Query 001991
Match_columns 985
No_of_seqs 753 out of 3274
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 14:03:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001991.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001991hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4660 Protein Mei2, essentia 100.0 6.6E-71 1.4E-75 621.7 25.4 519 222-954 2-529 (549)
2 PF04059 RRM_2: RNA recognitio 100.0 1.6E-45 3.5E-50 341.2 10.8 97 810-906 1-97 (97)
3 TIGR01628 PABP-1234 polyadenyl 100.0 8.7E-36 1.9E-40 354.8 22.6 276 123-439 65-368 (562)
4 TIGR01628 PABP-1234 polyadenyl 100.0 5.7E-34 1.2E-38 339.2 20.4 294 148-485 2-328 (562)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.1E-32 4.5E-37 306.3 20.5 247 146-438 3-352 (352)
6 KOG0123 Polyadenylate-binding 100.0 4.7E-31 1E-35 298.4 12.3 271 122-439 59-353 (369)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.1E-29 2.5E-34 297.6 23.2 292 148-477 4-428 (481)
8 TIGR01648 hnRNP-R-Q heterogene 100.0 3.5E-29 7.5E-34 295.2 19.9 236 147-437 59-309 (578)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.3E-28 7.1E-33 285.3 22.9 287 122-435 62-480 (481)
10 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.7E-27 3.7E-32 266.8 21.1 159 274-436 2-172 (352)
11 KOG0117 Heterogeneous nuclear 99.9 5.4E-27 1.2E-31 259.6 18.8 242 146-439 83-335 (506)
12 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.8E-26 3.8E-31 271.2 21.7 267 147-434 176-501 (509)
13 TIGR01659 sex-lethal sex-letha 99.9 4.3E-26 9.4E-31 256.6 19.9 163 270-436 102-276 (346)
14 TIGR01622 SF-CC1 splicing fact 99.9 4.5E-26 9.8E-31 264.5 20.3 257 147-436 90-449 (457)
15 KOG0123 Polyadenylate-binding 99.9 4.3E-26 9.3E-31 258.2 17.7 282 148-486 3-314 (369)
16 KOG0145 RNA-binding protein EL 99.9 8.9E-26 1.9E-30 235.5 15.6 246 146-435 41-358 (360)
17 KOG0148 Apoptosis-promoting RN 99.9 6E-25 1.3E-29 231.0 16.3 161 275-436 62-239 (321)
18 TIGR01645 half-pint poly-U bin 99.9 2.5E-24 5.5E-29 254.7 19.3 165 272-436 104-285 (612)
19 TIGR01645 half-pint poly-U bin 99.9 2.1E-23 4.6E-28 246.9 20.8 169 145-348 106-282 (612)
20 TIGR01648 hnRNP-R-Q heterogene 99.9 2.8E-23 6E-28 245.5 21.5 191 274-478 57-268 (578)
21 KOG0127 Nucleolar protein fibr 99.9 6.5E-23 1.4E-27 231.3 19.9 269 147-439 6-382 (678)
22 TIGR01622 SF-CC1 splicing fact 99.9 8.4E-23 1.8E-27 237.2 19.1 163 271-434 85-265 (457)
23 KOG0117 Heterogeneous nuclear 99.9 3.4E-22 7.5E-27 221.8 18.3 189 273-475 81-289 (506)
24 TIGR01642 U2AF_lg U2 snRNP aux 99.9 4.7E-22 1E-26 233.9 18.6 164 270-435 170-375 (509)
25 KOG0145 RNA-binding protein EL 99.9 1.3E-21 2.7E-26 204.7 14.4 163 272-438 38-212 (360)
26 KOG0144 RNA-binding protein CU 99.9 7.1E-22 1.5E-26 218.3 12.1 165 272-439 31-210 (510)
27 KOG0144 RNA-binding protein CU 99.9 1.1E-21 2.4E-26 216.8 11.6 274 121-436 9-505 (510)
28 KOG0127 Nucleolar protein fibr 99.9 9E-21 2E-25 214.1 16.9 161 276-436 6-197 (678)
29 KOG0109 RNA-binding protein LA 99.8 6.6E-21 1.4E-25 202.4 9.4 148 276-435 3-150 (346)
30 KOG0131 Splicing factor 3b, su 99.8 3.6E-20 7.7E-25 186.2 11.4 163 273-438 7-180 (203)
31 KOG0148 Apoptosis-promoting RN 99.8 1.1E-18 2.3E-23 184.2 11.3 176 272-477 3-196 (321)
32 TIGR01659 sex-lethal sex-letha 99.8 1E-18 2.2E-23 197.1 9.6 161 144-350 105-275 (346)
33 KOG0124 Polypyrimidine tract-b 99.7 2.5E-18 5.4E-23 186.5 10.3 161 274-434 112-289 (544)
34 KOG0146 RNA-binding protein ET 99.7 1.4E-17 3E-22 175.2 9.4 166 274-439 18-369 (371)
35 KOG0110 RNA-binding protein (R 99.7 2.2E-17 4.9E-22 192.3 11.1 162 276-437 516-695 (725)
36 KOG0147 Transcriptional coacti 99.7 2E-17 4.2E-22 188.7 10.1 234 189-433 201-526 (549)
37 KOG4206 Spliceosomal protein s 99.7 1.7E-16 3.6E-21 165.3 15.7 163 271-433 5-220 (221)
38 KOG0124 Polypyrimidine tract-b 99.7 3E-16 6.4E-21 170.6 10.7 254 145-433 112-533 (544)
39 KOG4205 RNA-binding protein mu 99.6 1.2E-15 2.7E-20 168.7 10.0 163 274-438 5-179 (311)
40 KOG4212 RNA-binding protein hn 99.6 7.6E-13 1.6E-17 147.2 29.2 160 274-433 43-292 (608)
41 KOG0110 RNA-binding protein (R 99.6 5.7E-15 1.2E-19 172.5 13.2 208 271-479 381-647 (725)
42 KOG0147 Transcriptional coacti 99.6 8.1E-16 1.8E-20 175.7 5.5 164 270-434 174-357 (549)
43 KOG0105 Alternative splicing f 99.6 1.8E-14 4E-19 145.3 12.4 149 273-423 4-176 (241)
44 KOG0109 RNA-binding protein LA 99.6 2.4E-15 5.2E-20 160.4 5.0 149 147-352 3-152 (346)
45 KOG0106 Alternative splicing f 99.4 9.2E-14 2E-18 146.0 5.9 150 276-431 2-167 (216)
46 KOG4212 RNA-binding protein hn 99.4 3.6E-12 7.9E-17 141.8 16.7 73 360-432 536-608 (608)
47 KOG1548 Transcription elongati 99.4 3.1E-12 6.7E-17 139.8 15.6 165 271-435 130-352 (382)
48 PLN03134 glycine-rich RNA-bind 99.4 1.4E-12 3E-17 130.6 10.7 82 271-352 30-116 (144)
49 PLN03134 glycine-rich RNA-bind 99.4 1.8E-12 3.9E-17 129.7 10.4 78 359-436 33-115 (144)
50 KOG0131 Splicing factor 3b, su 99.4 3.1E-13 6.7E-18 136.6 3.9 164 145-354 8-181 (203)
51 KOG1190 Polypyrimidine tract-b 99.3 1.9E-11 4.1E-16 135.7 13.8 160 275-434 297-490 (492)
52 KOG1457 RNA binding protein (c 99.3 1.1E-11 2.5E-16 128.5 11.3 150 273-422 32-273 (284)
53 KOG1190 Polypyrimidine tract-b 99.3 5.1E-11 1.1E-15 132.4 16.2 163 274-436 149-374 (492)
54 KOG0120 Splicing factor U2AF, 99.3 2.6E-11 5.6E-16 140.7 14.2 164 271-434 285-491 (500)
55 PF00076 RRM_1: RNA recognitio 99.3 9.4E-12 2E-16 106.6 7.7 66 363-428 1-70 (70)
56 PF00076 RRM_1: RNA recognitio 99.3 1.4E-11 3E-16 105.6 7.6 66 278-343 1-70 (70)
57 COG0724 RNA-binding proteins ( 99.2 5.1E-11 1.1E-15 124.4 11.8 121 275-395 115-260 (306)
58 KOG4205 RNA-binding protein mu 99.2 1.1E-11 2.4E-16 137.5 7.0 204 145-388 5-215 (311)
59 KOG4211 Splicing factor hnRNP- 99.2 5.9E-11 1.3E-15 134.9 12.3 163 274-439 9-186 (510)
60 KOG0107 Alternative splicing f 99.2 2.5E-11 5.3E-16 122.4 7.2 76 360-435 10-85 (195)
61 KOG0107 Alternative splicing f 99.1 5.7E-11 1.2E-15 119.8 5.8 78 274-351 9-86 (195)
62 PLN03120 nucleic acid binding 99.1 2.6E-10 5.6E-15 123.1 10.0 74 360-434 4-79 (260)
63 KOG0125 Ataxin 2-binding prote 99.1 1.6E-10 3.4E-15 125.9 8.2 99 333-435 73-174 (376)
64 KOG0125 Ataxin 2-binding prote 99.1 2.5E-10 5.5E-15 124.2 9.4 85 269-353 90-177 (376)
65 PF14259 RRM_6: RNA recognitio 99.1 3.6E-10 7.9E-15 98.0 8.4 66 363-428 1-70 (70)
66 KOG1456 Heterogeneous nuclear 99.1 8.5E-10 1.9E-14 121.5 13.1 167 269-436 25-200 (494)
67 smart00362 RRM_2 RNA recogniti 99.1 5.7E-10 1.2E-14 94.0 9.2 69 362-430 1-72 (72)
68 KOG0114 Predicted RNA-binding 99.1 4.1E-10 8.8E-15 105.0 8.1 81 271-351 14-96 (124)
69 PLN03120 nucleic acid binding 99.0 4.5E-10 9.7E-15 121.3 9.0 75 275-350 4-80 (260)
70 PF14259 RRM_6: RNA recognitio 99.0 5.6E-10 1.2E-14 96.8 8.0 66 278-343 1-70 (70)
71 PF13893 RRM_5: RNA recognitio 99.0 8.8E-10 1.9E-14 92.2 8.6 56 377-432 1-56 (56)
72 KOG0114 Predicted RNA-binding 99.0 1.2E-09 2.6E-14 101.9 10.0 83 359-441 17-101 (124)
73 KOG1456 Heterogeneous nuclear 99.0 5.4E-09 1.2E-13 115.3 16.7 164 271-434 116-362 (494)
74 KOG0121 Nuclear cap-binding pr 99.0 3.2E-10 7E-15 109.2 5.7 78 271-348 32-114 (153)
75 KOG0122 Translation initiation 99.0 6.5E-10 1.4E-14 117.2 8.2 77 359-435 188-269 (270)
76 PLN03213 repressor of silencin 99.0 1E-09 2.2E-14 124.0 9.9 90 358-447 8-100 (759)
77 KOG4660 Protein Mei2, essentia 99.0 4.3E-10 9.3E-15 129.7 5.9 162 271-435 71-250 (549)
78 KOG0122 Translation initiation 99.0 1E-09 2.2E-14 115.8 7.9 79 272-350 186-269 (270)
79 cd00590 RRM RRM (RNA recogniti 98.9 4.6E-09 9.9E-14 88.9 9.6 70 362-431 1-74 (74)
80 KOG0121 Nuclear cap-binding pr 98.9 1.4E-09 3E-14 105.0 6.8 76 359-434 35-115 (153)
81 smart00362 RRM_2 RNA recogniti 98.9 2.5E-09 5.3E-14 90.1 7.4 68 277-344 1-71 (72)
82 KOG0149 Predicted RNA-binding 98.9 1.6E-09 3.4E-14 114.1 6.9 77 271-348 8-89 (247)
83 smart00360 RRM RNA recognition 98.9 4E-09 8.7E-14 88.4 8.1 66 365-430 1-71 (71)
84 PLN03121 nucleic acid binding 98.9 3.9E-09 8.5E-14 112.6 9.8 74 360-434 5-80 (243)
85 KOG4207 Predicted splicing fac 98.9 1.3E-09 2.9E-14 112.4 5.9 80 269-348 7-91 (256)
86 KOG4207 Predicted splicing fac 98.9 1.4E-09 3E-14 112.2 5.9 76 360-435 13-93 (256)
87 PLN03213 repressor of silencin 98.9 2.3E-09 4.9E-14 121.3 8.0 119 272-392 7-135 (759)
88 COG0724 RNA-binding proteins ( 98.9 8.1E-09 1.8E-13 107.9 11.2 75 360-434 115-194 (306)
89 KOG0113 U1 small nuclear ribon 98.9 4.7E-09 1E-13 113.4 8.2 78 271-348 97-179 (335)
90 PLN03121 nucleic acid binding 98.9 5.3E-09 1.1E-13 111.6 8.5 74 274-348 4-79 (243)
91 KOG0105 Alternative splicing f 98.8 3.5E-09 7.6E-14 107.6 6.2 78 358-435 4-83 (241)
92 smart00360 RRM RNA recognition 98.8 7.2E-09 1.6E-13 86.8 6.6 65 280-344 1-70 (71)
93 KOG0111 Cyclophilin-type pepti 98.8 1.8E-09 3.8E-14 112.1 3.2 80 273-352 8-92 (298)
94 KOG0113 U1 small nuclear ribon 98.8 1.4E-08 3.1E-13 109.8 10.0 90 347-436 88-182 (335)
95 cd00590 RRM RRM (RNA recogniti 98.8 1.4E-08 2.9E-13 86.0 7.6 70 277-346 1-74 (74)
96 KOG0111 Cyclophilin-type pepti 98.8 5.1E-09 1.1E-13 108.8 3.9 80 359-438 9-93 (298)
97 PF13893 RRM_5: RNA recognitio 98.7 1.4E-08 3.1E-13 84.9 5.8 56 292-347 1-56 (56)
98 KOG0130 RNA-binding protein RB 98.7 1.4E-08 2.9E-13 98.9 6.2 81 356-436 68-153 (170)
99 KOG0149 Predicted RNA-binding 98.7 1.5E-08 3.2E-13 106.9 6.4 79 357-436 9-92 (247)
100 KOG0129 Predicted RNA-binding 98.7 1.6E-07 3.4E-12 108.2 14.2 142 271-415 255-431 (520)
101 KOG0126 Predicted RNA-binding 98.7 3.3E-09 7E-14 107.7 -0.4 75 273-347 33-112 (219)
102 KOG0108 mRNA cleavage and poly 98.7 2.7E-08 5.9E-13 115.2 6.8 77 276-352 19-100 (435)
103 KOG0108 mRNA cleavage and poly 98.7 6.3E-08 1.4E-12 112.3 9.2 79 361-439 19-102 (435)
104 KOG0130 RNA-binding protein RB 98.6 3.6E-08 7.8E-13 96.0 5.5 81 271-351 68-153 (170)
105 smart00361 RRM_1 RNA recogniti 98.6 1E-07 2.2E-12 83.7 7.5 56 374-429 2-69 (70)
106 KOG0120 Splicing factor U2AF, 98.6 7.2E-08 1.6E-12 112.5 8.1 164 271-436 171-370 (500)
107 KOG0112 Large RNA-binding prot 98.6 2.5E-08 5.5E-13 120.0 4.4 159 271-436 368-532 (975)
108 KOG0132 RNA polymerase II C-te 98.6 7.4E-08 1.6E-12 114.5 6.9 76 275-351 421-496 (894)
109 KOG0126 Predicted RNA-binding 98.5 9.9E-09 2.1E-13 104.3 -1.0 75 359-433 34-113 (219)
110 KOG4206 Spliceosomal protein s 98.5 1.8E-07 3.9E-12 98.5 7.6 75 362-436 11-91 (221)
111 KOG0132 RNA polymerase II C-te 98.5 2.4E-07 5.2E-12 110.2 8.4 81 358-439 419-499 (894)
112 KOG0146 RNA-binding protein ET 98.5 2.2E-07 4.8E-12 99.1 6.4 81 272-352 282-367 (371)
113 KOG0106 Alternative splicing f 98.4 1.5E-07 3.3E-12 99.6 4.7 162 147-347 2-168 (216)
114 KOG4454 RNA binding protein (R 98.4 5.3E-08 1.1E-12 101.5 1.1 131 273-417 7-145 (267)
115 smart00361 RRM_1 RNA recogniti 98.4 3.6E-07 7.9E-12 80.3 6.1 56 289-344 2-69 (70)
116 KOG0153 Predicted RNA-binding 98.4 5.2E-07 1.1E-11 99.6 7.9 79 355-434 223-302 (377)
117 KOG0153 Predicted RNA-binding 98.4 4.1E-07 9E-12 100.4 7.1 83 267-350 220-303 (377)
118 KOG0415 Predicted peptidyl pro 98.3 6.4E-07 1.4E-11 98.7 5.9 79 357-435 236-319 (479)
119 KOG4210 Nuclear localization s 98.3 6.7E-07 1.4E-11 99.2 5.9 162 273-436 86-265 (285)
120 KOG1365 RNA-binding protein Fu 98.3 4E-06 8.6E-11 93.5 11.1 162 274-436 160-363 (508)
121 KOG4211 Splicing factor hnRNP- 98.2 1.5E-05 3.2E-10 91.8 14.9 151 273-425 101-348 (510)
122 KOG0128 RNA-binding protein SA 98.2 1.7E-07 3.8E-12 112.7 -1.2 139 275-434 667-814 (881)
123 KOG0415 Predicted peptidyl pro 98.2 1.2E-06 2.6E-11 96.6 5.1 81 271-351 235-320 (479)
124 KOG4208 Nucleolar RNA-binding 98.2 4.1E-06 8.8E-11 87.3 7.2 81 270-350 44-130 (214)
125 KOG0226 RNA-binding proteins [ 98.1 1.8E-06 3.9E-11 92.1 4.1 160 277-436 98-271 (290)
126 KOG4661 Hsp27-ERE-TATA-binding 98.0 6.3E-06 1.4E-10 95.2 6.6 75 360-434 405-484 (940)
127 PF03467 Smg4_UPF3: Smg-4/UPF3 98.0 5.6E-06 1.2E-10 85.9 5.1 91 808-898 5-100 (176)
128 KOG0151 Predicted splicing reg 98.0 1.2E-05 2.7E-10 95.2 7.8 85 266-350 165-257 (877)
129 KOG4208 Nucleolar RNA-binding 98.0 1.9E-05 4.2E-10 82.4 8.0 79 357-435 46-130 (214)
130 KOG2193 IGF-II mRNA-binding pr 97.9 1.8E-06 3.9E-11 97.0 -1.1 149 276-433 2-155 (584)
131 KOG4661 Hsp27-ERE-TATA-binding 97.9 1.7E-05 3.8E-10 91.7 6.7 76 273-348 403-483 (940)
132 KOG0151 Predicted splicing reg 97.9 2E-05 4.2E-10 93.6 6.5 78 357-434 171-256 (877)
133 KOG0533 RRM motif-containing p 97.8 4.3E-05 9.3E-10 82.8 7.0 80 271-350 79-162 (243)
134 KOG4454 RNA binding protein (R 97.7 3.6E-05 7.8E-10 80.9 5.1 76 359-434 8-86 (267)
135 KOG1457 RNA binding protein (c 97.7 0.00011 2.5E-09 77.4 8.1 78 359-436 33-119 (284)
136 PF11608 Limkain-b1: Limkain b 97.7 0.00019 4E-09 65.6 8.0 69 361-434 3-76 (90)
137 KOG0116 RasGAP SH3 binding pro 97.6 4.8E-05 1E-09 88.3 5.0 74 274-348 287-365 (419)
138 KOG0533 RRM motif-containing p 97.6 0.00016 3.4E-09 78.5 8.4 78 359-436 82-163 (243)
139 KOG0116 RasGAP SH3 binding pro 97.6 7.8E-05 1.7E-09 86.5 6.3 74 361-435 289-367 (419)
140 KOG1548 Transcription elongati 97.6 0.00012 2.5E-09 81.4 7.0 74 360-433 134-219 (382)
141 KOG1365 RNA-binding protein Fu 97.5 0.0003 6.5E-09 78.9 8.3 159 273-433 58-241 (508)
142 KOG4209 Splicing factor RNPS1, 97.4 0.00014 3E-09 78.7 5.0 79 356-435 97-180 (231)
143 PF04059 RRM_2: RNA recognitio 97.4 0.00058 1.3E-08 64.4 8.5 81 361-441 2-93 (97)
144 KOG4676 Splicing factor, argin 97.4 8.6E-05 1.9E-09 83.4 2.2 157 276-434 8-225 (479)
145 KOG4209 Splicing factor RNPS1, 97.3 0.00023 5.1E-09 77.0 5.5 78 270-348 96-178 (231)
146 KOG4210 Nuclear localization s 97.3 0.00068 1.5E-08 75.6 8.6 78 274-352 183-266 (285)
147 KOG4307 RNA binding protein RB 97.3 0.00045 9.7E-09 82.2 6.8 166 270-436 306-515 (944)
148 PF11608 Limkain-b1: Limkain b 97.2 0.0011 2.3E-08 60.8 6.9 69 276-349 3-76 (90)
149 KOG0226 RNA-binding proteins [ 97.2 0.0004 8.6E-09 74.7 4.7 77 272-348 187-268 (290)
150 KOG0129 Predicted RNA-binding 97.2 0.0018 3.8E-08 75.7 10.1 159 145-331 258-432 (520)
151 PF08777 RRM_3: RNA binding mo 97.1 0.001 2.2E-08 63.7 6.2 78 361-439 2-84 (105)
152 COG5175 MOT2 Transcriptional r 96.9 0.00083 1.8E-08 74.4 4.5 86 275-369 114-213 (480)
153 KOG0128 RNA-binding protein SA 96.9 0.0012 2.6E-08 80.6 6.0 75 275-349 736-814 (881)
154 COG5175 MOT2 Transcriptional r 96.8 0.0043 9.3E-08 68.9 8.5 94 359-454 113-221 (480)
155 KOG1855 Predicted RNA-binding 96.5 0.0029 6.4E-08 72.3 5.4 73 349-421 220-310 (484)
156 PF08777 RRM_3: RNA binding mo 96.4 0.0064 1.4E-07 58.2 6.3 59 276-335 2-60 (105)
157 PF05172 Nup35_RRM: Nup53/35/4 96.4 0.0082 1.8E-07 57.1 6.7 73 359-433 5-90 (100)
158 PF14605 Nup35_RRM_2: Nup53/35 96.2 0.011 2.3E-07 49.9 5.5 52 361-414 2-53 (53)
159 PF14605 Nup35_RRM_2: Nup53/35 96.1 0.0099 2.1E-07 50.0 5.1 52 276-329 2-53 (53)
160 KOG1855 Predicted RNA-binding 96.1 0.005 1.1E-07 70.5 4.2 78 267-344 223-318 (484)
161 KOG3152 TBP-binding protein, a 96.0 0.0041 8.9E-08 67.2 2.9 68 359-426 73-157 (278)
162 KOG0115 RNA-binding protein p5 95.8 0.011 2.3E-07 64.1 5.0 89 323-422 5-97 (275)
163 KOG1995 Conserved Zn-finger pr 95.8 0.0082 1.8E-07 67.7 4.1 78 359-436 65-155 (351)
164 KOG1995 Conserved Zn-finger pr 95.8 0.0087 1.9E-07 67.5 4.2 79 272-350 63-154 (351)
165 KOG0112 Large RNA-binding prot 95.8 0.011 2.4E-07 72.9 5.4 81 271-352 451-533 (975)
166 KOG1295 Nonsense-mediated deca 95.7 0.0057 1.2E-07 69.5 2.2 74 809-883 6-81 (376)
167 KOG2202 U2 snRNP splicing fact 95.5 0.0069 1.5E-07 65.6 2.1 62 375-436 83-149 (260)
168 KOG1996 mRNA splicing factor [ 95.5 0.03 6.4E-07 61.6 6.7 62 374-435 300-367 (378)
169 KOG3152 TBP-binding protein, a 95.4 0.0092 2E-07 64.6 2.6 69 273-341 72-157 (278)
170 PF08952 DUF1866: Domain of un 95.0 0.069 1.5E-06 54.0 7.2 77 357-437 24-109 (146)
171 KOG4307 RNA binding protein RB 94.8 0.056 1.2E-06 65.2 7.0 71 361-431 868-943 (944)
172 PF05172 Nup35_RRM: Nup53/35/4 94.6 0.062 1.4E-06 51.2 5.4 72 274-347 5-89 (100)
173 KOG2314 Translation initiation 94.4 0.11 2.4E-06 61.6 7.9 75 358-432 56-141 (698)
174 PF07576 BRAP2: BRCA1-associat 94.1 0.31 6.7E-06 47.3 9.0 85 809-896 11-96 (110)
175 KOG2314 Translation initiation 94.0 0.11 2.4E-06 61.6 7.0 66 273-339 56-132 (698)
176 KOG4676 Splicing factor, argin 93.9 0.055 1.2E-06 61.6 4.1 72 361-433 8-87 (479)
177 KOG2193 IGF-II mRNA-binding pr 93.8 0.048 1E-06 62.5 3.4 76 361-439 2-80 (584)
178 KOG0804 Cytoplasmic Zn-finger 93.4 0.25 5.5E-06 57.4 8.4 81 810-894 74-154 (493)
179 KOG4849 mRNA cleavage factor I 93.0 0.074 1.6E-06 59.7 3.2 73 272-344 77-156 (498)
180 KOG2202 U2 snRNP splicing fact 92.8 0.042 9.1E-07 59.7 1.0 57 291-347 84-145 (260)
181 KOG2416 Acinus (induces apopto 91.8 0.11 2.5E-06 61.8 3.0 77 270-347 439-519 (718)
182 PF15023 DUF4523: Protein of u 91.6 0.62 1.4E-05 47.0 7.4 75 357-434 83-161 (166)
183 KOG2416 Acinus (induces apopto 91.2 0.17 3.7E-06 60.4 3.6 79 357-436 441-523 (718)
184 PF08952 DUF1866: Domain of un 90.9 0.39 8.4E-06 48.7 5.3 73 273-349 25-106 (146)
185 KOG2068 MOT2 transcription fac 90.0 0.19 4.1E-06 56.7 2.5 95 359-454 76-181 (327)
186 PF15023 DUF4523: Protein of u 90.0 0.81 1.8E-05 46.2 6.5 76 270-348 81-160 (166)
187 PF08675 RNA_bind: RNA binding 89.8 1.2 2.5E-05 41.4 6.8 56 275-334 9-64 (87)
188 KOG1996 mRNA splicing factor [ 88.7 0.61 1.3E-05 51.7 5.1 75 274-348 280-365 (378)
189 KOG2135 Proteins containing th 88.6 0.47 1E-05 55.6 4.3 72 363-436 375-447 (526)
190 KOG2591 c-Mpl binding protein, 88.5 0.75 1.6E-05 54.8 5.9 74 270-345 170-247 (684)
191 KOG4285 Mitotic phosphoprotein 87.4 2.1 4.6E-05 47.9 8.2 73 360-435 197-270 (350)
192 KOG2591 c-Mpl binding protein, 87.1 1.1 2.5E-05 53.4 6.3 98 321-430 146-247 (684)
193 PF04847 Calcipressin: Calcipr 86.8 1.3 2.7E-05 46.9 6.0 63 373-436 8-72 (184)
194 KOG2068 MOT2 transcription fac 86.4 0.44 9.5E-06 53.9 2.4 76 275-350 77-163 (327)
195 PF03467 Smg4_UPF3: Smg-4/UPF3 86.1 1.2 2.6E-05 46.6 5.3 68 273-340 5-83 (176)
196 KOG4849 mRNA cleavage factor I 85.8 0.84 1.8E-05 51.6 4.2 77 360-436 80-163 (498)
197 PF10309 DUF2414: Protein of u 85.7 2.5 5.4E-05 37.1 6.2 55 360-417 5-62 (62)
198 PF10309 DUF2414: Protein of u 82.5 4.6 9.9E-05 35.5 6.4 54 275-332 5-62 (62)
199 KOG4285 Mitotic phosphoprotein 82.3 2.4 5.3E-05 47.4 5.8 64 275-341 197-260 (350)
200 KOG4574 RNA-binding protein (c 81.9 1 2.2E-05 56.1 3.0 76 360-436 298-375 (1007)
201 PF08675 RNA_bind: RNA binding 79.6 7.9 0.00017 36.1 7.2 54 362-419 11-64 (87)
202 KOG0115 RNA-binding protein p5 76.6 2.5 5.4E-05 46.4 3.7 59 276-334 32-94 (275)
203 PF03880 DbpA: DbpA RNA bindin 75.1 6.2 0.00013 35.3 5.3 59 370-432 11-74 (74)
204 PF04847 Calcipressin: Calcipr 73.7 3.4 7.4E-05 43.7 3.7 62 288-350 8-71 (184)
205 KOG2253 U1 snRNP complex, subu 72.5 3.1 6.7E-05 50.9 3.4 71 357-431 37-107 (668)
206 PF07292 NID: Nmi/IFP 35 domai 72.1 3.1 6.7E-05 39.0 2.6 67 315-381 1-73 (88)
207 KOG2135 Proteins containing th 71.6 1.7 3.7E-05 51.1 1.0 78 272-351 369-447 (526)
208 PF07576 BRAP2: BRCA1-associat 71.2 24 0.00051 34.5 8.5 62 362-423 15-80 (110)
209 PF11767 SET_assoc: Histone ly 68.9 18 0.00039 32.2 6.6 55 371-429 11-65 (66)
210 PF14111 DUF4283: Domain of un 65.5 11 0.00024 37.5 5.3 102 290-395 36-140 (153)
211 PF10567 Nab6_mRNP_bdg: RNA-re 61.6 65 0.0014 36.5 10.5 146 272-418 12-212 (309)
212 PF11767 SET_assoc: Histone ly 59.6 24 0.00052 31.4 5.6 55 286-344 11-65 (66)
213 KOG2253 U1 snRNP complex, subu 56.9 7.7 0.00017 47.6 2.8 72 271-346 36-107 (668)
214 KOG4574 RNA-binding protein (c 54.8 5.7 0.00012 49.8 1.3 73 277-350 300-374 (1007)
215 KOG0804 Cytoplasmic Zn-finger 50.6 33 0.00071 40.7 6.3 64 360-423 74-141 (493)
216 KOG2318 Uncharacterized conser 44.3 81 0.0018 38.7 8.4 129 270-431 169-304 (650)
217 PF03880 DbpA: DbpA RNA bindin 41.9 54 0.0012 29.3 5.1 58 286-347 12-74 (74)
218 KOG4019 Calcineurin-mediated s 41.1 29 0.00062 36.7 3.6 74 362-436 12-91 (193)
219 PRK14548 50S ribosomal protein 38.4 68 0.0015 29.9 5.3 55 362-416 22-80 (84)
220 TIGR03636 L23_arch archaeal ri 36.7 78 0.0017 29.0 5.3 54 362-415 15-72 (77)
221 KOG2891 Surface glycoprotein [ 34.4 13 0.00029 41.2 0.0 63 275-337 149-247 (445)
222 KOG4483 Uncharacterized conser 34.1 88 0.0019 36.8 6.3 54 360-415 391-445 (528)
223 KOG4019 Calcineurin-mediated s 21.3 60 0.0013 34.5 2.0 75 275-350 10-90 (193)
No 1
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.6e-71 Score=621.73 Aligned_cols=519 Identities=50% Similarity=0.720 Sum_probs=368.4
Q ss_pred hhhHHHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCc
Q 001991 222 EDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGD 301 (985)
Q Consensus 222 ee~~ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~ 301 (985)
++++.|..++||+|+++....+....+ ....+.....+++..+ +++ || .+|..+|++|+
T Consensus 2 ~d~~lf~~~G~~el~~~~~~~~~~~~~--------~~n~~~~~~~~~P~~~--s~~-~~---------~~l~a~f~~~~- 60 (549)
T KOG4660|consen 2 EDCDLFSSGGGMELDADSFDNLSVRNS--------DRNSAGFVFPEHPPGE--SRT-FV---------SELSALFEPFN- 60 (549)
T ss_pred CccccccCCCCCCcccccccchhhccc--------ccCCCccccCCCCCCC--CCC-Ch---------hhHHhhhhccC-
Confidence 456899999999999765433222111 1233345556777777 566 77 78888898881
Q ss_pred EEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCcccccccceeeecCCCCCCHHHHHHHh
Q 001991 302 IRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIF 381 (985)
Q Consensus 302 I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelF 381 (985)
+.+ +++.+.+++.++++|+|.|||.+|++++|+++|
T Consensus 61 ---------------------------------~p~-----------~~~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f 96 (549)
T KOG4660|consen 61 ---------------------------------KPL-----------RPDNPSEKDMNQGTLVVFNLPRSVSNDTLLRIF 96 (549)
T ss_pred ---------------------------------CCC-----------CcCCCCcccCccceEEEEecCCcCCHHHHHHHH
Confidence 111 114556678899999999999999999999999
Q ss_pred hccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcchhhhhhhhhhhccCCCcc----cCC
Q 001991 382 GIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLC----QIP 457 (985)
Q Consensus 382 s~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~~Rrl~qq~eq~q~e~nLy----kNl 457 (985)
+.||+|++|+..+..++.+||+|+|+.+|++|+++||+.+|.|+.|+ ++...++.+.- +....++ ..+
T Consensus 97 ~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k----~~~~~~~~~~~----~~~~~~~~~~~~p~ 168 (549)
T KOG4660|consen 97 GAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK----RPGGARRAMGL----QSGTSFLNHFGSPL 168 (549)
T ss_pred HhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc----CCCcccccchh----cccchhhhhccchh
Confidence 99999999999999999999999999999999999999999999999 66666552211 1112222 333
Q ss_pred CCCCCccccccccceEEEecCCCCcceeccCCCCCcccccccCCCCCCCCCCCCCCccCcCCccccccCCCCcccccccC
Q 001991 458 FDDLSSGQMVSSGVITSTCMDNGSIQVLHSATRSPAIALTESHQTSSVPNGLPSLARVGSIGKQFGHYEPNLSLDEMKFG 537 (985)
Q Consensus 458 p~svt~e~L~~fG~I~S~~~enG~srgf~s~~~~P~~~~~~~~~s~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (985)
.+++++.+- ..+.|. +|.|.. +++++ ++..+++.-.-+
T Consensus 169 a~s~pgg~~--------------~~~~~g-----~l~P~~----s~~~~-------------------~~~~~~~~~~~~ 206 (549)
T KOG4660|consen 169 ANSPPGGWP--------------RGQLFG-----MLSPTR----SSILL-------------------EHISSVDGSSPG 206 (549)
T ss_pred hcCCCCCCc--------------CCccee-----eeccch----hhhhh-------------------hcchhccCcccc
Confidence 444433321 111111 122211 11111 111111111011
Q ss_pred CC-CCCCCCCCcccccccccCCCCCCCCccccccccccCCcccCCCCCCCccccCCCCCCCCCCCCccCCCCCCCccCCC
Q 001991 538 NQ-HPSFHPHSLPEYHDSLANGLPYNSPSTIADIASSVGTKIKDGLDSRHIRGVSSNGHLMEPTGGVFGSPRNGSYSLHG 616 (985)
Q Consensus 538 ~~-~~~~~~~s~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g 616 (985)
+ .+-++ | .+...++.+.+|..+ .. . + |.++-...++. +++|
T Consensus 207 -~~~~~~~-h---q~~~~~~~~~s~a~~----~~------------------~-~--G~~~s~~~~v~--------t~S~ 248 (549)
T KOG4660|consen 207 -RETPLLN-H---QRFVEFADNRSYAFS----EP------------------R-G--GFLISNSSGVI--------TFSG 248 (549)
T ss_pred -ccccchh-h---hhhhhhccccchhhc----cc------------------C-C--ceecCCCCceE--------EecC
Confidence 1 11221 1 223334444433211 00 0 0 33221112333 3333
Q ss_pred CCccCCCCCCCCCCCCCCCcCCCCCCccCCcccCCCCCCCCCCCCCcccccCCCC-CcccccCCCCCCCCccccccccCC
Q 001991 617 NPYVWNNSNSHQQHPSSPMVWPNSPSFLNGLHANRVAHMPGFPRVPPLMLNATSP-AHHHIGSAPAVNPSLWDRQHAYAG 695 (985)
Q Consensus 617 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gsap~~~~~~~~~~~~~~~ 695 (985)
+ .++| |++.+++..| +.+.. .|||||+||+.
