Query 001991
Match_columns 985
No_of_seqs 753 out of 3274
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 07:46:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001991.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001991hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 1.4E-32 4.8E-37 296.1 17.8 235 147-439 23-268 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 3E-31 1E-35 286.9 17.0 237 144-435 39-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 7.8E-30 2.7E-34 265.3 17.1 166 272-439 12-185 (213)
4 3smz_A Protein raver-1, ribonu 100.0 1.7E-28 5.9E-33 264.2 20.6 195 273-485 20-228 (284)
5 3md3_A Nuclear and cytoplasmic 100.0 2.1E-28 7.2E-33 240.2 18.4 157 276-434 1-166 (166)
6 1b7f_A Protein (SXL-lethal pro 100.0 6.4E-28 2.2E-32 238.0 18.5 155 274-432 2-168 (168)
7 1fxl_A Paraneoplastic encephal 100.0 7.9E-28 2.7E-32 236.3 18.6 155 274-432 1-167 (167)
8 2ghp_A U4/U6 snRNA-associated 100.0 5.9E-28 2E-32 261.0 18.4 203 269-485 35-256 (292)
9 1l3k_A Heterogeneous nuclear r 100.0 1E-27 3.4E-32 242.8 18.0 168 270-439 8-187 (196)
10 2qfj_A FBP-interacting repress 100.0 1.2E-27 4.2E-32 245.8 17.8 165 273-437 26-207 (216)
11 3pgw_A U1-A; protein-RNA compl 100.0 2.5E-27 8.6E-32 254.9 21.0 164 271-434 5-282 (282)
12 2adc_A Polypyrimidine tract-bi 99.9 3.6E-27 1.2E-31 247.9 20.4 164 272-435 31-228 (229)
13 1fje_B Nucleolin RBD12, protei 99.9 9.3E-28 3.2E-32 239.6 12.7 162 271-435 9-174 (175)
14 2g4b_A Splicing factor U2AF 65 99.9 3.8E-27 1.3E-31 233.7 16.7 153 274-432 3-171 (172)
15 1qm9_A Polypyrimidine tract-bi 99.9 2.7E-27 9.1E-32 241.5 15.7 162 274-435 2-197 (198)
16 2cjk_A Nuclear polyadenylated 99.9 1.9E-27 6.4E-32 234.9 13.4 156 274-436 2-167 (167)
17 2yh0_A Splicing factor U2AF 65 99.9 5.2E-27 1.8E-31 237.9 16.4 161 274-436 3-195 (198)
18 3nmr_A Cugbp ELAV-like family 99.9 8.9E-27 3E-31 230.9 17.6 157 274-433 2-175 (175)
19 3tyt_A Heterogeneous nuclear r 99.9 8.6E-27 2.9E-31 242.7 18.0 159 274-432 3-204 (205)
20 3sde_A Paraspeckle component 1 99.9 6.2E-25 2.1E-29 235.5 16.9 156 271-437 18-181 (261)
21 2i2y_A Fusion protein consists 99.8 2.9E-19 9.8E-24 176.0 12.3 127 309-436 10-149 (150)
22 4f02_A Polyadenylate-binding p 99.8 5.5E-20 1.9E-24 191.1 7.2 165 145-351 14-182 (213)
23 1fje_B Nucleolin RBD12, protei 99.8 7.9E-20 2.7E-24 182.1 7.4 162 145-350 12-174 (175)
24 2yh0_A Splicing factor U2AF 65 99.8 1.7E-19 5.8E-24 182.6 9.9 182 147-352 5-196 (198)
25 3md3_A Nuclear and cytoplasmic 99.8 1.9E-19 6.7E-24 176.3 8.7 158 148-348 2-165 (166)
26 1l3k_A Heterogeneous nuclear r 99.8 1.7E-19 5.7E-24 182.4 7.2 170 145-354 12-187 (196)
27 1b7f_A Protein (SXL-lethal pro 99.8 4.2E-19 1.4E-23 174.9 9.2 158 146-347 3-168 (168)
28 2kn4_A Immunoglobulin G-bindin 99.8 4.8E-18 1.6E-22 168.1 14.8 130 308-437 9-152 (158)
29 2qfj_A FBP-interacting repress 99.8 4.1E-19 1.4E-23 182.2 7.1 174 147-353 29-208 (216)
30 2g4b_A Splicing factor U2AF 65 99.8 5.4E-19 1.9E-23 175.0 7.4 158 147-347 5-171 (172)
31 2cjk_A Nuclear polyadenylated 99.7 2.9E-19 9.9E-24 176.1 4.0 157 147-350 4-166 (167)
32 1fxl_A Paraneoplastic encephal 99.7 2.8E-18 9.5E-23 168.2 10.2 157 147-347 3-167 (167)
33 4f25_A Polyadenylate-binding p 99.7 3.7E-18 1.3E-22 161.4 9.7 103 274-376 4-113 (115)
34 3nmr_A Cugbp ELAV-like family 99.7 4E-18 1.4E-22 168.7 8.6 162 146-347 3-174 (175)
35 3pgw_A U1-A; protein-RNA compl 99.7 7.7E-18 2.6E-22 181.0 9.5 77 272-348 204-281 (282)
36 4f25_A Polyadenylate-binding p 99.7 1.2E-17 4E-22 158.0 9.3 104 360-464 5-112 (115)
37 3tyt_A Heterogeneous nuclear r 99.7 1.1E-17 3.6E-22 174.2 8.8 172 147-347 5-204 (205)
38 2adc_A Polypyrimidine tract-bi 99.7 7.2E-17 2.4E-21 169.4 11.7 178 144-350 32-228 (229)
39 1qm9_A Polypyrimidine tract-bi 99.7 1.2E-16 4E-21 162.8 11.0 175 147-350 4-197 (198)
40 3sde_A Paraspeckle component 1 99.7 1.4E-16 4.8E-21 170.5 10.3 153 144-352 20-181 (261)
41 2kn4_A Immunoglobulin G-bindin 99.6 1.5E-15 5.1E-20 150.1 12.7 83 271-353 66-153 (158)
42 3lqv_A PRE-mRNA branch site pr 99.6 6.2E-16 2.1E-20 145.1 6.9 103 272-386 5-109 (115)
43 4fxv_A ELAV-like protein 1; RN 99.6 1.5E-15 5.1E-20 140.3 9.2 76 274-349 18-98 (99)
44 4fxv_A ELAV-like protein 1; RN 99.6 1.7E-15 5.7E-20 140.0 9.4 76 359-434 18-98 (99)
45 2i2y_A Fusion protein consists 99.6 2E-15 6.9E-20 148.5 9.5 138 205-351 11-149 (150)
46 2lea_A Serine/arginine-rich sp 99.6 1.2E-15 4.2E-20 148.6 7.2 121 313-438 5-130 (135)
47 2hvz_A Splicing factor, argini 99.6 5E-15 1.7E-19 135.8 8.4 94 276-369 1-100 (101)
48 3s8s_A Histone-lysine N-methyl 99.6 9.6E-15 3.3E-19 137.6 10.3 82 358-439 4-90 (110)
49 2wbr_A GW182, gawky, LD47780P; 99.5 6.8E-15 2.3E-19 133.8 8.3 76 360-436 7-82 (89)
50 1rk8_A CG8781-PA, CG8781-PA pr 99.5 7.6E-15 2.6E-19 147.1 9.5 123 317-439 11-156 (165)
51 1sjq_A Polypyrimidine tract-bi 99.5 8.4E-15 2.9E-19 137.6 8.4 80 358-438 14-95 (105)
52 3s8s_A Histone-lysine N-methyl 99.5 1.4E-14 4.9E-19 136.4 10.0 79 272-350 3-86 (110)
53 2lxi_A RNA-binding protein 10; 99.5 3.8E-15 1.3E-19 135.3 5.8 79 275-353 1-86 (91)
54 3r27_A HnRNP L, heterogeneous 99.5 1.8E-14 6.3E-19 134.2 10.3 78 358-436 19-98 (100)
55 2hvz_A Splicing factor, argini 99.5 7.7E-15 2.6E-19 134.6 7.2 78 361-438 1-78 (101)
56 1whw_A Hypothetical protein ri 99.5 3E-14 1E-18 130.0 10.8 82 272-353 5-91 (99)
57 2cqi_A Nucleolysin TIAR; RNA r 99.5 3.8E-14 1.3E-18 130.4 11.6 83 356-438 11-96 (103)
58 2d9p_A Polyadenylate-binding p 99.5 5.1E-14 1.7E-18 129.5 12.3 85 270-354 10-97 (103)
59 2do4_A Squamous cell carcinoma 99.5 4.1E-14 1.4E-18 129.5 11.5 83 270-352 12-98 (100)
60 2lxi_A RNA-binding protein 10; 99.5 6.1E-15 2.1E-19 133.9 5.8 76 361-436 2-84 (91)
61 2cph_A RNA binding motif prote 99.5 4.5E-14 1.6E-18 130.4 11.7 83 356-438 11-100 (107)
62 2do4_A Squamous cell carcinoma 99.5 4.5E-14 1.5E-18 129.2 11.6 82 356-437 13-98 (100)
63 1whw_A Hypothetical protein ri 99.5 4.4E-14 1.5E-18 128.9 11.3 81 358-438 6-91 (99)
64 3r27_A HnRNP L, heterogeneous 99.5 1.9E-14 6.5E-19 134.1 9.0 80 271-351 17-98 (100)
65 1sjq_A Polypyrimidine tract-bi 99.5 2.4E-14 8.2E-19 134.5 9.7 83 271-354 12-96 (105)
66 2cq0_A Eukaryotic translation 99.5 4.6E-14 1.6E-18 129.8 11.3 84 270-353 10-98 (103)
67 2cq1_A PTB-like protein L; RRM 99.5 5.1E-14 1.7E-18 131.1 11.7 81 357-438 12-94 (101)
68 3bs9_A Nucleolysin TIA-1 isofo 99.5 3.2E-14 1.1E-18 126.4 9.9 77 359-435 5-86 (87)
69 1x5u_A Splicing factor 3B subu 99.5 4.8E-14 1.7E-18 130.0 11.4 84 270-353 10-98 (105)
70 3md1_A Nuclear and cytoplasmic 99.5 3.1E-14 1.1E-18 125.4 9.6 77 275-351 1-82 (83)
71 2dnh_A Bruno-like 5, RNA bindi 99.5 7E-14 2.4E-18 128.9 12.4 83 271-353 11-100 (105)
72 4a8x_A RNA-binding protein wit 99.5 3E-14 1E-18 126.7 9.5 79 359-437 3-87 (88)
73 2dgo_A Cytotoxic granule-assoc 99.5 6.6E-14 2.3E-18 131.3 12.4 84 270-353 10-98 (115)
74 2d9p_A Polyadenylate-binding p 99.5 3.1E-14 1E-18 131.0 9.8 84 356-439 11-97 (103)
75 3mdf_A Peptidyl-prolyl CIS-tra 99.5 3.5E-14 1.2E-18 125.6 9.8 76 358-433 5-85 (85)
76 2dgv_A HnRNP M, heterogeneous 99.5 5.1E-14 1.7E-18 126.6 11.0 82 272-353 5-89 (92)
77 3md1_A Nuclear and cytoplasmic 99.5 4.2E-14 1.4E-18 124.5 10.1 76 361-436 2-82 (83)
78 1x4a_A Splicing factor, argini 99.5 5.8E-14 2E-18 130.6 11.6 84 270-353 17-102 (109)
79 1x4a_A Splicing factor, argini 99.5 6.2E-14 2.1E-18 130.4 11.8 80 357-436 19-100 (109)
80 1why_A Hypothetical protein ri 99.5 5.6E-14 1.9E-18 128.1 11.2 78 358-436 15-94 (97)
81 2dnz_A Probable RNA-binding pr 99.5 5.3E-14 1.8E-18 127.2 10.9 81 273-353 3-88 (95)
82 2cq3_A RNA-binding protein 9; 99.5 7.3E-14 2.5E-18 128.5 12.0 83 356-438 11-96 (103)
83 2dgs_A DAZ-associated protein 99.5 6.9E-14 2.4E-18 127.7 11.7 82 271-353 6-92 (99)
84 3bs9_A Nucleolysin TIA-1 isofo 99.5 2.9E-14 1E-18 126.7 8.9 78 273-350 4-86 (87)
85 2dgx_A KIAA0430 protein; RRM d 99.5 5.2E-14 1.8E-18 128.5 10.7 79 358-436 7-91 (96)
86 3pgw_S U1-70K; protein-RNA com 99.5 1.1E-14 3.8E-19 167.9 7.7 146 291-436 8-183 (437)
87 2dnm_A SRP46 splicing factor; 99.5 3.9E-14 1.3E-18 130.3 9.9 84 270-353 8-96 (103)
88 1oo0_B CG8781-PA, drosophila Y 99.5 5.4E-14 1.9E-18 130.9 10.8 82 357-438 23-109 (110)
89 1wex_A Hypothetical protein (r 99.5 4.2E-14 1.5E-18 132.2 10.1 79 358-437 13-93 (104)
90 2cqb_A Peptidyl-prolyl CIS-tra 99.5 3.6E-14 1.2E-18 130.1 9.4 82 357-438 9-95 (102)
91 2x1f_A MRNA 3'-END-processing 99.5 6.8E-14 2.3E-18 127.2 11.1 79 360-438 2-85 (96)
92 2dgo_A Cytotoxic granule-assoc 99.5 6.8E-14 2.3E-18 131.2 11.4 82 357-438 12-98 (115)
93 2cph_A RNA binding motif prote 99.5 7.4E-14 2.5E-18 129.0 11.4 84 270-353 10-100 (107)
94 1wex_A Hypothetical protein (r 99.5 5.8E-14 2E-18 131.3 10.8 84 269-353 9-94 (104)
95 2x1f_A MRNA 3'-END-processing 99.5 3.8E-14 1.3E-18 129.0 9.2 79 274-352 1-84 (96)
96 2dgs_A DAZ-associated protein 99.5 6.6E-14 2.3E-18 127.9 10.9 81 357-438 7-92 (99)
97 2cpz_A CUG triplet repeat RNA- 99.5 6E-14 2E-18 131.8 10.8 84 270-353 20-108 (115)
98 2cq3_A RNA-binding protein 9; 99.5 1.1E-13 3.8E-18 127.3 12.3 84 270-353 10-96 (103)
99 1p27_B RNA-binding protein 8A; 99.5 4.7E-14 1.6E-18 130.3 9.9 81 271-351 19-104 (106)
100 2dnq_A RNA-binding protein 4B; 99.5 5.6E-14 1.9E-18 126.3 10.1 78 358-438 6-83 (90)
101 2ad9_A Polypyrimidine tract-bi 99.5 5.3E-14 1.8E-18 135.0 10.5 85 269-354 25-111 (119)
102 2cqc_A Arginine/serine-rich sp 99.5 8.3E-14 2.8E-18 125.7 11.2 78 357-434 12-94 (95)
103 2ad9_A Polypyrimidine tract-bi 99.5 2.9E-14 9.9E-19 136.8 8.6 80 358-438 29-110 (119)
104 1x4d_A Matrin 3; structural ge 99.5 3.2E-14 1.1E-18 132.9 8.6 78 358-436 13-93 (102)
105 2dnz_A Probable RNA-binding pr 99.5 7E-14 2.4E-18 126.4 10.5 80 359-438 4-88 (95)
106 1x5u_A Splicing factor 3B subu 99.5 6.3E-14 2.2E-18 129.2 10.4 82 357-438 12-98 (105)
107 1x4h_A RNA-binding protein 28; 99.5 8E-14 2.7E-18 129.6 11.2 85 269-353 9-104 (111)
108 2jrs_A RNA-binding protein 39; 99.5 7.5E-14 2.6E-18 130.7 10.9 82 270-351 21-107 (108)
109 1p27_B RNA-binding protein 8A; 99.5 4.8E-14 1.6E-18 130.2 9.4 80 357-436 20-104 (106)
110 1x4c_A Splicing factor, argini 99.5 7.5E-14 2.5E-18 130.1 10.8 78 358-437 13-95 (108)
111 1x4h_A RNA-binding protein 28; 99.5 1.1E-13 3.6E-18 128.8 11.8 82 357-438 12-104 (111)
112 2cqi_A Nucleolysin TIAR; RNA r 99.5 8.8E-14 3E-18 127.9 11.1 84 270-353 10-96 (103)
113 2cpf_A RNA binding motif prote 99.5 7.2E-14 2.4E-18 127.2 10.2 81 273-353 3-91 (98)
114 3mdf_A Peptidyl-prolyl CIS-tra 99.5 5.5E-14 1.9E-18 124.4 9.2 77 272-348 4-85 (85)
115 2cpz_A CUG triplet repeat RNA- 99.5 4.9E-14 1.7E-18 132.3 9.4 82 357-438 22-108 (115)
116 2cq0_A Eukaryotic translation 99.5 5.8E-14 2E-18 129.2 9.7 82 357-438 12-98 (103)
117 1x5s_A Cold-inducible RNA-bind 99.5 4.4E-14 1.5E-18 129.6 8.8 81 358-438 10-95 (102)
118 2dnh_A Bruno-like 5, RNA bindi 99.5 8.6E-14 2.9E-18 128.3 10.8 83 357-439 12-101 (105)
119 1x4g_A Nucleolysin TIAR; struc 99.5 7.2E-14 2.5E-18 130.2 10.3 80 358-438 23-102 (109)
120 2e5h_A Zinc finger CCHC-type a 99.5 1.4E-13 4.6E-18 124.3 11.7 77 357-433 13-94 (94)
121 1wf1_A RNA-binding protein RAL 99.5 4.9E-14 1.7E-18 131.5 9.0 95 338-436 6-101 (110)
122 1x4d_A Matrin 3; structural ge 99.5 6.2E-14 2.1E-18 130.9 9.5 80 272-352 12-94 (102)
123 2cpf_A RNA binding motif prote 99.5 5.2E-14 1.8E-18 128.2 8.8 79 359-437 4-90 (98)
124 2cq1_A PTB-like protein L; RRM 99.5 1.2E-13 3.9E-18 128.7 11.3 83 270-353 10-94 (101)
125 2cqc_A Arginine/serine-rich sp 99.5 7.2E-14 2.4E-18 126.2 9.6 80 270-349 10-94 (95)
126 1why_A Hypothetical protein ri 99.5 1.4E-13 4.9E-18 125.3 11.5 81 271-352 13-95 (97)
127 1x5t_A Splicing factor 3B subu 99.5 4.4E-14 1.5E-18 128.0 8.0 81 273-353 3-89 (96)
128 1x5s_A Cold-inducible RNA-bind 99.5 7E-14 2.4E-18 128.2 9.4 83 271-353 8-95 (102)
129 1x5t_A Splicing factor 3B subu 99.5 4.4E-14 1.5E-18 128.0 7.9 80 359-438 4-89 (96)
130 2e5h_A Zinc finger CCHC-type a 99.5 9.3E-14 3.2E-18 125.4 9.9 78 271-348 12-94 (94)
131 2dhg_A TRNA selenocysteine ass 99.5 1.3E-13 4.5E-18 126.8 11.1 83 271-353 5-93 (104)
132 2dgu_A Heterogeneous nuclear r 99.5 1.1E-13 3.7E-18 127.7 10.5 79 358-439 9-87 (103)
133 2lkz_A RNA-binding protein 5; 99.5 3E-14 1E-18 131.1 6.7 76 359-434 8-94 (95)
134 2cqb_A Peptidyl-prolyl CIS-tra 99.5 6.3E-14 2.2E-18 128.5 8.8 83 271-353 8-95 (102)
135 2dnm_A SRP46 splicing factor; 99.5 7.5E-14 2.6E-18 128.4 9.3 81 357-437 10-95 (103)
136 2jvo_A Nucleolar protein 3; nu 99.5 6.9E-14 2.3E-18 131.0 9.1 81 355-438 26-106 (108)
137 2ytc_A PRE-mRNA-splicing facto 99.5 1E-13 3.6E-18 122.7 9.8 76 357-433 9-85 (85)
138 3p5t_L Cleavage and polyadenyl 99.5 2.8E-14 9.6E-19 128.6 6.2 78 276-353 2-86 (90)
139 2ywk_A Putative RNA-binding pr 99.5 1E-13 3.4E-18 125.4 9.8 78 357-434 13-94 (95)
140 2cpj_A Non-POU domain-containi 99.5 9.2E-14 3.1E-18 127.1 9.6 81 271-352 11-91 (99)
141 2dgt_A RNA-binding protein 30; 99.5 1.4E-13 4.9E-18 124.1 10.7 78 357-437 7-84 (92)
142 2dgp_A Bruno-like 4, RNA bindi 99.5 9.2E-14 3.1E-18 128.3 9.6 84 270-353 8-99 (106)
143 2cpi_A CCR4-NOT transcription 99.5 9.7E-14 3.3E-18 130.1 9.9 80 357-436 12-102 (111)
144 2cpj_A Non-POU domain-containi 99.5 9E-14 3.1E-18 127.2 9.4 79 357-436 12-90 (99)
145 2dnp_A RNA-binding protein 14; 99.5 1.3E-13 4.6E-18 123.8 10.3 78 357-437 6-83 (90)
146 2jvr_A Nucleolar protein 3; RN 99.5 7E-14 2.4E-18 132.4 8.9 78 359-436 27-106 (111)
147 2dnq_A RNA-binding protein 4B; 99.5 1.4E-13 4.8E-18 123.7 10.4 79 272-353 5-83 (90)
148 2dgp_A Bruno-like 4, RNA bindi 99.5 1.1E-13 3.6E-18 127.9 9.8 83 356-438 9-99 (106)
149 2ywk_A Putative RNA-binding pr 99.5 8E-14 2.8E-18 126.0 8.7 79 270-348 11-93 (95)
150 2kxn_B Transformer-2 protein h 99.5 1.1E-13 3.9E-18 133.7 10.3 82 270-351 41-127 (129)
151 1u6f_A Tcubp1, RNA-binding pro 99.5 1.5E-13 5.2E-18 133.1 11.2 83 356-438 38-125 (139)
152 2err_A Ataxin-2-binding protei 99.5 8.3E-14 2.9E-18 130.3 9.0 81 355-435 24-107 (109)
153 2cpd_A Apobec-1 stimulating pr 99.5 2.6E-13 8.9E-18 124.1 12.1 78 357-437 12-91 (99)
154 2cq4_A RNA binding motif prote 99.5 5.7E-14 2E-18 131.7 7.7 80 358-438 23-107 (114)
155 1fjc_A Nucleolin RBD2, protein 99.5 7.3E-14 2.5E-18 126.7 8.2 82 271-352 12-93 (96)
156 1oo0_B CG8781-PA, drosophila Y 99.5 9.5E-14 3.3E-18 129.2 9.1 83 270-352 21-108 (110)
157 2la4_A Nuclear and cytoplasmic 99.5 6.7E-14 2.3E-18 128.3 7.9 76 359-435 26-101 (101)
158 2dgv_A HnRNP M, heterogeneous 99.5 8.1E-14 2.8E-18 125.3 8.3 80 358-437 6-88 (92)
159 1wi8_A EIF-4B, eukaryotic tran 99.5 1.8E-13 6E-18 126.3 10.7 83 269-353 9-97 (104)
160 4a8x_A RNA-binding protein wit 99.5 1E-13 3.4E-18 123.3 8.7 78 274-351 3-86 (88)
161 2lkz_A RNA-binding protein 5; 99.5 4.5E-14 1.5E-18 130.0 6.6 79 271-349 5-94 (95)
162 2ytc_A PRE-mRNA-splicing facto 99.5 1.2E-13 4.2E-18 122.3 9.2 78 270-348 7-85 (85)
163 2dgt_A RNA-binding protein 30; 99.5 1.3E-13 4.6E-18 124.3 9.6 81 270-353 5-85 (92)
164 1p1t_A Cleavage stimulation fa 99.5 4.9E-14 1.7E-18 129.5 6.8 83 357-439 5-92 (104)
165 2xnq_A Nuclear polyadenylated 99.5 2.4E-13 8.1E-18 124.7 11.3 77 357-436 19-96 (97)
166 1wi8_A EIF-4B, eukaryotic tran 99.5 1.3E-13 4.5E-18 127.2 9.6 80 357-438 12-97 (104)
167 2do0_A HnRNP M, heterogeneous 99.5 3E-13 1E-17 126.5 12.1 82 271-352 11-96 (114)
168 1whx_A Hypothetical protein ri 99.5 1.1E-13 3.6E-18 130.2 9.1 78 358-436 8-85 (111)
169 2fy1_A RNA-binding motif prote 99.5 1.7E-13 5.7E-18 129.9 10.5 82 272-353 4-89 (116)
170 2div_A TRNA selenocysteine ass 99.5 1.2E-13 4.2E-18 125.9 9.2 80 272-351 6-95 (99)
171 2dng_A Eukaryotic translation 99.5 2.3E-13 8E-18 125.3 11.1 82 270-353 10-96 (103)
172 1nu4_A U1A RNA binding domain; 99.5 8.8E-14 3E-18 126.2 8.1 82 271-352 4-91 (97)
173 2dh8_A DAZ-associated protein 99.5 1.3E-13 4.4E-18 127.3 9.3 84 270-354 11-99 (105)
174 2la6_A RNA-binding protein FUS 99.5 1.6E-13 5.6E-18 125.4 9.9 79 270-348 8-99 (99)
175 2khc_A Testis-specific RNP-typ 99.5 1.6E-13 5.4E-18 129.3 10.0 77 357-433 37-118 (118)
176 1x4e_A RNA binding motif, sing 99.5 1.3E-13 4.3E-18 122.4 8.8 76 273-348 3-83 (85)
177 2la4_A Nuclear and cytoplasmic 99.5 1E-13 3.6E-18 127.0 8.5 77 273-350 25-101 (101)
178 2kxn_B Transformer-2 protein h 99.5 1.6E-13 5.5E-18 132.7 10.2 80 357-436 43-127 (129)
179 2a3j_A U1 small nuclear ribonu 99.5 1.5E-13 5E-18 133.2 9.9 82 271-352 25-112 (127)
180 1x4f_A Matrin 3; structural ge 99.5 1.1E-13 3.7E-18 131.5 8.7 81 272-353 22-105 (112)
181 2lea_A Serine/arginine-rich sp 99.5 6.4E-14 2.2E-18 136.4 7.3 85 269-353 41-130 (135)
182 2cqd_A RNA-binding region cont 99.5 2.4E-13 8.2E-18 127.8 11.0 83 270-353 12-99 (116)
183 2jrs_A RNA-binding protein 39; 99.5 1.7E-13 5.9E-18 128.2 9.9 81 356-436 22-107 (108)
184 2e5j_A Methenyltetrahydrofolat 99.5 1.5E-13 5E-18 125.5 9.1 79 357-436 16-95 (97)
185 3ex7_B RNA-binding protein 8A; 99.5 1.3E-13 4.5E-18 131.3 9.2 82 357-438 19-105 (126)
186 2cpe_A RNA-binding protein EWS 99.5 1.4E-13 4.8E-18 128.7 9.2 84 270-353 10-106 (113)
187 3ns6_A Eukaryotic translation 99.4 4.9E-14 1.7E-18 129.9 5.9 78 359-436 5-94 (100)
188 1p1t_A Cleavage stimulation fa 99.4 5.9E-14 2E-18 129.0 6.4 81 272-352 5-90 (104)
189 2wbr_A GW182, gawky, LD47780P; 99.4 8.1E-14 2.8E-18 126.8 7.2 73 274-347 6-78 (89)
190 1u6f_A Tcubp1, RNA-binding pro 99.4 2.1E-13 7.1E-18 132.1 10.5 84 270-353 37-125 (139)
191 2dhg_A TRNA selenocysteine ass 99.4 9.3E-14 3.2E-18 127.8 7.6 82 358-439 7-94 (104)
192 2khc_A Testis-specific RNP-typ 99.4 1.7E-13 5.7E-18 129.1 9.5 79 270-348 35-118 (118)
193 2fc9_A NCL protein; structure 99.4 1.9E-13 6.3E-18 125.3 9.5 83 271-353 11-94 (101)
194 3ns6_A Eukaryotic translation 99.4 5.9E-14 2E-18 129.3 6.2 78 273-350 4-93 (100)
195 2err_A Ataxin-2-binding protei 99.4 1.1E-13 3.7E-18 129.5 8.0 82 269-350 23-107 (109)
196 1fjc_A Nucleolin RBD2, protein 99.4 1.1E-13 3.7E-18 125.6 7.7 81 357-437 13-93 (96)
197 2e5j_A Methenyltetrahydrofolat 99.4 2E-13 6.9E-18 124.5 9.5 81 271-351 15-95 (97)
198 3ucg_A Polyadenylate-binding p 99.4 1.9E-13 6.3E-18 122.0 9.1 76 359-435 5-85 (89)
199 2cpi_A CCR4-NOT transcription 99.4 1.9E-13 6.4E-18 128.2 9.5 81 271-351 11-102 (111)
200 3ex7_B RNA-binding protein 8A; 99.4 1.8E-13 6.3E-18 130.3 9.4 84 270-353 17-105 (126)
201 2cqd_A RNA-binding region cont 99.4 2.3E-13 8E-18 127.9 9.9 80 356-436 13-97 (116)
202 2dgu_A Heterogeneous nuclear r 99.4 2.6E-13 8.8E-18 125.2 9.9 80 271-353 7-86 (103)
