
... +.++.+|++++..+|++|++ +++++|++++++
T Consensus 325 ~~~-~~~~~iRis~~~~~~~~~i~---~~~~~l~~~~~~ 359 (360)
T 1w23_A 325 NGH-RSVGGCRASIYNAVPIDACI---ALRELMIQFKEN 359 (360)
T ss_dssp BCC-TTTCSEEEECCTTSCHHHHH---HHHHHHHHHHHH
T ss_pred cCC-CCCCeEEEEecCCCCHHHHH---HHHHHHHHHHhh
Confidence 322 12478999999999999999 999999987653
No 236
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.74 E-value=6.8e-17 Score=185.43 Aligned_cols=164 Identities=16% Similarity=0.209 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHH----HHhcCcEEEEEe
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVG 708 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~----~~~~G~~v~~v~ 708 (985)
...++++++++++|.+. .+.+++|++++..++.++ ..++++||++...|+.+... ++..|++++.++
T Consensus 60 ~~~~l~~~la~~~g~~~-~i~~~sG~~ai~~~~~~~--------~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 130 (389)
T 3acz_A 60 TVEQFEEMVCSIEGAAG-SAAFGSGMGAISSSTLAF--------LQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLID 130 (389)
T ss_dssp HHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHTTT--------CCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHhCCCe-EEEeCCHHHHHHHHHHHH--------hCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEEC
Confidence 46689999999999884 466677876664433322 13678999998877654443 467899999998
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCCCcEE
Q 001990 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 709 ~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g~Di~ 787 (985)
. .|+++++++++ +++++|++++| |++|.+. |+++|+++|+++|+++++|+++..+.. ..+..+++|++
T Consensus 131 ~-----~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~-~l~~i~~~~~~~~~~livD~~~~~~~~--~~~~~~~~di~ 199 (389)
T 3acz_A 131 T-----SDVEKVKAAWK---PNTKMVYLESPANPTCKVS-DIKGIAVVCHERGARLVVDATFTSPCF--LKPLELGADIA 199 (389)
T ss_dssp T-----TCHHHHHHTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHTCEEEEECTTTCTTT--CCGGGTTCSEE
T ss_pred C-----CCHHHHHHhcC---CCCeEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCccccc--cCccccCCeEE
Confidence 7 38999999997 78999999998 5799998 899999999999999999999864332 23445789999
Q ss_pred EeCCcccccccCCCCCCcceeeeecc-cccCcC
Q 001990 788 HLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFL 819 (985)
Q Consensus 788 ~~s~hKtl~~p~g~GGPg~G~l~~~~-~l~~~l 819 (985)
+.|+||+|+.| |++-+|++++++ ++.+.+
T Consensus 200 ~~S~sK~~~~~---~~~~~G~v~~~~~~~~~~l 229 (389)
T 3acz_A 200 LHSVSKYINGH---GDVIGGVSSAKTAEDIATI 229 (389)
T ss_dssp EEETTTTTTCS---SCCCCEEEEESSHHHHHHH
T ss_pred EECChhhccCC---CCceeEEEEECcHHHHHHH
Confidence 99999998532 111148999988 766544
No 237
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.73 E-value=4.2e-17 Score=201.44 Aligned_cols=280 Identities=10% Similarity=0.026 Sum_probs=195.9
Q ss_pred HHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC---
Q 001990 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD--- 287 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~--- 287 (985)
..+.+.|+.+++++|.+.+ +.+++|+|++..++++++. . +||+||+++.+|+++...++. .|+++++++
T Consensus 205 g~v~~~ee~la~l~G~d~~-i~~~~Gtt~a~~~~i~al~-~--~GD~Vlv~~~~h~s~~~~~~~----~G~~~v~v~~~~ 276 (755)
T 2vyc_A 205 GAFGESEKYAARVFGADRS-WSVVVGTSGSNRTIMQACM-T--DNDVVVVDRNCHKSIEQGLML----TGAKPVYMVPSR 276 (755)
T ss_dssp HHHHHHHHHHHHHHTCSEE-EEESSHHHHHHHHHHHHHC-C--TTCEEEEESSCCHHHHHHHHH----HCCEEEEECCCB
T ss_pred cHHHHHHHHHHHHhCCCce-EEECCcHHHHHHHHHHHhc-C--CCCEEEECCCchHHHHHHHHH----cCCEEEEEeCCC
Confidence 4577899999999999853 4456666777787777653 3 899999999999999988754 377777663
Q ss_pred ---------------chhhhc-cC--CCEe--------EEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEeccccccC-
Q 001990 288 ---------------LKDIDY-KS--GDVC--------GVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTI- 340 (985)
Q Consensus 288 ---------------~~~l~~-l~--~~t~--------~V~v~~pn~~G~i~dl~~I~~~a~~~galliV~a~~~alg~- 340 (985)
++++++ +. ++++ +|++++||++|.+.|+++|+++||++|++++||. .++.+.
T Consensus 277 ~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~pn~~G~v~dl~~I~~ia~~~~~~livDe-A~~~~~~ 355 (755)
T 2vyc_A 277 NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDE-AWYGYAR 355 (755)
T ss_dssp CTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESSCTTSEEECHHHHHHHHTTTCSEEEEEC-TTCTTGG
T ss_pred CccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECCCCCceecCHHHHHHHHHHcCCEEEEEC-cCchhcc
Confidence 334544 42 3454 8999999999999999999999999999999952 232111
Q ss_pred C------CCCCccc--ceE------EEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecc
Q 001990 341 L------KPPGELG--ADI------VVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQ 405 (985)
Q Consensus 341 l------~~p~~~G--aDi------~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~ 405 (985)
. ..+. +| +|+ +++|+ |+|++| +++|+++++++. +.+ + ...+
T Consensus 356 ~~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L~g~-----~~g~~i~~~~~~-~~i---------~---~~~~----- 411 (755)
T 2vyc_A 356 FNPIYADHYAM-RGEPGDHNGPTVFATHSTHKLLNAL-----SQASYIHVREGR-GAI---------N---FSRF----- 411 (755)
T ss_dssp GCGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSSSCC-----TTCEEEEEECCB-TCC---------C---HHHH-----
T ss_pred cCcccCCcchh-cCCcCCccCCCeEEEECccccccCc-----CCeeeeeecCcc-ccc---------C---HHHH-----
Confidence 1 1222 67 887 88888 766543 236788887541 001 0 0000
Q ss_pred cccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCC---------EEEcCCC---
Q 001990 406 TREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGT---------VEVQGLP--- 473 (985)
Q Consensus 406 tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~---------~~~~~~~--- 473 (985)
+....+.+.+|+|+ ..+.++.+++ .++..+|.+++.++..+++++++++|+++++ ++++.+.
T Consensus 412 -~~~~~~~~s~sp~~---~~iaal~aA~--~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~~~~~~~~~ 485 (755)
T 2vyc_A 412 -NQAYMMHATTSPLY---AICASNDVAV--SMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVT 485 (755)
T ss_dssp -HHHHHHTSCSSCCH---HHHHHHHHHH--HHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEESSCSEEE
T ss_pred -HHHHHHhCCCCHHH---HHHHHHHHHH--HHHHhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceeeccCchhcc
Confidence 00011123344454 4455555554 5566665678889999999999999998765 6665321
Q ss_pred ----------------------------------------C----cc--eEEEecC-----------C--HHHHHHHHHH
Q 001990 474 ----------------------------------------F----FD--TVKVKCA-----------D--AHAIASAAYK 494 (985)
Q Consensus 474 ----------------------------------------~----~~--~~~i~~~-----------~--~~~l~~~L~~ 494 (985)
. ++ .++|.++ + +.++.+.|.+
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~ 565 (755)
T 2vyc_A 486 DPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGR 565 (755)
T ss_dssp CTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHT
T ss_pred ccccccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHH
Confidence 0 11 3566665 2 4899999999
Q ss_pred cCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 495 IEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 495 ~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+||.++....+.+|+++|..+|++++++|+++|..
T Consensus 566 ~gI~~e~~~~~~v~~~~~~g~t~~~~~~l~~al~~ 600 (755)
T 2vyc_A 566 HGIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCS 600 (755)
T ss_dssp TTCCCSEECSSEEEEECCTTCCTTTTHHHHHHHHH
T ss_pred CCCEEeecCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999887789999999999999999999999974
No 238
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.73 E-value=1.1e-15 Score=178.64 Aligned_cols=312 Identities=12% Similarity=0.065 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHHhCCCc-cceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCCCcHHHHHhcC--------
Q 001990 632 EMFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPATAAMCG-------- 701 (985)
Q Consensus 632 ~~~~el~~~la~l~G~~~-~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~-~~Hg~~~~~~~~~G-------- 701 (985)
+...+++++++++++.+. ..++++||++++++++.+++.++...|..++++||+.+ .+||.........|
T Consensus 87 ~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~ 166 (448)
T 3dod_A 87 VPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVY 166 (448)
T ss_dssp HHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccc
Confidence 345678899999986543 34778899999988888888765445533468888755 55665433322222
Q ss_pred ----cEEEEEeCCCCCC-----------CCHHHHHHHHHhcCCCeEEEEEEcC--CCccccccC---HHHHHHHHHHcCC
Q 001990 702 ----MKIVSVGTDAKGN-----------INIEELRKAAEANRDNLSTLMVTYP--STHGVYEEG---IDEICKIIHDNGG 761 (985)
Q Consensus 702 ----~~v~~v~~~~~g~-----------iDle~L~~~i~~~~~~t~~Vvi~~p--n~~G~i~~d---i~eI~~la~~~g~ 761 (985)
..+..+|.+...+ .|+++|+++++++.+++++|+++.+ ++.|.+.++ +++|+++|++||+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~ 246 (448)
T 3dod_A 167 GPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDV 246 (448)
T ss_dssp ------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTC
T ss_pred cCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCC
Confidence 2344555543222 2589999999754457777777654 456766522 9999999999999
Q ss_pred EEEEEccccccccCCCCC---C--cCCCcEEEeCCcccccccCCCCC-CcceeeeecccccCcCCCCccccCCCCCCCCC
Q 001990 762 QVYMDGANMNAQVGLTSP---G--YIGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEK 835 (985)
Q Consensus 762 lliVD~a~~~~~~g~~~~---g--~~g~Di~~~s~hKtl~~p~g~GG-Pg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~ 835 (985)
++|+|++|. +++-.... . ...+|+++++ |+|+ +| .++|++++++++++.+....... +..
T Consensus 247 ~lI~DEv~~-g~g~~g~~~a~~~~~~~~di~t~s--K~l~-----~G~~~ig~v~~~~~~~~~~~~~~~~~------~~~ 312 (448)
T 3dod_A 247 LMIVDEVAT-GFGRTGKMFACEHENVQPDLMAAG--KGIT-----GGYLPIAVTFATEDIYKAFYDDYENL------KTF 312 (448)
T ss_dssp EEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEEC--GGGG-----TTSSCCEEEEEEHHHHHTTCSCGGGC------CCC
T ss_pred EEEEecccc-CCCcccchhhhhhcCCCCCEEEec--cccc-----CCcCceEEEEECHHHHHHhhhccccC------Ccc
Confidence 999999884 22111111 1 1236887664 8874 35 37899999988876654210000 000
Q ss_pred CCCCCCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc--cCCeeE--cCCCCceeEEEEEEecC
Q 001990 836 SQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILF--RGVNGTVAHEFIVDLRG 911 (985)
Q Consensus 836 ~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~--~~~i~~--~g~~~~~~~~~vv~~~~ 911 (985)
..+ .+ +.+++..++++.+.+..+..+++ .++..++.+++++.|++ .+.... .+ .+.+ +.+.+..
T Consensus 313 ~~~-~t----~~~~~~~~aaa~aal~~~~~~~~---~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~g~~---~~~~~~~ 380 (448)
T 3dod_A 313 FHG-HS----YTGNQLGCAVALENLALFESENI---VEQVAEKSKKLHFLLQDLHALPHVGDIRQ-LGFM---CGAELVR 380 (448)
T ss_dssp CCC-CT----TTTCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHTTSTTEEEEEE-ETTE---EEEEECS
T ss_pred ccc-CC----CCcCHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHHHhcCCCeEEEEe-eeEE---EEEEEcc
Confidence 000 11 11234445555666665544443 34455666677777665 222111 11 1122 2233321
Q ss_pred ccccCCC-------CHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHHH
Q 001990 912 LKNTAGI-------EPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTTF 977 (985)
Q Consensus 912 ~~~~~g~-------~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~~ 977 (985)
.. .... ...++++.|.++|+.+... .+.||++|+..+|++||+ +++++|+++++++..
T Consensus 381 ~~-~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~----~~~iRi~~~~~~t~e~i~---~~l~~l~~~l~~~~~ 445 (448)
T 3dod_A 381 SK-ETKEPYPADRRIGYKVSLKMRELGMLTRPL----GDVIAFLPPLASTAEELS---EMVAIMKQAIHEVTS 445 (448)
T ss_dssp BT-TTTBCCCGGGCHHHHHHHHHHHTTEECCEE----TTEEEECCCTTCCHHHHH---HHHHHHHHHHHHHHT
T ss_pred Cc-ccccccchhhHHHHHHHHHHHHCCcEEecc----CCEEEEECCCCCCHHHHH---HHHHHHHHHHHHHhc
Confidence 00 0000 0467899999999987532 478999999999999999 999999999887653
No 239
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.73 E-value=4.4e-17 Score=190.04 Aligned_cols=307 Identities=13% Similarity=0.108 Sum_probs=183.0
Q ss_pred hcHHHHHHHHHHHHHHHhCC--Cccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCC--------------EEEEc-CCC
Q 001990 628 QGYQEMFNNLGEWLCTITGF--DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRN--------------VCIIP-VSA 689 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~--~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~--------------~Vlv~-~~~ 689 (985)
+|..++.+++.+++.+.+|. +... +++++|++++..++.++. .+++ +||++ .+.
T Consensus 83 ~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~--------~~gd~~~~~~~~~~g~~~~vi~~~~p~ 154 (444)
T 3if2_A 83 QGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFG--------GAFVNEHSQDKESKSVDKSILLPLTPE 154 (444)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSS--------EEEECC-------CEEEEEEEESSSSC
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHh--------CCCccccccccccccccceEEEeCCCC
Confidence 45555555555555555554 4444 555666655543333221 1333 67775 554
Q ss_pred CCCcHHH------HHhcCcEEEEEeCCC-CC----CCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccC---HHHHHH
Q 001990 690 HGTNPAT------AAMCGMKIVSVGTDA-KG----NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICK 754 (985)
Q Consensus 690 Hg~~~~~------~~~~G~~v~~v~~~~-~g----~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~d---i~eI~~ 754 (985)
|..+... ....|.+++.+++++ +| .+|+++|++++.+..+++++|++++| |++|.+. + +++|++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~-~~~~l~~i~~ 233 (444)
T 3if2_A 155 YIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVL-TDEEMAHLAE 233 (444)
T ss_dssp CGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCC-CHHHHHHHHH
T ss_pred ccchhhcccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcC-CHHHHHHHHH
Confidence 5444332 234678888888875 33 78999999984322278999999999 5799987 5 899999
Q ss_pred HHHHcCCEEEEEccccccccCCC----CCCcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCC
Q 001990 755 IIHDNGGQVYMDGANMNAQVGLT----SPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI 830 (985)
Q Consensus 755 la~~~g~lliVD~a~~~~~~g~~----~~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~ 830 (985)
+|+++|+++|+|++|.....+.. .+...+.++++.|+||+ +. +|.++|++++++++.+.+......
T Consensus 234 ~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~----~G~r~G~~~~~~~l~~~~~~~~~~----- 303 (444)
T 3if2_A 234 IAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-GL----PGMRTGIIVADAKVIEAVSAMNAV----- 303 (444)
T ss_dssp HHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-TC----GGGCCEEEECCHHHHHHHHHHHHH-----
T ss_pred HHHHCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhc-cC----CCCceEEEEECHHHHHHHHHHHHh-----
Confidence 99999999999999853221111 12234678889999996 32 467899999888776554211000
Q ss_pred CCCCCCCCCCCcccccchhhhHHHHHHHHHHHhchh-hHHH-HHHHHHHHHHHHHHHHhcc---CCeeEcCCCCceeEEE
Q 001990 831 PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK-GLTE-ASKIAILNANYMAKRLEKH---YPILFRGVNGTVAHEF 905 (985)
Q Consensus 831 ~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~-gl~~-~~~~~~~~a~~l~~~L~~~---~~i~~~g~~~~~~~~~ 905 (985)
. ..+++. ....++..++...... .+.+ ..+...++.+++.+.|.+. +.+....+.+.. .+
T Consensus 304 -------~--~~~~~~----~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~--~~ 368 (444)
T 3if2_A 304 -------V--NLAPTR----FGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAI--FL 368 (444)
T ss_dssp -------H--HSSCCC----HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSS--EE
T ss_pred -------c--cCCCCh----HHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccE--EE
Confidence 0 001111 1111222222211101 1111 2334455566777777652 223332222222 23
Q ss_pred EEEecCccccCCCCHHHHHHHHHHCCCccCCCC-C-C---------CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 906 IVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-W-P---------VPGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 906 vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~-~-p---------v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
.++++. .+.+..++.+.|.++||.+.... + + ..+.+|++++. +++||+ ++++.|++++++
T Consensus 369 ~~~~~~----~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~---~~l~~l~~~~~~ 439 (444)
T 3if2_A 369 WLWFKD----LPISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLI---DGIKVIGEVVRE 439 (444)
T ss_dssp EEEETT----CSSCHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHH---HHHHHHHHHHHH
T ss_pred EEEcCC----CCCCHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--CHHHHH---HHHHHHHHHHHH
Confidence 455541 14678899999999999874321 1 1 12689999986 999999 999999999887
Q ss_pred HHH
Q 001990 975 TTF 977 (985)
Q Consensus 975 ~~~ 977 (985)
+..
T Consensus 440 ~~~ 442 (444)
T 3if2_A 440 LYD 442 (444)
T ss_dssp HHT
T ss_pred HHc
Confidence 653
No 240
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.73 E-value=2.4e-16 Score=180.95 Aligned_cols=342 Identities=15% Similarity=0.137 Sum_probs=212.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCccc-eecCCCCCC-CCCcHHHHHHH-------HhCCccccccCCChhhHhhHHH
Q 001990 140 KFSKFDEGLTESQMIEHMQKLASMNKVYK-SFIGMGYYN-THVPPVILRNI-------MENPAWYTQYTPYQAEIAQGRL 210 (985)
Q Consensus 140 ~lp~~~~~~se~e~~~~~~~~~~~n~~~~-~~lG~g~~~-~~~p~~v~~~i-------~~~~~~~t~~~py~~e~sqg~l 210 (985)
.|| .+++||.++...|.+++.++..+. .-.|.|--. ...-+.+...- ....+|+++ .| ...-+.+..
T Consensus 22 ~~p--~~g~~~~~i~~~l~~~~~~d~~~~~~~~~~geregrv~~~~~~~r~~g~~hg~~~~~d~l~~-~~-~~~~~~~~~ 97 (450)
T 3bc8_A 22 KCP--EDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAV-QP-KAAGSSLLN 97 (450)
T ss_dssp CCC--SSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCBCC--------CC-SBHHHHHHH
T ss_pred cCC--ccCCCHHHHHHHHHHHhhCCCCccccccccCcccceEecccccCCccceecchhHHHHHHHh-Cc-cccCCcHHH
Confidence 577 689999999999999998764321 112333211 12222221110 001134444 33 222344445
Q ss_pred HHHHHHHHHHHHhhCCCCcce-eeccchHHHHHHHHHHh-hhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001990 211 ESLLNFQTMIADLTGLPMSNA-SLLDEGTAAAEAMAMCN-NIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~-sl~~~~ta~~ea~~~a~-~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~ 288 (985)
+.-.++..++.+++|++.... .+++|+|+++.++.|+. +-.+.++++||+++++|.|+.+.+.. .|+..+++++
T Consensus 98 ~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l----~Gl~p~~v~~ 173 (450)
T 3bc8_A 98 KITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVT----AGFEPVVIEN 173 (450)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHH----TTCEEEEECC
T ss_pred HHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHH----cCCeeEEEEe
Confidence 555667788899999987644 67788887777776543 32111378999999999999999864 4777777643
Q ss_pred -----------hhhhc-cC--C-CEeEEEEEcCCCCe--eeccHHHHHHHHHhCCcEEEEEeccccccCCC-----CC-C
Q 001990 289 -----------KDIDY-KS--G-DVCGVLVQYPGTEG--EVLDYGDFIKNAHANGVKVVMATDLLALTILK-----PP-G 345 (985)
Q Consensus 289 -----------~~l~~-l~--~-~t~~V~v~~pn~~G--~i~dl~~I~~~a~~~galliV~a~~~alg~l~-----~p-~ 345 (985)
++|++ +. + +..++++++|+++| .+.||++|+++||++|++++|| + ++|... -| .
T Consensus 174 ~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD-~--A~G~~~~~~~~l~~~ 250 (450)
T 3bc8_A 174 VLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVN-N--AYGLQSSKCMHLIQQ 250 (450)
T ss_dssp EEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEE-C--TTTTTCHHHHHHHHH
T ss_pred eecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEE-C--CCchhhhhhHhHHHH
Confidence 34555 42 2 35567777888877 8899999999999999999995 2 333211 01 1
Q ss_pred --cc-cceEEEecC-ccccccCCCCCCceEEEEEch-hhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCc
Q 001990 346 --EL-GADIVVGSA-QRFGVPMGYGGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNI 420 (985)
Q Consensus 346 --~~-GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~-~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni 420 (985)
+. |||+++.|. |+++.|.+ .+++.+++ ++++++.. . |. .+ +|
T Consensus 251 a~~~~~AD~~v~S~HK~l~a~~~-----~~~l~~rd~~~~~~~~~-------~------~~----------g~--~s--- 297 (450)
T 3bc8_A 251 GARVGRIDAFVQSLDKNFMVPVG-----GAIIAGFNEPFIQDISK-------M------YP----------GR--AS--- 297 (450)
T ss_dssp HHHHSCCCEEEEEHHHHHSCCSS-----CEEEEESCHHHHHHHHH-------H------SC----------SC--BC---
T ss_pred HhcccCCCEEEECCccCCCchhc-----cEEEEecCHHHHHHHHH-------H------hh----------cC--Cc---
Confidence 23 899999999 77777753 36777653 44443200 0 00 00 11
Q ss_pred cchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCC---CEEEcCCCCcc-eEEEec-------CC-HHHH
Q 001990 421 CTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQGLPFFD-TVKVKC-------AD-AHAI 488 (985)
Q Consensus 421 ~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~~-~~~i~~-------~~-~~~l 488 (985)
.++.+.+..++ + .+|.+|++++.++..+++++++++|+++. |+++++.+... ...+.. .. ..++
T Consensus 298 --~SpsL~l~~~l-~-~~G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D~tkl 373 (450)
T 3bc8_A 298 --ASPSLDVLITL-L-SLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQL 373 (450)
T ss_dssp --SHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHH
T ss_pred --ccHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccCCCcee
Confidence 12333333333 3 44999999999999999999999998764 57777543221 233311 11 4555
Q ss_pred HHHHHHcCc------------------------eeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 489 ASAAYKIEM------------------------NLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 489 ~~~L~~~Gi------------------------~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.-.+...|+ +++..+...+.+.++..++++|+++|+++|..
T Consensus 374 ~i~~~~~g~sG~~v~~~~~~~~~~~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~ 438 (450)
T 3bc8_A 374 GSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDK 438 (450)
T ss_dssp HHHHHHTTCCSCEEECSCCEEEETTEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred EEEecCCCCccceeeecccccchhHHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHH
Confidence 555655543 22233457899999999999999999999974
No 241
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.73 E-value=1.3e-15 Score=171.78 Aligned_cols=297 Identities=8% Similarity=0.006 Sum_probs=204.3
Q ss_pred CCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhc
Q 001990 173 MGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQK 252 (985)
Q Consensus 173 ~g~~~~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~ 252 (985)
.|..+...|+.+.+++.+.-. ....|. . ....++++.+|+++|.++.++.+++|+|.+++.++.++.
T Consensus 23 ~~~~~~~~~~~v~~a~~~~~~---~~~~y~-~------~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l~--- 89 (354)
T 3ly1_A 23 FNENPLGMSPKAQAAARDAVV---KANRYA-K------NEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYA--- 89 (354)
T ss_dssp SCCCSSCCCHHHHHHHHHTGG---GTTSCC-H------HHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHHC---
T ss_pred CCCCCCCCCHHHHHHHHHHHh---hCcCCC-C------CchHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHHh---
Confidence 333344466777656554322 223332 1 124578899999999988889999999998888776652
Q ss_pred CCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch--------hhhc-cC--CCEeEEEEEcC-CCCeeeccHHHHHH
Q 001990 253 GKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--------DIDY-KS--GDVCGVLVQYP-GTEGEVLDYGDFIK 320 (985)
Q Consensus 253 ~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~~--------~l~~-l~--~~t~~V~v~~p-n~~G~i~dl~~I~~ 320 (985)
++||+|+++...|+++...++. .|.+++.++.+ ++++ ++ +++++|++++| |.+|.+.|++++.+
T Consensus 90 ~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~ 165 (354)
T 3ly1_A 90 SLEAQLVIPELTYGDGEHFAKI----AGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEP 165 (354)
T ss_dssp CTTCEEEEESSSCTHHHHHHHH----TTCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHHHH
T ss_pred CCCCeEEECCCCchHHHHHHHH----cCCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHHHH
Confidence 2789999999999998877653 58888888653 4555 65 78999999998 67999999888888
Q ss_pred HHHh--CCcEEEEEeccccccCCC----CC----Ccc-cceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCcee
Q 001990 321 NAHA--NGVKVVMATDLLALTILK----PP----GEL-GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIV 388 (985)
Q Consensus 321 ~a~~--~galliV~a~~~alg~l~----~p----~~~-GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~v 388 (985)
+++. +|+++++|. ..+..... .+ ..+ +.+++++|. |.|+.| |..+|++++++++.+.+...
T Consensus 166 l~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~~~~~-- 238 (354)
T 3ly1_A 166 WIASKPANTMFIVDE-AYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMA----GMRVGYAVAHPTVIALMGRY-- 238 (354)
T ss_dssp HHHTCCTTEEEEEEC-TTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCG----GGCCEEEECCHHHHHHHGGG--
T ss_pred HHHhCCCCeEEEEec-cHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccCh----hhhheeeecCHHHHHHHHHh--
Confidence 8887 999999953 33322121 11 123 677999997 887533 34579999988877665110
Q ss_pred eeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEE
Q 001990 389 GVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVE 468 (985)
Q Consensus 389 G~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~ 468 (985)
. . ..+.|. ....++.++ +...+.++++.++..++.+++++.|+++| ++
T Consensus 239 --------~---------------~-~~~~~~---~~~~a~~~~----l~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~ 286 (354)
T 3ly1_A 239 --------V---------------A-GEKINF---SGVDAALAS----MNDSAFITYSKKSNDVSRQILLKALEDLK-LP 286 (354)
T ss_dssp --------T---------------T-CSCCCH---HHHHHHHHH----TTCHHHHHHHHHHHHHHHHHHHHHHHHHT-CC
T ss_pred --------c---------------C-CCCCCH---HHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHHHHHHHCC-Ce
Confidence 0 0 011111 122222222 22235678889999999999999999886 77
Q ss_pred EcCCCCcceEEEecCC-HHHHHHHHHHcCceee-ee--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 469 VQGLPFFDTVKVKCAD-AHAIASAAYKIEMNLR-VV--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 469 ~~~~~~~~~~~i~~~~-~~~l~~~L~~~Gi~~~-~~--~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+... ...-+.+.++. ..++.+.|.++||.++ .. .++.+|++++ |++|+++++++|..
T Consensus 287 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~gi~v~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~ 347 (354)
T 3ly1_A 287 YLPS-EGNFVFHQLVVPLKDYQTHMADAGVLIGRAFPPADNWCRISLG---TPQEMQWVADTMRE 347 (354)
T ss_dssp BCCC-CSSEEEEECSSCHHHHHHHHHHTTEECCCCCTTCTTEEEEECC---CHHHHHHHHHHHHH
T ss_pred ECCC-CceEEEEECCCCHHHHHHHHHHCCEEEeecCCCCCCEEEEEcC---CHHHHHHHHHHHHH
Confidence 6532 12225566664 8899999999999887 11 2578999976 89999999999974
No 242
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.72 E-value=5.3e-16 Score=178.38 Aligned_cols=276 Identities=15% Similarity=0.073 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001990 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~-- 288 (985)
+...++++.+++++|.+ ...++.+|+.+++.++.++. . +||+|++++..|+++...++.+++..|++++.++.
T Consensus 64 ~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~~-~--~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d 138 (398)
T 2rfv_A 64 PTTDALEKKLAVLERGE--AGLATASGISAITTTLLTLC-Q--QGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAK 138 (398)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC-C--TTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTS
T ss_pred hHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh-C--CCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 34556888999999987 46678888877777666542 2 78999999999999999886555667999999876
Q ss_pred -hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCCCCcccceEEEecC-ccccccCC
Q 001990 289 -KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMG 364 (985)
Q Consensus 289 -~~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~p~~~GaDi~v~s~-k~lg~P~~ 364 (985)
+++++ +++++++|++++| |.+|.+.|+++|+++|+++|+++++| +..+.+....+..+|+|+++.|. |.|++|
T Consensus 139 ~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-e~~~~~~~~~~~~~~~di~~~s~sK~~~~~-- 215 (398)
T 2rfv_A 139 PEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVD-NTFMSPYCQQPLQLGADIVVHSVTKYINGH-- 215 (398)
T ss_dssp HHHHHHHCCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEE-CTTTCTTTCCGGGGTCSEEEEETTTTTTCS--
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEE-CCCcccccCCchhhCCcEEEEeCcccccCC--
Confidence 45555 7889999999998 68999999999999999999999995 45565555556678999999998 877643
Q ss_pred CCCCceEEEEEchhhHh-cCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchH
Q 001990 365 YGGPHAAFLATSQEYKR-MMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGL 443 (985)
Q Consensus 365 ~GGP~~G~l~~~~~~~~-~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl 443 (985)
|+|-.|++++++++++ .+.....+ + | .++.|. ...++..+++ +.+
T Consensus 216 -g~~~~G~~~~~~~~~~~~~~~~~~~----------~------------~-~~~~~~---~~~~~~~~~l-------~~~ 261 (398)
T 2rfv_A 216 -GDVIGGIIVGKQEFIDQARFVGLKD----------I------------T-GGCMSP---FNAWLTLRGV-------KTL 261 (398)
T ss_dssp -SCCCCEEEEECHHHHHHHHHTHHHH----------T------------T-CCCCCH---HHHHHHHHHH-------TTH
T ss_pred -CCceEEEEEECHHHHHHHHHHHHHh----------C------------C-CCCCCH---HHHHHHHhhh-------hhH
Confidence 3333489999987765 33110000 0 0 011111 1121222221 234
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEc--CC---------------CCcceEEEecCC-HHHHHHHHHH---cCceeee-
Q 001990 444 KTIAQRVHGLAGTFALGLKKLGTVEVQ--GL---------------PFFDTVKVKCAD-AHAIASAAYK---IEMNLRV- 501 (985)
Q Consensus 444 ~~i~~~~~~~a~~l~~~L~~~g~~~~~--~~---------------~~~~~~~i~~~~-~~~l~~~L~~---~Gi~~~~- 501 (985)
....++..+++.++++.|++.+.+.-+ .. .....+.|.+++ ..+..+.+.+ .|+.++.
T Consensus 262 ~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~G 341 (398)
T 2rfv_A 262 GIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLG 341 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHTTCSSSEECSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCHHHHHHHHHhCCcceeccCCC
Confidence 445556677888888888876423211 10 112346666665 2333333322 3443211
Q ss_pred --------------------------ecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001990 502 --------------------------VDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 502 --------------------------~~~~~lris~~~~~t~edid~ll~~l~ 528 (985)
..++.+|+|++..++++++++++++|.
T Consensus 342 ~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~ 394 (398)
T 2rfv_A 342 DTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIR 394 (398)
T ss_dssp SSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHH
T ss_pred CcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHH
Confidence 115789999999999999999999986
No 243
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.72 E-value=7.3e-17 Score=185.79 Aligned_cols=258 Identities=14% Similarity=0.039 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHhCCCcccee--cChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCCCcHH----------HHHhc
Q 001990 634 FNNLGEWLCTITGFDSFSLQ--PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPA----------TAAMC 700 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~~~~--~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~-~~Hg~~~~----------~~~~~ 700 (985)
..++++.+|+++|.+.+.++ +++|++++..++.++. .++|+||+++ +.|+.... .++..
T Consensus 61 ~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all--------~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~ 132 (409)
T 3jzl_A 61 RDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGIL--------RPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDF 132 (409)
T ss_dssp HHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHC--------CTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGG
T ss_pred HHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhc--------CCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHc
Confidence 56788999999999886554 6788876644444331 4778999987 76665542 34567
Q ss_pred CcEEEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEc----C-CCccccccCHHHHHHHHHH--cCCEEEEEccccccc
Q 001990 701 GMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTY----P-STHGVYEEGIDEICKIIHD--NGGQVYMDGANMNAQ 773 (985)
Q Consensus 701 G~~v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~----p-n~~G~i~~di~eI~~la~~--~g~lliVD~a~~~~~ 773 (985)
|++++.++.+++|.+|+++++++++ ++|++|++++ | |++|.+. |+++|+++||+ +|+++++|+++....
T Consensus 133 G~~~~~v~~~~~g~~d~e~l~~ai~---~~tklV~i~~s~g~p~nptg~v~-~l~~I~~la~~~~~~~~livD~a~~~~~ 208 (409)
T 3jzl_A 133 HIGYSSVPLLENGDVDFPRIAKKMT---PKTKMIGIQRSRGYADRPSFTIE-KIKEMIVFVKNINPEVIVFVDNCYGEFV 208 (409)
T ss_dssp TCEEEECCCCTTSCCCHHHHHHHCC---TTEEEEEEECSCTTSSSCCCCHH-HHHHHHHHHHHHCTTCEEEEECTTCTTT
T ss_pred CCEEEEeCCCCCCCcCHHHHHHhcc---CCCeEEEEECCCCCCCCCcCccc-cHHHHHHHHHhhCCCCEEEEeCCccccc
Confidence 9999999998889999999999997 7899999998 8 5799998 89999999999 999999999986432
Q ss_pred cCCCCCCcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHH
Q 001990 774 VGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 774 ~g~~~~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~ 853 (985)
. ...|..+|+|++++|+||+|+. .|.+.+|++++++++++.+..+.. ..+.+...+...+.
T Consensus 209 ~-~~~p~~~g~Div~~S~sK~lgg---~~~~~GG~v~~~~~li~~l~~~~~-----------~~~~g~~~g~~~~~---- 269 (409)
T 3jzl_A 209 E-YQEPPEVGADIIAGSLIKNPGG---GLAKTGGYIAGKEALVDLCGYRLT-----------TPGIGREAGASLYS---- 269 (409)
T ss_dssp S-SCCSGGGTCSEEEEETTSGGGT---TTCSSCEEEEECHHHHHHHHHHHS-----------CTTTGGGCCCCTTC----
T ss_pred c-cCCccccCCeEEEECccccCCc---cCCceEEEEEeCHHHHHHHHHHhc-----------cccccccccccHHH----
Confidence 1 1356678999999999999952 122567999999877655422100 00000000000000
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeE-EEEEEecCccccCCCCHHHHHHHHHHCC
Q 001990 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAH-EFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 854 ~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~-~~vv~~~~~~~~~g~~~~~l~~~L~e~G 931 (985)
+++.++.+ +.+..+.++..+++.++++.|++ ++.+ ++++..+... .+.+.+. .......+++.|.+..
T Consensus 270 --~~~~l~gl--~~~~~r~~~~~~~a~~la~~L~~~g~~v-~p~~~~~~~~~i~~i~l~-----~~~~~~~~~~~L~~~~ 339 (409)
T 3jzl_A 270 --LLEMYQGF--FLAPHVTAQAIKGARFTAAMLAEFGVEA-DPVWDAPRTDLIQSVSFH-----NKEKMVAFAQAIQAAS 339 (409)
T ss_dssp --HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTCEE-ESCTTSCCSSSCCEEECS-----CHHHHHHHHHHHHHTS
T ss_pred --HHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHhCCCcc-cCCCCCCCccEEEEEEeC-----CHHHHHHHHHHHHhcC
Confidence 11222222 22345667788899999999988 6665 5442111100 1223332 1234567888888875
Q ss_pred C
Q 001990 932 F 932 (985)
Q Consensus 932 i 932 (985)
.
T Consensus 340 ~ 340 (409)
T 3jzl_A 340 P 340 (409)
T ss_dssp S
T ss_pred c
Confidence 4
No 244
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.72 E-value=4.6e-16 Score=176.75 Aligned_cols=270 Identities=12% Similarity=0.106 Sum_probs=185.1
Q ss_pred HHHHHHHHhhC------CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe--
Q 001990 215 NFQTMIADLTG------LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS-- 286 (985)
Q Consensus 215 e~q~~ia~L~g------~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~-- 286 (985)
++++.+|++++ .++.++.+++|+|.++++++.++. . +||+|++++..|+++...++. .|.+++.+
T Consensus 70 ~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~-~--~gd~vl~~~p~~~~~~~~~~~----~g~~~~~v~~ 142 (370)
T 2z61_A 70 ELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSII-D--DGDEVLIQNPCYPCYKNFIRF----LGAKPVFCDF 142 (370)
T ss_dssp HHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHC-C--TTCEEEEESSCCTHHHHHHHH----TTCEEEEECS
T ss_pred HHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhc-C--CCCEEEEeCCCchhHHHHHHH----cCCEEEEeCC
Confidence 35556666654 556789899999998888776652 2 789999999999998887653 57777776
Q ss_pred Cchhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCC----CC----CcccceEEEecC
Q 001990 287 DLKDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK----PP----GELGADIVVGSA 356 (985)
Q Consensus 287 ~~~~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~----~p----~~~GaDi~v~s~ 356 (985)
|++++++ +++++++|++.+| |++|.+.|++ |.++|+++|+++++| +..+.+... +. +..+.|++++|.
T Consensus 143 d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~D-e~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~ 220 (370)
T 2z61_A 143 TVESLEEALSDKTKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISD-EIYNGLVYEGKCYSAIEFDENLEKTILINGF 220 (370)
T ss_dssp SHHHHHHHCCSSEEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEE-CTTTTCBSSSCCCCGGGTCTTCSSEEEEEES
T ss_pred CHHHHHHhcccCceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEE-cchhhcccCCCCcCHHHccCCCCcEEEEecC
Confidence 4577777 7778999999988 6799999999 999999999999995 233322221 11 235789999998
Q ss_pred -ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHH
Q 001990 357 -QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYA 435 (985)
Q Consensus 357 -k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~ 435 (985)
|.++.| |-.+|++++++++.+.+.....+ ...+.|. ....++.++ +
T Consensus 221 sK~~~~~----G~r~G~~~~~~~~~~~~~~~~~~------------------------~~~~~~~---~~~~a~~~~--l 267 (370)
T 2z61_A 221 SKLYAMT----GWRIGYVISNDEIIEAILKLQQN------------------------LFISAPT---ISQYAALKA--F 267 (370)
T ss_dssp TTTTTCG----GGCCEEEECCHHHHHHHHHHHHH------------------------HTSSSCH---HHHHHHGGG--G
T ss_pred hhccCCc----cceEEEEEECHHHHHHHHHHHhh------------------------cccCCCH---HHHHHHHHH--H
Confidence 877432 12379999998877655110000 0011111 111121111 1
Q ss_pred HHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecC-CHHHHHHHHH-HcCceeeee------cCCeE
Q 001990 436 VYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA-DAHAIASAAY-KIEMNLRVV------DSNTV 507 (985)
Q Consensus 436 ~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~-~~~~l~~~L~-~~Gi~~~~~------~~~~l 507 (985)
..++.+.++++.++..++.+++.+.|+++| +++.......-+.+..+ +..++.+.|. ++||.+... .++.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~ 346 (370)
T 2z61_A 268 EKETEREINSMIKEFDRRRRLVLKYVKDFG-WEVNNPIGAYYVFPNIGEDGREFAYKLLKEKFVALTPGIGFGSKGKNYI 346 (370)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CBCCCCCBTTEECCBCSSCHHHHHHHHHHHHCEECEEGGGGCGGGSSBE
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHcC-CeecCCCcceEEEEecCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEE
Confidence 211355678888999999999999999886 77653211111223555 3788999997 789987542 25789
Q ss_pred EEEeccCCCHHHHHHHHHHHhC
Q 001990 508 TASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 508 ris~~~~~t~edid~ll~~l~~ 529 (985)
|++++ +++++++++++.|..
T Consensus 347 Ri~~~--~~~~~i~~~~~~l~~ 366 (370)
T 2z61_A 347 RISYA--NSYENIKEGLERIKE 366 (370)
T ss_dssp EEECC--SCHHHHHHHHHHHHH
T ss_pred EEEEe--CCHHHHHHHHHHHHH
Confidence 99999 699999999998863
No 245
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.72 E-value=5.7e-17 Score=187.04 Aligned_cols=273 Identities=12% Similarity=0.086 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC
Q 001990 208 GRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD 287 (985)
Q Consensus 208 g~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~ 287 (985)
|..+...++++.+++++|.+. ..++.+||.+.++++.++. ++||+|+++...|+++...++. .|.+++.++
T Consensus 101 g~~~~~~~l~~~la~~~g~~~--~i~~~sGt~a~~~~l~~~~---~~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~~~ 171 (409)
T 3kki_A 101 QNDYDKPMIEKRLAKFTGFDE--CLLSQSGWNANVGLLQTIC---QPNTNVYIDFFAHMSLWEGARY----ANAQAHPFM 171 (409)
T ss_dssp CSTTTSCHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHHC---CTTCEEEEETTSCHHHHHHHHH----TTCEEEEEC
T ss_pred CCcHHHHHHHHHHHHHhCCCe--EEEecchHHHHHHHHHHhc---CCCCEEEECCCcCHHHHHHHHH----cCCeEEEec
Confidence 333444567789999999875 4567888877776666542 3889999999999999988753 477777764
Q ss_pred ---chhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCCC---------CcccceEE
Q 001990 288 ---LKDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPP---------GELGADIV 352 (985)
Q Consensus 288 ---~~~l~~-l~~-~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~p---------~~~GaDi~ 352 (985)
++++++ +.+ ++++|++.+| |++|.+.|+++|.++|+++|+++++| +..+.+.+... ...++||+
T Consensus 172 ~~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~D-e~~~~g~~g~~g~~~~~~~~~~~~~di~ 250 (409)
T 3kki_A 172 HNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVD-ESHSLGTHGPNGAGLLAELGLTREVHFM 250 (409)
T ss_dssp TTCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEE-CTTTTTTSSGGGCCHHHHHTCGGGCSEE
T ss_pred CCCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEE-CCccccccCCCCCcchhhcCCCCCCCEE
Confidence 456666 543 4788999887 67999999999999999999999995 34444333211 12367999
Q ss_pred EecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHH
Q 001990 353 VGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMA 431 (985)
Q Consensus 353 v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~a 431 (985)
++|. |.|+.+ .|++.+++++.+.+... ...+. . ++ . .++....+..+
T Consensus 251 ~~s~sK~~~~~-------gg~v~~~~~~~~~~~~~----------~~~~~-----------~--~~-~-~~~~~~aa~~a 298 (409)
T 3kki_A 251 TASLAKTFAYR-------AGAIWCNNEVNRCVPFI----------SYPAI-----------F--SS-T-LLPYEAAGLET 298 (409)
T ss_dssp EEESSSTTCSS-------CEEEEESSSGGGTHHHH----------CHHHH-----------H--SB-C-CCHHHHHHHHH
T ss_pred EeecchhhCCC-------ceEEEECHHHHHHHHHh----------CcCcc-----------c--cC-C-CcHHHHHHHHH
Confidence 9997 887532 38888887766543100 00000 0 00 0 11123333334
Q ss_pred HHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeee------
Q 001990 432 AMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVV------ 502 (985)
Q Consensus 432 a~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~---~~~l~~~L~~~Gi~~~~~------ 502 (985)
++ ..+.. .+++.++..++.+++++.|+++| +++.+. ...+.+..+. ..++.++|.++||.+...
T Consensus 299 al--~~~~~--~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~--~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~~~~~ 371 (409)
T 3kki_A 299 TL--EIIES--ADNRRQHLDRMARKLRIGLSQLG-LTIRSE--SQIIGLETGDERNTEKVRDYLESNGVFGSVFCRPATS 371 (409)
T ss_dssp HH--HHHHH--CHHHHHHHHHHHHHHHHHHHTTT-CCCCCS--SSEEEEEEESHHHHHHHHHHHHHTTEECEEECTTSSC
T ss_pred HH--HHHhc--CHHHHHHHHHHHHHHHHHHHHcC-CccCCC--CCEEEEEeCCHHHHHHHHHHHHHCCceEeeeCCCCcC
Confidence 43 22211 25778888899999999999987 776532 2234444443 667999999999987542
Q ss_pred -cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 503 -DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
..+.+|++++..+|++|+++++++|..
T Consensus 372 ~~~~~iRi~~~~~~t~e~i~~~~~~l~~ 399 (409)
T 3kki_A 372 KNKNIIRLSLNSDVNDEQIAKIIEVCSD 399 (409)
T ss_dssp TTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEccCCCCHHHHHHHHHHHHH
Confidence 136899999999999999999999974
No 246
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.72 E-value=4e-16 Score=182.35 Aligned_cols=308 Identities=19% Similarity=0.178 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHhCCCc-cceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCCCcHHHHHhcC----------
Q 001990 634 FNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG---------- 701 (985)
Q Consensus 634 ~~el~~~la~l~G~~~-~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv-~~~~Hg~~~~~~~~~G---------- 701 (985)
..++.++|+++++.+. ..++.+||++++++++..+|.|+..+|.+++.+||. ...+||....++...|
T Consensus 113 ~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~ 192 (473)
T 4e3q_A 113 TVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLP 192 (473)
T ss_dssp HHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCS
T ss_pred HHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCC
Confidence 4468888999986543 247789999999999999999888887666677775 6689998776654322
Q ss_pred -cEEEEEeCC------CCCCC-------CHHHHHHHHHhcC-CCeEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCE
Q 001990 702 -MKIVSVGTD------AKGNI-------NIEELRKAAEANR-DNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQ 762 (985)
Q Consensus 702 -~~v~~v~~~------~~g~i-------Dle~L~~~i~~~~-~~t~~Vvi~~p-n~~G~i~~---di~eI~~la~~~g~l 762 (985)
..+..++.. ..+.. ..+++++.+.+.. +++++|+++-. ...|++.+ -+++|.++|++||++
T Consensus 193 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gil 272 (473)
T 4e3q_A 193 LPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIP 272 (473)
T ss_dssp CTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCC
T ss_pred CCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceE
Confidence 123334332 11211 1345666665433 45677766532 45677753 399999999999999
Q ss_pred EEEEccccccccCCCCCCcCC--------CcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCC
Q 001990 763 VYMDGANMNAQVGLTSPGYIG--------ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPE 834 (985)
Q Consensus 763 liVD~a~~~~~~g~~~~g~~g--------~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~ 834 (985)
||+|+++ .|+.+.|.++ +|+++++ |.+ ++|+..+|.+.+++++.+.+....... .
T Consensus 273 LI~DEV~----tGfGRtG~~fa~e~~gv~PDi~t~~--K~l----~gG~~Pl~av~~~~~i~~~~~~~~~~~-~------ 335 (473)
T 4e3q_A 273 VISDEVI----CGFGRTGNTWGCVTYDFTPDAIISS--KNL----TAGFFPMGAVILGPELSKRLETAIEAI-E------ 335 (473)
T ss_dssp EEEECTT----TSSSTTSSSCHHHHTTCCCSEEEEC--GGG----GTTSSCCEEEEECHHHHHHHHHHHHHH-S------
T ss_pred EeccCcc----ccCCcccchhHHHhcCCCCChHHhc--ccc----cCCCCCcccccccHHHHHHhccccccc-c------
Confidence 9999876 4565665543 7998763 776 345456777888887765432100000 0
Q ss_pred CCCCCCCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc---CCee-EcCCCCceeEEEEEEec
Q 001990 835 KSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL-FRGVNGTVAHEFIVDLR 910 (985)
Q Consensus 835 ~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~---~~i~-~~g~~~~~~~~~vv~~~ 910 (985)
.....+++.|+++.++++.+.|..+.++++.+ +..+..++|.++|++. ..+. +.|. +. + +-+++.
T Consensus 336 ----~~~hg~T~~Gnpla~Aaala~L~~i~~~~l~~---~~~~~g~~l~~~L~~l~~~~~v~~vRG~-Gl-~--~gielv 404 (473)
T 4e3q_A 336 ----EFPHGFTASGHPVGCAIALKAIDVVMNEGLAE---NVRRLAPRFEERLKHIAERPNIGEYRGI-GF-M--WALEAV 404 (473)
T ss_dssp ----CCCCCCTTTTCHHHHHHHHHHHHHHHHSSHHH---HHHHHHHHHHHHHHHHTTSTTEEEEEEE-TT-E--EEEEEC
T ss_pred ----ccccCCCCCCCcchhhhhhhhhhhhccccHHH---HHHHHHHHHHHHHHHHhcCCCeeEEeec-ce-E--EEEEEe
Confidence 00001234457788888889999888777654 4556778888888762 2221 1111 11 1 223321
Q ss_pred Cccc-cCC-----CCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHH
Q 001990 911 GLKN-TAG-----IEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 911 ~~~~-~~g-----~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
.-+. ... .-...+.+.+.++|+++... .+.||++|....|++||| +++++|.++++++.
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----g~~i~l~PPL~it~~eid---~~~~~l~~al~~v~ 469 (473)
T 4e3q_A 405 KDKASKTPFDGNLSVSERIANTCTDLGLICRPL----GQSVVLCPPFILTEAQMD---EMFDKLEKALDKVF 469 (473)
T ss_dssp SBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEE----TTEEEECCCTTCCHHHHH---HHHHHHHHHHHHHH
T ss_pred cCccccccccccHHHHHHHHHHHHHCCcEEEec----CCEEEEeCCCCCCHHHHH---HHHHHHHHHHHHHH
Confidence 0000 000 11467889999999987532 478999999999999999 99999999888764
No 247
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.72 E-value=1.3e-15 Score=172.44 Aligned_cols=316 Identities=11% Similarity=0.038 Sum_probs=201.0
Q ss_pred ecCCCCCCCCCcHHHHHHHHhCC-cccc---c---cCCChhhHhhHHHHHHHHHHHHHHHhhCCCCc-cee-eccchHHH
Q 001990 170 FIGMGYYNTHVPPVILRNIMENP-AWYT---Q---YTPYQAEIAQGRLESLLNFQTMIADLTGLPMS-NAS-LLDEGTAA 240 (985)
Q Consensus 170 ~lG~g~~~~~~p~~v~~~i~~~~-~~~t---~---~~py~~e~sqg~l~~i~e~q~~ia~L~g~~~~-~~s-l~~~~ta~ 240 (985)
++..|. ...|+.+.+++.+.- .|.. + ++.+ ..+..+...++++.+++++|.+.. ++. ++.|+|.+
T Consensus 7 l~~~~~--~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a 80 (362)
T 2c0r_A 7 NFNAGP--AALPLEVLERAQAEFVDYQHTGMSIMEMSHR----GAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQ 80 (362)
T ss_dssp ECCSSS--CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTT----SHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHH
T ss_pred eccCCC--CCCCHHHHHHHHHHHhhhhhcCccccccCCC----cHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHH
Confidence 345553 357777766665432 1100 0 1112 233456777899999999999764 554 45888988
Q ss_pred HHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---------hhhc--cCCCEeEEEEEcC-CC
Q 001990 241 AEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK---------DIDY--KSGDVCGVLVQYP-GT 308 (985)
Q Consensus 241 ~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~~---------~l~~--l~~~t~~V~v~~p-n~ 308 (985)
+.+++.++. . +||+|++....|.+.. +...++..| +++.++.+ ++++ ++++|++|++++| |.
T Consensus 81 ~~~~~~~l~-~--~gd~vl~~~~~~~~~~--~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~i~~~t~~v~~~~~~n~ 154 (362)
T 2c0r_A 81 FAMIPMNFL-K--EGQTANYVMTGSWASK--ALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQLQDNAAYLHLTSNETI 154 (362)
T ss_dssp HHHHHHHHC-C--TTCEEEEEECSHHHHH--HHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCCCCTTEEEEEEESEETT
T ss_pred HHHHHHhcC-C--CCCeEEEEecCcHhHH--HHHHHHHhC-CeEEEecccccccccCCCHHHcccCCCcCEEEEeCCcCc
Confidence 887777652 3 7899988765544321 111123346 66655432 2222 5788999999887 78
Q ss_pred Ceee-ccHHHHHHHHHhCCcEEEEEeccccccCCCC-CCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCC
Q 001990 309 EGEV-LDYGDFIKNAHANGVKVVMATDLLALTILKP-PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPG 385 (985)
Q Consensus 309 ~G~i-~dl~~I~~~a~~~galliV~a~~~alg~l~~-p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~ 385 (985)
+|.+ .|+++| +|++++||. ..+.+.... ..+ .|++++++ |+++ | ||+||+++++++++.+..
T Consensus 155 tG~~~~~l~~i------~~~~vivD~-a~~~~~~~~~~~~--~d~~~~s~~K~~g-~-----~G~G~l~~~~~~~~~l~~ 219 (362)
T 2c0r_A 155 EGAQFKAFPDT------GSVPLIGDM-SSDILSRPFDLNQ--FGLVYAGAQKNLG-P-----SGVTVVIVREDLVAESPK 219 (362)
T ss_dssp TTEECSSCCCC------TTSCEEEEC-TTTTTSSCCCGGG--CSEEEEETTTTTC-C-----SSCEEEEEEGGGSSSCCT
T ss_pred cceeccccccc------CCCEEEEEC-hhhccCCccchhH--CcEEEEecccccc-C-----cCcEEEEEcHHHHhhccc
Confidence 9995 888887 799999953 445554321 122 49999998 6664 3 358999999988776632
Q ss_pred ceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHHHHHHHhcC
Q 001990 386 RIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKL 464 (985)
Q Consensus 386 ~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~ 464 (985)
.. + +.+++.. .+......+|.|. ....++.+++ .++..+ |++++.++..++++++++.|+++
T Consensus 220 ~~----------~-~~~~~~~-~~~~~~~~~t~~~---~~~~a~~~al--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 282 (362)
T 2c0r_A 220 HL----------P-TMLRYDT-YVKNNSLYNTPPS---FGIYMVNEVL--KWIEERGGLEGVQQANRKKASLIYDAIDQS 282 (362)
T ss_dssp TS----------C-GGGCHHH-HHHTTTCSSCCCH---HHHHHHHHHH--HHHHHTTHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cC----------c-hHHhHHH-HhhccCcCCCchH---HHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 10 0 1111100 0000011244443 3444555554 444444 78999999999999999999998
Q ss_pred CCE-EEcCCC---CcceEEEecCC---HHHHHHHHHHcCceeeee--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 465 GTV-EVQGLP---FFDTVKVKCAD---AHAIASAAYKIEMNLRVV--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 465 g~~-~~~~~~---~~~~~~i~~~~---~~~l~~~L~~~Gi~~~~~--~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
|++ ++...+ ....+.+..++ +.++.+.|.++||.+... ..+.+|+|++.++|++|+++++++|+.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~~l~~ 356 (362)
T 2c0r_A 283 GGFYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEH 356 (362)
T ss_dssp TTSSEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCccccCCChHHcCCcEEEEEcCCcchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 645 765321 12236666663 778999999999976432 146799999999999999999999973
No 248
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.72 E-value=5.4e-16 Score=176.02 Aligned_cols=280 Identities=11% Similarity=0.024 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhh--hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-
Q 001990 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN--IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~--~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~- 288 (985)
...++++.+|+++|.+ ++.+++|||.+++.++.+++ .. +||+|+++...|+++...++. .|++++.++.
T Consensus 33 ~~~~l~~~la~~~~~~--~v~~~~ggt~al~~~~~~~~~~~~--~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~~~~~ 104 (375)
T 2fnu_A 33 RSLLFEEALCEFLGVK--HALVFNSATSALLTLYRNFSEFSA--DRNEIITTPISFVATANMLLE----SGYTPVFAGIK 104 (375)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHSSCCCT--TSCEEEECSSSCTHHHHHHHH----TTCEEEECCBC
T ss_pred HHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHhcccCC--CCCEEEECCCccHhHHHHHHH----CCCEEEEeccC
Confidence 3567889999999987 68889999999888887764 33 789999999999999988764 5888888754
Q ss_pred -------hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCC---CCcccceEEEec--
Q 001990 289 -------KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP---PGELGADIVVGS-- 355 (985)
Q Consensus 289 -------~~l~~-l~~~t~~V~v~~pn~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~---p~~~GaDi~v~s-- 355 (985)
+++++ +++++++|++.+| +|.+.|+++|.++|+++|+++++| +.++.+.... .+.++ |+++.+
T Consensus 105 ~~~~~d~~~l~~~i~~~~~~v~~~~~--tG~~~~l~~i~~l~~~~~~~li~D-~a~~~~~~~~~~~~~~~~-~i~~~s~s 180 (375)
T 2fnu_A 105 NDGNIDELALEKLINERTKAIVSVDY--AGKSVEVESVQKLCKKHSLSFLSD-SSHALGSEYQNKKVGGFA-LASVFSFH 180 (375)
T ss_dssp TTSSBCGGGSGGGCCTTEEEEEEECG--GGCCCCHHHHHHHHHHHTCEEEEE-CTTCTTCEETTEETTSSS-SEEEEECC
T ss_pred CCCCCCHHHHHhhcCcCceEEEEeCC--cCCccCHHHHHHHHHHcCCEEEEE-CccccCCeECCeeccccC-CeEEEeCC
Confidence 45555 7788999888887 899999999999999999999995 3445443211 23444 555444
Q ss_pred C-ccccccCCCCCCceEEEEEc--hhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCcc-chhHHHHHHH
Q 001990 356 A-QRFGVPMGYGGPHAAFLATS--QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNIC-TAQALLANMA 431 (985)
Q Consensus 356 ~-k~lg~P~~~GGP~~G~l~~~--~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~-t~~~l~a~~a 431 (985)
+ |.+ +| |.|+++++ +++.+++.....+...+. . ..+.+.++.+.. ....+. +
T Consensus 181 ~~K~~-~~------g~g~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~---~ 236 (375)
T 2fnu_A 181 AIKPI-TT------AEGGAVVTNDSELHEKMKLFRSHGMLKK-D-------------FFEGEVKSIGHNFRLNEIQ---S 236 (375)
T ss_dssp TTSSS-CC------SSCEEEEESCHHHHHHHHHHTBTTEEES-S-------------SSCEEESSCCCBCCCCHHH---H
T ss_pred CCCCc-cc------cCceEEEeCCHHHHHHHHHHHhcCCccc-c-------------ccccccccccccCCCCHHH---H
Confidence 4 544 22 34566663 556554421111100000 0 001111111111 112222 2
Q ss_pred HHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCC-----CCcceEEEecC-----CHHHHHHHHHHcCceeee
Q 001990 432 AMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-----PFFDTVKVKCA-----DAHAIASAAYKIEMNLRV 501 (985)
Q Consensus 432 a~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-----~~~~~~~i~~~-----~~~~l~~~L~~~Gi~~~~ 501 (985)
++ .+...++++++.++..++++++.+.|+++.++++... ..+..+.+.++ ...++.+.|.++||.++.
T Consensus 237 a~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~ 314 (375)
T 2fnu_A 237 AL--GLSQLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQV 314 (375)
T ss_dssp HH--HHHHHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBC
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCccccchHHHHHHHHHHCCCCccc
Confidence 22 1122467888999999999999999999834888632 11122233333 367899999999998762
Q ss_pred ec-------------------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 502 VD-------------------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ~~-------------------------~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.. .+.+|++++.++|++|+++++++|..
T Consensus 315 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~ 367 (375)
T 2fnu_A 315 HYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLK 367 (375)
T ss_dssp CCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred cccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHH
Confidence 10 15799999999999999999999974
No 249
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.72 E-value=8.1e-16 Score=179.08 Aligned_cols=295 Identities=16% Similarity=0.151 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHhCCCc--cceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCCCcHHHHHhcC---------
Q 001990 634 FNNLGEWLCTITGFDS--FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG--------- 701 (985)
Q Consensus 634 ~~el~~~la~l~G~~~--~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv-~~~~Hg~~~~~~~~~G--------- 701 (985)
..++.+.|++++..+. ..++.|||++++++++..+|.|. +|.+||. ...+||....+....+
T Consensus 109 ~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t------~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~ 182 (456)
T 4atq_A 109 YVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLAT------GRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNF 182 (456)
T ss_dssp HHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH------CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTS
T ss_pred HHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhh------cCCeEEEEecccCCccccccccccCccccccCC
Confidence 3467788899886432 24678999999999999888763 4566775 5689998876543211
Q ss_pred ----cEEEEEeCCC------CCCCCHHHHHHHHHh-----cCCCeEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCE
Q 001990 702 ----MKIVSVGTDA------KGNINIEELRKAAEA-----NRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQ 762 (985)
Q Consensus 702 ----~~v~~v~~~~------~g~iDle~L~~~i~~-----~~~~t~~Vvi~~p-n~~G~i~~---di~eI~~la~~~g~l 762 (985)
..+..+|... ....+.+.+++.++. ..+++++|+++-. ...|.+.+ .+++|.++|++||++
T Consensus 183 ~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gil 262 (456)
T 4atq_A 183 GPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIV 262 (456)
T ss_dssp CSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCE
T ss_pred CCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCc
Confidence 2355666531 122345555554432 2357888887642 35677653 399999999999999
Q ss_pred EEEEccccccccCCCCCCcCC--------CcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCC
Q 001990 763 VYMDGANMNAQVGLTSPGYIG--------ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPE 834 (985)
Q Consensus 763 liVD~a~~~~~~g~~~~g~~g--------~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~ 834 (985)
||+|+++ .|+.+.|.++ +|+++++ |.+ |+|.| +|.+.+++++.+.+.....
T Consensus 263 lI~DEV~----tG~GRtG~~~a~e~~gv~PDivt~g--K~l----ggg~P-~~av~~~~~i~~~~~~~~~---------- 321 (456)
T 4atq_A 263 FIADEVQ----SGFCRTGEWFAVDHEGVVPDIITMA--KGI----AGGLP-LSAITGRADLLDAVHPGGL---------- 321 (456)
T ss_dssp EEEECTT----TTTTTTSSSSGGGGTTCCCSEEEEC--GGG----GTTSS-CEEEEEEHHHHTTSCTTSS----------
T ss_pred eEecccc----cccCCccccccccccCCCCchhhhh--hcc----cCcCC-ceeeEecHHHHhcccccCC----------
Confidence 9999987 3444554432 7998774 766 34444 6677788777665432110
Q ss_pred CCCCCCCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc---CC-----ee--EcCCCCceeEE
Q 001990 835 KSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YP-----IL--FRGVNGTVAHE 904 (985)
Q Consensus 835 ~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~---~~-----i~--~~g~~~~~~~~ 904 (985)
.+++.|+++.++++.+.|..+.++++.+ +..+..++|.++|++. +. ++ +.|. +. +
T Consensus 322 --------~~Tf~gnpla~aaala~L~~i~~~~l~~---~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~-Gl-~-- 386 (456)
T 4atq_A 322 --------GGTYGGNPVACAAALAAIDTMEQHDLNG---RARHIEELALGKLRELAAELSAGGGSVVGDIRGR-GA-M-- 386 (456)
T ss_dssp --------CCSSSSCHHHHHHHHHHHHHHHHTTHHH---HHHHHHHHHHHHHHHHHHHCC-----CEEEEEEE-TT-E--
T ss_pred --------CCCCCCChHHHHhhHHHHHHHhhccHHH---HHHHHHHHHHHHHHHHHHhcccccCCceEEeeec-ce-E--
Confidence 1234567788888889999888777644 4555667777777641 21 11 1111 11 1
Q ss_pred EEEEecCcc--ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 905 FIVDLRGLK--NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 905 ~vv~~~~~~--~~~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
+-+++..-. .....-...+.+.|.++|+++.... +..+.||++|....|++||| +++++|.++++.
T Consensus 387 ~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g-~~~~~irl~PpL~it~~~id---~~l~~l~~al~a 454 (456)
T 4atq_A 387 LAIELVQPGSKEPNAELTKAVAAACLKEGVIILTCG-TYGNVIRLLPPLVISDELLI---DGLEVLAAAIKA 454 (456)
T ss_dssp EEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEEC-TTSCEEEECCCTTCCHHHHH---HHHHHHHHHHHH
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEecC-CCCCEEEEECCCCCCHHHHH---HHHHHHHHHHHh
Confidence 223332100 0000113568888999999875332 23578999999999999999 999999988763
No 250
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.72 E-value=2e-15 Score=170.83 Aligned_cols=266 Identities=12% Similarity=0.074 Sum_probs=187.9
Q ss_pred HHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchh---
Q 001990 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKD--- 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~~~--- 290 (985)
.++++.+|+++|.++.++.+++|+|.+++.++.++. ++||+|+++...|+.+...++. .|.+++.++.++
T Consensus 68 ~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l~---~~gd~Vl~~~p~~~~~~~~~~~----~g~~~~~v~~~~~~~ 140 (360)
T 3hdo_A 68 QKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFA---AEGEEIGYVHPSYSYYGTLAEV----QGARVRTFGLTGDFR 140 (360)
T ss_dssp HHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHC---CTTCEEEEESSSCTHHHHHHHH----HTCEEEEECBCTTSS
T ss_pred HHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHHh---CCCCEEEEcCCChHHHHHHHHH----CCCEEEEeeCCCCCC
Confidence 357789999999888889999999998888776652 2789999999999998877654 488888887632
Q ss_pred hhcc-C-CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCCC----CcccceEEEecC-cccccc
Q 001990 291 IDYK-S-GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPP----GELGADIVVGSA-QRFGVP 362 (985)
Q Consensus 291 l~~l-~-~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~p----~~~GaDi~v~s~-k~lg~P 362 (985)
++++ . .++++|++.+| |.+|.+.|+++|.++|+++|+++++|. ..+...-..+ ..++.+++++|. |.++.|
T Consensus 141 ~~~l~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 219 (360)
T 3hdo_A 141 IAGFPERYEGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDE-TYAEFAESNALELVRRHENVVVTRTLSKSYSLA 219 (360)
T ss_dssp BTTCCSSBCSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEEC-TTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCT
T ss_pred HHHHHhhcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEEC-ChHhhCCcchhHHhccCCCEEEEecchHhhcCC
Confidence 2221 1 23568888888 689999999999999999999999952 2221111111 235667888887 887633
Q ss_pred CCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcch
Q 001990 363 MGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEG 442 (985)
Q Consensus 363 ~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~G 442 (985)
|..+|++++++++.+.+... +...+.| .....+..+++ . ..+.
T Consensus 220 ----G~r~G~~~~~~~~~~~~~~~--------------------------~~~~~~~---~~~~~a~~~~l--~--~~~~ 262 (360)
T 3hdo_A 220 ----GMRIGLAIARPEVIAALDKI--------------------------RDHYNLD---RLAQAACVAAL--R--DQAY 262 (360)
T ss_dssp ----TSCCEEEECCHHHHHHHHHH--------------------------SCSCCSC---HHHHHHHHHHH--H--CHHH
T ss_pred ----ccceeeEeeCHHHHHHHHHh--------------------------CCCCCCC---HHHHHHHHHHh--c--CHHH
Confidence 44578999888877665100 0000111 11222222221 2 2446
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecCC--HHHHHHHHHHcCceeeeec----CCeEEEEeccCCC
Q 001990 443 LKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVVD----SNTVTASFDETTT 516 (985)
Q Consensus 443 l~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~--~~~l~~~L~~~Gi~~~~~~----~~~lris~~~~~t 516 (985)
++++.++..++.+++++.|+++| +++... ...-+.+..++ ..++.+.|.++||.++... ++.+|++++ +
T Consensus 263 ~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~---~ 337 (360)
T 3hdo_A 263 LSECCRRIRETREWFTTELRSIG-YDVIPS-QGNYLFATPPDRDGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG---T 337 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-CEECCC-SSSEEEEECTTCCHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC---C
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC-CEEcCC-CccEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC---C
Confidence 78889999999999999999986 887632 12224455554 8899999999999886532 478999987 9
Q ss_pred HHHHHHHHHHHhC
Q 001990 517 LEDVDKLFIVFAG 529 (985)
Q Consensus 517 ~edid~ll~~l~~ 529 (985)
++|+++|+++|+.
T Consensus 338 ~~e~~~l~~al~~ 350 (360)
T 3hdo_A 338 REEMEQTLAALKE 350 (360)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999974
No 251
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.71 E-value=2.9e-16 Score=181.01 Aligned_cols=282 Identities=17% Similarity=0.130 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHH----HHhcCcEEEEEeC
Q 001990 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~----~~~~G~~v~~v~~ 709 (985)
..++++.+++++|.+. .+.+++|++++..+ ++ + ..++++||+++..|+.+... ++..|++++.++.
T Consensus 69 ~~~l~~~la~~~g~~~-~i~~~sG~~ai~~~---~~-l-----~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 138 (403)
T 3cog_A 69 RNCLEKAVAALDGAKY-CLAFASGLAATVTI---TH-L-----LKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDC 138 (403)
T ss_dssp HHHHHHHHHHHHTCSE-EEEESCHHHHHHHH---HT-T-----SCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECT
T ss_pred HHHHHHHHHHHhCCCc-EEEECCHHHHHHHH---HH-H-----hCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECC
Confidence 5688999999999874 46677787655333 32 2 14678999998877643332 2468999999987
Q ss_pred CCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcC-CEEEEEccccccccCCCCCCcCCCcEE
Q 001990 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNG-GQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 710 ~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g-~lliVD~a~~~~~~g~~~~g~~g~Di~ 787 (985)
+ |+++++++++ +++++|++++| |++|.+. |+++|+++|+++| +++++|+++..+. +..|-.+++|++
T Consensus 139 ~-----d~~~l~~~i~---~~t~~v~~~~p~nptG~~~-~l~~i~~la~~~g~~~livD~~~~~~~--~~~~~~~~~div 207 (403)
T 3cog_A 139 S-----KIKLLEAAIT---PETKLVWIETPTNPTQKVI-DIEGCAHIVHKHGDIILVVDNTFMSPY--FQRPLALGADIS 207 (403)
T ss_dssp T-----SHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHTSSSCCEEEEECTTTCTT--TCCTTTTTCSEE
T ss_pred C-----CHHHHHHhcC---cCCeEEEEECCCCCCCeee-CHHHHHHHHHHcCCCEEEEECCCcccc--cCCccccCCeEE
Confidence 5 8999999997 78999999999 5799998 8999999999999 9999999986432 224445789999
Q ss_pred EeCCcccccccCCCCCCcceeeeec-ccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhchh
Q 001990 788 HLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 788 ~~s~hKtl~~p~g~GGPg~G~l~~~-~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~ 866 (985)
+.|+||+|+.| ||-.+|+++++ +++.+.+.....++ +. ..+ +. .+|+.+..+ +
T Consensus 208 ~~S~sK~~~g~---~~~~~G~v~~~~~~l~~~l~~~~~~~-------------g~-~~~----~~---~~~~~~~~l--~ 261 (403)
T 3cog_A 208 MYSATKYMNGH---SDVVMGLVSVNCESLHNRLRFLQNSL-------------GA-VPS----PI---DCYLCNRGL--K 261 (403)
T ss_dssp EEETTTTTTCS---SCCCCEEEEECCHHHHHHHHHHHHHH-------------CC-CCC----HH---HHHHHHHHH--T
T ss_pred EEcChhhccCC---CCCeEEEEEECcHHHHHHHHHHHHhc-------------CC-CCC----HH---HHHHHHhhh--h
Confidence 99999998522 22236899885 55554432110000 00 011 11 122222222 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccC---CeeEcCCC---C---------ceeEEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001990 867 GLTEASKIAILNANYMAKRLEKHY---PILFRGVN---G---------TVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 867 gl~~~~~~~~~~a~~l~~~L~~~~---~i~~~g~~---~---------~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~G 931 (985)
.+....++..+++..+.+.|++.. .+.+++-. + .....+.+.++ + ...++.+.|.+.|
T Consensus 262 ~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~------~-~~~~~~~~l~~~~ 334 (403)
T 3cog_A 262 TLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIK------G-TLQHAEIFLKNLK 334 (403)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEES------S-CHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEec------C-CHHHHHHHHHhCC
Confidence 233344555566666666665421 11111100 0 01223445553 2 2356677777788
Q ss_pred CccCCC------------------CCC--------C-CCEEEEeccCCCCHHhhchHHHHHHHHHHHH
Q 001990 932 FHGPTM------------------SWP--------V-PGTLMIEPTESESKVCHNREDLFFQILLSLT 972 (985)
Q Consensus 932 i~~~~~------------------~~p--------v-~~~lris~t~~~t~eeId~~~~~i~aL~~i~ 972 (985)
+..... ..| + ++.||+|++..+++++|+ .|.++|++++
T Consensus 335 i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~---~l~~al~~~~ 399 (403)
T 3cog_A 335 LFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLE---DLDQALKAAH 399 (403)
T ss_dssp SSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHH---HHHHHHHHHC
T ss_pred cceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHH---HHHHHHHHhh
Confidence 753110 001 1 478999999999988888 8888877653
No 252
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.71 E-value=2.8e-16 Score=177.04 Aligned_cols=278 Identities=12% Similarity=0.051 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC
Q 001990 208 GRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD 287 (985)
Q Consensus 208 g~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~ 287 (985)
|..+...++++.+++++|.+..++.+++|||.+++.++.++. ++||+|++++..|+++.... .++..|++++.++
T Consensus 46 g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~---~~gd~vl~~~~~~~~~~~~~--~~~~~g~~~~~v~ 120 (359)
T 1svv_A 46 GQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLAL---RPWEAVIATQLGHISTHETG--AIEATGHKVVTAP 120 (359)
T ss_dssp TCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHC---CTTEEEEEETTSHHHHSSTT--HHHHTTCCEEEEC
T ss_pred cccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHh---CCCCEEEEcccchHHHHHHH--HHhcCCCeeEEEe
Confidence 334556678889999999888889899999998888776653 27899999999999887630 0223577887776
Q ss_pred c-------hhhhc-cCCC-------EeEEEEEcCCCCeeecc---HHHHHHHHHhCCcEEEEEeccc---cccCCCCCCc
Q 001990 288 L-------KDIDY-KSGD-------VCGVLVQYPGTEGEVLD---YGDFIKNAHANGVKVVMATDLL---ALTILKPPGE 346 (985)
Q Consensus 288 ~-------~~l~~-l~~~-------t~~V~v~~pn~~G~i~d---l~~I~~~a~~~galliV~a~~~---alg~l~~p~~ 346 (985)
. ++|++ ++++ +++|++++||++|.+.| +++|.++|+++|+++++|. .. +++.+.....
T Consensus 121 ~~~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~~ptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~ 199 (359)
T 1svv_A 121 CPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDG-ARLASALSSPVNDLT 199 (359)
T ss_dssp CTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEEC-TTHHHHHTSTTCCCC
T ss_pred CCCCeecHHHHHHHHHHHHhccCCCceEEEEEcCCCCceecCHHHHHHHHHHHHHhCCEEEEEc-cchhhhhcCCCcchh
Confidence 4 44555 5443 89999999998999987 9999999999999999953 33 3343322222
Q ss_pred -----ccceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCcc
Q 001990 347 -----LGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNIC 421 (985)
Q Consensus 347 -----~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~ 421 (985)
.++|+++.++.+++.| .+.|++++++++++.+.... ...++.+-.
T Consensus 200 ~~~~~~~~d~~~~s~~K~g~~-----~~~g~l~~~~~~~~~~~~~~-------------------------~~~~~~~~~ 249 (359)
T 1svv_A 200 LADIARLTDMFYIGATKAGGM-----FGEALIILNDALKPNARHLI-------------------------KQRGALMAK 249 (359)
T ss_dssp HHHHHHHCSEEEEECTTTTCS-----SCEEEEECSGGGCTTHHHHH-------------------------HHTTCCCTT
T ss_pred hhhhhhcCCEEEEecccCCCC-----CceEEEEEcccHHHHHHHHH-------------------------hcCCccccc
Confidence 5789999888545433 24689998887655431100 000100000
Q ss_pred chhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecCCHHHHHHHHHHc-Cceee
Q 001990 422 TAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKI-EMNLR 500 (985)
Q Consensus 422 t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~L~~~-Gi~~~ 500 (985)
+.....++ ...+..++++++.++..++.+++.+.|+..| +++..+....-+.+.. ..++.++|.++ ||.+.
T Consensus 250 ~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~--~~~~~~~l~~~~gi~v~ 321 (359)
T 1svv_A 250 GWLLGIQF-----EVLMKDNLFFELGAHSNKMAAILKAGLEACG-IRLAWPSASNQLFPIL--ENTMIAELNNDFDMYTV 321 (359)
T ss_dssp THHHHHHH-----HHHTSTTHHHHHHHHHHHHHHHHHHHHHHTT-CCBSSCCSSSEECBEE--EHHHHHHHTTTEECEEE
T ss_pred chhhHHHH-----HHHHhhhhHHHHHHHHHHHHHHHHHHhccCC-eEEccCCccceEEEEc--CHHHHHHHHHhcCEEEE
Confidence 00111111 2345556788899999999999999995445 7776332221222233 25788999988 99873
Q ss_pred ee---cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 501 VV---DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 501 ~~---~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.. .++.+|++++..++++|+++++++|..
T Consensus 322 ~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 353 (359)
T 1svv_A 322 EPLKDGTCIMRLCTSWATEEKECHRFVEVLKR 353 (359)
T ss_dssp EEETTTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred ecccCCCceEEEEccCcCCHHHHHHHHHHHHH
Confidence 32 236899999999999999999999974
No 253
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.71 E-value=1.5e-15 Score=173.18 Aligned_cols=271 Identities=11% Similarity=0.083 Sum_probs=187.0
Q ss_pred HHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-----
Q 001990 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----- 288 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~----- 288 (985)
.++++.+++++|.++.++.+++|+|.+++.++.++ .. +||+|++++..|+++...++ ..|++++.++.
T Consensus 64 ~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~-~~--~gd~Vl~~~~~~~~~~~~~~----~~g~~~~~v~~~~~~~ 136 (381)
T 1v2d_A 64 PALREALAEEFAVEPESVVVTSGATEALYVLLQSL-VG--PGDEVVVLEPFFDVYLPDAF----LAGAKARLVRLDLTPE 136 (381)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH-CC--TTCEEEEEESCCTTHHHHHH----HTTCEEEEEECEEETT
T ss_pred HHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHh-CC--CCCEEEEcCCCchhHHHHHH----HcCCEEEEEeCCCCCc
Confidence 45778999999998888989999999888877665 23 78999999999999887664 35777766543
Q ss_pred ------hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEeccccccCCCC----CC--cccceE
Q 001990 289 ------KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILKP----PG--ELGADI 351 (985)
Q Consensus 289 ------~~l~~-l~~~t~~V~v~~p-n~~G~i~d---l~~I~~~a~~~galliV~a~~~alg~l~~----p~--~~GaDi 351 (985)
+++++ +++++++|++++| |.+|.+.+ +++|+++|+++|+++++|. ..+...... .. .++.|+
T Consensus 137 ~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~g~~~~~~~~~~~~~~~ 215 (381)
T 1v2d_A 137 GFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDE-VYDELYYGERPRRLREFAPERTF 215 (381)
T ss_dssp EEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC-TTTTCBSSSCCCCHHHHCTTTEE
T ss_pred cCCcCHHHHHHhcCcCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEc-CccccccCCCCCCHHHhcCCCEE
Confidence 34555 7788999999988 67998864 8999999999999999953 333221111 11 358999
Q ss_pred EEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHH
Q 001990 352 VVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANM 430 (985)
Q Consensus 352 ~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~ 430 (985)
+++|. |.|+.| |..+|++++++++++.+... + + ....+.|. ....++.
T Consensus 216 ~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~~~~--------------------~-~---~~~~~~~~---~~~~a~~ 264 (381)
T 1v2d_A 216 TVGSAGKRLEAT----GYRVGWIVGPKEFMPRLAGM--------------------R-Q---WTSFSAPT---PLQAGVA 264 (381)
T ss_dssp EEEEHHHHTTCG----GGCCEEEECCTTTHHHHHHH--------------------H-H---HHTSSCCH---HHHHHHH
T ss_pred EEeechhhcCCc----ccceEEEEeCHHHHHHHHHH--------------------H-h---hcccCCCc---HHHHHHH
Confidence 99998 877532 23379999887776554100 0 0 00111111 1222222
Q ss_pred HHHHHHHc-CcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecCCHHHHHHHHHHcCceeeee-------
Q 001990 431 AAMYAVYH-GPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNLRVV------- 502 (985)
Q Consensus 431 aa~y~~~~-g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~L~~~Gi~~~~~------- 502 (985)
+++ ... ..++++++.++..++.+++.+.|++.| +++.......-+.+..+.. ++.+.|.++||.+...
T Consensus 265 ~~l--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~-~~~~~l~~~gi~v~~g~~~~~~~ 340 (381)
T 1v2d_A 265 EAL--KLARREGFYEALREGYRRRRDLLAGGLRAMG-LRVYVPEGTYFLMAELPGW-DAFRLVEEARVALIPASAFYLED 340 (381)
T ss_dssp HHH--HHHHHTTHHHHHHHHHHHHHHHHHHHHHHTT-CCEECCSBSSEEEEECTTC-CHHHHHHHTCEECEEGGGGCSSS
T ss_pred HHH--hCcccHHHHHHHHHHHHHHHHHHHHHHHHCC-CEecCCCcceEEEEecChH-hHHHHHHhCCEEEecchHhCCCC
Confidence 332 211 156788999999999999999999886 8776432111234455432 2677778899987542
Q ss_pred -cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 503 -DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.++.+|++++. ++++++++++.|..
T Consensus 341 ~~~~~iRi~~~~--~~~~i~~~~~~l~~ 366 (381)
T 1v2d_A 341 PPKDLFRFAFCK--TEEELHLALERLGR 366 (381)
T ss_dssp CCTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCC--CHHHHHHHHHHHHH
Confidence 24789999986 89999999999974
No 254
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.71 E-value=3.6e-16 Score=181.27 Aligned_cols=302 Identities=12% Similarity=0.095 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHhCCCccceecChHHH-HHHHHHHHHHHHHHhc---CCC-----CCCEEEEcCCCCCCcHHHHHhcCcEE
Q 001990 634 FNNLGEWLCTITGFDSFSLQPNAGAA-GEYAGLMVIRAYHKAR---GDH-----HRNVCIIPVSAHGTNPATAAMCGMKI 704 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~~~~~~sGa~-g~~a~l~air~~~~~~---g~~-----~~~~Vlv~~~~Hg~~~~~~~~~G~~v 704 (985)
..++++.+++++|.+...+.+++|++ +.. ..++++.+. .. |.. .+++|+++.+.|..+...++..|+++
T Consensus 78 ~~~lr~~ia~~~~~~~~~i~~t~G~~~al~-l~~~~~~l~-~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~ 155 (422)
T 3d6k_A 78 IADIRELWAEALGLPADLVVAQDGSSLNIM-FDLISWSYT-WGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEM 155 (422)
T ss_dssp CHHHHHHHHHHHTCCGGGEEECSSCHHHHH-HHHHHHHHH-HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEE
T ss_pred CHHHHHHHHHHhCCChhHEEEecchHHHHH-HHHHHHHhc-CcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEE
Confidence 34688889999998876655555543 331 012223221 11 100 13479998887766666677889999
Q ss_pred EEEeCCCCCCCCHHHHHHHHHhcCCCeEEEE-EEcC-CCccccccCH---HHHHHHHH-HcCCEEEEEccccc-cccC--
Q 001990 705 VSVGTDAKGNINIEELRKAAEANRDNLSTLM-VTYP-STHGVYEEGI---DEICKIIH-DNGGQVYMDGANMN-AQVG-- 775 (985)
Q Consensus 705 ~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vv-i~~p-n~~G~i~~di---~eI~~la~-~~g~lliVD~a~~~-~~~g-- 775 (985)
+.+|.+++| +|+++|++++++ .++++|+ +++| |++|.+. +. ++|+++|+ ++|+++|+|+++.. .+..
T Consensus 156 ~~v~~~~~g-~d~~~l~~~l~~--~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~ 231 (422)
T 3d6k_A 156 INVPMTDEG-PDMGVVRELVKD--PQVKGMWTVPVFGNPTGVTF-SEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEF 231 (422)
T ss_dssp EEEEEETTE-ECHHHHHHHHTS--TTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCC
T ss_pred EecCCCCCC-CCHHHHHHHHhc--CCCeEEEEcCCCCCCCCCCC-CHHHHHHHHHHHhhccCCEEEEECCccccccCCCC
Confidence 999997766 999999999972 3788888 5677 5799987 44 58888888 89999999999852 1211
Q ss_pred --CCCC-------CcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCccccc
Q 001990 776 --LTSP-------GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAP 846 (985)
Q Consensus 776 --~~~~-------g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~ 846 (985)
.... +..+.++++.|++|+ +. .|.++|++++++++++.+...... .+.+. +
T Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~----~GlriG~~~~~~~l~~~l~~~~~~------------~~~~~--~- 291 (422)
T 3d6k_A 232 PIVHNVIEFAQAAGNPNRFWFMSSTSKI-TH----AGSGVSFFASSKENIEWYASHANV------------RGIGP--N- 291 (422)
T ss_dssp CCCCCHHHHHHHTTCTTCEEEEEESTTT-SC----TTSSCEEEECCHHHHHHHHHHHHH------------HCSCC--C-
T ss_pred CCCcChhhHhhccCCCCcEEEEcChhhh-cC----cccceEEEEeCHHHHHHHHHHHHh------------hcCCC--C-
Confidence 0011 123456888888997 33 367899999988776544211000 00011 1
Q ss_pred chhhhHHHHHHHHHHHhc--hhhHHHHHHHHHHHHHHHHHHHhcc---CC-eeEcCCCCceeEEEEEEecCccccCCCCH
Q 001990 847 WGSALILPISYTYIAMMG--SKGLTEASKIAILNANYMAKRLEKH---YP-ILFRGVNGTVAHEFIVDLRGLKNTAGIEP 920 (985)
Q Consensus 847 ~g~~~~~~~A~a~l~~lg--~~gl~~~~~~~~~~a~~l~~~L~~~---~~-i~~~g~~~~~~~~~vv~~~~~~~~~g~~~ 920 (985)
.....++.+++...+ .+-+.+..+...++.+++.+.|.+. .+ +.+..+.+..+ +.++++ +.+.
T Consensus 292 ---~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~--~~~~~~------~~~~ 360 (422)
T 3d6k_A 292 ---KLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYF--ISVDVV------PGTA 360 (422)
T ss_dssp ---HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSC--EEEEES------TTCH
T ss_pred ---HHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceE--EEEECC------CCCH
Confidence 111112222222111 1223333444455666777777541 11 22222222222 345554 1256
Q ss_pred HHHHHHHHHCCCccCCC--CCC-----CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHH
Q 001990 921 EDVAKRLMDYGFHGPTM--SWP-----VPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 921 ~~l~~~L~e~Gi~~~~~--~~p-----v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
..+.+.|.++||.+... .++ ..+.+|++++. ++++|++ ++++.|+++++++.
T Consensus 361 ~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~-~~~e~i~---~~~~~l~~~l~~~~ 419 (422)
T 3d6k_A 361 SRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL-PPVAELE---VAMDGFATCVLMAA 419 (422)
T ss_dssp HHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS-SCHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCC-CCHHHHH---HHHHHHHHHHHHHH
Confidence 78888999999997542 132 24789999987 8999999 99999999887654
No 255
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.71 E-value=1.1e-15 Score=173.67 Aligned_cols=278 Identities=15% Similarity=0.132 Sum_probs=189.3
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~---- 288 (985)
..++++.+|+++|.+ ++.++++||.++++++.+++.. +||+|+++...|+++...++. .|++++.++.
T Consensus 40 ~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~~~~~~~~--~gd~v~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~ 111 (374)
T 3uwc_A 40 LEKFEKRFAALHNAP--HAIGVGTGTDALAMSFKMLNIG--AGDEVITCANTFIASVGAIVQ----AGATPVLVDSENGY 111 (374)
T ss_dssp HHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTTCC--TTCEEEEESSSCHHHHHHHHH----TTCEEEEECBCTTS
T ss_pred HHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCCC--CCCEEEECCCccHHHHHHHHH----cCCEEEEEecCCCC
Confidence 456889999999987 4778899998888877766433 789999999999999888653 5888888764
Q ss_pred ----hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCCCCccc--ceEEEecC---cc
Q 001990 289 ----KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELG--ADIVVGSA---QR 358 (985)
Q Consensus 289 ----~~l~~-l~~~t~~V~v~~pn~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~p~~~G--aDi~v~s~---k~ 358 (985)
+++++ +++++++|+++ |++|.+.|+++|.++|+++|+++++| +..+.|.......+| +|+++.|+ |.
T Consensus 112 ~~d~~~l~~~~~~~~~~v~~~--n~~G~~~~~~~i~~~~~~~~~~li~D-~~~~~g~~~~~~~~~~~~d~~~~s~~~~K~ 188 (374)
T 3uwc_A 112 VIDPEKIEAAITDKTKAIMPV--HYTGNIADMPALAKIAKKHNLHIVED-ACQTILGRINDKFVGSWGQFACFSLHPLKN 188 (374)
T ss_dssp SBCGGGTGGGCCTTEEEECCB--CGGGCCCCHHHHHHHHHHTTCEEEEE-CTTCTTCEETTEETTSSSSEEEEECSSSSS
T ss_pred CcCHHHHHHhCCCCceEEEEe--CCcCCcCCHHHHHHHHHHcCCEEEEe-CCCccCceeCCeeccccccEEEEeCCCCCc
Confidence 34555 77889988833 57899999999999999999999995 344554322222334 69999883 55
Q ss_pred ccccCCCCCCceEEEEEch-hhHhcCCCce-eeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHH
Q 001990 359 FGVPMGYGGPHAAFLATSQ-EYKRMMPGRI-VGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAV 436 (985)
Q Consensus 359 lg~P~~~GGP~~G~l~~~~-~~~~~lp~~~-vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~ 436 (985)
|++ .+ ..|++.+++ ++.+.+.... .|.. ..|.. ...+.|. .+.++.+++ .
T Consensus 189 l~~-~g----~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~-----------~~~~~~~----~~~~~~aa~--~ 240 (374)
T 3uwc_A 189 LNV-WS----DAGVIITHSDEYAEKLRLYRNHGLI------NRDVC-----------VEYGINC----RMDTIQAVI--A 240 (374)
T ss_dssp SCC-SS----CCEEEEESCHHHHHHHHHHTBTTEE------ETTEE-----------SSCCCBC----BCCHHHHHH--H
T ss_pred CCc-cc----eeEEEEeCCHHHHHHHHHHHhcCcc------ccCcc-----------ccccccC----CCCHHHHHH--H
Confidence 542 11 246777654 4544332111 0100 00110 0011121 111223333 2
Q ss_pred HcCcchHHHHHHHHHHHHHHHHHHHhcCCC-EEEcCC-----CCcceEEEecCCHHHHHHHHHHcCceeeeec-------
Q 001990 437 YHGPEGLKTIAQRVHGLAGTFALGLKKLGT-VEVQGL-----PFFDTVKVKCADAHAIASAAYKIEMNLRVVD------- 503 (985)
Q Consensus 437 ~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~-~~~~~~-----~~~~~~~i~~~~~~~l~~~L~~~Gi~~~~~~------- 503 (985)
+...++++++.++..++++++++.|+++++ +++... +.+..+.+..+...++.+.|.++||.++...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~~~~~ 320 (374)
T 3uwc_A 241 NRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVKYRDQLFQYLKDNGIEVKIHYPIAMHLQ 320 (374)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEETTHHHHHHHHHHTTBCCBCSCSSCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcCCHHHHHHHHHHCCCccccCCCCccccC
Confidence 223467888999999999999999999876 776532 1223355554458889999999999764321
Q ss_pred --------------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 504 --------------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 --------------------~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.+.+|++++..+|++||++++++|..
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~ 366 (374)
T 3uwc_A 321 PAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVRE 366 (374)
T ss_dssp GGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred hhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHH
Confidence 16799999999999999999999974
No 256
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.71 E-value=8.6e-16 Score=179.70 Aligned_cols=299 Identities=12% Similarity=0.128 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHHhC-CCc-cceecChHHHHHHHHHHHHHHHHHhc----C--CCCCCEEEEcC-CCCCCcHHHHHh----
Q 001990 633 MFNNLGEWLCTITG-FDS-FSLQPNAGAAGEYAGLMVIRAYHKAR----G--DHHRNVCIIPV-SAHGTNPATAAM---- 699 (985)
Q Consensus 633 ~~~el~~~la~l~G-~~~-~~~~~~sGa~g~~a~l~air~~~~~~----g--~~~~~~Vlv~~-~~Hg~~~~~~~~---- 699 (985)
...++++.++++++ .+. ..++.++|++++++++.+++.|...+ | ..++++||+.+ .+|+.....+..
T Consensus 102 ~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~ 181 (449)
T 2cjg_A 102 AMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTK 181 (449)
T ss_dssp HHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCc
Confidence 45678889999986 222 34777899999888887777654311 1 11267888866 577755433222
Q ss_pred ----cCc-----EEEEEeCCC--CC--------CCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccC----HHHHHHH
Q 001990 700 ----CGM-----KIVSVGTDA--KG--------NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG----IDEICKI 755 (985)
Q Consensus 700 ----~G~-----~v~~v~~~~--~g--------~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~d----i~eI~~l 755 (985)
.++ +++.+|.++ .. ..|+++|+++++++.+++++|+++.+ |++|.+. + +++|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~-~~~~~l~~l~~l 260 (449)
T 2cjg_A 182 PTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRH-FRPEFFAAMREL 260 (449)
T ss_dssp HHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEE-CCHHHHHHHHHH
T ss_pred hhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCcc-CCHHHHHHHHHH
Confidence 222 566777654 11 25677799999755468888776544 5689665 5 9999999
Q ss_pred HHHcCCEEEEEccccccccCCCCC---C--cCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCC
Q 001990 756 IHDNGGQVYMDGANMNAQVGLTSP---G--YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI 830 (985)
Q Consensus 756 a~~~g~lliVD~a~~~~~~g~~~~---g--~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~ 830 (985)
|++||+++|+|++|. +++-.... . ...+|+++++ |+| | +|++++++++.+.+.+...+..
T Consensus 261 ~~~~g~lli~DEv~~-g~g~~g~~~~~~~~~~~~di~t~s--K~l--~-------iG~~~~~~~~~~~l~~~~~~~~--- 325 (449)
T 2cjg_A 261 CDEFDALLIFDEVQT-GCGLTGTAWAYQQLDVAPDIVAFG--KKT--Q-------VCGVMAGRRVDEVADNVFAVPS--- 325 (449)
T ss_dssp HHHTTCEEEEECTTT-TTTTTSSSSTHHHHTCCCSEEEEC--GGG--S-------SEEEEECGGGGGSTTCTTTSTT---
T ss_pred HHHCCcEEEEecccc-CCCccCcceeecccCCCceEEEec--Ccc--c-------EEEEEECHHHhhhhhhcccCCc---
Confidence 999999999999985 22111111 0 1346888664 877 2 6778888888775432111100
Q ss_pred CCCCCCCCCCCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc---CC--ee-EcCCCCceeEE
Q 001990 831 PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YP--IL-FRGVNGTVAHE 904 (985)
Q Consensus 831 ~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~---~~--i~-~~g~~~~~~~~ 904 (985)
.... ..+ +++..+.++.+.+..+.++++ .++..++.++++++|++. +. +. ..+ .+. .
T Consensus 326 ----~~~~--t~~----~n~~~~~aa~aal~~~~~~~~---~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~-~g~---~ 388 (449)
T 2cjg_A 326 ----RLNS--TWG----GNLTDMVRARRILEVIEAEGL---FERAVQHGKYLRARLDELAADFPAVVLDPRG-RGL---M 388 (449)
T ss_dssp ----SSCC--SSS----SCHHHHHHHHHHHHHHHHHTH---HHHHHHHHHHHHHHHHHHHHHSTTTSEEEEE-ETT---E
T ss_pred ----cccc--CCC----CCHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHHHHhhCCCceeeEee-ccE---E
Confidence 0001 111 233344445566665544433 356667788888888752 33 21 111 122 2
Q ss_pred EEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 905 FIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 905 ~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
+.+++.. ..+..++.+.|.++||.+.... .+.||++++..+|++||| ++++.|+++++++
T Consensus 389 ~~~~~~~-----~~~~~~~~~~l~~~Gv~v~~~g---~~~iRi~~~~~~t~e~i~---~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 389 CAFSLPT-----TADRDELIRQLWQRAVIVLPAG---ADTVRFRPPLTVSTAEID---AAIAAVRSALPVV 448 (449)
T ss_dssp EEEECSS-----HHHHHHHHHHHHHTTEECEEET---TTEEEECCCTTCCHHHHH---HHHHHHHHHHHHH
T ss_pred EEEEECC-----hHHHHHHHHHHHHCCeEEecCC---CCEEEEECCCCCCHHHHH---HHHHHHHHHHHHh
Confidence 3345531 1135679999999999875332 378999999999999999 9999999887653
No 257
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.71 E-value=7.8e-16 Score=178.79 Aligned_cols=313 Identities=16% Similarity=0.185 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHHhCCCcc-ceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCCCcHHHHHhcCc-------
Q 001990 632 EMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPATAAMCGM------- 702 (985)
Q Consensus 632 ~~~~el~~~la~l~G~~~~-~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~-~~Hg~~~~~~~~~G~------- 702 (985)
+...+++++++++++.+.. .++.++|+++++.++.+++.++..+|..++++||+.+ .+|+.........+.
T Consensus 72 ~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~ 151 (430)
T 3i4j_A 72 DVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELY 151 (430)
T ss_dssp HHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC---------------------
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCcccccccc
Confidence 3466788999999986543 4677889999888888887776666655577888755 455544333222221
Q ss_pred -------EEEEEeCCCC---CCCCHHHHHHHHHhcC-CCeEEEEEEcC-C-CccccccC----HHHHHHHHHHcCCEEEE
Q 001990 703 -------KIVSVGTDAK---GNINIEELRKAAEANR-DNLSTLMVTYP-S-THGVYEEG----IDEICKIIHDNGGQVYM 765 (985)
Q Consensus 703 -------~v~~v~~~~~---g~iDle~L~~~i~~~~-~~t~~Vvi~~p-n-~~G~i~~d----i~eI~~la~~~g~lliV 765 (985)
++..+|.+.. +..|+++|++++++++ +++++|+++.+ + +.|.+. + +++|+++|++||+++|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~-~~~~~l~~l~~l~~~~~~~li~ 230 (430)
T 3i4j_A 152 TPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALA-PAPGYYERVRDICDEAGIIFIA 230 (430)
T ss_dssp ----CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCC-CCTTHHHHHHHHHHHHTCEEEE
T ss_pred CCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCccc-CCHHHHHHHHHHHHHcCCEEEE
Confidence 2334444322 3357799999997543 34555555433 4 567665 4 99999999999999999
Q ss_pred Ecccc-ccccCC-CCCC---cCCCcEEEeCCcccccccCCCCC-CcceeeeecccccCcCCCCccccCCCCCCCCCCCCC
Q 001990 766 DGANM-NAQVGL-TSPG---YIGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPL 839 (985)
Q Consensus 766 D~a~~-~~~~g~-~~~g---~~g~Di~~~s~hKtl~~p~g~GG-Pg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t 839 (985)
|++|. .+..+. .... ....|+++++ |+|+ +| .++|++++++++++.+.... +. ...+
T Consensus 231 DEv~~~~~~~g~~~~~~~~~~~~~di~t~s--K~l~-----~G~~r~G~~~~~~~i~~~~~~~~-~~--------~~~~- 293 (430)
T 3i4j_A 231 DEVMSGMGRCGSPLALSRWSGVTPDIAVLG--KGLA-----AGYAPLAGLLAAPQVYETVMGGS-GA--------FMHG- 293 (430)
T ss_dssp ECTTTTTTTTSSSSGGGGTTTCCCSEEEEC--GGGT-----TTSSCCEEEEECHHHHHHHHHTT-CB--------CCCC-
T ss_pred echhhCCCcccchhhhhhhcCCCCcEEEEc--cccc-----CCccccEEEEECHHHHHHHhccC-Cc--------cccc-
Confidence 99874 111110 0001 1236787654 8874 36 77899999987765542110 00 0000
Q ss_pred CCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc---cCC-eeEcCCCCceeEEEEEEecCcccc
Q 001990 840 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---HYP-ILFRGVNGTVAHEFIVDLRGLKNT 915 (985)
Q Consensus 840 ~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~---~~~-i~~~g~~~~~~~~~vv~~~~~~~~ 915 (985)
.+.+ +++..++++.+++..+..+.+ .++..++.+++++.|.+ .+. +....+.+.+ +.+.+......
T Consensus 294 ~t~~----~~~~~~aaa~aal~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~ 363 (430)
T 3i4j_A 294 FTYA----GHPVSVAAGLSVLDIVEREDL---TGAAKERGAQLLAGLQALQARFPQMMQVRGTGLL---LGVVLGDLATG 363 (430)
T ss_dssp CTTT----TCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTE---EEEEEC-----
T ss_pred CCCC----CCHHHHHHHHHHHHHHHcccH---HHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEE---EEEEecccccc
Confidence 0111 133444455566665544443 34455566667766654 122 2111111222 22333210000
Q ss_pred C----CCCHHHHHHHHHHCCCccCCCCCC----CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 916 A----GIEPEDVAKRLMDYGFHGPTMSWP----VPGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 916 ~----g~~~~~l~~~L~e~Gi~~~~~~~p----v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
. .....++.+.|.++|+.+....++ ..+.+||+++...|++|++ +++++|+++++++
T Consensus 364 ~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~---~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 364 QAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVD---GLLALLAGALEDV 428 (430)
T ss_dssp -------CHHHHHHHHHHTTEECC-----------CEEEECCCTTCCHHHHH---HHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEECCCCCCHHHHH---HHHHHHHHHHHHh
Confidence 0 112467999999999987543211 1478999999999999999 9999999988754
No 258
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.71 E-value=3.9e-16 Score=181.09 Aligned_cols=295 Identities=16% Similarity=0.063 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe-Cc--
Q 001990 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS-DL-- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~-~~-- 288 (985)
...++++.+|+++|.+. ..++.+||.++++++.++ +. +||+||++...|+++...+..+++..|++++.+ +.
T Consensus 59 ~~~~l~~~la~~~g~~~--~v~~~sGt~A~~~~l~~~-~~--~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d 133 (421)
T 2ctz_A 59 TVDVLEKRLAALEGGKA--ALATASGHAAQFLALTTL-AQ--AGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREER 133 (421)
T ss_dssp HHHHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHH-CC--TTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCC
T ss_pred HHHHHHHHHHHHhCCCc--eEEecCHHHHHHHHHHHH-hC--CCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCC
Confidence 35568889999999874 457788888888776654 23 789999999999999998865556679999999 65
Q ss_pred -hhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccc-cccCCCCCCcccceEEEecC-ccccccC
Q 001990 289 -KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLL-ALTILKPPGELGADIVVGSA-QRFGVPM 363 (985)
Q Consensus 289 -~~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~-alg~l~~p~~~GaDi~v~s~-k~lg~P~ 363 (985)
+++++ ++++|++|++++| |.+|.+.|+++|+++||++|+++++| +.. +.|....+..+|+|++++|. |.|++|
T Consensus 134 ~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD-~~~~~~g~~~~~~~~~~Di~~~s~~K~l~~~- 211 (421)
T 2ctz_A 134 PEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVD-NTFGMGGYLLRPLAWGAALVTHSLTKWVGGH- 211 (421)
T ss_dssp HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEE-CGGGGGGTSCCGGGGTCSEEEEETTTTTTCS-
T ss_pred HHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEE-CCcccccccCCccccCCeEEEECCcccccCC-
Confidence 55666 7889999999987 78999999999999999999999995 345 56654456678999999998 888654
Q ss_pred CCCCCceEEEEEch--hh----HhcCCCceeeeeecCCCCcceEEecccc--cccccccccCCCcc--chhHHHHHHHHH
Q 001990 364 GYGGPHAAFLATSQ--EY----KRMMPGRIVGVSIDSSGKPALRVAMQTR--EQHIRRDKATSNIC--TAQALLANMAAM 433 (985)
Q Consensus 364 ~~GGP~~G~l~~~~--~~----~~~lp~~~vG~s~d~~g~~~~~l~l~tr--e~~~rre~atsni~--t~~~l~a~~aa~ 433 (985)
|+|-.|+++.++ ++ .+.+.+...|+. |.. +.-..... ....|++. .+.. ...++ .+
T Consensus 212 --g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~----g~~-~~~~~~~~~~~~~~r~~~--~~~~g~~~~~~---~a-- 277 (421)
T 2ctz_A 212 --GAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYH----GLR-LTEAFGELAFIVKARVDG--LRDQGQALGPF---EA-- 277 (421)
T ss_dssp --SCCCCEEEEECSCSCCTTTTCHHHHSCBGGGT----TBC-HHHHHGGGHHHHHHHHTH--HHHHCCCCCHH---HH--
T ss_pred --CCcEEEEEEeccchhhcccchhhhccccchhh----hhh-hhhhcchhHHHHHHHHHH--HHhcCCCCCHH---HH--
Confidence 222234554422 22 222322222210 000 00000000 00111110 0000 00111 11
Q ss_pred HHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcC--C----------------CCcceEEEecCC-HHHHHHHHHH
Q 001990 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG--L----------------PFFDTVKVKCAD-AHAIASAAYK 494 (985)
Q Consensus 434 y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~--~----------------~~~~~~~i~~~~-~~~l~~~L~~ 494 (985)
|+...+.+-+....++..+++.++.+.|+++.+++.+. . .....++|.+++ ..+..+.+.+
T Consensus 278 ~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~~~~~~~~~~~~ 357 (421)
T 2ctz_A 278 WVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISR 357 (421)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHHHHHHT
T ss_pred HHHHcCcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHh
Confidence 11222333445556666799999999999984487652 1 112357777765 3344444433
Q ss_pred c---Cceeee---------------------------ecCCeEEEEeccCCCHHHHHHHHHHH
Q 001990 495 I---EMNLRV---------------------------VDSNTVTASFDETTTLEDVDKLFIVF 527 (985)
Q Consensus 495 ~---Gi~~~~---------------------------~~~~~lris~~~~~t~edid~ll~~l 527 (985)
. ++.++. +.++.||+|++..+.++.++.|.++|
T Consensus 358 l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~e~~~~li~~l~~al 420 (421)
T 2ctz_A 358 LKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGLEHVEDLKAELKEAL 420 (421)
T ss_dssp CSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHT
T ss_pred CCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCCCCHHHHHHHHHHHh
Confidence 2 221110 12478999999987777777776665
No 259
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.71 E-value=7.6e-17 Score=185.31 Aligned_cols=279 Identities=14% Similarity=0.135 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHH----HHHhcCcEEEEEe
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVG 708 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~----~~~~~G~~v~~v~ 708 (985)
...++++.+++++|.+. .+++++|++++.. +++ +. .++++||++...|+.... .++..|++++.+|
T Consensus 56 ~~~~lr~~la~~~g~~~-~i~~~sGt~a~~~---al~-~~-----~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~ 125 (393)
T 1n8p_A 56 NRENLERAVAALENAQY-GLAFSSGSATTAT---ILQ-SL-----PQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN 125 (393)
T ss_dssp HHHHHHHHHHHHTTCSE-EEEESCHHHHHHH---HHH-TS-----CSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEES
T ss_pred hHHHHHHHHHHHhCCCc-EEEECChHHHHHH---HHH-Hc-----CCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeC
Confidence 46789999999999884 5667778765533 333 21 367899998876653222 2345799999998
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHc----CCEEEEEccccccccCCCCCCcCC
Q 001990 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDN----GGQVYMDGANMNAQVGLTSPGYIG 783 (985)
Q Consensus 709 ~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~----g~lliVD~a~~~~~~g~~~~g~~g 783 (985)
++ | ++|+++++ ++|++|++++| |++|.+. |+++|+++|+++ |+++|+|++|..+.. ..+..++
T Consensus 126 ~~-----d-~~l~~~i~---~~t~lv~~~~~~nptG~~~-~l~~i~~la~~~~~~~~~~livD~a~~~~~~--~~~~~~~ 193 (393)
T 1n8p_A 126 DL-----L-NDLPQLIK---ENTKLVWIETPTNPTLKVT-DIQKVADLIKKHAAGQDVILVVDNTFLSPYI--SNPLNFG 193 (393)
T ss_dssp SH-----H-HHHHHHSC---SSEEEEEECSSCTTTCCCC-CHHHHHHHHHHHTTTTTCEEEEECTTTHHHH--CCGGGGT
T ss_pred CC-----h-HHHHHhcc---cCceEEEEECCCCCcceec-CHHHHHHHHHHhCCCCCCEEEEeCCcccccc--CCHHHcC
Confidence 75 7 89999887 78999999998 5799998 899999999999 999999999964432 2455678
Q ss_pred CcEEEeCCcccccccCCCCCCc--c-eeeeec-ccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHH
Q 001990 784 ADVCHLNLHKTFCIPHGGGGPG--M-GPIGVK-KHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 784 ~Di~~~s~hKtl~~p~g~GGPg--~-G~l~~~-~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~ 859 (985)
+|++++|+||+|+ |+| + |+++++ +++.+.+.... . ..+. .. + +. .+++.
T Consensus 194 ~di~~~S~sK~~g------~~G~rigG~~~~~~~~~~~~l~~~~--~---------~~g~-~~-~-----~~---~~~~~ 246 (393)
T 1n8p_A 194 ADIVVHSATKYIN------GHSDVVLGVLATNNKPLYERLQFLQ--N---------AIGA-IP-S-----PF---DAWLT 246 (393)
T ss_dssp CSEEEEETTTTTT------CSSCCCCEEEEESCHHHHHHHHHHH--H---------HHCC-CC-C-----HH---HHHHH
T ss_pred CeEEEEECccccc------CCCCceeEEEEeCCHHHHHHHHHHH--H---------hcCC-CC-C-----HH---HHHHH
Confidence 9999999999884 333 5 888885 55554432100 0 0010 00 0 11 11222
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHhccCC-e---eEcCCC---C---------c-e-eEEEEEEecCccccCCC--C
Q 001990 860 IAMMGSKGLTEASKIAILNANYMAKRLEKHYP-I---LFRGVN---G---------T-V-AHEFIVDLRGLKNTAGI--E 919 (985)
Q Consensus 860 l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~~~-i---~~~g~~---~---------~-~-~~~~vv~~~~~~~~~g~--~ 919 (985)
+..+ +.+....++..++++++.+.|++... + .+++-. . . . .+.+.+.+. +. +
T Consensus 247 ~~~l--~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~------~~~~~ 318 (393)
T 1n8p_A 247 HRGL--KTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIK------GGAEA 318 (393)
T ss_dssp HHHH--TTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEES------SCHHH
T ss_pred Hhcc--chHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeC------CcHHH
Confidence 2222 23444555666777888888876322 2 122100 0 0 1 223445553 21 2
Q ss_pred HHHHHHHHHHCCCccCC------------CCC-----------CC-CCEEEEeccCCCCHHhhchHHHHHHHHHHH
Q 001990 920 PEDVAKRLMDYGFHGPT------------MSW-----------PV-PGTLMIEPTESESKVCHNREDLFFQILLSL 971 (985)
Q Consensus 920 ~~~l~~~L~e~Gi~~~~------------~~~-----------pv-~~~lris~t~~~t~eeId~~~~~i~aL~~i 971 (985)
...+.+.|...++.++. ... .+ .+.||+|++..+++++|+ .+.++|+++
T Consensus 319 ~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~---~l~~al~~~ 391 (393)
T 1n8p_A 319 ASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLE---DIKQALKQA 391 (393)
T ss_dssp HHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHH---HHHHHHHHH
T ss_pred HHHHHhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHH---HHHHHHHHh
Confidence 34444444333332210 000 01 378999999999999999 999988765
No 260
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.71 E-value=3.3e-15 Score=170.68 Aligned_cols=324 Identities=13% Similarity=0.112 Sum_probs=202.1
Q ss_pred HHHHHHHHHcCCCccceecCCCCCCCCCcHHHHHHHHh---CCccccccCCChhhHhhHHHHHHHHHHHHHHHhhCC--C
Q 001990 153 MIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIME---NPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGL--P 227 (985)
Q Consensus 153 ~~~~~~~~~~~n~~~~~~lG~g~~~~~~p~~v~~~i~~---~~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g~--~ 227 (985)
+.+..+++...+..+.+| +.|..+...|+.+.+.+.+ +. ...|++. +|..+...++.+.+.+..|. +
T Consensus 18 ~~~~~~~~~~~g~~~i~l-~~~~~~~~~~~~v~~a~~~~~~~~--~~~y~~~-----~g~~~l~~~la~~~~~~~g~~~~ 89 (388)
T 1j32_A 18 IDAKAKAMKAEGIDVCSF-SAGEPDFNTPKHIVEAAKAALEQG--KTRYGPA-----AGEPRLREAIAQKLQRDNGLCYG 89 (388)
T ss_dssp THHHHHHHHTTTCCCEEC-CCSSCSSCCCHHHHHHHHHHHHTT--CCSCCCT-----TCCHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHhcCCCEEEC-CCCCCCCCCCHHHHHHHHHHHhcC--CCCCCCC-----CCCHHHHHHHHHHHHHhcCCCCC
Confidence 344444444444433333 3344344456665444332 21 2344432 22222222233344444464 4
Q ss_pred CcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----------hhhhc-cCC
Q 001990 228 MSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----------KDIDY-KSG 296 (985)
Q Consensus 228 ~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~----------~~l~~-l~~ 296 (985)
+.++.+++|+|.+++.++.++ .. +||+|++++..|+++...++. .|++++.++. +++++ +++
T Consensus 90 ~~~v~~~~g~~~a~~~~~~~~-~~--~gd~vl~~~~~~~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 162 (388)
T 1j32_A 90 ADNILVTNGGKQSIFNLMLAM-IE--PGDEVIIPAPFWVSYPEMVKL----AEGTPVILPTTVETQFKVSPEQIRQAITP 162 (388)
T ss_dssp GGGEEEESHHHHHHHHHHHHH-CC--TTCEEEEESSCCTHHHHHHHH----TTCEEEEECCCGGGTTCCCHHHHHHHCCT
T ss_pred hhhEEEcCCHHHHHHHHHHHh-cC--CCCEEEEcCCCChhHHHHHHH----cCCEEEEecCCcccCCCCCHHHHHHhcCc
Confidence 567888899998888877665 23 789999999999998877653 5778877754 24555 677
Q ss_pred CEeEEEEEcC-CCCeee---ccHHHHHHHHHhCCcEEEEEeccccccCCC-----CCC-----cccceEEEecC-ccccc
Q 001990 297 DVCGVLVQYP-GTEGEV---LDYGDFIKNAHANGVKVVMATDLLALTILK-----PPG-----ELGADIVVGSA-QRFGV 361 (985)
Q Consensus 297 ~t~~V~v~~p-n~~G~i---~dl~~I~~~a~~~galliV~a~~~alg~l~-----~p~-----~~GaDi~v~s~-k~lg~ 361 (985)
++++|++++| |++|.+ +++++|+++|+++|+++++|. ..+..... +.. .++.|++++|. |.|+.
T Consensus 163 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~ 241 (388)
T 1j32_A 163 KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDE-IYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAM 241 (388)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC-TTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTC
T ss_pred CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEc-cchhcccCCCCCCCHHHccccccCCEEEEeechhccCC
Confidence 8999999998 679998 469999999999999999953 33322111 111 15789999998 77642
Q ss_pred cCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHH-HHHHcCc
Q 001990 362 PMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM-YAVYHGP 440 (985)
Q Consensus 362 P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~-y~~~~g~ 440 (985)
| |..+|++++++++++.+... +...+.+. +.+ +..++. .+. .+.
T Consensus 242 ~----G~r~G~~~~~~~~~~~l~~~--------------------------~~~~~~~~---~~~-~~~a~~~~l~-~~~ 286 (388)
T 1j32_A 242 T----GWRVGFLAGPVPLVKAATKI--------------------------QGHSTSNV---CTF-AQYGAIAAYE-NSQ 286 (388)
T ss_dssp T----TTCCEEEECCHHHHHHHHHH--------------------------HHTTTCSC---CHH-HHHHHHHHHH-SCS
T ss_pred c----ccceEEEEeCHHHHHHHHHH--------------------------HhhcccCC---CHH-HHHHHHHHHh-CCc
Confidence 2 22379999998877654110 00111121 112 112222 122 345
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecC----CHHHHHHHHHH-cCceeeee----cCCeEEEEe
Q 001990 441 EGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA----DAHAIASAAYK-IEMNLRVV----DSNTVTASF 511 (985)
Q Consensus 441 ~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~----~~~~l~~~L~~-~Gi~~~~~----~~~~lris~ 511 (985)
+.++++.++..++.+++.+.|++++|+++..+...--+.+..+ ...++.+.|.+ +||.+... .++.+|+++
T Consensus 287 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~ 366 (388)
T 1j32_A 287 DCVQEMLAAFAERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSY 366 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCCeeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEe
Confidence 6688889999999999999999883377653221101122232 27889999986 79988643 157899998
Q ss_pred ccCCCHHHHHHHHHHHhC
Q 001990 512 DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 512 ~~~~t~edid~ll~~l~~ 529 (985)
+ +++++++++++.|..
T Consensus 367 ~--~~~~~i~~~~~~l~~ 382 (388)
T 1j32_A 367 A--TDLDTIKRGMERLEK 382 (388)
T ss_dssp C--SCHHHHHHHHHHHHH
T ss_pred c--CCHHHHHHHHHHHHH
Confidence 7 799999999999874
No 261
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.71 E-value=7.3e-16 Score=177.06 Aligned_cols=270 Identities=15% Similarity=0.115 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--h
Q 001990 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--K 289 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~--~ 289 (985)
.+.++++.+|+++|.+ ...++.+||.+++.++. + .. +||+||++...|+++...+...++..|++++.++. +
T Consensus 56 ~~~~lr~~la~~~g~~--~~i~~~sGt~a~~~al~-~-~~--~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~ 129 (393)
T 1n8p_A 56 NRENLERAVAALENAQ--YGLAFSSGSATTATILQ-S-LP--QGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLLN 129 (393)
T ss_dssp HHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHH-T-SC--SSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSHHH
T ss_pred hHHHHHHHHHHHhCCC--cEEEECChHHHHHHHHH-H-cC--CCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCChH
Confidence 3567889999999987 36677888877776655 3 22 78999999999998888776556778999999977 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhC----CcEEEEEeccccccCCCCCCcccceEEEecC-cccccc
Q 001990 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHAN----GVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVP 362 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~----galliV~a~~~alg~l~~p~~~GaDi~v~s~-k~lg~P 362 (985)
++++ ++++|++|++.+| |.+|.+.|+++|+++||++ |+++++| +..+.+...++.++|+|++++|+ |.++
T Consensus 130 ~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD-~a~~~~~~~~~~~~~~di~~~S~sK~~g-- 206 (393)
T 1n8p_A 130 DLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVD-NTFLSPYISNPLNFGADIVVHSATKYIN-- 206 (393)
T ss_dssp HHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEE-CTTTHHHHCCGGGGTCSEEEEETTTTTT--
T ss_pred HHHHhcccCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEe-CCccccccCCHHHcCCeEEEEECccccc--
Confidence 5666 7889999999988 6899999999999999999 9999995 34454444456678999999998 6554
Q ss_pred CCCCCCc--e-EEEEEc-hhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHc
Q 001990 363 MGYGGPH--A-AFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYH 438 (985)
Q Consensus 363 ~~~GGP~--~-G~l~~~-~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~ 438 (985)
||| . |+++++ +++++.+.. .++..|+.. ++...++...+
T Consensus 207 ----~~G~rigG~~~~~~~~~~~~l~~-------------------------~~~~~g~~~--~~~~~~~~~~~------ 249 (393)
T 1n8p_A 207 ----GHSDVVLGVLATNNKPLYERLQF-------------------------LQNAIGAIP--SPFDAWLTHRG------ 249 (393)
T ss_dssp ----CSSCCCCEEEEESCHHHHHHHHH-------------------------HHHHHCCCC--CHHHHHHHHHH------
T ss_pred ----CCCCceeEEEEeCCHHHHHHHHH-------------------------HHHhcCCCC--CHHHHHHHHhc------
Confidence 334 3 888885 666655410 001111110 11111111111
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhcCCC-EE-E-cCC----C------------C-cceEEEecCC----HHHHHHHHHH
Q 001990 439 GPEGLKTIAQRVHGLAGTFALGLKKLGT-VE-V-QGL----P------------F-FDTVKVKCAD----AHAIASAAYK 494 (985)
Q Consensus 439 g~~Gl~~i~~~~~~~a~~l~~~L~~~g~-~~-~-~~~----~------------~-~~~~~i~~~~----~~~l~~~L~~ 494 (985)
.+.+....++..+++.++++.|++.+. +. + ++. + . ...+.|.+++ ...+.+.|..
T Consensus 250 -l~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~ 328 (393)
T 1n8p_A 250 -LKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRL 328 (393)
T ss_dssp -HTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSS
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCc
Confidence 123555667777888889999988753 33 2 111 1 2 3356777764 3334444332
Q ss_pred cCceee--------e-------------------ecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001990 495 IEMNLR--------V-------------------VDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 495 ~Gi~~~--------~-------------------~~~~~lris~~~~~t~edid~ll~~l~ 528 (985)
.++.++ . ..++.+|+|++..+++++|+++.++|.
T Consensus 329 ~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~ 389 (393)
T 1n8p_A 329 FTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALK 389 (393)
T ss_dssp SEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHH
T ss_pred ceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHH
Confidence 232211 0 114789999999999999999999986
No 262
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.71 E-value=1.5e-15 Score=177.91 Aligned_cols=296 Identities=15% Similarity=0.184 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHHHhCCC--ccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCCCcHHHHHhcCc------
Q 001990 632 EMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------ 702 (985)
Q Consensus 632 ~~~~el~~~la~l~G~~--~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv-~~~~Hg~~~~~~~~~G~------ 702 (985)
+...+++++++++++.+ ...++++||++++++++.+++.+ .++++||+ ...+||.........|.
T Consensus 107 ~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~------~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~ 180 (453)
T 4ffc_A 107 EQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLA------TGRPAVVAFDNAYHGRTNLTMALTAKSMPYKS 180 (453)
T ss_dssp HHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTT
T ss_pred HHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHh------cCCCEEEEEcCccCCcchHHHhhcCCCccccc
Confidence 35668889999999743 23577899999988888776654 24566776 55778877665443221
Q ss_pred -------EEEEEeCCC----CCCCC--------HHHHHHHHHhcCCCeEEEEEEcC-C-Ccccccc-C--HHHHHHHHHH
Q 001990 703 -------KIVSVGTDA----KGNIN--------IEELRKAAEANRDNLSTLMVTYP-S-THGVYEE-G--IDEICKIIHD 758 (985)
Q Consensus 703 -------~v~~v~~~~----~g~iD--------le~L~~~i~~~~~~t~~Vvi~~p-n-~~G~i~~-d--i~eI~~la~~ 758 (985)
.+..+|++. ....+ +++|++++. .+++++| +..| + +.|++.+ + +++|+++|++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~--~~~~aav-i~ep~~~~gG~~~~~~~~l~~l~~l~~~ 257 (453)
T 4ffc_A 181 QFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIG--AQSLAAI-IIEPIQGEGGFIVPAPGFLATLTAWASE 257 (453)
T ss_dssp TSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTC--GGGEEEE-EECSSBTTTTSBCCCTTHHHHHHHHHHH
T ss_pred CCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcC--CCCEEEE-EEcCCCCCCCcccCCHHHHHHHHHHHHH
Confidence 455666531 11122 344555443 1344544 4455 3 4566651 1 9999999999
Q ss_pred cCCEEEEEccccccccCCCCCCc--------CCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCC
Q 001990 759 NGGQVYMDGANMNAQVGLTSPGY--------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGI 830 (985)
Q Consensus 759 ~g~lliVD~a~~~~~~g~~~~g~--------~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~ 830 (985)
||+++|+|++|. + +.+.+. ..+|+++++ |+|+ +|.++|++++++++++.+.....+
T Consensus 258 ~~~llI~DEv~~-g---~g~~g~~~a~~~~~~~pdi~t~s--K~~~-----~G~~~G~~~~~~~i~~~~~~~~~~----- 321 (453)
T 4ffc_A 258 NGVVFIADEVQT-G---FARTGAWFASEHEGIVPDIVTMA--KGIA-----GGMPLSAVTGRAELMDAVYAGGLG----- 321 (453)
T ss_dssp HTCEEEEECTTT-T---TTTTSSSSTHHHHTCCCSEEEEC--GGGG-----TTSSCEEEEEEHHHHTTSCTTSSC-----
T ss_pred cCCEEEEecCcc-C---CCcccccchhhhcCCCcchHhhh--hhhc-----CCcCeEEEEECHHHHhhhcccCcC-----
Confidence 999999999874 2 222221 236887764 8884 357899999998887665421110
Q ss_pred CCCCCCCCCCCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc---cCCee--EcCCCCceeEEE
Q 001990 831 PAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK---HYPIL--FRGVNGTVAHEF 905 (985)
Q Consensus 831 ~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~---~~~i~--~~g~~~~~~~~~ 905 (985)
. +.+ +++..++++.+.+..+..+++. ++..++.+++++.|++ .+... ..+. +.+ +
T Consensus 322 -------~--t~~----~~~~~~aaa~aal~~~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~~---~ 381 (453)
T 4ffc_A 322 -------G--TYG----GNPVTCAAAVAALGVMRELDLP---ARARAIEASVTSRLSALAEEVDIIGEVRGR-GAM---L 381 (453)
T ss_dssp -------C--SSS----SCHHHHHHHHHHHHHHHHTTHH---HHHHHHHHHHHHHHHHHHHHCSSEEEEEEE-TTE---E
T ss_pred -------C--CCC----cCHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHhhCCCeEEEEee-ceE---E
Confidence 1 111 2334445556666655444433 4455566777777764 22221 1111 122 2
Q ss_pred EEEecC--ccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHH
Q 001990 906 IVDLRG--LKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 906 vv~~~~--~~~~~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
.+.+.. .+........++.+.|.++|+.+.... +..+.+|++++..+|++|++ +++++|+++++++.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~~iRi~~~~~~t~e~i~---~~l~~l~~~l~~~~ 450 (453)
T 4ffc_A 382 AIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCG-TFGNVIRLLPPLVIGDDLLD---EGITALSDIIRAKA 450 (453)
T ss_dssp EEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEEC-TTSCEEEECCCTTCCHHHHH---HHHHHHHHHHHHHC
T ss_pred EEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCC-CCCCEEEEECCCCCCHHHHH---HHHHHHHHHHHHHH
Confidence 233320 000011235678899999999875432 12478999999999999999 99999999987653
No 263
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.71 E-value=9.4e-16 Score=175.98 Aligned_cols=275 Identities=12% Similarity=0.137 Sum_probs=192.1
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001990 207 QGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~ 286 (985)
+|..+...++++.+++++|.+ ++.+++|||.+++.++.++. ++||+|+++...|+++...++. .|.+++.+
T Consensus 84 ~g~~~~~~~l~~~la~~~g~~--~v~~~~ggt~a~~~~~~~~~---~~gd~V~~~~p~~~~~~~~~~~----~g~~~~~v 154 (398)
T 3a2b_A 84 NGTLDIHVELEEKLSAYVGKE--AAILFSTGFQSNLGPLSCLM---GRNDYILLDERDHASIIDGSRL----SFSKVIKY 154 (398)
T ss_dssp TCCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHSS---CTTCEEEEETTCCHHHHHHHHH----SSSEEEEE
T ss_pred cCCcHHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh---CCCCEEEECCccCHHHHHHHHH----cCCceEEe
Confidence 344455667888999999975 58889999988887766652 3789999999999999888753 57888877
Q ss_pred Cc---hhhhc-cCC----CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCC----CC-Ccc----c
Q 001990 287 DL---KDIDY-KSG----DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK----PP-GEL----G 348 (985)
Q Consensus 287 ~~---~~l~~-l~~----~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~----~p-~~~----G 348 (985)
+. +++++ +++ ++++|++.+| |.+|.+.|+++|.++|+++|+++++| +..+.+... +. ..+ +
T Consensus 155 ~~~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~D-e~~~~~~~~~~~~~~~~~~~~~~~ 233 (398)
T 3a2b_A 155 GHNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVD-DAHSLGVIGHKGAGTASHFGLNDD 233 (398)
T ss_dssp CTTCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEE-CTTTTTTSSGGGCCHHHHHTCGGG
T ss_pred CCCCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEE-CCCcccccCCCCCchHhhcCCCcC
Confidence 54 55665 433 7899998887 67999999999999999999999995 344444321 11 112 3
Q ss_pred ceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHH
Q 001990 349 ADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALL 427 (985)
Q Consensus 349 aDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~ 427 (985)
+|++++|. |.|+ | || |++++++++++.+.... . ++ ...++++. ....
T Consensus 234 ~di~~~s~sK~~~-~-----~G-G~~~~~~~~~~~l~~~~----------~----------~~--~~~~~~~~---~~~a 281 (398)
T 3a2b_A 234 VDLIMGTFSKSLA-S-----LG-GFVAGDADVIDFLKHNA----------R----------SV--MFSASMTP---ASVA 281 (398)
T ss_dssp CSEEEEESSSTTC-S-----SC-EEEEECHHHHHHHHHHC----------H----------HH--HSSBCCCH---HHHH
T ss_pred CeEEEeccccccc-C-----CC-cEEEeCHHHHHHHHHhc----------c----------cc--eecCCCCH---HHHH
Confidence 79999998 8775 3 23 89999988776541000 0 00 00011111 1111
Q ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeeec-
Q 001990 428 ANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVVD- 503 (985)
Q Consensus 428 a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~---~~~l~~~L~~~Gi~~~~~~- 503 (985)
+..+++ ..+ +.++++.++..++.+++.+.|+++| +++.... ..-+.+..+. ..++.++|.++||.+....
T Consensus 282 ~~~~~l--~~~--~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~-g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~ 355 (398)
T 3a2b_A 282 STLKAL--EII--QNEPEHIEKLWKNTDYAKAQLLDHG-FDLGATE-SPILPIFIRSNEKTFWVTKMLQDDGVFVNPVVS 355 (398)
T ss_dssp HHHHHH--HHH--HHCTHHHHHHHHHHHHHHHHHHHTT-CCBCSCC-SSEEEEECCCHHHHHHHHHHHHHTTEECEEECT
T ss_pred HHHHHH--HHH--hhCHHHHHHHHHHHHHHHHHHHhcC-CCcCCCC-CCEEEEEcCCHHHHHHHHHHHHHCCcEEEeeCC
Confidence 222332 222 2245778888899999999999886 7765322 2335566654 6789999999999886531
Q ss_pred ------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 504 ------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 ------~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.+.+|++++.+++++|+++++++|..
T Consensus 356 ~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~ 387 (398)
T 3a2b_A 356 PAVPAEESLIRFSLMATHTYDQIDEAIEKMVK 387 (398)
T ss_dssp TTSCGGGCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCceEEEEEeCCCCHHHHHHHHHHHHH
Confidence 37899999999999999999999974
No 264
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.71 E-value=9e-16 Score=176.90 Aligned_cols=273 Identities=15% Similarity=0.104 Sum_probs=184.7
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---h
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---K 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~---~ 289 (985)
..++++.+|+++|.+ ...++.+|++++.+++. + . ++||+|++++..|+++...+...++..|++++.++. +
T Consensus 69 ~~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~-l-~--~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~ 142 (403)
T 3cog_A 69 RNCLEKAVAALDGAK--YCLAFASGLAATVTITH-L-L--KAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIK 142 (403)
T ss_dssp HHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHT-T-S--CTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTTSHH
T ss_pred HHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHH-H-h--CCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCCCHH
Confidence 356788999999987 35567777766665544 3 2 378999999999999888887767778999999975 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCC-cEEEEEeccccccCCCCCCcccceEEEecC-ccccccCCC
Q 001990 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANG-VKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~g-alliV~a~~~alg~l~~p~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
++++ ++++|++|++.+| |++|.+.|+++|+++||++| ++++|| +.++.+....|.++|+|++++|. |.|++|
T Consensus 143 ~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD-~~~~~~~~~~~~~~~~div~~S~sK~~~g~--- 218 (403)
T 3cog_A 143 LLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVD-NTFMSPYFQRPLALGADISMYSATKYMNGH--- 218 (403)
T ss_dssp HHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEE-CTTTCTTTCCTTTTTCSEEEEETTTTTTCS---
T ss_pred HHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEE-CCCcccccCCccccCCeEEEEcChhhccCC---
Confidence 5555 7889999999998 78999999999999999999 999995 45555555556678999999998 877643
Q ss_pred CCCceEEEEEc-hhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHH
Q 001990 366 GGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLK 444 (985)
Q Consensus 366 GGP~~G~l~~~-~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~ 444 (985)
||--+|+++++ +++.+.+.....+ ..++. .++.+ .++ ..+.+.+.
T Consensus 219 ~~~~~G~v~~~~~~l~~~l~~~~~~------------------------~g~~~-----~~~~~-~~~----~~~l~~l~ 264 (403)
T 3cog_A 219 SDVVMGLVSVNCESLHNRLRFLQNS------------------------LGAVP-----SPIDC-YLC----NRGLKTLH 264 (403)
T ss_dssp SCCCCEEEEECCHHHHHHHHHHHHH------------------------HCCCC-----CHHHH-HHH----HHHHTTHH
T ss_pred CCCeEEEEEECcHHHHHHHHHHHHh------------------------cCCCC-----CHHHH-HHH----HhhhhHHH
Confidence 11114899885 5666554110000 00001 11111 111 11112344
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCEE-Ec-C---C-C-----------CcceEEEecCC-HHHHHHHHHHcCceeee-----
Q 001990 445 TIAQRVHGLAGTFALGLKKLGTVE-VQ-G---L-P-----------FFDTVKVKCAD-AHAIASAAYKIEMNLRV----- 501 (985)
Q Consensus 445 ~i~~~~~~~a~~l~~~L~~~g~~~-~~-~---~-~-----------~~~~~~i~~~~-~~~l~~~L~~~Gi~~~~----- 501 (985)
...++..+++..+.+.|++...++ ++ . . + ....+.|.+++ ..++.+.|.+.||....
T Consensus 265 ~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~l~~~~i~~~~~s~G~ 344 (403)
T 3cog_A 265 VRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQHAEIFLKNLKLFTLAESLGG 344 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCSS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCCHHHHHHHHHhCCcceEccCCCC
Confidence 555666677777777776652122 11 1 0 1 12346677665 56677777777884321
Q ss_pred -------------------------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 502 -------------------------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 -------------------------~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
..++.+|+|++..+++++|++|.++|..
T Consensus 345 ~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~ 397 (403)
T 3cog_A 345 FESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKA 397 (403)
T ss_dssp SSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred cceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 1147899999999999999999999863
No 265
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.71 E-value=3.3e-15 Score=172.26 Aligned_cols=271 Identities=17% Similarity=0.144 Sum_probs=184.0
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---h
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---K 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~---~ 289 (985)
..++++.+|+++|.+ ++.++.+|+.++..++.++ .. +||+|+++...|+++...|+..++..|++++.++. +
T Consensus 64 ~~~l~~~ia~~~g~~--~~i~~~~g~~ai~~~~~~l-~~--~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~ 138 (404)
T 1e5e_A 64 VSNLEGKIAFLEKTE--ACVATSSGMGAIAATVLTI-LK--AGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPG 138 (404)
T ss_dssp HHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHH-CC--TTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTT
T ss_pred HHHHHHHHHHHhCCC--cEEEeCChHHHHHHHHHHH-hC--CCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHH
Confidence 456788999999986 4778888887777766654 22 78999999999999999776555668999999875 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHh-CCcEEEEEeccccccCCCCCCcccceEEEecC-ccccccCCC
Q 001990 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHA-NGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~-~galliV~a~~~alg~l~~p~~~GaDi~v~s~-k~lg~P~~~ 365 (985)
++++ ++++|++|++.+| |++|.+.|+++|+++|++ +|+++++| +..+.+....|.++|+|+++.|. |+|++|
T Consensus 139 ~l~~~i~~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~D-e~~~~~~~~~~~~~~~di~~~S~sK~~~~~--- 214 (404)
T 1e5e_A 139 EVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIAD-NTFCSPMITNPVDFGVDVVVHSATKYINGH--- 214 (404)
T ss_dssp HHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEE-CTTTCTTTCCGGGGTCSEEEEETTTTTTCS---
T ss_pred HHHHhcCCCCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEE-CCCchhhhCCccccCCEEEEEcCccccCCC---
Confidence 5666 7889999999998 789999999999999999 99999995 44554444445678999999998 878654
Q ss_pred CCCceEEEEEchhhHh-cCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHH
Q 001990 366 GGPHAAFLATSQEYKR-MMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLK 444 (985)
Q Consensus 366 GGP~~G~l~~~~~~~~-~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~ 444 (985)
|++-+|++++++++++ .+.....+ + .+ .+. ++...++..++ + +.++
T Consensus 215 g~ri~G~~~~~~~~~~~~l~~~~~~----------~--------------~g-~~~-~~~~~~~~~~~-----l--~~~~ 261 (404)
T 1e5e_A 215 TDVVAGLICGKADLLQQIRMVGIKD----------I--------------TG-SVI-SPHDAWLITRG-----L--STLN 261 (404)
T ss_dssp SCCCCEEEEECHHHHHHHHHTCCCC----------C--------------CC-CCC-CHHHHHHHHHH-----H--TTHH
T ss_pred CCCeEEEEEECHHHHHHHHHHHHHh----------C--------------CC-CCC-CHHHHHHHHHh-----H--hHHH
Confidence 2222489999988766 54110000 0 00 011 00111111111 1 2345
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCEE-Ec-CC----C-----------CcceEEEecCC-HHHHHHHHHHcCceeee-----
Q 001990 445 TIAQRVHGLAGTFALGLKKLGTVE-VQ-GL----P-----------FFDTVKVKCAD-AHAIASAAYKIEMNLRV----- 501 (985)
Q Consensus 445 ~i~~~~~~~a~~l~~~L~~~g~~~-~~-~~----~-----------~~~~~~i~~~~-~~~l~~~L~~~Gi~~~~----- 501 (985)
...++..+++.++.+.|++.+.+. ++ .. | ...-+.|.+++ ..++.+.|.+.||....
T Consensus 262 ~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~s~G~ 341 (404)
T 1e5e_A 262 IRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGG 341 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEESSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCCHHHHHHHHHhCCCceeccCCCC
Confidence 566667788888888888763243 21 11 0 12346677766 45666777777884321
Q ss_pred -------------------------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 502 -------------------------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 -------------------------~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+.++.+|+|++. ||++++++.|..
T Consensus 342 ~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~ 390 (404)
T 1e5e_A 342 CESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQ 390 (404)
T ss_dssp SSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHH
T ss_pred cceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHH
Confidence 114789999998 677777777763
No 266
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.71 E-value=1e-15 Score=177.28 Aligned_cols=299 Identities=12% Similarity=0.117 Sum_probs=185.6
Q ss_pred HHHHHHHHHHHHh-C-CCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEc-CCCCCCcHHHHHhcCcE------
Q 001990 633 MFNNLGEWLCTIT-G-FDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIP-VSAHGTNPATAAMCGMK------ 703 (985)
Q Consensus 633 ~~~el~~~la~l~-G-~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~-~~~Hg~~~~~~~~~G~~------ 703 (985)
...++++.+++++ | .+...+++++|++++..++..++.+. .++ +||+. ..+|+.....+...|.+
T Consensus 85 ~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~-----~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~ 158 (426)
T 1sff_A 85 PYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT-----KRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAG 158 (426)
T ss_dssp HHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH-----TCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTT
T ss_pred HHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhh-----CCC-eEEEECCCcCCCchHhhhhcCCccccccc
Confidence 3567889999999 5 21334667888887766555333432 233 67764 45777776666655543
Q ss_pred -------EEEEeCCC-----CCCCCHHHHHHHHHhc--CCCeEEEEEE-cCCCccccccC----HHHHHHHHHHcCCEEE
Q 001990 704 -------IVSVGTDA-----KGNINIEELRKAAEAN--RDNLSTLMVT-YPSTHGVYEEG----IDEICKIIHDNGGQVY 764 (985)
Q Consensus 704 -------v~~v~~~~-----~g~iDle~L~~~i~~~--~~~t~~Vvi~-~pn~~G~i~~d----i~eI~~la~~~g~lli 764 (985)
++.+|++. ++.+|+++|++++++. .+++++|+++ +++.+|.+. + +++|.++|+++|+++|
T Consensus 159 ~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~-~~~~~l~~l~~l~~~~~~~li 237 (426)
T 1sff_A 159 MGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYA-SSPAFMQRLRALCDEHGIMLI 237 (426)
T ss_dssp SCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCB-CCHHHHHHHHHHHHHHTCEEE
T ss_pred cCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCccc-CCHHHHHHHHHHHHHcCCEEE
Confidence 67777753 1347999999999741 1467777764 344489665 5 9999999999999999
Q ss_pred EEccccccccCCCC---CC--cCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCC
Q 001990 765 MDGANMNAQVGLTS---PG--YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPL 839 (985)
Q Consensus 765 VD~a~~~~~~g~~~---~g--~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t 839 (985)
+|++|. +++.... .. ...+|++++ +|+|+ . |.++|++++++++++.+..... ..+
T Consensus 238 ~De~~~-~~~~~g~~~~~~~~~~~~di~s~--sK~~~----~-GlriG~~~~~~~~~~~l~~~~~------------~~~ 297 (426)
T 1sff_A 238 ADEVQS-GAGRTGTLFAMEQMGVAPDLTTF--AKSIA----G-GFPLAGVTGRAEVMDAVAPGGL------------GGT 297 (426)
T ss_dssp EECTTT-TTTTTSSSSGGGGTTSCCSEEEE--CGGGG----T-SSCCEEEEEEHHHHTTSCTTSB------------CCS
T ss_pred Eechhh-ccCcccchhhhhhcCCCCCEEEE--ccccc----C-CCceEEEEEcHHHHhhhccCCc------------CcC
Confidence 999986 3321111 01 123787744 69885 2 4678999999887765542110 011
Q ss_pred CCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-c--CCee--EcCCCCceeEEEEEEecCccc
Q 001990 840 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-H--YPIL--FRGVNGTVAHEFIVDLRGLKN 914 (985)
Q Consensus 840 ~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~--~~i~--~~g~~~~~~~~~vv~~~~~~~ 914 (985)
.+. ++....++.+.+..+..+. ..++..+++++++++|++ . ++.. ..+ .+. .+.+++...+.