T Consensus 249 ~----------------~g~~-------n~~~~~r~~~------------~~~~~~~~~hi~~~Ps~------------- 280 (549)
T KOG4660|consen 249 P----------------GGVW-------NPFPSRRQRQ------------NSSSSHYEHHIGSAPSM------------- 280 (549)
T ss_pred C----------------Cccc-------CCcccccccc------------ccCcccccCccCCCccc-------------
Confidence 2 1344 3333332111 12212 38999999982
Q ss_pred CCCCCcccccCCCCCCCCCCCCCCcccccc--cccccccCCCCccCcC-CCCCCCCcccccCCCCCCCCCccccccccch
Q 001991 696 ESPETSNFHLGSLGSGGFLGRSPSHHVDIA--SQNILSHVGGNCMDMT-KNVGMRSPQQICHLFPGRNPMMSMQTSFDSS 772 (985)
Q Consensus 696 ~~~~~~~~~~g~~g~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~ 772 (985)
.|+..-++++|.+..+.+.|... ....+.+..|++++.. +++++.+.++..+.|.++.-+. ...+..
T Consensus 281 -------~~l~~~~~~~f~~~s~~~~~~~~~~~n~g~~~~t~~~~e~~s~n~~~e~~~rv~~~f~~~~~~~---~~~~~~ 350 (549)
T KOG4660|consen 281 -------HHLLSRISVGFNGGSGALEMNSNGQANQGFLTKTGNVTEFNSKNVGMESSPRVPKNFEGRRSYT---SQNDYP 350 (549)
T ss_pred -------ccccccCccccCCCCCCccccccccCCCCccccCcccccccCCCccccccCCCCcccccccccc---cccccc
Confidence 24445566777766665555444 2345667889998888 9999999999999999887443 345555
Q ss_pred hHHhhhccccccCCCCCcccccccccchhhhhcCCCCceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEecccccccc
Q 001991 773 NERMRNLSYRRNESNSNHADKKQYELDIDRILRGDDSRTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFKNKC 852 (985)
Q Consensus 773 ~~~~r~~~~~~~~~~~~~~~~~~~~~d~~~i~~g~d~rTTvMirNIPnk~t~~~L~~~id~~~~g~yDF~YlpiDf~~~~ 852 (985)
.+..+++.-||.+.+....+++++.+|+.+|++|+|.|||+||||||||||++||++. ||.++|+|||+||||||+|+|
T Consensus 351 ~~~~~~~~~~Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~-d~~~~gtYDFlYLPiDF~nkc 429 (549)
T KOG4660|consen 351 VELILNYRDRRTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAA-DEKNKGTYDFLYLPIDFKNKC 429 (549)
T ss_pred cccccccccchhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhh-hccccCccceEEecccccccc
Confidence 6644445558888777777899999999999999999999999999999999999999 999999999999999999999
Q ss_pred eeEEEEEecCCchhhHHHHHHhcCCcccCCCCccEEEEEeecccCHHHHHHHhccCccccCCCCccceEEecCCCCCCCC
Q 001991 853 NVGYAFINMIDPRQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDP 932 (985)
Q Consensus 853 N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~K~~~v~yA~iQG~~ali~hf~~s~~~~~~~~~rP~~f~~~g~~~g~~ 932 (985)
|||||||||++|++|++||++|||++|++|+|+|||+|+|||||||++|++|||||++|||++.|+|++|++ |+.|.+
T Consensus 430 NvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk~~Li~hFqnS~lm~E~e~y~Pvvf~p--p~dg~~ 507 (549)
T KOG4660|consen 430 NVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGKEALIEHFQNSSLMCEDEAYRPVVFSP--PEDGRE 507 (549)
T ss_pred ccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhchHHHHHHhhcccccccchhcCceEecC--cccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997 899999
Q ss_pred CCCCCCCCccCCCCCCCccCcc
Q 001991 933 EPFPMGTNIRSRLGKPRINGNE 954 (985)
Q Consensus 933 ~~fp~~~~~~~~~~~~r~~~~~ 954 (985)
+++|...+++.+.+.++.....
T Consensus 508 ~~~p~~~~~~a~~~~s~~~~~~ 529 (549)
T KOG4660|consen 508 EPEPVKLNQDAGAGHSTNASLK 529 (549)
T ss_pred cCccccccccCCCCcccchhhh
Confidence 9999999999887777766655
No 2
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=100.00 E-value=1.6e-45 Score=341.22 Aligned_cols=97 Identities=65% Similarity=1.188 Sum_probs=96.3
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEecccccccceeEEEEEecCCchhhHHHHHHhcCCcccCCCCccEEE
Q 001991 810 RTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFKNKCNVGYAFINMIDPRQIIPFHQAFNGKKWEKFNSEKVAS 889 (985)
Q Consensus 810 rTTvMirNIPnk~t~~~L~~~id~~~~g~yDF~YlpiDf~~~~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~K~~~ 889 (985)
|||||||||||||||+||+++||+.|+|+||||||||||+++||+|||||||+++++|.+|++.|+|++|+.++|+|||+
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccCHHHHHHHhc
Q 001991 890 LAYARIQGKAALIAHFQ 906 (985)
Q Consensus 890 v~yA~iQG~~ali~hf~ 906 (985)
|+||||||++|||+|||
T Consensus 81 i~yAriQG~~alv~~f~ 97 (97)
T PF04059_consen 81 ISYARIQGKDALVEHFR 97 (97)
T ss_pred EehhHhhCHHHHHHhhC
Confidence 99999999999999996
No 3
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=8.7e-36 Score=354.78 Aligned_cols=276 Identities=22% Similarity=0.348 Sum_probs=232.6
Q ss_pred ccCCCCeeeecccCCCCCcccCCCcccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCCh-hh
Q 001991 123 NSLSGNRSGINGIQSESSLFSSSLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDE-DD 200 (985)
Q Consensus 123 ~~~~g~~i~im~s~rd~sl~sSsl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpde-dD 200 (985)
..++|++|+|+|+++|++++++..++|||+||+. ++++.|++. | +.+|+|+..+ ..
T Consensus 65 ~~i~gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~--------------F--------~~~G~i~~~~i~~ 122 (562)
T TIGR01628 65 KRLGGKPIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDT--------------F--------SKFGNILSCKVAT 122 (562)
T ss_pred CEECCeeEEeecccccccccccCCCceEEcCCCccCCHHHHHHH--------------H--------HhcCCcceeEeee
Confidence 4589999999999999999999999999999998 999999998 8 6677777621 00
Q ss_pred hhccCCCCeeeeecCCChhhhhhhHHHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEE
Q 001991 201 LFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFV 280 (985)
Q Consensus 201 L~sG~SkGfGFV~ff~t~Edaee~~ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfV 280 (985)
-.+|.++|||||+ |++.++++ +|+..++|+.+. +..+.++.......+ + .......++|||
T Consensus 123 ~~~g~skg~afV~-F~~~e~A~--~Ai~~lng~~~~-~~~i~v~~~~~~~~~--------------~-~~~~~~~~~l~V 183 (562)
T TIGR01628 123 DENGKSRGYGFVH-FEKEESAK--AAIQKVNGMLLN-DKEVYVGRFIKKHER--------------E-AAPLKKFTNLYV 183 (562)
T ss_pred cCCCCcccEEEEE-ECCHHHHH--HHHHHhcccEec-CceEEEecccccccc--------------c-cccccCCCeEEE
Confidence 1267899999999 66888888 899999999998 555555443321110 0 113345689999
Q ss_pred ecCCCCCCHHHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCcccc----cccccccccCCCCC
Q 001991 281 RNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLR----RRKLDIHYSIPKDN 352 (985)
Q Consensus 281 gNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~----Gr~L~V~~a~pk~~ 352 (985)
+|||.++|+++|+++|+.||+|.++++ +++++|||||+|.+.++|.+|++.|++..+. |+.+.|.++..+.+
T Consensus 184 ~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~e 263 (562)
T TIGR01628 184 KNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAE 263 (562)
T ss_pred eCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhh
Confidence 999999999999999999999999876 4678999999999999999999999999999 99999998877654
Q ss_pred CCc--------------ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHH
Q 001991 353 PSE--------------KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETAL 414 (985)
Q Consensus 353 ~~~--------------~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI 414 (985)
+.. ......+|||+||+..+|+++|+++|++||.|++|+++.+ ++|||||+|.+.++|.+|+
T Consensus 264 r~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~ 343 (562)
T TIGR01628 264 REAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAV 343 (562)
T ss_pred hHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHH
Confidence 310 1223458999999999999999999999999999998654 5799999999999999999
Q ss_pred HHhCCceeCCceEEEEeccCcchhh
Q 001991 415 RTLNRSDVAGKQIKLEASRPGGARR 439 (985)
Q Consensus 415 ~~LNG~~I~Gr~IkV~~A~~k~~Rr 439 (985)
..|||+.|+|++|+|.++.+++.|+
T Consensus 344 ~~~~g~~~~gk~l~V~~a~~k~~~~ 368 (562)
T TIGR01628 344 TEMHGRMLGGKPLYVALAQRKEQRR 368 (562)
T ss_pred HHhcCCeeCCceeEEEeccCcHHHH
Confidence 9999999999999999999988776
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=5.7e-34 Score=339.21 Aligned_cols=294 Identities=19% Similarity=0.287 Sum_probs=234.6
Q ss_pred ccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCC--hhhhhccCCCCeeeeecCCChhhhhhh
Q 001991 148 DIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPD--EDDLFSGVTDDMGHNFQANTVDDLEDF 224 (985)
Q Consensus 148 ~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpd--edDL~sG~SkGfGFV~ff~t~Edaee~ 224 (985)
.|||+||+. ++.+.|++. | +.+|.|... ..|..++.++|||||. |.+.++|+
T Consensus 2 sl~VgnLp~~vte~~L~~~--------------F--------~~~G~v~~v~v~~d~~t~~s~G~afV~-F~~~~~A~-- 56 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDL--------------F--------KPFGPVLSVRVCRDSVTRRSLGYGYVN-FQNPADAE-- 56 (562)
T ss_pred eEEEeCCCCCCCHHHHHHH--------------H--------HhcCCEEEEEEEecCCCCCcceEEEEE-ECCHHHHH--
Confidence 699999997 888889988 8 444544441 1233467899999999 66888888
Q ss_pred HHHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEE
Q 001991 225 DLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT 304 (985)
Q Consensus 225 ~ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~s 304 (985)
+|+..+++..+.| +.+.+.. +.. +........++|||+|||.++++++|+++|++||.|.+
T Consensus 57 ~Al~~ln~~~i~g-k~i~i~~----------------s~~--~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~ 117 (562)
T TIGR01628 57 RALETMNFKRLGG-KPIRIMW----------------SQR--DPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILS 117 (562)
T ss_pred HHHHHhCCCEECC-eeEEeec----------------ccc--cccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcce
Confidence 8999999988873 3322111 110 00112223568999999999999999999999999999
Q ss_pred EEe----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCC-CcccccccceeeecCCCCCCHHHHHH
Q 001991 305 IYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP-SEKDANQGTLVVFNLDSSVSTEELHQ 379 (985)
Q Consensus 305 Vki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~~-~~~~~~~~tLfV~NLp~svTeedLre 379 (985)
|++ +++++|||||+|.+.++|++|++.++|..+.++.|.|....++... .......++|||+||+.++|+++|++
T Consensus 118 ~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~ 197 (562)
T TIGR01628 118 CKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRE 197 (562)
T ss_pred eEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHH
Confidence 876 4678999999999999999999999999999999999877665554 22334567899999999999999999
Q ss_pred HhhccCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCceeC----CceEEEEeccCcchhh--hhhhhhhhc-
Q 001991 380 IFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVA----GKQIKLEASRPGGARR--FMVQSEQEQ- 448 (985)
Q Consensus 380 lFs~fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~----Gr~IkV~~A~~k~~Rr--l~qq~eq~q- 448 (985)
+|++||+|.++++..+ .+|||||+|.+.++|.+|++.|||..|. |+.|.|.+++.+.++. +....++.+
T Consensus 198 ~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~ 277 (562)
T TIGR01628 198 LFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQ 277 (562)
T ss_pred HHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhh
Confidence 9999999999988654 5789999999999999999999999999 9999999998887663 222222221
Q ss_pred ------cCCCcc-cCCCCCCCcccc----ccccceEEE---ecCCCCccee
Q 001991 449 ------DDLNLC-QIPFDDLSSGQM----VSSGVITST---CMDNGSIQVL 485 (985)
Q Consensus 449 ------~e~nLy-kNlp~svt~e~L----~~fG~I~S~---~~enG~srgf 485 (985)
...+|| +||+.++++++| +.||.|+++ ..++|.++||
T Consensus 278 ~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~ 328 (562)
T TIGR01628 278 ERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGF 328 (562)
T ss_pred hhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCe
Confidence 224788 999999999999 899999998 4467888886
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=2.1e-32 Score=306.34 Aligned_cols=247 Identities=17% Similarity=0.287 Sum_probs=196.3
Q ss_pred CcccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCC--hhhhhccCCCCeeeeecCCChhhhh
Q 001991 146 LSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPD--EDDLFSGVTDDMGHNFQANTVDDLE 222 (985)
Q Consensus 146 l~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpd--edDL~sG~SkGfGFV~ff~t~Edae 222 (985)
-.+|||+||+. ++.+.|++. | ..+|.|... ..|..+|.++|||||+ |.+.++|+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~--------------F--------~~~G~i~~v~i~~d~~~g~s~g~afV~-f~~~~~A~ 59 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSL--------------F--------TSIGEIESCKLVRDKVTGQSLGYGFVN-YVRPEDAE 59 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHH--------------H--------HccCCEEEEEEEEcCCCCccceEEEEE-ECcHHHHH
Confidence 35899999997 888899988 8 555655441 1222368899999999 56788888
Q ss_pred hhHHHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcE
Q 001991 223 DFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDI 302 (985)
Q Consensus 223 e~~ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I 302 (985)
+|+..++|..|. +..+.+..... .......++|||+|||..+++++|+++|++||.|
T Consensus 60 --~Ai~~l~g~~l~-g~~i~v~~a~~--------------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i 116 (352)
T TIGR01661 60 --KAVNSLNGLRLQ-NKTIKVSYARP--------------------SSDSIKGANLYVSGLPKTMTQHELESIFSPFGQI 116 (352)
T ss_pred --HHHhhcccEEEC-CeeEEEEeecc--------------------cccccccceEEECCccccCCHHHHHHHHhccCCE
Confidence 899999999998 44333322111 0112345789999999999999999999999999
Q ss_pred EEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccc--ccccccccCCCCCCCc----------------c---
Q 001991 303 RTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSIPKDNPSE----------------K--- 356 (985)
Q Consensus 303 ~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~G--r~L~V~~a~pk~~~~~----------------~--- 356 (985)
..+++ ++.++|||||+|.+.++|++|++.|+|..+.| .+|.|.++........ .
T Consensus 117 ~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (352)
T TIGR01661 117 ITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPL 196 (352)
T ss_pred EEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCc
Confidence 98865 45689999999999999999999999999887 5677777643321000 0
Q ss_pred ---------------------------------------------------------------------cccccceeeec
Q 001991 357 ---------------------------------------------------------------------DANQGTLVVFN 367 (985)
Q Consensus 357 ---------------------------------------------------------------------~~~~~tLfV~N 367 (985)
.....+|||+|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~N 276 (352)
T TIGR01661 197 STILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYN 276 (352)
T ss_pred cccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeC
Confidence 00112599999
Q ss_pred CCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcchh
Q 001991 368 LDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGAR 438 (985)
Q Consensus 368 Lp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~~R 438 (985)
||.++++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+|++.|||..|+||+|+|.|+..++.|
T Consensus 277 L~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~~ 352 (352)
T TIGR01661 277 LSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAYR 352 (352)
T ss_pred CCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCCC
Confidence 9999999999999999999999998754 5899999999999999999999999999999999999887643
No 6
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=4.7e-31 Score=298.40 Aligned_cols=271 Identities=22% Similarity=0.333 Sum_probs=230.3
Q ss_pred cccCCCCeeeecccCCCCCcccCCCcccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCChh-
Q 001991 122 INSLSGNRSGINGIQSESSLFSSSLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDED- 199 (985)
Q Consensus 122 ~~~~~g~~i~im~s~rd~sl~sSsl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpded- 199 (985)
...++|++|||||++||+++ ||++||+. +|++.||++ | +.+|+|||++-
T Consensus 59 ~~~~~~~~~rim~s~rd~~~-------~~i~nl~~~~~~~~~~d~--------------f--------~~~g~ilS~kv~ 109 (369)
T KOG0123|consen 59 FDVLKGKPIRIMWSQRDPSL-------VFIKNLDESIDNKSLYDT--------------F--------SEFGNILSCKVA 109 (369)
T ss_pred CcccCCcEEEeehhccCCce-------eeecCCCcccCcHHHHHH--------------H--------HhhcCeeEEEEE
Confidence 46899999999999999998 99999997 999999999 9 99999999331
Q ss_pred hhhccCCCCeeeeecCCChhhhhhhHHHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEE
Q 001991 200 DLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLF 279 (985)
Q Consensus 200 DL~sG~SkGfGFV~ff~t~Edaee~~ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLf 279 (985)
.-..| ++|| ||+ |+++++|+ .++..+||+.+. ++++.+|.......+. ..... .....+.+|
T Consensus 110 ~~~~g-~kg~-FV~-f~~e~~a~--~ai~~~ng~ll~-~kki~vg~~~~~~er~-----------~~~~~-~~~~~t~v~ 171 (369)
T KOG0123|consen 110 TDENG-SKGY-FVQ-FESEESAK--KAIEKLNGMLLN-GKKIYVGLFERKEERE-----------APLGE-YKKRFTNVY 171 (369)
T ss_pred EcCCC-ceee-EEE-eCCHHHHH--HHHHHhcCcccC-CCeeEEeeccchhhhc-----------ccccc-hhhhhhhhh
Confidence 11145 9999 999 66888888 899999999998 7777887765532211 01111 234568999
Q ss_pred EecCCCCCCHHHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCC-
Q 001991 280 VRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPS- 354 (985)
Q Consensus 280 VgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~~~- 354 (985)
|.|++.+++++.|.++|..||+|.++.+ .+++++|+||.|++.++|..|++.|++..+.+..+.|..+..+.+..
T Consensus 172 vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~ 251 (369)
T KOG0123|consen 172 VKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREA 251 (369)
T ss_pred eeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchhhHH
Confidence 9999999999999999999999999875 57789999999999999999999999999999999998887644321
Q ss_pred -------------cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHh
Q 001991 355 -------------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTL 417 (985)
Q Consensus 355 -------------~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~L 417 (985)
.......+|||.||+..++++.|+++|+.||+|.+++++.+ .+||+||+|...++|.+|+..+
T Consensus 252 ~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~ 331 (369)
T KOG0123|consen 252 ELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEM 331 (369)
T ss_pred HHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhh
Confidence 11345569999999999999999999999999999888643 6899999999999999999999
Q ss_pred CCceeCCceEEEEeccCcchhh
Q 001991 418 NRSDVAGKQIKLEASRPGGARR 439 (985)
Q Consensus 418 NG~~I~Gr~IkV~~A~~k~~Rr 439 (985)
|+..+.+++|.|.+++.+..|+
T Consensus 332 n~~~i~~k~l~vav~qr~~~r~ 353 (369)
T KOG0123|consen 332 NGRLIGGKPLYVAVAQRKEDRR 353 (369)
T ss_pred ChhhhcCCchhhhHHhhhccch
Confidence 9999999999999999777665
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=1.1e-29 Score=297.59 Aligned_cols=292 Identities=16% Similarity=0.186 Sum_probs=212.4
Q ss_pred ccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhHH
Q 001991 148 DIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFDL 226 (985)
Q Consensus 148 ~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~ff~t~Edaee~~a 226 (985)
.|||+||++ +++++|++. | +.+|.|.... + -.+||||||+ |++.++|+ .|
T Consensus 4 vv~V~nLp~~~te~~L~~~--------------f--------~~fG~V~~v~--i--~~~k~~afVe-f~~~e~A~--~A 54 (481)
T TIGR01649 4 VVHVRNLPQDVVEADLVEA--------------L--------IPFGPVSYVM--M--LPGKRQALVE-FEDEESAK--AC 54 (481)
T ss_pred EEEEcCCCCCCCHHHHHHH--------------H--------HhcCCeeEEE--E--ECCCCEEEEE-eCchHHHH--HH
Confidence 699999998 899899988 8 5566555422 1 1267899999 56788878 77
Q ss_pred Hhc--cCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEE
Q 001991 227 FSS--GGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT 304 (985)
Q Consensus 227 i~~--~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~s 304 (985)
+.. .++..+. +..+.+...... ...... +.. ..........+|||+||+..+|+++|+++|+.||+|..
T Consensus 55 i~~~~~~~~~l~-g~~l~v~~s~~~---~~~~~~--~~~---~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~ 125 (481)
T TIGR01649 55 VNFATSVPIYIR-GQPAFFNYSTSQ---EIKRDG--NSD---FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLR 125 (481)
T ss_pred HHHhhcCCceEc-CeEEEEEecCCc---ccccCC--CCc---ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEE
Confidence 764 5788887 443333222110 000000 000 00111223468999999999999999999999999999
Q ss_pred EEe-ccccceEEEEEeCCHHHHHHHHHHccCccccc--ccccccccCCCCC-------CC--------------------
Q 001991 305 IYT-ACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSIPKDN-------PS-------------------- 354 (985)
Q Consensus 305 Vki-tgksrGfAFV~F~d~esA~kAi~~Lng~~I~G--r~L~V~~a~pk~~-------~~-------------------- 354 (985)
|++ ....+++|||+|.+.++|.+|++.|||+.|.+ ..|+|.|+.+..- ..
T Consensus 126 v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~ 205 (481)
T TIGR01649 126 IVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTH 205 (481)
T ss_pred EEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccc
Confidence 987 33345799999999999999999999999965 4677776654210 00
Q ss_pred ----c------------------------------------------------------------ccccccceeeecCCC
Q 001991 355 ----E------------------------------------------------------------KDANQGTLVVFNLDS 370 (985)
Q Consensus 355 ----~------------------------------------------------------------~~~~~~tLfV~NLp~ 370 (985)
. ...+.++|||+||++
T Consensus 206 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~ 285 (481)
T TIGR01649 206 RQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQ 285 (481)
T ss_pred cccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCC
Confidence 0 001345899999998
Q ss_pred -CCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcchhhhh--------
Q 001991 371 -SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFM-------- 441 (985)
Q Consensus 371 -svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~~Rrl~-------- 441 (985)
.+|+++|+++|+.||.|.+|+++.+++|||||+|.+.++|.+|++.|||..|.|++|+|.+++........
T Consensus 286 ~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~ 365 (481)
T TIGR01649 286 EKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGL 365 (481)
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCC
Confidence 69999999999999999999999888999999999999999999999999999999999998654211000
Q ss_pred ---hhhh---------hh--------ccCCCcc-cCCCCCCCcccc----ccccc--eEEEec
Q 001991 442 ---VQSE---------QE--------QDDLNLC-QIPFDDLSSGQM----VSSGV--ITSTCM 477 (985)
Q Consensus 442 ---qq~e---------q~--------q~e~nLy-kNlp~svt~e~L----~~fG~--I~S~~~ 477 (985)
+... .. ....+|| +|||.++++++| ..||. |+.++.
T Consensus 366 ~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~ 428 (481)
T TIGR01649 366 TSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKF 428 (481)
T ss_pred cccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEE
Confidence 0000 00 0123677 999999999999 88997 777744
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=3.5e-29 Score=295.25 Aligned_cols=236 Identities=21% Similarity=0.306 Sum_probs=190.8
Q ss_pred cccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCCh--hhhhccCCCCeeeeecCCChhhhhh
Q 001991 147 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDE--DDLFSGVTDDMGHNFQANTVDDLED 223 (985)
Q Consensus 147 ~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpde--dDL~sG~SkGfGFV~ff~t~Edaee 223 (985)
.+|||+||++ ++++.|.+. | ..+|.|...+ .| .++.++|||||+ |.+.|+|+
T Consensus 59 ~~lFVgnLp~~~tEd~L~~~--------------F--------~~~G~I~~vrl~~D-~sG~sRGfaFV~-F~~~e~A~- 113 (578)
T TIGR01648 59 CEVFVGKIPRDLYEDELVPL--------------F--------EKAGPIYELRLMMD-FSGQNRGYAFVT-FCGKEEAK- 113 (578)
T ss_pred CEEEeCCCCCCCCHHHHHHH--------------H--------HhhCCEEEEEEEEC-CCCCccceEEEE-eCCHHHHH-
Confidence 5899999997 888889888 8 3444443311 12 478999999999 66888888
Q ss_pred hHHHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCc-E
Q 001991 224 FDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGD-I 302 (985)
Q Consensus 224 ~~ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~-I 302 (985)
+|+..++|.++...+.+.+ . .....++|||+|||.++++++|.+.|++++. +
T Consensus 114 -~Ai~~lng~~i~~Gr~l~V----------------~----------~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egv 166 (578)
T TIGR01648 114 -EAVKLLNNYEIRPGRLLGV----------------C----------ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGV 166 (578)
T ss_pred -HHHHHcCCCeecCCccccc----------------c----------ccccCceeEeecCCcchhhHHHHHHhhcccCCc
Confidence 8999999998862222110 0 0123589999999999999999999999974 3
Q ss_pred EEEEe------ccccceEEEEEeCCHHHHHHHHHHccC--cccccccccccccCCCCCCCcc-cccccceeeecCCCCCC
Q 001991 303 RTIYT------ACKHRGFVMISYYDIRAARNAMKALQN--KPLRRRKLDIHYSIPKDNPSEK-DANQGTLVVFNLDSSVS 373 (985)
Q Consensus 303 ~sVki------tgksrGfAFV~F~d~esA~kAi~~Lng--~~I~Gr~L~V~~a~pk~~~~~~-~~~~~tLfV~NLp~svT 373 (985)
..+.+ .++++|||||+|.+.++|..|++.|+. ..+.|+.|.|.|+.++....+. ....++|||+||+.+++
T Consensus 167 v~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~t 246 (578)
T TIGR01648 167 VDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTT 246 (578)
T ss_pred eEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccccccccccEEEEeCCCCCCC
Confidence 33322 356899999999999999999998864 3578999999999887654322 23346899999999999
Q ss_pred HHHHHHHhhcc--CCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcch
Q 001991 374 TEELHQIFGIY--GEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 437 (985)
Q Consensus 374 eedLrelFs~f--G~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~~ 437 (985)
+++|+++|++| |+|++|+++ ++||||+|.+.++|++|++.|||.+|.|++|+|.|++++..
T Consensus 247 ee~L~~~F~~f~~G~I~rV~~~---rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 247 EEIIEKSFSEFKPGKVERVKKI---RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HHHHHHHHHhcCCCceEEEEee---cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 99999999999 999999875 57999999999999999999999999999999999988653
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=3.3e-28 Score=285.31 Aligned_cols=287 Identities=18% Similarity=0.210 Sum_probs=206.3
Q ss_pred cccCCCCeeeecccCCCCCcc----------cCCCcccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeE
Q 001991 122 INSLSGNRSGINGIQSESSLF----------SSSLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQT 190 (985)
Q Consensus 122 ~~~~~g~~i~im~s~rd~sl~----------sSsl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~ 190 (985)
...+.|++|+|+|+.+...-+ .+....|||+||.. ++.+.|+.. | ..
T Consensus 62 ~~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~--------------F--------~~ 119 (481)
T TIGR01649 62 PIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQI--------------F--------NP 119 (481)
T ss_pred CceEcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHH--------------H--------hc
Confidence 467899999999986542111 12344699999986 888888888 8 44
Q ss_pred ecCcCCChhhhhccCCCCeeeeecCCChhhhhhhHHHhccCCeeEcCCc-ch----------hhhccccc---ccCC-CC
Q 001991 191 IGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDD-RL----------FAVQKNSD---FVGG-VS 255 (985)
Q Consensus 191 iGnILpdedDL~sG~SkGfGFV~ff~t~Edaee~~ai~~~nG~eLegd~-~~----------~vg~~ls~---l~k~-~~ 255 (985)
+|.|+... +..-...++|||+ |++.++|+ +|+..++|.++.+.. .+ .+.+.... ++.. .+
T Consensus 120 ~G~V~~v~--i~~~~~~~~afVe-f~~~~~A~--~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~ 194 (481)
T TIGR01649 120 YGKVLRIV--TFTKNNVFQALVE-FESVNSAQ--HAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLP 194 (481)
T ss_pred cCCEEEEE--EEecCCceEEEEE-ECCHHHHH--HHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCC
Confidence 55554411 0011124689999 56788878 899999999986431 11 11110000 0000 00
Q ss_pred -------------CCCC----------CCC--C-------------c---------------------C--CCCCCCCCC
Q 001991 256 -------------NQGV----------SAG--S-------------V---------------------V--GEHPYGEHP 274 (985)
Q Consensus 256 -------------n~~~----------~~~--~-------------~---------------------~--~e~~~~e~~ 274 (985)
.+.. .++ . . . .-.+....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (481)
T TIGR01649 195 GRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGP 274 (481)
T ss_pred CCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCC
Confidence 0000 000 0 0 0 000011346
Q ss_pred CcEEEEecCCC-CCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCC
Q 001991 275 SRTLFVRNINS-NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP 353 (985)
Q Consensus 275 srtLfVgNLP~-~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~~ 353 (985)
+++|||+|||+ .+|+++|+++|+.||.|..|++....+|||||+|.+.++|++|++.|||..|.|++|+|.++..+...
T Consensus 275 ~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~ 354 (481)
T TIGR01649 275 GSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQ 354 (481)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccccc
Confidence 78999999998 69999999999999999999985556899999999999999999999999999999999987543110
Q ss_pred Cc------------c---------------------cccccceeeecCCCCCCHHHHHHHhhccCC--EEEEEEcCCC--
Q 001991 354 SE------------K---------------------DANQGTLVVFNLDSSVSTEELHQIFGIYGE--IREIRDTQHK-- 396 (985)
Q Consensus 354 ~~------------~---------------------~~~~~tLfV~NLp~svTeedLrelFs~fG~--I~~Vri~~~s-- 396 (985)
.. + ..+..+|||+|||.++++++|+++|+.||. |..|++.+..
T Consensus 355 ~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~ 434 (481)
T TIGR01649 355 PPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNE 434 (481)
T ss_pred CCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCC
Confidence 00 0 013458999999999999999999999998 8888886543
Q ss_pred -CcEEEEEEcCHHHHHHHHHHhCCceeCCce------EEEEeccCc
Q 001991 397 -HNHKFIEFYDIRAAETALRTLNRSDVAGKQ------IKLEASRPG 435 (985)
Q Consensus 397 -kGfaFVeF~d~edA~kAI~~LNG~~I~Gr~------IkV~~A~~k 435 (985)
+++|||+|.+.++|.+||..||+..|.++. |+|.|++++
T Consensus 435 ~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 435 RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 789999999999999999999999999985 999999864
No 10
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=1.7e-27 Score=266.80 Aligned_cols=159 Identities=22% Similarity=0.408 Sum_probs=143.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 348 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~ 348 (985)
+.++|||+|||.++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4689999999999999999999999999999876 57789999999999999999999999999999999999998
Q ss_pred CCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeC
Q 001991 349 PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVA 423 (985)
Q Consensus 349 pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~ 423 (985)
++... ....+|||+|||..+++++|+++|++||.|..+++..+ .+|||||+|.+.++|++|++.|||..+.
T Consensus 82 ~~~~~----~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~ 157 (352)
T TIGR01661 82 PSSDS----IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS 157 (352)
T ss_pred ccccc----cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC
Confidence 76432 34568999999999999999999999999999887643 5789999999999999999999999997
Q ss_pred C--ceEEEEeccCcc
Q 001991 424 G--KQIKLEASRPGG 436 (985)
Q Consensus 424 G--r~IkV~~A~~k~ 436 (985)
| .+|.|.++....
T Consensus 158 g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 158 GCTEPITVKFANNPS 172 (352)
T ss_pred CCceeEEEEECCCCC
Confidence 7 678999986543
No 11
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=5.4e-27 Score=259.60 Aligned_cols=242 Identities=21% Similarity=0.329 Sum_probs=193.2
Q ss_pred CcccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhh
Q 001991 146 LSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDF 224 (985)
Q Consensus 146 l~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~ff~t~Edaee~ 224 (985)
.+.|||++|+. +-+++|... |+...+|-... |. -|..+|.+|||+||. |.+.|+|+
T Consensus 83 G~EVfvGkIPrD~~EdeLvpl--------------fEkiG~I~elR----LM--mD~~sG~nRGYAFVt-f~~Ke~Aq-- 139 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPL--------------FEKIGKIYELR----LM--MDPFSGDNRGYAFVT-FCTKEEAQ-- 139 (506)
T ss_pred CceEEecCCCccccchhhHHH--------------HHhccceeeEE----Ee--ecccCCCCcceEEEE-eecHHHHH--
Confidence 35799999986 666666655 74333331111 11 222489999999999 55777777
Q ss_pred HHHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCc-EE
Q 001991 225 DLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGD-IR 303 (985)
Q Consensus 225 ~ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~-I~ 303 (985)
.||+..|+.|+...+.+ +.+ -....++|||+|||.+.++++|++.|++.++ |+
T Consensus 140 ~Aik~lnn~Eir~GK~i--gvc------------------------~Svan~RLFiG~IPK~k~keeIlee~~kVteGVv 193 (506)
T KOG0117|consen 140 EAIKELNNYEIRPGKLL--GVC------------------------VSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVV 193 (506)
T ss_pred HHHHHhhCccccCCCEe--EEE------------------------EeeecceeEeccCCccccHHHHHHHHHhhCCCee
Confidence 79999898888733321 111 1235689999999999999999999999986 55
Q ss_pred EEEe------ccccceEEEEEeCCHHHHHHHHHHccC--cccccccccccccCCCCCCCccc-ccccceeeecCCCCCCH
Q 001991 304 TIYT------ACKHRGFVMISYYDIRAARNAMKALQN--KPLRRRKLDIHYSIPKDNPSEKD-ANQGTLVVFNLDSSVST 374 (985)
Q Consensus 304 sVki------tgksrGfAFV~F~d~esA~kAi~~Lng--~~I~Gr~L~V~~a~pk~~~~~~~-~~~~tLfV~NLp~svTe 374 (985)
.|.+ ..++||||||+|++...|..|-+.|-. ..+.|..+.|.|+.|+.+..+.. ..-..|||+||+.++|+
T Consensus 194 dVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTe 273 (506)
T KOG0117|consen 194 DVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTE 273 (506)
T ss_pred EEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhH
Confidence 5543 578999999999999999999987644 46789999999999988765442 23458999999999999
Q ss_pred HHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcchhh
Q 001991 375 EELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARR 439 (985)
Q Consensus 375 edLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~~Rr 439 (985)
|.|+++|++||.|+.|+.++ .||||.|.+.++|.+|++.+||++|.|..|.|.+|+|...++
T Consensus 274 E~lk~~F~~~G~veRVkk~r---DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 274 ETLKKLFNEFGKVERVKKPR---DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred HHHHHHHHhccceEEeeccc---ceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhc
Confidence 99999999999999998774 499999999999999999999999999999999999987665
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=1.8e-26 Score=271.17 Aligned_cols=267 Identities=16% Similarity=0.189 Sum_probs=187.0
Q ss_pred cccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCC--ChhhhhccCCCCeeeeecCCChhhhhh
Q 001991 147 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLP--DEDDLFSGVTDDMGHNFQANTVDDLED 223 (985)
Q Consensus 147 ~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILp--dedDL~sG~SkGfGFV~ff~t~Edaee 223 (985)
-.|||+||+. ++.+.|.+. |... +....++...+ ...++..+..+|||||+ |.+.++|+
T Consensus 176 r~lyVgnLp~~~t~~~l~~~--------------F~~~--~~~~~~~~~~~~~~v~~~~~~~~kg~afVe-F~~~e~A~- 237 (509)
T TIGR01642 176 RRLYVGGIPPEFVEEAVVDF--------------FNDL--MIATGYHKAEDGKHVSSVNINKEKNFAFLE-FRTVEEAT- 237 (509)
T ss_pred cEEEEeCCCCCCCHHHHHHH--------------HHHH--HHhcCCCCCCCCCceEEEEECCCCCEEEEE-eCCHHHHh-
Confidence 4699999998 888888877 6321 01111111111 01122244578999999 55777777
Q ss_pred hHHHhccCCeeEcCCcchhhhcccccccCC--CCC--C---CCCCCCc--CCCCCCCCCCCcEEEEecCCCCCCHHHHHH
Q 001991 224 FDLFSSGGGMELEGDDRLFAVQKNSDFVGG--VSN--Q---GVSAGSV--VGEHPYGEHPSRTLFVRNINSNVEDSELKA 294 (985)
Q Consensus 224 ~~ai~~~nG~eLegd~~~~vg~~ls~l~k~--~~n--~---~~~~~~~--~~e~~~~e~~srtLfVgNLP~~vTEedLre 294 (985)
.|+ .++|+.|.| ..+.+.+........ ... . ....... ...........++|||+|||..+++++|++
T Consensus 238 -~Al-~l~g~~~~g-~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~ 314 (509)
T TIGR01642 238 -FAM-ALDSIIYSN-VFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKE 314 (509)
T ss_pred -hhh-cCCCeEeeC-ceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 677 589999984 444443321111000 000 0 0000000 000011234568999999999999999999
Q ss_pred hhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCc--------------
Q 001991 295 LFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSE-------------- 355 (985)
Q Consensus 295 lFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~~~~-------------- 355 (985)
+|+.||.|..+.+ ++.++|||||+|.+.++|..|++.|+|..|.|+.|.|.++........