203 2do0_A HnRNP M, heterogeneous 99.4 2.7E-13 9.2E-18 126.8 10.1 79 358-436 13-95 (114)
204 3ulh_A THO complex subunit 4; 99.4 2.3E-13 7.7E-18 125.9 9.5 79 270-348 24-106 (107)
205 1nu4_A U1A RNA binding domain; 99.4 2E-13 6.8E-18 123.9 8.9 81 358-438 6-92 (97)
206 2a3j_A U1 small nuclear ribonu 99.4 2.5E-13 8.6E-18 131.5 10.1 82 358-439 27-114 (127)
207 2cpe_A RNA-binding protein EWS 99.4 2.1E-13 7.1E-18 127.5 9.1 82 357-438 12-106 (113)
208 2fy1_A RNA-binding motif prote 99.4 1.8E-13 6.1E-18 129.7 8.8 79 358-436 5-87 (116)
209 3p5t_L Cleavage and polyadenyl 99.4 4.4E-14 1.5E-18 127.3 4.4 77 361-437 2-85 (90)
210 2cpd_A Apobec-1 stimulating pr 99.4 4.8E-13 1.6E-17 122.3 11.3 80 271-353 11-92 (99)
211 2la6_A RNA-binding protein FUS 99.4 2.4E-13 8.3E-18 124.3 9.4 77 357-433 10-99 (99)
212 2dnp_A RNA-binding protein 14; 99.4 2.8E-13 9.5E-18 121.8 9.5 80 271-353 5-84 (90)
213 2dng_A Eukaryotic translation 99.4 3.3E-13 1.1E-17 124.3 10.1 80 357-438 12-96 (103)
214 2cpx_A Hypothetical protein FL 99.4 2.8E-13 9.7E-18 126.8 9.8 83 271-353 21-108 (115)
215 2m2b_A RNA-binding protein 10; 99.4 1.8E-13 6E-18 132.0 8.6 84 269-353 17-111 (131)
216 1x5o_A RNA binding motif, sing 99.4 5.8E-13 2E-17 124.7 11.9 80 271-350 21-112 (114)
217 2kvi_A Nuclear polyadenylated 99.4 1.7E-13 5.8E-18 124.9 8.0 77 358-437 8-85 (96)
218 2fc8_A NCL protein; structure 99.4 3.7E-13 1.3E-17 123.4 10.3 83 271-353 11-95 (102)
219 2nlw_A Eukaryotic translation 99.4 2.5E-13 8.6E-18 126.1 9.3 80 271-350 11-100 (105)
220 2kvi_A Nuclear polyadenylated 99.4 2E-13 6.9E-18 124.4 8.4 80 271-353 6-86 (96)
221 1x4c_A Splicing factor, argini 99.4 4.9E-13 1.7E-17 124.6 11.1 81 271-353 11-96 (108)
222 2j76_E EIF-4B, EIF4B, eukaryot 99.4 2E-13 6.7E-18 125.6 8.3 79 271-351 15-99 (100)
223 2jwn_A Embryonic polyadenylate 99.4 5.3E-14 1.8E-18 133.7 4.6 78 358-436 34-116 (124)
224 2dgx_A KIAA0430 protein; RRM d 99.4 2.8E-13 9.4E-18 123.7 9.2 81 273-353 7-93 (96)
225 3zzy_A Polypyrimidine tract-bi 99.4 3.1E-13 1.1E-17 131.6 10.0 76 361-436 29-107 (130)
226 2cqh_A IGF-II mRNA-binding pro 99.4 1.3E-13 4.5E-18 124.5 6.9 79 358-438 6-86 (93)
227 1x5p_A Negative elongation fac 99.4 6.7E-13 2.3E-17 121.0 11.6 77 358-437 13-89 (97)
228 2krb_A Eukaryotic translation 99.4 2E-13 7E-18 120.4 7.9 70 275-344 1-80 (81)
229 2kt5_A RNA and export factor-b 99.4 6.9E-13 2.3E-17 126.3 12.0 80 357-436 32-115 (124)
230 3ucg_A Polyadenylate-binding p 99.4 2.5E-13 8.4E-18 121.2 8.4 76 274-350 5-85 (89)
231 1x4g_A Nucleolysin TIAR; struc 99.4 3.5E-13 1.2E-17 125.5 9.6 82 271-353 21-102 (109)
232 1h2v_Z 20 kDa nuclear CAP bind 99.4 4.3E-13 1.5E-17 132.7 10.8 81 358-438 37-122 (156)
233 2xnq_A Nuclear polyadenylated 99.4 3.8E-13 1.3E-17 123.3 9.7 77 271-350 18-95 (97)
234 3ulh_A THO complex subunit 4; 99.4 3.9E-13 1.3E-17 124.3 9.8 76 358-433 27-106 (107)
235 2jvo_A Nucleolar protein 3; nu 99.4 2.3E-13 7.9E-18 127.4 8.4 81 269-352 25-105 (108)
236 1whx_A Hypothetical protein ri 99.4 1.5E-13 5.2E-18 129.2 7.1 77 273-350 8-84 (111)
237 2cqh_A IGF-II mRNA-binding pro 99.4 1.6E-13 5.6E-18 123.8 6.9 80 272-353 5-86 (93)
238 3s7r_A Heterogeneous nuclear r 99.4 3.2E-13 1.1E-17 120.2 8.8 76 271-347 7-87 (87)
239 3lqv_A PRE-mRNA branch site pr 99.4 3.3E-13 1.1E-17 126.5 9.2 80 359-438 7-88 (115)
240 2cqp_A RNA-binding protein 12; 99.4 2.2E-13 7.6E-18 124.0 7.8 80 271-350 11-95 (98)
241 2nlw_A Eukaryotic translation 99.4 4.1E-13 1.4E-17 124.7 9.6 79 357-435 12-100 (105)
242 2dis_A Unnamed protein product 99.4 3.6E-13 1.2E-17 125.0 9.2 80 358-437 6-94 (109)
243 1x4f_A Matrin 3; structural ge 99.4 1.3E-13 4.4E-18 131.0 6.2 79 358-437 23-104 (112)
244 2dis_A Unnamed protein product 99.4 4.2E-13 1.5E-17 124.4 9.6 81 273-353 6-95 (109)
245 1x4b_A Heterogeneous nuclear r 99.4 2.2E-13 7.4E-18 128.1 7.6 81 357-438 24-109 (116)
246 1h2v_Z 20 kDa nuclear CAP bind 99.4 5.1E-13 1.8E-17 132.1 10.6 82 271-352 35-121 (156)
247 2fc9_A NCL protein; structure 99.4 2.9E-13 1E-17 124.0 8.2 82 356-437 11-93 (101)
248 2ek1_A RNA-binding protein 12; 99.4 1.5E-13 5E-18 124.3 6.1 77 272-348 12-93 (95)
249 2cqg_A TDP-43, TAR DNA-binding 99.4 9.6E-13 3.3E-17 121.0 11.6 82 270-353 10-96 (103)
250 1s79_A Lupus LA protein; RRM, 99.4 3.7E-13 1.3E-17 125.4 8.8 78 357-435 8-89 (103)
251 2j76_E EIF-4B, EIF4B, eukaryot 99.4 1.6E-13 5.5E-18 126.1 6.3 78 357-436 16-99 (100)
252 2e44_A Insulin-like growth fac 99.4 8.2E-13 2.8E-17 119.8 10.9 79 358-436 13-93 (96)
253 2dgw_A Probable RNA-binding pr 99.4 5.4E-13 1.8E-17 119.9 9.5 79 271-351 6-88 (91)
254 2jvr_A Nucleolar protein 3; RN 99.4 2.1E-13 7.1E-18 129.2 7.1 79 272-350 25-105 (111)
255 2fc8_A NCL protein; structure 99.4 5.6E-13 1.9E-17 122.2 9.7 84 355-438 10-95 (102)
256 2ki2_A SS-DNA binding protein 99.4 1.3E-13 4.4E-18 123.6 5.2 77 276-353 2-83 (90)
257 1x5p_A Negative elongation fac 99.4 9.6E-13 3.3E-17 120.0 11.2 80 271-353 11-90 (97)
258 2div_A TRNA selenocysteine ass 99.4 2.4E-13 8.3E-18 124.0 7.2 79 358-436 7-95 (99)
259 3n9u_C Cleavage and polyadenyl 99.4 3.4E-13 1.2E-17 134.8 8.8 81 359-439 54-141 (156)
260 3d2w_A TAR DNA-binding protein 99.4 7.2E-13 2.4E-17 119.9 10.0 77 357-437 8-86 (89)
261 1wf1_A RNA-binding protein RAL 99.4 5.5E-13 1.9E-17 124.4 9.6 78 271-351 23-101 (110)
262 1s79_A Lupus LA protein; RRM, 99.4 3.3E-13 1.1E-17 125.7 7.9 77 271-348 7-87 (103)
263 2kt5_A RNA and export factor-b 99.4 6.1E-13 2.1E-17 126.6 9.9 83 271-353 31-117 (124)
264 2rs2_A Musashi-1, RNA-binding 99.4 5.8E-13 2E-17 124.7 9.6 82 356-438 21-107 (109)
265 2cqp_A RNA-binding protein 12; 99.4 2.4E-13 8.1E-18 123.8 6.6 78 358-435 13-95 (98)
266 2cpx_A Hypothetical protein FL 99.4 3.9E-13 1.3E-17 125.9 8.3 82 357-438 22-108 (115)
267 3s7r_A Heterogeneous nuclear r 99.4 7E-13 2.4E-17 118.1 9.5 75 357-432 8-87 (87)
268 3n9u_C Cleavage and polyadenyl 99.4 2.9E-13 9.9E-18 135.3 7.7 78 273-350 53-137 (156)
269 2dh8_A DAZ-associated protein 99.4 4.8E-13 1.7E-17 123.4 8.6 81 357-438 13-98 (105)
270 2rs2_A Musashi-1, RNA-binding 99.4 4.3E-13 1.5E-17 125.6 8.4 82 271-353 21-107 (109)
271 1wg1_A KIAA1579 protein, homol 99.4 3.9E-13 1.3E-17 120.6 7.7 75 359-435 4-78 (88)
272 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 1.1E-12 3.7E-17 126.5 11.4 76 357-432 60-140 (140)
273 2mss_A Protein (musashi1); RNA 99.4 2.9E-13 9.8E-18 117.3 6.3 70 277-347 1-75 (75)
274 1wg5_A Heterogeneous nuclear r 99.4 1E-12 3.5E-17 121.8 10.4 80 271-351 11-95 (104)
275 1x4e_A RNA binding motif, sing 99.4 1.5E-13 5.2E-18 121.9 4.5 76 359-434 4-84 (85)
276 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 1E-12 3.5E-17 126.6 10.8 78 270-347 58-140 (140)
277 1x5o_A RNA binding motif, sing 99.4 9.5E-13 3.2E-17 123.2 9.9 79 357-435 22-112 (114)
278 2ek1_A RNA-binding protein 12; 99.4 2.3E-13 7.7E-18 123.0 5.4 76 359-434 14-94 (95)
279 1sjr_A Polypyrimidine tract-bi 99.4 6.6E-13 2.3E-17 134.0 9.3 77 360-436 46-125 (164)
280 2mss_A Protein (musashi1); RNA 99.4 3.4E-13 1.2E-17 116.8 6.2 70 362-432 1-75 (75)
281 3beg_B Splicing factor, argini 99.4 6.8E-13 2.3E-17 125.4 8.6 76 359-436 15-95 (115)
282 2e5i_A Heterogeneous nuclear r 99.4 1.1E-12 3.7E-17 126.7 10.2 74 362-436 27-103 (124)
283 2cq2_A Hypothetical protein LO 99.4 7.2E-13 2.5E-17 126.2 8.5 77 358-435 23-106 (114)
284 2ki2_A SS-DNA binding protein 99.4 1.8E-13 6.3E-18 122.6 4.2 75 361-436 2-81 (90)
285 1fj7_A Nucleolin RBD1, protein 99.4 2.7E-13 9.4E-18 124.2 5.4 82 271-353 13-98 (101)
286 1x4b_A Heterogeneous nuclear r 99.4 6.9E-13 2.4E-17 124.7 7.9 81 272-353 24-109 (116)
287 2krb_A Eukaryotic translation 99.4 4.7E-13 1.6E-17 118.1 6.4 69 361-429 2-80 (81)
288 2m2b_A RNA-binding protein 10; 99.4 3E-13 1E-17 130.5 5.5 80 356-436 19-109 (131)
289 1uaw_A Mouse-musashi-1; RNP-ty 99.4 3.2E-13 1.1E-17 117.2 5.2 71 276-347 1-76 (77)
290 2cq4_A RNA binding motif prote 99.4 1.8E-13 6.3E-18 128.2 3.9 79 271-350 21-104 (114)
291 1rk8_A CG8781-PA, CG8781-PA pr 99.4 1.1E-12 3.6E-17 131.5 9.6 85 269-353 66-155 (165)
292 2cqg_A TDP-43, TAR DNA-binding 99.4 2.3E-12 7.8E-17 118.4 11.1 79 357-437 12-95 (103)
293 1wg1_A KIAA1579 protein, homol 99.4 5.8E-13 2E-17 119.5 6.9 76 273-350 3-78 (88)
294 1fj7_A Nucleolin RBD1, protein 99.4 2.9E-13 9.8E-18 124.1 4.9 79 358-438 15-98 (101)
295 2e44_A Insulin-like growth fac 99.4 1.9E-12 6.6E-17 117.3 10.3 80 272-351 12-93 (96)
296 2dgw_A Probable RNA-binding pr 99.4 1E-12 3.5E-17 118.1 8.2 77 358-436 8-88 (91)
297 2cq2_A Hypothetical protein LO 99.4 9.5E-13 3.2E-17 125.4 8.3 79 271-350 21-106 (114)
298 2e5g_A U6 snRNA-specific termi 99.4 3E-12 1E-16 116.0 11.3 80 273-353 6-85 (94)
299 2cpy_A RNA-binding protein 12; 99.4 6E-13 2E-17 125.3 6.6 82 357-439 12-98 (114)
300 2e5g_A U6 snRNA-specific termi 99.4 1.5E-12 5.1E-17 118.0 8.8 77 359-436 7-83 (94)
301 2jwn_A Embryonic polyadenylate 99.4 1.3E-12 4.5E-17 124.0 8.8 77 274-351 35-116 (124)
302 1wel_A RNA-binding protein 12; 99.3 5E-13 1.7E-17 127.6 5.7 79 271-350 21-104 (124)
303 1uaw_A Mouse-musashi-1; RNP-ty 99.3 4.8E-13 1.7E-17 116.1 5.1 71 361-432 1-76 (77)
304 1wg5_A Heterogeneous nuclear r 99.3 1.7E-12 5.8E-17 120.3 8.7 78 358-436 13-95 (104)
305 3zzy_A Polypyrimidine tract-bi 99.3 2.3E-12 7.9E-17 125.4 10.0 80 273-352 26-108 (130)
306 2db1_A Heterogeneous nuclear r 99.3 6.1E-13 2.1E-17 126.4 5.6 80 358-438 15-101 (118)
307 2hgl_A HNRPF protein, heteroge 99.3 5.9E-13 2E-17 130.4 5.6 80 358-438 42-128 (136)
308 3egn_A RNA-binding protein 40; 99.3 2.1E-12 7E-17 126.0 9.2 82 272-353 42-133 (143)
309 1wez_A HnRNP H', FTP-3, hetero 99.3 2.2E-12 7.5E-17 119.7 8.8 79 271-351 11-93 (102)
310 2diu_A KIAA0430 protein; struc 99.3 2.2E-12 7.6E-17 118.6 8.5 76 273-353 6-87 (96)
311 2cpy_A RNA-binding protein 12; 99.3 9.2E-13 3.1E-17 124.0 5.9 80 271-351 11-95 (114)
312 2hzc_A Splicing factor U2AF 65 99.3 3.5E-12 1.2E-16 113.2 9.3 72 358-431 4-86 (87)
313 2xs2_A Deleted in azoospermia- 99.3 5.8E-13 2E-17 122.3 4.3 81 271-353 5-89 (102)
314 2lcw_A RNA-binding protein FUS 99.0 1.3E-13 4.6E-18 129.7 0.0 83 271-353 3-98 (116)
315 1sjr_A Polypyrimidine tract-bi 99.3 3.6E-12 1.2E-16 128.6 10.3 82 272-353 43-127 (164)
316 3d2w_A TAR DNA-binding protein 99.3 2.4E-12 8.4E-17 116.4 8.2 78 271-352 7-86 (89)
317 1wf0_A TDP-43, TAR DNA-binding 99.3 7.9E-13 2.7E-17 118.3 4.8 76 359-438 4-81 (88)
318 3egn_A RNA-binding protein 40; 99.3 3.2E-12 1.1E-16 124.6 9.5 81 358-438 43-133 (143)
319 2lmi_A GRSF-1, G-rich sequence 99.3 7E-13 2.4E-17 123.5 4.3 81 358-439 9-96 (107)
320 1iqt_A AUF1, heterogeneous nuc 99.3 9.3E-13 3.2E-17 113.9 4.6 70 277-347 1-75 (75)
321 2lcw_A RNA-binding protein FUS 99.0 1.8E-13 6.1E-18 128.9 0.0 81 358-438 5-98 (116)
322 2db1_A Heterogeneous nuclear r 99.3 1.1E-12 3.6E-17 124.7 5.3 77 272-349 14-97 (118)
323 2diu_A KIAA0430 protein; struc 99.3 3.4E-12 1.2E-16 117.4 8.4 72 360-436 9-85 (96)
324 2lmi_A GRSF-1, G-rich sequence 99.3 1.6E-12 5.4E-17 121.1 6.1 79 271-350 7-92 (107)
325 2hzc_A Splicing factor U2AF 65 99.3 2.5E-12 8.6E-17 114.1 7.1 72 273-346 4-86 (87)
326 2hgn_A Heterogeneous nuclear r 99.3 6.7E-13 2.3E-17 130.5 3.7 120 313-437 2-125 (139)
327 3beg_B Splicing factor, argini 99.3 3.3E-12 1.1E-16 120.6 8.3 71 273-345 14-84 (115)
328 1wel_A RNA-binding protein 12; 99.3 5.5E-13 1.9E-17 127.3 2.9 81 358-439 23-108 (124)
329 2dnn_A RNA-binding protein 12; 99.3 3.7E-12 1.3E-16 120.1 8.5 75 359-435 15-93 (109)
330 3u1l_A PRE-mRNA-splicing facto 99.3 3.7E-12 1.3E-16 136.0 9.2 105 333-438 107-232 (240)
331 3q2s_C Cleavage and polyadenyl 99.3 2E-12 6.7E-17 136.9 7.1 76 274-349 67-149 (229)
332 1wf0_A TDP-43, TAR DNA-binding 99.3 1.9E-12 6.4E-17 115.8 5.8 79 273-353 3-81 (88)
333 2bz2_A Negative elongation fac 99.3 3.8E-12 1.3E-16 121.8 8.2 78 358-438 37-114 (121)
334 2hgl_A HNRPF protein, heteroge 99.3 1.8E-12 6.2E-17 127.0 5.7 78 271-349 40-124 (136)
335 3q2s_C Cleavage and polyadenyl 99.3 1.7E-12 5.9E-17 137.4 5.9 80 359-438 67-153 (229)
336 2e5i_A Heterogeneous nuclear r 99.3 7.9E-12 2.7E-16 120.7 9.8 76 276-352 26-104 (124)
337 1iqt_A AUF1, heterogeneous nuc 99.3 1.4E-12 4.9E-17 112.7 4.0 70 362-432 1-75 (75)
338 2xs2_A Deleted in azoospermia- 99.3 2.1E-12 7.1E-17 118.5 5.3 79 357-437 6-88 (102)
339 2bz2_A Negative elongation fac 99.3 5.3E-12 1.8E-16 120.8 8.3 79 271-352 35-113 (121)
340 1wez_A HnRNP H', FTP-3, hetero 99.3 2.8E-12 9.5E-17 119.0 6.1 77 358-436 13-93 (102)
341 2voo_A Lupus LA protein; RNA-b 99.3 9.7E-12 3.3E-16 128.3 10.8 113 321-434 63-186 (193)
342 2f3j_A RNA and export factor b 99.3 5.2E-12 1.8E-16 128.7 8.6 80 271-350 84-167 (177)
343 2f3j_A RNA and export factor b 99.3 9.7E-12 3.3E-16 126.6 9.2 79 358-436 86-168 (177)
344 2dnn_A RNA-binding protein 12; 99.2 5.3E-12 1.8E-16 119.0 6.5 75 273-349 14-92 (109)
345 2hgn_A Heterogeneous nuclear r 99.2 3.8E-12 1.3E-16 125.2 5.3 80 271-352 42-125 (139)
346 2pe8_A Splicing factor 45; RRM 99.2 3.2E-11 1.1E-15 112.9 10.5 77 358-434 6-93 (105)
347 2hgm_A HNRPF protein, heteroge 99.2 1.1E-11 3.9E-16 119.9 7.2 77 271-349 38-120 (126)
348 2dha_A FLJ20171 protein; RRM d 99.2 3.4E-12 1.2E-16 122.9 3.5 82 359-441 22-111 (123)
349 2hgm_A HNRPF protein, heteroge 99.2 8.9E-12 3E-16 120.6 6.4 77 358-436 40-122 (126)
350 2dha_A FLJ20171 protein; RRM d 99.2 5.3E-12 1.8E-16 121.6 4.6 76 273-349 21-104 (123)
351 3u1l_A PRE-mRNA-splicing facto 99.2 1.7E-11 5.7E-16 130.9 8.2 81 272-353 131-232 (240)
352 2dit_A HIV TAT specific factor 99.2 5.7E-11 2E-15 111.5 10.9 83 271-353 11-105 (112)
353 2dnl_A Cytoplasmic polyadenyla 99.2 2.9E-11 9.9E-16 113.8 8.4 72 273-347 6-85 (114)
354 2dit_A HIV TAT specific factor 99.2 6.1E-11 2.1E-15 111.3 10.4 80 357-436 12-103 (112)
355 3pgw_S U1-70K; protein-RNA com 99.2 2.9E-11 9.8E-16 139.5 9.1 80 272-351 99-183 (437)
356 2dnl_A Cytoplasmic polyadenyla 99.2 4.6E-11 1.6E-15 112.4 8.4 77 359-438 7-91 (114)
357 2pe8_A Splicing factor 45; RRM 99.1 8.1E-11 2.8E-15 110.1 8.8 77 273-349 6-93 (105)
358 3v4m_A Splicing factor U2AF 65 99.1 9.8E-11 3.3E-15 109.5 8.9 78 358-435 3-97 (105)
359 2voo_A Lupus LA protein; RNA-b 99.1 1.6E-10 5.5E-15 119.1 8.6 75 274-349 108-186 (193)
360 2j8a_A Histone-lysine N-methyl 99.1 9.4E-11 3.2E-15 113.7 5.1 72 276-347 3-93 (136)
361 2d9o_A DNAJ (HSP40) homolog, s 99.0 2.8E-10 9.4E-15 105.9 7.9 66 370-437 27-92 (100)
362 2j8a_A Histone-lysine N-methyl 99.0 1.6E-10 5.3E-15 112.1 5.9 80 361-440 3-101 (136)
363 1jmt_A Splicing factor U2AF 35 99.0 1.2E-10 4E-15 108.7 4.7 68 365-432 20-103 (104)
364 3ue2_A Poly(U)-binding-splicin 99.0 5.4E-10 1.9E-14 106.9 8.4 76 359-434 19-108 (118)
365 3v4m_A Splicing factor U2AF 65 99.0 6.2E-10 2.1E-14 104.0 7.7 76 273-348 3-95 (105)
366 3tht_A Alkylated DNA repair pr 99.0 7.1E-10 2.4E-14 124.1 9.5 76 357-433 15-97 (345)
367 3s6e_A RNA-binding protein 39; 99.0 9.8E-10 3.4E-14 104.5 9.0 79 358-436 5-94 (114)
368 2d9o_A DNAJ (HSP40) homolog, s 99.0 3.1E-09 1.1E-13 98.7 11.0 66 285-352 27-92 (100)
369 3tht_A Alkylated DNA repair pr 98.9 8E-10 2.7E-14 123.7 8.2 76 271-347 14-96 (345)
370 1jmt_A Splicing factor U2AF 35 98.9 4.3E-10 1.5E-14 104.9 3.4 68 280-347 20-103 (104)
371 1uw4_A UPF3X; nonsense mediate 98.8 7.8E-09 2.7E-13 94.6 8.7 85 811-897 2-89 (91)
372 3ue2_A Poly(U)-binding-splicin 98.8 6.4E-09 2.2E-13 99.4 8.1 76 273-348 18-107 (118)
373 3s6e_A RNA-binding protein 39; 98.8 1E-08 3.4E-13 97.5 8.1 77 272-348 4-91 (114)
374 2dnr_A Synaptojanin-1; RRM dom 98.8 2E-08 6.7E-13 91.7 8.8 75 357-435 4-86 (91)
375 1owx_A Lupus LA protein, SS-B, 98.7 4.9E-08 1.7E-12 93.9 8.5 81 358-439 16-100 (121)
376 2l08_A Regulator of nonsense t 98.6 1.5E-08 5E-13 93.5 3.7 84 811-896 10-96 (97)
377 1ufw_A Synaptojanin 2; RNP dom 98.5 1.6E-07 5.4E-12 86.3 6.1 74 357-434 12-94 (95)
378 1owx_A Lupus LA protein, SS-B, 98.4 1.1E-06 3.6E-11 84.6 9.7 75 271-346 14-92 (121)
379 2dnr_A Synaptojanin-1; RRM dom 98.3 4.9E-07 1.7E-11 82.5 6.2 74 273-350 5-86 (91)
380 3dxb_A Thioredoxin N-terminall 98.3 5.6E-07 1.9E-11 93.6 7.6 64 371-434 140-212 (222)
381 3dxb_A Thioredoxin N-terminall 98.1 4.2E-06 1.4E-10 87.0 7.4 62 287-348 141-211 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.0 1.2E-05 4.3E-10 75.4 8.6 72 359-431 20-96 (117)
383 1ufw_A Synaptojanin 2; RNP dom 98.0 5.3E-06 1.8E-10 76.2 5.7 72 273-348 13-93 (95)
384 2dhx_A Poly (ADP-ribose) polym 97.3 0.0016 5.5E-08 60.6 11.0 89 273-373 6-99 (104)
385 2l9w_A U4/U6 snRNA-associated- 97.2 0.00054 1.9E-08 64.4 6.4 72 273-345 19-95 (117)
386 2dhx_A Poly (ADP-ribose) polym 96.8 0.004 1.4E-07 58.0 8.8 77 359-439 7-88 (104)
387 1wey_A Calcipressin 1; structu 96.8 0.0013 4.3E-08 61.5 5.1 76 360-436 5-85 (104)
388 1wwh_A Nucleoporin 35, nucleop 96.5 0.0097 3.3E-07 56.9 9.1 76 358-436 22-98 (119)
389 1wey_A Calcipressin 1; structu 96.2 0.0051 1.7E-07 57.4 5.3 76 275-351 5-85 (104)
390 1uw4_A UPF3X; nonsense mediate 95.1 0.049 1.7E-06 49.7 7.5 65 276-340 2-73 (91)
391 1whv_A Poly(A)-specific ribonu 94.3 0.092 3.1E-06 48.5 7.2 56 274-333 15-70 (100)
392 1wwh_A Nucleoporin 35, nucleop 94.2 0.099 3.4E-06 50.0 7.3 71 273-346 22-93 (119)
393 3p3d_A Nucleoporin 53; structu 94.0 0.04 1.4E-06 53.5 4.2 73 360-434 7-98 (132)
394 3ctr_A Poly(A)-specific ribonu 93.1 0.081 2.8E-06 49.0 4.5 54 276-333 7-60 (101)
395 3pq1_A Poly(A) RNA polymerase; 92.4 0.058 2E-06 62.6 3.2 56 274-330 52-107 (464)
396 3pq1_A Poly(A) RNA polymerase; 92.1 0.053 1.8E-06 62.9 2.4 57 358-415 51-107 (464)
397 3ctr_A Poly(A)-specific ribonu 91.5 0.12 4E-06 47.9 3.5 53 362-418 8-60 (101)
398 1whv_A Poly(A)-specific ribonu 91.4 0.18 6.3E-06 46.5 4.7 54 361-418 17-70 (100)
399 2l08_A Regulator of nonsense t 90.7 0.37 1.3E-05 44.4 6.0 68 273-340 7-81 (97)
400 3p3d_A Nucleoporin 53; structu 87.7 0.41 1.4E-05 46.4 4.1 71 275-347 7-96 (132)
401 3d45_A Poly(A)-specific ribonu 66.5 10 0.00035 44.4 7.8 56 275-334 440-495 (507)
402 3d45_A Poly(A)-specific ribonu 50.7 23 0.00077 41.5 7.1 54 361-418 441-494 (507)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.4e-32 Score=296.08 Aligned_cols=235 Identities=15% Similarity=0.178 Sum_probs=198.7
Q ss_pred cccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhH
Q 001991 147 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFD 225 (985)
Q Consensus 147 ~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~ff~t~Edaee~~ 225 (985)
..|||+||+. ++.+.|.+. |+.. | |+... -+.++|||||. |.+.++|+ .