T Consensus 298 --~~~----~~~~~~a~~aal~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g~---~~~~~~~~~~~ 364 (426)
T 1sff_A 298 --YAG----NPIACVAALEVLKVFEQEN---LLQKANDLGQKLKDGLLAIAEKHPEIGDVRG-LGA---MIAIELFEDGD 364 (426)
T ss_dssp --SSS----CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHTCTTEEEEEE-ETT---EEEEEEBGGGC
T ss_pred --CCC----CHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE-EEE---EEEEEEecCcc
Confidence 111 2223333444555554433 334566777888888865 2 3321 111 122 23445431000
Q ss_pred ---cCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 915 ---TAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 915 ---~~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
..+.+..++.+.|.++||.+..... .++.+|++++..+|++|++ +++++|+++++++
T Consensus 365 ~~~~~~~~~~~l~~~l~~~gi~v~~~~~-~~~~iRi~~~~~~~~~~i~---~~~~~l~~~l~~~ 424 (426)
T 1sff_A 365 HNKPDAKLTAEIVARARDKGLILLSCGP-YYNVLRILVPLTIEDAQIR---QGLEIISQCFDEA 424 (426)
T ss_dssp TTSBCHHHHHHHHHHHHHTTEECEEEST-TSCEEEECCCTTCCHHHHH---HHHHHHHHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHCCcEEecCCC-CCCEEEEECCccCCHHHHH---HHHHHHHHHHHHH
Confidence 0113457899999999998753321 1488999999899999999 9999999988765
No 267
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.71 E-value=2.6e-16 Score=181.96 Aligned_cols=211 Identities=17% Similarity=0.158 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHH----HhcCcEEEEEe
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA----AMCGMKIVSVG 708 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~----~~~G~~v~~v~ 708 (985)
...++++++++++|.+.. +++++|++++.+++.++. .++++||++...|+.+...+ ...|++++.++
T Consensus 82 ~~~~l~~~la~~~g~~~~-~~~~sG~~Ai~~al~~l~--------~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 152 (414)
T 3ndn_A 82 TVSVFEERLRLIEGAPAA-FATASGMAAVFTSLGALL--------GAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVD 152 (414)
T ss_dssp HHHHHHHHHHHHHTCSEE-EEESSHHHHHHHHHHTTC--------CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeC
Confidence 467899999999998654 667788776644444321 46789999888666544443 34899999999
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCCCcEE
Q 001990 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 709 ~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g~Di~ 787 (985)
.+ |+++|+++++ ++|++|++++| |++|.+. |+++|+++|+++|+++++|+++..+. +..+..+|+|++
T Consensus 153 ~~-----d~~~l~~ai~---~~t~~v~le~p~NptG~~~-~l~~i~~la~~~g~~livDe~~~~~~--~~~~~~~g~div 221 (414)
T 3ndn_A 153 GD-----DLSQWERALS---VPTQAVFFETPSNPMQSLV-DIAAVTELAHAAGAKVVLDNVFATPL--LQQGFPLGVDVV 221 (414)
T ss_dssp TT-----CHHHHHHHTS---SCCSEEEEESSCTTTCCCC-CHHHHHHHHHHTTCEEEEECTTTHHH--HCCCGGGTCSEE
T ss_pred CC-----CHHHHHHhcC---CCCeEEEEECCCCCCCccc-cHHHHHHHHHHcCCEEEEECCCcccc--cCCchhcCCCeE
Confidence 75 8999999997 78999999999 5899998 89999999999999999999986432 234557889999
Q ss_pred EeCCcccccccCCCCCCcceeeeecccccC-cCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhchh
Q 001990 788 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAP-FLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 788 ~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~-~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~ 866 (985)
+.|++|+|+.+ |.+.+|+++++++.+. .+.... . ..+...+ + ..+|..+. +.+
T Consensus 222 ~~S~sK~l~~~---G~~~~G~vv~~~~~~~~~l~~~~-~------------~~g~~~~-----~---~~a~~~~~--~l~ 275 (414)
T 3ndn_A 222 VYSGTKHIDGQ---GRVLGGAILGDREYIDGPVQKLM-R------------HTGPAMS-----A---FNAWVLLK--GLE 275 (414)
T ss_dssp EEETTTTTTCS---SCCCCEEEEECHHHHTTHHHHHH-H------------HHCCCCC-----H---HHHHHHHH--HGG
T ss_pred eccCCccccCC---CCceEEEEEECHHHHHHHHHHHH-H------------HcCCCCC-----H---HHHHHHHH--HHH
Confidence 99999998421 2155899998876543 221100 0 0000011 1 12333333 334
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcc
Q 001990 867 GLTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 867 gl~~~~~~~~~~a~~l~~~L~~~ 889 (985)
.+....++..++++++.+.|++.
T Consensus 276 ~l~~r~~~~~~~a~~l~~~L~~~ 298 (414)
T 3ndn_A 276 TLAIRVQHSNASAQRIAEFLNGH 298 (414)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 56666677788899999999864
No 268
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.70 E-value=1e-15 Score=173.62 Aligned_cols=266 Identities=13% Similarity=0.134 Sum_probs=186.2
Q ss_pred HHHHHHHHHhhCC-CCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001990 214 LNFQTMIADLTGL-PMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 214 ~e~q~~ia~L~g~-~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~---- 288 (985)
.++++.+|+++|. +..++.+++|+|.+++.++.++ . ++||+|+++...|+.+...++ ..|.+++.++.
T Consensus 70 ~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-~--~~gd~Vl~~~~~~~~~~~~~~----~~g~~~~~v~~~~~~ 142 (367)
T 3euc_A 70 EALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAA-A--RPGAKVMAPVPGFVMYAMSAQ----FAGLEFVGVPLRADF 142 (367)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHT-C--CTTCEEEEEESCSCCSCHHHH----TTTCEEEEEECCTTS
T ss_pred HHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHH-c--CCCCEEEEcCCCHHHHHHHHH----HcCCeEEEecCCCCC
Confidence 4678899999999 6668888999998888777665 2 378999999999988877754 46888887753
Q ss_pred ----hhhhc-cCC-CEeEEEEEcC-CCCeee---ccHHHHHHHHHhC--CcEEEEEecccc-c---cCCCCCCcccceEE
Q 001990 289 ----KDIDY-KSG-DVCGVLVQYP-GTEGEV---LDYGDFIKNAHAN--GVKVVMATDLLA-L---TILKPPGELGADIV 352 (985)
Q Consensus 289 ----~~l~~-l~~-~t~~V~v~~p-n~~G~i---~dl~~I~~~a~~~--galliV~a~~~a-l---g~l~~p~~~GaDi~ 352 (985)
+++++ +++ ++++|++++| |.+|.+ +++++|+++|+++ |+++++|. ..+ + +.......++.+++
T Consensus 143 ~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~i~ 221 (367)
T 3euc_A 143 TLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDE-AYQPFAQESWMSRLTDFGNLLV 221 (367)
T ss_dssp CCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEEC-TTCCSSSCCSGGGGGTCTTEEE
T ss_pred CCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeC-cchhhcccchHHHHhhCCCEEE
Confidence 44555 555 8999999988 679988 4688889999999 99999952 222 1 11111234567788
Q ss_pred EecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHH
Q 001990 353 VGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMA 431 (985)
Q Consensus 353 v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~a 431 (985)
++|. |. +. +|..+|++.+++++.+.+... . + +.+. +.....+..+
T Consensus 222 ~~s~sK~-~~----~G~r~G~~~~~~~~~~~~~~~----------~---------------~---~~~~-~~~~~~a~~~ 267 (367)
T 3euc_A 222 MRTVSKL-GL----AGIRLGYVAGDPQWLEQLDKV----------R---------------P---PYNV-NVLTEATALF 267 (367)
T ss_dssp EEECCCT-TS----CSCCEEEEEECHHHHHHHGGG----------C---------------C---SSCC-CHHHHHHHHH
T ss_pred Eecchhh-cc----cccCceeeeeCHHHHHHHHHh----------C---------------C---CCCC-CHHHHHHHHH
Confidence 8887 65 43 344679999988877665110 0 0 0011 1112212222
Q ss_pred HHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecCCHHHHHHHHHHcCceeeee------cCC
Q 001990 432 AMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNLRVV------DSN 505 (985)
Q Consensus 432 a~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~L~~~Gi~~~~~------~~~ 505 (985)
+ +. ..+.++++.++..++.+++.+.|+++.|+++.... ..-+.+.++...++.+.|.++||.++.. .++
T Consensus 268 ~--l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~~-~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~ 342 (367)
T 3euc_A 268 A--LE--HVAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPSA-ANFLLARVPDAAQTFDRLLARKVLIKNVSKMHPLLAN 342 (367)
T ss_dssp H--HT--THHHHHHHHHHHHHHHHHHHHHHHTSTTCEECCCS-SSEEEEECSCHHHHHHHHHTTTEECEECGGGCGGGTT
T ss_pred H--hc--CHHHHHHHHHHHHHHHHHHHHHHHhCCCcEECCCC-CeEEEEECCCHHHHHHHHHHCCeEEEECCccCCCCCC
Confidence 2 12 24567889999999999999999998338865321 1223455546788999999999988643 258
Q ss_pred eEEEEeccCCCHHHHHHHHHHHhC
Q 001990 506 TVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 506 ~lris~~~~~t~edid~ll~~l~~ 529 (985)
.+|++++ |++|+++++++|..
T Consensus 343 ~iRis~~---~~~~i~~~~~~l~~ 363 (367)
T 3euc_A 343 CLRVTVS---TPEENAQFLEAFAA 363 (367)
T ss_dssp EEEEECC---CHHHHHHHHHHHHH
T ss_pred EEEEecC---CHHHHHHHHHHHHH
Confidence 8999976 99999999999973
No 269
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.70 E-value=3e-16 Score=183.28 Aligned_cols=294 Identities=13% Similarity=0.058 Sum_probs=181.6
Q ss_pred HHHHHHHHHHh----CCCccceec-ChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcE------
Q 001990 635 NNLGEWLCTIT----GFDSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK------ 703 (985)
Q Consensus 635 ~el~~~la~l~----G~~~~~~~~-~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~------ 703 (985)
.++++.+++++ +.+...+++ ++++++...+ . .+. .++++|+++.+.|..+...++..|.+
T Consensus 114 ~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~-~---~l~-----~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~ 184 (449)
T 3qgu_A 114 GALREAVASTFYGHAGRAADEIFISDGSKCDIARI-Q---MMF-----GSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGT 184 (449)
T ss_dssp HHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-H---HHH-----CSSSCEEEEESCCTHHHHHHHHHTCSCCBCSS
T ss_pred HHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHH-H---HHh-----CCCCEEEEcCCCChhHHHHHHHcCCccccccc
Confidence 45667777776 555544444 4444444222 2 221 36788999998887777778888988
Q ss_pred ----EEEEeCCCCC--CCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccccc
Q 001990 704 ----IVSVGTDAKG--NINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQV 774 (985)
Q Consensus 704 ----v~~v~~~~~g--~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~--~di~eI~~la~~~g~lliVD~a~~~~~~ 774 (985)
++.+|+++++ ..|+++ . +++++|++++| |++|.+. +++++|+++|+++|+++++|++|.....
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~ 256 (449)
T 3qgu_A 185 GFDGIEYMVCNPDNHFFPDLSK-------A-KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYIS 256 (449)
T ss_dssp SBTTEEEEECCGGGTTCCCGGG-------C-CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCC
T ss_pred ccceeEEEecccccCCcCChhH-------c-CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhc
Confidence 9999987643 334322 1 57889999998 5789885 2489999999999999999999853111
Q ss_pred -CC--CC----CCcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccc
Q 001990 775 -GL--TS----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 775 -g~--~~----~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~ 847 (985)
+- .. ....+.++++.+++|+|+. +|.++|++++++++++...-.+..... ......+.+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~----- 323 (449)
T 3qgu_A 257 NPDCPKTIYEIPGADEVAIETCSFSKYAGF----TGVRLGWTVVPKALKYANGEPVHADWN----RVMTTCFNGA----- 323 (449)
T ss_dssp CTTSCSSGGGSTTGGGTEEEEEECSGGGTC----TTCCCEEEECCTTCBCTTSCBHHHHHH----HHHHHSCCCC-----
T ss_pred CCCCCCCHhhccCCCCcEEEEecchhhcCC----ccceeEEEecCHHHHhhhhhhHHHHHH----HHhhcccCCC-----
Confidence 10 01 1123457889999999853 478899999988776530000000000 0000001111
Q ss_pred hhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHH
Q 001990 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 848 g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~ 926 (985)
+.....++.+++...+.+.+.+..++..++++++.+.|++ ++.+.. +.+..+ +.++++ +.+..++.+.
T Consensus 324 -~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~--~~~~~~------~~~~~~~~~~ 392 (449)
T 3qgu_A 324 -SNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMGFSVYG--GDDAPY--IWVGFP------GKPSWDVFAE 392 (449)
T ss_dssp -CHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE--SSSSSE--EEEECT------TSCHHHHHHH
T ss_pred -CHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeeC--CCCeeE--EEEECC------CCCHHHHHHH
Confidence 1122222233333223344566677778889999999987 555532 212222 344543 4578889988
Q ss_pred HHHC-CCccCCCC-C-C-CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 927 LMDY-GFHGPTMS-W-P-VPGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 927 L~e~-Gi~~~~~~-~-p-v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
|.++ ||.+.... + + ..+.+||++. .+++||+ ++++.|++++++
T Consensus 393 l~~~~gI~v~pg~~f~~~~~~~iRis~~--~~~e~i~---~~l~~l~~~~~~ 439 (449)
T 3qgu_A 393 ILERCNIVTTPGSGYGPAGEGFVRASAF--GSRENIL---EAVRRFKEAYGK 439 (449)
T ss_dssp HHHHHCEECEEGGGGCGGGTTEEEEECC--SCHHHHH---HHHHHHHHHHC-
T ss_pred HHHHCCEEEecchHhCCCCCCeEEEEec--CCHHHHH---HHHHHHHHHHHh
Confidence 8875 99864321 1 1 2589999954 5999999 999999988754
No 270
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.70 E-value=1.5e-16 Score=183.66 Aligned_cols=297 Identities=11% Similarity=0.079 Sum_probs=176.3
Q ss_pred hcHHHHHHHHHHHHHHHhCCCc--cceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEE
Q 001990 628 QGYQEMFNNLGEWLCTITGFDS--FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~~~--~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~ 705 (985)
+|..++.+++.+++.+..+.+. ..+++++|++++..++. .+. .++++|+++.+.|..+...++..|.+++
T Consensus 79 ~g~~~lr~~la~~~~~~~~~~~~~~i~~t~g~~~al~~~~~---~~~-----~~gd~Vl~~~p~~~~~~~~~~~~g~~~~ 150 (413)
T 3t18_A 79 EGEKDYRKIVIDTLFGPYKPEGYISAIATPGGTGAIRSAIF---SYL-----DEGDPLICHDYYWAPYRKICEEFGRNFK 150 (413)
T ss_dssp TCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHH---HHC-----CSSCEEEEESSCCTHHHHHHHHHTCEEE
T ss_pred CCCHHHHHHHHHHHhcccCccccCcEEEcCccHHHHHHHHH---Hhc-----CCCCEEEECCCCcccHHHHHHHhCCeEE
Confidence 4655556566666655544431 23556666666544433 321 4678999999888777777888999999
Q ss_pred EEeC-CCCCCCCHHHHHHHHHhc-CCCeE-EEEEEcC--CCccccccC---HHHHHHHHH------HcCCEEEEEccccc
Q 001990 706 SVGT-DAKGNINIEELRKAAEAN-RDNLS-TLMVTYP--STHGVYEEG---IDEICKIIH------DNGGQVYMDGANMN 771 (985)
Q Consensus 706 ~v~~-~~~g~iDle~L~~~i~~~-~~~t~-~Vvi~~p--n~~G~i~~d---i~eI~~la~------~~g~lliVD~a~~~ 771 (985)
.+|. ++++.+|+++|+++++++ .++++ ++++++| |++|.+. + +++|+++|+ ++|+++++|+++.
T Consensus 151 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~- 228 (413)
T 3t18_A 151 TFEFFTDDFAFNIDVYKEAIDEGIRDSDRIASLINSPGNNPTGYSL-SDEEWDEVITFLKEKAEDKDKKITLIVDVAYL- 228 (413)
T ss_dssp EECCBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTTSTTCEEEEEEECTTG-
T ss_pred EeeccCCCCCcCHHHHHHHHHHHhhcCCCEEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHHhhccCCcEEEEEecccc-
Confidence 9998 455689999999999731 01555 7788888 5799987 4 555566666 8999999999973
Q ss_pred cccCCCC---C-----CcCCCc---EEEeCCcccccccCCCCCCcceeeee---cccccCcCCCCccccCCCCCCCCCCC
Q 001990 772 AQVGLTS---P-----GYIGAD---VCHLNLHKTFCIPHGGGGPGMGPIGV---KKHLAPFLPSHPVVSTGGIPAPEKSQ 837 (985)
Q Consensus 772 ~~~g~~~---~-----g~~g~D---i~~~s~hKtl~~p~g~GGPg~G~l~~---~~~l~~~lpg~~~g~~~~~~~~~~~~ 837 (985)
.+..-.. + ...+.| +++.|++|+|+. .|.++|++++ ++++.+.+........ + .
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~----~G~riG~~~~~~~~~~~~~~~~~~~~~~~-------~-~ 296 (413)
T 3t18_A 229 EFAGDGDQQRKFFEKFSNLPRNLFVVVAFSMSKSHTA----YGLRSGAAVGISSSKEIIEEFEASLAHSA-------R-C 296 (413)
T ss_dssp GGSSSSSTTTGGGGGGTTCCTTEEEEEEEEHHHHTTC----GGGCCEEEEEEESCHHHHHHHHHHHHHHH-------H-H
T ss_pred cccCChhhHHHHHHHHhhcCCCeeEEEEEecCccCCC----cCcCcEEEEEecCCHHHHHHHHHHHHHhh-------h-c
Confidence 1211110 0 112223 667788999854 3677999998 7766654421100000 0 0
Q ss_pred CCCCcccccchhhhHHHHHHHHHHHhc----hhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCc
Q 001990 838 PLGTIAAAPWGSALILPISYTYIAMMG----SKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGL 912 (985)
Q Consensus 838 ~t~~i~s~~~g~~~~~~~A~a~l~~lg----~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~ 912 (985)
.+.+.+ .....++.+++.... .+.+.+..++..++.+++.+.|++ ++.+. .+++.++ +.+++
T Consensus 297 ~~~~~~------~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~--~~~~~~~--~~~~~--- 363 (413)
T 3t18_A 297 NWSNGT------HAAQNILIELERAENKKIYEQELVDLRNMLKSRADVFVTAAKENKLTMI--PYFGGFF--TFIPT--- 363 (413)
T ss_dssp HTSSCC------HHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCB--CCCSSSC--EEEEC---
T ss_pred cccCCC------hHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc--CCCceEE--EEeCC---
Confidence 001111 111111112221110 112233445567777888888877 45442 2222222 12332
Q ss_pred cccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHH
Q 001990 913 KNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSL 971 (985)
Q Consensus 913 ~~~~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i 971 (985)
.+..++.+.|.++||.+... ++.+|++++..++++.++ ++.++|+++
T Consensus 364 -----~~~~~~~~~l~~~gv~v~~g----~~~iRis~~~~~~~~~l~---~l~~~l~~~ 410 (413)
T 3t18_A 364 -----DKAFDIVKDLEKENIFTIPS----AKGIRVAICGVGEEKIPK---LVQRLAFYT 410 (413)
T ss_dssp -----SCHHHHHHHHHHTTEECEEC----SSEEEECTTTSCGGGHHH---HHHHHHHHH
T ss_pred -----CCHHHHHHHHHhCCEEEecC----CCceEEEEeeCCHHHHHH---HHHHHHHHH
Confidence 36788999999999987532 478999998555544455 665555543
No 271
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.70 E-value=1.8e-15 Score=175.91 Aligned_cols=291 Identities=15% Similarity=0.160 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEc-CCCCCCcHHHHHhcCc---------
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIP-VSAHGTNPATAAMCGM--------- 702 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~-~~~Hg~~~~~~~~~G~--------- 702 (985)
...+++++++++++-....++.++|++++++++.+++.+ .++++||+. ..+|+.....+...|.
T Consensus 96 ~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~------~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~ 169 (434)
T 3l44_A 96 LEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAY------TGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPD 169 (434)
T ss_dssp HHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCSSGGGGBC-------CCCBS
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHh------hCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCC
Confidence 355788899999862233577788999887777766654 245677774 4567755433322221
Q ss_pred ----------EEEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcCC-CccccccC----HHHHHHHHHHcCCEEEEEc
Q 001990 703 ----------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG----IDEICKIIHDNGGQVYMDG 767 (985)
Q Consensus 703 ----------~v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~pn-~~G~i~~d----i~eI~~la~~~g~lliVD~ 767 (985)
++..+|.+ |+++|+++++++++++++|+++.++ +.|.+. + +++|.++|++||++||+|+
T Consensus 170 ~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~-~~~~~l~~l~~l~~~~~illI~DE 243 (434)
T 3l44_A 170 SAGVPQSIAQEVITVPFN-----NVETLKEALDKWGHEVAAILVEPIVGNFGIVE-PKPGFLEKVNELVHEAGALVIYDE 243 (434)
T ss_dssp STTCCHHHHTTEEEECTT-----CHHHHHHHHHHHGGGEEEEEECSSBCTTSCBC-CCTTHHHHHHHHHHTTTCEEEEEC
T ss_pred cCCCCCcCCCceEecCcc-----cHHHHHHHHHhCCCCEEEEEEcCCCCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEec
Confidence 23344432 8999999998654567777766543 567776 5 9999999999999999999
Q ss_pred cccccccCCCCCCc--------CCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCC
Q 001990 768 ANMNAQVGLTSPGY--------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPL 839 (985)
Q Consensus 768 a~~~~~~g~~~~g~--------~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t 839 (985)
+|. ++ ..+. ..+|++++ .|+|+ +|.++|++++++++++.+...... ...+|
T Consensus 244 v~~----g~-~~g~~~~~~~~~~~~di~t~--sK~~~-----~G~~iG~~~~~~~i~~~~~~~~~~---------~~~~t 302 (434)
T 3l44_A 244 VIT----AF-RFMYGGAQDLLGVTPDLTAL--GKVIG-----GGLPIGAYGGKKEIMEQVAPLGPA---------YQAGT 302 (434)
T ss_dssp TTT----TT-TSSSSCHHHHHTCCCSEEEE--EGGGG-----TTSSCEEEEECHHHHTTBTTTSSB---------CCCCT
T ss_pred ccc----ce-eccccHHHHHcCCCCCeeeh--hhhhc-----CCcCeeeEEEcHHHHHhhccCCCc---------ccCCC
Confidence 984 22 2221 23677765 48874 467899999998887655321000 00011
Q ss_pred CCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc---CCe--eEcCCCCceeEEEEEEecCccc
Q 001990 840 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPI--LFRGVNGTVAHEFIVDLRGLKN 914 (985)
Q Consensus 840 ~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~---~~i--~~~g~~~~~~~~~vv~~~~~~~ 914 (985)
.+ +++..++++.+.+..+..+.+ .++..++.+++++.|++. +.+ ...+. +. .+.+.+.....
T Consensus 303 --~~----~~~~a~aaa~aal~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-g~---~~~~~~~~~~~ 369 (434)
T 3l44_A 303 --MA----GNPASMASGIACLEVLQQEGL---YEKLDELGATLEKGILEQAAKHNIDITLNRL-KG---ALTVYFTTNTI 369 (434)
T ss_dssp --TT----TCHHHHHHHHHHHHHHTSTTH---HHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE-TT---EEEEEESSSCC
T ss_pred --CC----cCHHHHHHHHHHHHHHHcccH---HHHHHHHHHHHHHHHHHHHHhCCCCEEEEee-cc---EEEEEEecCcc
Confidence 11 233444555666666554443 345566677777777652 222 11111 11 12333321000
Q ss_pred --------cCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHHH
Q 001990 915 --------TAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTTF 977 (985)
Q Consensus 915 --------~~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~~ 977 (985)
.......++.+.|.++||.+.... .+.+|++ ..+|++|++ +++++|++++++++.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---~~~~rl~--~~~t~e~i~---~~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 370 EDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSK---YEAWFLT--TEHTKEDIE---YTIEAVGRAFAALAD 432 (434)
T ss_dssp CSHHHHHHSCHHHHHHHHHHHHHTTEECCSST---TCCEECC--TTCCHHHHH---HHHHHHHHHHHHHHH
T ss_pred cchhhccccCHHHHHHHHHHHHHCCeEEeecC---CCcEEEe--cccCHHHHH---HHHHHHHHHHHHHHh
Confidence 001123678889999999986443 2567774 578999999 999999999887764
No 272
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.70 E-value=4.2e-16 Score=180.78 Aligned_cols=291 Identities=16% Similarity=0.153 Sum_probs=186.0
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--- 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~~--- 289 (985)
..++++.+|+++|.+. +.++.+|++++.++++++ .. +||+|++++..|+++...+...++..|++++.+|.+
T Consensus 84 ~~~le~~lA~l~g~~~--~v~~~sG~~Ai~~al~al-~~--~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~ 158 (430)
T 3ri6_A 84 VEDLEQRLKNLTGALG--VLALGSGMAAISTAILTL-AR--AGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSL 158 (430)
T ss_dssp HHHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHH-CC--TTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHH
T ss_pred HHHHHHHHHHHHCCCc--EEEECCHHHHHHHHHHHH-hC--CCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHH
Confidence 3457789999999876 667889998888777665 23 889999999999999997765566789999999764
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001990 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~p~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++++| |++|.+.|+++|+++||++|++++|| +.++.+.+..|.++|+|++++|. |.|++| +
T Consensus 159 ~l~~ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD-~a~~~~~~~~~~~~g~div~~S~sK~l~g~-g-- 234 (430)
T 3ri6_A 159 AVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVD-TTMTPPYLLEAKRLGVDIEVLSSTKFISGG-G-- 234 (430)
T ss_dssp HHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEE-CTTSCTTTCCGGGGTCSEEEEECCCEEETT-E--
T ss_pred HHHHhhCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEE-CCCcccccCChHHcCCEEEEECCcccccCC-C--
Confidence 4555 7889999999998 78999999999999999999999995 46677777778899999999998 888643 1
Q ss_pred CCceEEEEEchh--hHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHH
Q 001990 367 GPHAAFLATSQE--YKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLK 444 (985)
Q Consensus 367 GP~~G~l~~~~~--~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~ 444 (985)
..-.|++.++.+ +.+ +++.-.. .+..|...|...+ +. ..++.-|. . .+++.+ |+...+.+.+.
T Consensus 235 ~~~gG~vv~~~~~~~~~--~~~~~~l-~~~~g~~~~i~~~--~~-~~~~~~g~--~--~~~~~a-----~l~l~~l~~l~ 299 (430)
T 3ri6_A 235 TSVGGVLIDHGLFEWKS--LPSLAPY-YAKAGPMAFLYKA--RK-EVFQNLGP--S--LSPHNA-----YLQSLGLETMA 299 (430)
T ss_dssp EECCEEEEECSCSCGGG--STTTHHH-HHHHGGGHHHHHH--HH-THHHHHCC--C--CCHHHH-----HHHHHHHHHHH
T ss_pred CceEEEEEECChHHhhh--ccchhhh-hhhhchhhHHHHH--HH-HHHHhcCC--C--CCHHHH-----HHHHhhhhhHH
Confidence 012356664322 210 1110000 0000000000000 00 00011111 0 012211 22333445566
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEc-CC-----CC----------cc-eEEEecCC---HHHHHHHHHHcCcee-----
Q 001990 445 TIAQRVHGLAGTFALGLKKLGTVEVQ-GL-----PF----------FD-TVKVKCAD---AHAIASAAYKIEMNL----- 499 (985)
Q Consensus 445 ~i~~~~~~~a~~l~~~L~~~g~~~~~-~~-----~~----------~~-~~~i~~~~---~~~l~~~L~~~Gi~~----- 499 (985)
...++..+++.++++.|++.++++.+ .+ |. .. .++|.+++ +.++.+.|.-.++-+
T Consensus 300 ~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~~~~~~~~~~l~~~~~~~s~G~~ 379 (430)
T 3ri6_A 300 LRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKEASYRFMDALKLIRRATNIHDN 379 (430)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHHCSSSEECSCCSCS
T ss_pred HHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCHHHHHHHHHhCCcceecCCCCCC
Confidence 66778889999999999988546532 21 10 22 57777765 444555544333211
Q ss_pred -ee---------------------ecCCeEEEEeccCCCHHHHHHHHHHH
Q 001990 500 -RV---------------------VDSNTVTASFDETTTLEDVDKLFIVF 527 (985)
Q Consensus 500 -~~---------------------~~~~~lris~~~~~t~edid~ll~~l 527 (985)
+. +.++.||+|++.-+.++-++.|-++|
T Consensus 380 ~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~E~~~dl~~dl~~al 429 (430)
T 3ri6_A 380 KSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGIEEIEDLKEDILQAL 429 (430)
T ss_dssp SCEEECTGGGC---------CGGGSCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred CceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHhh
Confidence 00 13578999999877777677776665
No 273
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.70 E-value=1e-15 Score=176.94 Aligned_cols=271 Identities=19% Similarity=0.189 Sum_probs=187.3
Q ss_pred HHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch---h
Q 001990 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK---D 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~~---~ 290 (985)
.++++.+|+++|.+. +.++.+|+++++++++++ . ++||+||+++..|+.+...++..++..|++++.+|.+ +
T Consensus 84 ~~l~~~la~~~g~~~--~~~~~sG~~Ai~~al~~l-~--~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~ 158 (414)
T 3ndn_A 84 SVFEERLRLIEGAPA--AFATASGMAAVFTSLGAL-L--GAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQ 158 (414)
T ss_dssp HHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHTT-C--CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTCHHH
T ss_pred HHHHHHHHHHHCCCc--EEEECCHHHHHHHHHHHH-h--CCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCCCHHH
Confidence 356789999999764 678899998888777665 2 3889999999999999888876566789999999764 4
Q ss_pred hhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCCCCcccceEEEecC-ccccccCCCCC
Q 001990 291 IDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYGG 367 (985)
Q Consensus 291 l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~p~~~GaDi~v~s~-k~lg~P~~~GG 367 (985)
+++ ++++|++|++.+| |.+|.+.|+++|+++|+++|+++++| +.++.+....|.++|+|+++.|. |.|+++ |.
T Consensus 159 l~~ai~~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livD-e~~~~~~~~~~~~~g~div~~S~sK~l~~~---G~ 234 (414)
T 3ndn_A 159 WERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLD-NVFATPLLQQGFPLGVDVVVYSGTKHIDGQ---GR 234 (414)
T ss_dssp HHHHTSSCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEE-CTTTHHHHCCCGGGTCSEEEEETTTTTTCS---SC
T ss_pred HHHhcCCCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEE-CCCcccccCCchhcCCCeEeccCCccccCC---CC
Confidence 555 7889999999998 78999999999999999999999995 45566655667789999999998 877532 21
Q ss_pred CceEEEEEchhhHh-cCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHH
Q 001990 368 PHAAFLATSQEYKR-MMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTI 446 (985)
Q Consensus 368 P~~G~l~~~~~~~~-~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i 446 (985)
+-+|+++++++.+. .+.. .++..|.. . .++. + ++...+.+.+...
T Consensus 235 ~~~G~vv~~~~~~~~~l~~-------------------------~~~~~g~~-~---~~~~---a--~~~~~~l~~l~~r 280 (414)
T 3ndn_A 235 VLGGAILGDREYIDGPVQK-------------------------LMRHTGPA-M---SAFN---A--WVLLKGLETLAIR 280 (414)
T ss_dssp CCCEEEEECHHHHTTHHHH-------------------------HHHHHCCC-C---CHHH---H--HHHHHHGGGHHHH
T ss_pred ceEEEEEECHHHHHHHHHH-------------------------HHHHcCCC-C---CHHH---H--HHHHHHHHHHHHH
Confidence 33689988876654 2200 00111111 0 1111 1 1223344567777
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEc--CC----C-----------CcceEEEecCC--------HHHHHHHHHHcCceee-
Q 001990 447 AQRVHGLAGTFALGLKKLGTVEVQ--GL----P-----------FFDTVKVKCAD--------AHAIASAAYKIEMNLR- 500 (985)
Q Consensus 447 ~~~~~~~a~~l~~~L~~~g~~~~~--~~----~-----------~~~~~~i~~~~--------~~~l~~~L~~~Gi~~~- 500 (985)
.++..+++.++.+.|++..+++.+ .. + ....+.|.+++ +.++.+.|...++.++
T Consensus 281 ~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~s~ 360 (414)
T 3ndn_A 281 VQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNL 360 (414)
T ss_dssp HHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEECSCC
T ss_pred HHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEcCCC
Confidence 788889999999999987445432 11 0 11246666543 4445555544443221
Q ss_pred --------------------------eecCCeEEEEeccCCCHHHHHHHHHHH
Q 001990 501 --------------------------VVDSNTVTASFDETTTLEDVDKLFIVF 527 (985)
Q Consensus 501 --------------------------~~~~~~lris~~~~~t~edid~ll~~l 527 (985)
.+.++.+|+|++..+.++.++.|.++|
T Consensus 361 G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~e~~~dli~dl~~al 413 (414)
T 3ndn_A 361 GDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGLEDTDDLIADIDRAL 413 (414)
T ss_dssp SCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred CCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHhh
Confidence 013578999999887777777777766
No 274
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.69 E-value=5.1e-15 Score=171.96 Aligned_cols=324 Identities=12% Similarity=0.047 Sum_probs=202.3
Q ss_pred CCCCCCCCCcHHHHHHHHhCC--ccccccCCChhhHhhHHHHHHHHHHHHHHHhhC------CCCcceeeccchHHHHHH
Q 001990 172 GMGYYNTHVPPVILRNIMENP--AWYTQYTPYQAEIAQGRLESLLNFQTMIADLTG------LPMSNASLLDEGTAAAEA 243 (985)
Q Consensus 172 G~g~~~~~~p~~v~~~i~~~~--~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g------~~~~~~sl~~~~ta~~ea 243 (985)
+.|..+...|+.+.+++.+.- .++..|.+.+ | +.++++.+|++++ .++.++.+++|+|.++++
T Consensus 50 ~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~-----g----~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~ 120 (437)
T 3g0t_A 50 EMGVPGLPAPQIGIETEIQKLREGVASIYPNLD-----G----LPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFV 120 (437)
T ss_dssp CCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCTT-----C----CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHH
T ss_pred cCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCCC-----C----hHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHH
Confidence 445555556666654443211 2224554422 1 1245567777766 456789899999988888
Q ss_pred HHHHhhhhcCCCC--EEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---------hhhhc-c-CCCEeEEEEEcC-CCC
Q 001990 244 MAMCNNIQKGKKK--TFIIASNCHPQTIDICITRADGFDIKVVVSDL---------KDIDY-K-SGDVCGVLVQYP-GTE 309 (985)
Q Consensus 244 ~~~a~~~~~~~g~--~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~---------~~l~~-l-~~~t~~V~v~~p-n~~ 309 (985)
++.++.. .++|| +|+++...|+++...++. .|.+++.++. +++++ + ++++++|++.+| |.+
T Consensus 121 ~~~~l~~-~~~gd~~~Vl~~~p~~~~~~~~~~~----~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~npt 195 (437)
T 3g0t_A 121 SFLVANR-THKNREYGTLFIDPGFNLNKLQCRI----LGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPT 195 (437)
T ss_dssp HHHHHTT-SCTTCSCCEEEEESCCHHHHHHHHH----HTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTTT
T ss_pred HHHHHhc-CCCCCccEEEEeCCCcHhHHHHHHH----cCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCCC
Confidence 7766521 02788 999999999998888764 3566666543 34555 6 778999999998 679
Q ss_pred eeecc---HHHHHHHHHhCCcEEEEEeccccccCC-------------CCC-CcccceEEEecC-ccccccCCCCCCceE
Q 001990 310 GEVLD---YGDFIKNAHANGVKVVMATDLLALTIL-------------KPP-GELGADIVVGSA-QRFGVPMGYGGPHAA 371 (985)
Q Consensus 310 G~i~d---l~~I~~~a~~~galliV~a~~~alg~l-------------~~p-~~~GaDi~v~s~-k~lg~P~~~GGP~~G 371 (985)
|.+.+ +++|+++|+++|+++++|. ..+.... ... ...+.+++++|. |.++.| |..+|
T Consensus 196 G~~~~~~~l~~i~~~a~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G 270 (437)
T 3g0t_A 196 WQCMTDEELRIIGELATKHDVIVIEDL-AYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYA----GQRIG 270 (437)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCEEEEEC-TTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCG----GGCCE
T ss_pred CCcCCHHHHHHHHHHHHHCCcEEEEEc-chhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCc----cceeE
Confidence 98875 7888999999999999953 3332111 111 136778999997 877532 34579
Q ss_pred EEEEchhhHh-cCCCceeeeeecCCCCcceEEecccccccccccc-cCCCccchhHHHHHHHHHHHHHc--CcchHHHHH
Q 001990 372 FLATSQEYKR-MMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDK-ATSNICTAQALLANMAAMYAVYH--GPEGLKTIA 447 (985)
Q Consensus 372 ~l~~~~~~~~-~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~-atsni~t~~~l~a~~aa~y~~~~--g~~Gl~~i~ 447 (985)
++++++++++ .++.-.-+. .+.. +. .+..++.+ .+.+..+.....+..+++ ... ....++++.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~----~~~~-~~------~~~~~~~~~~~~~~~~~~~~~a~~~~l--~~~~~~~~~~~~~~ 337 (437)
T 3g0t_A 271 VLMISGKLYEREYPDLEESF----GRLR-FG------EALSSSALYALSSGATHSAQWGMAAML--KACNDGEYNFRDSV 337 (437)
T ss_dssp EEEECHHHHHCBCGGGHHHH----SCSB-HH------HHHHTTHHHHHHSSSCHHHHHHHHHHH--HHHHTTSCCHHHHH
T ss_pred EEEECHHHhhhhhhcccccc----cccc-hh------HHHHHHHHhhhcCCCCHHHHHHHHHHH--hCcHhHHHHHHHHH
Confidence 9999988887 632111000 0000 00 00011111 111111112222222222 221 111288899
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEc------CC-CCcceEEEecCC--HHHHHHHHHHcCceeeeec------CCeEEEEec
Q 001990 448 QRVHGLAGTFALGLKKLGTVEVQ------GL-PFFDTVKVKCAD--AHAIASAAYKIEMNLRVVD------SNTVTASFD 512 (985)
Q Consensus 448 ~~~~~~a~~l~~~L~~~g~~~~~------~~-~~~~~~~i~~~~--~~~l~~~L~~~Gi~~~~~~------~~~lris~~ 512 (985)
++..++.+++++.|+++| +++. .+ ....-+.+.+++ ..++.++|.++||.+.... ++.+|+|++
T Consensus 338 ~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~iRis~~ 416 (437)
T 3g0t_A 338 IEYGRKARIMKKMFLDNG-FNIVYDKDGNEPLADGFYFTVGYKGMDSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICTS 416 (437)
T ss_dssp HHHHHHHHHHHHHHHTTT-EEESSCEETTEECCSSSEEEEEETTCCHHHHHHHHHHTTEECEESTTTTCCCTTCEEEECS
T ss_pred HHHHHHHHHHHHHHHHcC-CEEeccccCCCCCceeEEEEEecCCCCHHHHHHHHHHcCeEEeeccccCCCCCCEEEEEEe
Confidence 999999999999999996 8887 12 111223445443 8899999999999886542 277999999
Q ss_pred cCCCHHHHHHHHHHHhC
Q 001990 513 ETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 513 ~~~t~edid~ll~~l~~ 529 (985)
..+++|+++++++|..
T Consensus 417 -~~~~e~i~~~~~~l~~ 432 (437)
T 3g0t_A 417 -LLPESQFPDLEKRLQM 432 (437)
T ss_dssp -SSCGGGHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHH
Confidence 4499999999999863
No 275
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.69 E-value=1.5e-14 Score=161.65 Aligned_cols=295 Identities=15% Similarity=0.112 Sum_probs=197.2
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhh
Q 001990 171 IGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI 250 (985)
Q Consensus 171 lG~g~~~~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~ 250 (985)
++.+..|...|+.+.+.+.+... .++.|. . . ...++++.+|+++|.++.++.+++|+|.++..++.++
T Consensus 21 l~~n~~~~~~~~~v~~a~~~~~~---~~~~y~-~--~----~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~~-- 88 (337)
T 3p1t_A 21 LAFNENPEAVEPRVQAAIAAAAA---RINRYP-F--D----AEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEF-- 88 (337)
T ss_dssp CSSCCCCSCCCHHHHHHHHHHGG---GTTSCC-T--T----HHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHS--
T ss_pred eeCCCCCCCCCHHHHHHHHHhhh---hhccCC-C--C----chHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHhc--
Confidence 34454455577777655554322 223331 1 1 2456788999999998888988999998877766554
Q ss_pred hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch--------hhhccCCCEeEEEEEcC-CCCeeeccHHHHHHH
Q 001990 251 QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK--------DIDYKSGDVCGVLVQYP-GTEGEVLDYGDFIKN 321 (985)
Q Consensus 251 ~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~~--------~l~~l~~~t~~V~v~~p-n~~G~i~dl~~I~~~ 321 (985)
+||+|++++..|+++...+ +..|++++.++.+ ++++. .++++|++.+| |++|.+.|++++.++
T Consensus 89 ---~gd~vl~~~p~~~~~~~~~----~~~g~~~~~v~~~~~~~~d~~~l~~~-~~~~~v~i~~p~nptG~~~~~~~l~~l 160 (337)
T 3p1t_A 89 ---SSMRFVTAWPGFDGYRARI----AVSGLRHFEIGLTDDLLLDPNDLAQV-SRDDCVVLANPSNPTGQALSAGELDQL 160 (337)
T ss_dssp ---TTSEEEEESSSCSHHHHHH----TTSCCEEEEECBCTTSSBCHHHHTTC-CTTEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred ---CCCeEEEeCCCcHHHHHHH----HHcCCEEEEecCCCCCCCCHHHHHhh-cCCCEEEEeCCCCCCCCCCCHHHHHHH
Confidence 6799999999999887765 4568999888653 23332 46789999998 789999999999999
Q ss_pred HHhCCcEEEEEecccc-ccC--CCCCCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCC
Q 001990 322 AHANGVKVVMATDLLA-LTI--LKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGK 397 (985)
Q Consensus 322 a~~~galliV~a~~~a-lg~--l~~p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~ 397 (985)
++.++. ++++ +..+ ++. ...+...+.|++++|. |.|+.| |..+|++++++++++.+...
T Consensus 161 ~~~~~~-~ivD-ea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~----G~r~G~~~~~~~~~~~l~~~----------- 223 (337)
T 3p1t_A 161 RQRAGK-LLID-ETYVDYSSFRARGLAYGENELVFRSFSKSYGLA----GLRLGALFGPSELIAAMKRK----------- 223 (337)
T ss_dssp HHHCSE-EEEE-CTTGGGSSCSSSCCCCBTTEEEEEESSSTTCCT----TTCCEEEECCHHHHHHHHTT-----------
T ss_pred HHhCCc-EEEE-CCChhhccccccccccCCCEEEEeeCchhccCc----chheEEEEeCHHHHHHHHhh-----------
Confidence 999996 5554 3332 221 1123345678999997 877532 45679999988877655110
Q ss_pred cceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcce
Q 001990 398 PALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDT 477 (985)
Q Consensus 398 ~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~ 477 (985)
+...+.|. ....++.+ .+-..+.+++..++..++.+++.+.|+++| +++... ...-
T Consensus 224 ---------------~~~~~~~~---~~~~a~~~----~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~-~~~~ 279 (337)
T 3p1t_A 224 ---------------QWFCNVGT---LDLHALEA----ALDNDRAREAHIAKTLAQRRRVADALRGLG-YRVASS-EANF 279 (337)
T ss_dssp ---------------SCTTCSCH---HHHHHHHH----HHTCHHHHHHHHHHHHHHHHHHHHHHHHTT-CCBCCC-SSSE
T ss_pred ---------------cCCCCCCH---HHHHHHHH----HhCCHHHHHHHHHHHHHHHHHHHHHHHHCc-CEECCC-CCeE
Confidence 00011111 11212211 122233466777778888899999999986 776532 1222
Q ss_pred EEEecCCHHHHHHHHHHcCceeeeec----CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 478 VKVKCADAHAIASAAYKIEMNLRVVD----SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 478 ~~i~~~~~~~l~~~L~~~Gi~~~~~~----~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+.+..+...++.+.|.++||.++... ++.+|+|++ +++|+++++++|..
T Consensus 280 ~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~---~~~~~~~l~~al~~ 332 (337)
T 3p1t_A 280 VLVENAAGERTLRFLRERGIQVKDAGQFGLHHHIRISIG---REEDNDRLLAALAE 332 (337)
T ss_dssp EEEECTTTHHHHHHHHHTTEECEEGGGGTCCSEEEEECC---CHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHCCeEEEECccCCCCCeEEEecC---CHHHHHHHHHHHHH
Confidence 44555446678888999999886532 589999987 79999999999974
No 276
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.69 E-value=2.8e-15 Score=175.19 Aligned_cols=311 Identities=15% Similarity=0.144 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHHHhCCCcc-ceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCCCcHHHHHhcCc-------
Q 001990 632 EMFNNLGEWLCTITGFDSF-SLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM------- 702 (985)
Q Consensus 632 ~~~~el~~~la~l~G~~~~-~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv-~~~~Hg~~~~~~~~~G~------- 702 (985)
+...++++.++++++.+.. .++.++|++++++++.+++.|...+|..++++||+ ...+|+.....+...|.
T Consensus 93 ~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~ 172 (449)
T 3a8u_X 93 PLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLF 172 (449)
T ss_dssp HHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhcccc
Confidence 3566888999999876543 46778899888888777776655555435678887 55678776655544331
Q ss_pred -----EEEEEeCCCCC-----CCC--------HHHHHHHHHhcC-CCeEEEEEEcC-CCccccccC----HHHHHHHHHH
Q 001990 703 -----KIVSVGTDAKG-----NIN--------IEELRKAAEANR-DNLSTLMVTYP-STHGVYEEG----IDEICKIIHD 758 (985)
Q Consensus 703 -----~v~~v~~~~~g-----~iD--------le~L~~~i~~~~-~~t~~Vvi~~p-n~~G~i~~d----i~eI~~la~~ 758 (985)
.++.++++... .+| +++|+++|++++ +++++|+++.. +.+|.+. + +++|+++|++
T Consensus 173 ~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~-~~~~~l~~l~~l~~~ 251 (449)
T 3a8u_X 173 GQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLV-PPEGYLKRNREICNQ 251 (449)
T ss_dssp CCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBC-CCTTHHHHHHHHHHH
T ss_pred CCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCcc-CCHHHHHHHHHHHHH
Confidence 24445543211 246 999999997543 36666665432 3589876 6 9999999999
Q ss_pred cCCEEEEEcccc-ccccCCC-CCCc--CCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCC
Q 001990 759 NGGQVYMDGANM-NAQVGLT-SPGY--IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPE 834 (985)
Q Consensus 759 ~g~lliVD~a~~-~~~~g~~-~~g~--~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~ 834 (985)
||+++|+|++|. .+..+.. .... ..+|++++ +|+|+ .|+..+|++++++++.+.+....... +. ..
T Consensus 252 ~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~s~--sK~l~----~G~~~~G~~~~~~~~~~~l~~~~~~~--~~--~~ 321 (449)
T 3a8u_X 252 HNILLVFDEVITGFGRTGSMFGADSFGVTPDLMCI--AKQVT----NGAIPMGAVIASTEIYQTFMNQPTPE--YA--VE 321 (449)
T ss_dssp HTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEE--CGGGG----TTSSCCEEEEEEHHHHHHHHTCSSCT--TS--CS
T ss_pred hCCEEEEeccccCccccCcchhhhhcCCCCCEEEE--ccccc----CCCCceEEEEECHHHHHHhhccCccc--cc--cc
Confidence 999999999984 2221110 0011 23688755 49884 22255888888877665432110000 00 00
Q ss_pred CCCCCCCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc--cCCeeE--cCCCCceeEEEEEEec
Q 001990 835 KSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK--HYPILF--RGVNGTVAHEFIVDLR 910 (985)
Q Consensus 835 ~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~--~~~i~~--~g~~~~~~~~~vv~~~ 910 (985)
...+ .+.+ +++..++++.+.+..+..++ ..++..++.++++++|++ .+.+.. .+ .+. .+.+++.
T Consensus 322 ~~~~-~t~~----~~~~~~aa~~aal~~~~~~~---~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~---~~~i~~~ 389 (449)
T 3a8u_X 322 FPHG-YTYS----AHPVACAAGLAALCLLQKEN---LVQSVAEVAPHFEKALHGIKGAKNVIDIRN-FGL---AGAIQIA 389 (449)
T ss_dssp SCCC-CTTT----TCHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTTTTSTTEEEEEE-ETT---EEEEEEC
T ss_pred cccc-CCCc----ccHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHhcCCCeEEEee-eEE---EEEEEEe
Confidence 0000 1111 13333444555565554443 345666778888888876 132211 11 111 2344543
Q ss_pred CccccCCC--CHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 911 GLKNTAGI--EPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 911 ~~~~~~g~--~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
.. .... +..++.+.|.++||.+... .+.+|++++..+|++|++ +++++|++++++
T Consensus 390 ~~--~~~~~~~~~~~~~~l~~~Gv~v~~~----g~~iRis~~~~~t~~~i~---~~l~~l~~~l~~ 446 (449)
T 3a8u_X 390 PR--DGDAIVRPFEAGMALWKAGFYVRFG----GDTLQFGPTFNSKPQDLD---RLFDAVGEVLNK 446 (449)
T ss_dssp CB--TTBSSHHHHHHHHHHHHHTEECEEE----TTEEEECCCTTCCHHHHH---HHHHHHHHHHHH
T ss_pred cC--cccccccHHHHHHHHHHCCcEEecC----CCEEEEECCCcCCHHHHH---HHHHHHHHHHHH
Confidence 10 0011 2347899999999987532 278999999999999999 999999988764
No 277
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.69 E-value=2e-15 Score=172.32 Aligned_cols=273 Identities=12% Similarity=0.108 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001990 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~-- 288 (985)
+...++++.+|+++|++ ...++.+||.+++.++.++. ++||+|+++...|+++...++ ..|.+++.++.
T Consensus 84 ~~~~~l~~~la~~~g~~--~~i~~~sGt~a~~~~~~~~~---~~gd~v~~~~~~~~~~~~~~~----~~g~~~~~~~~~d 154 (384)
T 1bs0_A 84 VVHQALEEELAEWLGYS--RALLFISGFAANQAVIAAMM---AKEDRIAADRLSHASLLEAAS----LSPSQLRRFAHND 154 (384)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHC---CTTCEEEEETTCCHHHHHHHH----TSSSEEEEECTTC
T ss_pred HHHHHHHHHHHHHhCCC--cEEEeCCcHHHHHHHHHHhC---CCCcEEEEcccccHHHHHHHH----HcCCCEEEeCCCC
Confidence 44567889999999986 35677777877777665542 378999999999999988875 35888888764
Q ss_pred -hhhhc-cCC---CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCC---C--CCc--ccceEEEec
Q 001990 289 -KDIDY-KSG---DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK---P--PGE--LGADIVVGS 355 (985)
Q Consensus 289 -~~l~~-l~~---~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~---~--p~~--~GaDi~v~s 355 (985)
+++++ +++ ++++|++.+| |.+|.+.|+++|.++|+++|+++++| +..+.+... . +.. .+.|++++|
T Consensus 155 ~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D-e~~~~~~~~~~~~~~~~~~~~~~di~~~s 233 (384)
T 1bs0_A 155 VTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVD-DAHGTGVIGEQGRGSCWLQKVKPELLVVT 233 (384)
T ss_dssp HHHHHHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEE-CTTTTTTSSGGGCCHHHHTTCCCSEEEEE
T ss_pred HHHHHHHHHhcCCCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEE-CCcccceecCCCCchHHhcCCCCcEEEee
Confidence 45555 432 4788888877 78999999999999999999999995 344444321 1 111 458999999
Q ss_pred C-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHH
Q 001990 356 A-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY 434 (985)
Q Consensus 356 ~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y 434 (985)
. |.++ | || |++++++++++.+... + ..| ..+.+. +.....+..+++
T Consensus 234 ~sK~~~-~-----~G-G~~~~~~~~~~~l~~~---------~-~~~--------------~~~~~~-~~~~~~~~~~al- 280 (384)
T 1bs0_A 234 FGKGFG-V-----SG-AAVLCSSTVADYLLQF---------A-RHL--------------IYSTSM-PPAQAQALRASL- 280 (384)
T ss_dssp SSSTTS-S-----CC-EEEEECHHHHHHHHHH---------C-HHH--------------HSSBCC-CHHHHHHHHHHH-
T ss_pred ccchhh-c-----cC-cEEEeCHHHHHHHHHh---------c-hhh--------------hcCCCC-CHHHHHHHHHHH-
Confidence 8 7775 2 33 8999998877654100 0 000 001111 111222223333
Q ss_pred HHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcC-CCCcceEEEecCC-HHHHHHHHHHcCceeeeec-------CC
Q 001990 435 AVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG-LPFFDTVKVKCAD-AHAIASAAYKIEMNLRVVD-------SN 505 (985)
Q Consensus 435 ~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~~~~~~~~i~~~~-~~~l~~~L~~~Gi~~~~~~-------~~ 505 (985)
..+....++++.++..++.+++.+.|+++| +++.. ...+-.+.+.... ..++.++|.++||.+.... .+
T Consensus 281 -~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~ 358 (384)
T 1bs0_A 281 -AVIRSDEGDARREKLAALITRFRAGVQDLP-FTLADSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTA 358 (384)
T ss_dssp -HHHHSHHHHHHHHHHHHHHHHHHHHHTTSS-CEECSCCSSBCCEEEESHHHHHHHHHHHHHTTEECCEECTTSSCTTCE
T ss_pred -HHHhccccHHHHHHHHHHHHHHHHHHHhcC-CcccCCCCCEEEEEeCCHHHHHHHHHHHHHCCcEEEeecCCCCCCCCc
Confidence 333211567888999999999999999987 88763 2222223332111 6789999999999876431 26
Q ss_pred eEEEEeccCCCHHHHHHHHHHHh
Q 001990 506 TVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 506 ~lris~~~~~t~edid~ll~~l~ 528 (985)
.+|++++..+|++|+++++++|.
T Consensus 359 ~~Ri~~~~~~~~~~i~~~~~~l~ 381 (384)
T 1bs0_A 359 RLRLTLTAAHEMQDIDRLLEVLH 381 (384)
T ss_dssp EECCBCCTTCCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCHHHHHHHHHHHH
Confidence 89999999999999999999986
No 278
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.69 E-value=3.8e-15 Score=172.49 Aligned_cols=285 Identities=17% Similarity=0.137 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHHhCCC-c-cceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCCCcHHHHHhcC--------
Q 001990 633 MFNNLGEWLCTITGFD-S-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPATAAMCG-------- 701 (985)
Q Consensus 633 ~~~el~~~la~l~G~~-~-~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~-~~Hg~~~~~~~~~G-------- 701 (985)
...++++.+++++|.+ . ..++.++|++++..++.+++.+ ++++||+++ .+|+.....+...|
T Consensus 87 ~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~-------~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~ 159 (419)
T 2eo5_A 87 PQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNT-------GRKYIIAFLGGFHGRTFGSISLTASKAVQRSI 159 (419)
T ss_dssp HHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTT-------SCCEEEEETTCCCCSSHHHHHHCCSCGGGGCS
T ss_pred HHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHh-------hCCcEEEECCCcCCCCHhhHhhcCCccccccc
Confidence 3557888999999986 3 3466788888776665554421 257788766 67877765553322
Q ss_pred -----cEEEEEeCCCCCC----------------CCHHHHH-HHHHhcC--CCeEEEEEEcC--CCccccccC----HHH
Q 001990 702 -----MKIVSVGTDAKGN----------------INIEELR-KAAEANR--DNLSTLMVTYP--STHGVYEEG----IDE 751 (985)
Q Consensus 702 -----~~v~~v~~~~~g~----------------iDle~L~-~~i~~~~--~~t~~Vvi~~p--n~~G~i~~d----i~e 751 (985)
.+++.+|.+.+.. +|+++|+ ++++++. +++++|++ +| |++|.+. + +++
T Consensus 160 ~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~-~p~~~~tG~~~-~~~~~l~~ 237 (419)
T 2eo5_A 160 VGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFF-EPIQGEGGYVI-PPKNFFAE 237 (419)
T ss_dssp SCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEE-CSSBTTTTSBC-CCTTHHHH
T ss_pred cCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEE-eCccCCCCCcc-CCHHHHHH
Confidence 2577788754422 4789999 9987431 35665554 55 3579755 4 999
Q ss_pred HHHHHHHcCCEEEEEcccc-ccccCCC-CCC--cCCCcEEEeCCcccccccCCCCC-CcceeeeecccccCcCCCCcccc
Q 001990 752 ICKIIHDNGGQVYMDGANM-NAQVGLT-SPG--YIGADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVS 826 (985)
Q Consensus 752 I~~la~~~g~lliVD~a~~-~~~~g~~-~~g--~~g~Di~~~s~hKtl~~p~g~GG-Pg~G~l~~~~~l~~~lpg~~~g~ 826 (985)
|+++|+++|+++|+|++|. .+..+.. ... ....|++++ .|+|+ +| .++|++++++++. .+.+. .+
T Consensus 238 l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~--sK~~~-----~G~~riG~~~~~~~~~-~~~~~-~~- 307 (419)
T 2eo5_A 238 LQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITL--AKALG-----GGIMPIGATIFRKDLD-FKPGM-HS- 307 (419)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGG-----TTTSCCEEEEEEGGGC-CC-------
T ss_pred HHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEe--ccccc-----CCccceEEEEEchHhh-cCCcc-cC-
Confidence 9999999999999999985 2211110 001 234687755 48874 36 7899999998877 55211 10
Q ss_pred CCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEE
Q 001990 827 TGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFI 906 (985)
Q Consensus 827 ~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~v 906 (985)
.+ .+. ++..++++.+++..+. +..++..+++++|.+.|++.+.. ..+ .+. .+.
T Consensus 308 -----------~t--~~~----n~~~~~aa~aal~~~~-----~~~~~~~~~~~~l~~~L~~~~~~-~~~-~g~---~~~ 360 (419)
T 2eo5_A 308 -----------NT--FGG----NALACAIGSKVIDIVK-----DLLPHVNEIGKIFAEELQGLADD-VRG-IGL---AWG 360 (419)
T ss_dssp ------------C--CCC----CHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHTTSSSE-EEE-ETT---EEE
T ss_pred -----------CC--CCC----CHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhh-eEe-eeE---EEE
Confidence 11 111 2223333444454332 24456677888999998764111 111 111 233
Q ss_pred EEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 907 VDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 907 v~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
+++.+ .+.... +.+.|.++||.+.... .+.+||+++..+|++|++ +++++|++++++
T Consensus 361 i~~~~----~~~~~~-~~~~l~~~Gv~v~~~~---~~~lRis~~~~~t~e~i~---~~l~~l~~~l~~ 417 (419)
T 2eo5_A 361 LEYNE----KKVRDR-IIGESFKRGLLLLPAG---RSAIRVIPPLVISEEEAK---QGLDILKKVIKV 417 (419)
T ss_dssp EECSC----HHHHHH-HHHHHHHTTEECEEET---TTEEEECCCTTCCHHHHH---HHHHHHHHHHHH
T ss_pred EEEec----CccHHH-HHHHHHHCCCEEecCC---CCEEEEECCCCCCHHHHH---HHHHHHHHHHHh
Confidence 55420 001245 8889999999875432 478999999999999999 999999988764
No 279
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.69 E-value=1.5e-15 Score=177.68 Aligned_cols=299 Identities=15% Similarity=0.131 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHHhCCC--ccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCCCcHHHHHhcC-------
Q 001990 632 EMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG------- 701 (985)
Q Consensus 632 ~~~~el~~~la~l~G~~--~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv-~~~~Hg~~~~~~~~~G------- 701 (985)
+...+++++++++++.+ ...++++||++++++++.+++.| .++++||+ ...+||.........|
T Consensus 104 ~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~------~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~ 177 (451)
T 3oks_A 104 EGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSH------THKPAVVAFDHAYHGRTNLTMALTAKVMPYKD 177 (451)
T ss_dssp HHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTT
T ss_pred HHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHh------cCCCeEEEEcCCcCCccHHHHHhcCCCccccc
Confidence 34668889999998743 23577899999988888777654 24566775 5578887766544322
Q ss_pred ------cEEEEEeCCCC------C-------CCCHHHHHHHHHhc--CCCeEEEEEEcCC-CccccccC---HHHHHHHH
Q 001990 702 ------MKIVSVGTDAK------G-------NINIEELRKAAEAN--RDNLSTLMVTYPS-THGVYEEG---IDEICKII 756 (985)
Q Consensus 702 ------~~v~~v~~~~~------g-------~iDle~L~~~i~~~--~~~t~~Vvi~~pn-~~G~i~~d---i~eI~~la 756 (985)
..+..+|++.. | ..+++.+++.+++. .+++++|+++..+ +.|++.++ +++|+++|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~ 257 (451)
T 3oks_A 178 GFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWC 257 (451)
T ss_dssp TCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHH
T ss_pred CCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHH
Confidence 14566665411 0 12355555666531 2355555554333 46666521 99999999
Q ss_pred HHcCCEEEEEccccccccCCCCC---C--cCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCC
Q 001990 757 HDNGGQVYMDGANMNAQVGLTSP---G--YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIP 831 (985)
Q Consensus 757 ~~~g~lliVD~a~~~~~~g~~~~---g--~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~ 831 (985)
++||+++|+|++|. +++-.... . ...+|++++ .|+|+ +|.++|++++++++++.+.....+
T Consensus 258 ~~~g~~lI~DEv~~-g~g~~g~~~~~~~~~~~pdi~t~--sK~l~-----~G~~iG~v~~~~~~~~~~~~~~~~------ 323 (451)
T 3oks_A 258 RKNDVVFIADEVQT-GFARTGAMFACEHEGIDPDLIVT--AKGIA-----GGLPLSAVTGRAEIMDSPHVSGLG------ 323 (451)
T ss_dssp HHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEEEE--CGGGG-----TTSSCEEEEEEHHHHTCSCTTSBC------
T ss_pred HHcCCEEEEEeccc-CCCccccchhhhhcCCCCCeeee--hhhhh-----CCcceEEEEECHHHHhhhcCCCcC------
Confidence 99999999999984 22111110 1 123688865 48884 357889999998887765421110
Q ss_pred CCCCCCCCCCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc---CCee--EcCCCCceeEEEE
Q 001990 832 APEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFI 906 (985)
Q Consensus 832 ~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~---~~i~--~~g~~~~~~~~~v 906 (985)
. ..+ +++..++++.+.+..+..+++ .++..++.+++++.|++. +... ..+. +.+ +.
T Consensus 324 ------~--t~~----~~~~~~aaa~aal~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-G~~---~~ 384 (451)
T 3oks_A 324 ------G--TYG----GNPIACAAALATIETIESEGL---VARAQQIEKIMKDRLGRLQAEDDRIGDVRGR-GAM---IA 384 (451)
T ss_dssp ------C--SSS----SCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE-TTE---EE
T ss_pred ------C--CCC----CCHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHHHHHhhCCCeEEEEEe-eEE---EE
Confidence 1 111 233444555566665544443 345556667777777642 2221 1111 222 22
Q ss_pred EEecC--ccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHH
Q 001990 907 VDLRG--LKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 907 v~~~~--~~~~~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
+.+.. .+...+....++.+.|.++|+.+.... +..+.+|++++..+|++||+ +++++|+++++
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~~iRi~~~~~~t~e~i~---~~l~~l~~~l~ 449 (451)
T 3oks_A 385 MELVKAGTTEPDADLTKALCAGAHAAGVIVLSCG-TYGNVVRFLPPLSIGDDLLN---EGLDVLEEVLR 449 (451)
T ss_dssp EEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEEC-TTSCEEEECCCTTCCHHHHH---HHHHHHHHHHH
T ss_pred EEEecCccCCCCHHHHHHHHHHHHhCCcEEecCC-CCCCEEEEECCCCCCHHHHH---HHHHHHHHHHh
Confidence 33310 000011235678999999999875322 12478999999999999999 99999998765
No 280
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.69 E-value=1e-15 Score=175.38 Aligned_cols=277 Identities=15% Similarity=0.138 Sum_probs=185.5
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~---- 288 (985)
..++++.+|+++|.+ ++.++.+||.++++++.+++.. +||+|+++...|+++...++. .|++++.++.
T Consensus 58 ~~~l~~~la~~~~~~--~~i~~~~gt~al~~~l~~~~~~--~gd~vl~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~ 129 (391)
T 3dr4_A 58 IVEFEKAFADYCGVK--HAIACNNGTTALHLALVAMGIG--PGDEVIVPSLTYIASANSVTY----CGATPVLVDNDPRT 129 (391)
T ss_dssp HHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHTCC--TTCEEEEESSSCTHHHHHHHH----TTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCCC--CcCEEEECCCchHHHHHHHHH----CCCEEEEEecCccc
Confidence 456889999999987 4778899998888877766433 789999999999999888753 5888888754
Q ss_pred -----hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCC---CCcccceEEEec--C-
Q 001990 289 -----KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP---PGELGADIVVGS--A- 356 (985)
Q Consensus 289 -----~~l~~-l~~~t~~V~v~~pn~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~---p~~~GaDi~v~s--~- 356 (985)
+++++ +++++++|+++ |++|.+.|+++|.++|+++|+++++| +..+.|.... .+.+ .|+++.| .
T Consensus 130 ~~~d~~~l~~~~~~~~~~v~~~--n~tG~~~~~~~i~~l~~~~~~~li~D-~a~~~g~~~~~~~~~~~-~di~~~S~s~~ 205 (391)
T 3dr4_A 130 FNLDAAKLEALITPRTKAIMPV--HLYGQICDMDPILEVARRHNLLVIED-AAEAVGATYRGKKSGSL-GDCATFSFFGN 205 (391)
T ss_dssp CSBCGGGSGGGCCTTEEEECCB--CGGGCCCCHHHHHHHHHHTTCEEEEE-CTTCTTCEETTEETTSS-SSEEEEECBTT
T ss_pred cCcCHHHHHHhcCCCceEEEEE--CCCCChhhHHHHHHHHHHcCCEEEEE-CcccccceECCeeeccc-CCEEEEECCCC
Confidence 34555 67889988864 47899999999999999999999995 3445543321 2333 3676666 5
Q ss_pred ccccccCCCCCCceEEEEEch-hhHhcCCCce-eeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHH
Q 001990 357 QRFGVPMGYGGPHAAFLATSQ-EYKRMMPGRI-VGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY 434 (985)
Q Consensus 357 k~lg~P~~~GGP~~G~l~~~~-~~~~~lp~~~-vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y 434 (985)
|.|++ +..|++.+++ ++.+.+.... .|.+.+ .. |.. ...| .|. .+.++.+++
T Consensus 206 K~l~~------g~gg~~~~~~~~~~~~~~~~~~~g~~~~---~~-~~~----------~~~g-~~~----~~~~l~aa~- 259 (391)
T 3dr4_A 206 AIITT------GEGGMITTNDDDLAAKMRLLRGQGMDPN---RR-YWF----------PIVG-FNY----RMTNIQAAI- 259 (391)
T ss_dssp SSSCC------BSCEEEEESCHHHHHHHHHHHBTTCCTT---ST-TCC----------SSCC-CBC----BCCHHHHHH-
T ss_pred CcCCc------CCeEEEEECCHHHHHHHHHHHhcCCCCC---Cc-ccc----------cccc-ccc----CCCHHHHHH-
Confidence 66642 2346776654 4544432111 111000 00 100 0011 111 111223333
Q ss_pred HHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCC-------CCcceEEEecC---C--HHHHHHHHHHcCceeeee
Q 001990 435 AVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-------PFFDTVKVKCA---D--AHAIASAAYKIEMNLRVV 502 (985)
Q Consensus 435 ~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-------~~~~~~~i~~~---~--~~~l~~~L~~~Gi~~~~~ 502 (985)
.+...++++++.++..++++++++.|+++| +++... ..+..+.+..+ + ..++.+.|.++||.++..
T Consensus 260 -~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~~ 337 (391)
T 3dr4_A 260 -GLAQLERVDEHLAARERVVGWYEQKLARLG-NRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPV 337 (391)
T ss_dssp -HHHHHHTHHHHHHHHHHHHHHHHHHHGGGT-TSEECCCCCTTSCCCCSSEEEEECSSCSSCHHHHHHHHHHTTCCCEEC
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-ccccCcCCCCCCcceeEEEEEEECCccchhHHHHHHHHHHCCCceeec
Confidence 222235788899999999999999999885 766532 12223455443 2 789999999999977532
Q ss_pred c------------------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 503 D------------------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ~------------------------~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
. ...+|++++..+|++||++++++|..
T Consensus 338 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~ 388 (391)
T 3dr4_A 338 FHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQ 388 (391)
T ss_dssp CCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHT
T ss_pred CCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 1 25699999999999999999999975
No 281
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.69 E-value=4.4e-16 Score=178.98 Aligned_cols=299 Identities=9% Similarity=0.016 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHHHHhCCCc-cc-ee-cChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCc-HHHHHhc--CcE
Q 001990 630 YQEMFNNLGEWLCTITGFDS-FS-LQ-PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTN-PATAAMC--GMK 703 (985)
Q Consensus 630 ~~~~~~el~~~la~l~G~~~-~~-~~-~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~-~~~~~~~--G~~ 703 (985)
..+...++++++++++|.+. .. ++ +++|++++..++.++. .++ .+++....|+.. ...+... |.+
T Consensus 76 ~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~--------~~g-v~~v~~~~~~~~~~~~~~~~~~g~~ 146 (398)
T 2fyf_A 76 VKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLI--------DKR-SLHLTYGEFSAKFASAVSKNPFVGE 146 (398)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTC--------SSC-EEEEECSHHHHHHHHHHHHCTTSCC
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhc--------CCC-eEEEeCCHHHHHHHHHHHHhCCCCc
Confidence 34567889999999999974 23 44 6777776644433321 233 233444333211 1124445 888
Q ss_pred EEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcC
Q 001990 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYI 782 (985)
Q Consensus 704 v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~ 782 (985)
++.++.+ ++..+..+ ++ +++++|++++| |++|.+. |+++|+++ +|+++++|++|..+...+ ...
T Consensus 147 ~~~v~~~-~g~~~~~~----i~---~~~~~v~~~~~~nptG~~~-~~~~i~~~---~~~~vivD~a~~~~~~~~---~~~ 211 (398)
T 2fyf_A 147 PIIITSD-PGSAPEPQ----TD---PSVDVIAWAHNETSTGVAV-AVRRPEGS---DDALVVIDATSGAGGLPV---DIA 211 (398)
T ss_dssp CEEEECC-TTCCCCCC----CC---TTCSEEEEESEETTTTEEC-CCCCCTTC---C-CEEEEECTTTTTTSCC---CGG
T ss_pred eEEEecC-CCCCCCcc----cc---CCCCEEEEeCcCCCcceec-chHHhhhh---cCCeEEEEeccccCCccc---Ccc
Confidence 8899987 44332221 33 68899999987 5799998 88888887 899999999986443221 112
Q ss_pred CCcEEEeCCcccccccCCCCCCcceeeeecccccCcCC-----C----CccccCCCC--CCCCCCCCCCCcccccchhhh
Q 001990 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP-----S----HPVVSTGGI--PAPEKSQPLGTIAAAPWGSAL 851 (985)
Q Consensus 783 g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lp-----g----~~~g~~~~~--~~~~~~~~t~~i~s~~~g~~~ 851 (985)
++|++++++||+|+.+ +|+|++++++++++.+. + ......... .......++.+ ..
T Consensus 212 ~~di~~~s~sK~~~~~-----gg~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~--------~~ 278 (398)
T 2fyf_A 212 ETDAYYFAPQKNFASD-----GGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPA--------IA 278 (398)
T ss_dssp GCSEEEECTTSTTCSC-----SSEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCC--------HH
T ss_pred cCcEEEEecCcccCCC-----CceEEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCC--------HH
Confidence 4899999999998532 26899999987655431 0 011000000 00000111111 11
Q ss_pred HHHHHHHHHHHhchhh-HHHHHHHHHHHHHHHHHHHhccCCeeEcC--CCCceeEEEEEEecCccccCCCCHHHHHHHHH
Q 001990 852 ILPISYTYIAMMGSKG-LTEASKIAILNANYMAKRLEKHYPILFRG--VNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM 928 (985)
Q Consensus 852 ~~~~A~a~l~~lg~~g-l~~~~~~~~~~a~~l~~~L~~~~~i~~~g--~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~ 928 (985)
...++.+++..+.++| +.+..++..++++++.+.|++...+.... +.......+.+.++ .+.+..++.+.|.
T Consensus 279 ~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~L~ 353 (398)
T 2fyf_A 279 TLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFV-----DDVDAGTVAKILR 353 (398)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEEC-----TTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECC-----CCCCHHHHHHHHH
Confidence 1222334455555555 77778888889999999998732332221 11111113445553 2567889999999
Q ss_pred HCCCccCCCCCCC-CCEEEEeccCCCCHHhhchHHHHHHHHHHHHH
Q 001990 929 DYGFHGPTMSWPV-PGTLMIEPTESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 929 e~Gi~~~~~~~pv-~~~lris~t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
++||.+....... .+.+|++++..+|++|++ +++++|+++++
T Consensus 354 ~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~---~~~~~l~~~l~ 396 (398)
T 2fyf_A 354 ANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVS---ALTECVDWVVE 396 (398)
T ss_dssp HTTCBCCSCCTTTCSSEEEEECCTTSCHHHHH---HHHHHHHHHHH
T ss_pred HCCcEEecCcccCCCCEEEEEecCCCCHHHHH---HHHHHHHHHHH
Confidence 9999975321112 378999999999999999 99999998765
No 282
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.69 E-value=1.5e-15 Score=176.03 Aligned_cols=145 Identities=14% Similarity=0.155 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHH----HhcCcEEEEE-
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATA----AMCGMKIVSV- 707 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~----~~~G~~v~~v- 707 (985)
...++++.+++++|.+.. +++++|++++..++.++. .++++||++...|+.+...+ +..|++++.+
T Consensus 59 ~~~~l~~~la~~~g~~~~-v~~~sGt~A~~~~l~~~~--------~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 129 (421)
T 2ctz_A 59 TVDVLEKRLAALEGGKAA-LATASGHAAQFLALTTLA--------QAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTS 129 (421)
T ss_dssp HHHHHHHHHHHHHTCSEE-EEESSHHHHHHHHHHHHC--------CTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECC
T ss_pred HHHHHHHHHHHHhCCCce-EEecCHHHHHHHHHHHHh--------CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEEC
Confidence 466899999999998754 667778776644444321 46789999988776554433 6789999998
Q ss_pred eCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccc-cccccCCCCCCcCCCc
Q 001990 708 GTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGAN-MNAQVGLTSPGYIGAD 785 (985)
Q Consensus 708 ~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~-~~~~~g~~~~g~~g~D 785 (985)
+.+ |+++++++|+ +++++|++++| |++|.+. |+++|+++|+++|+++++|++| ..+.. ..+..+++|
T Consensus 130 ~~~-----d~~~l~~~i~---~~~~~v~~~~~~n~~G~~~-~l~~i~~~a~~~g~~livD~~~~~~g~~--~~~~~~~~D 198 (421)
T 2ctz_A 130 REE-----RPEEFLALTD---EKTRAWWVESIGNPALNIP-DLEALAQAAREKGVALIVDNTFGMGGYL--LRPLAWGAA 198 (421)
T ss_dssp TTC-----CHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHTCEEEEECGGGGGGTS--CCGGGGTCS
T ss_pred CCC-----CHHHHHHhhc---cCCeEEEEECCCCCCCccc-CHHHHHHHHHHcCCEEEEECCccccccc--CCccccCCe
Confidence 764 8999999997 78999999998 5789998 8999999999999999999998 65432 234457899
Q ss_pred EEEeCCcccccc
Q 001990 786 VCHLNLHKTFCI 797 (985)
Q Consensus 786 i~~~s~hKtl~~ 797 (985)
++++|+||+|+.
T Consensus 199 i~~~s~~K~l~~ 210 (421)
T 2ctz_A 199 LVTHSLTKWVGG 210 (421)
T ss_dssp EEEEETTTTTTC
T ss_pred EEEECCcccccC
Confidence 999999999953
No 283
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.69 E-value=4.9e-16 Score=180.55 Aligned_cols=287 Identities=16% Similarity=0.188 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCCCcHHHHHhcCc---------
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCGM--------- 702 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv-~~~~Hg~~~~~~~~~G~--------- 702 (985)
...+++++++++++-....++.++|++++++++.+++.+ .++++||+ ...+|+.....+...|.
T Consensus 94 ~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~------~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~ 167 (429)
T 3k28_A 94 IENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGY------TGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPD 167 (429)
T ss_dssp HHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHH------HTCCEEEEEETCCCCSCGGGCSSCCTTC-----CC
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHh------hCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCC
Confidence 355788899999852233477889999887777776654 24566776 55678765444322221
Q ss_pred ----------EEEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcCC-CccccccC----HHHHHHHHHHcCCEEEEEc
Q 001990 703 ----------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG----IDEICKIIHDNGGQVYMDG 767 (985)
Q Consensus 703 ----------~v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~pn-~~G~i~~d----i~eI~~la~~~g~lliVD~ 767 (985)
+++.+|.+ |+++|+++++++++++++|+++.++ +.|.+. + +++|+++|++||++||+|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~-~~~~~l~~l~~l~~~~~~~li~DE 241 (429)
T 3k28_A 168 SPGVPEGVAKNTITVAYN-----DLESVKYAFEQFGDDIACVIVEPVAGNMGVVP-PQPGFLEGLREVTEQNGALLIFDE 241 (429)
T ss_dssp CTTCCHHHHTTEEEEETT-----CHHHHHHHHHHHGGGEEEEEECSSBCTTSCBC-CCTTHHHHHHHHHHHHTCEEEEEC
T ss_pred cCCCCCcccCceeecCCC-----CHHHHHHHHHhCCCCEEEEEEcCCCCCCCccc-CCHHHHHHHHHHHHHcCCEEEEec
Confidence 23334432 8999999998654567777765443 567776 5 9999999999999999999
Q ss_pred cccccccCCCCCCc--------CCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCC
Q 001990 768 ANMNAQVGLTSPGY--------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPL 839 (985)
Q Consensus 768 a~~~~~~g~~~~g~--------~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t 839 (985)
+|. ++ ..+. ..+|++++ .|+|+ +|.++|++++++++++.+...... ...+|
T Consensus 242 v~~----g~-~~g~~~~~~~~~~~~di~t~--sK~~~-----~G~~iG~~~~~~~~~~~~~~~~~~---------~~~~t 300 (429)
T 3k28_A 242 VMT----GF-RVAYNCGQGYYGVTPDLTCL--GKVIG-----GGLPVGAYGGKAEIMRQVAPSGPI---------YQAGT 300 (429)
T ss_dssp TTT----TT-TSSTTHHHHHHTCCCSEEEE--CGGGG-----TTSCCEEEEECHHHHTTBTTTSSB---------CCCCT
T ss_pred ccc----cc-ccCcchHHHHhCCCCceehh--hhhhc-----CCCCeEEEEEcHHHHhhhccCCCc---------cccCC
Confidence 983 22 2221 23688765 48884 357889999998887665321000 00011
Q ss_pred CCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc---CCe--eEcCCCCceeEEEEEEecCcc-
Q 001990 840 GTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPI--LFRGVNGTVAHEFIVDLRGLK- 913 (985)
Q Consensus 840 ~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~---~~i--~~~g~~~~~~~~~vv~~~~~~- 913 (985)
.+ +++..++++.+.+..+. .+..++..++.+++++.|++. +.. ...+. +. .+.+.+....
T Consensus 301 --~~----~~~~a~aaa~aal~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-g~---~~~~~~~~~~~ 366 (429)
T 3k28_A 301 --LS----GNPLAMAAGYETLVQLT----PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRA-GS---MIGIFFTDEPV 366 (429)
T ss_dssp --TT----TCHHHHHHHHHHHHTCC----HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEE-TT---EEEEESSSSCC
T ss_pred --CC----CChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEee-cc---EEEEEEecCCc
Confidence 11 13344444555555443 345566777788888888752 221 11111 11 1223332100
Q ss_pred -------ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 914 -------NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 914 -------~~~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
...+....++.+.|.++||.+.... .+.+|++ ..+|++|++ +++++|++++++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---~~~~r~~--~~~t~e~i~---~~l~~l~~~l~~ 426 (429)
T 3k28_A 367 INYDAAKSSNLQFFAAYYREMVEQGVFLPPSQ---FEGLFLS--TVHSDADIE---ATIAAAEIAMSK 426 (429)
T ss_dssp CSHHHHTTSCHHHHHHHHHHHHHTTEECCSST---TSCBCCC--TTCCHHHHH---HHHHHHHHHHHT
T ss_pred ccccccccccHHHHHHHHHHHHHCCeEEecCC---CCCEEEE--CCCCHHHHH---HHHHHHHHHHHH
Confidence 0001123678889999999976432 2456764 578999999 999999988764
No 284
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.69 E-value=3.1e-15 Score=168.89 Aligned_cols=320 Identities=10% Similarity=0.039 Sum_probs=203.2
Q ss_pred cCCCCCCCCCcHHHHHHHHhCCcccc--ccCCChh-hHhhHHHHHHHHHHHHHHHhhCCC-Ccceeeccch-HHHHHHHH
Q 001990 171 IGMGYYNTHVPPVILRNIMENPAWYT--QYTPYQA-EIAQGRLESLLNFQTMIADLTGLP-MSNASLLDEG-TAAAEAMA 245 (985)
Q Consensus 171 lG~g~~~~~~p~~v~~~i~~~~~~~t--~~~py~~-e~sqg~l~~i~e~q~~ia~L~g~~-~~~~sl~~~~-ta~~ea~~ 245 (985)
+..|.+ ..|+.+.+++.+.-.-+. ..+.|.. ..+.+..+...++++.+++++|.+ +.++.+++|+ |.++++++
T Consensus 7 ~~~g~~--~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~ 84 (360)
T 1w23_A 7 FNAGPS--ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLP 84 (360)
T ss_dssp CCSSSC--CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHH
T ss_pred ecCCCc--CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHH
Confidence 345543 577777666655321110 1122211 014566677888999999999997 3577788888 88888877
Q ss_pred HHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---------hhhhc--cCCCEeEEEEEcC-CCCeeec
Q 001990 246 MCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---------KDIDY--KSGDVCGVLVQYP-GTEGEVL 313 (985)
Q Consensus 246 ~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~---------~~l~~--l~~~t~~V~v~~p-n~~G~i~ 313 (985)
+++....++++.|+++...|++... ++..| +++.++. +++++ ++++|++|++.+| |++|.+.
T Consensus 85 ~~l~~~~~~g~~vi~~~~~~~~~~~-----~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG~~~ 158 (360)
T 1w23_A 85 MNLLTKGTIGNYVLTGSWSEKALKE-----AKLLG-ETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYGTQY 158 (360)
T ss_dssp HHHCCTTCEEEEEECSHHHHHHHHH-----HHTTS-EEEEEEECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTEEC
T ss_pred HHhcCCCCcccEEEecchhHHHHHH-----HHHhC-CeEEeecccccCcCCccchHhhccCCCCCEEEEeCCCCCcceec
Confidence 6653211246678877777766322 23468 7777654 34443 5678999999987 7899997
Q ss_pred cHHHHHHHHHhCCcEEEEEeccccccCCC-CCCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeee
Q 001990 314 DYGDFIKNAHANGVKVVMATDLLALTILK-PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVS 391 (985)
Q Consensus 314 dl~~I~~~a~~~galliV~a~~~alg~l~-~p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s 391 (985)
| +|.+ ++|+++++| +..+.+... +..++ |+++++. |.|+ | +|+|++++++++++++.... ++
T Consensus 159 ~--~i~~---~~~~~li~D-~a~~~~~~~~~~~~~--di~~~s~sK~~~-~-----~G~G~~~~~~~~~~~~~~~~-~~- 222 (360)
T 1w23_A 159 Q--NFPE---INHAPLIAD-MSSDILSRPLKVNQF--GMIYAGAQKNLG-P-----SGVTVVIVKKDLLNTKVEQV-PT- 222 (360)
T ss_dssp S--SCCC---CCSSCEEEE-CTTTTTSSCCCGGGC--SEEEEETTTTTS-C-----TTCEEEEEEHHHHCSCCTTC-CG-
T ss_pred c--cccc---cCCceEEEe-chhhcCCCCcCcccC--CEEEEEcccccC-C-----CCcEEEEEcHHHHhhcccCC-cc-
Confidence 6 3333 799999995 344554332 11233 8999998 7664 3 34799999999887764321 11
Q ss_pred ecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHHHHHHHhcCCCE-EE
Q 001990 392 IDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE-GLKTIAQRVHGLAGTFALGLKKLGTV-EV 469 (985)
Q Consensus 392 ~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~-Gl~~i~~~~~~~a~~l~~~L~~~g~~-~~ 469 (985)
.+......+ .+...+|+|+ ....++.+++ .++..+ |++++.++..++++++.+.|++++++ .+
T Consensus 223 ---------~~~~~~~~~-~~~~~~~~~~---~~~~~~~~al--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 287 (360)
T 1w23_A 223 ---------MLQYATHIK-SDSLYNTPPT---FSIYMLRNVL--DWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVG 287 (360)
T ss_dssp ---------GGCHHHHHH-TTTCSSCCCH---HHHHHHHHHH--HHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEE
T ss_pred ---------hhhhhhhhh-ccCCCCCCCH---HHHHHHHHHH--HHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 111000000 0112234443 2333444444 344344 78999999999999999999988645 54
Q ss_pred cC-C-CCcc-eEEEecCC---HHHHHHHHHHcCceeeee--cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 470 QG-L-PFFD-TVKVKCAD---AHAIASAAYKIEMNLRVV--DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 470 ~~-~-~~~~-~~~i~~~~---~~~l~~~L~~~Gi~~~~~--~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.. + .... .+.+..++ ..++.+.|.++||.+... .++.+|++++.+++++|+++++++|+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~ 355 (360)
T 1w23_A 288 HAEKGSRSLMNVTFNLRNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQ 355 (360)
T ss_dssp SSCGGGBCSSEEEEECSSHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCchhccCcEEEEEcCCCccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 31 1 1222 45666664 567888899999987543 247899999999999999999999963
No 285
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.69 E-value=7.4e-15 Score=169.34 Aligned_cols=319 Identities=10% Similarity=0.090 Sum_probs=202.3
Q ss_pred HHHHHHHHHcCCCccceecCCCCCCCCCcHHHHHHHHhCCc-cccccCCChhhHhhHHHHHHHHHHHHHHHhh----C--
Q 001990 153 MIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPA-WYTQYTPYQAEIAQGRLESLLNFQTMIADLT----G-- 225 (985)
Q Consensus 153 ~~~~~~~~~~~n~~~~~~lG~g~~~~~~p~~v~~~i~~~~~-~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~----g-- 225 (985)
+.+.++++...+..+.+ ++.|.++...|+.+.+++ +.-. ....|++. +|. .++++.+|+++ |
T Consensus 31 ~~~~~~~~~~~g~~~i~-l~~~~~~~~~~~~v~~a~-~~l~~~~~~y~~~-----~g~----~~l~~~la~~~~~~~g~~ 99 (409)
T 2gb3_A 31 LVPFAEMAKKRGVRIHH-LNIGQPDLKTPEVFFERI-YENKPEVVYYSHS-----AGI----WELREAFASYYKRRQRVD 99 (409)
T ss_dssp GHHHHHHHHHTTCEEEE-CSSCCCCSCCCTHHHHHH-HHTCCSSCCCCCT-----TCC----HHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHhcCCCEEe-ccCCCCCCCCCHHHHHHH-HHHhcCCCCCCCC-----CCc----HHHHHHHHHHHHHHhCCC
Confidence 44445555444444333 344444434455554454 3211 12234332 121 23455566655 3
Q ss_pred CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---------hhhhc-cC
Q 001990 226 LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---------KDIDY-KS 295 (985)
Q Consensus 226 ~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~---------~~l~~-l~ 295 (985)
.++.++.+++|+|.+++.++.++ .. +||+|++++..|+++...++. .|.+++.++. ++|++ ++
T Consensus 100 ~~~~~v~~~~g~t~a~~~~~~~~-~~--~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~v~~~~~~~~~~~~~l~~~l~ 172 (409)
T 2gb3_A 100 VKPENVLVTNGGSEAILFSFAVI-AN--PGDEILVLEPFYANYNAFAKI----AGVKLIPVTRRMEEGFAIPQNLESFIN 172 (409)
T ss_dssp CCGGGEEEESHHHHHHHHHHHHH-CC--TTCEEEEEESCCTHHHHHHHH----HTCEEEEEECCGGGTSCCCTTGGGGCC
T ss_pred CCHHHEEEeCCHHHHHHHHHHHh-CC--CCCEEEEcCCCchhHHHHHHH----cCCEEEEeccCCCCCCccHHHHHHhhC
Confidence 44567889999999988887665 22 789999999999998887653 4677776643 44555 67
Q ss_pred CCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEeccccccCCC----C--CCcccceEEEecC-ccccccCC
Q 001990 296 GDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK----P--PGELGADIVVGSA-QRFGVPMG 364 (985)
Q Consensus 296 ~~t~~V~v~~p-n~~G~i~---dl~~I~~~a~~~galliV~a~~~alg~l~----~--p~~~GaDi~v~s~-k~lg~P~~ 364 (985)
+++++|++++| |++|.+. ++++|+++|+++|+++++|. ..+.+... + ++..+.|++++|. |.|+.|
T Consensus 173 ~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-a~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~-- 249 (409)
T 2gb3_A 173 ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDE-VYSEIVFRGEFASALSIESDKVVVIDSVSKKFSAC-- 249 (409)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC-TTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCG--
T ss_pred cCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEC-cccccccCCCCCCccccCCCCEEEEecchhccCCc--
Confidence 78999999988 5799884 69999999999999999952 33332211 1 1113689999997 877532
Q ss_pred CCCCceEEEEEch-hhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhH-HHHHHHHHHHHHcCcch
Q 001990 365 YGGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQA-LLANMAAMYAVYHGPEG 442 (985)
Q Consensus 365 ~GGP~~G~l~~~~-~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~-l~a~~aa~y~~~~g~~G 442 (985)
|-.+|++++++ ++.+.+... +...+ +.+.. ..++.++ +. .+.++
T Consensus 250 --G~r~G~~~~~~~~l~~~l~~~--------------------------~~~~~---~~~~~~~~a~~~~--l~-~~~~~ 295 (409)
T 2gb3_A 250 --GARVGCLITRNEELISHAMKL--------------------------AQGRL---APPLLEQIGSVGL--LN-LDDSF 295 (409)
T ss_dssp --GGCCEEEECSCHHHHHHHHHH--------------------------HHHSC---CCCHHHHHHHHHH--HT-CCHHH
T ss_pred --cceEEEEEECcHHHHHHHHHH--------------------------HhccC---CCCHHHHHHHHHH--Hh-ccHHH
Confidence 12368999988 776654100 00011 11111 1122121 11 25667
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEE-cCCCCcceEEEecCC--HHHHHHHHHHc------Cceeeee---------cC
Q 001990 443 LKTIAQRVHGLAGTFALGLKKLGTVEV-QGLPFFDTVKVKCAD--AHAIASAAYKI------EMNLRVV---------DS 504 (985)
Q Consensus 443 l~~i~~~~~~~a~~l~~~L~~~g~~~~-~~~~~~~~~~i~~~~--~~~l~~~L~~~------Gi~~~~~---------~~ 504 (985)
++++.++..++.+++.+.|+++| +++ ..+....-+.+..++ ..++.++|.++ ||.+... .+
T Consensus 296 ~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~ 374 (409)
T 2gb3_A 296 FDFVRETYRERVETVLKKLEEHG-LKRFTKPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGK 374 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-CCCBCCCSBSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-ceeeeCCCeeEEEEEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCC
Confidence 88889999999999999999886 877 432111112334442 78899999887 9987542 14
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 505 NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 505 ~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+.+|++++ +++++++++++.|..
T Consensus 375 ~~iRis~~--~~~e~i~~~~~~l~~ 397 (409)
T 2gb3_A 375 KEIRIACV--LEKDLLSRAIDVLME 397 (409)
T ss_dssp SEEEEECC--SCHHHHHHHHHHHHH
T ss_pred CEEEEEeC--CCHHHHHHHHHHHHH
Confidence 78999998 899999999999974
No 286
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.69 E-value=6e-16 Score=184.84 Aligned_cols=327 Identities=12% Similarity=0.043 Sum_probs=187.2
Q ss_pred hcHHHHHHHHHHHHHHHhCC--Cc---cc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcC
Q 001990 628 QGYQEMFNNLGEWLCTITGF--DS---FS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCG 701 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~--~~---~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G 701 (985)
.|..++.+.+.+++.+.++. +. .. +++++|++++..++.++.. ..-..++++|+++.+.|..+...+...|
T Consensus 138 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~---~~l~~~gd~Viv~~p~~~~~~~~~~~~g 214 (533)
T 3f6t_A 138 RCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAE---NHLLKKGDKIAINEPIFTPYLRIPELKD 214 (533)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHH---TTSSCTTCEEEEESSCCHHHHTSGGGGG
T ss_pred ccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhh---hhccCCcCEEEEcCCCcHHHHHHHHHcC
Confidence 46666666666666555232 21 23 4445555554333332110 0012467899999987765555566789
Q ss_pred cEEEEEeCC----CCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccc--cCHHHHHHHHH-HcCCEEEEEccccccc
Q 001990 702 MKIVSVGTD----AKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIH-DNGGQVYMDGANMNAQ 773 (985)
Q Consensus 702 ~~v~~v~~~----~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~--~di~eI~~la~-~~g~lliVD~a~~~~~ 773 (985)
.+++.++++ .++.+|+++|+++++ +++++|++++| |++|.+. .++++|+++|+ ++|+++++|++|....
T Consensus 215 ~~~~~v~~~~~~~~~~~~d~~~l~~~l~---~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~ 291 (533)
T 3f6t_A 215 YELVEVDLHSYEKNDWEIEPNEIEKLKD---PSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFV 291 (533)
T ss_dssp SEEEEECCCEETTTTSEECHHHHHHHSC---TTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGS
T ss_pred CeEEEEEecCCcccCCCCCHHHHHHHhC---CCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccc
Confidence 999999985 347899999999987 78999999999 5799986 13558889998 5899999999985221
Q ss_pred cCCCCCC--cCCCcEEEeCCcccccccCCCCCCcceeeeeccc-----ccCcCCCCc-------cc-cCCCC--C-----
Q 001990 774 VGLTSPG--YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-----LAPFLPSHP-------VV-STGGI--P----- 831 (985)
Q Consensus 774 ~g~~~~g--~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~-----l~~~lpg~~-------~g-~~~~~--~----- 831 (985)
.+..... ..+.++++.|++|+|+. .|.++|+++++++ ++..++... ++ .+.+. .
T Consensus 292 ~~~~~~~~~~~~~~i~~~S~SK~~g~----~G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~r 367 (533)
T 3f6t_A 292 PNFKSIYSVVPYNTMLVYSYSKLFGC----TGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDR 367 (533)
T ss_dssp TTCCCHHHHSGGGEEEEEESHHHHTC----GGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHH
T ss_pred cCccCHhhcCCCCEEEEecCcccCCC----cccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHH
Confidence 1111111 11345889999999853 3567999999876 544442100 00 00000 0
Q ss_pred -----CCCCCCCCCCcccccchhhhHHHHHHHHHHHh--------chhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCC
Q 001990 832 -----APEKSQPLGTIAAAPWGSALILPISYTYIAMM--------GSKGLTEASKIAILNANYMAKRLEKHYPILFRGVN 898 (985)
Q Consensus 832 -----~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~l--------g~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~ 898 (985)
+..+...+.+.+ .....+.+...+..+ ..+.+.+..+...++.++|.+.|. +.+....++
T Consensus 368 l~~~~~~~~~~~~~~~~-----~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~--~~~~~~~~~ 440 (533)
T 3f6t_A 368 LCADSRSIGLYHTAGLS-----TPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ--APKDETDTN 440 (533)
T ss_dssp HHHHHTTTTTGGGCSCC-----HHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT--CCCCCSTTB
T ss_pred HHHHHHHHHHhcccCCC-----hHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC--CCccccCCC
Confidence 000001111111 111111111122223 123345555666777888888886 332222222
Q ss_pred CceeEEEEEEecCcc-ccCC----------CCHHHHHHHHH-HCCCccCCCC-CC-CCCEEEEeccCCCCHHhhchHHHH
Q 001990 899 GTVAHEFIVDLRGLK-NTAG----------IEPEDVAKRLM-DYGFHGPTMS-WP-VPGTLMIEPTESESKVCHNREDLF 964 (985)
Q Consensus 899 ~~~~~~~vv~~~~~~-~~~g----------~~~~~l~~~L~-e~Gi~~~~~~-~p-v~~~lris~t~~~t~eeId~~~~~ 964 (985)
+..+ +.+++..+. ...+ .+..++..+|. ++||.+...+ +. -.+.+|++++. .+++|++ ++
T Consensus 441 ~g~~--~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a~-~~~e~i~---~~ 514 (533)
T 3f6t_A 441 THYY--SLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQAN-LPTEDYA---LI 514 (533)
T ss_dssp CCSE--EEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSSTTEEEEESSS-SCHHHHH---HH
T ss_pred ceEE--EEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEee-CCHHHHH---HH
Confidence 2222 334443100 0001 24556666654 7799875422 11 15799999854 5789999 99
Q ss_pred HHHHHHHHHHHHH
Q 001990 965 FQILLSLTKFTTF 977 (985)
Q Consensus 965 i~aL~~i~~~~~~ 977 (985)
++.|+++++++.+
T Consensus 515 i~~L~~~l~~~~~ 527 (533)
T 3f6t_A 515 GKQVLELLKEYYE 527 (533)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
No 287
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.69 E-value=1.4e-15 Score=176.60 Aligned_cols=290 Identities=12% Similarity=0.128 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCCCcHHHHHhcC----------
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMCG---------- 701 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv-~~~~Hg~~~~~~~~~G---------- 701 (985)
...+++++++++++-....++.++|+++++.++.+++.+ .++++||+ ...+||.....+...|
T Consensus 94 ~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~------~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 167 (429)
T 4e77_A 94 MEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGY------TGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPN 167 (429)
T ss_dssp HHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHH------HCCCEEEEETTCCCC------------------CC
T ss_pred HHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHh------hCCCEEEEEcCccCCCChhhhhhcCCcccccCCCC
Confidence 456788899999863334577889999887777766654 23456665 5567776543221111
Q ss_pred ---c------EEEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcCC-CccccccC----HHHHHHHHHHcCCEEEEEc
Q 001990 702 ---M------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS-THGVYEEG----IDEICKIIHDNGGQVYMDG 767 (985)
Q Consensus 702 ---~------~v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~pn-~~G~i~~d----i~eI~~la~~~g~lliVD~ 767 (985)
+ .+..++. .|+++|+++++++++++++|+++..+ +.|++. + +++|+++|++||++||+|+
T Consensus 168 ~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~-~~~~~l~~l~~l~~~~~~lli~DE 241 (429)
T 4e77_A 168 SPGVPTDFAKHTLTCTY-----NDLASVRQAFEQYPQEVACIIVEPVAGNMNCIP-PLPEFLPGLRALCDEFGALLIIDE 241 (429)
T ss_dssp CTTSCGGGGTTEEEECT-----TCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBC-CCTTHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCCccCCceeecCC-----CCHHHHHHHHHhcCCCEEEEEECCccCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEec
Confidence 1 2233333 28999999998765677777654333 467776 5 9999999999999999999
Q ss_pred cccccccCCCCC---C--cCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCc
Q 001990 768 ANMNAQVGLTSP---G--YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTI 842 (985)
Q Consensus 768 a~~~~~~g~~~~---g--~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i 842 (985)
+|. ++ ..... . ...+|++++ .|+|+ +|.++|++++++++++.+...... ...+|
T Consensus 242 v~~-g~-r~g~~~~~~~~~~~pdi~t~--sK~~~-----~G~~~G~~~~~~~~~~~l~~~~~~---------~~~~t--- 300 (429)
T 4e77_A 242 VMT-GF-RVALAGAQDYYHVIPDLTCL--GKIIG-----GGMPVGAFGGRREVMNALAPTGPV---------YQAGT--- 300 (429)
T ss_dssp TTT-BT-TTBTTCHHHHTTCCCSEEEE--EGGGG-----TTSCCEEEEECHHHHTTBTTTSSB---------CC--C---
T ss_pred ccc-Cc-ccCcchHHHhcCCCCCeeee--ccccc-----CCCCeEEEEECHHHHHHhccCCCc---------cccCC---
Confidence 985 22 11111 1 123588755 48884 457789999998877665321000 00011
Q ss_pred ccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc---CCe--eEcCCCCceeEEEEEEecCccc---
Q 001990 843 AAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPI--LFRGVNGTVAHEFIVDLRGLKN--- 914 (985)
Q Consensus 843 ~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~---~~i--~~~g~~~~~~~~~vv~~~~~~~--- 914 (985)
+.+++..++++.+.+..+..+.+ .++..++.+++++.|++. +.+ ...+. +. .+.+.+.....
T Consensus 301 ---~~~~~~~~aaa~aal~~~~~~~~---~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-g~---~~~~~~~~~~~~~~ 370 (429)
T 4e77_A 301 ---LSGNPIAMAAGFACLTEISQVGV---YETLTELTDSLATGLRHAAKEENIPLVVNHV-GG---MFGLFFTNADTVTC 370 (429)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTSTTH---HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEE-TT---EEEEECCSSSCCCS
T ss_pred ---CCCCHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHhCCCceEEEEe-ee---EEEEEEccCccccc
Confidence 11233445555666766644443 345556667777777641 222 11111 11 13344331000
Q ss_pred ------cCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHH
Q 001990 915 ------TAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 915 ------~~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
.......++.+.|.++||.+..... +.++ ++..+|++|++ +++++|+++++
T Consensus 371 ~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~---~~~~--~~~~~t~e~i~---~~l~~l~~~l~ 427 (429)
T 4e77_A 371 YQDVMNCDVERFKRFFHLMLEEGVYLAPSAF---EAGF--MSLAHSNEDIQ---KTVNAARRCFA 427 (429)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHTTEECCSSTT---SCEE--CCTTCCHHHHH---HHHHHHHHHHT
T ss_pred ccccccccHHHHHHHHHHHHHCCeEEeecCC---CCEE--EeccCCHHHHH---HHHHHHHHHHH
Confidence 0001236789999999999864432 3344 46778999999 99999998764
No 288
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.68 E-value=6.8e-15 Score=167.96 Aligned_cols=274 Identities=14% Similarity=0.042 Sum_probs=188.0
Q ss_pred HHHHHHHHHHhhC--CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--
Q 001990 213 LLNFQTMIADLTG--LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~-- 288 (985)
..++.+.+++.+| .++.++.+++|+|.++++++.++ .. +||+|+++...|+++...++. .|.+++.++.
T Consensus 68 ~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l-~~--~gd~vl~~~~~~~~~~~~~~~----~g~~~~~~~~~~ 140 (391)
T 3dzz_A 68 YKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQF-TS--PGDQILVQEPVYNMFYSVIEG----NGRRVISSDLIY 140 (391)
T ss_dssp HHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHH-SC--TTCEEEECSSCCHHHHHHHHH----TTCEEEECCCEE
T ss_pred HHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHh-CC--CCCeEEECCCCcHHHHHHHHH----cCCEEEEeeeee
Confidence 3445567888888 56678888999999888877665 23 789999999999998887753 5777777654
Q ss_pred ---------hhhhc-cC-CCEeEEEEEcC-CCCeee---ccHHHHHHHHHhCCcEEEEEeccccccCC-----CCCCccc
Q 001990 289 ---------KDIDY-KS-GDVCGVLVQYP-GTEGEV---LDYGDFIKNAHANGVKVVMATDLLALTIL-----KPPGELG 348 (985)
Q Consensus 289 ---------~~l~~-l~-~~t~~V~v~~p-n~~G~i---~dl~~I~~~a~~~galliV~a~~~alg~l-----~~p~~~G 348 (985)
+++++ +. +++++|++.+| |++|.+ +++++|+++|+++|+++++|. ..+.... .+...++
T Consensus 141 ~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~g~~~~~~~~~~ 219 (391)
T 3dzz_A 141 ENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDE-IHGDLVLTDEDITPAFTVD 219 (391)
T ss_dssp ETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEEC-TTTTCBCSSCCCCCGGGSC
T ss_pred cCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEec-ccccccCCCCCceehhhcC
Confidence 34555 65 78999999998 789999 789999999999999999953 3332111 1112333
Q ss_pred ---ce--EEEecC-ccccccCCCCCCceEEEEEc-hhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCcc
Q 001990 349 ---AD--IVVGSA-QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNIC 421 (985)
Q Consensus 349 ---aD--i~v~s~-k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~ 421 (985)
.| ++++|. |.++.| |..+|+++++ +++.+.+.... ++ ....+.|.
T Consensus 220 ~~~~d~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~~~~~~~---------------------~~--~~~~~~~~- 271 (391)
T 3dzz_A 220 WDAKNWVVSLISPSKTFNLA----ALHAACAIIPNPDLRARAEESF---------------------FL--AGIGEPNL- 271 (391)
T ss_dssp TTTGGGEEEEECSHHHHTCT----TTCCEEEECCSHHHHHHHHHHH---------------------HH--HTCSSCCT-
T ss_pred ccccCcEEEEEeChhhcccc----chhheEEEECCHHHHHHHHHHH---------------------Hh--hccCCCCH-
Confidence 56 889998 888532 4467899887 77766541000 00 00011221
Q ss_pred chhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhc-CCCEEEcCCCCcceEEEecC--C--HHHHHHHHH-Hc
Q 001990 422 TAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQGLPFFDTVKVKCA--D--AHAIASAAY-KI 495 (985)
Q Consensus 422 t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~~~~~~~~~~i~~~--~--~~~l~~~L~-~~ 495 (985)
....+..+++ . .+.+.++++.++..++.+++.+.|++ ++++++......-.+.+.++ + ..++.++|. ++
T Consensus 272 --~~~~a~~~~l--~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 346 (391)
T 3dzz_A 272 --LAIPAAIAAY--E-EGHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYLAWVDISALGMNAEDFCKYLREKT 346 (391)
T ss_dssp --THHHHHHHHH--H-HCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCBSSEEEEECGGGCSCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHH--h-ccHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCceEEEEEehhhcCCCHHHHHHHHHHhC
Confidence 2222333332 2 24556888999999999999999998 64488764321111223433 2 788999996 88
Q ss_pred Cceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 496 EMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 496 Gi~~~~~------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
||.+... .++.+|++++ +++++++++++.|..
T Consensus 347 gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~ 384 (391)
T 3dzz_A 347 GLIISAGNGYRGNGHEFVRINLA--CPKELVIDGMQRLKQ 384 (391)
T ss_dssp CEECEESGGGCTTGGGEEEEECC--SCHHHHHHHHHHHHH
T ss_pred CEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHH
Confidence 9988642 1378999998 689999999999874
No 289
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.68 E-value=4.5e-15 Score=168.62 Aligned_cols=270 Identities=12% Similarity=0.097 Sum_probs=180.4
Q ss_pred HHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhh-hh--cCCC-CEEEEcCCCChhHHHHHHHhhcC----CCeE---
Q 001990 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQ--KGKK-KTFIIASNCHPQTIDICITRADG----FDIK--- 282 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~--~~~g-~~Vlv~~~~h~s~~~~~~~~a~~----~gi~--- 282 (985)
.++++.+|+++|++ .++.+++|+|.++++++.+.+ +. .++| |+|++++..|+.....+...... .|..
T Consensus 73 ~~l~~~la~~~g~~-~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 151 (375)
T 2eh6_A 73 EELAHKLVKHFWTE-GKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLV 151 (375)
T ss_dssp HHHHHHHHHTSSSC-EEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCC
T ss_pred HHHHHHHHhhcCCC-CeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCC
Confidence 46778999999984 678889999998888765432 11 0256 89999997755444333221110 1222
Q ss_pred --EEE---eCchhhhc-cCCCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecccc-ccCCCC---CCcc
Q 001990 283 --VVV---SDLKDIDY-KSGDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLA-LTILKP---PGEL 347 (985)
Q Consensus 283 --v~~---~~~~~l~~-l~~~t~~V~v~~p-n~~G~i~d----l~~I~~~a~~~galliV~a~~~a-lg~l~~---p~~~ 347 (985)
+.. .|+++|++ +++++++|++++| |.+|.+.| +++|.++|+++|+++++|. ..+ ++.... ...+
T Consensus 152 ~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~ 230 (375)
T 2eh6_A 152 PGFSYAKLNDIDSVYKLLDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDE-VQTGIGRTGEFYAYQHF 230 (375)
T ss_dssp SSEEEECTTCHHHHHTTCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEEC-TTTTTTTTSSSSGGGGG
T ss_pred CCceeCCCchHHHHHHHhcCCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEec-cccCCCCCCcchhhhhc
Confidence 444 35577777 7788999999876 67899988 9999999999999999953 333 432221 2356
Q ss_pred c--ceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhH
Q 001990 348 G--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQA 425 (985)
Q Consensus 348 G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~ 425 (985)
| +|+++.| |+|+. |.+.|++++++++++.+.....+ .| .+++..
T Consensus 231 ~~~~d~~s~S-K~~~~-----g~~~G~~~~~~~~~~~~~~~~~~--------------------------~~--~~~~~~ 276 (375)
T 2eh6_A 231 NLKPDVIALA-KGLGG-----GVPIGAILAREEVAQSFTPGSHG--------------------------ST--FGGNPL 276 (375)
T ss_dssp TCCCSEEEEC-GGGGT-----TSCCEEEEEEHHHHTTCCTTSCC--------------------------CS--STTCHH
T ss_pred CCCCCEEEEc-ccccC-----CCCeEEEEEcHHHHhhhcCCCCC--------------------------CC--CCCCHH
Confidence 6 8988666 88862 35678999998887766321100 01 111111
Q ss_pred -HHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecCC-HHHHHHHHHHcCceeeeec
Q 001990 426 -LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-AHAIASAAYKIEMNLRVVD 503 (985)
Q Consensus 426 -l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~-~~~l~~~L~~~Gi~~~~~~ 503 (985)
..+..+++ ..+ +++.++..++.+++++.|++++ ..... +...-+.+..+. ..++.+.|.++||.+....
T Consensus 277 ~~~~~~~~l--~~~-----~~~~~~~~~~~~~l~~~L~~~~-~~~~~-~~g~~~~~~~~~~~~~~~~~l~~~gi~~~~~~ 347 (375)
T 2eh6_A 277 ACRAGTVVV--DEV-----EKLLPHVREVGNYFKEKLKELG-KGKVK-GRGLMLGLELERECKDYVLKALEKGLLINCTA 347 (375)
T ss_dssp HHHHHHHHH--HHH-----HHHHHHHHHHHHHHHHHHHHTT-SSEEE-EETTEEEEECSSCCHHHHHHHHHTTEECEEET
T ss_pred HHHHHHHHH--HHH-----HHHHHHHHHHHHHHHHHHHHHh-cCCce-EEEEEEEEEEcCcHHHHHHHHHHCCCEEecCC
Confidence 11112222 222 1677888889999999999886 32111 111224455554 6789999999999987655
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHh
Q 001990 504 SNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 504 ~~~lris~~~~~t~edid~ll~~l~ 528 (985)
++.+|++++..++++|+++++++|+
T Consensus 348 ~~~iRi~~~~~~~~~~i~~~~~~l~ 372 (375)
T 2eh6_A 348 GKVLRFLPPLIIQKEHIDRAISVLR 372 (375)
T ss_dssp TTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999999986
No 290
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.68 E-value=4.4e-16 Score=179.91 Aligned_cols=259 Identities=15% Similarity=0.132 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHhCCCcccee--cChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCCCcH-----------HHHHh
Q 001990 634 FNNLGEWLCTITGFDSFSLQ--PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNP-----------ATAAM 699 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~~~~--~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~-~~Hg~~~-----------~~~~~ 699 (985)
..++++.+|+++|.+.+.++ ++||++++.+++.++. .++|+||+++ ..|+.+. ..++.
T Consensus 76 ~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all--------~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~ 147 (427)
T 3hvy_A 76 RDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNL--------RPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLRE 147 (427)
T ss_dssp HHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTC--------CTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGG
T ss_pred HHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhc--------CCCCEEEEeCCCCchhHHHHhccccchhhhHHHH
Confidence 56788999999999887443 6788877654444331 4789999987 6665443 23455
Q ss_pred cCcEEEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEc----C-CCccccccCHHHHHHHHHH--cCCEEEEEcccccc
Q 001990 700 CGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTY----P-STHGVYEEGIDEICKIIHD--NGGQVYMDGANMNA 772 (985)
Q Consensus 700 ~G~~v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~----p-n~~G~i~~di~eI~~la~~--~g~lliVD~a~~~~ 772 (985)
.|++++.++. +++.+|+++|+++++++ +++++|++++ | |++|.+. |+++|+++||+ +|++++||+++..+
T Consensus 148 ~G~~~~~v~~-~~~~~d~e~l~~~i~~~-~~tklV~i~~s~gyp~nptg~v~-dl~~i~~ia~~~~~g~~livD~a~~~~ 224 (427)
T 3hvy_A 148 YGVKYKMVDL-KDGKVDINTVKEELKKD-DSIKLIHIQRSTGYGWRKSLRIA-EIAEIIKSIREVNENVIVFVDNCYGEF 224 (427)
T ss_dssp GTCEEEECCC-BTTBCCHHHHHHHHHHC-TTEEEEEEESSCCSSSSCCCCHH-HHHHHHHHHHHHCSSSEEEEECTTCTT
T ss_pred cCCEEEEecC-CCCCcCHHHHHHHhhCC-CCCEEEEEECCCCCCCCccccHH-HHHHHHHHHHHhCCCCEEEEECCcccc
Confidence 7999999998 67899999999999743 5799999998 8 5789988 89999999999 89999999998543
Q ss_pred ccCCCCCCcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhH
Q 001990 773 QVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 773 ~~g~~~~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~ 852 (985)
.. ...|..+|+|++++|+||+|+. .|.|.+|++++++++++.+..+.. ..+.+...+..+..
T Consensus 225 ~~-~~~p~~~gaDiv~~S~sK~lgg---~g~~~GG~i~~~~~li~~l~~~~~-----------~~~~g~~~~~~~~~--- 286 (427)
T 3hvy_A 225 VE-EKEPTDVGADIIAGSLIKNIGG---GIATTGGYIAGKEEYVTQATFRVT-----------VPGIGGECGSTFGV--- 286 (427)
T ss_dssp TS-SSCGGGGTCSEEEEETTSGGGT---TTCCSCEEEEECHHHHHHHHHHHS-----------CTTTGGGCCCCTTC---
T ss_pred cc-CCCCcccCCeEEEECCcccccc---cccceEEEEEECHHHHHHHHHHhh-----------cCCcccccCCCHHH---
Confidence 31 1355678899999999999852 122777999999877765432100 00111101100100
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001990 853 LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 853 ~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~G 931 (985)
++..++.+ ..+..+.++..+++.++++.|++ ++.+ ++++..+ .+.+++.+. ++ ......++++.|....
T Consensus 287 ---a~~~~~gl--~~~~~r~~~~~~~a~~la~~L~~~g~~V-~p~~~~~-~~~li~~~~-l~--~~~~~~~f~~~l~~~~ 356 (427)
T 3hvy_A 287 ---MRSLYEGL--FMAPHVTIEAVKGAVFCARIMELAGFDV-LPKYNDK-RTDIIQAIK-FN--DEKKLIDFIKGIQTAS 356 (427)
T ss_dssp ---HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTCEE-ESCTTSC-CSSSEEEEE-CS--SHHHHHHHHHHHHHTC
T ss_pred ---HHHHHHhH--hHHHHHHHHHHHHHHHHHHHHHhCCCee-cCCCCCC-CceEEEEEe-CC--CHHHHHHHHHHhcccc
Confidence 12222222 22345667788999999999987 6665 5543211 111233322 10 0123456777887754
No 291
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.68 E-value=1.9e-15 Score=179.19 Aligned_cols=313 Identities=12% Similarity=0.095 Sum_probs=187.6
Q ss_pred hhcHHHHHHHHHHHHHHHhCCC--ccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcE
Q 001990 627 AQGYQEMFNNLGEWLCTITGFD--SFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 627 ~~G~~~~~~el~~~la~l~G~~--~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~ 703 (985)
.+|..++.+.+.+++.+..|.+ ... ++++++++++..+ ++.+. ..++++|+++.+.|..+...++..|++
T Consensus 133 ~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~---~~~l~----~~~gd~Vlv~~p~y~~~~~~~~~~g~~ 205 (500)
T 3tcm_A 133 SQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLM---MQLLI----RNEKDGILVPIPQYPLYSASIALHGGA 205 (500)
T ss_dssp TTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHH---HHHHC----CSTTEEEEEEESCCTHHHHHHHHTTCE
T ss_pred CcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHH---HHHHc----CCCCCEEEEeCCCcHhHHHHHHHcCCE
Confidence 3566666777777777776743 333 4555555554333 33221 036789999999888777778899999
Q ss_pred EEEEeCCCC--CCCCHHHHHHHHHhc---CCCeEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccccC
Q 001990 704 IVSVGTDAK--GNINIEELRKAAEAN---RDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVG 775 (985)
Q Consensus 704 v~~v~~~~~--g~iDle~L~~~i~~~---~~~t~~Vvi~~p-n~~G~i~--~di~eI~~la~~~g~lliVD~a~~~~~~g 775 (985)
++.++++++ +.+|+++|++++++. ..++++|++++| |++|.+. +++++|+++|+++|+++++|+++.....+
T Consensus 206 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~ 285 (500)
T 3tcm_A 206 LVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYV 285 (500)
T ss_dssp EEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCC
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccC
Confidence 999998765 489999999999842 127889999999 5789885 25888888899999999999998532211
Q ss_pred CCCC--C------cC-----CCc-EEEeCCcccc-cccCCCCCCcceeeee---cccccCcCCCCccccCCCCCCCCCCC
Q 001990 776 LTSP--G------YI-----GAD-VCHLNLHKTF-CIPHGGGGPGMGPIGV---KKHLAPFLPSHPVVSTGGIPAPEKSQ 837 (985)
Q Consensus 776 ~~~~--g------~~-----g~D-i~~~s~hKtl-~~p~g~GGPg~G~l~~---~~~l~~~lpg~~~g~~~~~~~~~~~~ 837 (985)
-..+ . .+ ..+ +++.|++|+| +. .|.++|++.+ ++++++.+....
T Consensus 286 ~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~----~G~R~G~~~~~~~~~~~~~~l~~~~-------------- 347 (500)
T 3tcm_A 286 DNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGE----CGKRGGYFEITGFSAPVREQIYKIA-------------- 347 (500)
T ss_dssp TTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCC----GGGCCEEEEEESCCTTHHHHHHHHH--------------
T ss_pred CCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCC----CccceEEEEEeCCCHHHHHHHHHHH--------------
Confidence 0000 0 11 122 5567889988 33 3667899987 666654432100
Q ss_pred CCCCcccccchhhhHHHHHHHHHHH---------hchhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEEEE
Q 001990 838 PLGTIAAAPWGSALILPISYTYIAM---------MGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVD 908 (985)
Q Consensus 838 ~t~~i~s~~~g~~~~~~~A~a~l~~---------lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~vv~ 908 (985)
. ...+++..++. ++...+.. .-.+.+.+..++..++++++.+.|++...+.+..+++..+ +.++
T Consensus 348 ~-~~~~~~~~~q~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g~~~--~~~~ 420 (500)
T 3tcm_A 348 S-VNLCSNITGQI----LASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMY--VFPQ 420 (500)
T ss_dssp H-TTCCCCHHHHH----HHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBTTE--ECCE
T ss_pred h-cccCCCHHHHH----HHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCeEEE--Eeee
Confidence 0 01111111121 11111210 0012234455566788889999998732333323323222 1222
Q ss_pred ecCccc-------cCCCCHHH--HHHHHHHCCCccCCCC-C---CCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 909 LRGLKN-------TAGIEPED--VAKRLMDYGFHGPTMS-W---PVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 909 ~~~~~~-------~~g~~~~~--l~~~L~e~Gi~~~~~~-~---pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
+. ++. ..+..... +.+.|.++||.+...+ | +..+.+|+++. +++++++ ++++.|++++++.
T Consensus 421 ~~-lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~~~e~i~---~~i~~l~~~~~~~ 494 (500)
T 3tcm_A 421 IC-LPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--PQEDKIP---AVISRFTVFHEAF 494 (500)
T ss_dssp EC-CCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--SCTTTHH---HHHHHHHHHHHHH
T ss_pred ec-CchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--CCHHHHH---HHHHHHHHHHHHH
Confidence 21 000 00122222 2355667899874321 2 22357999998 8899999 9999999988876
Q ss_pred HH
Q 001990 976 TF 977 (985)
Q Consensus 976 ~~ 977 (985)
.+
T Consensus 495 ~~ 496 (500)
T 3tcm_A 495 MS 496 (500)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 292
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.68 E-value=1e-15 Score=176.26 Aligned_cols=246 Identities=16% Similarity=0.087 Sum_probs=166.9
Q ss_pred HHHHHHHHHHhhCCCCcceee-ccchHHHHHHHHHHhhhhcCCCCEEEEcC-CCChhHHHHHH------HhhcCCCeEEE
Q 001990 213 LLNFQTMIADLTGLPMSNASL-LDEGTAAAEAMAMCNNIQKGKKKTFIIAS-NCHPQTIDICI------TRADGFDIKVV 284 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl-~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~-~~h~s~~~~~~------~~a~~~gi~v~ 284 (985)
..++++.+|+++|.+.+.+.. +.+||+++.+++.++. . +||+||+++ ..|+.+...+. ..++..|++++
T Consensus 61 ~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all-~--~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~ 137 (409)
T 3jzl_A 61 RDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGIL-R--PDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYS 137 (409)
T ss_dssp HHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHC-C--TTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEE
T ss_pred HHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhc-C--CCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEE
Confidence 455778999999998742221 7889988877776652 3 899999998 89998887652 23456799999
Q ss_pred EeCc--------hhhhc-cCCCEeEEEEEc----C-CCCeeeccHHHHHHHHHh--CCcEEEEEeccccccC-CCCCCcc
Q 001990 285 VSDL--------KDIDY-KSGDVCGVLVQY----P-GTEGEVLDYGDFIKNAHA--NGVKVVMATDLLALTI-LKPPGEL 347 (985)
Q Consensus 285 ~~~~--------~~l~~-l~~~t~~V~v~~----p-n~~G~i~dl~~I~~~a~~--~galliV~a~~~alg~-l~~p~~~ 347 (985)
++|. +++++ ++++|++|++++ | |++|.+.|+++|+++||+ +|++++|| +.++.+. ...|.++
T Consensus 138 ~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD-~a~~~~~~~~~p~~~ 216 (409)
T 3jzl_A 138 SVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVD-NCYGEFVEYQEPPEV 216 (409)
T ss_dssp ECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEE-CTTCTTTSSCCSGGG
T ss_pred EeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEe-CCcccccccCCcccc
Confidence 8875 35555 788999999998 8 789999999999999999 99999995 4555555 3467789
Q ss_pred cceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHH
Q 001990 348 GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQAL 426 (985)
Q Consensus 348 GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l 426 (985)
|+|++++|. |.++++ |.|..|+++.++++++++..+.. ...+.+.-+.+. ...
T Consensus 217 g~Div~~S~sK~lgg~---~~~~GG~v~~~~~li~~l~~~~~-------------------~~~~g~~~g~~~----~~~ 270 (409)
T 3jzl_A 217 GADIIAGSLIKNPGGG---LAKTGGYIAGKEALVDLCGYRLT-------------------TPGIGREAGASL----YSL 270 (409)
T ss_dssp TCSEEEEETTSGGGTT---TCSSCEEEEECHHHHHHHHHHHS-------------------CTTTGGGCCCCT----TCH
T ss_pred CCeEEEECccccCCcc---CCceEEEEEeCHHHHHHHHHHhc-------------------cccccccccccH----HHH
Confidence 999999998 888642 22445899999988876521100 000111111110 111
Q ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCC---Ccc-eEEEecCC---HHHHHHHHHHcC
Q 001990 427 LANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP---FFD-TVKVKCAD---AHAIASAAYKIE 496 (985)
Q Consensus 427 ~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~---~~~-~~~i~~~~---~~~l~~~L~~~G 496 (985)
.++..+ .+-+..+.++..+++.++++.|+++| +++...+ ..+ .+.|.+++ +.++.+.|....
T Consensus 271 ~~~l~g-------l~~~~~r~~~~~~~a~~la~~L~~~g-~~v~p~~~~~~~~~i~~i~l~~~~~~~~~~~~L~~~~ 339 (409)
T 3jzl_A 271 LEMYQG-------FFLAPHVTAQAIKGARFTAAMLAEFG-VEADPVWDAPRTDLIQSVSFHNKEKMVAFAQAIQAAS 339 (409)
T ss_dssp HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHTT-CEEESCTTSCCSSSCCEEECSCHHHHHHHHHHHHHTS
T ss_pred HHHHHH-------HhhHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCCCCCccEEEEEEeCCHHHHHHHHHHHHhcC
Confidence 111111 12345677788899999999999998 8875321 111 23444443 566777777653
No 293
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.68 E-value=4.3e-16 Score=180.44 Aligned_cols=275 Identities=13% Similarity=0.111 Sum_probs=167.6
Q ss_pred eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeC--CCCCCCCHHHHHHHHHhcCC
Q 001990 652 LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT--DAKGNINIEELRKAAEANRD 729 (985)
Q Consensus 652 ~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~--~~~g~iDle~L~~~i~~~~~ 729 (985)
+++++|++++..++.... .. .++++|+++++.|..+...++..|.+++.+|+ ++++.+|+++|+++++++++
T Consensus 121 ~~t~G~t~al~~~~~~~~-~~-----~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 194 (420)
T 4f4e_A 121 AQALGGTGALKIGADFLR-TL-----NPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGYEP 194 (420)
T ss_dssp EEEEHHHHHHHHHHHHHH-HH-----CTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTCCT
T ss_pred EECCccHHHHHHHHHHHH-Hh-----CCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhCCC
Confidence 555666666544321111 11 36788999998777776777889999999998 34688999999999986657
Q ss_pred CeEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccccCCC-C-------CCcCCCcEEEeCCccccccc
Q 001990 730 NLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVGLT-S-------PGYIGADVCHLNLHKTFCIP 798 (985)
Q Consensus 730 ~t~~Vvi~~p-n~~G~i~--~di~eI~~la~~~g~lliVD~a~~~~~~g~~-~-------~g~~g~Di~~~s~hKtl~~p 798 (985)
+++++++++| |++|.+. .++++|+++|+++|+++++|+++.....+.. . ++..+.++++.|++|+|+.
T Consensus 195 ~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~- 273 (420)
T 4f4e_A 195 GTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSL- 273 (420)
T ss_dssp TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTC-
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcC-
Confidence 8899999988 5799884 2588999999999999999998732111100 0 0123456888899999854
Q ss_pred CCCCCCcceeeee---cccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhc-----hhhHHH
Q 001990 799 HGGGGPGMGPIGV---KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG-----SKGLTE 870 (985)
Q Consensus 799 ~g~GGPg~G~l~~---~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg-----~~gl~~ 870 (985)
.|.++|++++ ++++.+.+....... ....+++.+. .++ .++..++.... .+.+.+
T Consensus 274 ---~G~RiG~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~--~~~----~~~~~~l~~~~l~~~~~~~~~~ 336 (420)
T 4f4e_A 274 ---YGERVGALSIITDSKDEAARVLSQLKRV--------IRTNYSNPPT--HGG----AIVAAVLASPELRASWVQELGE 336 (420)
T ss_dssp ---GGGCEEEEEEECSSHHHHHHHHHHHHHH--------HHTTTSSCCS--HHH----HHHHHHHHCHHHHHHHHHHHHH
T ss_pred ---cCCCcEEEEEEcCCHHHHHHHHHHHHHH--------HhcccCCCCH--HHH----HHHHHHhcCHHHHHHHHHHHHH
Confidence 3677998864 233322110000000 0001111111 111 11112222110 233455
Q ss_pred HHHHHHHHHHHHHHHHhccC---CeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEE
Q 001990 871 ASKIAILNANYMAKRLEKHY---PILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMI 947 (985)
Q Consensus 871 ~~~~~~~~a~~l~~~L~~~~---~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lri 947 (985)
..++..++++++.+.|++.. .+.+..+++.. +++ + +.+.+.+.+.|.++||.+.. + .|+
T Consensus 337 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~---~~~-~-------~~~~~~~~~~l~~~gI~v~~------~-~Ri 398 (420)
T 4f4e_A 337 MRDRIRAMRNGLVERLKAAGIERDFSFINAQRGM---FSY-S-------GLTSAQVDRLREEFGIYAVS------T-GRI 398 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSS---EEE-C-------CCCHHHHHHHHHHHCEECCT------T-SEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCceeECCCccE---EEE-e-------CCCHHHHHHHHHhCCEEecC------C-CeE
Confidence 66677788899999998631 22111111111 111 1 34567777888889998752 1 388
Q ss_pred eccCCCCHHhhchHHHHHHHHHHHH
Q 001990 948 EPTESESKVCHNREDLFFQILLSLT 972 (985)
Q Consensus 948 s~t~~~t~eeId~~~~~i~aL~~i~ 972 (985)
+++. .++++|+ +++++|++++
T Consensus 399 s~~~-~~~~~i~---~~~~~l~~~l 419 (420)
T 4f4e_A 399 CVAA-LNTRNLD---VVANAIAAVL 419 (420)
T ss_dssp EGGG-CCTTTHH---HHHHHHHHHH
T ss_pred EEec-CCHHHHH---HHHHHHHHHh
Confidence 8864 4677899 9999998764
No 294
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.68 E-value=1.3e-15 Score=174.29 Aligned_cols=285 Identities=13% Similarity=0.156 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001990 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~--- 288 (985)
...++++.+|+++|.+ ++.++.|||.+++.++.+++.. +||+|+++...|+++...++. .|++++.++.
T Consensus 40 ~~~~l~~~la~~~~~~--~~~~~~~gt~al~~~~~~~~~~--~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~v~~~~~ 111 (393)
T 1mdo_A 40 KNQELEAAFCRLTGNQ--YAVAVSSATAGMHIALMALGIG--EGDEVITPSMTWVSTLNMIVL----LGANPVMVDVDRD 111 (393)
T ss_dssp HHHHHHHHHHHHHCCS--EEEEESCHHHHHHHHHHHTTCC--TTCEEEEESSSCHHHHHHHHH----TTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHhCCC--cEEEecChHHHHHHHHHHcCCC--CCCEEEeCCCccHhHHHHHHH----CCCEEEEEeccCC
Confidence 3456889999999986 4778899999888887776333 789999999999999887753 5888887764
Q ss_pred ------hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCCCCccc-ceEEEecC---c
Q 001990 289 ------KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELG-ADIVVGSA---Q 357 (985)
Q Consensus 289 ------~~l~~-l~~~t~~V~v~~pn~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~p~~~G-aDi~v~s~---k 357 (985)
+++++ +++++++|++++ ++|.+.|+++|.++|+++|+++++| +..+.|.......+| .|+++.|. |
T Consensus 112 ~~~~d~~~l~~~l~~~~~~v~~~~--~~G~~~~~~~i~~l~~~~~~~li~D-~a~~~g~~~~~~~~~~~d~~~~S~~k~K 188 (393)
T 1mdo_A 112 TLMVTPEHIEAAITPQTKAIIPVH--YAGAPADLDAIYALGERYGIPVIED-AAHATGTSYKGRHIGARGTAIFSFHAIK 188 (393)
T ss_dssp TCCBCHHHHHHHCCTTEEEECCBC--GGGCCCCHHHHHHHHHHHTCCBCEE-CTTCTTCEETTEETTSSSEEEEECCTTS
T ss_pred cCCCCHHHHHHhcCCCceEEEEeC--CCCCcCCHHHHHHHHHHcCCeEEEE-CccccCCeECCeecCCCCeEEEeCCCCC
Confidence 34555 777899998875 5899999999999999999999995 344544322222356 89999996 4
Q ss_pred cccccCCCCCCceEEEEEc-hhhHhcCCCc-eeeeeecCCCCcceEEeccccccccccc---ccC-CCccchhHHHHHHH
Q 001990 358 RFGVPMGYGGPHAAFLATS-QEYKRMMPGR-IVGVSIDSSGKPALRVAMQTREQHIRRD---KAT-SNICTAQALLANMA 431 (985)
Q Consensus 358 ~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~-~vG~s~d~~g~~~~~l~l~tre~~~rre---~at-sni~t~~~l~a~~a 431 (985)
.++ |+..|++.++ +++.+.+... ..|...+.. .. | + .....+.+ .|+ .++ ..+.+..+
T Consensus 189 ~l~------~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~-~~-~---~--~~~~~~~~~~~~g~~~~~---~~~~~a~~ 252 (393)
T 1mdo_A 189 NIT------CAEGGIVVTDNPQFADKLRSLKFHGLGVDAW-DR-Q---S--GGRAPQAEVLAPGYKYNL---PDLNAAIA 252 (393)
T ss_dssp SSC------SSSCEEEEESCHHHHHHHHHHTBTTEECC------------------CCEESSCCCBCCC---CHHHHHHH
T ss_pred ccc------cccceEEEeCCHHHHHHHHHHHhcCCcccch-hh-h---c--ccccccccccccCccCCC---CHHHHHHH
Confidence 332 2245788886 6666554211 112111100 00 0 0 00001111 122 111 22222111
Q ss_pred HHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCC------CcceEEEecC----C--HHHHHHHHHHcCcee
Q 001990 432 AMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP------FFDTVKVKCA----D--AHAIASAAYKIEMNL 499 (985)
Q Consensus 432 a~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~------~~~~~~i~~~----~--~~~l~~~L~~~Gi~~ 499 (985)
. . ..++++++.++..++++++++.|++++ +++...+ ....+.+..+ + ..++.+.|.++||.+
T Consensus 253 ~---~--~l~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v 326 (393)
T 1mdo_A 253 L---A--QLQKLDALNARRAAIAAQYHQAMADLP-FQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGT 326 (393)
T ss_dssp H---H--HHHTHHHHHHHHHHHHHHHHHHHHTSS-CEECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCC
T ss_pred H---H--HHHHHHHHHHHHHHHHHHHHHHHhcCC-cccccCCCCCCCceeEEEEEEecccccccCHHHHHHHHHhCCCCc
Confidence 1 1 124578888888899999999999987 8875321 1123555554 2 788999999999977
Q ss_pred eeec-------------------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 500 RVVD-------------------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 500 ~~~~-------------------------~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+... ...+|++++..+|++|+++++++|..
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~ 381 (393)
T 1mdo_A 327 GLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQ 381 (393)
T ss_dssp BCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred ccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHH
Confidence 5421 23799999999999999999999974
No 295
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.68 E-value=1.2e-15 Score=175.16 Aligned_cols=288 Identities=11% Similarity=0.064 Sum_probs=172.9
Q ss_pred HHHHHHHHHhCCC------ccce-e--cChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEE
Q 001990 636 NLGEWLCTITGFD------SFSL-Q--PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVS 706 (985)
Q Consensus 636 el~~~la~l~G~~------~~~~-~--~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~ 706 (985)
++++.++++++.. ...+ + +++|++++..++.+++.+. .++++|+++++.|..+...++..|.+++.
T Consensus 75 ~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~-----~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~ 149 (401)
T 7aat_A 75 DFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFF-----KFSRDVYLPKPSWGNHTPIFRDAGLQLQA 149 (401)
T ss_dssp HHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHC-----TTCCEEEEEESCCTTHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhc-----cCCCEEEEcCCCchhHHHHHHHcCCeeEe
Confidence 4555555555321 2233 2 5566666544444433221 36789999999888888888899999999
Q ss_pred EeCC--CCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEcccccc-ccCC--CC
Q 001990 707 VGTD--AKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNA-QVGL--TS 778 (985)
Q Consensus 707 v~~~--~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~--~di~eI~~la~~~g~lliVD~a~~~~-~~g~--~~ 778 (985)
+|++ .++.+|++++++.+++..+++++|++++| |++|.+. .++++|+++|+++|+++++|+++... ..+. ..
T Consensus 150 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~ 229 (401)
T 7aat_A 150 YRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDA 229 (401)
T ss_dssp EECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHT
T ss_pred eeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccH
Confidence 9985 35889999999888765568899999999 5789764 26899999999999999999987421 1110 00
Q ss_pred ------CCcCCCcEEEeCCcccccccCCCCCCcceeeee---ccc----ccCcCCCCccccCCCCCCCCCCCCCCCcccc
Q 001990 779 ------PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGV---KKH----LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAA 845 (985)
Q Consensus 779 ------~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~---~~~----l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~ 845 (985)
.....-.+++.|+||+|+. .|.++|++++ +++ +...+.... ...+.+...
T Consensus 230 ~~~~~~~~~~~~~i~~~S~sK~~~~----~G~RiG~l~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~- 292 (401)
T 7aat_A 230 WALRHFIEQGIDVVLSQSYAKNMGL----YGERAGAFTVICRDAEEAKRVESQLKILI------------RPMYSNPPM- 292 (401)
T ss_dssp HHHHHHHHTTCCCEEEEECTTTSCC----GGGCEEEEEEECSSHHHHHHHHHHHHHHH------------HHHHSSCCH-
T ss_pred HHHHHHHhcCCcEEEEecCCccccc----ccCceEEEEEEeCCHHHHHHHHHHHHHHH------------HhccCCCCh-
Confidence 0112345788999999854 3677999876 333 222111000 000111110
Q ss_pred cchhhhHHHHHHHHHHH--h-c--hhhHHHHHHHHHHHHHHHHHHHhc-cCC--eeEcCCCCceeEEEEEEecCccccCC
Q 001990 846 PWGSALILPISYTYIAM--M-G--SKGLTEASKIAILNANYMAKRLEK-HYP--ILFRGVNGTVAHEFIVDLRGLKNTAG 917 (985)
Q Consensus 846 ~~g~~~~~~~A~a~l~~--l-g--~~gl~~~~~~~~~~a~~l~~~L~~-~~~--i~~~g~~~~~~~~~vv~~~~~~~~~g 917 (985)
.....+..++.. + . .+.+.+..++..++++++.+.|++ +.. +....+++.+ +++ . +
T Consensus 293 -----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~---~~~--~------~ 356 (401)
T 7aat_A 293 -----NGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGM---FCF--T------G 356 (401)
T ss_dssp -----HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHCCSS---EEE--C------C
T ss_pred -----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecCCcce---EEe--c------C
Confidence 111111111210 0 0 122445556677888899999976 311 2111111211 111 1 2
Q ss_pred CCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHH
Q 001990 918 IEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLT 972 (985)
Q Consensus 918 ~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~ 972 (985)
.+.+.+...|.++||.+. +.+|++++..++ +||| +++++|++++
T Consensus 357 ~~~~~~~~ll~~~gi~v~-------~~~Ris~~~~~~-~~i~---~~~~~l~~~~ 400 (401)
T 7aat_A 357 LKPEQVERLTKEFSIYMT-------KDGRISVAGVAS-SNVG---YLAHAIHQVT 400 (401)
T ss_dssp CCHHHHHHHHHHHCEECC-------TTCEEEGGGCCT-TTHH---HHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCEecc-------CCCeEEeccCCh-hhHH---HHHHHHHHHh
Confidence 455666555577899874 237999876554 5599 9999998765
No 296
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.68 E-value=4.3e-15 Score=172.34 Aligned_cols=291 Identities=12% Similarity=0.093 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCCCcHHHHHhc-----------
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAAMC----------- 700 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv-~~~~Hg~~~~~~~~~----------- 700 (985)
...+++++++++++-....++.++|++++++++.+++.+. ++++||+ ...+|+.........
T Consensus 93 ~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~~------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 166 (427)
T 3fq8_A 93 LENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYT------GRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPS 166 (427)
T ss_dssp HHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH------CCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCS
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhh------CCCEEEEECCCcCCCCHHHHHhcCCcccccCCCC
Confidence 4567889999998632335778899988877776666542 3456665 556777554322111
Q ss_pred --Cc------EEEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEc
Q 001990 701 --GM------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDG 767 (985)
Q Consensus 701 --G~------~v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~d----i~eI~~la~~~g~lliVD~ 767 (985)
|+ ++..+|.+ |+++|+++++++++++++|+++.+ +..|.+. + +++|+++|++||+++|+|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~-~~~~~l~~l~~l~~~~~~~li~DE 240 (427)
T 3fq8_A 167 SPGVPKKTTANTLTTPYN-----DLEAVKALFAENPGEIAGVILEPIVGNSGFIV-PDAGFLEGLREITLEHDALLVFDE 240 (427)
T ss_dssp CSSSCHHHHTTEEEEETT-----CHHHHHHHHHHSTTTEEEEEECSSBCTTSCBC-CCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCCCcccCceeecCCC-----CHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEec
Confidence 11 24455543 899999999866557888877655 3578776 6 9999999999999999999
Q ss_pred cccccccCCCCC-----CcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCc
Q 001990 768 ANMNAQVGLTSP-----GYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTI 842 (985)
Q Consensus 768 a~~~~~~g~~~~-----g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i 842 (985)
+|. ++ ..... ....+|+++++ |+|+ +|.++|++++++++++.+...... ...+ +
T Consensus 241 v~~-g~-~~g~~~~~~~~~~~~di~t~s--K~~~-----~G~~~G~~~~~~~~~~~~~~~~~~---------~~~~--t- 299 (427)
T 3fq8_A 241 VIT-GF-RIAYGGVQEKFGVTPDLTTLG--KIIG-----GGLPVGAYGGKREIMQLVAPAGPM---------YQAG--T- 299 (427)
T ss_dssp TTT-BT-TTBTTHHHHHTTCCCSEEEEC--GGGG-----TTSSCEEEEECHHHHTTBTTTSSB---------CCCC--T-
T ss_pred ccc-cc-ccCcchhhHhcCCCCChhhhh--hhhh-----CCcceEEEEEcHHHHHhhccCCCc---------cccC--C-
Confidence 985 22 11110 11236887664 9885 356789999998887665421000 0001 1
Q ss_pred ccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc---CCe--eEcCCCCceeEEEEEEecCcc----
Q 001990 843 AAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPI--LFRGVNGTVAHEFIVDLRGLK---- 913 (985)
Q Consensus 843 ~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~---~~i--~~~g~~~~~~~~~vv~~~~~~---- 913 (985)
+.+++..++++.+.+..+..+++ .++..++.+++++.|++. +.+ ...+. +. .+.+.+....
T Consensus 300 ---~~~~~~~~aa~~aal~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-g~---~~~~~~~~~~~~~~ 369 (427)
T 3fq8_A 300 ---LSGNPLAMTAGIKTLELLRQPGT---YEYLDQITKRLSDGLLAIAQETGHAACGGQV-SG---MFGFFFTEGPVHNY 369 (427)
T ss_dssp ---TTTCHHHHHHHHHHHHHHTSTTH---HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEE-TT---EEEEESSSCCCCSH
T ss_pred ---CCcCHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe-ee---EEEEEEecCccccc
Confidence 11234445555666666655544 345566677777777651 221 11110 11 1233332100
Q ss_pred ----ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 914 ----NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 914 ----~~~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
...+....++.+.|.++||.+..... . |++++..+|++|++ +++++|++++++
T Consensus 370 ~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~---~--r~~~~~~~t~e~i~---~~l~~l~~~l~~ 426 (427)
T 3fq8_A 370 EDAKKSDLQKFSRFHRGMLEQGIYLAPSQF---E--AGFTSLAHTEEDID---ATLAAARTVMSA 426 (427)
T ss_dssp HHHTTSCHHHHHHHHHHHHHTTEECCSSTT---S--CEECCTTCCHHHHH---HHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHCCcEEecCCC---C--CEEeeCcCCHHHHH---HHHHHHHHHHHh
Confidence 00001145788999999999864332 2 56677889999999 999999988764
No 297
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.68 E-value=1.2e-14 Score=164.76 Aligned_cols=264 Identities=13% Similarity=0.118 Sum_probs=184.0
Q ss_pred HHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchh---
Q 001990 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKD--- 290 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~~~--- 290 (985)
.++++.+|+++|.++.++.+++|+|.+++.++.++ ++|+|+++...|+.+...++. .|.+++.++.+.