T Consensus 315 ~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~ 394 (509)
T TIGR01642 315 LLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLA 394 (509)
T ss_pred HHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCcccccccccccccc
Confidence 9999999998865 577899999999999999999999999999999999998754321100
Q ss_pred ----------ccccccceeeecCCCC--C--------CHHHHHHHhhccCCEEEEEEcCC--------CCcEEEEEEcCH
Q 001991 356 ----------KDANQGTLVVFNLDSS--V--------STEELHQIFGIYGEIREIRDTQH--------KHNHKFIEFYDI 407 (985)
Q Consensus 356 ----------~~~~~~tLfV~NLp~s--v--------TeedLrelFs~fG~I~~Vri~~~--------skGfaFVeF~d~ 407 (985)
...+..+|+|.|+... + ..++|+++|++||.|+.|+|+.. ..|++||+|.+.
T Consensus 395 ~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~ 474 (509)
T TIGR01642 395 KALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADV 474 (509)
T ss_pred ccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCH
Confidence 0124567899999532 1 23689999999999999998643 358999999999
Q ss_pred HHHHHHHHHhCCceeCCceEEEEeccC
Q 001991 408 RAAETALRTLNRSDVAGKQIKLEASRP 434 (985)
Q Consensus 408 edA~kAI~~LNG~~I~Gr~IkV~~A~~ 434 (985)
++|++|+..|||..|+|+.|.|.|...
T Consensus 475 e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 475 RSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 999999999999999999999999764
No 13
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.94 E-value=4.3e-26 Score=256.58 Aligned_cols=163 Identities=23% Similarity=0.411 Sum_probs=146.4
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
......++|||+|||+++|+++|+++|+.||+|++|++ +++++|||||+|.+.++|++|++.|++..|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 35567899999999999999999999999999999976 5778999999999999999999999999999999999
Q ss_pred cccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCC
Q 001991 345 HYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNR 419 (985)
Q Consensus 345 ~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG 419 (985)
.++.+... .....+|||.|||..+|+++|+++|++||+|+.|+++.+ +++||||+|.+.++|++||+.||+
T Consensus 182 ~~a~p~~~----~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 182 SYARPGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred eccccccc----ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 99876432 234568999999999999999999999999999988754 468999999999999999999999
Q ss_pred ceeCC--ceEEEEeccCcc
Q 001991 420 SDVAG--KQIKLEASRPGG 436 (985)
Q Consensus 420 ~~I~G--r~IkV~~A~~k~ 436 (985)
..+.+ ++|+|.+++...
T Consensus 258 ~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 258 VIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred CccCCCceeEEEEECCccc
Confidence 98865 799999988654
No 14
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=4.5e-26 Score=264.50 Aligned_cols=257 Identities=19% Similarity=0.294 Sum_probs=188.0
Q ss_pred cccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhH
Q 001991 147 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFD 225 (985)
Q Consensus 147 ~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~ff~t~Edaee~~ 225 (985)
-.|||+||+. ++.+.|++. |....++....+ + .|..++.++|||||+ |.+.++|+ +
T Consensus 90 ~~l~V~nlp~~~~~~~l~~~--------------F~~~G~v~~v~i---~---~d~~~~~skg~afVe-F~~~e~A~--~ 146 (457)
T TIGR01622 90 RTVFVLQLALKARERDLYEF--------------FSKVGKVRDVQC---I---KDRNSRRSKGVAYVE-FYDVESVI--K 146 (457)
T ss_pred cEEEEeCCCCCCCHHHHHHH--------------HHhcCCeeEEEE---e---ecCCCCCcceEEEEE-ECCHHHHH--H
Confidence 3699999998 888888877 744333222111 1 122478899999999 55777777 6
Q ss_pred HHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEE
Q 001991 226 LFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI 305 (985)
Q Consensus 226 ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV 305 (985)
|+. ++|..|.|. .+.+..... .++...... ..........++|||+|||..+++++|+++|++||.|..|
T Consensus 147 Al~-l~g~~~~g~-~i~v~~~~~-----~~~~~~~~~---~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v 216 (457)
T TIGR01622 147 ALA-LTGQMLLGR-PIIVQSSQA-----EKNRAAKAA---THQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDV 216 (457)
T ss_pred HHH-hCCCEECCe-eeEEeecch-----hhhhhhhcc---cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEE
Confidence 775 788888733 332211111 001000000 0001112237999999999999999999999999999998
Q ss_pred Ee-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCC---------------------------
Q 001991 306 YT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP--------------------------- 353 (985)
Q Consensus 306 ki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~~--------------------------- 353 (985)
.+ +++++|||||+|.+.++|.+|++.|+|..|.|++|.|.|+......
T Consensus 217 ~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (457)
T TIGR01622 217 QLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQ 296 (457)
T ss_pred EEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHH
Confidence 76 3578999999999999999999999999999999999995321000
Q ss_pred --------C-------------------------------------------------c--ccccccceeeecCCCCCC-
Q 001991 354 --------S-------------------------------------------------E--KDANQGTLVVFNLDSSVS- 373 (985)
Q Consensus 354 --------~-------------------------------------------------~--~~~~~~tLfV~NLp~svT- 373 (985)
. . ......+|+|.||-...+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~ 376 (457)
T TIGR01622 297 LMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATE 376 (457)
T ss_pred HHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCccc
Confidence 0 0 012345788899854433
Q ss_pred ---------HHHHHHHhhccCCEEEEEEc-CCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcc
Q 001991 374 ---------TEELHQIFGIYGEIREIRDT-QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 374 ---------eedLrelFs~fG~I~~Vri~-~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~ 436 (985)
.++|++.|++||.|+.|.+. +...|++||+|.+.++|.+|++.|||+.|+|+.|.|.+.....
T Consensus 377 ~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~ 449 (457)
T TIGR01622 377 EEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDV 449 (457)
T ss_pred ccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHH
Confidence 37899999999999999987 6678999999999999999999999999999999999986543
No 15
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=4.3e-26 Score=258.18 Aligned_cols=282 Identities=20% Similarity=0.280 Sum_probs=231.2
Q ss_pred ccccccCCCCCcccccccCcccccCCCCCCCCCcccccceeeEecCcCC--ChhhhhccCCCCeeeeecCCChhhhhhhH
Q 001991 148 DIFTRKMKLSGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLP--DEDDLFSGVTDDMGHNFQANTVDDLEDFD 225 (985)
Q Consensus 148 ~lFv~nL~~~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILp--dedDL~sG~SkGfGFV~ff~t~Edaee~~ 225 (985)
.||++ +.+++..|++. | +.+|.+++ -..|. + |-|||||. |.+.++++ +
T Consensus 3 sl~vg--~~v~e~~l~~~--------------f--------~~~~~v~s~rvc~d~-t--slgy~yvn-f~~~~da~--~ 52 (369)
T KOG0123|consen 3 SLYVG--PDVTEAMLFDK--------------F--------SPAGPVLSIRVCRDA-T--SLGYAYVN-FQQPADAE--R 52 (369)
T ss_pred ceecC--CcCChHHHHHH--------------h--------cccCCceeEEEeecC-C--ccceEEEe-cCCHHHHH--H
Confidence 46777 55777788888 8 88888888 23454 4 99999999 67888889 8
Q ss_pred HHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEE
Q 001991 226 LFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI 305 (985)
Q Consensus 226 ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV 305 (985)
|+..+|...+.|.+. +..|+.. ....|||+||+++++.++|.++|+.||+|.+|
T Consensus 53 A~~~~n~~~~~~~~~-----------------rim~s~r---------d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~ 106 (369)
T KOG0123|consen 53 ALDTMNFDVLKGKPI-----------------RIMWSQR---------DPSLVFIKNLDESIDNKSLYDTFSEFGNILSC 106 (369)
T ss_pred HHHHcCCcccCCcEE-----------------Eeehhcc---------CCceeeecCCCcccCcHHHHHHHHhhcCeeEE
Confidence 999999888874332 1122211 11229999999999999999999999999999
Q ss_pred Ee---ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCcc----cccccceeeecCCCCCCHHHHH
Q 001991 306 YT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEK----DANQGTLVVFNLDSSVSTEELH 378 (985)
Q Consensus 306 ki---tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~~~~~----~~~~~tLfV~NLp~svTeedLr 378 (985)
++ ..-++|| ||+|++.++|++|++.+||..+.+++|.|.....+..+... .....+++|.|++.+++++.|.
T Consensus 107 kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~ 185 (369)
T KOG0123|consen 107 KVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELK 185 (369)
T ss_pred EEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHH
Confidence 87 2338999 99999999999999999999999999999888877665322 2334589999999999999999
Q ss_pred HHhhccCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcchhh--hhhhhhh------
Q 001991 379 QIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARR--FMVQSEQ------ 446 (985)
Q Consensus 379 elFs~fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~~Rr--l~qq~eq------ 446 (985)
..|..||.|..+.++++ .++|+||.|+++++|..|++.||+..+.++.+.|..++.+.++. +.+..++
T Consensus 186 ~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~ 265 (369)
T KOG0123|consen 186 DLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRS 265 (369)
T ss_pred HhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhcc
Confidence 99999999999988764 58899999999999999999999999999999999999877665 3332222
Q ss_pred -hccCCCcc-cCCCCCCCcccc----ccccceEEE---ecCCCCcceec
Q 001991 447 -EQDDLNLC-QIPFDDLSSGQM----VSSGVITST---CMDNGSIQVLH 486 (985)
Q Consensus 447 -~q~e~nLy-kNlp~svt~e~L----~~fG~I~S~---~~enG~srgf~ 486 (985)
.....+|| +|++..++.+.| ..||+|+++ .+++|.++||.
T Consensus 266 ~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~g 314 (369)
T KOG0123|consen 266 VSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFG 314 (369)
T ss_pred ccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceE
Confidence 22335888 999999999999 799999998 66789998874
No 16
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=8.9e-26 Score=235.54 Aligned_cols=246 Identities=17% Similarity=0.278 Sum_probs=190.6
Q ss_pred CcccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhh
Q 001991 146 LSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDF 224 (985)
Q Consensus 146 l~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~ff~t~Edaee~ 224 (985)
-+||.|.=|+. .+.+++... |.|..|||....- .|..+|.|-|||||.|. ..+|+|
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSL--------------F~SiGeiEScKLv------RDKitGqSLGYGFVNYv-~p~DAe-- 97 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSL--------------FGSIGEIESCKLV------RDKITGQSLGYGFVNYV-RPKDAE-- 97 (360)
T ss_pred cceeeeeecccccCHHHHHHH--------------hhcccceeeeeee------eccccccccccceeeec-ChHHHH--
Confidence 35666666665 555555544 7444444432211 44469999999999965 667778
Q ss_pred HHHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEE
Q 001991 225 DLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT 304 (985)
Q Consensus 225 ~ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~s 304 (985)
+|+...||..|. .+.+.|.-. ..........+|||.+||..+|..||..+|++||.|..
T Consensus 98 ~AintlNGLrLQ-~KTIKVSyA--------------------RPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIIt 156 (360)
T KOG0145|consen 98 KAINTLNGLRLQ-NKTIKVSYA--------------------RPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIIT 156 (360)
T ss_pred HHHhhhcceeec-cceEEEEec--------------------cCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhh
Confidence 899999999998 443222111 11123445689999999999999999999999999876
Q ss_pred EE-----eccccceEEEEEeCCHHHHHHHHHHccCccccc--ccccccccCCCCCC------------------------
Q 001991 305 IY-----TACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSIPKDNP------------------------ 353 (985)
Q Consensus 305 Vk-----itgksrGfAFV~F~d~esA~kAi~~Lng~~I~G--r~L~V~~a~pk~~~------------------------ 353 (985)
-+ +++.+||.+||.|...++|+.||+.|||..-.| .+|.|+|+......
T Consensus 157 SRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~ 236 (360)
T KOG0145|consen 157 SRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQ 236 (360)
T ss_pred hhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccch
Confidence 54 378999999999999999999999999988766 57888877532110
Q ss_pred -----------------------------------CcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC---
Q 001991 354 -----------------------------------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH--- 395 (985)
Q Consensus 354 -----------------------------------~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~--- 395 (985)
+.......+|||.||.++.++.-|+++|.+||.|..|+++++
T Consensus 237 ~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~tt 316 (360)
T KOG0145|consen 237 AQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTT 316 (360)
T ss_pred hhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCc
Confidence 000112358999999999999999999999999999999765
Q ss_pred --CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCc
Q 001991 396 --KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 435 (985)
Q Consensus 396 --skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k 435 (985)
.+|||||.+.+.++|..||..|||..+++|.|.|.|...|
T Consensus 317 nkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 317 NKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred ccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 6899999999999999999999999999999999997654
No 17
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=6e-25 Score=231.03 Aligned_cols=161 Identities=20% Similarity=0.438 Sum_probs=148.4
Q ss_pred CcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001991 275 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 349 (985)
Q Consensus 275 srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~p 349 (985)
.-.|||+.|.+.++-++|++.|.+||+|.++++ ++++|||+||.|.+.++|++||..|||+.|.+|.|+..|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 567999999999999999999999999999875 799999999999999999999999999999999999999988
Q ss_pred CCCCCc------------ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHh
Q 001991 350 KDNPSE------------KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTL 417 (985)
Q Consensus 350 k~~~~~------------~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~L 417 (985)
|..... .....++|||+||+..+++++|++.|++||.|.+||+.++ +||+||.|++.|+|.+||..+
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-qGYaFVrF~tkEaAahAIv~m 220 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-QGYAFVRFETKEAAAHAIVQM 220 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-cceEEEEecchhhHHHHHHHh
Confidence 764321 1235679999999999999999999999999999999986 899999999999999999999
Q ss_pred CCceeCCceEEEEeccCcc
Q 001991 418 NRSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 418 NG~~I~Gr~IkV~~A~~k~ 436 (985)
|+.+|+|..+++.|.+...
T Consensus 221 Nntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 221 NNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred cCceeCceEEEEeccccCC
Confidence 9999999999999987644
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=2.5e-24 Score=254.67 Aligned_cols=165 Identities=19% Similarity=0.374 Sum_probs=145.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
....++|||+|||+++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 345689999999999999999999999999999976 678999999999999999999999999999999999986
Q ss_pred cCCCCCCC-------cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHH
Q 001991 347 SIPKDNPS-------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETAL 414 (985)
Q Consensus 347 a~pk~~~~-------~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI 414 (985)
........ ......++|||+||+.++++++|+++|+.||.|++|++..+ ++|||||+|.+.++|.+|+
T Consensus 184 p~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI 263 (612)
T TIGR01645 184 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 263 (612)
T ss_pred cccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHH
Confidence 54322110 11223468999999999999999999999999999998753 6899999999999999999
Q ss_pred HHhCCceeCCceEEEEeccCcc
Q 001991 415 RTLNRSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 415 ~~LNG~~I~Gr~IkV~~A~~k~ 436 (985)
+.||+..|+|+.|+|.++.++.
T Consensus 264 ~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 264 ASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HHhCCCeeCCeEEEEEecCCCc
Confidence 9999999999999999988643
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.91 E-value=2.1e-23 Score=246.93 Aligned_cols=169 Identities=12% Similarity=0.266 Sum_probs=127.7
Q ss_pred CCcccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCC--hhhhhccCCCCeeeeecCCChhhh
Q 001991 145 SLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPD--EDDLFSGVTDDMGHNFQANTVDDL 221 (985)
Q Consensus 145 sl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpd--edDL~sG~SkGfGFV~ff~t~Eda 221 (985)
.+..|||+||++ ++.+.|.+. | ..+|.|... ..|..++.++|||||+ |++.+++
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~l--------------F--------~~fG~I~sV~I~~D~~TgkskGfAFVe-F~s~e~A 162 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRA--------------F--------DPFGPIKSINMSWDPATGKHKGFAFVE-YEVPEAA 162 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHH--------------H--------HccCCEEEEEEeecCCCCCcCCeEEEE-eCcHHHH
Confidence 456899999998 888888888 8 445544441 1233478899999999 6688888
Q ss_pred hhhHHHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCc
Q 001991 222 EDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGD 301 (985)
Q Consensus 222 ee~~ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~ 301 (985)
+ .|+..++|..++ ++.+.+++... ... . ..............++|||+||++++++++|+++|+.||+
T Consensus 163 ~--~Ai~~lnG~~i~-GR~IkV~rp~~-----~p~---a-~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~ 230 (612)
T TIGR01645 163 Q--LALEQMNGQMLG-GRNIKVGRPSN-----MPQ---A-QPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE 230 (612)
T ss_pred H--HHHHhcCCeEEe-cceeeeccccc-----ccc---c-ccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCC
Confidence 8 899999999998 44444432111 000 0 0000011112235689999999999999999999999999
Q ss_pred EEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001991 302 IRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 348 (985)
Q Consensus 302 I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~ 348 (985)
|.++++ ++++||||||+|.+.++|.+|++.||+..|.|+.|+|.++.
T Consensus 231 I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 231 IVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred eeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 999976 46789999999999999999999999999999999986654
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.91 E-value=2.8e-23 Score=245.50 Aligned_cols=191 Identities=21% Similarity=0.285 Sum_probs=160.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCcccc-cccccccccC
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLR-RRKLDIHYSI 348 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~-Gr~L~V~~a~ 348 (985)
..++|||+|||.+++|++|+++|++||.|..|++ +++++|||||+|.+.++|++||+.||+..|. |+.|.|..+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 4589999999999999999999999999999976 5789999999999999999999999999885 7877776553
Q ss_pred CCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCC-EEEEEEc------CCCCcEEEEEEcCHHHHHHHHHHhCC--
Q 001991 349 PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGE-IREIRDT------QHKHNHKFIEFYDIRAAETALRTLNR-- 419 (985)
Q Consensus 349 pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~-I~~Vri~------~~skGfaFVeF~d~edA~kAI~~LNG-- 419 (985)
..++|||+|||.++++++|+++|++++. ++++.+. ..+++||||+|.+.++|.+|++.|+.
T Consensus 137 ----------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gk 206 (578)
T TIGR01648 137 ----------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGR 206 (578)
T ss_pred ----------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccc
Confidence 3568999999999999999999999864 4444432 13589999999999999999998864
Q ss_pred ceeCCceEEEEeccCcchhhhhhhhhhhccCCCcc-cCCCCCCCcccc----ccc--cceEEEecC
Q 001991 420 SDVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLC-QIPFDDLSSGQM----VSS--GVITSTCMD 478 (985)
Q Consensus 420 ~~I~Gr~IkV~~A~~k~~Rrl~qq~eq~q~e~nLy-kNlp~svt~e~L----~~f--G~I~S~~~e 478 (985)
..+.|+.|.|.|+.++.... .+.....+.|| +||+.++++++| +.| |+|..+...
T Consensus 207 i~l~Gr~I~VdwA~p~~~~d----~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~ 268 (578)
T TIGR01648 207 IQLWGHVIAVDWAEPEEEVD----EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI 268 (578)
T ss_pred eEecCceEEEEeeccccccc----ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee
Confidence 36789999999998765321 12223446789 999999999999 788 999998543
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=6.5e-23 Score=231.27 Aligned_cols=269 Identities=19% Similarity=0.281 Sum_probs=190.2
Q ss_pred cccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhH
Q 001991 147 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFD 225 (985)
Q Consensus 147 ~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~ff~t~Edaee~~ 225 (985)
..|||.+|+. ++++.|.+. |.....+...+.+ +. --++.++|||||+ |.-+||++ .
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~--------------FS~vGPik~~~vV----t~--~gs~~~RGfgfVt-Fam~ED~q--r 62 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEF--------------FSYVGPIKHAVVV----TN--KGSSEKRGFGFVT-FAMEEDVQ--R 62 (678)
T ss_pred ceEEEecCCCccchhHHHHh--------------hhcccCcceeEEe----cC--CCcccccCcccee-eehHhHHH--H
Confidence 6799999998 666556555 7333333222222 11 1145599999999 55778877 6
Q ss_pred HHhccCCeeEcCCcchhhhcccccccCC----CCC--CCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhccc
Q 001991 226 LFSSGGGMELEGDDRLFAVQKNSDFVGG----VSN--QGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQF 299 (985)
Q Consensus 226 ai~~~nG~eLegd~~~~vg~~ls~l~k~----~~n--~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~f 299 (985)
++....+..|+| ..+.+.......... ..+ ......+..........+.-.|.|+|||+.+.+.+|+.+|+.|
T Consensus 63 A~~e~~~~kf~G-r~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~ 141 (678)
T KOG0127|consen 63 ALAETEQSKFEG-RILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNF 141 (678)
T ss_pred HHHHhhcCcccc-eecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhc
Confidence 776656655552 223332221111000 000 0000000000001123346789999999999999999999999
Q ss_pred CcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCC----------------------
Q 001991 300 GDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP---------------------- 353 (985)
Q Consensus 300 G~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~~---------------------- 353 (985)
|.|..|.+ .++-.|||||.|.+..+|.+|++.+|+..|.||+|-|.|+.++...
T Consensus 142 G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e 221 (678)
T KOG0127|consen 142 GKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKE 221 (678)
T ss_pred ceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcc
Confidence 99999987 4556699999999999999999999999999999999998765310
Q ss_pred --------------------Cc-cc-------------------------------------------ccccceeeecCC
Q 001991 354 --------------------SE-KD-------------------------------------------ANQGTLVVFNLD 369 (985)
Q Consensus 354 --------------------~~-~~-------------------------------------------~~~~tLfV~NLp 369 (985)
.+ .+ ....+|||+|||
T Consensus 222 ~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~ 301 (678)
T KOG0127|consen 222 ADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLP 301 (678)
T ss_pred cccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCC
Confidence 00 00 012589999999
Q ss_pred CCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEEcCHHHHHHHHHHh-----CC-ceeCCceEEEEeccCcchh
Q 001991 370 SSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTL-----NR-SDVAGKQIKLEASRPGGAR 438 (985)
Q Consensus 370 ~svTeedLrelFs~fG~I~~Vri~~-----~skGfaFVeF~d~edA~kAI~~L-----NG-~~I~Gr~IkV~~A~~k~~R 438 (985)
+++|+++|+++|++||+|.++.++. .++|.|||.|.+..+|++||... .| ..|.||.|+|..+..+.+.
T Consensus 302 fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA 381 (678)
T KOG0127|consen 302 FDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEA 381 (678)
T ss_pred ccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHH
Confidence 9999999999999999999987753 47899999999999999999976 23 5789999999999987755
Q ss_pred h
Q 001991 439 R 439 (985)
Q Consensus 439 r 439 (985)
.
T Consensus 382 ~ 382 (678)
T KOG0127|consen 382 A 382 (678)
T ss_pred H
Confidence 4
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.89 E-value=8.4e-23 Score=237.24 Aligned_cols=163 Identities=26% Similarity=0.455 Sum_probs=144.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
.+.+.++|||+|||..+++++|+++|++||+|..|++ +++++|||||+|.+.++|++||. |+|+.+.|++|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 4556799999999999999999999999999999976 57789999999999999999995 99999999999998
Q ss_pred ccCCCCCCCc--------ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEEcCHHHHHH
Q 001991 346 YSIPKDNPSE--------KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAET 412 (985)
Q Consensus 346 ~a~pk~~~~~--------~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~-----~skGfaFVeF~d~edA~k 412 (985)
++........ ......+|||+|||..+++++|+++|++||.|..|.+.. ..+|||||+|.+.++|.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 8654332211 112357899999999999999999999999999998874 357899999999999999
Q ss_pred HHHHhCCceeCCceEEEEeccC
Q 001991 413 ALRTLNRSDVAGKQIKLEASRP 434 (985)
Q Consensus 413 AI~~LNG~~I~Gr~IkV~~A~~ 434 (985)
|++.|||..|.|++|+|.|+..
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccC
Confidence 9999999999999999999873
No 23
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=3.4e-22 Score=221.77 Aligned_cols=189 Identities=21% Similarity=0.308 Sum_probs=164.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccc-cccccccc
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLR-RRKLDIHY 346 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~-Gr~L~V~~ 346 (985)
...+-|||+.||.++.|++|.-+|++.|+|..+++ ++.+||||||.|.+.++|++|++.||+.+|. |+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 45689999999999999999999999999999975 7899999999999999999999999999985 88898887
Q ss_pred cCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCC-EEEEEEcC------CCCcEEEEEEcCHHHHHHHHHHhCC
Q 001991 347 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGE-IREIRDTQ------HKHNHKFIEFYDIRAAETALRTLNR 419 (985)
Q Consensus 347 a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~-I~~Vri~~------~skGfaFVeF~d~edA~kAI~~LNG 419 (985)
+. ..+.|||+|||...++++|++.|.+.++ |..|.+.+ +++|||||+|++...|..|-+.|-.
T Consensus 161 Sv----------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~ 230 (506)
T KOG0117|consen 161 SV----------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP 230 (506)
T ss_pred ee----------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC
Confidence 64 4678999999999999999999999885 66776643 3789999999999999999987743
Q ss_pred --ceeCCceEEEEeccCcchhhhhhhhhhhccCCCcc-cCCCCCCCcccc----ccccceEEE
Q 001991 420 --SDVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLC-QIPFDDLSSGQM----VSSGVITST 475 (985)
Q Consensus 420 --~~I~Gr~IkV~~A~~k~~Rrl~qq~eq~q~e~nLy-kNlp~svt~e~L----~~fG~I~S~ 475 (985)
..+-|..|.|+||.+.++-. -+-...-+-|| +||+.++|+|.| ..||.|..+
T Consensus 231 g~~klwgn~~tVdWAep~~e~d----ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRV 289 (506)
T KOG0117|consen 231 GKIKLWGNAITVDWAEPEEEPD----EDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERV 289 (506)
T ss_pred CceeecCCcceeeccCcccCCC----hhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEe
Confidence 36789999999999877443 12334457899 999999999999 778888888
No 24
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.88 E-value=4.7e-22 Score=233.89 Aligned_cols=164 Identities=15% Similarity=0.288 Sum_probs=137.5
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccc------------CcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQF------------GDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL 337 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~f------------G~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I 337 (985)
......++|||+|||+.+|+++|+++|.+| +.|..+.+ .+.+|||||+|.+.++|..|| +|+|..|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-~~~kg~afVeF~~~e~A~~Al-~l~g~~~ 247 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-NKEKNFAFLEFRTVEEATFAM-ALDSIIY 247 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-CCCCCEEEEEeCCHHHHhhhh-cCCCeEe
Confidence 455677999999999999999999999975 34555555 678999999999999999999 5999999
Q ss_pred ccccccccccCCCCCCC-------------------------cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEE
Q 001991 338 RRRKLDIHYSIPKDNPS-------------------------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD 392 (985)
Q Consensus 338 ~Gr~L~V~~a~pk~~~~-------------------------~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri 392 (985)
.|+.|.|.........+ .......+|||+|||..+++++|+++|+.||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 99999996432111000 00122468999999999999999999999999999887
Q ss_pred cCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCc
Q 001991 393 TQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 435 (985)
Q Consensus 393 ~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k 435 (985)
+.+ ++|||||+|.+.++|.+|++.|||..|.|++|.|.++...
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 643 6899999999999999999999999999999999998643
No 25
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=1.3e-21 Score=204.69 Aligned_cols=163 Identities=23% Similarity=0.413 Sum_probs=146.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
+...++|.|.-||.++|++||+.+|...|+|++|++ ++.+.||+||.|-++++|++|+..|||..+..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 445688999999999999999999999999999974 789999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc-----CCCCcEEEEEEcCHHHHHHHHHHhCCce
Q 001991 347 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSD 421 (985)
Q Consensus 347 a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~-----~~skGfaFVeF~d~edA~kAI~~LNG~~ 421 (985)
+.|..+. ....+|||.+||..+|..||.++|++||.|..-||. +-++|.|||.|+..++|++||+.|||..
T Consensus 118 ARPSs~~----Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 118 ARPSSDS----IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred ccCChhh----hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 9886543 556799999999999999999999999998776654 3479999999999999999999999998
Q ss_pred eCC--ceEEEEeccCcchh
Q 001991 422 VAG--KQIKLEASRPGGAR 438 (985)
Q Consensus 422 I~G--r~IkV~~A~~k~~R 438 (985)
-.| .+|.|+|+.....+
T Consensus 194 P~g~tepItVKFannPsq~ 212 (360)
T KOG0145|consen 194 PSGCTEPITVKFANNPSQK 212 (360)
T ss_pred CCCCCCCeEEEecCCcccc
Confidence 765 68999999865544
No 26
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=7.1e-22 Score=218.33 Aligned_cols=165 Identities=21% Similarity=0.416 Sum_probs=144.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCc-cccc--cccc
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNK-PLRR--RKLD 343 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~-~I~G--r~L~ 343 (985)
+...-+|||+-||..++|+||+++|++||.|.+|.+ ++.++|||||.|++.++|.+|+.+|+++ .|.| .+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 356689999999999999999999999999999854 7889999999999999999999999885 4666 5777
Q ss_pred ccccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCC
Q 001991 344 IHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNR 419 (985)
Q Consensus 344 V~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG 419 (985)
|+|+....++ -...++|||+-|+..++|.+++++|++||.|++|+|.++ +||||||+|.+.|.|..||++|||
T Consensus 111 vk~Ad~E~er---~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng 187 (510)
T KOG0144|consen 111 VKYADGERER---IVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNG 187 (510)
T ss_pred ecccchhhhc---cccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhcc
Confidence 8887654333 245779999999999999999999999999999998764 799999999999999999999999
Q ss_pred c-eeCC--ceEEEEeccCcchhh
Q 001991 420 S-DVAG--KQIKLEASRPGGARR 439 (985)
Q Consensus 420 ~-~I~G--r~IkV~~A~~k~~Rr 439 (985)
. .+.| .+|.|.||.++.+|.
T Consensus 188 ~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 188 TQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred ceeeccCCCceEEEecccCCCch
Confidence 7 5655 699999998877654
No 27
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=1.1e-21 Score=216.76 Aligned_cols=274 Identities=17% Similarity=0.280 Sum_probs=198.7
Q ss_pred ccccCCCCeeeecccCCCCCcccCCCcccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCC--C
Q 001991 121 GINSLSGNRSGINGIQSESSLFSSSLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLP--D 197 (985)
Q Consensus 121 ~~~~~~g~~i~im~s~rd~sl~sSsl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILp--d 197 (985)
.+....|..++-+.++..+.--..+.-+|||+-++. .++++|... | ..+|++.. -
T Consensus 9 ~~~~~~gs~~~~~~~~~~~d~~d~~~vKlfVgqIprt~sE~dlr~l--------------F--------e~yg~V~einl 66 (510)
T KOG0144|consen 9 PPSPCGGSSLADNGSLDHTDNPDGSAVKLFVGQIPRTASEKDLREL--------------F--------EKYGNVYEINL 66 (510)
T ss_pred CCCCCCCcchhhcCCCCCCCCCCchhhhheeccCCccccHHHHHHH--------------H--------HHhCceeEEEe
Confidence 345566777777777666665556777899999887 555555555 6 33343333 0
Q ss_pred hhhhhccCCCCeeeeecCCChhhhhhhHHHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcE
Q 001991 198 EDDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRT 277 (985)
Q Consensus 198 edDL~sG~SkGfGFV~ff~t~Edaee~~ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srt 277 (985)
-.|-.++.++||.||.|...+|+.+.+.|+.+ -..|.|... .+ ....+ ++|.. .....++
T Consensus 67 ~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn--~ktlpG~~~----pv-----------qvk~A--d~E~e-r~~~e~K 126 (510)
T KOG0144|consen 67 IKDKSTGQSKGCCFVKYYTRKEADEAINALHN--QKTLPGMHH----PV-----------QVKYA--DGERE-RIVEERK 126 (510)
T ss_pred ecccccCcccceEEEEeccHHHHHHHHHHhhc--ccccCCCCc----ce-----------eeccc--chhhh-ccccchh
Confidence 12335788999999998866666554444432 222321111 00 01101 11111 1134689
Q ss_pred EEEecCCCCCCHHHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCc-cccc--ccccccccCCC
Q 001991 278 LFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNK-PLRR--RKLDIHYSIPK 350 (985)
Q Consensus 278 LfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~-~I~G--r~L~V~~a~pk 350 (985)
|||+-|+..+||.|++++|++||.|++|++ .+.+||||||.|.+.|.|..||+.|||. .+.| .+|.|+|+.++
T Consensus 127 LFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtq 206 (510)
T KOG0144|consen 127 LFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQ 206 (510)
T ss_pred hhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccC
Confidence 999999999999999999999999999986 5789999999999999999999999995 4555 57888777654
Q ss_pred CCCC----------------------------------------------------------------------------
Q 001991 351 DNPS---------------------------------------------------------------------------- 354 (985)
Q Consensus 351 ~~~~---------------------------------------------------------------------------- 354 (985)
+++.
T Consensus 207 kdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~~~ta 286 (510)
T KOG0144|consen 207 KDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAAAATA 286 (510)
T ss_pred CCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhhhccc
Confidence 3210
Q ss_pred --------------------------------------------------------------------------------
Q 001991 355 -------------------------------------------------------------------------------- 354 (985)
Q Consensus 355 -------------------------------------------------------------------------------- 354 (985)
T Consensus 287 ~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa~~~~ 366 (510)
T KOG0144|consen 287 AQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAASLAN 366 (510)
T ss_pred ccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcccccccc
Confidence
Q ss_pred ----------------------------------------------------cccccccceeeecCCCCCCHHHHHHHhh
Q 001991 355 ----------------------------------------------------EKDANQGTLVVFNLDSSVSTEELHQIFG 382 (985)
Q Consensus 355 ----------------------------------------------------~~~~~~~tLfV~NLp~svTeedLrelFs 382 (985)
.+.....+|||.+||.+.-+.+|-..|.
T Consensus 367 lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~~~f~ 446 (510)
T KOG0144|consen 367 LQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLIATFQ 446 (510)
T ss_pred cccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHHHHhc
Confidence 0000124799999999999999999999
Q ss_pred ccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcc
Q 001991 383 IYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 383 ~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~ 436 (985)
.||.|++.++.-+ ++.|+||.|++..+|..||..|||..|+.++++|...+.+.
T Consensus 447 pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 447 PFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred cccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccC
Confidence 9999999776433 68899999999999999999999999999999999987654
No 28
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=9e-21 Score=214.11 Aligned_cols=161 Identities=20% Similarity=0.365 Sum_probs=144.6
Q ss_pred cEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001991 276 RTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 350 (985)
Q Consensus 276 rtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk 350 (985)
.||||++||+.++.++|.++|+.+|+|..+.+ +..+|||+||+|.-.+++++|++.+++..+.|+.|.|.++.++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999875 4568999999999999999999999999999999999998765
Q ss_pred CCCCc--------------------c--cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEE
Q 001991 351 DNPSE--------------------K--DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEF 404 (985)
Q Consensus 351 ~~~~~--------------------~--~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~----skGfaFVeF 404 (985)
....+ . +.+...|.|+|||+.+.+.+|+.+|+.||.|.+|.|+.. -.|||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 43210 0 123568999999999999999999999999999998754 358999999
Q ss_pred cCHHHHHHHHHHhCCceeCCceEEEEeccCcc
Q 001991 405 YDIRAAETALRTLNRSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 405 ~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~ 436 (985)
.+..+|.+|++.+|+.+|.||+|-|.||.++.