T Consensus 23 ~~l~V~nLp~~~te~~l~~~--------------F~~~--------G-i~~~~----~~~~~g~afV~-f~~~~~A~--~ 72 (284)
T 3smz_A 23 RKILIRGLPGDVTNQEVHDL--------------LSDY--------E-LKYCF----VDKYKGTAFVT-LLNGEQAE--A 72 (284)
T ss_dssp CEEEEECCCTTCCHHHHHHH--------------TTTS--------C-EEEEE----EETTTTEEEEE-ESSHHHHH--H
T ss_pred CEEEEeCCCCCCCHHHHHHH--------------HHHc--------C-CEEEE----EecCCCEEEEE-eCCHHHHH--H
Confidence 5799999998 888888887 7443 3 22211 15589999999 56888888 8
Q ss_pred HHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEE
Q 001991 226 LFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI 305 (985)
Q Consensus 226 ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV 305 (985)
|+..++|..+. +..+.+.. ....++|||+|||.++++++|+++|++||.|..+
T Consensus 73 A~~~l~~~~~~-g~~i~v~~--------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~ 125 (284)
T 3smz_A 73 AINAFHQSRLR-ERELSVQL--------------------------QPTDALLCVANLPPSLTQQQFEELVRPFGSLERC 125 (284)
T ss_dssp HHHHHTTCEET-TEECEEEE--------------------------CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEE
T ss_pred HHHHcCCCeeC-CeEEEEEe--------------------------cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEE
Confidence 99999999997 43322211 1245799999999999999999999999999998
Q ss_pred Ee-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCcccccccceeeecCCCCC-CHHHHHH
Q 001991 306 YT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSV-STEELHQ 379 (985)
Q Consensus 306 ki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~sv-TeedLre 379 (985)
++ ++.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.++.... ......+|||+|||..+ ++++|++
T Consensus 126 ~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~-~~~~~~~l~v~nlp~~~~~~~~l~~ 204 (284)
T 3smz_A 126 FLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTP-ALLHSRCLCVDRLPPGFNDVDALCR 204 (284)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCT-TTTSCSEEEEECCCTTCCCHHHHHH
T ss_pred EEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCc-ccCCccEEEEecCCcccCCHHHHHH
Confidence 75 56789999999999999999999999999999999999998765442 33456799999999996 9999999
Q ss_pred HhhccCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcchhh
Q 001991 380 IFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARR 439 (985)
Q Consensus 380 lFs~fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~~Rr 439 (985)
+|++||.|.+|++..+ ++|+|||+|.+.++|.+|++.|||..|+|++|+|.|+.++..++
T Consensus 205 ~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 268 (284)
T 3smz_A 205 ALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGR 268 (284)
T ss_dssp HTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCHH
T ss_pred HhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCccc
Confidence 9999999999988754 47899999999999999999999999999999999999988766
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=3e-31 Score=286.89 Aligned_cols=237 Identities=15% Similarity=0.195 Sum_probs=189.2
Q ss_pred CCCcccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhh
Q 001991 144 SSLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLE 222 (985)
Q Consensus 144 Ssl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~ff~t~Edae 222 (985)
.....|||+||+. ++.+.|.+. |+...++....+ ..+. .+ ++|||||. |.+.++|+
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~--------------F~~~G~i~~v~i---~~~~----~~-~~g~afV~-f~~~~~A~ 95 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKY--------------FKHCGPIIHVDV---ADSL----KK-NFRFARIE-FARYDGAL 95 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHH--------------HGGGSCEEEEEE---EECT----TS-SSEEEEEE-ESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHH--------------HHhcCCeEEEEE---EECC----CC-CcEEEEEE-ECCHHHHH
Confidence 3456899999998 888888888 744433322211 1122 22 68999999 55888878
Q ss_pred hhHHHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccC-c
Q 001991 223 DFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFG-D 301 (985)
Q Consensus 223 e~~ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG-~ 301 (985)
.|+. ++|..+. +..+.+.. ...++|||+|||.++++++|+++|++|| .
T Consensus 96 --~A~~-~~~~~~~-g~~i~v~~---------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~ 144 (292)
T 2ghp_A 96 --AAIT-KTHKVVG-QNEIIVSH---------------------------LTECTLWMTNFPPSYTQRNIRDLLQDINVV 144 (292)
T ss_dssp --HHHT-TTTCEET-TEECEEEE---------------------------CCSCEEEEECCCTTCCHHHHHHHHHHTTCC
T ss_pred --HHHH-hCCcEeC-CcEEEEEE---------------------------CCCCEEEEECCCCCCCHHHHHHHHHHhCCC
Confidence 7884 7999997 33322111 2478999999999999999999999999 9
Q ss_pred EEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCc---ccccccceeeecCCCC-CC
Q 001991 302 IRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSE---KDANQGTLVVFNLDSS-VS 373 (985)
Q Consensus 302 I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~~~~---~~~~~~tLfV~NLp~s-vT 373 (985)
|..|++ .+.++|||||+|.+.++|.+|++.|+|..+.|++|.|.++.++..... ......+|||+|||.. ++
T Consensus 145 i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t 224 (292)
T 2ghp_A 145 ALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLD 224 (292)
T ss_dssp CCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCC
T ss_pred eEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCC
Confidence 999986 356899999999999999999999999999999999999987765432 2345679999999999 99
Q ss_pred HHHHHHHhhccCCEEEEEEcCC------CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCc
Q 001991 374 TEELHQIFGIYGEIREIRDTQH------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 435 (985)
Q Consensus 374 eedLrelFs~fG~I~~Vri~~~------skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k 435 (985)
+++|+++|++||.|..|++..+ ++|||||+|.+.++|.+|+ .|||..|+|++|+|.|++++
T Consensus 225 ~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 225 ENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred HHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999999999999999998754 4689999999999999999 99999999999999999986
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=7.8e-30 Score=265.33 Aligned_cols=166 Identities=19% Similarity=0.343 Sum_probs=148.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
..+.++|||+|||+++|+++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 357799999999999999999999999999999976 578899999999999999999999999999999999998
Q ss_pred cCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC---CCcEEEEEEcCHHHHHHHHHHhCCceeC
Q 001991 347 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH---KHNHKFIEFYDIRAAETALRTLNRSDVA 423 (985)
Q Consensus 347 a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~---skGfaFVeF~d~edA~kAI~~LNG~~I~ 423 (985)
+...... ......+|||+|||..+|+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|++.|||..|+
T Consensus 92 ~~~~~~~--~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 92 SQRDPSL--RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp CCCCTHH--HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred ccccccc--cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 8654322 2234568999999999999999999999999999998754 5789999999999999999999999999
Q ss_pred CceEEEEeccCcchhh
Q 001991 424 GKQIKLEASRPGGARR 439 (985)
Q Consensus 424 Gr~IkV~~A~~k~~Rr 439 (985)
|++|+|.+++++.++.
T Consensus 170 g~~i~V~~a~~~~~~~ 185 (213)
T 4f02_A 170 DRKVFVGRFKSRKERE 185 (213)
T ss_dssp TEECEEEECCCHHHHH
T ss_pred CEEEEEEEcCCCcccc
Confidence 9999999999876554
No 4
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=1.7e-28 Score=264.18 Aligned_cols=195 Identities=16% Similarity=0.285 Sum_probs=172.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCC
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 352 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~ 352 (985)
.++++|||+|||.++|+++|+++|+.|| |..+++ ++++|||||+|.+.++|++|++.|++..+.|++|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----
Confidence 3678999999999999999999999999 999998 8899999999999999999999999999999999999853
Q ss_pred CCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceE
Q 001991 353 PSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 427 (985)
Q Consensus 353 ~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~I 427 (985)
...+|||+|||..+++++|+++|++||.|..|++..+ ++|||||+|.+.++|.+|++.|||..+.|++|
T Consensus 94 ------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 94 ------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167 (284)
T ss_dssp ------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred ------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 3468999999999999999999999999999988643 46899999999999999999999999999999
Q ss_pred EEEeccCcchhhhhhhhhhhccCCCcc-cCCCCCC-Ccccc----ccccceEEE---ecCCCCccee
Q 001991 428 KLEASRPGGARRFMVQSEQEQDDLNLC-QIPFDDL-SSGQM----VSSGVITST---CMDNGSIQVL 485 (985)
Q Consensus 428 kV~~A~~k~~Rrl~qq~eq~q~e~nLy-kNlp~sv-t~e~L----~~fG~I~S~---~~enG~srgf 485 (985)
.|.++.++..+. ......+|| +|||.++ ++++| +.||.|.++ ...+|.++||
T Consensus 168 ~v~~a~~~~~~~------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~ 228 (284)
T 3smz_A 168 YVHWTDAGQLTP------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGF 228 (284)
T ss_dssp EEEECCGGGCCT------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEE
T ss_pred EEEECCCCCCCc------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccE
Confidence 999998754221 123446788 9999996 88888 899999888 4467777775
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.1e-28 Score=240.17 Aligned_cols=157 Identities=19% Similarity=0.333 Sum_probs=143.4
Q ss_pred cEEEEecCCCCCCHHHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCC
Q 001991 276 RTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 351 (985)
Q Consensus 276 rtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~ 351 (985)
|+|||+|||.++|+++|+++|++||+|.+|++ .++++|||||+|.+.++|++|++.|+|..+.|+.|.|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 68999999999999999999999999999986 46688999999999999999999999999999999999987665
Q ss_pred CCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCce
Q 001991 352 NPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 426 (985)
Q Consensus 352 ~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~ 426 (985)
.. ......+|||+|||..+++++|+++|++||.|..+++..+ ++|||||+|.+.++|.+|++.|||..++|++
T Consensus 81 ~~--~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 81 QS--SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp CC--CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CC--CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 43 3445679999999999999999999999999999988643 4689999999999999999999999999999
Q ss_pred EEEEeccC
Q 001991 427 IKLEASRP 434 (985)
Q Consensus 427 IkV~~A~~ 434 (985)
|+|.||++
T Consensus 159 i~v~~a~~ 166 (166)
T 3md3_A 159 LRINWAAK 166 (166)
T ss_dssp CEEEESCC
T ss_pred EEEEecCC
Confidence 99999864
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=6.4e-28 Score=238.03 Aligned_cols=155 Identities=24% Similarity=0.433 Sum_probs=142.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 348 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~ 348 (985)
+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 5789999999999999999999999999999975 46688999999999999999999999999999999999998
Q ss_pred CCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCC-----CcEEEEEEcCHHHHHHHHHHhCCceeC
Q 001991 349 PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHK-----HNHKFIEFYDIRAAETALRTLNRSDVA 423 (985)
Q Consensus 349 pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~s-----kGfaFVeF~d~edA~kAI~~LNG~~I~ 423 (985)
++.. .....+|||+|||..+++++|+++|++||.|..+++..+. +|||||+|.+.++|.+|++.|||..+.
T Consensus 82 ~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 157 (168)
T 1b7f_A 82 PGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE 157 (168)
T ss_dssp CCSS----TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCcc----cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEec
Confidence 7643 2456799999999999999999999999999999986543 689999999999999999999999998
Q ss_pred C--ceEEEEec
Q 001991 424 G--KQIKLEAS 432 (985)
Q Consensus 424 G--r~IkV~~A 432 (985)
| ++|+|.||
T Consensus 158 g~~~~l~V~~A 168 (168)
T 1b7f_A 158 GGSQPLSVRLA 168 (168)
T ss_dssp TCSSCCEEEEC
T ss_pred CCCeEEEEEeC
Confidence 7 99999986
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.95 E-value=7.9e-28 Score=236.31 Aligned_cols=155 Identities=25% Similarity=0.431 Sum_probs=141.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 348 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~ 348 (985)
++++|||+|||+++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 3689999999999999999999999999999976 56788999999999999999999999999999999999997
Q ss_pred CCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeC
Q 001991 349 PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVA 423 (985)
Q Consensus 349 pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~ 423 (985)
+... .....+|||+|||..+++++|+++|++||.|..+++..+ ++|||||+|.+.++|.+|++.|||..+.
T Consensus 81 ~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 156 (167)
T 1fxl_A 81 PSSA----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS 156 (167)
T ss_dssp CCCG----GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCcc----cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC
Confidence 6543 345678999999999999999999999999999998654 3789999999999999999999999999
Q ss_pred Cce--EEEEec
Q 001991 424 GKQ--IKLEAS 432 (985)
Q Consensus 424 Gr~--IkV~~A 432 (985)
|+. |+|.||
T Consensus 157 g~~~~i~v~~A 167 (167)
T 1fxl_A 157 GATEPITVKFA 167 (167)
T ss_dssp TCSSCCEEEEC
T ss_pred CCccceEEEeC
Confidence 964 888886
No 8
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.95 E-value=5.9e-28 Score=261.03 Aligned_cols=203 Identities=14% Similarity=0.167 Sum_probs=166.0
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEec---cccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 269 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTA---CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 269 ~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkit---gksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
...+.+.++|||+|||.++|+++|+++|+.||+|..|++. ..++|||||+|.+.++|++|+ .+++..+.|+.|.|.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVS 113 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEE
Confidence 3456778999999999999999999999999999999872 225899999999999999999 499999999999998
Q ss_pred ccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccC-CEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCc
Q 001991 346 YSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYG-EIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRS 420 (985)
Q Consensus 346 ~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG-~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~ 420 (985)
++ ..++|||+|||..+++++|+++|++|| .|..|++..+ ++|||||+|.+.++|.+|++.|||.
T Consensus 114 ~~-----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 182 (292)
T 2ghp_A 114 HL-----------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGL 182 (292)
T ss_dssp EC-----------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTC
T ss_pred EC-----------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 86 367999999999999999999999999 9999998753 5899999999999999999999999
Q ss_pred eeCCceEEEEeccCcchhhhhhhhhhhccCCCcc-cCCCCC-CCcccc----ccccceEEEec---CC--CCccee
Q 001991 421 DVAGKQIKLEASRPGGARRFMVQSEQEQDDLNLC-QIPFDD-LSSGQM----VSSGVITSTCM---DN--GSIQVL 485 (985)
Q Consensus 421 ~I~Gr~IkV~~A~~k~~Rrl~qq~eq~q~e~nLy-kNlp~s-vt~e~L----~~fG~I~S~~~---en--G~srgf 485 (985)
.+.|++|.|.++.++...... .........|| +|||.+ +++++| ..||.|..+.. .+ |.++||
T Consensus 183 ~~~g~~l~v~~a~~~~~~~~~--~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~ 256 (292)
T 2ghp_A 183 KIEGYTLVTKVSNPLEKSKRT--DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCC 256 (292)
T ss_dssp EETTEECEEEECCCC-----------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEE
T ss_pred EeCCcEEEEEECCCCcccccc--cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceE
Confidence 999999999999876533211 12233446788 999999 999999 89999999933 23 667765
No 9
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.95 E-value=1e-27 Score=242.82 Aligned_cols=168 Identities=18% Similarity=0.332 Sum_probs=141.4
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
....+.++|||+|||+++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++. ++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 45567899999999999999999999999999999876 467899999999999999999974 999999999999
Q ss_pred cccCCCCCCC--cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHh
Q 001991 345 HYSIPKDNPS--EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTL 417 (985)
Q Consensus 345 ~~a~pk~~~~--~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~L 417 (985)
.++.++.... ......++|||+|||.++++++|+++|++||.|..|++..+ ++|||||+|.+.++|.+|++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~- 165 (196)
T 1l3k_A 87 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ- 165 (196)
T ss_dssp EECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-
T ss_pred ecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-
Confidence 9987665432 22345579999999999999999999999999999998754 478999999999999999985
Q ss_pred CCceeCCceEEEEeccCcchhh
Q 001991 418 NRSDVAGKQIKLEASRPGGARR 439 (985)
Q Consensus 418 NG~~I~Gr~IkV~~A~~k~~Rr 439 (985)
+|..|+|+.|.|.++.++.+.+
T Consensus 166 ~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 166 KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp SCCEETTEECEEEECC------
T ss_pred CCcEECCEEEEEEecCChhHhc
Confidence 8999999999999999887654
No 10
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.95 E-value=1.2e-27 Score=245.80 Aligned_cols=165 Identities=18% Similarity=0.365 Sum_probs=146.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 347 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a 347 (985)
.+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 35689999999999999999999999999999987 5678999999999999999999999999999999999887
Q ss_pred CCCCCCC-------cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHH
Q 001991 348 IPKDNPS-------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALR 415 (985)
Q Consensus 348 ~pk~~~~-------~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~ 415 (985)
....... ......++|||+|||.++++++|+++|++||.|..|++..+ ++|||||+|.+.++|.+|++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 6554221 11234579999999999999999999999999999998754 37899999999999999999
Q ss_pred HhCCceeCCceEEEEeccCcch
Q 001991 416 TLNRSDVAGKQIKLEASRPGGA 437 (985)
Q Consensus 416 ~LNG~~I~Gr~IkV~~A~~k~~ 437 (985)
.|||..|+|++|+|.++.++..
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSCSS
T ss_pred HccCCEeCCcEEEEEEecCCCC
Confidence 9999999999999999988653
No 11
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=2.5e-27 Score=254.88 Aligned_cols=164 Identities=24% Similarity=0.454 Sum_probs=147.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHH----HhhcccCcEEEEEe--ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLr----elFs~fG~I~sVki--tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
+..++++|||+|||.++++++|+ ++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 45678999999999999999977 89999999999986 6789999999999999999999999999999999999
Q ss_pred cccCCCCCCC----------------------------------------------------------------------
Q 001991 345 HYSIPKDNPS---------------------------------------------------------------------- 354 (985)
Q Consensus 345 ~~a~pk~~~~---------------------------------------------------------------------- 354 (985)
.|+..+....
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 9986654200
Q ss_pred -------------------------------------cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCC
Q 001991 355 -------------------------------------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKH 397 (985)
Q Consensus 355 -------------------------------------~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~sk 397 (985)
......++|||+|||..+++++|+++|++||.|.+|++..+.+
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~ 244 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCC
Confidence 0112346899999999999999999999999999999998888
Q ss_pred cEEEEEEcCHHHHHHHHHHhCCceeC-CceEEEEeccC
Q 001991 398 NHKFIEFYDIRAAETALRTLNRSDVA-GKQIKLEASRP 434 (985)
Q Consensus 398 GfaFVeF~d~edA~kAI~~LNG~~I~-Gr~IkV~~A~~ 434 (985)
|||||+|.+.++|.+|++.|||..|. |++|+|.|++.