T Consensus 62 ~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~-----~gd~vl~~~p~y~~~~~~~~~----~g~~~~~v~~~~~~~ 132 (364)
T 1lc5_A 62 FHLHQALARHHQVPASWILAGNGETESIFTVASGL-----KPRRAMIVTPGFAEYGRALAQ----SGCEIRRWSLREADG 132 (364)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH-----CCSEEEEEESCCTHHHHHHHH----TTCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc-----CCCeEEEeCCCcHHHHHHHHH----cCCeEEEEeCCcccc
Confidence 45778999999998888989999998888776654 349999999999998877653 578887776431
Q ss_pred ---hh---c-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEeccccccCC------CCCCcccceEEE
Q 001990 291 ---ID---Y-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL------KPPGELGADIVV 353 (985)
Q Consensus 291 ---l~---~-l~~~t~~V~v~~p-n~~G~i~d---l~~I~~~a~~~galliV~a~~~alg~l------~~p~~~GaDi~v 353 (985)
++ + +++++++|++.+| |.+|.+.| +++|+++|+++|+++++|. ..+.... .....++.|+++
T Consensus 133 ~~~l~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~i~~ 211 (364)
T 1lc5_A 133 WQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDE-AFIDFIPHETGFIPALKDNPHIWVL 211 (364)
T ss_dssp TCCCTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC-TTGGGSTTCCCSGGGCTTCTTEEEE
T ss_pred cchhHHHHHhccCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEEC-cChhhccCccchhhHhccCCCEEEE
Confidence 23 2 5578899998988 67999987 9999999999999999952 3332211 112457889999
Q ss_pred ecC-ccccccCCCCCCceEEEE-EchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHH
Q 001990 354 GSA-QRFGVPMGYGGPHAAFLA-TSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMA 431 (985)
Q Consensus 354 ~s~-k~lg~P~~~GGP~~G~l~-~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~a 431 (985)
+|. |.|+.| |-.+|+++ .++++++.+... ..+.+. ..+ +..+
T Consensus 212 ~s~sK~~~~~----G~r~G~~~~~~~~~~~~l~~~----------------------------~~~~~~---~~~-~~~~ 255 (364)
T 1lc5_A 212 RSLTKFYAIP----GLRLGYLVNSDDAAMARMRRQ----------------------------QMPWSV---NAL-AALA 255 (364)
T ss_dssp EESTTTTTCT----TTCCEEEECCCHHHHHHHHHH----------------------------SCTTCS---CHH-HHHH
T ss_pred EECchhhcCC----ccceEEEEECCHHHHHHHHHh----------------------------CCCCCC---CHH-HHHH
Confidence 998 877532 33468998 888877654100 000111 111 1112
Q ss_pred HHHHHHc-CcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecCC-HHHHHHHHHHcCceeeee------c
Q 001990 432 AMYAVYH-GPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-AHAIASAAYKIEMNLRVV------D 503 (985)
Q Consensus 432 a~y~~~~-g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~-~~~l~~~L~~~Gi~~~~~------~ 503 (985)
+. ..+ ..+.++++.++..++.+++.+.|++++++++... ...-+.+..++ ..++.+.|.++||.+... .
T Consensus 256 ~~--~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~g~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~ 332 (364)
T 1lc5_A 256 GE--VALQDSAWQQATWHWLREEGARFYQALCQLPLLTVYPG-RANYLLLRCEREDIDLQRRLLTQRILIRSCANYPGLD 332 (364)
T ss_dssp HH--HGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCC-SSSEEEEEESCTTCCHHHHHHTTTEECEECTTSTTCC
T ss_pred HH--HHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCC-CCeEEEEECCCcHHHHHHHHHHCCcEEeeCcccCCCC
Confidence 21 111 1346788888889999999999998833887632 12224455554 567888999999988642 1
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 504 SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 ~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
++.+|++++ +.+|+++++++|..
T Consensus 333 ~~~iRis~~---~~~~~~~l~~~l~~ 355 (364)
T 1lc5_A 333 SRYYRVAIR---SAAQNERLLAALRN 355 (364)
T ss_dssp TTEEEEECC---CHHHHHHHHHHHHH
T ss_pred CCEEEEEeC---CHHHHHHHHHHHHH
Confidence 478999965 68999999999974
No 298
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.67 E-value=2.9e-14 Score=162.24 Aligned_cols=321 Identities=13% Similarity=0.092 Sum_probs=202.5
Q ss_pred HHHHHHHHHHcCCCccceecCCCCCCCCCcHHHHHHHHhCC--ccccccCCChhhHhhHHHHHHHHHHHHHHHhh----C
Q 001990 152 QMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENP--AWYTQYTPYQAEIAQGRLESLLNFQTMIADLT----G 225 (985)
Q Consensus 152 e~~~~~~~~~~~n~~~~~~lG~g~~~~~~p~~v~~~i~~~~--~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~----g 225 (985)
++.+...+....+..+.+| +.|.++...|+.+.+++.+.- .....|.+ .+| ..++++.+|+++ |
T Consensus 12 ~~~~~~~~~~~~g~~~idl-~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-----~~~----~~~l~~~ia~~~~~~~g 81 (376)
T 2dou_A 12 VVDEAKRKARERGVGLIDL-SIGSTDLPPPEAPLKALAEALNDPTTYGYCL-----KSC----TLPFLEEAARWYEGRYG 81 (376)
T ss_dssp HHHHHHHHHHHTTCCCEEC-SSCCCCCCCCHHHHHHHHHHTTCGGGSSCCC-----HHH----HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhccCCCEEec-cCCCCCCCCCHHHHHHHHHHHhCCCcCCCCC-----CCC----CHHHHHHHHHHHHHHhC
Confidence 3444444443444444443 344444445666654544321 11223332 122 345666777776 8
Q ss_pred CC--Cc-ceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc--------hhhhc-
Q 001990 226 LP--MS-NASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------KDIDY- 293 (985)
Q Consensus 226 ~~--~~-~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~--------~~l~~- 293 (985)
.+ +. ++.+++|+|.+++.++.++. ++||+|++++..|+.+...++. .|.+++.++. +++++
T Consensus 82 ~~~~~~~~v~~~~g~~~a~~~~~~~l~---~~gd~vl~~~p~y~~~~~~~~~----~g~~~~~~~~~~~~~~d~~~l~~~ 154 (376)
T 2dou_A 82 VGLDPRREALALIGSQEGLAHLLLALT---EPEDLLLLPEVAYPSYFGAARV----ASLRTFLIPLREDGLADLKAVPEG 154 (376)
T ss_dssp CCCCTTTSEEEESSHHHHHHHHHHHHC---CTTCEEEEESSCCHHHHHHHHH----TTCEEEEECBCTTSSBCGGGSCHH
T ss_pred CCCCCCccEEEcCCcHHHHHHHHHHhc---CCCCEEEECCCCcHhHHHHHHH----cCCEEEEeeCCCCCCCCHHHHHHh
Confidence 75 23 78888999988887776652 2789999999999998887653 5788877764 34444
Q ss_pred cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEeccccccCCC----C----CCcccceEEEecC-cccc
Q 001990 294 KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILK----P----PGELGADIVVGSA-QRFG 360 (985)
Q Consensus 294 l~~~t~~V~v~~p-n~~G~i~d---l~~I~~~a~~~galliV~a~~~alg~l~----~----p~~~GaDi~v~s~-k~lg 360 (985)
+++++++|++++| |.+|.+.+ +++|+++|+++|+++++| +..+..... + .+.++.|++++|. |.|+
T Consensus 155 l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D-e~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 233 (376)
T 2dou_A 155 VWREAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHD-NPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYN 233 (376)
T ss_dssp HHHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE-CTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHT
T ss_pred hccCceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEE-ccchhcccCCCCCChhhcCCCCCcEEEEecchhhcC
Confidence 5567999999888 67998865 788999999999999995 233322110 1 1235778989887 8775
Q ss_pred ccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhH-HHHHHHHHHHHHcC
Q 001990 361 VPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQA-LLANMAAMYAVYHG 439 (985)
Q Consensus 361 ~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~-l~a~~aa~y~~~~g 439 (985)
.| |..+|++++++++++.+... +. ..+ .+++.. ..++.++ +. .+
T Consensus 234 ~~----G~r~G~~~~~~~~~~~l~~~-------------------------~~-~~~--~~~~~~~~~a~~~~--l~-~~ 278 (376)
T 2dou_A 234 LA----GFRLGFALGSEEALARLERV-------------------------KG-VID--FNQYAGVLRMGVEA--LK-TP 278 (376)
T ss_dssp CG----GGCCEEEEECHHHHHHHHHH-------------------------HH-HHC--CCSCHHHHHHHHHH--HT-SC
T ss_pred Ch----hheeEEEecCHHHHHHHHHH-------------------------HH-hcc--cCCCHHHHHHHHHH--Hh-Cc
Confidence 32 33468999988877655100 00 000 111112 1122121 12 23
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeee------cCCeEEEE
Q 001990 440 PEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVV------DSNTVTAS 510 (985)
Q Consensus 440 ~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~---~~~l~~~L~~~Gi~~~~~------~~~~lris 510 (985)
.+.++++.++..++.+++.+.|+++ +++.......-+.+..+. ..++.++|.++||.+... .++.+|++
T Consensus 279 ~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris 356 (376)
T 2dou_A 279 KEVVRGYARVYRERALGMAEALKGV--LSLLPPRATMYLWGRLPEGVDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIA 356 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT--SEECCCCBSSEEEEECCTTCCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--cCccCCCeeEEEEEECCCCCCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEE
Confidence 5567888888999999999999886 555432111113345542 678999999999987542 14789999
Q ss_pred eccCCCHHHHHHHHHHHhC
Q 001990 511 FDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 511 ~~~~~t~edid~ll~~l~~ 529 (985)
++. ++++++++++.|..
T Consensus 357 ~~~--~~~~i~~~l~~l~~ 373 (376)
T 2dou_A 357 LVR--PLEELLEAAKRIRE 373 (376)
T ss_dssp CCS--CHHHHHHHHHHHHH
T ss_pred ecC--CHHHHHHHHHHHHH
Confidence 985 79999999999864
No 299
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.67 E-value=1.5e-14 Score=165.31 Aligned_cols=268 Identities=11% Similarity=0.023 Sum_probs=181.2
Q ss_pred HHHHHHHh----hCC--CCc-ceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001990 216 FQTMIADL----TGL--PMS-NASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 216 ~q~~ia~L----~g~--~~~-~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~ 288 (985)
+++.+|++ .|. ++. ++.+++|+|.+++.++.++. . +||+|++++..|+++...++. .|.+++.++.
T Consensus 72 l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~-~--~gd~vl~~~p~~~~~~~~~~~----~g~~~~~v~~ 144 (386)
T 1u08_A 72 LREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALV-R--NGDEVICFDPSYDSYAPAIAL----SGGIVKRMAL 144 (386)
T ss_dssp HHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHC-C--TTCEEEEEESCCTTHHHHHHH----TTCEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhC-C--CCCEEEEeCCCchhHHHHHHH----cCCEEEEeec
Confidence 34445544 574 455 78899999988888776652 2 789999999999998887643 5777776643
Q ss_pred ---------hhhhc-cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEeccccccCC-----CCC----C
Q 001990 289 ---------KDIDY-KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTIL-----KPP----G 345 (985)
Q Consensus 289 ---------~~l~~-l~~~t~~V~v~~p-n~~G~i~---dl~~I~~~a~~~galliV~a~~~alg~l-----~~p----~ 345 (985)
+++++ +++++++|++++| |.+|.+. ++++|+++|+++|+++++|. ..+.... .+. +
T Consensus 145 ~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~g~~~~~~~~~~~ 223 (386)
T 1u08_A 145 QPPHFRVDWQEFAALLSERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDE-VYEHINFSQQGHASVLAHPQ 223 (386)
T ss_dssp CTTTCCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEEC-TTTTCBCCSSCCCCGGGSHH
T ss_pred CcccCcCCHHHHHHhhcccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEc-cccccccCCCCCcChhcccC
Confidence 34555 7788999999988 6899887 47999999999999999952 3332111 011 1
Q ss_pred cccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchh
Q 001990 346 ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQ 424 (985)
Q Consensus 346 ~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~ 424 (985)
.++.|++++|. |.|+.| |-.+|++++++++++.+... ++ ..+ .+.+.
T Consensus 224 ~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~~~-------------------------~~-~~~--~~~~~ 271 (386)
T 1u08_A 224 LRERAVAVSSFGKTYHMT----GWKVGYCVAPAPISAEIRKV-------------------------HQ-YLT--FSVNT 271 (386)
T ss_dssp HHTTEEEEEEHHHHTTCG----GGCCEEEECCHHHHHHHHHH-------------------------HH-HHT--SSCCH
T ss_pred ccCcEEEEecchhhcCCc----ccceEEEEcCHHHHHHHHHH-------------------------HH-hhc--cCCCh
Confidence 35789999998 877522 12279999998877654100 00 000 11111
Q ss_pred -HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecC-----CHHHHHHHHH-HcCc
Q 001990 425 -ALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA-----DAHAIASAAY-KIEM 497 (985)
Q Consensus 425 -~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~-----~~~~l~~~L~-~~Gi 497 (985)
...++.++ +.. +.+.++++.++..++.+++.+.|+++| +++.......-+.+..+ ...++.++|. ++||
T Consensus 272 ~~~~a~~~~--l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi 347 (386)
T 1u08_A 272 PAQLALADM--LRA-EPEHYLALPDFYRQKRDILVNALNESR-LEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGV 347 (386)
T ss_dssp HHHHHHHHH--HHH-CTHHHHTHHHHHHHHHHHHHHHTTSSS-CEECCCCBSSEEEEECTTTCCSCHHHHHHHHHHHSCE
T ss_pred HHHHHHHHH--HhC-CcHHHHHHHHHHHHHHHHHHHHHHHCC-CeecCCCceEEEEEecCCCCCCCHHHHHHHHHHhCCE
Confidence 11222222 232 356788899999999999999999986 88764321112344443 2678888886 6799
Q ss_pred eeeee--------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 498 NLRVV--------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 498 ~~~~~--------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.+... .++.+|++++ +++++|+++++.|..
T Consensus 348 ~v~~g~~f~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 348 AAIPLSVFCADPFPHKLIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp ECEEGGGGCSSCCCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred EEeCchHhCCCCCCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence 87532 2468999997 489999999999863
No 300
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.67 E-value=4e-16 Score=181.26 Aligned_cols=291 Identities=12% Similarity=0.070 Sum_probs=172.2
Q ss_pred HHHHHHHHHh----CCCccceecChHHH-HHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcC---------
Q 001990 636 NLGEWLCTIT----GFDSFSLQPNAGAA-GEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCG--------- 701 (985)
Q Consensus 636 el~~~la~l~----G~~~~~~~~~sGa~-g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G--------- 701 (985)
++++.+++++ +.+...+++++|++ +. ..+ .... .++|+|+++.+.|..+...++..|
T Consensus 102 ~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al-~~l---~~l~-----~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~ 172 (432)
T 3ei9_A 102 PLRAAIAKTFYGGLGIGDDDVFVSDGAKCDI-SRL---QVMF-----GSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDV 172 (432)
T ss_dssp HHHHHHHHHHHTTTTCCGGGEEEESCHHHHH-HHH---HHHH-----CTTCCEEEEESCCTHHHHHHHHHTCSCCEETTT
T ss_pred HHHHHHHHHHHccCCCCcceEEECCChHHHH-HHH---HHHc-----CCCCEEEEeCCCCHHHHHHHHHcCCcccccccc
Confidence 4555555554 66665555544444 33 222 2222 367889999988877766666555
Q ss_pred ---cEEEEEeCCCCC--CCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc
Q 001990 702 ---MKIVSVGTDAKG--NINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ 773 (985)
Q Consensus 702 ---~~v~~v~~~~~g--~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~--~di~eI~~la~~~g~lliVD~a~~~~~ 773 (985)
.+++.++++.++ ..|++. .+++++|++++| |++|.+. +++++|+++|+++|+++++|++|....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~ 244 (432)
T 3ei9_A 173 QKYGNIEYMRCTPENGFFPDLST--------VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYM 244 (432)
T ss_dssp TEETTCEEEECCGGGTTSCCGGG--------CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGC
T ss_pred cccCceEEeccCcccCCcCChhh--------CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhc
Confidence 367888886542 344332 267889999999 5789875 258888888999999999999986321
Q ss_pred cC-CC-C----CCcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccc
Q 001990 774 VG-LT-S----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPW 847 (985)
Q Consensus 774 ~g-~~-~----~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~ 847 (985)
.+ .. . ++..+.++++.|++|+|+. .|.++|++++++++...-......... ......+.+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~----~G~r~G~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~----- 311 (432)
T 3ei9_A 245 SDDNPRSIFEIPGAEEVAMETASFSNYAGF----TGVRLGWTVIPKKLLYSDGFPVAKDFN----RIICTCFNGA----- 311 (432)
T ss_dssp CSSCCSSGGGSTTGGGTEEEEEESHHHHCT----TTTCCEEEECCTTCBCTTSCBHHHHHH----HHHHHSCCCS-----
T ss_pred cCCCCCChhhcCCCCCeEEEEecchhccCC----cccceEEEEEChHHhhcchHHHHHHHH----HHhccccCCC-----
Confidence 11 00 0 1122456889999999954 467899999987762110000000000 0000001111
Q ss_pred hhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHH
Q 001990 848 GSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKR 926 (985)
Q Consensus 848 g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~ 926 (985)
+.....++.+++...+.+.+.+..++..++++++.+.|++ ++.+.. +..+. + +.++++ +.+..++.+.
T Consensus 312 -~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~-~--~~~~~~------~~~~~~~~~~ 380 (432)
T 3ei9_A 312 -SNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLGYDVYG-GKNAP-Y--VWVHFP------NQSSWDVFAE 380 (432)
T ss_dssp -CHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE-CSSSS-E--EEEECT------TSCHHHHHHH
T ss_pred -CHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCCceecC-CCcce-E--EEEECC------CCCHHHHHHH
Confidence 1111222223332222334566667778888999999987 555432 11122 2 345554 4567788888
Q ss_pred HHHC-CCccCCCC-C-C-CCCEEEEeccCCCCHHhhchHHHHHHHHHHHH
Q 001990 927 LMDY-GFHGPTMS-W-P-VPGTLMIEPTESESKVCHNREDLFFQILLSLT 972 (985)
Q Consensus 927 L~e~-Gi~~~~~~-~-p-v~~~lris~t~~~t~eeId~~~~~i~aL~~i~ 972 (985)
|.++ ||.+.... + + ..+.+|+++ ..++++|+ ++++.|++-.
T Consensus 381 ll~~~gv~v~~g~~f~~~~~~~iRis~--~~~~e~l~---~~l~rl~~~~ 425 (432)
T 3ei9_A 381 ILEKTHVVTTPGSGFGPGGEGFVRVSA--FGHRENIL---EACRRFKQLY 425 (432)
T ss_dssp HHHHHCEECEEGGGGCGGGTTEEEEEC--CSCHHHHH---HHHHHHHHHH
T ss_pred HHHHCCEEEeCchHhCCCCCCEEEEEe--cCCHHHHH---HHHHHHHHHh
Confidence 7764 99874321 1 1 257899996 56999999 8888887643
No 301
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.67 E-value=5.1e-16 Score=175.35 Aligned_cols=289 Identities=11% Similarity=0.099 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHH---HHHhcCcEEEEEeCC
Q 001990 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA---TAAMCGMKIVSVGTD 710 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~---~~~~~G~~v~~v~~~ 710 (985)
..++++++++++|.+.. +++++|+++++.++.++.. +| .++.|+++...|..... .....|++++.++.
T Consensus 49 ~~~l~~~la~~~~~~~~-i~~~~G~~a~~~al~~~~~----~g--d~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~- 120 (357)
T 3lws_A 49 IEPFEQKFADVLGMDDA-VFFPSGTMAQQVALRIWSD----ET--DNRTVAYHPLCHLEIHEQDGLKELHPIETILVGA- 120 (357)
T ss_dssp HHHHHHHHHHHHTCSEE-EEESCHHHHHHHHHHHHHH----HH--TCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSC-
T ss_pred HHHHHHHHHHHhCCCcE-EEecCcHHHHHHHHHHHhh----cC--CCcEEEecccceeeeeccchhhhccCcEEEEecC-
Confidence 55788999999998765 5557787776555444332 11 11267777765543222 24567999988885
Q ss_pred CCCCCCHHHHHHHHHhcCCCeEEEEEEcCC-Cc-cccc--cCHHHHHHHHHHcCCEEEEEcccccc-ccCCCCC-C--cC
Q 001990 711 AKGNINIEELRKAAEANRDNLSTLMVTYPS-TH-GVYE--EGIDEICKIIHDNGGQVYMDGANMNA-QVGLTSP-G--YI 782 (985)
Q Consensus 711 ~~g~iDle~L~~~i~~~~~~t~~Vvi~~pn-~~-G~i~--~di~eI~~la~~~g~lliVD~a~~~~-~~g~~~~-g--~~ 782 (985)
+++.+|+++|+++ .++++|++++|+ ++ |.+. .++++|+++|++||+++|+|++|... ......+ . ..
T Consensus 121 ~~~~~d~~~l~~~-----~~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~ 195 (357)
T 3lws_A 121 ADRLMTLDEIKAL-----PDIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAG 195 (357)
T ss_dssp TTSCCCHHHHHTC-----CSCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHT
T ss_pred CCCCcCHHHHhcC-----cCcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHh
Confidence 5678999999876 238899999995 55 8765 25999999999999999999987411 1111111 1 13
Q ss_pred CCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHH
Q 001990 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAM 862 (985)
Q Consensus 783 g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~ 862 (985)
++|+++.++||+|+ ||++|+++.++++++.+.... .. .+ ++..+. . ..+.++.+.+..
T Consensus 196 ~~d~~~~s~sK~~~------~~~gg~~~~~~~~~~~~~~~~-~~----------~~-~~~~~~---~-~~~~~~~~~l~~ 253 (357)
T 3lws_A 196 LFDSIYISFYKGLG------GIAGAILAGPAAFCQTARIWK-RR----------YG-GDLISL---Y-PYIVSADYYYEL 253 (357)
T ss_dssp TSSEEEEESSSTTC------CSSCEEEEECHHHHHHHHHHH-HH----------TT-CCCSCC---H-HHHHHHHHHHHH
T ss_pred cCCEEEEeccccCC------CCceEEEEcCHHHHHHHHHHH-HH----------hc-CCcccc---h-HHHHHHHHHHHH
Confidence 57999999999984 454488888877665432100 00 00 011110 1 111222233332
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHhccCCeeE-cCCCCceeEEEEEEecCccccCC-CCHHHHHHHHHHCCCccCCCCCC
Q 001990 863 MGSKGLTEASKIAILNANYMAKRLEKHYPILF-RGVNGTVAHEFIVDLRGLKNTAG-IEPEDVAKRLMDYGFHGPTMSWP 940 (985)
Q Consensus 863 lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~-~g~~~~~~~~~vv~~~~~~~~~g-~~~~~l~~~L~e~Gi~~~~~~~p 940 (985)
. .+..++..++++++.+.|++...+.+ ..+... +.+.++++. .+ .+..++.+.|.++||.+....++
T Consensus 254 ~-----~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~l~~~Gi~v~~g~~~ 322 (357)
T 3lws_A 254 R-----KDRMGQYYEQAKQLAEQFNALPGVHTTPEVPVS--NMFHLHFDG----QAADISPKLEQVQEETGLGFVGYLVD 322 (357)
T ss_dssp H-----TTCHHHHHHHHHHHHHHHHTSTTEEEESSSCSS--SEEEEEEES----CHHHHHHHHHHHHHHHCEESCSCCEE
T ss_pred H-----HHHHHHHHHHHHHHHHHHHhCCCCeeccCCCcc--eEEEEEecC----ChHHHHHHHHHHHHhcCeEEeccccc
Confidence 1 12233456678889999987433433 222122 234455541 00 12567889999999987643322
Q ss_pred CCC--EEEEeccCC---CCHHhhchHHHHHHHHHHH
Q 001990 941 VPG--TLMIEPTES---ESKVCHNREDLFFQILLSL 971 (985)
Q Consensus 941 v~~--~lris~t~~---~t~eeId~~~~~i~aL~~i 971 (985)
.++ .+|+++... .++++++ +.++.|.+.
T Consensus 323 ~~~~~~~r~~i~~~~~~~~~~~l~---~al~~l~~a 355 (357)
T 3lws_A 323 KDGYCSTEISVGDAYGELDQQTRD---AGFARLRQA 355 (357)
T ss_dssp CSSEEEEEEEBCTTGGGSCHHHHH---HHHHHHHHH
T ss_pred CCCceEEEEEecchhhhcCHHHHH---HHHHHHHHh
Confidence 234 789988754 4666676 666666543
No 302
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.67 E-value=8.6e-16 Score=177.22 Aligned_cols=303 Identities=12% Similarity=0.090 Sum_probs=176.2
Q ss_pred hcHHHHHHHHHHHHHHHhCC--Cccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCC-----EEEEc-CCCCCCcHHHHH
Q 001990 628 QGYQEMFNNLGEWLCTITGF--DSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRN-----VCIIP-VSAHGTNPATAA 698 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G~--~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~-----~Vlv~-~~~Hg~~~~~~~ 698 (985)
+|..++.+.+.+++.+.+|. +... +++++|++++..++.++. .+++ +||++ .+.|..+...+.
T Consensus 75 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~--------~~gd~~~~~~vi~~~~p~~~~~~~~~~ 146 (417)
T 3g7q_A 75 QGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFA--------GRRADGSTKKVLFPLAPEYIGYADSGL 146 (417)
T ss_dssp TSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS--------BC----CCBEEEESSCCCHHHHHC---
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHc--------CCCccCCcceEEEeCCCccccchhhcc
Confidence 56655555555565555554 4444 455666665543333321 2333 78887 653332222221
Q ss_pred ------hcCcEEEEEeCCC-CCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccC---HHHHHHHHHHcCCEEEEEc
Q 001990 699 ------MCGMKIVSVGTDA-KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG---IDEICKIIHDNGGQVYMDG 767 (985)
Q Consensus 699 ------~~G~~v~~v~~~~-~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~d---i~eI~~la~~~g~lliVD~ 767 (985)
..+..+..++.+. ++.+|+++|+ ++ +++++|++++| |++|.+. + +++|+++|+++|+++|+|+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~---~~~~~v~~~~p~NptG~~~-~~~~~~~l~~~a~~~~~~li~De 220 (417)
T 3g7q_A 147 EDDLFVSARPNIELLPEGQFKYHVDFEHLH--IG---EETGMICVSRPTNPTGNVI-TDEELMKLDRLANQHNIPLVIDN 220 (417)
T ss_dssp --CCEEECCCEEEEEGGGEEEEECCGGGCC--CC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCCEEEEC
T ss_pred chhhhccccCcccccCCcccccccCHHHhc--cc---cCceEEEECCCCCCCCCcc-CHHHHHHHHHHHHHcCCEEEEeC
Confidence 1244555555432 2468999988 54 78999999999 5799986 5 9999999999999999999
Q ss_pred cccccccCC----CCCCcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcc
Q 001990 768 ANMNAQVGL----TSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIA 843 (985)
Q Consensus 768 a~~~~~~g~----~~~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~ 843 (985)
++.....+. ..+...+.++++.|++| ++ .+|.++|++++++++.+.+...... . +.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK-~~----~~G~r~G~~~~~~~~~~~~~~~~~~------------~--~~~ 281 (417)
T 3g7q_A 221 AYGVPFPGIIFSEARPLWNPNIILCMSLSK-LG----LPGSRCGIIIANDKTITAIANMNGI------------I--SLA 281 (417)
T ss_dssp TTCTTTTCCBCSCCCCCCCTTEEEEEESGG-GT----CTTSCCEEEECCHHHHHHHHHHHHH------------H--CCC
T ss_pred CCccccccccccccccCCCCCEEEEEechh-cc----CCCcceEEEEeCHHHHHHHHHhhcc------------e--eeC
Confidence 985321111 11223466788999999 43 2467899999988776554211000 0 011
Q ss_pred cccchhhhHHHHHHHHHHHhchhh-HHH-HHHHHHHHHHHHHHHHhccC---CeeEcCCCCceeEEEEEEecCccccCCC
Q 001990 844 AAPWGSALILPISYTYIAMMGSKG-LTE-ASKIAILNANYMAKRLEKHY---PILFRGVNGTVAHEFIVDLRGLKNTAGI 918 (985)
Q Consensus 844 s~~~g~~~~~~~A~a~l~~lg~~g-l~~-~~~~~~~~a~~l~~~L~~~~---~i~~~g~~~~~~~~~vv~~~~~~~~~g~ 918 (985)
++ .....++.+++....... +.+ ..++..++.+++.+.|.+.+ .+.+..+.+.. .+.++++. .+.
T Consensus 282 ~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~--~~~~~~~~----~~~ 351 (417)
T 3g7q_A 282 PG----GMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAI--FLWLWFKD----LPI 351 (417)
T ss_dssp CC----SHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSS--EEEEECTT----CSS
T ss_pred CC----cHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcce--EEEEEcCC----CCC
Confidence 11 111222223333221111 111 23344556677777776521 23232222222 23455541 146
Q ss_pred CHHHHHHHHHHCCCccCCCC-C-C-C-------CCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHHHc
Q 001990 919 EPEDVAKRLMDYGFHGPTMS-W-P-V-------PGTLMIEPTESESKVCHNREDLFFQILLSLTKFTTFA 978 (985)
Q Consensus 919 ~~~~l~~~L~e~Gi~~~~~~-~-p-v-------~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~~~ 978 (985)
+..++.+.|.++||.+.... + + . ++.+|++++. +++||+ ++++.|+++++++.+.
T Consensus 352 ~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~~~~i~---~~~~~l~~~l~~~~~~ 416 (417)
T 3g7q_A 352 TTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--EPDKIE---AGVKILAEEIERAWRE 416 (417)
T ss_dssp CHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--CHHHHH---HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC--CHHHHH---HHHHHHHHHHHHHHhc
Confidence 78899999999999874321 1 1 1 4689999985 999999 9999999998877643
No 303
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.67 E-value=1.8e-15 Score=170.39 Aligned_cols=276 Identities=14% Similarity=0.175 Sum_probs=177.6
Q ss_pred HHHHHHHHHhCCCccceec-ChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeC-CCCC
Q 001990 636 NLGEWLCTITGFDSFSLQP-NAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT-DAKG 713 (985)
Q Consensus 636 el~~~la~l~G~~~~~~~~-~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~-~~~g 713 (985)
++++++++++|.+...+.+ ++|++++. ++++.+ . +++|+++.+.|..+...++..|++++.+|. ++++
T Consensus 54 ~lr~~la~~~~~~~~~i~~t~g~~~al~---~~~~~l------~-gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~ 123 (350)
T 3fkd_A 54 TLRQMLAKRNSVDNNAILVTNGPTAAFY---QIAQAF------R-GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDIG 123 (350)
T ss_dssp HHHHHHHHHTTCCGGGEEEESHHHHHHH---HHHHHT------T-TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCGG
T ss_pred HHHHHHHHHhCcCHHHEEEcCCHHHHHH---HHHHHH------C-CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCccc
Confidence 6889999999987655444 55554443 333332 2 678999888776666667889999999998 6544
Q ss_pred CCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcC-CEEEEEcccccccc-CCC---CCCcCCCcEE
Q 001990 714 NINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNG-GQVYMDGANMNAQV-GLT---SPGYIGADVC 787 (985)
Q Consensus 714 ~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g-~lliVD~a~~~~~~-g~~---~~g~~g~Di~ 787 (985)
.+++ +++++|++++| |++|.+. |+++|.++++.++ .++++|+++..... +.. .....+.+++
T Consensus 124 ~~~~-----------~~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~ 191 (350)
T 3fkd_A 124 EADF-----------SNMDFCWLCNPNNPDGRLL-QRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVM 191 (350)
T ss_dssp GSCC-----------TTCSEEEEESSCTTTCCCC-CHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEE
T ss_pred cCcc-----------CCCCEEEEeCCCCCcCCCC-CHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEE
Confidence 4443 46788999999 5799998 7999999998876 79999999842111 100 0112345688
Q ss_pred EeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhchhh
Q 001990 788 HLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKG 867 (985)
Q Consensus 788 ~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~g 867 (985)
+.|++|+|+. .|.++|++++++++.+.+.... .+.+. +.....++.+++.... .
T Consensus 192 ~~S~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~--------------~~~~~------~~~~~~~~~~~l~~~~--~ 245 (350)
T 3fkd_A 192 VYSFSHAYGI----PGLRIGYIVANKDFMKRVAAFS--------------TPWAV------NALAIEAAKFILIHPA--Q 245 (350)
T ss_dssp EEESHHHHSC----GGGCCEEEECCHHHHHHHHTTC--------------CTTCS------CHHHHHHHHHHHHCTT--T
T ss_pred EecCchhccC----cchheEeEEeCHHHHHHHHHhC--------------CCCCC------CHHHHHHHHHHHhCHH--H
Confidence 8999999954 3667899999887765543210 00111 1122222333343221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHH-CCCccCCCC-CC--CCC
Q 001990 868 LTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMD-YGFHGPTMS-WP--VPG 943 (985)
Q Consensus 868 l~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e-~Gi~~~~~~-~p--v~~ 943 (985)
+.+..++..++++++.+.|++...+.+..+.+. .+.+.++. + +..++.+.|.+ +||.+.... ++ .++
T Consensus 246 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---~~~~~~~~-----~-~~~~l~~~L~~~~gi~v~~g~~f~~~~~~ 316 (350)
T 3fkd_A 246 FTLPIRKWQRNTVDFITALNRLDGVEVHPSGTT---FFLLRLKK-----G-TAAELKKYMLEEYNMLIRDASNFRGLDES 316 (350)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHSTTEEECCCSSS---EEEEEESS-----S-CHHHHHHHHHHTTCEECEECTTSTTCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcEECCCCCc---EEEEECCC-----C-CHHHHHHHHHHHCCEEEEeCccCCCCCCC
Confidence 222223334778889998876323333222222 23355541 2 78899999998 899875322 22 257
Q ss_pred EEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 944 TLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 944 ~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
.+|++++ +++|+| +++++|+++.++
T Consensus 317 ~iRis~~---~~~~~~---~l~~al~~~~~~ 341 (350)
T 3fkd_A 317 YVRITTQ---RPAQNQ---LFIKALETFLEK 341 (350)
T ss_dssp EEEEECC---CHHHHH---HHHHHHHHHHTC
T ss_pred EEEEEcC---CHHHHH---HHHHHHHHHHHH
Confidence 8999984 889999 999999988764
No 304
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.67 E-value=1.3e-15 Score=173.70 Aligned_cols=158 Identities=16% Similarity=0.150 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHhCCC--ccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHH---HHHhcCcEEEEEe
Q 001990 634 FNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA---TAAMCGMKIVSVG 708 (985)
Q Consensus 634 ~~el~~~la~l~G~~--~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~---~~~~~G~~v~~v~ 708 (985)
..++++.+++++|.+ ...+++++|++++..+ ++.+ ++++||++...|+.+.. .++..|++++.+
T Consensus 60 ~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~---~~~~-------~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v- 128 (374)
T 2aeu_A 60 AEKVNEYGLKHLGGDENDKCVGFNRTSSAILAT---ILAL-------KPKKVIHYLPELPGHPSIERSCKIVNAKYFES- 128 (374)
T ss_dssp HHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH---HHHH-------CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE-
T ss_pred HHHHHHHHHHHhCCCCcceEEEEcChHHHHHHH---HHhC-------CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe-
Confidence 356777788999983 3346677887766443 3332 45789998876554433 466789999888
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCeEE-EEEEcCC-Ccc-ccccCHHHHHHHHHHcCCEEEEEcccccccc-CCCC--CCcC
Q 001990 709 TDAKGNINIEELRKAAEANRDNLST-LMVTYPS-THG-VYEEGIDEICKIIHDNGGQVYMDGANMNAQV-GLTS--PGYI 782 (985)
Q Consensus 709 ~~~~g~iDle~L~~~i~~~~~~t~~-Vvi~~pn-~~G-~i~~di~eI~~la~~~g~lliVD~a~~~~~~-g~~~--~g~~ 782 (985)
.|+++|+++ + +++++ |++++|| ++| ... |+++|+++|+++|+++++|+++..... .... +..+
T Consensus 129 ------~d~~~l~~~-~---~~~~~~v~~~~p~nptG~~~~-~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~ 197 (374)
T 2aeu_A 129 ------DKVGEILNK-I---DKDTLVIITGSTMDLKVIELE-NFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKL 197 (374)
T ss_dssp ------SCHHHHHTT-C---CTTEEEEEECBCTTSCBCCHH-HHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHH
T ss_pred ------CCHHHHHhc-C---CCccEEEEEccCCCCCCCCcc-cHHHHHHHHHHcCCEEEEECCcccccccccccCCcccc
Confidence 289999887 5 78999 8888884 688 666 899999999999999999998854321 1111 3346
Q ss_pred CCcEEEeCCcccccccCCCCCCcceeeeecccccCcC
Q 001990 783 GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFL 819 (985)
Q Consensus 783 g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~l 819 (985)
++|+++.|+||++ +||++|++++++++++.+
T Consensus 198 ~~di~~~S~sK~l------~g~~~G~~~~~~~~~~~l 228 (374)
T 2aeu_A 198 GADLVVTSTDKLM------EGPRGGLLAGKKELVDKI 228 (374)
T ss_dssp TCSEEEEETTSSS------SSCSCEEEEEEHHHHHHH
T ss_pred CCcEEEecCcccc------cCcceEEEEECHHHHHHH
Confidence 7899999999986 468899999998776544
No 305
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.67 E-value=2.6e-15 Score=176.21 Aligned_cols=306 Identities=17% Similarity=0.191 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCE---EEEcCCCC-CCcHHHHHhcCcEEEEEeC
Q 001990 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNV---CIIPVSAH-GTNPATAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~---Vlv~~~~H-g~~~~~~~~~G~~v~~v~~ 709 (985)
..++++++++++|.+. .+++++|+++++.++.+++.+... ++++ ||++ ..| +.+...+...|.+++.++.
T Consensus 78 ~~~l~~~la~~~~~~~-v~~t~ggt~A~~~al~~~~~~~~~----~Gd~~~~viv~-~~~~~~~~~~~~~~g~~~~~~~~ 151 (467)
T 1ax4_A 78 YYDLKDKAKELFNYDY-IIPAHQGRGAENILFPVLLKYKQK----EGKAKNPVFIS-NFHFDTTAAHVELNGCKAINIVT 151 (467)
T ss_dssp HHHHHHHHHHHHCCCE-EEEESSHHHHHHHHHHHHHHHHHH----TTCCSSCEEEE-SSCCHHHHHHHHHTTCEEEECBC
T ss_pred HHHHHHHHHHHcCCCc-EEEcCCcHHHHHHHHHHHHHhhcc----CCCccceEEEe-ccccchhhHHHhccCCceecccc
Confidence 4578899999999864 366778888887776666543211 3455 8887 445 3434456778998887654
Q ss_pred C----------CCCCCCHHHHHHHHHhcC-CCeEEEEEEcC-CCc-cccc--cCHHHHHHHHHHcCCEEEEEccccc---
Q 001990 710 D----------AKGNINIEELRKAAEANR-DNLSTLMVTYP-STH-GVYE--EGIDEICKIIHDNGGQVYMDGANMN--- 771 (985)
Q Consensus 710 ~----------~~g~iDle~L~~~i~~~~-~~t~~Vvi~~p-n~~-G~i~--~di~eI~~la~~~g~lliVD~a~~~--- 771 (985)
+ .++.+|+++|++++++++ +++++|++++| |++ |.+. .++++|+++|++||+++|+|++|..
T Consensus 152 ~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~ 231 (467)
T 1ax4_A 152 EKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENA 231 (467)
T ss_dssp GGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHH
T ss_pred cccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcc
Confidence 2 146789999999998432 37999999988 466 6653 2589999999999999999998753
Q ss_pred --------cccCCCCCCc------CCCcEEEeCCcccccccCCCCCCcceeeeec-c-cccCcCCCCccccCCCCCCCCC
Q 001990 772 --------AQVGLTSPGY------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVK-K-HLAPFLPSHPVVSTGGIPAPEK 835 (985)
Q Consensus 772 --------~~~g~~~~g~------~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~-~-~l~~~lpg~~~g~~~~~~~~~~ 835 (985)
+..+. .+.. ..+|++++++||+++. |.+|+++.+ + ++.+.+........+. .
T Consensus 232 ~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~s~sK~~g~------~~Gg~~~~~d~~~l~~~~~~~~~~~~~~-----~ 299 (467)
T 1ax4_A 232 YFIKARDPKYKNA-TIKEVIFDMYKYADALTMSAKKDPLL------NIGGLVAIRDNEEIFTLARQRCVPMEGF-----V 299 (467)
T ss_dssp HHHHHHCGGGTTC-CHHHHHHHHGGGCSEEEEETTSTTCC------SSCEEEEESSCHHHHHHHHHHHHHHTCS-----T
T ss_pred hhccccccccCCC-chhhhhhhhccccceEEEeccccCCC------CcceEEEeCCHHHHHHHHHhhccccccc-----c
Confidence 11121 1111 2478999999998853 323677777 5 5544321000000000 0
Q ss_pred CCCCCCcccccchhhhH-HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCc-
Q 001990 836 SQPLGTIAAAPWGSALI-LPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGL- 912 (985)
Q Consensus 836 ~~~t~~i~s~~~g~~~~-~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~- 912 (985)
..++ .... +.+....+..+.++ +..++..++++++.+.|++ ++.+. .+.+.. .+.+++..+
T Consensus 300 ~~~~---------~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~~~--~~~~~~~~~~ 363 (467)
T 1ax4_A 300 TYGG---------LAGRDMAAMVQGLEEGTEE---EYLHYRIGQVKYLGDRLREAGIPIQ--YPTGGH--AVFVDCKKLV 363 (467)
T ss_dssp TTTT---------CCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHHHTTCCBC--SSCCSS--EEEEESTTTC
T ss_pred ccCC---------ccchHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHhCCCCcc--cCCCce--EEEEehhhhc
Confidence 0010 1111 11111123322221 1223334667888898876 44432 221221 233441100
Q ss_pred --cccCCCCHHHHHHHH-HHCCCccCCC-C-----CC--------CCCEEEEeccC-CCCHHhhchHHHHHHHHHHHHHH
Q 001990 913 --KNTAGIEPEDVAKRL-MDYGFHGPTM-S-----WP--------VPGTLMIEPTE-SESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 913 --~~~~g~~~~~l~~~L-~e~Gi~~~~~-~-----~p--------v~~~lris~t~-~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
....+.+..++.+.| .++||.+... . .| ..+.+|++++. .+|++|+| +++++|++++++
T Consensus 364 ~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~---~~~~~l~~~~~~ 440 (467)
T 1ax4_A 364 PQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMD---YIADALIGLKEK 440 (467)
T ss_dssp TTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHH---HHHHHHHTTHHH
T ss_pred cccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHH---HHHHHHHHHHHh
Confidence 000124567899999 8899987431 0 01 12789999984 48999999 999999998877
Q ss_pred HH
Q 001990 975 TT 976 (985)
Q Consensus 975 ~~ 976 (985)
.+
T Consensus 441 ~~ 442 (467)
T 1ax4_A 441 FA 442 (467)
T ss_dssp HT
T ss_pred hh
Confidence 54
No 306
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.67 E-value=1.2e-14 Score=165.83 Aligned_cols=273 Identities=11% Similarity=0.084 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHhhC--CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch
Q 001990 212 SLLNFQTMIADLTG--LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK 289 (985)
Q Consensus 212 ~i~e~q~~ia~L~g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~~ 289 (985)
...++++.+++++| .+..++.+++|+|.++++++.++. ++||+|+++...|+++...++. .|.+++.++.+
T Consensus 72 ~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~---~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~~~~~ 144 (391)
T 4dq6_A 72 YNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELT---KANDKIMIQEPVYSPFNSVVKN----NNRELIISPLQ 144 (391)
T ss_dssp HHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS---CTTCEEEECSSCCTHHHHHHHH----TTCEEEECCCE
T ss_pred HHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhC---CCCCEEEEcCCCCHHHHHHHHH----cCCeEEeeeee
Confidence 34556678899999 667789899999998888776652 2789999999999998887653 57787776543
Q ss_pred ------------hhhc-cCCCEeEEEEEcC-CCCeee---ccHHHHHHHHHhCCcEEEEEeccccccCCC-----CCCcc
Q 001990 290 ------------DIDY-KSGDVCGVLVQYP-GTEGEV---LDYGDFIKNAHANGVKVVMATDLLALTILK-----PPGEL 347 (985)
Q Consensus 290 ------------~l~~-l~~~t~~V~v~~p-n~~G~i---~dl~~I~~~a~~~galliV~a~~~alg~l~-----~p~~~ 347 (985)
++++ +.+ +++|++.+| |.+|.+ +++++|+++|+++|+++++|. ..+..... +...+
T Consensus 145 ~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~g~~~~~~~~~ 222 (391)
T 4dq6_A 145 KLENGNYIMDYEDIENKIKD-VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDE-IHSDIILKKHKHIPMASI 222 (391)
T ss_dssp ECTTSCEECCHHHHHHHCTT-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEEC-TTTTCBCTTCCCCCGGGS
T ss_pred ecCCCceEeeHHHHHHHhhc-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeec-cccccccCCCCccCHHHc
Confidence 4555 666 999999998 679999 789999999999999999952 33322111 11233
Q ss_pred c-----ceEEEecC-ccccccCCCCCCceEEEEEch-hhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCc
Q 001990 348 G-----ADIVVGSA-QRFGVPMGYGGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNI 420 (985)
Q Consensus 348 G-----aDi~v~s~-k~lg~P~~~GGP~~G~l~~~~-~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni 420 (985)
+ .+++++|. |.++.| |..+|++.+++ ++.+.+... ++...+.+.
T Consensus 223 ~~~~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~ 273 (391)
T 4dq6_A 223 SKEFEKNTITCMAPTKTFNIA----GLQSSYVVLPDEKDYKLLDDA-------------------------FTRIDIKRN 273 (391)
T ss_dssp CHHHHHTEEEEECSHHHHTCG----GGCCEEEECCSHHHHHHHHHH-------------------------HHHTTCCCC
T ss_pred CccccCcEEEEEechhhccCc----ccceEEEEeCCHHHHHHHHHH-------------------------HHhhcCCCC
Confidence 3 33888887 888643 33468888775 665544100 000011111
Q ss_pred cchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhc-CCCEEEcCCCCcceEEEecC--C--HHHHHHHHHHc
Q 001990 421 CTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQGLPFFDTVKVKCA--D--AHAIASAAYKI 495 (985)
Q Consensus 421 ~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~~~~~~~~~~i~~~--~--~~~l~~~L~~~ 495 (985)
+.....+..+++ . .+.+.++++.++..++.+++.+.|++ ++++++......-.+.+.++ + ..++.++|.++
T Consensus 274 -~~~~~~a~~~~l--~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 349 (391)
T 4dq6_A 274 -NCFSLVATEASY--N-NGESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEGTYLLWVDFSALGLSDEELESILVQK 349 (391)
T ss_dssp -CHHHHHHHHHHH--H-HCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCSBSSEEEEECGGGCCCHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHH--h-chHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCCccEEEEEEhhhcCCCHHHHHHHHHHh
Confidence 011222222222 2 23445788889999999999999988 54488764321111224433 2 88999999998
Q ss_pred -Cceeeee------cCCeEEEEeccCCCHHHHHHHHHHHh
Q 001990 496 -EMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 496 -Gi~~~~~------~~~~lris~~~~~t~edid~ll~~l~ 528 (985)
||.++.. .++.+|++++ +++++++++++.|.
T Consensus 350 ~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~ 387 (391)
T 4dq6_A 350 GKVALNQGNSFGIGGSGYQRINLA--CPRSMLEEALIRIK 387 (391)
T ss_dssp TCEECEEGGGGCTTCTTEEEEECC--SCHHHHHHHHHHHH
T ss_pred CCEEeeCchhhCCCCCCeEEEEEc--CCHHHHHHHHHHHH
Confidence 9988542 2488999998 68999999999886
No 307
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.66 E-value=8.7e-16 Score=179.98 Aligned_cols=163 Identities=19% Similarity=0.210 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHH----HHhcCcEEEEEe
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT----AAMCGMKIVSVG 708 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~----~~~~G~~v~~v~ 708 (985)
...++++++++++|.+. .+++++|++++.++ ++ . ..++++||++...|+.+... ++..|++++.++
T Consensus 134 ~~~~l~~~la~~~g~~~-~i~~~sGt~al~~~---l~-~-----~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~ 203 (464)
T 1ibj_A 134 TRDALESLLAKLDKADR-AFCFTSGMAALSAV---TH-L-----IKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVN 203 (464)
T ss_dssp HHHHHHHHHHHHHTCSE-EEEESSHHHHHHHH---HT-T-----SCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEEC
T ss_pred HHHHHHHHHHHHhCCCe-EEEECCHHHHHHHH---HH-H-----hCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeC
Confidence 46789999999999874 45667777655322 22 1 14678999998877655432 356799999998
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCCCcEE
Q 001990 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 709 ~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g~Di~ 787 (985)
.+ |+++|+++++ +++++|++++| |++|.+. |+++|+++|+++|+++++|++|..+. ...+..+++|++
T Consensus 204 ~~-----d~~~l~~~i~---~~tk~v~l~~p~NptG~v~-~l~~i~~la~~~gi~livDea~~~g~--~~~~~~~~~div 272 (464)
T 1ibj_A 204 TT-----KLDEVAAAIG---PQTKLVWLESPTNPRQQIS-DIRKISEMAHAQGALVLVDNSIMSPV--LSRPLELGADIV 272 (464)
T ss_dssp TT-----SHHHHHHHCC---SSEEEEEECSSCTTTCCCC-CHHHHHHHHHTTTCEEEEECTTTCTT--TCCGGGTTCSEE
T ss_pred CC-----CHHHHHHHhc---cCceEEEEeCCCCCCCEee-cHHHHHHHHHHcCCEEEEECCCcccc--cCChhhcCCEEE
Confidence 74 8999999997 78999999999 5799998 89999999999999999999986432 223445789999
Q ss_pred EeCCcccccccCCCCCCcceeeeecc-cccCcC
Q 001990 788 HLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFL 819 (985)
Q Consensus 788 ~~s~hKtl~~p~g~GGPg~G~l~~~~-~l~~~l 819 (985)
+.|+||+|+.| +|..+|++++++ ++.+.+
T Consensus 273 ~~S~sK~~~g~---~Gl~~G~l~~~~~~l~~~l 302 (464)
T 1ibj_A 273 MHSATKFIAGH---SDVMAGVLAVKGEKLAKEV 302 (464)
T ss_dssp EEETTTTTTCS---SCCCCEEEEECSHHHHHHH
T ss_pred EECCcccccCC---CCCcEEEEEEChHHHHHHH
Confidence 99999998532 233458999885 555443
No 308
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.66 E-value=1.4e-14 Score=164.52 Aligned_cols=265 Identities=12% Similarity=0.025 Sum_probs=183.3
Q ss_pred HHHHHHHHh------hCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001990 215 NFQTMIADL------TGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 215 e~q~~ia~L------~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~ 288 (985)
++++.+|++ ++.++.++.+++|+++++++++.++. . +||+|++++..|+++...++. .|.+++.++.
T Consensus 73 ~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~-~--~gd~Vl~~~~~y~~~~~~~~~----~g~~~~~v~~ 145 (369)
T 3cq5_A 73 ELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFG-G--PGRTALGFQPSYSMHPILAKG----THTEFIAVSR 145 (369)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHC-S--TTCEEEEEESSCTHHHHHHHH----TTCEEEEEEC
T ss_pred HHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhc-C--CCCEEEEcCCChHHHHHHHHH----cCCEEEEecC
Confidence 455677776 45666788888999988887776652 2 789999999999998877643 5777777653
Q ss_pred --------hhhhc-cCC-CEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCC-C----CCccc-ceE
Q 001990 289 --------KDIDY-KSG-DVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-P----PGELG-ADI 351 (985)
Q Consensus 289 --------~~l~~-l~~-~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~-~----p~~~G-aDi 351 (985)
+++++ +++ ++++|++.+| |++|.+.|++++.++++.+++++++| +..+.+... + ...++ .++
T Consensus 146 ~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~D-e~~~~~~~~~~~~~~~~~~~~~~i 224 (369)
T 3cq5_A 146 GADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVD-EAYAEFSPSPSATTLLEKYPTKLV 224 (369)
T ss_dssp CTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEE-CTTGGGCCSCCGGGGTTTCTTTEE
T ss_pred CcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEE-CCchhhcCCcchHHHHhhCCCCEE
Confidence 34555 555 7899999888 67999999999999999999988885 333332221 1 13456 778
Q ss_pred EEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHH
Q 001990 352 VVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANM 430 (985)
Q Consensus 352 ~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~ 430 (985)
+++|. |.|+.| |..+|++++++++++.+... .. + +..+.....+..
T Consensus 225 ~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~~~----------~~------------------~-~~~~~~~~~a~~ 271 (369)
T 3cq5_A 225 VSRTMSKAFDFA----GGRLGYFVANPAFIDAVMLV----------RL------------------P-YHLSALSQAAAI 271 (369)
T ss_dssp EEEESSSTTSCG----GGCCEEEEECTHHHHHHHTT----------SC------------------T-TCSCHHHHHHHH
T ss_pred EEEechHhcCCc----ccceEEEEeCHHHHHHHHHc----------CC------------------C-CCCCHHHHHHHH
Confidence 89987 877533 23469999998876654110 00 0 001111221222
Q ss_pred HHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecCC-HHHHHHHHHHcCceeeee-cCCeEE
Q 001990 431 AAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD-AHAIASAAYKIEMNLRVV-DSNTVT 508 (985)
Q Consensus 431 aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~-~~~l~~~L~~~Gi~~~~~-~~~~lr 508 (985)
++ +. ..+.++++.++..++.+++.+.|++.| +++... ...-+.+..+. ..++.+.|.++||.+... .++.+|
T Consensus 272 ~~--l~--~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~iR 345 (369)
T 3cq5_A 272 VA--LR--HSADTLGTVEKLSVERVRVAARLEELG-YAVVPS-ESNFVFFGDFSDQHAAWQAFLDRGVLIRDVGIAGHLR 345 (369)
T ss_dssp HH--HH--THHHHHTHHHHHHHHHHHHHHHHHHHT-CEEECC-SSSEEEEECCSSHHHHHHHHHHTTEECBCCSCTTEEE
T ss_pred HH--hc--CHHHHHHHHHHHHHHHHHHHHHHHhCC-CEECCC-CCeEEEEECCCCHHHHHHHHHHCCEEEEECCCCCeEE
Confidence 22 12 234577888889999999999998876 877632 22234455553 788999999999988654 257899
Q ss_pred EEeccCCCHHHHHHHHHHHhC
Q 001990 509 ASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 509 is~~~~~t~edid~ll~~l~~ 529 (985)
++++ +++|+++++++|..
T Consensus 346 is~~---~~~~i~~~~~~l~~ 363 (369)
T 3cq5_A 346 TTIG---VPEENDAFLDAAAE 363 (369)
T ss_dssp EECC---CHHHHHHHHHHHHH
T ss_pred EEeC---CHHHHHHHHHHHHH
Confidence 9998 79999999999873
No 309
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.66 E-value=3.5e-15 Score=169.43 Aligned_cols=277 Identities=13% Similarity=0.140 Sum_probs=187.4
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~---- 288 (985)
..++++.+|+++|.+ ++.++++||.++++++.+++.. +||+|+++...|+++...++. .|++++.++.
T Consensus 37 ~~~l~~~la~~~~~~--~~~~~~sGt~al~~al~~~~~~--~gd~Vi~~~~~~~~~~~~~~~----~G~~~~~~~~~~~~ 108 (367)
T 3nyt_A 37 VTELEDRLADFVGAK--YCISCANGTDALQIVQMALGVG--PGDEVITPGFTYVATAETVAL----LGAKPVYVDIDPRT 108 (367)
T ss_dssp HHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTCC--TTCEEEEESSSCTHHHHHHHH----TTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhCCC--CcCEEEECCCccHHHHHHHHH----cCCEEEEEecCCcc
Confidence 557889999999987 4778899999988887776433 889999999999999888753 5888888754
Q ss_pred -----hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCC---CCcccceEEEec---C
Q 001990 289 -----KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP---PGELGADIVVGS---A 356 (985)
Q Consensus 289 -----~~l~~-l~~~t~~V~v~~pn~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~---p~~~GaDi~v~s---~ 356 (985)
+++++ +++++++|+++ |.+|.+.|+++|.++|+++|+++++|+ ..+.|.... .+.+| |+++.| .
T Consensus 109 ~~~d~~~l~~~i~~~~~~v~~~--~~~G~~~~~~~i~~la~~~~~~li~D~-a~~~g~~~~~~~~~~~~-di~~~Sf~~~ 184 (367)
T 3nyt_A 109 YNLDPQLLEAAITPRTKAIIPV--SLYGQCADFDAINAIASKYGIPVIEDA-AQSFGASYKGKRSCNLS-TVACTSFFPS 184 (367)
T ss_dssp CSBCGGGTGGGCCTTEEEECCB--CGGGCCCCHHHHHHHHHHTTCCBEEEC-TTTTTCEETTEETTSSS-SEEEEECCTT
T ss_pred CCcCHHHHHHhcCcCCcEEEee--CCccChhhHHHHHHHHHHcCCEEEEEC-ccccCCeECCeeccCCC-CEEEEECCCC
Confidence 34555 77899988844 468999999999999999999999953 445544322 23444 999998 3
Q ss_pred ccccccCCCCCCceEEEEEc-hhhHhcCCCce-eeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHH
Q 001990 357 QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRI-VGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY 434 (985)
Q Consensus 357 k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~-vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y 434 (985)
|.++.+ + ..|++.++ +++.+.+.... .|.. ..|.. ...|...- . ..+ .+++.
T Consensus 185 K~l~~~-g----~gg~~~~~~~~l~~~~~~~~~~g~~------~~~~~----------~~~g~~~~-~-~~~---~aa~~ 238 (367)
T 3nyt_A 185 APLGCY-G----DGGAIFTNDDELATAIRQIARHGQD------RRYHH----------IRVGVNSR-L-DTL---QAAIL 238 (367)
T ss_dssp SSSCCS-S----CCEEEEESCHHHHHHHHHHTBTTEE------ETTEE----------CSCCCBCC-C-CHH---HHHHH
T ss_pred CcCCCc-C----ceeEEEeCCHHHHHHHHHHHhcCCC------cCcee----------eccCcCCC-c-cHH---HHHHH
Confidence 777531 1 14677774 55655442110 1110 00100 00111111 1 122 12221
Q ss_pred HHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCC-----CCcceEEEecCCHHHHHHHHHHcCceeeeec------
Q 001990 435 AVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-----PFFDTVKVKCADAHAIASAAYKIEMNLRVVD------ 503 (985)
Q Consensus 435 ~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-----~~~~~~~i~~~~~~~l~~~L~~~Gi~~~~~~------ 503 (985)
+.. .+.++++.++..++++++++.|+++| +.+... ..+..+.+..++..++.+.|.++||.++...
T Consensus 239 ~~~--l~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~GI~~~~~~~~~~~~ 315 (367)
T 3nyt_A 239 LPK--LEIFEEEIALRQKVAAEYDLSLKQVG-IGTPFIEVNNISVYAQYTVRMDNRESVQASLKAAGVPTAVHYPIPLNK 315 (367)
T ss_dssp HHH--HHTHHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCTTEECCCSSEEEECSSHHHHHHHHHHHTCCCBCSCSSCGGG
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHhccCC-eeccCCCCCCceeeEEEEEEeCCHHHHHHHHHHCCCceeccCCCcccc
Confidence 122 23567788888999999999999986 665421 1223456665568889999999999664211
Q ss_pred ------------------CCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001990 504 ------------------SNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 504 ------------------~~~lris~~~~~t~edid~ll~~l~~~ 530 (985)
...++++++...|++|++++++++..-
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 316 QPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp SGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred ChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 246899999999999999999999865
No 310
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.66 E-value=4.9e-14 Score=159.42 Aligned_cols=338 Identities=17% Similarity=0.202 Sum_probs=214.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCccceec---CCCCCC-CCCcHHHHHHHH------hCCccccccCCChhh--Hhh
Q 001990 140 KFSKFDEGLTESQMIEHMQKLASMNKVYKSFI---GMGYYN-THVPPVILRNIM------ENPAWYTQYTPYQAE--IAQ 207 (985)
Q Consensus 140 ~lp~~~~~~se~e~~~~~~~~~~~n~~~~~~l---G~g~~~-~~~p~~v~~~i~------~~~~~~t~~~py~~e--~sq 207 (985)
.+| ..+.+|..+.-.+.+||.++. +||. |.|--- ...-+.|.+.-. .|++-+++-.|=.+. +..
T Consensus 40 ~~P--~~g~~d~~ie~~l~~la~mds--nn~~~~~g~GERE~Rv~s~lv~rrh~~~~HGiGRSGd~~~~QPKAaGssll~ 115 (501)
T 3hl2_A 40 KCP--ENGWDESTLELFLHELAIMDS--NNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLN 115 (501)
T ss_dssp CCC--SSCCCHHHHHHHHHHHHTTBG--GGCSSCCCCSSCCCCCSCHHHHHHTTTCCSCBSCSSCTTCCCTTBHHHHHHH
T ss_pred CCC--ccCCCHHHHHHHHHHHHhhcc--CCCcccCCcccchHHHHHHHHHhhccCcccCCCCccccccCCCCccchHHHH
Confidence 567 689999999999999998863 3333 444211 345555654322 344444544444443 111
Q ss_pred HHHHHHHHHHHHHHHhhCCCCc-ceeeccchHHHHHHHHHHhhhhcC-CCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001990 208 GRLESLLNFQTMIADLTGLPMS-NASLLDEGTAAAEAMAMCNNIQKG-KKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 208 g~l~~i~e~q~~ia~L~g~~~~-~~sl~~~~ta~~ea~~~a~~~~~~-~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~ 285 (985)
.-.+.+ .-.++..+ |++.. .+-+++++|++..+++|+..-.++ ++++||+++++|.|++..+.. .|++.++
T Consensus 116 ~ltn~l--~ld~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL----~Gl~Pv~ 188 (501)
T 3hl2_A 116 KITNSL--VLDIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMIT----AGFEPVV 188 (501)
T ss_dssp HHHHHH--HHHHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHH----TTCEEEE
T ss_pred HHHHHH--HHHHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHH----cCCeEEE
Confidence 111111 12455556 99864 455789999999998776431111 249999999999999999864 4888888
Q ss_pred eCc-----------hhhhc-c---CCCEeEEEEEcC-CCC-eeeccHHHHHHHHHhCCcEEEEEeccccccCCC------
Q 001990 286 SDL-----------KDIDY-K---SGDVCGVLVQYP-GTE-GEVLDYGDFIKNAHANGVKVVMATDLLALTILK------ 342 (985)
Q Consensus 286 ~~~-----------~~l~~-l---~~~t~~V~v~~p-n~~-G~i~dl~~I~~~a~~~galliV~a~~~alg~l~------ 342 (985)
+++ +++++ + +.+..++++++| ++. |.+.||++|+++||++|++++|+ + ++|.-.
T Consensus 189 V~p~~d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVD-e--AhGah~~~~~~l 265 (501)
T 3hl2_A 189 IENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVN-N--AYGVQSSKCMHL 265 (501)
T ss_dssp ECEEEETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEE-C--TTCTTCHHHHHH
T ss_pred EeeeecccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEe-C--cchhhhhhhhhh
Confidence 755 34554 4 223344444444 443 36689999999999999999995 2 333211
Q ss_pred --CCCccc-ceEEEecC-ccccccCCCCCCceEEEEEch-hhHhcCCCceeeeeecCCCCcceEEecccccccccccccC
Q 001990 343 --PPGELG-ADIVVGSA-QRFGVPMGYGGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKAT 417 (985)
Q Consensus 343 --~p~~~G-aDi~v~s~-k~lg~P~~~GGP~~G~l~~~~-~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~at 417 (985)
...++| ||+++.|. |.+..|.+ | |++++++ ++++++- ..-.| |.
T Consensus 266 p~sA~~~GrAD~vVqS~HK~llvpIG--G---~ii~~~d~e~l~~~~-------~~yPG----------------r~--- 314 (501)
T 3hl2_A 266 IQQGARVGRIDAFVQSLDKNFMVPVG--G---AIIAGFNDSFIQEIS-------KMYPG----------------RA--- 314 (501)
T ss_dssp HHHHHHHSCCCEEEEEHHHHHCCCSS--C---EEEEESCHHHHHHHH-------HTSCS----------------CB---
T ss_pred HHHHHhcCCCcEEEecccccceeecC--c---eEEEeCCHHHHHHHH-------HhCCC----------------CC---
Confidence 113468 99999999 77777753 3 4555553 4554430 00001 11
Q ss_pred CCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcC----CCEEEcCCCCc-ceEEEecC-------C-
Q 001990 418 SNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQGLPFF-DTVKVKCA-------D- 484 (985)
Q Consensus 418 sni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~-~~~~i~~~-------~- 484 (985)
|.++.+.+.+++ ..+|.+|++++.++..++++||+++|+++ | -++++.+.- -.+.+... .
T Consensus 315 ----S~Spsldl~~tL--L~lGr~Gy~~ll~e~~ela~~L~~~L~~la~~~g-e~ll~~~~n~is~a~tl~~~~~~~~~~ 387 (501)
T 3hl2_A 315 ----SASPSLDVLITL--LSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYN-ERLLHTPHNPISLAMTLKTLDEHRDKA 387 (501)
T ss_dssp ----CSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CCBCCCTTCSSEEEEECTTSCTTTSCH
T ss_pred ----CCcHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hhhcCCCCCceeEEEeccccccccccc
Confidence 114444444443 68899999999999999999999999985 4 455543311 13444332 1
Q ss_pred HHHHHHHHHHcCce----eee--------------------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 485 AHAIASAAYKIEMN----LRV--------------------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 ~~~l~~~L~~~Gi~----~~~--------------------~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
...+...|..++|- +.. .+...+.+......+++|+|.|++.|..
T Consensus 388 ~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~ 456 (501)
T 3hl2_A 388 VTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDR 456 (501)
T ss_dssp HHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 56788889888873 110 0125588888889999999999999974
No 311
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.66 E-value=1.3e-15 Score=178.37 Aligned_cols=300 Identities=15% Similarity=0.208 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCC-CCcHHHHHhcCcEEEEEeCCC-
Q 001990 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAH-GTNPATAAMCGMKIVSVGTDA- 711 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~H-g~~~~~~~~~G~~v~~v~~~~- 711 (985)
..++++.+++++|.+. .+++++|++++..++.++. .+++ |++...| +++...+...|++++.+++++
T Consensus 77 ~~~l~~~la~~~~~~~-~~~~~~gt~a~~~al~~l~--------~~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~ 145 (456)
T 2ez2_A 77 FYHLERTVQELFGFKH-IVPTHQGRGAENLLSQLAI--------KPGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEA 145 (456)
T ss_dssp HHHHHHHHHHHHCCSE-EEEESSHHHHHHHHHHHHC--------CTTC--EEEESSCCHHHHHHHHHTTCEEEECBCGGG
T ss_pred HHHHHHHHHHHhCCCc-EEEeCCcHHHHHHHHHHhC--------CCCC--EeccccccchhHHHHHHcCCEEEEeccccc
Confidence 5678899999999875 4667778877655544331 3566 5555555 666667788999999998863
Q ss_pred ---------CCCCCHHHHHHHHHhcC-CCeEEEEEEcC-C-Ccccccc--CHHHHHHHHHHcCCEEEEEccccccc----
Q 001990 712 ---------KGNINIEELRKAAEANR-DNLSTLMVTYP-S-THGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ---- 773 (985)
Q Consensus 712 ---------~g~iDle~L~~~i~~~~-~~t~~Vvi~~p-n-~~G~i~~--di~eI~~la~~~g~lliVD~a~~~~~---- 773 (985)
++.+|+++|++++++.. +++++|++++| | ++|.+.+ ++++|+++|+++|+++|+|++|..+.
T Consensus 146 ~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~ 225 (456)
T 2ez2_A 146 HDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFI 225 (456)
T ss_dssp GCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHH
T ss_pred ccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccc
Confidence 26789999999998321 23488999988 4 6898751 39999999999999999999986430
Q ss_pred ----cCCC-CCC-------cCCCcEEEeCCcccccccCCCCCCcceeeee-cccccCcCCCCccccCCCCCCCCCCCCCC
Q 001990 774 ----VGLT-SPG-------YIGADVCHLNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVSTGGIPAPEKSQPLG 840 (985)
Q Consensus 774 ----~g~~-~~g-------~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~-~~~l~~~lpg~~~g~~~~~~~~~~~~~t~ 840 (985)
..+. .+- ....|++++|+||+++ +|.+|++++ ++++.+.+........+ .. ...
T Consensus 226 ~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~------~~~gG~~~~~~~~~~~~~~~~~~~~~~------~~-~~~ 292 (456)
T 2ez2_A 226 KEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCL------VNIGGFLCMNDDEMFSSAKELVVVYEG------MP-SYG 292 (456)
T ss_dssp HHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC------CSSCEEEEESCHHHHHHHHHHHHHHTC------CT-TTT
T ss_pred cccccccCCcchhhhhhhhcccCCEEEEeCcccCC------CCceeEEEECCHHHHHHHHHHHhhccC------cc-ccc
Confidence 1111 110 1236999888888753 224688888 45554432110000000 00 000
Q ss_pred CcccccchhhhHHHH-HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCC
Q 001990 841 TIAAAPWGSALILPI-SYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGI 918 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~-A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~ 918 (985)
...+ . .+.+ +.+.+..+. .+..++...+.+++.+.|++ ++.+. .+.+.. .+.+++..+. .+.
T Consensus 293 ~~~~----~--~~~a~a~~~~~~~~----~~~~~~~~~~~~~l~~~L~~~g~~~~--~p~~~~--~~~~~~~~~~--~~~ 356 (456)
T 2ez2_A 293 GLAG----R--DMEAMAIGLREAMQ----YEYIEHRVKQVRYLGDKLKAAGVPIV--EPVGGH--AVFLDARRFC--EHL 356 (456)
T ss_dssp TCCH----H--HHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHHHHTTCCBC--SSCCSS--EEEEEHHHHT--TTS
T ss_pred Ccch----h--HHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHhcCCCccc--cCCCce--EEEEEhHHhc--CCC
Confidence 1110 1 1111 233333322 23344556677888888887 44432 221211 2334432000 022
Q ss_pred CHH-----HHHHHH-HHCCCcc-C--CCC-----------CCCCCEEEEeccCC-CCHHhhchHHHHHHHHHHHHHHHH
Q 001990 919 EPE-----DVAKRL-MDYGFHG-P--TMS-----------WPVPGTLMIEPTES-ESKVCHNREDLFFQILLSLTKFTT 976 (985)
Q Consensus 919 ~~~-----~l~~~L-~e~Gi~~-~--~~~-----------~pv~~~lris~t~~-~t~eeId~~~~~i~aL~~i~~~~~ 976 (985)
+.. .+.+.| .++||.+ + ... .+..+.+|++++.. +|++|++ +++++|++++++..
T Consensus 357 ~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~---~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 357 TQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMD---VVADGIIKLYQHKE 432 (456)
T ss_dssp CGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHH---HHHHHHHHHHHTGG
T ss_pred ChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHH---HHHHHHHHHHhhhh
Confidence 333 347777 6779864 2 110 11237899999887 8999999 99999999877543
No 312
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.66 E-value=2.2e-14 Score=166.66 Aligned_cols=301 Identities=15% Similarity=0.127 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHhCCCc-cceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCCCcHHHHHhcC---------
Q 001990 633 MFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPATAAMCG--------- 701 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~-~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~-~~Hg~~~~~~~~~G--------- 701 (985)
...++++.++++++.+. ..++.++|++++++++.+++.+ .++++||+.+ .+|+.........+
T Consensus 86 ~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~------~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 159 (433)
T 1zod_A 86 PVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLV------TGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGP 159 (433)
T ss_dssp HHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHH------HTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCC
T ss_pred HHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHh------hCCCeEEEECCCcCCCChhHHhhcCCccccccCC
Confidence 45678889999998654 3466788888887766655543 1346777755 67877655443211
Q ss_pred --cEEEEEeCCCC------------CCCCHHHHHHHHHhcC-CCeEEEEEEcC--CCccccccC----HHHHHHHHHHcC
Q 001990 702 --MKIVSVGTDAK------------GNINIEELRKAAEANR-DNLSTLMVTYP--STHGVYEEG----IDEICKIIHDNG 760 (985)
Q Consensus 702 --~~v~~v~~~~~------------g~iDle~L~~~i~~~~-~~t~~Vvi~~p--n~~G~i~~d----i~eI~~la~~~g 760 (985)
..++.++.+.. +.+|+++|+++++++. +++++|++ +| |++|.+. + +++|+++|++||
T Consensus 160 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~-~p~~~~~G~~~-~~~~~l~~l~~l~~~~~ 237 (433)
T 1zod_A 160 AAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIA-EPILSSGGIIE-LPDGYMAALKRKCEARG 237 (433)
T ss_dssp CCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEE-CSEETTTTCEE-CCTTHHHHHHHHHHHHT
T ss_pred CCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEE-ccccCCCCccc-CCHHHHHHHHHHHHHhC
Confidence 12344443211 1246999999997532 46666665 45 4579654 3 999999999999
Q ss_pred CEEEEEccccccccCCCCCC-----cCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCC
Q 001990 761 GQVYMDGANMNAQVGLTSPG-----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEK 835 (985)
Q Consensus 761 ~lliVD~a~~~~~~g~~~~g-----~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~ 835 (985)
+++|+|++|. +++-..... ...+|++++ .|+|+ +|.++|++++++++.+.+......
T Consensus 238 ~~li~DEv~~-~~g~~g~~~~~~~~~~~~di~s~--sK~~~-----~G~~ig~~~~~~~~~~~~~~~~~~---------- 299 (433)
T 1zod_A 238 MLLILDEAQT-GVGRTGTMFACQRDGVTPDILTL--SKTLG-----AGLPLAAIVTSAAIEERAHELGYL---------- 299 (433)
T ss_dssp CEEEEECTTT-TTTTTSSSSTHHHHTCCCSEEEE--CHHHH-----TTSSCEEEEECHHHHHHHHHTTCC----------
T ss_pred CEEEEecccc-CCCcCchHhHHhhcCCCCCEEEe--ccccc-----CCCCeeEEEEhHHHHHhhccCCCC----------
Confidence 9999999985 221111111 124687755 49885 256789999998776544211000
Q ss_pred CCCCCCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc---CCee--EcCCCCceeEEEEEEec
Q 001990 836 SQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLR 910 (985)
Q Consensus 836 ~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~---~~i~--~~g~~~~~~~~~vv~~~ 910 (985)
...| .+. ++..++++.+++..+.++++ .++..++.++++++|++. +... ..+ .+.+ +.+++.
T Consensus 300 ~~~t--~~~----~~~~~~a~~aal~~~~~~~~---~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~-~g~~---~~i~~~ 366 (433)
T 1zod_A 300 FYTT--HVS----DPLPAAVGLRVLDVVQRDGL---VARANVMGDRLRRGLLDLMERFDCIGDVRG-RGLL---LGVEIV 366 (433)
T ss_dssp CCCT--TTT----CHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHHHCTTEEEEEE-ETTE---EEEEEE
T ss_pred CCCC--CCc----CHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHHHHhCCCeEEEEE-EEEE---EEEEEe
Confidence 0011 111 22333444555655544443 345566778888887652 2321 111 1222 223332
Q ss_pred Ccc---ccCCCCHHHHHHHHHHCCCccCCCC-CCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 911 GLK---NTAGIEPEDVAKRLMDYGFHGPTMS-WPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 911 ~~~---~~~g~~~~~l~~~L~e~Gi~~~~~~-~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
... ........++.+.|.++||.+.... +..++.+||+++..+|++|++ +++++|+++++++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~---~~l~~l~~~l~~~ 432 (433)
T 1zod_A 367 KDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEID---LGLSLLGQAIERA 432 (433)
T ss_dssp EETTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHH---HHHHHHHHHHHHH
T ss_pred cCccccCCChHHHHHHHHHHHHCCCeEeccCCCCCCCEEEEECCcCCCHHHHH---HHHHHHHHHHHHh
Confidence 100 0001236789999999999875432 212378999999999999999 9999999887653
No 313
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.66 E-value=9.9e-16 Score=177.73 Aligned_cols=257 Identities=15% Similarity=0.031 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHhCCCccc--eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCCCcHHHH----------Hhc
Q 001990 634 FNNLGEWLCTITGFDSFS--LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPATA----------AMC 700 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~~--~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~-~~Hg~~~~~~----------~~~ 700 (985)
.+++++++++++|.+.+. +++++|++++.+++.++. .++|+||+++ ..|+.+...+ +..
T Consensus 67 ~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~--------~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~ 138 (431)
T 3ht4_A 67 RDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGIL--------RPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEY 138 (431)
T ss_dssp HHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTC--------CTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGG
T ss_pred HHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhC--------CCCCEEEEeCCCCchhHHHHHhhcccccchHHHc
Confidence 667899999999998753 335678776655544321 4678999987 7777665433 347
Q ss_pred CcEEEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEc----C-CCccccccCHHHHHHHHHH--cCCEEEEEccccccc
Q 001990 701 GMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTY----P-STHGVYEEGIDEICKIIHD--NGGQVYMDGANMNAQ 773 (985)
Q Consensus 701 G~~v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~----p-n~~G~i~~di~eI~~la~~--~g~lliVD~a~~~~~ 773 (985)
|++++.++.++++.+|+++|+++++ +++++|++++ | +..|... |+++|+++|++ +|+++++|+++....
T Consensus 139 G~~~~~v~~~~~~~~d~e~l~~~l~---~~tk~V~i~~sp~np~~~~~~~~-~l~~i~~la~~~~~~~~livDea~~~~~ 214 (431)
T 3ht4_A 139 NIGYNAVPLTEGGLVDFEAVAAAIH---SNTKMIGIQRSKGYATRPSFTIS-QIKEMIAFVKEIKPDVVVFVDNCYGEFI 214 (431)
T ss_dssp TCEEEECCBCTTSSBCHHHHHHHCC---TTEEEEEEECSCTTSSSCCCCHH-HHHHHHHHHHHHCTTCEEEEECTTCTTS
T ss_pred CCEEEEeCCCCCCCcCHHHHHhhcC---CCCeEEEEECCCCCCCCCcCCHH-HHHHHHHHHHhhCCCCEEEEeCCChhhc
Confidence 9999999998889999999999997 7899999996 4 2467776 89999999999 999999999986433
Q ss_pred cCCCCCCcCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHH
Q 001990 774 VGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 774 ~g~~~~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~ 853 (985)
.. ..+..+|+|++++|+||+|+. +++|.+|++++++++++.+...... .+.+...+..++....
T Consensus 215 ~~-~~~~~~g~Di~~~S~sK~lgg---~~~~~GG~v~~~~~li~~l~~~~~~-----------~~~g~~~~~~~~~~~~- 278 (431)
T 3ht4_A 215 EE-QEPCHVGADLMAGSLIKNPGG---GIVKTGGYIVGKEQYVEACAYRLTS-----------PGIGAEAGASLYSLQE- 278 (431)
T ss_dssp SS-CCGGGTTCSEEEEETTSGGGT---TTCSSCEEEEECHHHHHHHHHHHSC-----------TTTTTSCSCCCSCSHH-
T ss_pred cC-CCccccCCeEEEcCccccCCC---CCCCceEEEEecHHHHHHHHHHhcc-----------CCcccccCccHHHHHH-
Confidence 21 345567899999999999852 1235459999998766544211000 0000000000010111
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCce-eEEEEEEecCccccCCCCHHHHHHHHHHCC
Q 001990 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTV-AHEFIVDLRGLKNTAGIEPEDVAKRLMDYG 931 (985)
Q Consensus 854 ~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~-~~~~vv~~~~~~~~~g~~~~~l~~~L~e~G 931 (985)
+...+ +.+....++..++++++++.|++ ++.+ ++++..+. ...+.+.+. ......++++.|.+..
T Consensus 279 --~~~~l-----~~~~~~~~~~~~~a~~l~~~L~~~g~~v-~p~~~~~~~~li~~i~l~-----~~~~~~~~~~~l~~~~ 345 (431)
T 3ht4_A 279 --MYQGF-----FLAPHVAGQALKGAIFTAAFLEKLGMNT-SPAWNAPRTDLIQSVQFD-----DKDRMIAFCQAIQYAS 345 (431)
T ss_dssp --HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCCE-ESCTTSCCSSSCCEEECC-----CHHHHHHHHHHHHHTS
T ss_pred --HHhHh-----hhHHHHHHHHHHHHHHHHHHHHhCcCEe-cCCCCCCCccEEEEEEeC-----CHHHHHHHHHHHHhcC
Confidence 11112 22344566778889999999987 6766 44321110 001233332 1123567888888764
No 314
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.66 E-value=1.2e-14 Score=166.56 Aligned_cols=267 Identities=15% Similarity=0.121 Sum_probs=181.6
Q ss_pred HHHHHHHHhh----CC--CCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001990 215 NFQTMIADLT----GL--PMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 215 e~q~~ia~L~----g~--~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~ 288 (985)
++++.+|+++ |. ++.++.+++|+|.+++.++.++ .. +||+|++++..|+++...++. .|.+++.++.
T Consensus 82 ~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l-~~--~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~v~~ 154 (389)
T 1o4s_A 82 ELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMAL-LD--PGDEVIVFSPVWVSYIPQIIL----AGGTVNVVET 154 (389)
T ss_dssp HHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHH-CC--TTCEEEEEESCCTTHHHHHHH----TTCEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHh-CC--CCCEEEEcCCCchhHHHHHHH----cCCEEEEEec
Confidence 3455666655 76 5568888999998888877665 22 789999999999998887643 5777777643
Q ss_pred ----------hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEeccccccCCC----CCC----
Q 001990 289 ----------KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILK----PPG---- 345 (985)
Q Consensus 289 ----------~~l~~-l~~~t~~V~v~~p-n~~G~i~d---l~~I~~~a~~~galliV~a~~~alg~l~----~p~---- 345 (985)
++|++ +++++++|++.+| |++|.+.+ +++|+++|+++|+++++| +..+.+... +..
T Consensus 155 ~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D-ea~~~~~~~g~~~~~~~~~~ 233 (389)
T 1o4s_A 155 FMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISD-EVYDSLVYTDEFTSILDVSE 233 (389)
T ss_dssp CGGGTTCCCHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE-CTTTTSBCSSCCCCHHHHCS
T ss_pred CCccCCCCCHHHHHHhcccCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEE-ccccccccCCCCCCHhhcCC
Confidence 34555 6778999999988 67999865 999999999999999995 233332221 111
Q ss_pred cccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchh
Q 001990 346 ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQ 424 (985)
Q Consensus 346 ~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~ 424 (985)
..+.|++++|. |.|+.| |..+|++++++++.+.+... +...+.+. .
T Consensus 234 ~~~~~i~~~s~sK~~~~~----G~r~G~l~~~~~~~~~l~~~--------------------------~~~~~~~~---~ 280 (389)
T 1o4s_A 234 GFDRIVYINGFSKSHSMT----GWRVGYLISSEKVATAVSKI--------------------------QSHTTSCI---N 280 (389)
T ss_dssp SSTTEEEEEESTTTTTCG----GGCCEEEECCHHHHHHHHHH--------------------------HHHHTCSC---C
T ss_pred CCCcEEEEeechhhcCCc----ccceEEEEeCHHHHHHHHHH--------------------------hhhcccCC---C
Confidence 25789999998 877532 12369999988877654100 00011111 1
Q ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecC-CHHHHHHHHH-HcCceeeee
Q 001990 425 ALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA-DAHAIASAAY-KIEMNLRVV 502 (985)
Q Consensus 425 ~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~-~~~~l~~~L~-~~Gi~~~~~ 502 (985)
.+ +..++. ..+. .+++++.++..++.+++.+.|+++| +++.......-+.+..+ +..++.++|. ++||.+...
T Consensus 281 ~~-~~~a~~--~~l~-~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g 355 (389)
T 1o4s_A 281 TV-AQYAAL--KALE-VDNSYMVQTFKERKNFVVERLKKMG-VKFVEPEGAFYLFFKVRGDDVKFCERLLEEKKVALVPG 355 (389)
T ss_dssp HH-HHHHHH--HHTT-CCCHHHHHHHHHHHHHHHHHHHHTT-CCCCCCSBSSEEEEECSSCHHHHHHHHHHHHCEECEEG
T ss_pred HH-HHHHHH--HHHh-ccHHHHHHHHHHHHHHHHHHHHhcC-CeeecCCcceEEEEeCCCCHHHHHHHHHHHCCEEEeCc
Confidence 11 112222 2232 3478889999999999999999886 77653211111233443 3788999997 789988543
Q ss_pred ----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 503 ----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ----~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.++.+|++++ +++++++++++.|..
T Consensus 356 ~~f~~~~~~Ris~~--~~~~~l~~~l~~l~~ 384 (389)
T 1o4s_A 356 SAFLKPGFVRLSFA--TSIERLTEALDRIED 384 (389)
T ss_dssp GGGTCTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred hhcCCCCeEEEEEe--CCHHHHHHHHHHHHH
Confidence 1478999998 489999999998863
No 315
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.66 E-value=7.1e-16 Score=172.85 Aligned_cols=269 Identities=12% Similarity=0.084 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHhC---CCccce-ecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeC
Q 001990 634 FNNLGEWLCTITG---FDSFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT 709 (985)
Q Consensus 634 ~~el~~~la~l~G---~~~~~~-~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~ 709 (985)
..++++.++++++ .+...+ +.++|+++. ..+++. - +++|+++ +.|..+...++..|++++.+|.
T Consensus 58 ~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al---~~~~~~-------~-gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~ 125 (335)
T 1uu1_A 58 DEELIEKILSYLDTDFLSKNNVSVGNGADEII---YVMMLM-------F-DRSVFFP-PTYSCYRIFAKAVGAKFLEVPL 125 (335)
T ss_dssp CHHHHHHHHHHHTCSSCCGGGEEEESSHHHHH---HHHHHH-------S-SEEEECS-SSCHHHHHHHHHHTCEEEECCC
T ss_pred hHHHHHHHHHHcCCCCCCHHHEEEcCChHHHH---HHHHHH-------h-CCcEEEC-CCcHHHHHHHHHcCCeEEEecc
Confidence 3478889999998 665444 445555444 333332 1 4789998 8776666667788999999998
Q ss_pred CCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEcccccccc-CCCC-CCcCCCcE
Q 001990 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQV-GLTS-PGYIGADV 786 (985)
Q Consensus 710 ~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~-g~~~-~g~~g~Di 786 (985)
++++.+|+++| +++++|++++| |++|.+. +.+++.++++..| ++++|++|..... .... .+..+.++
T Consensus 126 ~~~~~~d~~~l--------~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i 195 (335)
T 1uu1_A 126 TKDLRIPEVNV--------GEGDVVFIPNPNNPTGHVF-EREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLA 195 (335)
T ss_dssp CTTSCCCCCCC--------CTTEEEEEESSCTTTCCCC-CHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEE
T ss_pred CCCCCCCHHHc--------CCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEE
Confidence 77777888776 36788998999 5799998 8999999999888 9999999853111 1111 12345678
Q ss_pred EEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhchh
Q 001990 787 CHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSK 866 (985)
Q Consensus 787 ~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~ 866 (985)
++.|++|+|+. .|.++|++++++++.+.+.... .+ .+.+ .....++.+++.. .+
T Consensus 196 ~~~s~sK~~g~----~G~r~G~~~~~~~~~~~l~~~~--------------~~--~~~~----~~~~~~~~~~l~~--~~ 249 (335)
T 1uu1_A 196 VIRTFSKAFSL----AAQRVGYVVASEKFIDAYNRVR--------------LP--FNVS----YVSQMFAKVALDH--RE 249 (335)
T ss_dssp EEEESTTTTTC----GGGCCEEEEECHHHHHHHHHHS--------------CT--TCSC----HHHHHHHHHHHHT--HH
T ss_pred EEecchhhcCC----cccCeEEEEeCHHHHHHHHHhc--------------CC--CCcC----HHHHHHHHHHhCC--HH
Confidence 89999999853 3567899999887765432100 00 0111 1122223333432 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEE
Q 001990 867 GLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTL 945 (985)
Q Consensus 867 gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~l 945 (985)
.+.+..++..++++++.+.|++ ++.+ . ++.+. .+.++++ +.+..++.+.|.++||.+.. .++.+
T Consensus 250 ~~~~~~~~~~~~~~~l~~~L~~~g~~~-~-~~~~~---~~~~~~~------~~~~~~~~~~l~~~gi~v~~----~~~~i 314 (335)
T 1uu1_A 250 IFEERTKFIVEERERMKSALREMGYRI-T-DSRGN---FVFVFME------KEEKERLLEHLRTKNVAVRS----FREGV 314 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCB-C-CCCSS---EEEEECC------THHHHHHHHHHHHHTEEEEE----ETTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCcEE-c-CCCCe---EEEEECC------CCCHHHHHHHHHHCCEEEEE----CCCeE
Confidence 4566667778888999999987 4443 2 22222 2335543 23467899999999998753 24789
Q ss_pred EEeccCCCCHHhhchHHHHHHHHHHH
Q 001990 946 MIEPTESESKVCHNREDLFFQILLSL 971 (985)
Q Consensus 946 ris~t~~~t~eeId~~~~~i~aL~~i 971 (985)
|++++ +++|++ +++++|+++
T Consensus 315 Ris~~---~~~~i~---~~~~~l~~~ 334 (335)
T 1uu1_A 315 RITIG---KREEND---MILRELEVF 334 (335)
T ss_dssp EEECC---CHHHHH---HHHHHHHCC
T ss_pred EEEeC---CHHHHH---HHHHHHHhh
Confidence 99984 578899 999988753
No 316
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.66 E-value=2.3e-15 Score=173.01 Aligned_cols=276 Identities=11% Similarity=0.047 Sum_probs=188.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCC---cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001990 208 GRLESLLNFQTMIADLTGLPM---SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 208 g~l~~i~e~q~~ia~L~g~~~---~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~ 284 (985)
|..+...++++.+++++|.+. .++.+++|+|.+++.++.++ .. +||+|+++...|+++...++. .|.+++
T Consensus 79 g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l-~~--~gd~vl~~~~~~~~~~~~~~~----~g~~~~ 151 (407)
T 3nra_A 79 GDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT-VA--RGDKVAIVQPDYFANRKLVEF----FEGEMV 151 (407)
T ss_dssp CCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTT-CC--TTCEEEEEESCCTHHHHHHHH----TTCEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHh-CC--CCCEEEEcCCcccchHHHHHH----cCCEEE
Confidence 445566677788999999853 57888899998888776654 23 789999999999998887753 477776
Q ss_pred EeCc--------------hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEeccccccCCC---
Q 001990 285 VSDL--------------KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILK--- 342 (985)
Q Consensus 285 ~~~~--------------~~l~~-l~~~t~~V~v~~p-n~~G~i~d---l~~I~~~a~~~galliV~a~~~alg~l~--- 342 (985)
.++. +++++ +.+++++|++.+| |++|.+.+ +++|+++|+++|+++++| +.++.+...
T Consensus 152 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D-ea~~~~~~~g~~ 230 (407)
T 3nra_A 152 PVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIAD-QLYSRLRYAGAS 230 (407)
T ss_dssp EEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE-CTTTTSBCTTCC
T ss_pred EeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEE-ccccccccCCCC
Confidence 6654 34555 6668899999998 67999987 999999999999999995 333321111
Q ss_pred -CC------CcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEeccccccccccc
Q 001990 343 -PP------GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRD 414 (985)
Q Consensus 343 -~p------~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre 414 (985)
.+ ..++.+++++|. |.|+.| |..+|++++++++++.+... ++.
T Consensus 231 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~l~~~-------------------------~~~ 281 (407)
T 3nra_A 231 YTHLRAEAAVDAENVVTIMGPSKTESLS----GYRLGVAFGSRAIIARMEKL-------------------------QAI 281 (407)
T ss_dssp CCCGGGCTTSCGGGEEEEECSSSTTCCG----GGCCEEEEECHHHHHHHHHH-------------------------HHH
T ss_pred CCChhhcCcccCCcEEEEeCcccccCCC----eeeEEEEEcCHHHHHHHHHH-------------------------Hhh
Confidence 01 236778999997 887633 34568999988877665110 000
Q ss_pred ccCCCccchhHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecC--C--HHHH
Q 001990 415 KATSNICTAQALLANMAAMYAVYH--GPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA--D--AHAI 488 (985)
Q Consensus 415 ~atsni~t~~~l~a~~aa~y~~~~--g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~--~--~~~l 488 (985)
...++ ..+ +..++. ..+ +.+.+++..++..++.+++++.|++++++++.......-+.+.++ + ..++
T Consensus 282 ---~~~~~-~~~-~~~a~~--~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (407)
T 3nra_A 282 ---VSLRA-AGY-SQAVLR--GWFDEAPGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKLAVAPAEF 354 (407)
T ss_dssp ---HTSSS-CHH-HHGGGG--GTTCCCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCBSSCHHHH
T ss_pred ---hccCC-ChH-HHHHHH--HHHhccchHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCCCCCCHHHH
Confidence 01111 111 111111 222 335578888999999999999999884377653221112223332 2 7889
Q ss_pred HHHHHH-cCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 489 ASAAYK-IEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 489 ~~~L~~-~Gi~~~~~------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.++|.+ +||.+... ..+.+|++++. ++++++++++.|..
T Consensus 355 ~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~ 400 (407)
T 3nra_A 355 VKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ--DHEAAVAAARRIVT 400 (407)
T ss_dssp HHHHHHHHCEECEEGGGTCTTCTTBEEEECCS--CHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC--CHHHHHHHHHHHHH
Confidence 999975 59988642 24789999984 99999999999874
No 317
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.66 E-value=1.5e-14 Score=163.39 Aligned_cols=261 Identities=13% Similarity=0.134 Sum_probs=180.8
Q ss_pred HHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-----
Q 001990 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----- 288 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~----- 288 (985)
.++++.+|+++|.++.++.+++|+|.++++++.++ |+|+++...|+++...++. .|.+++.++.
T Consensus 64 ~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~-------d~vi~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~ 132 (361)
T 3ftb_A 64 RRLNKSIENYLKLKDIGIVLGNGASEIIELSISLF-------EKILIIVPSYAEYEINAKK----HGVSVVFSYLDENMC 132 (361)
T ss_dssp HHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTC-------SEEEEEESCCTHHHHHHHH----TTCEEEEEECCTTSC
T ss_pred HHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHc-------CcEEEecCChHHHHHHHHH----cCCeEEEeecCcccC
Confidence 46788999999998888989999997777655432 8999999999998887754 4888887754
Q ss_pred ---hhhhc-cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEeccccccCC-------CCCCcccceEEE
Q 001990 289 ---KDIDY-KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTIL-------KPPGELGADIVV 353 (985)
Q Consensus 289 ---~~l~~-l~~~t~~V~v~~p-n~~G~i~---dl~~I~~~a~~~galliV~a~~~alg~l-------~~p~~~GaDi~v 353 (985)
+++++ +++ +++|++.+| |.+|.+. ++++|+++|+++|+++++|. ..+.... ......+.++++
T Consensus 133 ~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~i~~ 210 (361)
T 3ftb_A 133 IDYEDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDE-AFIEFTGDPSSSFVGEIKNYSCLFII 210 (361)
T ss_dssp CCHHHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEEC-SSGGGTCCTTSSSGGGTTTCSSEEEE
T ss_pred CCHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEEC-cchhhcCCcccchhHhcccCCCEEEE
Confidence 35666 666 999999998 6899886 47778888889999999952 3221111 112334556888
Q ss_pred ecC-ccccccCCCCCCceEEEE-EchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHH
Q 001990 354 GSA-QRFGVPMGYGGPHAAFLA-TSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMA 431 (985)
Q Consensus 354 ~s~-k~lg~P~~~GGP~~G~l~-~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~a 431 (985)
+|. |.++.| |-.+|++. .++++.+.+... . ...+.|. ....++.+
T Consensus 211 ~s~sK~~~~~----G~r~g~~~~~~~~~~~~~~~~----------~----------------~~~~~~~---~~~~~~~~ 257 (361)
T 3ftb_A 211 RAMTKFFAMP----GIRFGYGITNNKEIAAKIKAK----------Q----------------NPWNINC---FAEMAAIN 257 (361)
T ss_dssp EESSSTTSCG----GGCCEEEEESCHHHHHHHHTT----------S----------------CTTCSCH---HHHHHHHH
T ss_pred eeChhhcCCC----CcceeEEEeCCHHHHHHHHhh----------C----------------CCCCCCH---HHHHHHHH
Confidence 887 877533 23468877 677776654110 0 0001111 11111111
Q ss_pred HHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEE-EcCCCCcceEEEecCC--HHHHHHHHHHcCceeeee------
Q 001990 432 AMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVE-VQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVV------ 502 (985)
Q Consensus 432 a~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~-~~~~~~~~~~~i~~~~--~~~l~~~L~~~Gi~~~~~------ 502 (985)
.+...+.++++.++..++.+++++.|+++++++ +.... ..-+.+..++ ..++.+.|.++||.++..
T Consensus 258 ----~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~ 332 (361)
T 3ftb_A 258 ----CLKDTNYIEESLLWIKKERKRFIEELNKIGFIKRVFSPH-ANFVLCRLENISGEKLYDSLLKEDIVIRRCCNFIGL 332 (361)
T ss_dssp ----TSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCS-SSEEEEEESSSCHHHHHHHHHTTTEECEECTTSTTC
T ss_pred ----HhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCCC-CeEEEEEcCCCCHHHHHHHHHHCCeEEeeCccCCCC
Confidence 122346688899999999999999999985587 65321 1224455553 889999999999988642
Q ss_pred cCCeEEEEeccCCCHHHHHHHHHHHh
Q 001990 503 DSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 503 ~~~~lris~~~~~t~edid~ll~~l~ 528 (985)
.++.+|++++ +.+|+++++++|.
T Consensus 333 ~~~~iRis~~---~~~~~~~l~~~l~ 355 (361)
T 3ftb_A 333 DDSFVRFAIK---DEKKNTKFLRALK 355 (361)
T ss_dssp CTTEEEEECC---CHHHHHHHHHHHH
T ss_pred CCCEEEEEcC---CHHHHHHHHHHHH
Confidence 2578999987 8899999999886
No 318
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.66 E-value=1.8e-14 Score=164.96 Aligned_cols=296 Identities=11% Similarity=0.069 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhh----hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC
Q 001990 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI----QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD 287 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~----~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~ 287 (985)
...++++.+|+++|.+ .+.++.+||.+++.++.+++. ..++||+|+++...|+++...++. .|.+++.++
T Consensus 35 ~~~~l~~~la~~~~~~--~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~~~----~g~~~~~~~ 108 (390)
T 3b8x_A 35 YVKQYETQFAKTFGSK--YAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQ----YGLRVKFVD 108 (390)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHHH----TTCEEEEEC
T ss_pred HHHHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHHHH----cCCEEEEEe
Confidence 4567889999999987 467888999888877776520 013789999999999999998763 578888775
Q ss_pred c---------hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCCCCcccc--eEEEec
Q 001990 288 L---------KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGA--DIVVGS 355 (985)
Q Consensus 288 ~---------~~l~~-l~~~t~~V~v~~pn~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~p~~~Ga--Di~v~s 355 (985)
. +++++ +++++++|++++ ++|...|+++|.++|+++|+++++| +..+.|.......+|+ |+.+.+
T Consensus 109 ~~~~~~~~d~~~l~~~i~~~~~~v~~~~--~~g~~~~~~~i~~l~~~~~~~li~D-~a~~~g~~~~~~~~g~~~~~~~~s 185 (390)
T 3b8x_A 109 IDINTLNIDIESLKEAVTDSTKAILTVN--LLGNPNNFDEINKIIGGRDIILLED-NCESMGATFNNKCAGTFGLMGTFS 185 (390)
T ss_dssp BCTTTCSBCHHHHHHHCCTTEEEEEEEC--GGGCCCCHHHHHHHHTTSCCEEEEE-CTTCTTCEETTEETTSSSSEEEEE
T ss_pred cCccccCcCHHHHHHHhCcCCeEEEEEC--CccChhhHHHHHHHHHHcCCEEEEE-CcCcccCEECCcccccccceEEEE
Confidence 4 34555 778899999874 6788899999999999999999995 3455554433445676 555433
Q ss_pred ---CccccccCCCCCCceEEEEEch-hhHhcCCCc-eeeeeecCCCCcceEEeccc--ccccccccccCCCccchhHHHH
Q 001990 356 ---AQRFGVPMGYGGPHAAFLATSQ-EYKRMMPGR-IVGVSIDSSGKPALRVAMQT--REQHIRRDKATSNICTAQALLA 428 (985)
Q Consensus 356 ---~k~lg~P~~~GGP~~G~l~~~~-~~~~~lp~~-~vG~s~d~~g~~~~~l~l~t--re~~~rre~atsni~t~~~l~a 428 (985)
+|+++ +|.| |++++++ ++.+++... ..|+..+......+.+...+ .+...+++....|..+ ..+.+
T Consensus 186 ~~~~k~~~-----~g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~a 258 (390)
T 3b8x_A 186 SFYSNHIA-----TMEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRP-LEMSG 258 (390)
T ss_dssp CCTTSSSC-----SSSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCC-CHHHH
T ss_pred ccCCCCCc-----cCCc-eEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCc-CHHHH
Confidence 35553 2234 8898886 554433211 11210000000000000000 0001111111111111 11111
Q ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCC---CcceEEEecC---C--HHHHHHHHHHcCceee
Q 001990 429 NMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP---FFDTVKVKCA---D--AHAIASAAYKIEMNLR 500 (985)
Q Consensus 429 ~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~---~~~~~~i~~~---~--~~~l~~~L~~~Gi~~~ 500 (985)
..+ + .. .+.++++.++..++++++.+.|+++.++++...+ .+..+.+.++ + ..++.+.|.++||.++
T Consensus 259 a~~-l--~~--l~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~ 333 (390)
T 3b8x_A 259 AIG-I--EQ--LKKLPRFISVRRKNAEYFLDKFKDHPYLDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECR 333 (390)
T ss_dssp HHH-H--HH--HHHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCB
T ss_pred HHH-H--HH--HHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCCCcccEEEEEEecCcCcccHHHHHHHHHHCCCCee
Confidence 111 1 11 1457788899999999999999998448886431 2233555444 2 7889999999999765
Q ss_pred eec------C-----------------------CeEEEEeccCCCHHHHHHHHHHHh
Q 001990 501 VVD------S-----------------------NTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 501 ~~~------~-----------------------~~lris~~~~~t~edid~ll~~l~ 528 (985)
... . +.+|++++..+|++|+++++++|+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~di~~i~~~l~ 390 (390)
T 3b8x_A 334 PIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDEIDYLREVLK 390 (390)
T ss_dssp CSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHHHHHHHHHTC
T ss_pred eecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHHHHHHHHhhC
Confidence 310 0 259999999999999999999863
No 319
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.66 E-value=2.5e-14 Score=163.42 Aligned_cols=269 Identities=12% Similarity=0.101 Sum_probs=180.3
Q ss_pred HHHHHHHHhh----CC--CCcc-eeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC
Q 001990 215 NFQTMIADLT----GL--PMSN-ASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD 287 (985)
Q Consensus 215 e~q~~ia~L~----g~--~~~~-~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~ 287 (985)
++++.+|+++ |. ++.+ +.+++|+|.+++.++.++ . ++||+|++++..|+++...++. .|.+++.++
T Consensus 67 ~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~-~--~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~v~ 139 (389)
T 1gd9_A 67 ELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAF-L--KDGEEVLIPTPAFVSYAPAVIL----AGGKPVEVP 139 (389)
T ss_dssp HHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTT-C--CTTCEEEEEESCCTTHHHHHHH----HTCEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHh-C--CCCCEEEEcCCCchhHHHHHHH----CCCEEEEec
Confidence 3455666665 84 5567 888999998888776654 2 2789999999999998877653 467776664
Q ss_pred c----------hhhhc-cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEeccccccCCC-----CC---
Q 001990 288 L----------KDIDY-KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK-----PP--- 344 (985)
Q Consensus 288 ~----------~~l~~-l~~~t~~V~v~~p-n~~G~i~---dl~~I~~~a~~~galliV~a~~~alg~l~-----~p--- 344 (985)
. +++++ +++++++|++.+| |.+|.+. ++++|+++|+++|+++++| +..+.+... +.
T Consensus 140 ~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~D-e~~~~~~~~~~~~~~~~~~ 218 (389)
T 1gd9_A 140 TYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISD-EVYEHFIYDDARHYSIASL 218 (389)
T ss_dssp CCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE-CTTTTCBCTTCCCCCGGGS
T ss_pred cCCccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe-hhhhhcccCCCCCCCHhhc
Confidence 3 34555 6778999999988 5799886 6999999999999999995 333332221 11
Q ss_pred -CcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccc
Q 001990 345 -GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT 422 (985)
Q Consensus 345 -~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t 422 (985)
+..+.|++++|. |.|+.| |-.+|++++++++++.+.... ...+ .+.
T Consensus 219 ~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~~~~--------------------------~~~~--~~~ 266 (389)
T 1gd9_A 219 DGMFERTITVNGFSKTFAMT----GWRLGFVAAPSWIIERMVKFQ--------------------------MYNA--TCP 266 (389)
T ss_dssp TTCGGGEEEEEESTTTTTCG----GGCCEEEECCHHHHHHHHHHH--------------------------TTTT--CSC
T ss_pred cCCCCCEEEEecChhhcCCc----ccceEEEEECHHHHHHHHHHH--------------------------hhhc--cCC
Confidence 125789999998 876422 223699999988776541100 0001 111
Q ss_pred hh-HHHHHHHHHHHHHcCcc--hHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecC----CHHHHHHHHH-H
Q 001990 423 AQ-ALLANMAAMYAVYHGPE--GLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA----DAHAIASAAY-K 494 (985)
Q Consensus 423 ~~-~l~a~~aa~y~~~~g~~--Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~----~~~~l~~~L~-~ 494 (985)
+. ...+..+++ . .+.+ .++++.++..++.+++.+.|+++| +++.......-+.+..+ ...++.++|. +
T Consensus 267 ~~~~~~a~~~~l--~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 342 (389)
T 1gd9_A 267 VTFIQYAAAKAL--K-DERSWKAVEEMRKEYDRRRKLVWKRLNEMG-LPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKE 342 (389)
T ss_dssp CHHHHHHHHHHH--T-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH--h-CCCcchHHHHHHHHHHHHHHHHHHHHHHcC-CeecCCCeeeEEEEeccCCCCCHHHHHHHHHHh
Confidence 11 121222221 1 1233 678888999999999999999886 77653211111223433 2788999998 8
Q ss_pred cCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 495 IEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 495 ~Gi~~~~~------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+||.+... .++.+|++++. ++++++++++.|..
T Consensus 343 ~gi~v~~g~~~~~~~~~~iRi~~~~--~~~~i~~~l~~l~~ 381 (389)
T 1gd9_A 343 ARVAVVPGSAFGKAGEGYVRISYAT--AYEKLEEAMDRMER 381 (389)
T ss_dssp TCEECEEGGGGCGGGTTBEEEECCS--CHHHHHHHHHHHHH
T ss_pred CCEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 89987542 15789999985 89999999999874
No 320
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.65 E-value=4.3e-16 Score=178.50 Aligned_cols=289 Identities=11% Similarity=0.048 Sum_probs=176.5
Q ss_pred HHHHHHHHHHh-CC--Cccc-ee--cChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEe
Q 001990 635 NNLGEWLCTIT-GF--DSFS-LQ--PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 635 ~el~~~la~l~-G~--~~~~-~~--~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~ 708 (985)
.++++.+++++ +. +... ++ +++|++++..++.+++.+ .++++|+++.+.|..+...++..|.+++.+|
T Consensus 72 ~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~ 145 (394)
T 2ay1_A 72 PEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMA------NPDLRVFVSDPTWPNHVSIMNFMGLPVQTYR 145 (394)
T ss_dssp HHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHH------CTTCCEEEEESCCHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHHhc------CCCCEEEEcCCCChhHHHHHHHcCCceEEEe
Confidence 35666777765 44 4433 33 667777765555544432 2567899988766666666778899999999
Q ss_pred CC--CCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccccC-------C
Q 001990 709 TD--AKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQVG-------L 776 (985)
Q Consensus 709 ~~--~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~--di~eI~~la~~~g~lliVD~a~~~~~~g-------~ 776 (985)
.+ +++.+|+++|+++++++.++++++++++| |++|.+.+ ++++|+++|+++|+++++|+++.....+ +
T Consensus 146 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~ 225 (394)
T 2ay1_A 146 YFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGT 225 (394)
T ss_dssp CEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHH
T ss_pred cccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHH
Confidence 85 45789999999999854335777778888 57898852 4778999999999999999998521110 0
Q ss_pred CCCCcCCCc-EEEeCCcccccccCCCCCCcceeeee---cccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhH
Q 001990 777 TSPGYIGAD-VCHLNLHKTFCIPHGGGGPGMGPIGV---KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALI 852 (985)
Q Consensus 777 ~~~g~~g~D-i~~~s~hKtl~~p~g~GGPg~G~l~~---~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~ 852 (985)
......+.| +++.|+||+|+. +|.++|++++ ++++.+.+....... ....+... +. ..
T Consensus 226 ~~~~~~~~~~i~~~s~sK~~~~----~G~riG~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~--~~----~~ 287 (394)
T 2ay1_A 226 RLIASRIPEVLIAASCSKNFGI----YRERTGCLLALCADAATRELAQGAMAFL--------NRQTYSFP--PF----HG 287 (394)
T ss_dssp HHHHHHCSSEEEEEECTTTTTC----GGGCEEEEEEECSSHHHHHHHHHHHHHH--------HHTTTSSC--CC----HH
T ss_pred HHHhhcCCCEEEEEeccCCCcC----cCCccceEEEEeCCHHHHHHHHHHHHHH--------HhhhcCCC--Ch----HH
Confidence 000112334 567788998853 3567899987 554322111000000 00001111 11 11
Q ss_pred HHHHHHHHHHh-----chhhHHHHHHHHHHHHHHHHHHHhc-c----CCeeEcCCCCceeEEEEEEecCccccCCCCHHH
Q 001990 853 LPISYTYIAMM-----GSKGLTEASKIAILNANYMAKRLEK-H----YPILFRGVNGTVAHEFIVDLRGLKNTAGIEPED 922 (985)
Q Consensus 853 ~~~A~a~l~~l-----g~~gl~~~~~~~~~~a~~l~~~L~~-~----~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~ 922 (985)
..++.+++... -.+.+.+..++..++++++.+.|++ + +.+. .+.+..+ +.++ .+...
T Consensus 288 ~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~~~g~~--~~~~---------~~~~~ 354 (394)
T 2ay1_A 288 AKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFV--AEHRGMF--SRLG---------ATPEQ 354 (394)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHH--HHCCSSE--EECC---------CCHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEE--cCCceEE--EeeC---------CCHHH
Confidence 22222333221 0234556666777888899888876 3 3332 1111111 1122 34456
Q ss_pred HHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHH
Q 001990 923 VAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSL 971 (985)
Q Consensus 923 l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i 971 (985)
+.+.|.++||.+.. .+|++++ .+|++|++ +++++|+++
T Consensus 355 ~~~~l~~~gi~v~~-------~~Ris~~-~~~~~~i~---~~~~~l~~~ 392 (394)
T 2ay1_A 355 VKRIKEEFGIYMVG-------DSRINIA-GLNDNTIP---ILARAIIEV 392 (394)
T ss_dssp HHHHHHHHCEECCT-------TCEEEGG-GCCTTTHH---HHHHHHHHH
T ss_pred HHHHHHhCCEEecC-------CCeEEee-cCCHhhHH---HHHHHHHHc
Confidence 77778889998742 3699988 47999999 999999875
No 321
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.65 E-value=1.4e-15 Score=184.79 Aligned_cols=275 Identities=12% Similarity=0.105 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC---
Q 001990 211 ESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD--- 287 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~--- 287 (985)
..+.++|+.+|+++|++.+. .+.+|+|++..++++++. . +||+||+++.+|.|+...++. .|.++++++
T Consensus 195 g~i~eaE~~lA~~fGa~~a~-~v~nGts~An~~ai~al~-~--pGD~VLv~r~~H~S~~~~l~l----sGa~pv~v~~~~ 266 (715)
T 3n75_A 195 GPHKEAEQYIARVFNADRSY-MVTNGTSTANKIVGMYSA-P--AGSTILIDRNCHKSLTHLMMM----SDVTPIYFRPTR 266 (715)
T ss_dssp THHHHHHHHHHHHHTCSEEE-EESSHHHHHHHHHHHHHC-C--TTCEEEEESSCCHHHHHHHHH----SCCEEEEECCCB
T ss_pred HHHHHHHHHHHHHhCCCCce-EECcHHHHHHHHHHHHhC-C--CCCEEEECCCccHHHHHHHHH----cCCEEEEEeccc
Confidence 34788999999999998632 234444677777777652 3 899999999999999998753 477777764
Q ss_pred ---------------chhhhc-cC--CCEe---EEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEeccccccC-----C
Q 001990 288 ---------------LKDIDY-KS--GDVC---GVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTI-----L 341 (985)
Q Consensus 288 ---------------~~~l~~-l~--~~t~---~V~v~~pn~~G~i~dl~~I~~~a~~~galliV~a~~~alg~-----l 341 (985)
++++++ +. ++++ +|++++||++|.+.|+++|+++|+.++ ++|| +.++.++ .
T Consensus 267 ~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~pn~~G~v~dl~~I~ela~~~~--livD-EAH~~~~~f~~~~ 343 (715)
T 3n75_A 267 NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS--IHFD-SAWVPYTNFSPIY 343 (715)
T ss_dssp CTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESSCTTSEEECHHHHHHHCCCSE--EEEE-CTTCTTGGGSGGG
T ss_pred cccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECCCCCCccCCHHHHHHHhCcCc--EEEc-cccccccccCCcc
Confidence 334555 42 4455 899999999999999999999998763 5674 3343222 1
Q ss_pred C--CCCccc--ceEE---EecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccc
Q 001990 342 K--PPGELG--ADIV---VGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR 413 (985)
Q Consensus 342 ~--~p~~~G--aDi~---v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rr 413 (985)
. .+...| +|++ ++|. |+|++|. ++|+++++++..+.. + +..+.+ .
T Consensus 344 ~~~~al~~g~~aD~vii~~~S~hKtL~glt-----qgs~i~v~~~i~~~~----~--------~~~~~~----------~ 396 (715)
T 3n75_A 344 EGKCGMSGGRVEGKVIYETQSTHKLLAAFS-----QASMIHVKGDVNEET----F--------NEAYMM----------H 396 (715)
T ss_dssp TTSSTTSSSCCTTCEEEEEECHHHHSSCCT-----TCEEEEEESCCCHHH----H--------HHHHHH----------T
T ss_pred ccccccccCcCCCEEEEEEecccccccCCC-----CeeEEEeCchhhHHH----H--------HHHHHh----------h
Confidence 1 122334 7876 8887 8876432 458888875411000 0 000000 0
Q ss_pred cccCCCccchhHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHHHHHHHhcCCC------EEEcCCC-------------
Q 001990 414 DKATSNICTAQALLANMAAMYAVYHGP-EGLKTIAQRVHGLAGTFALGLKKLGT------VEVQGLP------------- 473 (985)
Q Consensus 414 e~atsni~t~~~l~a~~aa~y~~~~g~-~Gl~~i~~~~~~~a~~l~~~L~~~g~------~~~~~~~------------- 473 (985)
...++|+ ..+.++-++. .++.. +| +++.++..+++.+++++|+++++ ++++.+.
T Consensus 397 ~STSpsy---~~~AsldaA~--~~~~~~~g-~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (715)
T 3n75_A 397 TTTSPHY---GIVASTETAA--AMMKGNAG-KRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSD 470 (715)
T ss_dssp SCSSCCH---HHHHHHHHHH--HHHSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTT
T ss_pred cCCCchH---HHHHHHHHHH--HHHHhhcc-HHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcc
Confidence 1111121 2233333332 34432 34 55788999999999999987632 4554210
Q ss_pred --------------Ccce--EEEecC-----------C--HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHH
Q 001990 474 --------------FFDT--VKVKCA-----------D--AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLF 524 (985)
Q Consensus 474 --------------~~~~--~~i~~~-----------~--~~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll 524 (985)
.+++ ++|.++ + +.++.+.|+++||.++..+...+++-++..+|++++++|+
T Consensus 471 ~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~L~ 550 (715)
T 3n75_A 471 STWHGFKNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLL 550 (715)
T ss_dssp CCTTCCTTCCSSSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHHHHH
T ss_pred cccccccccccCcccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHHHH
Confidence 0232 555543 3 5789999999999999988899999999999999999999
Q ss_pred HHHhC
Q 001990 525 IVFAG 529 (985)
Q Consensus 525 ~~l~~ 529 (985)
++|..
T Consensus 551 ~aL~~ 555 (715)
T 3n75_A 551 RALTD 555 (715)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99974
No 322
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.65 E-value=5.6e-14 Score=158.91 Aligned_cols=264 Identities=12% Similarity=0.096 Sum_probs=181.2
Q ss_pred HHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCC-CEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001990 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKK-KTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g-~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~---- 288 (985)
.++++.+|+++|.++.++.+++|+|.+++.++.++. ++| |+|+++...|+.+...++. .|.+++.++.
T Consensus 61 ~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~---~~g~d~Vl~~~p~~~~~~~~~~~----~g~~~~~v~~~~~~ 133 (356)
T 1fg7_A 61 KAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC---EPGKDAILYCPPTYGMYSVSAET----IGVECRTVPTLDNW 133 (356)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC---CTTTCEEEECSSSCTHHHHHHHH----HTCEEEECCCCTTS
T ss_pred HHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHh---CCCCCEEEEeCCChHHHHHHHHH----cCCEEEEeeCCCCC
Confidence 357789999999988889899999988888776653 277 9999999999998887754 4778777754
Q ss_pred ----hhhhc-cCCCEeEEEEEcC-CCCeeeccHHH---HHHHHHhCCcEEEEEecccc-cc----CCCCCCcccceEEEe
Q 001990 289 ----KDIDY-KSGDVCGVLVQYP-GTEGEVLDYGD---FIKNAHANGVKVVMATDLLA-LT----ILKPPGELGADIVVG 354 (985)
Q Consensus 289 ----~~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~---I~~~a~~~galliV~a~~~a-lg----~l~~p~~~GaDi~v~ 354 (985)
+++++ ++ ++++|++++| |.+|.+.|.++ |++.|+ +|+++++|. ..+ ++ ...-...++.|+++.
T Consensus 134 ~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De-~~~~~~~~~~~~~~~~~~~~~i~~~ 210 (356)
T 1fg7_A 134 QLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADE-AYIEFCPQASLAGWLAEYPHLAILR 210 (356)
T ss_dssp CCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEEC-TTGGGSGGGCSGGGTTTCTTEEEEE
T ss_pred CCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEc-cchhhcCCCcHHHHHhhCCCEEEEe
Confidence 34555 66 8999999998 67999977554 455566 899999952 322 21 011113467889998
Q ss_pred cC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHH
Q 001990 355 SA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 355 s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~ 433 (985)
|. |.|+.| |..+|++++++++++.+.. .+.+.+ . ..+ +..++.
T Consensus 211 s~sK~~g~~----G~r~G~~~~~~~~~~~l~~----------------------------~~~~~~--~-~~~-~~~a~~ 254 (356)
T 1fg7_A 211 TLSKAFALA----GLRCGFTLANEEVINLLMK----------------------------VIAPYP--L-STP-VADIAA 254 (356)
T ss_dssp ESSSTTCCG----GGCCEEEEECHHHHHHHHH----------------------------HSCSSC--S-CHH-HHHHHH
T ss_pred cchHhhcCc----hhhhEEEEeCHHHHHHHHH----------------------------hcCCCC--C-CHH-HHHHHH
Confidence 87 877532 3346999999887765410 000011 1 111 222222
Q ss_pred HHHHcCcch---HHHHHHHHHHHHHHHHHHHhcCCCE-EEcCCCCcceEEEecCCHHHHHHHHHHcCceeee-ec----C
Q 001990 434 YAVYHGPEG---LKTIAQRVHGLAGTFALGLKKLGTV-EVQGLPFFDTVKVKCADAHAIASAAYKIEMNLRV-VD----S 504 (985)
Q Consensus 434 y~~~~g~~G---l~~i~~~~~~~a~~l~~~L~~~g~~-~~~~~~~~~~~~i~~~~~~~l~~~L~~~Gi~~~~-~~----~ 504 (985)
..+...+ +++..++..++.+++.+.|+++|++ .+... ...-+.++.+++.++.++|.++||.++. .. +
T Consensus 255 --~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~L~~~gI~v~~~g~~~~~~ 331 (356)
T 1fg7_A 255 --QALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDS-ETNYILARFKASSAVFKSLWDQGIILRDQNKQPSLS 331 (356)
T ss_dssp --HHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCC-SSSEEEEEETTHHHHHHHHHHTTEECEECTTSTTCT
T ss_pred --HHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCC-CCeEEEEECCCHHHHHHHHHHCCEEEEECCCCCCCC
Confidence 2333334 6778888889999999999988654 33322 1222344554577899999999998876 21 3
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 505 NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 505 ~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+.+|+|++ +++|+++++++|+.
T Consensus 332 ~~iRis~~---~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 332 GCLRITVG---TREESQRVIDALRA 353 (356)
T ss_dssp TEEEEECC---CHHHHHHHHHHHHT
T ss_pred CeEEEEeC---CHHHHHHHHHHHHh
Confidence 68999987 68999999999975
No 323
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.65 E-value=3.1e-14 Score=164.12 Aligned_cols=269 Identities=13% Similarity=0.090 Sum_probs=179.7
Q ss_pred HHHHHHHh----hCC--CCc-ceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC-
Q 001990 216 FQTMIADL----TGL--PMS-NASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD- 287 (985)
Q Consensus 216 ~q~~ia~L----~g~--~~~-~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~- 287 (985)
+++.+|++ .|. ++. ++.+++|+|.+++.++.++. ++||+|++++..|+++...++. .|.+++.++
T Consensus 67 l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~---~~gd~Vl~~~~~y~~~~~~~~~----~g~~~~~v~~ 139 (411)
T 2o0r_A 67 LRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLV---EPGSEVLLIEPFYDSYSPVVAM----AGAHRVTVPL 139 (411)
T ss_dssp HHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHC---CTTCEEEEEESCCTTHHHHHHH----TTCEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhc---CCCCEEEEeCCCcHhHHHHHHH----cCCEEEEeec
Confidence 34445554 474 455 78888999988888776652 2789999999999998877643 466666554
Q ss_pred ----------chhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEeccccccCCC-----C----
Q 001990 288 ----------LKDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILK-----P---- 343 (985)
Q Consensus 288 ----------~~~l~~-l~~~t~~V~v~~p-n~~G~i~d---l~~I~~~a~~~galliV~a~~~alg~l~-----~---- 343 (985)
+++|++ +++++++|++++| |++|.+.+ +++|+++|+++|+++++|. ..+.+... +
T Consensus 140 ~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~g~~~~~~~~~ 218 (411)
T 2o0r_A 140 VPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDE-VYEHLVFDHARHLPLAGF 218 (411)
T ss_dssp EEETTEEECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC-TTTTCBCTTCCCCCGGGS
T ss_pred cccccCCCCCHHHHHHhhccCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEc-cccccccCCCCCcChhhc
Confidence 345665 7788999999988 78999865 6999999999999999952 33322111 1
Q ss_pred CCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccc
Q 001990 344 PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT 422 (985)
Q Consensus 344 p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t 422 (985)
+..++.|++++|. |.|+.| |--+|++++++++++.+.... . ....+.|.
T Consensus 219 ~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~l~~~~----------~--------------~~~~~~~~-- 268 (411)
T 2o0r_A 219 DGMAERTITISSAAKMFNCT----GWKIGWACGPAELIAGVRAAK----------Q--------------YLSYVGGA-- 268 (411)
T ss_dssp TTTGGGEEEEEEHHHHTTCT----TTCEEEEECCHHHHHHHHHHH----------H--------------HHTSCCCT--
T ss_pred cCCCCCEEEEeechhhcCCc----cceEEEEeeCHHHHHHHHHHH----------h--------------hccCCCCh--
Confidence 1236889999998 876522 223799999888776541100 0 00011111
Q ss_pred hhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecC-----CHHHHHHHHH-HcC
Q 001990 423 AQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA-----DAHAIASAAY-KIE 496 (985)
Q Consensus 423 ~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~-----~~~~l~~~L~-~~G 496 (985)
....++.+++ . .+.+.++++.++..++.+++.+.|+++| +++.......-+.+..+ +..++.++|. ++|
T Consensus 269 -~~~~a~~~~l--~-~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~g 343 (411)
T 2o0r_A 269 -PFQPAVALAL--D-TEDAWVAALRNSLRARRDRLAAGLTEIG-FAVHDSYGTYFLCADPRPLGYDDSTEFCAALPEKVG 343 (411)
T ss_dssp -THHHHHHHHH--H-HCHHHHHHHHHHHHHHHHHHHHHHHHHT-CEECCCCBSSEEEEECGGGTCCCHHHHHHHHHHHHS
T ss_pred -HHHHHHHHHH--h-CChHHHHHHHHHHHHHHHHHHHHHHHcC-CEecCCCeeEEEEEecCCCCCCCHHHHHHHHHHhCC
Confidence 1222222322 2 2366788899999999999999999886 88764321112334433 2678888886 579
Q ss_pred ceeeee-----------------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 497 MNLRVV-----------------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 497 i~~~~~-----------------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
|.+... .++.+|+++. ++++|++++++.|..
T Consensus 344 i~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~ 391 (411)
T 2o0r_A 344 VAAIPMSAFCDPAAGQASQQADVWNHLVRFTFC--KRDDTLDEAIRRLSV 391 (411)
T ss_dssp EECEEGGGGSCCC--------CCGGGCEEEECC--SCHHHHHHHHHHHGG
T ss_pred EEEcChhhhCCCccccccccccCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 987431 1367999986 489999999999974
No 324
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.65 E-value=1.4e-14 Score=166.43 Aligned_cols=278 Identities=13% Similarity=0.057 Sum_probs=182.6
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~---- 288 (985)
..++++.+|+++|.+ ++.++.+||.+++.++.+++.. +||+|+++...|+++...++. .|++++.++.
T Consensus 65 ~~~l~~~la~~~~~~--~~v~~~~Gt~a~~~~l~~~~~~--~gd~vl~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~ 136 (399)
T 2oga_A 65 LEGFEAEFAAYCETD--HAVGVNSGMDALQLALRGLGIG--PGDEVIVPSHTYIASWLAVSA----TGATPVPVEPHEDH 136 (399)
T ss_dssp HHHHHHHHHHHTTSS--EEEEESCHHHHHHHHHHHTTCC--TTCEEEEESSSCTHHHHHHHH----TTCEEEEECBCSSS
T ss_pred HHHHHHHHHHHHCCC--eEEEecCHHHHHHHHHHHhCCC--CcCEEEECCCccHHHHHHHHH----CCCEEEEEecCCCC
Confidence 456778999999987 4667888898888777665333 789999999999998887653 5888887754
Q ss_pred -----hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCCCCccc--ceEEEecC---c
Q 001990 289 -----KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELG--ADIVVGSA---Q 357 (985)
Q Consensus 289 -----~~l~~-l~~~t~~V~v~~pn~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~p~~~G--aDi~v~s~---k 357 (985)
+++++ +++++++|+++ |.+|.+.|+++|.++|+++|+++++| +..+.+.......++ .|++++|. |
T Consensus 137 ~~~d~~~l~~~i~~~~~~v~~~--n~tG~~~~l~~i~~l~~~~~~~li~D-ea~~~g~~~~~~~~~~~~di~~~S~~~sK 213 (399)
T 2oga_A 137 PTLDPLLVEKAITPRTRALLPV--HLYGHPADMDALRELADRHGLHIVED-AAQAHGARYRGRRIGAGSSVAAFSFYPGK 213 (399)
T ss_dssp SSBCHHHHHHHCCTTEEEECCB--CGGGCCCCHHHHHHHHHHHTCEECEE-CTTCTTCEETTEETTCTTCEEEEECCTTS
T ss_pred CCcCHHHHHHhcCCCCeEEEEe--CCcCCccCHHHHHHHHHHcCCEEEEE-CcccccCccCCeecccccCEEEEeCCCCc
Confidence 34555 77789988865 45899999999999999999999995 344544322222344 69999995 7
Q ss_pred cccccCCCCCCceEEEEEc-hhhHhcCCCce-eeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHH
Q 001990 358 RFGVPMGYGGPHAAFLATS-QEYKRMMPGRI-VGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYA 435 (985)
Q Consensus 358 ~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~-vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~ 435 (985)
.|+.| | ..|++.++ +++.+.+.... .|+. ..|.. ...++..-.++....+..+++
T Consensus 214 ~~~~~---G--~~g~~~~~~~~~~~~l~~~~~~g~~------~~~~~----------~~~g~~~~~~~~~~a~~~~~l-- 270 (399)
T 2oga_A 214 NLGCF---G--DGGAVVTGDPELAERLRMLRNYGSR------QKYSH----------ETKGTNSRLDEMQAAVLRIRL-- 270 (399)
T ss_dssp SSCCS---S--CCEEEEESCHHHHHHHHHHHBTTCS------STTCC----------CSCCCBCCCCHHHHHHHHHHH--
T ss_pred cCCcC---C--ceEEEEeCCHHHHHHHHHHHhcCcc------ccccc----------cccccCCCcCHHHHHHHHHHH--
Confidence 66532 2 24677775 67665542111 1110 00100 001111111111111111111
Q ss_pred HHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCC-C----cceEEEecCCHHHHHHHHHHcCceeeeec-------
Q 001990 436 VYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-F----FDTVKVKCADAHAIASAAYKIEMNLRVVD------- 503 (985)
Q Consensus 436 ~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-~----~~~~~i~~~~~~~l~~~L~~~Gi~~~~~~------- 503 (985)
+.++++.++..++++++++.|+++.++++...+ . +..+.+......++.+.|.++||.++...
T Consensus 271 -----~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~ 345 (399)
T 2oga_A 271 -----AHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLS 345 (399)
T ss_dssp -----HTHHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEECSSHHHHHHHHHHTTBCCBCSCSSCGGGS
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEECCCHHHHHHHHHHCCCceecCCCCccccc
Confidence 235667788888999999999987337764221 1 11244433347889999999999875421
Q ss_pred --------------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 504 --------------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 504 --------------------~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.+.+|++++.++|++|+++++++|..
T Consensus 346 ~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~ 391 (399)
T 2oga_A 346 PAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVRE 391 (399)
T ss_dssp HHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHH
T ss_pred hhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHH
Confidence 15699999999999999999999974
No 325
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.65 E-value=3.6e-14 Score=164.52 Aligned_cols=264 Identities=11% Similarity=0.009 Sum_probs=177.7
Q ss_pred HHHHhhCC--CCc-ceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-------
Q 001990 219 MIADLTGL--PMS-NASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL------- 288 (985)
Q Consensus 219 ~ia~L~g~--~~~-~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~------- 288 (985)
.+.+..|. ++. ++.+++|+|.++++++.++. ++||+|+++...|+.+...++. .|.+++.++.
T Consensus 89 ~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~---~~gd~Vl~~~p~y~~~~~~~~~----~g~~~~~~~~~~~~~~~ 161 (429)
T 1yiz_A 89 LYSQLVDRTINPMTEVLVTVGAYEALYATIQGHV---DEGDEVIIIEPFFDCYEPMVKA----AGGIPRFIPLKPNKTGG 161 (429)
T ss_dssp HHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC---CTTCEEEEEESCCTTHHHHHHH----TTCEEEEEECBCCCSSS
T ss_pred HHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhc---CCCCEEEEcCCCchhHHHHHHH----cCCEEEEEeCCcccccc
Confidence 33333474 455 78888999988888776652 2789999999999998877653 4777766542
Q ss_pred -----------hhhhc-cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEeccccc----cC----CC-C
Q 001990 289 -----------KDIDY-KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLAL----TI----LK-P 343 (985)
Q Consensus 289 -----------~~l~~-l~~~t~~V~v~~p-n~~G~i~---dl~~I~~~a~~~galliV~a~~~al----g~----l~-~ 343 (985)
++|++ +++++++|++++| |.+|.+. ++++|+++|+++|+++++|. ..+. |. +. -
T Consensus 162 ~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~g~~~~~~~~~ 240 (429)
T 1yiz_A 162 TISSADWVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDE-VYEHMVFEPFEHIRICTL 240 (429)
T ss_dssp SEEGGGCBCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC-TTTTCBCTTSCCCCGGGS
T ss_pred cccccCcccCHHHHHHHhccCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEec-cccccccCCCCCcChhhc
Confidence 34555 7788999999988 6799887 59999999999999999952 3221 10 10 1
Q ss_pred CCcccceEEEecC-ccccccCCCCCCc--eEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCc
Q 001990 344 PGELGADIVVGSA-QRFGVPMGYGGPH--AAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNI 420 (985)
Q Consensus 344 p~~~GaDi~v~s~-k~lg~P~~~GGP~--~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni 420 (985)
+..++.|++++|. |.|+. || +|++++++++++.+... +.....
T Consensus 241 ~~~~~~~~~~~s~sK~~~~------~G~r~G~~~~~~~~~~~l~~~----------------------------~~~~~~ 286 (429)
T 1yiz_A 241 PGMWERTITIGSAGKTFSL------TGWKIGWAYGPEALLKNLQMV----------------------------HQNCVY 286 (429)
T ss_dssp TTTGGGEEEEEEHHHHHTC------GGGCCEEEESCHHHHHHHHHH----------------------------HHTTTC
T ss_pred cCCcCceEEEecchhccCC------CCcceEEEEeCHHHHHHHHHH----------------------------Hhhccc
Confidence 1257899999998 87752 34 79999998877654100 000111
Q ss_pred cchhHH-HHHHHHHHHHH----cC--cchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecC----------
Q 001990 421 CTAQAL-LANMAAMYAVY----HG--PEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA---------- 483 (985)
Q Consensus 421 ~t~~~l-~a~~aa~y~~~----~g--~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~---------- 483 (985)
+.+... .++.++ +.. ++ .+.++++.++..++.+++.+.|+++| +++.......-+.+.++
T Consensus 287 ~~~~~~~~a~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~ 363 (429)
T 1yiz_A 287 TCATPIQEAIAVG--FETELKRLKSPECYFNSISGELMAKRDYMASFLAEVG-MNPTVPQGGYFMVADWSSLDSKVDLTQ 363 (429)
T ss_dssp CCCHHHHHHHHHH--HHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHT-CEEEECSBSSEEEEECCSSCTTTTCCS
T ss_pred CCChHHHHHHHHH--HhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCC-CcccCCCcceEEEEEcccccccccccc
Confidence 111222 222222 232 13 55688899999999999999999886 77653211112333332
Q ss_pred ----C-HHHHHHHHH-HcCceeeee---c--------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 484 ----D-AHAIASAAY-KIEMNLRVV---D--------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 484 ----~-~~~l~~~L~-~~Gi~~~~~---~--------~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
. ..++.++|. ++||.+... . ++.+|+++. +++++|+++++.|..
T Consensus 364 ~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~i~~~l~~l~~ 424 (429)
T 1yiz_A 364 ETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KKDENLQKAAEILRK 424 (429)
T ss_dssp SSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 2 567888886 789987532 1 578999998 489999999999874
No 326
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.65 E-value=4.7e-15 Score=170.61 Aligned_cols=271 Identities=16% Similarity=0.128 Sum_probs=182.5
Q ss_pred HHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHh-hcCCCeEEEEeCch---
Q 001990 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITR-ADGFDIKVVVSDLK--- 289 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~-a~~~gi~v~~~~~~--- 289 (985)
.++++.+|++.|.+. +.++.+|++++++ ++++ . ++||+|++++..|+++...+... .+..|++++.++.+
T Consensus 70 ~~l~~~la~l~g~~~--~~~~~sG~~Ai~~-~~~l-~--~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~ 143 (400)
T 3nmy_A 70 FAYERCVAALEGGTR--AFAFASGMAATST-VMEL-L--DAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTDPA 143 (400)
T ss_dssp HHHHHHHHHHHTCSE--EEEESSHHHHHHH-HHTT-S--CTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTTSHH
T ss_pred HHHHHHHHHHhCCCC--EEEecCHHHHHHH-HHHH-c--CCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCCCHH
Confidence 457789999999873 6678888888887 3433 2 27899999999999888887665 55679999999764
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001990 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~p~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ +++++++|++++| |++|.+.|+++|+++||++|++++|| +.++.+....|.++|+|++++|. |.|++| |
T Consensus 144 ~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livD-e~~~~~~~~~~~~~g~div~~S~sK~l~g~---g 219 (400)
T 3nmy_A 144 AFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVD-NTFASPMLQRPLSLGADLVVHSATKYLNGH---S 219 (400)
T ss_dssp HHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEE-CTTTHHHHCCGGGGTCSEEEEETTTTTTCS---S
T ss_pred HHHHHhccCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEE-CCCcccccCChhhcCCcEEEecCccccCCC---C
Confidence 4555 7889999999998 68999999999999999999999995 45565555667789999999998 888654 1
Q ss_pred CCceE-EEEE-chhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHH
Q 001990 367 GPHAA-FLAT-SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLK 444 (985)
Q Consensus 367 GP~~G-~l~~-~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~ 444 (985)
.+-.| ++.+ ++++.+++.. .++.-+ +.. .++. + |+...+.+.++
T Consensus 220 ~~~gG~~vv~~~~~~~~~l~~-------------------------~~~~~g--~~~--~~~~---a--~~~l~~l~~l~ 265 (400)
T 3nmy_A 220 DMVGGIAVVGDNAELAEQMAF-------------------------LQNSIG--GVQ--GPFD---S--FLALRGLKTLP 265 (400)
T ss_dssp SCCCEEEEECSCHHHHHHHHH-------------------------HHHHHC--CBC--CHHH---H--HHHHHHHTTHH
T ss_pred CcceeEEEEeCCHHHHHHHHH-------------------------HHHhcC--CCC--CHHH---H--HHHHHhHhHHH
Confidence 12235 3433 4555544310 000001 000 1221 1 11222335567
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEc--CC----C-----------CcceEEEecCC----HHHHHHHHHHcCceee---
Q 001990 445 TIAQRVHGLAGTFALGLKKLGTVEVQ--GL----P-----------FFDTVKVKCAD----AHAIASAAYKIEMNLR--- 500 (985)
Q Consensus 445 ~i~~~~~~~a~~l~~~L~~~g~~~~~--~~----~-----------~~~~~~i~~~~----~~~l~~~L~~~Gi~~~--- 500 (985)
...++..+++.++.+.|++.+.++-+ .. + ...-+.|.+++ +..+.+.|.-.++-++
T Consensus 266 ~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~ 345 (400)
T 3nmy_A 266 LRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTELFTLAESLGG 345 (400)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHHCSSSEECSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHcCCcceEecCCCC
Confidence 77788899999999999987545532 11 1 11246777765 2333333332221110
Q ss_pred ------------------------eecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001990 501 ------------------------VVDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 501 ------------------------~~~~~~lris~~~~~t~edid~ll~~l~ 528 (985)
.+.++.+|+|++..++++.++.|.++|.
T Consensus 346 ~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~~~dli~dl~~al~ 397 (400)
T 3nmy_A 346 VESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGDLRGDLERALV 397 (400)
T ss_dssp SSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred CcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHHHHHHHHHh
Confidence 0124789999999999998999888886
No 327
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.65 E-value=7.3e-15 Score=170.39 Aligned_cols=144 Identities=15% Similarity=0.214 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHH----HHHhcCcEEEEEe
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPA----TAAMCGMKIVSVG 708 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~----~~~~~G~~v~~v~ 708 (985)
...++++++++++|.+.. +.+++|++++.+++.++. .++++||+++..|+.... .+...|++++.++
T Consensus 83 ~~~~le~~lA~l~g~~~~-v~~~sG~~Ai~~al~al~--------~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~ 153 (430)
T 3ri6_A 83 TVEDLEQRLKNLTGALGV-LALGSGMAAISTAILTLA--------RAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVD 153 (430)
T ss_dssp HHHHHHHHHHHHHTCSEE-EEESCHHHHHHHHHHHHC--------CTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHCCCcE-EEECCHHHHHHHHHHHHh--------CCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeC
Confidence 466899999999998874 566778776644444331 477899999887765544 4567899999998
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCCCcEE
Q 001990 709 TDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADVC 787 (985)
Q Consensus 709 ~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g~Di~ 787 (985)
.+ |+++|+++++ ++|++|++++| |++|.+. |+++|+++|+++|+++++|+++..+. +..+..+|+|++
T Consensus 154 ~~-----d~~~l~~ai~---~~t~~v~~e~p~NptG~~~-dl~~i~~la~~~g~~livD~a~~~~~--~~~~~~~g~div 222 (430)
T 3ri6_A 154 VM-----DSLAVEHACD---ETTKLLFLETISNPQLQVA-DLEALSKVVHAKGIPLVVDTTMTPPY--LLEAKRLGVDIE 222 (430)
T ss_dssp TT-----CHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHTTTCCEEEECTTSCTT--TCCGGGGTCSEE
T ss_pred CC-----CHHHHHHhhC---CCCeEEEEECCCCCCCeec-CHHHHHHHHHHcCCEEEEECCCcccc--cCChHHcCCEEE
Confidence 75 8999999997 79999999999 6799998 89999999999999999999986432 356677899999
Q ss_pred EeCCccccc
Q 001990 788 HLNLHKTFC 796 (985)
Q Consensus 788 ~~s~hKtl~ 796 (985)
+.|++|+|+
T Consensus 223 ~~S~sK~l~ 231 (430)
T 3ri6_A 223 VLSSTKFIS 231 (430)
T ss_dssp EEECCCEEE
T ss_pred EECCccccc
Confidence 999999995
No 328
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.65 E-value=9.3e-16 Score=175.73 Aligned_cols=274 Identities=11% Similarity=0.092 Sum_probs=165.2
Q ss_pred eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeC--CCCCCCCHHHHHHHHHhcCC
Q 001990 652 LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVGT--DAKGNINIEELRKAAEANRD 729 (985)
Q Consensus 652 ~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~--~~~g~iDle~L~~~i~~~~~ 729 (985)
+++++|++++..++.....+ .++++|+++.+.|..+...++..|.+++.+|. ++++.+|+++|+++++++++
T Consensus 99 ~~t~g~~~a~~~~~~~~~~~------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 172 (397)
T 3fsl_A 99 IQTLGGSGALKVGADFLKRY------FPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQA 172 (397)
T ss_dssp EEESHHHHHHHHHHHHHHHH------CTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCT
T ss_pred EEcCCcHHHHHHHHHHHHhc------CCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCC
Confidence 55666666654332111111 36788999988776666667889999999998 45688999999999986656
Q ss_pred CeEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccccCCCC--------CCcCCCcEEEeCCccccccc
Q 001990 730 NLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVGLTS--------PGYIGADVCHLNLHKTFCIP 798 (985)
Q Consensus 730 ~t~~Vvi~~p-n~~G~i~--~di~eI~~la~~~g~lliVD~a~~~~~~g~~~--------~g~~g~Di~~~s~hKtl~~p 798 (985)
+++++++++| |++|.+. .++++|+++|+++|+++++|+++.....+... +...+..+++.|++|+|+.
T Consensus 173 ~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~- 251 (397)
T 3fsl_A 173 GSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSL- 251 (397)
T ss_dssp TCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTC-
T ss_pred CCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccC-
Confidence 7888888888 5789884 15789999999999999999987422111000 0122345778888898854
Q ss_pred CCCCCCcceeeee---cccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHh-----chhhHHH
Q 001990 799 HGGGGPGMGPIGV---KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMM-----GSKGLTE 870 (985)
Q Consensus 799 ~g~GGPg~G~l~~---~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~l-----g~~gl~~ 870 (985)
.|.++|++++ ++++...+....... ....+.+.+. .++ .++..++..- ..+.+.+
T Consensus 252 ---~G~riG~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~--~~~----~~~~~~l~~~~l~~~~~~~~~~ 314 (397)
T 3fsl_A 252 ---YGERVGGLSVMCEDAEAAGRVLGQLKAT--------VRRNYSSPPN--FGA----QVVAAVLNDEALKASWLKEVEE 314 (397)
T ss_dssp ---GGGCCEEEEEECSSHHHHHHHHHHHHHH--------HHTTTSSCCS--HHH----HHHHHHHTSHHHHHHHHHHHHH
T ss_pred ---cCCCeeEEEEecCCHHHHHHHHHHHHHH--------HHhccCCCCH--HHH----HHHHHHhcCHHHHHHHHHHHHH
Confidence 3677899875 223322110000000 0001111111 111 1111112110 1234556
Q ss_pred HHHHHHHHHHHHHHHHhccC---CeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEE
Q 001990 871 ASKIAILNANYMAKRLEKHY---PILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMI 947 (985)
Q Consensus 871 ~~~~~~~~a~~l~~~L~~~~---~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lri 947 (985)
..++..++++++.+.|++.. .+.+..+++..+ +.+ +.+...+.+.|.++||.+.. +. |+
T Consensus 315 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~--~~~---------~~~~~~~~~~l~~~gi~v~~------g~-Ri 376 (397)
T 3fsl_A 315 MRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMF--SYT---------GLSAAQVDRLREEFGVYLIA------SG-RM 376 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSCCTHHHHCCSSE--EEC---------CCCHHHHHHHHHTTCEECCT------TC-EE
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCceeecCCceEE--Eec---------CCCHHHHHHHHHhCCEEECC------CC-eE
Confidence 66677888899999998631 221111111111 111 24566777788889999852 22 88
Q ss_pred eccCCCCHHhhchHHHHHHHHHHH
Q 001990 948 EPTESESKVCHNREDLFFQILLSL 971 (985)
Q Consensus 948 s~t~~~t~eeId~~~~~i~aL~~i 971 (985)
+++. .+++||+ +++++|+++
T Consensus 377 s~~~-~~~~~i~---~~~~~l~~~ 396 (397)
T 3fsl_A 377 CVAG-LNTANVQ---RVAKAFAAV 396 (397)
T ss_dssp EGGG-CCTTTHH---HHHHHHHHH
T ss_pred EEEe-cCHhhHH---HHHHHHHhh
Confidence 8864 3668899 999999865
No 329
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.64 E-value=1.7e-14 Score=166.14 Aligned_cols=269 Identities=13% Similarity=0.160 Sum_probs=179.9
Q ss_pred HHHHHHHhh------CCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-
Q 001990 216 FQTMIADLT------GLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL- 288 (985)
Q Consensus 216 ~q~~ia~L~------g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~- 288 (985)
+++.+|+++ +.++.++.+++|+|.+++.++.++ .. +||+|+++...|+++...++. .|++++.++.