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 99999999999999999999999999998765
No 29
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.83 E-value=6.6e-21 Score=202.40 Aligned_cols=148 Identities=24% Similarity=0.410 Sum_probs=138.6
Q ss_pred cEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCc
Q 001991 276 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSE 355 (985)
Q Consensus 276 rtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~~~~ 355 (985)
-+|||+|||..+++.+|+.+|++||+|.+|++ -|.||||+.++...|+.||..|++..|+|..|.|+-++.|.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDI---vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs---- 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDI---VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS---- 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeee---ecccceEEeecccccHHHHhhcccceecceEEEEEeccccC----
Confidence 46999999999999999999999999999998 67799999999999999999999999999999999887653
Q ss_pred ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCc
Q 001991 356 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 435 (985)
Q Consensus 356 ~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k 435 (985)
....+|+|+||.+.++.++|+..|++||.|.+++|. ++|+||.|+-.++|..|++.|++++|.|++++|+.+..+
T Consensus 76 --k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv---kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 --KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV---KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred --CCccccccCCCCccccCHHHhhhhcccCCceeeeee---cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 346789999999999999999999999999999987 569999999999999999999999999999999998754
No 30
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.82 E-value=3.6e-20 Score=186.21 Aligned_cols=163 Identities=21% Similarity=0.313 Sum_probs=142.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 347 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a 347 (985)
....+|||+||+..++++.|.++|-+.|+|..+++ +...+|||||+|.++|+|+-|++-||...+.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 35689999999999999999999999999999975 6779999999999999999999999999999999999887
Q ss_pred CCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEE-EEc-----CCCCcEEEEEEcCHHHHHHHHHHhCCce
Q 001991 348 IPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREI-RDT-----QHKHNHKFIEFYDIRAAETALRTLNRSD 421 (985)
Q Consensus 348 ~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~V-ri~-----~~skGfaFVeF~d~edA~kAI~~LNG~~ 421 (985)
... ...-....+|||+||++.+++..|.+.|+.||.+... +++ +.+++||||.|.+.|.+.+|+..|||+.
T Consensus 87 s~~---~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~ 163 (203)
T KOG0131|consen 87 SAH---QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQY 163 (203)
T ss_pred ccc---cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccch
Confidence 621 1222334699999999999999999999999998662 322 3578899999999999999999999999
Q ss_pred eCCceEEEEeccCcchh
Q 001991 422 VAGKQIKLEASRPGGAR 438 (985)
Q Consensus 422 I~Gr~IkV~~A~~k~~R 438 (985)
+..++|.|.++..++.+
T Consensus 164 l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 164 LCNRPITVSYAFKKDTK 180 (203)
T ss_pred hcCCceEEEEEEecCCC
Confidence 99999999999866533
No 31
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=1.1e-18 Score=184.23 Aligned_cols=176 Identities=19% Similarity=0.313 Sum_probs=142.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCC
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 351 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~ 351 (985)
....|||||+||..+|||+-|..||.+.|.|..+++- |+ .|.|.++....
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i----------~~--------------------e~~v~wa~~p~ 52 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVI----------FD--------------------ELKVNWATAPG 52 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceee----------hh--------------------hhccccccCcc
Confidence 3467999999999999999999999999999999871 11 45666665544
Q ss_pred CCCccccc-ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCc
Q 001991 352 NPSEKDAN-QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGK 425 (985)
Q Consensus 352 ~~~~~~~~-~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr 425 (985)
........ .--+||+.|...++.++||+.|.+||+|.+++|+++ +||||||.|.+.++|+.||..|||..|++|
T Consensus 53 nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R 132 (321)
T KOG0148|consen 53 NQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRR 132 (321)
T ss_pred cCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccc
Confidence 43333333 347999999999999999999999999999998765 799999999999999999999999999999
Q ss_pred eEEEEeccCcchhh-hhhh-hhh-----hccCCCcc-cCCCCCCCcccc----ccccceEEEec
Q 001991 426 QIKLEASRPGGARR-FMVQ-SEQ-----EQDDLNLC-QIPFDDLSSGQM----VSSGVITSTCM 477 (985)
Q Consensus 426 ~IkV~~A~~k~~Rr-l~qq-~eq-----~q~e~nLy-kNlp~svt~e~L----~~fG~I~S~~~ 477 (985)
.|+-.||.+|..+. ..+. .++ ..+...+| .|++.-++++.| ++||.|..++.
T Consensus 133 ~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRv 196 (321)
T KOG0148|consen 133 TIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRV 196 (321)
T ss_pred eeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEE
Confidence 99999998776443 1111 222 22345778 999998888888 89999998854
No 32
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.76 E-value=1e-18 Score=197.10 Aligned_cols=161 Identities=17% Similarity=0.230 Sum_probs=125.6
Q ss_pred CCCcccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCC--hhhhhccCCCCeeeeecCCChhh
Q 001991 144 SSLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPD--EDDLFSGVTDDMGHNFQANTVDD 220 (985)
Q Consensus 144 Ssl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpd--edDL~sG~SkGfGFV~ff~t~Ed 220 (985)
+.-.+|||++|++ ++.++|++. |+. +|.|... ..|..++.++|||||+ |.+.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~l--------------F~~--------~G~V~~v~i~~d~~tg~srGyaFVe-F~~~e~ 161 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYAL--------------FRT--------IGPINTCRIMRDYKTGYSFGYAFVD-FGSEAD 161 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHH--------------HHh--------cCCEEEEEEEecCCCCccCcEEEEE-EccHHH
Confidence 4567899999998 888889888 843 4444331 1234578899999999 568888
Q ss_pred hhhhHHHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccC
Q 001991 221 LEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFG 300 (985)
Q Consensus 221 aee~~ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG 300 (985)
|+ +|+..++|.+|. ++.+.+..... . ......++|||+|||.++|+++|+++|++||
T Consensus 162 A~--~Ai~~LnG~~l~-gr~i~V~~a~p----------------~----~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG 218 (346)
T TIGR01659 162 SQ--RAIKNLNGITVR-NKRLKVSYARP----------------G----GESIKDTNLYVTNLPRTITDDQLDTIFGKYG 218 (346)
T ss_pred HH--HHHHHcCCCccC-Cceeeeecccc----------------c----ccccccceeEEeCCCCcccHHHHHHHHHhcC
Confidence 88 899999999997 44432221110 0 1122457899999999999999999999999
Q ss_pred cEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccc--ccccccccCCC
Q 001991 301 DIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSIPK 350 (985)
Q Consensus 301 ~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~G--r~L~V~~a~pk 350 (985)
+|..|++ +++++|||||+|.+.++|++||+.||+..+.+ ++|.|.++...
T Consensus 219 ~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 219 QIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred CEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 9998865 56788999999999999999999999998876 68888887654
No 33
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=2.5e-18 Score=186.53 Aligned_cols=161 Identities=19% Similarity=0.397 Sum_probs=141.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 348 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~ 348 (985)
--++|||+.|...+.|+.|+..|..||+|++|.+ ++++||||||+|+-+|.|+.|++.|||..++||.|+|....
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 3588999999999999999999999999999975 79999999999999999999999999999999999997432
Q ss_pred CCCCC-------CcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHH
Q 001991 349 PKDNP-------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRT 416 (985)
Q Consensus 349 pk~~~-------~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~ 416 (985)
.-... .+.......|||..+.++++++||+.+|+.||+|.+|.+-+. .+|||||+|.+..+-..||..
T Consensus 192 NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAias 271 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 271 (544)
T ss_pred CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhh
Confidence 11111 112234568999999999999999999999999999998543 589999999999999999999
Q ss_pred hCCceeCCceEEEEeccC
Q 001991 417 LNRSDVAGKQIKLEASRP 434 (985)
Q Consensus 417 LNG~~I~Gr~IkV~~A~~ 434 (985)
||-..++|..|+|..+..
T Consensus 272 MNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 272 MNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred cchhhcccceEecccccC
Confidence 999999999999987653
No 34
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=1.4e-17 Score=175.17 Aligned_cols=166 Identities=21% Similarity=0.402 Sum_probs=138.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCcc-ccc--ccccccc
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKP-LRR--RKLDIHY 346 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~-I~G--r~L~V~~ 346 (985)
..|+|||+-|...-.|||++.+|..||+|.+|.+ .+.+||+|||.|.+..+|+.||..|+|.. +.| ..|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 6799999999999999999999999999999976 67899999999999999999999999843 333 2344433
Q ss_pred cCCCCCC-------------------------------------------------------------------------
Q 001991 347 SIPKDNP------------------------------------------------------------------------- 353 (985)
Q Consensus 347 a~pk~~~------------------------------------------------------------------------- 353 (985)
+...+++
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 3211100
Q ss_pred --------------------------------------------------------------------------------
Q 001991 354 -------------------------------------------------------------------------------- 353 (985)
Q Consensus 354 -------------------------------------------------------------------------------- 353 (985)
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence
Q ss_pred ---------------------CcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEEcCH
Q 001991 354 ---------------------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDI 407 (985)
Q Consensus 354 ---------------------~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~-----~skGfaFVeF~d~ 407 (985)
.......++|||..||.+..+.||.++|-+||.|.+.++.- .+|+|+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 00112457999999999999999999999999999987753 4789999999999
Q ss_pred HHHHHHHHHhCCceeCCceEEEEeccCcchhh
Q 001991 408 RAAETALRTLNRSDVAGKQIKLEASRPGGARR 439 (985)
Q Consensus 408 edA~kAI~~LNG~~I~Gr~IkV~~A~~k~~Rr 439 (985)
.+|+.||.+|||..|+-|+|+|.+.+||++.|
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 99999999999999999999999999987543
No 35
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.71 E-value=2.2e-17 Score=192.34 Aligned_cols=162 Identities=24% Similarity=0.433 Sum_probs=141.6
Q ss_pred cEEEEecCCCCCCHHHHHHhhcccCcEEEEEecc--------ccceEEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001991 276 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC--------KHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 347 (985)
Q Consensus 276 rtLfVgNLP~~vTEedLrelFs~fG~I~sVkitg--------ksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a 347 (985)
++|||+||+.+.|.++|..+|...|.|.++.|.. .+.|||||+|.+.++|+.|++.|+|..|+|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 3499999999999999999999999999997621 13499999999999999999999999999999999998
Q ss_pred CCCCCC-----CcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHh
Q 001991 348 IPKDNP-----SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTL 417 (985)
Q Consensus 348 ~pk~~~-----~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~L 417 (985)
..+... .......+.|.|+|||...+..+++++|..||.|.+|+++.. .+|||||+|-++++|.+|+.+|
T Consensus 596 ~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 596 ENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred cCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhh
Confidence 722211 011122468999999999999999999999999999999764 4789999999999999999999
Q ss_pred CCceeCCceEEEEeccCcch
Q 001991 418 NRSDVAGKQIKLEASRPGGA 437 (985)
Q Consensus 418 NG~~I~Gr~IkV~~A~~k~~ 437 (985)
..+.+.||+|.++|+.....
T Consensus 676 ~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 676 GSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred cccceechhhheehhccchH
Confidence 99999999999999987664
No 36
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.71 E-value=2e-17 Score=188.71 Aligned_cols=234 Identities=19% Similarity=0.250 Sum_probs=160.3
Q ss_pred eEecCcCC--ChhhhhccCCCCeeeeecCCChhhhhhhHHHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCC
Q 001991 189 QTIGNLLP--DEDDLFSGVTDDMGHNFQANTVDDLEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVG 266 (985)
Q Consensus 189 ~~iGnILp--dedDL~sG~SkGfGFV~ff~t~Edaee~~ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~ 266 (985)
+.+|.+-+ ---|-.++.+||.+||+|. +.+.+- -+| ...|..|-|-+ +.+ .++...+|...+.+. .-
T Consensus 201 s~~gkVrdVriI~Dr~s~rskgi~Yvef~-D~~sVp--~ai-aLsGqrllg~p-v~v-----q~sEaeknr~a~~s~-a~ 269 (549)
T KOG0147|consen 201 SIVGKVRDVRIIGDRNSRRSKGIAYVEFC-DEQSVP--LAI-ALSGQRLLGVP-VIV-----QLSEAEKNRAANASP-AL 269 (549)
T ss_pred HhhcCcceeEeeccccchhhcceeEEEEe-cccchh--hHh-hhcCCcccCce-eEe-----cccHHHHHHHHhccc-cc
Confidence 55555444 1123357889999999966 444444 234 33444333222 111 111111221111000 00
Q ss_pred CCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccc
Q 001991 267 EHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK 341 (985)
Q Consensus 267 e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~ 341 (985)
+...-..|.+.|||+||-.++++++|+.+|+.||.|..|.+ ++.++||+||+|.+.++|++|++.|||.+|.|+.
T Consensus 270 ~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ 349 (549)
T KOG0147|consen 270 QGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRL 349 (549)
T ss_pred cccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCce
Confidence 10112234445999999999999999999999999999864 6889999999999999999999999999999999
Q ss_pred ccccccCCCCCC--------------------------------------------------------------------
Q 001991 342 LDIHYSIPKDNP-------------------------------------------------------------------- 353 (985)
Q Consensus 342 L~V~~a~pk~~~-------------------------------------------------------------------- 353 (985)
|+|.....+...
T Consensus 350 ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~ 429 (549)
T KOG0147|consen 350 IKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRS 429 (549)
T ss_pred EEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccc
Confidence 988432111000
Q ss_pred Cccc-------ccccceeeecC--CCCCC--------HHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHH
Q 001991 354 SEKD-------ANQGTLVVFNL--DSSVS--------TEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRT 416 (985)
Q Consensus 354 ~~~~-------~~~~tLfV~NL--p~svT--------eedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~ 416 (985)
..+. ....++.++|+ |...| .+++.+.+.+||+|..|.+.+++-|+.||.|.+.++|..|+++
T Consensus 430 ~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~a 509 (549)
T KOG0147|consen 430 VDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKA 509 (549)
T ss_pred cCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHH
Confidence 0000 22334556665 22222 3788899999999999999999889999999999999999999
Q ss_pred hCCceeCCceEEEEecc
Q 001991 417 LNRSDVAGKQIKLEASR 433 (985)
Q Consensus 417 LNG~~I~Gr~IkV~~A~ 433 (985)
|||.+|.||.|++.|-.
T Consensus 510 lhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 510 LHGRWFAGRMITAKYLP 526 (549)
T ss_pred HhhhhhccceeEEEEee
Confidence 99999999999999854
No 37
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.70 E-value=1.7e-16 Score=165.30 Aligned_cols=163 Identities=26% Similarity=0.454 Sum_probs=144.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHH----hhcccCcEEEEEe--ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKA----LFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLre----lFs~fG~I~sVki--tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
...+..||||.||+..+..++|++ +|++||.|..|.. +.+.||.|||.|.+.+.|-.|++.|+|..+.|+.++|
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344666999999999999999998 9999999999976 6889999999999999999999999999999999999
Q ss_pred cccCCCCCCCcc----------------------------------------------cccccceeeecCCCCCCHHHHH
Q 001991 345 HYSIPKDNPSEK----------------------------------------------DANQGTLVVFNLDSSVSTEELH 378 (985)
Q Consensus 345 ~~a~pk~~~~~~----------------------------------------------~~~~~tLfV~NLp~svTeedLr 378 (985)
+||..+.+...+ ..+...|++.|||..++.+.|.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 999765431100 2234589999999999999999
Q ss_pred HHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeC-CceEEEEecc
Q 001991 379 QIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVA-GKQIKLEASR 433 (985)
Q Consensus 379 elFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~-Gr~IkV~~A~ 433 (985)
.+|.+|...++|+++...++.|||+|.+...|..|...+.+..|. ...++|.+++
T Consensus 165 ~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999999988999999999999999999999999987 8888888775
No 38
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=3e-16 Score=170.59 Aligned_cols=254 Identities=14% Similarity=0.279 Sum_probs=184.4
Q ss_pred CCcccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCC--ChhhhhccCCCCeeeeecCCChhhh
Q 001991 145 SLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLP--DEDDLFSGVTDDMGHNFQANTVDDL 221 (985)
Q Consensus 145 sl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILp--dedDL~sG~SkGfGFV~ff~t~Eda 221 (985)
-+..|+|+.+.. +-++.+... | ..||-|-+ --=|..++..|||+||+ ++-.|++
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~A--------------F--------~PFGPIKSInMSWDp~T~kHKgFAFVE-YEvPEaA 168 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRA--------------F--------DPFGPIKSINMSWDPATGKHKGFAFVE-YEVPEAA 168 (544)
T ss_pred HhHheeeeeeEEEechHHHHhh--------------c--------cCCCCcceeecccccccccccceEEEE-EeCcHHH
Confidence 345677877776 555455544 4 34454444 11344689999999999 5688888
Q ss_pred hhhHHHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCc
Q 001991 222 EDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGD 301 (985)
Q Consensus 222 ee~~ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~ 301 (985)
. -+.+.+||..|. .+.+.+++-.. .... -.+-.+...+.+...+|||..+-++.+|+||+..|+.||+
T Consensus 169 q--LAlEqMNg~mlG-GRNiKVgrPsN--------mpQA-QpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~ 236 (544)
T KOG0124|consen 169 Q--LALEQMNGQMLG-GRNIKVGRPSN--------MPQA-QPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE 236 (544)
T ss_pred H--HHHHHhcccccc-CccccccCCCC--------Cccc-chHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcc
Confidence 8 899999999996 66665554211 0000 0000011123456789999999999999999999999999
Q ss_pred EEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCC------------------------
Q 001991 302 IRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN------------------------ 352 (985)
Q Consensus 302 I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~------------------------ 352 (985)
|..|++ .+.+|||+||+|.+..+-..|+..||-..++|.-|+|..+.....
T Consensus 237 I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTA 316 (544)
T KOG0124|consen 237 IVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATA 316 (544)
T ss_pred eeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHH
Confidence 999986 467999999999999999999999999999999888843211000
Q ss_pred --------------------------------------------------------C-----------------------
Q 001991 353 --------------------------------------------------------P----------------------- 353 (985)
Q Consensus 353 --------------------------------------------------------~----------------------- 353 (985)
+
T Consensus 317 Ki~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g 396 (544)
T KOG0124|consen 317 KIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLG 396 (544)
T ss_pred HHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchh
Confidence 0
Q ss_pred -----Cc--------------------------------------ccccccceeeecC--CCCCC---HHHHHHHhhccC
Q 001991 354 -----SE--------------------------------------KDANQGTLVVFNL--DSSVS---TEELHQIFGIYG 385 (985)
Q Consensus 354 -----~~--------------------------------------~~~~~~tLfV~NL--p~svT---eedLrelFs~fG 385 (985)
.+ +....+.+.++|+ |.+++ +.+|.+.|++||
T Consensus 397 ~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG 476 (544)
T KOG0124|consen 397 LLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFG 476 (544)
T ss_pred hcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhccc
Confidence 00 0012356788887 55665 578999999999
Q ss_pred CEEEEEEcCCCCc---------EEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecc
Q 001991 386 EIREIRDTQHKHN---------HKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 433 (985)
Q Consensus 386 ~I~~Vri~~~skG---------faFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~ 433 (985)
.|.+|.|.....+ .-||+|....++.+|+++|+|+.|+|+++..+...
T Consensus 477 ~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~YD 533 (544)
T KOG0124|consen 477 AVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAEVYD 533 (544)
T ss_pred ceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceeehhhhh
Confidence 9999887654322 36999999999999999999999999999887654
No 39
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.61 E-value=1.2e-15 Score=168.66 Aligned_cols=163 Identities=15% Similarity=0.342 Sum_probs=144.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 348 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~ 348 (985)
..++|||++|+++++++.|++.|.+||+|..|.+ +++++||+||+|++.+...+++. .....|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 6789999999999999999999999999999875 68899999999999999999984 56678999999999998
Q ss_pred CCCCCCcccc--cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEEcCHHHHHHHHHHhCCce
Q 001991 349 PKDNPSEKDA--NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSD 421 (985)
Q Consensus 349 pk~~~~~~~~--~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~-----~skGfaFVeF~d~edA~kAI~~LNG~~ 421 (985)
++....+... ...+|||+.||.+++++++++.|.+||.|..+.++- +.++|+||.|++++++.+++. ..-..
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 8876644332 356899999999999999999999999998876653 368999999999999999987 78889
Q ss_pred eCCceEEEEeccCcchh
Q 001991 422 VAGKQIKLEASRPGGAR 438 (985)
Q Consensus 422 I~Gr~IkV~~A~~k~~R 438 (985)
|.|+.+.|..|.|++..
T Consensus 163 ~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVM 179 (311)
T ss_pred ecCceeeEeeccchhhc
Confidence 99999999999997744
No 40
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.59 E-value=7.6e-13 Score=147.18 Aligned_cols=160 Identities=21% Similarity=0.375 Sum_probs=132.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhc-ccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001991 274 PSRTLFVRNINSNVEDSELKALFE-QFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 348 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs-~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~ 348 (985)
..|.+||.|||+++...+|+++|. +.|+|..|.+ .+|.||+|.|+|+++|.+++|++.||...+.||+|.|+-..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 457799999999999999999997 7899999975 79999999999999999999999999999999999984221
Q ss_pred CC----------------------------------------------C-CCCc--------------------------
Q 001991 349 PK----------------------------------------------D-NPSE-------------------------- 355 (985)
Q Consensus 349 pk----------------------------------------------~-~~~~-------------------------- 355 (985)
.. + ++..
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 10 0 0000
Q ss_pred --------ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEE----cCCCCcEEEEEEcCHHHHHHHHHHhCCceeC
Q 001991 356 --------KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD----TQHKHNHKFIEFYDIRAAETALRTLNRSDVA 423 (985)
Q Consensus 356 --------~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri----~~~skGfaFVeF~d~edA~kAI~~LNG~~I~ 423 (985)
..+....+||.||+..+..+.|++.|.-.|+|..|.+ ...++|++.++|..+-+|-.||..|++.-+.
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 0012347899999999999999999999999988754 3457899999999999999999999988888
Q ss_pred CceEEEEecc
Q 001991 424 GKQIKLEASR 433 (985)
Q Consensus 424 Gr~IkV~~A~ 433 (985)
.++..+.+.+
T Consensus 283 ~~~~~~Rl~~ 292 (608)
T KOG4212|consen 283 DRRMTVRLDR 292 (608)
T ss_pred cccceeeccc
Confidence 8887777643
No 41
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=5.7e-15 Score=172.53 Aligned_cols=208 Identities=20% Similarity=0.330 Sum_probs=161.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCC-
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP- 349 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~p- 349 (985)
.+...+.++|+|||..+..++|..+|..||+|..+.+. ..---|+|+|.+..+|++|++.|....+...++++.++..
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp-~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~d 459 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP-PGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPED 459 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC-cccceeeeeecCccchHHHHHHhchhhhccCccccccChhh
Confidence 45566899999999999999999999999999999663 2223599999999999999999999999888888866521
Q ss_pred ------CCC-------------CC------------ccc-------------c-cccceeeecCCCCCCHHHHHHHhhcc
Q 001991 350 ------KDN-------------PS------------EKD-------------A-NQGTLVVFNLDSSVSTEELHQIFGIY 384 (985)
Q Consensus 350 ------k~~-------------~~------------~~~-------------~-~~~tLfV~NLp~svTeedLrelFs~f 384 (985)
+.. +. ..+ . ..++|||+||+.+++.++|..+|..+
T Consensus 460 vf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~ 539 (725)
T KOG0110|consen 460 VFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQ 539 (725)
T ss_pred hccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhc
Confidence 100 00 000 0 12249999999999999999999999
Q ss_pred CCEEEEEEcCC--------CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcchhhhhhhhhhhccCCCcc-c
Q 001991 385 GEIREIRDTQH--------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLC-Q 455 (985)
Q Consensus 385 G~I~~Vri~~~--------skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~~Rrl~qq~eq~q~e~nLy-k 455 (985)
|.|.++.|... +.|||||+|.+.++|+.|++.|+|+.|.|+.|.|.++..+..-..-.+....+.-..|. +
T Consensus 540 G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVR 619 (725)
T KOG0110|consen 540 GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVR 619 (725)
T ss_pred CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeee
Confidence 99999977543 34999999999999999999999999999999999998333222111111111123444 9
Q ss_pred CCCCCCCcccc----ccccceEEEecCC
Q 001991 456 IPFDDLSSGQM----VSSGVITSTCMDN 479 (985)
Q Consensus 456 Nlp~svt~e~L----~~fG~I~S~~~en 479 (985)
|+|...+-..+ .+||+|.+++...
T Consensus 620 NipFeAt~rEVr~LF~aFGqlksvRlPK 647 (725)
T KOG0110|consen 620 NIPFEATKREVRKLFTAFGQLKSVRLPK 647 (725)
T ss_pred ccchHHHHHHHHHHHhcccceeeeccch
Confidence 99999887776 8999999995543
No 42
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.59 E-value=8.1e-16 Score=175.65 Aligned_cols=164 Identities=23% Similarity=0.362 Sum_probs=142.0
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
.++...++||+--|...++..+|.++|+.+|+|..|.+ ++.++|.|||+|.|.+....|| .|.|+.+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEe
Confidence 46677899999999999999999999999999999965 6779999999999999999999 69999999999999
Q ss_pred cccCCCCCCCc----------ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHH
Q 001991 345 HYSIPKDNPSE----------KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRA 409 (985)
Q Consensus 345 ~~a~pk~~~~~----------~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~ed 409 (985)
+......+... -..+-..|||+||...+++++|+.+|++||.|..|.++.+ .+|||||+|.+.++
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 87654332210 0112223999999999999999999999999999988655 68999999999999
Q ss_pred HHHHHHHhCCceeCCceEEEEeccC
Q 001991 410 AETALRTLNRSDVAGKQIKLEASRP 434 (985)
Q Consensus 410 A~kAI~~LNG~~I~Gr~IkV~~A~~ 434 (985)
|.+|+..|||.+|.|+.|+|..-..
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeee
Confidence 9999999999999999999987543
No 43
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.8e-14 Score=145.32 Aligned_cols=149 Identities=19% Similarity=0.296 Sum_probs=127.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccc--cceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACK--HRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 350 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgk--srGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk 350 (985)
..+++|||+|||.++-+.+|.++|-+||.|..|.+... .-.||||+|++..+|+.||..-+|..+.|..|+|+++..-
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 35689999999999999999999999999999987433 3469999999999999999999999999999999987543
Q ss_pred CCC----------------------CcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHH
Q 001991 351 DNP----------------------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIR 408 (985)
Q Consensus 351 ~~~----------------------~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~e 408 (985)
... +.....+..|.|.+||++-++++|+++..+-|.|....+.++ +++.|+|...|
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD--g~GvV~~~r~e 161 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD--GVGVVEYLRKE 161 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc--cceeeeeeehh
Confidence 210 111224458999999999999999999999999998887764 69999999999
Q ss_pred HHHHHHHHhCCceeC
Q 001991 409 AAETALRTLNRSDVA 423 (985)
Q Consensus 409 dA~kAI~~LNG~~I~ 423 (985)
+.+-|++.|....+.
T Consensus 162 DMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 162 DMKYAVRKLDDQKFR 176 (241)
T ss_pred hHHHHHHhhcccccc
Confidence 999999988776553
No 44
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.55 E-value=2.4e-15 Score=160.45 Aligned_cols=149 Identities=18% Similarity=0.326 Sum_probs=123.4
Q ss_pred cccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhH
Q 001991 147 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFD 225 (985)
Q Consensus 147 ~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~ff~t~Edaee~~ 225 (985)
.+|||+||+. .+..+|... | +.+|.+|-++ +-|.||||+ -++.++++ +
T Consensus 3 ~KLFIGNLp~~~~~~elr~l--------------F--------e~ygkVlECD------IvKNYgFVH-iEdktaae--d 51 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSL--------------F--------EQYGKVLECD------IVKNYGFVH-IEDKTAAE--D 51 (346)
T ss_pred cchhccCCCcccchHHHHHH--------------H--------HhhCceEeee------eecccceEE-eecccccH--H
Confidence 4799999987 777666655 7 7788887754 367899999 56677767 8
Q ss_pred HHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEE
Q 001991 226 LFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI 305 (985)
Q Consensus 226 ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV 305 (985)
+|.+++|+.|+ ...+.|+..++ ..+.+++|+|+||.+.++.+||++.|++||+|..|
T Consensus 52 airNLhgYtLh-g~nInVeaSks----------------------Ksk~stkl~vgNis~tctn~ElRa~fe~ygpviec 108 (346)
T KOG0109|consen 52 AIRNLHGYTLH-GVNINVEASKS----------------------KSKASTKLHVGNISPTCTNQELRAKFEKYGPVIEC 108 (346)
T ss_pred HHhhcccceec-ceEEEEEeccc----------------------cCCCccccccCCCCccccCHHHhhhhcccCCceee
Confidence 99999999998 43433332211 23578999999999999999999999999999999
Q ss_pred EeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCC
Q 001991 306 YTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 352 (985)
Q Consensus 306 kitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~ 352 (985)
++ -++|+||.|.-.++|..|++.|++.++.|+++.|+.+..+-.
T Consensus 109 di---vkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 109 DI---VKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 152 (346)
T ss_pred ee---ecceeEEEEeeccchHHHHhcccccccccceeeeeeeccccc
Confidence 98 788999999999999999999999999999999999876543
No 45
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=9.2e-14 Score=146.01 Aligned_cols=150 Identities=23% Similarity=0.400 Sum_probs=130.5
Q ss_pred cEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCC--
Q 001991 276 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP-- 353 (985)
Q Consensus 276 rtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~~-- 353 (985)
..|||++||+.+.+.+|.++|..||.|..+.+ ..||+||+|.+..+|..|+..+++++|.|..+.|.++......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g 78 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRG 78 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee---ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccC
Confidence 46899999999999999999999999999988 5679999999999999999999999999999999888743110
Q ss_pred --------------CcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCC
Q 001991 354 --------------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNR 419 (985)
Q Consensus 354 --------------~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG 419 (985)
.......+.|.|.|+...+.+.+|.+.|.++|.+..... ..+++||+|...++|.+|+..|++
T Consensus 79 ~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~ 155 (216)
T KOG0106|consen 79 RPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDG 155 (216)
T ss_pred CCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccc
Confidence 011234557899999999999999999999999965544 578999999999999999999999
Q ss_pred ceeCCceEEEEe
Q 001991 420 SDVAGKQIKLEA 431 (985)
Q Consensus 420 ~~I~Gr~IkV~~ 431 (985)
..+.++.|.+..
T Consensus 156 ~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 156 KKLNGRRISVEK 167 (216)
T ss_pred hhhcCceeeecc
Confidence 999999999943
No 46
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.41 E-value=3.6e-12 Score=141.85 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=67.5
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 360 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 360 ~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
.++|+|+|||.++|+..|++-|..||.|.++.|+...+..+.|.|.++++|++|++.|||..+.|+.|+|.+.
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 3689999999999999999999999999999987666666799999999999999999999999999999874
No 47
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.41 E-value=3.1e-12 Score=139.77 Aligned_cols=165 Identities=16% Similarity=0.248 Sum_probs=135.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEE--------EEe----ccccceEEEEEeCCHHHHHHHHHHccCcccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT--------IYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLR 338 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~s--------Vki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~ 338 (985)
.....+.|||.|||.++|.+++.++|++||-|.. |++ .|+.+|=|.+.|-..+++..|++.|++..|.
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 4556788999999999999999999999998864 232 5888999999999999999999999999999
Q ss_pred cccccccccCCCCC----------------------------------CCcccccccceeeecCC----CCCC-------
Q 001991 339 RRKLDIHYSIPKDN----------------------------------PSEKDANQGTLVVFNLD----SSVS------- 373 (985)
Q Consensus 339 Gr~L~V~~a~pk~~----------------------------------~~~~~~~~~tLfV~NLp----~svT------- 373 (985)
|++|+|+.|+-... ...+....++|.++|+= ...+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 99999976632100 01112345689999982 1222
Q ss_pred HHHHHHHhhccCCEEEEEEc-CCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCc
Q 001991 374 TEELHQIFGIYGEIREIRDT-QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 435 (985)
Q Consensus 374 eedLrelFs~fG~I~~Vri~-~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k 435 (985)
+++|++-+++||.|..|.+. .++.|.+-|.|.+.++|..+|+.|+|+.|+||.|..+...-+
T Consensus 290 kedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 57888999999999998876 457899999999999999999999999999999999887543
No 48
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.39 E-value=1.4e-12 Score=130.56 Aligned_cols=82 Identities=23% Similarity=0.416 Sum_probs=74.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
....+++|||+|||+++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999876 56789999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 001991 346 YSIPKDN 352 (985)
Q Consensus 346 ~a~pk~~ 352 (985)
++.++..
T Consensus 110 ~a~~~~~ 116 (144)
T PLN03134 110 PANDRPS 116 (144)
T ss_pred eCCcCCC
Confidence 9876544
No 49
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.38 E-value=1.8e-12 Score=129.68 Aligned_cols=78 Identities=17% Similarity=0.350 Sum_probs=71.9
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecc
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 433 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~ 433 (985)
..++|||+|||..+++++|+++|++||.|.+|+++.+ +++||||+|.+.++|++|++.||+..|.|++|+|+++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 4568999999999999999999999999999988643 58999999999999999999999999999999999997
Q ss_pred Ccc
Q 001991 434 PGG 436 (985)
Q Consensus 434 ~k~ 436 (985)
++.
T Consensus 113 ~~~ 115 (144)
T PLN03134 113 DRP 115 (144)
T ss_pred cCC
Confidence 644
No 50
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.36 E-value=3.1e-13 Score=136.64 Aligned_cols=164 Identities=18% Similarity=0.280 Sum_probs=125.2
Q ss_pred CCcccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCC---ChhhhhccCCCCeeeeecCCChhh
Q 001991 145 SLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLP---DEDDLFSGVTDDMGHNFQANTVDD 220 (985)
Q Consensus 145 sl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILp---dedDL~sG~SkGfGFV~ff~t~Ed 220 (985)
+-..||++||+. ++..-||+. | -..|-++. .+ |..+...+|||||+ |.++|+
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL--------------~--------iqagpVv~i~iPk-Drv~~~~qGygF~E-f~~eed 63 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYEL--------------F--------IQAGPVVNLHIPK-DRVTQKHQGYGFAE-FRTEED 63 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHH--------------H--------HhcCceeeeecch-hhhcccccceeEEE-Eechhh
Confidence 445799999986 776677776 6 33443333 23 33355689999999 668899
Q ss_pred hhhhHHHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccC
Q 001991 221 LEDFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFG 300 (985)
Q Consensus 221 aee~~ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG 300 (985)
++ .++.-+|+..|. ++.+.+.++- .....-....+|||+||.+.++|..|.+.|+.||
T Consensus 64 ad--YAikiln~VkLY-grpIrv~kas-------------------~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG 121 (203)
T KOG0131|consen 64 AD--YAIKILNMVKLY-GRPIRVNKAS-------------------AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFG 121 (203)
T ss_pred hH--HHHHHHHHHHhc-CceeEEEecc-------------------cccccccccccccccccCcchhHHHHHHHHHhcc
Confidence 89 899999988888 4333222211 1112223448999999999999999999999999
Q ss_pred cEEEE------EeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCC
Q 001991 301 DIRTI------YTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPS 354 (985)
Q Consensus 301 ~I~sV------kitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~~~ 354 (985)
.|... ..++..+|||||.|.+.|.+.+|++.+||+.+..+++.|.|+..+....
T Consensus 122 ~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 122 VLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred ccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 88763 1368999999999999999999999999999999999999998766543
No 51
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.30 E-value=1.9e-11 Score=135.71 Aligned_cols=160 Identities=23% Similarity=0.303 Sum_probs=136.6
Q ss_pred CcEEEEecCCCC-CCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCC
Q 001991 275 SRTLFVRNINSN-VEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP 353 (985)
Q Consensus 275 srtLfVgNLP~~-vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~~ 353 (985)
+..|.|.||.+. ||.+.|..+|..||+|..|++-.+.+.-|.|+|.|...|+-|++.|+|..+.|++|+|.+++...-.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 578999999765 8999999999999999999986666789999999999999999999999999999999887643210
Q ss_pred ------Cc-------------------------ccccccceeeecCCCCCCHHHHHHHhhccCCE-EEEEEcCCCCcEEE
Q 001991 354 ------SE-------------------------KDANQGTLVVFNLDSSVSTEELHQIFGIYGEI-REIRDTQHKHNHKF 401 (985)
Q Consensus 354 ------~~-------------------------~~~~~~tLfV~NLp~svTeedLrelFs~fG~I-~~Vri~~~skGfaF 401 (985)
.. -..+..+|.+.|+|.++++|+|+++|..-|.. +-.+..++.+.+++
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal 456 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMAL 456 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceee
Confidence 00 01234589999999999999999999998865 44566666788999
Q ss_pred EEEcCHHHHHHHHHHhCCceeCC-ceEEEEeccC
Q 001991 402 IEFYDIRAAETALRTLNRSDVAG-KQIKLEASRP 434 (985)
Q Consensus 402 VeF~d~edA~kAI~~LNG~~I~G-r~IkV~~A~~ 434 (985)
+.+.++|+|..|+..++...+++ ..|+|.|++.