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 99999999999999999999999999 99999999863
No 12
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=3.6e-27 Score=247.87 Aligned_cols=164 Identities=22% Similarity=0.316 Sum_probs=147.8
Q ss_pred CCCCcEEEEecCCC-CCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001991 272 EHPSRTLFVRNINS-NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 350 (985)
Q Consensus 272 e~~srtLfVgNLP~-~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk 350 (985)
..++++|||+|||+ ++++++|+++|++||.|..|++....+|||||+|.+.++|++|++.|++..|.|++|.|.++.++
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 45789999999999 99999999999999999999986566899999999999999999999999999999999998755
Q ss_pred CCCCcc-------------------------------cccccceeeecCCCCCCHHHHHHHhhccC-CEEEEEEcCCCCc
Q 001991 351 DNPSEK-------------------------------DANQGTLVVFNLDSSVSTEELHQIFGIYG-EIREIRDTQHKHN 398 (985)
Q Consensus 351 ~~~~~~-------------------------------~~~~~tLfV~NLp~svTeedLrelFs~fG-~I~~Vri~~~skG 398 (985)
.....+ ..+.++|||+|||..+++++|+++|++|| .|..|++.++.+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g 190 (229)
T 2adc_A 111 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK 190 (229)
T ss_dssp CCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTT
T ss_pred cccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCc
Confidence 211000 12357899999999999999999999999 9999999887899
Q ss_pred EEEEEEcCHHHHHHHHHHhCCceeC-CceEEEEeccCc
Q 001991 399 HKFIEFYDIRAAETALRTLNRSDVA-GKQIKLEASRPG 435 (985)
Q Consensus 399 faFVeF~d~edA~kAI~~LNG~~I~-Gr~IkV~~A~~k 435 (985)
||||+|.+.++|.+|++.|||..+. |++|+|.|++++
T Consensus 191 ~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 191 MALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999999999999999999999999 999999999874
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=9.3e-28 Score=239.55 Aligned_cols=162 Identities=20% Similarity=0.278 Sum_probs=144.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEE----EeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI----YTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV----kitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
...+.++|||+|||.++++++|+++|++||.|..+ ..+++++|||||+|.+.++|++|+ +|++..+.|++|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 45678999999999999999999999999976542 125789999999999999999999 5999999999999999
Q ss_pred cCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCce
Q 001991 347 SIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 426 (985)
Q Consensus 347 a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~ 426 (985)
+.++... .....++|||+|||..+++++|+++|++||.|..+...+.++|||||+|.+.++|.+|++.|||..|+|++
T Consensus 88 ~~~~~~~--~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (175)
T 1fje_B 88 PKGRDSK--KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 165 (175)
T ss_dssp CCCSSCS--TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEE
T ss_pred CCCcccc--ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 9876543 33467799999999999999999999999999888434557899999999999999999999999999999
Q ss_pred EEEEeccCc
Q 001991 427 IKLEASRPG 435 (985)
Q Consensus 427 IkV~~A~~k 435 (985)
|+|.|++++
T Consensus 166 i~v~~a~~k 174 (175)
T 1fje_B 166 VSLYYTGEK 174 (175)
T ss_dssp EEEEECSSC
T ss_pred EEEEecCCC
Confidence 999999876
No 14
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=3.8e-27 Score=233.73 Aligned_cols=153 Identities=16% Similarity=0.346 Sum_probs=140.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccc----C-------cEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccc
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQF----G-------DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKL 342 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~f----G-------~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L 342 (985)
+.++|||+|||+++|+++|+++|++| | .|..+++ ++++|||||+|.+.++|++|+ .+++..+.|++|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~-~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 80 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-ETTTTEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe-cCCCCEEEEEeCCHHHHHHHH-HhCCcEecCcee
Confidence 57899999999999999999999999 6 7888877 678999999999999999999 899999999999
Q ss_pred cccccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHh
Q 001991 343 DIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTL 417 (985)
Q Consensus 343 ~V~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~L 417 (985)
.|.++.+.... ....+|||+|||..+++++|+++|++||.|..|++..+ ++|||||+|.+.++|.+|++.|
T Consensus 81 ~v~~~~~~~~~----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 156 (172)
T 2g4b_A 81 KIRRPHDYQPL----PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 156 (172)
T ss_dssp EEECCSSCCCC----TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHH
T ss_pred eecCCcccCCC----CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 99987654332 34679999999999999999999999999999998655 3789999999999999999999
Q ss_pred CCceeCCceEEEEec
Q 001991 418 NRSDVAGKQIKLEAS 432 (985)
Q Consensus 418 NG~~I~Gr~IkV~~A 432 (985)
||..++|++|+|.||
T Consensus 157 ~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 157 NGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEETTEECEEEEC
T ss_pred CCCEECCeEEEEEeC
Confidence 999999999999997
No 15
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=2.7e-27 Score=241.49 Aligned_cols=162 Identities=22% Similarity=0.313 Sum_probs=146.3
Q ss_pred CCcEEEEecCCC-CCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCC
Q 001991 274 PSRTLFVRNINS-NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 352 (985)
Q Consensus 274 ~srtLfVgNLP~-~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~ 352 (985)
.+++|||+|||+ ++++++|+++|++||.|..|++....+|||||+|.+.++|++|++.|+|..+.|++|.|.++.++..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 358999999999 9999999999999999999998656689999999999999999999999999999999999875421
Q ss_pred CCc-------------------------------ccccccceeeecCCCCCCHHHHHHHhhccC-CEEEEEEcCCCCcEE
Q 001991 353 PSE-------------------------------KDANQGTLVVFNLDSSVSTEELHQIFGIYG-EIREIRDTQHKHNHK 400 (985)
Q Consensus 353 ~~~-------------------------------~~~~~~tLfV~NLp~svTeedLrelFs~fG-~I~~Vri~~~skGfa 400 (985)
... ...+..+|||+|||..+++++|+++|++|| .|.+|++.++.+|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~a 161 (198)
T 1qm9_A 82 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMA 161 (198)
T ss_dssp CCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCE
T ss_pred CCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEE
Confidence 110 012367899999999999999999999999 999999988889999
Q ss_pred EEEEcCHHHHHHHHHHhCCceeC-CceEEEEeccCc
Q 001991 401 FIEFYDIRAAETALRTLNRSDVA-GKQIKLEASRPG 435 (985)
Q Consensus 401 FVeF~d~edA~kAI~~LNG~~I~-Gr~IkV~~A~~k 435 (985)
||+|.+.++|.+|++.|||..++ |++|+|.|++++
T Consensus 162 fV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 162 LIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 99999999999999999999999 999999999874
No 16
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.94 E-value=1.9e-27 Score=234.86 Aligned_cols=156 Identities=18% Similarity=0.393 Sum_probs=140.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 348 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~ 348 (985)
++++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 5789999999999999999999999999999986 577899999999999999999974 678999999999886
Q ss_pred CCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeC
Q 001991 349 PKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVA 423 (985)
Q Consensus 349 pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~ 423 (985)
++. .....++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|.+|++ ++|..++
T Consensus 80 ~~~----~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 154 (167)
T 2cjk_A 80 PRD----EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK 154 (167)
T ss_dssp CHH----HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS
T ss_pred chh----hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC
Confidence 542 2234679999999999999999999999999999998754 57899999999999999998 9999999
Q ss_pred CceEEEEeccCcc
Q 001991 424 GKQIKLEASRPGG 436 (985)
Q Consensus 424 Gr~IkV~~A~~k~ 436 (985)
|++|+|.++.++.
T Consensus 155 g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 155 DRKIEIKRAEPRH 167 (167)
T ss_dssp SSCEEEEECCCCC
T ss_pred CeEEEEeecCCCC
Confidence 9999999999863
No 17
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.94 E-value=5.2e-27 Score=237.95 Aligned_cols=161 Identities=16% Similarity=0.325 Sum_probs=143.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhccc----C-------cEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccc
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQF----G-------DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKL 342 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~f----G-------~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L 342 (985)
..++|||+|||.++|+++|+++|++| | .|..+++ ++++|||||+|.+.++|++|+ .|+|..|.|++|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 46899999999999999999999999 5 6777777 778999999999999999999 899999999999
Q ss_pred cccccCCCCCCC----------------cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCC-----CcEEE
Q 001991 343 DIHYSIPKDNPS----------------EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHK-----HNHKF 401 (985)
Q Consensus 343 ~V~~a~pk~~~~----------------~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~s-----kGfaF 401 (985)
.|.++.+..... ......++|||+|||..+++++|+++|++||.|..|++..+. +||||
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~af 160 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 160 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEE
T ss_pred EEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEE
Confidence 999987653221 112355799999999999999999999999999999987653 78999
Q ss_pred EEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcc
Q 001991 402 IEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 402 VeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~ 436 (985)
|+|.+.++|.+|++.|||..|+|++|+|.+++++.
T Consensus 161 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 161 CEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999999999999999999999999865
No 18
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.94 E-value=8.9e-27 Score=230.94 Aligned_cols=157 Identities=18% Similarity=0.384 Sum_probs=138.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----cc--ccceEEEEEeCCHHHHHHHHHHccCcccc---ccccc
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----AC--KHRGFVMISYYDIRAARNAMKALQNKPLR---RRKLD 343 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tg--ksrGfAFV~F~d~esA~kAi~~Lng~~I~---Gr~L~ 343 (985)
+.++|||+|||+++|+++|+++|++||+|..|++ ++ +++|||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4689999999999999999999999999999976 22 78999999999999999999999998776 56777
Q ss_pred ccccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCC
Q 001991 344 IHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNR 419 (985)
Q Consensus 344 V~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG 419 (985)
+.++.+... .....++|||+|||..+|+++|+++|++||.|.+|++..+ ++|||||+|.+.++|.+|++.|||
T Consensus 82 ~~~~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 82 MKPADSEKN---NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp EEECGGGCC---SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred Ecccccccc---ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 777655433 2345679999999999999999999999999999998755 468999999999999999999999
Q ss_pred ceeC---CceEEEEecc
Q 001991 420 SDVA---GKQIKLEASR 433 (985)
Q Consensus 420 ~~I~---Gr~IkV~~A~ 433 (985)
..+. |++|+|.||.
T Consensus 159 ~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 159 AQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SCCCTTCSSCCEEEECC
T ss_pred CcccCCCCCCeEEEecC
Confidence 8776 4999999973
No 19
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.94 E-value=8.6e-27 Score=242.73 Aligned_cols=159 Identities=18% Similarity=0.208 Sum_probs=138.7
Q ss_pred CCcEEEEecCC-CCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCC
Q 001991 274 PSRTLFVRNIN-SNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 352 (985)
Q Consensus 274 ~srtLfVgNLP-~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~ 352 (985)
++++|||+||| ..+++++|+++|++||.|.+|++....+|||||+|.+.++|++|++.|||..+.|++|+|.++..+..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 57899999999 79999999999999999999998666789999999999999999999999999999999999864321
Q ss_pred CCc---------------------------------ccccccceeeecCCCCCCHHHHHHHhhccCCE--EEEEEcCC--
Q 001991 353 PSE---------------------------------KDANQGTLVVFNLDSSVSTEELHQIFGIYGEI--REIRDTQH-- 395 (985)
Q Consensus 353 ~~~---------------------------------~~~~~~tLfV~NLp~svTeedLrelFs~fG~I--~~Vri~~~-- 395 (985)
.+. ...+..+|||+|||.++|+++|+++|++||.| .+|++..+
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~ 162 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS 162 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC
Confidence 000 00234579999999999999999999999999 88998765
Q ss_pred -CCcEEEEEEcCHHHHHHHHHHhCCceeCCc----eEEEEec
Q 001991 396 -KHNHKFIEFYDIRAAETALRTLNRSDVAGK----QIKLEAS 432 (985)
Q Consensus 396 -skGfaFVeF~d~edA~kAI~~LNG~~I~Gr----~IkV~~A 432 (985)
++|+|||+|.+.++|.+||..|||..|.|+ ++.|.++
T Consensus 163 ~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 163 ERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 358999999999999999999999999886 5666664
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.92 E-value=6.2e-25 Score=235.45 Aligned_cols=156 Identities=24% Similarity=0.359 Sum_probs=141.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 350 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk 350 (985)
...+.++|||+|||+++|+++|+++|++||.|..|++ .+++|||||+|.+.++|++|++.|+|..|.|+.|.|.++.+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~- 95 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI-NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH- 95 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC-
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc-
Confidence 3456789999999999999999999999999999998 67799999999999999999999999999999999999863
Q ss_pred CCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCC-ceeC--
Q 001991 351 DNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNR-SDVA-- 423 (985)
Q Consensus 351 ~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG-~~I~-- 423 (985)
..+|||+|||..+|+++|+++|++||.|..|++..+ ++|||||+|.+.++|.+|+..||+ ..+.
T Consensus 96 ---------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 166 (261)
T 3sde_A 96 ---------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTT 166 (261)
T ss_dssp ---------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSS
T ss_pred ---------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecC
Confidence 468999999999999999999999999999988654 578999999999999999999954 4554
Q ss_pred -CceEEEEeccCcch
Q 001991 424 -GKQIKLEASRPGGA 437 (985)
Q Consensus 424 -Gr~IkV~~A~~k~~ 437 (985)
+++|.|.++.+...
T Consensus 167 ~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 167 TPRPVIVEPMEQFDD 181 (261)
T ss_dssp SCCBCEEEECCCEES
T ss_pred CCceEEEeeccccCc
Confidence 99999999987653
No 21
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=2.9e-19 Score=176.01 Aligned_cols=127 Identities=20% Similarity=0.273 Sum_probs=114.0
Q ss_pred cccceEEEEEeCCHHHHHHHHHHc-cCcccccccccccccCCCC------------CCCcccccccceeeecCCCCCCHH
Q 001991 309 CKHRGFVMISYYDIRAARNAMKAL-QNKPLRRRKLDIHYSIPKD------------NPSEKDANQGTLVVFNLDSSVSTE 375 (985)
Q Consensus 309 gksrGfAFV~F~d~esA~kAi~~L-ng~~I~Gr~L~V~~a~pk~------------~~~~~~~~~~tLfV~NLp~svTee 375 (985)
.+.+|+++|+|.+.++|++|++.+ ||..+.| .+.+.++..+. .........++|||+|||..++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 456899999999999999999999 9999999 99999886531 112234456799999999999999
Q ss_pred HHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcc
Q 001991 376 ELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 376 dLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~ 436 (985)
+|+++|++||.|.+|+++.+++|||||+|.+.++|.+|++.|||..|.|++|+|.+++++.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999998889999999999999999999999999999999999998753
No 22
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.79 E-value=5.5e-20 Score=191.13 Aligned_cols=165 Identities=13% Similarity=0.225 Sum_probs=125.2
Q ss_pred CCcccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhh
Q 001991 145 SLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLED 223 (985)
Q Consensus 145 sl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~ff~t~Edaee 223 (985)
....|||+||+. ++++.|.+. |+...++....+ . .|..++.++|||||. |.+.++++
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~--------------F~~~G~I~~v~i---~---~d~~tg~~~G~afV~-F~~~~~A~- 71 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEK--------------FSPAGPILSIRV---C---RDMITRRSLGYAYVN-FQQPADAE- 71 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHH--------------HGGGSCEEEEEE---E---ECTTTCCEEEEEEEE-ESSHHHHH-
T ss_pred CCcEEEEeCCCCCCCHHHHHHH--------------HHhhCCEEEEEE---e---cccCCCCccccccce-eCCHHHHH-
Confidence 345799999998 888888888 844433322111 1 223478899999999 56888888
Q ss_pred hHHHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEE
Q 001991 224 FDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIR 303 (985)
Q Consensus 224 ~~ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~ 303 (985)
+|+..++|..+.+ +.+.+..... .........++|||+|||.++|+++|+++|++||.|.
T Consensus 72 -~Ai~~~~~~~~~g-~~i~~~~~~~------------------~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~ 131 (213)
T 4f02_A 72 -RALDTMNFDVIKG-KPVRIMWSQR------------------DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNIL 131 (213)
T ss_dssp -HHHHHHTTCEETT-EECEEEECCC------------------CTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEE
T ss_pred -HHHHHhhhhhcCC-cccccccccc------------------cccccccccccceECCcccccHHHHHHHHHhhcCCeE
Confidence 8999999998873 3221111000 0001122457899999999999999999999999999
Q ss_pred EEEe---ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCC
Q 001991 304 TIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 351 (985)
Q Consensus 304 sVki---tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~ 351 (985)
.|++ .+.++|||||+|.+.++|++|++.|||..|.|++|.|.++.++.
T Consensus 132 ~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 132 SCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp EEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred EEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 9976 45579999999999999999999999999999999999998754
No 23
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.79 E-value=7.9e-20 Score=182.11 Aligned_cols=162 Identities=19% Similarity=0.266 Sum_probs=125.7
Q ss_pred CCcccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhh
Q 001991 145 SLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLED 223 (985)
Q Consensus 145 sl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~ff~t~Edaee 223 (985)
.-..|||+||+. ++.+.|.+. |..+.++ .+.++. +..++.++|||||. |.+.++|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~--------------f~~~g~~----~~~~~~---~~~~~~~~g~afV~-f~~~~~a~- 68 (175)
T 1fje_B 12 TPFNLFIGNLNPNKSVAELKVA--------------ISELFAK----NDLAVV---DVRTGTNRKFGYVD-FESAEDLE- 68 (175)
T ss_dssp SSEEEEEECCCTTSCHHHHHHH--------------HHHHHHH----HTCCCC---EEEEETTTTEEEEE-ESSHHHHH-
T ss_pred CCcEEEEeCCCCCCCHHHHHHH--------------HHHhCCc----ceEEEE---ECCCCccccEEEEE-ECCHHHHH-
Confidence 345799999998 788778776 6333322 121121 22478899999999 56788878
Q ss_pred hHHHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEE
Q 001991 224 FDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIR 303 (985)
Q Consensus 224 ~~ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~ 303 (985)
+|+ .++|..+. +..+.+..... .......+.++|||+|||.++++++|+++|++||.|.
T Consensus 69 -~A~-~l~g~~~~-g~~l~v~~~~~------------------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~ 127 (175)
T 1fje_B 69 -KAL-ELTGLKVF-GNEIKLEKPKG------------------RDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIR 127 (175)
T ss_dssp -HHH-HGGGEEET-TEEEEEECCCC------------------SSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEE
T ss_pred -HHH-hcCCCEeC-CeEEEEecCCC------------------ccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEE
Confidence 788 49999998 44433322111 0112345679999999999999999999999999999
Q ss_pred EEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001991 304 TIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 350 (985)
Q Consensus 304 sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk 350 (985)
.+..++.++|||||+|.+.++|.+|++.|+|..|.|++|.|.|+.++
T Consensus 128 ~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 128 LVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp EECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred EecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 99557889999999999999999999999999999999999999876
No 24
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.79 E-value=1.7e-19 Score=182.63 Aligned_cols=182 Identities=14% Similarity=0.175 Sum_probs=127.3
Q ss_pred cccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCc-CC--ChhhhhccCCCCeeeeecCCChhhhh
Q 001991 147 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNL-LP--DEDDLFSGVTDDMGHNFQANTVDDLE 222 (985)
Q Consensus 147 ~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnI-Lp--dedDL~sG~SkGfGFV~ff~t~Edae 222 (985)
..|||+||+. ++.+.|.+. |+...++ .|-+ .+ .-.++..+.++|||||+ |.+.++|+
T Consensus 5 ~~l~V~nLp~~~te~~l~~~--------------F~~~g~i----~g~~~~~~~~v~~~~~~~~~g~afV~-F~~~~~A~ 65 (198)
T 2yh0_A 5 RRLYVGNIPFGITEEAMMDF--------------FNAQMRL----GGLTQAPGNPVLAVQINQDKNFAFLE-FRSVDETT 65 (198)
T ss_dssp CEEEEESCCTTCCHHHHHHH--------------HHHHHHH----HTCCSSSSCSEEEEEEETTTTEEEEE-ESCSHHHH
T ss_pred eEEEEcCCCCCCCHHHHHHH--------------HHHHHhh----cccccCCCCceEEeEecCCCCEEEEE-eCCHHHHH
Confidence 4799999998 888888877 7333211 0200 01 11233356789999999 55777777
Q ss_pred hhHHHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCc-CCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCc
Q 001991 223 DFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSV-VGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGD 301 (985)
Q Consensus 223 e~~ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~-~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~ 301 (985)
+|+ .++|..|. +..+.+............ ........ .........+.++|||+|||.++++++|+++|++||.
T Consensus 66 --~Al-~l~g~~~~-g~~i~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~ 140 (198)
T 2yh0_A 66 --QAM-AFDGIIFQ-GQSLKIRRPHDYQPLPGM-SENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGP 140 (198)
T ss_dssp --HHG-GGTTEEET-TEEEEEECCCCCCCCCCS-SSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSC
T ss_pred --HHH-HhcCCEEc-CceEEEeCCCCCCCCCCC-cCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCC
Confidence 788 78999997 444444332221000000 00000000 0011223467799999999999999999999999999
Q ss_pred EEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCC
Q 001991 302 IRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 352 (985)
Q Consensus 302 I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~ 352 (985)
|..|++ ++.++|||||+|.+.++|.+|++.|+|..|.|+.|.|.++.++..
T Consensus 141 v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 141 LKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred ccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999876 566799999999999999999999999999999999999987654
No 25
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.9e-19 Score=176.28 Aligned_cols=158 Identities=20% Similarity=0.283 Sum_probs=122.6
Q ss_pred ccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhHH
Q 001991 148 DIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFDL 226 (985)
Q Consensus 148 ~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~ff~t~Edaee~~a 226 (985)
.|||+||+. ++.+.|.+. |+...++..-.+ +.+. .+.++|||||. |.+.++|+ .|
T Consensus 2 ~l~V~nlp~~~t~~~l~~~--------------f~~~G~i~~v~i---~~~~----~~~~~g~afV~-f~~~~~a~--~A 57 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQY--------------FQVGGPIANIKI---MIDK----NNKNVNYAFVE-YHQSHDAN--IA 57 (166)
T ss_dssp EEEEEEEETTCCHHHHHHH--------------HGGGSCEEEEEE---ECCC----C-CCEEEEEEE-ESSHHHHH--HH
T ss_pred EEEECCCCCcCCHHHHHHH--------------HHhcCCeEEEEE---EECC----CCCCCCEEEEE-eCCHHHHH--HH
Confidence 489999988 888888877 744443322111 1132 46689999999 55788878 89
Q ss_pred HhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEE
Q 001991 227 FSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY 306 (985)
Q Consensus 227 i~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVk 306 (985)
+..++|..+. +..+.+..... .......+.++|||+|||.++++++|+++|++||.|..++
T Consensus 58 ~~~l~~~~~~-g~~i~v~~~~~------------------~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~ 118 (166)
T 3md3_A 58 LQTLNGKQIE-NNIVKINWAFQ------------------SQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGH 118 (166)
T ss_dssp HHHHTTCEET-TEECEEEECCC------------------CCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEE
T ss_pred HHHcCCCccC-CCeeEEEEcCC------------------CCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEE
Confidence 9999999997 44332222111 1112445678999999999999999999999999999987
Q ss_pred e-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001991 307 T-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 348 (985)
Q Consensus 307 i-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~ 348 (985)
+ ++.++|||||+|.+.++|.+|++.|+|..+.|++|.|.|+.
T Consensus 119 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 119 VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp EEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred EEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 6 46789999999999999999999999999999999999985
No 26
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=1.7e-19 Score=182.39 Aligned_cols=170 Identities=17% Similarity=0.328 Sum_probs=119.8
Q ss_pred CCcccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhh
Q 001991 145 SLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLED 223 (985)
Q Consensus 145 sl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~ff~t~Edaee 223 (985)
....|||+||+. ++.+.|.+. |+.+.++....+ +.+ ..+|.++|||||. |.+.++|+
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~--------------F~~~G~i~~v~i---~~~---~~~g~~~g~afV~-f~~~~~A~- 69 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSH--------------FEQWGTLTDCVV---MRD---PNTKRSRGFGFVT-YATVEEVD- 69 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHH--------------HGGGSCEEEEEE---EEC---TTTCCEEEEEEEE-ESSHHHHH-
T ss_pred CCCEEEEeCCCCCCCHHHHHHH--------------HHhCCCEEEEEE---EEc---CCCCCccceEEEE-eCCHHHHH-
Confidence 345799999998 888888887 844433322111 112 2367899999999 55778878
Q ss_pred hHHHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEE
Q 001991 224 FDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIR 303 (985)
Q Consensus 224 ~~ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~ 303 (985)
+|+.. +|..+. +..+.+...... .....+....+.++|||+|||.++|+++|+++|++||.|.
T Consensus 70 -~A~~~-~~~~~~-g~~l~v~~~~~~--------------~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~ 132 (196)
T 1l3k_A 70 -AAMNA-RPHKVD-GRVVEPKRAVSR--------------EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132 (196)
T ss_dssp -HHHHT-CSCEET-TEECEEEECCC-------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEE
T ss_pred -HHHhc-CCCEEC-CEEeeeecccCc--------------ccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeE
Confidence 78876 778887 443333222110 0011122345669999999999999999999999999999
Q ss_pred EEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCC
Q 001991 304 TIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPS 354 (985)
Q Consensus 304 sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~~~ 354 (985)
.|++ +++++|||||+|.+.++|.+|++. ++..|.|+.|.|.++.++....
T Consensus 133 ~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 133 VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC------
T ss_pred EEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHhc
Confidence 9876 467899999999999999999975 8999999999999999886653
No 27
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.77 E-value=4.2e-19 Score=174.87 Aligned_cols=158 Identities=17% Similarity=0.258 Sum_probs=122.2
Q ss_pred CcccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhh
Q 001991 146 LSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDF 224 (985)
Q Consensus 146 l~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~ff~t~Edaee~ 224 (985)
-..||++||+. ++.+.|.+. |+...++....+ . .+..++.++|||||. |.+.++|+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~--------------f~~~G~i~~v~i---~---~~~~~~~~~g~afV~-f~~~~~A~-- 59 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYAL--------------FRAIGPINTCRI---M---RDYKTGYSYGYAFVD-FTSEMDSQ-- 59 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHH--------------HHTTSCEEEEEC---C---EETTTTEECSEEEEE-ESSHHHHH--
T ss_pred ccEEEEeCCCCCCCHHHHHHH--------------HHhcCCeeEEEE---E---EeCCCCccceEEEEE-ECCHHHHH--
Confidence 35799999998 888888887 744333322111 1 122367799999999 55888888
Q ss_pred HHHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEE
Q 001991 225 DLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT 304 (985)
Q Consensus 225 ~ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~s 304 (985)
+|+..++|..+. +..+.+..... .....+.++|||+|||.++++++|+++|++||.|..
T Consensus 60 ~a~~~l~~~~~~-g~~l~v~~~~~--------------------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~ 118 (168)
T 1b7f_A 60 RAIKVLNGITVR-NKRLKVSYARP--------------------GGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQ 118 (168)
T ss_dssp HHHHHHTTCEET-TEECEEEECCC--------------------CSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEE
T ss_pred HHHHhcCCCEeC-CcEEEEEecCC--------------------CcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEE
Confidence 899889999997 44332222110 112346789999999999999999999999999999
Q ss_pred EEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccc--cccccccc
Q 001991 305 IYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYS 347 (985)
Q Consensus 305 Vki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~G--r~L~V~~a 347 (985)
+++ +++++|||||+|.+.++|.+|++.|+|..+.| ++|.|.||
T Consensus 119 ~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 119 KNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 876 56678999999999999999999999999988 99999875
No 28
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.76 E-value=4.8e-18 Score=168.11 Aligned_cols=130 Identities=18% Similarity=0.273 Sum_probs=103.5
Q ss_pred ccccceEEEEEeCCHHHHHHHHHHccCccccc-------ccccccccCCCCC--CCcccccccceeeecCCCCCCHHHHH
Q 001991 308 ACKHRGFVMISYYDIRAARNAMKALQNKPLRR-------RKLDIHYSIPKDN--PSEKDANQGTLVVFNLDSSVSTEELH 378 (985)
Q Consensus 308 tgksrGfAFV~F~d~esA~kAi~~Lng~~I~G-------r~L~V~~a~pk~~--~~~~~~~~~tLfV~NLp~svTeedLr 378 (985)
..+++|||||+|.+.++|++|++.+++..... ............. .........+|||+|||..+++++|+
T Consensus 9 ~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 88 (158)
T 2kn4_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLR 88 (158)
T ss_dssp CSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHH
T ss_pred CccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHH
Confidence 34689999999999999999999887643222 2222222111111 11223456799999999999999999
Q ss_pred HHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcch
Q 001991 379 QIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 437 (985)
Q Consensus 379 elFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~~ 437 (985)
++|++||.|..|++..+ ++|||||+|.+.++|++|++.|||..|.|++|+|.+++++..