T Consensus 83 l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l-~~--~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~v~~~ 155 (406)
T 1xi9_A 83 LRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGAL-LD--PGDEILVPGPSYPPYTGLVKF----YGGKPVEYRTI 155 (406)
T ss_dssp HHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH-CC--TTCEEEEEESCCHHHHHHHHH----TTCEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHh-CC--CCCEEEEcCCCCccHHHHHHH----cCCEEEEeecC
Confidence 445555555 345668888999998888877665 22 789999999999998887653 4777766643
Q ss_pred ---------hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEeccccccCCC----CCCc--cc
Q 001990 289 ---------KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILK----PPGE--LG 348 (985)
Q Consensus 289 ---------~~l~~-l~~~t~~V~v~~p-n~~G~i~d---l~~I~~~a~~~galliV~a~~~alg~l~----~p~~--~G 348 (985)
++|++ +++++++|++++| |++|.+.+ +++|+++|+++|+++++|. ..+.+... +... .+
T Consensus 156 ~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~ 234 (406)
T 1xi9_A 156 EEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDE-IYDLMTYEGEHISPGSLTKD 234 (406)
T ss_dssp GGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEEC-TTTTCBSSSCCCCHHHHCSS
T ss_pred CCcCCcCCHHHHHHhhCcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEc-CccccccCCCCCCHHHcCCC
Confidence 34555 7778999999988 68998864 9999999999999999952 33322211 1122 36
Q ss_pred c-eEEEecC-ccccccCCCCCCceEEEE--Ech----hhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCc
Q 001990 349 A-DIVVGSA-QRFGVPMGYGGPHAAFLA--TSQ----EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNI 420 (985)
Q Consensus 349 a-Di~v~s~-k~lg~P~~~GGP~~G~l~--~~~----~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni 420 (985)
. |++++|. |.|+.| |..+|+++ +++ ++++.+.. .++...+.|.
T Consensus 235 ~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~~l~~~l~~-------------------------~~~~~~~~~~ 285 (406)
T 1xi9_A 235 VPVIVMNGLSKVYFAT----GWRLGYMYFVDPENKLSEVREAIDR-------------------------LARIRLCPNT 285 (406)
T ss_dssp SCEEEEEESTTTTCCG----GGCCEEEEEECTTCTTHHHHHHHHH-------------------------HHHHTCCSCS
T ss_pred ceEEEEeccccccCCC----ccEEEEEEEecCchhHHHHHHHHHH-------------------------HHHhhcCCCH
Confidence 6 8999997 877522 22368988 777 66655410 0000011121
Q ss_pred cchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCC--CcceEEEec--CC-HHHHHHHHH-H
Q 001990 421 CTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP--FFDTVKVKC--AD-AHAIASAAY-K 494 (985)
Q Consensus 421 ~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~--~~~~~~i~~--~~-~~~l~~~L~-~ 494 (985)
....++.++ +. .+.++++++.++..++.+++.+.|++++++++..+. .+--+.+.. .. ..++.+.|. +
T Consensus 286 ---~~~~a~~~~--l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 359 (406)
T 1xi9_A 286 ---PAQFAAIAG--LT-GPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHN 359 (406)
T ss_dssp ---HHHHHHHHH--HH-SCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECSCSCSSHHHHHHHHHHH
T ss_pred ---HHHHHHHHH--Hh-CCcHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCeeEEEEEecCccCCCCHHHHHHHHHHh
Confidence 122222222 22 345668889999999999999999988338876421 111112221 12 788999887 8
Q ss_pred cCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 495 IEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 495 ~Gi~~~~~------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+||.+... .++.+|++++ +++++++++++.|..
T Consensus 360 ~gi~v~~g~~f~~~~~~~lRis~~--~~~~~i~~~~~~l~~ 398 (406)
T 1xi9_A 360 AHVLFVHGSGFGEYGAGHFRAVFL--PPIEILEEAMDRFEK 398 (406)
T ss_dssp HCEECEEGGGGCGGGTTBEEEECC--SCHHHHHHHHHHHHH
T ss_pred CCEEEeCchhcCCCCCCEEEEEec--CCHHHHHHHHHHHHH
Confidence 89987542 1578999998 899999999999874
No 330
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.64 E-value=2.2e-15 Score=173.64 Aligned_cols=290 Identities=11% Similarity=0.037 Sum_probs=177.7
Q ss_pred HHHHHHHHHHh-CC-----Ccc-cee--cChHHHHHHHHHHHHHHHHHhcCCCCC-----CEEEEcCCCCCCcHHHHHhc
Q 001990 635 NNLGEWLCTIT-GF-----DSF-SLQ--PNAGAAGEYAGLMVIRAYHKARGDHHR-----NVCIIPVSAHGTNPATAAMC 700 (985)
Q Consensus 635 ~el~~~la~l~-G~-----~~~-~~~--~~sGa~g~~a~l~air~~~~~~g~~~~-----~~Vlv~~~~Hg~~~~~~~~~ 700 (985)
.++++.+++++ +. +.. .++ +++|+++++.++...+.+ .++ ++|+++...|..+...++..
T Consensus 77 ~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~------~~g~~~~~d~Vl~~~p~y~~~~~~~~~~ 150 (412)
T 1ajs_A 77 AEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARW------YNGTNNKDTPVYVSSPTWENHNGVFTTA 150 (412)
T ss_dssp HHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH------SSSSSCCCSCEEEEESCCTHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHh------CcCcCCCCCeEEEcCCCcHHHHHHHHHc
Confidence 45677777776 43 222 344 666666664443222221 245 78999888777777777889
Q ss_pred CcE-EEEEeCC--CCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccc-cc
Q 001990 701 GMK-IVSVGTD--AKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMN-AQ 773 (985)
Q Consensus 701 G~~-v~~v~~~--~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~--~di~eI~~la~~~g~lliVD~a~~~-~~ 773 (985)
|++ ++.++.+ +++.+|+++|+++++++++++++|++++| |++|.+. .++++|+++|+++|+++++|+++.. +.
T Consensus 151 g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~ 230 (412)
T 1ajs_A 151 GFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFAS 230 (412)
T ss_dssp TCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTT
T ss_pred CCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccC
Confidence 999 9999984 45779999999999865457888888998 5689874 2578999999999999999998631 11
Q ss_pred cC----CCCCCcC--CCc--EEEeCCcccccccCCCCCCcceeeee---ccc----ccCcCCCCccccCCCCCCCCCCCC
Q 001990 774 VG----LTSPGYI--GAD--VCHLNLHKTFCIPHGGGGPGMGPIGV---KKH----LAPFLPSHPVVSTGGIPAPEKSQP 838 (985)
Q Consensus 774 ~g----~~~~g~~--g~D--i~~~s~hKtl~~p~g~GGPg~G~l~~---~~~----l~~~lpg~~~g~~~~~~~~~~~~~ 838 (985)
.+ ......+ ..| +++.|+||+|+. .|.++|++++ +++ +...+.. ... ..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~----~G~riG~~~~~~~~~~~~~~~~~~~~~-~~~-----------~~ 294 (412)
T 1ajs_A 231 GNLEKDAWAIRYFVSEGFELFCAQSFSKNFGL----YNERVGNLTVVAKEPDSILRVLSQMQK-IVR-----------VT 294 (412)
T ss_dssp SCHHHHTHHHHHHHHTTCCEEEEEECTTTSCC----GGGCEEEEEEECSSHHHHHHHHHHHHH-HHH-----------TT
T ss_pred CcccccchHHHHHhccCCcEEEEEecccccCC----CCcceEEEEEecCCHHHHHHHHHHHHH-HHh-----------cc
Confidence 11 0000001 123 778899998843 2556899998 665 3222211 000 00
Q ss_pred CCCcccccchhhhHHHHHHHHHHHhc-----hhhHHHHHHHHHHHHHHHHHHHhccC---CeeEcCCCCceeEEEEEEec
Q 001990 839 LGTIAAAPWGSALILPISYTYIAMMG-----SKGLTEASKIAILNANYMAKRLEKHY---PILFRGVNGTVAHEFIVDLR 910 (985)
Q Consensus 839 t~~i~s~~~g~~~~~~~A~a~l~~lg-----~~gl~~~~~~~~~~a~~l~~~L~~~~---~i~~~g~~~~~~~~~vv~~~ 910 (985)
+... + .....++.++|.... .+.+.+..++..++++++.+.|++.. .+.+..+.+..+ ++ .
T Consensus 295 ~~~~--~----~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~---~~-~- 363 (412)
T 1ajs_A 295 WSNP--P----AQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMF---SF-T- 363 (412)
T ss_dssp TSSC--C----SHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSE---EE-C-
T ss_pred cCCC--C----hHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceE---EE-e-
Confidence 0111 1 111122223333221 23455666777888899999998721 121111111111 11 1
Q ss_pred CccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 911 GLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 911 ~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
+.+...+...|.++||.+.. .+|++++. .|++|++ +++++|++++++
T Consensus 364 ------~~~~~~~~~~l~~~gv~v~~-------~~Ris~~~-~~~~~i~---~~~~~l~~~l~~ 410 (412)
T 1ajs_A 364 ------GLNPKQVEYLINQKHIYLLP-------SGRINMCG-LTTKNLD---YVATSIHEAVTK 410 (412)
T ss_dssp ------CCCHHHHHHHHHTTCEECCT-------TSEEEGGG-CCTTTHH---HHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHhCCEEecC-------CcEEEeee-CCHHHHH---HHHHHHHHHHHh
Confidence 23445555666788998742 26999884 4899999 999999988764
No 331
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.64 E-value=1.7e-14 Score=168.01 Aligned_cols=298 Identities=13% Similarity=0.062 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhh------hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001990 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN------IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~------~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~ 285 (985)
...++++.+|+++|.+ ++.++.+||.+++.++.++. ...++||+|+++...|+++...++. .|++++.
T Consensus 63 ~~~~l~~~la~~~g~~--~~i~~~sGt~a~~~al~~l~~~~~~~~~~~~gd~Vi~~~~~~~~~~~~~~~----~g~~~~~ 136 (437)
T 3bb8_A 63 FNDAFEKKLGEYLGVP--YVLTTTSGSSANLLALTALTSPKLGVRALKPGDEVITVAAGFPTTVNPTIQ----NGLIPVF 136 (437)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTCGGGGGGSCCTTCEEEECSSSCHHHHHHHHH----TTCEEEE
T ss_pred HHHHHHHHHHHHHCCC--cEEEeCCHHHHHHHHHHHhhhcccccccCCCcCEEEECCCCcHHHHHHHHH----cCCEEEE
Confidence 3567889999999987 47788999988887776652 0013789999999999999988853 5888887
Q ss_pred eCc---------hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCCCCccc--ceEEE
Q 001990 286 SDL---------KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELG--ADIVV 353 (985)
Q Consensus 286 ~~~---------~~l~~-l~~~t~~V~v~~pn~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~p~~~G--aDi~v 353 (985)
++. +++++ ++++|++|++++ +.|...|+++|.++||++|+++++| ...+.|.......+| +|+++
T Consensus 137 v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~--~~g~~~~~~~i~~l~~~~~~~li~D-~a~~~g~~~~~~~~~~~~d~~~ 213 (437)
T 3bb8_A 137 VDVDIPTYNVNASLIEAAVSDKTKAIMIAH--TLGNLFDLAEVRRVADKYNLWLIED-CCDALGSTYDGKMAGTFGDIGT 213 (437)
T ss_dssp CCEETTTTEECGGGHHHHCCTTEEEEEEEC--GGGCCCCHHHHHHHHHHHTCEEEEE-CTTCTTCEETTEETTSSSSEEE
T ss_pred EeccCccCCcCHHHHHHhcCCCCeEEEEeC--CCCChhcHHHHHHHHHHcCCEEEEE-CccccCceECCeecccccCEEE
Confidence 754 34555 778899999875 4677799999999999999999995 344555433333466 89988
Q ss_pred ecC-ccccccCCCCCCceEEEEEchhhHhc-CCC-ceeeee------ecCCCCcceEEecccccccccc-cccCCCc-cc
Q 001990 354 GSA-QRFGVPMGYGGPHAAFLATSQEYKRM-MPG-RIVGVS------IDSSGKPALRVAMQTREQHIRR-DKATSNI-CT 422 (985)
Q Consensus 354 ~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~-lp~-~~vG~s------~d~~g~~~~~l~l~tre~~~rr-e~atsni-~t 422 (985)
.|. |..+.| |+..|+++++++.+.. ++. +-.|.. .+....+.|...+ .....++ +.+|... +.
T Consensus 214 ~s~~~~k~l~----~g~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~ 287 (437)
T 3bb8_A 214 VSFYPAKHIT----MGEGGAVFTQSAELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQL--GSLPFGYDHKYTYSHLGY 287 (437)
T ss_dssp EECSTTSSSC----CSSCEEEEESCHHHHHHHHHHHBTTBCC----------------CC--SCCCTTCCGGGCBCSCCC
T ss_pred EECcCCcCCC----CCCeEEEEeCCHHHHHHHHHHHHhCccccccccccccccccccccc--ccccccccccccccccCc
Confidence 873 333222 2345888888554332 110 000100 0000000011100 1111122 2233211 10
Q ss_pred h---hHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCC-C-----Ccc--eEEEecC---CHHHH
Q 001990 423 A---QALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-P-----FFD--TVKVKCA---DAHAI 488 (985)
Q Consensus 423 ~---~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~-----~~~--~~~i~~~---~~~~l 488 (985)
+ ..+.+.++ + ..+ +.+++..++..+++++++++|+++.++.++.. + ... .+.+..+ ...++
T Consensus 288 ~~~~~~~~aa~~-l--~~l--~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 362 (437)
T 3bb8_A 288 NLKITDMQAACG-L--AQL--ERIEEFVEKRKANFKYLKDALQSCADFIELPEATENSDPSWFGFPITLKEDSGVSRIDL 362 (437)
T ss_dssp BCCCBHHHHHHH-H--HHH--HHHHHHHHHHHHHHHHHHHHGGGGTTTEECCCCCTTEECCCSSEEEEECGGGSSCHHHH
T ss_pred ccCCCHHHHHHH-H--HHH--HHHHHHHHHHHHHHHHHHHHhhccCCccccCCCCCCCceeeEEEEEEECCcCcCcHHHH
Confidence 1 12222111 1 111 23455666668899999999998833665531 1 111 2334433 28899
Q ss_pred HHHHHHcCceeeeec----------------------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 489 ASAAYKIEMNLRVVD----------------------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 489 ~~~L~~~Gi~~~~~~----------------------------~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.+.|.++||.++... .+.+|++++..+|++|+++++++|..
T Consensus 363 ~~~L~~~GI~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~i~~~l~~ 431 (437)
T 3bb8_A 363 VKFLDEAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEE 431 (437)
T ss_dssp HHHHHHTTBCCBCCTTSSGGGSGGGSSCCCEECSCCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCceeccCCcccccCchhhccCccccCCCcHHHHHhcCEEEecCCCCCCHHHHHHHHHHHHH
Confidence 999999999765321 02499999999999999999999974
No 332
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.64 E-value=9.3e-16 Score=181.04 Aligned_cols=292 Identities=11% Similarity=0.017 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCc----ceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHh----hcCCC
Q 001990 209 RLESLLNFQTMIADLTGLPMS----NASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITR----ADGFD 280 (985)
Q Consensus 209 ~l~~i~e~q~~ia~L~g~~~~----~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~----a~~~g 280 (985)
.-+...++++.+++++|.+.. ++ .+.+|+++..++++++ +. +||+|++++..|+++...+... +...|
T Consensus 88 ~~~le~~~~~~~a~~~g~~~~~~~~~V-~~~sGs~an~~~~~al-l~--pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G 163 (483)
T 1rv3_A 88 IDELETLCQKRALQAYGLDPQCWGVNV-QPYSGSPANFAVYTAL-VE--PHGRIMGLDLPDGGHLTHGFMTDKKKISATS 163 (483)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTEEEEC-CCSSHHHHHHHHHHHH-TC--TTCEEEEECGGGTCCGGGCCBCSSCBCSHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcccCceEE-EECCcHHHHHHHHHHh-cC--CCCEEEEecCccCcCcchhhhhcccCccccc
Confidence 345555677999999999863 34 4455556666666665 33 8999999999998876543110 00011
Q ss_pred --eEEEEe---------Cchhhhc-cC-CCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCC-CCC
Q 001990 281 --IKVVVS---------DLKDIDY-KS-GDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPG 345 (985)
Q Consensus 281 --i~v~~~---------~~~~l~~-l~-~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~-~p~ 345 (985)
++++.+ |+++|++ +. +++++|++ ++ |+. .+.|+++|+++|+++|+++++|. .++.|+.. ...
T Consensus 164 ~~~~~v~~~~~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~-ah~~g~~~~~~~ 240 (483)
T 1rv3_A 164 IFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADM-AHISGLVVAGVV 240 (483)
T ss_dssp HHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEEC-TTTHHHHHHTSS
T ss_pred ceEEEEECccccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEc-cchhcccccCCC
Confidence 344433 3356666 65 68999999 65 555 88899999999999999999953 33333211 111
Q ss_pred cc---cceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccc--cccCCC
Q 001990 346 EL---GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR--DKATSN 419 (985)
Q Consensus 346 ~~---GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rr--e~atsn 419 (985)
.+ ++|++++|+ |+|+ ||..|++++++++.+ +. +..|.. ..| .+..+-+...+ ..||++
T Consensus 241 ~~p~~~~div~~s~~K~l~------GprgG~i~~~~~~~~-~~-~~~g~~------~~y--~~~~~~~~~~~~~~~g~~~ 304 (483)
T 1rv3_A 241 PSPFEHCHVVTTTTHKTLR------GCRAGMIFYRRGVRS-VD-PKTGKE------ILY--NLESLINSAVFPGLQGGPH 304 (483)
T ss_dssp CCGGGTCSEEEEESSGGGC------CCSCEEEEEECSBCC---------C------CBC--CHHHHHHHHHTTTTCCSCC
T ss_pred CCCCCCCcEEEecCcccCC------CCCceEEEEcchhhh-hc-cccCcc------hhh--HHHHHhhhhcCCcccCCcc
Confidence 22 799999998 7674 344489999876532 22 111210 001 11000000000 024444
Q ss_pred ccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCC-CCcceEEEecC--C--HHHHHHHHHH
Q 001990 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCA--D--AHAIASAAYK 494 (985)
Q Consensus 420 i~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~i~~~--~--~~~l~~~L~~ 494 (985)
. ..+.++.+++ ......+++++.++..++++++++.|+++| ++++.+ .....+.+.+. + ..++.+.|.+
T Consensus 305 ~---~~iaal~~Al--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~ 378 (483)
T 1rv3_A 305 N---HAIAGVAVAL--KQAMTPEFKEYQRQVVANCRALSAALVELG-YKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEA 378 (483)
T ss_dssp H---HHHHHHHHHH--HHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHH
T ss_pred H---HHHHHHHHHH--HHHhChhHHHHHHHHHHHHHHHHHHHHhcC-CEeccCCCCCceEEEeccCCCCCHHHHHHHHHh
Confidence 3 3444555554 455556889999999999999999999987 998743 21122334432 2 7788899989
Q ss_pred cCceee----ee-----cCCeEEEEeccCCC----HHHHHHHHHHHhC
Q 001990 495 IEMNLR----VV-----DSNTVTASFDETTT----LEDVDKLFIVFAG 529 (985)
Q Consensus 495 ~Gi~~~----~~-----~~~~lris~~~~~t----~edid~ll~~l~~ 529 (985)
.||.+. .. .++.+|+++..++| ++|++++++.|..
T Consensus 379 ~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~ 426 (483)
T 1rv3_A 379 CSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHR 426 (483)
T ss_dssp TTEECEEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCcEEecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHH
Confidence 999876 21 24689999998888 9999999999974
No 333
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.64 E-value=2.1e-14 Score=163.13 Aligned_cols=271 Identities=14% Similarity=0.117 Sum_probs=183.7
Q ss_pred HHHHHHHHhh-CCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-----
Q 001990 215 NFQTMIADLT-GLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----- 288 (985)
Q Consensus 215 e~q~~ia~L~-g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~----- 288 (985)
++++.+|+++ +.++.++.+++|+|.++++++.++. . +||+|+++...|+++...++. .|.+++.++.
T Consensus 67 ~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~-~--~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~v~~~~~~~ 139 (375)
T 3op7_A 67 AFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI-E--PGDHVISLYPTYQQLYDIPKS----LGAEVDLWQIEEENG 139 (375)
T ss_dssp HHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC-C--TTCEEEEEESSCTHHHHHHHH----TTCEEEEEEEEGGGT
T ss_pred HHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc-C--CCCEEEEeCCCchhHHHHHHH----cCCEEEEEeccccCC
Confidence 5778999987 5677789899999999888777652 3 889999999999998877653 5777766543
Q ss_pred -----hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEeccccccCCCC-C---CcccceEEEe
Q 001990 289 -----KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILKP-P---GELGADIVVG 354 (985)
Q Consensus 289 -----~~l~~-l~~~t~~V~v~~p-n~~G~i~d---l~~I~~~a~~~galliV~a~~~alg~l~~-p---~~~GaDi~v~ 354 (985)
+++++ +++++++|++++| |++|.+.| +++|.++|+++|+++++| +..+...... + ..++.+++++
T Consensus 140 ~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~D-e~~~~~~~~~~~~~~~~~~~~i~~~ 218 (375)
T 3op7_A 140 WLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSD-EVYRSFSELDVPSIIEVYDKGIAVN 218 (375)
T ss_dssp TEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEE-CCSCCCSSSCCCCHHHHCTTEEEEE
T ss_pred CCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEE-cccccccccCCCchhhhcCCEEEEe
Confidence 45555 7788999999988 78999999 999999999999999995 2323211111 1 2356678888
Q ss_pred cC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHH
Q 001990 355 SA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 355 s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~ 433 (985)
|. |.++.| |..+|++.+++++.+.+... +.. ..++++ .+...++..
T Consensus 219 s~sK~~~~~----G~r~G~v~~~~~l~~~~~~~--------------------------~~~--~~~~~~-~~~~~~~~~ 265 (375)
T 3op7_A 219 SLSKTYSLP----GIRIGWVAANHQVTDILRDY--------------------------RDY--TMICAG-VFDDLVAQL 265 (375)
T ss_dssp ESSSSSSCG----GGCCEEEECCHHHHHHHTTT--------------------------GGG--TTSCCC-HHHHHHHHH
T ss_pred EChhhcCCc----ccceEEEEeCHHHHHHHHHH--------------------------Hhh--hccCCC-cHHHHHHHH
Confidence 87 887533 23458999888887765210 000 111111 111111111
Q ss_pred HHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCC--CcceEEEecCC-HHHHHHHH-HHcCceeeeec----CC
Q 001990 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP--FFDTVKVKCAD-AHAIASAA-YKIEMNLRVVD----SN 505 (985)
Q Consensus 434 y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~--~~~~~~i~~~~-~~~l~~~L-~~~Gi~~~~~~----~~ 505 (985)
.+. ...+.++++.++..++.+++.+.|++.+++++.... .+.-+.+..+. ..++.++| .++||.+.... ++
T Consensus 266 ~l~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~~~ 344 (375)
T 3op7_A 266 ALA-HYQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQEHGVLLVPGNRFERDG 344 (375)
T ss_dssp HHH-THHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSSCHHHHHHHHHHHHCEECEEGGGGTCTT
T ss_pred HHh-ccHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCCCHHHHHHHHHHhCCEEEeChhhhCCCC
Confidence 122 223446777777788999999999987448776322 22223343333 77888887 57899876432 58
Q ss_pred eEEEEeccCCCHHHHHHHHHHHhC
Q 001990 506 TVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 506 ~lris~~~~~t~edid~ll~~l~~ 529 (985)
.+|++++. +.++++++++.|..
T Consensus 345 ~iRi~~~~--~~~~i~~~l~~l~~ 366 (375)
T 3op7_A 345 YVRLGFAC--EQETLIKGLEKLSQ 366 (375)
T ss_dssp EEEECCCS--CHHHHHHHHHHHHH
T ss_pred eEEEEecC--CHHHHHHHHHHHHH
Confidence 99999875 44899999998874
No 334
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.64 E-value=3.4e-14 Score=163.20 Aligned_cols=293 Identities=12% Similarity=0.004 Sum_probs=188.2
Q ss_pred HHHHHHHHHHHHHhhCCCC-cceee-ccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHH-HHHHhhcCCCeEEEEe
Q 001990 210 LESLLNFQTMIADLTGLPM-SNASL-LDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTID-ICITRADGFDIKVVVS 286 (985)
Q Consensus 210 l~~i~e~q~~ia~L~g~~~-~~~sl-~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~-~~~~~a~~~gi~v~~~ 286 (985)
.+...++++.+++++|.+. .++.+ ++|+|.++++++.++. . +| .++++...|..... ....+ ..|.+++.+
T Consensus 77 ~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~-~--~g-v~~v~~~~~~~~~~~~~~~~--~~g~~~~~v 150 (398)
T 2fyf_A 77 KNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLI-D--KR-SLHLTYGEFSAKFASAVSKN--PFVGEPIII 150 (398)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTC-S--SC-EEEEECSHHHHHHHHHHHHC--TTSCCCEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhc-C--CC-eEEEeCCHHHHHHHHHHHHh--CCCCceEEE
Confidence 4567789999999999974 47777 8999988888777652 2 44 34456666653322 22221 236666666
Q ss_pred Cchh--h-hc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCCCCcccceEEEecC-cccc
Q 001990 287 DLKD--I-DY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFG 360 (985)
Q Consensus 287 ~~~~--l-~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~p~~~GaDi~v~s~-k~lg 360 (985)
+.++ . .. ++++|++|++.+| |.+|.+.|+++|.++ +|+++++|. ..+.+..... -.++|++++++ |.++
T Consensus 151 ~~~~g~~~~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~-a~~~~~~~~~-~~~~di~~~s~sK~~~ 225 (398)
T 2fyf_A 151 TSDPGSAPEPQTDPSVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDA-TSGAGGLPVD-IAETDAYYFAPQKNFA 225 (398)
T ss_dssp ECCTTCCCCCCCCTTCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEEC-TTTTTTSCCC-GGGCSEEEECTTSTTC
T ss_pred ecCCCCCCCccccCCCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEe-ccccCCcccC-cccCcEEEEecCcccC
Confidence 5431 1 11 5678999999887 789999999999887 899999953 4444433211 12589999998 7665
Q ss_pred ccCCCCCCceEEEEEchhhHhcCCCcee-eeeecCCCCcceEEecccccccc--cccccCCCccchhHHHHHHHHHHHHH
Q 001990 361 VPMGYGGPHAAFLATSQEYKRMMPGRIV-GVSIDSSGKPALRVAMQTREQHI--RRDKATSNICTAQALLANMAAMYAVY 437 (985)
Q Consensus 361 ~P~~~GGP~~G~l~~~~~~~~~lp~~~v-G~s~d~~g~~~~~l~l~tre~~~--rre~atsni~t~~~l~a~~aa~y~~~ 437 (985)
.| +++|++++++++++++..... |. ..+.| +......+.. .+..+|+|+ ....++.+++ ..
T Consensus 226 ~~-----gg~g~l~~~~~~~~~l~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~t~~~---~~~~a~~~al--~~ 289 (398)
T 2fyf_A 226 SD-----GGLWLAIMSPAALSRIEAIAATGR-----WVPDF-LSLPIAVENSLKNQTYNTPAI---ATLALLAEQI--DW 289 (398)
T ss_dssp SC-----SSEEEEEECHHHHHHHHHHHHTTC-----CCCGG-GCHHHHHHHHTTTCCSSCCCH---HHHHHHHHHH--HH
T ss_pred CC-----CceEEEEECHHHHHHhhcccccCC-----CCCcE-EehHHHhhhcccCCCCCCCCH---HHHHHHHHHH--HH
Confidence 32 258999999988776510000 00 00000 0000000000 011133333 3344444444 44
Q ss_pred cCcch-HHHHHHHHHHHHHHHHHHHhcCCCEEEcC-CC--Ccc-eEEEecC-C--HHHHHHHHHHcCceeeee----cCC
Q 001990 438 HGPEG-LKTIAQRVHGLAGTFALGLKKLGTVEVQG-LP--FFD-TVKVKCA-D--AHAIASAAYKIEMNLRVV----DSN 505 (985)
Q Consensus 438 ~g~~G-l~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~~--~~~-~~~i~~~-~--~~~l~~~L~~~Gi~~~~~----~~~ 505 (985)
+..+| ++++.++..++++++.+.|++++|+++.. .+ ..+ .+.+..+ + ..++.++|.++||.++.. .++
T Consensus 290 ~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~g~~~~~~~ 369 (398)
T 2fyf_A 290 LVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDVDAGTVAKILRANGIVDTEPYRKLGRN 369 (398)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECTTSCHHHHHHHHHHTTCBCCSCCTTTCSS
T ss_pred HHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCCCCCHHHHHHHHHHCCcEEecCcccCCCC
Confidence 44556 89999999999999999999983398874 22 233 4556654 2 789999999999988542 247
Q ss_pred eEEEEeccCCCHHHHHHHHHHHhC
Q 001990 506 TVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 506 ~lris~~~~~t~edid~ll~~l~~ 529 (985)
.+|+|++.++|++|+++++++|+.
T Consensus 370 ~iRis~~~~~t~e~i~~~~~~l~~ 393 (398)
T 2fyf_A 370 QLRVAMFPAVEPDDVSALTECVDW 393 (398)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999973
No 335
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.63 E-value=3e-15 Score=171.88 Aligned_cols=274 Identities=12% Similarity=0.096 Sum_probs=179.2
Q ss_pred HHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHH-hhcCCCeEEEEeC------
Q 001990 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICIT-RADGFDIKVVVSD------ 287 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~-~a~~~gi~v~~~~------ 287 (985)
++++.+++++|.+..++ ++.+||.+++.++.++ .. +||+|+++...|+++...+.. ...+.+++++.++
T Consensus 73 ~~r~~la~~~g~~~~~i-~~~sGt~a~~~a~~~~-~~--~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 148 (405)
T 2vi8_A 73 LARERAKQLFGAEHANV-QPHSGAQANMAVYFTV-LE--HGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETH 148 (405)
T ss_dssp HHHHHHHHHHTCSEEEC-CCSSHHHHHHHHHHHH-CC--TTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTC
T ss_pred HHHHHHHHHhCCCceEE-EecCcHHHHHHHHHHh-cC--CCCEEEEecccccchhcccchhhhccceeEEEecccccccC
Confidence 36689999999986433 3456688877776655 23 789999999999877532100 0001123555543
Q ss_pred ---chhhhc-cCC-CEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCC-CCCcc---cceEEEecC-c
Q 001990 288 ---LKDIDY-KSG-DVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK-PPGEL---GADIVVGSA-Q 357 (985)
Q Consensus 288 ---~~~l~~-l~~-~t~~V~v~~pn~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~-~p~~~---GaDi~v~s~-k 357 (985)
++++++ +++ ++++|++ +|+.+|...|+++|.++|+++|+++++|. ..+.|... ....+ ++|++++|. |
T Consensus 149 ~~d~~~l~~~i~~~~~~~v~~-~~~~~~~~~~l~~i~~l~~~~~~~li~De-a~~~g~~~~~~~~~~~~~~di~~~s~sK 226 (405)
T 2vi8_A 149 VIDYDDVREKARLHRPKLIVA-AAAAYPRIIDFAKFREIADEVGAYLMVDM-AHIAGLVAAGLHPNPVPYAHFVTTTTHK 226 (405)
T ss_dssp SBCHHHHHHHHHHHCCSEEEE-CCSSCCSCCCHHHHHHHHHHHTCEEEEEC-TTTHHHHHTTSSCCSTTTCSEEEEESSS
T ss_pred CcCHHHHHHHHHhcCCeEEEE-eCCCCCccCCHHHHHHHHHHcCCEEEEEc-cccccccccCcCCCccccCCEEEEeccc
Confidence 345655 554 6888877 55556877799999999999999999952 33433211 11112 689999998 8
Q ss_pred cccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHH
Q 001990 358 RFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVY 437 (985)
Q Consensus 358 ~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~ 437 (985)
+|++| +| |++++++++.+.+.... .+ ...+++|. ....++.+++ ..
T Consensus 227 ~~~g~-----~g-G~~~~~~~~~~~l~~~~---------------------~~--~~~~~~~~---~~~aa~~~al--~~ 272 (405)
T 2vi8_A 227 TLRGP-----RG-GMILCQEQFAKQIDKAI---------------------FP--GIQGGPLM---HVIAAKAVAF--GE 272 (405)
T ss_dssp TTCCC-----SC-EEEEECHHHHHHHHHHH---------------------TT--TTCSSCCH---HHHHHHHHHH--HH
T ss_pred cCCCC-----CC-eEEEEcHHHHHHHHhhh---------------------cc--cccCCCCH---HHHHHHHHHH--HH
Confidence 77532 34 89999988766541000 00 01122222 2233333333 33
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCC-CCcceEEEecC----CHHHHHHHHHHcCceeeee----------
Q 001990 438 HGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCA----DAHAIASAAYKIEMNLRVV---------- 502 (985)
Q Consensus 438 ~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~i~~~----~~~~l~~~L~~~Gi~~~~~---------- 502 (985)
+..++++++.++..++.+++.+.|+++| +++..+ .....+.+.++ ...++.+.|.++||.++..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~ 351 (405)
T 2vi8_A 273 ALQDDFKAYAKRVVDNAKRLASALQNEG-FTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPF 351 (405)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSSCTT
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhCC-CeEecCCCCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccCCCC
Confidence 3345889999999999999999999986 888742 22233445543 2778999999999987642
Q ss_pred cCCeEEEEecc----CCCHHHHHHHHHHHhC
Q 001990 503 DSNTVTASFDE----TTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ~~~~lris~~~----~~t~edid~ll~~l~~ 529 (985)
.++.+|++++. ..+++|+++++++|..
T Consensus 352 ~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~ 382 (405)
T 2vi8_A 352 VTSGIRIGTAAVTTRGFGLEEMDEIAAIIGL 382 (405)
T ss_dssp TCSEEEEECHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCceEEeeeeeeecCCCHHHHHHHHHHHHH
Confidence 14679999997 5679999999999974
No 336
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.63 E-value=4.2e-14 Score=165.14 Aligned_cols=302 Identities=13% Similarity=0.133 Sum_probs=192.0
Q ss_pred CCCCCCCCCcHHHHHHHHhCCc--cccccCCChhhHhhHHHHHHHHHHHHHHHh----hCC--CCcceeeccchHHHHHH
Q 001990 172 GMGYYNTHVPPVILRNIMENPA--WYTQYTPYQAEIAQGRLESLLNFQTMIADL----TGL--PMSNASLLDEGTAAAEA 243 (985)
Q Consensus 172 G~g~~~~~~p~~v~~~i~~~~~--~~t~~~py~~e~sqg~l~~i~e~q~~ia~L----~g~--~~~~~sl~~~~ta~~ea 243 (985)
+.|..+...|+.+.+++.+.-. ....|++. +|.. ++++.+|++ +|. ++.++.+++|++.++++
T Consensus 63 ~~g~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~-----~g~~----~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~ 133 (447)
T 3b46_A 63 GQGFFSYSPPQFAIKEAQKALDIPMVNQYSPT-----RGRP----SLINSLIKLYSPIYNTELKAENVTVTTGANEGILS 133 (447)
T ss_dssp CCCSCSSCCCHHHHHHHHHHTTSGGGGSCCCT-----TCCH----HHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCC-----CCCH----HHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHH
Confidence 4454333456666544443211 13455542 2222 344455555 454 44578889999998888
Q ss_pred HHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC--------------------chhhhc-cCCCEeEEE
Q 001990 244 MAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD--------------------LKDIDY-KSGDVCGVL 302 (985)
Q Consensus 244 ~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~--------------------~~~l~~-l~~~t~~V~ 302 (985)
++.++. . +||+|++++..|+.+...++. .|.+++.++ +++|++ +++++++|+
T Consensus 134 ~~~~l~-~--~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~ 206 (447)
T 3b46_A 134 CLMGLL-N--AGDEVIVFEPFFDQYIPNIEL----CGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITSKTKAVI 206 (447)
T ss_dssp HHHHHC-C--TTCEEEEEESCCTTHHHHHHH----TTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCTTEEEEE
T ss_pred HHHHHc-C--CCCEEEEeCCCchhHHHHHHH----cCCEEEEEeCCCccccccccccccCcccCHHHHHHhhccCCeEEE
Confidence 877652 3 789999999999998887653 466665543 245555 778899999
Q ss_pred EEcC-CCCeee---ccHHHHHHHHHhCCcEEEEEeccccccCC--C--C-----CCcccceEEEecC-ccccccCCCCCC
Q 001990 303 VQYP-GTEGEV---LDYGDFIKNAHANGVKVVMATDLLALTIL--K--P-----PGELGADIVVGSA-QRFGVPMGYGGP 368 (985)
Q Consensus 303 v~~p-n~~G~i---~dl~~I~~~a~~~galliV~a~~~alg~l--~--~-----p~~~GaDi~v~s~-k~lg~P~~~GGP 368 (985)
+.+| |++|.+ +++++|+++|+++|+++++| +..+.... . + ++.++.|++++|. |.|+.| |-
T Consensus 207 l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~D-e~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~----G~ 281 (447)
T 3b46_A 207 INTPHNPIGKVFTREELTTLGNICVKHNVVIISD-EVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAAT----GW 281 (447)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE-CTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCT----TS
T ss_pred EeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEe-ccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCc----ch
Confidence 9998 679988 47999999999999999995 33332111 0 1 1245889999997 877532 22
Q ss_pred ceEEEEE-chhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhH-HHHHHHHHHHHHcC-cchHHH
Q 001990 369 HAAFLAT-SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQA-LLANMAAMYAVYHG-PEGLKT 445 (985)
Q Consensus 369 ~~G~l~~-~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~-l~a~~aa~y~~~~g-~~Gl~~ 445 (985)
-+|++++ ++++++.+... ... ...+++.. ..++.+++ .... .+.+++
T Consensus 282 riG~~~~~~~~l~~~l~~~--------------------------~~~--~~~~~~~~~~~a~~~aL--~~~~~~~~~~~ 331 (447)
T 3b46_A 282 RIGWVLSLNAELLSYAAKA--------------------------HTR--ICFASPSPLQEACANSI--NDALKIGYFEK 331 (447)
T ss_dssp CCEEEECSCHHHHHHHHHH--------------------------HHH--HTSSCCHHHHHHHHHHH--HHHHHHTHHHH
T ss_pred hhEEEEeCCHHHHHHHHHH--------------------------Hhh--ccCCCChHHHHHHHHHH--hCCcchHHHHH
Confidence 3799999 88777654100 000 01111122 22222222 2211 334778
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEcCC--CCcceEEEecC-----------------C-HHHHHHHHH-HcCceeeee--
Q 001990 446 IAQRVHGLAGTFALGLKKLGTVEVQGL--PFFDTVKVKCA-----------------D-AHAIASAAY-KIEMNLRVV-- 502 (985)
Q Consensus 446 i~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~~~~~i~~~-----------------~-~~~l~~~L~-~~Gi~~~~~-- 502 (985)
+.++..++.+++.+.|+++| +++..+ .++ +.++++ . ..++.++|. ++||.+...
T Consensus 332 ~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~ 408 (447)
T 3b46_A 332 MRQEYINKFKIFTSIFDELG-LPYTAPEGTYF--VLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTE 408 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-CCEECCSBSSE--EEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGG
T ss_pred HHHHHHHHHHHHHHHHHHCC-CeecCCCeeEE--EEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchH
Confidence 88899999999999999886 776532 222 222322 2 568888887 579987432
Q ss_pred ---------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 503 ---------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ---------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.++.+|+|+.. ++++|++.++.|..
T Consensus 409 f~~~~~~~~~~~~iRls~~~--~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 409 FYIKEHEKAAENLLRFAVCK--DDAYLENAVERLKL 442 (447)
T ss_dssp GSCGGGGGGGTTEEEEECCS--CHHHHHHHHHHGGG
T ss_pred hCCCCccCCCCCEEEEEEeC--CHHHHHHHHHHHHH
Confidence 15789999984 89999999999874
No 337
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.63 E-value=1.2e-15 Score=172.38 Aligned_cols=291 Identities=13% Similarity=0.092 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcH---HHHHhcCcEEEEEeC
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNP---ATAAMCGMKIVSVGT 709 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~---~~~~~~G~~v~~v~~ 709 (985)
...++++++++++|.+.. +++++|++++..++.++.. +| .+..|+++...|.... ......|++++.++.
T Consensus 49 ~~~~l~~~la~~~~~~~~-i~~~~g~~a~~~a~~~~~~----~g--~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~ 121 (359)
T 3pj0_A 49 VIEDFETKIAKILGKQSA-VFFPSGTMAQQIALRIWAD----RK--ENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGT 121 (359)
T ss_dssp HHHHHHHHHHHHHTCSEE-EEESCHHHHHHHHHHHHHH----HH--TCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSC
T ss_pred HHHHHHHHHHHHhCCCcE-EEeCCHHHHHHHHHHHHHh----cC--CCcEEEEeccceeeehhcchHHHhcCceEEecCC
Confidence 366889999999999875 4557788776555444332 11 1123556655443221 112467999999987
Q ss_pred CCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCc-cccc--cCHHHHHHHHHHcCCEEEEEcccccccc-CCC-CC--Cc
Q 001990 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STH-GVYE--EGIDEICKIIHDNGGQVYMDGANMNAQV-GLT-SP--GY 781 (985)
Q Consensus 710 ~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~-G~i~--~di~eI~~la~~~g~lliVD~a~~~~~~-g~~-~~--g~ 781 (985)
+++.+|+++|+++ . +++++|++++| |++ |.+. .++++|+++|+++|+++|+|+++..... ... .+ -.
T Consensus 122 -~~~~~d~~~l~~~-~---~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~ 196 (359)
T 3pj0_A 122 -ANQLLTIDDIKSL-R---EPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEIC 196 (359)
T ss_dssp -TTSCCCHHHHHTC-S---SCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHH
T ss_pred -cCCCcCHHHHHhc-c---CCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhh
Confidence 5688999999987 4 78999999999 455 6775 1366669999999999999998743211 001 11 11
Q ss_pred CCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHH
Q 001990 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA 861 (985)
Q Consensus 782 ~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~ 861 (985)
.++|+++.++||+|+ ||++|+++.++++++.+.... .. .+ .+..+ ....+.++.+.+.
T Consensus 197 ~~~d~~~~s~sK~~~------~~~gg~~~~~~~l~~~~~~~~-~~----------~~-~~~~~----~~~~~~a~~~~l~ 254 (359)
T 3pj0_A 197 ALFDSVYVSFYKGIG------GIAGAILAGNDDFVQEAKIWK-RR----------YG-GDLIS----LYPYILSADYYFE 254 (359)
T ss_dssp TTCSEEEEESSSTTC------CSSCEEEEECHHHHHHHHHHH-HH----------TT-CCCSC----CHHHHHHHHHHHH
T ss_pred ccCCEEEEeccccCC------CcceEEEECCHHHHHHHHHHH-HH----------hC-CCcch----hHHHHHHHHHHHH
Confidence 367999999999884 343478888877765442100 00 00 01111 0111122223332
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHhccCCeeEc-CCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCC-C
Q 001990 862 MMGSKGLTEASKIAILNANYMAKRLEKHYPILFR-GVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMS-W 939 (985)
Q Consensus 862 ~lg~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~-g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~-~ 939 (985)
.. + +..++..++++++.+.|++...+.+. .+.. .+.+.++++. ..+.+..++.+.|.++||.+.... +
T Consensus 255 ~~----~-~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~--~~~~~~~~~~---~~~~~~~~l~~~l~~~GV~v~~g~~~ 324 (359)
T 3pj0_A 255 KR----I-GKMAEYFEAAKGLAERFNSCSGVKTVPEVPV--SNMFHVYFEN---SADEIGAILTKIQDETGVGISGYLQE 324 (359)
T ss_dssp HH----G-GGHHHHHHHHHHHHHHHHTSTTEEEESSSCS--SSEEEEEESS---CHHHHHHHHHHHHHHHCEECCSCCEE
T ss_pred HH----H-HHhHHHHHHHHHHHHHHhhCCCceeeccCCc--ceEEEEEecC---ccchhHHHHHHHHHhcCcEecCCccc
Confidence 21 1 23345567788999999874333331 1111 2234455541 001235688999999999875432 1
Q ss_pred --CCCCEEEEeccCC---CCHHhhchHHHHHHHHHH
Q 001990 940 --PVPGTLMIEPTES---ESKVCHNREDLFFQILLS 970 (985)
Q Consensus 940 --pv~~~lris~t~~---~t~eeId~~~~~i~aL~~ 970 (985)
+-.+.+|+++... .+.++++ +.++.|.+
T Consensus 325 ~~~~~~~~r~~i~~~~~~~~~e~l~---~~l~~l~~ 357 (359)
T 3pj0_A 325 KSADVCAFEVSVGDAFAEIPAKNLE---LVFRCLEK 357 (359)
T ss_dssp EETTEEEEEEECCTTGGGSCHHHHH---HHHHHHHH
T ss_pred cCCCceEEEEEecCccccCCHHHHH---HHHHHHHh
Confidence 1125689887644 4566666 66665554
No 338
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.63 E-value=3.6e-14 Score=164.94 Aligned_cols=291 Identities=12% Similarity=0.120 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHHh-CCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEE-cCCCCCCcHHHHH------------
Q 001990 633 MFNNLGEWLCTIT-GFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCII-PVSAHGTNPATAA------------ 698 (985)
Q Consensus 633 ~~~el~~~la~l~-G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv-~~~~Hg~~~~~~~------------ 698 (985)
...++++++++++ +.+. .++.++|++++++++.++|.+. ++++||+ ...+|+.......
T Consensus 97 ~~~~l~~~la~~~~~~~~-v~~~~sgseA~~~al~~ar~~~------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p 169 (434)
T 2epj_A 97 AEVLLAEKILGYVKRGGM-IRFVNSGTEATMTAIRLARGYT------GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVP 169 (434)
T ss_dssp HHHHHHHHHHHHHCTTCE-EEEESSHHHHHHHHHHHHHHHH------CCCEEEEEETCCCCSSGGGSEECC------CEE
T ss_pred HHHHHHHHHHHhCCCCCE-EEEeCCHHHHHHHHHHHHHHhh------CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCC
Confidence 4667889999999 4443 4677889988877777665442 3456666 4467775443221
Q ss_pred -hcCc------EEEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEE
Q 001990 699 -MCGM------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMD 766 (985)
Q Consensus 699 -~~G~------~v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~d----i~eI~~la~~~g~lliVD 766 (985)
..|+ ++..+|. .|+++|+++++++++++++|+++.. +.+|.+. + +++|.++|++||+++|+|
T Consensus 170 ~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~-~~~~~l~~l~~l~~~~g~~lI~D 243 (434)
T 2epj_A 170 TSAGVPEAVARLTLVTPY-----NDVEALERVFAEYGDRIAGVIVEPVIANAGVIP-PRREFLAALQRLSRESGALLILD 243 (434)
T ss_dssp SSTTCCHHHHTTEEEEET-----TCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBC-CCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCCcccCceEecCC-----CCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccC-CCHHHHHHHHHHHHHcCCEEEEE
Confidence 1243 3555665 3899999999754346777666533 3579876 6 999999999999999999
Q ss_pred ccccccccCCCCCC-----cCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCC
Q 001990 767 GANMNAQVGLTSPG-----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGT 841 (985)
Q Consensus 767 ~a~~~~~~g~~~~g-----~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~ 841 (985)
++|. ++ .....+ ...+|++++ +|+|+ +|..+|++++++++++.+... +.. ...+|
T Consensus 244 Ev~~-g~-~~g~~~~~~~~~~~~di~s~--sK~l~-----~G~~~G~v~~~~~~~~~l~~~--~~~-------~~~~t-- 303 (434)
T 2epj_A 244 EVVT-GF-RLGLEGAQGYFNIEGDIIVL--GKIIG-----GGFPVGAVAGSREVMSLLTPQ--GKV-------FNAGT-- 303 (434)
T ss_dssp ETTT-TT-TSSTTHHHHHHTCCCSEEEE--EGGGG-----TTSSCEEEEECHHHHTTBTTT--SSB-------CCCCT--
T ss_pred cchh-ce-eCCcchhhHHhCCCCCeeee--cchhc-----CCcceeeeeecHHHHHhhccC--CCc-------ccCCC--
Confidence 9985 32 111111 124788755 59884 345689999998877655321 000 00011
Q ss_pred cccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc---CCe--eEcCCCCceeEEEEEEecCcc---
Q 001990 842 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPI--LFRGVNGTVAHEFIVDLRGLK--- 913 (985)
Q Consensus 842 i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~---~~i--~~~g~~~~~~~~~vv~~~~~~--- 913 (985)
.+ +++..++++.+.+..+..+. ..++..++.+++++.|++. +.+ ...+. +.+ +.+.+....
T Consensus 304 ~~----~~~~~~aa~~a~l~~~~~~~---~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-g~~---~~i~~~~~~~~~ 372 (434)
T 2epj_A 304 FN----AHPITMAAGLATLKALEEEP---VYSVSREAAKALEEAASEVLDRTGLPYTINRV-ESM---MQLFIGVEEVSN 372 (434)
T ss_dssp TT----TCHHHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEE-TTE---EEEEETCSCCSS
T ss_pred CC----cCHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEe-eeE---EEEEEeCCCccc
Confidence 11 23334444555566554433 3355667778888888652 122 12221 222 334443100
Q ss_pred -----ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 914 -----NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 914 -----~~~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
........++.+.|.++||.+..... ..+ .++..+|++|++ +++++|+++++++
T Consensus 373 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~--~~~~~~t~e~i~---~~l~~l~~~l~~~ 431 (434)
T 2epj_A 373 AAQARKADKKFYVKLHEEMLRRGVFIAPSNL---EAV--FTGLPHQGEALE---IAVEGLRSSLKTV 431 (434)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHTTEECCSSTT---SCE--ECCTTCSHHHHH---HHHHHHHHHHHHH
T ss_pred chhccccCHHHHHHHHHHHHHCCeEEeccCC---CcE--EEeccCCHHHHH---HHHHHHHHHHHHH
Confidence 00001246789999999999864332 234 455689999999 9999999988765
No 339
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.63 E-value=6.1e-14 Score=159.33 Aligned_cols=298 Identities=11% Similarity=0.035 Sum_probs=192.0
Q ss_pred CCCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHHHHHHHHHhhCC--CCcceeeccchHHHHHHHHHHhhhhcCC
Q 001990 177 NTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGL--PMSNASLLDEGTAAAEAMAMCNNIQKGK 254 (985)
Q Consensus 177 ~~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g~--~~~~~sl~~~~ta~~ea~~~a~~~~~~~ 254 (985)
+...|+.+.+++.+.......|.+. +|..+...++.+.+++.+|. ++.++.+++|+|.+++.++.++. . +
T Consensus 34 ~~~~~~~v~~a~~~~~~~~~~y~~~-----~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~-~--~ 105 (376)
T 3ezs_A 34 QFETPKFIQDALKNHTHSLNIYPKS-----AFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVL-F--D 105 (376)
T ss_dssp CSCCCHHHHHHHHTTGGGGGSCCCT-----TCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHT-T--T
T ss_pred CCCCCHHHHHHHHHhhhhcCCCCCC-----CCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHc-C--C
Confidence 3346777766665543334455542 22222222233444444587 66789899999998887776652 2 6
Q ss_pred --CCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch-------hhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHH
Q 001990 255 --KKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK-------DIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIK 320 (985)
Q Consensus 255 --g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~~-------~l~~-l~~~t~~V~v~~p-n~~G~i~d---l~~I~~ 320 (985)
||+|+++...|+++...++ ..|.+++.++.+ ++++ +.+++++|++.+| |.+|.+.+ +++|++
T Consensus 106 ~~gd~vl~~~p~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~ 181 (376)
T 3ezs_A 106 YQNPTIAYPNPFYQIYEGAAK----FIKAKSLLMPLTKENDFTPSLNEKELQEVDLVILNSPNNPTGRTLSLEELISWVK 181 (376)
T ss_dssp CSSCEEEEEESCCTHHHHHHH----HTTCEEEEEECCGGGTSCCCCCHHHHHHCSEEEECSSCTTTCCCCCHHHHHHHHH
T ss_pred CCCCEEEEecCCcHhHHHHHH----HcCCEEEEcccCCCCCcchhHHhhhccCCCEEEEcCCCCCcCCCCCHHHHHHHHH
Confidence 8999999999998888765 358888887653 3444 5567899999888 67998865 778888
Q ss_pred HHHhCCcEEEEEeccccccCCC--CCC-----------cccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCc
Q 001990 321 NAHANGVKVVMATDLLALTILK--PPG-----------ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGR 386 (985)
Q Consensus 321 ~a~~~galliV~a~~~alg~l~--~p~-----------~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~ 386 (985)
+|+++|+++++|. ..+..... ... .++.+++++|. |.+|.| |..+|+++.++++++.+...
T Consensus 182 ~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~~~~~ 256 (376)
T 3ezs_A 182 LALKHDFILINDE-CYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAP----GLRSGFIAGDSRLLEKYKAF 256 (376)
T ss_dssp HHHHHTCEEEEEC-TTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCG----GGCCEEEEECHHHHHHHHHH
T ss_pred HHHHcCcEEEEEc-cchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCc----cceeEEEeeCHHHHHHHHHH
Confidence 8999999999952 33321111 110 46888999997 887533 34568999888877654100
Q ss_pred eeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCC
Q 001990 387 IVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGT 466 (985)
Q Consensus 387 ~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~ 466 (985)
+...+.+. +.....++.+++ . ..+.++++.++..++.+++.+.|+ |
T Consensus 257 --------------------------~~~~~~~~-~~~~~~a~~~~l--~--~~~~~~~~~~~~~~~~~~l~~~l~--~- 302 (376)
T 3ezs_A 257 --------------------------RAYLGYTS-ANAIQKASEAAW--L--DDRHAEFFRNIYANNLKLARKIFK--N- 302 (376)
T ss_dssp --------------------------HTTTCCCC-CHHHHHHHHHHH--H--CSHHHHHHHHHHHHHHHHHHHHST--T-
T ss_pred --------------------------HhhhcCCC-ChHHHHHHHHHH--h--CcHHHHHHHHHHHHHHHHHHHHhc--C-
Confidence 00001111 111222222221 2 244578888999999999999987 4
Q ss_pred EEEcCCCCcceEEEecCCHHHHHHHHHH-cCceeeee--------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 467 VEVQGLPFFDTVKVKCADAHAIASAAYK-IEMNLRVV--------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 467 ~~~~~~~~~~~~~i~~~~~~~l~~~L~~-~Gi~~~~~--------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+....... -+.+..+...++.++|.+ +||.+... .++.+|++++. |++|+++++++|..
T Consensus 303 ~~~~~~~~--~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~--~~~~i~~~l~~l~~ 370 (376)
T 3ezs_A 303 TLIYPYSF--YVYLPVQNGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY--DTPLLEKPLEIIET 370 (376)
T ss_dssp CCCCSBSS--EEEEECSCHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred CCCCCcce--EEEEECCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC--CHHHHHHHHHHHHH
Confidence 54111111 233455457889999987 89987531 35789999874 99999999999874
No 340
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.63 E-value=3.2e-15 Score=171.74 Aligned_cols=271 Identities=13% Similarity=0.058 Sum_probs=176.9
Q ss_pred HHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCe--EEEEe-------
Q 001990 216 FQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDI--KVVVS------- 286 (985)
Q Consensus 216 ~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi--~v~~~------- 286 (985)
.++.+++++|.+.+++ ++.+||.++++++.++ .. +||+|++++..|+++...+.. ++..|. ..+.+
T Consensus 74 ar~~la~~~g~~~~~i-~~~sGt~a~~~~~~~~-~~--~gd~Vl~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ 148 (407)
T 2dkj_A 74 AIERAKALFGAAWANV-QPHSGSQANMAVYMAL-ME--PGDTLMGMDLAAGGHLTHGSR-VNFSGKLYKVVSYGVRPDTE 148 (407)
T ss_dssp HHHHHHHHHTCSEEEC-CCSSHHHHHHHHHHHH-CC--TTCEEEEECGGGTCCGGGTCT-TSHHHHHSEEEEECCCTTTS
T ss_pred HHHHHHHHhCCCcceE-EecchHHHHHHHHHHh-cC--CCCEEEEecccccCccchHHH-HHhcCceEEEEecCCCcccC
Confidence 4569999999986444 4456666777666554 23 789999999999877421110 111122 33333
Q ss_pred --Cchhhhc-cC-CCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEeccccccCC-----CCCCcccceEEEecC-
Q 001990 287 --DLKDIDY-KS-GDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-----KPPGELGADIVVGSA- 356 (985)
Q Consensus 287 --~~~~l~~-l~-~~t~~V~v~~pn~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l-----~~p~~~GaDi~v~s~- 356 (985)
|++++++ +. +++++|++.+|++ |.+.|+++|.++|+++|+++++| +..+.|.. ..+.+ .+|++++|.
T Consensus 149 ~~d~~~l~~~l~~~~~~~v~~~~p~~-~~~~~l~~i~~l~~~~~~~li~D-ea~~~g~~~~~~~~~~~~-~~di~~~s~s 225 (407)
T 2dkj_A 149 LIDLEEVRRLALEHRPKVIVAGASAY-PRFWDFKAFREIADEVGAYLVVD-MAHFAGLVAAGLHPNPLP-YAHVVTSTTH 225 (407)
T ss_dssp SCCHHHHHHHHHHHCCSEEEECCSSC-CSCCCHHHHHHHHHHHTCEEEEE-CTTTHHHHHTTCSCCCTT-TCSEEEEESS
T ss_pred ccCHHHHHHHHhhcCCeEEEEecccc-CCCCCHHHHHHHHHHcCCEEEEE-ccccccccccCccCCccc-cccEEEEecc
Confidence 2345665 55 3789999877764 57889999999999999999995 33333221 11122 389999998
Q ss_pred ccccccCCCCCCceEEEEEc-hhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHH
Q 001990 357 QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYA 435 (985)
Q Consensus 357 k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~ 435 (985)
|+|+ ||..|+++++ +++.+.+.... .+. ..++.+. ....++.+++
T Consensus 226 K~l~------g~~~G~~~~~~~~~~~~l~~~~---------------------~~~--~~~~~~~---~~~~a~~~al-- 271 (407)
T 2dkj_A 226 KTLR------GPRGGLILSNDPELGKRIDKLI---------------------FPG--IQGGPLE---HVIAGKAVAF-- 271 (407)
T ss_dssp GGGC------CCSCEEEEESCHHHHHHHHHHH---------------------TTT--TCSSCCH---HHHHHHHHHH--
T ss_pred ccCC------CCCceEEEECCHHHHHHHHhhh---------------------ccc--ccCCCcH---HHHHHHHHHH--
Confidence 7553 3345899999 67776541100 000 0112221 2222333443
Q ss_pred HHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCC-CCcceEEEecC----CHHHHHHHHHHcCceeeee--------
Q 001990 436 VYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCA----DAHAIASAAYKIEMNLRVV-------- 502 (985)
Q Consensus 436 ~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~i~~~----~~~~l~~~L~~~Gi~~~~~-------- 502 (985)
..+..++++++.++..++.+++.+.|+++| +++..+ .....+.+.++ ...++.+.|.++||.+...
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~ 350 (407)
T 2dkj_A 272 FEALQPEFKEYSRLVVENAKRLAEELARRG-YRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKP 350 (407)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSC
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhCC-ceeecCCCCceEEEEECcccCCCHHHHHHHHHHcCceecCCcCcccccc
Confidence 333346889999999999999999999986 888742 22233455554 2778999999999987542
Q ss_pred --cCCeEEEEeccC----CCHHHHHHHHHHHhC
Q 001990 503 --DSNTVTASFDET----TTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 --~~~~lris~~~~----~t~edid~ll~~l~~ 529 (985)
.++.+|++++.+ .|++|+++++++|..
T Consensus 351 ~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~ 383 (407)
T 2dkj_A 351 PRVTSGIRIGTPAITTRGFTPEEMPLVAELIDR 383 (407)
T ss_dssp TTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHH
T ss_pred ccCCCceeeecccccccCCCHHHHHHHHHHHHH
Confidence 146799999874 799999999999974
No 341
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.63 E-value=1.3e-13 Score=158.98 Aligned_cols=270 Identities=11% Similarity=0.084 Sum_probs=181.4
Q ss_pred HHHHHHHHhh----CC--CC-cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC
Q 001990 215 NFQTMIADLT----GL--PM-SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD 287 (985)
Q Consensus 215 e~q~~ia~L~----g~--~~-~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~ 287 (985)
++++.+|+++ |. ++ .++.+++|+|.++++++.++. ++||+|+++...|+.+...++. .|.+++.++
T Consensus 79 ~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~---~~gd~Vl~~~p~~~~~~~~~~~----~g~~~~~~~ 151 (412)
T 2x5d_A 79 RLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATL---DHGDTILVPNPSYPIHIYGAVI----AGAQVRSVP 151 (412)
T ss_dssp HHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHC---CTTCEEEEEESCCHHHHHHHHH----HTCEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhC---CCCCEEEEcCCCchhHHHHHHH----cCCEEEEee
Confidence 4666777777 85 44 578899999998888776652 2789999999999998887754 467777664
Q ss_pred c----------hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEeccccccCC-C----CCC--
Q 001990 288 L----------KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL-K----PPG-- 345 (985)
Q Consensus 288 ~----------~~l~~-l~~~t~~V~v~~p-n~~G~i~d---l~~I~~~a~~~galliV~a~~~alg~l-~----~p~-- 345 (985)
. +++++ +++++++|++.+| |.+|.+.+ +++|+++|+++|+++++| +..+.+.. . +..
T Consensus 152 ~~~~~~~~~d~~~l~~~i~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D-e~~~~~~~~g~~~~~~~~~ 230 (412)
T 2x5d_A 152 LVPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHD-LAYADIVYDGWKAPSIMQV 230 (412)
T ss_dssp CSTTSCHHHHHHHHHHTEESCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE-CTTTTCBCTTCCCCCGGGS
T ss_pred cCCccCCCCCHHHHHHhcccCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEe-ccccccccCCCCCCChhhc
Confidence 3 23444 5678899999888 57998864 789999999999999995 33332221 1 111
Q ss_pred --cccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccc
Q 001990 346 --ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT 422 (985)
Q Consensus 346 --~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t 422 (985)
..+.|++++|. |.|+. +|..+|++++++++++.+.... + ....+.|.
T Consensus 231 ~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~l~~~~----------------------~--~~~~~~~~-- 280 (412)
T 2x5d_A 231 PGAKDIAVEFFTLSKSYNM----AGWRIGFMVGNPELVSALARIK----------------------S--YHDYGTFT-- 280 (412)
T ss_dssp TTGGGTEEEEEECC-CCSC----TTSCCEEEEECHHHHHHHHHHH----------------------H--HHCCCCCH--
T ss_pred cCccCcEEEEecCccccCC----cccceEEEEcCHHHHHHHHHHH----------------------h--hhccCCCH--
Confidence 25789999998 87753 2344799999988776651100 0 00011111
Q ss_pred hhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecC------CHHHHHHHHHH-c
Q 001990 423 AQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA------DAHAIASAAYK-I 495 (985)
Q Consensus 423 ~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~------~~~~l~~~L~~-~ 495 (985)
....+..++ +. .+.+.++++.++..++.+++.+.|+++| +++.......-+.+.++ ...++.+.|.+ +
T Consensus 281 -~~~~a~~~~--l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 355 (412)
T 2x5d_A 281 -PLQVAAIAA--LE-GDQQCVRDIARQYQQRRDVLVKGLREAG-WMVENPKASMYVWAKIPEPYAHLGSLEFAKKLLQDA 355 (412)
T ss_dssp -HHHHHHHHH--HH-SCSHHHHHHHHHHHHHHHHHHHHHHHHT-CCCCCCSBSSEEEEECCTTTGGGCHHHHHHHHHHHH
T ss_pred -HHHHHHHHH--Hh-CCHHHHHHHHHHHHHHHHHHHHHHHHCC-CEecCCCeeeEEEEEcCCccCCCCHHHHHHHHHHHC
Confidence 112122222 22 3456688899999999999999999876 77653211111334443 36788888865 6
Q ss_pred Cceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 496 EMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 496 Gi~~~~~------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
||.+... .++.+|++++. ++++++++++.|..
T Consensus 356 gi~v~~g~~f~~~~~~~iRis~~~--~~~~l~~~l~~l~~ 393 (412)
T 2x5d_A 356 KVSVSPGIGFGDYGDDHVRFALIE--NRDRLRQAVRGIKA 393 (412)
T ss_dssp CEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred CEEEeCchhhCCCCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 9987542 25789999986 89999999998874
No 342
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.63 E-value=4.5e-14 Score=163.62 Aligned_cols=276 Identities=15% Similarity=0.097 Sum_probs=185.2
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~---- 288 (985)
+.++++.+|+++|.+ ++.+++|+|.++++++.++. +||+|++++..|+++...++. .|++++.++.
T Consensus 54 ~~~l~~~la~~~~~~--~v~~~~ggt~al~~~l~~l~----~gd~Vlv~~~~~~~~~~~~~~----~G~~~~~v~~~~~~ 123 (424)
T 2po3_A 54 VREFEERVAGLAGVR--HAVATCNATAGLQLLAHAAG----LTGEVIMPSMTFAATPHALRW----IGLTPVFADIDPDT 123 (424)
T ss_dssp HHHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHHT----CCSEEEEESSSCTHHHHHHHH----TTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcC----CCCEEEECCCccHHHHHHHHH----cCCEEEEEecCCCc
Confidence 456889999999986 58889999999888877653 569999999999999887653 5888888754
Q ss_pred -----hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCC---CCCcccceEEEecC-cc
Q 001990 289 -----KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK---PPGELGADIVVGSA-QR 358 (985)
Q Consensus 289 -----~~l~~-l~~~t~~V~v~~pn~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~---~p~~~GaDi~v~s~-k~ 358 (985)
+++++ +++++++|++++ ++|.+.|+++|.++|+++|+++++| +..+.|... +.+.+ .|++++|. |.
T Consensus 124 ~~~d~~~l~~~i~~~~~~v~~~~--~tG~~~~l~~i~~la~~~~~~li~D-ea~~~g~~~~~~~~~~~-~di~~~S~sk~ 199 (424)
T 2po3_A 124 GNLDPDQVAAAVTPRTSAVVGVH--LWGRPCAADQLRKVADEHGLRLYFD-AAHALGCAVDGRPAGSL-GDAEVFSFHAT 199 (424)
T ss_dssp SSBCHHHHGGGCCTTEEEEEEEC--GGGCCCCHHHHHHHHHHTTCEEEEE-CTTCTTCEETTEETTSS-SSEEEEECCTT
T ss_pred CCcCHHHHHHhhCcCCcEEEEEC--CCCCcCCHHHHHHHHHHcCCEEEEE-CccccCCeECCeecccc-cCEEEEeCCCC
Confidence 34555 677899999876 6899999999999999999999995 344443321 11222 58988886 33
Q ss_pred ccccCCCCCCceEEEEEc-hhhHhcCCCceeeeeecCCCCc-ceEEecccccccccccccCCCccchhHHHHHHHHHHHH
Q 001990 359 FGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKP-ALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAV 436 (985)
Q Consensus 359 lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~s~d~~g~~-~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~ 436 (985)
.+ +||+..|++.++ +++.+.+..... .+.. .+.. .+ .|+.... ..+ .+++ .
T Consensus 200 K~----l~~~~~G~~v~~~~~l~~~l~~~~~------~~~~~~~~~-----~~-----~g~~~~~--~~~---~aa~--~ 252 (424)
T 2po3_A 200 KA----VNAFEGGAVVTDDADLAARIRALHN------FGFDLPGGS-----PA-----GGTNAKM--SEA---AAAM--G 252 (424)
T ss_dssp SS----SCCSSCEEEEESCHHHHHHHHHHHB------TTTTCTTCC-----TT-----CCCBCCC--CHH---HHHH--H
T ss_pred CC----ccCCCCeEEEeCCHHHHHHHHHHHh------cCccccccc-----cc-----cCcCCCc--CHH---HHHH--H
Confidence 22 233456899888 677665421110 0000 0000 00 0111000 122 1111 1
Q ss_pred HcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCC---C--cceEEEecC------CHHHHHHHHHHcCceeeeecC-
Q 001990 437 YHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP---F--FDTVKVKCA------DAHAIASAAYKIEMNLRVVDS- 504 (985)
Q Consensus 437 ~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~---~--~~~~~i~~~------~~~~l~~~L~~~Gi~~~~~~~- 504 (985)
+...++++++.++..++++++++.|+++.++++...+ . +..+.+.++ ...++.+.|.++||.++....
T Consensus 253 l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~ 332 (424)
T 2po3_A 253 LTSLDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFSP 332 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHHSSCHHHHHHHHHHTTEECBCTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCccchhhHHHHHHHHHHCCCceecccCC
Confidence 1123567888899999999999999988338886421 1 234545544 278899999999998754211
Q ss_pred ------------------------CeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 505 ------------------------NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 505 ------------------------~~lris~~~~~t~edid~ll~~l~~ 529 (985)
..++++++.++|++|+++++++|..
T Consensus 333 ~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~ 381 (424)
T 2po3_A 333 GCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRL 381 (424)
T ss_dssp CGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHH
T ss_pred ccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1288888899999999999999974
No 343
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.63 E-value=3.5e-14 Score=164.77 Aligned_cols=272 Identities=12% Similarity=0.097 Sum_probs=182.2
Q ss_pred HHHHHHHHHhhC-----CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001990 214 LNFQTMIADLTG-----LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 214 ~e~q~~ia~L~g-----~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~ 288 (985)
.++++.+|++++ .+..++.++.|+|.+++.++.++. ++||+|+++...|+.+...++. .|++++.++.
T Consensus 99 ~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~---~~gd~vl~~~p~~~~~~~~~~~----~g~~~~~~~~ 171 (427)
T 3dyd_A 99 LSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLA---NPGQNILVPRPGFSLYKTLAES----MGIEVKLYNL 171 (427)
T ss_dssp HHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHC---CTTCEEEEEESCCTHHHHHHHH----TTCEEEEEEE
T ss_pred HHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhc---CCCCEEEEcCCCchhHHHHHHH----cCCEEEEEec
Confidence 357789999998 667789899999998888776653 2789999999999888777643 5777776543
Q ss_pred ----------hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEeccccc-c--C--CCCCCccc
Q 001990 289 ----------KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLAL-T--I--LKPPGELG 348 (985)
Q Consensus 289 ----------~~l~~-l~~~t~~V~v~~p-n~~G~i~d---l~~I~~~a~~~galliV~a~~~al-g--~--l~~p~~~G 348 (985)
+++++ +++++++|++.+| |++|.+.+ +++|+++|+++|+++++|. ..+. + . ..+...++
T Consensus 172 ~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~De-ay~~~~~~g~~~~~~~~~~ 250 (427)
T 3dyd_A 172 LPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADE-IYGDMVFSDCKYEPLATLS 250 (427)
T ss_dssp EGGGTTEECHHHHHSSCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEEC-TTTTCBCSSCCCCCGGGGC
T ss_pred ccccCCCCCHHHHHHHhccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEc-CchhhccCCCcCccHHHhC
Confidence 45666 7778999999998 78999998 9999999999999999953 2221 1 1 11112344
Q ss_pred ce---EEEecC-ccccccCCCCCCceEEEEEch-------hhHhcCCCceeeeeecCCCCcceEEecccccccccccccC
Q 001990 349 AD---IVVGSA-QRFGVPMGYGGPHAAFLATSQ-------EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKAT 417 (985)
Q Consensus 349 aD---i~v~s~-k~lg~P~~~GGP~~G~l~~~~-------~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~at 417 (985)
.| ++++|. |.|+.| |-.+|++++++ ++.+.+. ...+...+
T Consensus 251 ~~~~vi~~~S~sK~~~~~----G~riG~~~~~~~~~~~~~~i~~~l~-------------------------~~~~~~~~ 301 (427)
T 3dyd_A 251 TDVPILSCGGLAKRWLVP----GWRLGWILIHDRRDIFGNEIRDGLV-------------------------KLSQRILG 301 (427)
T ss_dssp SSCCEEEEEESTTTSSCG----GGCCEEEEEECSTTSSHHHHHHHHH-------------------------HHHHHHCC
T ss_pred CCCcEEEEeeccccCCCc----CcceEEEEecCcchhhHHHHHHHHH-------------------------HHHhccCC
Confidence 44 667776 776543 22368888763 2322220 00000011
Q ss_pred CCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCC--CCcceEEEec---C--C-HHHHH
Q 001990 418 SNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL--PFFDTVKVKC---A--D-AHAIA 489 (985)
Q Consensus 418 sni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~~~~~i~~---~--~-~~~l~ 489 (985)
.|. ....++.+ .+.....+.++++.++..++.+++.+.|+++.|+++..+ ..+--+.+.. + . ..++.
T Consensus 302 ~~~---~~~~a~~~--~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~ 376 (427)
T 3dyd_A 302 PCT---IVQGALKS--ILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEMEHFPEFENDVEFT 376 (427)
T ss_dssp SCH---HHHHHHHH--HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCSBTTEEEEEECGGGCTTCSSHHHHH
T ss_pred CCH---HHHHHHHH--HHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEecCHhhcCCCCCHHHHH
Confidence 111 11212222 234445667888999999999999999999833887532 2222223321 1 2 67888
Q ss_pred HHHH-HcCceeeee----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 490 SAAY-KIEMNLRVV----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 490 ~~L~-~~Gi~~~~~----~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
++|. ++||.+... .++.+|++++ +++++++++++.|..
T Consensus 377 ~~l~~~~gV~v~~g~~~~~~~~iRis~~--~~~e~i~~~l~~l~~ 419 (427)
T 3dyd_A 377 ERLVAEQSVHCLPATCFEYPNFIRVVIT--VPEVMMLEACSRIQE 419 (427)
T ss_dssp HHHHHHHCEECEEGGGGTCTTEEEEESC--SCHHHHHHHHHHHHH
T ss_pred HHHHHHCCEEEECCcccCCCCeEEEEEC--CCHHHHHHHHHHHHH
Confidence 8885 789988542 2588999986 789999999999874
No 344
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.63 E-value=2.2e-15 Score=173.88 Aligned_cols=287 Identities=11% Similarity=0.050 Sum_probs=175.2
Q ss_pred HHHHHHHHHh-CC-----Cccc-ee--cChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEE
Q 001990 636 NLGEWLCTIT-GF-----DSFS-LQ--PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVS 706 (985)
Q Consensus 636 el~~~la~l~-G~-----~~~~-~~--~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~ 706 (985)
++++.+++++ +. +... ++ +++|++++..+....+.+ .++++|+++.+.|..+...++..|++++.
T Consensus 77 ~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~------~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~ 150 (412)
T 1yaa_A 77 SLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKF------FPDKLVYLSKPTWANHMAIFENQGLKTAT 150 (412)
T ss_dssp HHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH------CTTCCEEEEESCCTTHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHh------CCCCEEEEeCCCCccHHHHHHHcCceEEE
Confidence 4555566555 21 2223 44 566666654432222222 36688999888887777778889999999
Q ss_pred EeC-CC-CCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccc-cccC-----
Q 001990 707 VGT-DA-KGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMN-AQVG----- 775 (985)
Q Consensus 707 v~~-~~-~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~--~di~eI~~la~~~g~lliVD~a~~~-~~~g----- 775 (985)
+|. ++ ++.+|+++|+++++++++.+.++++++| |++|.+. .++++|+++|+++|+++++|+++.. ..++
T Consensus 151 v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~ 230 (412)
T 1yaa_A 151 YPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDA 230 (412)
T ss_dssp EECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHT
T ss_pred EeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchh
Confidence 998 43 5789999999999854234566666888 4689885 2578899999999999999999742 1111
Q ss_pred --CCCCCcCCC----cEEEeCCcccccccCCCCCCcceeee--e-----ccc----ccCcCCCCccccCCCCCCCCCCCC
Q 001990 776 --LTSPGYIGA----DVCHLNLHKTFCIPHGGGGPGMGPIG--V-----KKH----LAPFLPSHPVVSTGGIPAPEKSQP 838 (985)
Q Consensus 776 --~~~~g~~g~----Di~~~s~hKtl~~p~g~GGPg~G~l~--~-----~~~----l~~~lpg~~~g~~~~~~~~~~~~~ 838 (985)
+......+. ++++.|++|+|+. .|.++|+++ + +++ +...+.... . ..
T Consensus 231 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~----~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~--~----------~~ 294 (412)
T 1yaa_A 231 YAVRLGVEKLSTVSPVFVCQSFAKNAGM----YGERVGCFHLALTKQAQNKTIKPAVTSQLAKII--R----------SE 294 (412)
T ss_dssp HHHHHHHHHTTTTCCEEEEEECTTTSCC----GGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHH--H----------TT
T ss_pred HHHHHHHhcCCCCcceEEEeccCCCCCC----cCCcceEEEEEecCCCCCHHHHHHHHHHHHHHH--h----------hc
Confidence 000011233 4778899998842 255689998 6 444 444332100 0 00
Q ss_pred CCCcccccchhhhHHHHHHHHHHHhc-----hhhHHHHHHHHHHHHHHHHHHHhc-c----CCeeEcCCCCceeEEEEEE
Q 001990 839 LGTIAAAPWGSALILPISYTYIAMMG-----SKGLTEASKIAILNANYMAKRLEK-H----YPILFRGVNGTVAHEFIVD 908 (985)
Q Consensus 839 t~~i~s~~~g~~~~~~~A~a~l~~lg-----~~gl~~~~~~~~~~a~~l~~~L~~-~----~~i~~~g~~~~~~~~~vv~ 908 (985)
+... + .....++.+++.... .+.+.+..++..++++++.+.|++ + +.+. .+.+.. +++
T Consensus 295 ~~~~--~----~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~~~~~---~~~- 362 (412)
T 1yaa_A 295 VSNP--P----AYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHI--VNQCGM---FSF- 362 (412)
T ss_dssp TSSC--C----HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHH--HHCCSS---EEE-
T ss_pred cCCC--C----hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeee--ccCceE---EEe-
Confidence 1111 1 111122223333221 234566667777888999999987 3 3332 111222 111
Q ss_pred ecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 909 LRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 909 ~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
. +.+...+.+.|.++||.+.. .+||+++. .|++|++ +++++|++++++
T Consensus 363 ~-------~~~~~~~~~~l~~~gi~v~~-------~~Ris~~~-~~~~~i~---~~~~~l~~~~~~ 410 (412)
T 1yaa_A 363 T-------GLTPQMVKRLEETHAVYLVA-------SGRASIAG-LNQGNVE---YVAKAIDEVVRF 410 (412)
T ss_dssp C-------CCCHHHHHHHHHHHCEECCT-------TSEEEGGG-CCTTTHH---HHHHHHHHHHHH
T ss_pred e-------CCCHHHHHHHHHhCCEEecc-------CcEEEEcc-CCHhHHH---HHHHHHHHHHHh
Confidence 1 24556675556678998752 47999874 5899999 999999988764
No 345
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.63 E-value=4.7e-14 Score=158.65 Aligned_cols=273 Identities=16% Similarity=0.091 Sum_probs=183.3
Q ss_pred HHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHH--HHHhhcCC-CeEEEEeCc
Q 001990 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDI--CITRADGF-DIKVVVSDL 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~--~~~~a~~~-gi~v~~~~~ 288 (985)
...++++++++++| +..++.+++|||.++++++.++. ++||+|+++...|+++... +... . |.+++.++.
T Consensus 44 ~~~~l~~~la~~~g-~~~~v~~~~~gt~a~~~al~~~~---~~gd~vi~~~~~~~~~~~~~~~~~~---~~g~~~~~v~~ 116 (356)
T 1v72_A 44 LTAQVKRKFCEIFE-RDVEVFLVPTGTAANALCLSAMT---PPWGNIYCHPASHINNDECGAPEFF---SNGAKLMTVDG 116 (356)
T ss_dssp HHHHHHHHHHHHHT-SCCEEEEESCHHHHHHHHHHTSC---CTTEEEEECTTSHHHHSSTTHHHHH---TTSCEEEECCC
T ss_pred HHHHHHHHHHHHhC-CCCcEEEeCCccHHHHHHHHHhc---CCCCEEEEcCccchhhhhchHHHHH---hCCcEEEEecC
Confidence 34567889999999 44446788999988777666542 3789999999999887655 4332 2 778887764
Q ss_pred -------hhhhc--cCC-------CEeEEEEEcCCCCee---eccHHHHHHHHHhCCcEEEEEecccccc---C-CCCCC
Q 001990 289 -------KDIDY--KSG-------DVCGVLVQYPGTEGE---VLDYGDFIKNAHANGVKVVMATDLLALT---I-LKPPG 345 (985)
Q Consensus 289 -------~~l~~--l~~-------~t~~V~v~~pn~~G~---i~dl~~I~~~a~~~galliV~a~~~alg---~-l~~p~ 345 (985)
+++++ +.+ ++++|++++|+.+|. .+++++|.++|+++|+++++|. ....+ . -..+.
T Consensus 117 ~~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~tG~~~~~~~l~~i~~~~~~~~~~li~D~-a~~~~~~~~~~~~~~ 195 (356)
T 1v72_A 117 PAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDG-SRFANALVSLGCSPA 195 (356)
T ss_dssp GGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEE-TTHHHHHHHHTCCTT
T ss_pred CCCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCeEEEEc-hhhHhHhccCCCCHH
Confidence 34543 333 689999999877998 6789999999999999999953 22210 0 01222
Q ss_pred c----ccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCc
Q 001990 346 E----LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNI 420 (985)
Q Consensus 346 ~----~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni 420 (985)
. .++|+++.+. |+ +.|. |.|++++++++++++.. + +...++ .
T Consensus 196 ~~~~~~~~d~~~~s~sK~-g~~~-----G~g~~~~~~~~~~~~~~------------------~-------~~~~~~--~ 242 (356)
T 1v72_A 196 EMTWKAGVDALSFGATKN-GVLA-----AEAIVLFNTSLATEMSY------------------R-------RKRAGH--L 242 (356)
T ss_dssp TTTGGGTCCEEEECCGGG-TCSS-----CEEEEESSGGGHHHHHH------------------H-------HHHTTC--C
T ss_pred HhhhhhcCCEEEEecccC-CCcC-----ccEEEEECHHHHhhHHH------------------H-------hhccCc--h
Confidence 2 4789998887 65 4332 45788888877665410 0 000111 1
Q ss_pred cchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecCCHHHHHHHHHHcCceee
Q 001990 421 CTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCADAHAIASAAYKIEMNLR 500 (985)
Q Consensus 421 ~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~~~~l~~~L~~~Gi~~~ 500 (985)
.+ .+..+..++ +..+..+.+.++.++..++++++++.|+++.|+++..+.....+.+..+ .++.++|.++||.+.
T Consensus 243 ~~-~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~--~~~~~~l~~~gi~v~ 317 (356)
T 1v72_A 243 SS-KMRFLSAQI--DAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD--SAMIDALLKAGFGFY 317 (356)
T ss_dssp CS-STHHHHHHH--HHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC--HHHHHHHHHTTCBCB
T ss_pred hh-hHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEEEcC--HHHHHHHHhcCeEEe
Confidence 11 111222222 2444444566777888899999999999873388764332333444544 478889999999876
Q ss_pred e--ecCCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001990 501 V--VDSNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 501 ~--~~~~~lris~~~~~t~edid~ll~~l~~~ 530 (985)
. ..++.+|++++..+|++|+++++++|...
T Consensus 318 ~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 349 (356)
T 1v72_A 318 HDRWGPNVVRFVTSFATTAEDVDHLLNQVRLA 349 (356)
T ss_dssp CSSSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred ccccCCCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 3 22578999999999999999999999753
No 346
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.63 E-value=7.1e-15 Score=172.22 Aligned_cols=161 Identities=19% Similarity=0.198 Sum_probs=125.3
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---h
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---K 289 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~---~ 289 (985)
..++++.+++++|.+ .+.++.+|+.++.+++. . + ++||+||+++..|+++...+...++..|++++.++. +
T Consensus 135 ~~~l~~~la~~~g~~--~~i~~~sGt~al~~~l~-~-~--~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~ 208 (464)
T 1ibj_A 135 RDALESLLAKLDKAD--RAFCFTSGMAALSAVTH-L-I--KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLD 208 (464)
T ss_dssp HHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHT-T-S--CTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHH
T ss_pred HHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHH-H-h--CCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCCCHH
Confidence 445778999999986 46677888876655432 1 2 388999999999999988887667778999999875 4
Q ss_pred hhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCCCCcccceEEEecC-ccccccCCCC
Q 001990 290 DIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGELGADIVVGSA-QRFGVPMGYG 366 (985)
Q Consensus 290 ~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~p~~~GaDi~v~s~-k~lg~P~~~G 366 (985)
++++ ++++|++|++.+| |.+|.+.|+++|+++||++|+++++| +.++.|....+.++|+|++++|. |+|++|.+
T Consensus 209 ~l~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livD-ea~~~g~~~~~~~~~~div~~S~sK~~~g~~G-- 285 (464)
T 1ibj_A 209 EVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVD-NSIMSPVLSRPLELGADIVMHSATKFIAGHSD-- 285 (464)
T ss_dssp HHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEE-CTTTCTTTCCGGGTTCSEEEEETTTTTTCSSC--
T ss_pred HHHHHhccCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEE-CCCcccccCChhhcCCEEEEECCcccccCCCC--
Confidence 5666 7889999999998 67999999999999999999999995 44555555456678999999998 87865422
Q ss_pred CCceEEEEEch-hhHhcC
Q 001990 367 GPHAAFLATSQ-EYKRMM 383 (985)
Q Consensus 367 GP~~G~l~~~~-~~~~~l 383 (985)
--+|++++++ ++.+.+
T Consensus 286 -l~~G~l~~~~~~l~~~l 302 (464)
T 1ibj_A 286 -VMAGVLAVKGEKLAKEV 302 (464)
T ss_dssp -CCCEEEEECSHHHHHHH
T ss_pred -CcEEEEEEChHHHHHHH
Confidence 1238898885 665554
No 347
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.63 E-value=1.8e-13 Score=156.32 Aligned_cols=324 Identities=15% Similarity=0.143 Sum_probs=200.2
Q ss_pred HHHHHHHHHHHcCCCccceecCCCCCCCCCcHHHHHHHHhC--CccccccCCChhhHhhHHHHHHHHHHHHHHHhh----
Q 001990 151 SQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMEN--PAWYTQYTPYQAEIAQGRLESLLNFQTMIADLT---- 224 (985)
Q Consensus 151 ~e~~~~~~~~~~~n~~~~~~lG~g~~~~~~p~~v~~~i~~~--~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~---- 224 (985)
.++.+...++...+....+ ++.|..+...|+.+.+.+... .. ...|.+. +|.. ++++.+|+++
T Consensus 17 ~~~~~~~~~~~~~~~~~i~-l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~-----~g~~----~lr~~ia~~~~~~~ 85 (385)
T 1b5p_A 17 VAVNAKALELRRQGVDLVA-LTAGEPDFDTPEHVKEAARRALAQG-KTKYAPP-----AGIP----ELREALAEKFRREN 85 (385)
T ss_dssp HHHHHHHHHHHHTTCCCEE-CCCSSCSSCCCHHHHHHHHHHHHTT-CCSCCCT-----TCCH----HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCEEE-ecCCCCCCCCCHHHHHHHHHHHhcC-CCCCCCC-----CCCH----HHHHHHHHHHHHHh
Confidence 3455555555443333222 344544444566554343321 11 2344332 2222 2444555544
Q ss_pred CC--CCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----------hhhh
Q 001990 225 GL--PMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----------KDID 292 (985)
Q Consensus 225 g~--~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~----------~~l~ 292 (985)
|. ++.++.+++|+|.+++.++.++ .. +||+|+++...|+.+...++. .|.+++.++. ++++
T Consensus 86 g~~~~~~~i~~t~g~~~al~~~~~~l-~~--~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~~~l~ 158 (385)
T 1b5p_A 86 GLSVTPEETIVTVGGSQALFNLFQAI-LD--PGDEVIVLSPYWVSYPEMVRF----AGGVVVEVETLPEEGFVPDPERVR 158 (385)
T ss_dssp CCCCCGGGEEEESHHHHHHHHHHHHH-CC--TTCEEEEEESCCTHHHHHHHH----TTCEEEEEECCGGGTTCCCHHHHH
T ss_pred CCCCChHHEEEcCChHHHHHHHHHHh-cC--CCCEEEEcCCCchhHHHHHHH----cCCEEEEeecCcccCCCCCHHHHH
Confidence 54 4568888999998888877665 23 889999999999988887653 5777777654 2455
Q ss_pred c-cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEeccccccCC--C--CCCcc--cceEEEecC-cccc
Q 001990 293 Y-KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTIL--K--PPGEL--GADIVVGSA-QRFG 360 (985)
Q Consensus 293 ~-l~~~t~~V~v~~p-n~~G~i~---dl~~I~~~a~~~galliV~a~~~alg~l--~--~p~~~--GaDi~v~s~-k~lg 360 (985)
+ +++++++|++.+| |++|.+. ++++|+++|+++|+++++|. ..+.... . +...+ +.+++++|. |.++
T Consensus 159 ~~l~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~ 237 (385)
T 1b5p_A 159 RAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDE-IYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFA 237 (385)
T ss_dssp TTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC-TTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTT
T ss_pred HhcCCCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEc-cchhcccCCCCCCHHHcCCCCEEEEEechhhcC
Confidence 5 6778999999998 6899984 59999999999999999953 3332111 1 11223 668889887 8775
Q ss_pred ccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHH--c
Q 001990 361 VPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVY--H 438 (985)
Q Consensus 361 ~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~--~ 438 (985)
.| | -.+|++++++++++.+.. . +...+.+..+ ....+..+++ .. .
T Consensus 238 ~~-G---~RiG~~~~~~~~~~~l~~-------------------------~-~~~~~~~~~~-~~~~a~~~~l--~~~~~ 284 (385)
T 1b5p_A 238 MT-G---WRIGYACGPKEVIKAMAS-------------------------V-SRQSTTSPDT-IAQWATLEAL--TNQEA 284 (385)
T ss_dssp CG-G---GCCEEEECCHHHHHHHHH-------------------------H-HHTTTCSCCH-HHHHHHHHHH--HCHHH
T ss_pred Cc-c---cceEEEEeCHHHHHHHHH-------------------------H-HhhccCCCCH-HHHHHHHHHH--hCCCc
Confidence 33 1 127999998877665410 0 1112222211 1111222221 11 0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecC----CHHHHHHHHHHcCceeeee----cCCeEEEE
Q 001990 439 GPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA----DAHAIASAAYKIEMNLRVV----DSNTVTAS 510 (985)
Q Consensus 439 g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~----~~~~l~~~L~~~Gi~~~~~----~~~~lris 510 (985)
+.+.++++.++..++.+++.+.|+++| +++..+....-+.+..+ +..++.+.|.++||.+... .++.+|+|
T Consensus 285 ~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis 363 (385)
T 1b5p_A 285 SRAFVEMAREAYRRRRDLLLEGLTALG-LKAVRPSGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAAFGHVRLS 363 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-CCBCCCSBTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTCTTEEEEE
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHCC-CeecCCCeeEEEEEecCCCCCCHHHHHHHHHHCCeEEecccccCCCCeEEEE
Confidence 234577788888899999999998885 77653211111223343 2788999999999987542 14789999
Q ss_pred eccCCCHHHHHHHHHHHhC
Q 001990 511 FDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 511 ~~~~~t~edid~ll~~l~~ 529 (985)
++ ++++++++.++.|..
T Consensus 364 ~~--~~~~~i~~~l~~l~~ 380 (385)
T 1b5p_A 364 YA--TSEENLRKALERFAR 380 (385)
T ss_dssp CC--SCHHHHHHHHHHGGG
T ss_pred ec--CCHHHHHHHHHHHHH
Confidence 87 789999999998864
No 348
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.62 E-value=3.8e-14 Score=161.21 Aligned_cols=270 Identities=12% Similarity=0.078 Sum_probs=181.2
Q ss_pred HHHHHHHHHhhC--CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001990 214 LNFQTMIADLTG--LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 214 ~e~q~~ia~L~g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~--- 288 (985)
.++++.+++.+| .++.++.+++|+|.++++++.++. . +||+|+++...|+++...++. .|.+++.++.
T Consensus 66 ~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~l~-~--~gd~vl~~~~~~~~~~~~~~~----~g~~~~~~~~~~~ 138 (383)
T 3kax_A 66 DIICNWTKKQYNWDIQKEWIVFSAGIVPALSTSIQAFT-K--ENESVLVQPPIYPPFFEMVTT----NNRQLCVSPLQKQ 138 (383)
T ss_dssp HHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHC-C--TTCEEEECSSCCHHHHHHHHH----TTCEEEECCCEEE
T ss_pred HHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhC-C--CCCEEEEcCCCcHHHHHHHHH----cCCEEEeccceec
Confidence 345578888888 567789899999998888776652 2 789999999999998877653 5777777653
Q ss_pred --------hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEeccccccCCC-----CCCc----
Q 001990 289 --------KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILK-----PPGE---- 346 (985)
Q Consensus 289 --------~~l~~-l~~~t~~V~v~~p-n~~G~i~d---l~~I~~~a~~~galliV~a~~~alg~l~-----~p~~---- 346 (985)
+++++ +++++++|++.+| |.+|.+.+ +++|+++|+++|+++++|. ..+..... +...
T Consensus 139 ~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De-~~~~~~~~g~~~~~~~~~~~~ 217 (383)
T 3kax_A 139 NDTYAIDFEHLEKQFQQGVKLMLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADE-IHSDIIYADHTHTPFASLSEE 217 (383)
T ss_dssp TTEEECCHHHHHHHHTTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEEC-TTTTCBCTTCCCCCGGGSCHH
T ss_pred CCcEEEcHHHHHHHhCcCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEEc-cccccccCCCCceeHhhcCcc
Confidence 34555 7788999999988 67999865 6777777999999999952 33321111 1112
Q ss_pred -ccceEEEecC-ccccccCCCCCCceEEEEE-chhhHhcCCCceeeeeecCCCCcceEEeccccccccccccc--CCCcc
Q 001990 347 -LGADIVVGSA-QRFGVPMGYGGPHAAFLAT-SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKA--TSNIC 421 (985)
Q Consensus 347 -~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~-~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~a--tsni~ 421 (985)
.+.+++++|. |.++.| |..+|++.+ ++++.+.+... +...+ +.|.
T Consensus 218 ~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~- 267 (383)
T 3kax_A 218 LAARTITCMAPSKTFNIA----GLQASIIIIPNEKLRQAFTSI-------------------------QYRQGFHGLNI- 267 (383)
T ss_dssp HHTTEEEEECSHHHHTCG----GGCCEEEECCCHHHHHHHHHH-------------------------HHHTTCCCCCH-
T ss_pred ccCcEEEEEEChhhccCc----chhheEEEeCCHHHHHHHHHH-------------------------HhhcccCCCCH-
Confidence 2556889887 888633 334688887 56666554100 00001 1111
Q ss_pred chhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhc-CCCEEEcCCCCcceEEEecC----CHHHHHHHHH-Hc
Q 001990 422 TAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQGLPFFDTVKVKCA----DAHAIASAAY-KI 495 (985)
Q Consensus 422 t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~~~~~~~~~~i~~~----~~~~l~~~L~-~~ 495 (985)
....+..+++ ..+.+.++++.++..++.+++.+.|++ ++++++......-.+.+.++ ...++.+.|. ++
T Consensus 268 --~~~~a~~~~l---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 342 (383)
T 3kax_A 268 --FAYTAMQSAY---TECNDWLNEIRFYIEDNAKFACEYIKDHIPTLSVMKPEGSFLLWIDCSALNLSQDERTKLLEEKG 342 (383)
T ss_dssp --HHHHHHHHHT---TTCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCCSBSSEEEEECGGGCCCHHHHHHHHHHTS
T ss_pred --HHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCceEEEEEEccccCCCHHHHHHHHHhhC
Confidence 1222222221 223455788889999999999999988 54488764321111223332 2789999998 68
Q ss_pred Cceeeee------cCCeEEEEeccCCCHHHHHHHHHHHh
Q 001990 496 EMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 496 Gi~~~~~------~~~~lris~~~~~t~edid~ll~~l~ 528 (985)
||.++.. .++.+|++++ +++++++++++.|.
T Consensus 343 gi~v~~g~~~~~~~~~~iRi~~~--~~~~~i~~~l~~l~ 379 (383)
T 3kax_A 343 KIIVEPGEKYGLGGEEHIGINIG--CPRSVLEEILNRLR 379 (383)
T ss_dssp CEECEESGGGCTTCTTEEEEECS--SCHHHHHHHHHHHH
T ss_pred CEEeECchhhcCCCCCeEEEEEc--CCHHHHHHHHHHHH
Confidence 9988642 1488999988 58999999999886
No 349
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.62 E-value=1e-13 Score=155.24 Aligned_cols=292 Identities=10% Similarity=0.059 Sum_probs=195.1
Q ss_pred cCCCCCCCCCcHHHHHHHHhCC--ccccccCCChhhHhhHHHHHHHHHHHHHHHhhC---CCCcceeeccchHHHHHHHH
Q 001990 171 IGMGYYNTHVPPVILRNIMENP--AWYTQYTPYQAEIAQGRLESLLNFQTMIADLTG---LPMSNASLLDEGTAAAEAMA 245 (985)
Q Consensus 171 lG~g~~~~~~p~~v~~~i~~~~--~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g---~~~~~~sl~~~~ta~~ea~~ 245 (985)
++.|.++...|+.+.+++.+.- .-...|.. .+ ..++++.+|+++| .++.++.+++|+|.+++.++
T Consensus 24 l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~----~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~ 93 (335)
T 1uu1_A 24 LALNENPFPFPEDLVDEVFRRLNSDALRIYYD------SP----DEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMM 93 (335)
T ss_dssp ESSCCCSSCCCHHHHHHHHHTCCGGGGGSCCC------SS----CHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC------Cc----hHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHH
Confidence 3555555556677765665532 11222321 11 3457789999999 77788989999998877766
Q ss_pred HHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCchh-----hhccCCCEeEEEEEcC-CCCeeeccHHHHH
Q 001990 246 MCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLKD-----IDYKSGDVCGVLVQYP-GTEGEVLDYGDFI 319 (985)
Q Consensus 246 ~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~~~-----l~~l~~~t~~V~v~~p-n~~G~i~dl~~I~ 319 (985)
.++ ||+|+++ ..|+.+...++. .|.+++.++.++ ++++ +++++|++.+| |.+|.+.|.+++.
T Consensus 94 ~~~------gd~Vl~~-p~y~~~~~~~~~----~g~~~~~v~~~~~~~~d~~~l-~~~~~v~l~~p~nptG~~~~~~~l~ 161 (335)
T 1uu1_A 94 LMF------DRSVFFP-PTYSCYRIFAKA----VGAKFLEVPLTKDLRIPEVNV-GEGDVVFIPNPNNPTGHVFEREEIE 161 (335)
T ss_dssp HHS------SEEEECS-SSCHHHHHHHHH----HTCEEEECCCCTTSCCCCCCC-CTTEEEEEESSCTTTCCCCCHHHHH
T ss_pred HHh------CCcEEEC-CCcHHHHHHHHH----cCCeEEEeccCCCCCCCHHHc-CCCCEEEEeCCCCCCCCCCCHHHHH
Confidence 553 5899999 999998877643 488888887631 2224 57899998988 6899999999999
Q ss_pred HHHHhCCcEEEEEecccc-ccC---CCCCCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecC
Q 001990 320 KNAHANGVKVVMATDLLA-LTI---LKPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDS 394 (985)
Q Consensus 320 ~~a~~~galliV~a~~~a-lg~---l~~p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~ 394 (985)
++++..| ++++| +..+ +.. +...+.++.|++++|. |.++.| |..+|++++++++++.+...
T Consensus 162 ~l~~~~~-~li~D-e~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~l~~~-------- 227 (335)
T 1uu1_A 162 RILKTGA-FVALD-EAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLA----AQRVGYVVASEKFIDAYNRV-------- 227 (335)
T ss_dssp HHHHTTC-EEEEE-CTTHHHHCCCCGGGGGTCSSEEEEEESTTTTTCG----GGCCEEEEECHHHHHHHHHH--------
T ss_pred HHHHhCC-EEEEE-CcchhhcchhHHHHhhhCCCEEEEecchhhcCCc----ccCeEEEEeCHHHHHHHHHh--------
Confidence 9999998 77774 3333 211 1112346778999997 877532 23469999988877654100
Q ss_pred CCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCC
Q 001990 395 SGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPF 474 (985)
Q Consensus 395 ~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~ 474 (985)
+...+.|. ....+..++ +.. .+.++++.++..++.+++.+.|+++| +++....
T Consensus 228 ------------------~~~~~~~~---~~~~~~~~~--l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~- 280 (335)
T 1uu1_A 228 ------------------RLPFNVSY---VSQMFAKVA--LDH--REIFEERTKFIVEERERMKSALREMG-YRITDSR- 280 (335)
T ss_dssp ------------------SCTTCSCH---HHHHHHHHH--HHT--HHHHHHHHHHHHHHHHHHHHHHHHHT-CCBCCCC-
T ss_pred ------------------cCCCCcCH---HHHHHHHHH--hCC--HHHHHHHHHHHHHHHHHHHHHHHHCC-cEEcCCC-
Confidence 00001111 112222222 222 34578888899999999999998876 7654321
Q ss_pred cceEEEecCC--HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 475 FDTVKVKCAD--AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 475 ~~~~~i~~~~--~~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
..-+.+..++ ..++.+.|.++||.+.. .++.+|+|++ +.+|+++++++|+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~gi~v~~-~~~~iRis~~---~~~~i~~~~~~l~~ 333 (335)
T 1uu1_A 281 GNFVFVFMEKEEKERLLEHLRTKNVAVRS-FREGVRITIG---KREENDMILRELEV 333 (335)
T ss_dssp SSEEEEECCTHHHHHHHHHHHHHTEEEEE-ETTEEEEECC---CHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCHHHHHHHHHHCCEEEEE-CCCeEEEEeC---CHHHHHHHHHHHHh
Confidence 2234566664 67899999999999876 4678999985 57899999999974
No 350
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.62 E-value=1.2e-14 Score=167.66 Aligned_cols=287 Identities=13% Similarity=0.069 Sum_probs=169.3
Q ss_pred HHHHHHHHHh-CCC-----ccce---ecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEE
Q 001990 636 NLGEWLCTIT-GFD-----SFSL---QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVS 706 (985)
Q Consensus 636 el~~~la~l~-G~~-----~~~~---~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~ 706 (985)
++++.+++++ |.+ ...+ .+.+|+++...+..+++.+ ..++++|+++.+.|..+...++..|.+++.
T Consensus 83 ~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~-----~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~ 157 (409)
T 4eu1_A 83 SFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRF-----VANCNRIYGPDVGYPNHESIFAKAGMELTP 157 (409)
T ss_dssp HHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGT-----SSSCCEEEEESSCCTHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHh-----cCCCCEEEEeCCCcHhHHHHHHHcCCeEEE
Confidence 5666666654 654 2222 3556665553333333322 136789999999888887888899999999
Q ss_pred EeCC--CCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-cCC----
Q 001990 707 VGTD--AKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-VGL---- 776 (985)
Q Consensus 707 v~~~--~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~--~di~eI~~la~~~g~lliVD~a~~~~~-~g~---- 776 (985)
+|.+ +++.+|+++|++++++++++++++++++| |++|.+. .++++|+++|+++|+++++|+++.... .+.
T Consensus 158 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~ 237 (409)
T 4eu1_A 158 YSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDA 237 (409)
T ss_dssp ECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHT
T ss_pred EEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccch
Confidence 9983 45789999999999765456777777888 5789886 147779999999999999999874211 110
Q ss_pred CC----CCcCCCcEEEeCCcccccccCCCCCCcceee---eeccc----ccCcCCCCccccCCCCCCCCCCCCCCCcccc
Q 001990 777 TS----PGYIGADVCHLNLHKTFCIPHGGGGPGMGPI---GVKKH----LAPFLPSHPVVSTGGIPAPEKSQPLGTIAAA 845 (985)
Q Consensus 777 ~~----~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l---~~~~~----l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~ 845 (985)
.. .+...-.+++.|++|+|+. .|.++|++ +.+++ +...+.... ...+.+.+
T Consensus 238 ~~~~~~~~~~~~~i~~~S~SK~~g~----~G~riG~~~~v~~~~~~~~~l~~~~~~~~------------~~~~~~~~-- 299 (409)
T 4eu1_A 238 FVPRHLVDMVPNLIVAQSFSKNFGL----YGHRCGALHISTASAEEAKRLVSQLALLI------------RPMYNNPP-- 299 (409)
T ss_dssp HHHHHHHTTSSCCEEEEECTTTSSC----GGGCCEEEEEECSSHHHHHHHHHHHHHHH------------HHHHSSCC--
T ss_pred HHHHHHHhhCCcEEEEecCcccccC----ccCCceEEEEEeCCHHHHHHHHHHHHHHH------------hhhcCCCC--
Confidence 00 0111223677788898854 36778996 44445 433321100 00011111
Q ss_pred cchhhhHHHHHHHHHHHhc-----hhhHHHHHHHHHHHHHHHHHHHhc-cCC--eeEcCCCCceeEEEEEEecCccccCC
Q 001990 846 PWGSALILPISYTYIAMMG-----SKGLTEASKIAILNANYMAKRLEK-HYP--ILFRGVNGTVAHEFIVDLRGLKNTAG 917 (985)
Q Consensus 846 ~~g~~~~~~~A~a~l~~lg-----~~gl~~~~~~~~~~a~~l~~~L~~-~~~--i~~~g~~~~~~~~~vv~~~~~~~~~g 917 (985)
.....++..++.... .+.+.+..++..++++++.+.|++ +.. +.+..+++.. +.+ . +
T Consensus 300 ----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~---~~~-~-------~ 364 (409)
T 4eu1_A 300 ----LYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIERQVGM---MAY-T-------G 364 (409)
T ss_dssp ----HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHSCSS---EEE-C-------C
T ss_pred ----hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecCCceE---EEE-e-------C
Confidence 111112222232110 223455566777888899999987 311 1111111222 111 1 2
Q ss_pred CCHHHHHHHHH-HCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHH
Q 001990 918 IEPEDVAKRLM-DYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLT 972 (985)
Q Consensus 918 ~~~~~l~~~L~-e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~ 972 (985)
.+.+. ...|. ++||.+.. + .|++++. .+++||+ +++++|++++
T Consensus 365 ~~~~~-~~~ll~~~gv~v~p------~-~Ri~~~~-~~~~~i~---~~~~~l~~~l 408 (409)
T 4eu1_A 365 LTREQ-VELLRSEYHIYMTL------N-GRAAVSG-LNSTNVE---YVSQAIHNVT 408 (409)
T ss_dssp CCHHH-HHHHHHHHCEECCT------T-CEEEGGG-CCTTTHH---HHHHHHHHHH
T ss_pred CCHHH-HHHHHHcCCEEEcC------C-CEEEEEe-cCHhhHH---HHHHHHHHHh
Confidence 34444 55554 67998752 2 4788764 5667799 9999998764
No 351
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.62 E-value=3.5e-14 Score=162.27 Aligned_cols=280 Identities=12% Similarity=0.032 Sum_probs=180.3
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~---- 288 (985)
+.++++.+|+++|.+ ...++.+||.+++.++.+++.. +||+|+++...|+++...++ ..|++++.++.
T Consensus 40 ~~~l~~~la~~~~~~--~~i~~~sGt~al~~~l~~l~~~--~gd~Vi~~~~~~~~~~~~~~----~~g~~~~~v~~~~~~ 111 (388)
T 1b9h_A 40 VNSFEREFAAHHGAA--HALAVTNGTHALELALQVMGVG--PGTEVIVPAFTFISSSQAAQ----RLGAVTVPVDVDAAT 111 (388)
T ss_dssp HHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTTCC--TTCEEEEESSSCTHHHHHHH----HTTCEEEEECBCTTT
T ss_pred HHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcCCC--CcCEEEECCCccHHHHHHHH----HcCCEEEEEecCCCc
Confidence 456888999999987 3556677788877777665333 78999999999999988774 35888887764
Q ss_pred -----hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCC---CCCcccceEEEec--C-
Q 001990 289 -----KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK---PPGELGADIVVGS--A- 356 (985)
Q Consensus 289 -----~~l~~-l~~~t~~V~v~~pn~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~---~p~~~GaDi~v~s--~- 356 (985)
++|++ +++++++|+.. |.+|.+.|+++|.++|+++|+++++| +..+.|... +.+.+| |+.+.| .
T Consensus 112 ~~~d~~~l~~~i~~~~~~v~~~--n~tG~~~~l~~i~~la~~~~~~li~D-~a~~~g~~~~~~~~~~~~-~i~~~S~s~~ 187 (388)
T 1b9h_A 112 YNLDPEAVAAAVTPRTKVIMPV--HMAGLMADMDALAKISADTGVPLLQD-AAHAHGARWQGKRVGELD-SIATFSFQNG 187 (388)
T ss_dssp CCBCHHHHHHHCCTTEEEECCB--CGGGCCCCHHHHHHHHHHHTCCBCEE-CTTCTTCEETTEEGGGSS-SCEEEECCTT
T ss_pred CCCCHHHHHHhcCcCceEEEEe--CCccCcCCHHHHHHHHHHcCCEEEEe-cchhcCCccCCeeccccc-ceEEEEccCC
Confidence 34555 77889888822 56899999999999999999999995 344554322 224555 555555 4
Q ss_pred ccccccCCCCCCceEEEEEchh-h--HhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHH
Q 001990 357 QRFGVPMGYGGPHAAFLATSQE-Y--KRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 357 k~lg~P~~~GGP~~G~l~~~~~-~--~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~ 433 (985)
|.++ |+..|++.++++ + .+.+.. +.+ .|... .. ........|+++..+ .+. +++
T Consensus 188 K~l~------g~~~G~~~~~~~~~~~~~~~~~-~~~-----~~~~~-----~~-~~~~~~~~g~~~~~~--~~~---~a~ 244 (388)
T 1b9h_A 188 KLMT------AGEGGAVVFPDGETEKYETAFL-RHS-----CGRPR-----DD-RRYFHKIAGSNMRLN--EFS---ASV 244 (388)
T ss_dssp SSSC------SSSCEEEEECTTCHHHHHHHHH-HTB-----TTCCT-----TC-SSCCCCSCCCBCBCB--HHH---HHH
T ss_pred Cccc------CCCeEEEEECCHHHHHHHHHHH-HHh-----CCCCc-----cC-ccceeecccccCCcC--HHH---HHH
Confidence 4443 234588888865 5 343310 000 00000 00 000001123322111 111 111
Q ss_pred HHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCC-----CC-cceEEEecCC-----HHHHHHHHHHcCceeeee
Q 001990 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-----PF-FDTVKVKCAD-----AHAIASAAYKIEMNLRVV 502 (985)
Q Consensus 434 y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-----~~-~~~~~i~~~~-----~~~l~~~L~~~Gi~~~~~ 502 (985)
.... .+-+++..++..++++++.+.|+++.++++... +. ...+.+.+++ ..++.+.|.++||.++..
T Consensus 245 ~~~~--~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~ 322 (388)
T 1b9h_A 245 LRAQ--LARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAA 322 (388)
T ss_dssp HHHH--HTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEEC
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcCcccHHHHHHHHHHCCCCcccc
Confidence 1111 234667778888899999999998833887642 11 2345666652 567999999999977432
Q ss_pred c---------------------------------CCeEEEEeccCC-CHHHHHHHHHHHhC
Q 001990 503 D---------------------------------SNTVTASFDETT-TLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ~---------------------------------~~~lris~~~~~-t~edid~ll~~l~~ 529 (985)
. .+.+|++++..+ |++|+++++++|..
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~~ 383 (388)
T 1b9h_A 323 FRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIAD 383 (388)
T ss_dssp CCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHH
T ss_pred cCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHHH
Confidence 1 125999999999 99999999999863
No 352
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.62 E-value=3.6e-15 Score=171.44 Aligned_cols=295 Identities=14% Similarity=0.081 Sum_probs=170.3
Q ss_pred HHHHHHHHHH--hC-CCccce-ecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcE-EEEEeC
Q 001990 635 NNLGEWLCTI--TG-FDSFSL-QPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK-IVSVGT 709 (985)
Q Consensus 635 ~el~~~la~l--~G-~~~~~~-~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~-v~~v~~ 709 (985)
.++++.++++ .| .+...+ +.++++++... + ++ .. .++++|+++.+.|..+...++..|.+ ++.+|.
T Consensus 78 ~~lr~~la~~l~~g~~~~~~v~~~~G~~~al~~-~--~~-~~-----~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~ 148 (400)
T 3asa_A 78 PALRQKLSEDFYRGFVDAKEIFISDGAKVDLFR-L--LS-FF-----GPNQTVAIQDPSYPAYLDIARLTGAKEIIALPC 148 (400)
T ss_dssp HHHHHHHHHTTSTTSSCGGGEEEESCHHHHHHH-H--HH-HH-----CSSCEEEEEESCCHHHHHHHHHTTCSEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCHHHEEEccChHHHHHH-H--HH-Hc-----CCCCEEEECCCCcHHHHHHHHHcCCcceEeccc
Confidence 4677888888 57 555444 44555554422 2 22 11 35688999887666665667788998 999998
Q ss_pred CCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccc-cccCC--CCCCcC-
Q 001990 710 DAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMN-AQVGL--TSPGYI- 782 (985)
Q Consensus 710 ~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~--di~eI~~la~~~g~lliVD~a~~~-~~~g~--~~~g~~- 782 (985)
++++..+.+ +++ + +++++|++++| |++|.+.+ ++++|+++|+++|+++++|+++.. ...+- .....+
T Consensus 149 ~~~~~~~~~-l~~-~----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 222 (400)
T 3asa_A 149 LQENAFFPE-FPE-D----THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIP 222 (400)
T ss_dssp CGGGTTCCC-CCT-T----CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGST
T ss_pred chhcCcccC-hhh-c----cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCC
Confidence 754332211 221 1 56888999998 57898862 377899999999999999999862 21111 111122
Q ss_pred ---CCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHH
Q 001990 783 ---GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTY 859 (985)
Q Consensus 783 ---g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~ 859 (985)
+.++++.|++|+|+. .|.++|++++++++..... ..+.. ........+.. +. +.....++.++
T Consensus 223 ~~~~~~i~~~s~sK~~g~----~GlriG~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~-~~----~~~~~~a~~~~ 288 (400)
T 3asa_A 223 DARFCAIEINSFSKPLGF----AGIRLGWTVIPQELTYADG-HFVIQ----DWERFLSTTFN-GA----SIPAQEAGVAG 288 (400)
T ss_dssp TGGGTEEEEEECCGGGTT----TTCCCEEEECCTTCBCTTS-CBHHH----HHHHHHHHHCC-CC----CHHHHHHHHHH
T ss_pred CCCCceEEEecchhhcCC----cchheeEEeeChhhccchh-hhHHH----HHHHHhccCcc-CC----ChHHHHHHHHH
Confidence 234888999999853 4677999999877632110 00000 00000000000 01 11112222333
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEE-ecCccccCCCCHHHHHHHHHH-CCCccCC
Q 001990 860 IAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVD-LRGLKNTAGIEPEDVAKRLMD-YGFHGPT 936 (985)
Q Consensus 860 l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~-~~~~~~~~g~~~~~l~~~L~e-~Gi~~~~ 936 (985)
+... .+.+..++..++++++.+.|++ ++.+. .+. +.. .+.++ ++ .+.+..++.+.|.+ +||.+..
T Consensus 289 l~~~---~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~~~-~~~--~~~~~~~~-----~~~~~~~~~~~l~~~~gv~v~~ 356 (400)
T 3asa_A 289 LSIL---PQLEAIHYYRENSDLLRKALLATGFEVF-GGE-HAP--YLWVKPTQ-----ANISDRDLFDFFLREYHIAITP 356 (400)
T ss_dssp HHHT---TTCHHHHHHHHHHHHHHHHHHHTTCEEE-ECS-SSS--EEEEECCC-----TTCCTTTHHHHHHHHHSEECEE
T ss_pred hCcH---HHHHHHHHHHHHHHHHHHHHHHCCCeee-CCC-Cce--EEEEeccC-----CCCCHHHHHHHHHHhCCEEEeC
Confidence 4321 3445556677888899999987 44432 221 112 23455 43 13455678888865 5998743
Q ss_pred C-CCC--CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHH
Q 001990 937 M-SWP--VPGTLMIEPTESESKVCHNREDLFFQILLSLTKFT 975 (985)
Q Consensus 937 ~-~~p--v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~ 975 (985)
. .+. .++.+|++. .++++|++ ++++.|++++++.
T Consensus 357 g~~f~~~~~~~iRis~--~~~~e~i~---~~l~~l~~~~~~~ 393 (400)
T 3asa_A 357 GIGFGRSGSGFVRFSS--LGKREDIL---AACERLQMAPALQ 393 (400)
T ss_dssp GGGGCGGGTTCEEEEC--CSCHHHHH---HHHHHHHC-----
T ss_pred hhHhCCCCCCEEEEEe--eCCHHHHH---HHHHHHHHHHHhh
Confidence 2 121 247899994 67899999 9999998887643
No 353
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.62 E-value=5.9e-14 Score=161.44 Aligned_cols=268 Identities=10% Similarity=0.063 Sum_probs=177.6
Q ss_pred HHHHHHHhhC------CCC-cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC-
Q 001990 216 FQTMIADLTG------LPM-SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD- 287 (985)
Q Consensus 216 ~q~~ia~L~g------~~~-~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~- 287 (985)
+++.+|++++ .++ .++.+++|+|.+++.++.++. . +||+|+++...|+.+...++. .|.+++.++
T Consensus 66 l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~-~--~gd~vl~~~p~~~~~~~~~~~----~g~~~~~~~~ 138 (410)
T 3e2y_A 66 LVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLV-D--PGDEVIIMVPFYDCYEPMVRM----AGAVPVFIPL 138 (410)
T ss_dssp HHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHC-C--TTCEEEEEESCCTTHHHHHHH----TTCEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhc-C--CCCEEEEeCCCchhhHHHHHH----cCCEEEEEec
Confidence 4455555554 445 578889999988888776652 2 789999999999988877653 466666553
Q ss_pred ------------------chhhhc-cCCCEeEEEEEcC-CCCeee---ccHHHHHHHHHhCCcEEEEEeccccccCCC--
Q 001990 288 ------------------LKDIDY-KSGDVCGVLVQYP-GTEGEV---LDYGDFIKNAHANGVKVVMATDLLALTILK-- 342 (985)
Q Consensus 288 ------------------~~~l~~-l~~~t~~V~v~~p-n~~G~i---~dl~~I~~~a~~~galliV~a~~~alg~l~-- 342 (985)
++++++ +++++++|++++| |.+|.+ +++++|+++|+++|+++++|. ..+.....
T Consensus 139 ~~~~~~g~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De-~~~~~~~~~~ 217 (410)
T 3e2y_A 139 RSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDE-VYEWLVYTGH 217 (410)
T ss_dssp EECCCCSSCCBGGGEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC-TTTTCBCTTC
T ss_pred cccccccccccccCCcCCHHHHHhhcCCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEh-hhhhcccCCC
Confidence 245555 7788999999998 689998 689999999999999999952 33221110
Q ss_pred -------CCCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEeccccccccccc
Q 001990 343 -------PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRD 414 (985)
Q Consensus 343 -------~p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre 414 (985)
-+..++.++++.|. |.|+.| |..+|++++++++++.+.. . +.
T Consensus 218 ~~~~~~~~~~~~~~~i~~~S~sK~~g~~----G~r~G~~~~~~~~~~~~~~-------------------------~-~~ 267 (410)
T 3e2y_A 218 THVKIATLPGMWERTITIGSAGKTFSVT----GWKLGWSIGPAHLIKHLQT-------------------------V-QQ 267 (410)
T ss_dssp CCCCGGGSTTCGGGEEEEEEHHHHSSCG----GGCCEEEECCHHHHHHHHH-------------------------H-HH
T ss_pred CCCCHHHcCCccCeEEEEecchhhcCCC----CceEEEEEECHHHHHHHHH-------------------------H-HH
Confidence 11234667888887 888633 3457999998887765410 0 00
Q ss_pred ccCCCccchhHHHHHHHHHHHH------HcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCC--CCcceEEEecCC--
Q 001990 415 KATSNICTAQALLANMAAMYAV------YHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL--PFFDTVKVKCAD-- 484 (985)
Q Consensus 415 ~atsni~t~~~l~a~~aa~y~~------~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~~~~~i~~~~-- 484 (985)
..+.+. +.....+..+++ . ....+.++++.++..++.+++.+.|+++| +++..+ ..+ +.++...
T Consensus 268 ~~~~~~-~~~~~~a~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~--~~~~~~~~~ 341 (410)
T 3e2y_A 268 NSFYTC-ATPLQAALAEAF--WIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVG-LKPIVPDGGYF--IIADVSSLG 341 (410)
T ss_dssp TTTCCC-CHHHHHHHHHHH--HHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTT-CEEEBCSBSSE--EEEECGGGC
T ss_pred hhccCC-ChHHHHHHHHHH--HhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCC-CeecCCCccEE--EEEEchhhh
Confidence 011111 112222222222 2 12355688899999999999999999987 876532 222 2222211
Q ss_pred ------------HHHHHHHHH-HcCceeeee-----------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 485 ------------AHAIASAAY-KIEMNLRVV-----------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 ------------~~~l~~~L~-~~Gi~~~~~-----------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
..++.++|. ++||.+... ..+.+|+|++. ++++++++++.|..
T Consensus 342 ~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~--~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 342 ADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIK--KDSTLDAAEEIFRA 408 (410)
T ss_dssp CCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCC--CHHHHHHHHHHHHT
T ss_pred cccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcC--CHHHHHHHHHHHHh
Confidence 236777664 679987431 13789999876 99999999999874
No 354
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.62 E-value=2.8e-14 Score=164.71 Aligned_cols=273 Identities=12% Similarity=0.095 Sum_probs=169.5
Q ss_pred HHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHH-HHHHHhhcCCCeEEEEeC-------
Q 001990 216 FQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTI-DICITRADGFDIKVVVSD------- 287 (985)
Q Consensus 216 ~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~-~~~~~~a~~~gi~v~~~~------- 287 (985)
.++.+++++|.+..++ ++.+||.++++++.++ .. +||+|++++..|++.. ........+.+++.+.++
T Consensus 83 a~~~~~~~~~~~~~~v-~~~~Gs~a~~~al~~~-~~--~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 158 (425)
T 3ecd_A 83 AIERVKRLFNAGHANV-QPHSGAQANGAVMLAL-AK--PGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTML 158 (425)
T ss_dssp HHHHHHHHHTCSEEEC-CCSSHHHHHHHHHHHH-CC--TTCEEEEECC------------------CEEEEECCCTTTSS
T ss_pred HHHHHHHHhCCCCcee-ecCchHHHHHHHHHHc-cC--CCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCc
Confidence 3477899999887433 5788888877776655 23 8899999999998833 222211123344555543
Q ss_pred --chhhhc-cC-CCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCC---CCCcc-cceEEEecC-cc
Q 001990 288 --LKDIDY-KS-GDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILK---PPGEL-GADIVVGSA-QR 358 (985)
Q Consensus 288 --~~~l~~-l~-~~t~~V~v~~pn~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~---~p~~~-GaDi~v~s~-k~ 358 (985)
++++++ +. +++++|++++|++ |...|+++|.++|+++|+++++| +.++.|... .+..+ .+|++++|. |+
T Consensus 159 ~d~~~l~~~i~~~~~~~v~~~~~~~-~~~~~l~~i~~l~~~~~~~li~D-e~~~~g~~~~~~~~~~~~~~di~~~s~sK~ 236 (425)
T 3ecd_A 159 IDYDQVEALAQQHKPSLIIAGFSAY-PRKLDFARFRAIADSVGAKLMVD-MAHIAGVIAAGRHANPVEHAHVVTSTTHKT 236 (425)
T ss_dssp CCHHHHHHHHHHHCCSEEEEECSCC-CSCCCHHHHHHHHHHHTCEEEEE-CGGGHHHHHTTSSCCGGGTCSEEEEESSGG
T ss_pred cCHHHHHHHHhhcCCcEEEEccccC-CCcCCHHHHHHHHHHcCCEEEEE-CcChHhhhhcccccCchhcCcEEEecCCcc
Confidence 245555 54 5789999987765 88899999999999999999995 333333221 11111 379999998 87
Q ss_pred ccccCCCCCCceEEEEEc-hhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHH
Q 001990 359 FGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVY 437 (985)
Q Consensus 359 lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~ 437 (985)
|+ ||..|+++++ +.+.+.+...... + ..++++ +....++.+++ ..
T Consensus 237 l~------g~~~g~~~~~~~~~~~~~~~~~~~------~-----------------~~~~~~---~~~~~a~~~a~--~~ 282 (425)
T 3ecd_A 237 LR------GPRGGFVLTNDEEIAKKINSAVFP------G-----------------LQGGPL---MHVIAGKAVAF--GE 282 (425)
T ss_dssp GC------CCSCEEEEESCHHHHHHHHHHHC----------------------------CCC---HHHHHHHHHHH--HH
T ss_pred cC------CCCcEEEEeCCHHHHHHHHhhhCc------c-----------------ccCCcc---HHHHHHHHHHH--HH
Confidence 74 3445888887 4454443110000 0 001111 12333333332 33
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCC-CCcceEEEecC--C--HHHHHHHHHHcCceeeee----------
Q 001990 438 HGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCA--D--AHAIASAAYKIEMNLRVV---------- 502 (985)
Q Consensus 438 ~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~i~~~--~--~~~l~~~L~~~Gi~~~~~---------- 502 (985)
...++++++.++..++.+++++.|.+.| +++..+ .....+.+..+ + ...+.+.|.++||.++..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~ 361 (425)
T 3ecd_A 283 ALTDDFKTYIDRVLANAQALGDVLKAGG-VDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPT 361 (425)
T ss_dssp HTSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTT
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhCC-CeeccCCCCceEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCC
Confidence 4456788999999999999999999987 888742 22333444443 2 778889999999987621
Q ss_pred cCCeEEEEecc----CCCHHHHHHHHHHHhC
Q 001990 503 DSNTVTASFDE----TTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ~~~~lris~~~----~~t~edid~ll~~l~~ 529 (985)
.++.+|+++.. ..+++|+++++++|..
T Consensus 362 ~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~ 392 (425)
T 3ecd_A 362 ITSGIRLGTPAGTTRGFGAAEFREVGRLILE 392 (425)
T ss_dssp TCSEEEEESHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CccceeccchhheeccCCHHHHHHHHHHHHH
Confidence 12579999554 4459999999999974
No 355
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.62 E-value=3.7e-14 Score=163.13 Aligned_cols=210 Identities=16% Similarity=0.108 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHH-----HHhcCcEEEEE
Q 001990 633 MFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPAT-----AAMCGMKIVSV 707 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~-----~~~~G~~v~~v 707 (985)
...++++.+++++|.+. .+.+++|++++.+ ++++ ..++++||+++..|+..... +...|++++.+
T Consensus 68 ~~~~l~~~la~l~g~~~-~~~~~sG~~Ai~~-~~~l--------~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v 137 (400)
T 3nmy_A 68 TRFAYERCVAALEGGTR-AFAFASGMAATST-VMEL--------LDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFV 137 (400)
T ss_dssp HHHHHHHHHHHHHTCSE-EEEESSHHHHHHH-HHTT--------SCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEE
T ss_pred HHHHHHHHHHHHhCCCC-EEEecCHHHHHHH-HHHH--------cCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEE
Confidence 46688999999999875 4667788776643 2211 14678999988877633332 23369999999
Q ss_pred eCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccccCCCCCCcCCCcE
Q 001990 708 GTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGYIGADV 786 (985)
Q Consensus 708 ~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~~g~~~~g~~g~Di 786 (985)
+.+ |+++++++++ +++++|++++| |++|.+. |+++|+++|+++|+++++|+++..+. +..|..+|+|+
T Consensus 138 ~~~-----d~~~l~~~i~---~~~~~v~~e~~~np~G~~~-~l~~i~~la~~~g~~livDe~~~~~~--~~~~~~~g~di 206 (400)
T 3nmy_A 138 DLT-----DPAAFKAAIR---ADTKMVWIETPTNPMLKLV-DIAAIAVIARKHGLLTVVDNTFASPM--LQRPLSLGADL 206 (400)
T ss_dssp CTT-----SHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHTTCEEEEECTTTHHH--HCCGGGGTCSE
T ss_pred CCC-----CHHHHHHHhc---cCCCEEEEECCCCCCCeee-cHHHHHHHHHHcCCEEEEECCCcccc--cCChhhcCCcE
Confidence 875 8999999997 78999999998 5799998 89999999999999999999985332 23566789999
Q ss_pred EEeCCcccccccCCCCCCcce-eeee-cccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhc
Q 001990 787 CHLNLHKTFCIPHGGGGPGMG-PIGV-KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMG 864 (985)
Q Consensus 787 ~~~s~hKtl~~p~g~GGPg~G-~l~~-~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg 864 (985)
++.|++|+|+.| |.+-+| ++++ ++++.+.+.... ..++... .+ ..+|..++.
T Consensus 207 v~~S~sK~l~g~---g~~~gG~~vv~~~~~~~~~l~~~~-------------~~~g~~~-----~~---~~a~~~l~~-- 260 (400)
T 3nmy_A 207 VVHSATKYLNGH---SDMVGGIAVVGDNAELAEQMAFLQ-------------NSIGGVQ-----GP---FDSFLALRG-- 260 (400)
T ss_dssp EEEETTTTTTCS---SSCCCEEEEECSCHHHHHHHHHHH-------------HHHCCBC-----CH---HHHHHHHHH--
T ss_pred EEecCccccCCC---CCcceeEEEEeCCHHHHHHHHHHH-------------HhcCCCC-----CH---HHHHHHHHh--
Confidence 999999998532 112345 3444 445544332100 0000111 11 123333333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcc
Q 001990 865 SKGLTEASKIAILNANYMAKRLEKH 889 (985)
Q Consensus 865 ~~gl~~~~~~~~~~a~~l~~~L~~~ 889 (985)
.+.+....++..+++.++.+.|++.
T Consensus 261 l~~l~~r~~~~~~~a~~l~~~L~~~ 285 (400)
T 3nmy_A 261 LKTLPLRMRAHCENALALAQWLETH 285 (400)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2445566677788999999999864
No 356
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.62 E-value=1.4e-13 Score=159.12 Aligned_cols=268 Identities=11% Similarity=0.088 Sum_probs=177.0
Q ss_pred HHHHHhhCC--CC-cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc------
Q 001990 218 TMIADLTGL--PM-SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL------ 288 (985)
Q Consensus 218 ~~ia~L~g~--~~-~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~------ 288 (985)
+.+.+..|. ++ .++.+++|+|.++++++.++ .. +||+|+++...|+.+...++. .|.+++.++.
T Consensus 78 ~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~-~~--~gd~vl~~~p~~~~~~~~~~~----~g~~~~~~~~~~~~~~ 150 (422)
T 3fvs_A 78 SFFGELLGQEIDPLRNVLVTVGGYGALFTAFQAL-VD--EGDEVIIIEPFFDCYEPMTMM----AGGRPVFVSLKPGPIQ 150 (422)
T ss_dssp HHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHH-CC--TTCEEEEEESCCTTHHHHHHH----TTCEEEEEECBCCCCC
T ss_pred HHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHH-cC--CCCEEEEcCCCchhhHHHHHH----cCCEEEEEeccccccc
Confidence 344444454 44 57888999998888777654 23 789999999999998877653 4777666532
Q ss_pred --------------hhhhc-cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEeccccccCCC-------
Q 001990 289 --------------KDIDY-KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK------- 342 (985)
Q Consensus 289 --------------~~l~~-l~~~t~~V~v~~p-n~~G~i~---dl~~I~~~a~~~galliV~a~~~alg~l~------- 342 (985)
+++++ +++++++|++.+| |.+|.+. ++++|+++|+++|+++++|. ..+.....
T Consensus 151 ~G~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~ 229 (422)
T 3fvs_A 151 NGELGSSSNWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDE-VYQWMVYDGHQHISI 229 (422)
T ss_dssp SSSCCBGGGSBCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC-TTTTCBCTTCCCCCG
T ss_pred ccccccccCCCCCHHHHHhhcCCCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEc-cchhhccCCCCCCCh
Confidence 34555 6788999999998 6899987 69999999999999999952 33321110
Q ss_pred --CCCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCC
Q 001990 343 --PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 343 --~p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsn 419 (985)
-+..++.+++++|. |.|+.| |..+|++++++++++.+... + ..+.+
T Consensus 230 ~~~~~~~~~~i~~~S~sK~~g~~----G~r~G~~~~~~~~~~~~~~~--------------------------~-~~~~~ 278 (422)
T 3fvs_A 230 ASLPGMWERTLTIGSAGKTFSAT----GWKVGWVLGPDHIMKHLRTV--------------------------H-QNSVF 278 (422)
T ss_dssp GGSTTTGGGEEEEEEHHHHHTCG----GGCCEEEECCHHHHHHHHHH--------------------------H-HTTTC
T ss_pred hhcccccCcEEEEecchhccCCc----cceEEEEEeCHHHHHHHHHH--------------------------H-hhccC
Confidence 11235677989887 888633 34579999988877654100 0 01111
Q ss_pred ccchhHHHHHHHHHHHHH------cCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecCC---------
Q 001990 420 ICTAQALLANMAAMYAVY------HGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--------- 484 (985)
Q Consensus 420 i~t~~~l~a~~aa~y~~~------~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~--------- 484 (985)
.++.....++.+++ .. ...+.++++.++..++.+++.+.|+++| +++..+....-+.+.++.
T Consensus 279 ~~~~~~~~a~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (422)
T 3fvs_A 279 HCPTQSQAAVAESF--EREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVG-LKPIIPQGSYFLITDISDFKRKMPDLP 355 (422)
T ss_dssp CCCHHHHHHHHHHH--HHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTT-CEEEBCSBSSEEEEECHHHHHHCCCCC
T ss_pred CCCcHHHHHHHHHH--hhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcC-CeecCCCeeeEEEEechhhcccccccc
Confidence 11112222222222 21 2356688899999999999999999987 886532111112233221
Q ss_pred -------HHHHHHHHH-HcCceeeee-----------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 485 -------AHAIASAAY-KIEMNLRVV-----------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 -------~~~l~~~L~-~~Gi~~~~~-----------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
..++.+.|. ++||.+... ..+.+|+|++. ++++++++++.|..
T Consensus 356 ~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~ 417 (422)
T 3fvs_A 356 GAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVK--DEATLQAMDEKLRK 417 (422)
T ss_dssp CCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCC--CHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 346777755 579987541 14789999886 99999999999863
No 357
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.62 E-value=1.9e-14 Score=170.48 Aligned_cols=313 Identities=13% Similarity=0.130 Sum_probs=186.8
Q ss_pred hcHHHHHHHHHHHHHHHhC-CC--ccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcE
Q 001990 628 QGYQEMFNNLGEWLCTITG-FD--SFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 628 ~G~~~~~~el~~~la~l~G-~~--~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~ 703 (985)
+|..++.+.+.+++.+..| .+ ... ++++++++++.. +++.+. ..|..++++|+++.+.|..+...++..|++
T Consensus 129 ~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~---~~~~l~-~~gd~~~d~Vlv~~p~y~~~~~~~~~~g~~ 204 (498)
T 3ihj_A 129 QGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGIST---ILKILV-SGGGKSRTGVMIPIPQYPLYSAVISELDAI 204 (498)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHH---HHHHHC-CCCGGGSEEEEEEESCCTHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHH---HHHHHc-CCCCCCCCEEEEeCCCchhHHHHHHHcCCE
Confidence 4655666677777777774 53 344 444555554432 233221 111002358999999888777778899999
Q ss_pred EEEEeCCCC--CCCCHHHHHHHHHhcCC--CeEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccccC-
Q 001990 704 IVSVGTDAK--GNINIEELRKAAEANRD--NLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVG- 775 (985)
Q Consensus 704 v~~v~~~~~--g~iDle~L~~~i~~~~~--~t~~Vvi~~p-n~~G~i~--~di~eI~~la~~~g~lliVD~a~~~~~~g- 775 (985)
++.++++++ ..+|+++|++++++... ++++|++++| |++|.+. +++++|+++|+++|+++++|+++......
T Consensus 205 ~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~ 284 (498)
T 3ihj_A 205 QVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSP 284 (498)
T ss_dssp EEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCT
T ss_pred EEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCC
Confidence 999998764 47899999999984322 5899999999 5799884 25888999999999999999998532211
Q ss_pred ---CCCCCc----CC------Cc-EEEeCCcccccccCCCCCCcceeeee---cccccCcCCCCccccCCCCCCCCCCCC
Q 001990 776 ---LTSPGY----IG------AD-VCHLNLHKTFCIPHGGGGPGMGPIGV---KKHLAPFLPSHPVVSTGGIPAPEKSQP 838 (985)
Q Consensus 776 ---~~~~g~----~g------~D-i~~~s~hKtl~~p~g~GGPg~G~l~~---~~~l~~~lpg~~~g~~~~~~~~~~~~~ 838 (985)
+..... ++ .. +++.|++|+|+ |..|.++|++++ ++++.+.+.... .
T Consensus 285 ~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~---G~~G~R~G~~~~~~~~~~l~~~l~~~~-~------------- 347 (498)
T 3ihj_A 285 DCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYM---GECGYRGGYMEVINLHPEIKGQLVKLL-S------------- 347 (498)
T ss_dssp TCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTT---CCSSSCCEEEEEESCCHHHHHHHHHHH-H-------------
T ss_pred CCCcCCHHHHHHHhcccccCceeEEEEeccccccc---cCcccceEEEEEecCCHHHHHHHHHHH-h-------------
Confidence 000000 11 12 56678899883 123678899973 555554432100 0
Q ss_pred CCCcccccchhhhHHHHHHHHHHHhch------------hhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeEEEE
Q 001990 839 LGTIAAAPWGSALILPISYTYIAMMGS------------KGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFI 906 (985)
Q Consensus 839 t~~i~s~~~g~~~~~~~A~a~l~~lg~------------~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~~~v 906 (985)
...+++..++. +.+ ..+.. +.+.+..++..++++++.+.|++...+.+..+++..+ +.
T Consensus 348 -~~~~~~~~~q~-----a~~--~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~~--~~ 417 (498)
T 3ihj_A 348 -VRLCPPVSGQA-----AMD--IVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMY--AF 417 (498)
T ss_dssp -HSCCCCHHHHH-----HHH--HHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSE--EC
T ss_pred -ccCCCCHHHHH-----HHH--HHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEEE--EE
Confidence 01111111121 111 11110 1123344566778889999998732343333333222 12
Q ss_pred EEecCcc-------ccCCCCHHHH--HHHHHHCCCccCCCC-C---CCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHH
Q 001990 907 VDLRGLK-------NTAGIEPEDV--AKRLMDYGFHGPTMS-W---PVPGTLMIEPTESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 907 v~~~~~~-------~~~g~~~~~l--~~~L~e~Gi~~~~~~-~---pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
+++. ++ ...+.+..++ .+.|.++||.+.... | +..+.+|+++. .++++++ ++++.|+++++
T Consensus 418 ~~l~-~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~--~~~e~l~---~~i~~L~~~~~ 491 (498)
T 3ihj_A 418 PRIF-IPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTIL--PPVEKLK---TVLQKVKDFHI 491 (498)
T ss_dssp CEEC-CCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECC--SCHHHHH---HHHHHHHHHHH
T ss_pred Eecc-CchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeC--CCHHHHH---HHHHHHHHHHH
Confidence 2221 00 0114455553 455667899874321 2 22468999984 7899999 99999999888
Q ss_pred HHHH
Q 001990 974 FTTF 977 (985)
Q Consensus 974 ~~~~ 977 (985)
+..+
T Consensus 492 ~~~~ 495 (498)
T 3ihj_A 492 NFLE 495 (498)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 358
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.62 E-value=3.2e-13 Score=151.96 Aligned_cols=296 Identities=14% Similarity=0.137 Sum_probs=191.2
Q ss_pred CCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhc
Q 001990 173 MGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQK 252 (985)
Q Consensus 173 ~g~~~~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~ 252 (985)
.|..+...|+.+.+++.+.-.-+..|.+. ++ .++++.+|+++|.++.++.+++|+|.+++.++.++.
T Consensus 22 ~~~~~~~~~~~v~~a~~~~~~~~~~y~~~-----~~-----~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l~--- 88 (350)
T 3fkd_A 22 TTVWTDGDKDHLEKHLVENLNCIRHYPEP-----DA-----GTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFR--- 88 (350)
T ss_dssp CCSCCCSCCHHHHHHHHHTGGGGGSCCCT-----TC-----HHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHTT---
T ss_pred CCCCCCCCCHHHHHHHHHhHhHHhcCCCC-----cH-----HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHHC---
Confidence 34334446666655655432223333221 11 257889999999988889999999988887776652
Q ss_pred CCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-hhhhcc-CCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCC-cE
Q 001990 253 GKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL-KDIDYK-SGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANG-VK 328 (985)
Q Consensus 253 ~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~-~~l~~l-~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~g-al 328 (985)
||+|+++...|+++...++. .|++++.++. ++-..+ .+++++|++.+| |++|.+.|++++.++++.++ .+
T Consensus 89 --gd~Vi~~~p~~~~~~~~~~~----~g~~~~~v~~~~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~ 162 (350)
T 3fkd_A 89 --GSRSLIAIPSFAEYEDACRM----YEHEVCFYPSNEDIGEADFSNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTT 162 (350)
T ss_dssp --TCEEEEEESCCHHHHHHHHH----TTCEEEEEETTSCGGGSCCTTCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSE
T ss_pred --CCEEEEeCCCcHHHHHHHHH----cCCeEEEEecCCccccCccCCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCE
Confidence 79999999999998877653 5889998887 433332 267999999998 68999999999999999886 66
Q ss_pred EEEEeccccccCCC------CCCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceE
Q 001990 329 VVMATDLLALTILK------PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALR 401 (985)
Q Consensus 329 liV~a~~~alg~l~------~p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~ 401 (985)
+++| +..+..... ....++.+++++|. |.++.| |..+|++++++++.+.+... .
T Consensus 163 li~D-ea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~----G~r~G~~~~~~~~~~~~~~~----------~---- 223 (350)
T 3fkd_A 163 FVLD-QSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIP----GLRIGYIVANKDFMKRVAAF----------S---- 223 (350)
T ss_dssp EEEE-CTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCG----GGCCEEEECCHHHHHHHHTT----------C----
T ss_pred EEEE-CchhhhccCcchhhHHhhcCCCEEEEecCchhccCc----chheEeEEeCHHHHHHHHHh----------C----
Confidence 6664 333221111 11245677999998 888643 23468999988877665110 0
Q ss_pred EecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEe
Q 001990 402 VAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVK 481 (985)
Q Consensus 402 l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~ 481 (985)
...+.| .....+..++ +.. +.+-.+++.+. .++.+++++.|++++++++.... ..-+.+.