T Consensus 457 ~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 457 PQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999999999975 5999999875
No 52
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.30 E-value=1.1e-11 Score=128.53 Aligned_cols=150 Identities=23% Similarity=0.321 Sum_probs=117.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEE--Eecccc----ceEEEEEeCCHHHHHHHHHHccCcccc---ccccc
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTI--YTACKH----RGFVMISYYDIRAARNAMKALQNKPLR---RRKLD 343 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV--kitgks----rGfAFV~F~d~esA~kAi~~Lng~~I~---Gr~L~ 343 (985)
..-|||||.+||.++...||+.+|..|--.+.+ +.+.+. +-+|||+|.+...|..|+.+|||..|+ +..|.
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 346999999999999999999999998766554 444433 369999999999999999999999886 55666
Q ss_pred ccccCCCCCC---------------------------------------------------Cccc---------------
Q 001991 344 IHYSIPKDNP---------------------------------------------------SEKD--------------- 357 (985)
Q Consensus 344 V~~a~pk~~~---------------------------------------------------~~~~--------------- 357 (985)
|++++..... .+.+
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 6655321100 0000
Q ss_pred ----------------ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-CCcEEEEEEcCHHHHHHHHHHhCCc
Q 001991 358 ----------------ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-KHNHKFIEFYDIRAAETALRTLNRS 420 (985)
Q Consensus 358 ----------------~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-skGfaFVeF~d~edA~kAI~~LNG~ 420 (985)
....||||.||...+++++|+++|+.|-....++|..+ ....|||+|++.+.|..|+..|.|.
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~ 271 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGN 271 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcc
Confidence 01238999999999999999999999987776666433 3457999999999999999999998
Q ss_pred ee
Q 001991 421 DV 422 (985)
Q Consensus 421 ~I 422 (985)
.|
T Consensus 272 ~~ 273 (284)
T KOG1457|consen 272 LL 273 (284)
T ss_pred ee
Confidence 76
No 53
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.29 E-value=5.1e-11 Score=132.36 Aligned_cols=163 Identities=25% Similarity=0.405 Sum_probs=132.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccce-EEEEEeCCHHHHHHHHHHccCccccc--ccccccccC--
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRG-FVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSI-- 348 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrG-fAFV~F~d~esA~kAi~~Lng~~I~G--r~L~V~~a~-- 348 (985)
+--.++|.|+-.-|+-+-|..+|++||.|..|.+-.|..| .|.|+|.+.+.|+.|...|+|+-|.. ..|+|.|++
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt 228 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLT 228 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcc
Confidence 3456788999999999999999999999999876455555 59999999999999999999988754 355554432
Q ss_pred --------CCCCC-------Cc----------------------------------------cccc--ccceeeecCC-C
Q 001991 349 --------PKDNP-------SE----------------------------------------KDAN--QGTLVVFNLD-S 370 (985)
Q Consensus 349 --------pk~~~-------~~----------------------------------------~~~~--~~tLfV~NLp-~ 370 (985)
.|... .. .... ...|.|.||. .
T Consensus 229 ~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~ 308 (492)
T KOG1190|consen 229 DLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEE 308 (492)
T ss_pred cceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchh
Confidence 11110 00 0001 3578888885 5
Q ss_pred CCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcc
Q 001991 371 SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 371 svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~ 436 (985)
.+|.+.|..+|+.||+|.+|+|..+++..|.|+|.|...|+-|+..|+|..+.||+|+|.+++...
T Consensus 309 ~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 309 AVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 789999999999999999999998888999999999999999999999999999999999997543
No 54
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=2.6e-11 Score=140.72 Aligned_cols=164 Identities=17% Similarity=0.330 Sum_probs=132.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
.......+||++||..+++.+++++...||++....+ ++.++||||.+|.+......|+..|||+.+.+++|.|+
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq 364 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQ 364 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEee
Confidence 3445689999999999999999999999999987653 57899999999999999999999999999999999998
Q ss_pred ccCCCCCCCc--------------------ccccccceeeecC--CCCC-C-------HHHHHHHhhccCCEEEEEEcCC
Q 001991 346 YSIPKDNPSE--------------------KDANQGTLVVFNL--DSSV-S-------TEELHQIFGIYGEIREIRDTQH 395 (985)
Q Consensus 346 ~a~pk~~~~~--------------------~~~~~~tLfV~NL--p~sv-T-------eedLrelFs~fG~I~~Vri~~~ 395 (985)
.+.+...... .......|.+.|+ +.++ + -|+++..|.+||.|..|.+...
T Consensus 365 ~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~ 444 (500)
T KOG0120|consen 365 RAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRP 444 (500)
T ss_pred hhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCC
Confidence 8765432211 1122334555554 1111 1 1567788899999999988654
Q ss_pred --------CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 001991 396 --------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 434 (985)
Q Consensus 396 --------skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~ 434 (985)
..|..||+|.+.+++++|.++|+|.+|.|++|...|...
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 356789999999999999999999999999999999864
No 55
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.28 E-value=9.4e-12 Score=106.63 Aligned_cols=66 Identities=35% Similarity=0.563 Sum_probs=62.1
Q ss_pred eeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEE
Q 001991 363 LVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 428 (985)
Q Consensus 363 LfV~NLp~svTeedLrelFs~fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~Ik 428 (985)
|||+|||.++++++|+++|++||.|..+.+..+ .+++|||+|.+.++|++|++.|+|..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999988763 578999999999999999999999999999986
No 56
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.25 E-value=1.4e-11 Score=105.56 Aligned_cols=66 Identities=30% Similarity=0.616 Sum_probs=61.7
Q ss_pred EEEecCCCCCCHHHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCccccccccc
Q 001991 278 LFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 343 (985)
Q Consensus 278 LfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~ 343 (985)
|||+|||+++++++|+++|++||.|..+++ .+..+++|||+|.+.++|++|++.|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999998876 356899999999999999999999999999998874
No 57
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.23 E-value=5.1e-11 Score=124.44 Aligned_cols=121 Identities=28% Similarity=0.447 Sum_probs=103.4
Q ss_pred CcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001991 275 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 349 (985)
Q Consensus 275 srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~p 349 (985)
.++|||+|||.++++++|+++|.+||.|..+.+ +++.+|||||+|.+.++|..|++.+++..|.|++|.|.+..+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 799999999999999999999999999988764 578999999999999999999999999999999999999542
Q ss_pred ----CCCCC----------------cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC
Q 001991 350 ----KDNPS----------------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH 395 (985)
Q Consensus 350 ----k~~~~----------------~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~ 395 (985)
+.... ........+++.+++..++..++...|..+|.+..+.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 22211 01123458999999999999999999999999977766543
No 58
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.23 E-value=1.1e-11 Score=137.49 Aligned_cols=204 Identities=16% Similarity=0.259 Sum_probs=130.4
Q ss_pred CCcccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhh
Q 001991 145 SLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLED 223 (985)
Q Consensus 145 sl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~ff~t~Edaee 223 (985)
...+||+++|+| ++.+.|.+. |.++.|+...++ ..|..++.++|||||.|. +.+.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~y--------------f~~~Gev~d~~v------m~d~~t~rsrgFgfv~f~-~~~~v~- 62 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREY--------------FSQFGEVTDCVV------MRDPSTGRSRGFGFVTFA-TPEGVD- 62 (311)
T ss_pred CCcceeecCcCccccHHHHHHH--------------hcccCceeeEEE------eccCCCCCcccccceecC-CCcchh-
Confidence 456899999999 888889988 744443322222 245567999999999965 333333
Q ss_pred hHHHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEE
Q 001991 224 FDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIR 303 (985)
Q Consensus 224 ~~ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~ 303 (985)
.++. ..-..|+ .+.+.+.++.+ ..............+|||++||.+++++++++.|++||.|.
T Consensus 63 -~vl~-~~~h~~d-gr~ve~k~av~--------------r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~ 125 (311)
T KOG4205|consen 63 -AVLN-ARTHKLD-GRSVEPKRAVS--------------REDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVA 125 (311)
T ss_pred -eeec-ccccccC-CccccceeccC--------------cccccccccccceeEEEecCcCCCCchHHHhhhhhccceeE
Confidence 1111 1111222 11111111111 11111122233678999999999999999999999999888
Q ss_pred EEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCcccccc-cceeeecCCCCCCHHHH
Q 001991 304 TIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQ-GTLVVFNLDSSVSTEEL 377 (985)
Q Consensus 304 sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~~~~~~~~~-~tLfV~NLp~svTeedL 377 (985)
.+.+ +.+.+||+||.|.+.+++++++. .....|.++.+.|..|.|+.......... ...+..|+....+.-.|
T Consensus 126 ~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~~~~~~~~~~~~~~~~g~~~~~~~l 204 (311)
T KOG4205|consen 126 DVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQSTKSSVSTRGKGNNLGNGRTGFFL 204 (311)
T ss_pred eeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccchhhcccccccccccccccccccccccccc
Confidence 7643 67789999999999999999984 77889999999999999987653222111 12222244444444445
Q ss_pred HHHhhccCCEE
Q 001991 378 HQIFGIYGEIR 388 (985)
Q Consensus 378 relFs~fG~I~ 388 (985)
...|.-|+.+.
T Consensus 205 ~~~~~g~~~~~ 215 (311)
T KOG4205|consen 205 KKYFKGYGPVG 215 (311)
T ss_pred chhccccCccc
Confidence 55565555443
No 59
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.22 E-value=5.9e-11 Score=134.90 Aligned_cols=163 Identities=17% Similarity=0.270 Sum_probs=127.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhcccCcEEEEE---eccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIY---TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 350 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVk---itgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk 350 (985)
...-|-+++||+++|++||.++|+.|+ |+.+. .+++..|=|||+|.+.+++++|++ .+-..+..+-|.|--+.++
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCc
Confidence 345677899999999999999999998 44443 468899999999999999999996 7777788888888655443
Q ss_pred CCC-------CcccccccceeeecCCCCCCHHHHHHHhhccCCEEE-EEEcC----CCCcEEEEEEcCHHHHHHHHHHhC
Q 001991 351 DNP-------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE-IRDTQ----HKHNHKFIEFYDIRAAETALRTLN 418 (985)
Q Consensus 351 ~~~-------~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~-Vri~~----~skGfaFVeF~d~edA~kAI~~LN 418 (985)
+.. .....+...|.+++||..||++||.++|+..-.|.. |.++. .+.|-|||+|++.+.|++|+. -|
T Consensus 87 e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rh 165 (510)
T KOG4211|consen 87 EADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RH 165 (510)
T ss_pred cccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HH
Confidence 321 111235668999999999999999999998655544 33332 256789999999999999998 78
Q ss_pred CceeCCceEEEEeccCcchhh
Q 001991 419 RSDVAGKQIKLEASRPGGARR 439 (985)
Q Consensus 419 G~~I~Gr~IkV~~A~~k~~Rr 439 (985)
...|+-+-|.|-.+...+.++
T Consensus 166 re~iGhRYIEvF~Ss~~e~~~ 186 (510)
T KOG4211|consen 166 RENIGHRYIEVFRSSRAEVKR 186 (510)
T ss_pred HHhhccceEEeehhHHHHHHh
Confidence 889999999998776544433
No 60
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=2.5e-11 Score=122.41 Aligned_cols=76 Identities=33% Similarity=0.509 Sum_probs=72.5
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCc
Q 001991 360 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 435 (985)
Q Consensus 360 ~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k 435 (985)
.+.|||+||+..+++.||..+|..||.|..|-|.....|||||+|+++.+|+.|+..|+|+.|.|..|+|+++.-.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 5689999999999999999999999999999998888999999999999999999999999999999999998753
No 61
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=5.7e-11 Score=119.83 Aligned_cols=78 Identities=23% Similarity=0.493 Sum_probs=73.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCC
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 351 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~ 351 (985)
-.++|||+||+..+++.||..+|..||+|.+|.+.....|||||+|++..+|+.|+..|+|+.|.|..|.|+.+.-..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 368999999999999999999999999999999988999999999999999999999999999999999999886443
No 62
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.10 E-value=2.6e-10 Score=123.11 Aligned_cols=74 Identities=19% Similarity=0.368 Sum_probs=69.2
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC--CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 001991 360 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH--KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 434 (985)
Q Consensus 360 ~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~--skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~ 434 (985)
.++|||+||++.+++++|+++|+.||+|.+|++..+ .++||||+|.+.++|+.|+. |||..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 468999999999999999999999999999999765 47999999999999999996 999999999999999864
No 63
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=1.6e-10 Score=125.86 Aligned_cols=99 Identities=16% Similarity=0.261 Sum_probs=80.5
Q ss_pred cCcccccccccccccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC---CCCcEEEEEEcCHHH
Q 001991 333 QNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ---HKHNHKFIEFYDIRA 409 (985)
Q Consensus 333 ng~~I~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~---~skGfaFVeF~d~ed 409 (985)
++-...|..+.++.+.. .+.....+.|+|.|||...-+-||+.+|++||+|.+|.|+- .+||||||+|++.+|
T Consensus 73 ~~~~t~g~~~~~~~st~----s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~d 148 (376)
T KOG0125|consen 73 NGAPTDGQPIQTQPSTN----SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPAD 148 (376)
T ss_pred CCCCCCCCccccCCCCc----CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhh
Confidence 34445555555443321 12223456899999999999999999999999999998863 479999999999999
Q ss_pred HHHHHHHhCCceeCCceEEEEeccCc
Q 001991 410 AETALRTLNRSDVAGKQIKLEASRPG 435 (985)
Q Consensus 410 A~kAI~~LNG~~I~Gr~IkV~~A~~k 435 (985)
|++|-++|||..|.||+|.|..+..+
T Consensus 149 adRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 149 ADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred HHHHHHHhhcceeeceEEEEeccchh
Confidence 99999999999999999999998764
No 64
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=2.5e-10 Score=124.25 Aligned_cols=85 Identities=21% Similarity=0.388 Sum_probs=76.2
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe---ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 269 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 269 ~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki---tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
.......++|+|.|||...-|-||+.+|++||+|.+|.| ..-+|||+||+|++.++|++|-++|+|..+.||+|.|.
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 344556689999999999999999999999999999976 56689999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 001991 346 YSIPKDNP 353 (985)
Q Consensus 346 ~a~pk~~~ 353 (985)
.+.++-..
T Consensus 170 ~ATarV~n 177 (376)
T KOG0125|consen 170 NATARVHN 177 (376)
T ss_pred ccchhhcc
Confidence 98776443
No 65
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.08 E-value=3.6e-10 Score=97.96 Aligned_cols=66 Identities=27% Similarity=0.554 Sum_probs=59.9
Q ss_pred eeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCC----CcEEEEEEcCHHHHHHHHHHhCCceeCCceEE
Q 001991 363 LVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHK----HNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 428 (985)
Q Consensus 363 LfV~NLp~svTeedLrelFs~fG~I~~Vri~~~s----kGfaFVeF~d~edA~kAI~~LNG~~I~Gr~Ik 428 (985)
|||+|||..+++++|+++|+.||.|..+++..+. +++|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999987653 68999999999999999999999999999985
No 66
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.08 E-value=8.5e-10 Score=121.49 Aligned_cols=167 Identities=20% Similarity=0.319 Sum_probs=135.1
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHH--ccCcccccccccccc
Q 001991 269 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKA--LQNKPLRRRKLDIHY 346 (985)
Q Consensus 269 ~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~--Lng~~I~Gr~L~V~~ 346 (985)
+....++-.|.|++|-..++|.+|.+.++.||.|..+.. ...+..|.|+|+|.+.|+.|+.- -+...+.|..--+.|
T Consensus 25 phk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~-~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 25 PHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTC-MPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred CCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEe-ccccceeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 445667889999999999999999999999999998876 56677899999999999999863 233457788888888
Q ss_pred cCCCCCCCc---cccccccee--eecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCce
Q 001991 347 SIPKDNPSE---KDANQGTLV--VFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSD 421 (985)
Q Consensus 347 a~pk~~~~~---~~~~~~tLf--V~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~ 421 (985)
+..+..... .......|. |-|--..+|.|-|..++...|+|.+|-|+++..=.|.|||++.+.|++|..+|||..
T Consensus 104 Stsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGAD 183 (494)
T KOG1456|consen 104 STSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGAD 183 (494)
T ss_pred chhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhccccc
Confidence 855433211 112223344 345556889999999999999999999988755579999999999999999999998
Q ss_pred e--CCceEEEEeccCcc
Q 001991 422 V--AGKQIKLEASRPGG 436 (985)
Q Consensus 422 I--~Gr~IkV~~A~~k~ 436 (985)
| +..+|+|+||+|..
T Consensus 184 IYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 184 IYSGCCTLKIEYAKPTR 200 (494)
T ss_pred ccccceeEEEEecCcce
Confidence 8 56899999999864
No 67
>smart00362 RRM_2 RNA recognition motif.
Probab=99.08 E-value=5.7e-10 Score=93.99 Aligned_cols=69 Identities=30% Similarity=0.571 Sum_probs=64.2
Q ss_pred ceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCC---CcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 001991 362 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHK---HNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 430 (985)
Q Consensus 362 tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~s---kGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~ 430 (985)
+|+|.|||..+++++|+++|.+||.|..+++..+. +++|||+|.+.++|++|++.+++..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999887654 6899999999999999999999999999999873
No 68
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=4.1e-10 Score=105.02 Aligned_cols=81 Identities=30% Similarity=0.488 Sum_probs=74.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe--ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 348 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki--tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~ 348 (985)
....++.|||+|||.++|.++..++|.+||.|+.|++ +...+|.|||.|++..+|++|++.|.|..+.++.|.|.|-+
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 4456799999999999999999999999999999998 56789999999999999999999999999999999999887
Q ss_pred CCC
Q 001991 349 PKD 351 (985)
Q Consensus 349 pk~ 351 (985)
+.+
T Consensus 94 ~~~ 96 (124)
T KOG0114|consen 94 PED 96 (124)
T ss_pred HHH
Confidence 643
No 69
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.05 E-value=4.5e-10 Score=121.28 Aligned_cols=75 Identities=19% Similarity=0.291 Sum_probs=68.5
Q ss_pred CcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe--ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001991 275 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 350 (985)
Q Consensus 275 srtLfVgNLP~~vTEedLrelFs~fG~I~sVki--tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk 350 (985)
.++|||+|||+.+++++|+++|+.||+|.+|.+ .+..+|||||+|++.++|+.|+. |+|..|.|+.|.|..+..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 579999999999999999999999999999987 33468999999999999999995 9999999999999887643
No 70
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.05 E-value=5.6e-10 Score=96.80 Aligned_cols=66 Identities=23% Similarity=0.560 Sum_probs=58.5
Q ss_pred EEEecCCCCCCHHHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCccccccccc
Q 001991 278 LFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 343 (985)
Q Consensus 278 LfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~ 343 (985)
|||+|||+++++++|+++|+.||.|..+++ .+..+++|||+|.+.++|++|++.+++..+.|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999876 244689999999999999999999998999999874
No 71
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.04 E-value=8.8e-10 Score=92.18 Aligned_cols=56 Identities=27% Similarity=0.569 Sum_probs=52.2
Q ss_pred HHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 377 LHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 377 LrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
|+++|++||+|..|.+.++.+++|||+|.+.++|++|++.|||..+.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998776799999999999999999999999999999999986
No 72
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=1.2e-09 Score=101.92 Aligned_cols=83 Identities=28% Similarity=0.423 Sum_probs=74.7
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc--CCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcc
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT--QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~--~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~ 436 (985)
-.+.|||+|||.++|.|+..++|.+||.|..|++- +.-+|-|||-|++..+|.+|+..|+|..+.++.|.|-+.++..
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 35689999999999999999999999999999984 4468999999999999999999999999999999999998876
Q ss_pred hhhhh
Q 001991 437 ARRFM 441 (985)
Q Consensus 437 ~Rrl~ 441 (985)
..+++
T Consensus 97 ~~~~~ 101 (124)
T KOG0114|consen 97 AFKLM 101 (124)
T ss_pred HHHHH
Confidence 55433
No 73
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.03 E-value=5.4e-09 Score=115.32 Aligned_cols=164 Identities=21% Similarity=0.350 Sum_probs=136.6
Q ss_pred CCCCCcEEEEecCCC--CCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCccccc--ccccccc
Q 001991 271 GEHPSRTLFVRNINS--NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHY 346 (985)
Q Consensus 271 ~e~~srtLfVgNLP~--~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~G--r~L~V~~ 346 (985)
...+...|.+.=|++ .+|-+.|..+....|+|..|.+-.+.--.|+|+|++.+.|++|.+.|||..|.. ..|+|+|
T Consensus 116 s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIey 195 (494)
T KOG1456|consen 116 SATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEY 195 (494)
T ss_pred CCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEe
Confidence 445667777776665 589999999999999999998866666689999999999999999999988753 6788888
Q ss_pred cCCCCCC--------------------------------------------------------------Cc------c--
Q 001991 347 SIPKDNP--------------------------------------------------------------SE------K-- 356 (985)
Q Consensus 347 a~pk~~~--------------------------------------------------------------~~------~-- 356 (985)
++|..-. +. .
T Consensus 196 AkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~ 275 (494)
T KOG1456|consen 196 AKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDG 275 (494)
T ss_pred cCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccC
Confidence 8764200 00 0
Q ss_pred --------cccccceeeecCCCC-CCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceE
Q 001991 357 --------DANQGTLVVFNLDSS-VSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 427 (985)
Q Consensus 357 --------~~~~~tLfV~NLp~s-vTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~I 427 (985)
......+.|.+|+.. +.-+.|..+|..||.|..|++++.+.|-|.|++.|..+.++|+..||+..+-|.+|
T Consensus 276 ~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl 355 (494)
T KOG1456|consen 276 RGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKL 355 (494)
T ss_pred CCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceE
Confidence 012346889999864 56789999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccC
Q 001991 428 KLEASRP 434 (985)
Q Consensus 428 kV~~A~~ 434 (985)
.|.+++.
T Consensus 356 ~v~~SkQ 362 (494)
T KOG1456|consen 356 NVCVSKQ 362 (494)
T ss_pred EEeeccc
Confidence 9999864
No 74
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=3.2e-10 Score=109.25 Aligned_cols=78 Identities=26% Similarity=0.467 Sum_probs=71.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
....+++|||+||+..++|++|.++|+++|+|+.|.+ +...-|||||+|.+.++|..|++.+++..+..+.|.|.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 3457899999999999999999999999999999975 56678999999999999999999999999999999998
Q ss_pred ccC
Q 001991 346 YSI 348 (985)
Q Consensus 346 ~a~ 348 (985)
|..
T Consensus 112 ~D~ 114 (153)
T KOG0121|consen 112 WDA 114 (153)
T ss_pred ccc
Confidence 753
No 75
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=6.5e-10 Score=117.23 Aligned_cols=77 Identities=22% Similarity=0.393 Sum_probs=72.2
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecc
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 433 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~ 433 (985)
...+|.|.||+.++++++|+++|.+||.|.+|.+..+ ++|||||.|.+.++|++||+.|||.-+..-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 4568999999999999999999999999999987544 78999999999999999999999999999999999999
Q ss_pred Cc
Q 001991 434 PG 435 (985)
Q Consensus 434 ~k 435 (985)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 85
No 76
>PLN03213 repressor of silencing 3; Provisional
Probab=99.00 E-value=1e-09 Score=123.98 Aligned_cols=90 Identities=20% Similarity=0.260 Sum_probs=78.4
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-CCcEEEEEEcCH--HHHHHHHHHhCCceeCCceEEEEeccC
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-KHNHKFIEFYDI--RAAETALRTLNRSDVAGKQIKLEASRP 434 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-skGfaFVeF~d~--edA~kAI~~LNG~~I~Gr~IkV~~A~~ 434 (985)
....+|||+||++.+++++|+.+|..||.|.+|.|++. .||||||+|.+. .++.+||..|||.++.|+.|+|..|++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 34568999999999999999999999999999998754 489999999987 789999999999999999999999998
Q ss_pred cchhhhhhhhhhh
Q 001991 435 GGARRFMVQSEQE 447 (985)
Q Consensus 435 k~~Rrl~qq~eq~ 447 (985)
.-.-||.+.+++.
T Consensus 88 ~YLeRLkrEReea 100 (759)
T PLN03213 88 HYLARLKREWEAA 100 (759)
T ss_pred HHHHHHHHHHHHh
Confidence 7766666554443
No 77
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=4.3e-10 Score=129.70 Aligned_cols=162 Identities=24% Similarity=0.356 Sum_probs=130.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 350 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk 350 (985)
...+.++|+|-|||..|++++|+++|+.||+|+.|+.+...+|.+||+|+|..+|++|+++|++.++.|+.|........
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999998884222111
Q ss_pred CC------------------CCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHH
Q 001991 351 DN------------------PSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAET 412 (985)
Q Consensus 351 ~~------------------~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~k 412 (985)
.. .....-+...++.- |++..+..-++.+|+.+|.+.. +.++.....-|++|.+..++..
T Consensus 151 ~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~~s~a~ 228 (549)
T KOG4660|consen 151 AMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADNRSYAF 228 (549)
T ss_pred cchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccccchhhhhhhhhccccchhh
Confidence 10 01111223455544 9999988888889999999988 7777666789999999999977
Q ss_pred HHHHhCCceeCCceEEEEeccCc
Q 001991 413 ALRTLNRSDVAGKQIKLEASRPG 435 (985)
Q Consensus 413 AI~~LNG~~I~Gr~IkV~~A~~k 435 (985)
+...+ |..+.++...++++.+.
T Consensus 229 ~~~~~-G~~~s~~~~v~t~S~~~ 250 (549)
T KOG4660|consen 229 SEPRG-GFLISNSSGVITFSGPG 250 (549)
T ss_pred cccCC-ceecCCCCceEEecCCC
Confidence 77644 67777777777777763
No 78
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=1e-09 Score=115.80 Aligned_cols=79 Identities=23% Similarity=0.447 Sum_probs=74.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
.....+|-|.||+.+++|++|+++|.+||.|..|++ ++.+||||||+|.+.++|.+||+.|||.-+..--|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 346789999999999999999999999999999975 799999999999999999999999999999999999999
Q ss_pred cCCC
Q 001991 347 SIPK 350 (985)
Q Consensus 347 a~pk 350 (985)
+.|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9886
No 79
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.95 E-value=4.6e-09 Score=88.94 Aligned_cols=70 Identities=34% Similarity=0.609 Sum_probs=65.3
Q ss_pred ceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCC----CcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 362 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHK----HNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 362 tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~s----kGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
+|+|+|||..+++++|+++|+.||.|..+.+.... +++|||+|.+.++|..|++.+++..+.|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999887654 78999999999999999999999999999999874
No 80
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=1.4e-09 Score=104.96 Aligned_cols=76 Identities=25% Similarity=0.385 Sum_probs=68.8
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc-----CCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecc
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 433 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~-----~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~ 433 (985)
..+||||+||...+++|+|.++|+++|+|+.|.+- ....|||||+|...++|+.|++.++|..+..++|.|.|--
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 56899999999999999999999999999998542 2357899999999999999999999999999999999864
Q ss_pred C
Q 001991 434 P 434 (985)
Q Consensus 434 ~ 434 (985)
-
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 3
No 81
>smart00362 RRM_2 RNA recognition motif.
Probab=98.93 E-value=2.5e-09 Score=90.12 Aligned_cols=68 Identities=34% Similarity=0.612 Sum_probs=62.2
Q ss_pred EEEEecCCCCCCHHHHHHhhcccCcEEEEEec---cccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 277 TLFVRNINSNVEDSELKALFEQFGDIRTIYTA---CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 277 tLfVgNLP~~vTEedLrelFs~fG~I~sVkit---gksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
+|||+|||..+++++|+++|++||+|..+.+. +..+|+|||+|.+.++|++|++.+++..+.|+++.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999998763 345799999999999999999999999999998876
No 82
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.92 E-value=1.6e-09 Score=114.06 Aligned_cols=77 Identities=25% Similarity=0.439 Sum_probs=67.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
.+...++|||++|++.+..++|+++|++||+|++..+ ++++|||+||+|.|.++|.+|++. -+-.|+||+-.|.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 4456789999999999999999999999999998754 799999999999999999999963 4456899988887
Q ss_pred ccC
Q 001991 346 YSI 348 (985)
Q Consensus 346 ~a~ 348 (985)
.+.
T Consensus 87 lA~ 89 (247)
T KOG0149|consen 87 LAS 89 (247)
T ss_pred hhh
Confidence 664
No 83
>smart00360 RRM RNA recognition motif.
Probab=98.92 E-value=4e-09 Score=88.35 Aligned_cols=66 Identities=35% Similarity=0.597 Sum_probs=60.5
Q ss_pred eecCCCCCCHHHHHHHhhccCCEEEEEEcCCC-----CcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 001991 365 VFNLDSSVSTEELHQIFGIYGEIREIRDTQHK-----HNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 430 (985)
Q Consensus 365 V~NLp~svTeedLrelFs~fG~I~~Vri~~~s-----kGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~ 430 (985)
|+|||..+++++|+++|++||.|..+.+..+. +++|||+|.+.++|.+|++.|++..+.|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999886543 5899999999999999999999999999999873
No 84
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.91 E-value=3.9e-09 Score=112.57 Aligned_cols=74 Identities=19% Similarity=0.254 Sum_probs=68.3
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC--CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 001991 360 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH--KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 434 (985)
Q Consensus 360 ~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~--skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~ 434 (985)
..+|||+||++.+|+++|+++|+.||+|.+|++..+ .+++|||+|.++++|+.|+. |||..|.+++|.|.....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 469999999999999999999999999999999865 45799999999999999996 999999999999998654
No 85
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.91 E-value=1.3e-09 Score=112.37 Aligned_cols=80 Identities=25% Similarity=0.500 Sum_probs=73.8
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccc
Q 001991 269 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 343 (985)
Q Consensus 269 ~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~ 343 (985)
+.......+|.|-||..-++.++|+.+|++||.|-+|+| ++.++|||||.|.+..+|+.|+++|+|.+|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 334456789999999999999999999999999999987 788999999999999999999999999999999999
Q ss_pred ccccC
Q 001991 344 IHYSI 348 (985)
Q Consensus 344 V~~a~ 348 (985)
|+++.
T Consensus 87 Vq~ar 91 (256)
T KOG4207|consen 87 VQMAR 91 (256)
T ss_pred ehhhh
Confidence 98774
No 86
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.91 E-value=1.4e-09 Score=112.22 Aligned_cols=76 Identities=26% Similarity=0.502 Sum_probs=70.6
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 001991 360 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 434 (985)
Q Consensus 360 ~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~ 434 (985)
-.+|.|.||-.-++.++|+.+|++||.|-+|.|..+ ++|||||.|.+..+|+.|+++|+|..|+|+.|.|++|+-
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 458999999999999999999999999999998654 789999999999999999999999999999999999874
Q ss_pred c
Q 001991 435 G 435 (985)
Q Consensus 435 k 435 (985)
.
T Consensus 93 g 93 (256)
T KOG4207|consen 93 G 93 (256)
T ss_pred C
Confidence 3
No 87
>PLN03213 repressor of silencing 3; Provisional
Probab=98.91 E-value=2.3e-09 Score=121.28 Aligned_cols=119 Identities=13% Similarity=0.177 Sum_probs=86.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-ccccceEEEEEeCCH--HHHHHHHHHccCcccccccccccccC
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-ACKHRGFVMISYYDI--RAARNAMKALQNKPLRRRKLDIHYSI 348 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-tgksrGfAFV~F~d~--esA~kAi~~Lng~~I~Gr~L~V~~a~ 348 (985)
.....+|||+||++.+++++|+.+|..||.|..|.+ ....||||||+|... .++.+||..|||..+.|+.|+|..++
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 345689999999999999999999999999999976 222399999999987 78999999999999999999998887
Q ss_pred CCCCC------Cc-ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEE
Q 001991 349 PKDNP------SE-KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD 392 (985)
Q Consensus 349 pk~~~------~~-~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri 392 (985)
|.-.. .. ......++-+--. ......|+-+|-+.++|+.+-+
T Consensus 87 P~YLeRLkrEReea~s~~~~~~kl~k~--~~e~~qLnifFPrLrKvKslPf 135 (759)
T PLN03213 87 EHYLARLKREWEAASSTSDNTIKAPSD--SPPATHLNIFFPRLRKVKAMPL 135 (759)
T ss_pred HHHHHHHHHHHHHhhcccccccccccc--CCccceeeEecccccccccccc
Confidence 64110 00 0001112111111 1234566777777887776544
No 88
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.89 E-value=8.1e-09 Score=107.87 Aligned_cols=75 Identities=28% Similarity=0.568 Sum_probs=69.5
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 001991 360 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 434 (985)
Q Consensus 360 ~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~-----~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~ 434 (985)
..+|||+|||.++++++|+++|.+||.|..|++.. ..+|||||+|.+.++|..|+..++|..|.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999998887754 4689999999999999999999999999999999999653
No 89
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=4.7e-09 Score=113.44 Aligned_cols=78 Identities=27% Similarity=0.464 Sum_probs=73.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
...|-+||||+-|+.+++|.+|++.|+.||+|+.|.+ +++++|||||+|++..+...|.+..+|..|+|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 3478899999999999999999999999999999854 89999999999999999999999999999999999998
Q ss_pred ccC
Q 001991 346 YSI 348 (985)
Q Consensus 346 ~a~ 348 (985)
+..
T Consensus 177 vER 179 (335)
T KOG0113|consen 177 VER 179 (335)
T ss_pred ecc
Confidence 764
No 90
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.86 E-value=5.3e-09 Score=111.63 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=67.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe--ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 348 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki--tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~ 348 (985)
...+|||+||++.+|+++|+++|+.||+|..|++ .++.++||||+|+++++|+.|+ .|+|..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 3579999999999999999999999999999987 5567789999999999999999 699999999999996543
No 91
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=3.5e-09 Score=107.63 Aligned_cols=78 Identities=32% Similarity=0.456 Sum_probs=70.8
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC--CCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCc
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ--HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 435 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~--~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k 435 (985)
...++|||+|||.++-+.+|.++|.+||.|..|.+.. ....||||+|+++.+|+.||..-+|..++|.+|+|++++..
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 3567999999999999999999999999999987643 34679999999999999999999999999999999998764
No 92
>smart00360 RRM RNA recognition motif.
Probab=98.83 E-value=7.2e-09 Score=86.80 Aligned_cols=65 Identities=32% Similarity=0.604 Sum_probs=59.3
Q ss_pred EecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 280 VRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 280 VgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
|+|||..+++++|+++|++||.|..+.+ +++++|+|||+|.+.++|.+|++.+++..+.|++|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 5799999999999999999999998876 3456899999999999999999999999999998876
No 93
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.8e-09 Score=112.12 Aligned_cols=80 Identities=29% Similarity=0.520 Sum_probs=75.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 347 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a 347 (985)
...|+|||++|..+|+|.-|...|-+||+|..|.+ +.++||||||+|...|+|..||..||+.+|.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 35689999999999999999999999999999976 7899999999999999999999999999999999999999
Q ss_pred CCCCC
Q 001991 348 IPKDN 352 (985)
Q Consensus 348 ~pk~~ 352 (985)
.|...
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 88654
No 94
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=1.4e-08 Score=109.78 Aligned_cols=90 Identities=24% Similarity=0.385 Sum_probs=78.4
Q ss_pred cCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEEcCHHHHHHHHHHhCCce
Q 001991 347 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSD 421 (985)
Q Consensus 347 a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~-----~skGfaFVeF~d~edA~kAI~~LNG~~ 421 (985)
..|..++.....+-+||||.-|+.++++.+|+..|+.||.|+.|+++. .++|||||+|+++.+...|.+..+|.+
T Consensus 88 wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~ 167 (335)
T KOG0113|consen 88 WDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIK 167 (335)
T ss_pred cCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCce
Confidence 345555544556778999999999999999999999999999998764 479999999999999999999999999
Q ss_pred eCCceEEEEeccCcc
Q 001991 422 VAGKQIKLEASRPGG 436 (985)
Q Consensus 422 I~Gr~IkV~~A~~k~ 436 (985)
|+|+.|.|.+-+...