T Consensus 89 ~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 89 RVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp HHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred HHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 99999999999998754 678999999999999999999999999999999999987653
No 29
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.76 E-value=4.1e-19 Score=182.21 Aligned_cols=174 Identities=13% Similarity=0.254 Sum_probs=127.0
Q ss_pred cccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhH
Q 001991 147 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFD 225 (985)
Q Consensus 147 ~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~ff~t~Edaee~~ 225 (985)
..|||+||+. ++.+.|.+. |+...++....+ +.+. .++.++|||||. |.+.++|+ +
T Consensus 29 ~~l~V~nLp~~~t~~~l~~~--------------f~~~G~i~~v~i---~~~~---~~g~~~g~afV~-f~~~~~A~--~ 85 (216)
T 2qfj_A 29 SRVYVGSIYYELGEDTIRQA--------------FAPFGPIKSIDM---SWDS---VTMKHKGFAFVE-YEVPEAAQ--L 85 (216)
T ss_dssp TEEEEECCCTTCCHHHHHHH--------------HGGGSCEEEEEE---CCC----CC-CCCSEEEEE-ESSHHHHH--H
T ss_pred CEEEEECCCCCCCHHHHHHH--------------HHhCCCEEEEEE---eecC---CCCccCceEEEE-eCCHHHHH--H
Confidence 4699999998 888888888 754444332221 1122 367899999999 56888888 8
Q ss_pred HHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEE
Q 001991 226 LFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI 305 (985)
Q Consensus 226 ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV 305 (985)
|+..++|..+. +..+.+........ .. .............++|||+|||.++++++|+++|++||.|..|
T Consensus 86 A~~~l~~~~~~-g~~l~v~~~~~~~~--------~~-~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v 155 (216)
T 2qfj_A 86 ALEQMNSVMLG-GRNIKVGRPSNIGQ--------AQ-PIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSA 155 (216)
T ss_dssp HHHHHSSCCCC--CCCEEECCSCCGG--------GH-HHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEE
T ss_pred HHHHccCCeeC-CeeEEEecCCCccc--------cc-hhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEE
Confidence 99989999887 44433322111000 00 0000000123466899999999999999999999999999999
Q ss_pred Ee-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCC
Q 001991 306 YT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNP 353 (985)
Q Consensus 306 ki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~~ 353 (985)
++ +++++|||||+|.+.++|.+|++.|+|..|.|+.|.|.|+.++..+
T Consensus 156 ~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 156 TLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred EEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 76 4677999999999999999999999999999999999999877544
No 30
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.76 E-value=5.4e-19 Score=175.01 Aligned_cols=158 Identities=15% Similarity=0.239 Sum_probs=120.0
Q ss_pred cccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCC---ChhhhhccCCCCeeeeecCCChhhhh
Q 001991 147 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLP---DEDDLFSGVTDDMGHNFQANTVDDLE 222 (985)
Q Consensus 147 ~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILp---dedDL~sG~SkGfGFV~ff~t~Edae 222 (985)
..|||+||+. ++.+.|.+. |+...++ .|-+.. .-.++..+.++|||||+ |.+.++|+
T Consensus 5 ~~l~V~nLp~~~t~~~l~~~--------------F~~~g~~----~g~~~~~~~~v~~~~~~~~~g~afV~-f~~~~~A~ 65 (172)
T 2g4b_A 5 RRLYVGNIPFGITEEAMMDF--------------FNAQMRL----GGLTQAPGNPVLAVQINQDKNFAFLE-FRSVDETT 65 (172)
T ss_dssp GEEEEESCCTTCCHHHHHHH--------------HHHHHHH----TTCCSSSSCSEEEEEEETTTTEEEEE-ESSHHHHH
T ss_pred cEEEEcCCCcccCHHHHHHH--------------HHHHhhh----cccccCCCCceeeeEecCCCCEEEEE-eCCHHHHH
Confidence 4799999998 888888877 7333111 121110 11233356689999999 55788878
Q ss_pred hhHHHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcE
Q 001991 223 DFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDI 302 (985)
Q Consensus 223 e~~ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I 302 (985)
.|+ .++|..+. +..+.+..... .......++|||+|||.++++++|+++|++||+|
T Consensus 66 --~A~-~~~~~~~~-g~~i~v~~~~~--------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v 121 (172)
T 2g4b_A 66 --QAM-AFDGIIFQ-GQSLKIRRPHD--------------------YQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPL 121 (172)
T ss_dssp --HHG-GGTTCEET-TEECEEECCSS--------------------CCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCE
T ss_pred --HHH-HhCCcEec-CceeeecCCcc--------------------cCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCc
Confidence 788 89999997 44332221100 1122347899999999999999999999999999
Q ss_pred EEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001991 303 RTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 347 (985)
Q Consensus 303 ~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a 347 (985)
..+++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.++
T Consensus 122 ~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 122 KAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp EEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99976 5677999999999999999999999999999999999987
No 31
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.75 E-value=2.9e-19 Score=176.13 Aligned_cols=157 Identities=17% Similarity=0.299 Sum_probs=117.6
Q ss_pred cccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhH
Q 001991 147 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFD 225 (985)
Q Consensus 147 ~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~ff~t~Edaee~~ 225 (985)
..|||+||+. ++.+.|.+. |+...++....+ ..+. .+|.++|||||. |.+.++|+ .
T Consensus 4 ~~l~v~nLp~~~t~~~l~~~--------------F~~~G~i~~v~i---~~~~---~~g~~~g~afV~-f~~~~~a~--~ 60 (167)
T 2cjk_A 4 CKMFIGGLNWDTTEDNLREY--------------FGKYGTVTDLKI---MKDP---ATGRSRGFGFLS-FEKPSSVD--E 60 (167)
T ss_dssp GEEEECSCCTTCCHHHHHHH--------------HTTTCCEEEEEC---CCCT---TTSSCCSCEEEE-ESSTHHHH--H
T ss_pred cEEEEeCCCCCCCHHHHHHH--------------HHhCCCEEEEEE---EECC---CCCCccceEEEE-EccHHHHH--H
Confidence 4799999998 888888887 744433322111 1122 378899999999 55777777 6
Q ss_pred HHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEE
Q 001991 226 LFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI 305 (985)
Q Consensus 226 ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV 305 (985)
|+.. +..+. +..+.+..... .....+.++|||+|||.++++++|+++|++||.|..+
T Consensus 61 A~~~--~~~~~-g~~i~v~~~~~--------------------~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~ 117 (167)
T 2cjk_A 61 VVKT--QHILD-GKVIDPKRAIP--------------------RDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDA 117 (167)
T ss_dssp HHHS--CCEET-TEECCCEECCC--------------------HHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEE
T ss_pred HHhc--ccccC-CeEcccccccc--------------------hhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEE
Confidence 7774 44555 22221111110 0112346799999999999999999999999999999
Q ss_pred Ee-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001991 306 YT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 350 (985)
Q Consensus 306 ki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk 350 (985)
++ ++.++|||||+|.+.++|.+|++ +++..+.|++|.|.++.|+
T Consensus 118 ~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 118 QLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp ECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred EEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 75 47789999999999999999997 9999999999999999876
No 32
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.74 E-value=2.8e-18 Score=168.21 Aligned_cols=157 Identities=19% Similarity=0.287 Sum_probs=119.7
Q ss_pred cccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhhH
Q 001991 147 SDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDFD 225 (985)
Q Consensus 147 ~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~ff~t~Edaee~~ 225 (985)
..||++||+. ++.+.|.+. |+...++....+ + .+..+|.++|||||+ |.+.++|+ .
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~--------------f~~~G~i~~v~~---~---~~~~~~~~~g~afV~-f~~~~~A~--~ 59 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSL--------------FGSIGEIESCKL---V---RDKITGQSLGYGFVN-YIDPKDAE--K 59 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHH--------------HHTTSCEEEEEE---E---ECTTTCCEEEEEEEE-ESSHHHHH--H
T ss_pred ceEEEcCCCCCCCHHHHHHH--------------HHhcCCeEEEEE---E---eCCCCCcceeEEEEE-ECCHHHHH--H
Confidence 5799999998 888888877 744433322111 1 122367789999999 56888888 8
Q ss_pred HHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEE
Q 001991 226 LFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI 305 (985)
Q Consensus 226 ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV 305 (985)
|+..++|..+. +..+.+..... .......++|||+|||.++++++|+++|++||.|..+
T Consensus 60 a~~~l~~~~~~-g~~l~v~~~~~--------------------~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~ 118 (167)
T 1fxl_A 60 AINTLNGLRLQ-TKTIKVSYARP--------------------SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 118 (167)
T ss_dssp HHHHHTTCEET-TEECEEEECCC--------------------CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEE
T ss_pred HHHHcCCCccC-CceEEEEecCC--------------------CcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEE
Confidence 99989999997 44332221110 1123456899999999999999999999999999998
Q ss_pred Ee-----ccccceEEEEEeCCHHHHHHHHHHccCccccccc--cccccc
Q 001991 306 YT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK--LDIHYS 347 (985)
Q Consensus 306 ki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~--L~V~~a 347 (985)
++ ++.++|||||+|.+.++|.+|++.|+|..+.|+. |.|.||
T Consensus 119 ~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 119 RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 76 4667999999999999999999999999999976 666664
No 33
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.74 E-value=3.7e-18 Score=161.41 Aligned_cols=103 Identities=16% Similarity=0.315 Sum_probs=72.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe---ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 350 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki---tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk 350 (985)
..++|||+|||+++|+++|+++|++||.|.+|++ .+.++|||||+|.+.++|++|++.|++..|.|++|.|.++.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 4678999999999999999999999999999976 4557899999999999999999999999999999999999876
Q ss_pred CCCCc----ccccccceeeecCCCCCCHHH
Q 001991 351 DNPSE----KDANQGTLVVFNLDSSVSTEE 376 (985)
Q Consensus 351 ~~~~~----~~~~~~tLfV~NLp~svTeed 376 (985)
..... ......+|||+|||+++|++.
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCccccc
Confidence 65422 223445899999999999863
No 34
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.73 E-value=4e-18 Score=168.68 Aligned_cols=162 Identities=13% Similarity=0.186 Sum_probs=117.8
Q ss_pred CcccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCChhhhhcc--CCCCeeeeecCCChhhhh
Q 001991 146 LSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSG--VTDDMGHNFQANTVDDLE 222 (985)
Q Consensus 146 l~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpdedDL~sG--~SkGfGFV~ff~t~Edae 222 (985)
-..|||+||+. ++.+.|.+. |+...++....+- .+. .++ .++|||||. |.+.++|+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~--------------F~~~G~i~~v~i~---~~~---~~~~~~~~g~afV~-f~~~~~A~ 61 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLREL--------------FEQYGAVYEINVL---RDR---SQNPPQSKGCCFVT-FYTRKAAL 61 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHH--------------HHTTSCEEEEEEE---EEC---SSSSCEEEEEEEEE-ESSHHHHH
T ss_pred ceEEEEeCCCCCCCHHHHHHH--------------HHhCCCEEEEEEE---ecC---CCCCCCcceEEEEE-ECCHHHHH
Confidence 35799999998 888888887 7443333211110 111 133 689999999 56788878
Q ss_pred hhHHHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcE
Q 001991 223 DFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDI 302 (985)
Q Consensus 223 e~~ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I 302 (985)
+|+..++|..+..... +.+. ..... .......+.++|||+|||.++|+++|+++|++||.|
T Consensus 62 --~A~~~l~~~~~~~~~~----~~~~----------~~~~~---~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i 122 (175)
T 3nmr_A 62 --EAQNALHNMKVLPGMH----HPIQ----------MKPAD---SEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQI 122 (175)
T ss_dssp --HHHHHHTTTCCCTTCS----SCCE----------EEECG---GGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCE
T ss_pred --HHHHHhcCcEEccCCc----cceE----------Ecccc---ccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCE
Confidence 7898888877652211 1000 00000 111233467899999999999999999999999999
Q ss_pred EEEEe----ccccceEEEEEeCCHHHHHHHHHHccCcccc---ccccccccc
Q 001991 303 RTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLR---RRKLDIHYS 347 (985)
Q Consensus 303 ~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~---Gr~L~V~~a 347 (985)
..+++ +++++|||||+|.+.++|.+|++.|||..+. +++|.|.|+
T Consensus 123 ~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 123 EECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp EEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred EEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 99976 4667999999999999999999999998776 499999987
No 35
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.72 E-value=7.7e-18 Score=180.97 Aligned_cols=77 Identities=19% Similarity=0.343 Sum_probs=71.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccc-cccccccccC
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR-RRKLDIHYSI 348 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~-Gr~L~V~~a~ 348 (985)
..+.++|||+|||.++++++|+++|++||.|..|++....+|||||+|.+.++|.+|++.|||..|. |+.|.|.|++
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 3467899999999999999999999999999999985555799999999999999999999999999 9999999985
No 36
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.71 E-value=1.2e-17 Score=158.01 Aligned_cols=104 Identities=17% Similarity=0.241 Sum_probs=72.9
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC---CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcc
Q 001991 360 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH---KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 360 ~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~---skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~ 436 (985)
..+|||+|||.++|+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|++.|||..|.|++|+|.+++++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 568999999999999999999999999999998754 47899999999999999999999999999999999999876
Q ss_pred hhhhhhhhhhhccCCCcc-cCCCCCCCcc
Q 001991 437 ARRFMVQSEQEQDDLNLC-QIPFDDLSSG 464 (985)
Q Consensus 437 ~Rrl~qq~eq~q~e~nLy-kNlp~svt~e 464 (985)
.+. .+.....+...+|| +|||+++|++
T Consensus 85 ~~~-~~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 85 ERE-AELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp C----------------------------
T ss_pred ccc-cccccccCCCCceEeCCCCCCcccc
Confidence 554 11223334456899 9999999876
No 37
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.71 E-value=1.1e-17 Score=174.20 Aligned_cols=172 Identities=8% Similarity=0.067 Sum_probs=118.4
Q ss_pred cccccccCC-C-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhh
Q 001991 147 SDIFTRKMK-L-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDF 224 (985)
Q Consensus 147 ~~lFv~nL~-~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~ff~t~Edaee~ 224 (985)
..|||+||+ . ++.+.|++. | ..+|+|+... +.. .++|||||+ |.+.++|+
T Consensus 5 ~~l~V~nL~~~~~~~~~L~~~--------------F--------~~~G~v~~v~--i~~-~~~g~afV~-f~~~~~A~-- 56 (205)
T 3tyt_A 5 PVLMVYGLDQSKMNCDRVFNV--------------F--------CLYGNVEKVK--FMK-SKPGAAMVE-MADGYAVD-- 56 (205)
T ss_dssp SEEEEECCCTTTCCHHHHHHH--------------H--------TTTSCEEEEE--ECT-TSTTCEEEE-ESSHHHHH--
T ss_pred CEEEEeCCCcccCCHHHHHHH--------------H--------HhcCCeEEEE--Eec-CCCCEEEEE-ECCHHHHH--
Confidence 579999999 6 888889988 8 4455554411 000 158999999 56788888
Q ss_pred HHHhccCCeeEcCCcchhhhcccccc--cCCC----------CCCCCCC-CCcC----CCCCCCCCCCcEEEEecCCCCC
Q 001991 225 DLFSSGGGMELEGDDRLFAVQKNSDF--VGGV----------SNQGVSA-GSVV----GEHPYGEHPSRTLFVRNINSNV 287 (985)
Q Consensus 225 ~ai~~~nG~eLegd~~~~vg~~ls~l--~k~~----------~n~~~~~-~~~~----~e~~~~e~~srtLfVgNLP~~v 287 (985)
+|+..++|.+|. ++.+.+....... .+.. +...... .... ........++++|||+|||+++
T Consensus 57 ~Ai~~lng~~~~-g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~ 135 (205)
T 3tyt_A 57 RAITHLNNNFMF-GQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEV 135 (205)
T ss_dssp HHHHHHTTCEET-TEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTC
T ss_pred HHHHHhCCCEEC-CceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCC
Confidence 899999999998 4544443322110 0000 0000000 0000 0000113467899999999999
Q ss_pred CHHHHHHhhcccCcE--EEEEe---ccccceEEEEEeCCHHHHHHHHHHccCcccccc----ccccccc
Q 001991 288 EDSELKALFEQFGDI--RTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRR----KLDIHYS 347 (985)
Q Consensus 288 TEedLrelFs~fG~I--~sVki---tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr----~L~V~~a 347 (985)
|+++|+++|++||.| ..+++ .+..+|||||+|.+.++|.+|+..|||..|.|+ ++.|+++
T Consensus 136 t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 136 TEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 999999999999999 78876 234569999999999999999999999999886 4555543
No 38
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.68 E-value=7.2e-17 Score=169.44 Aligned_cols=178 Identities=18% Similarity=0.173 Sum_probs=124.5
Q ss_pred CCCcccccccCCC--CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhh
Q 001991 144 SSLSDIFTRKMKL--SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDL 221 (985)
Q Consensus 144 Ssl~~lFv~nL~~--~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~ff~t~Eda 221 (985)
.....|||+||+. ++.+.|.+. |+ .+|.|.... +... .+|||||+ |.+.++|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~--------------F~--------~~G~i~~v~--i~~~-~~g~afV~-F~~~~~A 85 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFIL--------------FG--------VYGDVQRVK--ILFN-KKENALVQ-MADGNQA 85 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHH--------------HH--------HHTCEEEEE--ECCT-TSCCEEEE-ESCHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHH--------------HH--------hCCCeEEEE--EEEC-CCCEEEEE-ECCHHHH
Confidence 4456799999985 777778877 73 344333310 0000 27899999 5588888
Q ss_pred hhhHHHhccCCeeEcCCcchhhhccccccc---CCCCC-------CCCCCC-Cc----CCCCCCCCCCCcEEEEecCCCC
Q 001991 222 EDFDLFSSGGGMELEGDDRLFAVQKNSDFV---GGVSN-------QGVSAG-SV----VGEHPYGEHPSRTLFVRNINSN 286 (985)
Q Consensus 222 ee~~ai~~~nG~eLegd~~~~vg~~ls~l~---k~~~n-------~~~~~~-~~----~~e~~~~e~~srtLfVgNLP~~ 286 (985)
+ +|+..++|..+. +..+.+........ +.... ...... .. .........+.++|||+|||.+
T Consensus 86 ~--~Ai~~l~g~~~~-g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~ 162 (229)
T 2adc_A 86 Q--LAMSHLNGHKLH-GKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPS 162 (229)
T ss_dssp H--HHHHHHTTCBCS-SSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTT
T ss_pred H--HHHHHhCCCeEC-CeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCcc
Confidence 8 899999999997 44444433221100 00000 000000 00 0000112345799999999999
Q ss_pred CCHHHHHHhhcccC-cEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccc-cccccccccCCC
Q 001991 287 VEDSELKALFEQFG-DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR-RRKLDIHYSIPK 350 (985)
Q Consensus 287 vTEedLrelFs~fG-~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~-Gr~L~V~~a~pk 350 (985)
+++++|+++|++|| .|..|++..+.+|||||+|.+.++|.+|++.|+|..+. |++|.|.|+.++
T Consensus 163 ~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 163 VSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 99999999999999 99999985667999999999999999999999999999 999999999764
No 39
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.67 E-value=1.2e-16 Score=162.78 Aligned_cols=175 Identities=18% Similarity=0.184 Sum_probs=122.9
Q ss_pred cccccccCCC--CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhhhh
Q 001991 147 SDIFTRKMKL--SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLEDF 224 (985)
Q Consensus 147 ~~lFv~nL~~--~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~ff~t~Edaee~ 224 (985)
..||++||+. ++.+.|.+. | ..+|.|.... +... .+|||||+ |.+.++|+
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~--------------F--------~~~G~i~~v~--i~~~-~~g~afV~-f~~~~~a~-- 55 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFIL--------------F--------GVYGDVQRVK--ILFN-KKENALVQ-MADGNQAQ-- 55 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHH--------------H--------HTTCCCSEEE--CSTT-CSSCCEEE-CTTTHHHH--
T ss_pred cEEEEeCCCcccCCHHHHHHH--------------H--------HhcCCEEEEE--EEeC-CCCEEEEE-ECCHHHHH--
Confidence 4799999985 677778877 7 4455444311 0000 27899999 55777778
Q ss_pred HHHhccCCeeEcCCcchhhhccccccc---CCCCC-------CCCCC-CCc----CCCCCCCCCCCcEEEEecCCCCCCH
Q 001991 225 DLFSSGGGMELEGDDRLFAVQKNSDFV---GGVSN-------QGVSA-GSV----VGEHPYGEHPSRTLFVRNINSNVED 289 (985)
Q Consensus 225 ~ai~~~nG~eLegd~~~~vg~~ls~l~---k~~~n-------~~~~~-~~~----~~e~~~~e~~srtLfVgNLP~~vTE 289 (985)
.|+..++|..+. +..+.+........ +.... ..... ... .........++++|||+|||..+++
T Consensus 56 ~A~~~l~~~~~~-g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~ 134 (198)
T 1qm9_A 56 LAMSHLNGHKLH-GKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSE 134 (198)
T ss_dssp HHHHHHTTCCCS-SCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCH
T ss_pred HHHHHhCCCeec-CeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCH
Confidence 799889999887 44444432221100 00000 00000 000 0000112346899999999999999
Q ss_pred HHHHHhhcccC-cEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccc-cccccccccCCC
Q 001991 290 SELKALFEQFG-DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR-RRKLDIHYSIPK 350 (985)
Q Consensus 290 edLrelFs~fG-~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~-Gr~L~V~~a~pk 350 (985)
++|+++|++|| .|..+++....+|||||+|.+.++|.+|++.|+|..+. |++|.|.|+.++
T Consensus 135 ~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 135 EDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred HHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 99999999999 99999986667999999999999999999999999999 999999998764
No 40
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.66 E-value=1.4e-16 Score=170.55 Aligned_cols=153 Identities=18% Similarity=0.177 Sum_probs=119.7
Q ss_pred CCCcccccccCCC-CCcccccccCcccccCCCCCCCCCcccccceeeEecCcCCChhhhhccCCCCeeeeecCCChhhhh
Q 001991 144 SSLSDIFTRKMKL-SGNEILSRQPLNAVASHHQPEEPFESLKEIEAQTIGNLLPDEDDLFSGVTDDMGHNFQANTVDDLE 222 (985)
Q Consensus 144 Ssl~~lFv~nL~~-~dn~~L~~~~~d~~~~~~~~~E~F~s~EEie~~~iGnILpdedDL~sG~SkGfGFV~ff~t~Edae 222 (985)
..-..|||+||+. ++.+.|.+. |.. +|.|... .-..++|||||. |.+.++|+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~--------------F~~--------~G~i~~v----~i~~~kg~afV~-f~~~~~A~ 72 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRL--------------FER--------YGEPSEV----FINRDRGFGFIR-LESRTLAE 72 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHH--------------TGG--------GCCCSEE----EEETTTTEEEEE-CSSHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHH--------------HHh--------cCCEEEE----EEeCCCcEEEEE-ECCHHHHH
Confidence 4445799999998 888888888 843 4433321 123468999999 56888888
Q ss_pred hhHHHhccCCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcE
Q 001991 223 DFDLFSSGGGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNINSNVEDSELKALFEQFGDI 302 (985)
Q Consensus 223 e~~ai~~~nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I 302 (985)
+|+..++|..+. +..+.+.. ..+.++|||+|||..+|+++|+++|++||.|
T Consensus 73 --~A~~~l~g~~i~-g~~l~v~~--------------------------a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i 123 (261)
T 3sde_A 73 --IAKAELDGTILK-SRPLRIRF--------------------------ATHGAALTVKNLSPVVSNELLEQAFSQFGPV 123 (261)
T ss_dssp --HHHHHHTTCEET-TEECEEEE--------------------------CCCSSEEEEESCCTTCCHHHHHHHHGGGSCE
T ss_pred --HHHHHcCCcEEC-CceeEeee--------------------------cccCCcccccCCCCCCCHHHHHHHHHhcCCe
Confidence 899999999997 33322211 1236799999999999999999999999999
Q ss_pred EEEEe----ccccceEEEEEeCCHHHHHHHHHHccCcc-cc---cccccccccCCCCC
Q 001991 303 RTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKP-LR---RRKLDIHYSIPKDN 352 (985)
Q Consensus 303 ~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~-I~---Gr~L~V~~a~pk~~ 352 (985)
..|++ +++++|||||+|.+.++|.+|++.|++.. +. +++|.|.++.+...
T Consensus 124 ~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 124 EKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp EEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEES
T ss_pred EEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccCc
Confidence 99876 57789999999999999999999996544 33 89999999876543
No 41
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.62 E-value=1.5e-15 Score=150.13 Aligned_cols=83 Identities=25% Similarity=0.464 Sum_probs=76.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
.....++|||+|||+++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|||..|.|++|.|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456799999999999999999999999999999986 57789999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 001991 346 YSIPKDNP 353 (985)
Q Consensus 346 ~a~pk~~~ 353 (985)
++.++...
T Consensus 146 ~a~~~~~~ 153 (158)
T 2kn4_A 146 MARYGRPP 153 (158)
T ss_dssp EECCSSCC
T ss_pred ECCCCCCC
Confidence 99876544
No 42
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.60 E-value=6.2e-16 Score=145.15 Aligned_cols=103 Identities=26% Similarity=0.407 Sum_probs=92.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe--ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 349 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki--tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~p 349 (985)
..+.++|||+|||.++++++|+++|++||.|..|.+ ++..+|||||+|.+.++|++|++.|||..+.|+.|.|.++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 456799999999999999999999999999999987 567799999999999999999999999999999999999975
Q ss_pred CCCCCcccccccceeeecCCCCCCHHHHHHHhhccCC
Q 001991 350 KDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGE 386 (985)
Q Consensus 350 k~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~ 386 (985)
+... .+++...++++|.++|++||.