T Consensus 224 ------------~~~~~~---~~~~~~~~~~--l~~-~~~~~~~~~~~-~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~ 283 (350)
T 3fkd_A 224 ------------TPWAVN---ALAIEAAKFI--LIH-PAQFTLPIRKW-QRNTVDFITALNRLDGVEVHPSG-TTFFLLR 283 (350)
T ss_dssp ------------CTTCSC---HHHHHHHHHH--HHC-TTTTCCCHHHH-HHHHHHHHHHHHHSTTEEECCCS-SSEEEEE
T ss_pred ------------CCCCCC---HHHHHHHHHH--HhC-HHHHHHHHHHH-HHHHHHHHHHHhcCCCcEECCCC-CcEEEEE
Confidence 000111 1111111111 222 11012233333 37889999999988338876321 1223355
Q ss_pred cCC--HHHHHHHHHH-cCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 482 CAD--AHAIASAAYK-IEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 482 ~~~--~~~l~~~L~~-~Gi~~~~~------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
++. +.++.++|.+ +||.++.. .++.+|+|++ +.+|+++++++|..
T Consensus 284 ~~~~~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~---~~~~~~~l~~al~~ 337 (350)
T 3fkd_A 284 LKKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ---RPAQNQLFIKALET 337 (350)
T ss_dssp ESSSCHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHH
Confidence 553 8899999998 89988643 2578999976 88999999998863
No 359
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.61 E-value=3.1e-14 Score=163.97 Aligned_cols=270 Identities=13% Similarity=0.059 Sum_probs=180.4
Q ss_pred HHHHHHHHhh----CCC--C-cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC
Q 001990 215 NFQTMIADLT----GLP--M-SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD 287 (985)
Q Consensus 215 e~q~~ia~L~----g~~--~-~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~ 287 (985)
++++.+|+++ |.+ + .++.+++|+|.++++++.++. ++||+|+++...|+.+...++. .|.+++.++
T Consensus 89 ~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~---~~gd~Vl~~~p~y~~~~~~~~~----~g~~~~~v~ 161 (404)
T 2o1b_A 89 AFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVI---NPGDYVLLPDPGYTDYLAGVLL----ADGKPVPLN 161 (404)
T ss_dssp HHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHC---CTTCEEEEEESCCSSHHHHHHH----TTCEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhc---CCCCEEEEcCCCchhHHHHHHH----CCCEEEEec
Confidence 3556666666 875 2 578888999988888777652 2789999999999998887653 477777665
Q ss_pred c---------hhhhc-cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEeccccccCC--C--CC----C
Q 001990 288 L---------KDIDY-KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTIL--K--PP----G 345 (985)
Q Consensus 288 ~---------~~l~~-l~~~t~~V~v~~p-n~~G~i~---dl~~I~~~a~~~galliV~a~~~alg~l--~--~p----~ 345 (985)
. ++|++ +++++++|++++| |.+|.+. ++++|+++|+++|+++++| +..+.... . +. +
T Consensus 162 ~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D-e~~~~~~~~g~~~~~~~~~~ 240 (404)
T 2o1b_A 162 LEPPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHD-FAYGAFGFDAKNPSILASEN 240 (404)
T ss_dssp CCTTTCCCCGGGSCHHHHHHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEE-CTTTTCBSSSCCCCGGGSTT
T ss_pred cCcccCcCCHHHHHHhhccCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEE-ccchhcccCCCCCChhhcCC
Confidence 3 33444 4567999999888 5799887 4789999999999999995 23332111 1 11 1
Q ss_pred cccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchh
Q 001990 346 ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQ 424 (985)
Q Consensus 346 ~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~ 424 (985)
..+.|++++|. |.|+.| |..+|++++++++++.+.... . ....+.|. .
T Consensus 241 ~~~~~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~l~~~~----------~--------------~~~~~~~~---~ 289 (404)
T 2o1b_A 241 GKDVAIEIYSLSKGYNMS----GFRVGFAVGNKDMIQALKKYQ----------T--------------HTNAGMFG---A 289 (404)
T ss_dssp HHHHEEEEEESTTTTTCG----GGCCEEEEECHHHHHHHHHHH----------H--------------HHCCCCCH---H
T ss_pred CCCCEEEEEecchhccCc----hhheEeEecCHHHHHHHHHHH----------h--------------hccCCCCH---H
Confidence 24678999997 877533 334689999988776651100 0 00011111 1
Q ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecCC---HHHHHHHHH-HcCceee
Q 001990 425 ALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD---AHAIASAAY-KIEMNLR 500 (985)
Q Consensus 425 ~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~---~~~l~~~L~-~~Gi~~~ 500 (985)
...++.++ +.. +.+.++++.++..++.+++.+.|+++| +++......--+.+.++. ..++.++|. ++||.+.
T Consensus 290 ~~~a~~~~--l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~~gi~v~ 365 (404)
T 2o1b_A 290 LQDAAIYA--LNH-YDDFLEEQSNVFKTRRDRFEAMLAKAD-LPFVHAKGGIYVWLETPPGYDSEQFEQFLVQEKSILVA 365 (404)
T ss_dssp HHHHHHHH--HHH-CHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEECCCBSSEEEEECCTTCCHHHHHHHHHHHHCEECE
T ss_pred HHHHHHHH--Hhc-CHHHHHHHHHHHHHHHHHHHHHHHhcC-CeecCCCcceEEEEeCCCCCCHHHHHHHHHHHCCEEEe
Confidence 22222222 222 356688888899999999999999886 776532111113345542 678888887 5799885
Q ss_pred ee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 501 VV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 501 ~~------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.. .++.+|++++. ++++++++++.|..
T Consensus 366 ~g~~f~~~~~~~iRis~~~--~~e~l~~~l~~l~~ 398 (404)
T 2o1b_A 366 PGKPFGENGNRYVRISLAL--DDQKLDEAAIRLTE 398 (404)
T ss_dssp ESGGGCGGGTTEEEEECCS--CTTHHHHHHHHHHG
T ss_pred CchhhCcCCCCeEEEEEcC--CHHHHHHHHHHHHH
Confidence 42 15789999996 78899999999874
No 360
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.61 E-value=7.1e-14 Score=162.48 Aligned_cols=271 Identities=13% Similarity=0.105 Sum_probs=176.8
Q ss_pred HHHHHHHHhhC--------CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001990 215 NFQTMIADLTG--------LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 215 e~q~~ia~L~g--------~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~ 286 (985)
++++.+|++++ .+..++.+++|+|.++++++.++. ++||+|++++..|+++...++ ...|.+++.+
T Consensus 90 ~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~---~~gd~vl~~~p~~~~~~~~~~---~~~g~~~~~~ 163 (435)
T 3piu_A 90 AFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLA---DPGEAVLIPTPYYPGFDRDLK---WRTGVEIVPI 163 (435)
T ss_dssp HHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHC---CTTCEEEEEESCCTTHHHHTT---TTTCCEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhc---CCCCeEEECCCccccHHHHHH---HhcCCEEEEe
Confidence 45677777777 567789899999998888776653 378999999999999887653 1468888776
Q ss_pred Cc----------hhhhc-cC------CCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEeccccccCCCC--
Q 001990 287 DL----------KDIDY-KS------GDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILKP-- 343 (985)
Q Consensus 287 ~~----------~~l~~-l~------~~t~~V~v~~p-n~~G~i~---dl~~I~~~a~~~galliV~a~~~alg~l~~-- 343 (985)
+. ++|++ +. .++++|++++| |.+|.+. ++++|+++|+++|+++++| +..+.+....
T Consensus 164 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D-ea~~~~~~~~~~ 242 (435)
T 3piu_A 164 HCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISD-EIYSGTAFSSPS 242 (435)
T ss_dssp ECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE-CTTGGGCCSSSC
T ss_pred eCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe-ccccccccCCCC
Confidence 43 34444 43 38999999998 6799885 4688999999999999995 3333322211
Q ss_pred C---C----c---------ccceEEEecC-ccccccCCCCCCceEEEEEc-hhhHhcCCCceeeeeecCCCCcceEEecc
Q 001990 344 P---G----E---------LGADIVVGSA-QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQ 405 (985)
Q Consensus 344 p---~----~---------~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~s~d~~g~~~~~l~l~ 405 (985)
. . + .+-++++++. |.|+.| |..+|+++++ +.+.+.+.
T Consensus 243 ~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~----G~r~G~~~~~~~~~~~~~~--------------------- 297 (435)
T 3piu_A 243 FISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLP----GFRVGAIYSNDDMVVAAAT--------------------- 297 (435)
T ss_dssp CCCHHHHHHC-------CGGGGEEEEEESSSSSCCG----GGCEEEEEESCHHHHHHHH---------------------
T ss_pred CcCHHHhccccccccccCCCCCEEEEEeeecccCCC----ceeEEEEEeCCHHHHHHHH---------------------
Confidence 1 1 1 1222888887 888632 3457898884 44544320
Q ss_pred cccccccccccCCCccchhHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecC
Q 001990 406 TREQHIRRDKATSNICTAQALLANMAAMYAVYH--GPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA 483 (985)
Q Consensus 406 tre~~~rre~atsni~t~~~l~a~~aa~y~~~~--g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~ 483 (985)
+... ...++....+.++++ +... ..+.++++.++..++.+++++.|++.| +++.......-+.+.++
T Consensus 298 -------~~~~--~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~l~ 366 (435)
T 3piu_A 298 -------KMSS--FGLVSSQTQHLLSAM-LSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSG-ISCLNGNAGLFCWVDMR 366 (435)
T ss_dssp -------HHGG--GSCCCHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CEECCCCSSSEEEEECG
T ss_pred -------HHhh--cCCCCHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccCCCeeEEEEEEcc
Confidence 0000 011111221222222 1111 123457778888899999999999987 88764321112333332
Q ss_pred C---------HHHHHHHHHHc-Cceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 484 D---------AHAIASAAYKI-EMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 484 ~---------~~~l~~~L~~~-Gi~~~~~------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
. ..++.++|.++ ||.+... .++.+|+++... |+++++++++.|..
T Consensus 367 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~-~~e~i~~~l~~l~~ 427 (435)
T 3piu_A 367 HLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANL-PERTLDLAMQRLKA 427 (435)
T ss_dssp GGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSS-CHHHHHHHHHHHHH
T ss_pred cccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCC-CHHHHHHHHHHHHH
Confidence 1 45788888876 9987542 257899999766 99999999999974
No 361
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.61 E-value=2.8e-14 Score=163.29 Aligned_cols=275 Identities=13% Similarity=0.118 Sum_probs=179.6
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhh----c---CCCCEEEEcCCCChhHHHHHHHhhcC-------
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ----K---GKKKTFIIASNCHPQTIDICITRADG------- 278 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~----~---~~g~~Vlv~~~~h~s~~~~~~~~a~~------- 278 (985)
..++++.+++++|.+ .+.+++|||.++++++.+.+.. + .++++|++....|++....+......
T Consensus 80 ~~~l~~~la~~~g~~--~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (392)
T 3ruy_A 80 LGPWYEKVAKLTNKE--MVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGF 157 (392)
T ss_dssp HHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTC
T ss_pred HHHHHHHHHHhcCCC--EEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhcccc
Confidence 456778999999944 5888899999888876543311 0 14679999888776554444332111
Q ss_pred --CCeEEEEe---Cchhhhc-cCCCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEeccc-cccCCCC---
Q 001990 279 --FDIKVVVS---DLKDIDY-KSGDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLL-ALTILKP--- 343 (985)
Q Consensus 279 --~gi~v~~~---~~~~l~~-l~~~t~~V~v~~p-n~~G~i~d----l~~I~~~a~~~galliV~a~~~-alg~l~~--- 343 (985)
....+..+ |+++|++ +++++++|++++| |++|.+.| +++|.++|+++|+++++|. .. .++....
T Consensus 158 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De-~~~~~~~~g~~~~ 236 (392)
T 3ruy_A 158 GPMLPGIIVIPYGDLEALKAAITPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADE-IQTGLGRTGKVFA 236 (392)
T ss_dssp CSCCSSEEEECTTCHHHHHHHCCTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEEC-TTTTTTTTSSSSG
T ss_pred CCCCCCCeeeCcccHHHHHHHhccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEee-chhCCCccccchh
Confidence 01123333 4567777 7889999999887 78999998 9999999999999999952 33 2332111
Q ss_pred CC--cccceEEEecCccccccCCCCC-CceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCc
Q 001990 344 PG--ELGADIVVGSAQRFGVPMGYGG-PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNI 420 (985)
Q Consensus 344 p~--~~GaDi~v~s~k~lg~P~~~GG-P~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni 420 (985)
.. ....|+++.| |.++ || ...|++++++++.+.+.....+ .| +.
T Consensus 237 ~~~~~~~~d~~~~S-K~l~-----gG~~~~G~~~~~~~~~~~~~~~~~~--------------------------~~-~~ 283 (392)
T 3ruy_A 237 CDWDNVTPDMYILG-KALG-----GGVFPISCAAANRDILGVFEPGSHG--------------------------ST-FG 283 (392)
T ss_dssp GGGGTCCCSEEEEC-GGGG-----TTTSCCEEEEECHHHHTTCCTTSSC--------------------------CS-ST
T ss_pred hhccCCCCCEEEEc-hhhh-----CChhhhEEEEECHHHHhhhccCCcC--------------------------CC-CC
Confidence 11 2346887664 7764 23 3478999999887766321100 01 10
Q ss_pred cchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCC--CEEEcCCCCcceEEEecCC-HHHHHHHHHHcCc
Q 001990 421 CTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG--TVEVQGLPFFDTVKVKCAD-AHAIASAAYKIEM 497 (985)
Q Consensus 421 ~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g--~~~~~~~~~~~~~~i~~~~-~~~l~~~L~~~Gi 497 (985)
.+.....+..+++ ..+.. +++.++..++.+++++.|++++ .+.... +...-+.+.+++ +.++.+.|.++||
T Consensus 284 ~~~~~~~a~~~~l--~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~g~~~~~~~~~~~~~l~~~l~~~gi 357 (392)
T 3ruy_A 284 GNPLACAVSIAAL--EVLEE---EKLTERSLQLGEKLVGQLKEIDNPMITEVR-GKGLFIGIELNEPARPYCEQLKAAGL 357 (392)
T ss_dssp TCHHHHHHHHHHH--HHHHH---TTHHHHHHHHHHHHHHHHTTCCCTTEEEEE-EETTEEEEEESSCSHHHHHHHHTTTE
T ss_pred CCHHHHHHHHHHH--HHHHh---hhHHHHHHHHHHHHHHHHHHhcCCCceEEE-eeeeEEEEEEcchHHHHHHHHHHCCc
Confidence 1112222222332 33211 4677888899999999999874 122221 111224444443 7889999999999
Q ss_pred eeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 498 NLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 498 ~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.++...++.+|++++..+|++|+++++++|..
T Consensus 358 ~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 389 (392)
T 3ruy_A 358 LCKETHENVIRIAPPLVISEEDLEWAFQKIKA 389 (392)
T ss_dssp ECCCBTTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 99876678999999999999999999999863
No 362
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.61 E-value=2.8e-15 Score=171.74 Aligned_cols=285 Identities=8% Similarity=0.061 Sum_probs=174.2
Q ss_pred HHHHHHHHHHh---CC---Cccc-ee--cChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEE
Q 001990 635 NNLGEWLCTIT---GF---DSFS-LQ--PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIV 705 (985)
Q Consensus 635 ~el~~~la~l~---G~---~~~~-~~--~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~ 705 (985)
.++++.+++++ +. +... ++ +++|++++..++.+++.+ .++++|+++.+.|..+...++..|.+++
T Consensus 72 ~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~------~~gd~Vl~~~p~y~~~~~~~~~~g~~~~ 145 (396)
T 2q7w_A 72 PEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKN------TSVKRVWVSNPSWPNHKSVFNSAGLEVR 145 (396)
T ss_dssp HHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHH------SCCCEEEEEESCCTHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHh------CCCCEEEEcCCCchhHHHHHHHcCCceE
Confidence 35666677665 21 1222 33 677777765554433322 3678999988877777777888999999
Q ss_pred EEeCC--CCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccccccC----C
Q 001990 706 SVGTD--AKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQVG----L 776 (985)
Q Consensus 706 ~v~~~--~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~--~di~eI~~la~~~g~lliVD~a~~~~~~g----~ 776 (985)
.+|.+ +++.+|+++|++++++++++++++++++| |++|.+. .++++|+++|+++|+++++|+++.....+ .
T Consensus 146 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~ 225 (396)
T 2q7w_A 146 EYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDA 225 (396)
T ss_dssp EEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHT
T ss_pred EEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchh
Confidence 99985 46789999999999754345788888888 4789875 25788999999999999999997421110 0
Q ss_pred CCC---CcC-CCcEEEeCCcccccccCCCCCCcceeeee---cc----cccCcCCCCccccCCCCCCCCCCCCCCCcccc
Q 001990 777 TSP---GYI-GADVCHLNLHKTFCIPHGGGGPGMGPIGV---KK----HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAA 845 (985)
Q Consensus 777 ~~~---g~~-g~Di~~~s~hKtl~~p~g~GGPg~G~l~~---~~----~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~ 845 (985)
... ... ..++++.|+||+|+. .|.++|++++ ++ ++.+.+.... + ..+.. . +
T Consensus 226 ~~~~~~~~~~~~~i~~~s~sK~~~~----~G~riG~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~-~-~ 287 (396)
T 2q7w_A 226 EGLRAFAAMHKELIVASSYSXNFGL----YNERVGACTLVAADSETVDRAFSQMKAAI-----------R-ANYSN-P-P 287 (396)
T ss_dssp HHHHHHHHHCSCEEEEEECTTTTTC----GGGCCEEEEEECSSHHHHHHHHHHHHHHH-----------H-TTTSS-C-C
T ss_pred HHHHHHHhcCCcEEEEEeccccccc----cccccceEEEEcCCHHHHHHHHHHHHHHH-----------h-hccCC-C-C
Confidence 000 111 234778899998853 3567899986 44 2332221000 0 00111 0 1
Q ss_pred cchhhhHHHHHHHHHHHh-----chhhHHHHHHHHHHHHHHHHHHHhc-c----CCeeEcCCCCceeEEEEEEecCcccc
Q 001990 846 PWGSALILPISYTYIAMM-----GSKGLTEASKIAILNANYMAKRLEK-H----YPILFRGVNGTVAHEFIVDLRGLKNT 915 (985)
Q Consensus 846 ~~g~~~~~~~A~a~l~~l-----g~~gl~~~~~~~~~~a~~l~~~L~~-~----~~i~~~g~~~~~~~~~vv~~~~~~~~ 915 (985)
.....++.+++... -.+.+.+..++..++++++.+.|++ + +.+. .+.+..+ +.++
T Consensus 288 ----~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~~~~~~--~~~~------- 352 (396)
T 2q7w_A 288 ----AHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFI--IKQNGMF--SFSG------- 352 (396)
T ss_dssp ----HHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHH--HHCCSSE--EECC-------
T ss_pred ----cHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccee--cCCCceE--EEec-------
Confidence 11112222222211 0134455556677788899999987 3 3321 1111221 1122
Q ss_pred CCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHH
Q 001990 916 AGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSL 971 (985)
Q Consensus 916 ~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i 971 (985)
.+...+.+.|.++||.+.. .+|++++.. |++|++ +++++|+++
T Consensus 353 --~~~~~~~~~l~~~gv~v~~-------~~Ris~~~~-~~e~i~---~~~~~l~~~ 395 (396)
T 2q7w_A 353 --LTKEQVLRLREEFGVYAVA-------SGRVNVAGM-TPDNMA---PLCEAIVAV 395 (396)
T ss_dssp --CCHHHHHHHHHHHCEECCT-------TCEEEGGGC-CTTTHH---HHHHHHHHH
T ss_pred --CCHHHHHHHHHhcCeeecC-------CceEEEeec-CHHHHH---HHHHHHHhc
Confidence 3455677777789998742 379999753 899999 999999865
No 363
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.61 E-value=1.7e-13 Score=160.28 Aligned_cols=301 Identities=13% Similarity=0.077 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCCCcHHHHH----------hc
Q 001990 632 EMFNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPATAA----------MC 700 (985)
Q Consensus 632 ~~~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~-~~Hg~~~~~~~----------~~ 700 (985)
+...++.+++++.++-....+++++|++++++++.++|.+. ++++||+.+ .+||....... ..
T Consensus 97 ~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 170 (453)
T 2cy8_A 97 PLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFT------GRRMILRFEGHYHGWHDFSASGYNSHFDGQPAP 170 (453)
T ss_dssp HHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHH------CCCEEEEECC-----------------------
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhh------CCCEEEEEcCCcCCCchhhHhhcCCccCCCcCC
Confidence 35667888888887522234677889988877777655442 345677655 56664432221 12
Q ss_pred CcE------EEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccC----HHHHHHHHHHcCCEEEEEccc
Q 001990 701 GMK------IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEG----IDEICKIIHDNGGQVYMDGAN 769 (985)
Q Consensus 701 G~~------v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~d----i~eI~~la~~~g~lliVD~a~ 769 (985)
|+. +..++. .|+++|+++++++++++++|+++.. +.+|.+. + +++|.++|++||+++|+|++|
T Consensus 171 g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~-~~~~~l~~l~~l~~~~g~~lI~DEv~ 244 (453)
T 2cy8_A 171 GVLPETTANTLLIRP-----DDIEGMREVFANHGSDIAAFIAEPVGSHFGVTP-VSDSFLREGAELARQYGALFILDEVI 244 (453)
T ss_dssp -----CGGGEEEECT-----TCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEE-CCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCccccCceeecCC-----CCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEecCc
Confidence 432 344443 3899999999754346777665433 3478775 5 999999999999999999998
Q ss_pred cccccCCCCCC-----cCCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCccc
Q 001990 770 MNAQVGLTSPG-----YIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAA 844 (985)
Q Consensus 770 ~~~~~g~~~~g-----~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s 844 (985)
. ++ .....+ ...+|++++ +|+|+ +|.++|++++++++++.+.....+.. ...+ +.+
T Consensus 245 ~-g~-~~g~~~~~~~~~~~~di~s~--sK~l~-----~G~~~G~v~~~~~~~~~l~~~~~~~~-------~~~~--t~~- 305 (453)
T 2cy8_A 245 S-GF-RVGNHGMQALLDVQPDLTCL--AKASA-----GGLPGGILGGREDVMGVLSRGSDRKV-------LHQG--TFT- 305 (453)
T ss_dssp T-TT-TTCTTHHHHHHTCCCSEEEE--EGGGG-----TTSSCEEEEECHHHHTTSSSCC------------------CC-
T ss_pred c-cc-ccCchhhhHHhCCCCcEEEE--Chhhh-----CCcceEEEechHHHHHHhccccCCCc-------eeCC--CCC-
Confidence 5 33 111111 123688754 58884 35679999999887766532100000 0001 111
Q ss_pred ccchhhhHHHHHHHHHHH-hchhhHHHHHHHHHHHHHHHHHHHhcc---CCee--EcCCCCceeEEEEEEecC-------
Q 001990 845 APWGSALILPISYTYIAM-MGSKGLTEASKIAILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRG------- 911 (985)
Q Consensus 845 ~~~g~~~~~~~A~a~l~~-lg~~gl~~~~~~~~~~a~~l~~~L~~~---~~i~--~~g~~~~~~~~~vv~~~~------- 911 (985)
+++..++++.+.+.. + .+++ .++..++.++++++|++. +.+. ..+ .+.+ +.+.+..
T Consensus 306 ---~n~~~~aa~~aal~~~~-~~~~---~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~---~~i~~~~~~~~~~~ 374 (453)
T 2cy8_A 306 ---GNPITAAAAIAAIDTIL-EDDV---CAKINDLGQFAREAMNHLFARKGLNWLAYG-RFSG---FHLMPGLPPNTTDT 374 (453)
T ss_dssp ---CCHHHHHHHHHHHHHHH-HTTH---HHHHHHHHHHHHHHHHHHHHHTTCCEEEEC-CTTE---EEEEETSCTTCCCC
T ss_pred ---CCHHHHHHHHHHHHHHh-hhhH---HHHHHHHHHHHHHHHHHHHhhCCCcEEEEE-eeeE---EEEEEecccccccc
Confidence 233444455566665 5 4443 345667778888888652 2221 222 1222 3344431
Q ss_pred ----cccc---CCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHHHccCCCCC
Q 001990 912 ----LKNT---AGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKFTTFAGRVGQV 984 (985)
Q Consensus 912 ----~~~~---~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~~~~~~~~~ 984 (985)
+... ......++.+.|.++||.+.. .+.++ ++..+|++|++ +++++|+++++++.+.+-+.++
T Consensus 375 ~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~~-----~~~~~--l~~~~t~~~i~---~~l~~l~~~l~~~~~~~~~~~~ 444 (453)
T 2cy8_A 375 GSITRAEVARPDVKMIAAMRMALILEGVDIGG-----RGSVF--LSAQHEREHVE---HLVTTFDRVLDRLADENLLSWQ 444 (453)
T ss_dssp HHHHTTCSCCCCHHHHHHHHHHHHHTTEECBT-----TTEEE--CCTTCCHHHHH---HHHHHHHHHHHHHHHTTCCCCC
T ss_pred ccccccccccccHHHHHHHHHHHHHCCeEEeC-----CCCEE--eeccCCHHHHH---HHHHHHHHHHHHHHhCCCcccc
Confidence 0000 001256789999999999842 13454 45789999999 9999999999988877666554
No 364
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.61 E-value=2.2e-13 Score=155.82 Aligned_cols=322 Identities=16% Similarity=0.159 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHcCCCccceecCCCCCCCCCcHHHHHHHHhCCc-cccccCCChhhHhhHHHHHHHHHHHHHHHhh----C
Q 001990 151 SQMIEHMQKLASMNKVYKSFIGMGYYNTHVPPVILRNIMENPA-WYTQYTPYQAEIAQGRLESLLNFQTMIADLT----G 225 (985)
Q Consensus 151 ~e~~~~~~~~~~~n~~~~~~lG~g~~~~~~p~~v~~~i~~~~~-~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~----g 225 (985)
.++.+..+++...++.+.+| +.|.-+...|+.+.+++.+.-. ....|.+. +| ..++++.+++++ |
T Consensus 17 ~~~~~~~~~~~~~g~~~i~l-~~g~~~~~~~~~v~~a~~~~~~~~~~~y~~~-----~g----~~~lr~~ia~~~~~~~g 86 (391)
T 3h14_A 17 MDVMEAARRAEEAGRRIIHM-EVGQPGTGAPRGAVEALAKSLETDALGYTVA-----LG----LPALRQRIARLYGEWYG 86 (391)
T ss_dssp HHHHHHHHHHHHTTCCCEEC-CCSSCSSCSCHHHHHHHHHHHC---------------C----CHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCCeEEc-cCCCCCCCCCHHHHHHHHHHHhcCCCCCCCC-----CC----hHHHHHHHHHHHHHHhC
Confidence 45566666666666655443 3344344456766545443110 01233321 11 223455566655 4
Q ss_pred --CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch-------hhhccCC
Q 001990 226 --LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK-------DIDYKSG 296 (985)
Q Consensus 226 --~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~~-------~l~~l~~ 296 (985)
.++.++.+++|+|.++++++.++. ++||+|+++...|+++...++. .|++++.++.+ +++.+..
T Consensus 87 ~~~~~~~v~~t~g~~~al~~~~~~l~---~~gd~vl~~~p~~~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~~~l~~ 159 (391)
T 3h14_A 87 VDLDPGRVVITPGSSGGFLLAFTALF---DSGDRVGIGAPGYPSYRQILRA----LGLVPVDLPTAPENRLQPVPADFAG 159 (391)
T ss_dssp CCCCGGGEEEESSHHHHHHHHHHHHC---CTTCEEEEEESCCHHHHHHHHH----TTCEEEEEECCGGGTTSCCHHHHTT
T ss_pred CCCCHHHEEEecChHHHHHHHHHHhc---CCCCEEEEcCCCCccHHHHHHH----cCCEEEEeecCcccCCCCCHHHHHh
Confidence 566789899999988888776652 3789999999999998887653 58888877653 2222222
Q ss_pred -CEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEeccccccCC----CCCCc-ccceEEEecC-ccccccCCC
Q 001990 297 -DVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL----KPPGE-LGADIVVGSA-QRFGVPMGY 365 (985)
Q Consensus 297 -~t~~V~v~~p-n~~G~i~d---l~~I~~~a~~~galliV~a~~~alg~l----~~p~~-~GaDi~v~s~-k~lg~P~~~ 365 (985)
++++|++.+| |.+|.+.+ +++|+++|+++|+++++|. ..+.... ....+ .+.+++++|. |.++.|
T Consensus 160 ~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~--- 235 (391)
T 3h14_A 160 LDLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDE-IYHGIEYEAKAVTALELTDECYVINSFSKYFSMT--- 235 (391)
T ss_dssp SCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC-TTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCT---
T ss_pred cCCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEC-cchhcccCCCCcChhhcCCCEEEEEechhccCCc---
Confidence 7899999998 67999876 8999999999999999953 3322111 11122 2566888887 877532
Q ss_pred CCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccch-hHHHHHHHHHHHHHcCcchHH
Q 001990 366 GGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTA-QALLANMAAMYAVYHGPEGLK 444 (985)
Q Consensus 366 GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~-~~l~a~~aa~y~~~~g~~Gl~ 444 (985)
|..+|++.+++++.+.+.. .++ ..+ .+++ ....+..++ +...+.++
T Consensus 236 -G~r~G~~~~~~~~~~~~~~-------------------------~~~-~~~--~~~~~~~~~a~~~~----l~~~~~~~ 282 (391)
T 3h14_A 236 -GWRVGWMVVPEDQVRVVER-------------------------IAQ-NMF--ICAPHASQVAALAA----LDCDAELQ 282 (391)
T ss_dssp -TSCCEEEECCGGGHHHHHH-------------------------HHH-HTT--CCCCHHHHHHHHHH----TTCHHHHH
T ss_pred -cceeEEEEeCHHHHHHHHH-------------------------HHh-hhc--cCCCHHHHHHHHHH----hCChHHHH
Confidence 4457999988877665410 000 001 1111 111122222 22567788
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEcCCCCc-ceEEEecC--C--HHHHHHHHHHc-Cceeeee-------cCCeEEEEe
Q 001990 445 TIAQRVHGLAGTFALGLKKLGTVEVQGLPFF-DTVKVKCA--D--AHAIASAAYKI-EMNLRVV-------DSNTVTASF 511 (985)
Q Consensus 445 ~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~-~~~~i~~~--~--~~~l~~~L~~~-Gi~~~~~-------~~~~lris~ 511 (985)
++.++..++.+++.+.|+++| +.....+.. ..+.+.++ + +.++.+.|.++ ||.+... .++.+|+++
T Consensus 283 ~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~ 361 (391)
T 3h14_A 283 ANLDVYKANRKLMLERLPKAG-FTRIAPPDGAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSY 361 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-CCCBCCCCBTTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHcC-CCcccCCCeeEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEe
Confidence 999999999999999999886 543322211 12333433 2 78899998775 9988542 246899999
Q ss_pred ccCCCHHHHHHHHHHHhC
Q 001990 512 DETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 512 ~~~~t~edid~ll~~l~~ 529 (985)
+. ++++++++++.|..
T Consensus 362 ~~--~~~~i~~~l~~l~~ 377 (391)
T 3h14_A 362 AR--ATADIEEGLDRLEA 377 (391)
T ss_dssp CS--CHHHHHHHHHHHHH
T ss_pred cC--CHHHHHHHHHHHHH
Confidence 87 78999999998874
No 365
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.61 E-value=5.4e-14 Score=165.45 Aligned_cols=293 Identities=17% Similarity=0.147 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHhCCCc-cceecChHHHHHHHHHHHHHHHHHh--cCC----------------CC--CCEEEEcC-CCC
Q 001990 633 MFNNLGEWLCTITGFDS-FSLQPNAGAAGEYAGLMVIRAYHKA--RGD----------------HH--RNVCIIPV-SAH 690 (985)
Q Consensus 633 ~~~el~~~la~l~G~~~-~~~~~~sGa~g~~a~l~air~~~~~--~g~----------------~~--~~~Vlv~~-~~H 690 (985)
+.+++++.++++++... ..++++||++++++++.+++.|... +|. .+ +++||+.+ .+|
T Consensus 111 l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yH 190 (472)
T 1ohv_A 111 FVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFH 190 (472)
T ss_dssp HHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCC
T ss_pred HHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcc
Confidence 34445555666663222 3477899999999998888766421 210 01 47788754 788
Q ss_pred CCcHHHHHhcCcE-----------EEEEeCCCC-C-------------CCCHHHHHHHHHhcCC---CeEEEEEEc-CCC
Q 001990 691 GTNPATAAMCGMK-----------IVSVGTDAK-G-------------NINIEELRKAAEANRD---NLSTLMVTY-PST 741 (985)
Q Consensus 691 g~~~~~~~~~G~~-----------v~~v~~~~~-g-------------~iDle~L~~~i~~~~~---~t~~Vvi~~-pn~ 741 (985)
|.....+...|.+ +..+++... . ..|+++|+++|+++.+ ++++|+++. +|.
T Consensus 191 g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~ 270 (472)
T 1ohv_A 191 GRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSE 270 (472)
T ss_dssp CSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCT
T ss_pred cccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCC
Confidence 8877665443321 112232110 0 2378999999984322 788888865 356
Q ss_pred ccccccC----HHHHHHHHHHcCCEEEEEcccc-ccccCC-CCCCcCC----CcEEEeCCcccccccCCCCCCcceeeee
Q 001990 742 HGVYEEG----IDEICKIIHDNGGQVYMDGANM-NAQVGL-TSPGYIG----ADVCHLNLHKTFCIPHGGGGPGMGPIGV 811 (985)
Q Consensus 742 ~G~i~~d----i~eI~~la~~~g~lliVD~a~~-~~~~g~-~~~g~~g----~Di~~~s~hKtl~~p~g~GGPg~G~l~~ 811 (985)
+|.+. + +++|+++|++||++||+|++|. .+..+. .....+| +|+++++ |+| +|| |+++
T Consensus 271 ~G~~~-~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~s--K~~-----l~G---G~~~- 338 (472)
T 1ohv_A 271 GGDNH-ASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFS--KKM-----MTG---GFFH- 338 (472)
T ss_dssp TTCBC-CCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEEC--GGG-----SSE---EEEE-
T ss_pred CCCCC-CCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEc--ccc-----ccC---CccC-
Confidence 89876 5 9999999999999999999985 122111 0111234 7888664 873 122 5555
Q ss_pred cccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc--
Q 001990 812 KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH-- 889 (985)
Q Consensus 812 ~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~-- 889 (985)
++++....+.. ..+| .+ +++..++++.+.+..+.++++ .++..+++++|+++|++.
T Consensus 339 ~~~~~~~~~~~-------------~~~T--~~----~~~~~~aaa~aal~~~~~~~~---~~~~~~~~~~l~~~L~~l~~ 396 (472)
T 1ohv_A 339 KEEFRPNAPYR-------------IFNT--WL----GDPSKNLLLAEVINIIKREDL---LSNAAHAGKVLLTGLLDLQA 396 (472)
T ss_dssp CGGGSCSSSSS-------------SCCS--SS----SCHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHH
T ss_pred chhhccccccc-------------ccCc--cC----ccHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHHHh
Confidence 65553211110 0111 11 233444445566666544443 356667788888888752
Q ss_pred -CC--ee-EcCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHH
Q 001990 890 -YP--IL-FRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFF 965 (985)
Q Consensus 890 -~~--i~-~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i 965 (985)
+. +. ..+ .+. .+.+++.. ..+..++.+.|.++|+.+.... .+.||++++..+|++||| +++
T Consensus 397 ~~~~~v~~~~~-~g~---~~~~~~~~-----~~~~~~~~~~l~~~Gv~~~~~g---~~~iRi~~~~~~t~e~i~---~~~ 461 (472)
T 1ohv_A 397 RYPQFISRVRG-RGT---FCSFDTPD-----ESIRNKLISIARNKGVMLGGCG---DKSIRFRPTLVFRDHHAH---LFL 461 (472)
T ss_dssp HCTTTCEEEEE-ETT---EEEEECSS-----HHHHHHHHHHHHHTTEECEEET---TTEEEECCCTTCCHHHHH---HHH
T ss_pred hCCCcEEeecC-Cce---EEEEEeCC-----hhHHHHHHHHHHHCCeEEecCC---CCEEEEECCCCCCHHHHH---HHH
Confidence 32 21 111 111 12344421 1235679999999999874321 378999999999999999 999
Q ss_pred HHHHHHHHH
Q 001990 966 QILLSLTKF 974 (985)
Q Consensus 966 ~aL~~i~~~ 974 (985)
++|++++++
T Consensus 462 ~~l~~~l~~ 470 (472)
T 1ohv_A 462 NIFSDILAD 470 (472)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999988764
No 366
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.61 E-value=2.4e-14 Score=164.98 Aligned_cols=273 Identities=11% Similarity=0.045 Sum_probs=174.3
Q ss_pred HHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHh-hcCCCeEEEEeC------
Q 001990 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITR-ADGFDIKVVVSD------ 287 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~-a~~~gi~v~~~~------ 287 (985)
.+++.+++++|.+.+++ ++.+||.++++++.++ .. +||+|+++...|++........ ..+.++.++.++
T Consensus 75 ~~~~~la~~~g~~~~~i-~~~sGt~a~~~~~~~~-~~--~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 150 (417)
T 3n0l_A 75 LAIERCKKLFNCKFANV-QPNSGSQANQGVYAAL-IN--PGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGR 150 (417)
T ss_dssp HHHHHHHHHHTCSEEEC-CCSSHHHHHHHHHHHH-SC--TTCEEEEECC----------------CCSEEEEECCCTTSS
T ss_pred HHHHHHHHHhCCCCcce-EeccHHHHHHHHHHHh-cC--CCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCC
Confidence 46679999999987666 4455688877776665 23 8999999999998766532211 123455555543
Q ss_pred --chhhhc-cC-CCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEeccccccCC-----CCCCcccceEEEecC-c
Q 001990 288 --LKDIDY-KS-GDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-----KPPGELGADIVVGSA-Q 357 (985)
Q Consensus 288 --~~~l~~-l~-~~t~~V~v~~pn~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l-----~~p~~~GaDi~v~s~-k 357 (985)
+++|++ ++ +++++|++.+|| +|.+.|+++|.++|+++|+++++| +.++.|.. ..+.. ++|++++|. |
T Consensus 151 ~d~~~l~~~i~~~~~~~v~~~~~~-~G~~~~l~~i~~l~~~~~~~li~D-ea~~~g~~~~~~~~~~~~-~~di~~~s~sK 227 (417)
T 3n0l_A 151 IDYEKVREIAKKEKPKLIVCGASA-YARVIDFAKFREIADEIGAYLFAD-IAHIAGLVVAGEHPSPFP-YAHVVSSTTHK 227 (417)
T ss_dssp CCHHHHHHHHHHHCCSEEEECCSS-CCSCCCHHHHHHHHHHHTCEEEEE-CTTTHHHHHTTSSCCCTT-TCSEEEEESST
T ss_pred cCHHHHHHHHHhcCCeEEEECCcc-cCccCCHHHHHHHHHHcCCEEEEE-CccchhhhhcccCCCccc-cceEEEeeCcc
Confidence 355665 55 578999988888 499999999999999999999995 23333322 11111 589999998 7
Q ss_pred cccccCCCCCCceEEEEEc-hhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHH
Q 001990 358 RFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAV 436 (985)
Q Consensus 358 ~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~ 436 (985)
.|+ ||..|+++++ +++.+.+... +..++..-..+....++.+++ .
T Consensus 228 ~l~------g~~~G~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~aa~~~a~--~ 273 (417)
T 3n0l_A 228 TLR------GPRGGIIMTNDEELAKKINSA--------------------------IFPGIQGGPLMHVIAAKAVGF--K 273 (417)
T ss_dssp TTC------SCSCEEEEESCHHHHHHHHHH--------------------------HTTTTCSSCCHHHHHHHHHHH--H
T ss_pred ccC------CCCeeEEEECCHHHHHHHhhh--------------------------hCCcccCCcHHHHHHHHHHHH--H
Confidence 674 3445899888 5666554100 000111111112333333333 3
Q ss_pred HcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCC-CCcceEEEecC--C--HHHHHHHHHHcCceeeee---------
Q 001990 437 YHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCA--D--AHAIASAAYKIEMNLRVV--------- 502 (985)
Q Consensus 437 ~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~i~~~--~--~~~l~~~L~~~Gi~~~~~--------- 502 (985)
....++++++.++..++++++.+.|++.| +++... .....+.+.+. + ..++.+.|.++||.++..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~ 352 (417)
T 3n0l_A 274 FNLSDEWKVYAKQVRTNAQVLANVLMDRK-FKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSP 352 (417)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCT
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhCC-ceeccCCCCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCccc
Confidence 44456788999999999999999999977 887642 22233444443 2 778889999999987532
Q ss_pred -cCCeEEEEeccC----CCHHHHHHHHHHHhC
Q 001990 503 -DSNTVTASFDET----TTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 -~~~~lris~~~~----~t~edid~ll~~l~~ 529 (985)
..+.+|+++... .+++|+++++++|..
T Consensus 353 ~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~ 384 (417)
T 3n0l_A 353 FITSGLRLGTPALTARGFKEKEMEIVSNYIAD 384 (417)
T ss_dssp TTCSEEEEECHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCeeEecCHHHhhCCCCHHHHHHHHHHHHH
Confidence 136699987654 468999999999874
No 367
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.60 E-value=1.2e-14 Score=167.52 Aligned_cols=274 Identities=11% Similarity=0.056 Sum_probs=172.1
Q ss_pred HHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHH-hhcCCCeEEEE-------
Q 001990 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICIT-RADGFDIKVVV------- 285 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~-~a~~~gi~v~~------- 285 (985)
..+++++++++|++..++ ++.+||.+.++++.++. ++||+|+++...|+++...... ...+.++..+.
T Consensus 79 ~~~~~~la~~~~~~~~~v-~~~sGs~a~~~a~~~~~---~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 154 (420)
T 3gbx_A 79 QLAIDRAKELFGADYANV-QPHSGSQANFAVYTALL---QPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESG 154 (420)
T ss_dssp HHHHHHHHHHHTCSEEEC-CCSSHHHHHHHHHHHHC---CTTCEEEEEEEC------------CHHHHSEEEEEEECTTC
T ss_pred HHHHHHHHHHhCCCCcee-EecCcHHHHHHHHHHhc---CCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccC
Confidence 345678999999987655 45667777777665542 3899999999999885422211 01112233332
Q ss_pred -eCchhhhc-cCC-CEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEeccccccCC-----CCCCcccceEEEecC-
Q 001990 286 -SDLKDIDY-KSG-DVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTIL-----KPPGELGADIVVGSA- 356 (985)
Q Consensus 286 -~~~~~l~~-l~~-~t~~V~v~~pn~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l-----~~p~~~GaDi~v~s~- 356 (985)
+|++++++ +++ ++++|++++||+ |.+.|+++|.++|+++|+++++| +.++.|.. ..+.. ++|++++|.
T Consensus 155 ~~d~~~l~~~i~~~~~~~v~~~~~~~-~~~~~l~~l~~l~~~~~~~li~D-e~~~~~~~~~~~~~~~~~-~~di~~~s~s 231 (420)
T 3gbx_A 155 KIDYDEMAKLAKEHKPKMIIGGFSAY-SGVVDWAKMREIADSIGAYLFVD-MAHVAGLIAAGVYPNPVP-HAHVVTTTTH 231 (420)
T ss_dssp SCCHHHHHHHHHHHCCSEEEECCTTC-CSCCCHHHHHHHHHHTTCEEEEE-CTTTHHHHHTTSSCCSTT-TSSEEEEESS
T ss_pred CcCHHHHHHHHHhcCCeEEEEecCcc-CCccCHHHHHHHHHHcCCEEEEE-CCcchhceecccCCcccc-cCCEEEeecc
Confidence 34566766 544 589998888875 56889999999999999999995 33333322 11222 489999998
Q ss_pred ccccccCCCCCCceEEEEEch---hhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHH
Q 001990 357 QRFGVPMGYGGPHAAFLATSQ---EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 357 k~lg~P~~~GGP~~G~l~~~~---~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~ 433 (985)
|.|++ |..|++++++ ++.+.+...... . ..++++ .....++.+++
T Consensus 232 K~~~g------~~gg~~~~~~~~~~~~~~~~~~~~~------------~-----------~~~~~~---~~~~~a~~~a~ 279 (420)
T 3gbx_A 232 KTLAG------PRGGLILAKGGDEELYKKLNSAVFP------------S-----------AQGGPL---MHVIAGKAVAL 279 (420)
T ss_dssp GGGCS------CSCEEEEESSCCHHHHHHHHHHHC---------------------------CCCC---HHHHHHHHHHH
T ss_pred cCCCC------CCceEEEEcCCcHHHHHHhhhhcCC------------C-----------CCCCcc---hhHHHHHHHHH
Confidence 87753 3348888886 555543110000 0 001111 12232333232
Q ss_pred HHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCC-CCcceEEEecC--C--HHHHHHHHHHcCceeee-------
Q 001990 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-PFFDTVKVKCA--D--AHAIASAAYKIEMNLRV------- 501 (985)
Q Consensus 434 y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~~~~~~~i~~~--~--~~~l~~~L~~~Gi~~~~------- 501 (985)
.....++++++.++..++++++++.|++.| +++... .....+.+..+ + ...+.+.|.++||.+..
T Consensus 280 --~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~ 356 (420)
T 3gbx_A 280 --KEAMEPEFKVYQQQVAKNAKAMVEVFLNRG-YKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDP 356 (420)
T ss_dssp --HHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCS
T ss_pred --HHHHhHhHHHHHHHHHHHHHHHHHHHHhcC-CeeccCCCCCeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCc
Confidence 344456788999999999999999999887 888642 22233444432 2 77888899889998765
Q ss_pred ---ecCCeEEEEeccC----CCHHHHHHHHHHHhC
Q 001990 502 ---VDSNTVTASFDET----TTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ---~~~~~lris~~~~----~t~edid~ll~~l~~ 529 (985)
..+..+|+++... .+++++++++++|..
T Consensus 357 ~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~ 391 (420)
T 3gbx_A 357 KSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCD 391 (420)
T ss_dssp SCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cccCCCcceEEecchhcccCCCHHHHHHHHHHHHH
Confidence 1135699998765 458999999999874
No 368
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.60 E-value=4.8e-14 Score=163.02 Aligned_cols=290 Identities=13% Similarity=0.069 Sum_probs=186.7
Q ss_pred HHHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-
Q 001990 210 LESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL- 288 (985)
Q Consensus 210 l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~- 288 (985)
.+...++++.+++++|.+ ...++.+||.+++.++.+++.. +||+|+++...|+++...++. .|.+++.++.
T Consensus 41 ~~l~~~l~~~la~~~g~~--~~i~~~~gt~al~~~~~~~~~~--~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~~~~~ 112 (418)
T 2c81_A 41 ESMERKFAKAFADFNGVP--YCVPTTSGSTALMLALEALGIG--EGDEVIVPSLTWIATATAVLN----VNALPVFVDVE 112 (418)
T ss_dssp CCHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTCC--TTCEEEEESSSCTHHHHHHHH----TTCEEEEECBC
T ss_pred HHHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCCC--CcCEEEECCCccHhHHHHHHH----cCCEEEEEecC
Confidence 344567888999999987 3667888888887777665333 789999999999999988753 5788887754
Q ss_pred --------hhhhc-cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEeccccccC-CC--CCCcccceEEEec-
Q 001990 289 --------KDIDY-KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTI-LK--PPGELGADIVVGS- 355 (985)
Q Consensus 289 --------~~l~~-l~~~t~~V~v~~pn~~G~i~dl~~I~~~a~~~galliV~a~~~alg~-l~--~p~~~GaDi~v~s- 355 (985)
+++++ +++++++|++++ ++|.+.|+++|.++|+++|+++++| +..+.+. .. ..+.++ |+++.|
T Consensus 113 ~~~~~~d~~~l~~~i~~~~~~v~~~~--~~G~~~~~~~i~~~~~~~~~~li~D-~a~~~~~~~~~~~~~~~~-~~~~~s~ 188 (418)
T 2c81_A 113 ADTYCIDPQLIKSAITDKTKAIIPVH--LFGSMANMDEINEIAQEHNLFVIED-CAQSHGSVWNNQRAGTIG-DIGAFSC 188 (418)
T ss_dssp TTTCSBCHHHHGGGCCTTEEEECCBC--CTTCCCCHHHHHHHHHHTTCEEEEE-CTTCTTCEETTEETTSSS-SEEEEEC
T ss_pred CCCCCcCHHHHHHhhCCCCeEEEEeC--CcCCcccHHHHHHHHHHCCCEEEEE-CcccccCccCCEeccccc-ceEEEec
Confidence 34555 778899998765 5799999999999999999999995 3444443 21 123333 555554
Q ss_pred -C-ccccccCCCCCCceEEEEEc-hhhHhcCCCce-eeeeecCCCCcceEEeccccccccccc--ccCCCccc-hhHHHH
Q 001990 356 -A-QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRI-VGVSIDSSGKPALRVAMQTREQHIRRD--KATSNICT-AQALLA 428 (985)
Q Consensus 356 -~-k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~-vG~s~d~~g~~~~~l~l~tre~~~rre--~atsni~t-~~~l~a 428 (985)
+ |.++. | ..|++.++ +++.+++.... .|.... +.+ .....+.+ .+|.++.. +..+..
T Consensus 189 s~~K~~~~-----g-~~g~~~~~~~~l~~~~~~~~~~~~~~~--~~~--------~~~~~~~~~~~~~~~~~g~~~~~~~ 252 (418)
T 2c81_A 189 QQGKVLTA-----G-EGGIIVTKNPRLFELIQQLRADSRVYC--DDS--------SELMHGDMQLVKKGDIQGSNYCLSE 252 (418)
T ss_dssp CTTSSSCS-----S-SCEEEEESCHHHHHHHHHHHBTTEEEC--SCG--------GGCCTTCBSEEECCSSCCCBCCCCH
T ss_pred cCCcccCC-----C-CeEEEEECCHHHHHHHHHHHHhCcccc--ccc--------cccccchhhccccccccCcCCCcCH
Confidence 3 76642 2 35788884 66655542111 111000 000 00000001 11111110 000111
Q ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCC------CcceEEEecC-----C--HHHHHHHHHHc
Q 001990 429 NMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP------FFDTVKVKCA-----D--AHAIASAAYKI 495 (985)
Q Consensus 429 ~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~------~~~~~~i~~~-----~--~~~l~~~L~~~ 495 (985)
+.+++... ..++++++.++..++++++.+.|+++.++++...+ .+..+.+.++ + ..++.+.|.++
T Consensus 253 ~~aa~~~~--~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 330 (418)
T 2c81_A 253 FQSAILLD--QLQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILREK 330 (418)
T ss_dssp HHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEEEEccccccccCHHHHHHHHHHc
Confidence 22333212 23467888899999999999999988339887322 1234445554 3 78899999998
Q ss_pred -Cce---eeeec----------------------------------------CCeEEEEeccCC-CHHHHHHHHHHHhC
Q 001990 496 -EMN---LRVVD----------------------------------------SNTVTASFDETT-TLEDVDKLFIVFAG 529 (985)
Q Consensus 496 -Gi~---~~~~~----------------------------------------~~~lris~~~~~-t~edid~ll~~l~~ 529 (985)
||. ++... .+.+|++++.++ |++|+++++++|..
T Consensus 331 ~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~ 409 (418)
T 2c81_A 331 LNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAE 409 (418)
T ss_dssp HTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHH
T ss_pred CCCCcccccccccccccCchhcccccccccccccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHH
Confidence 998 64310 147999999999 99999999999974
No 369
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.60 E-value=7.2e-14 Score=161.76 Aligned_cols=313 Identities=13% Similarity=0.082 Sum_probs=199.3
Q ss_pred ccceecCCCCCCCCCcHHHHHHHHhCCc-cccccCCChhhHhhHHHHHHHHHHHHHHHhhC--CCCcceeeccchHHHHH
Q 001990 166 VYKSFIGMGYYNTHVPPVILRNIMENPA-WYTQYTPYQAEIAQGRLESLLNFQTMIADLTG--LPMSNASLLDEGTAAAE 242 (985)
Q Consensus 166 ~~~~~lG~g~~~~~~p~~v~~~i~~~~~-~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g--~~~~~~sl~~~~ta~~e 242 (985)
.+.+| +.|.-+...|+.+.+++.+.-+ ....|+++.. +...++.+++++.+| .++.++.+.+|++.+++
T Consensus 62 ~~i~~-~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~-------~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~ 133 (421)
T 3l8a_A 62 ELLQM-WVADMDFLPVPEIKEAIINYGREHIFGYNYFND-------DLYQAVIDWERKEHDYAVVKEDILFIDGVVPAIS 133 (421)
T ss_dssp TCEEC-CSSCCCSCCCHHHHHHHHHHHHHCCSSCBCCCH-------HHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHH
T ss_pred Ceeec-ccCCCCCCCCHHHHHHHHHHHhcCCcCCCCCCH-------HHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHH
Confidence 34443 3343334456666545443211 1234554432 223445577888888 56677888899998888
Q ss_pred HHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC-----------chhhhc-cC-CCEeEEEEEcC-CC
Q 001990 243 AMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD-----------LKDIDY-KS-GDVCGVLVQYP-GT 308 (985)
Q Consensus 243 a~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~-----------~~~l~~-l~-~~t~~V~v~~p-n~ 308 (985)
+++.++. ++||+|+++...|+.+...++. .|.+++.++ +++|++ ++ +++++|++.+| |.
T Consensus 134 ~a~~~~~---~~gd~Vi~~~~~y~~~~~~~~~----~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~np 206 (421)
T 3l8a_A 134 IALQAFS---EKGDAVLINSPVYYPFARTIRL----NDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNP 206 (421)
T ss_dssp HHHHHHS---CTEEEEEEEESCCHHHHHHHHH----TTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTT
T ss_pred HHHHHhc---CCCCEEEECCCCcHHHHHHHHH----CCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCC
Confidence 8776652 2789999999999998887754 477766654 345665 65 78999999998 78
Q ss_pred Ceee---ccHHHHHHHHHhCCcEEEEEeccccccCC-----C-----CCCcccceEEEecC-ccccccCCCCCCceEEEE
Q 001990 309 EGEV---LDYGDFIKNAHANGVKVVMATDLLALTIL-----K-----PPGELGADIVVGSA-QRFGVPMGYGGPHAAFLA 374 (985)
Q Consensus 309 ~G~i---~dl~~I~~~a~~~galliV~a~~~alg~l-----~-----~p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~ 374 (985)
+|.+ +++++|+++|+++|+++++|. ..+.... . .+...+.++++.+. |.|+.| |-.+|++.
T Consensus 207 tG~~~~~~~l~~l~~l~~~~~~~li~De-~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~----G~~~G~~~ 281 (421)
T 3l8a_A 207 GGRVWDNDDLIKIAELCKKHGVILVSDE-IHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIA----GTKNSFAI 281 (421)
T ss_dssp TTBCCCHHHHHHHHHHHHHHTCEEEEEC-TTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCG----GGCCEEEE
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEEc-cccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCc----hhheEeEE
Confidence 9988 789999999999999999952 2221110 0 11224667888887 888633 33468888
Q ss_pred Ec-hhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Q 001990 375 TS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGL 453 (985)
Q Consensus 375 ~~-~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~ 453 (985)
++ +++.+.+.... ++ ....+.|. .+..+..+++ . .+.+.++++.++..++
T Consensus 282 ~~~~~l~~~~~~~~---------------------~~--~~~~~~n~---~~~~a~~aal--~-~~~~~~~~~~~~~~~~ 332 (421)
T 3l8a_A 282 IQNESLRRKFQYRQ---------------------LA--NNQHEVPT---VGMIATQAAF--Q-YGKPWLEELKTVIEGN 332 (421)
T ss_dssp CCSHHHHHHHHHHH---------------------HH--TTCSCCCH---HHHHHHHHHH--H-HCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH---------------------Hh--cccCCCCH---HHHHHHHHHH--h-ccHHHHHHHHHHHHHH
Confidence 87 67766541100 00 00011221 2222222222 2 3556688899999999
Q ss_pred HHHHHHHHhcCCCEEEcCCCCcceEEEecC----CHHHHHHHHHH-cCceeeee------cCCeEEEEeccCCCHHHHHH
Q 001990 454 AGTFALGLKKLGTVEVQGLPFFDTVKVKCA----DAHAIASAAYK-IEMNLRVV------DSNTVTASFDETTTLEDVDK 522 (985)
Q Consensus 454 a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~----~~~~l~~~L~~-~Gi~~~~~------~~~~lris~~~~~t~edid~ 522 (985)
.+++++.|+++.++++......-.+.+.++ ...++.+.|.+ +||.+... .++.+|+++. +++++|++
T Consensus 333 ~~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~i~~ 410 (421)
T 3l8a_A 333 IKLVIKELEAKTKIKVMEPEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVA--TPKNTVQE 410 (421)
T ss_dssp HHHHHHHHHHHCSCEEECCSBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECC--SCHHHHHH
T ss_pred HHHHHHHHHhCCCceEeCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEec--CCHHHHHH
Confidence 999999998863377764311111223332 26788899975 59987541 2588999988 68999999
Q ss_pred HHHHHhC
Q 001990 523 LFIVFAG 529 (985)
Q Consensus 523 ll~~l~~ 529 (985)
+++.|..
T Consensus 411 ~l~~l~~ 417 (421)
T 3l8a_A 411 ALSRIIS 417 (421)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999863
No 370
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.60 E-value=2.4e-14 Score=167.36 Aligned_cols=291 Identities=12% Similarity=0.040 Sum_probs=173.8
Q ss_pred HHHHHHHHHHh-CCC-----ccc-ee--cChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHH----hcC
Q 001990 635 NNLGEWLCTIT-GFD-----SFS-LQ--PNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAA----MCG 701 (985)
Q Consensus 635 ~el~~~la~l~-G~~-----~~~-~~--~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~----~~G 701 (985)
.++++.+++++ |.+ ... ++ +++|++++..+.. +.... .++++|+++++.|..+...++ ..|
T Consensus 97 ~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~-~~~~~-----~~gd~Vlv~~p~~~~~~~~~~~~~~~~G 170 (448)
T 3meb_A 97 PLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFE-FLHLW-----MPKAEFYMPSTTWPNHYGIYDKVFNKLK 170 (448)
T ss_dssp HHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHH-HHHHH-----CTTCCEEEESSCCTHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHH-HHHHh-----CCCCEEEECCCCCHhHHHHHHhhHHhCC
Confidence 45667777765 776 233 34 6666666532211 22111 367889999998888877788 899
Q ss_pred cEEEEEeC-CCC--CCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccc--cCHHHHHHHHHHcCCEEEEEccccc-ccc
Q 001990 702 MKIVSVGT-DAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDEICKIIHDNGGQVYMDGANMN-AQV 774 (985)
Q Consensus 702 ~~v~~v~~-~~~--g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~--~di~eI~~la~~~g~lliVD~a~~~-~~~ 774 (985)
++++.+|+ +++ +.+|+++|+++++++.++++++++++| |++|.+. .++++|+++|+++|+++++|+++.. +.+
T Consensus 171 ~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~ 250 (448)
T 3meb_A 171 VPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATG 250 (448)
T ss_dssp SCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSS
T ss_pred CeEEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCC
Confidence 99999998 664 789999999999865456788888888 5789885 2477799999999999999998641 111
Q ss_pred CCC-C-C-----CcCCCc-EEEeCCcccccccCCCCCCcceee--ee--------c-c----cccCcCCCCccccCCCCC
Q 001990 775 GLT-S-P-----GYIGAD-VCHLNLHKTFCIPHGGGGPGMGPI--GV--------K-K----HLAPFLPSHPVVSTGGIP 831 (985)
Q Consensus 775 g~~-~-~-----g~~g~D-i~~~s~hKtl~~p~g~GGPg~G~l--~~--------~-~----~l~~~lpg~~~g~~~~~~ 831 (985)
+.. . . ...+.+ +++.|+||.|+. .|.++|++ ++ . + .+...+....
T Consensus 251 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~----~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~-------- 318 (448)
T 3meb_A 251 SFEADAFAVRMFVDAGVEVLVAQSFSKNFGL----YGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQI-------- 318 (448)
T ss_dssp CHHHHTHHHHHHHHTTCCEEEEEECTTTSCC----GGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHH--------
T ss_pred CcccCchhHHHHhhcCCcEEEEecccccCCC----ccccceeeeeeeccccccccCCHHHHHHHHHHHHHHH--------
Confidence 100 0 0 012334 668889998854 36778997 55 3 3 3333221000
Q ss_pred CCCCCCCCCCcccccchhhhHHHHHHHHHHHhc-----hhhHHHHHHHHHHHHHHHHHHHhcc-CC-------eeEcCCC
Q 001990 832 APEKSQPLGTIAAAPWGSALILPISYTYIAMMG-----SKGLTEASKIAILNANYMAKRLEKH-YP-------ILFRGVN 898 (985)
Q Consensus 832 ~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg-----~~gl~~~~~~~~~~a~~l~~~L~~~-~~-------i~~~g~~ 898 (985)
...+++.+. ....++.+.+.... .+.+.+..++..+++++|.+.|++. +. +....++
T Consensus 319 ----~~~~~~~~~------~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~ 388 (448)
T 3meb_A 319 ----RKTWSMSAI------HGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTA 388 (448)
T ss_dssp ----HTTTSSCCH------HHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHC
T ss_pred ----hcccCCccH------HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCC
Confidence 011122111 11111112221100 1234556667778888999999762 21 1111111
Q ss_pred CceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 899 GTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 899 ~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
+.. +++ . +.+.+.+...|.++||.+.. +..||++.. .++++|+ +++++|++++++
T Consensus 389 ~g~---~~~--~------~~~~~~~~~ll~~~gV~v~~------G~gRis~a~-~~~~~i~---~~~~~l~~~l~~ 443 (448)
T 3meb_A 389 IGM---FTF--T------GLTPEHVDYLKEKWSIYLVK------AGGRMSMCG-LTESNCD---YVAEAIHDAVTK 443 (448)
T ss_dssp CSS---EEE--C------CCCHHHHHHHHHHHCEEECS------GGGEEEGGG-CCTTTHH---HHHHHHHHHHHH
T ss_pred ceE---EEe--c------CCCHHHHHHHHHhCCEEEeC------CCcEEEEec-CCHHHHH---HHHHHHHHHHHh
Confidence 111 111 1 34444444444677998752 224898854 3667799 999999998763
No 371
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.60 E-value=1.2e-13 Score=158.22 Aligned_cols=271 Identities=12% Similarity=0.108 Sum_probs=175.2
Q ss_pred HHHHHHHhhC--CCCcceeeccchHHHHHHHHHHhhhhcCCC-CEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----
Q 001990 216 FQTMIADLTG--LPMSNASLLDEGTAAAEAMAMCNNIQKGKK-KTFIIASNCHPQTIDICITRADGFDIKVVVSDL---- 288 (985)
Q Consensus 216 ~q~~ia~L~g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g-~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~---- 288 (985)
+.+.+.+..| .++.++.+++|+|.+++.++.++. ++| |+|+++...|+.+...++. .|.+++.++.
T Consensus 85 la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~---~~g~d~vl~~~p~~~~~~~~~~~----~g~~~~~v~~~~~~ 157 (398)
T 3ele_A 85 IAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALT---SDAYDEFITIAPYFPEYKVFVNA----AGARLVEVPADTEH 157 (398)
T ss_dssp HHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC---CSTTCEEEEESSCCTHHHHHHHH----TTCEEEEECCCTTT
T ss_pred HHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHc---CCCCCEEEEeCCCchhhHHHHHH----cCCEEEEEecCCcC
Confidence 3344555556 466789899999988888776652 278 9999999999998887653 5888888754
Q ss_pred -----hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHh------CCcEEEEEeccccccC-----CCC-CCc
Q 001990 289 -----KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHA------NGVKVVMATDLLALTI-----LKP-PGE 346 (985)
Q Consensus 289 -----~~l~~-l~~~t~~V~v~~p-n~~G~i~d---l~~I~~~a~~------~galliV~a~~~alg~-----l~~-p~~ 346 (985)
+++++ +++++++|++++| |++|.+.+ +++|+++|++ +|+++++| +..+... ... ...
T Consensus 158 ~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~D-e~~~~~~~~~~~~~~~~~~ 236 (398)
T 3ele_A 158 FQIDFDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIAD-EPYREIVYDGIKVPFVTKY 236 (398)
T ss_dssp SSCCHHHHHHTCCTTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEE-CTTTTCBCTTCCCCCGGGT
T ss_pred CcCCHHHHHHHhCcCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEe-ccccccccCCCCcCChHhh
Confidence 34555 7788999999888 68999887 7778899999 99999995 2333211 111 134
Q ss_pred ccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhH
Q 001990 347 LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQA 425 (985)
Q Consensus 347 ~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~ 425 (985)
++.+++++|. |.|+.| |..+|++++++++.+... +.. .-+...+..++.+ . ..
T Consensus 237 ~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~~--~~~-----------------~~~~~~~~~~~~~--~-~~ 290 (398)
T 3ele_A 237 YDNTLVCYSYSKSLSLP----GERIGYVLVPDEVYDKAE--LYA-----------------AVCGAGRALGYVC--A-PS 290 (398)
T ss_dssp CSSEEEEEESTTTSSCT----TTCCEEEECCTTSTTHHH--HHH-----------------HHHHHHHHTTCCC--S-CH
T ss_pred cCCeEEEEehhhcCCCc----cceeEEEEEcchhhhHHH--HHH-----------------HHHHHhhhccccC--C-CH
Confidence 5778999887 887533 445799988776432110 000 0000001111111 1 11
Q ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecCC--HHHHHHHHHHcCceeeee-
Q 001990 426 LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKIEMNLRVV- 502 (985)
Q Consensus 426 l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~--~~~l~~~L~~~Gi~~~~~- 502 (985)
+ +..++. ..+.... ..++..++.+++.+.|+++| +++......--+.+..++ +.++.+.|.++||.+...
T Consensus 291 ~-~~~a~~--~~l~~~~---~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~ 363 (398)
T 3ele_A 291 L-FQKMIV--KCQGATG---DINAYKENRDLLYEGLTRIG-YHCFKPDGAFYMFVKALEDDSNAFCEKAKEEDVLIVAAD 363 (398)
T ss_dssp H-HHHHHT--TCTTCCC---CHHHHHHHHHHHHHHHHHHT-CCEECCSBSSEEEEECSSSCHHHHHHHHHTTTEECEESG
T ss_pred H-HHHHHH--HHhcCHH---HHHHHHHHHHHHHHHHHHcC-CeecCCCeeEEEEEEcCCCCHHHHHHHHHHCCEEEeCcc
Confidence 1 111211 1222111 34566778889999998876 776532211123445553 888999999999988653
Q ss_pred ---cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 503 ---DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ---~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.++.+|++++ +++++++++++.|..
T Consensus 364 ~~~~~~~iRis~~--~~~e~i~~~l~~l~~ 391 (398)
T 3ele_A 364 GFGCPGWVRISYC--VDREMIKHSMPAFEK 391 (398)
T ss_dssp GGTCTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 1589999996 699999999999974
No 372
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.60 E-value=5.4e-14 Score=163.07 Aligned_cols=268 Identities=15% Similarity=0.159 Sum_probs=177.5
Q ss_pred HHHHHHHHhhC--------CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001990 215 NFQTMIADLTG--------LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 215 e~q~~ia~L~g--------~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~ 286 (985)
++++.+|+++| .++.++.+++|+|.++++++.++. ++||+|++++..|+++...+ +...|++++.+
T Consensus 87 ~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~---~~gd~Vl~~~p~y~~~~~~~---~~~~g~~~~~v 160 (428)
T 1iay_A 87 EFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLA---DPGDAFLVPSPYYPAFNRDL---RWRTGVQLIPI 160 (428)
T ss_dssp HHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHC---CTTCEEEEESSCCTTHHHHT---TTTTCCEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhC---CCCCeEEEccCCCcchHHHH---HHhcCCEEEEe
Confidence 45667777776 667788888999988888776653 27899999999999877644 33568888887
Q ss_pred Cc----------hhhhc-cC------CCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEeccccccCCC---
Q 001990 287 DL----------KDIDY-KS------GDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILK--- 342 (985)
Q Consensus 287 ~~----------~~l~~-l~------~~t~~V~v~~p-n~~G~i~d---l~~I~~~a~~~galliV~a~~~alg~l~--- 342 (985)
+. +++++ ++ +++++|++.+| |++|.+.| +++|+++||++|+++++| +..+.....
T Consensus 161 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D-ea~~~~~~~~~~ 239 (428)
T 1iay_A 161 HCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCD-EIYAATVFDTPQ 239 (428)
T ss_dssp CCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEE-CTTGGGCCSSSC
T ss_pred ecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEe-ccccccccCCCC
Confidence 54 23443 32 37999999998 56999998 999999999999999995 333321111
Q ss_pred C-C-Cc---------ccce--EEEecC-ccccccCCCCCCceEEEEE-chhhHhcCCCceeeeeecCCCCcceEEecccc
Q 001990 343 P-P-GE---------LGAD--IVVGSA-QRFGVPMGYGGPHAAFLAT-SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTR 407 (985)
Q Consensus 343 ~-p-~~---------~GaD--i~v~s~-k~lg~P~~~GGP~~G~l~~-~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tr 407 (985)
. + .. ++.| +++.|. |.|+.| |--+|++++ ++++++.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~----Glr~G~~~~~~~~~~~~~~----------------------- 292 (428)
T 1iay_A 240 FVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLP----GFRVGIIYSFNDDVVNCAR----------------------- 292 (428)
T ss_dssp CCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCG----GGCEEEEEESCHHHHHHHH-----------------------
T ss_pred ccCHHHhccccccccCCCCcEEEEecchhhcCCC----CceEEEEEeCCHHHHHHHH-----------------------
Confidence 0 1 11 2378 788887 877532 223589988 566665431
Q ss_pred cccccccccCCCccchhHHHHHHHHHHHHHcC-----cchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEec
Q 001990 408 EQHIRRDKATSNICTAQALLANMAAMYAVYHG-----PEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKC 482 (985)
Q Consensus 408 e~~~rre~atsni~t~~~l~a~~aa~y~~~~g-----~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~ 482 (985)
+...+.+ .+.... .++. ..+. .+.++++.++..++.+++.+.|+++| +++.......-+.+.+
T Consensus 293 -----~~~~~~~--~~~~~~--~a~~--~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~g~~~~~~~ 360 (428)
T 1iay_A 293 -----KMSSFGL--VSTQTQ--YFLA--AMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVG-IKCLKNNAGLFCWMDL 360 (428)
T ss_dssp -----HHHTTSC--CCHHHH--HHHH--HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCBCCCSSSSEEEEEC
T ss_pred -----HHHhccc--CCHHHH--HHHH--HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccCCCeeEEEEEec
Confidence 0000011 111111 1111 1221 12467788888999999999999886 7765321111233444
Q ss_pred C--------C-HHHHHHHHHHc-Cceeeeec------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 483 A--------D-AHAIASAAYKI-EMNLRVVD------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 ~--------~-~~~l~~~L~~~-Gi~~~~~~------~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+ . ..++.++|.++ ||.+.... ++.+|++++ .++++++++++++|..
T Consensus 361 ~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~e~i~~~~~~l~~ 422 (428)
T 1iay_A 361 RPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRR 422 (428)
T ss_dssp GGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHH
T ss_pred hhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEe-cCCHHHHHHHHHHHHH
Confidence 3 1 45788999876 99886531 468999998 6899999999999873
No 373
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.60 E-value=2.5e-14 Score=162.53 Aligned_cols=270 Identities=11% Similarity=0.090 Sum_probs=176.7
Q ss_pred HHHHHHHhhC------CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC--
Q 001990 216 FQTMIADLTG------LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD-- 287 (985)
Q Consensus 216 ~q~~ia~L~g------~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~-- 287 (985)
+++.+|++++ .++.++.+++|+|.++++++.++. ++||+|+++...|+++...++. .|.+++.++
T Consensus 63 lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~---~~gd~vl~~~~~~~~~~~~~~~----~g~~~~~~~~~ 135 (377)
T 3fdb_A 63 LSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFT---PAQSKVIVPTPAYPPFFHLLSA----TQREGIFIDAT 135 (377)
T ss_dssp HHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS---CTTCCEEEEESCCTHHHHHHHH----HTCCEEEEECT
T ss_pred HHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhc---CCCCEEEEcCCCcHhHHHHHHH----cCCEEEEccCC
Confidence 4456666665 667789899999998888776652 2789999999999998887754 366666654
Q ss_pred ----chhhhc-cCCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEeccccccCCC---CC---C---cccc
Q 001990 288 ----LKDIDY-KSGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK---PP---G---ELGA 349 (985)
Q Consensus 288 ----~~~l~~-l~~~t~~V~v~~p-n~~G~i~---dl~~I~~~a~~~galliV~a~~~alg~l~---~p---~---~~Ga 349 (985)
++++++ +++++++|++.+| |.+|.+. ++++|+++|+++|+++++| +..+..... .+ . ..+.
T Consensus 136 ~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D-e~~~~~~~~g~~~~~~~~~~~~~~~ 214 (377)
T 3fdb_A 136 GGINLHDVEKGFQAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVD-EIHAPLVFDGQHTVAAGVSDTAASV 214 (377)
T ss_dssp TSCCHHHHHHHHHTTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEE-CTTGGGBSSSCCCCGGGSCHHHHHH
T ss_pred CCCCHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEE-cccchhhcCCCCCcccHHHccCCCc
Confidence 456666 6677899999998 7899886 5778888899999999995 233321111 11 1 2455
Q ss_pred eEEEecC-ccccccCCCCCCceEEEEE-chhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHH
Q 001990 350 DIVVGSA-QRFGVPMGYGGPHAAFLAT-SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALL 427 (985)
Q Consensus 350 Di~v~s~-k~lg~P~~~GGP~~G~l~~-~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~ 427 (985)
+++++|. |.++.| |..+|++.+ ++++.+.+.. ... . ...+.|. ....
T Consensus 215 ~i~~~s~sK~~g~~----G~r~G~~~~~~~~~~~~~~~----------~~~------------~--~~~~~~~---~~~~ 263 (377)
T 3fdb_A 215 CITITAPSKAWNIA----GLKCAQIIFSNPSDAEHWQQ----------LSP------------V--IKDGAST---LGLI 263 (377)
T ss_dssp EEEEECSTTTTTCG----GGCCEEEECCSHHHHHHHHH----------SCH------------H--HHCCCCH---HHHH
T ss_pred EEEEEeChHhccCc----chhheEEEeCCHHHHHHHHH----------HHH------------h--hcCCCCH---HHHH
Confidence 6888887 877532 334687776 5666554410 000 0 0011111 1222
Q ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhc-CCCEEEcCCCCcceEEEecCC---HHHHHHHHHHc-Cceeeee
Q 001990 428 ANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQGLPFFDTVKVKCAD---AHAIASAAYKI-EMNLRVV 502 (985)
Q Consensus 428 a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~~~~~~~~~~i~~~~---~~~l~~~L~~~-Gi~~~~~ 502 (985)
+..+++ . .+.+.++++.++..++.+++.+.|++ ++++++......-.+.+.++. ..++.+.|.++ ||.+...
T Consensus 264 a~~~~l--~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g 340 (377)
T 3fdb_A 264 AAEAAY--R-YGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDG 340 (377)
T ss_dssp HHHHHH--H-HCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSBCSEEEEECTTSCCCSCHHHHHHHHHCEECEEG
T ss_pred HHHHHH--h-ccHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCeeEEEEEECcccCCCHHHHHHHHHhCCEEecCC
Confidence 222222 2 33556788899999999999999998 533887643211122344432 35677777665 9988542
Q ss_pred ------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 503 ------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.++.+|++++ ++++++++.++.|..
T Consensus 341 ~~~~~~~~~~~Ris~~--~~~e~i~~~l~~l~~ 371 (377)
T 3fdb_A 341 AWFGEDGTGFCRLNFA--TSREVLEEAIDRMAK 371 (377)
T ss_dssp GGGCGGGTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred hhccCCCCCEEEEEeC--CCHHHHHHHHHHHHH
Confidence 2588999988 489999999998864
No 374
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.59 E-value=2.2e-14 Score=164.57 Aligned_cols=272 Identities=12% Similarity=0.072 Sum_probs=182.4
Q ss_pred HHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-----
Q 001990 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----- 288 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~----- 288 (985)
.++++.+|+++|.++.++.+++|++.+++.++.++. ++||+|+++...|+++...++ ..|.+++.++.
T Consensus 77 ~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~---~~gd~Vl~~~p~y~~~~~~~~----~~g~~~~~~~~~~~~~ 149 (397)
T 2zyj_A 77 APLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFL---DEGSPVLLEAPSYMGAIQAFR----LQGPRFLTVPAGEEGP 149 (397)
T ss_dssp HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC---CTTCEEEEEESCCHHHHHHHH----TTCCEEEEEEEETTEE
T ss_pred HHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhC---CCCCEEEEeCCCcHHHHHHHH----HcCCEEEecCcCCCCC
Confidence 346789999999887889899999988887776652 278999999999999887764 35777776643
Q ss_pred --hhhhc-cCC-CEeEEE-EEcC-CCCeeeccH---HHHHHHHHhCCcEEEEEeccccccCC-----CCCCcccce----
Q 001990 289 --KDIDY-KSG-DVCGVL-VQYP-GTEGEVLDY---GDFIKNAHANGVKVVMATDLLALTIL-----KPPGELGAD---- 350 (985)
Q Consensus 289 --~~l~~-l~~-~t~~V~-v~~p-n~~G~i~dl---~~I~~~a~~~galliV~a~~~alg~l-----~~p~~~GaD---- 350 (985)
+++++ +++ ++++|+ +.+| |.+|.+.|. ++|+++|+++|+++++| +..+.... .+...++.|
T Consensus 150 d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~D-e~~~~~~~~g~~~~~~~~~~~~~~~~ 228 (397)
T 2zyj_A 150 DLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVED-DAYRELYFGEARLPSLFELAREAGYP 228 (397)
T ss_dssp CHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEE-CTTTTCBCSSCCCCCHHHHHHHHTCC
T ss_pred CHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEe-CCcccccCCCCCCCchhhhCcccCCC
Confidence 45655 543 788875 5677 789998764 58999999999999995 33333221 111234444
Q ss_pred --EEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHH
Q 001990 351 --IVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALL 427 (985)
Q Consensus 351 --i~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~ 427 (985)
++++|. |.|+ | |-.+|++++++++.+.+.... . . ...+++...
T Consensus 229 ~~i~~~s~sK~~~-~----G~r~G~~~~~~~~~~~l~~~~-------------------------~-~--~~~~~~~~~- 274 (397)
T 2zyj_A 229 GVIYLGSFSKVLS-P----GLRVAFAVAHPEALQKLVQAK-------------------------Q-G--ADLHTPMLN- 274 (397)
T ss_dssp CEEEEEESTTTTC-G----GGCCEEEECCHHHHHHHHHHH-------------------------H-H--HHSSCCHHH-
T ss_pred eEEEEeccccccc-c----cceeEEEecCHHHHHHHHHHH-------------------------H-h--hcCCCCHHH-
Confidence 888887 8775 3 234699999988776541100 0 0 001111111
Q ss_pred HHHHHHHHHHcCc-chHHHHHHHHHHHHHHHHHHHhcC-C-CEEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeee
Q 001990 428 ANMAAMYAVYHGP-EGLKTIAQRVHGLAGTFALGLKKL-G-TVEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRV 501 (985)
Q Consensus 428 a~~aa~y~~~~g~-~Gl~~i~~~~~~~a~~l~~~L~~~-g-~~~~~~~~~~~~~~i~~~~---~~~l~~~L~~~Gi~~~~ 501 (985)
..++..++. .+. +.++++.++..++.+++.+.|++. + |+++..+....-+.+..+. ..++.++|.++||.+..
T Consensus 275 ~~a~~~~l~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~gi~v~~ 353 (397)
T 2zyj_A 275 QMLVHELLK-EGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMELPKGLSAEGLFRRALEENVAFVP 353 (397)
T ss_dssp HHHHHHHHT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSBSSEEEEECSTTCCHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCccEEEEEEcCCCCCHHHHHHHHHHCCCEEec
Confidence 111111122 121 457788888889999999999874 2 3777532212234455542 78899999999998754
Q ss_pred e--------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 502 V--------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 502 ~--------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
. .++.+|++++.. +++|++++++.|..
T Consensus 354 g~~f~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~ 388 (397)
T 2zyj_A 354 GGPFFANGGGENTLRLSYATL-DREGIAEGVRRLGR 388 (397)
T ss_dssp SGGGCTTSCCTTEEEEECSSS-CHHHHHHHHHHHHH
T ss_pred hHHhcCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHH
Confidence 2 247899999986 89999999999974
No 375
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.59 E-value=3.1e-13 Score=154.63 Aligned_cols=304 Identities=13% Similarity=0.050 Sum_probs=191.6
Q ss_pred CCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHHHHHHHHHhhCC---CCc-ceeeccchHHHHHHHHHHh
Q 001990 173 MGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGL---PMS-NASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 173 ~g~~~~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g~---~~~-~~sl~~~~ta~~ea~~~a~ 248 (985)
.|.-+...|+.+.+++.+...-...|.+. +|..+...++.+.+.+..|. ++. ++.+++|+|.+++.++.++
T Consensus 37 ~~~~~~~~~~~v~~a~~~~~~~~~~y~~~-----~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~ 111 (396)
T 3jtx_A 37 IGEPKHPTPKVITDALTASLHELEKYPLT-----AGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTV 111 (396)
T ss_dssp CCSCCSCCCHHHHHHHHHTGGGGGSCCCT-----TCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHH
T ss_pred CcCCCCCCCHHHHHHHHHHhhhccCCCCC-----CCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHH
Confidence 33334446777766665543334455442 22223233334455555574 466 8889999998888877665
Q ss_pred hhhcCCC-----CEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---------hhhhc-cCCCEeEEEEEcC-CCCeee
Q 001990 249 NIQKGKK-----KTFIIASNCHPQTIDICITRADGFDIKVVVSDL---------KDIDY-KSGDVCGVLVQYP-GTEGEV 312 (985)
Q Consensus 249 ~~~~~~g-----~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~---------~~l~~-l~~~t~~V~v~~p-n~~G~i 312 (985)
. . +| |+|+++...|+.+...++. .|.+++.++. +++++ +.+++++|++++| |.+|.+
T Consensus 112 ~-~--~g~~~~~d~vl~~~p~~~~~~~~~~~----~g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~nptG~~ 184 (396)
T 3jtx_A 112 L-N--PVSDGIKPAIVSPNPFYQIYEGATLL----GGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVCSPNNPSGSV 184 (396)
T ss_dssp C-C--C---CCCCEEEEEESCCHHHHHHHHH----TTCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEEESSCTTTCCC
T ss_pred h-C--CCCccCCCEEEEcCCCcHhHHHHHHH----cCCEEEEeecCCCCCccCHHHHHHhhccCcEEEEEECCCCCCCCc
Confidence 3 2 54 7999999999988887643 5778777654 34444 5568999999998 689998
Q ss_pred cc---HHHHHHHHHhCCcEEEEEeccccccCCC--CC-C----------cccceEEEecC-ccccccCCCCCCceEEEEE
Q 001990 313 LD---YGDFIKNAHANGVKVVMATDLLALTILK--PP-G----------ELGADIVVGSA-QRFGVPMGYGGPHAAFLAT 375 (985)
Q Consensus 313 ~d---l~~I~~~a~~~galliV~a~~~alg~l~--~p-~----------~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~ 375 (985)
.+ +++|+++|+++|+++++| +..+..... .+ . +++.++++.|. |.++.| |-.+|++..
T Consensus 185 ~~~~~l~~i~~~~~~~~~~li~D-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~ 259 (396)
T 3jtx_A 185 LDLDGWKEVFDLQDKYGFIIASD-ECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVP----GLRSGFVAG 259 (396)
T ss_dssp CCHHHHHHHHHHHHHHCCEEEEE-CTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCG----GGCCEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCEEEEE-ccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCc----ccceEEEEe
Confidence 75 455999999999999995 333321111 11 1 36788999987 777543 334689988
Q ss_pred chhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH
Q 001990 376 SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAG 455 (985)
Q Consensus 376 ~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~ 455 (985)
++++++.+... .+ ....+.|. ....+..++ +. ..+.++++.++..++.+
T Consensus 260 ~~~~~~~~~~~----------------------~~--~~~~~~~~---~~~~a~~~~--l~--~~~~~~~~~~~~~~~~~ 308 (396)
T 3jtx_A 260 DAELLKNFLLY----------------------RT--YHGSAMSI---PVQRASIAA--WD--DEQHVIDNRRLYQEKFE 308 (396)
T ss_dssp CHHHHHHHHHH----------------------HH--HHTCCCCH---HHHHHHHHH--HH--CCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH----------------------Hh--hcccCCCH---HHHHHHHHH--hC--CHHHHHHHHHHHHHHHH
Confidence 88877655100 00 00011111 122222222 12 25668888899999999
Q ss_pred HHHHHHhcCCCEEEcCCCCcceEEEecCC--HHHHHHHHH-HcCceeeee------------cCCeEEEEeccCCCHHHH
Q 001990 456 TFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAY-KIEMNLRVV------------DSNTVTASFDETTTLEDV 520 (985)
Q Consensus 456 ~l~~~L~~~g~~~~~~~~~~~~~~i~~~~--~~~l~~~L~-~~Gi~~~~~------------~~~~lris~~~~~t~edi 520 (985)
++.+.|++. +.+.......-+.+.++. ..++.++|. ++||.+... ..+.+|++++. +++++
T Consensus 309 ~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~--~~~~i 384 (396)
T 3jtx_A 309 RVIPILQQV--FDVKLPDASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA--DVATC 384 (396)
T ss_dssp HHHHHHTTT--SCCCCCSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS--CHHHH
T ss_pred HHHHHHHhc--CCccCCCeeEEEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC--CHHHH
Confidence 999999875 222221111123445553 788888885 569987431 24789999876 99999
Q ss_pred HHHHHHHh
Q 001990 521 DKLFIVFA 528 (985)
Q Consensus 521 d~ll~~l~ 528 (985)
+++++.|.
T Consensus 385 ~~~l~~l~ 392 (396)
T 3jtx_A 385 VKAAEDIV 392 (396)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999886
No 376
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.59 E-value=8.1e-14 Score=159.89 Aligned_cols=279 Identities=10% Similarity=0.012 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---
Q 001990 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~--- 288 (985)
...++++.+|+++|.+ ++.+++|||.+++.++.+++.. +||+|+++...|+++...++. .|++++.++.
T Consensus 33 ~~~~l~~~la~~~~~~--~v~~~~ggt~al~~~~~~l~~~--~gd~Vl~~~~~~~~~~~~~~~----~g~~~~~v~~~~~ 104 (394)
T 1o69_A 33 FVNRFEQSVKDYSKSE--NALALNSATAALHLALRVAGVK--QDDIVLASSFTFIASVAPICY----LKAKPVFIDCDET 104 (394)
T ss_dssp HHHHHHHHHHHHHCCS--EEEEESCHHHHHHHHHHHTTCC--TTCEEEEESSSCGGGTHHHHH----TTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCCC--CCCEEEECCCccHHHHHHHHH----cCCEEEEEEeCCC
Confidence 4567889999999984 5888999999888887776333 789999999999999988764 5888888764
Q ss_pred -----hhhhc-cCC---CEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCC---CCc-ccceEEEec
Q 001990 289 -----KDIDY-KSG---DVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP---PGE-LGADIVVGS 355 (985)
Q Consensus 289 -----~~l~~-l~~---~t~~V~v~~pn~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~---p~~-~GaDi~v~s 355 (985)
+++++ +++ ++++|++++ ++|...|+++|.++|+++|+++++| +..+.|.... .+. .++|+..++
T Consensus 105 ~~~d~~~l~~~i~~~~~~~~~v~~~~--~~G~~~~l~~i~~l~~~~~~~li~D-ea~~~g~~~~~~~~~~~~~~~~~s~s 181 (394)
T 1o69_A 105 YNIDVDLLKLAIKECEKKPKALILTH--LYGNAAKMDEIVEICKENDIVLIED-AAEALGSFYKNKALGTFGEFGVYSYN 181 (394)
T ss_dssp SSBCHHHHHHHHHHCSSCCCEEEEEC--GGGCCCCHHHHHHHHHHTTCEEEEE-CTTCTTCEETTEETTSSSSEEEEECC
T ss_pred CCcCHHHHHHHHhcccCCceEEEEEC--CCCChhhHHHHHHHHHHcCCEEEEE-CcCcccceeCCcccccccCcEEEEEe
Confidence 34554 544 689999886 6899999999999999999999995 3444433211 122 468888887
Q ss_pred C-ccccccCCCCCCceEEEEEc-hhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHH
Q 001990 356 A-QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 356 ~-k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~ 433 (985)
. |.++ |+++|+++++ +++.+.+.....+. .+ ....| |. +..++..+|+++ .+.+++
T Consensus 182 ~~K~l~------~~~~G~~~~~~~~l~~~l~~~~~~~-~~--~~~~~----~~--~~~g~~~~~~~~---~aa~~l---- 239 (394)
T 1o69_A 182 GNKIIT------TSGGGMLIGKNKEKIEKARFYSTQA-RE--NCLHY----EH--LDYGYNYRLSNV---LGAIGV---- 239 (394)
T ss_dssp TTSSSC------CSSCEEEEESCHHHHHHHHHHTBTC-CC--SSSSC----CC--SSCCCBCBCCHH---HHHHHH----
T ss_pred CCccCC------CCCceEEEECCHHHHHHHHHHHHhc-cc--cCccc----cc--cccCcccCcCHH---HHHHHH----
Confidence 6 6553 3457999995 67665542110000 00 00101 11 011122233333 111111
Q ss_pred HHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCC-----CCcceEEEecC----------------------C--
Q 001990 434 YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-----PFFDTVKVKCA----------------------D-- 484 (985)
Q Consensus 434 y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-----~~~~~~~i~~~----------------------~-- 484 (985)
.. .+-+++..++..++.+++++.|+++ +++... +.+..+.+.++ +
T Consensus 240 --~~--l~~l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (394)
T 1o69_A 240 --AQ--MEVLEQRVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPK 313 (394)
T ss_dssp --HH--HTTHHHHHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHH
T ss_pred --HH--HHHHHHHHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEEecchhhccccccccccccccccccccC
Confidence 11 1236677888899999999999886 665532 12223444443 2
Q ss_pred HHHHHHHHHHcCceeeeec---------C---------------CeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 485 AHAIASAAYKIEMNLRVVD---------S---------------NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 ~~~l~~~L~~~Gi~~~~~~---------~---------------~~lris~~~~~t~edid~ll~~l~~ 529 (985)
..++.+.|.++||.++... . ..+++..+.++|++|+++++++|+.
T Consensus 314 ~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~ 382 (394)
T 1o69_A 314 ISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILK 382 (394)
T ss_dssp HHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 6789999999999775320 0 3466667889999999999999973
No 377
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.59 E-value=1.1e-13 Score=159.81 Aligned_cols=275 Identities=10% Similarity=0.047 Sum_probs=178.8
Q ss_pred HHHHHHHHhhC------------CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeE
Q 001990 215 NFQTMIADLTG------------LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIK 282 (985)
Q Consensus 215 e~q~~ia~L~g------------~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~ 282 (985)
++++.+|++++ .++.++.+++|+|.+++.++.++. . +||+|+++...|+++...++ ..|++
T Consensus 79 ~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~-~--~gd~vl~~~p~y~~~~~~~~----~~g~~ 151 (416)
T 1bw0_A 79 EAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAIC-D--AGDYALVPQPGFPHYETVCK----AYGIG 151 (416)
T ss_dssp HHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHC-C--TTCEEEEEESCCTHHHHHHH----HTTCE
T ss_pred HHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhC-C--CCCEEEEcCCCcHhHHHHHH----HcCcE
Confidence 45677787777 567789899999988887776652 2 78999999999999887764 35777
Q ss_pred EEEeCc----------hhhhc-cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEeccccc----cC---
Q 001990 283 VVVSDL----------KDIDY-KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLAL----TI--- 340 (985)
Q Consensus 283 v~~~~~----------~~l~~-l~~~t~~V~v~~p-n~~G~i~d---l~~I~~~a~~~galliV~a~~~al----g~--- 340 (985)
++.++. +++++ +++++++|++.+| |.+|.+.| +++|+++|+++|+++++|. ..+. |.
T Consensus 152 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~g~~~~ 230 (416)
T 1bw0_A 152 MHFYNCRPENDWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDE-IYAGMVFKGKDPN 230 (416)
T ss_dssp EEEEEEEGGGTTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEEC-TTTTCBCCSSCTT
T ss_pred EEEeecCcccCCCCCHHHHHHHhccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEc-cccccccCCCCCC
Confidence 766542 34555 7778999999988 67999988 9999999999999999952 2222 11
Q ss_pred --CCCCCcc---cceEEEecC-ccccccCCCCCCceEEEEEchh--hHhcCCCceeeeeecCCCCcceEEeccccccccc
Q 001990 341 --LKPPGEL---GADIVVGSA-QRFGVPMGYGGPHAAFLATSQE--YKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIR 412 (985)
Q Consensus 341 --l~~p~~~---GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~--~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~r 412 (985)
..+...+ +-+++++|. |.|+.| |-.+|+++++++ +.+.+-.. + + ...
T Consensus 231 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~----Glr~G~~~~~~~~~~~~~~~~~-----------------~--~--~~~ 285 (416)
T 1bw0_A 231 ATFTSVADFETTVPRVILGGTAKNLVVP----GWRLGWLLYVDPHGNGPSFLEG-----------------L--K--RVG 285 (416)
T ss_dssp CCCCCTTSSCCSCCEEEEEESTTTTSCG----GGCCEEEEEECTTCSCHHHHHH-----------------H--H--HHH
T ss_pred CCccCHHHccCCCcEEEEecchhhCCCC----CceEEEEEeeCchhhHHHHHHH-----------------H--H--HHh
Confidence 1111222 235777776 876533 223688887653 32221000 0 0 000
Q ss_pred ccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecC-------C-
Q 001990 413 RDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCA-------D- 484 (985)
Q Consensus 413 re~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~-------~- 484 (985)
....+.|. ....++.++ +.....++++++.++..++.+++.+.|++++|+++..+....-+.+.++ .
T Consensus 286 ~~~~~~~~---~~~~a~~~~--l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (416)
T 1bw0_A 286 MLVCGPCT---VVQAALGEA--LLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKT 360 (416)
T ss_dssp HHHTCSCH---HHHHHHHHH--HHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSSCCS
T ss_pred ccccCCCc---HHHHHHHHH--HhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCHHHcCCCCC
Confidence 00011111 122222222 3434466788999999999999999999883388763221111223332 2
Q ss_pred HHHHHHHHH-HcCceeeee----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 485 AHAIASAAY-KIEMNLRVV----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 ~~~l~~~L~-~~Gi~~~~~----~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
..++.++|. ++||.+... .++.+|++++ ++++++++.++.|..
T Consensus 361 ~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~--~~~e~l~~~l~~l~~ 408 (416)
T 1bw0_A 361 DVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTT--RPVEVYREAVERIKA 408 (416)
T ss_dssp HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCEEEecccccCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 678888885 789988643 2578999995 689999999988863
No 378
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.37 E-value=1e-16 Score=183.86 Aligned_cols=299 Identities=12% Similarity=0.092 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHHhC--CCccc-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcCcEEEEEe
Q 001990 632 EMFNNLGEWLCTITG--FDSFS-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCGMKIVSVG 708 (985)
Q Consensus 632 ~~~~el~~~la~l~G--~~~~~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~ 708 (985)
++.+++.+++++.+| .+... +++++|++++.+++.++. .++++|+++.+.|..+...++..|.+++.+|
T Consensus 70 ~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~--------~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~ 141 (392)
T 3b1d_A 70 ELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFT--------KEGEAVLINSPVYPPFARSVRLNNRKLVSNS 141 (392)
Confidence 344455555555666 33333 444555555544433331 3567899988877766666777899999998
Q ss_pred CC-CC--CCCCHHHHHHHHHhcCCCeEEEEEEcC-CCcccccc--CHHHHHHHHHHcCCEEEEEccccccc-cC--CCCC
Q 001990 709 TD-AK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEE--GIDEICKIIHDNGGQVYMDGANMNAQ-VG--LTSP 779 (985)
Q Consensus 709 ~~-~~--g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~--di~eI~~la~~~g~lliVD~a~~~~~-~g--~~~~ 779 (985)
.+ .+ +.+|+++|++++++ +++++|++++| |++|.+.+ ++++|+++|+++|+++++|+++.... .+ ....
T Consensus 142 ~~~~~g~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~ 219 (392)
T 3b1d_A 142 LKEENGLFQIDFEQLENDIVE--NDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSF 219 (392)
Confidence 85 32 35899999999863 46788888888 46898752 49999999999999999999985311 11 0011
Q ss_pred ---Cc--CCCcEEEeCCcccccccCCCCCCcceeeeecc-cccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHH
Q 001990 780 ---GY--IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKK-HLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALIL 853 (985)
Q Consensus 780 ---g~--~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~-~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~ 853 (985)
.. .+.++++.|++|+|+. +|.++|++++++ ++.+.+..... ...+.+. +....
T Consensus 220 ~~~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~~~-----------~~~~~~~------~~~~~ 278 (392)
T 3b1d_A 220 NTVSPDFKDFALVLSSATKTFNI----AGTKNSYAIIENPTLCAQFKHQQL-----------VNNHHEV------SSLGY 278 (392)
Confidence 01 3445778888999853 467899998864 46655432110 0000111 11111
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecCccccCCCCHHHHHHHHH-HCC
Q 001990 854 PISYTYIAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYG 931 (985)
Q Consensus 854 ~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~-e~G 931 (985)
.++.+.+.. +.+.+.+..++..++.+++.+.|++ ...+....+.+.++ +.++++. .+.+..++.+.|. ++|
T Consensus 279 ~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~i~~~~----~~~~~~~l~~~l~~~~g 351 (392)
T 3b1d_A 279 IATETAYRY-GKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQGTYL--IWLDFSD----YGLTDDALFTLLHDQAK 351 (392)
Confidence 222233332 2334555556667777888888765 21222211111111 1244431 1245667889996 789
Q ss_pred CccCCCC-CC--CCCEEEEeccCCCCHHhhchHHHHHHHHHHHHH
Q 001990 932 FHGPTMS-WP--VPGTLMIEPTESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 932 i~~~~~~-~p--v~~~lris~t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
|.+.... +. .++.+|++++. ++++|+ ++++.|+++++
T Consensus 352 i~v~~g~~f~~~~~~~iRi~~~~--~~e~i~---~~l~~l~~~l~ 391 (392)
T 3b1d_A 352 VILNRGSDYGSEGELHARLNIAA--PKSLVE---EICKRIVCCLP 391 (392)
Confidence 9875422 21 24679999764 578899 99988887654
No 379
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.59 E-value=3.1e-14 Score=164.44 Aligned_cols=243 Identities=17% Similarity=0.169 Sum_probs=164.8
Q ss_pred HHHHHHHHHHhhCCCCcceee---ccchHHHHHHHHHHhhhhcCCCCEEEEcC-CCChhHHHHH-------HHhhcCCCe
Q 001990 213 LLNFQTMIADLTGLPMSNASL---LDEGTAAAEAMAMCNNIQKGKKKTFIIAS-NCHPQTIDIC-------ITRADGFDI 281 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl---~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~-~~h~s~~~~~-------~~~a~~~gi 281 (985)
..++++.+|+++|.+.+ .+ +.+||+++.+++.++ +. +||+||+++ ..|+.....+ ...++..|+
T Consensus 76 ~~~Le~~lA~l~g~e~a--lv~p~~~sGt~A~~~al~al-l~--pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~ 150 (427)
T 3hvy_A 76 RDSLDRVYANIFNTESA--FVRPHFVNGTHAIGAALFGN-LR--PNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGV 150 (427)
T ss_dssp HHHHHHHHHHHHTCSEE--EEETTCCSHHHHHHHHHHHT-CC--TTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTC
T ss_pred HHHHHHHHHHHhCCCce--EEeCCCCcHHHHHHHHHHHh-cC--CCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCC
Confidence 45577899999999874 44 689998888777765 23 899999999 8898877655 122345799
Q ss_pred EEEEeCc-------hhhhc-cC--CCEeEEEEEc----C-CCCeeeccHHHHHHHHHh--CCcEEEEEeccccccC-CCC
Q 001990 282 KVVVSDL-------KDIDY-KS--GDVCGVLVQY----P-GTEGEVLDYGDFIKNAHA--NGVKVVMATDLLALTI-LKP 343 (985)
Q Consensus 282 ~v~~~~~-------~~l~~-l~--~~t~~V~v~~----p-n~~G~i~dl~~I~~~a~~--~galliV~a~~~alg~-l~~ 343 (985)
+++.+|. +++++ ++ ++|++|++++ | |++|.+.|+++|+++||+ +|++++|| +.++.+. ...
T Consensus 151 ~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD-~a~~~~~~~~~ 229 (427)
T 3hvy_A 151 KYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVD-NCYGEFVEEKE 229 (427)
T ss_dssp EEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEE-CTTCTTTSSSC
T ss_pred EEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEE-CCccccccCCC
Confidence 9998865 45665 66 7899999998 8 689999999999999999 89999995 4556555 456
Q ss_pred CCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccc
Q 001990 344 PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT 422 (985)
Q Consensus 344 p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t 422 (985)
|.++|+|++++|. |.|+++ |.|..|++++++++++++..+.. . + .+...-+.+.
T Consensus 230 p~~~gaDiv~~S~sK~lgg~---g~~~GG~i~~~~~li~~l~~~~~-----~---~-----------~~g~~~~~~~--- 284 (427)
T 3hvy_A 230 PTDVGADIIAGSLIKNIGGG---IATTGGYIAGKEEYVTQATFRVT-----V---P-----------GIGGECGSTF--- 284 (427)
T ss_dssp GGGGTCSEEEEETTSGGGTT---TCCSCEEEEECHHHHHHHHHHHS-----C---T-----------TTGGGCCCCT---
T ss_pred CcccCCeEEEECCccccccc---ccceEEEEEECHHHHHHHHHHhh-----c---C-----------CcccccCCCH---
Confidence 7789999999998 888642 22556999999988876521100 0 0 0000101000
Q ss_pred hhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCC---Ccc-eEEEecCC---HHHHHHHHHHc
Q 001990 423 AQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP---FFD-TVKVKCAD---AHAIASAAYKI 495 (985)
Q Consensus 423 ~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~---~~~-~~~i~~~~---~~~l~~~L~~~ 495 (985)
...+. ...|.+-+..+.++..+++.++++.|+++| +++...+ ..+ .++|.+.+ +.++.+.|...
T Consensus 285 -~~a~~-------~~~gl~~~~~r~~~~~~~a~~la~~L~~~g-~~V~p~~~~~~~~li~~~~l~~~~~~~~f~~~l~~~ 355 (427)
T 3hvy_A 285 -GVMRS-------LYEGLFMAPHVTIEAVKGAVFCARIMELAG-FDVLPKYNDKRTDIIQAIKFNDEKKLIDFIKGIQTA 355 (427)
T ss_dssp -TCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CEEESCTTSCCSSSEEEEECSSHHHHHHHHHHHHHT
T ss_pred -HHHHH-------HHHhHhHHHHHHHHHHHHHHHHHHHHHhCC-CeecCCCCCCCceEEEEEeCCCHHHHHHHHHHhccc
Confidence 00111 122222345677788899999999999998 7775321 111 34454443 45566666654
No 380
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.58 E-value=5.4e-14 Score=157.93 Aligned_cols=272 Identities=16% Similarity=0.165 Sum_probs=169.5
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe------
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS------ 286 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~------ 286 (985)
..++++.+|+++|.+. +.++.+||.+...++.++. ++||+|++++..|++...... .++..|++++.+
T Consensus 40 ~~~l~~~la~~~g~~~--~~~~~~gt~a~~~~~~~~~---~~gd~Vl~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~ 113 (347)
T 1jg8_A 40 INELERLAAETFGKEA--ALFVPSGTMGNQVSIMAHT---QRGDEVILEADSHIFWYEVGA-MAVLSGVMPHPVPGKNGA 113 (347)
T ss_dssp HHHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHHC---CTTCEEEEETTCHHHHSSTTH-HHHHTCCEEEEECEETTE
T ss_pred HHHHHHHHHHHhCCce--EEEecCcHHHHHHHHHHhc---CCCCEEEEcCcchhhhccccc-hhhccCeEEEEecCCCCc
Confidence 3467889999999864 6678888877666555542 388999999999987653110 012346666655
Q ss_pred -Cchhhhc-cCC------CEeEEEEEcC-CCC-eeec---cHHHHHHHHHhCCcEEEEEe-ccc-cccCC-CCCCc--cc
Q 001990 287 -DLKDIDY-KSG------DVCGVLVQYP-GTE-GEVL---DYGDFIKNAHANGVKVVMAT-DLL-ALTIL-KPPGE--LG 348 (985)
Q Consensus 287 -~~~~l~~-l~~------~t~~V~v~~p-n~~-G~i~---dl~~I~~~a~~~galliV~a-~~~-alg~l-~~p~~--~G 348 (985)
|++++++ +++ +|++|++.+| |++ |.+. ++++|+++|+++|+++++|. +.. ++... .++.. .+
T Consensus 114 ~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~ 193 (347)
T 1jg8_A 114 MDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGY 193 (347)
T ss_dssp ECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHT
T ss_pred cCHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhccc
Confidence 3355665 654 6999999998 577 9985 46799999999999999953 211 11110 11222 46
Q ss_pred ceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHH
Q 001990 349 ADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALL 427 (985)
Q Consensus 349 aDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~ 427 (985)
+|.++.+. |+|+.| -.++++.++++++++.. + +.. ..++.+. .++.
T Consensus 194 ~d~~~~s~sK~l~~~------~G~~~~~~~~~~~~~~~--------------~------~~~----~~~~~~~---~~~~ 240 (347)
T 1jg8_A 194 ADSVMFCLSKGLCAP------VGSVVVGDRDFIERARK--------------A------RKM----LGGGMRQ---AGVL 240 (347)
T ss_dssp CSEEEEESSSTTCCS------SCEEEEECHHHHHHHHH--------------H------HHH----HTCCCSS---THHH
T ss_pred ccEEEEecccccCCC------ceEEEEcCHHHHHHHHH--------------H------HHH----cCCchhH---HHHH
Confidence 89888777 877643 11466777777654310 0 000 0001111 1121
Q ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEc-CCCCcceEEEecC--C--HHHHHHHHHHcCceeeee
Q 001990 428 ANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ-GLPFFDTVKVKCA--D--AHAIASAAYKIEMNLRVV 502 (985)
Q Consensus 428 a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~-~~~~~~~~~i~~~--~--~~~l~~~L~~~Gi~~~~~ 502 (985)
+..+...+..+ .+-++ +..++++++++.|+++| +++. .++..+-+.+.++ + ..++.++|.++||.++..
T Consensus 241 ~~~~~~~l~~~-~~~~~----~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~ 314 (347)
T 1jg8_A 241 AAAGIIALTKM-VDRLK----EDHENARFLALKLKEIG-YSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAV 314 (347)
T ss_dssp HHHHHHHHHHS-STTHH----HHHHHHHHHHHHHHHHT-CBCCGGGCCSSEEEEECTTSSSCHHHHHHHHHHHTEECEEE
T ss_pred HHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHhcC-ceeccCCCcceEEEEEcccccCCHHHHHHHHHHCCCEEecC
Confidence 11111111221 12232 23356788888888775 7652 2222233445554 2 788999999999998765
Q ss_pred cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 503 DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 503 ~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
..+.+|++++.++|++|+++++++|..
T Consensus 315 ~~~~iRl~~~~~~~~e~i~~~~~~l~~ 341 (347)
T 1jg8_A 315 SDTEIRLVTHKDVSRNDIEEALNIFEK 341 (347)
T ss_dssp ETTEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999973
No 381
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.36 E-value=1.2e-16 Score=186.45 Aligned_cols=341 Identities=13% Similarity=0.079 Sum_probs=199.0
Q ss_pred CHHHHHHHHHHHhcCccCcCcccccccceecccCccccccccccccccccCCCCcchhhhcHHHHHHHHHHHHHHHh-CC
Q 001990 569 TEHELLRYIHLLQSKELSLCHSMIPLGSCTMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTIT-GF 647 (985)
Q Consensus 569 se~e~~~~l~~l~~~~~~~~~~~~~lGs~~~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~el~~~la~l~-G~ 647 (985)
.+.+..+|++-.+.- +...||++.+.+......+... . ....+|. +...++++.|++++ +.
T Consensus 95 ~D~dG~~yiD~~~~~------~~~~lGh~~p~V~~Av~~q~~~-~-~~~~~~~----------~~~~~Lae~L~~~~p~~ 156 (465)
T 2yky_A 95 QDVDGHAYVNFLGEY------TAGLFGHSHPVIRAAVERALAV-G-LNLSTQT----------ENEALFAEAVCDRFPSI 156 (465)
Confidence 344555555543321 2345788777665544333211 1 1111121 23557889999998 44
Q ss_pred CccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEc-CCCCCCcHHHH---HhcCc--EEEEEeCCCCCCCCHHHHH
Q 001990 648 DSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIP-VSAHGTNPATA---AMCGM--KIVSVGTDAKGNINIEELR 721 (985)
Q Consensus 648 ~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~-~~~Hg~~~~~~---~~~G~--~v~~v~~~~~g~iDle~L~ 721 (985)
+. .++++||++++++++.++|.| +++++||+. ..+||.....+ ...|+ .+..+|. .|+++|+
T Consensus 157 ~~-v~~~nSGseA~~~Aik~ar~~------tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-----~d~~~l~ 224 (465)
T 2yky_A 157 DL-VRFTNSGTEANLMALATATAI------TGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-----NDVEGTA 224 (465)
Confidence 43 467889999888887776654 345677764 46777554433 12344 3444444 3899999
Q ss_pred HHHHhcCCCeEEEEEEcC-CCcccccc---CHHHHHHHHHHcCCEEEEEccccccccCC-CCCCcC--CCcEEEeCCccc
Q 001990 722 KAAEANRDNLSTLMVTYP-STHGVYEE---GIDEICKIIHDNGGQVYMDGANMNAQVGL-TSPGYI--GADVCHLNLHKT 794 (985)
Q Consensus 722 ~~i~~~~~~t~~Vvi~~p-n~~G~i~~---di~eI~~la~~~g~lliVD~a~~~~~~g~-~~~g~~--g~Di~~~s~hKt 794 (985)
++++++++++++|+++.. +.+|.+.+ .+++|+++|+++|+++|+|+++. ...+. .....+ .+|+++ +.|+
T Consensus 225 ~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pDi~t--~sK~ 301 (465)
T 2yky_A 225 DLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISADLTT--LGKY 301 (465)
Confidence 999755467888887642 45787651 29999999999999999999986 32110 001112 267764 4588
Q ss_pred ccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhchhhHHHHHHH
Q 001990 795 FCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKI 874 (985)
Q Consensus 795 l~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~ 874 (985)
++ ||..+|++++++++++.+.....+.. ...+++.+++..++++.+.|..+.++++ .++
T Consensus 302 lg-----~G~piG~v~~~~~i~~~l~~~~~g~~-------------~~~~T~~~npla~aAa~aaL~~l~~~~~---~~~ 360 (465)
T 2yky_A 302 IG-----GGMSFGAFGGRRDLMERFDPARDGAF-------------AHAGTFNNNILTMSAGHAALTQIYTRQA---ASD 360 (465)
Confidence 74 35678999999888776643100000 0001122244445556666776655443 345
Q ss_pred HHHHHHHHHHHHhcc---CCee--EcCCCCceeEEEEEEecC-----cc---ccCCCCHHHHHHHHHHCCCccCCCCCCC
Q 001990 875 AILNANYMAKRLEKH---YPIL--FRGVNGTVAHEFIVDLRG-----LK---NTAGIEPEDVAKRLMDYGFHGPTMSWPV 941 (985)
Q Consensus 875 ~~~~a~~l~~~L~~~---~~i~--~~g~~~~~~~~~vv~~~~-----~~---~~~g~~~~~l~~~L~e~Gi~~~~~~~pv 941 (985)
..++.++++++|++. +.+. ..+ .+.. +.+.+.. +. .........+.+.|.++||++....++
T Consensus 361 ~~~~~~~l~~~L~~~~~~~~~~~~v~g-~G~~---~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~~~- 435 (465)
T 2yky_A 361 LSASGDRFRANLNRIAVENQAPLQFTG-LGSL---GTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRGMY- 435 (465)
Confidence 667778888888752 2221 111 1111 1222210 00 000012457888899999997543332
Q ss_pred CCEEEEeccCCCCHHhhchHHHHHHHHHHHHHHHHH
Q 001990 942 PGTLMIEPTESESKVCHNREDLFFQILLSLTKFTTF 977 (985)
Q Consensus 942 ~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~~~~ 977 (985)
. ++..+|++||| +++++|++++++++.
T Consensus 436 --~----~s~~~t~edid---~~l~~l~~~l~~~~~ 462 (465)
T 2yky_A 436 --A----LSLEIADAGRD---AFAEALADFIGEQRA 462 (465)
Confidence 1 55679999999 999999998877643
No 382
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.58 E-value=7.2e-15 Score=172.40 Aligned_cols=305 Identities=16% Similarity=0.144 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHhCCCccceecChHHHHHHHHHHHHHHH-HHhcCCCCC-CEEEEcCCCCCCc-HHHHHhcCcEEEEE---
Q 001990 634 FNNLGEWLCTITGFDSFSLQPNAGAAGEYAGLMVIRAY-HKARGDHHR-NVCIIPVSAHGTN-PATAAMCGMKIVSV--- 707 (985)
Q Consensus 634 ~~el~~~la~l~G~~~~~~~~~sGa~g~~a~l~air~~-~~~~g~~~~-~~Vlv~~~~Hg~~-~~~~~~~G~~v~~v--- 707 (985)
..++++++++++|.+.. +++++|++|++.++.+++.. ...+|. ++ ++||++ ..|+.. .......|..+...
T Consensus 76 ~~~l~~~la~~~~~~~v-~~t~~gt~A~~~al~~~~~~~~~~~G~-~~~d~Ii~~-~~h~~t~~~~~~~~~~~~~~~~~~ 152 (467)
T 2oqx_A 76 YYALAESVKNIFGYQYT-IPTHQGRGAEQIYIPVLIKKREQEKGL-DRSKMVAFS-NYFFDTTQGHSQINGCTVRNVYIK 152 (467)
T ss_dssp HHHHHHHHHHHHCCSEE-EEEC--CCSHHHHHHHHHHHHHHHHCC-CTTTCEEEE-SSCCHHHHHHHHHTTCEEEECBCT
T ss_pred hHHHHHHHHHHhCcCcE-EEcCCcHHHHHHHHHHHhccccccCCC-CccceEEec-ccccccchhhhhccCcceeecccc
Confidence 45788999999998654 56677877776666665532 011131 22 667776 566432 22334566665543
Q ss_pred ---eCC----CCCCCCHHHHHHHHHhcC-CCeEEEEEEcC-CCc-cccc--cCHHHHHHHHHHcCCEEEEEccccc----
Q 001990 708 ---GTD----AKGNINIEELRKAAEANR-DNLSTLMVTYP-STH-GVYE--EGIDEICKIIHDNGGQVYMDGANMN---- 771 (985)
Q Consensus 708 ---~~~----~~g~iDle~L~~~i~~~~-~~t~~Vvi~~p-n~~-G~i~--~di~eI~~la~~~g~lliVD~a~~~---- 771 (985)
+.+ .++.+|+++|+++|++++ +++++|++++| |++ |.+. .++++|+++|++||+++|+|++|..
T Consensus 153 ~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~ 232 (467)
T 2oqx_A 153 EAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAY 232 (467)
T ss_dssp TTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHH
T ss_pred ccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhh
Confidence 222 346789999999998432 37899999988 455 6653 2589999999999999999988754
Q ss_pred -------cccCCCCCCc------CCCcEEEeCCcccccccCCCCCCcceeeeeccc-ccCc---CCCCc-cccCCCCCCC
Q 001990 772 -------AQVGLTSPGY------IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPF---LPSHP-VVSTGGIPAP 833 (985)
Q Consensus 772 -------~~~g~~~~g~------~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~-l~~~---lpg~~-~g~~~~~~~~ 833 (985)
+..+. .+.. .++|++++++||+|+. |.+|+++++++ +++. +.... .+...
T Consensus 233 ~~~~~~~~~~g~-~~~~~~~~~~~~~d~~~~s~sK~~g~------~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~----- 300 (467)
T 2oqx_A 233 FIKQREAEYKDW-TIEQITRETYKYADMLAMSAKKDAMV------PMGGLLCMKDDSFFDVYTECRTLCVVQEGF----- 300 (467)
T ss_dssp HHHHHCGGGTTS-CHHHHHHHHGGGCSEEEEESSSTTCC------SSCEEEEECSGGGHHHHHHHHHHHHHTTSS-----
T ss_pred hcccccccccCc-cHHHHhhhhhccCCeEEEecccccCC------CCceEEEecChhHHHHHHHHHHhhhccCCc-----
Confidence 22222 1111 2478889999999854 32367777655 3222 11100 00000
Q ss_pred CCCCCCCCcccccchhhhHHHHHHHH-HHHhchhhHHHHHHHHHHHHHHHHHHHhc-cCCeeEcCCCCceeEEEEEEecC
Q 001990 834 EKSQPLGTIAAAPWGSALILPISYTY-IAMMGSKGLTEASKIAILNANYMAKRLEK-HYPILFRGVNGTVAHEFIVDLRG 911 (985)
Q Consensus 834 ~~~~~t~~i~s~~~g~~~~~~~A~a~-l~~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~~~g~~~~~~~~~vv~~~~ 911 (985)
.+... .......++.. +...-.+ +..++..++++++.+.|++ ++.+. +. +.. .+.+++..
T Consensus 301 ----~~~~~------~~~~~~~al~~~l~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~-~~--~~~--~~~~~~~~ 362 (467)
T 2oqx_A 301 ----PTYGG------LEGGAMERLAVGLYDGMNL---DWLAYRIAQVQYLVDGLEEIGVVCQ-QA--GGH--AAFVDAGK 362 (467)
T ss_dssp ----CCCCC------CCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHHHTTCCEE-EE--CSS--CEEEEHHH
T ss_pred ----ccccc------hhhhHHHHHHHhhHhhhhH---HHHHHHHHHHHHHHHHHHHCCCeee-cC--Cce--EEEEechh
Confidence 00000 11111111111 1111111 1233445678889999977 45543 21 111 23345421
Q ss_pred ccccCCCC-----HHHHHHHH-HHCCCccCCCC---C---C--------CCCEEEEeccCC-CCHHhhchHHHHHHHHHH
Q 001990 912 LKNTAGIE-----PEDVAKRL-MDYGFHGPTMS---W---P--------VPGTLMIEPTES-ESKVCHNREDLFFQILLS 970 (985)
Q Consensus 912 ~~~~~g~~-----~~~l~~~L-~e~Gi~~~~~~---~---p--------v~~~lris~t~~-~t~eeId~~~~~i~aL~~ 970 (985)
+. .+.+ ...+.+.| .++||.+.... + | ..+.+|++++.. +|++||+ ++++.|++
T Consensus 363 ~~--~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~---~~~~~l~~ 437 (467)
T 2oqx_A 363 LL--PHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMD---FIIEAFKH 437 (467)
T ss_dssp HS--TTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHH---HHHHHHHH
T ss_pred hc--ccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHHH---HHHHHHHH
Confidence 00 0122 45678888 88999864211 0 1 127899999998 9999999 99999999
Q ss_pred HHHHHH
Q 001990 971 LTKFTT 976 (985)
Q Consensus 971 i~~~~~ 976 (985)
++++..
T Consensus 438 ~l~~~~ 443 (467)
T 2oqx_A 438 VKENAA 443 (467)
T ss_dssp HHHSGG
T ss_pred HHhhhh
Confidence 887644
No 383
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.58 E-value=6.6e-14 Score=160.35 Aligned_cols=274 Identities=15% Similarity=0.103 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhh-hhcCCCCEEEEcCCCC-hhHHHHHHHhhcC---------CC
Q 001990 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQKGKKKTFIIASNCH-PQTIDICITRADG---------FD 280 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~~~~g~~Vlv~~~~h-~s~~~~~~~~a~~---------~g 280 (985)
...++++.+++++|.+..++.+++|||.++++++.+++ +. ++++||+++..| ..+...+.. +.. ..
T Consensus 88 ~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~--~~~~vi~~~~~y~~~~~~~~~~-~g~~~~~~~~~p~~ 164 (395)
T 1vef_A 88 MRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHT--GRKKFVAAMRGFSGRTMGSLSV-TWEPKYREPFLPLV 164 (395)
T ss_dssp HHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHH--SCCEEEEETTCCCCSSHHHHHT-CCCHHHHGGGCSCS
T ss_pred HHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHh--CCCeEEEEcCCcCCCchhhhhh-cCCcccccccCCCC
Confidence 44567889999998777788889999988888776542 23 678888877655 444444431 111 11
Q ss_pred eEEEE---eCchhhhc-cCCCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecccc-ccCCCCC-----C
Q 001990 281 IKVVV---SDLKDIDY-KSGDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLA-LTILKPP-----G 345 (985)
Q Consensus 281 i~v~~---~~~~~l~~-l~~~t~~V~v~~p-n~~G~i~d----l~~I~~~a~~~galliV~a~~~a-lg~l~~p-----~ 345 (985)
..+.. .|++++++ +++++++|+++.+ |.+|.+.| +++|+++|+++|+++++|. ..+ ++....+ .
T Consensus 165 ~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~De-a~~~~~~~g~~~~~~~~ 243 (395)
T 1vef_A 165 EPVEFIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDE-IQTGMGRTGKRFAFEHF 243 (395)
T ss_dssp SCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEEC-TTTTTTTTSSSSTHHHH
T ss_pred CCeeEeCCCcHHHHHHHhccCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEe-cccCCccCCchhHhhhc
Confidence 11333 35577777 7888998887654 56998887 9999999999999999952 333 3211111 1
Q ss_pred cccceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhH
Q 001990 346 ELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQA 425 (985)
Q Consensus 346 ~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~ 425 (985)
..++|++.. +|+|++ |...|++++++++++.+.. +.. ..|... +...
T Consensus 244 ~~~~d~~s~-sK~~~~-----g~~~G~~~~~~~~~~~l~~----------~~~----------------~~~~~~-~~~~ 290 (395)
T 1vef_A 244 GIVPDILTL-AKALGG-----GVPLGVAVMREEVARSMPK----------GGH----------------GTTFGG-NPLA 290 (395)
T ss_dssp TCCCSEEEE-CGGGGT-----TSSCEEEEEEHHHHHTSCT----------TSS----------------CCSSTT-CHHH
T ss_pred CCCCCEEEE-cccccC-----CCceEEEEehHHHHhhhcc----------CCc----------------CCCcCC-CHHH
Confidence 235787733 588863 3457899999888776621 000 011111 1112
Q ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcC--CCCcceEEEecCC-HHHHHHHHH-HcCceeee
Q 001990 426 LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG--LPFFDTVKVKCAD-AHAIASAAY-KIEMNLRV 501 (985)
Q Consensus 426 l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~--~~~~~~~~i~~~~-~~~l~~~L~-~~Gi~~~~ 501 (985)
..+..+++ ..+.. +++.++..++++++++.|++++ ..++. .+...-+.+.++. ..++.+.|. ++||.+..
T Consensus 291 ~~a~~~al--~~~~~---~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~~gi~v~~ 364 (395)
T 1vef_A 291 MAAGVAAI--RYLER---TRLWERAAELGPWFMEKLRAIP-SPKIREVRGMGLMVGLELKEKAAPYIARLEKEHRVLALQ 364 (395)
T ss_dssp HHHHHHHH--HHHHH---HTTHHHHHHHHHHHHHHHHTSC-CTTEEEEEEETTEEEEEESSCSHHHHHHHHHHHCEECEE
T ss_pred HHHHHHHH--HHHHh---CCHHHHHHHHHHHHHHHHHHhh-cCceEEEEEEEEEEEEEEcChHHHHHHHHHHHCCeEEec
Confidence 22222332 33222 3466778889999999999876 32110 1111234455554 778999999 89999876
Q ss_pred ecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001990 502 VDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 502 ~~~~~lris~~~~~t~edid~ll~~l~ 528 (985)
..++.+|++++..++++|+++++++|.
T Consensus 365 ~~~~~iRi~~~~~~~~~~i~~~~~~l~ 391 (395)
T 1vef_A 365 AGPTVIRFLPPLVIEKEDLERVVEAVR 391 (395)
T ss_dssp SSTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 556899999999999999999999986
No 384
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.57 E-value=4e-14 Score=166.17 Aligned_cols=286 Identities=10% Similarity=0.039 Sum_probs=166.4
Q ss_pred HHHHHHHHhhCCCCcc--ee-eccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHH--------HHHHhhcCCCeEE
Q 001990 215 NFQTMIADLTGLPMSN--AS-LLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTID--------ICITRADGFDIKV 283 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~--~s-l~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~--------~~~~~a~~~gi~v 283 (985)
++++.+++++|++.+. +. ...+||.+..++++++. . +||+|++++..|.+.+. .+. ++ +..+++
T Consensus 104 ~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~-~--pGD~Vl~~~~~h~g~l~h~~~~~~~~i~-~~-g~~~~~ 178 (490)
T 2a7v_A 104 LCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALL-Q--PHDRIMGLDLPDGGHLTHGYMSDVKRIS-AT-SIFFES 178 (490)
T ss_dssp HHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHC-C--SCEECCC-------------------------------
T ss_pred HHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHc-C--CCCEecccCccccccccchhhhcchhHH-Hc-CCeEEE
Confidence 4569999999998742 22 33488888888777762 3 89999999988865432 111 11 112222
Q ss_pred EE---------eCchhhhc-cC-CCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEE-ecccc---ccCCCCCCccc
Q 001990 284 VV---------SDLKDIDY-KS-GDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMA-TDLLA---LTILKPPGELG 348 (985)
Q Consensus 284 ~~---------~~~~~l~~-l~-~~t~~V~v~~pn~~G~i~dl~~I~~~a~~~galliV~-a~~~a---lg~l~~p~~~G 348 (985)
+. +|++++++ +. .++++|++..|+ +|.+.|+++|+++||++|++++|| ++... .|....+-. +
T Consensus 179 ~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~s~-~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~-~ 256 (490)
T 2a7v_A 179 MPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSA-YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK-H 256 (490)
T ss_dssp --CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSS-CCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG-T
T ss_pred EecccccccCCcCHHHHHHHHhhcCCcEEEEcCCC-CCCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC-C
Confidence 22 34456766 43 357777776554 467789999999999999999995 33211 122223333 7
Q ss_pred ceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccc--cccCCCccchhH
Q 001990 349 ADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR--DKATSNICTAQA 425 (985)
Q Consensus 349 aDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rr--e~atsni~t~~~ 425 (985)
+|++++|+ |+|++ |..|++++++++.+.-+. .+.+.+ ..+ .+.+++ ..++..-..+..
T Consensus 257 aDiv~~S~hK~l~G------p~GG~i~~~~~~~~~~~~---------~~~~~~-~~l---~~~i~~~~~~g~qggp~~~~ 317 (490)
T 2a7v_A 257 ADIVTTTTHKTLRG------ARSGLIFYRKGVKAVDPK---------TGREIP-YTF---EDRINFAVFPSLQGGPHNHA 317 (490)
T ss_dssp CSEEEEESSGGGCS------CSCEEEEEECSEEEEETT---------TEEEEE-CCC---HHHHHHHHTTTTCCSCCHHH
T ss_pred CCEEEECCcccCcc------ccchheeeccchhccccc---------ccchhh-HHH---HHHHHHHhcccCCCCchHHH
Confidence 99999998 77754 445899887653210000 000000 011 011111 112111112233
Q ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcC-CCCcceEEEecC--C--HHHHHHHHHHcCceee
Q 001990 426 LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG-LPFFDTVKVKCA--D--AHAIASAAYKIEMNLR 500 (985)
Q Consensus 426 l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~~~~~~~~i~~~--~--~~~l~~~L~~~Gi~~~ 500 (985)
+.++.+++ .....+++++..++..+++++|++.|.+.| +++.. ....+.+.+++. + ..++.+.|.+.||.+.
T Consensus 318 iaAla~Al--~~~~~~~~~~~~~~~~~na~~L~~~L~~~G-~~v~~~~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~ 394 (490)
T 2a7v_A 318 IAAVAVAL--KQACTPMFREYSLQVLKNARAMADALLERG-YSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITAN 394 (490)
T ss_dssp HHHHHHHH--HHHHSHHHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECE
T ss_pred HHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHHHcC-cEEecCCCCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEe
Confidence 44444443 222234568888999999999999999987 99874 222233445543 3 6788999999999875
Q ss_pred e---------ecCCeEEEEecc----CCCHHHHHHHHHHHhC
Q 001990 501 V---------VDSNTVTASFDE----TTTLEDVDKLFIVFAG 529 (985)
Q Consensus 501 ~---------~~~~~lris~~~----~~t~edid~ll~~l~~ 529 (985)
. ..++.+|++... ..+++|++++++.|..
T Consensus 395 ~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~ 436 (490)
T 2a7v_A 395 KNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDE 436 (490)
T ss_dssp EECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHH
Confidence 3 125789997644 4689999999999874
No 385
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.57 E-value=2.2e-13 Score=159.00 Aligned_cols=278 Identities=14% Similarity=0.106 Sum_probs=178.0
Q ss_pred HHHHHHHHHhh----CCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeE-------
Q 001990 214 LNFQTMIADLT----GLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIK------- 282 (985)
Q Consensus 214 ~e~q~~ia~L~----g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~------- 282 (985)
.++++.+|+++ +.++.++.+++|++.+++.+ .++ .. +||+|++++..|+++...++.. |.+
T Consensus 114 ~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~-~~l-~~--~gd~Vl~~~p~~~~~~~~~~~~----g~~g~~~~~~ 185 (449)
T 3qgu_A 114 GALREAVASTFYGHAGRAADEIFISDGSKCDIARI-QMM-FG--SKPTVAVQDPSYPVYVDTSVMM----GMTGDHNGTG 185 (449)
T ss_dssp HHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-HHH-HC--SSSCEEEEESCCTHHHHHHHHH----TCSCCBCSSS
T ss_pred HHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHH-HHH-hC--CCCEEEEcCCCChhHHHHHHHc----CCcccccccc
Confidence 35677888887 67777898899999888876 443 23 7899999999999999887653 333
Q ss_pred ---EEEeCch---hhhc-c--CCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEeccccccCCC-----C-
Q 001990 283 ---VVVSDLK---DIDY-K--SGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILK-----P- 343 (985)
Q Consensus 283 ---v~~~~~~---~l~~-l--~~~t~~V~v~~p-n~~G~i~d---l~~I~~~a~~~galliV~a~~~alg~l~-----~- 343 (985)
++.++.+ .+.. + .+++++|++++| |.+|.+.+ +++|+++|+++|+++++| +..+..... +
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~D-ea~~~~~~~~~~~~~~ 264 (449)
T 3qgu_A 186 FDGIEYMVCNPDNHFFPDLSKAKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYD-AAYALYISNPDCPKTI 264 (449)
T ss_dssp BTTEEEEECCGGGTTCCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE-CTTGGGCCCTTSCSSG
T ss_pred cceeEEEecccccCCcCChhHcCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEE-cchHhhhcCCCCCCCH
Confidence 5555432 2221 2 157899999988 67998864 888999999999999995 233321111 1
Q ss_pred ---CCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCC
Q 001990 344 ---PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 344 ---p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsn 419 (985)
+...+.|++++|. |.|+. +|..+|++++++++++.. ... + +.+..+....+.+
T Consensus 265 ~~~~~~~~~~i~~~s~sK~~g~----~G~r~G~~~~~~~~~~~~------------~~~-----~--~~~~~~~~~~~~~ 321 (449)
T 3qgu_A 265 YEIPGADEVAIETCSFSKYAGF----TGVRLGWTVVPKALKYAN------------GEP-----V--HADWNRVMTTCFN 321 (449)
T ss_dssp GGSTTGGGTEEEEEECSGGGTC----TTCCCEEEECCTTCBCTT------------SCB-----H--HHHHHHHHHHSCC
T ss_pred hhccCCCCcEEEEecchhhcCC----ccceeEEEecCHHHHhhh------------hhh-----H--HHHHHHHhhcccC
Confidence 1234678999997 88863 345679998877654320 000 0 0000001111111
Q ss_pred ccchhHHHHHHHHH-HHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecCC--HHHHHHHHHHc-
Q 001990 420 ICTAQALLANMAAM-YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYKI- 495 (985)
Q Consensus 420 i~t~~~l~a~~aa~-y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~--~~~l~~~L~~~- 495 (985)
. . ..+ +..++. .+...+.+.++++.++..++.+++++.|+++| +++.......-+.+.+++ ..++.+.|.++
T Consensus 322 ~-~-~~~-~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 397 (449)
T 3qgu_A 322 G-A-SNI-VQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMG-FSVYGGDDAPYIWVGFPGKPSWDVFAEILERC 397 (449)
T ss_dssp C-C-CHH-HHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEESSSSSEEEEECTTSCHHHHHHHHHHHH
T ss_pred C-C-CHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCC-CeeeCCCCeeEEEEECCCCCHHHHHHHHHHHC
Confidence 1 1 111 222222 11111224577888899999999999999987 776532111223444443 78888888875
Q ss_pred Cceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 496 EMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 496 Gi~~~~~------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
||.+... .++.+|+|+. .++++++++++.|..
T Consensus 398 gI~v~pg~~f~~~~~~~iRis~~--~~~e~i~~~l~~l~~ 435 (449)
T 3qgu_A 398 NIVTTPGSGYGPAGEGFVRASAF--GSRENILEAVRRFKE 435 (449)
T ss_dssp CEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred CEEEecchHhCCCCCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 9987542 2589999954 599999999999874
No 386
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.56 E-value=1.5e-13 Score=158.03 Aligned_cols=270 Identities=11% Similarity=0.075 Sum_probs=178.6
Q ss_pred HHHHHHHHhh----C--CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001990 215 NFQTMIADLT----G--LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 215 e~q~~ia~L~----g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~ 288 (985)
++++.+|+++ | .++.++.+++|+|.++++++.++. . +||+|+++...|+.+...++ ..|.+++.++.
T Consensus 79 ~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~-~--~gd~vl~~~p~~~~~~~~~~----~~g~~~~~v~~ 151 (407)
T 2zc0_A 79 ELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLI-D--PGDVVITENPSYINTLLAFE----QLGAKIEGVPV 151 (407)
T ss_dssp HHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHC-C--TTCEEEEEESCCHHHHHHHH----TTTCEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhc-C--CCCEEEEeCCChHHHHHHHH----HcCCEEEEccc
Confidence 4556777776 8 456688888999988888776652 2 78999999999998877664 45777777643
Q ss_pred -------hhhhc-cC----C--CEeEEE-EEcC-CCCeeeccHH---HHHHHHHhCCcEEEEEeccccccCCC-----CC
Q 001990 289 -------KDIDY-KS----G--DVCGVL-VQYP-GTEGEVLDYG---DFIKNAHANGVKVVMATDLLALTILK-----PP 344 (985)
Q Consensus 289 -------~~l~~-l~----~--~t~~V~-v~~p-n~~G~i~dl~---~I~~~a~~~galliV~a~~~alg~l~-----~p 344 (985)
++|++ ++ + ++++|+ +.+| |.+|.+.|++ +|+++|+++|+++++|. ..+.+... +.
T Consensus 152 ~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~ 230 (407)
T 2zc0_A 152 DNDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDT-AYNFMRYEGGDIVPL 230 (407)
T ss_dssp ETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC-TTTTSBSSCSSCCCG
T ss_pred CCCCCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEC-CCcccccCCCCCCCh
Confidence 45665 54 4 788875 5666 6799998876 99999999999999953 33322221 11
Q ss_pred Cc---ccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCc
Q 001990 345 GE---LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNI 420 (985)
Q Consensus 345 ~~---~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni 420 (985)
.. .+.+++++|. |.|+ | | -.+|++++++++.+.+.... . ..+.
T Consensus 231 ~~~~~~~~~i~~~s~sK~~~-~-G---~r~G~~~~~~~~~~~~~~~~--------------------------~--~~~~ 277 (407)
T 2zc0_A 231 KALDNEGRVIVAGTLSKVLG-T-G---FRIGWIIAEGEILKKVLMQK--------------------------Q--PIDF 277 (407)
T ss_dssp GGGCSSCCEEEEEESTTTTC-T-T---SCCEEEECCHHHHHHHHHHH--------------------------T--TTTS
T ss_pred hhcCCCCCEEEEcccccccC-C-C---cceEEEecCHHHHHHHHHHH--------------------------H--hhcC
Confidence 12 2556788886 8775 3 2 13689999888776541100 0 0011
Q ss_pred cchhH-HHHHHHHHHHHHcC--c-chHHHHHHHHHHHHHHHHHHHhcC-CCEEEcCCCCcceEEEecCC---HHHHHHHH
Q 001990 421 CTAQA-LLANMAAMYAVYHG--P-EGLKTIAQRVHGLAGTFALGLKKL-GTVEVQGLPFFDTVKVKCAD---AHAIASAA 492 (985)
Q Consensus 421 ~t~~~-l~a~~aa~y~~~~g--~-~Gl~~i~~~~~~~a~~l~~~L~~~-g~~~~~~~~~~~~~~i~~~~---~~~l~~~L 492 (985)
+++.. ..+..++ +. .+ . +.++++.++..++.+++.+.|++. +++++..+....-+.+..+. ..++.+.|
T Consensus 278 ~~~~~~~~~~~~~--l~-~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 354 (407)
T 2zc0_A 278 CAPAISQYIALEY--LK-RGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFLPEGADGISFANEL 354 (407)
T ss_dssp SSCHHHHHHHHHH--HH-TTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCSBSSEEEEECSTTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHH--HH-cCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCCCcEEEEEEcCCCCCHHHHHHHH
Confidence 11111 2122222 22 12 2 456677888888999999999873 33665432211224455542 78899999
Q ss_pred HHc-Cceeeee--------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 493 YKI-EMNLRVV--------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 493 ~~~-Gi~~~~~--------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.++ ||.+... .++.+|++++.. |++|+++++++|..
T Consensus 355 ~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~ 399 (407)
T 2zc0_A 355 MEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIGIKKLAK 399 (407)
T ss_dssp HHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHHHHHHHH
T ss_pred HHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHH
Confidence 988 9987542 247899999987 89999999999974
No 387
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.56 E-value=1.1e-12 Score=150.32 Aligned_cols=271 Identities=7% Similarity=-0.023 Sum_probs=179.2
Q ss_pred HHHHHHHHh----hC--CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001990 215 NFQTMIADL----TG--LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 215 e~q~~ia~L----~g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~ 288 (985)
++++.+|++ .| .++.++.+++|+|.++++++.++. ++||+|+++...|+++...++ ..|.+++.++.
T Consensus 70 ~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~---~~gd~vl~~~p~~~~~~~~~~----~~g~~~~~~~~ 142 (399)
T 1c7n_A 70 EYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFT---KPGDGVIIITPVYYPFFMAIK----NQERKIIECEL 142 (399)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC---CTTCEEEECSSCCTHHHHHHH----TTTCEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhc---CCCCEEEEcCCCcHhHHHHHH----HcCCEEEeccc
Confidence 344555555 47 556788899999988888776652 278999999999999887764 35777776653
Q ss_pred -----------hhhhc-cC-CCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEeccccccCC-----CCCCc
Q 001990 289 -----------KDIDY-KS-GDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL-----KPPGE 346 (985)
Q Consensus 289 -----------~~l~~-l~-~~t~~V~v~~p-n~~G~i~d---l~~I~~~a~~~galliV~a~~~alg~l-----~~p~~ 346 (985)
+++++ +. +++++|++.+| |.+|.+.| +++|+++|+++|+++++| +..+.... .+...
T Consensus 143 ~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~D-e~~~~~~~~g~~~~~~~~ 221 (399)
T 1c7n_A 143 LEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSD-EIHFDLIMPGYEHTVFQS 221 (399)
T ss_dssp EEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEE-CTTTTCBCTTCCCCCGGG
T ss_pred ccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEE-ccccccccCCCCcccHHH
Confidence 34555 55 78999999988 67999987 999999999999999995 23332111 11111
Q ss_pred -----ccceEEEecC-ccccccCCCCCCceEEEEEc-hhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCC
Q 001990 347 -----LGADIVVGSA-QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 347 -----~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsn 419 (985)
.+.+++++|. |.++.| |..+|+++++ +++.+.+.... . . ..-++.|
T Consensus 222 ~~~~~~~~~i~~~s~sK~~~~~----G~r~G~~~~~~~~~~~~l~~~~----------~-----------~--~~~~~~~ 274 (399)
T 1c7n_A 222 IDEQLADKTITFTAPSKTFNIA----GMGMSNIIIKNPDIRERFTKSR----------D-----------A--TSGMPFT 274 (399)
T ss_dssp SCHHHHTTEEEEECSHHHHTCG----GGCCEEEECCCHHHHHHHHHHH----------H-----------H--TTCCCCC
T ss_pred cCccccCcEEEEEeChhhcccc----chheEEEEECCHHHHHHHHHHH----------h-----------h--cccCCCC
Confidence 3567888887 887533 3346899986 45666541000 0 0 0001111
Q ss_pred ccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhc-CCCEEEcCCCCcceE-EEecC----CHHHHHHHHH
Q 001990 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQGLPFFDTV-KVKCA----DAHAIASAAY 493 (985)
Q Consensus 420 i~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~~~~~~~~~-~i~~~----~~~~l~~~L~ 493 (985)
. ....+..+++ . .+.+.++++.++..++.+++.+.|++ ++++++.... ..-+ .+..+ ...++.+.|.
T Consensus 275 ~---~~~~a~~~~l--~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ 347 (399)
T 1c7n_A 275 T---LGYKACEICY--K-ECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIE-GTYLQWIDFRALKMDHKAMEEFMI 347 (399)
T ss_dssp H---HHHHHHHHHH--H-HCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCS-BSSEEEEECGGGCCCHHHHHHHHH
T ss_pred H---HHHHHHHHHH--h-CChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCC-ceEEEEEEcccCCCCHHHHHHHHH
Confidence 1 1222222222 2 23567888889999999999999988 6337665321 1112 24443 2778999997
Q ss_pred -HcCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 494 -KIEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 494 -~~Gi~~~~~------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
++||.+... .++.+|++++.. +++++++++.|..