T Consensus 168 Idgrri~VDvERgRT 182 (335)
T KOG0113|consen 168 IDGRRILVDVERGRT 182 (335)
T ss_pred ecCcEEEEEeccccc
Confidence 999999999876543
No 95
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.80 E-value=1.4e-08 Score=86.03 Aligned_cols=70 Identities=33% Similarity=0.656 Sum_probs=63.4
Q ss_pred EEEEecCCCCCCHHHHHHhhcccCcEEEEEecc----ccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 277 TLFVRNINSNVEDSELKALFEQFGDIRTIYTAC----KHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 277 tLfVgNLP~~vTEedLrelFs~fG~I~sVkitg----ksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
+|+|+|||..+++++|+++|+.||.|..+.+.. ..+|+|||+|.+.++|+.|++.+++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999987632 3489999999999999999999999999999988754
No 96
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=5.1e-09 Score=108.77 Aligned_cols=80 Identities=26% Similarity=0.485 Sum_probs=73.9
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecc
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 433 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~ 433 (985)
..++|||++|..++++.-|...|-+||.|+.|.++-+ .+|||||+|.-.|+|.+||..||+.++.||.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 4579999999999999999999999999999988643 68999999999999999999999999999999999999
Q ss_pred Ccchh
Q 001991 434 PGGAR 438 (985)
Q Consensus 434 ~k~~R 438 (985)
|...+
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 86544
No 97
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.75 E-value=1.4e-08 Score=84.91 Aligned_cols=56 Identities=29% Similarity=0.632 Sum_probs=50.6
Q ss_pred HHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001991 292 LKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 347 (985)
Q Consensus 292 LrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a 347 (985)
|+++|++||+|..+.+..+.+++|||+|.+.++|++|++.|||..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999985544799999999999999999999999999999999885
No 98
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.74 E-value=1.4e-08 Score=98.92 Aligned_cols=81 Identities=20% Similarity=0.407 Sum_probs=73.0
Q ss_pred ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 001991 356 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 430 (985)
Q Consensus 356 ~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~ 430 (985)
+......|||.++....++++|.+.|..||+|+.|.+.-+ .+|||+|+|++.++|++|+.+|||..|-|.+|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 4456678999999999999999999999999999987543 57899999999999999999999999999999999
Q ss_pred eccCcc
Q 001991 431 ASRPGG 436 (985)
Q Consensus 431 ~A~~k~ 436 (985)
|+--++
T Consensus 148 w~Fv~g 153 (170)
T KOG0130|consen 148 WCFVKG 153 (170)
T ss_pred EEEecC
Confidence 986544
No 99
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.73 E-value=1.5e-08 Score=106.88 Aligned_cols=79 Identities=24% Similarity=0.319 Sum_probs=68.2
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc-----CCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~-----~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
+...++|||++|++.+..|.|++.|++||+|+++.|+ .++||||||+|.|.++|.+|++.- .-.|+||+..|.+
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccch
Confidence 4456789999999999999999999999999997765 347999999999999999999833 3578999999998
Q ss_pred ccCcc
Q 001991 432 SRPGG 436 (985)
Q Consensus 432 A~~k~ 436 (985)
|--+.
T Consensus 88 A~lg~ 92 (247)
T KOG0149|consen 88 ASLGG 92 (247)
T ss_pred hhhcC
Confidence 87644
No 100
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.6e-07 Score=108.18 Aligned_cols=142 Identities=19% Similarity=0.321 Sum_probs=108.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-------ccccce---EEEEEeCCHHHHHHHHHHccCcccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-------ACKHRG---FVMISYYDIRAARNAMKALQNKPLRRR 340 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-------tgksrG---fAFV~F~d~esA~kAi~~Lng~~I~Gr 340 (985)
...-+++|||++||++++|++|...|..||.+..-.- ....+| |+|+.|+++..++.-+.+..- ...
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~ 331 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEG 331 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---ccc
Confidence 4556899999999999999999999999998764321 122456 999999999998887765332 333
Q ss_pred cccccccCCCCCC-------------------CcccccccceeeecCCCCCCHHHHHHHhh-ccCCEEEEEEcCC-----
Q 001991 341 KLDIHYSIPKDNP-------------------SEKDANQGTLVVFNLDSSVSTEELHQIFG-IYGEIREIRDTQH----- 395 (985)
Q Consensus 341 ~L~V~~a~pk~~~-------------------~~~~~~~~tLfV~NLp~svTeedLrelFs-~fG~I~~Vri~~~----- 395 (985)
+++++.+.+.... ...-.+.+||||++||--++.++|..+|+ -||.|..+-|..|
T Consensus 332 ~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KY 411 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKY 411 (520)
T ss_pred ceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCC
Confidence 3444333332211 11223567999999999999999999999 6999999887655
Q ss_pred CCcEEEEEEcCHHHHHHHHH
Q 001991 396 KHNHKFIEFYDIRAAETALR 415 (985)
Q Consensus 396 skGfaFVeF~d~edA~kAI~ 415 (985)
.+|-|-|.|.+..+-.+||.
T Consensus 412 PkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 412 PKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CCCcceeeecccHHHHHHHh
Confidence 57889999999999999998
No 101
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.67 E-value=3.3e-09 Score=107.74 Aligned_cols=75 Identities=20% Similarity=0.420 Sum_probs=70.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 347 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a 347 (985)
..+.-|||+|||.+.||.||.-+|++||+|+.|.+ +|+++||||+.|++..+...|+..|||..|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 46788999999999999999999999999999864 8999999999999999999999999999999999999643
No 102
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.66 E-value=2.7e-08 Score=115.22 Aligned_cols=77 Identities=25% Similarity=0.450 Sum_probs=72.9
Q ss_pred cEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001991 276 RTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 350 (985)
Q Consensus 276 rtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk 350 (985)
+.|||||||++++|++|.++|+..|.|.++++ +++.+||||++|.+.++|.+|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999975 7999999999999999999999999999999999999998755
Q ss_pred CC
Q 001991 351 DN 352 (985)
Q Consensus 351 ~~ 352 (985)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 103
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.65 E-value=6.3e-08 Score=112.25 Aligned_cols=79 Identities=25% Similarity=0.354 Sum_probs=73.0
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCc
Q 001991 361 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 435 (985)
Q Consensus 361 ~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k 435 (985)
+.+||+|+|.++++++|..+|+..|.|.++++.-| .+||||++|.+.++|++|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999988643 6899999999999999999999999999999999999866
Q ss_pred chhh
Q 001991 436 GARR 439 (985)
Q Consensus 436 ~~Rr 439 (985)
..+.
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 6544
No 104
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.63 E-value=3.6e-08 Score=96.02 Aligned_cols=81 Identities=17% Similarity=0.442 Sum_probs=73.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
.....-.|||.++-+.++|++|.+.|..||+|..+.+ ++-.+|||+|+|++.++|++|+..+||..|.|.+|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 4445678999999999999999999999999999865 68889999999999999999999999999999999999
Q ss_pred ccCCCC
Q 001991 346 YSIPKD 351 (985)
Q Consensus 346 ~a~pk~ 351 (985)
|+.-+.
T Consensus 148 w~Fv~g 153 (170)
T KOG0130|consen 148 WCFVKG 153 (170)
T ss_pred EEEecC
Confidence 986543
No 105
>smart00361 RRM_1 RNA recognition motif.
Probab=98.61 E-value=1e-07 Score=83.74 Aligned_cols=56 Identities=27% Similarity=0.464 Sum_probs=49.2
Q ss_pred HHHHHHHhh----ccCCEEEEE-E-c------CCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEE
Q 001991 374 TEELHQIFG----IYGEIREIR-D-T------QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKL 429 (985)
Q Consensus 374 eedLrelFs----~fG~I~~Vr-i-~------~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV 429 (985)
+++|+++|+ +||.|.+|. + + +.++|||||+|.+.++|.+|++.|||+.+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 577888888 999999884 2 2 346899999999999999999999999999999987
No 106
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=7.2e-08 Score=112.52 Aligned_cols=164 Identities=18% Similarity=0.344 Sum_probs=134.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccc-----------C-cEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQF-----------G-DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR 338 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~f-----------G-~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~ 338 (985)
.....+.+||+++|..++++.+-.+|..- | .|..+.+ ...+.|||++|.+.+.|..|+ .+++..+.
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~-n~~~nfa~ie~~s~~~at~~~-~~~~~~f~ 248 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL-NLEKNFAFIEFRSISEATEAM-ALDGIIFE 248 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee-cccccceeEEecCCCchhhhh-cccchhhC
Confidence 34556899999999999999999988754 3 3777777 778899999999999999999 58998888
Q ss_pred cccccccccCCCCC-------------------CCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----
Q 001991 339 RRKLDIHYSIPKDN-------------------PSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ----- 394 (985)
Q Consensus 339 Gr~L~V~~a~pk~~-------------------~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~----- 394 (985)
|..+.+........ ..........++|++||..+++++++++...||.+...++..
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 88877732211100 011123456899999999999999999999999998866643
Q ss_pred CCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcc
Q 001991 395 HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 395 ~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~ 436 (985)
.++||||.+|.+......|+..|||..+++++|.|..|....
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 478999999999999999999999999999999999987654
No 107
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.60 E-value=2.5e-08 Score=120.00 Aligned_cols=159 Identities=19% Similarity=0.337 Sum_probs=138.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEec----cccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTA----CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkit----gksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
....+++||++||+..+++.+|+..|..+|.|..|.+. +...-||||.|.+...+-.|.-++.+..|....+++.+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 45568999999999999999999999999999999872 23345999999999999999999999999888888888
Q ss_pred cCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCC--
Q 001991 347 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAG-- 424 (985)
Q Consensus 347 a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~G-- 424 (985)
..++ ....+.++|++|...+....|...|..||.|..|.+. +..-|+||.|.+...|+.|+..|-|..|+|
T Consensus 448 G~~k------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~-hgq~yayi~yes~~~aq~a~~~~rgap~G~P~ 520 (975)
T KOG0112|consen 448 GQPK------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR-HGQPYAYIQYESPPAAQAATHDMRGAPLGGPP 520 (975)
T ss_pred cccc------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc-cCCcceeeecccCccchhhHHHHhcCcCCCCC
Confidence 7653 3446689999999999999999999999999998764 346699999999999999999999999986
Q ss_pred ceEEEEeccCcc
Q 001991 425 KQIKLEASRPGG 436 (985)
Q Consensus 425 r~IkV~~A~~k~ 436 (985)
++|.|.|+.+..
T Consensus 521 ~r~rvdla~~~~ 532 (975)
T KOG0112|consen 521 RRLRVDLASPPG 532 (975)
T ss_pred cccccccccCCC
Confidence 789999998654
No 108
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.57 E-value=7.4e-08 Score=114.50 Aligned_cols=76 Identities=33% Similarity=0.558 Sum_probs=72.3
Q ss_pred CcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCC
Q 001991 275 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 351 (985)
Q Consensus 275 srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~ 351 (985)
+|||||+.|+.+++|.||.++|+.||+|.+|.+ ...+|||||......+|.+|+.+|.+..+.++.|+|.|+..+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l-i~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL-IPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEee-ccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 699999999999999999999999999999998 6789999999999999999999999999999999999997554
No 109
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.54 E-value=9.9e-09 Score=104.29 Aligned_cols=75 Identities=20% Similarity=0.376 Sum_probs=69.4
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecc
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 433 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~ 433 (985)
...-|||+|||..+|+.+|..+|++||+|..|.++++ ++||||++|+|.++..-|+..|||..|.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 4567999999999999999999999999999988654 78999999999999999999999999999999998754
No 110
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.52 E-value=1.8e-07 Score=98.46 Aligned_cols=75 Identities=27% Similarity=0.499 Sum_probs=70.2
Q ss_pred ceeeecCCCCCCHHHHHH----HhhccCCEEEEEEc--CCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCc
Q 001991 362 TLVVFNLDSSVSTEELHQ----IFGIYGEIREIRDT--QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 435 (985)
Q Consensus 362 tLfV~NLp~svTeedLre----lFs~fG~I~~Vri~--~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k 435 (985)
||||.||.+.+..++|+. +|++||+|.+|... +.-+|.|||.|.+.+.|..|++.|+|..+-||.++|.||+.+
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~ 90 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSD 90 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCc
Confidence 999999999999999988 99999999998875 446899999999999999999999999999999999999876
Q ss_pred c
Q 001991 436 G 436 (985)
Q Consensus 436 ~ 436 (985)
.
T Consensus 91 s 91 (221)
T KOG4206|consen 91 S 91 (221)
T ss_pred c
Confidence 5
No 111
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.49 E-value=2.4e-07 Score=110.24 Aligned_cols=81 Identities=28% Similarity=0.373 Sum_probs=76.2
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcch
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 437 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~~ 437 (985)
...+||||+.|+..+++.||..+|+.||+|.+|.++. .+++|||++....+|.+|+.+|+...+.++.|+|.|+..++.
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 4578999999999999999999999999999998876 589999999999999999999999999999999999999887
Q ss_pred hh
Q 001991 438 RR 439 (985)
Q Consensus 438 Rr 439 (985)
+.
T Consensus 498 ks 499 (894)
T KOG0132|consen 498 KS 499 (894)
T ss_pred ch
Confidence 65
No 112
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.46 E-value=2.2e-07 Score=99.12 Aligned_cols=81 Identities=22% Similarity=0.406 Sum_probs=75.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
-.+.++|||-.||.+..+.||...|-.||.|.+.++ ++.+|+|+||.|.++.+|+.||..|||..|+-++|+|+.
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 345799999999999999999999999999999865 789999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 001991 347 SIPKDN 352 (985)
Q Consensus 347 a~pk~~ 352 (985)
..||+.
T Consensus 362 KRPkda 367 (371)
T KOG0146|consen 362 KRPKDA 367 (371)
T ss_pred cCcccc
Confidence 888764
No 113
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.44 E-value=1.5e-07 Score=99.55 Aligned_cols=162 Identities=19% Similarity=0.322 Sum_probs=111.6
Q ss_pred cccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhH
Q 001991 147 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFD 225 (985)
Q Consensus 147 ~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~ff~t~Edaee~~ 225 (985)
..+|+++|.+ ...+.|... | +-+|.|.-.+ ...|||||+ |++.-|++ |
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~--------------f--------~~yg~~~d~~------mk~gf~fv~-fed~rda~--D 50 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERF--------------F--------KGYGKIPDAD------MKNGFGFVE-FEDPRDAD--D 50 (216)
T ss_pred CceeecccCCccchhHHHHH--------------H--------hhccccccce------eecccceec-cCchhhhh--c
Confidence 4678888887 545455444 6 5566443321 145699998 66777778 8
Q ss_pred HHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCC----cCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCc
Q 001991 226 LFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGS----VVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGD 301 (985)
Q Consensus 226 ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~----~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~ 301 (985)
|+...+|.+|.+.. +.+...... ....+..-+. ............+.+.|.+++..+.+.+|.+.|.++|.
T Consensus 51 av~~l~~~~l~~e~-~vve~~r~~----~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~ 125 (216)
T KOG0106|consen 51 AVHDLDGKELCGER-LVVEHARGK----RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGE 125 (216)
T ss_pred ccchhcCceeccee-eeeeccccc----ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCC
Confidence 99999999998544 222221110 0000110000 01111223455688999999999999999999999999
Q ss_pred EEEEEeccccceEEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001991 302 IRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 347 (985)
Q Consensus 302 I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a 347 (985)
+..... ..+++||+|...++|.+|+..|++..+.++.|.+.+.
T Consensus 126 ~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 126 VTYVDA---RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred Cchhhh---hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 954444 7889999999999999999999999999999999544
No 114
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.44 E-value=5.3e-08 Score=101.52 Aligned_cols=131 Identities=22% Similarity=0.296 Sum_probs=103.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 348 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~ 348 (985)
...+||||.|+...|+|+-|.++|-+.|+|..|.+ .++.+ ||||.|+++-.+.-|++.+||..+.++.+.|++-.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 45699999999999999999999999999999987 33444 99999999999999999999999999988886543
Q ss_pred CCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHh
Q 001991 349 PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTL 417 (985)
Q Consensus 349 pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~L 417 (985)
-.... -|+..++.+.+.+.|+.-|.+..+++... .+.++|+.+...-+.-.|+...
T Consensus 86 G~sha-------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y 145 (267)
T KOG4454|consen 86 GNSHA-------------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLY 145 (267)
T ss_pred CCCcc-------------hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhh
Confidence 21110 16677899999999999999998887543 4567777765555544555433
No 115
>smart00361 RRM_1 RNA recognition motif.
Probab=98.43 E-value=3.6e-07 Score=80.25 Aligned_cols=56 Identities=23% Similarity=0.402 Sum_probs=50.3
Q ss_pred HHHHHHhhc----ccCcEEEEE---e---c--cccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 289 DSELKALFE----QFGDIRTIY---T---A--CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 289 EedLrelFs----~fG~I~sVk---i---t--gksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
+++|+++|+ +||.|.++. + + +.++|||||+|.+.++|.+|++.|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999884 2 2 678999999999999999999999999999999875
No 116
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.41 E-value=5.2e-07 Score=99.62 Aligned_cols=79 Identities=30% Similarity=0.435 Sum_probs=70.5
Q ss_pred cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHh-CCceeCCceEEEEecc
Q 001991 355 EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTL-NRSDVAGKQIKLEASR 433 (985)
Q Consensus 355 ~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~L-NG~~I~Gr~IkV~~A~ 433 (985)
..+..-.+|||++|-+.+++.+|+++|.+||+|++|++... +++|||+|.+.++|++|.+++ |...|.|++|+|.|++
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 34566779999999999999999999999999999998875 669999999999999998765 5567899999999999
Q ss_pred C
Q 001991 434 P 434 (985)
Q Consensus 434 ~ 434 (985)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 8
No 117
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.41 E-value=4.1e-07 Score=100.39 Aligned_cols=83 Identities=23% Similarity=0.467 Sum_probs=73.4
Q ss_pred CCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHH-ccCccccccccccc
Q 001991 267 EHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKA-LQNKPLRRRKLDIH 345 (985)
Q Consensus 267 e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~-Lng~~I~Gr~L~V~ 345 (985)
..+.++...++|||++|...++|.+|+++|.+||+|+++.+ -..+++|||+|.+.++|+.|.++ ++...|.|++|.|.
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~-~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRI-LPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEe-ecccccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 45567778899999999999999999999999999999988 45567999999999999999876 45567899999999
Q ss_pred ccCCC
Q 001991 346 YSIPK 350 (985)
Q Consensus 346 ~a~pk 350 (985)
|..++
T Consensus 299 Wg~~~ 303 (377)
T KOG0153|consen 299 WGRPK 303 (377)
T ss_pred eCCCc
Confidence 99883
No 118
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=6.4e-07 Score=98.73 Aligned_cols=79 Identities=22% Similarity=0.360 Sum_probs=72.4
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCC-----CcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHK-----HNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~s-----kGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
.++.+.|||..|.+-+++++|.-+|+.||+|.+|.++.+. -.||||+|++.+++++|.-.|++..|..++|.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 3567899999999999999999999999999999988663 45999999999999999999999999999999999
Q ss_pred ccCc
Q 001991 432 SRPG 435 (985)
Q Consensus 432 A~~k 435 (985)
++.-
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 8753
No 119
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.31 E-value=6.7e-07 Score=99.22 Aligned_cols=162 Identities=20% Similarity=0.276 Sum_probs=130.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 347 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a 347 (985)
....++|++++...+.+.+...++..+|.+....+ ...++|+++|.|...+.+..|+.......+.++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 45789999999999999999999999997776643 4678999999999999999999754445666665555444
Q ss_pred CCCCCC-------Cccccccccee-eecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHH
Q 001991 348 IPKDNP-------SEKDANQGTLV-VFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETAL 414 (985)
Q Consensus 348 ~pk~~~-------~~~~~~~~tLf-V~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI 414 (985)
...... ..... ..++| |.+|+..+++++|+..|..+|.|..+++... .++||||+|.+...+..|+
T Consensus 166 ~~~~~~~~n~~~~~~~~~-s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGP-SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred ccccccccchhcccccCc-cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 332211 11122 23455 9999999999999999999999999998654 5789999999999999999
Q ss_pred HHhCCceeCCceEEEEeccCcc
Q 001991 415 RTLNRSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 415 ~~LNG~~I~Gr~IkV~~A~~k~ 436 (985)
.. ....+.++++.+.+..+..
T Consensus 245 ~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 245 ND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred hc-ccCcccCcccccccCCCCc
Confidence 97 8889999999999987754
No 120
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.28 E-value=4e-06 Score=93.45 Aligned_cols=162 Identities=12% Similarity=0.177 Sum_probs=118.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccc-----Cc--EEEEEe-ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQF-----GD--IRTIYT-ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~f-----G~--I~sVki-tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
..-.|-+++||.++++.++.++|..- |. |.-|+- +++..|-|||.|..+++|+.|+. .+...|+.|-|.+-
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElF 238 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELF 238 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHH
Confidence 34567789999999999999999732 22 233332 68889999999999999999996 44445554544442
Q ss_pred ccCC--------------CCC-------C------CcccccccceeeecCCCCCCHHHHHHHhhccCC-EEE--EEEc--
Q 001991 346 YSIP--------------KDN-------P------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGE-IRE--IRDT-- 393 (985)
Q Consensus 346 ~a~p--------------k~~-------~------~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~-I~~--Vri~-- 393 (985)
.+.. -.. . ........+|.+++||...+.|+|..+|..|-. |.. |.++
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN 318 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc
Confidence 1110 000 0 011223568999999999999999999999874 332 4443
Q ss_pred --CCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcc
Q 001991 394 --QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 394 --~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~ 436 (985)
+...|-|||+|.+.|+|..|....+++..+.|.|.|-.+.-.+
T Consensus 319 ~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ee 363 (508)
T KOG1365|consen 319 GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEE 363 (508)
T ss_pred CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHH
Confidence 3356789999999999999999999998889999998776544
No 121
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.25 E-value=1.5e-05 Score=91.76 Aligned_cols=151 Identities=11% Similarity=0.160 Sum_probs=102.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEE-EE----eccccceEEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRT-IY----TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 347 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~s-Vk----itgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a 347 (985)
.....|-+++||..||++||.++|+-.-.|.. +. -.++..|-|||+|++.+.|++|+. -+...|..|-|.|-.+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehh
Confidence 45678999999999999999999997655444 21 246678899999999999999995 4444454444433110
Q ss_pred -----------------------C------------CCC------C------------------C--------Ccc----
Q 001991 348 -----------------------I------------PKD------N------------------P--------SEK---- 356 (985)
Q Consensus 348 -----------------------~------------pk~------~------------------~--------~~~---- 356 (985)
. .+. . . ..+
T Consensus 180 s~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~ 259 (510)
T KOG4211|consen 180 SRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNY 259 (510)
T ss_pred HHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccccccc
Confidence 0 000 0 0 000
Q ss_pred -----------------cccc-cceeeecCCCCCCHHHHHHHhhccCCE-EEEEEcC--CCCcEEEEEEcCHHHHHHHHH
Q 001991 357 -----------------DANQ-GTLVVFNLDSSVSTEELHQIFGIYGEI-REIRDTQ--HKHNHKFIEFYDIRAAETALR 415 (985)
Q Consensus 357 -----------------~~~~-~tLfV~NLp~svTeedLrelFs~fG~I-~~Vri~~--~skGfaFVeF~d~edA~kAI~ 415 (985)
.... ..++.++||...++.++..+|+..-.+ ..|.+-+ ...|-|+|+|.+.++|..|+.
T Consensus 260 ~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 260 PVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCCCccCCcceeecccchhhHhhhc
Confidence 0011 357778999999999999999986554 3344433 356789999999999999986
Q ss_pred HhCCceeCCc
Q 001991 416 TLNRSDVAGK 425 (985)
Q Consensus 416 ~LNG~~I~Gr 425 (985)
-++..+..+
T Consensus 340 -kd~anm~hr 348 (510)
T KOG4211|consen 340 -KDGANMGHR 348 (510)
T ss_pred -cCCcccCcc
Confidence 333344433
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.22 E-value=1.7e-07 Score=112.66 Aligned_cols=139 Identities=14% Similarity=0.218 Sum_probs=120.4
Q ss_pred CcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001991 275 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 349 (985)
Q Consensus 275 srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~p 349 (985)
..++||+||++.+.+++|...|..+|.|..+++ .++.||+|||.|...+++.+|+.......+ |
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~-g---------- 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF-G---------- 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh-h----------
Confidence 468999999999999999999999998887753 678899999999999999999964333332 2
Q ss_pred CCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC----CCCcEEEEEEcCHHHHHHHHHHhCCceeCCc
Q 001991 350 KDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ----HKHNHKFIEFYDIRAAETALRTLNRSDVAGK 425 (985)
Q Consensus 350 k~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~----~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr 425 (985)
...|+|.|.|...|.++|+.+|..+|.+++++++. ..+|.+||.|.+..+|.++...+.+..+.-+
T Consensus 736 ----------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~ 805 (881)
T KOG0128|consen 736 ----------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKREN 805 (881)
T ss_pred ----------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhc
Confidence 23689999999999999999999999999987653 3678999999999999999999998888888
Q ss_pred eEEEEeccC
Q 001991 426 QIKLEASRP 434 (985)
Q Consensus 426 ~IkV~~A~~ 434 (985)
.+.|..+.|
T Consensus 806 ~~~v~vsnp 814 (881)
T KOG0128|consen 806 NGEVQVSNP 814 (881)
T ss_pred CccccccCC
Confidence 888888776
No 123
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.2e-06 Score=96.57 Aligned_cols=81 Identities=20% Similarity=0.393 Sum_probs=73.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
...|...|||.-|++-+|+++|.-+|+.||.|.+|.+ ++.+..||||+|++.+++++|.-.|++..|..++|.|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 3457789999999999999999999999999999965 67888899999999999999999999999999999999
Q ss_pred ccCCCC
Q 001991 346 YSIPKD 351 (985)
Q Consensus 346 ~a~pk~ 351 (985)
|++...
T Consensus 315 FSQSVs 320 (479)
T KOG0415|consen 315 FSQSVS 320 (479)
T ss_pred hhhhhh
Confidence 987543
No 124
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.15 E-value=4.1e-06 Score=87.30 Aligned_cols=81 Identities=19% Similarity=0.341 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccc-CcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQF-GDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 343 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~f-G~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~ 343 (985)
........+||..+|.-+.+.++..+|.+| |.|+.+++ +|.++|||||+|++.+.|.-|-+.||+..+.++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 345567889999999999999999999999 77777765 799999999999999999999999999999999999
Q ss_pred ccccCCC
Q 001991 344 IHYSIPK 350 (985)
Q Consensus 344 V~~a~pk 350 (985)
|++-.|.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9987654
No 125
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.13 E-value=1.8e-06 Score=92.11 Aligned_cols=160 Identities=18% Similarity=0.218 Sum_probs=118.6
Q ss_pred EEEEecCCCCCCHHH-H--HHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001991 277 TLFVRNINSNVEDSE-L--KALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 349 (985)
Q Consensus 277 tLfVgNLP~~vTEed-L--relFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~p 349 (985)
.+++.++-..+..+- | ...|+.|-.+...++ .+..++++|+.|.....-.++-..-+++++.-.++++.-...
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts 177 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS 177 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccc
Confidence 344555555554443 2 455555554443322 466788999999988888888877788888877777655544
Q ss_pred CCCCC--cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc-----CCCCcEEEEEEcCHHHHHHHHHHhCCcee
Q 001991 350 KDNPS--EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDV 422 (985)
Q Consensus 350 k~~~~--~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~-----~~skGfaFVeF~d~edA~kAI~~LNG~~I 422 (985)
-.++. +.+...-.||.+.|..+++++.|-..|.+|-.....+++ .+++||+||.|.+..++..|+++|||+.+
T Consensus 178 wedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV 257 (290)
T KOG0226|consen 178 WEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV 257 (290)
T ss_pred cCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc
Confidence 44432 344566799999999999999999999998765554444 44789999999999999999999999999
Q ss_pred CCceEEEEeccCcc
Q 001991 423 AGKQIKLEASRPGG 436 (985)
Q Consensus 423 ~Gr~IkV~~A~~k~ 436 (985)
+.++|++..+.-++
T Consensus 258 gsrpiklRkS~wke 271 (290)
T KOG0226|consen 258 GSRPIKLRKSEWKE 271 (290)
T ss_pred ccchhHhhhhhHHh
Confidence 99999987665544
No 126
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.04 E-value=6.3e-06 Score=95.17 Aligned_cols=75 Identities=20% Similarity=0.380 Sum_probs=69.3
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 001991 360 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 434 (985)
Q Consensus 360 ~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~ 434 (985)
.++|+|.+|...+-..+|+.+|++||+|+-.+++.+ -++|+||++.+.++|.++|..|+.++|.|+.|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 468999999999999999999999999999888644 478999999999999999999999999999999999875
No 127
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=98.01 E-value=5.6e-06 Score=85.89 Aligned_cols=91 Identities=19% Similarity=0.356 Sum_probs=60.3
Q ss_pred CCceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEec--cc--ccccceeEEEEEecCCchhhHHHHHHhcCCcccCCC
Q 001991 808 DSRTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLP--ID--FKNKCNVGYAFINMIDPRQIIPFHQAFNGKKWEKFN 883 (985)
Q Consensus 808 d~rTTvMirNIPnk~t~~~L~~~id~~~~g~yDF~Ylp--iD--f~~~~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~ 883 (985)
..++.|.||++|..+|++.+++.|+......++|-|.+ .+ --..+-...|||||.+.+++..|.+.|+|+.|..-.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 46889999999999999999998887666665555544 22 223445788999999999999999999999998665
Q ss_pred Cc-cEEEEEeecccCH
Q 001991 884 SE-KVASLAYARIQGK 898 (985)
Q Consensus 884 s~-K~~~v~yA~iQG~ 898 (985)
.. -++.|.||-.|-.
T Consensus 85 g~~~~~~VE~Apyqk~ 100 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQKV 100 (176)
T ss_dssp S-EEEEEEEE-SS---
T ss_pred CCCcceeEEEcchhcc
Confidence 54 5899999998754
No 128
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.98 E-value=1.2e-05 Score=95.21 Aligned_cols=85 Identities=20% Similarity=0.383 Sum_probs=75.1
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe--------ccccceEEEEEeCCHHHHHHHHHHccCccc
Q 001991 266 GEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--------ACKHRGFVMISYYDIRAARNAMKALQNKPL 337 (985)
Q Consensus 266 ~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki--------tgksrGfAFV~F~d~esA~kAi~~Lng~~I 337 (985)
+....++..+++|||+||++.++++.|...|..||+|.++++ ....+.++||.|.+..+|++|++.|+|..+
T Consensus 165 gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv 244 (877)
T KOG0151|consen 165 GSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV 244 (877)
T ss_pred CcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee
Confidence 444456677899999999999999999999999999999986 244567999999999999999999999999
Q ss_pred ccccccccccCCC
Q 001991 338 RRRKLDIHYSIPK 350 (985)
Q Consensus 338 ~Gr~L~V~~a~pk 350 (985)
.+..+++.|+++.
T Consensus 245 ~~~e~K~gWgk~V 257 (877)
T KOG0151|consen 245 MEYEMKLGWGKAV 257 (877)
T ss_pred eeeeeeecccccc
Confidence 9999999998543
No 129
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.97 E-value=1.9e-05 Score=82.40 Aligned_cols=79 Identities=19% Similarity=0.273 Sum_probs=71.1
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhcc-CCEEEEEE-----cCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIY-GEIREIRD-----TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 430 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~f-G~I~~Vri-----~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~ 430 (985)
....+.++|..+|..+.+.++...|.+| |.|..+++ +++++|||||+|++.+.|.-|-+.||+..+.++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3456789999999999999999999998 77888877 35689999999999999999999999999999999999
Q ss_pred eccCc
Q 001991 431 ASRPG 435 (985)
Q Consensus 431 ~A~~k 435 (985)
+-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 98775
No 130
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.90 E-value=1.8e-06 Score=97.03 Aligned_cols=149 Identities=17% Similarity=0.337 Sum_probs=123.0
Q ss_pred cEEEEecCCCCCCHHHHHHhhcccC--cEEEEEeccccceEEEEEeCCHHHHHHHHHHccCc-ccccccccccccCCCCC
Q 001991 276 RTLFVRNINSNVEDSELKALFEQFG--DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNK-PLRRRKLDIHYSIPKDN 352 (985)
Q Consensus 276 rtLfVgNLP~~vTEedLrelFs~fG--~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~-~I~Gr~L~V~~a~pk~~ 352 (985)
.++|++||.+.++.++|..+|...- --..+- ...||+||.+.+...|.+|++.++|+ ++.|+++.|.++.++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl---~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL---VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee---eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 4689999999999999999997541 000011 24589999999999999999999995 68999999999887765
Q ss_pred CCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-C-CcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 001991 353 PSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-K-HNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 430 (985)
Q Consensus 353 ~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-s-kGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~ 430 (985)
+ .+.+-|.|+|+..-++.|..+..+||.+..|..+.- + .-..-|+|...+.+..||..|+|..+....++|.
T Consensus 79 r------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~ 152 (584)
T KOG2193|consen 79 R------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVG 152 (584)
T ss_pred H------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcc
Confidence 4 445999999999999999999999999998865432 2 1234578999999999999999999999999999
Q ss_pred ecc
Q 001991 431 ASR 433 (985)
Q Consensus 431 ~A~ 433 (985)
|--
T Consensus 153 YiP 155 (584)
T KOG2193|consen 153 YIP 155 (584)
T ss_pred cCc
Confidence 853
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.90 E-value=1.7e-05 Score=91.67 Aligned_cols=76 Identities=18% Similarity=0.344 Sum_probs=68.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 347 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a 347 (985)
.-.++|||.+|...+-..+|+++|++||+|+-.++ +.--++|+||++.+.++|.+||+.|+-.+|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34699999999999999999999999999998765 2335789999999999999999999999999999999776
Q ss_pred C
Q 001991 348 I 348 (985)
Q Consensus 348 ~ 348 (985)
+
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 4
No 132
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.86 E-value=2e-05 Score=93.60 Aligned_cols=78 Identities=28% Similarity=0.381 Sum_probs=71.3
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC--------CCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEE
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ--------HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 428 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~--------~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~Ik 428 (985)
+...++|||.||++.++++.|...|+.||.|..|+++- ..+.+|||-|-+..+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45677999999999999999999999999999999862 2467899999999999999999999999999999
Q ss_pred EEeccC
Q 001991 429 LEASRP 434 (985)
Q Consensus 429 V~~A~~ 434 (985)
+.|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999964
No 133
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.77 E-value=4.3e-05 Score=82.77 Aligned_cols=80 Identities=26% Similarity=0.377 Sum_probs=70.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
.+....+|+|.|||..|+++||+++|+.||.+..+-+ .+.+.|.|-|.|...++|.+|++.+++..+.|+.|.+..
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3445588999999999999999999999998887755 688899999999999999999999999999999998876
Q ss_pred cCCC
Q 001991 347 SIPK 350 (985)
Q Consensus 347 a~pk 350 (985)
..+.
T Consensus 159 i~~~ 162 (243)
T KOG0533|consen 159 ISSP 162 (243)
T ss_pred ecCc
Confidence 6543
No 134
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.72 E-value=3.6e-05 Score=80.87 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=68.3
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC---CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH---KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 434 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~---skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~ 434 (985)
..+||||.|+...++++-|.++|-+.|.|..|.|... ...||||.|.++-...-|++.|||..+.+..|+|.+-.-
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 4579999999999999999999999999999988653 223999999999999999999999999999999988543
No 135
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.68 E-value=0.00011 Score=77.35 Aligned_cols=78 Identities=21% Similarity=0.272 Sum_probs=65.3
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEE--EEcCCC----CcEEEEEEcCHHHHHHHHHHhCCceeC---CceEEE
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREI--RDTQHK----HNHKFIEFYDIRAAETALRTLNRSDVA---GKQIKL 429 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~V--ri~~~s----kGfaFVeF~d~edA~kAI~~LNG~~I~---Gr~IkV 429 (985)
.-+||||.+||.++...+|+.+|..|-..+.. +...+. +-+|||.|.+..+|.+|+.+|||..|+ +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 35799999999999999999999998655553 333322 358999999999999999999999985 899999
Q ss_pred EeccCcc
Q 001991 430 EASRPGG 436 (985)
Q Consensus 430 ~~A~~k~ 436 (985)
++++...
T Consensus 113 ElAKSNt 119 (284)
T KOG1457|consen 113 ELAKSNT 119 (284)
T ss_pred eehhcCc
Confidence 9998654
No 136
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.66 E-value=0.00019 Score=65.58 Aligned_cols=69 Identities=23% Similarity=0.308 Sum_probs=49.1
Q ss_pred cceeeecCCCCCCHH----HHHHHhhccC-CEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 001991 361 GTLVVFNLDSSVSTE----ELHQIFGIYG-EIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 434 (985)
Q Consensus 361 ~tLfV~NLp~svTee----dLrelFs~fG-~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~ 434 (985)
..|+|.|||.+.+.. .|++++.-+| +|.+|. .+.|+|.|.+.+.|++|.+.|+|..+-|.+|.|.+...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 469999999998864 4677777776 677763 68999999999999999999999999999999999743
No 137
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.63 E-value=4.8e-05 Score=88.26 Aligned_cols=74 Identities=26% Similarity=0.414 Sum_probs=62.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe---c--cccceEEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---A--CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 348 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki---t--gksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~ 348 (985)
...+|||+|||.++++++|+++|.+||+|+...+ . ++..+||||+|++.++++.|+.+ +-..|++++|.|+--.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 3456999999999999999999999999998765 2 34448999999999999999974 4778889999986443
No 138
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.62 E-value=0.00016 Score=78.48 Aligned_cols=78 Identities=21% Similarity=0.322 Sum_probs=69.0
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 434 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~ 434 (985)
...+|+|.|||..|++++|+++|..||.++.+-+..+ +.|.|-|.|...++|.+|++.+||..++|+.+++....+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 3468999999999999999999999998888776533 568999999999999999999999999999999988765
Q ss_pred cc
Q 001991 435 GG 436 (985)
Q Consensus 435 k~ 436 (985)
..