T Consensus 85 ~~~~------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRAF------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHT------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred Chhh------------hhhhHhHhHHHHHHHHHHhCC
Confidence 4322 567788899999999999984
No 43
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=140.29 Aligned_cols=76 Identities=22% Similarity=0.489 Sum_probs=71.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 348 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~ 348 (985)
..++|||+|||+++|+++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|||..|.|++|+|.|++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 4578999999999999999999999999999976 57889999999999999999999999999999999999997
Q ss_pred C
Q 001991 349 P 349 (985)
Q Consensus 349 p 349 (985)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 44
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.60 E-value=1.7e-15 Score=140.01 Aligned_cols=76 Identities=26% Similarity=0.441 Sum_probs=70.8
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecc
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 433 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~ 433 (985)
..++|||+|||.++|+++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..|.|++|+|+||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 3468999999999999999999999999999998643 46899999999999999999999999999999999998
Q ss_pred C
Q 001991 434 P 434 (985)
Q Consensus 434 ~ 434 (985)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 45
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.59 E-value=2e-15 Score=148.48 Aligned_cols=138 Identities=18% Similarity=0.243 Sum_probs=103.1
Q ss_pred CCCCeeeeecCCChhhhhhhHHHhcc-CCeeEcCCcchhhhcccccccCCCCCCCCCCCCcCCCCCCCCCCCcEEEEecC
Q 001991 205 VTDDMGHNFQANTVDDLEDFDLFSSG-GGMELEGDDRLFAVQKNSDFVGGVSNQGVSAGSVVGEHPYGEHPSRTLFVRNI 283 (985)
Q Consensus 205 ~SkGfGFV~ff~t~Edaee~~ai~~~-nG~eLegd~~~~vg~~ls~l~k~~~n~~~~~~~~~~e~~~~e~~srtLfVgNL 283 (985)
..+|+++|+ +.+.++|+ +++..+ +|.+++| .+.+......... .................+.++|||+||
T Consensus 11 ~l~G~~~ve-~~~~~~A~--~a~~~~~ng~~~~G--~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~V~nl 81 (150)
T 2i2y_A 11 TLKGETTTE-AVDAATAE--KVFKQYANDNGVDG--EWTYDDATKTFTV----TEGSHHHHHHMHRDSCPLDCKVYVGNL 81 (150)
T ss_dssp SSCEEEEEE-CSSHHHHT--TTHHHHHHHHTCCC--EEEEETTTTEEEE----ECSSSSCCCCSCSSSSTTSCEEEEESC
T ss_pred cccccceee-ecCHHHHH--HHHHHHhcCCCCCC--ceecccccCcccc----ccccccccccccccCCCCCCEEEEeCC
Confidence 367899988 55777778 788877 8888875 3222221110000 000000111122334567899999999
Q ss_pred CCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCC
Q 001991 284 NSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 351 (985)
Q Consensus 284 P~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~ 351 (985)
|+++++++|+++|++||+|..|++...++|||||+|.+.++|++|++.|+|..|.|++|.|.++.++.
T Consensus 82 ~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 82 GNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999999999999999999866689999999999999999999999999999999999998753
No 46
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.58 E-value=1.2e-15 Score=148.55 Aligned_cols=121 Identities=19% Similarity=0.326 Sum_probs=77.6
Q ss_pred eEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEE
Q 001991 313 GFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD 392 (985)
Q Consensus 313 GfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri 392 (985)
-++|++|.+...+..|+..+++....|+. .+.+..+ +......++|||+|||..+++++|+++|++||.|..|++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~----~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 79 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRP----PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI 79 (135)
T ss_dssp -------------------------------CCSCCS----CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCC----CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 36888999999999999999987766653 2233322 233456789999999999999999999999999999998
Q ss_pred cCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcchh
Q 001991 393 TQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGAR 438 (985)
Q Consensus 393 ~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~~R 438 (985)
..+ .+|||||+|.+.++|++|++.|||..|.|++|+|.+++++..+
T Consensus 80 ~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 80 PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp CCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 643 5789999999999999999999999999999999999876543
No 47
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=5e-15 Score=135.82 Aligned_cols=94 Identities=22% Similarity=0.364 Sum_probs=82.2
Q ss_pred cEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCc
Q 001991 276 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSE 355 (985)
Q Consensus 276 rtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~~~~ 355 (985)
++|||+|||.++++++|+++|++||+|..|++...++|||||+|.+.++|++|++.|++..+.|++|.|.++.++.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 80 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSR 80 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCccc
Confidence 58999999999999999999999999999988444799999999999999999999999999999999999988764322
Q ss_pred c------cccccceeeecCC
Q 001991 356 K------DANQGTLVVFNLD 369 (985)
Q Consensus 356 ~------~~~~~tLfV~NLp 369 (985)
. .....+|||+||+
T Consensus 81 ~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 81 FDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSCCCSCCCCSCCCSCCCC
T ss_pred CCCCCccccCCCceecCCCC
Confidence 1 1235689999997
No 48
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.55 E-value=9.6e-15 Score=137.60 Aligned_cols=82 Identities=21% Similarity=0.287 Sum_probs=74.9
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
.+.++|||+||+..+++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34679999999999999999999999999999998643 5789999999999999999999999999999999999
Q ss_pred cCcchhh
Q 001991 433 RPGGARR 439 (985)
Q Consensus 433 ~~k~~Rr 439 (985)
..+..++
T Consensus 84 ~~~~~~~ 90 (110)
T 3s8s_A 84 IKGQQRM 90 (110)
T ss_dssp STTHHHH
T ss_pred CCCcHHH
Confidence 8776554
No 49
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.55 E-value=6.8e-15 Score=133.84 Aligned_cols=76 Identities=16% Similarity=0.158 Sum_probs=70.9
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcc
Q 001991 360 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 360 ~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~ 436 (985)
..-|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|++|++.||+..+.|++|+|.+|...+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e~~ 82 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSENE 82 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCHHH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCHHH
Confidence 56799999999999999999999999999999876 69999999999999999999999999999999999995333
No 50
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.55 E-value=7.6e-15 Score=147.07 Aligned_cols=123 Identities=17% Similarity=0.273 Sum_probs=74.0
Q ss_pred EEeCCHHHHHHHHHHccCcccc--cccccccccCCC----------------CCCCcccccccceeeecCCCCCCHHHHH
Q 001991 317 ISYYDIRAARNAMKALQNKPLR--RRKLDIHYSIPK----------------DNPSEKDANQGTLVVFNLDSSVSTEELH 378 (985)
Q Consensus 317 V~F~d~esA~kAi~~Lng~~I~--Gr~L~V~~a~pk----------------~~~~~~~~~~~tLfV~NLp~svTeedLr 378 (985)
.+|++.++|+.|+..+++.... |+.......... ...+......++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6889999999999999887655 555554432110 0011223455689999999999999999
Q ss_pred HHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcchhh
Q 001991 379 QIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGARR 439 (985)
Q Consensus 379 elFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~~Rr 439 (985)
++|++||.|..|++..+ .+|||||+|.+.++|++||+.|||..|.|++|.|.|+.++..++
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 99999999999998755 47899999999999999999999999999999999998776554
No 51
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=8.4e-15 Score=137.61 Aligned_cols=80 Identities=18% Similarity=0.212 Sum_probs=73.2
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCC--ceeCCceEEEEeccCc
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNR--SDVAGKQIKLEASRPG 435 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG--~~I~Gr~IkV~~A~~k 435 (985)
...++|||+|||+++|+++|+++|++||+|.+|+++.+ +|||||+|.+.++|++|++.|++ ..|.|++|+|.|++++
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 35679999999999999999999999999999999875 89999999999999999998864 7899999999999886
Q ss_pred chh
Q 001991 436 GAR 438 (985)
Q Consensus 436 ~~R 438 (985)
..+
T Consensus 93 ~~~ 95 (105)
T 1sjq_A 93 ELK 95 (105)
T ss_dssp SCC
T ss_pred CCC
Confidence 644
No 52
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=136.40 Aligned_cols=79 Identities=19% Similarity=0.379 Sum_probs=73.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
+.+.++|||+|||+++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 357799999999999999999999999999999976 578999999999999999999999999999999999999
Q ss_pred cCCC
Q 001991 347 SIPK 350 (985)
Q Consensus 347 a~pk 350 (985)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8644
No 53
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.54 E-value=3.8e-15 Score=135.28 Aligned_cols=79 Identities=22% Similarity=0.432 Sum_probs=71.6
Q ss_pred CcEEEEecCCCCCCHHHHHHhhcccC-cEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHcc-Cccccccccccccc
Q 001991 275 SRTLFVRNINSNVEDSELKALFEQFG-DIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQ-NKPLRRRKLDIHYS 347 (985)
Q Consensus 275 srtLfVgNLP~~vTEedLrelFs~fG-~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Ln-g~~I~Gr~L~V~~a 347 (985)
+++|||+|||+++|+++|+++|++|| +|.+|++ +++++|||||+|.+.++|++|++.++ +..+.|++|.|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57899999999999999999999999 8998875 57899999999999999999998874 56899999999999
Q ss_pred CCCCCC
Q 001991 348 IPKDNP 353 (985)
Q Consensus 348 ~pk~~~ 353 (985)
.|+...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 887654
No 54
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.54 E-value=1.8e-14 Score=134.17 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=72.2
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCce--eCCceEEEEeccCc
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSD--VAGKQIKLEASRPG 435 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~--I~Gr~IkV~~A~~k 435 (985)
.+.++|||+|||.++|+++|+++|++||.|.+|++++ .||||||+|.+.++|.+|++.||+.. |.|++|+|+|++++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 4567999999999999999999999999999999875 58999999999999999999999875 78999999999876
Q ss_pred c
Q 001991 436 G 436 (985)
Q Consensus 436 ~ 436 (985)
+
T Consensus 98 ~ 98 (100)
T 3r27_A 98 K 98 (100)
T ss_dssp C
T ss_pred c
Confidence 4
No 55
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=7.7e-15 Score=134.59 Aligned_cols=78 Identities=29% Similarity=0.441 Sum_probs=73.5
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcchh
Q 001991 361 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGAR 438 (985)
Q Consensus 361 ~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~~R 438 (985)
++|||+|||.++++++|+++|++||.|..|++..++++||||+|.+.++|++|++.|||..+.|++|+|.+++++..+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 479999999999999999999999999999998778999999999999999999999999999999999999886633
No 56
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=3e-14 Score=130.03 Aligned_cols=82 Identities=23% Similarity=0.389 Sum_probs=76.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
..+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 457899999999999999999999999999999987 577899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 001991 347 SIPKDNP 353 (985)
Q Consensus 347 a~pk~~~ 353 (985)
+.++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9887654
No 57
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.8e-14 Score=130.41 Aligned_cols=83 Identities=27% Similarity=0.404 Sum_probs=75.6
Q ss_pred ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC---CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 356 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH---KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 356 ~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~---skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
.....++|||+|||..+++++|+++|++||.|..|++..+ +++||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 3456789999999999999999999999999999998764 5789999999999999999999999999999999999
Q ss_pred cCcchh
Q 001991 433 RPGGAR 438 (985)
Q Consensus 433 ~~k~~R 438 (985)
+++..+
T Consensus 91 ~~~~~~ 96 (103)
T 2cqi_A 91 TTPSSQ 96 (103)
T ss_dssp CCTTCC
T ss_pred CCCccc
Confidence 986543
No 58
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=5.1e-14 Score=129.55 Aligned_cols=85 Identities=18% Similarity=0.394 Sum_probs=77.7
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe---ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki---tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
....+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34567899999999999999999999999999999976 457899999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 001991 347 SIPKDNPS 354 (985)
Q Consensus 347 a~pk~~~~ 354 (985)
+.++..+.
T Consensus 90 a~~~~~~~ 97 (103)
T 2d9p_A 90 AQRKEERQ 97 (103)
T ss_dssp CSSCCCCC
T ss_pred ecccccCC
Confidence 98876653
No 59
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4.1e-14 Score=129.50 Aligned_cols=83 Identities=14% Similarity=0.288 Sum_probs=76.0
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999976 46788999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 001991 346 YSIPKDN 352 (985)
Q Consensus 346 ~a~pk~~ 352 (985)
++.++..
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9987654
No 60
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.52 E-value=6.1e-15 Score=133.92 Aligned_cols=76 Identities=16% Similarity=0.337 Sum_probs=69.3
Q ss_pred cceeeecCCCCCCHHHHHHHhhccC-CEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhC-CceeCCceEEEEecc
Q 001991 361 GTLVVFNLDSSVSTEELHQIFGIYG-EIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLN-RSDVAGKQIKLEASR 433 (985)
Q Consensus 361 ~tLfV~NLp~svTeedLrelFs~fG-~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LN-G~~I~Gr~IkV~~A~ 433 (985)
++|||+|||.++|+++|+++|++|| +|.+|+++.+ ++|||||+|.+.++|++|++.++ +..++|++|+|+|++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 8999988753 68999999999999999999874 568999999999998
Q ss_pred Ccc
Q 001991 434 PGG 436 (985)
Q Consensus 434 ~k~ 436 (985)
++.
T Consensus 82 ~~~ 84 (91)
T 2lxi_A 82 PKP 84 (91)
T ss_dssp SCC
T ss_pred CCC
Confidence 865
No 61
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=4.5e-14 Score=130.41 Aligned_cols=83 Identities=19% Similarity=0.422 Sum_probs=75.9
Q ss_pred ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC------CCcEEEEEEcCHHHHHHHHHHh-CCceeCCceEE
Q 001991 356 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH------KHNHKFIEFYDIRAAETALRTL-NRSDVAGKQIK 428 (985)
Q Consensus 356 ~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~------skGfaFVeF~d~edA~kAI~~L-NG~~I~Gr~Ik 428 (985)
.....++|||+|||..+++++|+++|++||.|..|++..+ .+|||||+|.+.++|++|++.| |+..|.|++|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 4456789999999999999999999999999999999765 4899999999999999999999 99999999999
Q ss_pred EEeccCcchh
Q 001991 429 LEASRPGGAR 438 (985)
Q Consensus 429 V~~A~~k~~R 438 (985)
|.+++++..+
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999986543
No 62
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4.5e-14 Score=129.25 Aligned_cols=82 Identities=20% Similarity=0.322 Sum_probs=74.7
Q ss_pred ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 356 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 356 ~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
.....++|||+|||..+++++|+++|++||.|..|++..+ .+|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999998754 368999999999999999999999999999999999
Q ss_pred ccCcch
Q 001991 432 SRPGGA 437 (985)
Q Consensus 432 A~~k~~ 437 (985)
++++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 998653
No 63
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=4.4e-14 Score=128.88 Aligned_cols=81 Identities=22% Similarity=0.337 Sum_probs=74.6
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
...++|||+|||..+++++|+++|++||.|..|++..+ .+|||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45679999999999999999999999999999998654 5799999999999999999999999999999999999
Q ss_pred cCcchh
Q 001991 433 RPGGAR 438 (985)
Q Consensus 433 ~~k~~R 438 (985)
+++..+
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 987644
No 64
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.52 E-value=1.9e-14 Score=134.06 Aligned_cols=80 Identities=16% Similarity=0.309 Sum_probs=73.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcc--cccccccccccC
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKP--LRRRKLDIHYSI 348 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~--I~Gr~L~V~~a~ 348 (985)
...++++|||+|||.++|+++|+++|++||.|.+|++ .+.||||||+|++.++|.+|++.|++.. |.|++|+|.|++
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i-~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVV-MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEE-EcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 4458899999999999999999999999999999988 4578999999999999999999999986 789999999998
Q ss_pred CCC
Q 001991 349 PKD 351 (985)
Q Consensus 349 pk~ 351 (985)
++.
T Consensus 96 ~k~ 98 (100)
T 3r27_A 96 SQK 98 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 754
No 65
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.4e-14 Score=134.53 Aligned_cols=83 Identities=22% Similarity=0.322 Sum_probs=74.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccC--cccccccccccccC
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN--KPLRRRKLDIHYSI 348 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng--~~I~Gr~L~V~~a~ 348 (985)
...+.++|||+|||+++|+++|+++|++||+|.+|++. +.||||||+|.+.++|++|++.|++ ..|.|++|+|.|+.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~-~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 44578999999999999999999999999999999983 3589999999999999999998864 78999999999998
Q ss_pred CCCCCC
Q 001991 349 PKDNPS 354 (985)
Q Consensus 349 pk~~~~ 354 (985)
++....
T Consensus 91 ~~~~~~ 96 (105)
T 1sjq_A 91 HKELKT 96 (105)
T ss_dssp SSSCCC
T ss_pred CCCCCc
Confidence 776543
No 66
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.6e-14 Score=129.81 Aligned_cols=84 Identities=24% Similarity=0.455 Sum_probs=77.0
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 35567899999999999999999999999999999976 5678999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 001991 345 HYSIPKDNP 353 (985)
Q Consensus 345 ~~a~pk~~~ 353 (985)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (103)
T 2cq0_A 90 EWAKPSTNS 98 (103)
T ss_dssp EESSCCCCS
T ss_pred EECCCCCCC
Confidence 999877654
No 67
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.1e-14 Score=131.10 Aligned_cols=81 Identities=19% Similarity=0.194 Sum_probs=73.3
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHh--CCceeCCceEEEEeccC
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTL--NRSDVAGKQIKLEASRP 434 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~L--NG~~I~Gr~IkV~~A~~ 434 (985)
..+.++|||+|||..+++++|+++|++||.|.+|+++.+ +|||||+|.+.++|++|++.| ++..+.|++|+|.|+++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCc
Confidence 345679999999999999999999999999999998875 899999999999999999987 56789999999999997
Q ss_pred cchh
Q 001991 435 GGAR 438 (985)
Q Consensus 435 k~~R 438 (985)
+..+
T Consensus 91 ~~~~ 94 (101)
T 2cq1_A 91 KELK 94 (101)
T ss_dssp SSCC
T ss_pred ccCc
Confidence 6543
No 68
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.52 E-value=3.2e-14 Score=126.42 Aligned_cols=77 Identities=19% Similarity=0.362 Sum_probs=70.1
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecc
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 433 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~ 433 (985)
+.++|||+|||..+++++|+++|++||.|.+|++..+ .+|||||+|.+.++|++|++.|||..+.|++|+|.+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 4679999999999999999999999999999998654 47899999999999999999999999999999999998
Q ss_pred Cc
Q 001991 434 PG 435 (985)
Q Consensus 434 ~k 435 (985)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 75
No 69
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.8e-14 Score=129.97 Aligned_cols=84 Identities=17% Similarity=0.299 Sum_probs=77.2
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 45567899999999999999999999999999999986 5678999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 001991 345 HYSIPKDNP 353 (985)
Q Consensus 345 ~~a~pk~~~ 353 (985)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999877544
No 70
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.52 E-value=3.1e-14 Score=125.38 Aligned_cols=77 Identities=29% Similarity=0.477 Sum_probs=71.9
Q ss_pred CcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001991 275 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 349 (985)
Q Consensus 275 srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~p 349 (985)
+.+|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 468999999999999999999999999999876 467799999999999999999999999999999999999987
Q ss_pred CC
Q 001991 350 KD 351 (985)
Q Consensus 350 k~ 351 (985)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 71
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.52 E-value=7e-14 Score=128.89 Aligned_cols=83 Identities=19% Similarity=0.330 Sum_probs=75.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCccccc---cccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRR---RKLD 343 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~G---r~L~ 343 (985)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..+.| ++|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3456899999999999999999999999999999976 46679999999999999999999999999998 9999
Q ss_pred ccccCCCCCC
Q 001991 344 IHYSIPKDNP 353 (985)
Q Consensus 344 V~~a~pk~~~ 353 (985)
|.++.++..+
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999877654
No 72
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.52 E-value=3e-14 Score=126.70 Aligned_cols=79 Identities=22% Similarity=0.373 Sum_probs=72.6
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC------CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~------skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
..++|||+|||.++++++|+++|++||.|.+|++..+ .+|||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 3578999999999999999999999999999998643 5789999999999999999999999999999999999
Q ss_pred cCcch
Q 001991 433 RPGGA 437 (985)
Q Consensus 433 ~~k~~ 437 (985)
.+...
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 73
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.52 E-value=6.6e-14 Score=131.30 Aligned_cols=84 Identities=20% Similarity=0.407 Sum_probs=77.1
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
....+.++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|++..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 35567899999999999999999999999999999976 5667999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 001991 345 HYSIPKDNP 353 (985)
Q Consensus 345 ~~a~pk~~~ 353 (985)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999887654
No 74
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.1e-14 Score=131.02 Aligned_cols=84 Identities=23% Similarity=0.298 Sum_probs=76.3
Q ss_pred ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC---CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 356 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH---KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 356 ~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~---skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
.....++|||+|||..+++++|+++|++||.|..|++..+ .++||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 3456789999999999999999999999999999998753 5789999999999999999999999999999999999
Q ss_pred cCcchhh
Q 001991 433 RPGGARR 439 (985)
Q Consensus 433 ~~k~~Rr 439 (985)
+++..++
T Consensus 91 ~~~~~~~ 97 (103)
T 2d9p_A 91 QRKEERQ 97 (103)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9876543
No 75
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.51 E-value=3.5e-14 Score=125.60 Aligned_cols=76 Identities=25% Similarity=0.423 Sum_probs=70.8
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
...++|||+|||..+++++|+++|++||.|..|++..+ .+|||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45679999999999999999999999999999998644 5789999999999999999999999999999999998
Q ss_pred c
Q 001991 433 R 433 (985)
Q Consensus 433 ~ 433 (985)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 76
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.51 E-value=5.1e-14 Score=126.58 Aligned_cols=82 Identities=20% Similarity=0.299 Sum_probs=75.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe---ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 348 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki---tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~ 348 (985)
..+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 456799999999999999999999999999999976 56689999999999999999999999999999999999998
Q ss_pred CCCCC
Q 001991 349 PKDNP 353 (985)
Q Consensus 349 pk~~~ 353 (985)
+....
T Consensus 85 ~~~~~ 89 (92)
T 2dgv_A 85 NASGP 89 (92)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 76543
No 77
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.51 E-value=4.2e-14 Score=124.54 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=71.0
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCc
Q 001991 361 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 435 (985)
Q Consensus 361 ~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k 435 (985)
.+|||+|||.++++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..+.|++|+|.+++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999988644 3789999999999999999999999999999999999886
Q ss_pred c
Q 001991 436 G 436 (985)
Q Consensus 436 ~ 436 (985)
+
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 78
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.8e-14 Score=130.64 Aligned_cols=84 Identities=15% Similarity=0.309 Sum_probs=76.6
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe--ccccceEEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 347 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki--tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a 347 (985)
....+.++|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|++..|.|++|.|.++
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 45567899999999999999999999999999999987 4567899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 001991 348 IPKDNP 353 (985)
Q Consensus 348 ~pk~~~ 353 (985)
.++...
T Consensus 97 ~~~~~~ 102 (109)
T 1x4a_A 97 RSGRGT 102 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 876544
No 79
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=6.2e-14 Score=130.41 Aligned_cols=80 Identities=30% Similarity=0.454 Sum_probs=73.8
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC--CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH--KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 434 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~--skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~ 434 (985)
....++|||+|||.++++++|+++|++||.|..|++..+ +++||||+|.+.++|++|++.||+..|.|++|+|+++++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 445679999999999999999999999999999998654 578999999999999999999999999999999999987
Q ss_pred cc
Q 001991 435 GG 436 (985)
Q Consensus 435 k~ 436 (985)
+.
T Consensus 99 ~~ 100 (109)
T 1x4a_A 99 GR 100 (109)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 80
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=5.6e-14 Score=128.06 Aligned_cols=78 Identities=19% Similarity=0.351 Sum_probs=73.4
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeC--CceEEEEeccCc
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVA--GKQIKLEASRPG 435 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~--Gr~IkV~~A~~k 435 (985)
...++|||+|||..+++++|+++|++||.|.+|++..+ ++||||+|.+.++|++|++.|||..|. |++|+|++++++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 34679999999999999999999999999999999875 899999999999999999999999999 999999999986
Q ss_pred c
Q 001991 436 G 436 (985)
Q Consensus 436 ~ 436 (985)
.
T Consensus 94 ~ 94 (97)
T 1why_A 94 P 94 (97)
T ss_dssp C
T ss_pred C
Confidence 5
No 81
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=5.3e-14 Score=127.20 Aligned_cols=81 Identities=25% Similarity=0.445 Sum_probs=75.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 347 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a 347 (985)
.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46799999999999999999999999999999976 4678999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 001991 348 IPKDNP 353 (985)
Q Consensus 348 ~pk~~~ 353 (985)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 877654
No 82
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=7.3e-14 Score=128.50 Aligned_cols=83 Identities=20% Similarity=0.342 Sum_probs=75.7
Q ss_pred ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC---CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 356 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH---KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 356 ~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~---skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
.....++|||+|||..+++++|+++|++||.|..|++..+ .++||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 3456789999999999999999999999999999998755 4789999999999999999999999999999999999
Q ss_pred cCcchh
Q 001991 433 RPGGAR 438 (985)
Q Consensus 433 ~~k~~R 438 (985)
+++..+
T Consensus 91 ~~~~~~ 96 (103)
T 2cq3_A 91 TARVMT 96 (103)
T ss_dssp CSSCCC
T ss_pred ccCCCC
Confidence 886543
No 83
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=6.9e-14 Score=127.74 Aligned_cols=82 Identities=23% Similarity=0.485 Sum_probs=75.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++ |++..|.|++|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 4457799999999999999999999999999999987 46689999999999999999998 99999999999999
Q ss_pred ccCCCCCC
Q 001991 346 YSIPKDNP 353 (985)
Q Consensus 346 ~a~pk~~~ 353 (985)
++.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99887654
No 84
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.51 E-value=2.9e-14 Score=126.66 Aligned_cols=78 Identities=21% Similarity=0.430 Sum_probs=70.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 347 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a 347 (985)
.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35789999999999999999999999999999976 5668999999999999999999999999999999999999
Q ss_pred CCC
Q 001991 348 IPK 350 (985)
Q Consensus 348 ~pk 350 (985)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 765
No 85
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5.2e-14 Score=128.46 Aligned_cols=79 Identities=20% Similarity=0.361 Sum_probs=73.2
Q ss_pred ccccceeeecCCCCCCHHHHH----HHhhccCCEEEEEEcCCC--CcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 358 ANQGTLVVFNLDSSVSTEELH----QIFGIYGEIREIRDTQHK--HNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLr----elFs~fG~I~~Vri~~~s--kGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
....+|||+|||..+++++|+ ++|++||.|.+|+++.+. ++||||+|.+.++|++|++.|||..|.|++|+|++
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345799999999999999999 999999999999998553 88999999999999999999999999999999999
Q ss_pred ccCcc
Q 001991 432 SRPGG 436 (985)
Q Consensus 432 A~~k~ 436 (985)
++++.