T Consensus 348 ~~~gi~v~~g~~~~~~~~~~iRis~~~~--~~~l~~~l~~l~~ 388 (399)
T 1c7n_A 348 HKAQIFFDEGYIFGDGGIGFERINLAAP--SSVIQESLERLNK 388 (399)
T ss_dssp HTTCCCCEEGGGGCGGGTTEEEEECCSC--HHHHHHHHHHHHH
T ss_pred HhCCEEEeCccccCCCCCCeEEEEeccC--HHHHHHHHHHHHH
Confidence 689987542 247899999864 7889999888864
No 388
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.55 E-value=4.1e-13 Score=155.31 Aligned_cols=329 Identities=12% Similarity=0.113 Sum_probs=198.4
Q ss_pred CHHHHHHHHHHHHcCCCccceecCCCCCC---CCCcHHHHHHHH-----hCCcccccc-CCChhhHhhHHHHHHHHHHHH
Q 001990 149 TESQMIEHMQKLASMNKVYKSFIGMGYYN---THVPPVILRNIM-----ENPAWYTQY-TPYQAEIAQGRLESLLNFQTM 219 (985)
Q Consensus 149 se~e~~~~~~~~~~~n~~~~~~lG~g~~~---~~~p~~v~~~i~-----~~~~~~t~~-~py~~e~sqg~l~~i~e~q~~ 219 (985)
.+..+.+++.+++++...+ + ++.|..+ ...|+.+.+.+. ..+.....| ++.+ | +.++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~i-~-l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~-----g----~~~lr~~ 78 (423)
T 3ez1_A 10 ALDLARQAYEAFKARGLNL-N-MQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVA-----G----LPSARAL 78 (423)
T ss_dssp HHHHHHHHHHHHHHHTCCE-E-SCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTT-----C----CHHHHHH
T ss_pred HHHHHHHHHHHhhcCCceE-e-cCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCC-----C----hHHHHHH
Confidence 3467788888887765433 2 3555433 124444433321 112222344 3321 1 2357789
Q ss_pred HHHhhCCCCcceeeccchHHHHH--HHHHHhhhhcCC---------CCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC-
Q 001990 220 IADLTGLPMSNASLLDEGTAAAE--AMAMCNNIQKGK---------KKTFIIASNCHPQTIDICITRADGFDIKVVVSD- 287 (985)
Q Consensus 220 ia~L~g~~~~~~sl~~~~ta~~e--a~~~a~~~~~~~---------g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~- 287 (985)
+|++++.++.++.+++|++.++. .++.++.. ..+ ||+|+++...|+.+...++. .|.+++.++
T Consensus 79 ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~-~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~ 153 (423)
T 3ez1_A 79 FAGYLDVKAENVLVWNNSSLELQGLVLTFALLH-GVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQT----LGFELLTVDM 153 (423)
T ss_dssp HHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHT-CCTTCSSCGGGGCCEEEEEESCCHHHHHHHHH----HTCEEEEEEE
T ss_pred HHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhc-cCCCccccccCCCCEEEEcCCCcHHHHHHHHH----cCCEEEeccC
Confidence 99999999889999999998876 55554421 003 69999999999998888754 377776664
Q ss_pred ------chhhhc-c--CCCEeEEEEE-cC-CCCeeeccHH---HHHHHH-HhCCcEEEEEeccccc-cCC----CCC---
Q 001990 288 ------LKDIDY-K--SGDVCGVLVQ-YP-GTEGEVLDYG---DFIKNA-HANGVKVVMATDLLAL-TIL----KPP--- 344 (985)
Q Consensus 288 ------~~~l~~-l--~~~t~~V~v~-~p-n~~G~i~dl~---~I~~~a-~~~galliV~a~~~al-g~l----~~p--- 344 (985)
+++|++ + ++++++|+++ +| |.+|.+.+.+ +|+++| +++|+++++|. ..+. ... ..+
T Consensus 154 ~~~g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De-~y~~~~~~~~~~~~~~~~ 232 (423)
T 3ez1_A 154 QSDGPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADD-AYRVHHLVEEDRAEPVNF 232 (423)
T ss_dssp ETTEECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEEC-TTSSCBCCSSSCCCCCCH
T ss_pred CCCCCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEEC-CcchhhcCCCCCCCCcch
Confidence 356666 6 6789999875 55 7899998766 888888 89999999953 3331 111 111
Q ss_pred -------CcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEeccccccccccccc
Q 001990 345 -------GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKA 416 (985)
Q Consensus 345 -------~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~a 416 (985)
+..+.+++++|. |. +.| |..+|++++++++++.+... +..
T Consensus 233 ~~~~~~~~~~~~~i~~~S~sK~-~~~----G~r~G~~~~~~~~~~~~~~~-------------------------~~~-- 280 (423)
T 3ez1_A 233 VVLARDAGYPDRAFVFASTSKI-TFA----GAGLGFVASSEDNIRWLSKY-------------------------LGA-- 280 (423)
T ss_dssp HHHHHHHTCTTSEEEEEESTTT-SCS----SSSCEEEEECHHHHHHHHHH-------------------------HHH--
T ss_pred hhhhhccCCCCeEEEEeCchhh-ccC----CcceEEEEeCHHHHHHHHHH-------------------------Hhh--
Confidence 234678889997 76 333 45679999998877664100 000
Q ss_pred CCCccchhHHHHHHHHHHHHH-cC--cchHHHHHH----HHHHHHHHHHHHHhcCC-CEEEcCCCCcceEEEecCC--HH
Q 001990 417 TSNICTAQALLANMAAMYAVY-HG--PEGLKTIAQ----RVHGLAGTFALGLKKLG-TVEVQGLPFFDTVKVKCAD--AH 486 (985)
Q Consensus 417 tsni~t~~~l~a~~aa~y~~~-~g--~~Gl~~i~~----~~~~~a~~l~~~L~~~g-~~~~~~~~~~~~~~i~~~~--~~ 486 (985)
...+++......+++ ++.. .+ .+-+++..+ +...+.++|.+.|.++| ++++..+....-+.+.+++ ..
T Consensus 281 -~~~~~~~~~~~a~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~~~~ 358 (423)
T 3ez1_A 281 -QSIGPNKVEQARHVK-FLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEPVAD 358 (423)
T ss_dssp -SCSCCCHHHHHHHHH-HHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSSCHH
T ss_pred -hccCCCHHHHHHHHH-HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCCcHH
Confidence 011111111111111 1222 11 112233333 33344555566666665 4776532111123344443 78
Q ss_pred HHHHHHHHcCceeee----------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 487 AIASAAYKIEMNLRV----------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 487 ~l~~~L~~~Gi~~~~----------~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
++.+.|.++||.+.. ..++.+|+++... ++++++++++.|..
T Consensus 359 ~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~ 410 (423)
T 3ez1_A 359 RVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEEVRTAMQVVAA 410 (423)
T ss_dssp HHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEECCSSS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcEEecCcccccCCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHH
Confidence 899999999998854 1247899999766 99999999999974
No 389
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.55 E-value=6.1e-13 Score=152.73 Aligned_cols=275 Identities=15% Similarity=0.101 Sum_probs=173.3
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhh----c-CCCCEEEEcCCCC-hhHHHHHHHhh--------cC
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ----K-GKKKTFIIASNCH-PQTIDICITRA--------DG 278 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~----~-~~g~~Vlv~~~~h-~s~~~~~~~~a--------~~ 278 (985)
..++++.+++++|.+ ++.+++|||.++++++.+++.. . .++++|++.+..| ......+.... ..
T Consensus 83 ~~~l~~~la~~~~~~--~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 160 (406)
T 4adb_A 83 VLRLAKKLIDATFAD--RVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAP 160 (406)
T ss_dssp HHHHHHHHHHHSSCS--EEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCS
T ss_pred HHHHHHHHHhhCCCC--eEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCC
Confidence 456778999999977 5888999999988877654320 0 1458888777554 44444433211 01
Q ss_pred CCeEEEEe---Cchhhhc-cCCCEeEEEEEcC-CCCee-----eccHHHHHHHHHhCCcEEEEEeccc-cccCCCCC---
Q 001990 279 FDIKVVVS---DLKDIDY-KSGDVCGVLVQYP-GTEGE-----VLDYGDFIKNAHANGVKVVMATDLL-ALTILKPP--- 344 (985)
Q Consensus 279 ~gi~v~~~---~~~~l~~-l~~~t~~V~v~~p-n~~G~-----i~dl~~I~~~a~~~galliV~a~~~-alg~l~~p--- 344 (985)
.+..+..+ |+++|++ +++++++|+++ | |.+|. .+++++|.++|+++|+++++| +.. .++....+
T Consensus 161 ~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~D-e~~~~~~~~g~~~~~ 238 (406)
T 4adb_A 161 LPADIRHAAYNDINSASALIDDSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFD-EVQTGVGRTGELYAY 238 (406)
T ss_dssp CCSSEEEECTTCHHHHHTTCSTTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEE-CTTTTTTTTSSSSHH
T ss_pred CCCCceEeCCCcHHHHHHHhcCCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEe-ccccCCCccchhHHH
Confidence 12344444 4566777 78899999998 6 56653 358999999999999999995 333 23222111
Q ss_pred --CcccceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccc
Q 001990 345 --GELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT 422 (985)
Q Consensus 345 --~~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t 422 (985)
...+.|+++. +|.|+ | |-.+|++++++++.+.+..... ..|.+. +
T Consensus 239 ~~~~~~~d~~t~-sK~~~-~----G~r~G~~~~~~~~~~~~~~~~~--------------------------~~~~~~-~ 285 (406)
T 4adb_A 239 MHYGVTPDLLTT-AKALG-G----GFPVGALLATEECARVMTVGTH--------------------------GTTYGG-N 285 (406)
T ss_dssp HHHTCCCSEEEE-CGGGG-T----TSCCEEEEECHHHHHTCCTTSS--------------------------CCSSTT-C
T ss_pred HhcCCCCCEEEe-chhhc-C----CCCeEEEEEcHHHHhhhccCCc--------------------------CCCCCC-C
Confidence 1234688754 68885 2 2346899999998877632110 011111 1
Q ss_pred hhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCC-EEEcCC--CCcceEEEecC-----CHHHHHHHHHH
Q 001990 423 AQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGT-VEVQGL--PFFDTVKVKCA-----DAHAIASAAYK 494 (985)
Q Consensus 423 ~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~-~~~~~~--~~~~~~~i~~~-----~~~~l~~~L~~ 494 (985)
+....+..++ +..+.. +++.++..++.+++++.|++++. +.+... .....+.+..+ ...++.+.|.+
T Consensus 286 ~~~~~a~~~~--l~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 360 (406)
T 4adb_A 286 PLASAVAGKV--LELINT---PEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYAGQAKQISQEAAK 360 (406)
T ss_dssp HHHHHHHHHH--HHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 1122222222 243332 56778888889999998887520 111100 01112333332 27889999999
Q ss_pred cCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 495 IEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 495 ~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+||.+....++.+|++++..+|++|+++++++|..
T Consensus 361 ~gi~v~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~ 395 (406)
T 4adb_A 361 AGVMVLIAGGNVVRFAPALNVSEEEVTTGLDRFAA 395 (406)
T ss_dssp TTEECEESSTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CCcEEeecCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 99998776678999999999999999999999974
No 390
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.55 E-value=2.3e-13 Score=157.91 Aligned_cols=281 Identities=13% Similarity=0.099 Sum_probs=174.2
Q ss_pred HHHHHHHHhh----CCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCC---------e
Q 001990 215 NFQTMIADLT----GLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFD---------I 281 (985)
Q Consensus 215 e~q~~ia~L~----g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~g---------i 281 (985)
++++.+|+++ +.++.++.+.+|+++++.++ .++ .. +||+|++++..|+++...++.. ...| .
T Consensus 102 ~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~l-~~l-~~--~gd~Vl~~~p~y~~~~~~~~~~-g~~~~~~~~~~~~~ 176 (432)
T 3ei9_A 102 PLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISRL-QVM-FG--SNVTIAVQDPSYPAYVDSSVIM-GQTGQFNTDVQKYG 176 (432)
T ss_dssp HHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-HHH-HC--TTCCEEEEESCCTHHHHHHHHH-TCSCCEETTTTEET
T ss_pred HHHHHHHHHHHccCCCCcceEEECCChHHHHHHH-HHH-cC--CCCEEEEeCCCCHHHHHHHHHc-CCcccccccccccC
Confidence 4566777775 77778898889999887763 333 22 7899999999999999888653 2222 2
Q ss_pred EEEEeCch---hhhc-c--CCCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEeccccccCCC--------C
Q 001990 282 KVVVSDLK---DIDY-K--SGDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK--------P 343 (985)
Q Consensus 282 ~v~~~~~~---~l~~-l--~~~t~~V~v~~p-n~~G~i~---dl~~I~~~a~~~galliV~a~~~alg~l~--------~ 343 (985)
+++.++.+ .+.. + .+++++|++.+| |++|.+. ++++|+++|+++|+++++| +.++..... .
T Consensus 177 ~~~~~~~~~~~~~~~~l~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~D-ea~~~~~~~~~~~~~~~~ 255 (432)
T 3ei9_A 177 NIEYMRCTPENGFFPDLSTVGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYD-SAYAMYMSDDNPRSIFEI 255 (432)
T ss_dssp TCEEEECCGGGTTSCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE-CTTGGGCCSSCCSSGGGS
T ss_pred ceEEeccCcccCCcCChhhCCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEc-cchHhhccCCCCCChhhc
Confidence 34444332 1211 2 357899999998 7899886 4778888899999999995 333321111 1
Q ss_pred CCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccc
Q 001990 344 PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT 422 (985)
Q Consensus 344 p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t 422 (985)
++..+.+|+++|. |.|+.| |-.+|+++++++++..- ... + + +.+++.......+.
T Consensus 256 ~~~~~~~i~~~S~SK~~g~~----G~r~G~~~~~~~~~~~~------------~~~-----~--~-~~~~~~~~~~~~~~ 311 (432)
T 3ei9_A 256 PGAEEVAMETASFSNYAGFT----GVRLGWTVIPKKLLYSD------------GFP-----V--A-KDFNRIICTCFNGA 311 (432)
T ss_dssp TTGGGTEEEEEESHHHHCTT----TTCCEEEECCTTCBCTT------------SCB-----H--H-HHHHHHHHHSCCCS
T ss_pred CCCCCeEEEEecchhccCCc----ccceEEEEEChHHhhcc------------hHH-----H--H-HHHHHHhccccCCC
Confidence 1234678999998 988643 34578998876652100 000 0 0 00000000011111
Q ss_pred hhHHHHHHHHH-HHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEecCC--HHHHHHHHHH-cCce
Q 001990 423 AQALLANMAAM-YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKCAD--AHAIASAAYK-IEMN 498 (985)
Q Consensus 423 ~~~l~a~~aa~-y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~--~~~l~~~L~~-~Gi~ 498 (985)
..+ +..++. .+...+.+.++++.++..++.+++++.|+++| +++.......-+.+.+++ ..++.+.|.+ +||.
T Consensus 312 -~~~-~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~ 388 (432)
T 3ei9_A 312 -SNI-SQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLG-YDVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVV 388 (432)
T ss_dssp -CHH-HHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEECSSSSEEEEECTTSCHHHHHHHHHHHHCEE
T ss_pred -CHH-HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCC-ceecCCCcceEEEEECCCCCHHHHHHHHHHHCCEE
Confidence 111 222222 01111224467888889999999999999986 777632111124455554 7788888776 4998
Q ss_pred eeee------cCCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001990 499 LRVV------DSNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 499 ~~~~------~~~~lris~~~~~t~edid~ll~~l~~~ 530 (985)
+... .++.+|+++ .++++++++.++.|+..
T Consensus 389 v~~g~~f~~~~~~~iRis~--~~~~e~l~~~l~rl~~~ 424 (432)
T 3ei9_A 389 TTPGSGFGPGGEGFVRVSA--FGHRENILEACRRFKQL 424 (432)
T ss_dssp CEEGGGGCGGGTTEEEEEC--CSCHHHHHHHHHHHHHH
T ss_pred EeCchHhCCCCCCEEEEEe--cCCHHHHHHHHHHHHHH
Confidence 7542 258899997 56999999999999753
No 391
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.54 E-value=2.9e-13 Score=156.84 Aligned_cols=286 Identities=14% Similarity=0.129 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHhC-CCccceecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcC-CCCCCcHHHHH------------
Q 001990 633 MFNNLGEWLCTITG-FDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPV-SAHGTNPATAA------------ 698 (985)
Q Consensus 633 ~~~el~~~la~l~G-~~~~~~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~-~~Hg~~~~~~~------------ 698 (985)
...+++++++++++ .+ ..++.++|++++++++.++|.+. ++++||+.+ .+|+.......
T Consensus 93 ~~~~l~~~l~~~~~~~~-~v~~~~~g~ea~~~al~~ar~~~------~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p 165 (424)
T 2e7u_A 93 LEVALAKKVKRAYPFVD-LVRFVNSGTEATMSALRLARGYT------GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVP 165 (424)
T ss_dssp HHHHHHHHHHHHCTTCC-EEEEESSHHHHHHHHHHHHHHHH------CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEE
T ss_pred HHHHHHHHHHHhCCCCC-EEEEeCCHHHHHHHHHHHHHHhh------CCCEEEEECCCcCCCcHHHHHhcCCcccccCCC
Confidence 46678899999984 33 34677889988877777655542 345666644 66765443221
Q ss_pred -hcCc------EEEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcCC--CccccccC----HHHHHHHHHHcCCEEEE
Q 001990 699 -MCGM------KIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPS--THGVYEEG----IDEICKIIHDNGGQVYM 765 (985)
Q Consensus 699 -~~G~------~v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~pn--~~G~i~~d----i~eI~~la~~~g~lliV 765 (985)
..|+ ++..+|. .|+++|+++++++++++++|++ +|+ .+|.+. + +++|.++ ++||+++|+
T Consensus 166 ~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~-ep~~~~~G~~~-~~~~~l~~l~~l-~~~g~~lI~ 237 (424)
T 2e7u_A 166 SSAGVPEEYAKLTLVLEY-----NDPEGLREVLKRRGEEIAAIIF-EPVVGNAGVLV-PTEDFLKALHEA-KAYGVLLIA 237 (424)
T ss_dssp SSTTCCHHHHTTEEEECT-----TCHHHHHHHHHHHGGGEEEEEE-CSSBCTTSCBC-CCHHHHHHHHHG-GGGTCEEEE
T ss_pred CCCCCCCccCCceEeCCC-----CCHHHHHHHHHhCCCCEEEEEE-eCCCCCCCCcC-CCHHHHHHHHHH-HHcCCEEEE
Confidence 1232 3555554 3899999999743345666655 453 378776 5 9999999 999999999
Q ss_pred EccccccccCCCCCC---c--CCCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccccCCCCCCCCCCCCCC
Q 001990 766 DGANMNAQVGLTSPG---Y--IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPEKSQPLG 840 (985)
Q Consensus 766 D~a~~~~~~g~~~~g---~--~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g~~~~~~~~~~~~~t~ 840 (985)
|++|. ++ .....+ . ..+|++++ +|+|+ +|.++|++++++++++.+... +.. ...+
T Consensus 238 DEv~~-g~-~~g~~~~~~~~~~~~di~s~--sK~l~-----~G~~~G~~~~~~~~~~~~~~~--~~~-------~~~~-- 297 (424)
T 2e7u_A 238 DEVMT-GF-RLAFGGATELLGLKPDLVTL--GKILG-----GGLPAAAYAGRREIMEKVAPL--GPV-------YQAG-- 297 (424)
T ss_dssp ECTTT-TT-TSSTTHHHHHHTCCCSEEEE--CGGGG-----TTSSCEEEEECHHHHTTBTTT--SSB-------CCCC--
T ss_pred ecCcc-cc-ccchhHHHHHhCCCcchhhh--hhhhh-----CCcceEEEEEcHHHHhhhccc--CCc-------ccCC--
Confidence 99985 32 111111 1 23688754 59884 356689999998877655321 000 0001
Q ss_pred CcccccchhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcc---CCe--eEcCCCCceeEEEEEEecCcc--
Q 001990 841 TIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKH---YPI--LFRGVNGTVAHEFIVDLRGLK-- 913 (985)
Q Consensus 841 ~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~~~~a~~l~~~L~~~---~~i--~~~g~~~~~~~~~vv~~~~~~-- 913 (985)
+.+ +++..++++.+.+..+.. ..+..++..++.++++++|++. +.+ ...+. +. .+.+++....
T Consensus 298 t~~----~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~-g~---~~~i~~~~~~~~ 367 (424)
T 2e7u_A 298 TLS----GNPLAMAAGLATLELLEE--NPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRV-GS---MITVFFTEGPVV 367 (424)
T ss_dssp TTC----SCHHHHHHHHHHHHHHHH--CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEE-TT---EEEEESSSSCCC
T ss_pred CCC----CCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEee-ce---EEEEEEeCCCCc
Confidence 111 233344445556655533 1234456677778888888652 222 12221 22 2344543100
Q ss_pred ------ccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHH
Q 001990 914 ------NTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSL 971 (985)
Q Consensus 914 ------~~~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i 971 (985)
...+....++.+.|.++||.+..... ..++ ++..+|++|++ +++++|+++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~--~~~~~t~~~i~---~~l~~l~~~ 423 (424)
T 2e7u_A 368 TFQDARRTDTELFKRFFHGLLDRGIYWPPSNF---EAAF--LSVAHREEDVE---KTLEALRKA 423 (424)
T ss_dssp SHHHHTTSCHHHHHHHHHHHHTTTEECCSSSS---SCEE--CCTTCCHHHHH---HHHHHHHHH
T ss_pred chhhhcccCHHHHHHHHHHHHHCCeEEeccCC---CceE--eeccCCHHHHH---HHHHHHHHh
Confidence 00001245788999999999864332 2344 55779999999 999999865
No 392
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.54 E-value=1.7e-13 Score=158.75 Aligned_cols=270 Identities=13% Similarity=0.063 Sum_probs=178.0
Q ss_pred HHHHHHHhh----C---CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001990 216 FQTMIADLT----G---LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 216 ~q~~ia~L~----g---~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~ 288 (985)
+++.+|+++ | .++.++.+++|+|.++++++.++. ++||+|+++...|+++...++ ..|.+++.++.
T Consensus 90 lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~---~~gd~Vl~~~p~y~~~~~~~~----~~g~~~~~v~~ 162 (425)
T 1vp4_A 90 LKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFL---DDESYCVLDDPAYLGAINAFR----QYLANFVVVPL 162 (425)
T ss_dssp HHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHC---CTTCEEEEEESCCHHHHHHHH----TTTCEEEEEEE
T ss_pred HHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhC---CCCCEEEEeCCCcHHHHHHHH----HcCCEEEEecc
Confidence 455666666 8 556788888999988888776652 278999999999999887764 35777776643
Q ss_pred -------hhhhc-cCC--------CEeEEE-EEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEeccccccCC-CC-C-
Q 001990 289 -------KDIDY-KSG--------DVCGVL-VQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL-KP-P- 344 (985)
Q Consensus 289 -------~~l~~-l~~--------~t~~V~-v~~p-n~~G~i~d---l~~I~~~a~~~galliV~a~~~alg~l-~~-p- 344 (985)
+++++ +++ ++++|+ +.+| |.+|.+.+ +++|+++|+++|+++++| +..+.... .. +
T Consensus 163 ~~~~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~D-e~~~~~~~~g~~~~ 241 (425)
T 1vp4_A 163 EDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVED-DPYGALRYEGETVD 241 (425)
T ss_dssp ETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE-CSSTTCBCSSCCCC
T ss_pred CCCCCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEE-CCCccccCCCCCCc
Confidence 45655 543 789885 5677 67998865 678999999999999995 33332221 11 1
Q ss_pred -----CcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCC
Q 001990 345 -----GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATS 418 (985)
Q Consensus 345 -----~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~ats 418 (985)
...+.+++++|. |.|+ | |-.+|++++++++++.+... +.. .
T Consensus 242 ~~~~~~~~~~~i~~~s~sK~~~-~----G~r~G~~~~~~~~~~~l~~~-------------------------~~~---~ 288 (425)
T 1vp4_A 242 PIFKIGGPERVVLLNTFSKVLA-P----GLRIGMVAGSKEFIRKIVQA-------------------------KQS---A 288 (425)
T ss_dssp CHHHHHCTTTEEEEEESTTTTC-G----GGCEEEEECCHHHHHHHHHH-------------------------HHH---H
T ss_pred CHHHhCCCCCEEEEeccccccc-c----ccceEEEeeCHHHHHHHHHH-------------------------hhh---h
Confidence 123578888887 8764 3 22369999998877654100 000 0
Q ss_pred Cccchh-HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHHHHHHHhcC-C---CEEEcCCCCcceEEEecCC---HHHHH
Q 001990 419 NICTAQ-ALLANMAAMYAVYHG-PEGLKTIAQRVHGLAGTFALGLKKL-G---TVEVQGLPFFDTVKVKCAD---AHAIA 489 (985)
Q Consensus 419 ni~t~~-~l~a~~aa~y~~~~g-~~Gl~~i~~~~~~~a~~l~~~L~~~-g---~~~~~~~~~~~~~~i~~~~---~~~l~ 489 (985)
..+++. ...+..++ +.... .+.++++.++..++.+++.+.|++. + |+++..+....-+.+..+. ..++.
T Consensus 289 ~~~~~~~~~~a~~~~--l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~l~ 366 (425)
T 1vp4_A 289 DLCSPAITHRLAARY--LERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGFDTWEMF 366 (425)
T ss_dssp HSSCCHHHHHHHHHH--HHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTCCTTTTH
T ss_pred cCCCCHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcCCCCCHHHHH
Confidence 011111 22222222 22211 3456778888889999999999875 2 3777532211224455542 66788
Q ss_pred HHHHHcCceeeee--------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 490 SAAYKIEMNLRVV--------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 490 ~~L~~~Gi~~~~~--------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+.|.++||.+... .++.+|++++.. +++|++++++.|..
T Consensus 367 ~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~e~i~~~l~~l~~ 413 (425)
T 1vp4_A 367 EYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLP-PDEKIVEGIKRLRE 413 (425)
T ss_dssp HHHHHHTEECEEGGGGCTTCCCCSEEEEECSSS-CHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEECchhhcCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHH
Confidence 9999889987542 247899999875 89999999999974
No 393
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.53 E-value=1.4e-12 Score=149.03 Aligned_cols=270 Identities=13% Similarity=0.088 Sum_probs=174.4
Q ss_pred HHHHHHHh----hC--CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-
Q 001990 216 FQTMIADL----TG--LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL- 288 (985)
Q Consensus 216 ~q~~ia~L----~g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~- 288 (985)
+++.+|++ .| .++.++.+++|+|.++++++.++. ++||+|+++...|+++...++. .|.+++.++.
T Consensus 69 lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~---~~gd~vl~~~p~y~~~~~~~~~----~g~~~~~v~~~ 141 (390)
T 1d2f_A 69 FLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS---ETGEGVVIHTPAYDAFYKAIEG----NQRTVMPVALE 141 (390)
T ss_dssp HHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS---CTTCEEEEEESCCHHHHHHHHH----TTCEEEEEECE
T ss_pred HHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhc---CCCCEEEEcCCCcHHHHHHHHH----CCCEEEEeecc
Confidence 44455554 46 566788889999988888777652 2789999999999998887753 4667666543
Q ss_pred ----------hhhhc-cCC-CEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEeccccccCC-----CCCCcc
Q 001990 289 ----------KDIDY-KSG-DVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL-----KPPGEL 347 (985)
Q Consensus 289 ----------~~l~~-l~~-~t~~V~v~~p-n~~G~i~d---l~~I~~~a~~~galliV~a~~~alg~l-----~~p~~~ 347 (985)
+++++ +.+ ++++|++++| |++|.+.| +++|+++|+++|+++++| +..+.... .+...+
T Consensus 142 ~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D-e~~~~~~~~g~~~~~~~~~ 220 (390)
T 1d2f_A 142 KQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISD-EIHMDMVWGEQPHIPWSNV 220 (390)
T ss_dssp ECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEE-CTTTTCBCSSSCCCCGGGT
T ss_pred cCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEE-ccccccccCCCCCcCHHHc
Confidence 34555 554 7999998888 67999876 899999999999999995 33332211 111123
Q ss_pred c---ceEEEecC-ccccccCCCCCCceEEEEEc-hhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccc
Q 001990 348 G---ADIVVGSA-QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT 422 (985)
Q Consensus 348 G---aDi~v~s~-k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t 422 (985)
+ .|+ ++|. |.|+.| |..+|+++++ +++.+.+..... | ...-++.|.
T Consensus 221 ~~~~~d~-~~s~sK~~~~~----G~r~G~~~~~~~~~~~~~~~~~~-------~---------------~~~~~~~~~-- 271 (390)
T 1d2f_A 221 ARGDWAL-LTSGSKSFNIP----ALTGAYGIIENSSSRDAYLSALK-------G---------------RDGLSSPSV-- 271 (390)
T ss_dssp CCSSEEE-EECSHHHHTCG----GGCCEEEEECSHHHHHHHHHHHH-------T---------------TSCCCSCCH--
T ss_pred chhhHhh-ccCccHhhccc----ChhheEEEECCHHHHHHHHHHHh-------h---------------hcccCCCCH--
Confidence 2 277 8887 887532 2346899885 566654410000 0 000011111
Q ss_pred hhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhc-CCCEEEcCCCCcceE-EEecC----CHHHHHHHHH-Hc
Q 001990 423 AQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQGLPFFDTV-KVKCA----DAHAIASAAY-KI 495 (985)
Q Consensus 423 ~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~~~~~~~~~-~i~~~----~~~~l~~~L~-~~ 495 (985)
....+..+++ . .+.+.++++.++..++.+++.+.|++ ++++++.... ..-+ .+.++ +..++.+.|. ++
T Consensus 272 -~~~~a~~~~l--~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~ 346 (390)
T 1d2f_A 272 -LALTAHIAAY--Q-QGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQ-STYLAWLDLRPLNIDDNALQKALIEQE 346 (390)
T ss_dssp -HHHHHHHHHH--H-HCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCS-BCSEEEEECGGGCCCHHHHHHHHHHTT
T ss_pred -HHHHHHHHHH--h-cCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecCC-ccEEEEEEccccCCCHHHHHHHHHHHc
Confidence 1222222222 2 23456788888899999999999988 6337655321 1112 24443 2778999998 57
Q ss_pred Cceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 496 EMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 496 Gi~~~~~------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
||.+... .++.+|++++. +++++++.++.|..
T Consensus 347 gi~v~~g~~f~~~~~~~~Ris~~~--~~~~l~~~l~~l~~ 384 (390)
T 1d2f_A 347 KVAIMPGYTYGEEGRGFVRLNAGC--PRSKLEKGVAGLIN 384 (390)
T ss_dssp CEECEEGGGGCGGGTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred CEEeeCccccCCCCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 9987542 24789999996 57889988888863
No 394
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.53 E-value=6e-13 Score=155.48 Aligned_cols=271 Identities=13% Similarity=0.081 Sum_probs=179.3
Q ss_pred HHHHHHHHhh----CC-CCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-
Q 001990 215 NFQTMIADLT----GL-PMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL- 288 (985)
Q Consensus 215 e~q~~ia~L~----g~-~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~- 288 (985)
++++.+|+++ |. ++.++.++.|+|.+++.++.++. . +||+|++++..|+.+...++ ..|.+++.++.
T Consensus 122 ~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~-~--~Gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~~ 194 (448)
T 3aow_A 122 PLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFL-N--PGDIVVVEAPTYLAALQAFN----FYEPQYIQIPLD 194 (448)
T ss_dssp HHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHC-C--TTCEEEEEESCCHHHHHHHH----TTCCEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHc-C--CCCEEEEeCCChHHHHHHHH----HcCCEEEEeccC
Confidence 3556777777 98 66788899999988888776652 3 78999999999999888764 35777777643
Q ss_pred ------hhhhc-cC----C--CEeEEE-EEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEeccccccCC-----CCC-
Q 001990 289 ------KDIDY-KS----G--DVCGVL-VQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL-----KPP- 344 (985)
Q Consensus 289 ------~~l~~-l~----~--~t~~V~-v~~p-n~~G~i~d---l~~I~~~a~~~galliV~a~~~alg~l-----~~p- 344 (985)
++|++ ++ + ++++|+ +.+| |.+|.+.+ +++|.++|+++|+++++| ++.+.... .+.
T Consensus 195 ~~g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~D-e~y~~~~~~g~~~~~~~ 273 (448)
T 3aow_A 195 DEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVED-DPYGELRYSGNPEKKIK 273 (448)
T ss_dssp TTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE-CSCTTCBCSSCCCCCTG
T ss_pred CCCCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEE-CCCccccCCCCCCcCHH
Confidence 45665 54 4 799885 4666 78998875 679999999999999995 33333221 111
Q ss_pred --CcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCcc
Q 001990 345 --GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNIC 421 (985)
Q Consensus 345 --~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~ 421 (985)
...|.+++++|. |.|+ | |--+|++++++++++.+... +.. ...|
T Consensus 274 ~~~~~~~vi~~~S~SK~~~-~----GlriG~v~~~~~l~~~l~~~--------------------------~~~--~~~~ 320 (448)
T 3aow_A 274 ALDNEGRVIYLGTFSKILA-P----GFRIGWMVGDPGIIRKMEIA--------------------------KQS--TDLC 320 (448)
T ss_dssp GGCTTSCEEEEEESTTTTC-G----GGCCEEEEECHHHHHHHHHH--------------------------HHH--HHSS
T ss_pred hcCCCCCEEEEccchhhcc-c----cccEEEEEeCHHHHHHHHHH--------------------------HHH--hcCC
Confidence 123567888887 8764 3 11269999998887665100 000 0112
Q ss_pred chhHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHHHHHHHhcC-C-CEEEcCCCCcceEEEecCC---HHHHHHHHHH
Q 001990 422 TAQALLANMAAMYAVYHG--PEGLKTIAQRVHGLAGTFALGLKKL-G-TVEVQGLPFFDTVKVKCAD---AHAIASAAYK 494 (985)
Q Consensus 422 t~~~l~a~~aa~y~~~~g--~~Gl~~i~~~~~~~a~~l~~~L~~~-g-~~~~~~~~~~~~~~i~~~~---~~~l~~~L~~ 494 (985)
++..... ++..++. .+ .+.++++.++..++.+++.+.|++. + |+++..+....-+.+.++. ..++.++|.+
T Consensus 321 ~~~~~q~-a~~~~L~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p~~g~~~~v~~~~~~~~~~l~~~l~~ 398 (448)
T 3aow_A 321 TNVFGQV-VAWRYVD-GGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTLPDGIDSKKMLERAIK 398 (448)
T ss_dssp CCHHHHH-HHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCCSBSSEEEEECSTTCCHHHHHHHHHH
T ss_pred CCHHHHH-HHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCCCccEEEEEEcCCCCCHHHHHHHHHH
Confidence 2122111 1111122 12 2346777778888999999999874 2 3776532211123445542 7889999999
Q ss_pred cCceeeee--------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 495 IEMNLRVV--------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 495 ~Gi~~~~~--------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+||.+... .++.+|+|++. .++++|+++++.|..
T Consensus 399 ~gV~v~pg~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~L~~ 440 (448)
T 3aow_A 399 KGVAYVPGEAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKRLAE 440 (448)
T ss_dssp TTEECEEGGGGSTTCCCCSEEEEECSS-SCTHHHHHHHHHHHH
T ss_pred CCcEEEcchhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHH
Confidence 99987531 24789999986 489999999999974
No 395
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.53 E-value=5.7e-13 Score=154.53 Aligned_cols=276 Identities=11% Similarity=0.074 Sum_probs=181.3
Q ss_pred HHHHHHHHhh-----CCCCcc---eeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcC-CCeEEEE
Q 001990 215 NFQTMIADLT-----GLPMSN---ASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADG-FDIKVVV 285 (985)
Q Consensus 215 e~q~~ia~L~-----g~~~~~---~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~-~gi~v~~ 285 (985)
++++.+|+++ +.++.+ +.+++|+|.+++.++.++. ++||+|+++...|+.+...+ +. .|.+++.
T Consensus 92 ~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~---~~gd~Vl~~~p~y~~~~~~~----~~~~g~~~~~ 164 (430)
T 2x5f_A 92 ELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFV---NQDDTILLPEHNWGNYKLVF----NTRNGANLQT 164 (430)
T ss_dssp HHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHC---CTTCEEEEESSCCTHHHHHH----TTTTCCEEEE
T ss_pred HHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHh---CCCCEEEEcCCcCccHHHHH----HHhcCCeEEE
Confidence 4567778777 887778 8888999988888776652 27899999999999887765 34 6888877
Q ss_pred eCc---------hhhhc-cCC---CEeEEEEEcC-CCCeeecc---HHHHHHHHHh-----CCcEEEEEeccccccCCC-
Q 001990 286 SDL---------KDIDY-KSG---DVCGVLVQYP-GTEGEVLD---YGDFIKNAHA-----NGVKVVMATDLLALTILK- 342 (985)
Q Consensus 286 ~~~---------~~l~~-l~~---~t~~V~v~~p-n~~G~i~d---l~~I~~~a~~-----~galliV~a~~~alg~l~- 342 (985)
++. +++++ +++ ++++|++.+| |.+|.+.+ +++|+++|++ +|+++++| +..+.....
T Consensus 165 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~D-e~~~~~~~~~ 243 (430)
T 2x5f_A 165 YPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVD-DAYYGLFYED 243 (430)
T ss_dssp ECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEE-CTTTTCBCSS
T ss_pred EeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEe-hhcccccCCc
Confidence 754 33444 444 7999999988 67999987 8999999999 99999995 333321111
Q ss_pred ---CC-C-c----ccc---eEEEecC-ccccccCCCCCCceEEEEE---chhhHhcCCCceeeeeecCCCCcceEEeccc
Q 001990 343 ---PP-G-E----LGA---DIVVGSA-QRFGVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQT 406 (985)
Q Consensus 343 ---~p-~-~----~Ga---Di~v~s~-k~lg~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~t 406 (985)
.+ . . .+. +++++|. |.|+.| |-.+|++++ ++++++.+...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----G~riG~~~~~~~~~~~~~~l~~~-------------------- 299 (430)
T 2x5f_A 244 VYTQSLFTALTNLHSNAILPIRLDGATKEFFAW----GFRVGFMTFGTSDQTTKEVLEAK-------------------- 299 (430)
T ss_dssp SCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCG----GGCCEEEEEBCCCHHHHHHHHHH--------------------
T ss_pred ccchHHHHHHhhccCCcceEEEEEecccCCCCC----CCCeEEEEEecCCHHHHHHHHHH--------------------
Confidence 11 1 1 344 6778887 877533 223699999 88877655110
Q ss_pred ccccccccccCCCccchhHHHHHHHHHHHH-Hc-CcchHHHHHHHHHHHHHHHHHHHh----cCCCEEEcCCCCcceEEE
Q 001990 407 REQHIRRDKATSNICTAQALLANMAAMYAV-YH-GPEGLKTIAQRVHGLAGTFALGLK----KLGTVEVQGLPFFDTVKV 480 (985)
Q Consensus 407 re~~~rre~atsni~t~~~l~a~~aa~y~~-~~-g~~Gl~~i~~~~~~~a~~l~~~L~----~~g~~~~~~~~~~~~~~i 480 (985)
. ....|. .+.+. +.....++.++ +. .. -.+.++++.++..++.+++.+.|+ +.| +++......--+.+
T Consensus 300 ~-~~~~~~-~~~~~-~~~~~~a~~~~--l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g-~~~~~~~~g~~~~~ 373 (430)
T 2x5f_A 300 V-KGLIRS-NISSG-PLPTQSAVKHV--LKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSH-WQAYDFNSGYFMAI 373 (430)
T ss_dssp H-HHHHHT-TTSSC-CHHHHHHHHHH--HHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTT-EEECCCCBSSEEEE
T ss_pred H-hhhhhc-ccCCC-ChHHHHHHHHH--HccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-ceeeCCCceEEEEe
Confidence 0 000111 11111 11122222222 22 10 012344588888899999999998 666 88764321111333
Q ss_pred ecCC--HHHHHHHHHH-cCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 481 KCAD--AHAIASAAYK-IEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 481 ~~~~--~~~l~~~L~~-~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
..++ ..++.++|.+ +||.+....++.+|+|++. +++++++++++.|..
T Consensus 374 ~~~~~~~~~~~~~l~~~~gi~v~~g~~~~iRis~~~-~~~e~i~~~~~~l~~ 424 (430)
T 2x5f_A 374 KVHDVDPEALRKHLIDKYSIGVIALNATDIRIAFSC-VEKDDIPHVFDSIAK 424 (430)
T ss_dssp EESSSCHHHHHHHHHHHHCEECEECSSSEEEEEGGG-SCGGGHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCEEEecCCCCeEEEEEec-CCHHHHHHHHHHHHH
Confidence 4443 7889999998 8999876446789999996 599999999999974
No 396
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.52 E-value=6.9e-12 Score=143.59 Aligned_cols=277 Identities=13% Similarity=0.123 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhh---c-CCCCEEEEcCCCC-hhHHHHHH--------HhhcC
Q 001990 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ---K-GKKKTFIIASNCH-PQTIDICI--------TRADG 278 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~---~-~~g~~Vlv~~~~h-~s~~~~~~--------~~a~~ 278 (985)
...++++.+++++|.+ .+.+++|||.++++++.+.+.. + .++++||+.+..| ......+. .....
T Consensus 79 ~~~~l~~~la~~~~~~--~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 156 (395)
T 3nx3_A 79 NIAAAAKNLAKASALE--RVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKP 156 (395)
T ss_dssp HHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCS
T ss_pred HHHHHHHHHHHhcCCC--eEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCC
Confidence 3456778999999844 5888899999988876543311 0 1578888877544 44333321 11123
Q ss_pred CCeEEEEeC---chhhhc-cCCCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecccc-ccCCCCC---C
Q 001990 279 FDIKVVVSD---LKDIDY-KSGDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLA-LTILKPP---G 345 (985)
Q Consensus 279 ~gi~v~~~~---~~~l~~-l~~~t~~V~v~~p-n~~G~i~d----l~~I~~~a~~~galliV~a~~~a-lg~l~~p---~ 345 (985)
.+.++..++ +++|++ +++++++|++..+ |..|.+.+ +++|.++|+++|+++++|. ..+ +|..... .
T Consensus 157 ~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~De-v~~~~g~~g~~~~~~ 235 (395)
T 3nx3_A 157 LISGVKFAKYNDISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADE-IQCGMGRSGKFFAYE 235 (395)
T ss_dssp CCSCEEEECTTCHHHHHTTCCTTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEEC-TTTTTTTTSSSSGGG
T ss_pred CCCCcEEeCCCCHHHHHHhccCCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEe-cccCCCcCCcchhHH
Confidence 344566654 466777 7888999988764 67888876 9999999999999999952 322 3322111 1
Q ss_pred c--ccceEEEecCccccccCCCCCCceEEEEEchhh-HhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccc
Q 001990 346 E--LGADIVVGSAQRFGVPMGYGGPHAAFLATSQEY-KRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT 422 (985)
Q Consensus 346 ~--~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~-~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t 422 (985)
. ...|+++. +|++++ |..+|++.+++++ .+.+.....+ .|.+. +
T Consensus 236 ~~~~~~d~~t~-sK~~~~-----G~~~G~~~~~~~~~~~~~~~~~~~--------------------------~~~~~-~ 282 (395)
T 3nx3_A 236 HAQILPDIMTS-AKALGC-----GLSVGAFVINQKVASNSLEAGDHG--------------------------STYGG-N 282 (395)
T ss_dssp GGTCCCSEEEE-CGGGTT-----TSCCEEEEECHHHHHHHSCTTCCS--------------------------SCBSC-C
T ss_pred hcCCCCCEEEe-cccccC-----CCceEEEEEchhhhhhhcCCcccC--------------------------CCCCC-C
Confidence 2 23576654 388852 3457899999988 7766321111 11111 1
Q ss_pred hhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhc----CCCEEEcC-CCCcceEEEecCC-HHHHHHHHHHcC
Q 001990 423 AQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK----LGTVEVQG-LPFFDTVKVKCAD-AHAIASAAYKIE 496 (985)
Q Consensus 423 ~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~----~g~~~~~~-~~~~~~~~i~~~~-~~~l~~~L~~~G 496 (985)
+.+..+..+++ ..+.. +++.++..++.+++++.|.+ ++.+.... ...+-.+.+.... +.++.+.|.++|
T Consensus 283 ~~~~~aa~aal--~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~G 357 (395)
T 3nx3_A 283 PLVCAGVNAVF--EIFKE---EKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFMQGLSLDKSVKVAKVIQKCQENA 357 (395)
T ss_dssp HHHHHHHHHHH--HHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH--HHHHh---hHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeEEEEEEEEeCCcchHHHHHHHHHHCC
Confidence 11222222222 22212 23445555666666666654 33233221 1222123332222 788999999999
Q ss_pred ceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 497 MNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 497 i~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
|.++...++.+|++++..+|++|+++++++|..
T Consensus 358 i~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~ 390 (395)
T 3nx3_A 358 LLLISCGENDLRFLPPLILQKEHIDEMSEKLRK 390 (395)
T ss_dssp EECEEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 998876678999999999999999999999973
No 397
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.51 E-value=1.5e-13 Score=156.80 Aligned_cols=278 Identities=15% Similarity=0.121 Sum_probs=179.3
Q ss_pred HHHHHHHH-HHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCch--
Q 001990 213 LLNFQTMI-ADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDLK-- 289 (985)
Q Consensus 213 i~e~q~~i-a~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~~-- 289 (985)
..++++.+ |+++| ...++.++.+||.++..++.++... +||+||++...|+++...++. .|++++++|.+
T Consensus 38 ~~~l~~~~~a~~~g-~~~~~v~~~sgt~al~~al~~l~~~--~Gd~Vi~~~~~~~~~~~~~~~----~G~~~~~v~~~~~ 110 (377)
T 3ju7_A 38 NQRFEQTIMSGFFQ-NRGAVTTVANATLGLMAAIQLKKRK--KGKYALMPSFTFPATPLAAIW----CGLEPYFIDISID 110 (377)
T ss_dssp HHHHHHHHHHHTST-TCSEEEEESCHHHHHHHHHHHHSCT--TCCEEEEESSSCTHHHHHHHH----TTCEEEEECBCTT
T ss_pred HHHHHHHHHHHHhC-CCCeEEEeCCHHHHHHHHHHHcCCC--CcCEEEECCCCcHHHHHHHHH----cCCEEEEEecCCc
Confidence 34678899 99999 2234778899998888777765333 899999999999999888753 58888887653
Q ss_pred -------hhhc-c-CCC--EeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCCCCcc---cceEEEec
Q 001990 290 -------DIDY-K-SGD--VCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPGEL---GADIVVGS 355 (985)
Q Consensus 290 -------~l~~-l-~~~--t~~V~v~~pn~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~p~~~---GaDi~v~s 355 (985)
++++ + +++ |++|++.+ ++|.+.|+++|.++|+ +|+++++|+ .+++|........ .+|+.+.|
T Consensus 111 ~~~~d~~~l~~~i~~~~~~tk~v~~~~--~~G~~~~~~~i~~la~-~~~~vi~D~-a~a~g~~~~~~~~g~~~~d~~~~S 186 (377)
T 3ju7_A 111 DWYMDKTVLWDKIEELKEEVAIVVPYA--TFGSWMNLEEYEELEK-KGVPVVVDA-APGFGLMNGGMHYGQDFSGMIIYS 186 (377)
T ss_dssp TCSBCHHHHHHHHHHHGGGEEEECCBC--GGGBCCCCHHHHHHHH-TTCCBEEEC-TTCTTCEETTEETTTTCSSEEEEE
T ss_pred cCCcCHHHHHHHHhcCCCCceEEEEEC--CCCCccCHHHHHHHHh-cCCEEEEEC-CCccCCeECCEeccCCCCcEEEEE
Confidence 4555 5 556 99888544 5899999999999999 999999953 4566543222223 26787776
Q ss_pred --C-ccccccCCCCCCceEEEEEc-hhhHhcCCC-ceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHH
Q 001990 356 --A-QRFGVPMGYGGPHAAFLATS-QEYKRMMPG-RIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANM 430 (985)
Q Consensus 356 --~-k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~-~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~ 430 (985)
. |.|+. + ..|++.++ +++.+++.. +-.|+. .. +. + .+.|. |... ..+ .
T Consensus 187 ~~~~K~l~~--g----~gG~~~~~~~~l~~~~~~~~~~g~~----~~--~~--------~--~~~g~-~~~~-~~~---~ 239 (377)
T 3ju7_A 187 FHATKPFGI--G----EGGLIYSKNEEDIQRIKRMGNFGFD----TN--RE--------C--TMMGF-NCKM-SEY---A 239 (377)
T ss_dssp CBTTSSSCC--B----SCEEEEESCHHHHHHHHHHTBTTBC----TT--SC--------B--CSSCC-BCCC-CHH---H
T ss_pred CCCCCcCCC--C----CcEEEEECCHHHHHHHHHHHhcCCC----CC--Cc--------e--eeccc-cCCC-CHH---H
Confidence 3 76652 1 33666665 444443311 011110 00 00 0 01111 1111 122 2
Q ss_pred HHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEE--cC-C--CCcc-eEEEecCC---HHHHHHHHHHcCceeee
Q 001990 431 AAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEV--QG-L--PFFD-TVKVKCAD---AHAIASAAYKIEMNLRV 501 (985)
Q Consensus 431 aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~--~~-~--~~~~-~~~i~~~~---~~~l~~~L~~~Gi~~~~ 501 (985)
|++ .....+.++++.++..++++++.+.|++++++.+ .. . .... -+.+..++ .+++.+.|.++||.++.
T Consensus 240 aa~--~~~~l~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~~~~ 317 (377)
T 3ju7_A 240 AAI--GIATMKKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEEVRNKQVIEDLKKQKIEARL 317 (377)
T ss_dssp HHH--HHHHHHTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTTSCHHHHHHHHHTTTBCCBC
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCChhhHHHHHHHHHHCCCceec
Confidence 222 1111256788888889999999999998853322 11 1 1111 23555554 78999999999996532
Q ss_pred ec-------------------------CCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001990 502 VD-------------------------SNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 502 ~~-------------------------~~~lris~~~~~t~edid~ll~~l~~~ 530 (985)
.. ...+++.++...|++|+++++++|...
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~ 371 (377)
T 3ju7_A 318 YFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQK 371 (377)
T ss_dssp TTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC-
T ss_pred ccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 10 246999999999999999999999864
No 398
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.51 E-value=2.4e-12 Score=147.79 Aligned_cols=330 Identities=14% Similarity=0.091 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHcC--CCccceecCCCCCCCCCcHHHHHHHHhC------CccccccCCChhhHhhHHHHHHHHHHHHHHH
Q 001990 151 SQMIEHMQKLASM--NKVYKSFIGMGYYNTHVPPVILRNIMEN------PAWYTQYTPYQAEIAQGRLESLLNFQTMIAD 222 (985)
Q Consensus 151 ~e~~~~~~~~~~~--n~~~~~~lG~g~~~~~~p~~v~~~i~~~------~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~ 222 (985)
.++.+.+..+..+ +..+.+ ++.|.++...|+.+.+.+.+. +.....|+|. +| ..++++.+|+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~i~-l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~-----~g----~~~lr~~la~ 86 (400)
T 3asa_A 17 ADLQKRVAQFRLENPQHTVIN-LSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPD-----FG----LPALRQKLSE 86 (400)
T ss_dssp HHHHHHHHHHHHHCTTSCCEE-CSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCCT-----TC----CHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcCCCceEe-ccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCC-----CC----CHHHHHHHHH
Confidence 4566777766543 223333 355555555666654444321 1112234331 12 2346788999
Q ss_pred h--hC-CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeE-EEEeCchh---hhc-c
Q 001990 223 L--TG-LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIK-VVVSDLKD---IDY-K 294 (985)
Q Consensus 223 L--~g-~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~-v~~~~~~~---l~~-l 294 (985)
+ .| .++.++.+++|++.+++++... +. +||+|+++...|+.+...++. .|.+ ++.++.++ +.. +
T Consensus 87 ~l~~g~~~~~~v~~~~G~~~al~~~~~~--~~--~gd~Vl~~~p~y~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~l 158 (400)
T 3asa_A 87 DFYRGFVDAKEIFISDGAKVDLFRLLSF--FG--PNQTVAIQDPSYPAYLDIARL----TGAKEIIALPCLQENAFFPEF 158 (400)
T ss_dssp TTSTTSSCGGGEEEESCHHHHHHHHHHH--HC--SSCEEEEEESCCHHHHHHHHH----TTCSEEEEEECCGGGTTCCCC
T ss_pred HHHcCCCCHHHEEEccChHHHHHHHHHH--cC--CCCEEEECCCCcHHHHHHHHH----cCCcceEecccchhcCcccCh
Confidence 8 57 6777888899999888764322 23 789999999999998877653 4666 66665431 211 2
Q ss_pred C--CCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecccc-ccC---C-CCCCcc----cceEEEecC-cc
Q 001990 295 S--GDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLA-LTI---L-KPPGEL----GADIVVGSA-QR 358 (985)
Q Consensus 295 ~--~~t~~V~v~~p-n~~G~i~d---l~~I~~~a~~~galliV~a~~~a-lg~---l-~~p~~~----GaDi~v~s~-k~ 358 (985)
. +++++|++++| |++|.+.+ +++|+++|+++|+++++|. ..+ ++. . .+...+ +.+++++|. |.
T Consensus 159 ~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 237 (400)
T 3asa_A 159 PEDTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDA-AYSTFISDPSLPKSIFEIPDARFCAIEINSFSKP 237 (400)
T ss_dssp CTTCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC-TTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGG
T ss_pred hhccCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEc-hhhhhhcCCCCCCchhhCCCCCCceEEEecchhh
Confidence 2 57899999888 68999876 6778999999999999952 333 211 1 111122 345888887 87
Q ss_pred ccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHc
Q 001990 359 FGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYH 438 (985)
Q Consensus 359 lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~ 438 (985)
|+.| |..+|++++++++.+... + .+. +-.. ++...+.+-.+.....+..++ +..
T Consensus 238 ~g~~----GlriG~~~~~~~~~~~~~---------------~--~~~-~~~~-~~~~~~~~~~~~~~~~a~~~~--l~~- 291 (400)
T 3asa_A 238 LGFA----GIRLGWTVIPQELTYADG---------------H--FVI-QDWE-RFLSTTFNGASIPAQEAGVAG--LSI- 291 (400)
T ss_dssp GTTT----TCCCEEEECCTTCBCTTS---------------C--BHH-HHHH-HHHHHHCCCCCHHHHHHHHHH--HHH-
T ss_pred cCCc----chheeEEeeChhhccchh---------------h--hHH-HHHH-HHhccCccCCChHHHHHHHHH--hCc-
Confidence 7532 334699988776532210 0 000 0000 000111000111122222222 222
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEe-cCC---HHHHHHHHHH-cCceeeee------cCCeE
Q 001990 439 GPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVK-CAD---AHAIASAAYK-IEMNLRVV------DSNTV 507 (985)
Q Consensus 439 g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~-~~~---~~~l~~~L~~-~Gi~~~~~------~~~~l 507 (985)
+ .++++.++..++.+++.+.|+++| +++.......-+.+. .+. +.++.+.|.+ +||.+... .++.+
T Consensus 292 ~--~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~i 368 (400)
T 3asa_A 292 L--PQLEAIHYYRENSDLLRKALLATG-FEVFGGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFV 368 (400)
T ss_dssp T--TTCHHHHHHHHHHHHHHHHHHHTT-CEEEECSSSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCE
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHCC-CeeeCCCCceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEE
Confidence 1 466788888899999999999886 887632211224455 442 5578887765 59987542 24789
Q ss_pred EEEeccCCCHHHHHHHHHHHhCC
Q 001990 508 TASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 508 ris~~~~~t~edid~ll~~l~~~ 530 (985)
|+|+ ++++++++++++.|...
T Consensus 369 Ris~--~~~~e~i~~~l~~l~~~ 389 (400)
T 3asa_A 369 RFSS--LGKREDILAACERLQMA 389 (400)
T ss_dssp EEEC--CSCHHHHHHHHHHHHC-
T ss_pred EEEe--eCCHHHHHHHHHHHHHH
Confidence 9994 68999999999999854
No 399
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.51 E-value=3e-14 Score=163.47 Aligned_cols=280 Identities=10% Similarity=0.048 Sum_probs=162.4
Q ss_pred HHHHHHHHHHhC---C---CccceecChHH-HHHHHHHHHHHHHHHhcCCCCCC----EEEEcCCCCCCcHHHHHhcCcE
Q 001990 635 NNLGEWLCTITG---F---DSFSLQPNAGA-AGEYAGLMVIRAYHKARGDHHRN----VCIIPVSAHGTNPATAAMCGMK 703 (985)
Q Consensus 635 ~el~~~la~l~G---~---~~~~~~~~sGa-~g~~a~l~air~~~~~~g~~~~~----~Vlv~~~~Hg~~~~~~~~~G~~ 703 (985)
.++++.+|++++ . +...+..++|+ ++.. ++++.+. .+++ +|+++++.|..+...++..|++
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~---~~~~~l~-----~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~ 142 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQ---AAVHALS-----SLARSQPVSVVAAAPFYSTYVEETTYVRSG 142 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHH---HHHHHHH-----HTSSSSSEEEEECSSCCTHHHHHHHTTCBT
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHH---HHHHHhc-----CCCCCCcceEEEcCCCchhHHHHHHHcCCe
Confidence 345556666555 2 22345555554 4443 3333322 2456 8999999888777778889999
Q ss_pred EEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHHHHcCCEEEEEccccccc-cCCCCCCc
Q 001990 704 IVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQ-VGLTSPGY 781 (985)
Q Consensus 704 v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la~~~g~lliVD~a~~~~~-~g~~~~g~ 781 (985)
++.+++|.++ ++ . +++++|++++| |++|.+. + +|++.++++++++++|+++.... ..+. ..
T Consensus 143 ~~~~~~d~~~------l~---~---~~~k~v~l~~p~NPtG~~~-~--~l~~~~~~~~~~ii~De~y~~~~~~~l~--~~ 205 (391)
T 3bwn_A 143 MYKWEGDAWG------FD---K---KGPYIELVTSPNNPDGTIR-E--TVVNRPDDDEAKVIHDFAYYWPHYTPIT--RR 205 (391)
T ss_dssp TEEEEEESTT------CC---C---CSCEEEEEESSCTTTCCCC-C--CCC-----CCCEEEEECTTCSTTTSCCC--CC
T ss_pred EEEecCCHHH------cC---C---CCCEEEEECCCCCCCchhH-H--HHHHHhhcCCCEEEEeCCCCCCCCCccc--cC
Confidence 9888876432 11 1 57889999999 5799987 3 55553344449999999985311 0111 13
Q ss_pred CCCcEEEeCCcccccccCCCCCCcceeeee-cccccCcCCCCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHH
Q 001990 782 IGADVCHLNLHKTFCIPHGGGGPGMGPIGV-KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYI 860 (985)
Q Consensus 782 ~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~-~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l 860 (985)
.+.++++.|+||+|+.| |.++|++++ ++++.+.+.... . ..+.+.+ ..++ .++..++
T Consensus 206 ~~~~i~~~S~SK~~g~~----GlRiG~~~~~~~~l~~~l~~~~-~-----------~~~~~~~--~~~q----~a~~~~l 263 (391)
T 3bwn_A 206 QDHDIMLFTFSKITGHA----GSRIGWALVKDKEVAKKMVEYI-I-----------VNSIGVS--KESQ----VRTAKIL 263 (391)
T ss_dssp BCCSEEEEEHHHHHSCG----GGCEEEEEECCHHHHHHHHHHH-H-----------HHHSSCC--HHHH----HHHHHHH
T ss_pred CCCeEEEEechhhcCCC----ccceEEEEecCHHHHHHHHHHh-c-----------ccccCCC--HHHH----HHHHHHH
Confidence 45689999999999643 677899997 666655432110 0 0001111 1111 1222333
Q ss_pred HHhc---------hhhHHHHHHHHHHHHHHHHHHHhccCCeeEcCCCCceeE-----------EEEEEecCccccCCCCH
Q 001990 861 AMMG---------SKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAH-----------EFIVDLRGLKNTAGIEP 920 (985)
Q Consensus 861 ~~lg---------~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~~g~~~~~~~-----------~~vv~~~~~~~~~g~~~ 920 (985)
..-. .+.+.+..+...++.+++.+.|++...+.+..+.+...+ .+.++++ . .
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~------~--~ 335 (391)
T 3bwn_A 264 NVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTK------E--E 335 (391)
T ss_dssp HHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEES------S--S
T ss_pred hCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCC------c--H
Confidence 3211 234556666777888899999987312322221111100 1334543 1 2
Q ss_pred HHHHHHHHHCCCccCCC-CCCC-CCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 921 EDVAKRLMDYGFHGPTM-SWPV-PGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 921 ~~l~~~L~e~Gi~~~~~-~~pv-~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
..+.+.|.++||.+... .|.. ++.+|++++ +++++++ ++++.|++++++
T Consensus 336 ~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~--~~~e~i~---~~~~~L~~~~~~ 386 (391)
T 3bwn_A 336 TDLVSELRRHKVMSRAGERCGSDKKHVRVSML--SREDVFN---VFLERLANMKLI 386 (391)
T ss_dssp CCHHHHHHHTTEECEEGGGGTCCTTEEEEESC--SCHHHHH---HHHHHHHSCC--
T ss_pred HHHHHHHHHCCEEEccCCCCCCCCCEEEEEec--CCHHHHH---HHHHHHHHHHHh
Confidence 35667788899987432 1222 578999997 4889999 999999877653
No 400
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.50 E-value=1.6e-13 Score=170.69 Aligned_cols=341 Identities=11% Similarity=0.049 Sum_probs=193.7
Q ss_pred ccccce-ecccCccccccccccccccccCCCCcchhhhcHHHHHHHHHHHHHHHhCCC--ccceecChHHHHHHHHHHHH
Q 001990 592 IPLGSC-TMKLNATTEMMPVTWPSFANIHPFAPADQAQGYQEMFNNLGEWLCTITGFD--SFSLQPNAGAAGEYAGLMVI 668 (985)
Q Consensus 592 ~~lGs~-~~~~~~~~~~~~~~~~~f~~~~p~~p~e~~~G~~~~~~el~~~la~l~G~~--~~~~~~~sGa~g~~a~l~ai 668 (985)
..+|+| .+.+..+...|...... .. +. ....+...++.++|+++++.+ ...++.+||+++++++++++
T Consensus 392 ~~lGh~~~p~i~~Ai~~Q~~~l~h---~~-~~-----~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A 462 (831)
T 4a0g_A 392 QGPDPTFQAELAREMGYTAARFGH---VM-FP-----ENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMA 462 (831)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHSS---CC-CT-----TEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHhhccc---cc-cc-----ccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHH
Confidence 467888 77776655554322111 10 00 001123458889999998743 23578899999999999988
Q ss_pred -HHHHHhcCCC--------CCCEEEE-cCCCCCCcHHHHHhcCc---------------EE-------------EEEeCC
Q 001990 669 -RAYHKARGDH--------HRNVCII-PVSAHGTNPATAAMCGM---------------KI-------------VSVGTD 710 (985)
Q Consensus 669 -r~~~~~~g~~--------~~~~Vlv-~~~~Hg~~~~~~~~~G~---------------~v-------------~~v~~~ 710 (985)
|.|...+|.. ++.+||. ..++||....++...|. .+ ..+++.
T Consensus 463 ~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p 542 (831)
T 4a0g_A 463 FRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLP 542 (831)
T ss_dssp HHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECC
T ss_pred HHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCC
Confidence 6676555531 2456765 66899988776654331 10 112221
Q ss_pred CCC---------CCC------------------HHHHHHHHHh-----cCCCeEEEEEEcC--CCccccccC---HHHHH
Q 001990 711 AKG---------NIN------------------IEELRKAAEA-----NRDNLSTLMVTYP--STHGVYEEG---IDEIC 753 (985)
Q Consensus 711 ~~g---------~iD------------------le~L~~~i~~-----~~~~t~~Vvi~~p--n~~G~i~~d---i~eI~ 753 (985)
... ..| .++|++.|++ +.+++++|+++.. +..|.+.+| +++|.
T Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~ 622 (831)
T 4a0g_A 543 ESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLV 622 (831)
T ss_dssp TTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHH
T ss_pred ccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHH
Confidence 100 012 2567777752 2356777777642 345666522 89999
Q ss_pred HHHHHcCCEEEEEccccccccCCCCCCcC--------CCcEEEeCCcccccccCCCCCCcceeeeecccccCcCCCCccc
Q 001990 754 KIIHDNGGQVYMDGANMNAQVGLTSPGYI--------GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVV 825 (985)
Q Consensus 754 ~la~~~g~lliVD~a~~~~~~g~~~~g~~--------g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lpg~~~g 825 (985)
++|++||++||+|+++. |+.+.|.+ .+|++++ .|.++ +|...+|++++++++.+.+....-.
T Consensus 623 ~lc~~~gilLI~DEV~t----GfGRtG~~fa~e~~gv~PDiitl--sK~L~----gG~~Plgav~~~~~i~~~~~~~~~~ 692 (831)
T 4a0g_A 623 NECRNRKIPVIFDEVFT----GFWRLGVETTTELLGCKPDIACF--AKLLT----GGMVPLAVTLATDAVFDSFSGDSKL 692 (831)
T ss_dssp HHHHHTTCCEEEECTTT----TTTTTSBSSTHHHHSSCCSEEEE--CGGGG----TTSSCCEEEEECHHHHHTTCSSCGG
T ss_pred HHHHHcCCeEEEEcCcc----ccccCCCchhhHhcCCCCcEEEE--ecccc----cCccCcEEEEECHHHHHHHhccccc
Confidence 99999999999999863 34444432 2688865 37763 3324578899998877665421000
Q ss_pred cCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHHHhchhhHHHHHHHH-HHH----HHHHHHHHhccCCee-EcCCCC
Q 001990 826 STGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIA-ILN----ANYMAKRLEKHYPIL-FRGVNG 899 (985)
Q Consensus 826 ~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~~lg~~gl~~~~~~~-~~~----a~~l~~~L~~~~~i~-~~g~~~ 899 (985)
...... .++.|+++.++++.+.|..+.++++.+..+.. ... .+.+.+.+.+...+. ..+. +
T Consensus 693 -----------~~~~hg-~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg~-G 759 (831)
T 4a0g_A 693 -----------KALLHG-HSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVI-G 759 (831)
T ss_dssp -----------GSCCCC-CTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEEE-T
T ss_pred -----------ccceee-cCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEeec-c
Confidence 000000 12334667777788888877555433211110 000 112333443321111 1111 1
Q ss_pred ceeEEEEEEecCcccc---CCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHHH
Q 001990 900 TVAHEFIVDLRGLKNT---AGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTKF 974 (985)
Q Consensus 900 ~~~~~~vv~~~~~~~~---~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~~ 974 (985)
.. +.+.+..-+.. ......++.+.|.++|+++.. ..+.||++++..+|++||| +++++|.+++++
T Consensus 760 l~---~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p----~g~~lrl~pp~~~t~e~id---~~~~~l~~~l~~ 827 (831)
T 4a0g_A 760 TL---FALELKADASNSGYASLYAKSLLIMLREDGIFTRP----LGNVIYLMCGPCTSPEICR---RLLTKLYKRLGE 827 (831)
T ss_dssp TE---EEEEEC---------CHHHHHHHHHHHHTTEECCC----BTTEEEEECCTTCCHHHHH---HHHHHHHHHHTT
T ss_pred cE---EEEEEecCccccccchHHHHHHHHHHHHCCcEEEe----cCCEEEEECCCCCCHHHHH---HHHHHHHHHHHH
Confidence 11 22332100000 011245788999999999853 3589999999999999999 999999887654
No 401
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.50 E-value=4.7e-13 Score=153.45 Aligned_cols=274 Identities=14% Similarity=0.127 Sum_probs=170.5
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhc----CCCCEEEEcC-CCChhHHHHHHHhhcCC----Ce--
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQK----GKKKTFIIAS-NCHPQTIDICITRADGF----DI-- 281 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~----~~g~~Vlv~~-~~h~s~~~~~~~~a~~~----gi-- 281 (985)
..++++.+++++|.+ ++.+++|||.++++++.+++... .++++||+.+ ..|+.+...++.. ... ++
T Consensus 84 ~~~l~~~la~~~g~~--~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~-g~~~~~~~~~p 160 (397)
T 2ord_A 84 QMELAELLSKNTFGG--KVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTAT-GQPKYQKPFEP 160 (397)
T ss_dssp HHHHHHHHHHTTTSC--EEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHS-BCHHHHGGGCS
T ss_pred HHHHHHHHHHhcCCC--eEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhcc-CChhhccccCC
Confidence 345678999999854 58888999988888776543100 1346777665 5566666554331 110 00
Q ss_pred ---EEEEe---Cchhhhc-cCCCEeEEEEEcC-CCCeee----ccHHHHHHHHHhCCcEEEEEecccc-ccCCCCC---C
Q 001990 282 ---KVVVS---DLKDIDY-KSGDVCGVLVQYP-GTEGEV----LDYGDFIKNAHANGVKVVMATDLLA-LTILKPP---G 345 (985)
Q Consensus 282 ---~v~~~---~~~~l~~-l~~~t~~V~v~~p-n~~G~i----~dl~~I~~~a~~~galliV~a~~~a-lg~l~~p---~ 345 (985)
.++.+ |+++|++ +++++++|++++| |.+|.+ +++++|+++|+++|+++++| +..+ ++....+ .
T Consensus 161 ~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~D-e~~~~~~~~g~~~~~~ 239 (397)
T 2ord_A 161 LVPGFEYFEFNNVEDLRRKMSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFD-EVQCGMGRTGKLFAYQ 239 (397)
T ss_dssp CCTTEEEECTTCHHHHHHHCCTTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEE-CTTTTTTTTSSSSHHH
T ss_pred CCCCeeEecCCCHHHHHHHhhcCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEE-ecccCCccCccchhhh
Confidence 14444 4466776 7889999999887 789983 68999999999999999995 3333 3211111 1
Q ss_pred ccc--ceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccch
Q 001990 346 ELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTA 423 (985)
Q Consensus 346 ~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~ 423 (985)
.+| +|+++. +|+|+. |-..|++++++++. .+.. +. ...|.+. ++
T Consensus 240 ~~~~~~d~~s~-sK~~~~-----G~r~G~~~~~~~~~-~l~~----------~~----------------~~~~~~~-~~ 285 (397)
T 2ord_A 240 KYGVVPDVLTT-AKGLGG-----GVPIGAVIVNERAN-VLEP----------GD----------------HGTTFGG-NP 285 (397)
T ss_dssp HHTCCCSEEEE-CGGGGT-----TSCCEEEEECSTTC-CCCT----------TS----------------SCCSSTT-CH
T ss_pred hhCCCCCeeee-ccccCC-----CcCeEEEEEchHhc-ccCC----------CC----------------cCCCCCC-CH
Confidence 234 787744 488862 33468888887654 4311 00 0011111 11
Q ss_pred hHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCC-CEEEcC--CCCcceEEEecCC---HHHHHHHHHHcCc
Q 001990 424 QALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG-TVEVQG--LPFFDTVKVKCAD---AHAIASAAYKIEM 497 (985)
Q Consensus 424 ~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g-~~~~~~--~~~~~~~~i~~~~---~~~l~~~L~~~Gi 497 (985)
....+..++ +..+.. +++.++..++.+++++.|++++ ++.++. .+...-+.+.+++ ..++.+.|.++||
T Consensus 286 ~~~~a~~~~--l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~~gi 360 (397)
T 2ord_A 286 LACRAGVTV--IKELTK---EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEVSNREVATKCFENKL 360 (397)
T ss_dssp HHHHHHHHH--HHHHTS---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECTTSCHHHHHHHHHHTTE
T ss_pred HHHHHHHHH--HHHHHh---CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEEEeEEEEEEECChHHHHHHHHHHHHCCC
Confidence 122222233 244433 3566777788888888887652 122110 1111223444442 7889999999999
Q ss_pred eeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 498 NLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 498 ~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.+....++.+|++++..++++|+++++++|..
T Consensus 361 ~v~~~~~~~iRis~~~~~~~e~i~~~~~~l~~ 392 (397)
T 2ord_A 361 LVVPAGNNTIRFLPPLTVEYGEIDLAVETLKK 392 (397)
T ss_dssp ECEEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEccCCCCEEEEECCcCCCHHHHHHHHHHHHH
Confidence 98765568999999999999999999999873
No 402
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.49 E-value=8.9e-13 Score=153.96 Aligned_cols=276 Identities=13% Similarity=0.109 Sum_probs=172.1
Q ss_pred HHHHHH-HHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHH-HHHHHhhcCCCeEEEEe---
Q 001990 212 SLLNFQ-TMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTI-DICITRADGFDIKVVVS--- 286 (985)
Q Consensus 212 ~i~e~q-~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~-~~~~~~a~~~gi~v~~~--- 286 (985)
.+.++. +.+++++|.+..++ ++.+||.+.++++.++. ++||+|++++..|++.. ........+.++.++.+
T Consensus 91 ~~e~~a~~~la~~~g~~~~~v-~~~sGs~a~~~a~~~~~---~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 166 (447)
T 3h7f_A 91 VVENLARDRAKALFGAEFANV-QPHSGAQANAAVLHALM---SPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVD 166 (447)
T ss_dssp HHHHHHHHHHHHHHTCSEEEC-CCSSHHHHHHHHHHHHC---CTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCceEE-EeCCHHHHHHHHHHHhc---CCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcC
Confidence 334444 89999999987433 36788888777766652 38999999998887621 11100000123343333
Q ss_pred ------Cchhhhc-c-CCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEEecccccc-----CCCCCCcccceEEE
Q 001990 287 ------DLKDIDY-K-SGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMATDLLALT-----ILKPPGELGADIVV 353 (985)
Q Consensus 287 ------~~~~l~~-l-~~~t~~V~v~~pn~~G~i~dl~~I~~~a~~~galliV~a~~~alg-----~l~~p~~~GaDi~v 353 (985)
|++++++ + ..++++|++.+|++ +...|+++|.++|+++|+++++|. .++.| ....+. .++|+++
T Consensus 167 ~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~-~~~~~l~~i~~l~~~~g~lli~De-a~~~g~~~~g~~~~~~-~~~di~~ 243 (447)
T 3h7f_A 167 PATHLIDMDAVRATALEFRPKVIIAGWSAY-PRVLDFAAFRSIADEVGAKLLVDM-AHFAGLVAAGLHPSPV-PHADVVS 243 (447)
T ss_dssp TTTCSCCHHHHHHHHHHHCCSEEEEECSSC-CSCCCHHHHHHHHHHHTCEEEEEC-TTTHHHHHTTSSCCST-TTCSEEE
T ss_pred cccCCcCHHHHHHHHHhcCCeEEEEcCCCC-CCccCHHHHHHHHHHcCCEEEEEC-CchhhhhcCCCCCCCC-CCCcEEE
Confidence 3356665 4 24577888777643 223399999999999999999952 32332 222222 3689999
Q ss_pred ecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHH
Q 001990 354 GSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAA 432 (985)
Q Consensus 354 ~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa 432 (985)
++. |+|+ ||-.|++++++++.+.+.... .+ ...++++. ....+..++
T Consensus 244 ~s~sK~l~------G~~gG~i~~~~~~~~~l~~~~---------~~--------------~~~~~~~~---~~~~a~~~a 291 (447)
T 3h7f_A 244 TTVHKTLG------GGRSGLIVGKQQYAKAINSAV---------FP--------------GQQGGPLM---HVIAGKAVA 291 (447)
T ss_dssp EESSGGGC------CCSCEEEEECGGGHHHHHHHH---------TT--------------TTCSSCCH---HHHHHHHHH
T ss_pred ecCCcCCC------CCCeEEEEECHHHHHHHhhhc---------CC--------------cccCCccH---HHHHHHHHH
Confidence 997 8764 455589998887765541000 00 00112221 223333333
Q ss_pred HHHHHcCcchHHHHHHHHHHHHHHHHHHHhcC-----CCEEEcCC-CCcceEEEecC--C--HHHHHHHHHHcCceee--
Q 001990 433 MYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL-----GTVEVQGL-PFFDTVKVKCA--D--AHAIASAAYKIEMNLR-- 500 (985)
Q Consensus 433 ~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~-----g~~~~~~~-~~~~~~~i~~~--~--~~~l~~~L~~~Gi~~~-- 500 (985)
+ .....++++++.++..++++++.+.|++. | ++++.. .....+.+.+. + ...+.+.|.++||.+.
T Consensus 292 ~--~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~ 368 (447)
T 3h7f_A 292 L--KIAATPEFADRQRRTLSGARIIADRLMAPDVAKAG-VSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRN 368 (447)
T ss_dssp H--HHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTT-CEEGGGSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC-
T ss_pred H--HHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCC-eEEecCCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecc
Confidence 3 34445578889999999999999999987 7 888642 22223444442 2 6677777878899876
Q ss_pred --ee------cCCeEEEEeccC----CCHHHHHHHHHHHhC
Q 001990 501 --VV------DSNTVTASFDET----TTLEDVDKLFIVFAG 529 (985)
Q Consensus 501 --~~------~~~~lris~~~~----~t~edid~ll~~l~~ 529 (985)
.. .++.+|+++... .+++|++++++.|..
T Consensus 369 ~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~ 409 (447)
T 3h7f_A 369 AVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIAT 409 (447)
T ss_dssp ------------CEEEEECHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHH
Confidence 22 247799988764 578999999999874
No 403
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.48 E-value=2.5e-12 Score=149.05 Aligned_cols=276 Identities=13% Similarity=0.112 Sum_probs=171.7
Q ss_pred HHHHHHHHHhhCCCCcceeeccchHHHH--HHHHHHhhh-hcC--------CCCEEEEcCCCChhHHHHHHHhhcCCCeE
Q 001990 214 LNFQTMIADLTGLPMSNASLLDEGTAAA--EAMAMCNNI-QKG--------KKKTFIIASNCHPQTIDICITRADGFDIK 282 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~--ea~~~a~~~-~~~--------~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~ 282 (985)
.++++.+|++++.++.++.+++|++.++ +.++.++.. ..+ +||+|++++..|+.+...++. .|.+
T Consensus 81 ~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~----~g~~ 156 (427)
T 3ppl_A 81 VDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITER----FGFE 156 (427)
T ss_dssp HHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHH----TTCE
T ss_pred HHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHH----cCCE
Confidence 4577899999999988999999999887 355444321 000 289999999999998888754 4777
Q ss_pred EEEeCc-------hhhhc-c-CCCEeEEEEE-cC-CCCeeeccHH---HHHHHH-HhCCcEEEEEeccccccCCC----C
Q 001990 283 VVVSDL-------KDIDY-K-SGDVCGVLVQ-YP-GTEGEVLDYG---DFIKNA-HANGVKVVMATDLLALTILK----P 343 (985)
Q Consensus 283 v~~~~~-------~~l~~-l-~~~t~~V~v~-~p-n~~G~i~dl~---~I~~~a-~~~galliV~a~~~alg~l~----~ 343 (985)
++.++. ++|++ + ++++++|+++ +| |.+|.+.+.+ +|+++| +++|+++++|. ..+...+. .
T Consensus 157 ~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De-~y~~~~~~~~~~~ 235 (427)
T 3ppl_A 157 MISVPMNEDGPDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDN-AYAVHTLTDEFPE 235 (427)
T ss_dssp EEEEEEETTEECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEEC-TTTTCBSSSCCCC
T ss_pred EEEeCCCCCCCCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEEC-CCcccccCCCCCC
Confidence 777643 45666 6 4789999876 55 7899998776 888888 99999999953 33221111 0
Q ss_pred ----------CCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEeccccccccc
Q 001990 344 ----------PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIR 412 (985)
Q Consensus 344 ----------p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~r 412 (985)
++..+.+++++|. |. +.| |-.+|++.+++++++.+....
T Consensus 236 ~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~----G~r~G~~~~~~~l~~~~~~~~------------------------- 285 (427)
T 3ppl_A 236 VIDIVGLGEAAGNPNRFWAFTSTSKI-TLA----GAGVSFFLTSAENRKWYTGHA------------------------- 285 (427)
T ss_dssp CCCHHHHHHHTTCTTSEEEEEESTTT-SCT----TSSCEEEECCHHHHHHHHHHH-------------------------
T ss_pred ccchhhhhhccCCCCcEEEEechhhc-cCc----CccEEEEEcCHHHHHHHHHHh-------------------------
Confidence 1245678999997 76 443 345799998888776541100
Q ss_pred ccccCCCccchhHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHHHH----HHHhcCCCEEEcCCCCcceEEEecCC--
Q 001990 413 RDKATSNICTAQALLANMAAMYAVYHG--PEGLKTIAQRVHGLAGTFA----LGLKKLGTVEVQGLPFFDTVKVKCAD-- 484 (985)
Q Consensus 413 re~atsni~t~~~l~a~~aa~y~~~~g--~~Gl~~i~~~~~~~a~~l~----~~L~~~g~~~~~~~~~~~~~~i~~~~-- 484 (985)
.. ...+++......++.+ +...+ .+-+++..++..++.+++. +.|.+++++++..+....-+.+++++
T Consensus 286 ~~---~~~~~~~~~q~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~ 361 (427)
T 3ppl_A 286 GI---RGIGPNKVNQLAHARY-FGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPGT 361 (427)
T ss_dssp HH---HCSCCCHHHHHHHHHH-HCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTTC
T ss_pred hc---ccCCCCHHHHHHHHHH-HhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcch
Confidence 00 0011111111111111 11000 1123334444444444444 44444433665432111124455554
Q ss_pred HHHHHHHHHHcCceeee----------ecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 485 AHAIASAAYKIEMNLRV----------VDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 ~~~l~~~L~~~Gi~~~~----------~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
..++.+.|.++||.+.. ..++.+|+|+... +++++++.++.|..
T Consensus 362 ~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~ 415 (427)
T 3ppl_A 362 ASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLP-PVEELEVAMDGVAT 415 (427)
T ss_dssp HHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCC-CHHHHHHHHHHHHH
Confidence 78899999999998754 1257899999655 99999999999874
No 404
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.48 E-value=1.1e-12 Score=149.48 Aligned_cols=156 Identities=19% Similarity=0.164 Sum_probs=112.5
Q ss_pred HHHHHHHHhhCCC-CcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe-Cchhhh
Q 001990 215 NFQTMIADLTGLP-MSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS-DLKDID 292 (985)
Q Consensus 215 e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~-~~~~l~ 292 (985)
++++.+++++|.+ +.++.++.|||.+++.++.++ +||+|++++..|+.....+. .++..|++++.+ |+++++
T Consensus 62 ~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~-----~gd~Vl~~~~~y~~~~~~~~-~~~~~g~~~~~v~d~~~l~ 135 (374)
T 2aeu_A 62 KVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL-----KPKKVIHYLPELPGHPSIER-SCKIVNAKYFESDKVGEIL 135 (374)
T ss_dssp HHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH-----CCSEEEEECSSSSCCTHHHH-HHHHTTCEEEEESCHHHHH
T ss_pred HHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC-----CCCEEEEecCCCCccHHHHH-HHHHcCcEEEEeCCHHHHH
Confidence 4556678889983 345778899998887776654 67999999987655444333 234467777766 556665
Q ss_pred ccCCCEeE-EEEEcC-CCCe-eeccHHHHHHHHHhCCcEEEEEeccccccC---C-CC-CCcccceEEEecC-ccccccC
Q 001990 293 YKSGDVCG-VLVQYP-GTEG-EVLDYGDFIKNAHANGVKVVMATDLLALTI---L-KP-PGELGADIVVGSA-QRFGVPM 363 (985)
Q Consensus 293 ~l~~~t~~-V~v~~p-n~~G-~i~dl~~I~~~a~~~galliV~a~~~alg~---l-~~-p~~~GaDi~v~s~-k~lg~P~ 363 (985)
+.++++++ |++.+| |++| .+.|+++|.++|+++|+++++|. ..+.+. . .. +..+|+|++++|. |.++
T Consensus 136 ~~~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De-~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~--- 211 (374)
T 2aeu_A 136 NKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDD-ASGARVRLLFNQPPALKLGADLVVTSTDKLME--- 211 (374)
T ss_dssp TTCCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEEC-TTHHHHHHHTTCCCHHHHTCSEEEEETTSSSS---
T ss_pred hcCCCccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEEC-CcccccccccccCCccccCCcEEEecCccccc---
Confidence 44457899 888888 5788 88999999999999999999953 333322 1 11 3457899999998 7653
Q ss_pred CCCCCceEEEEEchhhHhcC
Q 001990 364 GYGGPHAAFLATSQEYKRMM 383 (985)
Q Consensus 364 ~~GGP~~G~l~~~~~~~~~l 383 (985)
||.+|++++++++++++
T Consensus 212 ---g~~~G~~~~~~~~~~~l 228 (374)
T 2aeu_A 212 ---GPRGGLLAGKKELVDKI 228 (374)
T ss_dssp ---SCSCEEEEEEHHHHHHH
T ss_pred ---CcceEEEEECHHHHHHH
Confidence 46779999998887765
No 405
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.47 E-value=8.7e-13 Score=152.98 Aligned_cols=245 Identities=16% Similarity=0.089 Sum_probs=161.7
Q ss_pred HHHHHHHHHHhhCCCCccee-eccchHHHHHHHHHHhhhhcCCCCEEEEcC-CCChhHHHHHH------HhhcCCCeEEE
Q 001990 213 LLNFQTMIADLTGLPMSNAS-LLDEGTAAAEAMAMCNNIQKGKKKTFIIAS-NCHPQTIDICI------TRADGFDIKVV 284 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~s-l~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~-~~h~s~~~~~~------~~a~~~gi~v~ 284 (985)
..++++.+++++|.+.+.+. ++.+||.++++++.++. ++||+||+++ ..|+++...+. ..++..|++++
T Consensus 67 ~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~---~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~ 143 (431)
T 3ht4_A 67 RDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGIL---RPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYN 143 (431)
T ss_dssp HHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTC---CTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEE
T ss_pred HHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhC---CCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEE
Confidence 45577899999999875331 25688888887776542 3889999998 89998887763 23445799999
Q ss_pred EeCc--------hhhhc-cCCCEeEEEEEc----C-CCCeeeccHHHHHHHHHh--CCcEEEEEeccccccCC-CCCCcc
Q 001990 285 VSDL--------KDIDY-KSGDVCGVLVQY----P-GTEGEVLDYGDFIKNAHA--NGVKVVMATDLLALTIL-KPPGEL 347 (985)
Q Consensus 285 ~~~~--------~~l~~-l~~~t~~V~v~~----p-n~~G~i~dl~~I~~~a~~--~galliV~a~~~alg~l-~~p~~~ 347 (985)
.++. +++++ ++++|++|++++ | +.+|.+.|+++|+++||+ +|++++|| +..+.+.. ..|.++
T Consensus 144 ~v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livD-ea~~~~~~~~~~~~~ 222 (431)
T 3ht4_A 144 AVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVD-NCYGEFIEEQEPCHV 222 (431)
T ss_dssp ECCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEE-CTTCTTSSSCCGGGT
T ss_pred EeCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEe-CCChhhccCCCcccc
Confidence 8865 35666 788999999986 4 467888999999999999 99999995 34454442 456788
Q ss_pred cceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHH
Q 001990 348 GADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQAL 426 (985)
Q Consensus 348 GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l 426 (985)
|+|++++|. |.|++. ++|..|++++++++++++..+... + ......+.+... .
T Consensus 223 g~Di~~~S~sK~lgg~---~~~~GG~v~~~~~li~~l~~~~~~--------~-----------~~g~~~~~~~~~----~ 276 (431)
T 3ht4_A 223 GADLMAGSLIKNPGGG---IVKTGGYIVGKEQYVEACAYRLTS--------P-----------GIGAEAGASLYS----L 276 (431)
T ss_dssp TCSEEEEETTSGGGTT---TCSSCEEEEECHHHHHHHHHHHSC--------T-----------TTTTSCSCCCSC----S
T ss_pred CCeEEEcCccccCCCC---CCCceEEEEecHHHHHHHHHHhcc--------C-----------CcccccCccHHH----H
Confidence 999999998 888742 223339999999887765211100 0 000011111110 0
Q ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCC---Ccc-eEEEecCC---HHHHHHHHHHc
Q 001990 427 LANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP---FFD-TVKVKCAD---AHAIASAAYKI 495 (985)
Q Consensus 427 ~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~---~~~-~~~i~~~~---~~~l~~~L~~~ 495 (985)
+.+..++ +.++.+.++..+++.++++.|+++| +++.+.+ ..+ .+.|.+++ ..++.+.|.+.
T Consensus 277 ~~~~~~l-------~~~~~~~~~~~~~a~~l~~~L~~~g-~~v~p~~~~~~~~li~~i~l~~~~~~~~~~~~l~~~ 344 (431)
T 3ht4_A 277 QEMYQGF-------FLAPHVAGQALKGAIFTAAFLEKLG-MNTSPAWNAPRTDLIQSVQFDDKDRMIAFCQAIQYA 344 (431)
T ss_dssp HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHT-CCEESCTTSCCSSSCCEEECCCHHHHHHHHHHHHHT
T ss_pred HHHHhHh-------hhHHHHHHHHHHHHHHHHHHHHhCc-CEecCCCCCCCccEEEEEEeCCHHHHHHHHHHHHhc
Confidence 1111221 2345677788899999999999987 7664321 111 23444443 55667777665
No 406
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.47 E-value=2.7e-12 Score=148.16 Aligned_cols=328 Identities=13% Similarity=0.068 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHcC--CCccceecCCCCC-----CCCCcHHHHHHHHhCCc-cccccCCChhhHhhHHHHHHHHHHHHHHH
Q 001990 151 SQMIEHMQKLASM--NKVYKSFIGMGYY-----NTHVPPVILRNIMENPA-WYTQYTPYQAEIAQGRLESLLNFQTMIAD 222 (985)
Q Consensus 151 ~e~~~~~~~~~~~--n~~~~~~lG~g~~-----~~~~p~~v~~~i~~~~~-~~t~~~py~~e~sqg~l~~i~e~q~~ia~ 222 (985)
.++.+.++++..+ +.... -+|.|.| +...|+.+.+.+..... ....|+|. +|. .++++.+++
T Consensus 22 ~~~~~~~~~~~~~~g~~~~i-~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~-----~g~----~~lr~~ia~ 91 (418)
T 3rq1_A 22 FVTAGQAQADAKENGRENVV-NGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPI-----AGI----PDFLCAAEK 91 (418)
T ss_dssp HHHHHHHHHHHHHHCGGGCE-ECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCT-----TCC----HHHHHHHHH
T ss_pred HHHHHHHHhhhhhhcCCCeE-ECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCC-----CCh----HHHHHHHHH
Confidence 5555666665544 22222 3467765 55677777655443221 23355553 122 224455555
Q ss_pred hh----CCCC-cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---------
Q 001990 223 LT----GLPM-SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------- 288 (985)
Q Consensus 223 L~----g~~~-~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~--------- 288 (985)
++ +.+. .++.+++|+|.+++.++.++. . +||+|+++...|+.+...++ ..|.+++.++.
T Consensus 92 ~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~-~--~gd~Vl~~~p~~~~~~~~~~----~~g~~~~~v~~~~~~~~~d~ 164 (418)
T 3rq1_A 92 ECFGNFRPEGHIRSIATAGGTGGIHHLIHNYT-E--PGDEVLTADWYWGAYRVICS----DTGRTLVTYSLFDEHNNFNH 164 (418)
T ss_dssp HHHGGGCCSSEEEEEEESHHHHHHHHHHHHHS-C--TTCEEEEESSCCTHHHHHHH----HTTCEEEEECSBCTTSSBCH
T ss_pred HHhcccCccccccEEECCchHHHHHHHHHHhc-C--CCCEEEECCCCchhHHHHHH----HcCCEEEEEeeeCCCCCcCH
Confidence 43 4331 168888999988887776652 3 78999999999999888764 35888888764
Q ss_pred hhhhc-cCC----CEe-EEEEEcC--CCCeeeccHHHHH---HHHH------hCCcEEEEEeccc-cccC--------CC
Q 001990 289 KDIDY-KSG----DVC-GVLVQYP--GTEGEVLDYGDFI---KNAH------ANGVKVVMATDLL-ALTI--------LK 342 (985)
Q Consensus 289 ~~l~~-l~~----~t~-~V~v~~p--n~~G~i~dl~~I~---~~a~------~~galliV~a~~~-alg~--------l~ 342 (985)
+++++ +.+ +++ ++++.+| |++|.+.+.+++. ++|+ ++|+++++|. .. .++. ..
T Consensus 165 ~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De-~y~~~~~~~~~~~~~~~ 243 (418)
T 3rq1_A 165 EAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDV-AYLDYSGEKDEVRAFFN 243 (418)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEEC-TTGGGSSCHHHHHGGGG
T ss_pred HHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEec-ccccccCChHHHHHHHH
Confidence 33444 432 455 7778878 7899998755554 5555 8999999953 22 1211 00
Q ss_pred CCCcccce---EEEecC-ccccccCCCCCCceEEEEE---chhhHhcCCCceeeeeecCCCCcceEEecccccccccccc
Q 001990 343 PPGELGAD---IVVGSA-QRFGVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDK 415 (985)
Q Consensus 343 ~p~~~GaD---i~v~s~-k~lg~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~ 415 (985)
....++-| |+++|. |.|+.| |-.+|++.+ ++++++.+... + ++..+.
T Consensus 244 ~~~~~~~~~~~i~~~S~sK~~~~~----G~r~G~~~~~~~~~~~~~~~~~~--------------------~-~~~~~~- 297 (418)
T 3rq1_A 244 KFSHLPKEILTCVCYSLSKGFTMY----GQRVGAMIGISDDEEIADEFFEV--------------------N-KSTSRA- 297 (418)
T ss_dssp GGTTCCTTEEEEEEEESTTTTTCC----SSCCEEEEEEESSHHHHHHHHHH--------------------H-HHHHHH-
T ss_pred HHHhcCCCceEEEEEeCCCCCcCc----CCcceEEEEEeCCHHHHHHHHHH--------------------H-HHHHhh-
Confidence 01112233 677776 877643 234688887 77777664100 0 000000
Q ss_pred cCCCccchhHHHHHHHHHHHHHc-----CcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCC-CcceEEEecCCHHHHH
Q 001990 416 ATSNICTAQALLANMAAMYAVYH-----GPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLP-FFDTVKVKCADAHAIA 489 (985)
Q Consensus 416 atsni~t~~~l~a~~aa~y~~~~-----g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~-~~~~~~i~~~~~~~l~ 489 (985)
.+++.. ..+..++.+.+ ... -.+.++++.++..++.+++.+.|+++| +++.... .+ -+.+..++..++.
T Consensus 298 ~~~~~~-~~~~~a~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~~~~~~~~~-~~~~~~~~~~~~~ 372 (418)
T 3rq1_A 298 TWSNIC-RPAMRTMANIV--ADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVG-LPMLPYRGGF-FITIPTDSANAIC 372 (418)
T ss_dssp HTSSCC-HHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCCCCCCSSS-EEEEECTTHHHHH
T ss_pred ccCCCc-hHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCCceE-EEEcCCCCHHHHH
Confidence 011111 11111211111 100 012344666778888899999998886 7765321 11 1223444578899
Q ss_pred HHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 490 SAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 490 ~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+.|.++||.+... ++.+|+|+. ..++++++++++.|..
T Consensus 373 ~~l~~~gi~v~~g-~~~iRis~~-~~~~~~i~~~~~~l~~ 410 (418)
T 3rq1_A 373 EELKKEHIYVIAL-ANGIRIAAC-GIPKCQMTGLAEKIYN 410 (418)
T ss_dssp HHHHHTTEECEEC-SSEEEEEGG-GSCHHHHTTHHHHHHH
T ss_pred HHHHhCCEEEecC-CCCeEEEEe-cCCHHHHHHHHHHHHH
Confidence 9999999988763 578999977 5699999999999874
No 407
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.46 E-value=4.4e-12 Score=146.75 Aligned_cols=276 Identities=15% Similarity=0.107 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhh-h--c--CCCCEEEEcCC-CChhHHHHHHHhhc--------
Q 001990 212 SLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI-Q--K--GKKKTFIIASN-CHPQTIDICITRAD-------- 277 (985)
Q Consensus 212 ~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~-~--~--~~g~~Vlv~~~-~h~s~~~~~~~~a~-------- 277 (985)
...++++.+++++|.+ ++.+++|||.++++++.+++. . + .++++||+.+. -|..+...+.....
T Consensus 100 ~~~~l~~~la~~~g~~--~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~ 177 (420)
T 2pb2_A 100 PALRLGRKLIDATFAE--RVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFG 177 (420)
T ss_dssp HHHHHHHHHHHHSSCS--EEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSS
T ss_pred HHHHHHHHHHhhCCCC--eEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCC
Confidence 3456778999999854 588889999998888765432 0 0 13358887774 55555444432100
Q ss_pred CCCeEEEEe---Cchhhhc-cCCCEeEEEEEcC-CCCee----eccHHHHHHHHHhCCcEEEEEeccc-cccCCCCCC--
Q 001990 278 GFDIKVVVS---DLKDIDY-KSGDVCGVLVQYP-GTEGE----VLDYGDFIKNAHANGVKVVMATDLL-ALTILKPPG-- 345 (985)
Q Consensus 278 ~~gi~v~~~---~~~~l~~-l~~~t~~V~v~~p-n~~G~----i~dl~~I~~~a~~~galliV~a~~~-alg~l~~p~-- 345 (985)
.....+..+ |+++|++ +++++++|+++.+ |..|. ..++++|.++|+++|+++++|. .. .++....+.
T Consensus 178 p~~~~~~~~~~~d~~~le~~i~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~De-v~~g~~~~g~~~~~ 256 (420)
T 2pb2_A 178 PKPADIIHVPFNDLHAVKAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDE-VQCGMGRTGDLFAY 256 (420)
T ss_dssp SCCSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEEC-TTTTTTTTSSSSHH
T ss_pred CCCCCeEEecCCCHHHHHHHhccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEc-CCcCcccCCcHHHH
Confidence 111124444 4567777 7888999988766 45665 3589999999999999999952 32 232211111
Q ss_pred ---cccceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccc
Q 001990 346 ---ELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT 422 (985)
Q Consensus 346 ---~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t 422 (985)
....|+++. +|.|+. |-..|++++++++.+.+... ..+ .| .+.
T Consensus 257 ~~~~~~~diit~-sK~l~~-----G~~iG~~~~~~~l~~~l~~~----------~~~----------------~t--~~~ 302 (420)
T 2pb2_A 257 MHYGVTPDILTS-AKALGG-----GFPVSAMLTTQEIASAFHVG----------SHG----------------ST--YGG 302 (420)
T ss_dssp HHHTCCCSEEEE-CGGGGT-----TSCCEEEEECHHHHTTCC--------------C----------------CE--ECC
T ss_pred HhcCCCCCeEEe-cccccC-----CCceEEEEEhHHHHHhhcCC----------CcC----------------cc--cCc
Confidence 134788754 488862 22468888998887765210 000 00 111
Q ss_pred hh-HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcC--C--CEEEc-CCCCcceEEEecC---CHHHHHHHHH
Q 001990 423 AQ-ALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL--G--TVEVQ-GLPFFDTVKVKCA---DAHAIASAAY 493 (985)
Q Consensus 423 ~~-~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~--g--~~~~~-~~~~~~~~~i~~~---~~~~l~~~L~ 493 (985)
+. ...+..++ +..+.. +++.++..++.+++++.|+++ + .+... +...+-.+.+..+ ...++.+.|.
T Consensus 303 ~~~~~aa~~a~--L~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~l~ 377 (420)
T 2pb2_A 303 NPLACAVAGAA--FDIINT---PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGRARDFLYAGA 377 (420)
T ss_dssp CHHHHHHHHHH--HHHHSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECGGGTTCHHHHHHHHH
T ss_pred CHHHHHHHHHH--HHHHHh---ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecceEEEEEECCCchHHHHHHHHHHH
Confidence 11 12222222 244433 456777888889998888765 1 12211 1111212333221 2678999999
Q ss_pred HcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 494 KIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 494 ~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
++||.+....++.+|++++...|++|+++++++|..
T Consensus 378 ~~Gi~v~~~~~~~iRl~~~~~~t~eei~~~~~~l~~ 413 (420)
T 2pb2_A 378 EAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFAQ 413 (420)
T ss_dssp HTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HCCCEEEeCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 999988765568999999999999999999999974
No 408
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.46 E-value=8.5e-13 Score=157.75 Aligned_cols=130 Identities=12% Similarity=0.139 Sum_probs=94.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHh--cCcEEEEEeCCCC--CCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccc--cCHH
Q 001990 678 HHRNVCIIPVSAHGTNPATAAM--CGMKIVSVGTDAK--GNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGID 750 (985)
Q Consensus 678 ~~~~~Vlv~~~~Hg~~~~~~~~--~G~~v~~v~~~~~--g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~--~di~ 750 (985)
.++++|+++++.|..+...+.. .|++++.++.+++ +.+|+++|+++++ +++++|++++| |++|.+. ++++
T Consensus 192 ~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~v~l~~p~NPtG~~~~~~~l~ 268 (546)
T 2zy4_A 192 KAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKD---PAIKIFFCVNPSNPPSVKMDQRSLE 268 (546)
T ss_dssp CTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS---TTEEEEEEESSCSSSCBCCCHHHHH
T ss_pred CCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC---CCCeEEEEECCCCCCCccCCHHHHH
Confidence 3678999998866544444333 4689999998654 4699999998875 78999999999 5799886 2477
Q ss_pred HHHHHH--HHcCCEEEEEccccccccCCCCCCc--CCCcEEEeCCcccccccCCCCCCcceeeeeccc
Q 001990 751 EICKII--HDNGGQVYMDGANMNAQVGLTSPGY--IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH 814 (985)
Q Consensus 751 eI~~la--~~~g~lliVD~a~~~~~~g~~~~g~--~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~ 814 (985)
+|.++| +++|+++++|+++............ .+.++++.|++|+|+. .|.++|+++++++
T Consensus 269 ~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~----~GlRiG~~~~~~~ 332 (546)
T 2zy4_A 269 RVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGA----TGWRLGVVAAHQQ 332 (546)
T ss_dssp HHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTC----GGGCEEEEEEESS
T ss_pred HHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCC----CCcceEEEEECCH
Confidence 889998 7899999999998532211111111 1356888999998854 3678999999875
No 409
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.45 E-value=1e-11 Score=143.06 Aligned_cols=273 Identities=8% Similarity=0.001 Sum_probs=165.1
Q ss_pred HHHHHHHHhh------CCCCcceeeccchHHHHHHHHHHhhhhcCCCC-----EEEEc-CCCChhHHHHHHHh--hcCCC
Q 001990 215 NFQTMIADLT------GLPMSNASLLDEGTAAAEAMAMCNNIQKGKKK-----TFIIA-SNCHPQTIDICITR--ADGFD 280 (985)
Q Consensus 215 e~q~~ia~L~------g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~-----~Vlv~-~~~h~s~~~~~~~~--a~~~g 280 (985)
++++.+|+++ +.++.++.+++|+|.+++.++.++. . +|| +|+++ ...|+.+...+... ....+
T Consensus 79 ~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~-~--~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~ 155 (417)
T 3g7q_A 79 ALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFA-G--RRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSAR 155 (417)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHS-B--C----CCBEEEESSCCCHHHHHC-----CCEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHc-C--CCccCCcceEEEeCCCccccchhhccchhhhcccc
Confidence 4667777776 5677789999999988888776653 2 555 89998 77888776655321 12344
Q ss_pred eEEEEeC---------chhhhccCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEecccccc-----CC-
Q 001990 281 IKVVVSD---------LKDIDYKSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALT-----IL- 341 (985)
Q Consensus 281 i~v~~~~---------~~~l~~l~~~t~~V~v~~p-n~~G~i~d---l~~I~~~a~~~galliV~a~~~alg-----~l- 341 (985)
..+..++ +++++ +++++++|++.+| |.+|.+.+ +++|+++|+++|+++++|. ..+.. ..
T Consensus 156 ~~~~~~~~~~~~~~~d~~~l~-~~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De-~~~~~~~~~~~~~ 233 (417)
T 3g7q_A 156 PNIELLPEGQFKYHVDFEHLH-IGEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDN-AYGVPFPGIIFSE 233 (417)
T ss_dssp CEEEEEGGGEEEEECCGGGCC-CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEEC-TTCTTTTCCBCSC
T ss_pred CcccccCCcccccccCHHHhc-cccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeC-CCccccccccccc
Confidence 5555443 33444 5678999999998 78999987 8999999999999999952 33311 11
Q ss_pred CCCCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCc
Q 001990 342 KPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNI 420 (985)
Q Consensus 342 ~~p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni 420 (985)
..+...+.+++++|. | ++.| |-.+|++++++++.+.+.... +. .+.
T Consensus 234 ~~~~~~~~~i~~~s~sK-~~~~----G~r~G~~~~~~~~~~~~~~~~-------------------------~~---~~~ 280 (417)
T 3g7q_A 234 ARPLWNPNIILCMSLSK-LGLP----GSRCGIIIANDKTITAIANMN-------------------------GI---ISL 280 (417)
T ss_dssp CCCCCCTTEEEEEESGG-GTCT----TSCCEEEECCHHHHHHHHHHH-------------------------HH---HCC
T ss_pred cccCCCCCEEEEEechh-ccCC----CcceEEEEeCHHHHHHHHHhh-------------------------cc---eee
Confidence 123446788999997 6 5432 234789998888776651100 00 011
Q ss_pred cchhHHHHHHHHHHHHHcCcc-hHHH-HHHHHHHHHHHHHHHHhc----CCCEEEcCCCCcceEEEecC--C--HHHHHH
Q 001990 421 CTAQALLANMAAMYAVYHGPE-GLKT-IAQRVHGLAGTFALGLKK----LGTVEVQGLPFFDTVKVKCA--D--AHAIAS 490 (985)
Q Consensus 421 ~t~~~l~a~~aa~y~~~~g~~-Gl~~-i~~~~~~~a~~l~~~L~~----~g~~~~~~~~~~~~~~i~~~--~--~~~l~~ 490 (985)
+++......+++ ++...... -+++ +.++..++.+++++.|.+ +| +++..+....-+.+.++ + ..++.+
T Consensus 281 ~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~l~~ 358 (417)
T 3g7q_A 281 APGGMGPAMMCE-MIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEER-CLIHKPEGAIFLWLWFKDLPITTELLYQ 358 (417)
T ss_dssp CCCSHHHHHHHH-HHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTT-CEEECCCBSSEEEEECTTCSSCHHHHHH
T ss_pred CCCcHHHHHHHH-HHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-ceeeCCCcceEEEEEcCCCCCCHHHHHH
Confidence 111111111111 12211100 0112 444455566666666654 34 66653221112334443 2 788999
Q ss_pred HHHHcCceeeee----c---------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 491 AAYKIEMNLRVV----D---------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 491 ~L~~~Gi~~~~~----~---------~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.|.++||.+... . ++.+|+|++. ++++++++++.|..
T Consensus 359 ~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~ 408 (417)
T 3g7q_A 359 RLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP--EPDKIEAGVKILAE 408 (417)
T ss_dssp HHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS--CHHHHHHHHHHHHH
T ss_pred HHHHCCEEEECchhhCCCCccccccCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence 999999987542 1 3589999985 99999999999974
No 410
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.44 E-value=5.8e-12 Score=145.13 Aligned_cols=325 Identities=12% Similarity=0.089 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHcC--CCccceecCCCCC-----CCCCcHHHHHHHHhCCc-cccccCCChhhHhhHHHHHHHHHHHHHHH
Q 001990 151 SQMIEHMQKLASM--NKVYKSFIGMGYY-----NTHVPPVILRNIMENPA-WYTQYTPYQAEIAQGRLESLLNFQTMIAD 222 (985)
Q Consensus 151 ~e~~~~~~~~~~~--n~~~~~~lG~g~~-----~~~~p~~v~~~i~~~~~-~~t~~~py~~e~sqg~l~~i~e~q~~ia~ 222 (985)
.++.+..+++..+ +....+ ++.|.| +...|+.+.+.+..... ....|+|. +|.. ++++.+++
T Consensus 21 ~~~~~~~~~~~~~~g~~~~i~-l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~Y~~~-----~g~~----~lr~~la~ 90 (413)
T 3t18_A 21 FDINNKANAAIEKYGREAVIN-AALGTLLDDKGKIIALPSVYDRLDEMDRSHIASYAPI-----EGEK----DYRKIVID 90 (413)
T ss_dssp HHHHHHHHHHHHHHCGGGCEE-CCSCCCBCTTSCBCCCHHHHHHHHHSCHHHHHSCCCT-----TCCH----HHHHHHHH
T ss_pred HHHHHHHhhhhhhccccceEe-ccccCccCCCCCcCChHHHHHHHHhcCcccccCcCCC-----CCCH----HHHHHHHH
Confidence 4555666555544 222222 356655 44577777655444221 23455542 2222 23444554
Q ss_pred h----hCCC-CcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc---------
Q 001990 223 L----TGLP-MSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL--------- 288 (985)
Q Consensus 223 L----~g~~-~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~--------- 288 (985)
. .+.+ ..++.+++|+|.+++.++.++. ++||+|+++...|+.+...++. .|.+++.++.
T Consensus 91 ~~~~~~~~~~~~~i~~t~g~~~al~~~~~~~~---~~gd~Vl~~~p~~~~~~~~~~~----~g~~~~~~~~~~~~~~~d~ 163 (413)
T 3t18_A 91 TLFGPYKPEGYISAIATPGGTGAIRSAIFSYL---DEGDPLICHDYYWAPYRKICEE----FGRNFKTFEFFTDDFAFNI 163 (413)
T ss_dssp HHHGGGCCSSEEEEEEESHHHHHHHHHHHHHC---CSSCEEEEESSCCTHHHHHHHH----HTCEEEEECCBCTTSSBCH
T ss_pred HHhcccCccccCcEEEcCccHHHHHHHHHHhc---CCCCEEEECCCCcccHHHHHHH----hCCeEEEeeccCCCCCcCH
Confidence 3 3322 1268888999988888776652 3789999999999998887754 4778777764
Q ss_pred hhhhc-cCC----CEe-EEEEEcC--CCCeeeccHHHHH---HHHH------hCCcEEEEEeccccccCCCC-C------
Q 001990 289 KDIDY-KSG----DVC-GVLVQYP--GTEGEVLDYGDFI---KNAH------ANGVKVVMATDLLALTILKP-P------ 344 (985)
Q Consensus 289 ~~l~~-l~~----~t~-~V~v~~p--n~~G~i~dl~~I~---~~a~------~~galliV~a~~~alg~l~~-p------ 344 (985)
++|++ +.+ +++ ++++.+| |++|.+.+.+++. ++|+ ++|+++++|.-...++.-.. .
T Consensus 164 ~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~ 243 (413)
T 3t18_A 164 DVYKEAIDEGIRDSDRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEK 243 (413)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGG
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHH
Confidence 34444 433 566 6777877 7899998766555 5555 89999999531122221111 0
Q ss_pred -Ccccce---EEEecC-ccccccCCCCCCceEEEEE---chhhHhcCCCceeeeeecCCCCcceEEeccccccccccccc
Q 001990 345 -GELGAD---IVVGSA-QRFGVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKA 416 (985)
Q Consensus 345 -~~~GaD---i~v~s~-k~lg~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~a 416 (985)
..++-| |+++|. |.|+.| |-.+|++++ ++++++.+... + +...+ ..
T Consensus 244 ~~~~~~~~~~i~~~S~sK~~~~~----G~riG~~~~~~~~~~~~~~~~~~--------------------~-~~~~~-~~ 297 (413)
T 3t18_A 244 FSNLPRNLFVVVAFSMSKSHTAY----GLRSGAAVGISSSKEIIEEFEAS--------------------L-AHSAR-CN 297 (413)
T ss_dssp GTTCCTTEEEEEEEEHHHHTTCG----GGCCEEEEEEESCHHHHHHHHHH--------------------H-HHHHH-HH
T ss_pred HhhcCCCeeEEEEEecCccCCCc----CcCcEEEEEecCCHHHHHHHHHH--------------------H-HHhhh-cc
Confidence 112223 677786 888643 223689888 77777665100 0 00000 00
Q ss_pred CCCccchhHHHHHHHHHHHHHcC-------cchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCC--CCcceEEEecCCHHH
Q 001990 417 TSNICTAQALLANMAAMYAVYHG-------PEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL--PFFDTVKVKCADAHA 487 (985)
Q Consensus 417 tsni~t~~~l~a~~aa~y~~~~g-------~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~~~~~i~~~~~~~ 487 (985)
+++. +.+ +..++. ..+. .+.++++.++..++.+++.+.|+++| +++... .++ +.+......+
T Consensus 298 ~~~~---~~~-~~~a~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-~~~~~~~~~~~--~~~~~~~~~~ 368 (413)
T 3t18_A 298 WSNG---THA-AQNILI--ELERAENKKIYEQELVDLRNMLKSRADVFVTAAKENK-LTMIPYFGGFF--TFIPTDKAFD 368 (413)
T ss_dssp TSSC---CHH-HHHHHH--HTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCBCCCSSSC--EEEECSCHHH
T ss_pred ccCC---ChH-HHHHHH--HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCccCCCceEE--EEeCCCCHHH
Confidence 1111 111 111211 1111 12345667778888999999999886 776532 222 2233334788
Q ss_pred HHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001990 488 IASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 488 l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~ 528 (985)
+.+.|.++||.+... ++.+|++++..++++.+++|.+++.
T Consensus 369 ~~~~l~~~gv~v~~g-~~~iRis~~~~~~~~~l~~l~~~l~ 408 (413)
T 3t18_A 369 IVKDLEKENIFTIPS-AKGIRVAICGVGEEKIPKLVQRLAF 408 (413)
T ss_dssp HHHHHHHTTEECEEC-SSEEEECTTTSCGGGHHHHHHHHHH
T ss_pred HHHHHHhCCEEEecC-CCceEEEEeeCCHHHHHHHHHHHHH
Confidence 999999999998763 6789999986666665666666654
No 411
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.43 E-value=9.2e-12 Score=144.98 Aligned_cols=274 Identities=14% Similarity=0.118 Sum_probs=169.1
Q ss_pred HHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhh-h--h-c--CCC-CEEEEcC-CCChhHHHHHHHhh-----cCC-
Q 001990 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-I--Q-K--GKK-KTFIIAS-NCHPQTIDICITRA-----DGF- 279 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~--~-~--~~g-~~Vlv~~-~~h~s~~~~~~~~a-----~~~- 279 (985)
.++++.+++++|.+ .+.++++|+.++++++.+.+ + + + .+| ++||+.+ .-|..+...+.... ..+
T Consensus 121 ~~l~~~la~~~g~~--~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~ 198 (439)
T 2oat_A 121 GEYEEYITKLFNYH--KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFG 198 (439)
T ss_dssp HHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSC
T ss_pred HHHHHHHHHhcCCC--EEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCC
Confidence 45667889999854 47788999999888775543 1 1 0 134 7888777 55666655543110 001
Q ss_pred --CeEEEEe---Cchhhhc-c-CCCEeEEEEEcC-CCCeeec----cHHHHHHHHHhCCcEEEEEeccc-cccCCCCC--
Q 001990 280 --DIKVVVS---DLKDIDY-K-SGDVCGVLVQYP-GTEGEVL----DYGDFIKNAHANGVKVVMATDLL-ALTILKPP-- 344 (985)
Q Consensus 280 --gi~v~~~---~~~~l~~-l-~~~t~~V~v~~p-n~~G~i~----dl~~I~~~a~~~galliV~a~~~-alg~l~~p-- 344 (985)
...+..+ |+++|++ + ++++++|+++.. +.+|.+. ++++|.++|+++|+++++| +.. .+|-....
T Consensus 199 p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~D-Ev~~g~g~~g~~~~ 277 (439)
T 2oat_A 199 PFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIAD-EIQTGLARTGRWLA 277 (439)
T ss_dssp SCCTTEEEECSSCHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEE-CTTTTTTTTSSSSG
T ss_pred CCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe-ccccCCccCCcchh
Confidence 1234444 4567776 7 578888877643 4579776 8999999999999999995 232 23311111
Q ss_pred -Ccc--cceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCcc
Q 001990 345 -GEL--GADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNIC 421 (985)
Q Consensus 345 -~~~--GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~ 421 (985)
..+ ..|++. -+|.|++ |.-.+|++++++++.+.+... .. ..|. +
T Consensus 278 ~~~~~~~~Di~t-~sK~l~~----G~~~~G~v~~~~~~~~~l~~~----------~~----------------~~t~--~ 324 (439)
T 2oat_A 278 VDYENVRPDIVL-LGKALSG----GLYPVSAVLCDDDIMLTIKPG----------EH----------------GSTY--G 324 (439)
T ss_dssp GGGGTCCCSEEE-ECGGGGT----TSSCCEEEEECHHHHTTSCTT----------SS----------------CCSS--T
T ss_pred HHHhCCCCcEEE-ecccccC----CCCCeEEEEECHHHHhccCCC----------Cc----------------ccCC--C
Confidence 122 368763 3488752 201268899999887766210 00 0111 1
Q ss_pred chhH-HHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEc----CCCCcceEEEecC--C-HHHHHHHHH
Q 001990 422 TAQA-LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQ----GLPFFDTVKVKCA--D-AHAIASAAY 493 (985)
Q Consensus 422 t~~~-l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~----~~~~~~~~~i~~~--~-~~~l~~~L~ 493 (985)
.+.. ..+..+++ ..+..+ ++.++..++.+++++.|++++ +.++ +...+-.+.+... . +.++.+.|.
T Consensus 325 ~~~~~~aaa~aal--~~~~~~---~~~~~~~~~~~~l~~~L~~l~-~~~~~~~~~~g~~~~v~l~~~~~~~~~~l~~~l~ 398 (439)
T 2oat_A 325 GNPLGCRVAIAAL--EVLEEE---NLAENADKLGIILRNELMKLP-SDVVTAVRGKGLLNAIVIKETKDWDAWKVCLRLR 398 (439)
T ss_dssp TCHHHHHHHHHHH--HHHHHT---THHHHHHHHHHHHHHHHTTSC-TTTEEEEEEETTEEEEEECCCSSCCHHHHHHHHH
T ss_pred cCHHHHHHHHHHH--HHHhhh---hHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeeeeEEEEEEecCccHHHHHHHHHHH
Confidence 1111 22222222 333222 456778889999999999874 3221 1111212333222 2 778999999
Q ss_pred HcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 494 KIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 494 ~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
++||.+....++.+|++++..+|++|+++++++|..
T Consensus 399 ~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~ 434 (439)
T 2oat_A 399 DNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINK 434 (439)
T ss_dssp HTTEECCBSSSSEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HCCeEEecCCCCEEEEECccCCCHHHHHHHHHHHHH
Confidence 999998765568999999999999999999999963
No 412
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.43 E-value=1.5e-11 Score=142.49 Aligned_cols=271 Identities=12% Similarity=0.043 Sum_probs=171.6
Q ss_pred HHHHHHHHhhCCCC---------cceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001990 215 NFQTMIADLTGLPM---------SNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 215 e~q~~ia~L~g~~~---------~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~ 285 (985)
.+.+.+++..|.+. .++.++.|++.+++.++.++. . +||+|++++..|+.+...++ ..|.+++.
T Consensus 86 ~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~-~--~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~ 158 (425)
T 2r2n_A 86 WLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII-N--PGDNVLLDEPAYSGTLQSLH----PLGCNIIN 158 (425)
T ss_dssp HHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC-C--TTCEEEEESSCCHHHHHHHG----GGTCEEEE
T ss_pred HHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC-C--CCCEEEEeCCCcHHHHHHHH----HcCCEEEE
Confidence 34445556668764 478888999988887776652 2 78999999999999887753 45888877
Q ss_pred eCc-------hhhhc-cC------------CCEeEEEE-EcC-CCCeeeccHH---HHHHHHHhCCcEEEEEeccccc--
Q 001990 286 SDL-------KDIDY-KS------------GDVCGVLV-QYP-GTEGEVLDYG---DFIKNAHANGVKVVMATDLLAL-- 338 (985)
Q Consensus 286 ~~~-------~~l~~-l~------------~~t~~V~v-~~p-n~~G~i~dl~---~I~~~a~~~galliV~a~~~al-- 338 (985)
++. ++|++ +. +++++|++ .+| |.+|.+.+.+ +|+++|+++|+++++| +..+.
T Consensus 159 v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~D-e~~~~~~ 237 (425)
T 2r2n_A 159 VASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIED-DPYYFLQ 237 (425)
T ss_dssp ECEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE-CTTGGGB
T ss_pred eCcCCCCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEE-CCccccc
Confidence 754 45655 44 46888876 466 7899988654 9999999999999995 33331
Q ss_pred --cCC-CCC---CcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccc
Q 001990 339 --TIL-KPP---GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHI 411 (985)
Q Consensus 339 --g~l-~~p---~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~ 411 (985)
|.. .+. ...+.+++++|. |.|+ | |--+|++++++++++.+..
T Consensus 238 ~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~----GlRiG~~~~~~~l~~~l~~-------------------------- 286 (425)
T 2r2n_A 238 FNKFRVPTFLSMDVDGRVIRADSFSKIIS-S----GLRIGFLTGPKPLIERVIL-------------------------- 286 (425)
T ss_dssp SSSSCCCCTGGGCTTSCEEEEEESTTTTC-S----TTCCEEEEEEHHHHHHHHH--------------------------
T ss_pred CCCCCCCCccccCCCCCEEEEccchhhcc-C----ccceEEEecCHHHHHHHHH--------------------------
Confidence 111 111 123566888887 8764 3 2236999999887765410
Q ss_pred cccccCCCccchhH-HHHHHHHHHHHHcCc----chHHHHHHHHHHHHHHHHHHHhc-CCCE-EEcCCCCcceEEEecCC
Q 001990 412 RRDKATSNICTAQA-LLANMAAMYAVYHGP----EGLKTIAQRVHGLAGTFALGLKK-LGTV-EVQGLPFFDTVKVKCAD 484 (985)
Q Consensus 412 rre~atsni~t~~~-l~a~~aa~y~~~~g~----~Gl~~i~~~~~~~a~~l~~~L~~-~g~~-~~~~~~~~~~~~i~~~~ 484 (985)
.+.....+.+.. ..++.++ +..++. +-++++.++..++.+++.+.|++ ++++ .+..+....-+.+++++
T Consensus 287 --~~~~~~~~~~~~~q~a~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~ 362 (425)
T 2r2n_A 287 --HIQVSTLHPSTFNQLMISQL--LHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKG 362 (425)
T ss_dssp --HHHTTTCSSCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETT
T ss_pred --HHHHhcCCCCHHHHHHHHHH--HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCC
Confidence 000001111111 1122222 232221 23566777778888999999987 3335 33322111123344442
Q ss_pred ---HHH-HHHHHHHcCceeeee---------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 485 ---AHA-IASAAYKIEMNLRVV---------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 ---~~~-l~~~L~~~Gi~~~~~---------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
..+ +.+.|.++||.+... ..+.+|++++. .++++++++++.|..
T Consensus 363 ~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~ 419 (425)
T 2r2n_A 363 INDVKELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQ 419 (425)
T ss_dssp CSCCHHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHH
Confidence 445 688888999987532 13689999984 599999999999874
No 413
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.41 E-value=6e-12 Score=149.08 Aligned_cols=271 Identities=13% Similarity=0.107 Sum_probs=167.6
Q ss_pred HHHHHHHhh----C--CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-
Q 001990 216 FQTMIADLT----G--LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL- 288 (985)
Q Consensus 216 ~q~~ia~L~----g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~- 288 (985)
+++.+++++ | .++.++.+++|+|.++..++.++... +||+|+++...|+.+...++. .|.+++.++.
T Consensus 139 lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~--~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~~~~~ 212 (500)
T 3tcm_A 139 LRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRN--EKDGILVPIPQYPLYSASIAL----HGGALVPYYLN 212 (500)
T ss_dssp HHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCS--TTEEEEEEESCCTHHHHHHHH----TTCEEEEEECB
T ss_pred HHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCC--CCCEEEEeCCCcHhHHHHHHH----cCCEEEEEecc
Confidence 344444444 4 55678989999998888777665312 789999999999999888754 4777776642
Q ss_pred ---------hhhhc-cCC------CEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEeccccccCCCC--C-C
Q 001990 289 ---------KDIDY-KSG------DVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILKP--P-G 345 (985)
Q Consensus 289 ---------~~l~~-l~~------~t~~V~v~~p-n~~G~i~---dl~~I~~~a~~~galliV~a~~~alg~l~~--p-~ 345 (985)
++|++ +.+ ++++|++.+| |++|.+. ++++|+++|+++|+++++| +..+...... + .
T Consensus 213 ~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~D-eay~~~~~~~~~~~~ 291 (500)
T 3tcm_A 213 ESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLAD-EVYQENIYVDNKKFH 291 (500)
T ss_dssp TTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE-CTTTTCBCCTTCCCC
T ss_pred cccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEe-cCccccccCCCCCCC
Confidence 44554 433 7899999998 7899885 5788888899999999995 3333322211 0 0
Q ss_pred -------cc-----cc-eEEEecC-ccc-cccCCCCCCceEEEEE---chhhHhcCCCceeeeeecCCCCcceEEecccc
Q 001990 346 -------EL-----GA-DIVVGSA-QRF-GVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTR 407 (985)
Q Consensus 346 -------~~-----Ga-Di~v~s~-k~l-g~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tr 407 (985)
++ +. .|+++|. |.| |.| | -.+|++.+ ++++++.+-
T Consensus 292 s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~-G---~R~G~~~~~~~~~~~~~~l~----------------------- 344 (500)
T 3tcm_A 292 SFKKIVRSLGYGEEDLPLVSYQSVSKGYYGEC-G---KRGGYFEITGFSAPVREQIY----------------------- 344 (500)
T ss_dssp CHHHHHHHTTCSSSCCCEEEEEESSSTTTCCG-G---GCCEEEEEESCCTTHHHHHH-----------------------
T ss_pred cHHHHHHHhccccCCeEEEEEecCCccCCCCC-c---cceEEEEEeCCCHHHHHHHH-----------------------
Confidence 12 12 2566676 888 432 2 23488877 666655430
Q ss_pred cccccccccCCCccchhHHHHHHHHHHHHH---------cCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCC--CCcc
Q 001990 408 EQHIRRDKATSNICTAQALLANMAAMYAVY---------HGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL--PFFD 476 (985)
Q Consensus 408 e~~~rre~atsni~t~~~l~a~~aa~y~~~---------~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~~ 476 (985)
..+ ..+.|++......++.+ +.. .-.+-++++.++..++++++++.|+++.|+++... .++.
T Consensus 345 --~~~----~~~~~~~~~~q~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g~~~~ 417 (500)
T 3tcm_A 345 --KIA----SVNLCSNITGQILASLV-MNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYV 417 (500)
T ss_dssp --HHH----HTTCCCCHHHHHHHHHH-HSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBTTEE
T ss_pred --HHH----hcccCCCHHHHHHHHHH-hcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCeEEEE
Confidence 000 01233333322222211 110 00123566778888999999999999833887642 2221
Q ss_pred eEEEecCC-------------HHH-HHHHHHHcCceeeee-------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 477 TVKVKCAD-------------AHA-IASAAYKIEMNLRVV-------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 477 ~~~i~~~~-------------~~~-l~~~L~~~Gi~~~~~-------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
-+.+..+. ... +.+.|.++||.+... ..+.+|+++. +++++++++++.|..
T Consensus 418 ~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~i~~l~~ 489 (500)
T 3tcm_A 418 FPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--PQEDKIPAVISRFTV 489 (500)
T ss_dssp CCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--SCTTTHHHHHHHHHH
T ss_pred eeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--CCHHHHHHHHHHHHH
Confidence 12233321 112 335566789987542 1357999999 889999999999874
No 414
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.41 E-value=7.6e-12 Score=141.01 Aligned_cols=304 Identities=13% Similarity=0.100 Sum_probs=178.3
Q ss_pred ceecCCCCCCCCCcHHHHHHHHhCC---ccccccCCChhhHhhHHHHHHHHHHHHHHHhhCCCCcceeeccchHHHHHHH
Q 001990 168 KSFIGMGYYNTHVPPVILRNIMENP---AWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAM 244 (985)
Q Consensus 168 ~~~lG~g~~~~~~p~~v~~~i~~~~---~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~ 244 (985)
++|+|.|..|. ++.++. +.+... ..-..|++ . ....++++.+|+++|.+. ..++.+||.+.+.+
T Consensus 12 ~~~l~~~~~p~-~~~~~~-~~~~~~~~~~~~~~y~~-~--------~~~~~l~~~la~~~~~~~--~i~~~~G~~a~~~a 78 (357)
T 3lws_A 12 TTGQISGHGKR-NVGVLK-TAFAAVADEMASDQYGT-G--------AIIEPFEQKFADVLGMDD--AVFFPSGTMAQQVA 78 (357)
T ss_dssp CSEESSBSSCC-BHHHHH-HHHTTSCTTCBCEETTE-E--------TTHHHHHHHHHHHHTCSE--EEEESCHHHHHHHH
T ss_pred hcccccCCCCC-CHHHHH-HHHHHhhcccCcccccC-C--------hHHHHHHHHHHHHhCCCc--EEEecCcHHHHHHH
Confidence 46889997764 334443 445431 11122321 1 123457789999999865 45668888777766
Q ss_pred HHHhhhhcCCCC--EEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-------hhhhccCCCEeEEEEEcCC-CC-eeec
Q 001990 245 AMCNNIQKGKKK--TFIIASNCHPQTIDICITRADGFDIKVVVSDL-------KDIDYKSGDVCGVLVQYPG-TE-GEVL 313 (985)
Q Consensus 245 ~~a~~~~~~~g~--~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~-------~~l~~l~~~t~~V~v~~pn-~~-G~i~ 313 (985)
+.++. . ++| .|+++...|++....... +...|++++.++. +++++. .++++|++.+|+ ++ |.+.
T Consensus 79 l~~~~-~--~gd~~~vi~~~~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~d~~~l~~~-~~~~~v~~~~p~np~~G~~~ 153 (357)
T 3lws_A 79 LRIWS-D--ETDNRTVAYHPLCHLEIHEQDGL-KELHPIETILVGAADRLMTLDEIKAL-PDIACLLLELPQREIGGVAP 153 (357)
T ss_dssp HHHHH-H--HHTCCEEEECTTCHHHHSSTTHH-HHHSSCEEEECSCTTSCCCHHHHHTC-CSCSEEEEESSBGGGTSBCC
T ss_pred HHHHh-h--cCCCcEEEecccceeeeeccchh-hhccCcEEEEecCCCCCcCHHHHhcC-cCcceEEEEcccccCCceeC
Confidence 55543 2 445 788888888776542100 1124888887753 345443 348999999994 55 8876
Q ss_pred ---cHHHHHHHHHhCCcEEEEEecccc---ccCCC-CCC--cccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcC
Q 001990 314 ---DYGDFIKNAHANGVKVVMATDLLA---LTILK-PPG--ELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMM 383 (985)
Q Consensus 314 ---dl~~I~~~a~~~galliV~a~~~a---lg~l~-~p~--~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~l 383 (985)
++++|+++|+++|+++++|. ... .+... +.. ..++|+++.+. |.|++| ..|+++.++++++.+
T Consensus 154 ~~~~l~~i~~~~~~~~~~li~D~-a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~------~gg~~~~~~~~~~~~ 226 (357)
T 3lws_A 154 AFSELETISRYCRERGIRLHLDG-ARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGI------AGAILAGPAAFCQTA 226 (357)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEE-TTHHHHHHHHTCCHHHHHTTSSEEEEESSSTTCCS------SCEEEEECHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCEEEEEC-chhhhhhhhcCCChHHHHhcCCEEEEeccccCCCC------ceEEEEcCHHHHHHH
Confidence 59999999999999999952 221 11111 111 14589988887 877543 338898888877654
Q ss_pred CCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhc
Q 001990 384 PGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK 463 (985)
Q Consensus 384 p~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~ 463 (985)
.. + +. ...++.+ +...+ +..+...+... ++. .++..++++++.+.|++
T Consensus 227 ~~--------------~------~~----~~~~~~~--~~~~~-~~~~~~~l~~~----~~~-~~~~~~~~~~l~~~L~~ 274 (357)
T 3lws_A 227 RI--------------W------KR----RYGGDLI--SLYPY-IVSADYYYELR----KDR-MGQYYEQAKQLAEQFNA 274 (357)
T ss_dssp HH--------------H------HH----HTTCCCS--CCHHH-HHHHHHHHHHH----TTC-HHHHHHHHHHHHHHHHT
T ss_pred HH--------------H------HH----HhcCCcc--cchHH-HHHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHh
Confidence 10 0 00 0001111 11111 11111111211 112 23346778899999999
Q ss_pred CCCEEEc-CCCCcceEEEecCC-----HHHHHHHHHHcCceeeee---cCC--eEEEEeccC---CCHHHHHHHHHHHh
Q 001990 464 LGTVEVQ-GLPFFDTVKVKCAD-----AHAIASAAYKIEMNLRVV---DSN--TVTASFDET---TTLEDVDKLFIVFA 528 (985)
Q Consensus 464 ~g~~~~~-~~~~~~~~~i~~~~-----~~~l~~~L~~~Gi~~~~~---~~~--~lris~~~~---~t~edid~ll~~l~ 528 (985)
++|+++. .++..+-+.++++. ..++.+.|.++||.++.. .++ .+|++++.. .+++++++.++.|.
T Consensus 275 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~ 353 (357)
T 3lws_A 275 LPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLR 353 (357)
T ss_dssp STTEEEESSSCSSSEEEEEEESCHHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHH
T ss_pred CCCCeeccCCCcceEEEEEecCChHHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHH
Confidence 8449884 33322333344332 567889999999987542 133 789988754 57788888887775
No 415
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.40 E-value=1.1e-11 Score=144.26 Aligned_cols=273 Identities=9% Similarity=0.022 Sum_probs=164.9
Q ss_pred HHHHHHHHhh------CCCCcceeeccchHHHHHHHHHHhhhhcCCCC--------------EEEEc-CCCChhHHHHHH
Q 001990 215 NFQTMIADLT------GLPMSNASLLDEGTAAAEAMAMCNNIQKGKKK--------------TFIIA-SNCHPQTIDICI 273 (985)
Q Consensus 215 e~q~~ia~L~------g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~--------------~Vlv~-~~~h~s~~~~~~ 273 (985)
++++.+|+++ +.++.++.+++|+|.+++.++.++. . +|| +||++ ...|+.+...+.
T Consensus 87 ~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~-~--~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~ 163 (444)
T 3if2_A 87 AFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFG-G--AFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHV 163 (444)
T ss_dssp HHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSS-E--EEECC-------CEEEEEEEESSSSCCGGGTTCCS
T ss_pred HHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHh-C--CCccccccccccccccceEEEeCCCCccchhhccc
Confidence 4666777776 5677789999999988888776652 2 555 78886 677777665321
Q ss_pred H--hhcCCCeEEEEeC-------------chhhhc----cCCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEE
Q 001990 274 T--RADGFDIKVVVSD-------------LKDIDY----KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVV 330 (985)
Q Consensus 274 ~--~a~~~gi~v~~~~-------------~~~l~~----l~~~t~~V~v~~p-n~~G~i~d---l~~I~~~a~~~galli 330 (985)
. .....|..++.++ +++|++ +++++++|++++| |.+|.+.+ +++|+++|+++|++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li 243 (444)
T 3if2_A 164 EGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLI 243 (444)
T ss_dssp SSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEE
T ss_pred ccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEE
Confidence 0 1234566665443 345554 3678999999988 67999988 8999999999999999
Q ss_pred EEeccccc-----cCC-CCCCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEe
Q 001990 331 MATDLLAL-----TIL-KPPGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVA 403 (985)
Q Consensus 331 V~a~~~al-----g~l-~~p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~ 403 (985)
+|. ..+. ... ..+...+.+++++|. | ++.| |-.+|++.+++++.+.+...
T Consensus 244 ~De-~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK-~~~~----G~r~G~~~~~~~l~~~~~~~----------------- 300 (444)
T 3if2_A 244 IDN-AYGMPFPNIIYSDAHLNWDNNTILCFSLSK-IGLP----GMRTGIIVADAKVIEAVSAM----------------- 300 (444)
T ss_dssp EEC-TTCTTTTCCBCSCCCCCCCTTEEEEEESTT-TTCG----GGCCEEEECCHHHHHHHHHH-----------------
T ss_pred EEC-CCCCcccccccccccccCCCCEEEEechhh-ccCC----CCceEEEEECHHHHHHHHHH-----------------
Confidence 953 2221 111 122346789999998 6 4432 33578998888877665110
Q ss_pred ccccccccccc-ccCCCccchhHHHHHHHHHHHHHcC-cchHHH-HHHHHHHHHHHHHHHHh----cCCCEEEcCCCCcc
Q 001990 404 MQTREQHIRRD-KATSNICTAQALLANMAAMYAVYHG-PEGLKT-IAQRVHGLAGTFALGLK----KLGTVEVQGLPFFD 476 (985)
Q Consensus 404 l~tre~~~rre-~atsni~t~~~l~a~~aa~y~~~~g-~~Gl~~-i~~~~~~~a~~l~~~L~----~~g~~~~~~~~~~~ 476 (985)
++. ..+.+. ....+..+.+ .... .+-+++ +.++..++.+++++.|. .++ +.+.......
T Consensus 301 --------~~~~~~~~~~---~~~~a~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~g~ 366 (444)
T 3if2_A 301 --------NAVVNLAPTR---FGAAIATPLV--ANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYP-LMIHKPEGAI 366 (444)
T ss_dssp --------HHHHHSSCCC---HHHHHHHHHH--HTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSS-EEEECCCBSS
T ss_pred --------HHhccCCCCh---HHHHHHHHHH--HcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-ceEecCCccE
Confidence 000 000111 1121221211 1100 000111 33344444455555544 344 6665322111
Q ss_pred eEEEecC--C--HHHHHHHHHHcCceeeeec--------------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 477 TVKVKCA--D--AHAIASAAYKIEMNLRVVD--------------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 477 ~~~i~~~--~--~~~l~~~L~~~Gi~~~~~~--------------~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
-+.+.++ + ..++.+.|.++||.+.... .+.+|+|++. ++++|+++++.|..
T Consensus 367 ~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~ 435 (444)
T 3if2_A 367 FLWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGE 435 (444)
T ss_dssp EEEEEETTCSSCHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCCHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHH
Confidence 2333333 2 7889999999999875421 1579999997 99999999999974
No 416
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.40 E-value=2.7e-11 Score=140.82 Aligned_cols=275 Identities=15% Similarity=0.151 Sum_probs=162.3
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhh-h--h-c--CCC-CEEEEcCCC-ChhHHHHHHHhhc-----CC
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-I--Q-K--GKK-KTFIIASNC-HPQTIDICITRAD-----GF 279 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~--~-~--~~g-~~Vlv~~~~-h~s~~~~~~~~a~-----~~ 279 (985)
..++++.+++++|.+ ++.++++||.++++++.+.+ + + + .+| ++||+.+.. |..+...+..... .+
T Consensus 109 ~~~l~~~la~~~g~~--~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~ 186 (433)
T 1z7d_A 109 LGICERYLTNLLGYD--KVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNF 186 (433)
T ss_dssp HHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------------------
T ss_pred HHHHHHHHHhhcCCC--eEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccC
Confidence 445678899999854 58888999999888765433 1 1 0 134 889888854 4544444321100 01
Q ss_pred C---eEEEEe---Cchhhhc-c-CCCEeEEEEEcC-CCCeeec----cHHHHHHHHHhCCcEEEEEecccc-ccCCCCC-
Q 001990 280 D---IKVVVS---DLKDIDY-K-SGDVCGVLVQYP-GTEGEVL----DYGDFIKNAHANGVKVVMATDLLA-LTILKPP- 344 (985)
Q Consensus 280 g---i~v~~~---~~~~l~~-l-~~~t~~V~v~~p-n~~G~i~----dl~~I~~~a~~~galliV~a~~~a-lg~l~~p- 344 (985)
+ ..+..+ |+++|++ + ++++++|+++.. +.+|.+. ++++|.++|+++|+++++| +..+ +|-....
T Consensus 187 ~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~D-Ev~~g~g~~g~~~ 265 (433)
T 1z7d_A 187 GPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVAD-EVQTGLGRTGKLL 265 (433)
T ss_dssp -----CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEE-CTTTTTTTTSSSS
T ss_pred CCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEe-cCccCCCcCCcch
Confidence 1 234444 3466766 7 678888777643 4579875 8999999999999999995 2332 3321111
Q ss_pred --Cc--ccceEEEecCccccccCCCCC-CceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCC
Q 001990 345 --GE--LGADIVVGSAQRFGVPMGYGG-PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 345 --~~--~GaDi~v~s~k~lg~P~~~GG-P~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsn 419 (985)
.. ...|+++. +|.|++ | --+|++++++++.+.+... .. ..|.+
T Consensus 266 ~~~~~~~~~di~t~-sK~l~~-----G~~~~G~v~~~~~~~~~l~~~----------~~----------------~~t~~ 313 (433)
T 1z7d_A 266 CVHHYNVKPDVILL-GKALSG-----GHYPISAVLANDDIMLVIKPG----------EH----------------GSTYG 313 (433)
T ss_dssp GGGGGTCCCSEEEE-CGGGGT-----TSSCCEEEEECHHHHTTCCTT----------CC----------------CCTTT
T ss_pred hhHhcCCCCCEEEE-CccccC-----CCCCeEEEEECHHHHhhhccc----------cc----------------cccCC
Confidence 11 24787633 487752 2 1258888999887766220 00 01111
Q ss_pred ccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcC--CCEE---Ec-CCCCcceEEEecC-C-HHHHHHH
Q 001990 420 ICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL--GTVE---VQ-GLPFFDTVKVKCA-D-AHAIASA 491 (985)
Q Consensus 420 i~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~--g~~~---~~-~~~~~~~~~i~~~-~-~~~l~~~ 491 (985)
. ++....+..+++ ..+..+ ++.++..++.+++++.|+++ + +. .. +...+-.+.+... . +.++.+.
T Consensus 314 ~-~~~~~aaa~aal--~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~-~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~ 386 (433)
T 1z7d_A 314 G-NPLAASICVEAL--NVLINE---KLCENAEKLGGPFLENLKRELKD-SKIVRDVRGKGLLCAIEFKNELVNVLDICLK 386 (433)
T ss_dssp T-CHHHHHHHHHHH--HHHHHT---THHHHHHHHHHHHHHHHHHHHTT-CTTEEEEEEETTEEEEEECTTTCCHHHHHHH
T ss_pred C-CHHHHHHHHHHH--HHHHhc---cHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeeeeEEEEEEccChhHHHHHHHH
Confidence 1 111122222222 333222 45667778888888888764 3 31 11 1111212333222 2 7789999
Q ss_pred HHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 492 AYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 492 L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
|.++||.+.....+.+|++++..+|++|+++++++|..
T Consensus 387 l~~~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~ 424 (433)
T 1z7d_A 387 LKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVK 424 (433)
T ss_dssp HHHTTEECCEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHCCeEEecCCCCEEEEECCcCCCHHHHHHHHHHHHH
Confidence 99999998765568999999999999999999999974
No 417
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.39 E-value=3.6e-11 Score=139.26 Aligned_cols=280 Identities=12% Similarity=0.080 Sum_probs=171.7
Q ss_pred HHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhh-hhc---CCCCEEEEcC-CCChhHHHHHHHh------hc-----
Q 001990 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQK---GKKKTFIIAS-NCHPQTIDICITR------AD----- 277 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~~---~~g~~Vlv~~-~~h~s~~~~~~~~------a~----- 277 (985)
.++.+.++++++.+..++.+++|||.++++++.+.+ +.. .+|++||+.+ ..|+.....+... ..
T Consensus 89 ~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~ 168 (429)
T 1s0a_A 89 IELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGY 168 (429)
T ss_dssp HHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTT
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCC
Confidence 456678999998777789899999988888765432 221 1478999888 4666554443210 00
Q ss_pred CCCeEEEEe------------Cchhhhc-cC---CCEeEEEEEcC--CCCeeecc----HHHHHHHHHhCCcEEEEEecc
Q 001990 278 GFDIKVVVS------------DLKDIDY-KS---GDVCGVLVQYP--GTEGEVLD----YGDFIKNAHANGVKVVMATDL 335 (985)
Q Consensus 278 ~~gi~v~~~------------~~~~l~~-l~---~~t~~V~v~~p--n~~G~i~d----l~~I~~~a~~~galliV~a~~ 335 (985)
..++..+.+ |+++|++ ++ +++++|++..+ |.+|.+.+ +++|.++|+++|+++++| +.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~D-e~ 247 (429)
T 1s0a_A 169 LPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIAD-EI 247 (429)
T ss_dssp SCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEE-CT
T ss_pred CCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEe-eh
Confidence 013443332 3345555 54 57877776654 56998776 999999999999999995 23
Q ss_pred cc-ccCCCCC-----CcccceEEEecCccccccCCCCC-CceEEEEEchhhHhcCCCceeeeeecCCCCcceEEeccccc
Q 001990 336 LA-LTILKPP-----GELGADIVVGSAQRFGVPMGYGG-PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTRE 408 (985)
Q Consensus 336 ~a-lg~l~~p-----~~~GaDi~v~s~k~lg~P~~~GG-P~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre 408 (985)
.+ +|..... .....|+++.| |+|++ | -.+|++++++++++.+... +...+
T Consensus 248 ~~~~g~~g~~~~~~~~~~~~d~~t~s-K~l~~-----G~~~iG~~~~~~~~~~~l~~~---------~~~~~-------- 304 (429)
T 1s0a_A 248 ATGFGRTGKLFACEHAEIAPDILCLG-KALTG-----GTMTLSATLTTREVAETISNG---------EAGCF-------- 304 (429)
T ss_dssp TTTTTTTSSSSGGGGGTCCCSEEEEC-GGGGT-----SSSCCEEEEECHHHHHHHHTS---------TTSSC--------
T ss_pred hhCCcccchHHHhhhcCCCCCEEEec-ccccC-----CCccceEEEeCHHHHHHhhcC---------CCccc--------
Confidence 32 4322111 12356877544 87752 3 3478999998887665210 00000
Q ss_pred ccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCC---CEEEcCCCCcceEEEecCC-
Q 001990 409 QHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQGLPFFDTVKVKCAD- 484 (985)
Q Consensus 409 ~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~~~~~i~~~~- 484 (985)
...+|.+. ++.+..+..+++ ..+..+ ++.++..++.++++++|++++ ++..... ...-+.+.+++
T Consensus 305 ----~~~~t~~~-n~~~~~a~~aal--~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~~~~~~~ 373 (429)
T 1s0a_A 305 ----MHGPTFMG-NPLACAAANASL--AILESG---DWQQQVADIEVQLREQLAPARDAEMVADVRV-LGAIGVVETTHP 373 (429)
T ss_dssp ----SCCCTTTT-CHHHHHHHHHHH--HHHHTC---HHHHHHHHHHHHHHHHHGGGGGCTTEEEEEE-ETTEEEEEESSC
T ss_pred ----ccCCCCCC-CHHHHHHHHHHH--HHHHhC---CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEE-eeEEEEEEECCc
Confidence 01122221 112222333333 332222 456777888999999998752 2432211 11123344442
Q ss_pred --HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 485 --AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 --~~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+.++.+.|.++||.++.. ++.+|++++..+|++|+++++++|..