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 43
No 139
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.61 E-value=7.8e-05 Score=86.52 Aligned_cols=74 Identities=26% Similarity=0.464 Sum_probs=63.4
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC----C-CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCc
Q 001991 361 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ----H-KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 435 (985)
Q Consensus 361 ~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~----~-skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k 435 (985)
.+|||+|||.+++.++|+++|..||.|+..+|.. . ..+||||+|.+.++++.||.+ +-..|++++|.|+-.++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 4699999999999999999999999999866542 1 237999999999999999994 477899999999876553
No 140
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.59 E-value=0.00012 Score=81.45 Aligned_cols=74 Identities=15% Similarity=0.344 Sum_probs=65.7
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEE--------EEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceE
Q 001991 360 QGTLVVFNLDSSVSTEELHQIFGIYGEIRE--------IRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 427 (985)
Q Consensus 360 ~~tLfV~NLp~svTeedLrelFs~fG~I~~--------Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~I 427 (985)
...|||.|||.++|.+++.++|+++|.|.. |++..+ -+|-|.|+|...++..-|++.|++..+.|++|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 346999999999999999999999999865 555443 46779999999999999999999999999999
Q ss_pred EEEecc
Q 001991 428 KLEASR 433 (985)
Q Consensus 428 kV~~A~ 433 (985)
+|+.|+
T Consensus 214 rVerAk 219 (382)
T KOG1548|consen 214 RVERAK 219 (382)
T ss_pred EEehhh
Confidence 999884
No 141
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.48 E-value=0.0003 Score=78.91 Aligned_cols=159 Identities=16% Similarity=0.221 Sum_probs=112.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccc-----CcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQF-----GDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 347 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~f-----G~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a 347 (985)
..+..|-.++||+.-++.+|..+|+-. |.+......+...|.|.|.|.+.|.-+.|++ -+...+.++.|.|-.+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 345566778999999999999999733 3334444467888999999999999999995 5667777888877544
Q ss_pred CCCCC---------CC---cccccccceeeecCCCCCCHHHHHHHhhcc----CCEEEEEEc----CCCCcEEEEEEcCH
Q 001991 348 IPKDN---------PS---EKDANQGTLVVFNLDSSVSTEELHQIFGIY----GEIREIRDT----QHKHNHKFIEFYDI 407 (985)
Q Consensus 348 ~pk~~---------~~---~~~~~~~tLfV~NLp~svTeedLrelFs~f----G~I~~Vri~----~~skGfaFVeF~d~ 407 (985)
...+- .. ....++-.|.+++||.++++.++.++|.+- |..+.|-++ ++..|-|||.|..+
T Consensus 137 ~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACE 216 (508)
T ss_pred CchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCH
Confidence 43221 00 111234578889999999999999999732 222333222 33567899999999
Q ss_pred HHHHHHHHHhCCceeCCceEEEEecc
Q 001991 408 RAAETALRTLNRSDVAGKQIKLEASR 433 (985)
Q Consensus 408 edA~kAI~~LNG~~I~Gr~IkV~~A~ 433 (985)
++|+.|+. -|...|+-|-|.+-.+.
T Consensus 217 e~aq~aL~-khrq~iGqRYIElFRST 241 (508)
T KOG1365|consen 217 EDAQFALR-KHRQNIGQRYIELFRST 241 (508)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHh
Confidence 99999998 56666666666554443
No 142
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.44 E-value=0.00014 Score=78.73 Aligned_cols=79 Identities=23% Similarity=0.388 Sum_probs=69.9
Q ss_pred ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 001991 356 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 430 (985)
Q Consensus 356 ~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~-----~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~ 430 (985)
+......+||+|++..+|.+++..+|+.||.|..|.+.. +.++|+||+|.+.+.+++|++ |||..|.|+.|.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 345667899999999999999999999999998766543 468999999999999999999 99999999999999
Q ss_pred eccCc
Q 001991 431 ASRPG 435 (985)
Q Consensus 431 ~A~~k 435 (985)
+.+-.
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 97653
No 143
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.43 E-value=0.00058 Score=64.43 Aligned_cols=81 Identities=19% Similarity=0.194 Sum_probs=65.5
Q ss_pred cceeeecCCCCCCHHHHHHHhhcc--CCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeC----CceEEE
Q 001991 361 GTLVVFNLDSSVSTEELHQIFGIY--GEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVA----GKQIKL 429 (985)
Q Consensus 361 ~tLfV~NLp~svTeedLrelFs~f--G~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~----Gr~IkV 429 (985)
+||.|+|||...|.++|.+++... |...-+.++-+ +.|||||.|.+++.|.+-.+.++|+... .|...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999998763 55544554432 5799999999999999999999999774 688899
Q ss_pred EeccCcchhhhh
Q 001991 430 EASRPGGARRFM 441 (985)
Q Consensus 430 ~~A~~k~~Rrl~ 441 (985)
.||+-.+...++
T Consensus 82 ~yAriQG~~alv 93 (97)
T PF04059_consen 82 SYARIQGKDALV 93 (97)
T ss_pred ehhHhhCHHHHH
Confidence 999876644444
No 144
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.35 E-value=8.6e-05 Score=83.38 Aligned_cols=157 Identities=18% Similarity=0.195 Sum_probs=116.2
Q ss_pred cEEEEecCCCCCCHHHHHHhhcccCcEEEEEec--------cccceEEEEEeCCHHHHHHHHHHccCccccccccccc-c
Q 001991 276 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTA--------CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH-Y 346 (985)
Q Consensus 276 rtLfVgNLP~~vTEedLrelFs~fG~I~sVkit--------gksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~-~ 346 (985)
..|-|.||.+.+|.++++.+|...|+|..+.+- ......|||.|.|...+..|-. |.+.++-++.|.|- |
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 489999999999999999999999999998751 2345689999999999998874 77766666655552 2
Q ss_pred cCCCCC----------------------------CC--cc---------------------cccccceeeecCCCCCCHH
Q 001991 347 SIPKDN----------------------------PS--EK---------------------DANQGTLVVFNLDSSVSTE 375 (985)
Q Consensus 347 a~pk~~----------------------------~~--~~---------------------~~~~~tLfV~NLp~svTee 375 (985)
..+... +. .. ..-.++++|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 111000 00 00 0012589999999999999
Q ss_pred HHHHHhhccCCEEEEEEcC-CCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 001991 376 ELHQIFGIYGEIREIRDTQ-HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 434 (985)
Q Consensus 376 dLrelFs~fG~I~~Vri~~-~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~ 434 (985)
++-+.|..+|+|...++-. ....+|-|+|........|++ ++|.++.-....+....|
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKP 225 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCc
Confidence 9999999999999877643 345688899999999999998 788877644444443333
No 145
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.35 E-value=0.00023 Score=76.96 Aligned_cols=78 Identities=17% Similarity=0.308 Sum_probs=69.1
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
..+...+.+||+|+...+|.+++...|+.||.|..+.+ .+..+||+||+|.+.+.+++|+. |++..|.|+.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 45667899999999999999999999999999975533 56689999999999999999997 9999999999999
Q ss_pred cccC
Q 001991 345 HYSI 348 (985)
Q Consensus 345 ~~a~ 348 (985)
.+..
T Consensus 175 t~~r 178 (231)
T KOG4209|consen 175 TLKR 178 (231)
T ss_pred eeee
Confidence 7654
No 146
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.30 E-value=0.00068 Score=75.60 Aligned_cols=78 Identities=22% Similarity=0.440 Sum_probs=69.0
Q ss_pred CCcEEE-EecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001991 274 PSRTLF-VRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 347 (985)
Q Consensus 274 ~srtLf-VgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a 347 (985)
+..++| |++|+.++++++|+..|..+|.|..+++ ++..+|||||.|.+...+..|+.. +...+.++.+.+.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 445555 9999999999999999999999999976 678899999999999999999976 889999999999988
Q ss_pred CCCCC
Q 001991 348 IPKDN 352 (985)
Q Consensus 348 ~pk~~ 352 (985)
.+...
T Consensus 262 ~~~~~ 266 (285)
T KOG4210|consen 262 EPRPK 266 (285)
T ss_pred CCCcc
Confidence 76643
No 147
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.26 E-value=0.00045 Score=82.23 Aligned_cols=166 Identities=13% Similarity=0.020 Sum_probs=118.9
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhccc-Cc---EEEEEeccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQF-GD---IRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~f-G~---I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
.-....+.+-+++.+.+.++.+++++|... -. |..-.+.+...|-++|.|....++++|++ -|...+..|.+.|.
T Consensus 306 qvv~d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~ 384 (944)
T KOG4307|consen 306 QVVSDKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTG 384 (944)
T ss_pred cccchhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeec
Confidence 334455667778999999999999999732 22 22223344557999999999999999985 55555555555552
Q ss_pred ccCCC------------C-----------------CC------CcccccccceeeecCCCCCCHHHHHHHhhccCCEEE-
Q 001991 346 YSIPK------------D-----------------NP------SEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE- 389 (985)
Q Consensus 346 ~a~pk------------~-----------------~~------~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~- 389 (985)
..... . .. .-.......|||..||..+++.++.++|...-.|++
T Consensus 385 P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~ 464 (944)
T KOG4307|consen 385 PPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDF 464 (944)
T ss_pred CCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhhe
Confidence 21100 0 00 000112458999999999999999999998777766
Q ss_pred EEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcc
Q 001991 390 IRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 390 Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~ 436 (985)
|.+.+- .++-|||+|..++++.+|...-+...++.+.|+|.-...+.
T Consensus 465 I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~ 515 (944)
T KOG4307|consen 465 IELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYA 515 (944)
T ss_pred eEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHH
Confidence 666533 35679999999999999998888888899999998765443
No 148
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.18 E-value=0.0011 Score=60.76 Aligned_cols=69 Identities=20% Similarity=0.385 Sum_probs=48.7
Q ss_pred cEEEEecCCCCCCHHHHH----HhhcccC-cEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001991 276 RTLFVRNINSNVEDSELK----ALFEQFG-DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 349 (985)
Q Consensus 276 rtLfVgNLP~~vTEedLr----elFs~fG-~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~p 349 (985)
..|||.|||.+.+...|+ .++..|| .|..| ..+.|+|.|.+.+.|.+|.+.|+|..+.|++|.|.|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 469999999999877655 6666886 66655 247899999999999999999999999999999998743
No 149
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.17 E-value=0.0004 Score=74.66 Aligned_cols=77 Identities=19% Similarity=0.358 Sum_probs=66.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEE-----EeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI-----YTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV-----kitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
....-+||.+.|.-+++++-|...|.+|-..... +-+++++||+||.|.+.+++..|+++|+|+.++.+.|.+.-
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 3456789999999999999999999988654332 23799999999999999999999999999999999998865
Q ss_pred cC
Q 001991 347 SI 348 (985)
Q Consensus 347 a~ 348 (985)
+.
T Consensus 267 S~ 268 (290)
T KOG0226|consen 267 SE 268 (290)
T ss_pred hh
Confidence 53
No 150
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.0018 Score=75.67 Aligned_cols=159 Identities=15% Similarity=0.177 Sum_probs=96.0
Q ss_pred CCcccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCC----hhhhhccCCCC---eeeeecCC
Q 001991 145 SLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPD----EDDLFSGVTDD---MGHNFQAN 216 (985)
Q Consensus 145 sl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpd----edDL~sG~SkG---fGFV~ff~ 216 (985)
...+||++.|++ ++++.+... | ..||.+.-| ....-....+| |-|..| +
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~--------------F--------~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvF-e 314 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINAS--------------F--------GQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVF-E 314 (520)
T ss_pred cccceeecCCCccccHHHHHhh--------------c--------ccccceEeecCCCccccccCCCCCcccEEEEEe-c
Confidence 345799999999 888888877 7 445544431 11111223555 888884 4
Q ss_pred Chhhhh-hhHHHhccCC-eeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHH
Q 001991 217 TVDDLE-DFDLFSSGGG-MELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKA 294 (985)
Q Consensus 217 t~Edae-e~~ai~~~nG-~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLre 294 (985)
.+..+. -+++.....+ ..|. ++......... .+......++....+....-.+.+||||++||.-++.++|..
T Consensus 315 ~E~sV~~Ll~aC~~~~~~~yf~----vss~~~k~k~V-QIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~ 389 (520)
T KOG0129|consen 315 DERSVQSLLSACSEGEGNYYFK----VSSPTIKDKEV-QIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAM 389 (520)
T ss_pred chHHHHHHHHHHhhcccceEEE----EecCcccccce-eEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHH
Confidence 444444 2233332222 1221 11111111000 000011111222223445667889999999999999999999
Q ss_pred hhc-ccCcEEEEEe--c---cccceEEEEEeCCHHHHHHHHHH
Q 001991 295 LFE-QFGDIRTIYT--A---CKHRGFVMISYYDIRAARNAMKA 331 (985)
Q Consensus 295 lFs-~fG~I~sVki--t---gksrGfAFV~F~d~esA~kAi~~ 331 (985)
+|+ -||.|..+-| + +-.+|-|=|+|.+..+-.+||.+
T Consensus 390 imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 390 IMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred HHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 999 8999998755 2 45789999999999999999963
No 151
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.09 E-value=0.001 Score=63.67 Aligned_cols=78 Identities=22% Similarity=0.379 Sum_probs=49.1
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCc-----eeCCceEEEEeccCc
Q 001991 361 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRS-----DVAGKQIKLEASRPG 435 (985)
Q Consensus 361 ~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~-----~I~Gr~IkV~~A~~k 435 (985)
..|+|.+++..++.++|++.|++||.|..|.+.. ....|||.|.+.++|++|+..+... .|.+..+.++.-.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~-G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLeGe 80 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR-GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLEGE 80 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T-T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---HH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC-CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECCCH
Confidence 3588999999999999999999999999998765 3558999999999999999887543 677888877765544
Q ss_pred chhh
Q 001991 436 GARR 439 (985)
Q Consensus 436 ~~Rr 439 (985)
++..
T Consensus 81 eE~~ 84 (105)
T PF08777_consen 81 EEEE 84 (105)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 152
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.93 E-value=0.00083 Score=74.36 Aligned_cols=86 Identities=26% Similarity=0.324 Sum_probs=68.1
Q ss_pred CcEEEEecCCCCCCHHHH------HHhhcccCcEEEEEecccc------ce--EEEEEeCCHHHHHHHHHHccCcccccc
Q 001991 275 SRTLFVRNINSNVEDSEL------KALFEQFGDIRTIYTACKH------RG--FVMISYYDIRAARNAMKALQNKPLRRR 340 (985)
Q Consensus 275 srtLfVgNLP~~vTEedL------relFs~fG~I~sVkitgks------rG--fAFV~F~d~esA~kAi~~Lng~~I~Gr 340 (985)
..-+||-+||+.+..+++ .++|.+||.|..|.+.++- .+ =.||+|.+.|+|.+||.+.+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 467899999999888773 2799999999998763321 12 249999999999999999999999999
Q ss_pred cccccccCCCCCCCcccccccceeeecCC
Q 001991 341 KLDIHYSIPKDNPSEKDANQGTLVVFNLD 369 (985)
Q Consensus 341 ~L~V~~a~pk~~~~~~~~~~~tLfV~NLp 369 (985)
.|+..|...| -++-|++|++
T Consensus 194 ~lkatYGTTK---------YCtsYLRn~~ 213 (480)
T COG5175 194 VLKATYGTTK---------YCTSYLRNAV 213 (480)
T ss_pred eEeeecCchH---------HHHHHHcCCC
Confidence 9999887543 3456666653
No 153
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.90 E-value=0.0012 Score=80.59 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=66.5
Q ss_pred CcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001991 275 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 349 (985)
Q Consensus 275 srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~p 349 (985)
...|+|+|.|...|.++|+.++..+|.+.++.+ .++.+|.|+|.|.+..+|.+++.......+..+.+.|..+.|
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 356899999999999999999999999998864 688999999999999999999988888888888888877655
No 154
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.78 E-value=0.0043 Score=68.90 Aligned_cols=94 Identities=18% Similarity=0.301 Sum_probs=71.2
Q ss_pred cccceeeecCCCCCCHHH----H--HHHhhccCCEEEEEEcCCC------Cc-E-EEEEEcCHHHHHHHHHHhCCceeCC
Q 001991 359 NQGTLVVFNLDSSVSTEE----L--HQIFGIYGEIREIRDTQHK------HN-H-KFIEFYDIRAAETALRTLNRSDVAG 424 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeed----L--relFs~fG~I~~Vri~~~s------kG-f-aFVeF~d~edA~kAI~~LNG~~I~G 424 (985)
..+-+||-+|++.+-.|+ | .++|.+||+|..|.+.++- .+ + .||+|.+.|+|.+||.+.+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 455789999999887776 2 5799999999998875431 12 3 4999999999999999999999999
Q ss_pred ceEEEEeccCcchhh-hhhhhhhhccCCCcc
Q 001991 425 KQIKLEASRPGGARR-FMVQSEQEQDDLNLC 454 (985)
Q Consensus 425 r~IkV~~A~~k~~Rr-l~qq~eq~q~e~nLy 454 (985)
|.|+..|...|---. |+ -.+++...-+|
T Consensus 193 r~lkatYGTTKYCtsYLR--n~~CpNp~CMy 221 (480)
T COG5175 193 RVLKATYGTTKYCTSYLR--NAVCPNPDCMY 221 (480)
T ss_pred ceEeeecCchHHHHHHHc--CCCCCCCCeee
Confidence 999999987755333 22 23444444444
No 155
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.54 E-value=0.0029 Score=72.29 Aligned_cols=73 Identities=30% Similarity=0.411 Sum_probs=59.5
Q ss_pred CCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC------------------CCcEEEEEEcCHHHH
Q 001991 349 PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH------------------KHNHKFIEFYDIRAA 410 (985)
Q Consensus 349 pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~------------------skGfaFVeF~d~edA 410 (985)
|-.+........++|.+.|||.+-.-+.|.++|+.+|.|+.|+|..- .+-+|+|+|+..+.|
T Consensus 220 Plp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A 299 (484)
T KOG1855|consen 220 PLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAA 299 (484)
T ss_pred CCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHH
Confidence 33333444567889999999999999999999999999999998532 134699999999999
Q ss_pred HHHHHHhCCce
Q 001991 411 ETALRTLNRSD 421 (985)
Q Consensus 411 ~kAI~~LNG~~ 421 (985)
.+|.+.||...
T Consensus 300 ~KA~e~~~~e~ 310 (484)
T KOG1855|consen 300 RKARELLNPEQ 310 (484)
T ss_pred HHHHHhhchhh
Confidence 99999886543
No 156
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.43 E-value=0.0064 Score=58.21 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=39.6
Q ss_pred cEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCc
Q 001991 276 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNK 335 (985)
Q Consensus 276 rtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~ 335 (985)
..|.|.+++..++.++|++.|++||+|..|.. .+...-|||.|.+.++|++|++.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~-~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDF-SRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE---TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEe-cCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 46899999999999999999999999999988 334458999999999999999876544
No 157
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.40 E-value=0.0082 Score=57.07 Aligned_cols=73 Identities=19% Similarity=0.274 Sum_probs=54.0
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEE------------EcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCc-
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIR------------DTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGK- 425 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vr------------i~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr- 425 (985)
....|.|.+.|+. ....+.+.|++||+|.+.. -.+...++..|+|+++.+|.+||+ .||..|.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3456899999998 4567788999999998875 223457799999999999999999 899999885
Q ss_pred eEEEEecc
Q 001991 426 QIKLEASR 433 (985)
Q Consensus 426 ~IkV~~A~ 433 (985)
.+-|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 55577764
No 158
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.18 E-value=0.011 Score=49.86 Aligned_cols=52 Identities=23% Similarity=0.374 Sum_probs=43.0
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHH
Q 001991 361 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETAL 414 (985)
Q Consensus 361 ~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI 414 (985)
+.|-|.+.+.+..+ .+...|..||+|..+.+. ....+.||+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 46788888877664 455588899999999876 34779999999999999995
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.14 E-value=0.0099 Score=50.04 Aligned_cols=52 Identities=21% Similarity=0.451 Sum_probs=43.5
Q ss_pred cEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHH
Q 001991 276 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAM 329 (985)
Q Consensus 276 rtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi 329 (985)
+.|-|.+.+++..+ .+...|..||+|..+.++ ....+.+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 57889999986664 455589999999999984 55779999999999999985
No 160
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.11 E-value=0.005 Score=70.45 Aligned_cols=78 Identities=26% Similarity=0.384 Sum_probs=61.4
Q ss_pred CCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccc------------------cceEEEEEeCCHHHHHHH
Q 001991 267 EHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACK------------------HRGFVMISYYDIRAARNA 328 (985)
Q Consensus 267 e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgk------------------srGfAFV~F~d~esA~kA 328 (985)
+...++.++++|.+-|||.+-.-+.|.++|+.+|.|..|++... .+-+|+|+|+..+.|.+|
T Consensus 223 ~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA 302 (484)
T KOG1855|consen 223 EFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKA 302 (484)
T ss_pred CccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHH
Confidence 33446679999999999999999999999999999999987111 245899999999999999
Q ss_pred HHHccCcccccccccc
Q 001991 329 MKALQNKPLRRRKLDI 344 (985)
Q Consensus 329 i~~Lng~~I~Gr~L~V 344 (985)
.+.|+...-...-|+|
T Consensus 303 ~e~~~~e~~wr~glkv 318 (484)
T KOG1855|consen 303 RELLNPEQNWRMGLKV 318 (484)
T ss_pred HHhhchhhhhhhcchh
Confidence 9877654433333333
No 161
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.03 E-value=0.0041 Score=67.18 Aligned_cols=68 Identities=22% Similarity=0.393 Sum_probs=60.0
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCC---------------CcE--EEEEEcCHHHHHHHHHHhCCce
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHK---------------HNH--KFIEFYDIRAAETALRTLNRSD 421 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~s---------------kGf--aFVeF~d~edA~kAI~~LNG~~ 421 (985)
..+.||+++||+.+....|+++|+.||.|-.|.+.+.. ..| |+|+|.+...|.+....||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 56799999999999999999999999999999886431 112 8999999999999999999999
Q ss_pred eCCce
Q 001991 422 VAGKQ 426 (985)
Q Consensus 422 I~Gr~ 426 (985)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99865
No 162
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.84 E-value=0.011 Score=64.12 Aligned_cols=89 Identities=22% Similarity=0.299 Sum_probs=73.7
Q ss_pred HHHHHHHHHccCcccccccccccccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC----CCCc
Q 001991 323 RAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ----HKHN 398 (985)
Q Consensus 323 esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~----~skG 398 (985)
.-|..|..+|++....++.++|.|+.. ..|||.||..-++.|.|.+.|+.||.|....+.- ...+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~-----------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~ 73 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH-----------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTR 73 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc-----------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccc
Confidence 347777788999999999999999853 4799999999999999999999999997733322 2445
Q ss_pred EEEEEEcCHHHHHHHHHHhCCcee
Q 001991 399 HKFIEFYDIRAAETALRTLNRSDV 422 (985)
Q Consensus 399 faFVeF~d~edA~kAI~~LNG~~I 422 (985)
-++|+|...-.|.+|++.++-.-+
T Consensus 74 eg~v~~~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 74 EGIVEFAKKPNARKAARRCREGGF 97 (275)
T ss_pred cchhhhhcchhHHHHHHHhccCcc
Confidence 789999999999999998754433
No 163
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.78 E-value=0.0082 Score=67.65 Aligned_cols=78 Identities=21% Similarity=0.282 Sum_probs=67.5
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEE--------EEEc-----CCCCcEEEEEEcCHHHHHHHHHHhCCceeCCc
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIRE--------IRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGK 425 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~--------Vri~-----~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr 425 (985)
...+|||.+|+..+++++|.++|.++|.|.. |.+. ...|+-|.|.|.|...|+.|+.-++++.+.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 4459999999999999999999999999865 2222 23678899999999999999999999999999
Q ss_pred eEEEEeccCcc
Q 001991 426 QIKLEASRPGG 436 (985)
Q Consensus 426 ~IkV~~A~~k~ 436 (985)
+|+|.++..+.
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99999987654
No 164
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.78 E-value=0.0087 Score=67.46 Aligned_cols=79 Identities=20% Similarity=0.278 Sum_probs=69.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEE-------------eccccceEEEEEeCCHHHHHHHHHHccCcccc
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY-------------TACKHRGFVMISYYDIRAARNAMKALQNKPLR 338 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVk-------------itgksrGfAFV~F~d~esA~kAi~~Lng~~I~ 338 (985)
....-+|||-+||..+++.+|.++|.+||.|..=+ .+.+.|+-|.|+|.+...|+.|+..++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44567999999999999999999999999886431 26789999999999999999999999999999
Q ss_pred cccccccccCCC
Q 001991 339 RRKLDIHYSIPK 350 (985)
Q Consensus 339 Gr~L~V~~a~pk 350 (985)
+..|+|..+..+
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 999999877544
No 165
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.77 E-value=0.011 Score=72.87 Aligned_cols=81 Identities=25% Similarity=0.369 Sum_probs=71.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCccccc--ccccccccC
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSI 348 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~G--r~L~V~~a~ 348 (985)
...+.+.+||++|.+.+....|...|..||.|..|.+ ....-||||.|++...|+.|++.|.|..|.+ +.+.|.|+.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy-~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY-RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeec-ccCCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 4457899999999999999999999999999999988 4556699999999999999999999999986 678888886
Q ss_pred CCCC
Q 001991 349 PKDN 352 (985)
Q Consensus 349 pk~~ 352 (985)
+...
T Consensus 530 ~~~~ 533 (975)
T KOG0112|consen 530 PPGA 533 (975)
T ss_pred CCCC
Confidence 5543
No 166
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=95.66 E-value=0.0057 Score=69.52 Aligned_cols=74 Identities=19% Similarity=0.406 Sum_probs=61.6
Q ss_pred CceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEe-cccccccce-eEEEEEecCCchhhHHHHHHhcCCcccCCC
Q 001991 809 SRTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYL-PIDFKNKCN-VGYAFINMIDPRQIIPFHQAFNGKKWEKFN 883 (985)
Q Consensus 809 ~rTTvMirNIPnk~t~~~L~~~id~~~~g~yDF~Yl-piDf~~~~N-~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~ 883 (985)
....|.||++|+++|.+.|++.||- +...+.|-|. |-|+....+ .+.|||||..+.++..|.+.|.|+.+-.-.
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p-~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~K 81 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINP-FPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNK 81 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCC-CccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCC
Confidence 4567999999999999999999998 7788888754 466654444 677999999999999999999999876443
No 167
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.50 E-value=0.0069 Score=65.59 Aligned_cols=62 Identities=27% Similarity=0.370 Sum_probs=51.5
Q ss_pred HHHHHHhh-ccCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcc
Q 001991 375 EELHQIFG-IYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 375 edLrelFs-~fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~ 436 (985)
++|...|+ +||+|+++.|..+ -.|-+||.|...++|++|++.||+..+.|++|..++..-..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 45555666 8999999876543 35679999999999999999999999999999999976433
No 168
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.46 E-value=0.03 Score=61.61 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=52.1
Q ss_pred HHHHHHHhhccCCEEEEEEcCC------CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCc
Q 001991 374 TEELHQIFGIYGEIREIRDTQH------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 435 (985)
Q Consensus 374 eedLrelFs~fG~I~~Vri~~~------skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k 435 (985)
++++++.+++||+|..|.|... ..--.||+|...++|.+|+-.|||+.|+|+.++..|..-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 5788999999999998766432 1123799999999999999999999999999999987643
No 169
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.41 E-value=0.0092 Score=64.57 Aligned_cols=69 Identities=17% Similarity=0.401 Sum_probs=59.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEec-------------cccce----EEEEEeCCHHHHHHHHHHccCc
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTA-------------CKHRG----FVMISYYDIRAARNAMKALQNK 335 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkit-------------gksrG----fAFV~F~d~esA~kAi~~Lng~ 335 (985)
.....||+++||+.++-.-|+++|+.||.|-.|++. +.++. -|+|+|.+...|+++...||+.
T Consensus 72 rk~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 72 RKTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred ccceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 367899999999999999999999999999999762 11221 3889999999999999999999
Q ss_pred cccccc
Q 001991 336 PLRRRK 341 (985)
Q Consensus 336 ~I~Gr~ 341 (985)
.|.|++
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999875
No 170
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.99 E-value=0.069 Score=53.98 Aligned_cols=77 Identities=29% Similarity=0.366 Sum_probs=54.4
Q ss_pred cccccceeeecCC-----CCCCH----HHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceE
Q 001991 357 DANQGTLVVFNLD-----SSVST----EELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 427 (985)
Q Consensus 357 ~~~~~tLfV~NLp-----~svTe----edLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~I 427 (985)
.++..||.|.=+. ...-+ ++|.+.|..||+|.=||+.. +.-+|+|.+-+.|.+|+. |+|.+++|+.|
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g~~l 99 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNGRTL 99 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETTEEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECCEEE
Confidence 3456677777555 11222 36888899999998888775 478999999999999999 99999999999
Q ss_pred EEEeccCcch
Q 001991 428 KLEASRPGGA 437 (985)
Q Consensus 428 kV~~A~~k~~ 437 (985)
+|.+..+.-.
T Consensus 100 ~i~LKtpdW~ 109 (146)
T PF08952_consen 100 KIRLKTPDWL 109 (146)
T ss_dssp EEEE------
T ss_pred EEEeCCccHH
Confidence 9998776543
No 171
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.85 E-value=0.056 Score=65.19 Aligned_cols=71 Identities=18% Similarity=0.227 Sum_probs=60.6
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEE-EEEEcC----CCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 361 GTLVVFNLDSSVSTEELHQIFGIYGEIR-EIRDTQ----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 361 ~tLfV~NLp~svTeedLrelFs~fG~I~-~Vri~~----~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
+.|-+.|+|.+++-+||.++|..|-.+- +|++-. ...|-|.|.|++.++|.+|...|+++.|..++|++..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3788999999999999999999997653 344422 2467899999999999999999999999999999864
No 172
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.56 E-value=0.062 Score=51.18 Aligned_cols=72 Identities=13% Similarity=0.199 Sum_probs=51.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhcccCcEEEEE------------eccccceEEEEEeCCHHHHHHHHHHccCccccccc
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIY------------TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK 341 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVk------------itgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~ 341 (985)
..+-|.|=+.|+. ....|.+.|++||+|.+.. -......+..|.|.++.+|++||. .||..|.|.-
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 4567899999987 6677888999999998875 112345699999999999999994 8999998854
Q ss_pred c-ccccc
Q 001991 342 L-DIHYS 347 (985)
Q Consensus 342 L-~V~~a 347 (985)
| -|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 4 35554
No 173
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.38 E-value=0.11 Score=61.61 Aligned_cols=75 Identities=17% Similarity=0.226 Sum_probs=59.8
Q ss_pred ccccceeeecCCCCCC------HHHHHHHhhccCCEEEEEEcC----CCCcEEEEEEcCHHHHHHHHHHhCCceeC-Cce
Q 001991 358 ANQGTLVVFNLDSSVS------TEELHQIFGIYGEIREIRDTQ----HKHNHKFIEFYDIRAAETALRTLNRSDVA-GKQ 426 (985)
Q Consensus 358 ~~~~tLfV~NLp~svT------eedLrelFs~fG~I~~Vri~~----~skGfaFVeF~d~edA~kAI~~LNG~~I~-Gr~ 426 (985)
.....|+|.|+|.--. ..-|.++|+++|+|..+.++. ..+||.|++|.+..+|+.|++.|||+.|. .++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3455788999885332 345778999999999987763 36789999999999999999999999885 677
Q ss_pred EEEEec
Q 001991 427 IKLEAS 432 (985)
Q Consensus 427 IkV~~A 432 (985)
..|...
T Consensus 136 f~v~~f 141 (698)
T KOG2314|consen 136 FFVRLF 141 (698)
T ss_pred EEeehh
Confidence 777554
No 174
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.05 E-value=0.31 Score=47.29 Aligned_cols=85 Identities=20% Similarity=0.278 Sum_probs=65.9
Q ss_pred CceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEecccccccceeEEEEEecCCchhhHHHHHHhcCCcccCCCCccEE
Q 001991 809 SRTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFKNKCNVGYAFINMIDPRQIIPFHQAFNGKKWEKFNSEKVA 888 (985)
Q Consensus 809 ~rTTvMirNIPnk~t~~~L~~~id~~~~g~yDF~YlpiDf~~~~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~K~~ 888 (985)
.+|+|-+=-+|+.++...++..+-+.+.....-+.+--|.. -|.-=+-|-|.++++|..||+.|||+++...-. .+|
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEp-E~C 87 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNSLEP-ETC 87 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCCCCC-cee
Confidence 45666666889999988777667677777777666655644 466678999999999999999999999886655 459
Q ss_pred EEEe-eccc
Q 001991 889 SLAY-ARIQ 896 (985)
Q Consensus 889 ~v~y-A~iQ 896 (985)
.|.| .+||
T Consensus 88 hvvfV~~Ve 96 (110)
T PF07576_consen 88 HVVFVKSVE 96 (110)
T ss_pred EEEEEEEEE
Confidence 9999 4555
No 175
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.05 E-value=0.11 Score=61.61 Aligned_cols=66 Identities=24% Similarity=0.438 Sum_probs=54.5
Q ss_pred CCCcEEEEecCCCCCCH-------HHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCccccc
Q 001991 273 HPSRTLFVRNINSNVED-------SELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRR 339 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTE-------edLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~G 339 (985)
.-...|+|-|+|- |.. .-|..+|+++|+|..+.+ .+..+||.|++|.+..+|+.|++.|||+.|.-
T Consensus 56 g~D~vVvv~g~Pv-V~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 56 GFDSVVVVDGAPV-VGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred CcceEEEECCCcc-cChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 4557899999985 322 235578999999998875 56799999999999999999999999988764
No 176
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=93.91 E-value=0.055 Score=61.59 Aligned_cols=72 Identities=19% Similarity=0.391 Sum_probs=60.8
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC--------CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 361 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH--------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 361 ~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~--------skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
+.|.|.||.+.++.++++.+|.-.|+|.++++++. ....|||.|.|...+..|.. |.++.+=++.|.|-++
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 47999999999999999999999999999999874 23479999999999998877 7777777777776655
Q ss_pred c
Q 001991 433 R 433 (985)
Q Consensus 433 ~ 433 (985)
-
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 3
No 177
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.78 E-value=0.048 Score=62.51 Aligned_cols=76 Identities=26% Similarity=0.363 Sum_probs=62.7
Q ss_pred cceeeecCCCCCCHHHHHHHhhccC--CEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCc-eeCCceEEEEeccCcch
Q 001991 361 GTLVVFNLDSSVSTEELHQIFGIYG--EIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRS-DVAGKQIKLEASRPGGA 437 (985)
Q Consensus 361 ~tLfV~NLp~svTeedLrelFs~fG--~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~-~I~Gr~IkV~~A~~k~~ 437 (985)
..||++||.+.++..+|..+|...- .-..+. -..||+||.+.+..-|.+|++.++|+ ++.|+++.|..+.++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl---~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL---VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee---eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 3689999999999999999998641 111111 14689999999999999999999997 78999999999998876
Q ss_pred hh
Q 001991 438 RR 439 (985)
Q Consensus 438 Rr 439 (985)
|.