T Consensus 87 a~~~~ 91 (96)
T 2dgx_A 87 ATGAS 91 (96)
T ss_dssp CCCSS
T ss_pred cCCCC
Confidence 98765
No 86
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.51 E-value=1.1e-14 Score=167.94 Aligned_cols=146 Identities=20% Similarity=0.326 Sum_probs=105.5
Q ss_pred HHHHhhcccCcEEEEEe-------ccccceEE-----EEEeCCHHHHHHHHHHccCccccccc-------------cccc
Q 001991 291 ELKALFEQFGDIRTIYT-------ACKHRGFV-----MISYYDIRAARNAMKALQNKPLRRRK-------------LDIH 345 (985)
Q Consensus 291 dLrelFs~fG~I~sVki-------tgksrGfA-----FV~F~d~esA~kAi~~Lng~~I~Gr~-------------L~V~ 345 (985)
.|.++|.++|+|..|.. ..+..+|+ |+.|.....+..++..++......+. ..+.
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 37899999999988732 11233344 77887766655554433332222110 0111
Q ss_pred ccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCc
Q 001991 346 YSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRS 420 (985)
Q Consensus 346 ~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~ 420 (985)
...+...........++|||+|||..+|+++|+++|++||.|+.|.|+.+ ++|||||+|.+.++|.+||..|||.
T Consensus 88 ~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred hcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC
Confidence 11222222223345679999999999999999999999999999998644 5899999999999999999999999
Q ss_pred eeCCceEEEEeccCcc
Q 001991 421 DVAGKQIKLEASRPGG 436 (985)
Q Consensus 421 ~I~Gr~IkV~~A~~k~ 436 (985)
.|.|++|.|.++.++.
T Consensus 168 ~i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 168 KIDGRRVLVDVERGRT 183 (437)
T ss_pred EECCEEEEEEEeCCCC
Confidence 9999999999998754
No 87
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.9e-14 Score=130.28 Aligned_cols=84 Identities=24% Similarity=0.381 Sum_probs=76.8
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 35567899999999999999999999999999999986 3678999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 001991 345 HYSIPKDNP 353 (985)
Q Consensus 345 ~~a~pk~~~ 353 (985)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dnm_A 88 QVARYGRRD 96 (103)
T ss_dssp EECSSCCSC
T ss_pred EECCcCCCC
Confidence 999876544
No 88
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.50 E-value=5.4e-14 Score=130.87 Aligned_cols=82 Identities=21% Similarity=0.347 Sum_probs=75.0
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
....++|||+|||..+++++|+++|++||.|..|++..+ .+|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 345679999999999999999999999999999998754 379999999999999999999999999999999999
Q ss_pred ccCcchh
Q 001991 432 SRPGGAR 438 (985)
Q Consensus 432 A~~k~~R 438 (985)
++++..+
T Consensus 103 a~~~~~~ 109 (110)
T 1oo0_B 103 CFVKGPK 109 (110)
T ss_dssp SEESSCC
T ss_pred cccCCCC
Confidence 9877644
No 89
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4.2e-14 Score=132.22 Aligned_cols=79 Identities=19% Similarity=0.205 Sum_probs=72.0
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCc--eeCCceEEEEeccCc
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRS--DVAGKQIKLEASRPG 435 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~--~I~Gr~IkV~~A~~k 435 (985)
.+.++|||+|||.++++++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.|++. .|.|++|+|+|++++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 45679999999999999999999999999999998764 899999999999999999998765 599999999999876
Q ss_pred ch
Q 001991 436 GA 437 (985)
Q Consensus 436 ~~ 437 (985)
..
T Consensus 92 ~~ 93 (104)
T 1wex_A 92 RI 93 (104)
T ss_dssp SC
T ss_pred cc
Confidence 53
No 90
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.6e-14 Score=130.12 Aligned_cols=82 Identities=24% Similarity=0.412 Sum_probs=75.2
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
....++|||+|||..+++++|+++|++||.|..|+++.+ .++||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 345679999999999999999999999999999998754 689999999999999999999999999999999999
Q ss_pred ccCcchh
Q 001991 432 SRPGGAR 438 (985)
Q Consensus 432 A~~k~~R 438 (985)
++++..+
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9987644
No 91
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.50 E-value=6.8e-14 Score=127.24 Aligned_cols=79 Identities=16% Similarity=0.259 Sum_probs=73.4
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 001991 360 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 434 (985)
Q Consensus 360 ~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~ 434 (985)
.++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..++|++|+|.++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 568999999999999999999999999999998754 479999999999999999999999999999999999998
Q ss_pred cchh
Q 001991 435 GGAR 438 (985)
Q Consensus 435 k~~R 438 (985)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 7643
No 92
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.50 E-value=6.8e-14 Score=131.22 Aligned_cols=82 Identities=21% Similarity=0.379 Sum_probs=75.0
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
....++|||+|||..+++++|+++|++||.|..|++..+ .+|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 346779999999999999999999999999999998754 368999999999999999999999999999999999
Q ss_pred ccCcchh
Q 001991 432 SRPGGAR 438 (985)
Q Consensus 432 A~~k~~R 438 (985)
++++..+
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9987644
No 93
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=7.4e-14 Score=128.97 Aligned_cols=84 Identities=25% Similarity=0.483 Sum_probs=76.6
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe------ccccceEEEEEeCCHHHHHHHHHHc-cCcccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT------ACKHRGFVMISYYDIRAARNAMKAL-QNKPLRRRKL 342 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki------tgksrGfAFV~F~d~esA~kAi~~L-ng~~I~Gr~L 342 (985)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.| ++..|.|++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 35567899999999999999999999999999999987 4557999999999999999999999 9999999999
Q ss_pred cccccCCCCCC
Q 001991 343 DIHYSIPKDNP 353 (985)
Q Consensus 343 ~V~~a~pk~~~ 353 (985)
.|.++.++...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999887654
No 94
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=5.8e-14 Score=131.29 Aligned_cols=84 Identities=17% Similarity=0.252 Sum_probs=74.2
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCc--ccccccccccc
Q 001991 269 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNK--PLRRRKLDIHY 346 (985)
Q Consensus 269 ~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~--~I~Gr~L~V~~ 346 (985)
+....++++|||+|||.++++++|+++|++||.|..|.+ .+.||||||+|.+.++|++|++.|++. .|.|++|+|.|
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 9 HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMM-MPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-ECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 345567899999999999999999999999999999987 345899999999999999999988765 49999999999
Q ss_pred cCCCCCC
Q 001991 347 SIPKDNP 353 (985)
Q Consensus 347 a~pk~~~ 353 (985)
+.++...
T Consensus 88 a~~~~~~ 94 (104)
T 1wex_A 88 STSKRIT 94 (104)
T ss_dssp CSSSSCC
T ss_pred ccCcccc
Confidence 9876543
No 95
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.50 E-value=3.8e-14 Score=128.96 Aligned_cols=79 Identities=22% Similarity=0.428 Sum_probs=73.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 348 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~ 348 (985)
++++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 5789999999999999999999999999999986 46779999999999999999999999999999999999998
Q ss_pred CCCC
Q 001991 349 PKDN 352 (985)
Q Consensus 349 pk~~ 352 (985)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7653
No 96
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=6.6e-14 Score=127.86 Aligned_cols=81 Identities=19% Similarity=0.399 Sum_probs=74.3
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
....++|||+|||..+++++|+++|++||.|..|+++.+ .+|||||+|.+.++|++|++ ||+..|.|++|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 345679999999999999999999999999999999754 57999999999999999999 999999999999999
Q ss_pred ccCcchh
Q 001991 432 SRPGGAR 438 (985)
Q Consensus 432 A~~k~~R 438 (985)
++++..+
T Consensus 86 a~~~~~~ 92 (99)
T 2dgs_A 86 AEPRDSK 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCccc
Confidence 9987644
No 97
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.50 E-value=6e-14 Score=131.76 Aligned_cols=84 Identities=17% Similarity=0.345 Sum_probs=76.9
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34557799999999999999999999999999999876 5778999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 001991 345 HYSIPKDNP 353 (985)
Q Consensus 345 ~~a~pk~~~ 353 (985)
.++.++...
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpz_A 100 QLKRSKNDS 108 (115)
T ss_dssp ECCCCSCCC
T ss_pred EEcCCCCcC
Confidence 999887654
No 98
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.1e-13 Score=127.28 Aligned_cols=84 Identities=21% Similarity=0.385 Sum_probs=76.3
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe---ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki---tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
....+.++|||+|||.++++++|+++|++||+|..|++ ...++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35567899999999999999999999999999999987 234689999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 001991 347 SIPKDNP 353 (985)
Q Consensus 347 a~pk~~~ 353 (985)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9887654
No 99
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.7e-14 Score=130.26 Aligned_cols=81 Identities=17% Similarity=0.444 Sum_probs=74.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 4456799999999999999999999999999999986 37789999999999999999999999999999999999
Q ss_pred ccCCCC
Q 001991 346 YSIPKD 351 (985)
Q Consensus 346 ~a~pk~ 351 (985)
++.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 998764
No 100
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=5.6e-14 Score=126.31 Aligned_cols=78 Identities=28% Similarity=0.408 Sum_probs=72.9
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcch
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 437 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~~ 437 (985)
...++|||+|||.++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|||..+.|++|+|++++++..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 456799999999999999999999999999999987 78999999999999999999999999999999999988654
Q ss_pred h
Q 001991 438 R 438 (985)
Q Consensus 438 R 438 (985)
+
T Consensus 83 ~ 83 (90)
T 2dnq_A 83 A 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 101
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=5.3e-14 Score=135.00 Aligned_cols=85 Identities=21% Similarity=0.302 Sum_probs=75.6
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccC--cccccccccccc
Q 001991 269 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN--KPLRRRKLDIHY 346 (985)
Q Consensus 269 ~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng--~~I~Gr~L~V~~ 346 (985)
.....++++|||+|||+++++++|+++|++||.|..|++ .+.||||||+|++.++|++|++.+++ ..|.|++|+|.|
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i-~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLM-LKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEE-EGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 445567899999999999999999999999999999988 34589999999999999999998875 689999999999
Q ss_pred cCCCCCCC
Q 001991 347 SIPKDNPS 354 (985)
Q Consensus 347 a~pk~~~~ 354 (985)
+.++....
T Consensus 104 a~~k~~~~ 111 (119)
T 2ad9_A 104 SNHKELKT 111 (119)
T ss_dssp CSSSSCCC
T ss_pred ccCCCCCc
Confidence 98776543
No 102
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=8.3e-14 Score=125.75 Aligned_cols=78 Identities=21% Similarity=0.391 Sum_probs=72.0
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
....++|||+|||..+++++|+++|++||.|..|++..+ .++||||+|.+.++|++|++.|||..|.|++|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 456789999999999999999999999999999998643 468999999999999999999999999999999999
Q ss_pred ccC
Q 001991 432 SRP 434 (985)
Q Consensus 432 A~~ 434 (985)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 875
No 103
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.9e-14 Score=136.82 Aligned_cols=80 Identities=18% Similarity=0.212 Sum_probs=73.3
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCC--ceeCCceEEEEeccCc
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNR--SDVAGKQIKLEASRPG 435 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG--~~I~Gr~IkV~~A~~k 435 (985)
.+.++|||+|||+++++++|+++|++||.|.+|+++.+ +|||||+|.+.++|++|++.|++ ..|.|++|+|.+++++
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 45679999999999999999999999999999998875 89999999999999999999984 6899999999999887
Q ss_pred chh
Q 001991 436 GAR 438 (985)
Q Consensus 436 ~~R 438 (985)
..+
T Consensus 108 ~~~ 110 (119)
T 2ad9_A 108 ELK 110 (119)
T ss_dssp SCC
T ss_pred CCC
Confidence 644
No 104
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=3.2e-14 Score=132.90 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=71.2
Q ss_pred ccccceeeecCCC-CCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCc--eeCCceEEEEeccC
Q 001991 358 ANQGTLVVFNLDS-SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRS--DVAGKQIKLEASRP 434 (985)
Q Consensus 358 ~~~~tLfV~NLp~-svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~--~I~Gr~IkV~~A~~ 434 (985)
.+.++|||+|||. ++++++|+++|++||.|.+|+++.+ ++||||+|.+.++|++|++.||+. .|.|++|+|.+++.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 3567999999999 9999999999999999999999865 799999999999999999999864 59999999999986
Q ss_pred cc
Q 001991 435 GG 436 (985)
Q Consensus 435 k~ 436 (985)
+.
T Consensus 92 ~~ 93 (102)
T 1x4d_A 92 YK 93 (102)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 105
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=7e-14 Score=126.41 Aligned_cols=80 Identities=25% Similarity=0.341 Sum_probs=73.7
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecc
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 433 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~ 433 (985)
..++|||+|||..+++++|+++|++||.|..|++..+ .++||||+|.+.++|++|++.|||..|.|++|+|.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 4579999999999999999999999999999998754 47899999999999999999999999999999999998
Q ss_pred Ccchh
Q 001991 434 PGGAR 438 (985)
Q Consensus 434 ~k~~R 438 (985)
++..+
T Consensus 84 ~~~~~ 88 (95)
T 2dnz_A 84 ERLDG 88 (95)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 86543
No 106
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=6.3e-14 Score=129.19 Aligned_cols=82 Identities=21% Similarity=0.311 Sum_probs=74.9
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
....++|||+|||..+++++|+++|++||.|..|++..+ .+|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 445679999999999999999999999999999998754 468999999999999999999999999999999999
Q ss_pred ccCcchh
Q 001991 432 SRPGGAR 438 (985)
Q Consensus 432 A~~k~~R 438 (985)
++++..+
T Consensus 92 a~~~~~~ 98 (105)
T 1x5u_A 92 ASAHNKN 98 (105)
T ss_dssp TTTTSCC
T ss_pred CCCCCcC
Confidence 9886543
No 107
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=8e-14 Score=129.59 Aligned_cols=85 Identities=22% Similarity=0.479 Sum_probs=77.6
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHcc------Cccc
Q 001991 269 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQ------NKPL 337 (985)
Q Consensus 269 ~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Ln------g~~I 337 (985)
+....+.++|||+|||.++++++|+++|++||+|..|++ ++.++|||||+|.+.++|++|++.|+ +..|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 345567899999999999999999999999999999986 36789999999999999999999999 9999
Q ss_pred ccccccccccCCCCCC
Q 001991 338 RRRKLDIHYSIPKDNP 353 (985)
Q Consensus 338 ~Gr~L~V~~a~pk~~~ 353 (985)
.|+.|.|.++.++...
T Consensus 89 ~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDEA 104 (111)
T ss_dssp SSCEEEEECCCCCCCC
T ss_pred cCEEEEEEECCCCccC
Confidence 9999999999887654
No 108
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.49 E-value=7.5e-14 Score=130.67 Aligned_cols=82 Identities=23% Similarity=0.459 Sum_probs=75.6
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 35567899999999999999999999999999999876 4678999999999999999999999999999999999
Q ss_pred cccCCCC
Q 001991 345 HYSIPKD 351 (985)
Q Consensus 345 ~~a~pk~ 351 (985)
.++.++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998764
No 109
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.8e-14 Score=130.21 Aligned_cols=80 Identities=24% Similarity=0.399 Sum_probs=73.5
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
....++|||+|||..+++++|+++|++||.|..|++..+ ++|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 445679999999999999999999999999999998743 468999999999999999999999999999999999
Q ss_pred ccCcc
Q 001991 432 SRPGG 436 (985)
Q Consensus 432 A~~k~ 436 (985)
++++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98765
No 110
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=7.5e-14 Score=130.14 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=73.3
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCC-----ceEEEEec
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAG-----KQIKLEAS 432 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~G-----r~IkV~~A 432 (985)
...++|||+|||.++++++|+++|++||.|..|++..+ +||||+|.+.++|++||+.|||..|.| ++|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 45679999999999999999999999999999999876 999999999999999999999999999 99999999
Q ss_pred cCcch
Q 001991 433 RPGGA 437 (985)
Q Consensus 433 ~~k~~ 437 (985)
+++..
T Consensus 91 ~~~~~ 95 (108)
T 1x4c_A 91 GPRSP 95 (108)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 98653
No 111
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=1.1e-13 Score=128.76 Aligned_cols=82 Identities=20% Similarity=0.342 Sum_probs=75.3
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhC------CceeCCc
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLN------RSDVAGK 425 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LN------G~~I~Gr 425 (985)
....++|||+|||..+++++|+++|++||.|..|++..+ .+|||||+|.+.++|++|++.|| +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 345679999999999999999999999999999998744 58899999999999999999999 9999999
Q ss_pred eEEEEeccCcchh
Q 001991 426 QIKLEASRPGGAR 438 (985)
Q Consensus 426 ~IkV~~A~~k~~R 438 (985)
+|+|.++.++..+
T Consensus 92 ~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 92 QLKVDLAVTRDEA 104 (111)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEEECCCCccC
Confidence 9999999987644
No 112
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=8.8e-14 Score=127.94 Aligned_cols=84 Identities=18% Similarity=0.421 Sum_probs=76.0
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe---ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki---tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
....+.++|||+|||.++++++|+++|++||+|..|++ ...++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 35567899999999999999999999999999999987 234689999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 001991 347 SIPKDNP 353 (985)
Q Consensus 347 a~pk~~~ 353 (985)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9876544
No 113
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=7.2e-14 Score=127.24 Aligned_cols=81 Identities=27% Similarity=0.463 Sum_probs=74.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEec--------cccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTA--------CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkit--------gksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
.+.++|||+|||.++++++|+++|++||+|..|++. ++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 467999999999999999999999999999998762 277899999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 001991 345 HYSIPKDNP 353 (985)
Q Consensus 345 ~~a~pk~~~ 353 (985)
.++.++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876654
No 114
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.49 E-value=5.5e-14 Score=124.36 Aligned_cols=77 Identities=29% Similarity=0.484 Sum_probs=71.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
..+.++|||+|||+++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356799999999999999999999999999999976 466899999999999999999999999999999999998
Q ss_pred cC
Q 001991 347 SI 348 (985)
Q Consensus 347 a~ 348 (985)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 115
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.49 E-value=4.9e-14 Score=132.34 Aligned_cols=82 Identities=16% Similarity=0.341 Sum_probs=74.6
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
....++|||+|||.++++++|+++|++||.|.+|++..+ .++||||+|.+.++|++|++.||+..|.|++|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345679999999999999999999999999999988654 358999999999999999999999999999999999
Q ss_pred ccCcchh
Q 001991 432 SRPGGAR 438 (985)
Q Consensus 432 A~~k~~R 438 (985)
++++..+
T Consensus 102 a~~~~~~ 108 (115)
T 2cpz_A 102 KRSKNDS 108 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCcC
Confidence 9987654
No 116
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.8e-14 Score=129.17 Aligned_cols=82 Identities=20% Similarity=0.310 Sum_probs=74.7
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
....++|||+|||..+++++|+++|++||.|..|++..+ .+|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 445789999999999999999999999999999998654 468999999999999999999999999999999999
Q ss_pred ccCcchh
Q 001991 432 SRPGGAR 438 (985)
Q Consensus 432 A~~k~~R 438 (985)
++++..+
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9987643
No 117
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.4e-14 Score=129.59 Aligned_cols=81 Identities=26% Similarity=0.489 Sum_probs=74.6
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
...++|||+|||..+++++|+++|++||.|..|++..+ .++||||+|.+.++|++|++.||+..|.|++|+|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45679999999999999999999999999999999764 5789999999999999999999999999999999999
Q ss_pred cCcchh
Q 001991 433 RPGGAR 438 (985)
Q Consensus 433 ~~k~~R 438 (985)
+++..+
T Consensus 90 ~~~~~~ 95 (102)
T 1x5s_A 90 GKSSDN 95 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 886643
No 118
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.49 E-value=8.6e-14 Score=128.28 Aligned_cols=83 Identities=18% Similarity=0.261 Sum_probs=75.1
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCceeCC---ceEEE
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAG---KQIKL 429 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~G---r~IkV 429 (985)
....++|||+|||..+++++|+++|++||.|..|++..+ ++|||||+|.+.++|++|++.|||..+.| ++|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 345789999999999999999999999999999998754 36899999999999999999999999988 99999
Q ss_pred EeccCcchhh
Q 001991 430 EASRPGGARR 439 (985)
Q Consensus 430 ~~A~~k~~Rr 439 (985)
.+++++..++
T Consensus 92 ~~a~~~~~~~ 101 (105)
T 2dnh_A 92 KFADTDKESG 101 (105)
T ss_dssp EESCSSCCCS
T ss_pred EECccCcccC
Confidence 9999876543
No 119
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=7.2e-14 Score=130.15 Aligned_cols=80 Identities=20% Similarity=0.303 Sum_probs=74.8
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcch
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 437 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~~ 437 (985)
...++|||+|||..+++++|+++|++||.|..|++..+ ++||||+|.+.++|++|++.|||..|.|++|+|.|++++..
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 45679999999999999999999999999999999876 89999999999999999999999999999999999998664
Q ss_pred h
Q 001991 438 R 438 (985)
Q Consensus 438 R 438 (985)
.
T Consensus 102 ~ 102 (109)
T 1x4g_A 102 M 102 (109)
T ss_dssp S
T ss_pred C
Confidence 3
No 120
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.4e-13 Score=124.28 Aligned_cols=77 Identities=26% Similarity=0.421 Sum_probs=71.4
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
....++|||+|||..+++++|+++|++||.|..|++..+ .++||||+|.+.++|++|++.|||..|.|++|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 345679999999999999999999999999999999754 468999999999999999999999999999999999
Q ss_pred cc
Q 001991 432 SR 433 (985)
Q Consensus 432 A~ 433 (985)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 121
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.49 E-value=4.9e-14 Score=131.49 Aligned_cols=95 Identities=17% Similarity=0.289 Sum_probs=81.1
Q ss_pred ccccccccccCCCCCCCcccccccceeeecCCCC-CCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHH
Q 001991 338 RRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSS-VSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRT 416 (985)
Q Consensus 338 ~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~s-vTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~ 416 (985)
.|..|.+..+.+.... ......++|||+|||.. +++++|+++|++||.|..|++ .++||||+|.+.++|++|++.
T Consensus 6 ~g~~~~~~~s~~~~~~-~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKN-DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLG 81 (110)
T ss_dssp CSCCCCCCCCCSCCSC-CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHH
T ss_pred CCcccccccCCCCCCC-CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHH
Confidence 4567777766544332 22344579999999999 999999999999999999998 589999999999999999999
Q ss_pred hCCceeCCceEEEEeccCcc
Q 001991 417 LNRSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 417 LNG~~I~Gr~IkV~~A~~k~ 436 (985)
|||..|.|++|+|++++++.
T Consensus 82 l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 82 ENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp HTTCEETTEECCEEESCCCC
T ss_pred cCCCEECCeEEEEEECCCCC
Confidence 99999999999999998544
No 122
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=6.2e-14 Score=130.92 Aligned_cols=80 Identities=15% Similarity=0.154 Sum_probs=72.3
Q ss_pred CCCCcEEEEecCCC-CCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCc--ccccccccccccC
Q 001991 272 EHPSRTLFVRNINS-NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNK--PLRRRKLDIHYSI 348 (985)
Q Consensus 272 e~~srtLfVgNLP~-~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~--~I~Gr~L~V~~a~ 348 (985)
..++++|||+|||+ ++++++|+++|++||.|.+|++ -+.+|||||+|.+.++|++|++.|++. .|.|++|+|.++.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLI-LNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEE-CSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEE-EcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 34789999999999 9999999999999999999998 456799999999999999999999875 4999999999998
Q ss_pred CCCC
Q 001991 349 PKDN 352 (985)
Q Consensus 349 pk~~ 352 (985)
++..
T Consensus 91 ~~~~ 94 (102)
T 1x4d_A 91 KYKR 94 (102)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 6543
No 123
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=5.2e-14 Score=128.17 Aligned_cols=79 Identities=23% Similarity=0.364 Sum_probs=72.6
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC--------CCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ--------HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 430 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~--------~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~ 430 (985)
..++|||+|||.++++++|+++|++||.|..|++.. ..++||||+|.+.++|++|++.|||..|.|++|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 457999999999999999999999999999998864 346899999999999999999999999999999999
Q ss_pred eccCcch
Q 001991 431 ASRPGGA 437 (985)
Q Consensus 431 ~A~~k~~ 437 (985)
+++++..
T Consensus 84 ~a~~~~~ 90 (98)
T 2cpf_A 84 ISERATK 90 (98)
T ss_dssp CSSCSSC
T ss_pred EccCCCC
Confidence 9987653
No 124
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.2e-13 Score=128.69 Aligned_cols=83 Identities=25% Similarity=0.341 Sum_probs=73.6
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHcc--Cccccccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQ--NKPLRRRKLDIHYS 347 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Ln--g~~I~Gr~L~V~~a 347 (985)
....++++|||+|||.++++++|+++|++||.|..|.+. +.||||||+|.+.++|++|++.|+ +..+.|++|+|.|+
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILML-KGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 345678999999999999999999999999999999873 459999999999999999999875 57799999999999
Q ss_pred CCCCCC
Q 001991 348 IPKDNP 353 (985)
Q Consensus 348 ~pk~~~ 353 (985)
.++...
T Consensus 89 ~~~~~~ 94 (101)
T 2cq1_A 89 NHKELK 94 (101)
T ss_dssp SCSSCC
T ss_pred CcccCc
Confidence 876543
No 125
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.2e-14 Score=126.17 Aligned_cols=80 Identities=18% Similarity=0.362 Sum_probs=73.6
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999999976 3678999999999999999999999999999999999
Q ss_pred cccCC
Q 001991 345 HYSIP 349 (985)
Q Consensus 345 ~~a~p 349 (985)
.++.+
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99863
No 126
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=1.4e-13 Score=125.32 Aligned_cols=81 Identities=28% Similarity=0.492 Sum_probs=74.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccc--cccccccccC
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR--RRKLDIHYSI 348 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~--Gr~L~V~~a~ 348 (985)
...+.++|||+|||.++++++|+++|++||+|..|++. ..+|||||+|.+.++|++|++.|++..|. |++|.|.++.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHV-KGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEEC-SSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe-CCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 34567999999999999999999999999999999983 34899999999999999999999999999 9999999998
Q ss_pred CCCC
Q 001991 349 PKDN 352 (985)
Q Consensus 349 pk~~ 352 (985)
++..