T Consensus 374 ~~~~~l~~~l~~~Gi~v~~~-~~~iRis~~~~~t~e~i~~~~~~l~~ 419 (429)
T 1s0a_A 374 VNMAALQKFFVEQGVWIRPF-GKLIYLMPPYIILPQQLQRLTAAVNR 419 (429)
T ss_dssp BCHHHHHHHHHHTTEECCCB-TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHCCCEEecc-CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 778999999999988763 47899999999999999999999974
No 418
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.39 E-value=1.6e-11 Score=143.36 Aligned_cols=272 Identities=13% Similarity=0.043 Sum_probs=166.1
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCC-hhHHHHHHHhhcCCCeEEEEeCc---
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCH-PQTIDICITRADGFDIKVVVSDL--- 288 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h-~s~~~~~~~~a~~~gi~v~~~~~--- 288 (985)
..++++.+|+++|.+ ++.++.+||.+++.++.++ .. +|| +++...| +++...++. .|.+++.++.
T Consensus 77 ~~~l~~~la~~~~~~--~~~~~~~gt~a~~~al~~l-~~--~gd--i~~~~~~~~~~~~~~~~----~G~~~~~v~~~~~ 145 (456)
T 2ez2_A 77 FYHLERTVQELFGFK--HIVPTHQGRGAENLLSQLA-IK--PGQ--YVAGNMYFTTTRYHQEK----NGAVFVDIVRDEA 145 (456)
T ss_dssp HHHHHHHHHHHHCCS--EEEEESSHHHHHHHHHHHH-CC--TTC--EEEESSCCHHHHHHHHH----TTCEEEECBCGGG
T ss_pred HHHHHHHHHHHhCCC--cEEEeCCcHHHHHHHHHHh-CC--CCC--EeccccccchhHHHHHH----cCCEEEEeccccc
Confidence 455788999999986 4778899998888777665 23 778 5666666 887777643 5777777643
Q ss_pred ---------------hhhhc-cCCC----EeEEEEEcC-C-CCeeecc---HHHHHHHHHhCCcEEEEEecccccc----
Q 001990 289 ---------------KDIDY-KSGD----VCGVLVQYP-G-TEGEVLD---YGDFIKNAHANGVKVVMATDLLALT---- 339 (985)
Q Consensus 289 ---------------~~l~~-l~~~----t~~V~v~~p-n-~~G~i~d---l~~I~~~a~~~galliV~a~~~alg---- 339 (985)
++|++ ++++ +++|++++| | .+|.+.| +++|+++|+++|+++++| +..+.|
T Consensus 146 ~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~D-e~~~~g~~~~ 224 (456)
T 2ez2_A 146 HDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYD-ATRCVENAYF 224 (456)
T ss_dssp GCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEE-CTTHHHHHHH
T ss_pred ccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEE-cccccccccc
Confidence 33444 4444 488899988 5 7998876 999999999999999995 344443
Q ss_pred -----C-C-CCCC-------cccceEEEecCccccccCCCCCCceEEEEE-chhhHhcCCCceeeeeecCCCCcceEEec
Q 001990 340 -----I-L-KPPG-------ELGADIVVGSAQRFGVPMGYGGPHAAFLAT-SQEYKRMMPGRIVGVSIDSSGKPALRVAM 404 (985)
Q Consensus 340 -----~-l-~~p~-------~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~-~~~~~~~lp~~~vG~s~d~~g~~~~~l~l 404 (985)
. . ..+- ....|+++.|+|+++++ |..|++++ ++++.+.+...... . .+ .
T Consensus 225 ~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~-----~~gG~~~~~~~~~~~~~~~~~~~---~-~~-------~ 288 (456)
T 2ez2_A 225 IKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLV-----NIGGFLCMNDDEMFSSAKELVVV---Y-EG-------M 288 (456)
T ss_dssp HHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCC-----SSCEEEEESCHHHHHHHHHHHHH---H-TC-------C
T ss_pred ccccccccCCcchhhhhhhhcccCCEEEEeCcccCCC-----CceeEEEECCHHHHHHHHHHHhh---c-cC-------c
Confidence 1 1 1110 12369988877766431 23588888 56766554100000 0 00 0
Q ss_pred ccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEEec--
Q 001990 405 QTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKVKC-- 482 (985)
Q Consensus 405 ~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i~~-- 482 (985)
...+..| + ..+.++..+ .+..+. ++..++..++++++++.|++.| +++..+.....+.+..
T Consensus 289 --------~~~~~~~--~-~~~~a~a~~-~~~~~~----~~~~~~~~~~~~~l~~~L~~~g-~~~~~p~~~~~~~~~~~~ 351 (456)
T 2ez2_A 289 --------PSYGGLA--G-RDMEAMAIG-LREAMQ----YEYIEHRVKQVRYLGDKLKAAG-VPIVEPVGGHAVFLDARR 351 (456)
T ss_dssp --------TTTTTCC--H-HHHHHHHHH-HHHHTC----HHHHHHHHHHHHHHHHHHHHTT-CCBCSSCCSSEEEEEHHH
T ss_pred --------ccccCcc--h-hHHHHHHHH-HHHHhH----HHHHHHHHHHHHHHHHHHhcCC-CccccCCCceEEEEEhHH
Confidence 0001111 1 122121111 112221 4566777888899999998876 7665322122233332
Q ss_pred --CC--HHHH-----HHHH-HHcCceeee---e--------------cCCeEEEEeccC-CCHHHHHHHHHHHhC
Q 001990 483 --AD--AHAI-----ASAA-YKIEMNLRV---V--------------DSNTVTASFDET-TTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 --~~--~~~l-----~~~L-~~~Gi~~~~---~--------------~~~~lris~~~~-~t~edid~ll~~l~~ 529 (985)
++ ..++ .++| .++||.+.. . ..+.+|+|++.. +|++|+++++++|..
T Consensus 352 ~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~ 426 (456)
T 2ez2_A 352 FCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIK 426 (456)
T ss_dssp HTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred hcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 22 3344 6677 577986421 0 127899999987 899999999999974
No 419
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.39 E-value=6.6e-12 Score=143.95 Aligned_cols=273 Identities=11% Similarity=0.001 Sum_probs=160.6
Q ss_pred HHHHHHHHHhhCCC------Ccceee--ccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001990 214 LNFQTMIADLTGLP------MSNASL--LDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 214 ~e~q~~ia~L~g~~------~~~~sl--~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~ 285 (985)
.++++.+|++++.. +.++.+ +.|+|.++..++.++....++||+|++++..|+.+...++. .|.+++.
T Consensus 74 ~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~----~g~~~~~ 149 (401)
T 7aat_A 74 ADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRD----AGLQLQA 149 (401)
T ss_dssp HHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHH----TTCEEEE
T ss_pred HHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHH----cCCeeEe
Confidence 34667777777543 556765 89999887766544321113789999999999999888754 4777777
Q ss_pred eCc----------hhhhc----cCCCEeEEEEEcC-CCCeee---ccHHHHHHHHHhCCcEEEEEeccc-cccCCCC---
Q 001990 286 SDL----------KDIDY----KSGDVCGVLVQYP-GTEGEV---LDYGDFIKNAHANGVKVVMATDLL-ALTILKP--- 343 (985)
Q Consensus 286 ~~~----------~~l~~----l~~~t~~V~v~~p-n~~G~i---~dl~~I~~~a~~~galliV~a~~~-alg~l~~--- 343 (985)
++. +++++ +.+++++|++.+| |.+|.+ +++++|+++|+++|+++++|. .. .++.-..
T Consensus 150 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De-ay~~~~~~~~~~~ 228 (401)
T 7aat_A 150 YRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDM-AYQGFASGDINRD 228 (401)
T ss_dssp EECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEE-SCTTTTTSCHHHH
T ss_pred eeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEcc-ccccccCCCcccc
Confidence 654 22222 3467888899888 689965 468999999999999999953 22 2221110
Q ss_pred -------CCcccceEEEecC-ccccccCCCCCCceEEEEE---chhhHhcCCCceeeeeecCCCCcceEEeccccccccc
Q 001990 344 -------PGELGADIVVGSA-QRFGVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIR 412 (985)
Q Consensus 344 -------p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~r 412 (985)
....+-.|+++|. |.|+.| |..+|++++ +++..+.+- + .-...+
T Consensus 229 ~~~~~~~~~~~~~~i~~~S~sK~~~~~----G~RiG~l~~~~~~~~~~~~~~----~-----------------~~~~~~ 283 (401)
T 7aat_A 229 AWALRHFIEQGIDVVLSQSYAKNMGLY----GERAGAFTVICRDAEEAKRVE----S-----------------QLKILI 283 (401)
T ss_dssp THHHHHHHHTTCCCEEEEECTTTSCCG----GGCEEEEEEECSSHHHHHHHH----H-----------------HHHHHH
T ss_pred HHHHHHHHhcCCcEEEEecCCcccccc----cCceEEEEEEeCCHHHHHHHH----H-----------------HHHHHH
Confidence 0122345677886 877533 234788876 333222210 0 000000
Q ss_pred ccccCCCccchhHHHHHHHHHHHHHcC------cchHHHHHHHHHHHHHHHHHHHhcCC---CEEEcCCCCcceEEE-ec
Q 001990 413 RDKATSNICTAQALLANMAAMYAVYHG------PEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQGLPFFDTVKV-KC 482 (985)
Q Consensus 413 re~atsni~t~~~l~a~~aa~y~~~~g------~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~~~~~i-~~ 482 (985)
+ ..++|.. ......++.++. .+ .+-+++..++..++.+++.+.|+++| ++++.. +...-+.+ ..
T Consensus 284 ~-~~~~~~~---~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~ 357 (401)
T 7aat_A 284 R-PMYSNPP---MNGARIASLILN-TPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHIT-DQIGMFCFTGL 357 (401)
T ss_dssp H-HHHSSCC---HHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHH-HCCSSEEECCC
T ss_pred H-hccCCCC---hHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceec-CCcceEEecCC
Confidence 1 1122221 111111211111 00 23366777888899999999998874 122221 11111222 22
Q ss_pred CCHHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001990 483 ADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 483 ~~~~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~ 528 (985)
+ .+.+...|.++||.+.. .+|+|++..++++ |++++++|.
T Consensus 358 ~-~~~~~~ll~~~gi~v~~----~~Ris~~~~~~~~-i~~~~~~l~ 397 (401)
T 7aat_A 358 K-PEQVERLTKEFSIYMTK----DGRISVAGVASSN-VGYLAHAIH 397 (401)
T ss_dssp C-HHHHHHHHHHHCEECCT----TCEEEGGGCCTTT-HHHHHHHHH
T ss_pred C-HHHHHHHHHhCCEeccC----CCeEEeccCChhh-HHHHHHHHH
Confidence 2 45554445678998753 4799998766665 999999986
No 420
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.37 E-value=1.2e-11 Score=139.46 Aligned_cols=305 Identities=16% Similarity=0.134 Sum_probs=178.6
Q ss_pred eecCCCCCCCCCcHHHHHHHHhCCccccccCCChhhHhhHHHHHHHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHh
Q 001990 169 SFIGMGYYNTHVPPVILRNIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCN 248 (985)
Q Consensus 169 ~~lG~g~~~~~~p~~v~~~i~~~~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~ 248 (985)
...|.|..|...++.+.+++.+.-. . ..|.+. ....++++.+|+++|.+. ..++.+||.+.+.++.++
T Consensus 16 ~~~~~~~~~~g~~p~v~~ai~~~~~-~---~~~~~~------~~~~~l~~~la~~~~~~~--~i~~~~g~~a~~~a~~~~ 83 (359)
T 3pj0_A 16 KLGGNGPRNVGVLTEALQNIDDNLE-S---DIYGNG------AVIEDFETKIAKILGKQS--AVFFPSGTMAQQIALRIW 83 (359)
T ss_dssp ESSSSSCCBHHHHHHHTTTSCTTCB-C---CBTTBS------HHHHHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHH
T ss_pred hhcCCCccccCCCHHHHHHHHhhcc-c---CcccCC------HHHHHHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHH
Confidence 4557776665556666545544222 1 122221 234567889999999876 356688887777666554
Q ss_pred hhhcCCCCE--EEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-------hhhhccCCCEeEEEEEcC-CCC-eeeccH--
Q 001990 249 NIQKGKKKT--FIIASNCHPQTIDICITRADGFDIKVVVSDL-------KDIDYKSGDVCGVLVQYP-GTE-GEVLDY-- 315 (985)
Q Consensus 249 ~~~~~~g~~--Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~-------~~l~~l~~~t~~V~v~~p-n~~-G~i~dl-- 315 (985)
. . ++++ |+++...|+....... .+...|.+++.++. +++++..+++++|++++| |++ |.+.|.
T Consensus 84 ~-~--~g~~~vvi~~~~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~~d~~~l~~~~~~~~~v~~~~p~n~~~G~~~~~~~ 159 (359)
T 3pj0_A 84 A-D--RKENRRVAYHPLSHLEIHEQDG-LKELQQITPLLLGTANQLLTIDDIKSLREPVSSVLIELPQREIGGQLPAFEE 159 (359)
T ss_dssp H-H--HHTCCEEEECTTCHHHHSSTTH-HHHHHCCEEEECSCTTSCCCHHHHHTCSSCCSEEEEESSBGGGTSBCCCHHH
T ss_pred H-h--cCCCcEEEEeccceeeehhcch-HHHhcCceEEecCCcCCCcCHHHHHhccCCceEEEEEecccCCCcccCCHHH
Confidence 3 2 4454 6667677765432110 01123788888764 334434567999999998 565 788665
Q ss_pred -HHHHHHHHhCCcEEEEEeccccccC---CC-CC--CcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCce
Q 001990 316 -GDFIKNAHANGVKVVMATDLLALTI---LK-PP--GELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRI 387 (985)
Q Consensus 316 -~~I~~~a~~~galliV~a~~~alg~---l~-~p--~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~ 387 (985)
++|+++|+++|+++++|. ....+. .. ++ -..++|+++.+. |+|++| ..|+++.++++++++...
T Consensus 160 l~~l~~~~~~~~~~li~D~-a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~------~gg~~~~~~~l~~~~~~~- 231 (359)
T 3pj0_A 160 LEKISEYCHEQGISLHLDG-ARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGI------AGAILAGNDDFVQEAKIW- 231 (359)
T ss_dssp HHHHHHHHHHHTCEEEEEE-TTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCS------SCEEEEECHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCEEEEEC-cchhcchhhhCCCHHHhhccCCEEEEeccccCCCc------ceEEEECCHHHHHHHHHH-
Confidence 555999999999999953 222111 11 11 124789998887 777654 227888888887665100
Q ss_pred eeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCE
Q 001990 388 VGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTV 467 (985)
Q Consensus 388 vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~ 467 (985)
+ ....++.+. ...+ +..+...+... + +..++..++++++++.|+++.|+
T Consensus 232 -------------------~----~~~~~~~~~--~~~~-~~a~~~~l~~~----~-~~~~~~~~~~~~l~~~L~~~~g~ 280 (359)
T 3pj0_A 232 -------------------K----RRYGGDLIS--LYPY-ILSADYYFEKR----I-GKMAEYFEAAKGLAERFNSCSGV 280 (359)
T ss_dssp -------------------H----HHTTCCCSC--CHHH-HHHHHHHHHHH----G-GGHHHHHHHHHHHHHHHHTSTTE
T ss_pred -------------------H----HHhCCCcch--hHHH-HHHHHHHHHHH----H-HHhHHHHHHHHHHHHHHhhCCCc
Confidence 0 000011111 1111 11111111211 2 23344577889999999998338
Q ss_pred EEc-CCCCcceEEEecCC-----HHHHHHHHHHcCceeeee-----c-CCeEEEEecc---CCCHHHHHHHHHHHh
Q 001990 468 EVQ-GLPFFDTVKVKCAD-----AHAIASAAYKIEMNLRVV-----D-SNTVTASFDE---TTTLEDVDKLFIVFA 528 (985)
Q Consensus 468 ~~~-~~~~~~~~~i~~~~-----~~~l~~~L~~~Gi~~~~~-----~-~~~lris~~~---~~t~edid~ll~~l~ 528 (985)
++. .++..+-+.++++. ..++.+.|.++||.+... . .+.+|++++. ..+.+++++.++.|.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~ 356 (359)
T 3pj0_A 281 KTVPEVPVSNMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLE 356 (359)
T ss_dssp EEESSSCSSSEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHH
T ss_pred eeeccCCcceEEEEEecCccchhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHH
Confidence 885 23323334444432 578899999999987542 1 2568888864 357888888888775
No 421
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.35 E-value=2.9e-11 Score=140.99 Aligned_cols=287 Identities=16% Similarity=0.143 Sum_probs=169.6
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhh-hhc----CCCCEEEEcC-CCChhHHHHHHHhh-----cC---
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQK----GKKKTFIIAS-NCHPQTIDICITRA-----DG--- 278 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~~----~~g~~Vlv~~-~~h~s~~~~~~~~a-----~~--- 278 (985)
..++++.++++++.+..++.+++|||.++++++.+++ +.+ .++++||+.+ .-|..+...+.... +.
T Consensus 95 ~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~ 174 (449)
T 3a8u_X 95 SFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQ 174 (449)
T ss_dssp HHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCC
T ss_pred HHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCC
Confidence 4467789999998777788899999999888775543 111 1468888765 56665554443210 01
Q ss_pred --CCeEEEEe-----------C--------chhhhc-cC----CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCc
Q 001990 279 --FDIKVVVS-----------D--------LKDIDY-KS----GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGV 327 (985)
Q Consensus 279 --~gi~v~~~-----------~--------~~~l~~-l~----~~t~~V~v~~p-n~~G~i~d----l~~I~~~a~~~ga 327 (985)
.|+..+.+ | +++|++ +. +++++|+++.. +.+|.+.+ +++|.++|+++|+
T Consensus 175 ~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~ 254 (449)
T 3a8u_X 175 PMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNI 254 (449)
T ss_dssp CSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTC
T ss_pred CCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCC
Confidence 24444432 2 344555 54 56777776543 45899888 9999999999999
Q ss_pred EEEEEeccc-cccCCCCC---Cccc--ceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceE
Q 001990 328 KVVMATDLL-ALTILKPP---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALR 401 (985)
Q Consensus 328 lliV~a~~~-alg~l~~p---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~ 401 (985)
++++| +.. ++|..... ..+| .|+++. +|+|++ |+--+|++++++++++.+... +.+
T Consensus 255 ~li~D-ev~~~~g~~g~~~~~~~~~~~~di~s~-sK~l~~----G~~~~G~~~~~~~~~~~l~~~---------~~~--- 316 (449)
T 3a8u_X 255 LLVFD-EVITGFGRTGSMFGADSFGVTPDLMCI-AKQVTN----GAIPMGAVIASTEIYQTFMNQ---------PTP--- 316 (449)
T ss_dssp EEEEE-CTTTTTTTTSSSSHHHHHTCCCSEEEE-CGGGGT----TSSCCEEEEEEHHHHHHHHTC---------SSC---
T ss_pred EEEEe-ccccCccccCcchhhhhcCCCCCEEEE-cccccC----CCCceEEEEECHHHHHHhhcc---------Ccc---
Confidence 99995 333 35432211 1233 587643 388852 211267788888877665210 000
Q ss_pred EecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcC--CCCcceEE
Q 001990 402 VAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG--LPFFDTVK 479 (985)
Q Consensus 402 l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~--~~~~~~~~ 479 (985)
. .+... ....|.+. ++....+..+++ ..+..+ ++.++..++.+++++.|++++.+..+. .+...-+.
T Consensus 317 --~--~~~~~-~~~~t~~~-~~~~~aa~~aal--~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~g~~~~ 385 (449)
T 3a8u_X 317 --E--YAVEF-PHGYTYSA-HPVACAAGLAAL--CLLQKE---NLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGA 385 (449)
T ss_dssp --T--TSCSS-CCCCTTTT-CHHHHHHHHHHH--HHHHHT---THHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEE
T ss_pred --c--ccccc-cccCCCcc-cHHHHHHHHHHH--HHHHhc---CHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeEEEEE
Confidence 0 00000 00112111 111222222332 332222 356777888899999998753221110 01111233
Q ss_pred EecCC---H-----HHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 480 VKCAD---A-----HAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 480 i~~~~---~-----~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+.++. . .++.+.|.++||.++... +.+|++++..+|++|+++++++|..
T Consensus 386 i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRis~~~~~t~~~i~~~l~~l~~ 442 (449)
T 3a8u_X 386 IQIAPRDGDAIVRPFEAGMALWKAGFYVRFGG-DTLQFGPTFNSKPQDLDRLFDAVGE 442 (449)
T ss_dssp EEECCBTTBSSHHHHHHHHHHHHHTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEecCcccccccHHHHHHHHHHCCcEEecCC-CEEEEECCCcCCHHHHHHHHHHHHH
Confidence 44332 1 268999999999987653 8899999999999999999999974
No 422
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.35 E-value=5e-11 Score=137.91 Aligned_cols=325 Identities=13% Similarity=0.132 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHcCCCccceecCCCCCC---CCCcHHHHHHHHhC-----CccccccCCChhhHhhHHHHHHHHHHHHHH
Q 001990 150 ESQMIEHMQKLASMNKVYKSFIGMGYYN---THVPPVILRNIMEN-----PAWYTQYTPYQAEIAQGRLESLLNFQTMIA 221 (985)
Q Consensus 150 e~e~~~~~~~~~~~n~~~~~~lG~g~~~---~~~p~~v~~~i~~~-----~~~~t~~~py~~e~sqg~l~~i~e~q~~ia 221 (985)
...+.+.+.++..++... + ++.|..+ ...|+.+.+.+.+. +.....|++.+ | ..++++.+|
T Consensus 18 ~~~~~~~~~~l~~~~~~i-~-l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~-----G----~~~lr~~ia 86 (422)
T 3d6k_A 18 REEVTAKYAELKAKNLSL-D-LTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLL-----G----IADIRELWA 86 (422)
T ss_dssp CHHHHHHHHHHHHTTCCE-E-CCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSS-----C----CHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCeE-e-CCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCC-----C----CHHHHHHHH
Confidence 345667777777655422 2 3555444 23444443333322 11233454321 1 234778999
Q ss_pred HhhCCCCcceeeccchHHHH--HHHHHHhhhhc---C-------CCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc-
Q 001990 222 DLTGLPMSNASLLDEGTAAA--EAMAMCNNIQK---G-------KKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL- 288 (985)
Q Consensus 222 ~L~g~~~~~~sl~~~~ta~~--ea~~~a~~~~~---~-------~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~- 288 (985)
+++|.++.++.+++|++.++ ..++.++. .. + .+++|+++...|+.+...++. .|.+++.++.
T Consensus 87 ~~~~~~~~~i~~t~G~~~al~l~~~~~~l~-~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~----~g~~~~~v~~~ 161 (422)
T 3d6k_A 87 EALGLPADLVVAQDGSSLNIMFDLISWSYT-WGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEH----FGFEMINVPMT 161 (422)
T ss_dssp HHHTCCGGGEEECSSCHHHHHHHHHHHHHH-HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHH----HTCEEEEEEEE
T ss_pred HHhCCChhHEEEecchHHHHHHHHHHHHhc-CcccccccccccCCCCEEEEeCCccHHHHHHHHH----cCCEEEecCCC
Confidence 99999988998889888765 33333332 21 0 135899999999999887754 3777766643
Q ss_pred ------hhhhc-cCC-CEeEEE-EEcC-CCCeeeccHH---HHHHHHH-hCCcEEEEEeccccc-cCCC------C----
Q 001990 289 ------KDIDY-KSG-DVCGVL-VQYP-GTEGEVLDYG---DFIKNAH-ANGVKVVMATDLLAL-TILK------P---- 343 (985)
Q Consensus 289 ------~~l~~-l~~-~t~~V~-v~~p-n~~G~i~dl~---~I~~~a~-~~galliV~a~~~al-g~l~------~---- 343 (985)
+++++ +++ ++++|+ +.+| |++|.+.+.+ +|+++|+ ++|+++++| +..+. +... +
T Consensus 162 ~~g~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~D-e~y~~~~~~~~~~~~~~~~~~ 240 (422)
T 3d6k_A 162 DEGPDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWD-NAYALHTLSDEFPIVHNVIEF 240 (422)
T ss_dssp TTEECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEE-CTTTTCBSSSCCCCCCCHHHH
T ss_pred CCCCCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEE-CCccccccCCCCCCCcChhhH
Confidence 45665 654 789888 4566 6899998765 7888888 899999995 33331 1111 1
Q ss_pred ---CCcccceEEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCC
Q 001990 344 ---PGELGADIVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 344 ---p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsn 419 (985)
.+..+.+++++|. |. +.| |-.+|++++++++++.+... ++ .. +
T Consensus 241 ~~~~~~~~~~i~~~S~SK~-~~~----GlriG~~~~~~~l~~~l~~~-------------------------~~-~~--~ 287 (422)
T 3d6k_A 241 AQAAGNPNRFWFMSSTSKI-THA----GSGVSFFASSKENIEWYASH-------------------------AN-VR--G 287 (422)
T ss_dssp HHHTTCTTCEEEEEESTTT-SCT----TSSCEEEECCHHHHHHHHHH-------------------------HH-HH--C
T ss_pred hhccCCCCcEEEEcChhhh-cCc----ccceEEEEeCHHHHHHHHHH-------------------------HH-hh--c
Confidence 1234668888887 75 433 33479999988877655100 00 00 1
Q ss_pred ccchhHHHHHHHHHHHHHcCc-----chHHHHHHHHHHHHHHHHHHHh----cCCCEEEcCCCCcceEEEecCC--HHHH
Q 001990 420 ICTAQALLANMAAMYAVYHGP-----EGLKTIAQRVHGLAGTFALGLK----KLGTVEVQGLPFFDTVKVKCAD--AHAI 488 (985)
Q Consensus 420 i~t~~~l~a~~aa~y~~~~g~-----~Gl~~i~~~~~~~a~~l~~~L~----~~g~~~~~~~~~~~~~~i~~~~--~~~l 488 (985)
.+++. + +..++. ..+.. +-++++.++..++.+++.+.|. ++|++++..+....-+.+.++. ..++
T Consensus 288 ~~~~~-~-~q~a~~--~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~ 363 (422)
T 3d6k_A 288 IGPNK-L-NQLAHA--QFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPGTASRV 363 (422)
T ss_dssp SCCCH-H-HHHHHH--HHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTTCHHHH
T ss_pred CCCCH-H-HHHHHH--HHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCCCHHHH
Confidence 11111 1 112222 22222 1244445555555555555554 3443665432111123344443 6778
Q ss_pred HHHHHHcCceeee----e------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 489 ASAAYKIEMNLRV----V------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 489 ~~~L~~~Gi~~~~----~------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.+.|.++||.+.. . ..+.+|+|++. +++++++++++.|..
T Consensus 364 ~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~~~-~~~e~i~~~~~~l~~ 413 (422)
T 3d6k_A 364 VELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSL-PPVAELEVAMDGFAT 413 (422)
T ss_dssp HHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSS-SCHHHHHHHHHHHHH
T ss_pred HHHHHHCCeEEEcCccccCCCCCCCCCeEEEecCC-CCHHHHHHHHHHHHH
Confidence 8889999998754 1 13789999998 899999999999974
No 423
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.34 E-value=1.1e-11 Score=142.64 Aligned_cols=298 Identities=12% Similarity=0.043 Sum_probs=166.8
Q ss_pred hhcHHHHHHHHHHHHHHHhCCC--cc--c-eecChHHHHHHHHHHHHHHHHHhcCCCCCCEEEEcCCCCCCcHHHHHhcC
Q 001990 627 AQGYQEMFNNLGEWLCTITGFD--SF--S-LQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPATAAMCG 701 (985)
Q Consensus 627 ~~G~~~~~~el~~~la~l~G~~--~~--~-~~~~sGa~g~~a~l~air~~~~~~g~~~~~~Vlv~~~~Hg~~~~~~~~~G 701 (985)
.+|..++.+.+.+++....+.. .. . +++.+|++|...++.++..+ .+ |+|+++++.+..+...++..|
T Consensus 71 ~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~------~~-d~Vlv~~P~y~~~~~~~~~~g 143 (405)
T 3k7y_A 71 GNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKML------NV-ETLYVTNPPYINHVNMIESRG 143 (405)
T ss_dssp TSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTT------TC-CEEEEESSCCHHHHHHHHTTT
T ss_pred CCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhc------CC-CEEEEeCCCCHhHHHHHHHcC
Confidence 4576555555555543322221 12 1 44455555443333332210 26 899999987766666788999
Q ss_pred cEEEEEeC-CC-CCCCCHHHHHHHHHhcCCCeEEEEEEcC--CCccccc--cCHHHHHHHHHHcCCEEEEEccccccc-c
Q 001990 702 MKIVSVGT-DA-KGNINIEELRKAAEANRDNLSTLMVTYP--STHGVYE--EGIDEICKIIHDNGGQVYMDGANMNAQ-V 774 (985)
Q Consensus 702 ~~v~~v~~-~~-~g~iDle~L~~~i~~~~~~t~~Vvi~~p--n~~G~i~--~di~eI~~la~~~g~lliVD~a~~~~~-~ 774 (985)
.+++.+|. ++ ++.+|+++|++++++. +++++|+++.| |++|.+- +.+++|+++|+++|+++++|+++..-. .
T Consensus 144 ~~~~~v~~~~~~~~~~d~~~l~~~l~~~-~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~ 222 (405)
T 3k7y_A 144 FNLKYINFFDYNLIDINYDLFLNDLRNI-PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHT 222 (405)
T ss_dssp CEEEEECCEETTTTEECHHHHHHHHHHS-CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSS
T ss_pred CeEEEEeccccccCCcCHHHHHHHHHhC-CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCC
Confidence 99999998 33 4789999999999743 35667777654 7899885 258889999999999999999874111 1
Q ss_pred CCCC---C----CcCCCc-EEEeCCcccccccCCCCCCcceeeee---cccccCcCCCCccccCCCCCCCCCCCCCCCcc
Q 001990 775 GLTS---P----GYIGAD-VCHLNLHKTFCIPHGGGGPGMGPIGV---KKHLAPFLPSHPVVSTGGIPAPEKSQPLGTIA 843 (985)
Q Consensus 775 g~~~---~----g~~g~D-i~~~s~hKtl~~p~g~GGPg~G~l~~---~~~l~~~lpg~~~g~~~~~~~~~~~~~t~~i~ 843 (985)
+... + ...+.. +++.|+.|+|++ .|.++|++++ ++++...+...+.... ...+++.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l----~GlRiG~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~ 290 (405)
T 3k7y_A 223 NLEEDVLLIRKFEEKNIAFSVCQSFSKNMSL----YGERAGALHIVCKNQEEKKIVFNNLCFIV--------RKFYSSPV 290 (405)
T ss_dssp STTGGGHHHHHHHTTTCCEEEEEECTTTSCC----TTTTEEEEEEECSSHHHHHHHHHHHHHHH--------HTTTSSCC
T ss_pred CcccchHHHHHHHhcCCcEEEEeeCCccCCC----ccccceEEEEEeCCHHHHHHHHHHHHHHH--------hcccCCCc
Confidence 1000 0 011222 566788888865 4899999864 3333321110000000 00011111
Q ss_pred cccchhhhHHHHHHHHHHH--hc---hhhHHHHHHHHHHHHHHHHHHHh----c-cCC--eeEcCCCCceeEEEEEEecC
Q 001990 844 AAPWGSALILPISYTYIAM--MG---SKGLTEASKIAILNANYMAKRLE----K-HYP--ILFRGVNGTVAHEFIVDLRG 911 (985)
Q Consensus 844 s~~~g~~~~~~~A~a~l~~--lg---~~gl~~~~~~~~~~a~~l~~~L~----~-~~~--i~~~g~~~~~~~~~vv~~~~ 911 (985)
..++. ++..++.. ++ .+.+++..++..++++++.+.|+ + +.. +.+..+++.++ +.+.+
T Consensus 291 --~~~q~----~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f--~~~~l-- 360 (405)
T 3k7y_A 291 --IHTNR----ILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLF--SFVPL-- 360 (405)
T ss_dssp --HHHHH----HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSE--EECGG--
T ss_pred --HHHHH----HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEE--EecCC--
Confidence 11111 11122221 11 12234445567788889999998 6 321 11112222222 11222
Q ss_pred ccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHHHHH
Q 001990 912 LKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLSLTK 973 (985)
Q Consensus 912 ~~~~~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~i~~ 973 (985)
+. +.+++|.++||.+.. +. ||++.- .++++|+ +++++|+++++
T Consensus 361 -------~~-~~~~~L~~~gV~v~p------~~-Ris~a~-~~~~~i~---~~~~~i~~~~~ 403 (405)
T 3k7y_A 361 -------LA-KIAEHLKTHHIYIIN------NG-RINVSG-ITKNNVD---YIADKICLSLS 403 (405)
T ss_dssp -------GG-GGTTTTTTTTEECCT------TS-EEEGGG-CCTTHHH---HHHHHHHHHHH
T ss_pred -------CH-HHHHHHHHCCEeecC------CC-eEEEec-cCHHHHH---HHHHHHHHHHh
Confidence 22 345667677988642 22 888753 4568899 99999998875
No 424
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.34 E-value=7.4e-11 Score=137.74 Aligned_cols=277 Identities=9% Similarity=0.044 Sum_probs=167.8
Q ss_pred HHHHHHHHHhhC-CCCcceeeccchHHHHHHHHHHhh-hhc---------C-CCCEEEEcCC-CChhHHHHHH-------
Q 001990 214 LNFQTMIADLTG-LPMSNASLLDEGTAAAEAMAMCNN-IQK---------G-KKKTFIIASN-CHPQTIDICI------- 273 (985)
Q Consensus 214 ~e~q~~ia~L~g-~~~~~~sl~~~~ta~~ea~~~a~~-~~~---------~-~g~~Vlv~~~-~h~s~~~~~~------- 273 (985)
.++.+.++++++ .+..++.+++|||.++++++.+.+ +.. + +|++||+.+. -|+.+...+.
T Consensus 104 ~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~ 183 (449)
T 2cjg_A 104 ARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPT 183 (449)
T ss_dssp HHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchh
Confidence 456678899986 445578888999999988765332 221 1 2789998885 4543332211
Q ss_pred --HhhcCCCeEEEEeCchh------------------hhc-c---CCCEeEEEEEcC-CCCeeecc----HHHHHHHHHh
Q 001990 274 --TRADGFDIKVVVSDLKD------------------IDY-K---SGDVCGVLVQYP-GTEGEVLD----YGDFIKNAHA 324 (985)
Q Consensus 274 --~~a~~~gi~v~~~~~~~------------------l~~-l---~~~t~~V~v~~p-n~~G~i~d----l~~I~~~a~~ 324 (985)
.......-.+.+++.++ |++ + ++++++|++..+ |.+|.+.+ +++|.++|++
T Consensus 184 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~ 263 (449)
T 2cjg_A 184 ITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDE 263 (449)
T ss_dssp HHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHH
T ss_pred hcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHH
Confidence 00001112455554332 666 5 468888887654 67898777 9999999999
Q ss_pred CCcEEEEEecccc-ccCCCCC---C--cccceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCc
Q 001990 325 NGVKVVMATDLLA-LTILKPP---G--ELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKP 398 (985)
Q Consensus 325 ~galliV~a~~~a-lg~l~~p---~--~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~ 398 (985)
+|+++++| +..+ +|..... . ....|+++. +|+| | +|++++++++.+.+.+...+ .+
T Consensus 264 ~g~lli~D-Ev~~g~g~~g~~~~~~~~~~~~di~t~-sK~l--~-------iG~~~~~~~~~~~l~~~~~~-----~~-- 325 (449)
T 2cjg_A 264 FDALLIFD-EVQTGCGLTGTAWAYQQLDVAPDIVAF-GKKT--Q-------VCGVMAGRRVDEVADNVFAV-----PS-- 325 (449)
T ss_dssp TTCEEEEE-CTTTTTTTTSSSSTHHHHTCCCSEEEE-CGGG--S-------SEEEEECGGGGGSTTCTTTS-----TT--
T ss_pred CCcEEEEe-ccccCCCccCcceeecccCCCceEEEe-cCcc--c-------EEEEEECHHHhhhhhhcccC-----Cc--
Confidence 99999995 3333 4322111 1 134687654 3877 4 46788888887765321110 00
Q ss_pred ceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcC----CC-EEEcCCC
Q 001990 399 ALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GT-VEVQGLP 473 (985)
Q Consensus 399 ~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~-~~~~~~~ 473 (985)
+...|.+. ++.+..+..+++ ..+.. +++.++..++.+++++.|+++ +. +.... +
T Consensus 326 --------------~~~~t~~~-n~~~~~aa~aal--~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~-~ 384 (449)
T 2cjg_A 326 --------------RLNSTWGG-NLTDMVRARRIL--EVIEA---EGLFERAVQHGKYLRARLDELAADFPAVVLDPR-G 384 (449)
T ss_dssp --------------SSCCSSSS-CHHHHHHHHHHH--HHHHH---HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEE-E
T ss_pred --------------ccccCCCC-CHHHHHHHHHHH--HHHHh---ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEe-e
Confidence 00112111 112222333333 22222 345677788888999888764 21 22111 1
Q ss_pred CcceEEEecCC---HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 474 FFDTVKVKCAD---AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 474 ~~~~~~i~~~~---~~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
...-+.+.+++ ..++.++|.++||.+.....+.+|++++..+|++|++++++.|..
T Consensus 385 ~g~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g~~~iRi~~~~~~t~e~i~~~l~~l~~ 443 (449)
T 2cjg_A 385 RGLMCAFSLPTTADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRS 443 (449)
T ss_dssp ETTEEEEECSSHHHHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred ccEEEEEEECChHHHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 11124455554 678999999999988765568999999999999999999999974
No 425
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.32 E-value=8.9e-11 Score=134.14 Aligned_cols=272 Identities=11% Similarity=0.025 Sum_probs=162.8
Q ss_pred HHHHHHHHhhCC------CCc--ceeeccchHHHHHHHH--HHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001990 215 NFQTMIADLTGL------PMS--NASLLDEGTAAAEAMA--MCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 215 e~q~~ia~L~g~------~~~--~~sl~~~~ta~~ea~~--~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~ 284 (985)
++++.+|++++. ++. ++.+++|+|.+++.++ ++. .. +||+|+++...|+.+...++. .|.+++
T Consensus 74 ~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~-~~--~gd~vl~~~p~~~~~~~~~~~----~g~~~~ 146 (397)
T 3fsl_A 74 CYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKR-YF--PESGVWVSDPTWENHVAIFAG----AGFEVS 146 (397)
T ss_dssp HHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHH-HC--TTCCEEEESSCCHHHHHHHHH----TTCCEE
T ss_pred HHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHh-cC--CCCeEEEeCCCchhHHHHHHH----cCCceE
Confidence 456677777643 445 6788899998888774 222 23 789999999999998887754 477777
Q ss_pred EeCc----------hhhhc-cC---CCEeEEEEEcC-CCCeee---ccHHHHHHHHHhCCcEEEEEeccccccCCCC---
Q 001990 285 VSDL----------KDIDY-KS---GDVCGVLVQYP-GTEGEV---LDYGDFIKNAHANGVKVVMATDLLALTILKP--- 343 (985)
Q Consensus 285 ~~~~----------~~l~~-l~---~~t~~V~v~~p-n~~G~i---~dl~~I~~~a~~~galliV~a~~~alg~l~~--- 343 (985)
.++. +++++ +. ++++++++.+| |.+|.+ +++++|+++|+++|+++++|. ..+......
T Consensus 147 ~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De-~~~~~~~~~~~~ 225 (397)
T 3fsl_A 147 TYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDI-AYQGFGAGMEED 225 (397)
T ss_dssp EECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEE-SCTTSSSCTTGG
T ss_pred EEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEec-CchhhccCcccc
Confidence 7654 34554 54 67888888888 689988 467799999999999999953 222211110
Q ss_pred -------CCcccceEEEecC-ccccccCCCCCCceEEEEE---chhhHhcCCCceeeeeecCCCCcceEEeccccccccc
Q 001990 344 -------PGELGADIVVGSA-QRFGVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIR 412 (985)
Q Consensus 344 -------p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~r 412 (985)
+...+-+++++|. |.++.| |-.+|++.+ ++++++.+-.. + .+..
T Consensus 226 ~~~~~~~~~~~~~~i~~~S~SK~~~~~----G~riG~~~~~~~~~~~~~~~~~~-----------------~---~~~~- 280 (397)
T 3fsl_A 226 AYAIRAIASAGLPALVSNSFSKIFSLY----GERVGGLSVMCEDAEAAGRVLGQ-----------------L---KATV- 280 (397)
T ss_dssp GHHHHHHHHTTCCEEEEEECTTTTTCG----GGCCEEEEEECSSHHHHHHHHHH-----------------H---HHHH-
T ss_pred cHHHHHHHhcCCCEEEEecccccccCc----CCCeeEEEEecCCHHHHHHHHHH-----------------H---HHHH-
Confidence 0123456778886 877533 234688864 23333322000 0 0000
Q ss_pred ccccCCCccchhHHHHHHHHHH-HHH--cCcchHHHHHHHHHHHHHHHHHHHhcCC---CEEEcCCCCcceEEE-ecCCH
Q 001990 413 RDKATSNICTAQALLANMAAMY-AVY--HGPEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQGLPFFDTVKV-KCADA 485 (985)
Q Consensus 413 re~atsni~t~~~l~a~~aa~y-~~~--~g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~~~~~i-~~~~~ 485 (985)
| ..+++. +.....+..+.+- ..+ ...+.++++.++..++.+++.+.|++++ ++++.... ..-+.+ ..+ .
T Consensus 281 ~-~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~-~ 356 (397)
T 3fsl_A 281 R-RNYSSP-PNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQ-RGMFSYTGLS-A 356 (397)
T ss_dssp H-TTTSSC-CSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHHHC-CSSEEECCCC-H
T ss_pred H-hccCCC-CHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeecCC-ceEEEecCCC-H
Confidence 0 011111 1111111111110 000 0134577888889999999999998863 25443111 111222 222 5
Q ss_pred HHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001990 486 HAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 486 ~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~ 528 (985)
..+.+.|.++||.+.. .+ |+++... ++++|++++++|.
T Consensus 357 ~~~~~~l~~~gi~v~~--g~--Ris~~~~-~~~~i~~~~~~l~ 394 (397)
T 3fsl_A 357 AQVDRLREEFGVYLIA--SG--RMCVAGL-NTANVQRVAKAFA 394 (397)
T ss_dssp HHHHHHHHTTCEECCT--TC--EEEGGGC-CTTTHHHHHHHHH
T ss_pred HHHHHHHHhCCEEECC--CC--eEEEEec-CHhhHHHHHHHHH
Confidence 6677778888998864 22 8898754 4577999999886
No 426
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.31 E-value=3.1e-11 Score=138.85 Aligned_cols=272 Identities=13% Similarity=0.021 Sum_probs=165.5
Q ss_pred HHHHHHHHHhh-CC-----CCcceee--ccchHHHHHHHHHHhh-hhcCCC-----CEEEEcCCCChhHHHHHHHhhcCC
Q 001990 214 LNFQTMIADLT-GL-----PMSNASL--LDEGTAAAEAMAMCNN-IQKGKK-----KTFIIASNCHPQTIDICITRADGF 279 (985)
Q Consensus 214 ~e~q~~ia~L~-g~-----~~~~~sl--~~~~ta~~ea~~~a~~-~~~~~g-----~~Vlv~~~~h~s~~~~~~~~a~~~ 279 (985)
.++++.+|+++ +. ++.++.+ +.|||.+++.++.... +. +| |+|+++...|+.+...++. .
T Consensus 77 ~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~--~g~~~~~d~Vl~~~p~y~~~~~~~~~----~ 150 (412)
T 1ajs_A 77 AEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWY--NGTNNKDTPVYVSSPTWENHNGVFTT----A 150 (412)
T ss_dssp HHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHS--SSSSCCCSCEEEEESCCTHHHHHHHH----T
T ss_pred HHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhC--cCcCCCCCeEEEcCCCcHHHHHHHHH----c
Confidence 35677888888 53 4567888 9999988887753222 23 67 8999999999998877654 4
Q ss_pred CeE-EEEeCc----------hhhhc-cC---CCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEeccccccC
Q 001990 280 DIK-VVVSDL----------KDIDY-KS---GDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTI 340 (985)
Q Consensus 280 gi~-v~~~~~----------~~l~~-l~---~~t~~V~v~~p-n~~G~i~---dl~~I~~~a~~~galliV~a~~~alg~ 340 (985)
|.+ ++.++. +++++ +. +++++|++.+| |.+|.+. ++++|+++|+++|+++++|.-...++.
T Consensus 151 g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~ 230 (412)
T 1ajs_A 151 GFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFAS 230 (412)
T ss_dssp TCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTT
T ss_pred CCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccC
Confidence 555 555443 34554 43 36778878888 6799884 577899999999999999531122221
Q ss_pred CC---C---CCcc---c-ceEEEecC-ccccccCCCCCCc--eEEEEE---chhhHhcCCCceeeeeecCCCCcceEEec
Q 001990 341 LK---P---PGEL---G-ADIVVGSA-QRFGVPMGYGGPH--AAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAM 404 (985)
Q Consensus 341 l~---~---p~~~---G-aDi~v~s~-k~lg~P~~~GGP~--~G~l~~---~~~~~~~lp~~~vG~s~d~~g~~~~~l~l 404 (985)
-. . ...+ + -+|++.|. |.++ +|| +|++++ ++++++.+-.. +
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~------~~G~riG~~~~~~~~~~~~~~~~~~-----------------~ 287 (412)
T 1ajs_A 231 GNLEKDAWAIRYFVSEGFELFCAQSFSKNFG------LYNERVGNLTVVAKEPDSILRVLSQ-----------------M 287 (412)
T ss_dssp SCHHHHTHHHHHHHHTTCCEEEEEECTTTSC------CGGGCEEEEEEECSSHHHHHHHHHH-----------------H
T ss_pred CcccccchHHHHHhccCCcEEEEEecccccC------CCCcceEEEEEecCCHHHHHHHHHH-----------------H
Confidence 10 0 0111 2 23777887 7664 234 689998 77644332000 0
Q ss_pred ccccccccccccCCCccchhHHHHHHHHHHHHHcC-----cchHHHHHHHHHHHHHHHHHHHhcCC---CEEEcCCCCcc
Q 001990 405 QTREQHIRRDKATSNICTAQALLANMAAMYAVYHG-----PEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQGLPFFD 476 (985)
Q Consensus 405 ~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g-----~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~~ 476 (985)
... ...+.+..+.....+..+++ .... .+.++++.++..++.+++.+.|+++| ++++.... ..
T Consensus 288 ----~~~--~~~~~~~~~~~~~~a~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~~ 358 (412)
T 1ajs_A 288 ----QKI--VRVTWSNPPAQGARIVARTL--SDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITDQ-IG 358 (412)
T ss_dssp ----HHH--HHTTTSSCCSHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHC-CS
T ss_pred ----HHH--HhcccCCCChHHHHHHHHHH--cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCC-Cc
Confidence 000 01111111112222222222 2110 23678888899999999999999875 34443211 11
Q ss_pred eEEE-ecCCHHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 477 TVKV-KCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 477 ~~~i-~~~~~~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
-+.+ ..+ ...+.+.|.++||.+.. .+|++++. .|++++++++++|..
T Consensus 359 ~~~~~~~~-~~~~~~~l~~~gv~v~~----~~Ris~~~-~~~~~i~~~~~~l~~ 406 (412)
T 1ajs_A 359 MFSFTGLN-PKQVEYLINQKHIYLLP----SGRINMCG-LTTKNLDYVATSIHE 406 (412)
T ss_dssp SEEECCCC-HHHHHHHHHTTCEECCT----TSEEEGGG-CCTTTHHHHHHHHHH
T ss_pred eEEEeCCC-HHHHHHHHHhCCEEecC----CcEEEeee-CCHHHHHHHHHHHHH
Confidence 1222 222 45555666678998864 36999984 489999999999874
No 427
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.31 E-value=1.4e-10 Score=135.87 Aligned_cols=276 Identities=14% Similarity=0.084 Sum_probs=164.8
Q ss_pred HHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhh-hcCCCCE---EEEcCCCChhHHHHHHHhhcCCCeEEEEe---
Q 001990 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI-QKGKKKT---FIIASNCHPQTIDICITRADGFDIKVVVS--- 286 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~-~~~~g~~---Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~--- 286 (985)
.++++.+|+++|.+ ++.+++|||.+.+.++.++.. ...+||+ ||++...|+.+...+.. .|.+++.+
T Consensus 79 ~~l~~~la~~~~~~--~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~----~g~~~~~~~~~ 152 (467)
T 1ax4_A 79 YDLKDKAKELFNYD--YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVEL----NGCKAINIVTE 152 (467)
T ss_dssp HHHHHHHHHHHCCC--EEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHH----TTCEEEECBCG
T ss_pred HHHHHHHHHHcCCC--cEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHHhc----cCCceeccccc
Confidence 45678999999975 477889999888877665431 0015677 88883334766666543 35555533
Q ss_pred ---------------Cchhhhc-cC----CCEeEEEEEcC-CCC-eee---ccHHHHHHHHHhCCcEEEEEeccccc---
Q 001990 287 ---------------DLKDIDY-KS----GDVCGVLVQYP-GTE-GEV---LDYGDFIKNAHANGVKVVMATDLLAL--- 338 (985)
Q Consensus 287 ---------------~~~~l~~-l~----~~t~~V~v~~p-n~~-G~i---~dl~~I~~~a~~~galliV~a~~~al--- 338 (985)
|+++|++ +. ++|++|++++| |.+ |.+ +++++|+++|+++|+++++|. ....
T Consensus 153 ~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De-~~~~~~~ 231 (467)
T 1ax4_A 153 KAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDS-ARFCENA 231 (467)
T ss_dssp GGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEEC-TTHHHHH
T ss_pred ccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEc-hhhhhcc
Confidence 3345555 54 37999999987 677 776 467899999999999999953 2222
Q ss_pred --------cCCC-CCCc------ccceEEEecC-ccccccCCCCCCceEEEEEc-h-hhHhcCCCceeeeeecCCCCcce
Q 001990 339 --------TILK-PPGE------LGADIVVGSA-QRFGVPMGYGGPHAAFLATS-Q-EYKRMMPGRIVGVSIDSSGKPAL 400 (985)
Q Consensus 339 --------g~l~-~p~~------~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~-~-~~~~~lp~~~vG~s~d~~g~~~~ 400 (985)
+... ++.+ .++|+++.+. |.++.|. .|+++.+ + ++.+.+...... . .+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~------Gg~~~~~d~~~l~~~~~~~~~~---~-~~---- 297 (467)
T 1ax4_A 232 YFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNI------GGLVAIRDNEEIFTLARQRCVP---M-EG---- 297 (467)
T ss_dssp HHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSS------CEEEEESSCHHHHHHHHHHHHH---H-TC----
T ss_pred hhccccccccCCCchhhhhhhhccccceEEEeccccCCCCc------ceEEEeCCHHHHHHHHHhhccc---c-cc----
Confidence 2111 1122 2489888887 7765432 2678777 5 666543100000 0 00
Q ss_pred EEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEEE
Q 001990 401 RVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVKV 480 (985)
Q Consensus 401 ~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~i 480 (985)
. ...++.+. ....++.+++ ..+.. ++..++..++.+++++.|++.| +++..+....-+.+
T Consensus 298 ---~--------~~~~~~~~---~~~~a~~~~l--~~~~~---~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~ 357 (467)
T 1ax4_A 298 ---F--------VTYGGLAG---RDMAAMVQGL--EEGTE---EEYLHYRIGQVKYLGDRLREAG-IPIQYPTGGHAVFV 357 (467)
T ss_dssp ---S--------TTTTTCCH---HHHHHHHHHH--HHTTC---HHHHHHHHHHHHHHHHHHHHTT-CCBCSSCCSSEEEE
T ss_pred ---c--------cccCCccc---hHHHHHHHHH--HHhhh---hhHHHHHHHHHHHHHHHHHhCC-CCcccCCCceEEEE
Confidence 0 01111111 1122222222 22211 1223333467788999998765 76653222222333
Q ss_pred e-------cC--C--HHHHHHHH-HHcCceeeee-----------c------CCeEEEEecc-CCCHHHHHHHHHHHhCC
Q 001990 481 K-------CA--D--AHAIASAA-YKIEMNLRVV-----------D------SNTVTASFDE-TTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 481 ~-------~~--~--~~~l~~~L-~~~Gi~~~~~-----------~------~~~lris~~~-~~t~edid~ll~~l~~~ 530 (985)
. .+ + ..++.++| .++||.+... . .+.+|+|+.. .+|++|+++++++|...
T Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~ 437 (467)
T 1ax4_A 358 DCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGL 437 (467)
T ss_dssp ESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTT
T ss_pred ehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHH
Confidence 4 32 2 67899999 8889987541 0 2689999994 48999999999999854
No 428
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.31 E-value=1.6e-10 Score=134.16 Aligned_cols=277 Identities=13% Similarity=0.089 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHhhCCCC-cceeeccchHHHHHHHHHHhh-hhcCCCCEEEEcC-CCChhHHHHHHHhhcC-------C-
Q 001990 211 ESLLNFQTMIADLTGLPM-SNASLLDEGTAAAEAMAMCNN-IQKGKKKTFIIAS-NCHPQTIDICITRADG-------F- 279 (985)
Q Consensus 211 ~~i~e~q~~ia~L~g~~~-~~~sl~~~~ta~~ea~~~a~~-~~~~~g~~Vlv~~-~~h~s~~~~~~~~a~~-------~- 279 (985)
+...++++.++++++... ..+.+++||+.++++++.+.+ .. ++++||+.+ ..|..+...+...... +
T Consensus 86 ~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 163 (439)
T 3dxv_A 86 APAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKAT--GRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKAD 163 (439)
T ss_dssp HHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHH--SCCEEEEETTCCCCSSHHHHCC-------------
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHh--CCCEEEEECCCCCCCcHHHHhhcCCCchhhccccC
Confidence 344567789999996555 578899999999888876532 23 456666555 6666665554210000 0
Q ss_pred --CeEEEEeC-------------chhhhc-c----CCCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEec
Q 001990 280 --DIKVVVSD-------------LKDIDY-K----SGDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATD 334 (985)
Q Consensus 280 --gi~v~~~~-------------~~~l~~-l----~~~t~~V~v~~p-n~~G~i~d----l~~I~~~a~~~galliV~a~ 334 (985)
...+..++ +++|++ + .+++++|++..+ +..|.+.+ +++|.++|+++|+++++| +
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D-E 242 (439)
T 3dxv_A 164 GLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCD-E 242 (439)
T ss_dssp CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEE-C
T ss_pred CCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe-c
Confidence 00112222 345655 5 567888887765 56888888 999999999999999995 3
Q ss_pred ccc-ccCCCCC---Cc--ccceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEeccccc
Q 001990 335 LLA-LTILKPP---GE--LGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTRE 408 (985)
Q Consensus 335 ~~a-lg~l~~p---~~--~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre 408 (985)
.++ ++..... .. ...|++ .-+|.|+. |-.+|++++++++++.+....
T Consensus 243 ~~~g~g~~g~~~~~~~~~~~~di~-s~sK~~~~-----G~riG~~~~~~~~~~~~~~~~--------------------- 295 (439)
T 3dxv_A 243 VKVGLARSGRLHCFEHEGFVPDIL-VLGKGLGG-----GLPLSAVIAPAEILDCASAFA--------------------- 295 (439)
T ss_dssp TTTCTTTTSSSSGGGGTTCCCSEE-EECGGGGT-----TSCCEEEEEEHHHHTSCSSSS---------------------
T ss_pred cccCCCcCchhhHHHhcCCCCCEE-EEcchhcC-----CcceEEEEECHHHHhhhcCCC---------------------
Confidence 332 3211111 12 236776 22488862 334689999998887662110
Q ss_pred ccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcC----CCEEEc-CCCCcceEEEec-
Q 001990 409 QHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQ-GLPFFDTVKVKC- 482 (985)
Q Consensus 409 ~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~-~~~~~~~~~i~~- 482 (985)
.+.++ .++....+..+++ ..+.. +++.++..++.+++++.|+++ +.+... +...+-.+.+..
T Consensus 296 ------~~~t~-~~~~~~~aa~aal--~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 363 (439)
T 3dxv_A 296 ------MQTLH-GNPISAAAGLAVL--ETIDR---DDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCD 363 (439)
T ss_dssp ------CCTTT-TCHHHHHHHHHHH--HHHHH---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEE
T ss_pred ------cCCCc-ccHHHHHHHHHHH--HHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecC
Confidence 01112 2222222222332 22222 334566666777777777653 223222 111121222210
Q ss_pred -----CC---HHHHHHHHHHcCceeeeec--CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 483 -----AD---AHAIASAAYKIEMNLRVVD--SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 -----~~---~~~l~~~L~~~Gi~~~~~~--~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+. ..++.+.|.++||.+.... ++.+|++++..+|++|+++++++|..
T Consensus 364 ~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~ 420 (439)
T 3dxv_A 364 RQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDR 420 (439)
T ss_dssp TTTTEECHHHHHHHHHHHHHHTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22 6788999999999887653 48999999999999999999999974
No 429
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.30 E-value=1.6e-10 Score=136.60 Aligned_cols=276 Identities=12% Similarity=0.110 Sum_probs=168.8
Q ss_pred hHHHHHHHHHHHHHHHhh-CC--CCcceeeccchHHHHHHHHHHhhhhcCCC----CEEEEcCCCChhHHHHHHHhhcCC
Q 001990 207 QGRLESLLNFQTMIADLT-GL--PMSNASLLDEGTAAAEAMAMCNNIQKGKK----KTFIIASNCHPQTIDICITRADGF 279 (985)
Q Consensus 207 qg~l~~i~e~q~~ia~L~-g~--~~~~~sl~~~~ta~~ea~~~a~~~~~~~g----~~Vlv~~~~h~s~~~~~~~~a~~~ 279 (985)
+|..+.-.+..+.+.+.. |. ++.++.+++|++.++..++.++. . +| |+|+++.-.|+.+...++. .
T Consensus 129 ~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~-~--~gd~~~d~Vlv~~p~y~~~~~~~~~----~ 201 (498)
T 3ihj_A 129 QGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILV-S--GGGKSRTGVMIPIPQYPLYSAVISE----L 201 (498)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHC-C--CCGGGSEEEEEEESCCTHHHHHHHH----T
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHc-C--CCCCCCCEEEEeCCCchhHHHHHHH----c
Confidence 343333333334444444 34 56789899999988877766543 2 44 5999999999999888754 4
Q ss_pred CeEEEEeCc----------hhhhc-cCC-----CEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEecccccc
Q 001990 280 DIKVVVSDL----------KDIDY-KSG-----DVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALT 339 (985)
Q Consensus 280 gi~v~~~~~----------~~l~~-l~~-----~t~~V~v~~p-n~~G~i~---dl~~I~~~a~~~galliV~a~~~alg 339 (985)
|.+++.++. ++|++ +.+ ++++|++.+| |++|.+. ++++|+++|+++|+++++| +..+..
T Consensus 202 g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~D-e~y~~~ 280 (498)
T 3ihj_A 202 DAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLAD-EVYQDN 280 (498)
T ss_dssp TCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE-CTTTTC
T ss_pred CCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEE-cCcccc
Confidence 777776643 34554 433 5999999998 7899884 5788999999999999995 343332
Q ss_pred CCCC---CC-------ccc------c-eEEEecC-ccc-cccCCCCCCceEEEEE---chhhHhcCCCceeeeeecCCCC
Q 001990 340 ILKP---PG-------ELG------A-DIVVGSA-QRF-GVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGK 397 (985)
Q Consensus 340 ~l~~---p~-------~~G------a-Di~v~s~-k~l-g~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~s~d~~g~ 397 (985)
.... .. +++ . -|+++|. |.| |.| |+ .+|++.+ ++++++.+-
T Consensus 281 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~-G~---R~G~~~~~~~~~~l~~~l~------------- 343 (498)
T 3ihj_A 281 VYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGEC-GY---RGGYMEVINLHPEIKGQLV------------- 343 (498)
T ss_dssp BCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCS-SS---CCEEEEEESCCHHHHHHHH-------------
T ss_pred ccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCc-cc---ceEEEEEecCCHHHHHHHH-------------
Confidence 2211 11 112 1 1567776 888 333 33 3488874 566655430
Q ss_pred cceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCc------------chHHHHHHHHHHHHHHHHHHHhcCC
Q 001990 398 PALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGP------------EGLKTIAQRVHGLAGTFALGLKKLG 465 (985)
Q Consensus 398 ~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~------------~Gl~~i~~~~~~~a~~l~~~L~~~g 465 (985)
. . ...+.|++......+++ .+.. +-++++.++..++++++++.|+++.
T Consensus 344 ~---------------~-~~~~~~~~~~~q~a~~~----~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~ 403 (498)
T 3ihj_A 344 K---------------L-LSVRLCPPVSGQAAMDI----VVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVP 403 (498)
T ss_dssp H---------------H-HHHSCCCCHHHHHHHHH----HTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred H---------------H-HhccCCCCHHHHHHHHH----HhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 0 0 00223433332222221 2211 1135666778899999999999983
Q ss_pred CEEEcCC--CCcceEEEecC----------C--HHH--HHHHHHHcCceeeee-------cCCeEEEEeccCCCHHHHHH
Q 001990 466 TVEVQGL--PFFDTVKVKCA----------D--AHA--IASAAYKIEMNLRVV-------DSNTVTASFDETTTLEDVDK 522 (985)
Q Consensus 466 ~~~~~~~--~~~~~~~i~~~----------~--~~~--l~~~L~~~Gi~~~~~-------~~~~lris~~~~~t~edid~ 522 (985)
|+++... .++.-+.+..+ + ..+ +.+.|.++||.+... ..+.+|+++. .+++++++
T Consensus 404 g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~--~~~e~l~~ 481 (498)
T 3ihj_A 404 GIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTIL--PPVEKLKT 481 (498)
T ss_dssp TEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECC--SCHHHHHH
T ss_pred CcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeC--CCHHHHHH
Confidence 3887642 22211223322 1 233 355566789987542 1358999994 78999999
Q ss_pred HHHHHhC
Q 001990 523 LFIVFAG 529 (985)
Q Consensus 523 ll~~l~~ 529 (985)
+++.|..
T Consensus 482 ~i~~L~~ 488 (498)
T 3ihj_A 482 VLQKVKD 488 (498)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999874
No 430
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.28 E-value=1.3e-10 Score=134.20 Aligned_cols=270 Identities=12% Similarity=0.042 Sum_probs=162.0
Q ss_pred HHHHHHHHhhCC------CCc--ceeeccchHHHHHHHH--HHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001990 215 NFQTMIADLTGL------PMS--NASLLDEGTAAAEAMA--MCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 215 e~q~~ia~L~g~------~~~--~~sl~~~~ta~~ea~~--~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~ 284 (985)
++++.++++++. ++. ++.++.|+|.+++.++ +++ .. +||+|++++..|+.+...++. .|.+++
T Consensus 96 ~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~-~~--~gd~Vlv~~p~~~~~~~~~~~----~g~~~~ 168 (420)
T 4f4e_A 96 AYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRT-LN--PKAKVAISDPSWENHRALFDM----AGFEVV 168 (420)
T ss_dssp HHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHH-HC--TTCCEEEEESCCHHHHHHHHH----TTCCEE
T ss_pred HHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHH-hC--CCCEEEEeCCCcHhHHHHHHH----cCCeEE
Confidence 355666666633 334 6788899998888773 332 23 789999999999998887754 466666
Q ss_pred EeCc----------hhhhc-cC---CCEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEeccccccCCCC---
Q 001990 285 VSDL----------KDIDY-KS---GDVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILKP--- 343 (985)
Q Consensus 285 ~~~~----------~~l~~-l~---~~t~~V~v~~p-n~~G~i~---dl~~I~~~a~~~galliV~a~~~alg~l~~--- 343 (985)
.++. +++++ +. ++++++++.+| |.+|.+. ++++|+++|+++|+++++|. ..+......
T Consensus 169 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De-~y~~~~~~~~~~ 247 (420)
T 4f4e_A 169 AYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDI-AYQGFGESIEAD 247 (420)
T ss_dssp EEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEE-SCTTSSSCTTGG
T ss_pred EeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEcc-ccccccCCcchh
Confidence 6544 34555 54 67888888888 7899884 57899999999999999953 222111110
Q ss_pred -------CCcccceEEEecC-ccccccCCCCCCceEEEEE---chhhHhcCCCceeeeeecCCCCcceEEeccccccccc
Q 001990 344 -------PGELGADIVVGSA-QRFGVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIR 412 (985)
Q Consensus 344 -------p~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~r 412 (985)
++..+-+++++|. |.|+.| |-.+|++++ ++++++.+-.. + +...
T Consensus 248 ~~~~~~~~~~~~~~i~~~S~SK~~~~~----G~RiG~~~~~~~~~~~~~~~~~~-----------------~----~~~~ 302 (420)
T 4f4e_A 248 AAAVRLFAAANLNVFVSSSFSKSFSLY----GERVGALSIITDSKDEAARVLSQ-----------------L----KRVI 302 (420)
T ss_dssp GHHHHHHHHTTCCEEEEEECTTTTTCG----GGCEEEEEEECSSHHHHHHHHHH-----------------H----HHHH
T ss_pred hHHHHHHHhcCCCEEEEEeCCccCcCc----CCCcEEEEEEcCCHHHHHHHHHH-----------------H----HHHH
Confidence 1134567888887 877532 223688764 33443321000 0 0000
Q ss_pred ccccCCCccchhHHHHHHHHHHHHHc-----CcchHHHHHHHHHHHHHHHHHHHhcCC---CEEEcCCCCcceEEE-ecC
Q 001990 413 RDKATSNICTAQALLANMAAMYAVYH-----GPEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQGLPFFDTVKV-KCA 483 (985)
Q Consensus 413 re~atsni~t~~~l~a~~aa~y~~~~-----g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~~~~~i-~~~ 483 (985)
| ..+++.++ ... .+++.++... ..+.++++.++..++.+++.+.|++++ ++++..+ ...-+.+ ..+
T Consensus 303 ~-~~~~~~~~-~~~--~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~g~~~~~~~~ 377 (420)
T 4f4e_A 303 R-TNYSNPPT-HGG--AIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFINA-QRGMFSYSGLT 377 (420)
T ss_dssp H-TTTSSCCS-HHH--HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHH-SCSSEEECCCC
T ss_pred h-cccCCCCH-HHH--HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeECC-CccEEEEeCCC
Confidence 0 11222111 111 1111111110 023467888889999999999999872 2443311 1111222 222
Q ss_pred CHHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001990 484 DAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 484 ~~~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~ 528 (985)
...+.+.|.++||.+... .|+|+... +++++++++++|.
T Consensus 378 -~~~~~~~l~~~gI~v~~~----~Ris~~~~-~~~~i~~~~~~l~ 416 (420)
T 4f4e_A 378 -SAQVDRLREEFGIYAVST----GRICVAAL-NTRNLDVVANAIA 416 (420)
T ss_dssp -HHHHHHHHHHHCEECCTT----SEEEGGGC-CTTTHHHHHHHHH
T ss_pred -HHHHHHHHHhCCEEecCC----CeEEEecC-CHHHHHHHHHHHH
Confidence 566777778889988652 38998754 5566999999886
No 431
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.28 E-value=4.9e-10 Score=129.32 Aligned_cols=274 Identities=13% Similarity=0.119 Sum_probs=162.6
Q ss_pred HHHHHHHHHHhhCCCC-cceeeccchHHHHHHHHH-HhhhhcCCCCEEEEcCC-CChhHHHHHHHhh-c-----CC----
Q 001990 213 LLNFQTMIADLTGLPM-SNASLLDEGTAAAEAMAM-CNNIQKGKKKTFIIASN-CHPQTIDICITRA-D-----GF---- 279 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~-~~~sl~~~~ta~~ea~~~-a~~~~~~~g~~Vlv~~~-~h~s~~~~~~~~a-~-----~~---- 279 (985)
..++++.+|++++.+. .++.+++|++.++++++. +..+. ++ ++|++.+. .|......+.... + .+
T Consensus 86 ~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~-~~-~~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~ 163 (426)
T 1sff_A 86 YLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT-KR-SGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMP 163 (426)
T ss_dssp HHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH-TC-CEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCC
T ss_pred HHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhh-CC-CeEEEECCCcCCCchHhhhhcCCccccccccCCCC
Confidence 4457789999993233 678888999988887765 22223 13 47777664 5555554443210 0 11
Q ss_pred -CeEEEEeC-----------chhhhc-cC-----CCEeEEEEE-cCCCCeeecc----HHHHHHHHHhCCcEEEEEeccc
Q 001990 280 -DIKVVVSD-----------LKDIDY-KS-----GDVCGVLVQ-YPGTEGEVLD----YGDFIKNAHANGVKVVMATDLL 336 (985)
Q Consensus 280 -gi~v~~~~-----------~~~l~~-l~-----~~t~~V~v~-~pn~~G~i~d----l~~I~~~a~~~galliV~a~~~ 336 (985)
++..+.++ +++|++ +. +++++|+++ +++.+|.+.+ +++|.++|+++|+++++| +..
T Consensus 164 ~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~D-e~~ 242 (426)
T 1sff_A 164 GHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIAD-EVQ 242 (426)
T ss_dssp SSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEE-CTT
T ss_pred CCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEe-chh
Confidence 13222222 234554 43 578888775 3445997777 999999999999999995 333
Q ss_pred c-ccCCCCC---Ccc--cceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEeccccccc
Q 001990 337 A-LTILKPP---GEL--GADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQH 410 (985)
Q Consensus 337 a-lg~l~~p---~~~--GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~ 410 (985)
+ ++..... ..+ .+|++.. +|.|+ + |--+|++++++++++.+....
T Consensus 243 ~~~~~~g~~~~~~~~~~~~di~s~-sK~~~-~----GlriG~~~~~~~~~~~l~~~~----------------------- 293 (426)
T 1sff_A 243 SGAGRTGTLFAMEQMGVAPDLTTF-AKSIA-G----GFPLAGVTGRAEVMDAVAPGG----------------------- 293 (426)
T ss_dssp TTTTTTSSSSGGGGTTSCCSEEEE-CGGGG-T----SSCCEEEEEEHHHHTTSCTTS-----------------------
T ss_pred hccCcccchhhhhhcCCCCCEEEE-ccccc-C----CCceEEEEEcHHHHhhhccCC-----------------------
Confidence 3 3211111 122 3777633 38775 1 223589999998877662100
Q ss_pred ccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcC----CCEEEc-CCCCcceEEEec---
Q 001990 411 IRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQ-GLPFFDTVKVKC--- 482 (985)
Q Consensus 411 ~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~-~~~~~~~~~i~~--- 482 (985)
...|.+. ++....++.+++ ..+..+ ++.++..++.+++++.|+++ +.+... +...+ +.+.+
T Consensus 294 ---~~~~~~~-~~~~~~a~~aal--~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~--~~~~~~~~ 362 (426)
T 1sff_A 294 ---LGGTYAG-NPIACVAALEVL--KVFEQE---NLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAM--IAIELFED 362 (426)
T ss_dssp ---BCCSSSS-CHHHHHHHHHHH--HHHHHT---THHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTE--EEEEEBGG
T ss_pred ---cCcCCCC-CHHHHHHHHHHH--HHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEE--EEEEEecC
Confidence 0111111 112222333333 333222 35566777888888887663 212221 11122 33333
Q ss_pred -----CC---HHHHHHHHHHcCceeeeec--CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 483 -----AD---AHAIASAAYKIEMNLRVVD--SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 -----~~---~~~l~~~L~~~Gi~~~~~~--~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+. ..++.++|.++||.+.... ++.+|++++..++++|+++++++|..
T Consensus 363 ~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 419 (426)
T 1sff_A 363 GDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQ 419 (426)
T ss_dssp GCTTSBCHHHHHHHHHHHHHTTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHCCcEEecCCCCCCEEEEECCccCCHHHHHHHHHHHHH
Confidence 22 6789999999999887643 58899999999999999999999974
No 432
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.28 E-value=3e-10 Score=132.90 Aligned_cols=282 Identities=13% Similarity=0.104 Sum_probs=168.1
Q ss_pred HHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhh-h--hc--CCCCEEEEcC-CCChhHHHHHHHhh---------c-
Q 001990 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-I--QK--GKKKTFIIAS-NCHPQTIDICITRA---------D- 277 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~--~~--~~g~~Vlv~~-~~h~s~~~~~~~~a---------~- 277 (985)
.++++.++++++.+...+.+++||+.++++++.+.+ + .+ .++++||+.+ .-|..+...+..-. .
T Consensus 121 ~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 200 (457)
T 3tfu_A 121 ARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTD 200 (457)
T ss_dssp HHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC---------
T ss_pred HHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccC
Confidence 467789999997766678889999999998765433 2 01 1456777655 55655544432100 0
Q ss_pred -CCCeEEEEe--------Cchhhhc-cC---CCEeEEEEEc-C-CCCeeecc----HHHHHHHHHhCCcEEEEEeccc-c
Q 001990 278 -GFDIKVVVS--------DLKDIDY-KS---GDVCGVLVQY-P-GTEGEVLD----YGDFIKNAHANGVKVVMATDLL-A 337 (985)
Q Consensus 278 -~~gi~v~~~--------~~~~l~~-l~---~~t~~V~v~~-p-n~~G~i~d----l~~I~~~a~~~galliV~a~~~-a 337 (985)
..++..... ++++|++ ++ +++++|++.. + |..|.+.+ +++|.++|+++|+++++| +.. .
T Consensus 201 ~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~D-Ev~~g 279 (457)
T 3tfu_A 201 VLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFD-EIATG 279 (457)
T ss_dssp -CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEE-CTTTT
T ss_pred CCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEE-cCccC
Confidence 112333222 2345665 54 6788888876 5 67887765 999999999999999995 222 2
Q ss_pred ccCCCCC---Ccc--cceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEeccccccccc
Q 001990 338 LTILKPP---GEL--GADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIR 412 (985)
Q Consensus 338 lg~l~~p---~~~--GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~r 412 (985)
+|-.... ..+ ..|+++. +|.|++ |...+|++.+++++.+.+... ..+. |
T Consensus 280 ~gr~G~~~a~~~~~~~pdiit~-sK~l~g----G~~~lG~v~~~~~i~~~~~~~-------~~~~--~------------ 333 (457)
T 3tfu_A 280 FGRTGALFAADHAGVSPDIMCV-GKALTG----GYLSLAATLCTADVAHTISAG-------AAGA--L------------ 333 (457)
T ss_dssp TTTTSSSSTHHHHTCCCSEEEE-CGGGGT----TSSCCEEEEEEHHHHHHHHHS-------SSCS--C------------
T ss_pred CccccchhHhHhcCCCceEEEE-ChhhhC----CCcceEEEEEcHHHHHHhhcc-------CCCc--e------------
Confidence 3321111 112 3577633 487742 224578888999887765100 0000 0
Q ss_pred ccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCC---CEEEc-CCCCcceEEEecCC-HHH
Q 001990 413 RDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQ-GLPFFDTVKVKCAD-AHA 487 (985)
Q Consensus 413 re~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~-~~~~~~~~~i~~~~-~~~ 487 (985)
..++++-..+.+..+..+++ ..+..+ ++.++..++.+++++.|+++. ++..+ ....+-.+.+..+. +.+
T Consensus 334 -~~~~t~~~n~~a~aaa~aaL--~~~~~~---~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~l~~~~~~~~ 407 (457)
T 3tfu_A 334 -MHGPTFMANPLACAVSVASV--ELLLGQ---DWRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGVIECDRPVDLAV 407 (457)
T ss_dssp -CCCCTTTTCHHHHHHHHHHH--HHHHTS---CHHHHHHHHHHHHHHHHGGGGGSTTEEEEEECSSCEEEEESSCCCHHH
T ss_pred -eEecCCCcCHHHHHHHHHHH--HHHhhh---HHHHHHHHHHHHHHHHHHHHhcCCCeeeeecCCeEEEEEECCcccHHH
Confidence 01111111112222222332 333233 356667778888998888752 23322 11222223332222 788
Q ss_pred HHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 488 IASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 488 l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+.++|.++||.++.. .+.+|+++....|++|+++++++|..
T Consensus 408 ~~~~l~~~Gv~v~~~-~~~lRi~p~~~~t~eei~~~l~~L~~ 448 (457)
T 3tfu_A 408 ATPAALDRGVWLRPF-RNLVYAMPPYICTPAEITQITSAMVE 448 (457)
T ss_dssp HHHHHHHTTEECCCB-TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCeEEEec-CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 999999999988753 57899999999999999999999974
No 433
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.27 E-value=2.9e-10 Score=131.33 Aligned_cols=267 Identities=16% Similarity=0.131 Sum_probs=164.6
Q ss_pred HHHHHHHHHhhCCC-CcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcC-CCChhHHHHHHH------hhcCC---CeE
Q 001990 214 LNFQTMIADLTGLP-MSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIAS-NCHPQTIDICIT------RADGF---DIK 282 (985)
Q Consensus 214 ~e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~-~~h~s~~~~~~~------~a~~~---gi~ 282 (985)
.++.+.+++++|.+ +.++.+++||+.+++.++.+.+.. .|++||+.+ ..|+.+...+.. +.... ...
T Consensus 89 ~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~--~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (419)
T 2eo5_A 89 LELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNT--GRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPG 166 (419)
T ss_dssp HHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTT--SCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTT
T ss_pred HHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHh--hCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCC
Confidence 45667899999987 667888899998888776543321 378898877 566666555432 10111 112
Q ss_pred EEEeC------------------------chhhh-c-cC-----CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCC
Q 001990 283 VVVSD------------------------LKDID-Y-KS-----GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANG 326 (985)
Q Consensus 283 v~~~~------------------------~~~l~-~-l~-----~~t~~V~v~~p-n~~G~i~d----l~~I~~~a~~~g 326 (985)
++.++ +++|+ + ++ +++++|++... |.+|.+.+ +++|.++|+++|
T Consensus 167 ~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~ 246 (419)
T 2eo5_A 167 VIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYG 246 (419)
T ss_dssp EEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHT
T ss_pred CEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcC
Confidence 33332 23666 6 54 46776666433 45898766 999999999999
Q ss_pred cEEEEEecccc-ccCCCCC---C--cccceEEEecCccccccCCCCC-CceEEEEEchhhHhcCCCceeeeeecCCCCcc
Q 001990 327 VKVVMATDLLA-LTILKPP---G--ELGADIVVGSAQRFGVPMGYGG-PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPA 399 (985)
Q Consensus 327 alliV~a~~~a-lg~l~~p---~--~~GaDi~v~s~k~lg~P~~~GG-P~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~ 399 (985)
+++++| +..+ ++..... . ....|+++. +|+|++ | -.+|+++++++++ .+ ....
T Consensus 247 ~~li~D-E~~~~~g~~g~~~~~~~~~~~~d~~t~-sK~~~~-----G~~riG~~~~~~~~~-~~-~~~~----------- 306 (419)
T 2eo5_A 247 ILLVDD-EVQMGLGRTGKLFAIENFNTVPDVITL-AKALGG-----GIMPIGATIFRKDLD-FK-PGMH----------- 306 (419)
T ss_dssp CEEEEE-CTTTTTTTTSSSSGGGGGTCCCSEEEE-CGGGGT-----TTSCCEEEEEEGGGC-CC----------------
T ss_pred CEEEEe-ccccCCccCcchhhHHhcCCCCCEEEe-cccccC-----CccceEEEEEchHhh-cC-Cccc-----------
Confidence 999995 3333 4322111 1 124576633 388762 3 3468888888765 54 1000
Q ss_pred eEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCCCCcceEE
Q 001990 400 LRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGLPFFDTVK 479 (985)
Q Consensus 400 ~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~~~~~~~~ 479 (985)
.+|.+.. +.+..+..+++ .. ++++.++..++.++|.+.|+++- ..+.+. ..-+.
T Consensus 307 ---------------~~t~~~n-~~~~~aa~aal--~~-----~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~--g~~~~ 360 (419)
T 2eo5_A 307 ---------------SNTFGGN-ALACAIGSKVI--DI-----VKDLLPHVNEIGKIFAEELQGLA-DDVRGI--GLAWG 360 (419)
T ss_dssp -----------------CCCCC-HHHHHHHHHHH--HH-----HHHHHHHHHHHHHHHHHHHTTSS-SEEEEE--TTEEE
T ss_pred ---------------CCCCCCC-HHHHHHHHHHH--HH-----HHHHHHHHHHHHHHHHHHHHHhh-hheEee--eEEEE
Confidence 1111111 12222233332 22 12367788889999999998751 111111 12234
Q ss_pred Eec-C--C-HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 480 VKC-A--D-AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 480 i~~-~--~-~~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+.+ + . +. +.+.|.++||.++...++.+|++++..+|++|+++++++|..
T Consensus 361 i~~~~~~~~~~-~~~~l~~~Gv~v~~~~~~~lRis~~~~~t~e~i~~~l~~l~~ 413 (419)
T 2eo5_A 361 LEYNEKKVRDR-IIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQGLDILKK 413 (419)
T ss_dssp EECSCHHHHHH-HHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEecCccHHH-HHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 555 3 2 55 889999999998775568999999999999999999999973
No 434
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.27 E-value=1.1e-09 Score=127.90 Aligned_cols=275 Identities=13% Similarity=0.112 Sum_probs=157.2
Q ss_pred HHHHHHHHHHhhCCC-CcceeeccchHHHHHHHHH-HhhhhcCCCCEEEEcC-CCChhHHHHHHHhhc------CC----
Q 001990 213 LLNFQTMIADLTGLP-MSNASLLDEGTAAAEAMAM-CNNIQKGKKKTFIIAS-NCHPQTIDICITRAD------GF---- 279 (985)
Q Consensus 213 i~e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~~-a~~~~~~~g~~Vlv~~-~~h~s~~~~~~~~a~------~~---- 279 (985)
..++.+.++++++.+ ...+.+++|||.++++++. +.... ++++||+.+ .-|......+..-.. .+
T Consensus 109 ~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~--g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~ 186 (453)
T 4ffc_A 109 YVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLAT--GRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFA 186 (453)
T ss_dssp HHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH--CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCC
T ss_pred HHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhc--CCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCC
Confidence 345668899998754 3568888999999998874 43333 567888766 455554444321000 01
Q ss_pred -CeEEEEeCc------------------hhhhc-cCC-CEeEEEEEcCC-CCeeecc----HHHHHHHHHhCCcEEEEEe
Q 001990 280 -DIKVVVSDL------------------KDIDY-KSG-DVCGVLVQYPG-TEGEVLD----YGDFIKNAHANGVKVVMAT 333 (985)
Q Consensus 280 -gi~v~~~~~------------------~~l~~-l~~-~t~~V~v~~pn-~~G~i~d----l~~I~~~a~~~galliV~a 333 (985)
++....++. +++++ +++ ++++|++...+ ..|.+.+ +++|.++|+++|+++++|
T Consensus 187 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~D- 265 (453)
T 4ffc_A 187 PEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIAD- 265 (453)
T ss_dssp SSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEE-
T ss_pred CCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEe-
Confidence 333333320 22334 444 45555554333 4577765 999999999999999995
Q ss_pred ccc-cccCCCCC---Cccc--ceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccc
Q 001990 334 DLL-ALTILKPP---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTR 407 (985)
Q Consensus 334 ~~~-alg~l~~p---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tr 407 (985)
+.. .+|..... ..+| .|+++. +|.+++ |-.+|++.+++++++.+....
T Consensus 266 Ev~~g~g~~g~~~a~~~~~~~pdi~t~-sK~~~~-----G~~~G~~~~~~~i~~~~~~~~-------------------- 319 (453)
T 4ffc_A 266 EVQTGFARTGAWFASEHEGIVPDIVTM-AKGIAG-----GMPLSAVTGRAELMDAVYAGG-------------------- 319 (453)
T ss_dssp CTTTTTTTTSSSSTHHHHTCCCSEEEE-CGGGGT-----TSSCEEEEEEHHHHTTSCTTS--------------------
T ss_pred cCccCCCcccccchhhhcCCCcchHhh-hhhhcC-----CcCeEEEEECHHHHhhhcccC--------------------
Confidence 332 23322111 1123 466544 488853 234678888998887762110
Q ss_pred cccccccccCCCccchhH-HHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhc----CCCEEEc-CCCCcceEEEe
Q 001990 408 EQHIRRDKATSNICTAQA-LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK----LGTVEVQ-GLPFFDTVKVK 481 (985)
Q Consensus 408 e~~~rre~atsni~t~~~-l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~----~g~~~~~-~~~~~~~~~i~ 481 (985)
...|.+ .+.. ..+..+++ ..+..+ ++.++..++.+++++.|++ .+.+..+ +...+-.+.+.
T Consensus 320 ------~~~t~~--~~~~~~aaa~aal--~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~ 386 (453)
T 4ffc_A 320 ------LGGTYG--GNPVTCAAAVAAL--GVMREL---DLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIV 386 (453)
T ss_dssp ------SCCSSS--SCHHHHHHHHHHH--HHHHHT---THHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEB
T ss_pred ------cCCCCC--cCHHHHHHHHHHH--HHhhhh---hHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEe
Confidence 011111 1111 11222222 322222 3445555566666666654 3323322 11112123332
Q ss_pred c-----CC---HHHHHHHHHHcCceeeeec--CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 482 C-----AD---AHAIASAAYKIEMNLRVVD--SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 482 ~-----~~---~~~l~~~L~~~Gi~~~~~~--~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
. +. +.++.+.|.++||.+.... ++.+|++++..+|++|+++++++|..
T Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~ 444 (453)
T 4ffc_A 387 KPGTLEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSD 444 (453)
T ss_dssp CTTSCCBCHHHHHHHHHHHHHTTEECCEECTTSCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred cCcccCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1 22 6788999999999886543 48899999999999999999999974
No 435
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.27 E-value=4e-10 Score=130.54 Aligned_cols=277 Identities=13% Similarity=0.133 Sum_probs=165.8
Q ss_pred HHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhh-hhcCCCCEEEEcC-CCChhHHHHHHHh---------hcCCCeE
Q 001990 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQKGKKKTFIIAS-NCHPQTIDICITR---------ADGFDIK 282 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~~~~g~~Vlv~~-~~h~s~~~~~~~~---------a~~~gi~ 282 (985)
.++.+.+++++|.+..++.+++||+.++++++.+.+ .. ++++||+.+ .-|+.....+... ....|+.
T Consensus 88 ~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (433)
T 1zod_A 88 VDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVT--GKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSF 165 (433)
T ss_dssp HHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHH--TCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEE
T ss_pred HHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhh--CCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCce
Confidence 456678999998777788889999988888765433 23 467888777 5666555444210 0012555
Q ss_pred EEEeC------------------chhhhc-cC----CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEec
Q 001990 283 VVVSD------------------LKDIDY-KS----GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATD 334 (985)
Q Consensus 283 v~~~~------------------~~~l~~-l~----~~t~~V~v~~p-n~~G~i~d----l~~I~~~a~~~galliV~a~ 334 (985)
.+.++ +++|++ ++ +++++|++... |.+|.+.+ +++|.++|+++|+++++| +
T Consensus 166 ~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D-E 244 (433)
T 1zod_A 166 AIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILD-E 244 (433)
T ss_dssp EECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEE-C
T ss_pred EecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEe-c
Confidence 44332 445555 53 56777776432 56897765 999999999999999995 3
Q ss_pred ccc-ccCCCCCC-----cccceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEeccccc
Q 001990 335 LLA-LTILKPPG-----ELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTRE 408 (985)
Q Consensus 335 ~~a-lg~l~~p~-----~~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre 408 (985)
..+ +|...... ....|++.. +|+|++ |-.+|++++++++++.+.. +. +
T Consensus 245 v~~~~g~~g~~~~~~~~~~~~di~s~-sK~~~~-----G~~ig~~~~~~~~~~~~~~----------~~--~-------- 298 (433)
T 1zod_A 245 AQTGVGRTGTMFACQRDGVTPDILTL-SKTLGA-----GLPLAAIVTSAAIEERAHE----------LG--Y-------- 298 (433)
T ss_dssp TTTTTTTTSSSSTHHHHTCCCSEEEE-CHHHHT-----TSSCEEEEECHHHHHHHHH----------TT--C--------
T ss_pred cccCCCcCchHhHHhhcCCCCCEEEe-cccccC-----CCCeeEEEEhHHHHHhhcc----------CC--C--------
Confidence 333 43222111 123576533 388863 2346899999888766511 00 0
Q ss_pred ccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcC----CCEEEc-CCCCcceEEEec-
Q 001990 409 QHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQ-GLPFFDTVKVKC- 482 (985)
Q Consensus 409 ~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~-~~~~~~~~~i~~- 482 (985)
....|.+. .+.+..+..+++ ..+..++ +.++..++.++++++|+++ +.+... +...+-.+.+..
T Consensus 299 ----~~~~t~~~-~~~~~~a~~aal--~~~~~~~---~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~i~~~~~ 368 (433)
T 1zod_A 299 ----LFYTTHVS-DPLPAAVGLRVL--DVVQRDG---LVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKD 368 (433)
T ss_dssp ----CCCCTTTT-CHHHHHHHHHHH--HHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEE
T ss_pred ----CCCCCCCc-CHHHHHHHHHHH--HHHHhCC---HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecC
Confidence 00122211 111222222332 2222233 4566677778888877663 322222 111121232321
Q ss_pred -------CC-HHHHHHHHHHcCceeeeec--C--CeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 483 -------AD-AHAIASAAYKIEMNLRVVD--S--NTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 -------~~-~~~l~~~L~~~Gi~~~~~~--~--~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.. +.++.+.|.++||.+.... . +.+|++++..+|++|+++++++|..
T Consensus 369 ~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~ 427 (433)
T 1zod_A 369 RRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQ 427 (433)
T ss_dssp TTTTEECTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHCCCeEeccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHH
Confidence 12 6789999999999886542 3 7899999999999999999999974
No 436
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.27 E-value=4.3e-11 Score=137.72 Aligned_cols=268 Identities=12% Similarity=0.034 Sum_probs=160.9
Q ss_pred HHHHHHHHHhh-CC-----CCcceee--ccchHHHHHHHHHHhh-hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEE
Q 001990 214 LNFQTMIADLT-GL-----PMSNASL--LDEGTAAAEAMAMCNN-IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVV 284 (985)
Q Consensus 214 ~e~q~~ia~L~-g~-----~~~~~sl--~~~~ta~~ea~~~a~~-~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~ 284 (985)
.++++.+++++ +. ++.++.+ +.|+|.+.+.+....+ +. +||+|+++...|+.+...++ ..|.+++
T Consensus 76 ~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~--~gd~Vl~~~p~~~~~~~~~~----~~g~~~~ 149 (412)
T 1yaa_A 76 PSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFF--PDKLVYLSKPTWANHMAIFE----NQGLKTA 149 (412)
T ss_dssp HHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHC--TTCCEEEEESCCTTHHHHHH----TTTCCEE
T ss_pred HHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhC--CCCEEEEeCCCCccHHHHHH----HcCceEE
Confidence 34667777777 31 3557888 8999988887632222 23 78999999999999887765 3466666
Q ss_pred EeCc----------hhhhc-cCC---CEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEeccc-cccCCC---
Q 001990 285 VSDL----------KDIDY-KSG---DVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLL-ALTILK--- 342 (985)
Q Consensus 285 ~~~~----------~~l~~-l~~---~t~~V~v~~p-n~~G~i~---dl~~I~~~a~~~galliV~a~~~-alg~l~--- 342 (985)
.++. +++++ +++ .++++++.+| |.+|.+. ++++|+++|+++|+++++|. .. .+..-.
T Consensus 150 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De-~~~~~~~~~~~~ 228 (412)
T 1yaa_A 150 TYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDT-AYQGFATGDLDK 228 (412)
T ss_dssp EEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEE-SCTTTSSSCHHH
T ss_pred EEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEec-ccccccCCcccc
Confidence 6543 34544 432 2444555787 6799885 57789999999999999953 22 221100
Q ss_pred C--C----Ccccc----eEEEecC-ccccccCCCCCCceEEEE--E-----chh----hHhcCCCceeeeeecCCCCcce
Q 001990 343 P--P----GELGA----DIVVGSA-QRFGVPMGYGGPHAAFLA--T-----SQE----YKRMMPGRIVGVSIDSSGKPAL 400 (985)
Q Consensus 343 ~--p----~~~Ga----Di~v~s~-k~lg~P~~~GGP~~G~l~--~-----~~~----~~~~lp~~~vG~s~d~~g~~~~ 400 (985)
. + ...+. +++++|. |.|+.| |-.+|+++ + +++ +++++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~----GlriG~~~~~~~~~~~~~~~~~~l~~~l~---------------- 288 (412)
T 1yaa_A 229 DAYAVRLGVEKLSTVSPVFVCQSFAKNAGMY----GERVGCFHLALTKQAQNKTIKPAVTSQLA---------------- 288 (412)
T ss_dssp HTHHHHHHHHHTTTTCCEEEEEECTTTSCCG----GGCEEEEEEECCSCTTHHHHHHHHHHHHH----------------
T ss_pred hhHHHHHHHhcCCCCcceEEEeccCCCCCCc----CCcceEEEEEecCCCCCHHHHHHHHHHHH----------------
Confidence 0 0 11333 5678786 766421 12368888 6 444 443320
Q ss_pred EEecccccccccccccCCCcc-chhHHHHHHHHHHHHHcC-----cchHHHHHHHHHHHHHHHHHHHhcCC---CEEEcC
Q 001990 401 RVAMQTREQHIRRDKATSNIC-TAQALLANMAAMYAVYHG-----PEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQG 471 (985)
Q Consensus 401 ~l~l~tre~~~rre~atsni~-t~~~l~a~~aa~y~~~~g-----~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~~ 471 (985)
...+ . .+.+ +.....+..+++ .... .+.++++.++..++.+++.+.|+++| ++++..
T Consensus 289 ---------~~~~--~-~~~~~~~~~~~a~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 354 (412)
T 1yaa_A 289 ---------KIIR--S-EVSNPPAYGAKIVAKLL--ETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIV 354 (412)
T ss_dssp ---------HHHH--T-TTSSCCHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHH
T ss_pred ---------HHHh--h-ccCCCChHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeec
Confidence 0001 1 1111 112222222222 2110 24678888899999999999998865 244432
Q ss_pred CCCcceEEE-ecCCHHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 472 LPFFDTVKV-KCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 472 ~~~~~~~~i-~~~~~~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
. ...-+.+ ..+ ...+.+.|.++||.+.. .+|+|++. .+++++++++++|..
T Consensus 355 ~-~~~~~~~~~~~-~~~~~~~l~~~gi~v~~----~~Ris~~~-~~~~~i~~~~~~l~~ 406 (412)
T 1yaa_A 355 N-QCGMFSFTGLT-PQMVKRLEETHAVYLVA----SGRASIAG-LNQGNVEYVAKAIDE 406 (412)
T ss_dssp H-CCSSEEECCCC-HHHHHHHHHHHCEECCT----TSEEEGGG-CCTTTHHHHHHHHHH
T ss_pred c-CceEEEeeCCC-HHHHHHHHHhCCEEecc----CcEEEEcc-CCHhHHHHHHHHHHH
Confidence 1 1111222 222 55675556678998864 57999985 589999999999873
No 437
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.26 E-value=1.6e-11 Score=140.31 Aligned_cols=271 Identities=10% Similarity=0.081 Sum_probs=164.5
Q ss_pred HHHHHHHHhh-CC--CCcceee--ccchHHHHHHHHHHhh-hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc
Q 001990 215 NFQTMIADLT-GL--PMSNASL--LDEGTAAAEAMAMCNN-IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL 288 (985)
Q Consensus 215 e~q~~ia~L~-g~--~~~~~sl--~~~~ta~~ea~~~a~~-~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~ 288 (985)
++++.+|+++ |. ++.++.+ +.|+|.++++++.++. +. +||+|+++...|+.+...++. .|.+++.++.
T Consensus 73 ~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~--~gd~vl~~~p~~~~~~~~~~~----~g~~~~~~~~ 146 (394)
T 2ay1_A 73 EFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMAN--PDLRVFVSDPTWPNHVSIMNF----MGLPVQTYRY 146 (394)
T ss_dssp HHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHC--TTCCEEEEESCCHHHHHHHHH----HTCCEEEEEC
T ss_pred HHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHHhcC--CCCEEEEcCCCChhHHHHHHH----cCCceEEEec
Confidence 4667777776 54 5667877 8999999888775543 23 789999999999998887754 3555555543
Q ss_pred ----------hhhhc-cCC---CEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEeccccccCCC------CC
Q 001990 289 ----------KDIDY-KSG---DVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK------PP 344 (985)
Q Consensus 289 ----------~~l~~-l~~---~t~~V~v~~p-n~~G~i~---dl~~I~~~a~~~galliV~a~~~alg~l~------~p 344 (985)
+++++ +++ +++++++.+| |.+|.+. ++++|+++|+++|+++++|. ..+..... +.
T Consensus 147 ~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De-~~~~~~~~~~~~~~~~ 225 (394)
T 2ay1_A 147 FDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDL-AYQGFGDGLEEDAAGT 225 (394)
T ss_dssp EETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEE-CCTTSSSCHHHHHHHH
T ss_pred ccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEec-CccccccCcccchHHH
Confidence 34554 432 3666777787 6899886 46788999999999999953 22211110 00
Q ss_pred ---Ccccce-EEEecC-ccccccCCCCCCceEEEEE---chhhHhcCCCceeeeeecCCCCcceEEeccccccccccccc
Q 001990 345 ---GELGAD-IVVGSA-QRFGVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKA 416 (985)
Q Consensus 345 ---~~~GaD-i~v~s~-k~lg~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~a 416 (985)
...+.| ++++|. |.++.| |-.+|++++ ++++++.+-..+ ....+ .
T Consensus 226 ~~~~~~~~~~i~~~s~sK~~~~~----G~riG~~~~~~~~~~~~~~l~~~~---------------------~~~~~--~ 278 (394)
T 2ay1_A 226 RLIASRIPEVLIAASCSKNFGIY----RERTGCLLALCADAATRELAQGAM---------------------AFLNR--Q 278 (394)
T ss_dssp HHHHHHCSSEEEEEECTTTTTCG----GGCEEEEEEECSSHHHHHHHHHHH---------------------HHHHH--T
T ss_pred HHHhhcCCCEEEEEeccCCCcCc----CCccceEEEEeCCHHHHHHHHHHH---------------------HHHHh--h
Confidence 122333 567776 877532 234699988 665544320000 00001 1
Q ss_pred CCCccchhHHHHHHHHHHHHHc-----CcchHHHHHHHHHHHHHHHHHHHhcCC---CEEEcCCCCcceEE-EecCCHHH
Q 001990 417 TSNICTAQALLANMAAMYAVYH-----GPEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQGLPFFDTVK-VKCADAHA 487 (985)
Q Consensus 417 tsni~t~~~l~a~~aa~y~~~~-----g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~~~~~-i~~~~~~~ 487 (985)
+.+.++.....+..+++ ... -.+.++++.++..++.+++.+.|+++| ++++.... ..-+. +..+ ...
T Consensus 279 ~~~~~~~~~~~a~~~~l--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~g~~~~~~~~-~~~ 354 (394)
T 2ay1_A 279 TYSFPPFHGAKIVSTVL--TTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEH-RGMFSRLGAT-PEQ 354 (394)
T ss_dssp TTSSCCCHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHHC-CSSEEECCCC-HHH
T ss_pred hcCCCChHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcCC-ceEEEeeCCC-HHH
Confidence 11111112222222222 111 124678888888999999999998764 24433111 11122 2222 556
Q ss_pred HHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001990 488 IASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 488 l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~ 528 (985)
+.+.|.++||.+.. .+|++++ .++++|+++++++|.
T Consensus 355 ~~~~l~~~gi~v~~----~~Ris~~-~~~~~~i~~~~~~l~ 390 (394)
T 2ay1_A 355 VKRIKEEFGIYMVG----DSRINIA-GLNDNTIPILARAII 390 (394)
T ss_dssp HHHHHHHHCEECCT----TCEEEGG-GCCTTTHHHHHHHHH
T ss_pred HHHHHHhCCEEecC----CCeEEee-cCCHhhHHHHHHHHH
Confidence 77777788998864 3699988 579999999999986
No 438
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.26 E-value=3.4e-10 Score=132.06 Aligned_cols=274 Identities=12% Similarity=0.046 Sum_probs=158.2
Q ss_pred HHHHHHHHHhh-CCC-----Ccceee--ccchHHHHHHH--HHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001990 214 LNFQTMIADLT-GLP-----MSNASL--LDEGTAAAEAM--AMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 214 ~e~q~~ia~L~-g~~-----~~~~sl--~~~~ta~~ea~--~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v 283 (985)
.++++.+++++ |.+ +.++.+ +.|||.+.+.+ +++. .. +||+|++++..|+.+...++.+++..|.++
T Consensus 97 ~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~-~~--~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v 173 (448)
T 3meb_A 97 PLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHL-WM--PKAEFYMPSTTWPNHYGIYDKVFNKLKVPY 173 (448)
T ss_dssp HHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHH-HC--TTCCEEEESSCCTHHHHHHHHHHCTTTSCC
T ss_pred HHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHH-hC--CCCEEEECCCCCHhHHHHHHhhHHhCCCeE
Confidence 45677888887 877 567888 89999887753 2222 23 789999999999999888763333567777
Q ss_pred EEeCc-----------hhhhc-cC---CCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEeccccccCCC--
Q 001990 284 VVSDL-----------KDIDY-KS---GDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILK-- 342 (985)
Q Consensus 284 ~~~~~-----------~~l~~-l~---~~t~~V~v~~p-n~~G~i~d---l~~I~~~a~~~galliV~a~~~alg~l~-- 342 (985)
+.++. +++++ +. ++++++++.+| |.+|.+.+ +++|+++|+++|+++++|.-...++.-.
T Consensus 174 ~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~ 253 (448)
T 3meb_A 174 KEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFE 253 (448)
T ss_dssp EEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHH
T ss_pred EEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcc
Confidence 66654 23333 43 45777777787 78998865 6669999999999999953111222110
Q ss_pred -CC---C---cccce-EEEecC-ccccccCCCCCCceEEE--EE--------c-h----hhHhcCCCceeeeeecCCCCc
Q 001990 343 -PP---G---ELGAD-IVVGSA-QRFGVPMGYGGPHAAFL--AT--------S-Q----EYKRMMPGRIVGVSIDSSGKP 398 (985)
Q Consensus 343 -~p---~---~~GaD-i~v~s~-k~lg~P~~~GGP~~G~l--~~--------~-~----~~~~~lp~~~vG~s~d~~g~~ 398 (985)
+. . ..+.+ ++++|. |.|+.| |-.+|++ .+ . + ++.+.+
T Consensus 254 ~~~~~~~~~~~~~~~~i~~~S~SK~~g~~----G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l--------------- 314 (448)
T 3meb_A 254 ADAFAVRMFVDAGVEVLVAQSFSKNFGLY----GERIGCLHVVHAGVEGSVEKNKALSAAMVSGM--------------- 314 (448)
T ss_dssp HHTHHHHHHHHTTCCEEEEEECTTTSCCG----GGCCEEEEEECCCCSSSHHHHHHHHHHHHHHH---------------
T ss_pred cCchhHHHHhhcCCcEEEEecccccCCCc----cccceeeeeeeccccccccCCHHHHHHHHHHH---------------
Confidence 00 0 12344 557776 777533 2236777 44 3 3 222221
Q ss_pred ceEEecccccccccccccCCCccchhHHHHHHHHHHHHHc-----CcchHHHHHHHHHHHHHHHHHHHhcCCCEEE----
Q 001990 399 ALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYH-----GPEGLKTIAQRVHGLAGTFALGLKKLGTVEV---- 469 (985)
Q Consensus 399 ~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~-----g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~---- 469 (985)
....| ..+++.+ .+...+++..+... -.+.++++.++..++.+++.+.|+++| +.-
T Consensus 315 ----------~~~~~-~~~~~~~---~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~~~~ 379 (448)
T 3meb_A 315 ----------TLQIR-KTWSMSA---IHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRK-TPGPGSK 379 (448)
T ss_dssp ----------HHHHH-TTTSSCC---HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCSTTT
T ss_pred ----------HHHHh-cccCCcc---HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCcCcc
Confidence 00011 1223321 12111111111100 013467888888999999999999874 321
Q ss_pred --cC--CCCcceEEEecCCHHHHHHHH-HHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 470 --QG--LPFFDTVKVKCADAHAIASAA-YKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 470 --~~--~~~~~~~~i~~~~~~~l~~~L-~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+. .+...-+.+. .-..++...| .++||.+.. +..|+|+... ++++|++++++|..
T Consensus 380 ~~~~~~~~~~g~~~~~-~~~~~~~~~ll~~~gV~v~~---G~gRis~a~~-~~~~i~~~~~~l~~ 439 (448)
T 3meb_A 380 GTWDHILTAIGMFTFT-GLTPEHVDYLKEKWSIYLVK---AGGRMSMCGL-TESNCDYVAEAIHD 439 (448)
T ss_dssp CCCTHHHHCCSSEEEC-CCCHHHHHHHHHHHCEEECS---GGGEEEGGGC-CTTTHHHHHHHHHH
T ss_pred cccceeCCCceEEEec-CCCHHHHHHHHHhCCEEEeC---CCcEEEEecC-CHHHHHHHHHHHHH
Confidence 10 0111113331 1123445555 567998864 2249998654 44559999998863
No 439
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.25 E-value=3.5e-10 Score=130.98 Aligned_cols=281 Identities=14% Similarity=0.112 Sum_probs=152.6
Q ss_pred HHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhh---c--CCCCEEEEcCCCChhHHHHHHHhhcCCC--------
Q 001990 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ---K--GKKKTFIIASNCHPQTIDICITRADGFD-------- 280 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~---~--~~g~~Vlv~~~~h~s~~~~~~~~a~~~g-------- 280 (985)
.++.+.++++++.+..++.+++||+.++++++.+.+.. + .++++||+.+..|+..............
T Consensus 75 ~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 154 (430)
T 3i4j_A 75 EEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPL 154 (430)
T ss_dssp HHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC------------------------
T ss_pred HHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCc
Confidence 35667899999887778989999999888877544311 1 1478888877655443322211110000
Q ss_pred -e--EEEEeCc-----------hhhhc-cC----CCEeEEEEEcC-C-CCeeecc----HHHHHHHHHhCCcEEEEEecc
Q 001990 281 -I--KVVVSDL-----------KDIDY-KS----GDVCGVLVQYP-G-TEGEVLD----YGDFIKNAHANGVKVVMATDL 335 (985)
Q Consensus 281 -i--~v~~~~~-----------~~l~~-l~----~~t~~V~v~~p-n-~~G~i~d----l~~I~~~a~~~galliV~a~~ 335 (985)
. .+..++. ++|++ +. +++++|++..+ + ..|.+.+ +++|.++|+++|+++++| +.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D-Ev 233 (430)
T 3i4j_A 155 MRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIAD-EV 233 (430)
T ss_dssp -CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEE-CT
T ss_pred CCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEe-ch
Confidence 0 2222322 55665 43 55666666544 4 6777766 999999999999999995 33
Q ss_pred cc-ccCCCCC---Ccc-c--ceEEEecCccccccCCCCC-CceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccc
Q 001990 336 LA-LTILKPP---GEL-G--ADIVVGSAQRFGVPMGYGG-PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTR 407 (985)
Q Consensus 336 ~a-lg~l~~p---~~~-G--aDi~v~s~k~lg~P~~~GG-P~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tr 407 (985)
.+ ++..... ..+ | .|+++. +|.|++ | =-+|++.+++++++.+... .+.+
T Consensus 234 ~~~~~~~g~~~~~~~~~~~~~di~t~-sK~l~~-----G~~r~G~~~~~~~i~~~~~~~----------~~~~------- 290 (430)
T 3i4j_A 234 MSGMGRCGSPLALSRWSGVTPDIAVL-GKGLAA-----GYAPLAGLLAAPQVYETVMGG----------SGAF------- 290 (430)
T ss_dssp TTTTTTTSSSSGGGGTTTCCCSEEEE-CGGGTT-----TSSCCEEEEECHHHHHHHHHT----------TCBC-------
T ss_pred hhCCCcccchhhhhhhcCCCCcEEEE-cccccC-----CccccEEEEECHHHHHHHhcc----------CCcc-------
Confidence 22 3221111 122 3 566653 388752 2 2357888898887765110 0000
Q ss_pred cccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhc----CCCEEEcC-CCCcceEEEec
Q 001990 408 EQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK----LGTVEVQG-LPFFDTVKVKC 482 (985)
Q Consensus 408 e~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~----~g~~~~~~-~~~~~~~~i~~ 482 (985)
....|.+. ++.+..+..+++ ..+..+ ++.++..++.+++++.|.+ ++++.... ...+-.+.+..
T Consensus 291 -----~~~~t~~~-~~~~~aaa~aal--~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 359 (430)
T 3i4j_A 291 -----MHGFTYAG-HPVSVAAGLSVL--DIVERE---DLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGD 359 (430)
T ss_dssp -----CCCCTTTT-CHHHHHHHHHHH--HHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC-
T ss_pred -----cccCCCCC-CHHHHHHHHHHH--HHHHcc---cHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEecc
Confidence 00112111 111222222222 322222 3444555555666655554 33244331 11121222211
Q ss_pred ---------CC-HHHHHHHHHHcCceeeee-------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 483 ---------AD-AHAIASAAYKIEMNLRVV-------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 ---------~~-~~~l~~~L~~~Gi~~~~~-------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+. +.++.+.|.++||.+... .++.+|++++...|++++++++++|..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~ 423 (430)
T 3i4j_A 360 LATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAG 423 (430)
T ss_dssp -----------CHHHHHHHHHHTTEECC-----------CEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred ccccCCCccHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 11 477999999999988653 257899999999999999999999974
No 440
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.25 E-value=2e-10 Score=132.10 Aligned_cols=273 Identities=12% Similarity=0.028 Sum_probs=154.0
Q ss_pred HHHHHHHHhh-CCC-----Ccce--eeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEe
Q 001990 215 NFQTMIADLT-GLP-----MSNA--SLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVS 286 (985)
Q Consensus 215 e~q~~ia~L~-g~~-----~~~~--sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~ 286 (985)
++++.+|+++ |.+ +.++ ..+.+++++.+++...++...++||+|++++..|+.+...++. .|.+++.+
T Consensus 83 ~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~~ 158 (409)
T 4eu1_A 83 SFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAK----AGMELTPY 158 (409)
T ss_dssp HHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHH----TTCEEEEE
T ss_pred HHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHH----cCCeEEEE
Confidence 4667777765 665 3445 3477888887776443332123789999999999999888754 57788777
Q ss_pred Cc----------hhhhc-c---CCCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEeccccccCCCC-----
Q 001990 287 DL----------KDIDY-K---SGDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTILKP----- 343 (985)
Q Consensus 287 ~~----------~~l~~-l---~~~t~~V~v~~p-n~~G~i~d---l~~I~~~a~~~galliV~a~~~alg~l~~----- 343 (985)
+. +++++ + .++++++++.+| |++|.+.+ +++|+++|+++|+++++|. ..+-.....
T Consensus 159 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De-~y~~~~~~~~~~~~ 237 (409)
T 4eu1_A 159 SYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDM-AYQGFATGQLDYDA 237 (409)
T ss_dssp CCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEE-SCTTTTTSCHHHHT
T ss_pred EeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEec-cccccccCCcccch
Confidence 54 34554 4 235566666788 78998876 5669999999999999953 222111111
Q ss_pred --C----CcccceEEEecC-ccccccCCCCCCceEEE--EE-chhhHhcCCCceeeeeecCCCCcceEEecccccccccc
Q 001990 344 --P----GELGADIVVGSA-QRFGVPMGYGGPHAAFL--AT-SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR 413 (985)
Q Consensus 344 --p----~~~GaDi~v~s~-k~lg~P~~~GGP~~G~l--~~-~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rr 413 (985)
. ....-.++++|. |.|+.| |-.+|++ .+ ++++.+.+-..+ ....+
T Consensus 238 ~~~~~~~~~~~~~i~~~S~SK~~g~~----G~riG~~~~v~~~~~~~~~l~~~~---------------------~~~~~ 292 (409)
T 4eu1_A 238 FVPRHLVDMVPNLIVAQSFSKNFGLY----GHRCGALHISTASAEEAKRLVSQL---------------------ALLIR 292 (409)
T ss_dssp HHHHHHHTTSSCCEEEEECTTTSSCG----GGCCEEEEEECSSHHHHHHHHHHH---------------------HHHHH
T ss_pred HHHHHHHhhCCcEEEEecCcccccCc----cCCceEEEEEeCCHHHHHHHHHHH---------------------HHHHh
Confidence 0 111223567776 877643 1235785 33 445322210000 00000
Q ss_pred cccCCCccchhHHHHHHHHHHHHHcC-----cchHHHHHHHHHHHHHHHHHHHhcCCC---EEEcCCCCcceEEEecCCH
Q 001990 414 DKATSNICTAQALLANMAAMYAVYHG-----PEGLKTIAQRVHGLAGTFALGLKKLGT---VEVQGLPFFDTVKVKCADA 485 (985)
Q Consensus 414 e~atsni~t~~~l~a~~aa~y~~~~g-----~~Gl~~i~~~~~~~a~~l~~~L~~~g~---~~~~~~~~~~~~~i~~~~~ 485 (985)
..+++. ..+...+++..+.... .+.++++.++..++.+++.+.|+++|. +++.. +...-+.+ ..-.
T Consensus 293 -~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~-~~~~ 366 (409)
T 4eu1_A 293 -PMYNNP---PLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIE-RQVGMMAY-TGLT 366 (409)
T ss_dssp -HHHSSC---CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHH-HSCSSEEE-CCCC
T ss_pred -hhcCCC---ChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceec-CCceEEEE-eCCC
Confidence 011111 1121111111111100 234677888889999999999998751 23221 11111222 2112
Q ss_pred HHHHHHHH-HcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001990 486 HAIASAAY-KIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 486 ~~l~~~L~-~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~ 528 (985)
.++.+.|. ++||.+.. + .|++++.. +++|+++++++|.
T Consensus 367 ~~~~~~ll~~~gv~v~p---~-~Ri~~~~~-~~~~i~~~~~~l~ 405 (409)
T 4eu1_A 367 REQVELLRSEYHIYMTL---N-GRAAVSGL-NSTNVEYVSQAIH 405 (409)
T ss_dssp HHHHHHHHHHHCEECCT---T-CEEEGGGC-CTTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEcC---C-CEEEEEec-CHhhHHHHHHHHH
Confidence 34455554 67998864 2 48888765 4566999999986
No 441
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.25 E-value=5.4e-10 Score=130.39 Aligned_cols=282 Identities=11% Similarity=0.121 Sum_probs=164.3
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhh-h-hcC---CCCEEEEcCC-CChhHHHHHHHhh--------cC
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-I-QKG---KKKTFIIASN-CHPQTIDICITRA--------DG 278 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~-~~~---~g~~Vlv~~~-~h~s~~~~~~~~a--------~~ 278 (985)
..++.+.++++++.+.. +.+++|||.++++++.+.+ + ... ++++||+.+. -|......+..-. ..
T Consensus 93 ~~~la~~l~~~~~~~~~-v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 171 (452)
T 3n5m_A 93 AIKLAEKLNEWLGGEYV-IFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEP 171 (452)
T ss_dssp HHHHHHHHHHHHTSCEE-EEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCC
T ss_pred HHHHHHHHHHhCCCCce-EEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCC
Confidence 34566788999987666 7788999999988875543 1 012 5688887775 4544443332100 00
Q ss_pred CCeEEEEeC--------------------chhhhc-cC----CCEeEEEEEcC--CCCeeecc----HHHHHHHHHhCCc
Q 001990 279 FDIKVVVSD--------------------LKDIDY-KS----GDVCGVLVQYP--GTEGEVLD----YGDFIKNAHANGV 327 (985)
Q Consensus 279 ~gi~v~~~~--------------------~~~l~~-l~----~~t~~V~v~~p--n~~G~i~d----l~~I~~~a~~~ga 327 (985)
....+.+++ +++|++ +. +++++|++..+ | +|.+.+ +++|.++|+++|+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~ 250 (452)
T 3n5m_A 172 FASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGA 250 (452)
T ss_dssp CCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTC
T ss_pred CCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCC
Confidence 111233333 356665 54 67888888876 7 998876 9999999999999
Q ss_pred EEEEEeccc-cccCCCC---CCccc--ceEEEecCccccccCCCCC-CceEEEEEchhhHhcCCCceeeeeecCCCCcce
Q 001990 328 KVVMATDLL-ALTILKP---PGELG--ADIVVGSAQRFGVPMGYGG-PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPAL 400 (985)
Q Consensus 328 lliV~a~~~-alg~l~~---p~~~G--aDi~v~s~k~lg~P~~~GG-P~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~ 400 (985)
++++| +.. .+|.... ...+| .|+++. +|.++ || -.+|++.+++++.+.+... ...+. +
T Consensus 251 llI~D-Ev~~g~g~~g~~~~~~~~~~~~di~t~-sK~l~-----~G~~~ig~~~~~~~i~~~~~~~-------~~~~~-~ 315 (452)
T 3n5m_A 251 LLISD-EVICGFGRTGKAFGFMNYDVKPDIITM-AKGIT-----SAYLPLSATAVKREIYEAFKGK-------GEYEF-F 315 (452)
T ss_dssp EEEEE-CTTTTTTTTSSSSGGGGTTCCCSEEEE-CGGGG-----TTSSCCEEEEEEHHHHGGGCSS-------STTCS-C
T ss_pred EEEEe-cchhCCCcccccchhhhcCCCCCEEee-ccccc-----CCCcceEEEEECHHHHHHHhhc-------cCCCC-c
Confidence 99995 332 2332211 12233 566643 48885 23 3578899999988876210 00000 0
Q ss_pred EEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcC----CCEEEc-CCCCc
Q 001990 401 RVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQ-GLPFF 475 (985)
Q Consensus 401 ~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~-~~~~~ 475 (985)
...+|.+. ++.+..+..+++ ..+..+ ++.++..++.+++++.|+++ +.+... +...+
T Consensus 316 ------------~~~~t~~~-~~~~~aaa~aal--~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~ 377 (452)
T 3n5m_A 316 ------------RHINTFGG-NPAACALALKNL--EIIENE---NLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLL 377 (452)
T ss_dssp ------------CCCCSSTT-CHHHHHHHHHHH--HHHHHT---THHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSC
T ss_pred ------------cccCCCCC-CHHHHHHHHHHH--HHHHhc---cHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEE
Confidence 00122221 111222222222 332222 34455566666666666543 323322 11112
Q ss_pred ceEEEe-cC-------C--HHHHHHHHHHcCceeeeec------CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 476 DTVKVK-CA-------D--AHAIASAAYKIEMNLRVVD------SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 476 ~~~~i~-~~-------~--~~~l~~~L~~~Gi~~~~~~------~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
-.+.+. .. . ..++.+.|.++||.+.... ++.+|++++..+|++|+++++++|..
T Consensus 378 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~ 447 (452)
T 3n5m_A 378 VGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKT 447 (452)
T ss_dssp EEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 123231 11 1 3578899999999887643 58999999999999999999999873
No 442
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.24 E-value=3.1e-10 Score=129.98 Aligned_cols=272 Identities=11% Similarity=0.072 Sum_probs=167.8
Q ss_pred HHHHHHHHHhhCC-----CC-cceeeccchHHHHHHHHHHhhhhcCCCC----EEEEcCCCChhHHHHHHHhhcCCCeEE
Q 001990 214 LNFQTMIADLTGL-----PM-SNASLLDEGTAAAEAMAMCNNIQKGKKK----TFIIASNCHPQTIDICITRADGFDIKV 283 (985)
Q Consensus 214 ~e~q~~ia~L~g~-----~~-~~~sl~~~~ta~~ea~~~a~~~~~~~g~----~Vlv~~~~h~s~~~~~~~~a~~~gi~v 283 (985)
.++++.+|++++. ++ .++.++.|++.++..++.++. . +|| +|++++-.|+.+...++ ..|.++
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~-~--~Gd~~~~~Vlv~~P~y~~~~~~~~----~~g~~~ 143 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALS-S--LARSQPVSVVAAAPFYSTYVEETT----YVRSGM 143 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHH-H--TSSSSSEEEEECSSCCTHHHHHHH----TTCBTT
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhc-C--CCCCCcceEEEcCCCchhHHHHHH----HcCCeE
Confidence 3466677777762 23 578888999888777766652 3 788 99999999999888765 346655
Q ss_pred EEeCc--hhhhccCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCC-CCcccceEEEecC-cc
Q 001990 284 VVSDL--KDIDYKSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKP-PGELGADIVVGSA-QR 358 (985)
Q Consensus 284 ~~~~~--~~l~~l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~-p~~~GaDi~v~s~-k~ 358 (985)
+.++. ++++ .+++++|++.+| |++|.+.+ +|++.+|++++++++| +....+...+ ....+.+|+++|. |.
T Consensus 144 ~~~~~d~~~l~--~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~D-e~y~~~~~~~l~~~~~~~i~~~S~SK~ 218 (391)
T 3bwn_A 144 YKWEGDAWGFD--KKGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHD-FAYYWPHYTPITRRQDHDIMLFTFSKI 218 (391)
T ss_dssp EEEEEESTTCC--CCSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEE-CTTCSTTTSCCCCCBCCSEEEEEHHHH
T ss_pred EEecCCHHHcC--CCCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEe-CCCCCCCCCccccCCCCeEEEEechhh
Confidence 55543 3333 367899999988 68998875 5666445555988885 3333221111 1245788999997 87
Q ss_pred ccccCCCCCCceEEEEE-chhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHH--H
Q 001990 359 FGVPMGYGGPHAAFLAT-SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMY--A 435 (985)
Q Consensus 359 lg~P~~~GGP~~G~l~~-~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y--~ 435 (985)
|+.| |--+|++++ ++++++.+... +...+.+..+ ....+..+++- .
T Consensus 219 ~g~~----GlRiG~~~~~~~~l~~~l~~~--------------------------~~~~~~~~~~-~~q~a~~~~l~~~~ 267 (391)
T 3bwn_A 219 TGHA----GSRIGWALVKDKEVAKKMVEY--------------------------IIVNSIGVSK-ESQVRTAKILNVLK 267 (391)
T ss_dssp HSCG----GGCEEEEEECCHHHHHHHHHH--------------------------HHHHHSSCCH-HHHHHHHHHHHHHH
T ss_pred cCCC----ccceEEEEecCHHHHHHHHHH--------------------------hcccccCCCH-HHHHHHHHHHhCcc
Confidence 7543 223599998 77776654100 0000111111 11112222220 0
Q ss_pred HHc-----CcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCC-C-C--c--------c-eEEEecCCHHHHHHHHHHcCc
Q 001990 436 VYH-----GPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL-P-F--F--------D-TVKVKCADAHAIASAAYKIEM 497 (985)
Q Consensus 436 ~~~-----g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~-~-~--~--------~-~~~i~~~~~~~l~~~L~~~Gi 497 (985)
.++ ..+.++++.++..++.+++.+.|++++++++... . . | . -+.++++....+.+.|.++||
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~l~~~gV 347 (391)
T 3bwn_A 268 ETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEETDLVSELRRHKV 347 (391)
T ss_dssp HHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEEEEEESSSCCHHHHHHHTTE
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEEEecCCcHHHHHHHHHHCCE
Confidence 111 1456788889999999999999999844776421 1 0 0 0 123444433456667888999
Q ss_pred eeeee-----cCCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001990 498 NLRVV-----DSNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 498 ~~~~~-----~~~~lris~~~~~t~edid~ll~~l~~~ 530 (985)
.+... .++.+|+|++ +++++++++++.|...
T Consensus 348 ~v~pg~~fg~~~~~iRis~~--~~~e~i~~~~~~L~~~ 383 (391)
T 3bwn_A 348 MSRAGERCGSDKKHVRVSML--SREDVFNVFLERLANM 383 (391)
T ss_dssp ECEEGGGGTCCTTEEEEESC--SCHHHHHHHHHHHHSC
T ss_pred EEccCCCCCCCCCEEEEEec--CCHHHHHHHHHHHHHH
Confidence 87542 1578999998 4899999999999864
No 443
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.24 E-value=8.5e-10 Score=131.54 Aligned_cols=285 Identities=12% Similarity=0.015 Sum_probs=163.2
Q ss_pred cceeeccchHHHHHHHHHHhhh--hcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc------------hhhhc-
Q 001990 229 SNASLLDEGTAAAEAMAMCNNI--QKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL------------KDIDY- 293 (985)
Q Consensus 229 ~~~sl~~~~ta~~ea~~~a~~~--~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~------------~~l~~- 293 (985)
.++.++.|+|.++..++.++.. ..++||+|++++..|+++...++ ..|.+++.++. ++|++
T Consensus 165 ~~i~~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~----~~g~~~~~v~~~~~~~~~~~~d~~~l~~~ 240 (533)
T 3f6t_A 165 TDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPE----LKDYELVEVDLHSYEKNDWEIEPNEIEKL 240 (533)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGG----GGGSEEEEECCCEETTTTSEECHHHHHHH
T ss_pred ceEEEECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHH----HcCCeEEEEEecCCcccCCCCCHHHHHHH
Confidence 4688889999888877665210 01378999999999999877654 24556555543 45666
Q ss_pred cCCCEeEEEEEcC-CCCeeeccHH---HHHHHHH-hCCcEEEEEeccccccCCCCC----CcccceEEEecC-ccccccC
Q 001990 294 KSGDVCGVLVQYP-GTEGEVLDYG---DFIKNAH-ANGVKVVMATDLLALTILKPP----GELGADIVVGSA-QRFGVPM 363 (985)
Q Consensus 294 l~~~t~~V~v~~p-n~~G~i~dl~---~I~~~a~-~~galliV~a~~~alg~l~~p----~~~GaDi~v~s~-k~lg~P~ 363 (985)
+++++++|++++| |++|.+.+.+ +|+++|+ ++|+++++| +..+......+ ...+.+++++|. |.+|.|
T Consensus 241 l~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~D-e~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~- 318 (533)
T 3f6t_A 241 KDPSIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISD-EVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCT- 318 (533)
T ss_dssp SCTTEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEE-CTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCG-
T ss_pred hCCCCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEc-CCccccccCccCHhhcCCCCEEEEecCcccCCCc-
Confidence 7889999999998 6799997655 8888888 689999995 33221111111 112456999998 877532
Q ss_pred CCCCCceEEEEEchh-----hHhcCCCceeee-ee---cCCCCcceEEecccc-cccccccccCCCccchhHHHHHHH--
Q 001990 364 GYGGPHAAFLATSQE-----YKRMMPGRIVGV-SI---DSSGKPALRVAMQTR-EQHIRRDKATSNICTAQALLANMA-- 431 (985)
Q Consensus 364 ~~GGP~~G~l~~~~~-----~~~~lp~~~vG~-s~---d~~g~~~~~l~l~tr-e~~~rre~atsni~t~~~l~a~~a-- 431 (985)
|--+|+++++++ +++.+++..... .. .....+ ..+.+-.| -...++.+.....+++.+....++
T Consensus 319 ---G~RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p-~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~ 394 (533)
T 3f6t_A 319 ---GWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDP-DKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALF 394 (533)
T ss_dssp ---GGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCG-GGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHH
T ss_pred ---ccceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCc-chhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHH
Confidence 112799999877 666664311000 00 000000 00000000 000011111111111112111111
Q ss_pred HHHHHHc-------CcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcCC--CCcceEEEecC-------------------
Q 001990 432 AMYAVYH-------GPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQGL--PFFDTVKVKCA------------------- 483 (985)
Q Consensus 432 a~y~~~~-------g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~~--~~~~~~~i~~~------------------- 483 (985)
++. .+. ..+-++++.++..++.+++.+.|. ++ +..... .++ +.++.+
T Consensus 395 a~~-~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-~~-~~~~~~~~g~~--~~~~l~~~~~~~~g~~~~~~~~~~~ 469 (533)
T 3f6t_A 395 SMT-HLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-AP-KDETDTNTHYY--SLIDIYRLAEKIYGKEFRDYLTNNF 469 (533)
T ss_dssp HHH-HHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-CC-CCCSTTBCCSE--EEEEHHHHHHHHHCHHHHHHHHHHC
T ss_pred HHH-HHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-CC-ccccCCCceEE--EEEehHhhhhhccchHHHHHhhccC
Confidence 121 121 234567888888899999999997 66 554321 122 112221
Q ss_pred CHHHHHHHHH-HcCceeeee-----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 484 DAHAIASAAY-KIEMNLRVV-----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 484 ~~~~l~~~L~-~~Gi~~~~~-----~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
...++..+|. ++||.+... ..+.+|+|+.. .++++++++++.|..
T Consensus 470 ~~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a~-~~~e~i~~~i~~L~~ 520 (533)
T 3f6t_A 470 EQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQAN-LPTEDYALIGKQVLE 520 (533)
T ss_dssp CHHHHHHHHHHHTTSSSCTTEEECSSTTEEEEESSS-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEee-CCHHHHHHHHHHHHH
Confidence 2345555554 679987431 25899999854 578899999999974
No 444
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.23 E-value=6.5e-10 Score=130.72 Aligned_cols=284 Identities=14% Similarity=0.144 Sum_probs=166.7
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhh-h--hc--CCCCEEEEcC-CCChhHHHHHHHhhc---------
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-I--QK--GKKKTFIIAS-NCHPQTIDICITRAD--------- 277 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~--~~--~~g~~Vlv~~-~~h~s~~~~~~~~a~--------- 277 (985)
..++.++++++++.+...+.+++||+.++++++.+.+ . .+ .++++||+.+ .-|..+...+..-..
T Consensus 99 ~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~ 178 (476)
T 3i5t_A 99 AARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDI 178 (476)
T ss_dssp HHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCC
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCC
Confidence 3456678999997655678888999999998875443 2 01 1467888766 556655554421000
Q ss_pred -CCCeEEEEeC-----------------chhhhc-cC----CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEE
Q 001990 278 -GFDIKVVVSD-----------------LKDIDY-KS----GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKV 329 (985)
Q Consensus 278 -~~gi~v~~~~-----------------~~~l~~-l~----~~t~~V~v~~p-n~~G~i~d----l~~I~~~a~~~gall 329 (985)
..++..+..+ .++|++ +. +++++|++..+ +..|.+.+ +++|.++|+++|+++
T Consensus 179 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gill 258 (476)
T 3i5t_A 179 AQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILY 258 (476)
T ss_dssp CCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEE
T ss_pred CCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 1133333222 346665 43 56788888765 56776655 999999999999999
Q ss_pred EEEeccc-cccCCCCC---C-ccc--ceEEEecCccccccCCCCC-CceEEEEEchhhHhcCCCceeeeeecCCCCcceE
Q 001990 330 VMATDLL-ALTILKPP---G-ELG--ADIVVGSAQRFGVPMGYGG-PHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALR 401 (985)
Q Consensus 330 iV~a~~~-alg~l~~p---~-~~G--aDi~v~s~k~lg~P~~~GG-P~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~ 401 (985)
++| +.. .+|-.... . .+| .|+++. +|.|++ | -.+|++.+++++.+.+...- ...+.|
T Consensus 259 I~D-Ev~~g~gr~G~~~~~~~~~~v~pdi~t~-sK~l~~-----G~~plg~v~~~~~i~~~~~~~~-------~~~~~~- 323 (476)
T 3i5t_A 259 ISD-EVVTGFGRCGEWFASEKVFGVVPDIITF-AKGVTS-----GYVPLGGLAISEAVLARISGEN-------AKGSWF- 323 (476)
T ss_dssp EEE-CTTTTTTTTSSSCHHHHTTCCCCSEEEE-CGGGGT-----TSSCCEEEEECHHHHHTTSGGG-------CTTCEE-
T ss_pred EEE-ecccCCccccCceeeecccCCCcchhhh-hhhhcC-----CCcCeEEEEECHHHHHHHhcCC-------cccccc-
Confidence 995 332 23322211 1 233 577654 488752 3 34678888999888763110 000000
Q ss_pred EecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCC---CEEEc-CCCCcce
Q 001990 402 VAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQ-GLPFFDT 477 (985)
Q Consensus 402 l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~-~~~~~~~ 477 (985)
....|.+. .+.+..+..+++ ..+.. +++.++..++.+++++.|++++ .+..+ +...+-.
T Consensus 324 -----------~~~~t~~~-np~a~aAa~aaL--~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~~~~ 386 (476)
T 3i5t_A 324 -----------TNGYTYSN-QPVACAAALANI--ELMER---EGIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGC 386 (476)
T ss_dssp -----------CCCCTTTT-CHHHHHHHHHHH--HHHHH---TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETTEEE
T ss_pred -----------cccCCCCc-CHHHHHHHHHHH--HHHHh---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceeE
Confidence 00112111 111222222222 33222 3456777788888888887652 12222 1111111
Q ss_pred EEEecCC------------HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 478 VKVKCAD------------AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 478 ~~i~~~~------------~~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+.+.... +.++.+.|.++||.++... +.+|+++....|++|+++++++|..
T Consensus 387 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~p~l~~t~e~i~~~l~~l~~ 449 (476)
T 3i5t_A 387 VQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPLG-DLCVISPPLIISRAQIDEMVAIMRQ 449 (476)
T ss_dssp EEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEecCccccccccchhHHHHHHHHHHHHCCCEEEecC-CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2222110 4578888999999987643 8999999999999999999999975
No 445
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.22 E-value=2.2e-10 Score=132.01 Aligned_cols=258 Identities=12% Similarity=0.067 Sum_probs=152.7
Q ss_pred CCCCEEEEcCCCCCCcHHHHHhcCcE-EEEEeCC--CCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccc--cCHHH
Q 001990 678 HHRNVCIIPVSAHGTNPATAAMCGMK-IVSVGTD--AKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYE--EGIDE 751 (985)
Q Consensus 678 ~~~~~Vlv~~~~Hg~~~~~~~~~G~~-v~~v~~~--~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~--~di~e 751 (985)
+++++|+++++.++.|....+..|.+ |...+.. .+..+|.+.+.+.+.+..++++++++.+| |++|..- +.+++
T Consensus 135 ~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~ 214 (420)
T 4h51_A 135 AETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNE 214 (420)
T ss_dssp TTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHH
T ss_pred CCCCEEEEecCCchhHHHHHHHcCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHH
Confidence 47889999999888888888899987 4444442 33678999999988766678888888778 6899985 35899
Q ss_pred HHHHHHHcCCEEEEEccccc-cccCCC-CC------CcCCC-cEEEeCCcccccccCCCCCCcceeeeecccccCcCC--
Q 001990 752 ICKIIHDNGGQVYMDGANMN-AQVGLT-SP------GYIGA-DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP-- 820 (985)
Q Consensus 752 I~~la~~~g~lliVD~a~~~-~~~g~~-~~------g~~g~-Di~~~s~hKtl~~p~g~GGPg~G~l~~~~~l~~~lp-- 820 (985)
|+++|++++++++.|.++.. ..++.. .+ .+.+. =+++.|+.|+|++ -|+++|++++.........
T Consensus 215 i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~----~G~RvG~~~~~~~~~~~~~~~ 290 (420)
T 4h51_A 215 IASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGL----YSERAGTLSLLLKDKTKRADV 290 (420)
T ss_dssp HHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCC----GGGCEEEEEEECSCHHHHHHH
T ss_pred HHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEecccccccc----ccCceEEEEecccCHHHHHHH
Confidence 99999999999999988731 111100 00 01122 3566788888865 4899999987644322110
Q ss_pred -CCccccCCCCCCCCCCCCCCCcccccchhhhHHHHHHHHHH-----HhchhhHHHHHHHHHHHHHHHHHHHhc-cCCee
Q 001990 821 -SHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIA-----MMGSKGLTEASKIAILNANYMAKRLEK-HYPIL 893 (985)
Q Consensus 821 -g~~~g~~~~~~~~~~~~~t~~i~s~~~g~~~~~~~A~a~l~-----~lg~~gl~~~~~~~~~~a~~l~~~L~~-~~~i~ 893 (985)
..+.... ....++.+ ..|+. .+...+. ..-.+.+..+.++...+++.|.+.|++ +....
T Consensus 291 ~~~l~~~~--------r~~~s~~p--~~~a~----~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~ 356 (420)
T 4h51_A 291 KSVMDSLI--------REEYTCPP--AHGAR----LAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGS 356 (420)
T ss_dssp HHHHHHHH--------HTTTSSCC--HHHHH----HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred HHHHHHhh--------hcccCcch--HHHHH----HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 0000000 00111111 11111 1111111 001122344555667778888888876 32211
Q ss_pred E---cCCCCceeEEEEEEecCccccCCCCHHHHHHHHHHCCCccCCCCCCCCCEEEEeccCCCCHHhhchHHHHHHHHHH
Q 001990 894 F---RGVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKVCHNREDLFFQILLS 970 (985)
Q Consensus 894 ~---~g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~e~Gi~~~~~~~pv~~~lris~t~~~t~eeId~~~~~i~aL~~ 970 (985)
+ ....+. | .+. |.+.+. ++.|.++||++. ++ -|||+.- .+++.|+ +++++|.+
T Consensus 357 ~~~i~~q~Gm----F--~~~------gls~e~-v~~L~e~~Vy~~------~~-gRis~Ag-l~~~ni~---~~a~aI~~ 412 (420)
T 4h51_A 357 WEHVINQIGM----F--SFL------GLSKAQ-CEYCQNHNIFIT------VS-GRANMAG-LTHETAL---MLAQTIND 412 (420)
T ss_dssp CTHHHHCCSS----E--EEC------CCCHHH-HHHHHHTTEECC------TT-CEEEGGG-CCHHHHH---HHHHHHHH
T ss_pred CCeecCCCce----E--Eec------CcCHHH-HHHHHhCCEEEc------CC-CEEEecc-CCHHHHH---HHHHHHHH
Confidence 1 111122 1 122 456544 578899998763 12 2888753 4788899 99999999
Q ss_pred HHHHHHH
Q 001990 971 LTKFTTF 977 (985)
Q Consensus 971 i~~~~~~ 977 (985)
+++++.+
T Consensus 413 vvr~i~r 419 (420)
T 4h51_A 413 AVRNVNR 419 (420)
T ss_dssp HHC----
T ss_pred HHHHhhc
Confidence 9887653
No 446
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.22 E-value=1.1e-09 Score=127.64 Aligned_cols=284 Identities=11% Similarity=0.100 Sum_probs=155.3
Q ss_pred HHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhh--cCC---CCEEEEcCCCC-hhHHHHHHHhhc--------CC
Q 001990 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQ--KGK---KKTFIIASNCH-PQTIDICITRAD--------GF 279 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~--~~~---g~~Vlv~~~~h-~s~~~~~~~~a~--------~~ 279 (985)
.++.+.++++++.+...+.+++|||.++++++.+.+.. ... +++||+.+..+ ......+..-.. ..
T Consensus 90 ~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 169 (448)
T 3dod_A 90 TQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPL 169 (448)
T ss_dssp HHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC--------------------------
T ss_pred HHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCC
Confidence 45668899999766667888999999999887554321 012 68999888655 433332211000 00
Q ss_pred CeEEEEeC-------------------chhhhc-cC---CCEeEEEEEcC--CCCeeecc----HHHHHHHHHhCCcEEE
Q 001990 280 DIKVVVSD-------------------LKDIDY-KS---GDVCGVLVQYP--GTEGEVLD----YGDFIKNAHANGVKVV 330 (985)
Q Consensus 280 gi~v~~~~-------------------~~~l~~-l~---~~t~~V~v~~p--n~~G~i~d----l~~I~~~a~~~galli 330 (985)
...+..++ +++|++ +. +++++|++..+ +..|.+.+ +++|.++|+++|++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI 249 (448)
T 3dod_A 170 MFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMI 249 (448)
T ss_dssp ---CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEE
T ss_pred CCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEE
Confidence 11222232 345665 53 56777777654 66787765 9999999999999999
Q ss_pred EEecccc-ccCCCCC---Cccc--ceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEec
Q 001990 331 MATDLLA-LTILKPP---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAM 404 (985)
Q Consensus 331 V~a~~~a-lg~l~~p---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l 404 (985)
+| +..+ +|..... ..+| .|+++. +|.|++ |.-.+|++.+++++++.+...... ... +
T Consensus 250 ~D-Ev~~g~g~~g~~~a~~~~~~~~di~t~-sK~l~~----G~~~ig~v~~~~~~~~~~~~~~~~------~~~-~---- 312 (448)
T 3dod_A 250 VD-EVATGFGRTGKMFACEHENVQPDLMAA-GKGITG----GYLPIAVTFATEDIYKAFYDDYEN------LKT-F---- 312 (448)
T ss_dssp EE-CTTTTTTTTSSSSGGGGGTCCCSEEEE-CGGGGT----TSSCCEEEEEEHHHHHTTCSCGGG------CCC-C----
T ss_pred Ee-ccccCCCcccchhhhhhcCCCCCEEEe-cccccC----CcCceEEEEECHHHHHHhhhcccc------CCc-c----
Confidence 95 3322 3322111 1233 566644 488852 212357888999988876320000 000 0
Q ss_pred ccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhc---CCCEEEc-CCCCcceEEE
Q 001990 405 QTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKK---LGTVEVQ-GLPFFDTVKV 480 (985)
Q Consensus 405 ~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~---~g~~~~~-~~~~~~~~~i 480 (985)
....|.+. ++....+..+++ ..+..+ ++.++..++.+++++.|.+ .+.+... +...+-.+.+
T Consensus 313 --------~~~~t~~~-~~~~~aaa~aal--~~~~~~---~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~g~~~~~~~ 378 (448)
T 3dod_A 313 --------FHGHSYTG-NQLGCAVALENL--ALFESE---NIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGAEL 378 (448)
T ss_dssp --------CCCCTTTT-CHHHHHHHHHHH--HHHHHT---THHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEE
T ss_pred --------cccCCCCc-CHHHHHHHHHHH--HHHhcc---cHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeeEEEEEEE
Confidence 00111111 111222222222 322222 3445555666666666654 3212221 1111112222
Q ss_pred ecCC------------HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 481 KCAD------------AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 481 ~~~~------------~~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.... +.++.+.|.++||.+... ++.+|++++..+|++|+++++++|..
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~-~~~iRi~~~~~~t~e~i~~~l~~l~~ 438 (448)
T 3dod_A 379 VRSKETKEPYPADRRIGYKVSLKMRELGMLTRPL-GDVIAFLPPLASTAEELSEMVAIMKQ 438 (448)
T ss_dssp CSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEE-TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred ccCcccccccchhhHHHHHHHHHHHHCCcEEecc-CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1110 368999999999988764 48999999999999999999999974
No 447
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.22 E-value=1.4e-11 Score=142.79 Aligned_cols=242 Identities=10% Similarity=-0.020 Sum_probs=144.3
Q ss_pred CCCCEEEEcCCCCCCcHHHHHhcCcEEEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcC-CCccccccCHHHHHHHH
Q 001990 678 HHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYP-STHGVYEEGIDEICKII 756 (985)
Q Consensus 678 ~~~~~Vlv~~~~Hg~~~~~~~~~G~~v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~p-n~~G~i~~di~eI~~la 756 (985)
.++++|+++.+.|..+...++..|++++.+. +|+++|+++++ +++++|++++| |++|.+. + + + +
T Consensus 153 ~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~------~d~~~l~~~~~---~~~k~v~l~~p~NPtG~~~-~-~-~---l 217 (427)
T 2hox_A 153 APESKVVAHAPFYPVFREQTKYFDKKGYVWA------GNAANYVNVSN---PEQYIEMVTSPNNPEGLLR-H-A-V---I 217 (427)
T ss_dssp SCCEEEEECSSCCHHHHHHHHHSCBTTEEEE------EEGGGGTTCSC---GGGEEEEEESSCTTTCCCC-C-C-S---S
T ss_pred CCCCEEEEeCCCcccHHHHHHHcCCeeeeec------CCHHHHHHhhc---CCceEEEEcCCCCCccccc-H-H-H---H
Confidence 3678999999877666666778898876543 47888888776 57899999999 5799987 5 3 2 3
Q ss_pred HHcCCEEEEEccccccccCCCCCCcCCCcEEEeCCcccccccCCCCCCcceeeeec-ccccCcCCCCccccCCCCCCCCC
Q 001990 757 HDNGGQVYMDGANMNAQVGLTSPGYIGADVCHLNLHKTFCIPHGGGGPGMGPIGVK-KHLAPFLPSHPVVSTGGIPAPEK 835 (985)
Q Consensus 757 ~~~g~lliVD~a~~~~~~g~~~~g~~g~Di~~~s~hKtl~~p~g~GGPg~G~l~~~-~~l~~~lpg~~~g~~~~~~~~~~ 835 (985)
+ ++..++|.++......+... ..+.++++.|++|+|+.| |.++|+++++ +++++.+.....