T Consensus 79 rs 80 (584)
T KOG2193|consen 79 RS 80 (584)
T ss_pred Hh
Confidence 54
No 178
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.40 E-value=0.25 Score=57.43 Aligned_cols=81 Identities=26% Similarity=0.317 Sum_probs=70.5
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEecccccccceeEEEEEecCCchhhHHHHHHhcCCcccCCCCccEEE
Q 001991 810 RTTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFIYLPIDFKNKCNVGYAFINMIDPRQIIPFHQAFNGKKWEKFNSEKVAS 889 (985)
Q Consensus 810 rTTvMirNIPnk~t~~~L~~~id~~~~g~yDF~YlpiDf~~~~N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~K~~~ 889 (985)
-|+|-|=-+|+.+|..+|+..+...+.-=-|+-.++ ..--|---+-|-|.+..+|..||+.|||+.+...-.+ +|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivR---d~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e-~Ch 149 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVR---DGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPE-VCH 149 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEee---cCCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCcc-cee
Confidence 788899999999999999999998887777888888 3455666689999999999999999999998877666 999
Q ss_pred EEeec
Q 001991 890 LAYAR 894 (985)
Q Consensus 890 v~yA~ 894 (985)
|-|+.
T Consensus 150 ll~V~ 154 (493)
T KOG0804|consen 150 LLYVD 154 (493)
T ss_pred EEEEE
Confidence 99964
No 179
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=92.97 E-value=0.074 Score=59.66 Aligned_cols=73 Identities=16% Similarity=0.262 Sum_probs=60.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCc--EEEE-----EeccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGD--IRTI-----YTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~--I~sV-----kitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
+...-.+||+||-+.+|++||.+.....|- |.++ +..+.+||||+|...+..+.++-++.|-.+.|.|..-.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 344578999999999999999998887773 3333 247899999999999999999999999989998876554
No 180
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=92.79 E-value=0.042 Score=59.73 Aligned_cols=57 Identities=19% Similarity=0.320 Sum_probs=47.3
Q ss_pred HHHHhhc-ccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001991 291 ELKALFE-QFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 347 (985)
Q Consensus 291 dLrelFs-~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a 347 (985)
+|...|+ +||+|+.+++ ...-.|-+||.|...++|++|+..||+..+.|++|...+.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 3444444 9999999865 2235789999999999999999999999999999998775
No 181
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=91.83 E-value=0.11 Score=61.82 Aligned_cols=77 Identities=21% Similarity=0.315 Sum_probs=63.0
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhc-ccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccc---ccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFE-QFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR---RRKLDIH 345 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs-~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~---Gr~L~V~ 345 (985)
.....+..|||.||-.-.|.-+|++++. .+|.|....| .+-+..|||.|.+.++|.....+|+|..+- .+.|.+.
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH-HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 3566789999999999999999999999 6777777766 567789999999999999999999997653 3444444
Q ss_pred cc
Q 001991 346 YS 347 (985)
Q Consensus 346 ~a 347 (985)
|.
T Consensus 518 f~ 519 (718)
T KOG2416|consen 518 FV 519 (718)
T ss_pred ec
Confidence 43
No 182
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.57 E-value=0.62 Score=46.99 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=57.6
Q ss_pred cccccceeeecCCCCC----CHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 357 DANQGTLVVFNLDSSV----STEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 357 ~~~~~tLfV~NLp~sv----TeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
+.+-.||.|+=|..++ +-..+.+..+.||+|.+|...+ +.-|.|.|.|..+|-+|+.++.. ...|..+++.|-
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 4456688887665544 3344555667899999998775 67899999999999999998876 667888888886
Q ss_pred cC
Q 001991 433 RP 434 (985)
Q Consensus 433 ~~ 434 (985)
++
T Consensus 160 qr 161 (166)
T PF15023_consen 160 QR 161 (166)
T ss_pred cc
Confidence 53
No 183
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=91.23 E-value=0.17 Score=60.36 Aligned_cols=79 Identities=15% Similarity=0.250 Sum_probs=66.2
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhc-cCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCcee---CCceEEEEec
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGI-YGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDV---AGKQIKLEAS 432 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~-fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I---~Gr~IkV~~A 432 (985)
....+.|+|.||-.-+|.-+|++++++ .|.|.+. +|-+-+..|||.|.+.++|.+.+.+|||... +++.|.+.|.
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH-HHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 445679999999999999999999995 5566665 5545578999999999999999999999865 6799999998
Q ss_pred cCcc
Q 001991 433 RPGG 436 (985)
Q Consensus 433 ~~k~ 436 (985)
...+
T Consensus 520 ~~de 523 (718)
T KOG2416|consen 520 RADE 523 (718)
T ss_pred chhH
Confidence 7544
No 184
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=90.87 E-value=0.39 Score=48.72 Aligned_cols=73 Identities=23% Similarity=0.385 Sum_probs=52.3
Q ss_pred CCCcEEEEecCCC------CCCH---HHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCccccccccc
Q 001991 273 HPSRTLFVRNINS------NVED---SELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 343 (985)
Q Consensus 273 ~~srtLfVgNLP~------~vTE---edLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~ 343 (985)
.+..||.|.=+.+ ..++ .+|.+.|..||+|.-++.. .+.-+|+|.+.+.|-+|+ .++|..+.|+.|.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv---~~~mwVTF~dg~sALaal-s~dg~~v~g~~l~ 100 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV---GDTMWVTFRDGQSALAAL-SLDGIQVNGRTLK 100 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE---TTCEEEEESSCHHHHHHH-HGCCSEETTEEEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe---CCeEEEEECccHHHHHHH-ccCCcEECCEEEE
Confidence 4567777776651 2222 3677889999999888762 357899999999999999 5999999999999
Q ss_pred ccccCC
Q 001991 344 IHYSIP 349 (985)
Q Consensus 344 V~~a~p 349 (985)
|....|
T Consensus 101 i~LKtp 106 (146)
T PF08952_consen 101 IRLKTP 106 (146)
T ss_dssp EEE---
T ss_pred EEeCCc
Confidence 976554
No 185
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=90.04 E-value=0.19 Score=56.72 Aligned_cols=95 Identities=15% Similarity=0.246 Sum_probs=72.9
Q ss_pred cccceeeecCCCCCCHHHHH---HHhhccCCEEEEEEcCCC--------CcEEEEEEcCHHHHHHHHHHhCCceeCCceE
Q 001991 359 NQGTLVVFNLDSSVSTEELH---QIFGIYGEIREIRDTQHK--------HNHKFIEFYDIRAAETALRTLNRSDVAGKQI 427 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLr---elFs~fG~I~~Vri~~~s--------kGfaFVeF~d~edA~kAI~~LNG~~I~Gr~I 427 (985)
...-+||-+|+..+.++.+. +.|.+||.|..|.+..+. ..-++|+|...++|..||...+|..+.|+.|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 34567888888877655553 488999999998876532 1138999999999999999999999999999
Q ss_pred EEEeccCcchhhhhhhhhhhccCCCcc
Q 001991 428 KLEASRPGGARRFMVQSEQEQDDLNLC 454 (985)
Q Consensus 428 kV~~A~~k~~Rrl~qq~eq~q~e~nLy 454 (985)
+..+..++-.-. ..+.+.++....+|
T Consensus 156 ka~~gttkycs~-~l~~~~c~~~~cmy 181 (327)
T KOG2068|consen 156 KASLGTTKYCSF-YLRNDICQNPDCMY 181 (327)
T ss_pred HHhhCCCcchhH-HhhhhcccCccccc
Confidence 999988776443 22355666666777
No 186
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=89.97 E-value=0.81 Score=46.22 Aligned_cols=76 Identities=21% Similarity=0.298 Sum_probs=57.6
Q ss_pred CCCCCCcEEEEecCCCCCC----HHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVE----DSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vT----EedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
..+.+-.+|.|+=|..++. ...+...++.||+|.+|...| +-.|.|.|+|..+|-+|+.+++. ...|..+++.
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 3566788999977666543 344556788999999998854 45799999999999999998876 5566666666
Q ss_pred ccC
Q 001991 346 YSI 348 (985)
Q Consensus 346 ~a~ 348 (985)
|..
T Consensus 158 Wqq 160 (166)
T PF15023_consen 158 WQQ 160 (166)
T ss_pred ccc
Confidence 543
No 187
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=89.79 E-value=1.2 Score=41.37 Aligned_cols=56 Identities=16% Similarity=0.323 Sum_probs=43.7
Q ss_pred CcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccC
Q 001991 275 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN 334 (985)
Q Consensus 275 srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng 334 (985)
....+|. +|..+...||.++|+.||.|.--.+ ...-|||...+.+.|..|+..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi---~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI---NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEE---CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEE---cCCcEEEEeecHHHHHHHHHHhcc
Confidence 3456666 9999999999999999999987777 345799999999999999987753
No 188
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=88.74 E-value=0.61 Score=51.70 Aligned_cols=75 Identities=17% Similarity=0.381 Sum_probs=55.7
Q ss_pred CCcEEEEecC--CCCCC---HHHHHHhhcccCcEEEEEe---ccc---cceEEEEEeCCHHHHHHHHHHccCcccccccc
Q 001991 274 PSRTLFVRNI--NSNVE---DSELKALFEQFGDIRTIYT---ACK---HRGFVMISYYDIRAARNAMKALQNKPLRRRKL 342 (985)
Q Consensus 274 ~srtLfVgNL--P~~vT---EedLrelFs~fG~I~sVki---tgk---srGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L 342 (985)
+++.|.++|. +-.++ ++++++-.++||.|..|.+ .+. ..--.||+|...++|.+|+-.|||..|+|+.+
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceee
Confidence 3445555554 22344 3577889999999998865 111 12258999999999999999999999999999
Q ss_pred cccccC
Q 001991 343 DIHYSI 348 (985)
Q Consensus 343 ~V~~a~ 348 (985)
...|..
T Consensus 360 ~A~Fyn 365 (378)
T KOG1996|consen 360 SACFYN 365 (378)
T ss_pred eheecc
Confidence 887753
No 189
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=88.55 E-value=0.47 Score=55.60 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=58.3
Q ss_pred eeeecCCCCC-CHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcc
Q 001991 363 LVVFNLDSSV-STEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 363 LfV~NLp~sv-TeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~ 436 (985)
|-+.-.+... +-++|...|.+||+|..|.+.-. .-.|.|+|.+..+|-+|.. .++..|+++.|+|.|-.+..
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 3344444444 56889999999999999876433 4579999999999988887 89999999999999998755
No 190
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=88.49 E-value=0.75 Score=54.82 Aligned_cols=74 Identities=20% Similarity=0.232 Sum_probs=58.2
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhc--ccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccC--ccccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFE--QFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN--KPLRRRKLDIH 345 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs--~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng--~~I~Gr~L~V~ 345 (985)
......+.|.++-||..+.+|+++.+|+ .|-++.+|... ...--||+|++..+|++|.+.|.. +.|.|++|...
T Consensus 170 rp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa--~N~nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 170 RPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFA--HNDNWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred ccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeee--ecCceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 3445567788899999999999999997 47788888762 223468999999999999998866 56777777653
No 191
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.37 E-value=2.1 Score=47.91 Aligned_cols=73 Identities=19% Similarity=0.239 Sum_probs=57.6
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCc-eEEEEeccCc
Q 001991 360 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGK-QIKLEASRPG 435 (985)
Q Consensus 360 ~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr-~IkV~~A~~k 435 (985)
..-|-|.++++.-. .-|..+|++||+|.+.. +.....+-+|.|.+.-+|+|||. .||+.|+|. .|-|..+..|
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv-~~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHV-TPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeee-cCCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 45677888888654 45778999999998864 34667799999999999999999 899999875 4557665543
No 192
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=87.07 E-value=1.1 Score=53.36 Aligned_cols=98 Identities=12% Similarity=0.203 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHccCcccccccccccccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhc--cCCEEEEEEcCCCCc
Q 001991 321 DIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGI--YGEIREIRDTQHKHN 398 (985)
Q Consensus 321 d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~--fG~I~~Vri~~~skG 398 (985)
|.+-..+++++.-+..++.+-++|.. ....+.|.++-||..+-.|+++.+|.. +-++.+|.+--+ .
T Consensus 146 DvdLI~Evlresp~VqvDekgekVrp----------~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N--~ 213 (684)
T KOG2591|consen 146 DVDLIVEVLRESPNVQVDEKGEKVRP----------NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN--D 213 (684)
T ss_pred chHHHHHHHhcCCCceeccCcccccc----------CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec--C
Confidence 34445556666666666655555532 234568889999999999999999985 667777765322 2
Q ss_pred EEEEEEcCHHHHHHHHHHhCC--ceeCCceEEEE
Q 001991 399 HKFIEFYDIRAAETALRTLNR--SDVAGKQIKLE 430 (985)
Q Consensus 399 faFVeF~d~edA~kAI~~LNG--~~I~Gr~IkV~ 430 (985)
--||+|++..||+.|.+.|.. ++|.||+|...
T Consensus 214 nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 214 NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 359999999999999998854 46788877654
No 193
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=86.82 E-value=1.3 Score=46.88 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=46.2
Q ss_pred CHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhC--CceeCCceEEEEeccCcc
Q 001991 373 STEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLN--RSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 373 TeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LN--G~~I~Gr~IkV~~A~~k~ 436 (985)
..+.|+++|..|+.+..+...+. =+-..|.|.+.++|.+|...|+ +..+.|+.++|.|++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 35789999999999888766653 3357899999999999999999 999999999999996543
No 194
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=86.38 E-value=0.44 Score=53.88 Aligned_cols=76 Identities=18% Similarity=0.262 Sum_probs=61.1
Q ss_pred CcEEEEecCCCCCCHHHHH---HhhcccCcEEEEEecccc--------ceEEEEEeCCHHHHHHHHHHccCccccccccc
Q 001991 275 SRTLFVRNINSNVEDSELK---ALFEQFGDIRTIYTACKH--------RGFVMISYYDIRAARNAMKALQNKPLRRRKLD 343 (985)
Q Consensus 275 srtLfVgNLP~~vTEedLr---elFs~fG~I~sVkitgks--------rGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~ 343 (985)
..-+||-+|+..+.++.+. +.|.+||.|..|.+.+.. -.-++|+|...++|..||...+|..+.|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3567888999887665554 589999999999763321 12489999999999999999999999999999
Q ss_pred ccccCCC
Q 001991 344 IHYSIPK 350 (985)
Q Consensus 344 V~~a~pk 350 (985)
..+..++
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8887654
No 195
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=86.06 E-value=1.2 Score=46.63 Aligned_cols=68 Identities=7% Similarity=0.062 Sum_probs=46.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcc-cCcE---EEEE--e-----ccccceEEEEEeCCHHHHHHHHHHccCcccccc
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQ-FGDI---RTIY--T-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRR 340 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~-fG~I---~sVk--i-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr 340 (985)
....+|.|++||+++|++++.+.+.. +++. ..+. . ....-.-|||.|.+.+++......++|..+.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 34569999999999999999998887 7766 3332 1 111234699999999999999999999877653
No 196
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=85.76 E-value=0.84 Score=51.61 Aligned_cols=77 Identities=10% Similarity=0.084 Sum_probs=62.9
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccC--CEEEEEEc-----CCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 360 QGTLVVFNLDSSVSTEELHQIFGIYG--EIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 360 ~~tLfV~NLp~svTeedLrelFs~fG--~I~~Vri~-----~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
..++||+||-+.+|++||.+....-| .+.++++. +.+||||+|-..+..+.++.++.|-.++|.|..-.|...
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 34799999999999999999888766 34445443 458999999999999999999999999999988777766
Q ss_pred cCcc
Q 001991 433 RPGG 436 (985)
Q Consensus 433 ~~k~ 436 (985)
....
T Consensus 160 NK~~ 163 (498)
T KOG4849|consen 160 NKTN 163 (498)
T ss_pred chhh
Confidence 5443
No 197
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=85.74 E-value=2.5 Score=37.10 Aligned_cols=55 Identities=22% Similarity=0.250 Sum_probs=43.0
Q ss_pred ccceeeecCCCCCCHHHHHHHhhcc---CCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHh
Q 001991 360 QGTLVVFNLDSSVSTEELHQIFGIY---GEIREIRDTQHKHNHKFIEFYDIRAAETALRTL 417 (985)
Q Consensus 360 ~~tLfV~NLp~svTeedLrelFs~f---G~I~~Vri~~~skGfaFVeF~d~edA~kAI~~L 417 (985)
...|+|++++. ++.++|+.+|..| .....|..+.+ .-|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdD--tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDD--TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecC--CcEEEEECCHHHHHHHHHcC
Confidence 34799999865 8889999999998 12345665544 45889999999999999865
No 198
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=82.51 E-value=4.6 Score=35.49 Aligned_cols=54 Identities=20% Similarity=0.431 Sum_probs=41.2
Q ss_pred CcEEEEecCCCCCCHHHHHHhhccc----CcEEEEEeccccceEEEEEeCCHHHHHHHHHHc
Q 001991 275 SRTLFVRNINSNVEDSELKALFEQF----GDIRTIYTACKHRGFVMISYYDIRAARNAMKAL 332 (985)
Q Consensus 275 srtLfVgNLP~~vTEedLrelFs~f----G~I~sVkitgksrGfAFV~F~d~esA~kAi~~L 332 (985)
..+|+|+++.. ++.++|+.+|..| ++..-=.+. -.-|-|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWId---DtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWID---DTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEec---CCcEEEEECCHHHHHHHHHcC
Confidence 46799999964 9999999999999 543322332 225778999999999999754
No 199
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=82.33 E-value=2.4 Score=47.42 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=52.0
Q ss_pred CcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCccccccc
Q 001991 275 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK 341 (985)
Q Consensus 275 srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~ 341 (985)
..=|-|-++|+ -.-.-|..+|++||+|...... ..-.+-+|.|.+.-+|++||. .+|+.|.|..
T Consensus 197 D~WVTVfGFpp-g~~s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 197 DTWVTVFGFPP-GQVSIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred cceEEEeccCc-cchhHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 45566778887 4556788899999999998874 556699999999999999995 7888887653
No 200
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=81.88 E-value=1 Score=56.11 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=65.1
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCcee--CCceEEEEeccCcc
Q 001991 360 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDV--AGKQIKLEASRPGG 436 (985)
Q Consensus 360 ~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I--~Gr~IkV~~A~~k~ 436 (985)
+.+.++.|.+-..+-.-|..+|.+||.|.+++..++ -..|.|+|...+.|..|+.+|+|+++ -|-+.+|.+|+.-.
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheeccc-ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 345677888888999999999999999999886543 56799999999999999999999976 58889999998643
No 201
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=79.64 E-value=7.9 Score=36.07 Aligned_cols=54 Identities=17% Similarity=0.302 Sum_probs=40.9
Q ss_pred ceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCC
Q 001991 362 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNR 419 (985)
Q Consensus 362 tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG 419 (985)
..+|. .|..+-..||.++|+.||.|.---| ...-|||...+.+.|..|+..+..
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~VsWi---~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI---NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEEEEEE---CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEEEEEE---cCCcEEEEeecHHHHHHHHHHhcc
Confidence 45555 9999999999999999999854333 256899999999999999998863
No 202
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=76.64 E-value=2.5 Score=46.44 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=51.7
Q ss_pred cEEEEecCCCCCCHHHHHHhhcccCcEEEE----EeccccceEEEEEeCCHHHHHHHHHHccC
Q 001991 276 RTLFVRNINSNVEDSELKALFEQFGDIRTI----YTACKHRGFVMISYYDIRAARNAMKALQN 334 (985)
Q Consensus 276 rtLfVgNLP~~vTEedLrelFs~fG~I~sV----kitgksrGfAFV~F~d~esA~kAi~~Lng 334 (985)
..|||.||..-+..+.|.+.|+.||+|... ...++..+-++|.|...-.|.+|++.+..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhcc
Confidence 789999999999999999999999998753 33677888999999999999999987744
No 203
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=75.13 E-value=6.2 Score=35.30 Aligned_cols=59 Identities=22% Similarity=0.327 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHhhccCC-----EEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 370 SSVSTEELHQIFGIYGE-----IREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 370 ~svTeedLrelFs~fG~-----I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
..++..+|..++...+. |-.|++. ..|.||+-. .+.|.++++.|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~-~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVP-EEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE--TT-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEEC-HHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45677888888877654 4556665 458999885 45899999999999999999999875
No 204
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=73.66 E-value=3.4 Score=43.68 Aligned_cols=62 Identities=16% Similarity=0.273 Sum_probs=44.8
Q ss_pred CHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHcc--CcccccccccccccCCC
Q 001991 288 EDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQ--NKPLRRRKLDIHYSIPK 350 (985)
Q Consensus 288 TEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Ln--g~~I~Gr~L~V~~a~pk 350 (985)
..+.|+++|..|+.+..+.. -++-+-..|.|.+.+.|.+|...|+ +..+.|..+++.|+.+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~-L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSP-LKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEE-ETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEE-cCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999998887765 2344457889999999999999999 89999999999988544
No 205
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=72.49 E-value=3.1 Score=50.86 Aligned_cols=71 Identities=20% Similarity=0.188 Sum_probs=63.1
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
.....++||+|+-..+.++-++.+...+|.|.+++... |||..|..+..+..|+..++-..++|..+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34566999999999999999999999999999876543 999999999999999999999999998887755
No 206
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=72.08 E-value=3.1 Score=38.95 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=44.2
Q ss_pred EEEEeCCHHHHHHHHHHccC-cccccccccccccCCCCCCC-----cccccccceeeecCCCCCCHHHHHHHh
Q 001991 315 VMISYYDIRAARNAMKALQN-KPLRRRKLDIHYSIPKDNPS-----EKDANQGTLVVFNLDSSVSTEELHQIF 381 (985)
Q Consensus 315 AFV~F~d~esA~kAi~~Lng-~~I~Gr~L~V~~a~pk~~~~-----~~~~~~~tLfV~NLp~svTeedLrelF 381 (985)
|+|+|.+..-|++.++.-.. ..+.+..+.|....-..... ......++|.|.|||..+++++|++..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 68999999999999863221 23455555554321111111 123567799999999999999998654
No 207
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=71.60 E-value=1.7 Score=51.12 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=62.8
Q ss_pred CCCCcEEEEecCCCCC-CHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001991 272 EHPSRTLFVRNINSNV-EDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 350 (985)
Q Consensus 272 e~~srtLfVgNLP~~v-TEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk 350 (985)
....+.|-+.-+|... +-++|...|.+||+|..|.+.. +---|.|+|.+..+|-+|. ...+..|.++.|+|.|..+.
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~-~~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY-SSLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccC-chhhheeeeeccccccchh-ccccceecCceeEEEEecCC
Confidence 4445666666667665 4588999999999999998833 3567999999999998887 48999999999999998764
Q ss_pred C
Q 001991 351 D 351 (985)
Q Consensus 351 ~ 351 (985)
.
T Consensus 447 ~ 447 (526)
T KOG2135|consen 447 P 447 (526)
T ss_pred c
Confidence 3
No 208
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=71.16 E-value=24 Score=34.46 Aligned_cols=62 Identities=15% Similarity=0.098 Sum_probs=45.5
Q ss_pred ceeeecCCCCCCHHHHHHHhhccC-CEEEEEEcCCCC---cEEEEEEcCHHHHHHHHHHhCCceeC
Q 001991 362 TLVVFNLDSSVSTEELHQIFGIYG-EIREIRDTQHKH---NHKFIEFYDIRAAETALRTLNRSDVA 423 (985)
Q Consensus 362 tLfV~NLp~svTeedLrelFs~fG-~I~~Vri~~~sk---GfaFVeF~d~edA~kAI~~LNG~~I~ 423 (985)
.+.+...|.-++-++|..+.+.+- .|..+++.++.. -.+.++|.+.++|.+-.+.+||+.+.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 344444555556677776666654 466788877643 35999999999999999999999775
No 209
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=68.92 E-value=18 Score=32.17 Aligned_cols=55 Identities=20% Similarity=0.314 Sum_probs=43.4
Q ss_pred CCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEE
Q 001991 371 SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKL 429 (985)
Q Consensus 371 svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV 429 (985)
.++-++++..+..|+-. .|+ .+..| -||-|.+.++|+++....+|+.+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~I~--~d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-RIR--DDRTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc-eEE--ecCCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 56778999999999753 233 23344 489999999999999999999998887765
No 210
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=65.55 E-value=11 Score=37.50 Aligned_cols=102 Identities=18% Similarity=0.145 Sum_probs=70.8
Q ss_pred HHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCcccc--cccceeeec
Q 001991 290 SELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDA--NQGTLVVFN 367 (985)
Q Consensus 290 edLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~~~~~~~--~~~tLfV~N 367 (985)
..|..+....|.+.-..+ ..++..+.|.+.+++.++++ .....+.+..+.++.-.|.....+... ..--|.|.|
T Consensus 36 ~~l~~~W~~~~~~~i~~l---~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~g 111 (153)
T PF14111_consen 36 QELAKIWKLKGGVKIRDL---GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYG 111 (153)
T ss_pred HHHHHHhCCCCcEEEEEe---CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccchhhhhcc
Confidence 344444445555554444 56899999999999999985 444567777777766655444333222 233577889
Q ss_pred CCCC-CCHHHHHHHhhccCCEEEEEEcCC
Q 001991 368 LDSS-VSTEELHQIFGIYGEIREIRDTQH 395 (985)
Q Consensus 368 Lp~s-vTeedLrelFs~fG~I~~Vri~~~ 395 (985)
||.. .+++-|+++-+.+|++.++.....
T Consensus 112 lP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 112 LPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred CCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 9987 578889999999999999876543
No 211
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=61.60 E-value=65 Score=36.54 Aligned_cols=146 Identities=18% Similarity=0.313 Sum_probs=91.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEecc------------ccceEEEEEeCCHHHHHHHHHH----ccC-
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTAC------------KHRGFVMISYYDIRAARNAMKA----LQN- 334 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitg------------ksrGfAFV~F~d~esA~kAi~~----Lng- 334 (985)
+-.+|.|...|+..+++-..+...|-+||+|++|++-. +......+.|-+.+.|-..... |..
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999998711 2346789999998887654432 222
Q ss_pred -cccccccccccccCCCCCC----C--cc----------------cccccceeeecCCCCCCHHH-HHHHh---hccCC-
Q 001991 335 -KPLRRRKLDIHYSIPKDNP----S--EK----------------DANQGTLVVFNLDSSVSTEE-LHQIF---GIYGE- 386 (985)
Q Consensus 335 -~~I~Gr~L~V~~a~pk~~~----~--~~----------------~~~~~tLfV~NLp~svTeed-LrelF---s~fG~- 386 (985)
+.+....|.+.|..-+-.. . +. ....+.|.|. +...+++++ +.+.+ ..-+.
T Consensus 92 K~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~ 170 (309)
T PF10567_consen 92 KTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNK 170 (309)
T ss_pred HHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCCc
Confidence 3456667777655321100 0 00 1123345554 223443333 33222 22232
Q ss_pred ---EEEEEEcCC-------CCcEEEEEEcCHHHHHHHHHHhC
Q 001991 387 ---IREIRDTQH-------KHNHKFIEFYDIRAAETALRTLN 418 (985)
Q Consensus 387 ---I~~Vri~~~-------skGfaFVeF~d~edA~kAI~~LN 418 (985)
|++|.++.. ++.||.+.|-+...|.+.+..+.
T Consensus 171 RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 171 RYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred eEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 455665421 46799999999999999988664
No 212
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=59.59 E-value=24 Score=31.42 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=42.4
Q ss_pred CCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 286 NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 286 ~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
.++-++++..+..|+-..-+. ...| -||.|.+.++|++|....++..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~I~~---d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDRIRD---DRTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcceEEe---cCCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 478899999999998544332 1233 478999999999999999998887766554
No 213
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=56.88 E-value=7.7 Score=47.61 Aligned_cols=72 Identities=19% Similarity=0.179 Sum_probs=63.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
...+.-+|||+||...+..+-++.+...||-|.+++... |+|..|.....+.+|+..++...++|..+.+..
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 345678999999999999999999999999999887533 999999999999999999998889888887754
No 214
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=54.80 E-value=5.7 Score=49.82 Aligned_cols=73 Identities=19% Similarity=0.327 Sum_probs=58.3
Q ss_pred EEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCccc--ccccccccccCCC
Q 001991 277 TLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL--RRRKLDIHYSIPK 350 (985)
Q Consensus 277 tLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I--~Gr~L~V~~a~pk 350 (985)
+.++-|.+-..+-..|..+|.+||.|.+.+. -+.-..|.|+|...+.|..|+++++|+++ -|.+.+|.++++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wt-lr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWT-LRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhhee-cccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3445555566788889999999999999886 34455899999999999999999999875 4677777777644
No 215
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=50.58 E-value=33 Score=40.75 Aligned_cols=64 Identities=17% Similarity=0.273 Sum_probs=54.9
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccC-CEEEEEEcCCCC---cEEEEEEcCHHHHHHHHHHhCCceeC
Q 001991 360 QGTLVVFNLDSSVSTEELHQIFGIYG-EIREIRDTQHKH---NHKFIEFYDIRAAETALRTLNRSDVA 423 (985)
Q Consensus 360 ~~tLfV~NLp~svTeedLrelFs~fG-~I~~Vri~~~sk---GfaFVeF~d~edA~kAI~~LNG~~I~ 423 (985)
...|+|--+|..++-.||..++..+- .|..++++++.. -.+.|+|.+.++|..-.+.+||+.|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 67899999999999999999998764 577788877632 34899999999999999999999875
No 216
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.28 E-value=81 Score=38.70 Aligned_cols=129 Identities=15% Similarity=0.232 Sum_probs=75.2
Q ss_pred CCCCCCcEEEEecCCCC-CCHHHHHHhhccc----CcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 270 YGEHPSRTLFVRNINSN-VEDSELKALFEQF----GDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~-vTEedLrelFs~f----G~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
.....+++|-|-|+.++ +..++|.-+|..| |.|.+|.| ..+ +|- .+.|....+.|.++.+
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~I-YpS------eFG--------keRM~eEeV~GP~~el 233 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKI-YPS------EFG--------KERMKEEEVHGPPKEL 233 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEe-chh------hhh--------HHHhhhhcccCChhhh
Confidence 34667899999999987 8889999988866 58999887 111 111 1123333444443333
Q ss_pred cccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCC
Q 001991 345 HYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAG 424 (985)
Q Consensus 345 ~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~G 424 (985)
- .+........ -+...-++-.++...+|+. ..+ .--||.|+|.+.+.|.+....++|.++..
T Consensus 234 ~--~~~e~~~~s~----------sD~ee~~~~~~~kLR~Yq~-~rL-----kYYyAVvecDsi~tA~~vYe~CDG~EfEs 295 (650)
T KOG2318|consen 234 F--KPVEEYKESE----------SDDEEEEDVDREKLRQYQL-NRL-----KYYYAVVECDSIETAKAVYEECDGIEFES 295 (650)
T ss_pred c--cccccCcccc----------cchhhhhhHHHHHHHHHHh-hhh-----eeEEEEEEecCchHHHHHHHhcCcceecc
Confidence 1 2221111110 1111112223444445531 111 12379999999999999999999999964
Q ss_pred --ceEEEEe
Q 001991 425 --KQIKLEA 431 (985)
Q Consensus 425 --r~IkV~~ 431 (985)
..|-+.|
T Consensus 296 S~~~~DLRF 304 (650)
T KOG2318|consen 296 SANKLDLRF 304 (650)
T ss_pred ccceeeeee
Confidence 4444444
No 217
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=41.92 E-value=54 Score=29.29 Aligned_cols=58 Identities=14% Similarity=0.263 Sum_probs=34.2
Q ss_pred CCCHHHHHHhhcccCc-----EEEEEeccccceEEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001991 286 NVEDSELKALFEQFGD-----IRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 347 (985)
Q Consensus 286 ~vTEedLrelFs~fG~-----I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a 347 (985)
.++..+|..++...+. |-.|++ ...|+||+-.. +.|..+++.|++..+.|+++.|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I---~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDI---FDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEE---eeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4778888888876653 455666 44588888764 4788999999999999999998753
No 218
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=41.05 E-value=29 Score=36.74 Aligned_cols=74 Identities=20% Similarity=0.292 Sum_probs=51.5
Q ss_pred ceeeecCCCCCC-----HHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCc-eEEEEeccCc
Q 001991 362 TLVVFNLDSSVS-----TEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGK-QIKLEASRPG 435 (985)
Q Consensus 362 tLfV~NLp~svT-----eedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr-~IkV~~A~~k 435 (985)
++.+.+++..+- ......+|.+|-+..-.++.+ +.+..-|.|.+++.|..|...+++..|.|+ .++.-++++.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 466667765442 233445566555444333332 345678899999999999999999999998 8888888764
Q ss_pred c
Q 001991 436 G 436 (985)
Q Consensus 436 ~ 436 (985)
-
T Consensus 91 ~ 91 (193)
T KOG4019|consen 91 H 91 (193)
T ss_pred C
Confidence 3
No 219
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=38.37 E-value=68 Score=29.93 Aligned_cols=55 Identities=7% Similarity=0.228 Sum_probs=42.5
Q ss_pred ceeeecCCCCCCHHHHHHHhhc-cC-CEEEEEEcCCCCc--EEEEEEcCHHHHHHHHHH
Q 001991 362 TLVVFNLDSSVSTEELHQIFGI-YG-EIREIRDTQHKHN--HKFIEFYDIRAAETALRT 416 (985)
Q Consensus 362 tLfV~NLp~svTeedLrelFs~-fG-~I~~Vri~~~skG--faFVeF~d~edA~kAI~~ 416 (985)
+-|+.-.+...+..+|++.++. || +|..|.......+ -|||.+..-.+|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 5677778999999999999997 66 5777765443344 599999998888876553
No 220
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=36.71 E-value=78 Score=29.04 Aligned_cols=54 Identities=9% Similarity=0.254 Sum_probs=41.2
Q ss_pred ceeeecCCCCCCHHHHHHHhhc-cC-CEEEEEEcCCCCc--EEEEEEcCHHHHHHHHH
Q 001991 362 TLVVFNLDSSVSTEELHQIFGI-YG-EIREIRDTQHKHN--HKFIEFYDIRAAETALR 415 (985)
Q Consensus 362 tLfV~NLp~svTeedLrelFs~-fG-~I~~Vri~~~skG--faFVeF~d~edA~kAI~ 415 (985)
+-|+...+...+..+|++.++. || +|..|.......+ -|||.+..-+.|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 5678888999999999999987 66 5677765433344 49999988888777654
No 221
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=34.42 E-value=13 Score=41.22 Aligned_cols=63 Identities=27% Similarity=0.504 Sum_probs=42.8
Q ss_pred CcEEEEecCCCC------------CCHHHHHHhhcccCcEEEEEe----------cccc-----ceE---------EEEE
Q 001991 275 SRTLFVRNINSN------------VEDSELKALFEQFGDIRTIYT----------ACKH-----RGF---------VMIS 318 (985)
Q Consensus 275 srtLfVgNLP~~------------vTEedLrelFs~fG~I~sVki----------tgks-----rGf---------AFV~ 318 (985)
..|||+.+||-. -+++-|+..|+.||.|+.|.+ +++. .|| |||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 357888888743 357889999999999998854 3443 334 3456
Q ss_pred eCCHHHHHHHHHHccCccc
Q 001991 319 YYDIRAARNAMKALQNKPL 337 (985)
Q Consensus 319 F~d~esA~kAi~~Lng~~I 337 (985)
|.....-..|+..|.|..+
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 6555566677777777543
No 222
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.06 E-value=88 Score=36.77 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=44.7
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCE-EEEEEcCCCCcEEEEEEcCHHHHHHHHH
Q 001991 360 QGTLVVFNLDSSVSTEELHQIFGIYGEI-REIRDTQHKHNHKFIEFYDIRAAETALR 415 (985)
Q Consensus 360 ~~tLfV~NLp~svTeedLrelFs~fG~I-~~Vri~~~skGfaFVeF~d~edA~kAI~ 415 (985)
...|-|.++|...-.+||...|+.|+.- -.|+++. ...+|--|.+...|..||.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD--dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD--DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEee--cceeEEeecchHHHHHHhh
Confidence 4588899999999999999999999852 3344443 5689999999999999998
No 223
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=21.26 E-value=60 Score=34.46 Aligned_cols=75 Identities=19% Similarity=0.263 Sum_probs=53.0
Q ss_pred CcEEEEecCCCCCCH-----HHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccc-cccccccC
Q 001991 275 SRTLFVRNINSNVED-----SELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRR-KLDIHYSI 348 (985)
Q Consensus 275 srtLfVgNLP~~vTE-----edLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr-~L~V~~a~ 348 (985)
..++.+.+|...+-. ....++|.+|-+....++ -++.+..-|.|.+++.|..|...++...|.|+ .++.-+++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~-lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQL-LRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHH-HHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 356777777766432 234456666665554443 34566788999999999999999999999998 77776665
Q ss_pred CC
Q 001991 349 PK 350 (985)
Q Consensus 349 pk 350 (985)
+.
T Consensus 89 ~~ 90 (193)
T KOG4019|consen 89 PG 90 (193)
T ss_pred CC
Confidence 54
Done!