T Consensus 218 ~--~~~~i~d~~~~~~~~s~~~~-~~~~~i~~~S~SK~~g~~----G~RiG~~~~~~~~l~~~l~~~~~----------- 279 (427)
T 2hox_A 218 K--GCKSIYDMVYYWPHYTPIKY-KADEDILLFTMSKFTGHS----GSRFGWALIKDESVYNNLLNYMT----------- 279 (427)
T ss_dssp T--TCEEEEECTTCSTTTSCCCS-CBCCSEEEEEHHHHTSCG----GGCCEEEEECCHHHHHHHHHHHH-----------
T ss_pred c--CCCEEEeecccCCCCCcccc-CCCceEEEEeChhcCCCC----CceEEEEEECCHHHHHHHHHHHH-----------
Confidence 3 56788897754211111111 146789999999998543 5679999995 666554321100
Q ss_pred CCCCCCcccccchhhhHHHHHHHHHHHh---------c-hhhHHHHHHHHHHHHHHHHHHHhccCCeeE---c-------
Q 001990 836 SQPLGTIAAAPWGSALILPISYTYIAMM---------G-SKGLTEASKIAILNANYMAKRLEKHYPILF---R------- 895 (985)
Q Consensus 836 ~~~t~~i~s~~~g~~~~~~~A~a~l~~l---------g-~~gl~~~~~~~~~~a~~l~~~L~~~~~i~~---~------- 895 (985)
..+.+++. ..+. ++..+|... + .+-+.+..++..++.+++.+.|++...+.. .
T Consensus 280 -~~~~~~~~--~~q~----a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~ 352 (427)
T 2hox_A 280 -KNTEGTPR--ETQL----RSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNY 352 (427)
T ss_dssp -HHTSSCCH--HHHH----HHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETT
T ss_pred -hcCCCCCH--HHHH----HHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCcccccccccccccc
Confidence 00011111 1111 112223221 1 112334445666778889999976312211 0
Q ss_pred ----CCCCceeEEEEEEecCccccCCCCHHHHHHHHH-HCCCccCC-CCCCC-CCEEEEeccCCCCHHhhchHHHHHHHH
Q 001990 896 ----GVNGTVAHEFIVDLRGLKNTAGIEPEDVAKRLM-DYGFHGPT-MSWPV-PGTLMIEPTESESKVCHNREDLFFQIL 968 (985)
Q Consensus 896 ----g~~~~~~~~~vv~~~~~~~~~g~~~~~l~~~L~-e~Gi~~~~-~~~pv-~~~lris~t~~~t~eeId~~~~~i~aL 968 (985)
.+++.. .+.++++ . +..++++.|. ++||.+.. ..|+. ++.+|+|+. +++++++ ++++.|
T Consensus 353 ~~~~~p~~g~--f~~~~~~------~-~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~--~~~e~l~---~~l~~l 418 (427)
T 2hox_A 353 FRRMRPPSPS--YAWVKCE------W-EEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLI--KTQDDFD---QLMYYL 418 (427)
T ss_dssp TTEEECCCCS--EEEEEEC------S-GGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECS--SCHHHHH---HHHHHH
T ss_pred ccccCCCCce--EEEEECC------C-cHHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEec--CCHHHHH---HHHHHH
Confidence 111112 1335553 1 3345677764 78998743 22332 578999997 4888899 998888
Q ss_pred HHHHH
Q 001990 969 LSLTK 973 (985)
Q Consensus 969 ~~i~~ 973 (985)
+++++
T Consensus 419 ~~~~~ 423 (427)
T 2hox_A 419 KDMVK 423 (427)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87653
No 448
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.22 E-value=1.9e-09 Score=126.22 Aligned_cols=286 Identities=14% Similarity=0.048 Sum_probs=161.1
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhh-h--c--CCCCEEEEcC-CCChhHHHHHHHhh--------c-
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI-Q--K--GKKKTFIIAS-NCHPQTIDICITRA--------D- 277 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~-~--~--~~g~~Vlv~~-~~h~s~~~~~~~~a--------~- 277 (985)
..++.+.++++++.+...+.+++||+.++++++.+.+. . + .++++||+.+ .-|......+..-. .
T Consensus 97 ~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 176 (460)
T 3gju_A 97 SITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDL 176 (460)
T ss_dssp HHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTC
T ss_pred HHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCC
Confidence 44567889999876667788899999999988755432 1 0 1568888766 55555544432100 0
Q ss_pred -CCCeEEEEeC-------------------chhhhc-cC----CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCc
Q 001990 278 -GFDIKVVVSD-------------------LKDIDY-KS----GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGV 327 (985)
Q Consensus 278 -~~gi~v~~~~-------------------~~~l~~-l~----~~t~~V~v~~p-n~~G~i~d----l~~I~~~a~~~ga 327 (985)
..++..+..+ .++|++ +. +++++|++..+ +..|.+.+ +++|.++|+++|+
T Consensus 177 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~ 256 (460)
T 3gju_A 177 PRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDV 256 (460)
T ss_dssp SCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTC
T ss_pred CCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCC
Confidence 1133333322 245655 43 56787777655 46777665 9999999999999
Q ss_pred EEEEEecccc-ccCCCCC---Cccc--ceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceE
Q 001990 328 KVVMATDLLA-LTILKPP---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALR 401 (985)
Q Consensus 328 lliV~a~~~a-lg~l~~p---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~ 401 (985)
++++| +..+ +|-.... ..+| .|+++. +|.|++ |+..+|++.+++++++.+.... +. ... +
T Consensus 257 llI~D-Ev~~g~gr~g~~~~~~~~~~~pdi~t~-sK~l~g----G~~~lg~v~~~~~i~~~~~~~~-----~~-~~~-~- 322 (460)
T 3gju_A 257 LLVAD-EVVTGFGRLGTMFGSDHYGIKPDLITI-AKGLTS----AYAPLSGVIVADRVWQVLVQGS-----DK-LGS-L- 322 (460)
T ss_dssp EEEEE-CTTTTTTTTSSSCHHHHHTCCCSEEEE-CGGGTT----TSSCCEEEEEEHHHHHHHHHHH-----HH-HCS-C-
T ss_pred EEEEe-ccccCCCcccccchHhhcCCCCCeeee-ehhhcC----CCCCeEEEEECHHHHHHHhccc-----cc-ccc-c-
Confidence 99995 3332 4322111 1123 466654 488752 3234678888988877651000 00 000 0
Q ss_pred EecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH----hcCCCEEEcC-CCCcc
Q 001990 402 VAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGL----KKLGTVEVQG-LPFFD 476 (985)
Q Consensus 402 l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L----~~~g~~~~~~-~~~~~ 476 (985)
....|.+. ++.+..+..+++ ..+..++ +.++..++.+++++.| ++.+.+..+. ...+-
T Consensus 323 -----------~~~~t~~~-~~~~~aaa~aal--~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~ 385 (460)
T 3gju_A 323 -----------GHGWTYSA-HPICVAAGVANL--ELIDEMD---LVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLA 385 (460)
T ss_dssp -----------SCCCTTTT-CHHHHHHHHHHH--HHHHHTT---HHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEE
T ss_pred -----------ccCCCCCC-CHHHHHHHHHHH--HHHHhcc---HHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEE
Confidence 00111111 111222222222 3322233 3344444445555444 4443233221 11121
Q ss_pred eEEEecC-----------C-HHHHHHHHHHcCceeeeec-CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 477 TVKVKCA-----------D-AHAIASAAYKIEMNLRVVD-SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 477 ~~~i~~~-----------~-~~~l~~~L~~~Gi~~~~~~-~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.+.+..+ . +.++.+.|.++||.++... ++.+|++++...|++|+++++++|..
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~ 451 (460)
T 3gju_A 386 AVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQGDILGFAPPLCLTREQADIVVSKTAD 451 (460)
T ss_dssp EEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECSSSCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2222111 1 5678999999999887653 48999999999999999999999974
No 449
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.20 E-value=3.6e-09 Score=123.51 Aligned_cols=275 Identities=14% Similarity=0.118 Sum_probs=157.1
Q ss_pred HHHHHHHHHHhhCCC-CcceeeccchHHHHHHHHHH-hhhhcCCCCEEEEcCC-CChhHHHHHHHhh------cC---C-
Q 001990 213 LLNFQTMIADLTGLP-MSNASLLDEGTAAAEAMAMC-NNIQKGKKKTFIIASN-CHPQTIDICITRA------DG---F- 279 (985)
Q Consensus 213 i~e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~~a-~~~~~~~g~~Vlv~~~-~h~s~~~~~~~~a------~~---~- 279 (985)
..++.+.++++++.+ ...+.++++||.++++++.. +.+. ++++||+.+. -|..+...+..-. .. .
T Consensus 106 ~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~--g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~ 183 (451)
T 3oks_A 106 YVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHT--HKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFA 183 (451)
T ss_dssp HHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHH--CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCC
T ss_pred HHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhc--CCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCC
Confidence 345667889998754 35688889999999988743 3334 5678887664 5544443332100 01 1
Q ss_pred -CeEEEEeCc----------------hhhh-------c-cC-CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcE
Q 001990 280 -DIKVVVSDL----------------KDID-------Y-KS-GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVK 328 (985)
Q Consensus 280 -gi~v~~~~~----------------~~l~-------~-l~-~~t~~V~v~~p-n~~G~i~d----l~~I~~~a~~~gal 328 (985)
++.....+. ++++ + ++ +++++|++... +..|.+.+ +++|.++|+++|++
T Consensus 184 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~ 263 (451)
T 3oks_A 184 PEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVV 263 (451)
T ss_dssp SSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCE
T ss_pred CCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCE
Confidence 333332220 1121 2 23 35666666543 35677765 99999999999999
Q ss_pred EEEEecccc-ccCCCCC---Cccc--ceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEE
Q 001990 329 VVMATDLLA-LTILKPP---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRV 402 (985)
Q Consensus 329 liV~a~~~a-lg~l~~p---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l 402 (985)
+++| +..+ +|..... ..+| .|+++. +|.|++ |-.+|++.+++++++.+.....
T Consensus 264 lI~D-Ev~~g~g~~g~~~~~~~~~~~pdi~t~-sK~l~~-----G~~iG~v~~~~~~~~~~~~~~~-------------- 322 (451)
T 3oks_A 264 FIAD-EVQTGFARTGAMFACEHEGIDPDLIVT-AKGIAG-----GLPLSAVTGRAEIMDSPHVSGL-------------- 322 (451)
T ss_dssp EEEE-CTTTTTTTTSSSSGGGGGTCCCSEEEE-CGGGGT-----TSSCEEEEEEHHHHTCSCTTSB--------------
T ss_pred EEEE-ecccCCCccccchhhhhcCCCCCeeee-hhhhhC-----CcceEEEEECHHHHhhhcCCCc--------------
Confidence 9995 3322 3321111 1233 577643 488863 2346788889988877621100
Q ss_pred ecccccccccccccCCCccchhH-HHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcC----CCEEEc-CCCCcc
Q 001990 403 AMQTREQHIRRDKATSNICTAQA-LLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQ-GLPFFD 476 (985)
Q Consensus 403 ~l~tre~~~rre~atsni~t~~~-l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~-~~~~~~ 476 (985)
..|.+ .+.. ..+..+++ ..+..+ ++.++..++.+++++.|+++ +.+..+ +...+-
T Consensus 323 ------------~~t~~--~~~~~~aaa~aal--~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~ 383 (451)
T 3oks_A 323 ------------GGTYG--GNPIACAAALATI--ETIESE---GLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMI 383 (451)
T ss_dssp ------------CCSSS--SCHHHHHHHHHHH--HHHHHT---THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEE
T ss_pred ------------CCCCC--CCHHHHHHHHHHH--HHHhhh---hHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEE
Confidence 11111 1111 21222222 322222 34555566666666666543 323322 111122
Q ss_pred eEEEec-----CC---HHHHHHHHHHcCceeeeec--CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 477 TVKVKC-----AD---AHAIASAAYKIEMNLRVVD--SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 477 ~~~i~~-----~~---~~~l~~~L~~~Gi~~~~~~--~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.+.+.. +. ..++.+.|.++||.+.... ++.+|++++..+|++++++++++|..
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~ 446 (451)
T 3oks_A 384 AMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEE 446 (451)
T ss_dssp EEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 233321 22 6788999999999886643 48899999999999999999999863
No 450
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.20 E-value=1.3e-09 Score=127.55 Aligned_cols=281 Identities=12% Similarity=0.107 Sum_probs=159.4
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhh-h--c--CCCCEEEEcC-CCChhHHHHHHHhhc--------C
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNI-Q--K--GKKKTFIIAS-NCHPQTIDICITRAD--------G 278 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~-~--~--~~g~~Vlv~~-~~h~s~~~~~~~~a~--------~ 278 (985)
..++.+.++++++.+...+.+++||+.++++++.+.+. . + .++++||+.+ .-|......+..-.. .
T Consensus 96 ~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 175 (459)
T 4a6r_A 96 VVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDL 175 (459)
T ss_dssp HHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CC
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCC
Confidence 34566789999987777788899999999988755432 1 0 1468888766 455444433321000 0
Q ss_pred --CCeEEEEeC------------------chhhhc-cC----CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcE
Q 001990 279 --FDIKVVVSD------------------LKDIDY-KS----GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVK 328 (985)
Q Consensus 279 --~gi~v~~~~------------------~~~l~~-l~----~~t~~V~v~~p-n~~G~i~d----l~~I~~~a~~~gal 328 (985)
.++..+.++ +++|++ +. +++++|++..+ +..|.+.+ +++|.++|+++|++
T Consensus 176 ~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~l 255 (459)
T 4a6r_A 176 PIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVL 255 (459)
T ss_dssp SCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCE
T ss_pred CCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCE
Confidence 133333221 345655 43 46777777544 46777776 99999999999999
Q ss_pred EEEEecccc-ccCCCCC---Ccc--cceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEE
Q 001990 329 VVMATDLLA-LTILKPP---GEL--GADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRV 402 (985)
Q Consensus 329 liV~a~~~a-lg~l~~p---~~~--GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l 402 (985)
+++| +..+ +|-.... ..+ ..|+++. +|.+++ ||-.+|++.+++++.+.+... .. +
T Consensus 256 lI~D-Ev~~g~gr~G~~~~~~~~~~~pdi~t~-sK~l~g----g~~~lg~v~~~~~i~~~~~~~----------~~-~-- 316 (459)
T 4a6r_A 256 LVAD-EVICGFGRTGEWFGHQHFGFQPDLFTA-AKGLSS----GYLPIGAVFVGKRVAEGLIAG----------GD-F-- 316 (459)
T ss_dssp EEEE-CTTTTTTTTSSSSHHHHHTCCCSEEEE-CGGGGT----TSSCCEEEEECHHHHHHHHHH----------CT-T--
T ss_pred EEEe-ccccCCCcccccchHhhcCCCCCeeeh-hhhhcC----CCCCccceeeCHHHHHHhhcC----------CC-c--
Confidence 9995 3322 3322111 112 3577654 387752 333568888899887765200 00 0
Q ss_pred ecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHH-HHHHHHHHHH----hcCCCEEEcC-CCCcc
Q 001990 403 AMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVH-GLAGTFALGL----KKLGTVEVQG-LPFFD 476 (985)
Q Consensus 403 ~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~-~~a~~l~~~L----~~~g~~~~~~-~~~~~ 476 (985)
....|.+. ++.+..+..++ +..+..++ +.++.. ++.+++++.| .+.+.+..+. ...+-
T Consensus 317 ----------~~~~t~~~-~~~~~aaa~aa--l~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~ 380 (459)
T 4a6r_A 317 ----------NHGFTYSG-HPVCAAVAHAN--VAALRDEG---IVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQ 380 (459)
T ss_dssp ----------HHHHHHCS-CHHHHHHHHHH--HHHHHHTC---HHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETTEE
T ss_pred ----------ccCCCCCC-CHHHHHHHHHH--HHHHhcch---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEE
Confidence 00011111 11111122222 23222233 334444 4555555555 4433233221 11111
Q ss_pred eEEEecC----------C--HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 477 TVKVKCA----------D--AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 477 ~~~i~~~----------~--~~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.+.+..+ . +.++.+.|.++||.++... +.+|++++...|++|+++++++|..
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~~~~~~t~e~i~~~l~~l~~ 444 (459)
T 4a6r_A 381 AFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACG-DHIVSAPPLVMTRAEVDEMLAVAER 444 (459)
T ss_dssp EEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEEEecCccccccccchHHHHHHHHHHHHHCCeEEecCC-CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2222110 1 5678899999999987653 8999999999999999999999975
No 451
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=98.83 E-value=1.5e-12 Score=148.97 Aligned_cols=271 Identities=11% Similarity=0.059 Sum_probs=166.3
Q ss_pred HHHHHHHHh----hC--CCCcceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeC-
Q 001990 215 NFQTMIADL----TG--LPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSD- 287 (985)
Q Consensus 215 e~q~~ia~L----~g--~~~~~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~- 287 (985)
++++.++++ .| .+..++.+++|++.++++++.++. . +||+|+++...|+.+...++ ..|.+++.++
T Consensus 70 ~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~-~--~gd~vl~~~p~~~~~~~~~~----~~g~~~~~~~~ 142 (392)
T 3b1d_A 70 ELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFT-K--EGEAVLINSPVYPPFARSVR----LNNRKLVSNSL 142 (392)
Confidence 344455554 45 445678888898988887766542 2 78999999999988877654 3455555543
Q ss_pred ----------chhhhc-cC-CCEeEEEEEcC-CCCeeecc---HHHHHHHHHhCCcEEEEEeccccccCC-----CCC--
Q 001990 288 ----------LKDIDY-KS-GDVCGVLVQYP-GTEGEVLD---YGDFIKNAHANGVKVVMATDLLALTIL-----KPP-- 344 (985)
Q Consensus 288 ----------~~~l~~-l~-~~t~~V~v~~p-n~~G~i~d---l~~I~~~a~~~galliV~a~~~alg~l-----~~p-- 344 (985)
++++++ +. +++++|++.+| |.+|.+.+ +++|+++|+++|+++++|. ..+.... .+.
T Consensus 143 ~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De-~~~~~~~~g~~~~~~~~ 221 (392)
T 3b1d_A 143 KEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDE-IHQDLTLFGHEHVSFNT 221 (392)
Confidence 344555 55 67888988888 67998864 9999999999999999942 2221111 011
Q ss_pred -Cc--ccceEEEecC-ccccccCCCCCCceEEEEEch-hhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCC
Q 001990 345 -GE--LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQ-EYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSN 419 (985)
Q Consensus 345 -~~--~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~-~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsn 419 (985)
.. .+.+++++|. |.|+. +|..+|++.+++ ++++.+.... ....
T Consensus 222 ~~~~~~~~~i~~~s~sK~~~~----~G~r~G~~~~~~~~~~~~~~~~~----------------------------~~~~ 269 (392)
T 3b1d_A 222 VSPDFKDFALVLSSATKTFNI----AGTKNSYAIIENPTLCAQFKHQQ----------------------------LVNN 269 (392)
Confidence 11 4566888887 88853 244568888764 3555441100 0000
Q ss_pred ccchhHHHHHHHHH-HHHHcCcchHHHHHHHHHHHHHHHHHHHhc-CCCEEEcCC--CCcceEEEecC--CHHHHHHHHH
Q 001990 420 ICTAQALLANMAAM-YAVYHGPEGLKTIAQRVHGLAGTFALGLKK-LGTVEVQGL--PFFDTVKVKCA--DAHAIASAAY 493 (985)
Q Consensus 420 i~t~~~l~a~~aa~-y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~-~g~~~~~~~--~~~~~~~i~~~--~~~~l~~~L~ 493 (985)
+++...+ +..++. .+. .+.+.++++.++..++.+++.+.|++ ++++++... .++-.+.+... ...++.+.|.
T Consensus 270 ~~~~~~~-~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~l~ 347 (392)
T 3b1d_A 270 HHEVSSL-GYIATETAYR-YGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQGTYLIWLDFSDYGLTDDALFTLLH 347 (392)
Confidence 1111111 111111 112 23455777888888899999999987 533766532 11111222211 1567888886
Q ss_pred -HcCceeeee------cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 494 -KIEMNLRVV------DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 494 -~~Gi~~~~~------~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
++||.+... .++.+|++++. +++++++.++.|..
T Consensus 348 ~~~gi~v~~g~~f~~~~~~~iRi~~~~--~~e~i~~~l~~l~~ 388 (392)
T 3b1d_A 348 DQAKVILNRGSDYGSEGELHARLNIAA--PKSLVEEICKRIVC 388 (392)
Confidence 789987542 24679999775 57889988888864
No 452
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.19 E-value=2.8e-09 Score=125.16 Aligned_cols=280 Identities=11% Similarity=0.101 Sum_probs=165.3
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhh-hh--c--CCCCEEEEcC-CCChhHHHHHHHhh---------c
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQ--K--GKKKTFIIAS-NCHPQTIDICITRA---------D 277 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~--~--~~g~~Vlv~~-~~h~s~~~~~~~~a---------~ 277 (985)
..++.+.++++++.+...+.++++|+.++++++.+.+ +. + .++++||+.+ .-|......+..-. .
T Consensus 101 ~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~ 180 (472)
T 3hmu_A 101 AIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGL 180 (472)
T ss_dssp HHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCC
Confidence 3456678999997766678888999999998875443 21 1 1467788666 55655544432100 0
Q ss_pred CCCeEEEEeC------------------chhhhc-cC----CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEE
Q 001990 278 GFDIKVVVSD------------------LKDIDY-KS----GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKV 329 (985)
Q Consensus 278 ~~gi~v~~~~------------------~~~l~~-l~----~~t~~V~v~~p-n~~G~i~d----l~~I~~~a~~~gall 329 (985)
..++..+..+ .++|++ +. +++++|++..+ +..|.+.+ +++|.++|+++|+++
T Consensus 181 ~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gill 260 (472)
T 3hmu_A 181 IPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILL 260 (472)
T ss_dssp CSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEE
T ss_pred CCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 0133333221 344555 43 56777777655 56788877 999999999999999
Q ss_pred EEEeccc-cccCCCCCC---ccc--ceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEe
Q 001990 330 VMATDLL-ALTILKPPG---ELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVA 403 (985)
Q Consensus 330 iV~a~~~-alg~l~~p~---~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~ 403 (985)
++| +.. .+|-..... .+| .|+++. +|.+++ ||-.+|++.+++++++.+..+. +
T Consensus 261 I~D-Ev~~gfgr~G~~~a~~~~~v~pdi~t~-sK~l~g----g~~plG~v~~~~~i~~~~~~~~------------~--- 319 (472)
T 3hmu_A 261 IAD-EVICGFGRTGNWFGTQTMGIRPHIMTI-AKGLSS----GYAPIGGSIVCDEVAHVIGKDE------------F--- 319 (472)
T ss_dssp EEE-CTTTTTTTTSSSCHHHHHTCCCSEEEE-CGGGTT----TSSCCEEEEEEHHHHHHHTTSC------------B---
T ss_pred EEE-ccccCCcccCccchhHHhCCCCceeee-chhhhc----CCcceEEEEECHHHHHhcccCC------------c---
Confidence 995 332 233221111 122 577654 387752 3334578888998887762110 0
Q ss_pred cccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHH-HHHHHHHHHHhcC---CCEEEc-CCCCcceE
Q 001990 404 MQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVH-GLAGTFALGLKKL---GTVEVQ-GLPFFDTV 478 (985)
Q Consensus 404 l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~-~~a~~l~~~L~~~---g~~~~~-~~~~~~~~ 478 (985)
....|.+. .+.+..+..+++ ..+..+ ++.++.. ++.+++++.|+++ +.+..+ +...+-.+
T Consensus 320 ---------~~~~t~~~-np~a~aAa~aaL--~~~~~~---~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i 384 (472)
T 3hmu_A 320 ---------NHGYTYSG-HPVAAAVALENL--RILEEE---NILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASI 384 (472)
T ss_dssp ---------CCCCTTTT-CHHHHHHHHHHH--HHHHHT---THHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEETTEEEE
T ss_pred ---------cccCCCCC-CHHHHHHHHHHH--HHHHHh---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceEEE
Confidence 00111111 111222222222 333222 3556666 7778888888664 213222 11111122
Q ss_pred EEecC-----------C--HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 479 KVKCA-----------D--AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 479 ~i~~~-----------~--~~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.+..+ . +.++.+.|.++||.++... +.+|++++...|++|+++++++|..
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~p~~~~t~e~i~~~l~~l~~ 447 (472)
T 3hmu_A 385 ALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVG-DRMIISPPLVITPAEIDEMFVRIRK 447 (472)
T ss_dssp EECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEET-TEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEecCccccccccchhHHHHHHHHHHHHHCCcEEEecC-CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22211 2 5678899999999987654 8999999999999999999999975
No 453
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.19 E-value=8.6e-11 Score=134.23 Aligned_cols=271 Identities=11% Similarity=0.034 Sum_probs=161.8
Q ss_pred HHHHHHHHhh---C---CCCcceee--ccchHHHHHHHHHHhh-hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEE
Q 001990 215 NFQTMIADLT---G---LPMSNASL--LDEGTAAAEAMAMCNN-IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVV 285 (985)
Q Consensus 215 e~q~~ia~L~---g---~~~~~~sl--~~~~ta~~ea~~~a~~-~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~ 285 (985)
++++.+|+++ + .++.++.+ +.|+|.+++.++.++. +. +||+|+++...|+.+...++. .|.+++.
T Consensus 73 ~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~--~gd~Vl~~~p~y~~~~~~~~~----~g~~~~~ 146 (396)
T 2q7w_A 73 EFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNT--SVKRVWVSNPSWPNHKSVFNS----AGLEVRE 146 (396)
T ss_dssp HHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHS--CCCEEEEEESCCTHHHHHHHH----TTCEEEE
T ss_pred HHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhC--CCCEEEEcCCCchhHHHHHHH----cCCceEE
Confidence 4667778777 2 13456776 8999988887765443 23 789999999999998887653 4777776
Q ss_pred eCc----------hhhhc-cCC---CEeEEEEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEeccccccCCC-----
Q 001990 286 SDL----------KDIDY-KSG---DVCGVLVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTILK----- 342 (985)
Q Consensus 286 ~~~----------~~l~~-l~~---~t~~V~v~~p-n~~G~i~---dl~~I~~~a~~~galliV~a~~~alg~l~----- 342 (985)
++. +++++ +++ +++++++.+| |.+|.+. ++++|+++|+++|+++++|. ..+.....
T Consensus 147 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De-~~~~~~~~~~~~~ 225 (396)
T 2q7w_A 147 YAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDF-AYQGFARGLEEDA 225 (396)
T ss_dssp EECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEE-SCTTSSSCHHHHT
T ss_pred EecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEec-ccccccCCccchh
Confidence 654 34554 442 4777777888 6799885 56789999999999999953 22211110
Q ss_pred -CCC---cc-cceEEEecC-ccccccCCCCCCceEEEEE---chhhHhcCCCceeeeeecCCCCcceEEecccccccccc
Q 001990 343 -PPG---EL-GADIVVGSA-QRFGVPMGYGGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR 413 (985)
Q Consensus 343 -~p~---~~-GaDi~v~s~-k~lg~P~~~GGP~~G~l~~---~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rr 413 (985)
+.. .. .-+++++|. |.++.| |-.+|++++ +++.++.+-.. + ....+
T Consensus 226 ~~~~~~~~~~~~~i~~~s~sK~~~~~----G~riG~~~~~~~~~~~~~~~~~~-----------------~----~~~~~ 280 (396)
T 2q7w_A 226 EGLRAFAAMHKELIVASSYSXNFGLY----NERVGACTLVAADSETVDRAFSQ-----------------M----KAAIR 280 (396)
T ss_dssp HHHHHHHHHCSCEEEEEECTTTTTCG----GGCCEEEEEECSSHHHHHHHHHH-----------------H----HHHHH
T ss_pred HHHHHHHhcCCcEEEEEecccccccc----ccccceEEEEcCCHHHHHHHHHH-----------------H----HHHHh
Confidence 011 12 245778886 766532 222588886 55433222000 0 00001
Q ss_pred cccCCCccchhHHHHHHHHHHHHHc-----CcchHHHHHHHHHHHHHHHHHHHhcCC---CEEEcCCCCcceEEE-ecCC
Q 001990 414 DKATSNICTAQALLANMAAMYAVYH-----GPEGLKTIAQRVHGLAGTFALGLKKLG---TVEVQGLPFFDTVKV-KCAD 484 (985)
Q Consensus 414 e~atsni~t~~~l~a~~aa~y~~~~-----g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~~~~~~~~~~~~i-~~~~ 484 (985)
.+.+.++.....+..+++ ... -.+.++++.++..++.+++.+.|+++| ++++.. +...-+.+ ..+
T Consensus 281 --~~~~~~~~~~~~a~~~~l--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~- 354 (396)
T 2q7w_A 281 --ANYSNPPAHGASVVATIL--SNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFII-KQNGMFSFSGLT- 354 (396)
T ss_dssp --TTTSSCCHHHHHHHHHHH--TSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHH-HCCSSEEECCCC-
T ss_pred --hccCCCCcHHHHHHHHHh--cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceec-CCCceEEEecCC-
Confidence 111111112222222211 100 024577788888899999999999875 244331 11111222 222
Q ss_pred HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001990 485 AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 485 ~~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~ 528 (985)
...+.+.|.++||.+.. .+|++++.. |++++++++++|.
T Consensus 355 ~~~~~~~l~~~gv~v~~----~~Ris~~~~-~~e~i~~~~~~l~ 393 (396)
T 2q7w_A 355 KEQVLRLREEFGVYAVA----SGRVNVAGM-TPDNMAPLCEAIV 393 (396)
T ss_dssp HHHHHHHHHHHCEECCT----TCEEEGGGC-CTTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCeeecC----CceEEEeec-CHHHHHHHHHHHH
Confidence 55666777788998864 379999854 8999999999986
No 454
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.18 E-value=2.4e-09 Score=124.86 Aligned_cols=271 Identities=11% Similarity=0.063 Sum_probs=149.8
Q ss_pred HHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhh-hhcCCCCEEEEcCCCCh-hHHHHHHHh------hcCCCeE----
Q 001990 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQKGKKKTFIIASNCHP-QTIDICITR------ADGFDIK---- 282 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~~~~g~~Vlv~~~~h~-s~~~~~~~~------a~~~gi~---- 282 (985)
++.+.++++++ +..++.+++||+.++++++.+.+ +. ++++||+.+..|+ .....+... ....|+.
T Consensus 101 ~la~~l~~~~~-~~~~v~~~~gg~eA~~~al~~ar~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~ 177 (453)
T 2cy8_A 101 RWAERIVAAFP-SIRKLRFTGSGTETTLLALRVARAFT--GRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETT 177 (453)
T ss_dssp HHHHHHHHHCT-TCSEEEEESCHHHHHHHHHHHHHHHH--CCCEEEEECC----------------------------CG
T ss_pred HHHHHHHhhCC-CCCEEEEeCCHHHHHHHHHHHHHHhh--CCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCcccc
Confidence 44567777775 45578888999998888766532 34 5577887775444 332221100 0012332
Q ss_pred --EEEe---Cchhhhc-cC---CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEeccccccCC-CCCC--
Q 001990 283 --VVVS---DLKDIDY-KS---GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLALTIL-KPPG-- 345 (985)
Q Consensus 283 --v~~~---~~~~l~~-l~---~~t~~V~v~~p-n~~G~i~d----l~~I~~~a~~~galliV~a~~~alg~l-~~p~-- 345 (985)
+..+ |+++|++ +. +++++|++... +.+|.+.+ +++|.++|+++|+++++| +..+ |+. ....
T Consensus 178 ~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~D-Ev~~-g~~~g~~~~~ 255 (453)
T 2cy8_A 178 ANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILD-EVIS-GFRVGNHGMQ 255 (453)
T ss_dssp GGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEE-CTTT-TTTTCTTHHH
T ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe-cCcc-ccccCchhhh
Confidence 3333 4456665 54 47887776543 45898877 999999999999999995 3333 331 1111
Q ss_pred -cc--cceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccc
Q 001990 346 -EL--GADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICT 422 (985)
Q Consensus 346 -~~--GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t 422 (985)
.+ ..|++.. +|.|++ |..+|++++++++++.+.....+ + + ...+|.+. +
T Consensus 256 ~~~~~~~di~s~-sK~l~~-----G~~~G~v~~~~~~~~~l~~~~~~--------~-~------------~~~~t~~~-n 307 (453)
T 2cy8_A 256 ALLDVQPDLTCL-AKASAG-----GLPGGILGGREDVMGVLSRGSDR--------K-V------------LHQGTFTG-N 307 (453)
T ss_dssp HHHTCCCSEEEE-EGGGGT-----TSSCEEEEECHHHHTTSSSCC------------------------------CCC-C
T ss_pred HHhCCCCcEEEE-ChhhhC-----CcceEEEechHHHHHHhccccCC--------C-c------------eeCCCCCC-C
Confidence 12 3587532 388862 33478999999888776321000 0 0 00112111 1
Q ss_pred hhHHHHHHHHHHHHH-cCcchHHHHHHHHHHHHHHHHHHHhcC----CCE-E-EcCCCCcceEEEec-----C-------
Q 001990 423 AQALLANMAAMYAVY-HGPEGLKTIAQRVHGLAGTFALGLKKL----GTV-E-VQGLPFFDTVKVKC-----A------- 483 (985)
Q Consensus 423 ~~~l~a~~aa~y~~~-~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~-~-~~~~~~~~~~~i~~-----~------- 483 (985)
+....+..+++ .. + .+ ++.++..++.+++++.|+++ + + . +.+...+-.+.+.. .
T Consensus 308 ~~~~aa~~aal--~~~~-~~---~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~ 380 (453)
T 2cy8_A 308 PITAAAAIAAI--DTIL-ED---DVCAKINDLGQFAREAMNHLFARKG-LNWLAYGRFSGFHLMPGLPPNTTDTGSITRA 380 (453)
T ss_dssp HHHHHHHHHHH--HHHH-HT---THHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECCTTEEEEEETSCTTCCCCHHHHTT
T ss_pred HHHHHHHHHHH--HHHh-hh---hHHHHHHHHHHHHHHHHHHHHhhCC-CcEEEEEeeeEEEEEEecccccccccccccc
Confidence 11222222232 33 3 33 35567777888888888654 3 2 1 21221221233321 1
Q ss_pred -----C---HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 484 -----D---AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 484 -----~---~~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
. ..++.+.|.++||.++. .+.++ +...++++|+++++++|..
T Consensus 381 ~~~~~~~~~~~~l~~~l~~~Gv~v~~--~~~~~--l~~~~t~~~i~~~l~~l~~ 430 (453)
T 2cy8_A 381 EVARPDVKMIAAMRMALILEGVDIGG--RGSVF--LSAQHEREHVEHLVTTFDR 430 (453)
T ss_dssp CSCCCCHHHHHHHHHHHHHTTEECBT--TTEEE--CCTTCCHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHCCeEEeC--CCCEE--eeccCCHHHHHHHHHHHHH
Confidence 1 56788999999998853 24444 5678999999999999974
No 455
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.17 E-value=1.3e-09 Score=126.24 Aligned_cols=275 Identities=11% Similarity=0.116 Sum_probs=151.7
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhh-hhcCCCCEEEEcC-CCChhHHHHHHHh---------hcCCCe
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQKGKKKTFIIAS-NCHPQTIDICITR---------ADGFDI 281 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~~~~g~~Vlv~~-~~h~s~~~~~~~~---------a~~~gi 281 (985)
..++.+.++++++ +...+.++++||.++++++...+ .. ++++||+.+ ..|..+...+... ....++
T Consensus 95 ~~~la~~l~~~~~-~~~~v~~~~sGsea~~~al~~a~~~~--~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~ 171 (429)
T 4e77_A 95 EVKMAQLVTDLVP-TMDMVRMVNSGTEATMSAIRLARGYT--GRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGV 171 (429)
T ss_dssp HHHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHH--CCCEEEEETTCCCC------------------CCCTTS
T ss_pred HHHHHHHHHhhCC-CCCEEEEeCcHHHHHHHHHHHHHHhh--CCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCC
Confidence 3456678889886 45568888999998888765332 33 567777665 5555544322100 001111
Q ss_pred ------EEEEe---Cchhhhc-cC---CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEecccc---ccC
Q 001990 282 ------KVVVS---DLKDIDY-KS---GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLA---LTI 340 (985)
Q Consensus 282 ------~v~~~---~~~~l~~-l~---~~t~~V~v~~p-n~~G~i~d----l~~I~~~a~~~galliV~a~~~a---lg~ 340 (985)
.+..+ |+++|++ +. +++++|++... +..|.+.+ +++|.++|+++|+++++|. ..+ .|.
T Consensus 172 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DE-v~~g~r~g~ 250 (429)
T 4e77_A 172 PTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDE-VMTGFRVAL 250 (429)
T ss_dssp CGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEE-TTTBTTTBT
T ss_pred CCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEec-cccCcccCc
Confidence 22233 4456665 42 56777776544 35688887 9999999999999999952 333 121
Q ss_pred CCCCCccc--ceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCC
Q 001990 341 LKPPGELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATS 418 (985)
Q Consensus 341 l~~p~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~ats 418 (985)
......+| .|+++. +|.|++ |-.+|++.+++++++.+... ... ...+|.
T Consensus 251 ~~~~~~~~~~pdi~t~-sK~~~~-----G~~~G~~~~~~~~~~~l~~~----------~~~-------------~~~~t~ 301 (429)
T 4e77_A 251 AGAQDYYHVIPDLTCL-GKIIGG-----GMPVGAFGGRREVMNALAPT----------GPV-------------YQAGTL 301 (429)
T ss_dssp TCHHHHTTCCCSEEEE-EGGGGT-----TSCCEEEEECHHHHTTBTTT----------SSB-------------CC--CC
T ss_pred chHHHhcCCCCCeeee-cccccC-----CCCeEEEEECHHHHHHhccC----------CCc-------------cccCCC
Confidence 11111233 476533 388862 33468899999888766310 000 001121
Q ss_pred CccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcC----CCEEEcCCCCcceEEEecCC----------
Q 001990 419 NICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQGLPFFDTVKVKCAD---------- 484 (985)
Q Consensus 419 ni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~~~~~i~~~~---------- 484 (985)
+. ++.+..+..+++ ..+..+ ++.++..++.+++++.|+++ + +.........-+.+..++
T Consensus 302 ~~-~~~~~aaa~aal--~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 374 (429)
T 4e77_A 302 SG-NPIAMAAGFACL--TEISQV---GVYETLTELTDSLATGLRHAAKEEN-IPLVVNHVGGMFGLFFTNADTVTCYQDV 374 (429)
T ss_dssp CC-CHHHHHHHHHHH--HHHTST---THHHHHHHHHHHHHHHHHHHHHHTT-CCCEEEEETTEEEEECCSSSCCCSHHHH
T ss_pred CC-CHHHHHHHHHHH--HHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCC-CceEEEEeeeEEEEEEccCccccccccc
Confidence 11 112222222332 333333 45556666777777776553 3 211000000112222221
Q ss_pred -------HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 485 -------AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 -------~~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
..++.+.|.++||.++......++ +...+|++|+++++++|..
T Consensus 375 ~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~--~~~~~t~e~i~~~l~~l~~ 424 (429)
T 4e77_A 375 MNCDVERFKRFFHLMLEEGVYLAPSAFEAGF--MSLAHSNEDIQKTVNAARR 424 (429)
T ss_dssp HTSCHHHHHHHHHHHHHTTEECCSSTTSCEE--CCTTCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHCCeEEeecCCCCEE--EeccCCHHHHHHHHHHHHH
Confidence 378999999999988764334444 5678899999999999974
No 456
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.16 E-value=8.6e-10 Score=127.56 Aligned_cols=273 Identities=13% Similarity=0.159 Sum_probs=154.6
Q ss_pred HHHHHHHHHhhCCCCcceeeccchHHHHHHHHH-HhhhhcCCCCEEEEcC-CCChhHHHHH-------HHh--hcCCCe-
Q 001990 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAM-CNNIQKGKKKTFIIAS-NCHPQTIDIC-------ITR--ADGFDI- 281 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~-a~~~~~~~g~~Vlv~~-~~h~s~~~~~-------~~~--a~~~gi- 281 (985)
.++.+.++++++ +...+.+++|||.++++++. +.... ++++||+.+ .-|..+...+ ..+ ....|+
T Consensus 95 ~~la~~l~~~~~-~~~~v~~~~ggsea~~~al~~a~~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (427)
T 3fq8_A 95 NVLAEMVNDAVP-SIEMVRFVNSGTEACMAVLRIMRAYT--GRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVP 171 (427)
T ss_dssp HHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHH--CCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSC
T ss_pred HHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhh--CCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCC
Confidence 356678889887 55678888999998888763 33334 557777655 4444322111 000 001111
Q ss_pred -----EEEEe---Cchhhhc-cC---CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEeccccccC-CCC
Q 001990 282 -----KVVVS---DLKDIDY-KS---GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLALTI-LKP 343 (985)
Q Consensus 282 -----~v~~~---~~~~l~~-l~---~~t~~V~v~~p-n~~G~i~d----l~~I~~~a~~~galliV~a~~~alg~-l~~ 343 (985)
.+..+ |+++|++ +. +++++|++..+ +..|.+.+ +++|.++|+++|+++++| +..+ |+ ...
T Consensus 172 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D-Ev~~-g~~~g~ 249 (427)
T 3fq8_A 172 KKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFD-EVIT-GFRIAY 249 (427)
T ss_dssp HHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEE-CTTT-BTTTBT
T ss_pred CcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe-cccc-ccccCc
Confidence 12223 4566665 43 37888887765 56888888 999999999999999995 3333 22 000
Q ss_pred ---CCccc--ceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCC
Q 001990 344 ---PGELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATS 418 (985)
Q Consensus 344 ---p~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~ats 418 (985)
...+| .|+++.| |+|+. |=.+|++.+++++++.+... +. + ...+|.
T Consensus 250 ~~~~~~~~~~~di~t~s-K~~~~-----G~~~G~~~~~~~~~~~~~~~----------~~-~------------~~~~t~ 300 (427)
T 3fq8_A 250 GGVQEKFGVTPDLTTLG-KIIGG-----GLPVGAYGGKREIMQLVAPA----------GP-M------------YQAGTL 300 (427)
T ss_dssp THHHHHTTCCCSEEEEC-GGGGT-----TSSCEEEEECHHHHTTBTTT----------SS-B------------CCCCTT
T ss_pred chhhHhcCCCCChhhhh-hhhhC-----CcceEEEEEcHHHHHhhccC----------CC-c------------cccCCC
Confidence 01233 4765443 98862 22368888999888776310 00 0 011222
Q ss_pred CccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcC----CCEEEcCCCCcceEEEecC-----------
Q 001990 419 NICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQGLPFFDTVKVKCA----------- 483 (985)
Q Consensus 419 ni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~~~~~~~~~~i~~~----------- 483 (985)
+. ++.+..+..+++ ..+..+ ++.++..++.+++++.|+++ + +.........-+.+...
T Consensus 301 ~~-~~~~~aa~~aal--~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 373 (427)
T 3fq8_A 301 SG-NPLAMTAGIKTL--ELLRQP---GTYEYLDQITKRLSDGLLAIAQETG-HAACGGQVSGMFGFFFTEGPVHNYEDAK 373 (427)
T ss_dssp TT-CHHHHHHHHHHH--HHHTST---THHHHHHHHHHHHHHHHHHHHHHTT-CCCEEEEETTEEEEESSSCCCCSHHHHT
T ss_pred Cc-CHHHHHHHHHHH--HHHHhc---CHHHHHHHHHHHHHHHHHHHHHhCC-CCeEEEEeeeEEEEEEecCccccccccc
Confidence 11 112222222222 333333 34566666777777777653 2 11000000011222221
Q ss_pred --C---HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 484 --D---AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 484 --~---~~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
. ..++.+.|.++||.++..... |+++...+|++|+++++++|..
T Consensus 374 ~~~~~~~~~l~~~l~~~Gi~v~~~~~~--r~~~~~~~t~e~i~~~l~~l~~ 422 (427)
T 3fq8_A 374 KSDLQKFSRFHRGMLEQGIYLAPSQFE--AGFTSLAHTEEDIDATLAAART 422 (427)
T ss_dssp TSCHHHHHHHHHHHHHTTEECCSSTTS--CEECCTTCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHCCcEEecCCCC--CEEeeCcCCHHHHHHHHHHHHH
Confidence 1 457889999999988754322 6667788999999999999974
No 457
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.15 E-value=6.4e-10 Score=128.98 Aligned_cols=274 Identities=12% Similarity=0.153 Sum_probs=156.6
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhh-hhcCCCCEEEEcCCC-ChhHHHHHH-------Hh--hcCCCe
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQKGKKKTFIIASNC-HPQTIDICI-------TR--ADGFDI 281 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~~~~g~~Vlv~~~~-h~s~~~~~~-------~~--a~~~gi 281 (985)
..++++.++++++ ...++.+++|||.++++++.+.+ +. ++++||+.+.. |......+. .+ -...|+
T Consensus 98 ~~~l~~~la~~~~-~~~~v~~~~sgseA~~~al~~ar~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~ 174 (434)
T 2epj_A 98 EVLLAEKILGYVK-RGGMIRFVNSGTEATMTAIRLARGYT--GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGV 174 (434)
T ss_dssp HHHHHHHHHHHHC-TTCEEEEESSHHHHHHHHHHHHHHHH--CCCEEEEEETCCCCSSGGGSEECC------CEESSTTC
T ss_pred HHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhh--CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCC
Confidence 3456678888884 34568888999999888776432 34 56778776644 442221110 00 001232
Q ss_pred ------EEEEe---Cchhhhc-cC---CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEeccccccCC-C
Q 001990 282 ------KVVVS---DLKDIDY-KS---GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLALTIL-K 342 (985)
Q Consensus 282 ------~v~~~---~~~~l~~-l~---~~t~~V~v~~p-n~~G~i~d----l~~I~~~a~~~galliV~a~~~alg~l-~ 342 (985)
.+..+ |+++|++ +. +++++|+++.. +.+|.+.+ +++|.++|+++|+++++| +..+ |+. .
T Consensus 175 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~D-Ev~~-g~~~g 252 (434)
T 2epj_A 175 PEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILD-EVVT-GFRLG 252 (434)
T ss_dssp CHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEE-ETTT-TTTSS
T ss_pred CCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEE-cchh-ceeCC
Confidence 13333 4566666 54 46887777643 45899888 999999999999999995 2333 221 1
Q ss_pred CCC---c--ccceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccC
Q 001990 343 PPG---E--LGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKAT 417 (985)
Q Consensus 343 ~p~---~--~GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~at 417 (985)
... . ...|++.. +|.|++ |-| +|++++++++++.+... +.. ...+|
T Consensus 253 ~~~~~~~~~~~~di~s~-sK~l~~----G~~-~G~v~~~~~~~~~l~~~---------~~~--------------~~~~t 303 (434)
T 2epj_A 253 LEGAQGYFNIEGDIIVL-GKIIGG----GFP-VGAVAGSREVMSLLTPQ---------GKV--------------FNAGT 303 (434)
T ss_dssp TTHHHHHHTCCCSEEEE-EGGGGT----TSS-CEEEEECHHHHTTBTTT---------SSB--------------CCCCT
T ss_pred cchhhHHhCCCCCeeee-cchhcC----Ccc-eeeeeecHHHHHhhccC---------CCc--------------ccCCC
Confidence 111 1 23687533 388862 223 68899998887765210 000 00112
Q ss_pred CCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcC----CCEE--EcCCCCcceEEEec-C-------
Q 001990 418 SNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVE--VQGLPFFDTVKVKC-A------- 483 (985)
Q Consensus 418 sni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~--~~~~~~~~~~~i~~-~------- 483 (985)
.+. ++....+..+++ ..+.. +++.++..++.+++++.|+++ + +. +.+...+-.+.+.. +
T Consensus 304 ~~~-~~~~~aa~~a~l--~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~ 376 (434)
T 2epj_A 304 FNA-HPITMAAGLATL--KALEE---EPVYSVSREAAKALEEAASEVLDRTG-LPYTINRVESMMQLFIGVEEVSNAAQA 376 (434)
T ss_dssp TTT-CHHHHHHHHHHH--HHHHH---SCHHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEEETTEEEEEETCSCCSSHHHH
T ss_pred CCc-CHHHHHHHHHHH--HHHHh---cCHHHHHHHHHHHHHHHHHHHHhhCC-CcEEEEEeeeEEEEEEeCCCcccchhc
Confidence 111 111222222332 33222 235667777888888888764 4 32 11111121233321 0
Q ss_pred -----C-HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 484 -----D-AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 484 -----~-~~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
. ..++.+.|.++||.+.......+ ++...+|++|+++++++|..
T Consensus 377 ~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~--~~~~~~t~e~i~~~l~~l~~ 426 (434)
T 2epj_A 377 RKADKKFYVKLHEEMLRRGVFIAPSNLEAV--FTGLPHQGEALEIAVEGLRS 426 (434)
T ss_dssp TTSCHHHHHHHHHHHHHTTEECCSSTTSCE--ECCTTCSHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHCCeEEeccCCCcE--EEeccCCHHHHHHHHHHHHH
Confidence 1 56789999999998875433344 45578899999999999974
No 458
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.13 E-value=2.6e-10 Score=133.40 Aligned_cols=269 Identities=14% Similarity=0.087 Sum_probs=155.4
Q ss_pred HHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhhhhcCC-----C----CEEEEcCCCC-hhHHHHHHHhhcCCCeEE
Q 001990 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGK-----K----KTFIIASNCH-PQTIDICITRADGFDIKV 283 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~~~~~~-----g----~~Vlv~~~~h-~s~~~~~~~~a~~~gi~v 283 (985)
.++++.+|+++|.+ ++.+++|||.+.++++.+++ . + | |+|+++ ..| +++...+.. .|..+
T Consensus 77 ~~l~~~la~~~~~~--~v~~t~~gt~A~~~al~~~~-~--~~~~~~G~~~~d~Ii~~-~~h~~t~~~~~~~----~~~~~ 146 (467)
T 2oqx_A 77 YALAESVKNIFGYQ--YTIPTHQGRGAEQIYIPVLI-K--KREQEKGLDRSKMVAFS-NYFFDTTQGHSQI----NGCTV 146 (467)
T ss_dssp HHHHHHHHHHHCCS--EEEEEC--CCSHHHHHHHHH-H--HHHHHHCCCTTTCEEEE-SSCCHHHHHHHHH----TTCEE
T ss_pred HHHHHHHHHHhCcC--cEEEcCCcHHHHHHHHHHHh-c--cccccCCCCccceEEec-ccccccchhhhhc----cCcce
Confidence 45678999999975 47788899888887766543 2 3 5 888877 567 333333322 12222
Q ss_pred EE------------------eCchhhhc-cC----CCEeEEEEEcC-CCC-eee---ccHHHHHHHHHhCCcEEEEEecc
Q 001990 284 VV------------------SDLKDIDY-KS----GDVCGVLVQYP-GTE-GEV---LDYGDFIKNAHANGVKVVMATDL 335 (985)
Q Consensus 284 ~~------------------~~~~~l~~-l~----~~t~~V~v~~p-n~~-G~i---~dl~~I~~~a~~~galliV~a~~ 335 (985)
.. +|+++|++ ++ ++|++|++.+| |.+ |.+ +++++|+++|+++|+++++|+ .
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~-a 225 (467)
T 2oqx_A 147 RNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDS-A 225 (467)
T ss_dssp EECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEEC-T
T ss_pred eeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEc-h
Confidence 21 23456666 54 47999999988 555 765 468999999999999999962 1
Q ss_pred ccc-----------cCCC-CCCc------ccceEEEecC-ccccccCCCCCCceEEEEEchh-hHhc---CCCce-eeee
Q 001990 336 LAL-----------TILK-PPGE------LGADIVVGSA-QRFGVPMGYGGPHAAFLATSQE-YKRM---MPGRI-VGVS 391 (985)
Q Consensus 336 ~al-----------g~l~-~p~~------~GaDi~v~s~-k~lg~P~~~GGP~~G~l~~~~~-~~~~---lp~~~-vG~s 391 (985)
.+. +... ++.. .++|+++.+. |.++.|. .|+++++++ +++. +.... .+
T Consensus 226 ~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~~------Gg~~~~~~~~~~~~~~~~~~~~~~~-- 297 (467)
T 2oqx_A 226 RFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPM------GGLLCMKDDSFFDVYTECRTLCVVQ-- 297 (467)
T ss_dssp THHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSS------CEEEEECSGGGHHHHHHHHHHHHHT--
T ss_pred hhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCCC------ceEEEecChhHHHHHHHHHHhhhcc--
Confidence 121 1111 1222 2488888887 8776542 267777655 3332 21000 00
Q ss_pred ecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcC
Q 001990 392 IDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG 471 (985)
Q Consensus 392 ~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~ 471 (985)
.+. ...++. ...++.++..++ ..++. ++..++..++++++++.|+++| +++.
T Consensus 298 ---~~~---------------~~~~~~---~~~~~~al~~~l-~~~~~----~~~~~~~~~~~~~l~~~L~~~~-~~~~- 349 (467)
T 2oqx_A 298 ---EGF---------------PTYGGL---EGGAMERLAVGL-YDGMN----LDWLAYRIAQVQYLVDGLEEIG-VVCQ- 349 (467)
T ss_dssp ---TSS---------------CCCCCC---CHHHHHHHHHHH-HHTTC----HHHHHHHHHHHHHHHHHHHHTT-CCEE-
T ss_pred ---CCc---------------ccccch---hhhHHHHHHHhh-Hhhhh----HHHHHHHHHHHHHHHHHHHHCC-Ceee-
Confidence 000 001111 111221221111 11111 1233444677889999998875 6655
Q ss_pred CCCcceEEEec----CC-------HHHHHHHH-HHcCceeeeec-----------------CCeEEEEeccC-CCHHHHH
Q 001990 472 LPFFDTVKVKC----AD-------AHAIASAA-YKIEMNLRVVD-----------------SNTVTASFDET-TTLEDVD 521 (985)
Q Consensus 472 ~~~~~~~~i~~----~~-------~~~l~~~L-~~~Gi~~~~~~-----------------~~~lris~~~~-~t~edid 521 (985)
+.....+.+.+ ++ +.++.++| .++||.+.... .+.+|++++.. +|++||+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~ 429 (467)
T 2oqx_A 350 QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMD 429 (467)
T ss_dssp EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHH
T ss_pred cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHHH
Confidence 21112233333 11 34468888 78899875421 27899999998 9999999
Q ss_pred HHHHHHhC
Q 001990 522 KLFIVFAG 529 (985)
Q Consensus 522 ~ll~~l~~ 529 (985)
++++.|..
T Consensus 430 ~~~~~l~~ 437 (467)
T 2oqx_A 430 FIIEAFKH 437 (467)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999974
No 459
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.12 E-value=2.2e-09 Score=124.43 Aligned_cols=267 Identities=12% Similarity=0.040 Sum_probs=164.8
Q ss_pred HHHHHHHHhhC------CCCcceeeccchHHHHHHHHHHhh-------hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCe
Q 001990 215 NFQTMIADLTG------LPMSNASLLDEGTAAAEAMAMCNN-------IQKGKKKTFIIASNCHPQTIDICITRADGFDI 281 (985)
Q Consensus 215 e~q~~ia~L~g------~~~~~~sl~~~~ta~~ea~~~a~~-------~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi 281 (985)
++++.+|++++ .++.++.++.|++.++..++.++. .. +||+|+++.-.|+.+...++.. |.
T Consensus 104 ~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~--~Gd~Vlv~~P~y~~~~~~~~~~----g~ 177 (427)
T 2hox_A 104 ELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDA--PESKVVAHAPFYPVFREQTKYF----DK 177 (427)
T ss_dssp HHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTS--CCEEEEECSSCCHHHHHHHHHS----CB
T ss_pred HHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCC--CCCEEEEeCCCcccHHHHHHHc----CC
Confidence 45667777765 566789899999998888777662 23 7899999999999998887642 33
Q ss_pred EEE--EeCchhhhc-cCCCEeEEEEEcC-CCCeeeccHHHHHHHHHhCCcEEEEEeccccccCCCCCC--cccceEEEec
Q 001990 282 KVV--VSDLKDIDY-KSGDVCGVLVQYP-GTEGEVLDYGDFIKNAHANGVKVVMATDLLALTILKPPG--ELGADIVVGS 355 (985)
Q Consensus 282 ~v~--~~~~~~l~~-l~~~t~~V~v~~p-n~~G~i~dl~~I~~~a~~~galliV~a~~~alg~l~~p~--~~GaDi~v~s 355 (985)
+++ .+++++|++ +++++++|++++| |++|.+.+ + + ++ +...+++ +... ....+.. ..+.||+++|
T Consensus 178 ~~~~~~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~-~-~---l~--~~~~i~d-~~~~-~~~~s~~~~~~~~~i~~~S 248 (427)
T 2hox_A 178 KGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-A-V---IK--GCKSIYD-MVYY-WPHYTPIKYKADEDILLFT 248 (427)
T ss_dssp TTEEEEEEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-C-S---ST--TCEEEEE-CTTC-STTTSCCCSCBCCSEEEEE
T ss_pred eeeeecCCHHHHHHhhcCCceEEEEcCCCCCcccccH-H-H---Hc--CCCEEEe-eccc-CCCCCccccCCCceEEEEe
Confidence 332 246678877 7778899999998 68999988 3 2 23 4555553 2211 1001111 2578999999
Q ss_pred C-ccccccCCCCCCceEEEEEc-hhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHH
Q 001990 356 A-QRFGVPMGYGGPHAAFLATS-QEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM 433 (985)
Q Consensus 356 ~-k~lg~P~~~GGP~~G~l~~~-~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~ 433 (985)
. |.++.| |--+|+++++ +++++++... +...+.+..+ ....+..+++
T Consensus 249 ~SK~~g~~----G~RiG~~~~~~~~l~~~l~~~--------------------------~~~~~~~~~~-~~q~a~~~~L 297 (427)
T 2hox_A 249 MSKFTGHS----GSRFGWALIKDESVYNNLLNY--------------------------MTKNTEGTPR-ETQLRSLKVL 297 (427)
T ss_dssp HHHHTSCG----GGCCEEEEECCHHHHHHHHHH--------------------------HHHHTSSCCH-HHHHHHHHHH
T ss_pred ChhcCCCC----CceEEEEEECCHHHHHHHHHH--------------------------HHhcCCCCCH-HHHHHHHHHh
Confidence 8 877533 1236999994 7776654100 0001111111 1111222222
Q ss_pred H--HHHc------CcchHHHHHHHHHHHHHHHHHHHhcCCCEEE--cC-C----------CCcce-EEEecCC-HHHHHH
Q 001990 434 Y--AVYH------GPEGLKTIAQRVHGLAGTFALGLKKLGTVEV--QG-L----------PFFDT-VKVKCAD-AHAIAS 490 (985)
Q Consensus 434 y--~~~~------g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~--~~-~----------~~~~~-~~i~~~~-~~~l~~ 490 (985)
- ..++ ..+=+++..++..++.+++.+.|+++.|+++ +. + +...- +.++++. ..++.+
T Consensus 298 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~ 377 (427)
T 2hox_A 298 KEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCY 377 (427)
T ss_dssp HHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHH
T ss_pred hcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCCcHHHHHH
Confidence 0 1111 1223456677788889999999998833876 21 1 10011 2345553 455666
Q ss_pred HHH-HcCceeeee-----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 491 AAY-KIEMNLRVV-----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 491 ~L~-~~Gi~~~~~-----~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.|. ++||.+... .++.+|+|+.. +++++++.++.|..
T Consensus 378 ~ll~~~gI~v~pg~~f~~~~~~~Ris~~~--~~e~l~~~l~~l~~ 420 (427)
T 2hox_A 378 QTFQNGRINTQNGVGFEASSRYVRLSLIK--TQDDFDQLMYYLKD 420 (427)
T ss_dssp HHHHHTTEECEEGGGGTSCTTEEEEECSS--CHHHHHHHHHHHHH
T ss_pred HHHHHCCEEEcCCCccCCCCCEEEEEecC--CHHHHHHHHHHHHH
Confidence 664 789988542 25789999984 88999999888863
No 460
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.09 E-value=1.8e-09 Score=125.06 Aligned_cols=274 Identities=15% Similarity=0.184 Sum_probs=155.9
Q ss_pred HHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhh-hhcCCCCEEEEcCCC-ChhHHHHHHHhh---------cCCCe-
Q 001990 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQKGKKKTFIIASNC-HPQTIDICITRA---------DGFDI- 281 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~~~~g~~Vlv~~~~-h~s~~~~~~~~a---------~~~gi- 281 (985)
.++.+.++++++ +...+.+++|||.++++++.+.+ .. ++++||+.+.. |......+.... ...++
T Consensus 98 ~~l~~~la~~~~-~~~~v~~~~sGsea~~~ai~~a~~~~--~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~ 174 (434)
T 3l44_A 98 VKFAKMLKEAMP-ALDKVRFVNSGTEAVMTTIRVARAYT--GRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVP 174 (434)
T ss_dssp HHHHHHHHHHCT-TCSEEEEESSHHHHHHHHHHHHHHHH--CCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCC
T ss_pred HHHHHHHHHhCC-CCCEEEEeCchHHHHHHHHHHHHHhh--CCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCC
Confidence 346678888886 45678888999988888765433 23 67888887754 443332211000 00111
Q ss_pred -----EEEEe---Cchhhhc-cC---CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEeccccccC-CCC
Q 001990 282 -----KVVVS---DLKDIDY-KS---GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLALTI-LKP 343 (985)
Q Consensus 282 -----~v~~~---~~~~l~~-l~---~~t~~V~v~~p-n~~G~i~d----l~~I~~~a~~~galliV~a~~~alg~-l~~ 343 (985)
.+..+ |+++|++ +. +++++|++..+ +..|.+.+ +++|.++|+++|+++++| +... |+ ...
T Consensus 175 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~D-Ev~~-g~~~g~ 252 (434)
T 3l44_A 175 QSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYD-EVIT-AFRFMY 252 (434)
T ss_dssp HHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEE-CTTT-TTTSSS
T ss_pred CcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEe-cccc-ceeccc
Confidence 23333 3456665 43 56777777654 46788887 999999999999999995 2222 21 101
Q ss_pred C---Cccc--ceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCC
Q 001990 344 P---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATS 418 (985)
Q Consensus 344 p---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~ats 418 (985)
. ..+| .|+++. +|.|+ ||-.+|++.+++++++.+.. ..+ + ...+|.
T Consensus 253 ~~~~~~~~~~~di~t~-sK~~~-----~G~~iG~~~~~~~i~~~~~~----------~~~-~------------~~~~t~ 303 (434)
T 3l44_A 253 GGAQDLLGVTPDLTAL-GKVIG-----GGLPIGAYGGKKEIMEQVAP----------LGP-A------------YQAGTM 303 (434)
T ss_dssp SCHHHHHTCCCSEEEE-EGGGG-----TTSSCEEEEECHHHHTTBTT----------TSS-B------------CCCCTT
T ss_pred cHHHHHcCCCCCeeeh-hhhhc-----CCcCeeeEEEcHHHHHhhcc----------CCC-c------------ccCCCC
Confidence 1 1123 465433 48886 23456788889988876521 000 0 011222
Q ss_pred CccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcC----CCEEEc-CCCCcceEEEec-----------
Q 001990 419 NICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVEVQ-GLPFFDTVKVKC----------- 482 (985)
Q Consensus 419 ni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~~~-~~~~~~~~~i~~----------- 482 (985)
+. ++.+..+..+++ ..+.. +++.++..++.+++++.|+++ +.+... +...+-.+.+..
T Consensus 304 ~~-~~~a~aaa~aal--~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (434)
T 3l44_A 304 AG-NPASMASGIACL--EVLQQ---EGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQD 377 (434)
T ss_dssp TT-CHHHHHHHHHHH--HHHTS---TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHH
T ss_pred Cc-CHHHHHHHHHHH--HHHHc---ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccc
Confidence 22 111222222222 33333 345566666777777777653 311111 111111222211
Q ss_pred CC---HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 483 AD---AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 ~~---~~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
+. ..++.+.|.++||.++....+.+|++ ..+|++|+++++++|..
T Consensus 378 ~~~~~~~~~~~~l~~~Gv~v~~~~~~~~rl~--~~~t~e~i~~~l~~l~~ 425 (434)
T 3l44_A 378 TDGEMFGKFFKLMLQEGVNLAPSKYEAWFLT--TEHTKEDIEYTIEAVGR 425 (434)
T ss_dssp SCHHHHHHHHHHHHHTTEECCSSTTCCEECC--TTCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCeEEeecCCCcEEEe--cccCHHHHHHHHHHHHH
Confidence 12 36788999999999876555677774 57899999999999974
No 461
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.08 E-value=1.2e-09 Score=126.15 Aligned_cols=271 Identities=14% Similarity=0.135 Sum_probs=155.1
Q ss_pred HHHHHHHHHHhhCCCCcceeeccchHHHHHHHHHH-hhhhcCCCCEEEEcCCC-ChhHHHHHHHh-h--------cCCCe
Q 001990 213 LLNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMC-NNIQKGKKKTFIIASNC-HPQTIDICITR-A--------DGFDI 281 (985)
Q Consensus 213 i~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a-~~~~~~~g~~Vlv~~~~-h~s~~~~~~~~-a--------~~~gi 281 (985)
..++.+.++++++ +..++.+++||+.++++++.+ ..+. ++++||+.+.. |......+... . ...|+
T Consensus 94 ~~~l~~~l~~~~~-~~~~v~~~~~g~ea~~~al~~ar~~~--~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~ 170 (424)
T 2e7u_A 94 EVALAKKVKRAYP-FVDLVRFVNSGTEATMSALRLARGYT--GRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGV 170 (424)
T ss_dssp HHHHHHHHHHHCT-TCCEEEEESSHHHHHHHHHHHHHHHH--CCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTC
T ss_pred HHHHHHHHHHhCC-CCCEEEEeCCHHHHHHHHHHHHHHhh--CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCC
Confidence 3456678888885 455688889999888877653 2234 55777777754 44222221000 0 01232
Q ss_pred ------EEEEe---Cchhhhc-cC---CCEeEEEEEcCC-CCeeecc----HHHHHHHHHhCCcEEEEEeccccccCC-C
Q 001990 282 ------KVVVS---DLKDIDY-KS---GDVCGVLVQYPG-TEGEVLD----YGDFIKNAHANGVKVVMATDLLALTIL-K 342 (985)
Q Consensus 282 ------~v~~~---~~~~l~~-l~---~~t~~V~v~~pn-~~G~i~d----l~~I~~~a~~~galliV~a~~~alg~l-~ 342 (985)
.+..+ |+++|++ +. +++++|++...+ .+|.+.+ +++|.++ +++|+++++| +.++ |+. .
T Consensus 171 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~D-Ev~~-g~~~g 247 (424)
T 2e7u_A 171 PEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIAD-EVMT-GFRLA 247 (424)
T ss_dssp CHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEE-CTTT-TTTSS
T ss_pred CCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEe-cCcc-ccccc
Confidence 23333 4566665 54 467777765333 4898887 9999999 9999999995 3333 321 1
Q ss_pred CC---Cccc--ceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccC
Q 001990 343 PP---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKAT 417 (985)
Q Consensus 343 ~p---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~at 417 (985)
.. ..+| .|++.. +|.|++ |-.+|++++++++++.+... +.. ...+|
T Consensus 248 ~~~~~~~~~~~~di~s~-sK~l~~-----G~~~G~~~~~~~~~~~~~~~---------~~~--------------~~~~t 298 (424)
T 2e7u_A 248 FGGATELLGLKPDLVTL-GKILGG-----GLPAAAYAGRREIMEKVAPL---------GPV--------------YQAGT 298 (424)
T ss_dssp TTHHHHHHTCCCSEEEE-CGGGGT-----TSSCEEEEECHHHHTTBTTT---------SSB--------------CCCCT
T ss_pred hhHHHHHhCCCcchhhh-hhhhhC-----CcceEEEEEcHHHHhhhccc---------CCc--------------ccCCC
Confidence 11 1123 577532 498862 22368888999888765210 000 00112
Q ss_pred CCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcC----CCEE--EcCCCCcceEEEecC--------
Q 001990 418 SNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTVE--VQGLPFFDTVKVKCA-------- 483 (985)
Q Consensus 418 sni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~~--~~~~~~~~~~~i~~~-------- 483 (985)
.+. ++.+..+..+++ ..+.. .+++.++..++.+++++.|+++ + +. +.+... -+.+.++
T Consensus 299 ~~~-~~~~~aaa~aal--~~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~--~~~i~~~~~~~~~~~ 370 (424)
T 2e7u_A 299 LSG-NPLAMAAGLATL--ELLEE--NPGYYAYLEDLGARLEAGLKEVLKEKG-LPHTVNRVGS--MITVFFTEGPVVTFQ 370 (424)
T ss_dssp TCS-CHHHHHHHHHHH--HHHHH--CTHHHHHHHHHHHHHHHHHHHHHHHTT-CCCEEEEETT--EEEEESSSSCCCSHH
T ss_pred CCC-CHHHHHHHHHHH--HHHHh--ccHHHHHHHHHHHHHHHHHHHHHHhCC-CceEEEeece--EEEEEEeCCCCcchh
Confidence 111 111222222332 22211 1456777888888888888764 4 31 111111 1333332
Q ss_pred -----C---HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001990 484 -----D---AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 484 -----~---~~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~ 528 (985)
. ..++.+.|.++||.+.......+ .+...+|++|+++++++|.
T Consensus 371 ~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~--~~~~~~t~~~i~~~l~~l~ 421 (424)
T 2e7u_A 371 DARRTDTELFKRFFHGLLDRGIYWPPSNFEAA--FLSVAHREEDVEKTLEALR 421 (424)
T ss_dssp HHTTSCHHHHHHHHHHHHTTTEECCSSSSSCE--ECCTTCCHHHHHHHHHHHH
T ss_pred hhcccCHHHHHHHHHHHHHCCeEEeccCCCce--EeeccCCHHHHHHHHHHHH
Confidence 1 45788999999998875433344 4557899999999999986
No 462
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.03 E-value=7.1e-09 Score=120.02 Aligned_cols=268 Identities=14% Similarity=0.137 Sum_probs=156.7
Q ss_pred HHHHHHHHHhhCCCCcceeeccchHHHHHHHHHHhh-hhcCCCCEEEEcC-CCChhHHHHHHHh---------hcCCCe-
Q 001990 214 LNFQTMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQKGKKKTFIIAS-NCHPQTIDICITR---------ADGFDI- 281 (985)
Q Consensus 214 ~e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~~~~g~~Vlv~~-~~h~s~~~~~~~~---------a~~~gi- 281 (985)
.++.+.++++++ +...+.+++|||.++++++.+.+ .. ++++||+.+ .-|..+...+... ....++
T Consensus 96 ~~l~~~la~~~~-~~~~v~~~~~Gsea~~~ai~~a~~~~--~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~ 172 (429)
T 3k28_A 96 NKLAKLVIERVP-SIEIVRMVNSGTEATMSALRLARGYT--GRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVP 172 (429)
T ss_dssp HHHHHHHHHHST-TCSEEEEESSHHHHHHHHHHHHHHHH--TCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCC
T ss_pred HHHHHHHHHhCC-CCCEEEEeCChHHHHHHHHHHHHHhh--CCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCC
Confidence 346678888886 45568888999988888765433 23 567777655 5554443322100 000111
Q ss_pred -----EEEEe---Cchhhhc-cC---CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEeccccccCCCCC
Q 001990 282 -----KVVVS---DLKDIDY-KS---GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATDLLALTILKPP 344 (985)
Q Consensus 282 -----~v~~~---~~~~l~~-l~---~~t~~V~v~~p-n~~G~i~d----l~~I~~~a~~~galliV~a~~~alg~l~~p 344 (985)
.+..+ |++++++ +. +++++|++..+ +..|.+.+ +++|.++|+++|+++++| +.. .|+ ..
T Consensus 173 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D-Ev~-~g~--~~ 248 (429)
T 3k28_A 173 EGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFD-EVM-TGF--RV 248 (429)
T ss_dssp HHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEE-CTT-TTT--TS
T ss_pred CcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEe-ccc-ccc--cc
Confidence 22223 4456665 43 56777777654 46788888 999999999999999995 332 222 11
Q ss_pred Cc------c--cceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEeccccccccccccc
Q 001990 345 GE------L--GADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKA 416 (985)
Q Consensus 345 ~~------~--GaDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~a 416 (985)
+. + ..|+++. +|.|++ |-.+|++.+++++++.+... .+ + ...+
T Consensus 249 g~~~~~~~~~~~~di~t~-sK~~~~-----G~~iG~~~~~~~~~~~~~~~----------~~-~------------~~~~ 299 (429)
T 3k28_A 249 AYNCGQGYYGVTPDLTCL-GKVIGG-----GLPVGAYGGKAEIMRQVAPS----------GP-I------------YQAG 299 (429)
T ss_dssp STTHHHHHHTCCCSEEEE-CGGGGT-----TSCCEEEEECHHHHTTBTTT----------SS-B------------CCCC
T ss_pred CcchHHHHhCCCCceehh-hhhhcC-----CCCeEEEEEcHHHHhhhccC----------CC-c------------cccC
Confidence 21 2 2566543 488852 34568899999888765210 00 0 0111
Q ss_pred CCCccchhHHHHHHHHHH-HHHcCcchHHHHHHHHHHHHHHHHHHHhcC----CCE-EEcCCCCcceEEEec--------
Q 001990 417 TSNICTAQALLANMAAMY-AVYHGPEGLKTIAQRVHGLAGTFALGLKKL----GTV-EVQGLPFFDTVKVKC-------- 482 (985)
Q Consensus 417 tsni~t~~~l~a~~aa~y-~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g~~-~~~~~~~~~~~~i~~-------- 482 (985)
|.+. .++ +..+++. +..+ + +++.++..++.+++++.|+++ +.+ .+..... -+.+.+
T Consensus 300 t~~~---~~~-a~aaa~aal~~~--~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~ 369 (429)
T 3k28_A 300 TLSG---NPL-AMAAGYETLVQL--T--PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGS--MIGIFFTDEPVINY 369 (429)
T ss_dssp TTTT---CHH-HHHHHHHHHHTC--C--HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETT--EEEEESSSSCCCSH
T ss_pred CCCC---ChH-HHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeecc--EEEEEEecCCcccc
Confidence 2211 111 2222221 1222 2 667788888888888888764 211 1111011 122221
Q ss_pred -----CC---HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 483 -----AD---AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 483 -----~~---~~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
++ ..++.+.|.++||.++....+.+|++ ..+|++|+++++++|..
T Consensus 370 ~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~r~~--~~~t~e~i~~~l~~l~~ 422 (429)
T 3k28_A 370 DAAKSSNLQFFAAYYREMVEQGVFLPPSQFEGLFLS--TVHSDADIEATIAAAEI 422 (429)
T ss_dssp HHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCBCCC--TTCCHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHCCeEEecCCCCCEEEE--CCCCHHHHHHHHHHHHH
Confidence 12 47888999999999876445667774 57899999999999974
No 463
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=98.99 E-value=6.1e-09 Score=117.57 Aligned_cols=285 Identities=12% Similarity=0.076 Sum_probs=167.1
Q ss_pred HHHHHHHhhCCCCc----ceeeccchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHH--------HHHH---h--hcC
Q 001990 216 FQTMIADLTGLPMS----NASLLDEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTID--------ICIT---R--ADG 278 (985)
Q Consensus 216 ~q~~ia~L~g~~~~----~~sl~~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~--------~~~~---~--a~~ 278 (985)
+++...+|+|++.+ |+-.+ +|+.|..|+.+|+. . +||+|+.-+..|..-+. .+.. + ...
T Consensus 105 a~~rak~lF~a~~A~w~VNVQP~-SGs~AN~avy~All-~--PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~ 180 (490)
T 3ou5_A 105 CQRRALEAFDLDPAQWGVNVQPY-SGSPANLAVYTALL-Q--PHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMP 180 (490)
T ss_dssp HHHHHHHHTTCCTTTEEEECCCS-SHHHHHHHHHHHHC-C---CCCEECBC----------------------------C
T ss_pred HHHHHHHHhCCCccccCCCCCcC-CHHHHHHHHHHHHc-C--CCCEEEecccCCCCcccccccCCCcccccccccccccc
Confidence 45678999999987 55544 45556667777763 3 89999977766533221 1100 0 001
Q ss_pred CCeEE--EEeCchhhhc--cCCCEeEEEEEcCCCCeeeccHHHHHHHHHhCCcEEEEE-eccc---cccCCCCCCcccce
Q 001990 279 FDIKV--VVSDLKDIDY--KSGDVCGVLVQYPGTEGEVLDYGDFIKNAHANGVKVVMA-TDLL---ALTILKPPGELGAD 350 (985)
Q Consensus 279 ~gi~v--~~~~~~~l~~--l~~~t~~V~v~~pn~~G~i~dl~~I~~~a~~~galliV~-a~~~---alg~l~~p~~~GaD 350 (985)
+++.- -.+|++++++ ...+.++|++-.+.|. ...|++++.++|++.|++++++ +|.. +-|+.++|-.+ ||
T Consensus 181 Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G~SaY~-r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~-AD 258 (490)
T 3ou5_A 181 YKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA-RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKH-AD 258 (490)
T ss_dssp BCEETTTTEECHHHHHHHHHHHCCSEEEECCSSCC-SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGT-CS
T ss_pred cccCCCCCcccHHHHHHHHhhcCCCeEEECCccCc-cccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCcccc-ce
Confidence 11111 1245566665 2335677776654443 4568999999999999999995 4543 34677788777 99
Q ss_pred EEEecC-ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccc--cccCCCccchhHHH
Q 001990 351 IVVGSA-QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRR--DKATSNICTAQALL 427 (985)
Q Consensus 351 i~v~s~-k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rr--e~atsni~t~~~l~ 427 (985)
|+.++. |+|.+ |..|++.++++....-+. .++. ...++ ++.+.+ ..|..--+-...+.
T Consensus 259 vVTtTTHKTLrG------PrGG~Il~~~~~~~~~~k---------~~~~-~~~~~---~kkin~aVFPg~qggp~~h~IA 319 (490)
T 3ou5_A 259 IVTTTTHKTLRG------ARSGLIFYRKGVKAVDPK---------TGRE-IPYTF---EDRINFAVFPSLQGGPHNHAIA 319 (490)
T ss_dssp EEEEESSSTTCS------CSCEEEEEECSEEEECC-----------CCE-EECCC---HHHHHHHHTTTTCSSCCHHHHH
T ss_pred EEeccccccccC------CCceEEEecccccccccc---------ccch-hHHHH---HHHHHhhcCccccccchHHHHH
Confidence 999999 88864 556889888753211100 0110 00001 011111 01211111113333
Q ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcC-CCCcceEEEecC--C--HHHHHHHHHHcCceeee-
Q 001990 428 ANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG-LPFFDTVKVKCA--D--AHAIASAAYKIEMNLRV- 501 (985)
Q Consensus 428 a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~~~~~~~~i~~~--~--~~~l~~~L~~~Gi~~~~- 501 (985)
|.+.++ ...+-+ ..++-+++..+||+.|++.|.+.| ++++. ....+.+.++.. + ..+..+.|.+.||.+..
T Consensus 320 AkAVaf-~Ea~~p-~fk~Ya~qVv~NAkaLA~~L~~~G-~~vvsGgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN 396 (490)
T 3ou5_A 320 AVAVAL-KQACTP-MFREYSLQVLKNARAMADALLERG-YSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKN 396 (490)
T ss_dssp HHHHHH-HHHHSH-HHHHHHHHHHHHHHHHHHHHHHTT-CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEE
T ss_pred HHHHHH-HHHHhH-hHHHHHHHHHHHHHHHHHHHHhCC-CeeecCCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCC
Confidence 333332 222333 457888999999999999999998 99984 344455666653 2 67788888889997642
Q ss_pred --------ecCCeEEEEeccCC----CHHHHHHHHHHHh
Q 001990 502 --------VDSNTVTASFDETT----TLEDVDKLFIVFA 528 (985)
Q Consensus 502 --------~~~~~lris~~~~~----t~edid~ll~~l~ 528 (985)
..++.||+...+.+ .++|++++.+.+.
T Consensus 397 ~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~ 435 (490)
T 3ou5_A 397 TCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFID 435 (490)
T ss_dssp CCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHH
Confidence 22578999987754 4678877777665
No 464
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=98.98 E-value=1.5e-08 Score=117.49 Aligned_cols=300 Identities=14% Similarity=0.189 Sum_probs=164.0
Q ss_pred CCCCCCCCcHHHHHHHH---hCCccccccCCChhhHhhHHHHHHHHHHHHHHHhhC-CCCcceeeccchHHHHHHHH-HH
Q 001990 173 MGYYNTHVPPVILRNIM---ENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLTG-LPMSNASLLDEGTAAAEAMA-MC 247 (985)
Q Consensus 173 ~g~~~~~~p~~v~~~i~---~~~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~g-~~~~~~sl~~~~ta~~ea~~-~a 247 (985)
...++|-.|.++. ++. .+.-.++.++++.. ++.+.+++++. ++ .+.+.++||.+.|+++ +|
T Consensus 98 ~~~lGH~hp~v~~-Av~~q~~~~~~~~~~~~~~~-----------~lae~l~~~~p~~~--~v~f~~SGsEA~e~AiklA 163 (454)
T 4ao9_A 98 AGVYGHSAPEIRD-AVIEAMQGGINLTGHNLLEG-----------RLARLICERFPQIE--QLRFTNSGTEANLMALTAA 163 (454)
T ss_dssp TTTTCSCCHHHHH-HHHHHHHTCSCCCSEESSHH-----------HHHHHHHHHSTTCS--EEEEESSHHHHHHHHHHHH
T ss_pred hhcccCCCHHHHH-HHHHHHhcCCCccCCcHHHH-----------HHHHHHHHhCCCCC--EEEEeCchHHHHHHHHHHH
Confidence 4455676777663 333 33322232333322 34567788774 43 3667789998888876 45
Q ss_pred hhhhcCCCCEEEEcC-CCChhHHHHHH-HhhcCCCeEEEEeCch---hhhc-c---CCCEeEEEEEc-CCCCeeecc---
Q 001990 248 NNIQKGKKKTFIIAS-NCHPQTIDICI-TRADGFDIKVVVSDLK---DIDY-K---SGDVCGVLVQY-PGTEGEVLD--- 314 (985)
Q Consensus 248 ~~~~~~~g~~Vlv~~-~~h~s~~~~~~-~~a~~~gi~v~~~~~~---~l~~-l---~~~t~~V~v~~-pn~~G~i~d--- 314 (985)
..++ ++++||.-+ +-|..+..... .-..........++.+ ++++ + .+++++|++.- .+..|.+.+
T Consensus 164 r~~t--gr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~ 241 (454)
T 4ao9_A 164 LHFT--GRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPD 241 (454)
T ss_dssp HHHH--TCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHH
T ss_pred Hhcc--cCCeEEEEeCCcCCccccccccccCccCCCCcccCCCchHHHHHHHHhhcCCceEEEEeccccCCCCccCCchh
Confidence 5455 667888655 45543322110 0001122344445543 3443 3 46788888753 256788876
Q ss_pred -HHHHHHHHHhCCcEEEEEeccccccCCCCCC---ccc--ceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCcee
Q 001990 315 -YGDFIKNAHANGVKVVMATDLLALTILKPPG---ELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIV 388 (985)
Q Consensus 315 -l~~I~~~a~~~galliV~a~~~alg~l~~p~---~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~v 388 (985)
+++|.++|+++|+++|+| +.+. |-...-+ .+| .|+++ -+|.+++ |.| .|.+.+++++++.+.+..
T Consensus 242 fL~~lr~lc~~~g~lLI~D-EV~t-GR~G~~~a~e~~gv~PDi~t-~gK~lgg----G~P-iga~~~~~ei~~~~~~~~- 312 (454)
T 4ao9_A 242 FLQALRESATQVGALLVFD-EVMT-SRLAPHGLANKLGIRSDLTT-LGKYIGG----GMS-FGAFGGRADVMALFDPRT- 312 (454)
T ss_dssp HHHHHHHHHHHHTCEEEEE-CTTG-GGGSTTCHHHHHTCCCSEEE-EEGGGGT----TSS-CEEEEECHHHHGGGCTTT-
T ss_pred hHHHHHHHHhhcCCEEEEE-CCCc-CCCccccchhccCCCCcEEE-eccccCC----CCc-ceeeeeHHHHHHHHhhcc-
Confidence 999999999999999995 3333 4221111 233 38854 3477753 445 456778888887763210
Q ss_pred eeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHH-HHHHcCcchHHHHHHHHHHHHHHHHHHHhcC---
Q 001990 389 GVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAM-YAVYHGPEGLKTIAQRVHGLAGTFALGLKKL--- 464 (985)
Q Consensus 389 G~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~-y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~--- 464 (985)
+. + ...+|.+ . .++ +++|++ -+..+-. +++.++..++.++|+++|+++
T Consensus 313 -------~~--~------------~h~~T~~--g-nPl-a~AAala~L~~l~~---~~~~~~~~~~g~~l~~~L~~l~~~ 364 (454)
T 4ao9_A 313 -------GP--L------------AHSGTFN--N-NVM-TMAAGYAGLTKLFT---PEAAGALAERGEALRARLNALCAN 364 (454)
T ss_dssp -------CS--C------------CCCCTTT--T-CHH-HHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CC--c------------cccCCCC--C-CHH-HHHHHHHHHHHHhc---cChhHHHHHHHHHHHHHHHHHHhh
Confidence 10 0 0112211 1 122 222222 1345544 356677778888888888763
Q ss_pred -CC-EEEcCCCCcceEEEe-----------cCC---HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHh
Q 001990 465 -GT-VEVQGLPFFDTVKVK-----------CAD---AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 465 -g~-~~~~~~~~~~~~~i~-----------~~~---~~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~ 528 (985)
+- .++.+...+-.+-|. ..+ ...+...|.++||++.+ .+.+ .+...+|++|||+++++|.
T Consensus 365 ~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p--~~~~--~~s~~~T~~dId~~l~al~ 440 (454)
T 4ao9_A 365 EGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSP--RGFV--VLSLPLTDADIDRYVAAIG 440 (454)
T ss_dssp HTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCT--TCEE--ECCTTCCHHHHHHHHHHHH
T ss_pred CCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcC--CCCE--EEeCCCCHHHHHHHHHHHH
Confidence 20 011110000001110 001 35677788899998864 2333 3455689999999999997
Q ss_pred C
Q 001990 529 G 529 (985)
Q Consensus 529 ~ 529 (985)
.
T Consensus 441 ~ 441 (454)
T 4ao9_A 441 S 441 (454)
T ss_dssp H
T ss_pred H
Confidence 5
No 465
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=98.98 E-value=1.3e-08 Score=119.49 Aligned_cols=267 Identities=13% Similarity=0.118 Sum_probs=154.1
Q ss_pred HHHHHhhCCCCcceeeccchHHHHHHHHHHhh-hh----cC-----------------C---CCEEEEcC-CCChhHHHH
Q 001990 218 TMIADLTGLPMSNASLLDEGTAAAEAMAMCNN-IQ----KG-----------------K---KKTFIIAS-NCHPQTIDI 271 (985)
Q Consensus 218 ~~ia~L~g~~~~~~sl~~~~ta~~ea~~~a~~-~~----~~-----------------~---g~~Vlv~~-~~h~s~~~~ 271 (985)
+.++++++.....+.++++|+.+.++++.+.+ +. ++ + +++||+.+ .-|..+...
T Consensus 117 ~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~ 196 (472)
T 1ohv_A 117 ESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGC 196 (472)
T ss_dssp HTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHH
T ss_pred HHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHH
Confidence 34555664444568888999999998874332 21 10 1 37888777 566655555
Q ss_pred HHHhhc----CCCeE-----EEEe--------------------Cchhhhc-cCC------CEeEEEEEc-CCCCeeecc
Q 001990 272 CITRAD----GFDIK-----VVVS--------------------DLKDIDY-KSG------DVCGVLVQY-PGTEGEVLD 314 (985)
Q Consensus 272 ~~~~a~----~~gi~-----v~~~--------------------~~~~l~~-l~~------~t~~V~v~~-pn~~G~i~d 314 (985)
+..-.. ..+.. ...+ ++++|++ +++ ++++|++.. +|.+|.+.+
T Consensus 197 ~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~ 276 (472)
T 1ohv_A 197 LATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHA 276 (472)
T ss_dssp HHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCC
T ss_pred HhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCC
Confidence 422100 01111 1111 2344555 543 799888865 467998887
Q ss_pred ----HHHHHHHHHhCCcEEEEEecccc-ccCCC---CCCccc----ceEEEecCccccccCCCCCCceEEEEEchhhHhc
Q 001990 315 ----YGDFIKNAHANGVKVVMATDLLA-LTILK---PPGELG----ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRM 382 (985)
Q Consensus 315 ----l~~I~~~a~~~galliV~a~~~a-lg~l~---~p~~~G----aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~ 382 (985)
+++|.++|+++|+++++| +..+ +|... ....+| .|+++.+ |.+ +|| |++. ++++. .
T Consensus 277 ~~~~l~~l~~l~~~~g~lli~D-Ev~~g~g~~g~~~~~~~~gv~~~~Di~t~s-K~~-----l~G---G~~~-~~~~~-~ 344 (472)
T 1ohv_A 277 SDDFFRKLRDISRKHGCAFLVD-EVQTGGGSTGKFWAHEHWGLDDPADVMTFS-KKM-----MTG---GFFH-KEEFR-P 344 (472)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEE-CTTTTTTTTSSSSGGGGGCCSSCCSEEEEC-GGG-----SSE---EEEE-CGGGS-C
T ss_pred CHHHHHHHHHHHHHhCCEEEEe-CcccCCCCCCCchhccccCCCCCCCEEEEc-ccc-----ccC---CccC-chhhc-c
Confidence 999999999999999995 2333 43221 112346 6876443 773 122 5654 54431 1
Q ss_pred CCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHh
Q 001990 383 MPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLK 462 (985)
Q Consensus 383 lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~ 462 (985)
+. + + ...+|.+. .+....+..+++ ..+..+ ++.++..++.++|+++|+
T Consensus 345 ~~-------------~-~------------~~~~T~~~-~~~~~aaa~aal--~~~~~~---~~~~~~~~~~~~l~~~L~ 392 (472)
T 1ohv_A 345 NA-------------P-Y------------RIFNTWLG-DPSKNLLLAEVI--NIIKRE---DLLSNAAHAGKVLLTGLL 392 (472)
T ss_dssp SS-------------S-S------------SSCCSSSS-CHHHHHHHHHHH--HHHHHT---THHHHHHHHHHHHHHHHH
T ss_pred cc-------------c-c------------cccCccCc-cHHHHHHHHHHH--HHHHhC---CHHHHHHHHHHHHHHHHH
Confidence 10 0 0 01122111 112222333333 332222 356777788888888887
Q ss_pred cC--C--C-EEEcCCCCcceEEEecCC---HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 463 KL--G--T-VEVQGLPFFDTVKVKCAD---AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 463 ~~--g--~-~~~~~~~~~~~~~i~~~~---~~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
++ + + +.... +...-+.+..++ +.++.++|.++||.+.....+.||++++..+|++||++++++|..
T Consensus 393 ~l~~~~~~~v~~~~-~~g~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~ 466 (472)
T 1ohv_A 393 DLQARYPQFISRVR-GRGTFCSFDTPDESIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSD 466 (472)
T ss_dssp HHHHHCTTTCEEEE-EETTEEEEECSSHHHHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred HHHhhCCCcEEeec-CCceEEEEEeCChhHHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 64 1 0 11111 111123445443 678999999999988765467999999999999999999999974
No 466
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=98.92 E-value=1.1e-07 Score=113.34 Aligned_cols=287 Identities=13% Similarity=0.060 Sum_probs=159.8
Q ss_pred CcceeeccchHHHHHHHHHHhh---hhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----------hhhhc-
Q 001990 228 MSNASLLDEGTAAAEAMAMCNN---IQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----------KDIDY- 293 (985)
Q Consensus 228 ~~~~sl~~~~ta~~ea~~~a~~---~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~----------~~l~~- 293 (985)
+.++.+++|++.++..++.++. +. ++||+|++++-.|+.+..... ..+.|++++.++. ++|++
T Consensus 165 ~~~I~~t~G~~eal~~~~~~l~~~~l~-~~Gd~Vlv~~P~y~~~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 241 (546)
T 2zy4_A 165 SVNLFAVEGGTAAMAYIFESLKLNGLL-KAGDKVAIGMPVFTPYIEIPE--LAQYALEEVAINADPSLNWQYPDSELDKL 241 (546)
T ss_dssp GEEEEEEEHHHHHHHHHHHHHHHTTSS-CTTCEEEEEESCCHHHHHHHH--STTSCCEEEEEECBGGGTTBCCHHHHGGG
T ss_pred cceEEEECCHHHHHHHHHHHhhhhhcC-CCCCEEEEeCCCCccHHHHHH--HcCCCcEEEEEecCcccCCCCCHHHHHHh
Confidence 4578888999888877665521 11 278999999999999887753 2345787777653 34555
Q ss_pred cCCCEeEEEEEcC-CCCeeecc---HHHHHHHH--HhCCcEEEEEeccccccCCC--CCCc--ccceEEEecC-cccccc
Q 001990 294 KSGDVCGVLVQYP-GTEGEVLD---YGDFIKNA--HANGVKVVMATDLLALTILK--PPGE--LGADIVVGSA-QRFGVP 362 (985)
Q Consensus 294 l~~~t~~V~v~~p-n~~G~i~d---l~~I~~~a--~~~galliV~a~~~alg~l~--~p~~--~GaDi~v~s~-k~lg~P 362 (985)
+++++++|++.+| |++|.+.+ +++|+++| +++|+++++|. ..+..... +..+ .+.+|++.|. |.++.|
T Consensus 242 ~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De-~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~ 320 (546)
T 2zy4_A 242 KDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDD-VYGTFADDFQSLFAICPENTLLVYSFSKYFGAT 320 (546)
T ss_dssp GSTTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEEC-TTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCG
T ss_pred hCCCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeC-cchhhcccCcCHHHhCCCCEEEEEeCccccCCC
Confidence 6678999999998 68998875 67788888 78899999953 32211111 1111 2567889887 877543
Q ss_pred CCCCCCceEEEEEchh-hHhcC----CCceee-eeec-CC-CCcceEEeccccc-cccccc--ccCCCccchhHH-HHHH
Q 001990 363 MGYGGPHAAFLATSQE-YKRMM----PGRIVG-VSID-SS-GKPALRVAMQTRE-QHIRRD--KATSNICTAQAL-LANM 430 (985)
Q Consensus 363 ~~~GGP~~G~l~~~~~-~~~~l----p~~~vG-~s~d-~~-g~~~~~l~l~tre-~~~rre--~atsni~t~~~l-~a~~ 430 (985)
|=-+|+++++++ +++++ |....- .... .. ....+.+.+..|- ...|+- ..+..+++.... .++.
T Consensus 321 ----GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~ 396 (546)
T 2zy4_A 321 ----GWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALF 396 (546)
T ss_dssp ----GGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHH
T ss_pred ----CcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHH
Confidence 112699998875 55443 210000 0000 00 0000000000000 000000 011122221111 1111
Q ss_pred HHHHHHHc--CcchHHHHHHHHHHHHHHHHHHHhcCCCEEEcC-C-CCcceEEEecC-------------------C-HH
Q 001990 431 AAMYAVYH--GPEGLKTIAQRVHGLAGTFALGLKKLGTVEVQG-L-PFFDTVKVKCA-------------------D-AH 486 (985)
Q Consensus 431 aa~y~~~~--g~~Gl~~i~~~~~~~a~~l~~~L~~~g~~~~~~-~-~~~~~~~i~~~-------------------~-~~ 486 (985)
+. .+++ +..-++++.+...++.+++.+.|. .+ +.+.. . .++ +-++++ . ..
T Consensus 397 a~--~all~~~~~~~~~~r~~~~~r~~~l~~~L~-~~-~~~~~~~~~~~--l~~~l~~~~~~~~~~~~~~wl~~~~~~~~ 470 (546)
T 2zy4_A 397 SL--FALMDEADEYKHTLKQLIRRRETTLYRELG-MP-PLRDENAVDYY--TLIDLQDVTAKLYGEAFSEWAVKQSSTGD 470 (546)
T ss_dssp HH--HHHHCTTCHHHHHHHHHHHHHHHHHHGGGT-SS-CCCCTTBCCSE--EEEEHHHHHHHHHCHHHHHHHHHHCCHHH
T ss_pred HH--HHHHhccHHHHHHHHHHHHHHHHHHHHhcC-CC-cccCCCCeeEE--EEEEHHHhhcccccHHHHHHhhccCCHHH
Confidence 11 1232 222356677777777788888875 44 43221 1 121 223321 1 23
Q ss_pred HHHHHHHHcCceeeee-----cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 487 AIASAAYKIEMNLRVV-----DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 487 ~l~~~L~~~Gi~~~~~-----~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
.+.+.|.++||.+... .++.+|+++. ..++++++++++.|..
T Consensus 471 ~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~-~~~~e~i~~~~~~l~~ 517 (546)
T 2zy4_A 471 MLFRIADETGIVLLPGRGFGSNRPSGRASLA-NLNEYEYAAIGRALRK 517 (546)
T ss_dssp HHHHHHHHHSCCCEESSCTTCSSCEEEEESS-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCEEEeCccccCCCCCeEEEEec-cCCHHHHHHHHHHHHH
Confidence 4667777889987542 2468999997 4579999999999874
No 467
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=98.27 E-value=6.7e-10 Score=129.55 Aligned_cols=275 Identities=15% Similarity=0.149 Sum_probs=157.0
Q ss_pred HHHHHHHHHHHHhh-CCCCcceeeccchHHHHHHHHHHhh-hhcCCCCEEEEcCC-CChhHHHHHHHhhcCCCe--EEEE
Q 001990 211 ESLLNFQTMIADLT-GLPMSNASLLDEGTAAAEAMAMCNN-IQKGKKKTFIIASN-CHPQTIDICITRADGFDI--KVVV 285 (985)
Q Consensus 211 ~~i~e~q~~ia~L~-g~~~~~~sl~~~~ta~~ea~~~a~~-~~~~~g~~Vlv~~~-~h~s~~~~~~~~a~~~gi--~v~~ 285 (985)
+...++.+.+++++ +.+ .+.++++||.++++++.+.+ ++ ++++||+.+. -|......+ +-....|+ .+..
T Consensus 140 ~~~~~Lae~L~~~~p~~~--~v~~~nSGseA~~~Aik~ar~~t--gr~~ii~~~~~yHG~~~~~~-sg~~~~g~~~~~~~ 214 (465)
T 2yky_A 140 ENEALFAEAVCDRFPSID--LVRFTNSGTEANLMALATATAIT--GRKTVLAFDGGYHGGLLNFA-SGHAPTNAPYHVVL 214 (465)
Confidence 33456778899998 444 47778999988888765433 23 5688887774 555555443 10011233 2222
Q ss_pred ---eCchhhhc-cC---CCEeEEEEEc-CCCCeeecc----HHHHHHHHHhCCcEEEEEeccccccCCCCC---Cccc--
Q 001990 286 ---SDLKDIDY-KS---GDVCGVLVQY-PGTEGEVLD----YGDFIKNAHANGVKVVMATDLLALTILKPP---GELG-- 348 (985)
Q Consensus 286 ---~~~~~l~~-l~---~~t~~V~v~~-pn~~G~i~d----l~~I~~~a~~~galliV~a~~~alg~l~~p---~~~G-- 348 (985)
.|+++|++ ++ +++++|++.. ++.+|.+.+ +++|.++|+++|+++++| +..+ +..... ..+|
T Consensus 215 ~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~D-Ev~~-~r~g~~~a~~~~gv~ 292 (465)
T 2yky_A 215 GVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFD-EVMT-SRLSGGGAQEMLGIS 292 (465)
Confidence 34566766 65 6788888764 355897776 999999999999999994 3334 211111 1233
Q ss_pred ceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhH-HH
Q 001990 349 ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQA-LL 427 (985)
Q Consensus 349 aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~-l~ 427 (985)
.|+++ -+|.+++ |--+|++++++++++.+.+...| . + ...+|. +.+.. ..
T Consensus 293 pDi~t-~sK~lg~-----G~piG~v~~~~~i~~~l~~~~~g-------~--~------------~~~~T~--~~npla~a 343 (465)
T 2yky_A 293 ADLTT-LGKYIGG-----GMSFGAFGGRRDLMERFDPARDG-------A--F------------AHAGTF--NNNILTMS 343 (465)
Confidence 56543 2488863 21257888888887766321001 0 0 000111 11111 11
Q ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcCC-CEEEc----CCCCcceEEEec-------------CC-HHHH
Q 001990 428 ANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG-TVEVQ----GLPFFDTVKVKC-------------AD-AHAI 488 (985)
Q Consensus 428 a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g-~~~~~----~~~~~~~~~i~~-------------~~-~~~l 488 (985)
+..+++ ..+.. +.+.++..++.++++++|+++. .+.+. +...+-.|.+.. .. ..++
T Consensus 344 Aa~aaL--~~l~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~ 418 (465)
T 2yky_A 344 AGHAAL--TQIYT---RQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELF 418 (465)
Confidence 112222 33323 2467777888888888887751 12221 111111122211 11 4578
Q ss_pred HHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhCC
Q 001990 489 ASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGG 530 (985)
Q Consensus 489 ~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~~ 530 (985)
.+.|.++||.+.....+. ++..+|++||++++++|...
T Consensus 419 ~~~ll~~GV~v~p~~~~~----~s~~~t~edid~~l~~l~~~ 456 (465)
T 2yky_A 419 FFHMLRKGIYLAPRGMYA----LSLEIADAGRDAFAEALADF 456 (465)
Confidence 888999999886532222 55679999999999999753
No 468
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=98.62 E-value=6.7e-06 Score=95.50 Aligned_cols=274 Identities=15% Similarity=0.122 Sum_probs=153.9
Q ss_pred HHHHHHHHhhCCCC-cceeeccchHHHHHHHH-HHhhhhcCCCCEEEEcC-CCChhHHHHHHHhhc------C---CCeE
Q 001990 215 NFQTMIADLTGLPM-SNASLLDEGTAAAEAMA-MCNNIQKGKKKTFIIAS-NCHPQTIDICITRAD------G---FDIK 282 (985)
Q Consensus 215 e~q~~ia~L~g~~~-~~~sl~~~~ta~~ea~~-~a~~~~~~~g~~Vlv~~-~~h~s~~~~~~~~a~------~---~gi~ 282 (985)
++.+.+++++..+. ..+.++++||.+.|+++ +|..++ .+++|+.-+ +-|..+...+..-.. . +.-.
T Consensus 111 ~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t--~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~ 188 (456)
T 4atq_A 111 AVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLAT--GRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPE 188 (456)
T ss_dssp HHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH--CCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSS
T ss_pred HHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhh--cCCeEEEEecccCCccccccccccCccccccCCCCcccc
Confidence 34567888885432 33556789999999876 565555 667887665 667665544421111 1 1122
Q ss_pred EEEeCc--------------hh-------hhc-cC-CCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEEEEec
Q 001990 283 VVVSDL--------------KD-------IDY-KS-GDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVVMATD 334 (985)
Q Consensus 283 v~~~~~--------------~~-------l~~-l~-~~t~~V~v~~p-n~~G~i~d----l~~I~~~a~~~galliV~a~ 334 (985)
+..+|. +. +++ ++ +++++|++.-- ..-|.+.+ +++|.++|+++|+++|+| +
T Consensus 189 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~D-E 267 (456)
T 4atq_A 189 VYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIAD-E 267 (456)
T ss_dssp EEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEE-C
T ss_pred ceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEec-c
Confidence 333332 11 112 22 46888887642 45677653 899999999999999995 2
Q ss_pred cc-cccCCCC---CCccc--ceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEeccccc
Q 001990 335 LL-ALTILKP---PGELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTRE 408 (985)
Q Consensus 335 ~~-alg~l~~---p~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre 408 (985)
.. ++|-... -..+| .||++. +|.++ .|.|- |.+.+++++.+.+.+...|
T Consensus 268 V~tG~GRtG~~~a~e~~gv~PDivt~-gK~lg----gg~P~-~av~~~~~i~~~~~~~~~~------------------- 322 (456)
T 4atq_A 268 VQSGFCRTGEWFAVDHEGVVPDIITM-AKGIA----GGLPL-SAITGRADLLDAVHPGGLG------------------- 322 (456)
T ss_dssp TTTTTTTTSSSSGGGGTTCCCSEEEE-CGGGG----TTSSC-EEEEEEHHHHTTSCTTSSC-------------------
T ss_pred cccccCCccccccccccCCCCchhhh-hhccc----CcCCc-eeeEecHHHHhcccccCCC-------------------
Confidence 21 2321111 12233 598765 47775 34454 4456777777665321111
Q ss_pred ccccccccCCCccchhHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHhcC----C--CEEEcCC----CCcceE
Q 001990 409 QHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGTFALGLKKL----G--TVEVQGL----PFFDTV 478 (985)
Q Consensus 409 ~~~rre~atsni~t~~~l~a~~aa~y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~----g--~~~~~~~----~~~~~~ 478 (985)
+| +-..+.+..+..++ +..+..++ +.++..++.++++++|+++ . +..++.+ -.+--|
T Consensus 323 -------~T-f~gnpla~aaala~--L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~gi 389 (456)
T 4atq_A 323 -------GT-YGGNPVACAAALAA--IDTMEQHD---LNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAI 389 (456)
T ss_dssp -------CS-SSSCHHHHHHHHHH--HHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEE
T ss_pred -------CC-CCCChHHHHhhHHH--HHHHhhcc---HHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEE
Confidence 11 11111122222222 34454444 3455566667777666553 1 0011110 011112
Q ss_pred EEecC-----C---HHHHHHHHHHcCceeeeec--CCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 479 KVKCA-----D---AHAIASAAYKIEMNLRVVD--SNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 479 ~i~~~-----~---~~~l~~~L~~~Gi~~~~~~--~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
-+..+ . +..+.+++.++|+.+.... ++.||+++....|++|+|+++++|..
T Consensus 390 el~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~ 450 (456)
T 4atq_A 390 ELVQPGSKEPNAELTKAVAAACLKEGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAA 450 (456)
T ss_dssp EEBCTTSCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred EEecCCCCCcCHHHHHHHHHHHHHCCCEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22211 1 5678899999999886542 57899999999999999999999874
No 469
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=98.49 E-value=1.3e-05 Score=93.55 Aligned_cols=289 Identities=12% Similarity=0.143 Sum_probs=159.2
Q ss_pred HHHHHHHHhhCCCCcceeeccchHHHHHHHH-HHhhhh--c--CCCCEEEEcC-CCChhHHHHHHHhh----cC-----C
Q 001990 215 NFQTMIADLTGLPMSNASLLDEGTAAAEAMA-MCNNIQ--K--GKKKTFIIAS-NCHPQTIDICITRA----DG-----F 279 (985)
Q Consensus 215 e~q~~ia~L~g~~~~~~sl~~~~ta~~ea~~-~a~~~~--~--~~g~~Vlv~~-~~h~s~~~~~~~~a----~~-----~ 279 (985)
++-+.|++++..+...+-+.++||.+.|+++ +|..+. + .++.+||.-. +-|..+...+..-- +. .
T Consensus 115 ~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~ 194 (473)
T 4e3q_A 115 MLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLP 194 (473)
T ss_dssp HHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCT
T ss_pred HHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCC
Confidence 4557888888655555777799999999876 554331 1 1456677555 66766655442100 01 1
Q ss_pred CeEEEEeCc-------------------hhhhc-c----CCCEeEEEEEcC-CCCeeecc----HHHHHHHHHhCCcEEE
Q 001990 280 DIKVVVSDL-------------------KDIDY-K----SGDVCGVLVQYP-GTEGEVLD----YGDFIKNAHANGVKVV 330 (985)
Q Consensus 280 gi~v~~~~~-------------------~~l~~-l----~~~t~~V~v~~p-n~~G~i~d----l~~I~~~a~~~galli 330 (985)
+......|. +++++ + .+++++|++.-- ..-|.+.+ +++|.++|+++|+++|
T Consensus 195 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI 274 (473)
T 4e3q_A 195 GFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVI 274 (473)
T ss_dssp TEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEE
T ss_pred cccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEe
Confidence 222221111 12222 1 346777777642 45676653 8999999999999999
Q ss_pred EEeccc-cccCCCCC---Cccc--ceEEEecCccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEec
Q 001990 331 MATDLL-ALTILKPP---GELG--ADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAM 404 (985)
Q Consensus 331 V~a~~~-alg~l~~p---~~~G--aDi~v~s~k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l 404 (985)
+| +.. .+|-.... ..+| .||++ -+|.++ .|+--+|.+.+++++.+.+.+..-. . + .
T Consensus 275 ~D-EV~tGfGRtG~~fa~e~~gv~PDi~t-~~K~l~----gG~~Pl~av~~~~~i~~~~~~~~~~---~--~-~------ 336 (473)
T 4e3q_A 275 SD-EVICGFGRTGNTWGCVTYDFTPDAII-SSKNLT----AGFFPMGAVILGPELSKRLETAIEA---I--E-E------ 336 (473)
T ss_dssp EE-CTTTSSSTTSSSCHHHHTTCCCSEEE-ECGGGG----TTSSCCEEEEECHHHHHHHHHHHHH---H--S-C------
T ss_pred cc-CccccCCcccchhHHHhcCCCCChHH-hccccc----CCCCCcccccccHHHHHHhcccccc---c--c-c------
Confidence 95 322 33322111 1123 58865 357775 2323345666788876654211000 0 0 0
Q ss_pred ccccccccccccCCCccchhHHHHHHHHH-HHHHcCcchHHHHHHHHHHHHHHHHHHHhcCC---CEE-EcCCCCcceEE
Q 001990 405 QTREQHIRRDKATSNICTAQALLANMAAM-YAVYHGPEGLKTIAQRVHGLAGTFALGLKKLG---TVE-VQGLPFFDTVK 479 (985)
Q Consensus 405 ~tre~~~rre~atsni~t~~~l~a~~aa~-y~~~~g~~Gl~~i~~~~~~~a~~l~~~L~~~g---~~~-~~~~~~~~~~~ 479 (985)
...|+.+-. .++ +.++++ -+..+..++ +.++..++..+|+++|+++. .+. +-+.-.+-.+-
T Consensus 337 --------~~hg~T~~G--npl-a~Aaala~L~~i~~~~---l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG~Gl~~gie 402 (473)
T 4e3q_A 337 --------FPHGFTASG--HPV-GCAIALKAIDVVMNEG---LAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALE 402 (473)
T ss_dssp --------CCCCCTTTT--CHH-HHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEE
T ss_pred --------cccCCCCCC--Ccc-hhhhhhhhhhhhcccc---HHHHHHHHHHHHHHHHHHHhcCCCeeEEeecceEEEEE
Confidence 001111111 222 222222 234454444 45566677888888887641 111 10000011111
Q ss_pred Ee----------cC-C-HHHHHHHHHHcCceeeeecCCeEEEEeccCCCHHHHHHHHHHHhCCCCCCCCHHhhhh
Q 001990 480 VK----------CA-D-AHAIASAAYKIEMNLRVVDSNTVTASFDETTTLEDVDKLFIVFAGGKSVPFTAASLAE 542 (985)
Q Consensus 480 i~----------~~-~-~~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~edid~ll~~l~~~~~~~~~~~~l~~ 542 (985)
+. .. . ...+.+.+.++|+.++.. ++.+++++....|++|+|+++++|... ++++++
T Consensus 403 lv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~-g~~i~l~PPL~it~~eid~~~~~l~~a------l~~v~a 470 (473)
T 4e3q_A 403 AVKDKASKTPFDGNLSVSERIANTCTDLGLICRPL-GQSVVLCPPFILTEAQMDEMFDKLEKA------LDKVFA 470 (473)
T ss_dssp ECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEE-TTEEEECCCTTCCHHHHHHHHHHHHHH------HHHHHH
T ss_pred EecCccccccccccHHHHHHHHHHHHHCCcEEEec-CCEEEEeCCCCCCHHHHHHHHHHHHHH------HHHHHH
Confidence 11 00 1 567899999999988764 578999999999999999999999853 666654
No 470
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=98.41 E-value=1.5e-05 Score=91.39 Aligned_cols=305 Identities=14% Similarity=0.080 Sum_probs=163.3
Q ss_pred cCCCCCC-----CCCcHHHHHH--HH-hCCccccccCCChhhHhhHHHHHHHHHHHHHHHhh-CC-----CCcc--eeec
Q 001990 171 IGMGYYN-----THVPPVILRN--IM-ENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLT-GL-----PMSN--ASLL 234 (985)
Q Consensus 171 lG~g~~~-----~~~p~~v~~~--i~-~~~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~-g~-----~~~~--~sl~ 234 (985)
+|.|.|+ ...|+.+.++ ++ .. ...+.|+|.+ |.. ++++.+|+++ +. ++.+ +..+
T Consensus 34 l~~G~~~d~~~~~~~~~~v~~a~~~~~~~-~~~~~Y~~~~-----G~~----~lr~aia~~~~~~~~~~~~~~~i~i~~t 103 (405)
T 3k7y_A 34 LSIGVCCNDDGDLHIFDSVLNADKLVTEN-YKEKPYLLGN-----GTE----DFSTLTQNLIFGNNSKYIEDKKICTIQC 103 (405)
T ss_dssp CSCSSCBCTTSSBCCCHHHHHHHHHHHHH-CCCCCCCTTS-----SCH----HHHHHHHHHHHCSSCTTTTTTCEEEEEE
T ss_pred eeeeeeECCCCCCcccHHHHHHHHHhcCC-CCCCCCCCCC-----CcH----HHHHHHHHHHcCCCCccccccceEEEEc
Confidence 4677652 2356777544 22 22 2245666532 322 3455666554 22 1232 4677
Q ss_pred cchHHHHHHHHHHhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeEEEEeCc----------hhhhc-cC--CCEeEE
Q 001990 235 DEGTAAAEAMAMCNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIKVVVSDL----------KDIDY-KS--GDVCGV 301 (985)
Q Consensus 235 ~~~ta~~ea~~~a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~v~~~~~----------~~l~~-l~--~~t~~V 301 (985)
.|++.++..++.++... .+ |+|++++-.++.+...++ ..|.+++.++. +++++ +. ++++++
T Consensus 104 ~G~~~al~~~~~~l~~~-~~-d~Vlv~~P~y~~~~~~~~----~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i 177 (405)
T 3k7y_A 104 IGGTGAIFVLLEFLKML-NV-ETLYVTNPPYINHVNMIE----SRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSV 177 (405)
T ss_dssp EHHHHHHHHHHHHHHTT-TC-CEEEEESSCCHHHHHHHH----TTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEE
T ss_pred CchHHHHHHHHHHHHhc-CC-CEEEEeCCCCHhHHHHHH----HcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEE
Confidence 88888777766554311 16 999999999999988764 46888887764 23444 42 456778
Q ss_pred EEEcC--CCCeeec---cHHHHHHHHHhCCcEEEEEeccccccC--CC-C--C----Ccccce-EEEecC-ccccccCCC
Q 001990 302 LVQYP--GTEGEVL---DYGDFIKNAHANGVKVVMATDLLALTI--LK-P--P----GELGAD-IVVGSA-QRFGVPMGY 365 (985)
Q Consensus 302 ~v~~p--n~~G~i~---dl~~I~~~a~~~galliV~a~~~alg~--l~-~--p----~~~GaD-i~v~s~-k~lg~P~~~ 365 (985)
++..| |++|.+. .+++|+++|+++|++++.|.-...+.. .. + + ...+-. |++.|. |.|+.|
T Consensus 178 ~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~--- 254 (405)
T 3k7y_A 178 ILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLY--- 254 (405)
T ss_dssp EECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCT---
T ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCc---
Confidence 87653 8999885 578889999999999999531111110 00 0 0 011222 456665 888643
Q ss_pred CCCceEEEEE---chhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHHH--cC-
Q 001990 366 GGPHAAFLAT---SQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAVY--HG- 439 (985)
Q Consensus 366 GGP~~G~l~~---~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~~--~g- 439 (985)
|=-+|++.+ ++++++.+-.. + ....| ..+.|++. +...+++.++.. ++
T Consensus 255 -GlRiG~~~~~~~~~~~~~~~~~~-----------------l----~~~~~---~~~~~~~~-~~q~~~~~~l~~~~l~~ 308 (405)
T 3k7y_A 255 -GERAGALHIVCKNQEEKKIVFNN-----------------L----CFIVR---KFYSSPVI-HTNRILCQLLNNQNLKL 308 (405)
T ss_dssp -TTTEEEEEEECSSHHHHHHHHHH-----------------H----HHHHH---TTTSSCCH-HHHHHHHHHHHCHHHHH
T ss_pred -cccceEEEEEeCCHHHHHHHHHH-----------------H----HHHHh---cccCCCcH-HHHHHHHHHhCCHHHHH
Confidence 235688753 33443322000 0 00001 01112111 111111111111 00
Q ss_pred --cchHHHHHHHHHHHHHHHHHHHh----cCCC---EEEcCCCCcceEEE-ecCCHHHHHHHHHHcCceeeeecCCeEEE
Q 001990 440 --PEGLKTIAQRVHGLAGTFALGLK----KLGT---VEVQGLPFFDTVKV-KCADAHAIASAAYKIEMNLRVVDSNTVTA 509 (985)
Q Consensus 440 --~~Gl~~i~~~~~~~a~~l~~~L~----~~g~---~~~~~~~~~~~~~i-~~~~~~~l~~~L~~~Gi~~~~~~~~~lri 509 (985)
.+-+++..++..++.+++.+.|+ ++|. +++... ...-|.+ ..+ .+..++|.++||.+.. .+ |+
T Consensus 309 ~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p-~gg~f~~~~l~--~~~~~~L~~~gV~v~p--~~--Ri 381 (405)
T 3k7y_A 309 NWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKK-QRGLFSFVPLL--AKIAEHLKTHHIYIIN--NG--RI 381 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSS-CCSSEEECGGG--GGGTTTTTTTTEECCT--TS--EE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccC-CceEEEecCCC--HHHHHHHHHCCEeecC--CC--eE
Confidence 12345566677888889999998 7751 233321 1111222 222 2344667667997754 23 88
Q ss_pred EeccCCCHHHHHHHHHHHh
Q 001990 510 SFDETTTLEDVDKLFIVFA 528 (985)
Q Consensus 510 s~~~~~t~edid~ll~~l~ 528 (985)
|+.-. ++++|+.++++|.
T Consensus 382 s~a~~-~~~~i~~~~~~i~ 399 (405)
T 3k7y_A 382 NVSGI-TKNNVDYIADKIC 399 (405)
T ss_dssp EGGGC-CTTHHHHHHHHHH
T ss_pred EEecc-CHHHHHHHHHHHH
Confidence 87643 4567888888776
No 471
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=98.33 E-value=2.9e-05 Score=89.22 Aligned_cols=312 Identities=15% Similarity=0.130 Sum_probs=159.1
Q ss_pred cCCCCCCC-----CCcHHHHH---HHHhCCccccccCCChhhHhhHHHHHHHHHHHHHHHhh-CCC--Ccc--eeeccch
Q 001990 171 IGMGYYNT-----HVPPVILR---NIMENPAWYTQYTPYQAEIAQGRLESLLNFQTMIADLT-GLP--MSN--ASLLDEG 237 (985)
Q Consensus 171 lG~g~~~~-----~~p~~v~~---~i~~~~~~~t~~~py~~e~sqg~l~~i~e~q~~ia~L~-g~~--~~~--~sl~~~~ 237 (985)
||-|.|.. .+++.|.+ .+++. ++.-.|+|.+ |. -+|++.+++++ |-. ... ..-+.+|
T Consensus 49 LgvG~y~d~~g~~~vl~~Vk~A~~~~~~~-~~~~~Y~p~~-----G~----p~lr~aia~~~~g~~~~~~~~~~~qt~gg 118 (420)
T 4h51_A 49 LVIGAYRDEQGRPYPLRVVRKAEQLLLDM-NLDYEYLPIS-----GY----QPFIDEAVKIIYGNTVELENLVAVQTLSG 118 (420)
T ss_dssp CCSCCCBCTTSCBCCCHHHHHHHHHHHHT-TCCCCCCCTT-----CC----HHHHHHHHHHHHC---CGGGEEEEEEEHH
T ss_pred eecCcccCCCCCCCCCHHHHHHHHHHhcC-CCCCCCCCcC-----Ch----HHHHHHHHHHhcCCCccccccceeeecCc
Confidence 68887632 24344532 23333 3323576643 22 23555666654 322 222 2235677
Q ss_pred HHHHHHHHH-HhhhhcCCCCEEEEcCCCChhHHHHHHHhhcCCCeE-EEEe---C-------chhhhc----cCCCEeEE
Q 001990 238 TAAAEAMAM-CNNIQKGKKKTFIIASNCHPQTIDICITRADGFDIK-VVVS---D-------LKDIDY----KSGDVCGV 301 (985)
Q Consensus 238 ta~~ea~~~-a~~~~~~~g~~Vlv~~~~h~s~~~~~~~~a~~~gi~-v~~~---~-------~~~l~~----l~~~t~~V 301 (985)
|+++...+. ..+...++||+|++++-.++.+...++. .|.+ +... + .+.+.+ ..++++.+
T Consensus 119 tga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~----aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vl 194 (420)
T 4h51_A 119 TGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKA----AGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFI 194 (420)
T ss_dssp HHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHH----TTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEE
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHH----cCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEE
Confidence 777654332 2222123899999999999988888764 3443 2221 1 122222 35667766
Q ss_pred EEEcC-CCCeeec---cHHHHHHHHHhCCcEEEEEeccccc--cCCC-CC------CcccceE-EEecC-ccccccCCCC
Q 001990 302 LVQYP-GTEGEVL---DYGDFIKNAHANGVKVVMATDLLAL--TILK-PP------GELGADI-VVGSA-QRFGVPMGYG 366 (985)
Q Consensus 302 ~v~~p-n~~G~i~---dl~~I~~~a~~~galliV~a~~~al--g~l~-~p------~~~GaDi-~v~s~-k~lg~P~~~G 366 (985)
++.+| |++|.+. ++++|+++|++++.+++.+.-...+ +... ++ .+.+-.+ ++.|. |.++.+
T Consensus 195 l~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~---- 270 (420)
T 4h51_A 195 LHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLY---- 270 (420)
T ss_dssp EESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCG----
T ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccc----
Confidence 66677 8999875 5889999999999998885311122 1110 00 0122233 45554 877643
Q ss_pred CCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHH-----HHcCcc
Q 001990 367 GPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYA-----VYHGPE 441 (985)
Q Consensus 367 GP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~-----~~~g~~ 441 (985)
|--+|++.+..+..+.+. ++. ..-..+.|- ..+|. ....+..++..+ ...-.+
T Consensus 271 G~RvG~~~~~~~~~~~~~-~~~-----------------~~l~~~~r~-~~s~~---p~~~a~~~~~~l~d~~l~~~~~~ 328 (420)
T 4h51_A 271 SERAGTLSLLLKDKTKRA-DVK-----------------SVMDSLIRE-EYTCP---PAHGARLAHLILSNNELRKEWEA 328 (420)
T ss_dssp GGCEEEEEEECSCHHHHH-HHH-----------------HHHHHHHHT-TTSSC---CHHHHHHHHHHHHSHHHHHHHHH
T ss_pred cCceEEEEecccCHHHHH-HHH-----------------HHHHHhhhc-ccCcc---hHHHHHHHHHHhcCHHHHHHHHH
Confidence 234677766433222110 000 000001110 11222 122121222111 111123
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCEEE-cC--CCCcceEEEecCCHHHHHHHHHHcCceeeeecCCeEEEEeccCCCHH
Q 001990 442 GLKTIAQRVHGLAGTFALGLKKLGTVEV-QG--LPFFDTVKVKCADAHAIASAAYKIEMNLRVVDSNTVTASFDETTTLE 518 (985)
Q Consensus 442 Gl~~i~~~~~~~a~~l~~~L~~~g~~~~-~~--~~~~~~~~i~~~~~~~l~~~L~~~Gi~~~~~~~~~lris~~~~~t~e 518 (985)
-++.+.++..+..+.|.+.|+++| ... +. .+...-|++ .+-..+..+.|.++||++-. ++ |||+.- -+++
T Consensus 329 ~~~~m~~r~~~~R~~l~~~L~~~g-~~~~~~~i~~q~GmF~~-~gls~e~v~~L~e~~Vy~~~--~g--Ris~Ag-l~~~ 401 (420)
T 4h51_A 329 ELSAMAERIRTMRRTVYDELLRLQ-TPGSWEHVINQIGMFSF-LGLSKAQCEYCQNHNIFITV--SG--RANMAG-LTHE 401 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT-CSSCCTHHHHCCSSEEE-CCCCHHHHHHHHHTTEECCT--TC--EEEGGG-CCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCeecCCCceEEe-cCcCHHHHHHHHhCCEEEcC--CC--EEEecc-CCHH
Confidence 356777888888899999999876 210 00 000011443 11133445788899997642 23 888764 4678
Q ss_pred HHHHHHHHHhC
Q 001990 519 DVDKLFIVFAG 529 (985)
Q Consensus 519 did~ll~~l~~ 529 (985)
.|++++++|.+
T Consensus 402 ni~~~a~aI~~ 412 (420)
T 4h51_A 402 TALMLAQTIND 412 (420)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999888863
No 472
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=98.06 E-value=0.00018 Score=89.61 Aligned_cols=284 Identities=14% Similarity=0.100 Sum_probs=149.9
Q ss_pred HHHHHHHHHHhhCCC-CcceeeccchHHHHHHHH-HHhh-hhc--C----------CCCEEEEc-CCCChhHHHHHHHhh
Q 001990 213 LLNFQTMIADLTGLP-MSNASLLDEGTAAAEAMA-MCNN-IQK--G----------KKKTFIIA-SNCHPQTIDICITRA 276 (985)
Q Consensus 213 i~e~q~~ia~L~g~~-~~~~sl~~~~ta~~ea~~-~a~~-~~~--~----------~g~~Vlv~-~~~h~s~~~~~~~~a 276 (985)
..++.+.++++++.+ ...+-+.++|+.+.|+++ ||++ +.. + ++.+||.- .+-|..+...+..-.
T Consensus 426 ~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg 505 (831)
T 4a0g_A 426 ALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQA 505 (831)
T ss_dssp HHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSC
T ss_pred HHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccC
Confidence 346778999999743 234667799999999876 6643 321 1 13467754 478888877664210
Q ss_pred ----c---------CCCeE-------------EEEeC---------------c------------------hhhhc-cC-
Q 001990 277 ----D---------GFDIK-------------VVVSD---------------L------------------KDIDY-KS- 295 (985)
Q Consensus 277 ----~---------~~gi~-------------v~~~~---------------~------------------~~l~~-l~- 295 (985)
+ .++.- ....| . ++|++ +.
T Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~ 585 (831)
T 4a0g_A 506 PSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQE 585 (831)
T ss_dssp CCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC--
T ss_pred ccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHh
Confidence 0 11110 11111 0 23443 42
Q ss_pred -------CCEeEEEEEcC--CCCeeecc----HHHHHHHHHhCCcEEEEEecc-ccccCCCCC---Cccc--ceEEEecC
Q 001990 296 -------GDVCGVLVQYP--GTEGEVLD----YGDFIKNAHANGVKVVMATDL-LALTILKPP---GELG--ADIVVGSA 356 (985)
Q Consensus 296 -------~~t~~V~v~~p--n~~G~i~d----l~~I~~~a~~~galliV~a~~-~alg~l~~p---~~~G--aDi~v~s~ 356 (985)
+++++|++..- +.-|.+.+ +++|.++|+++|+++|+| +. .++|-.... ..+| .||++ -+
T Consensus 586 ~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~D-EV~tGfGRtG~~fa~e~~gv~PDiit-ls 663 (831)
T 4a0g_A 586 HSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFD-EVFTGFWRLGVETTTELLGCKPDIAC-FA 663 (831)
T ss_dssp -------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEE-CTTTTTTTTSBSSTHHHHSSCCSEEE-EC
T ss_pred hhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEE-cCccccccCCCchhhHhcCCCCcEEE-Ee
Confidence 35677776542 45676654 899999999999999995 32 234332211 1234 47753 34
Q ss_pred ccccccCCCCCCceEEEEEchhhHhcCCCceeeeeecCCCCcceEEecccccccccccccCCCccchhHHHHHHHHHHHH
Q 001990 357 QRFGVPMGYGGPHAAFLATSQEYKRMMPGRIVGVSIDSSGKPALRVAMQTREQHIRRDKATSNICTAQALLANMAAMYAV 436 (985)
Q Consensus 357 k~lg~P~~~GGP~~G~l~~~~~~~~~lp~~~vG~s~d~~g~~~~~l~l~tre~~~rre~atsni~t~~~l~a~~aa~y~~ 436 (985)
|.|++ |.=-+|++.+++++.+.+... .+.. ....+.++-..+.+..+..+++ .
T Consensus 664 K~L~g----G~~Plgav~~~~~i~~~~~~~----------~~~~-----------~~~hg~T~~g~Pla~Aaala~L--~ 716 (831)
T 4a0g_A 664 KLLTG----GMVPLAVTLATDAVFDSFSGD----------SKLK-----------ALLHGHSYSAHAMGCATAAKAI--Q 716 (831)
T ss_dssp GGGGT----TSSCCEEEEECHHHHHTTCSS----------CGGG-----------SCCCCCTTTTCHHHHHHHHHHH--H
T ss_pred ccccc----CccCcEEEEECHHHHHHHhcc----------cccc-----------cceeecCCcccHHHHHHHHHHH--H
Confidence 87742 212246788899988876321 0000 0011111111111222222222 3
Q ss_pred HcCcchHHHHHHHHHHHH--------HHHHHHHhcCCCEEEc-CCCCcceEEEec-------CC--HHHHHHHHHHcCce
Q 001990 437 YHGPEGLKTIAQRVHGLA--------GTFALGLKKLGTVEVQ-GLPFFDTVKVKC-------AD--AHAIASAAYKIEMN 498 (985)
Q Consensus 437 ~~g~~Gl~~i~~~~~~~a--------~~l~~~L~~~g~~~~~-~~~~~~~~~i~~-------~~--~~~l~~~L~~~Gi~ 498 (985)
.+..+++. ++..++. +.+.+.+++.+.+.-+ +.-.+-.+.+.. .. +.++.++|.++||.
T Consensus 717 ~i~~~~l~---~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~ 793 (831)
T 4a0g_A 717 WFKDPETN---HNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIF 793 (831)
T ss_dssp HHHCTTTC---TTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEEETTEEEEEEC---------CHHHHHHHHHHHHTTEE
T ss_pred HHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHhhCCCceeEeecccEEEEEEecCccccccchHHHHHHHHHHHHCCcE
Confidence 33222221 1111111 1233444444322221 111111122211 11 66789999999999
Q ss_pred eeeecCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 499 LRVVDSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 499 ~~~~~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
++.. ++.+|++++..+|++||++++++|..
T Consensus 794 v~p~-g~~lrl~pp~~~t~e~id~~~~~l~~ 823 (831)
T 4a0g_A 794 TRPL-GNVIYLMCGPCTSPEICRRLLTKLYK 823 (831)
T ss_dssp CCCB-TTEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred EEec-CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 8764 57999999999999999999999974
No 473
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=62.39 E-value=8.4 Score=35.26 Aligned_cols=50 Identities=16% Similarity=0.401 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHhCCCCHHHhhhhcCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHH
Q 001990 104 SATPEDQAKMSELVGLDNLDSLIDATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQK 159 (985)
Q Consensus 104 ~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~ 159 (985)
|++.++.+++++.+|.+++++||+. .+- .++ +++- .+.+|+.|+++.|.+
T Consensus 40 ~~t~~eL~~~l~~~g~~~~~~l~n~---~~~~~k~-l~l~--~~~ls~~~~~~lm~~ 90 (119)
T 3f0i_A 40 SPSVEELKRLYQQLGLNEVRAMMRC---KEELYKE-LNLG--DSQLSDDALFAAMAE 90 (119)
T ss_dssp CCCHHHHHHHHHHHTCSSGGGGBCT---TSHHHHH-TTTT--CTTCCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHcCCccHHHHhcC---CCchhhh-cCcc--cccCCHHHHHHHHHh
Confidence 6899999999999999889999975 443 333 4543 247899998887654
No 474
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=59.30 E-value=10 Score=34.75 Aligned_cols=51 Identities=18% Similarity=0.385 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHhCCCCHHHhhhhcCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHH
Q 001990 103 NSATPEDQAKMSELVGLDNLDSLIDATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQK 159 (985)
Q Consensus 103 ~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~ 159 (985)
-|++.++.+++++.+|.+++++||+. .+- .++ +++- .+.+|+.|+++.|.+
T Consensus 40 ~~~~~~eL~~~l~~~g~~~~~~l~n~---~~~~~k~-l~l~--~~~ls~~~~~~lm~~ 91 (121)
T 3rdw_A 40 TPPSVDKLKELLQQLGFSDARQLMRT---KEDLYKT-LNLD--DRGLTQDQLLQAMAD 91 (121)
T ss_dssp SCCCHHHHHHHHHHTTCSSGGGGBCT---TSHHHHH-TTTT--CTTCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhcCCcCHHHHhcC---CChhhhh-cCcc--cccCCHHHHHHHHHh
Confidence 36789999999999999889999975 443 332 4442 257899998887653
No 475
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=32.66 E-value=1e+02 Score=29.49 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=39.8
Q ss_pred HHhcCcEEEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcCCCccccccCHHHHHHHHHHcC---CEEEE
Q 001990 697 AAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNG---GQVYM 765 (985)
Q Consensus 697 ~~~~G~~v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~pn~~G~i~~di~eI~~la~~~g---~lliV 765 (985)
++..|++|+.+..+ +.++++.+++.+++++. |.++.-++ .... .++++.+.+++.| +.+++
T Consensus 42 l~~~G~eVi~lG~~----~p~e~lv~aa~~~~~di--V~lS~~~~-~~~~-~~~~~i~~L~~~g~~~i~v~v 105 (161)
T 2yxb_A 42 LRDAGFEVVYTGLR----QTPEQVAMAAVQEDVDV--IGVSILNG-AHLH-LMKRLMAKLRELGADDIPVVL 105 (161)
T ss_dssp HHHTTCEEECCCSB----CCHHHHHHHHHHTTCSE--EEEEESSS-CHHH-HHHHHHHHHHHTTCTTSCEEE
T ss_pred HHHCCCEEEECCCC----CCHHHHHHHHHhcCCCE--EEEEeech-hhHH-HHHHHHHHHHhcCCCCCEEEE
Confidence 45789999877653 68999988887655554 44443222 2233 5788888888754 44555
No 476
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=30.98 E-value=57 Score=30.57 Aligned_cols=49 Identities=14% Similarity=0.354 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHhCCCCHHHhhhhcCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHH
Q 001990 104 SATPEDQAKMSELVGLDNLDSLIDATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQK 159 (985)
Q Consensus 104 ~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~ 159 (985)
|++.++.+++++..|+ ++++||+. .+- .+ .+++. .+.+|+.++++.|.+
T Consensus 38 ~~~~~eL~~~~~~~g~-p~~~l~n~---~~~~yk-~l~l~--~~~ls~~~~~~lm~~ 87 (141)
T 1s3c_A 38 PPSRDELVKLIADMGI-SVRALLRK---NVEPYE-QLGLA--EDKFTDDQLIDFMLQ 87 (141)
T ss_dssp CCCHHHHHHHHHHHTS-CHHHHBCS---SSHHHH-HTTTT--SSCCCHHHHHHHHHH
T ss_pred CccHHHHHHHhcccCC-CHHHhccC---CchhHH-hcCCc--cccCCHHHHHHHHHh
Confidence 5788999999999998 68999974 333 32 35553 347899998776654
No 477
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=29.63 E-value=31 Score=30.06 Aligned_cols=32 Identities=13% Similarity=-0.044 Sum_probs=25.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCHHHhhhhcCCCcc
Q 001990 102 HNSATPEDQAKMSELVGLDNLDSLIDATVPKSI 134 (985)
Q Consensus 102 ~~~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~ 134 (985)
-|||=-.-.++||..+|+.|+|||-.. =|.+.
T Consensus 8 ~LPNiG~~~e~~L~~vGI~s~e~L~~~-Ga~~a 39 (93)
T 3bqs_A 8 ELPNIGKVLEQDLIKAGIKTPVELKDV-GSKEA 39 (93)
T ss_dssp GSTTCCHHHHHHHHHTTCCSHHHHHHH-HHHHH
T ss_pred cCCCCCHHHHHHHHHcCCCCHHHHHhC-CHHHH
Confidence 366666778999999999999999974 34444
No 478
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=26.88 E-value=58 Score=29.51 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHhCCCCHHHhhhhcCCCcc-ccCCCCCCCCCCCCCHHHHHHHHHH
Q 001990 104 SATPEDQAKMSELVGLDNLDSLIDATVPKSI-RIDSMKFSKFDEGLTESQMIEHMQK 159 (985)
Q Consensus 104 ~~~~~~~~~ml~~~g~~~~~~l~~~~ip~~~-~~~~~~lp~~~~~~se~e~~~~~~~ 159 (985)
|++.++.+++++..|+ ++++||+. .+- .+. +++- .+.+|+.|+++.|.+
T Consensus 36 ~~~~~el~~~l~~~~~-~~~~l~n~---~~~~~k~-l~~~--~~~ls~~~~~~~m~~ 85 (120)
T 3l78_A 36 PLSRDELLKILSYTEN-GTEDIIST---RSKVFQK-LDID--VDELSVSELINLISK 85 (120)
T ss_dssp CCCHHHHHHHHHHCSS-THHHHBCT---TCHHHHH-TTCC--GGGCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHhhcCC-CHHHhhcC---CcHHHHH-cCCC--cccCCHHHHHHHHHh
Confidence 6788999999999887 49999975 443 322 4432 246899998887653
No 479
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=25.84 E-value=39 Score=29.37 Aligned_cols=26 Identities=12% Similarity=-0.056 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHHHhCCCCHHHhhhh
Q 001990 103 NSATPEDQAKMSELVGLDNLDSLIDA 128 (985)
Q Consensus 103 ~~~~~~~~~~ml~~~g~~~~~~l~~~ 128 (985)
+||=-...++||..+|+.|+|||-..
T Consensus 9 LPNig~~~e~~L~~~GI~t~~~Lr~~ 34 (93)
T 3mab_A 9 LPNIGKVLEQDLIKAGIKTPVELKDV 34 (93)
T ss_dssp STTCCHHHHHHHHHTTCCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHcCCCCHHHHHhC
Confidence 56655778999999999999999964
No 480
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=25.06 E-value=1e+02 Score=32.20 Aligned_cols=99 Identities=18% Similarity=0.172 Sum_probs=59.9
Q ss_pred CCEEEE---cCCCChhHHHHHHHh--------hcCC-CeEEEEe----Cchhhhc--cCCCEeEEEEEcCCCCe--eecc
Q 001990 255 KKTFII---ASNCHPQTIDICITR--------ADGF-DIKVVVS----DLKDIDY--KSGDVCGVLVQYPGTEG--EVLD 314 (985)
Q Consensus 255 g~~Vlv---~~~~h~s~~~~~~~~--------a~~~-gi~v~~~----~~~~l~~--l~~~t~~V~v~~pn~~G--~i~d 314 (985)
+.+|++ ....|.-=...+..+ .+.. |++++.+ |++++.+ ...+..+|.++.....+ .+..
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~~~d~VglS~l~t~~~~~~~~ 199 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELEADVLLVSQTVTQKNVHIQN 199 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTTCSEEEEECCCCTTSHHHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEEeecCCccchHHH
Confidence 345654 336785545555544 5667 9999875 4455543 23445566665543333 4567
Q ss_pred HHHHHHHHHhCC----cEEEEEeccccccCCCCCCcccceEEEecC
Q 001990 315 YGDFIKNAHANG----VKVVMATDLLALTILKPPGELGADIVVGSA 356 (985)
Q Consensus 315 l~~I~~~a~~~g----alliV~a~~~alg~l~~p~~~GaDi~v~s~ 356 (985)
++++.+.+++.| +.++||-.+..... ..+.|+|.++..+
T Consensus 200 ~~~~i~~L~~~g~~~~i~vivGG~~~~~~~---a~~iGad~~~~da 242 (262)
T 1xrs_B 200 MTHLIELLEAEGLRDRFVLLCGGPRINNEI---AKELGYDAGFGPG 242 (262)
T ss_dssp HHHHHHHHHHTTCGGGSEEEEECTTCCHHH---HHTTTCSEEECTT
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCcCCHHH---HHHcCCeEEECCc
Confidence 888999998877 77888432222111 2467999988776
No 481
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=23.82 E-value=87 Score=25.71 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCceeeee-cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 485 AHAIASAAYKIEMNLRVV-DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 ~~~l~~~L~~~Gi~~~~~-~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
++.+.++|...|+..... .....|+-++.+.++++.+++++.|+.
T Consensus 23 A~~~~~~L~~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 23 ADSLASNAEAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp HHHHHHHHHHHTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 888999999888865433 246789999999999999999999874
No 482
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=23.44 E-value=5.5e+02 Score=25.45 Aligned_cols=65 Identities=17% Similarity=0.252 Sum_probs=43.4
Q ss_pred HHhcCcEEEEEeCCCCCCCCHHHHHHHHHhcCCCeEEEEEEcCCCccccccCHHHHHHHHHHcC----CEEEEEc
Q 001990 697 AAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNG----GQVYMDG 767 (985)
Q Consensus 697 ~~~~G~~v~~v~~~~~g~iDle~L~~~i~~~~~~t~~Vvi~~pn~~G~i~~di~eI~~la~~~g----~lliVD~ 767 (985)
++..|++|+.+..+ +.++++-+++.+++++..++..+.-.+ .... .++++.+.+++.| +.+++=|
T Consensus 116 l~~~G~~Vi~LG~~----vp~e~iv~~~~~~~~d~v~l~~S~l~~-~~~~-~~~~~i~~l~~~~~~~~v~v~vGG 184 (215)
T 3ezx_A 116 LGANGFQIVDLGVD----VLNENVVEEAAKHKGEKVLLVGSALMT-TSML-GQKDLMDRLNEEKLRDSVKCMFGG 184 (215)
T ss_dssp HHHTSCEEEECCSS----CCHHHHHHHHHHTTTSCEEEEEECSSH-HHHT-HHHHHHHHHHHTTCGGGSEEEEES
T ss_pred HHHCCCeEEEcCCC----CCHHHHHHHHHHcCCCEEEEEchhccc-CcHH-HHHHHHHHHHHcCCCCCCEEEEEC
Confidence 46799999888764 689999888877666654442254222 3333 5888888888875 5666643
No 483
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=22.74 E-value=76 Score=26.34 Aligned_cols=45 Identities=7% Similarity=0.025 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCceeeee-cCCeEEEEeccCCCHHHHHHHHHHHhC
Q 001990 485 AHAIASAAYKIEMNLRVV-DSNTVTASFDETTTLEDVDKLFIVFAG 529 (985)
Q Consensus 485 ~~~l~~~L~~~Gi~~~~~-~~~~lris~~~~~t~edid~ll~~l~~ 529 (985)
++.+.++|...|+..... .....|+-+..+.++++.+++.+.|+.
T Consensus 23 A~~l~~~L~~~G~~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 23 AETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 889999999889865433 246689999999999999999988874
Done!