T Consensus 92 ~~~~ 95 (97)
T 1why_A 92 SGPS 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 127
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.4e-14 Score=127.99 Aligned_cols=81 Identities=22% Similarity=0.457 Sum_probs=74.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEE-Ee-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTI-YT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV-ki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
.+.++|||+|||.++++++|+++|++||.|..+ ++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467999999999999999999999999999887 65 466799999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 001991 347 SIPKDNP 353 (985)
Q Consensus 347 a~pk~~~ 353 (985)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9887654
No 128
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7e-14 Score=128.23 Aligned_cols=83 Identities=20% Similarity=0.446 Sum_probs=75.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.||+..|.|++|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3457799999999999999999999999999999987 45688999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 001991 346 YSIPKDNP 353 (985)
Q Consensus 346 ~a~pk~~~ 353 (985)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99876654
No 129
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.4e-14 Score=128.00 Aligned_cols=80 Identities=18% Similarity=0.330 Sum_probs=73.8
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEE-EEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREI-RDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~V-ri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
..++|||+|||..+++++|+++|++||.|..| ++..+ .++||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46799999999999999999999999999998 88764 5789999999999999999999999999999999999
Q ss_pred cCcchh
Q 001991 433 RPGGAR 438 (985)
Q Consensus 433 ~~k~~R 438 (985)
+++..+
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 887644
No 130
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=9.3e-14 Score=125.35 Aligned_cols=78 Identities=23% Similarity=0.432 Sum_probs=72.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4457799999999999999999999999999999987 36678999999999999999999999999999999999
Q ss_pred ccC
Q 001991 346 YSI 348 (985)
Q Consensus 346 ~a~ 348 (985)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 131
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.3e-13 Score=126.83 Aligned_cols=83 Identities=20% Similarity=0.380 Sum_probs=76.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcc-cCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCcc-cccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQ-FGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKP-LRRRKLDI 344 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~-fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~-I~Gr~L~V 344 (985)
...+.++|||+|||.++++++|+++|++ ||.|..|++ +++++|||||+|.+.++|++|++.|++.. |.|++|.|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 4457799999999999999999999999 999999976 56789999999999999999999999999 99999999
Q ss_pred cccCCCCCC
Q 001991 345 HYSIPKDNP 353 (985)
Q Consensus 345 ~~a~pk~~~ 353 (985)
.++.++...
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999877654
No 132
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.48 E-value=1.1e-13 Score=127.69 Aligned_cols=79 Identities=27% Similarity=0.493 Sum_probs=73.2
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcch
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 437 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~~ 437 (985)
.+.++|||+|||..+++++|+++|++||.|..|++. ++||||+|.+.++|++|++.||+..|.|++|+|.+++++..
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 456799999999999999999999999999999987 57999999999999999999999999999999999998764
Q ss_pred hh
Q 001991 438 RR 439 (985)
Q Consensus 438 Rr 439 (985)
++
T Consensus 86 ~~ 87 (103)
T 2dgu_A 86 KR 87 (103)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 133
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.48 E-value=3e-14 Score=131.12 Aligned_cols=76 Identities=16% Similarity=0.339 Sum_probs=68.3
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCC--EEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCc----eeCCceE
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGE--IREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRS----DVAGKQI 427 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~--I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~----~I~Gr~I 427 (985)
.-.||||+|||+.+|+++|+++|++||. |.+|+++.+ ++|||||+|.+.++|++|++.|||. .|+||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3468999999999999999999999995 567887654 6899999999999999999999997 5899999
Q ss_pred EEEeccC
Q 001991 428 KLEASRP 434 (985)
Q Consensus 428 kV~~A~~ 434 (985)
.|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999974
No 134
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.3e-14 Score=128.52 Aligned_cols=83 Identities=28% Similarity=0.445 Sum_probs=76.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3457899999999999999999999999999999986 46689999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 001991 346 YSIPKDNP 353 (985)
Q Consensus 346 ~a~pk~~~ 353 (985)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99887654
No 135
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=7.5e-14 Score=128.43 Aligned_cols=81 Identities=23% Similarity=0.418 Sum_probs=74.1
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
....++|||+|||..+++++|+++|++||.|..|++..+ .++||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 345679999999999999999999999999999998754 478999999999999999999999999999999999
Q ss_pred ccCcch
Q 001991 432 SRPGGA 437 (985)
Q Consensus 432 A~~k~~ 437 (985)
++++..
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 987653
No 136
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.48 E-value=6.9e-14 Score=131.03 Aligned_cols=81 Identities=23% Similarity=0.421 Sum_probs=73.2
Q ss_pred cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 001991 355 EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 434 (985)
Q Consensus 355 ~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~ 434 (985)
......++|||+|||..+++++|+++|++||.|..|++. +|||||+|.+.++|++|++.|||..|.|++|+|.++++
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 344567899999999999999999999999999999987 89999999999999999999999999999999999988
Q ss_pred cchh
Q 001991 435 GGAR 438 (985)
Q Consensus 435 k~~R 438 (985)
+..|
T Consensus 103 ~~~r 106 (108)
T 2jvo_A 103 PAKR 106 (108)
T ss_dssp CC--
T ss_pred CCCC
Confidence 6543
No 137
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1e-13 Score=122.74 Aligned_cols=76 Identities=32% Similarity=0.443 Sum_probs=71.2
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHh-CCceeCCceEEEEecc
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTL-NRSDVAGKQIKLEASR 433 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~L-NG~~I~Gr~IkV~~A~ 433 (985)
....++|||+|||..+++++|+++|++||.|..|++.. .+|||||+|.+.++|++|++.| ||..+.|++|+|+|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 45668999999999999999999999999999999886 4899999999999999999999 9999999999999985
No 138
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.48 E-value=2.8e-14 Score=128.59 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=66.2
Q ss_pred cEEEEecCCCCCCHHHHHHhhcccC--cEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001991 276 RTLFVRNINSNVEDSELKALFEQFG--DIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 348 (985)
Q Consensus 276 rtLfVgNLP~~vTEedLrelFs~fG--~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~ 348 (985)
.+|||+|||.++++++|+++|++|| .|.++++ +++++|||||+|.+.++|++|++.|||..|.|++|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 8988875 67889999999999999999999999999999999999998
Q ss_pred CCCCC
Q 001991 349 PKDNP 353 (985)
Q Consensus 349 pk~~~ 353 (985)
++...
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 76543
No 139
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.47 E-value=1e-13 Score=125.39 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=72.0
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
....++|||+|||..+++++|+++|++||.|..|++..+ .++||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 345679999999999999999999999999999998754 3689999999999999999999999999999999998
Q ss_pred cC
Q 001991 433 RP 434 (985)
Q Consensus 433 ~~ 434 (985)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 140
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=9.2e-14 Score=127.09 Aligned_cols=81 Identities=26% Similarity=0.481 Sum_probs=74.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 350 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk 350 (985)
...+.++|||+|||.++++++|+++|++||+|..|++ .+.+|||||+|.+.++|++|++.|++..|.|++|.|.++.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~-~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI-HKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEE-ETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEE-ecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 4457799999999999999999999999999999998 466899999999999999999999999999999999999876
Q ss_pred CC
Q 001991 351 DN 352 (985)
Q Consensus 351 ~~ 352 (985)
..
T Consensus 90 ~~ 91 (99)
T 2cpj_A 90 AS 91 (99)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 141
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.4e-13 Score=124.13 Aligned_cols=78 Identities=22% Similarity=0.324 Sum_probs=72.5
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcc
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~ 436 (985)
....++|||+|||..+++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|||..|.|++|+|.+++++.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 4557899999999999999999999999999999987 4599999999999999999999999999999999998765
Q ss_pred h
Q 001991 437 A 437 (985)
Q Consensus 437 ~ 437 (985)
.
T Consensus 84 ~ 84 (92)
T 2dgt_A 84 R 84 (92)
T ss_dssp S
T ss_pred C
Confidence 3
No 142
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.47 E-value=9.2e-14 Score=128.30 Aligned_cols=84 Identities=25% Similarity=0.475 Sum_probs=76.4
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccc---cccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPL---RRRK 341 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I---~Gr~ 341 (985)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+ .|++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 35567899999999999999999999999999999986 467899999999999999999999999988 8999
Q ss_pred ccccccCCCCCC
Q 001991 342 LDIHYSIPKDNP 353 (985)
Q Consensus 342 L~V~~a~pk~~~ 353 (985)
|.|.++.++...
T Consensus 88 l~v~~a~~~~~~ 99 (106)
T 2dgp_A 88 IQVKPADSESRG 99 (106)
T ss_dssp CEEEECCCCSCC
T ss_pred EEEEECCccccc
Confidence 999999876543
No 143
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=9.7e-14 Score=130.14 Aligned_cols=80 Identities=16% Similarity=0.302 Sum_probs=73.4
Q ss_pred cccccceeeecCCCCCCHHHHH---HHhhccCCEEEEEEcCC--------CCcEEEEEEcCHHHHHHHHHHhCCceeCCc
Q 001991 357 DANQGTLVVFNLDSSVSTEELH---QIFGIYGEIREIRDTQH--------KHNHKFIEFYDIRAAETALRTLNRSDVAGK 425 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLr---elFs~fG~I~~Vri~~~--------skGfaFVeF~d~edA~kAI~~LNG~~I~Gr 425 (985)
....++|||+|||.++++++|+ ++|++||+|.+|+++.+ .+|||||+|.+.++|++|++.|||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456799999999999999999 99999999999998754 347999999999999999999999999999
Q ss_pred eEEEEeccCcc
Q 001991 426 QIKLEASRPGG 436 (985)
Q Consensus 426 ~IkV~~A~~k~ 436 (985)
+|+|.++.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998865
No 144
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=9e-14 Score=127.15 Aligned_cols=79 Identities=24% Similarity=0.339 Sum_probs=73.6
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcc
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~ 436 (985)
....++|||+|||..+++++|+++|++||.|..|++..+ ++||||+|.+.++|++|++.|||..|.|++|+|.+++++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 345679999999999999999999999999999998764 8999999999999999999999999999999999998765
No 145
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=123.84 Aligned_cols=78 Identities=26% Similarity=0.386 Sum_probs=72.4
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcc
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~ 436 (985)
....++|||+|||..+++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|||..+.|++|+|.+++++.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 3456799999999999999999999999999999987 4599999999999999999999999999999999998765
Q ss_pred h
Q 001991 437 A 437 (985)
Q Consensus 437 ~ 437 (985)
.
T Consensus 83 ~ 83 (90)
T 2dnp_A 83 K 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 146
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.47 E-value=7e-14 Score=132.41 Aligned_cols=78 Identities=18% Similarity=0.136 Sum_probs=71.5
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccC-CEEEEEEc-CCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcc
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYG-EIREIRDT-QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG-~I~~Vri~-~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~ 436 (985)
...+|||+|||.++++++|+++|++|| +|..+++. .+++|||||+|.+.++|++|++.|||..|.|++|+|++++.+.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 457999999999999999999999999 99999985 4679999999999999999999999999999999999997653
No 147
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.4e-13 Score=123.68 Aligned_cols=79 Identities=22% Similarity=0.390 Sum_probs=73.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCC
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKD 351 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~ 351 (985)
..+.++|||+|||.++++++|+++|++||+|..|++. +|||||+|.+.++|++|++.|++..+.|++|.|.++.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 4577999999999999999999999999999999984 8999999999999999999999999999999999998776
Q ss_pred CC
Q 001991 352 NP 353 (985)
Q Consensus 352 ~~ 353 (985)
..
T Consensus 82 ~~ 83 (90)
T 2dnq_A 82 KA 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 148
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.47 E-value=1.1e-13 Score=127.91 Aligned_cols=83 Identities=16% Similarity=0.320 Sum_probs=75.1
Q ss_pred ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCcee---CCceE
Q 001991 356 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDV---AGKQI 427 (985)
Q Consensus 356 ~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I---~Gr~I 427 (985)
.....++|||+|||..+++++|+++|++||.|.+|+++.+ .+|||||+|.+.++|++|++.|||..+ .|++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 3456789999999999999999999999999999998764 579999999999999999999999988 89999
Q ss_pred EEEeccCcchh
Q 001991 428 KLEASRPGGAR 438 (985)
Q Consensus 428 kV~~A~~k~~R 438 (985)
+|.+++++..+
T Consensus 89 ~v~~a~~~~~~ 99 (106)
T 2dgp_A 89 QVKPADSESRG 99 (106)
T ss_dssp EEEECCCCSCC
T ss_pred EEEECCccccc
Confidence 99999886543
No 149
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.47 E-value=8e-14 Score=126.01 Aligned_cols=79 Identities=23% Similarity=0.332 Sum_probs=72.5
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
....+.++|||+|||+++++++|+++|++||+|..|++ .++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 45567899999999999999999999999999999976 35679999999999999999999999999999999999
Q ss_pred ccC
Q 001991 346 YSI 348 (985)
Q Consensus 346 ~a~ 348 (985)
++.
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 875
No 150
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.47 E-value=1.1e-13 Score=133.72 Aligned_cols=82 Identities=21% Similarity=0.434 Sum_probs=75.8
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
....+.++|||+|||.++++++|+++|++||+|..|++ +++.+|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 35567899999999999999999999999999999986 4678999999999999999999999999999999999
Q ss_pred cccCCCC
Q 001991 345 HYSIPKD 351 (985)
Q Consensus 345 ~~a~pk~ 351 (985)
.++.++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9998764
No 151
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.47 E-value=1.5e-13 Score=133.06 Aligned_cols=83 Identities=23% Similarity=0.366 Sum_probs=75.3
Q ss_pred ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 001991 356 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 430 (985)
Q Consensus 356 ~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~ 430 (985)
.....++|||+|||.++++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.|||..|.|++|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3445679999999999999999999999999999998644 47899999999999999999999999999999999
Q ss_pred eccCcchh
Q 001991 431 ASRPGGAR 438 (985)
Q Consensus 431 ~A~~k~~R 438 (985)
+++++..+
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99987644
No 152
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=8.3e-14 Score=130.29 Aligned_cols=81 Identities=22% Similarity=0.386 Sum_probs=74.5
Q ss_pred cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC---CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 355 EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH---KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 355 ~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~---skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
......++|||+|||..+++++|+++|++||.|..|++..+ .+|||||+|.+.++|++|++.|||..|+|++|+|++
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34456789999999999999999999999999999998754 479999999999999999999999999999999999
Q ss_pred ccCc
Q 001991 432 SRPG 435 (985)
Q Consensus 432 A~~k 435 (985)
++++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9875
No 153
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.6e-13 Score=124.08 Aligned_cols=78 Identities=23% Similarity=0.342 Sum_probs=72.3
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhcc--CCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIY--GEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 434 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~f--G~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~ 434 (985)
....++|||+|||..+++++|+++|++| |.|..|++. ++||||+|.+.++|++|++.|||..|.|++|+|.++++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 3456799999999999999999999999 999999875 68999999999999999999999999999999999988
Q ss_pred cch
Q 001991 435 GGA 437 (985)
Q Consensus 435 k~~ 437 (985)
+..
T Consensus 89 ~~~ 91 (99)
T 2cpd_A 89 VDK 91 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 154
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=5.7e-14 Score=131.70 Aligned_cols=80 Identities=21% Similarity=0.433 Sum_probs=73.1
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~-----~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
...++|||+|||..+++++|+++|++||.|..|+++. ..+|||||+|.+.++|++|+ .|||..|.|++|+|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 4567999999999999999999999999999999974 35789999999999999999 89999999999999999
Q ss_pred cCcchh
Q 001991 433 RPGGAR 438 (985)
Q Consensus 433 ~~k~~R 438 (985)
+++..+
T Consensus 102 ~~~~~~ 107 (114)
T 2cq4_A 102 QAEKNR 107 (114)
T ss_dssp HHHHHH
T ss_pred CCCccC
Confidence 876544
No 155
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.47 E-value=7.3e-14 Score=126.70 Aligned_cols=82 Identities=24% Similarity=0.400 Sum_probs=76.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 350 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk 350 (985)
...+.++|||+|||.++++++|+++|++||.|..+..+++++|||||+|.+.++|++|++.|+|..|.|++|.|.++.++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 45578999999999999999999999999999988667889999999999999999999999999999999999999876
Q ss_pred CC
Q 001991 351 DN 352 (985)
Q Consensus 351 ~~ 352 (985)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 156
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.46 E-value=9.5e-14 Score=129.21 Aligned_cols=83 Identities=19% Similarity=0.390 Sum_probs=75.7
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34556799999999999999999999999999999986 4677999999999999999999999999999999999
Q ss_pred cccCCCCC
Q 001991 345 HYSIPKDN 352 (985)
Q Consensus 345 ~~a~pk~~ 352 (985)
.++.++..
T Consensus 101 ~~a~~~~~ 108 (110)
T 1oo0_B 101 DWCFVKGP 108 (110)
T ss_dssp EESEESSC
T ss_pred EEcccCCC
Confidence 99987643
No 157
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=6.7e-14 Score=128.30 Aligned_cols=76 Identities=14% Similarity=0.224 Sum_probs=71.6
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCc
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 435 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k 435 (985)
..++|||+|||..+++++|+++|++||.|.+|++. ..+|||||+|.+.++|++|++.|||..+.|++|+|.|++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 45799999999999999999999999999999987 46899999999999999999999999999999999999864
No 158
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.46 E-value=8.1e-14 Score=125.26 Aligned_cols=80 Identities=19% Similarity=0.246 Sum_probs=73.5
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC---CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH---KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 434 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~---skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~ 434 (985)
...++|||+|||..+++++|+++|++||.|..|++..+ .++||||+|.+.++|++|++.|||..+.|++|+|.++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 45679999999999999999999999999999988753 478999999999999999999999999999999999987
Q ss_pred cch
Q 001991 435 GGA 437 (985)
Q Consensus 435 k~~ 437 (985)
+..
T Consensus 86 ~~~ 88 (92)
T 2dgv_A 86 ASG 88 (92)
T ss_dssp CSS
T ss_pred CCC
Confidence 653
No 159
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.8e-13 Score=126.31 Aligned_cols=83 Identities=17% Similarity=0.369 Sum_probs=75.3
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----c-cccceEEEEEeCCHHHHHHHHHHccCcccccccc
Q 001991 269 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----A-CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKL 342 (985)
Q Consensus 269 ~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----t-gksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L 342 (985)
+....+.++|||+|||.++++++|+++|++|| |..|++ + ++++|||||+|.+.++|++|+ .|++..|.|++|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 34556789999999999999999999999999 999986 2 678999999999999999999 999999999999
Q ss_pred cccccCCCCCC
Q 001991 343 DIHYSIPKDNP 353 (985)
Q Consensus 343 ~V~~a~pk~~~ 353 (985)
.|.++.++...
T Consensus 87 ~V~~a~~~~~~ 97 (104)
T 1wi8_A 87 RVDVADQAQDK 97 (104)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999887654
No 160
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.46 E-value=1e-13 Score=123.29 Aligned_cols=78 Identities=13% Similarity=0.325 Sum_probs=71.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEec------cccceEEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTA------CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 347 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkit------gksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a 347 (985)
..++|||+|||.++++++|+++|++||.|..+++. ++++|||||+|.+.++|++|++.|+|..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 46899999999999999999999999999999861 238999999999999999999999999999999999999
Q ss_pred CCCC
Q 001991 348 IPKD 351 (985)
Q Consensus 348 ~pk~ 351 (985)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 161
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.46 E-value=4.5e-14 Score=129.98 Aligned_cols=79 Identities=15% Similarity=0.335 Sum_probs=70.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCc--EEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCc----cccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGD--IRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNK----PLRR 339 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~--I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~----~I~G 339 (985)
.+..-.+|||+|||+++|+++|+++|++||. |.+|++ ++++||||||+|.+.++|++|++.|||. .|.|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 3456689999999999999999999999995 556664 5789999999999999999999999997 4899
Q ss_pred ccccccccCC
Q 001991 340 RKLDIHYSIP 349 (985)
Q Consensus 340 r~L~V~~a~p 349 (985)
++|.|.|++.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999863
No 162
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=122.30 Aligned_cols=78 Identities=23% Similarity=0.414 Sum_probs=71.8
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHc-cCcccccccccccccC
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKAL-QNKPLRRRKLDIHYSI 348 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~L-ng~~I~Gr~L~V~~a~ 348 (985)
....+.++|||+|||.++++++|+++|++||+|..|++ .+.+|||||+|.+.++|++|++.| ++..+.|++|.|.|++
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~-~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITV-VQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEE-EGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEE-ECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 34567899999999999999999999999999999998 457899999999999999999989 9999999999999873
No 163
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=124.31 Aligned_cols=81 Identities=20% Similarity=0.379 Sum_probs=74.4
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 349 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~p 349 (985)
....+.++|||+|||.++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|++..|.|+.|.|.++.+
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 345678999999999999999999999999999999983 66999999999999999999999999999999999987
Q ss_pred CCCC
Q 001991 350 KDNP 353 (985)
Q Consensus 350 k~~~ 353 (985)
+...
T Consensus 82 ~~~~ 85 (92)
T 2dgt_A 82 RLRT 85 (92)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7554
No 164
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=4.9e-14 Score=129.54 Aligned_cols=83 Identities=22% Similarity=0.372 Sum_probs=75.5
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
+...++|||+|||..+++++|+++|++||.|..|++..+ ++|||||+|.+.++|++|++.|||..+.|++|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 345679999999999999999999999999999988644 378999999999999999999999999999999999
Q ss_pred ccCcchhh
Q 001991 432 SRPGGARR 439 (985)
Q Consensus 432 A~~k~~Rr 439 (985)
+.++..++
T Consensus 85 a~~~~~~~ 92 (104)
T 1p1t_A 85 AASEKNKE 92 (104)
T ss_dssp TTCTTHHH
T ss_pred CCCccchh
Confidence 99877654
No 165
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.46 E-value=2.4e-13 Score=124.75 Aligned_cols=77 Identities=29% Similarity=0.388 Sum_probs=71.8
Q ss_pred cccccceeeecCCC-CCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCc
Q 001991 357 DANQGTLVVFNLDS-SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 435 (985)
Q Consensus 357 ~~~~~tLfV~NLp~-svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k 435 (985)
....++|||+|||. .+++++|+++|++||.|.+|++. +|||||+|.+.++|++|++.|||..+.|++|+|++++++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 34678999999998 99999999999999999999984 899999999999999999999999999999999999875
Q ss_pred c
Q 001991 436 G 436 (985)
Q Consensus 436 ~ 436 (985)
.
T Consensus 96 ~ 96 (97)
T 2xnq_A 96 A 96 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 166
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.3e-13 Score=127.16 Aligned_cols=80 Identities=21% Similarity=0.335 Sum_probs=72.7
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC------CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 430 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~------skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~ 430 (985)
....++|||+|||..+++++|+++|++|| |..|+++.+ .+|||||+|.+.++|++|+ .||+..|.|++|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34568999999999999999999999999 999998743 4789999999999999999 899999999999999
Q ss_pred eccCcchh
Q 001991 431 ASRPGGAR 438 (985)
Q Consensus 431 ~A~~k~~R 438 (985)
+++++..+
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99987644
No 167
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=3e-13 Score=126.46 Aligned_cols=82 Identities=20% Similarity=0.227 Sum_probs=74.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 4457899999999999999999999999999999876 456789999999999999999999999999999999999
Q ss_pred cCCCCC
Q 001991 347 SIPKDN 352 (985)
Q Consensus 347 a~pk~~ 352 (985)
+.+...
T Consensus 91 a~~~~~ 96 (114)
T 2do0_A 91 DERALP 96 (114)
T ss_dssp CSCCCC
T ss_pred cccCCC
Confidence 875443
No 168
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.1e-13 Score=130.24 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=72.4
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcc
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~ 436 (985)
...++|||+|||..+++++|+++|++||.|..|++.. .++||||+|.+.++|++|++.|||..|.|++|+|+|++...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 3467999999999999999999999999999999875 68999999999999999999999999999999999997643
No 169
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.46 E-value=1.7e-13 Score=129.86 Aligned_cols=82 Identities=24% Similarity=0.444 Sum_probs=75.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 347 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a 347 (985)
..+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|.|.++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456799999999999999999999999999999976 5678899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 001991 348 IPKDNP 353 (985)
Q Consensus 348 ~pk~~~ 353 (985)
.++...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 876543
No 170
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=125.93 Aligned_cols=80 Identities=13% Similarity=0.380 Sum_probs=73.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCcEE-EEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccc----
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGDIR-TIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK---- 341 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~-sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~---- 341 (985)
..+.++|||+|||+++++++|+++|++||+|. .|++ +++++|||||+|.+.++|++|++.||+..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45789999999999999999999999999999 8875 5678899999999999999999999999999999
Q ss_pred ccccccCCCC
Q 001991 342 LDIHYSIPKD 351 (985)
Q Consensus 342 L~V~~a~pk~ 351 (985)
|+|.|+.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999997654
No 171
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=2.3e-13 Score=125.26 Aligned_cols=82 Identities=20% Similarity=0.417 Sum_probs=74.5
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
....+.++|||+|||.++++++|+++|++|| |..|++ +++++|||||+|.+.++|++|+ .|++..|.|++|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 4556789999999999999999999999997 999876 4678999999999999999999 89999999999999
Q ss_pred cccCCCCCC
Q 001991 345 HYSIPKDNP 353 (985)
Q Consensus 345 ~~a~pk~~~ 353 (985)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dng_A 88 DIAEGRKQD 96 (103)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999877654
No 172
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.46 E-value=8.8e-14 Score=126.23 Aligned_cols=82 Identities=28% Similarity=0.619 Sum_probs=74.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHH----HhhcccCcEEEEEe--ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLr----elFs~fG~I~sVki--tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
...++++|||+|||.++++++|+ ++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+.|.|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34578999999999999999999 99999999999987 4578899999999999999999999999999999999
Q ss_pred cccCCCCC
Q 001991 345 HYSIPKDN 352 (985)
Q Consensus 345 ~~a~pk~~ 352 (985)
.++.++..
T Consensus 84 ~~a~~~~~ 91 (97)
T 1nu4_A 84 QYAKTDSD 91 (97)
T ss_dssp EECSSCCT
T ss_pred EEccCCCc
Confidence 99987653
No 173
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=127.29 Aligned_cols=84 Identities=19% Similarity=0.392 Sum_probs=76.3
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
....+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++. ++..|.|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 35567899999999999999999999999999999876 467889999999999999999988 999999999999
Q ss_pred cccCCCCCCC
Q 001991 345 HYSIPKDNPS 354 (985)
Q Consensus 345 ~~a~pk~~~~ 354 (985)
.++.++....
T Consensus 90 ~~a~~~~~~~ 99 (105)
T 2dh8_A 90 KPCTPRGMQP 99 (105)
T ss_dssp CCSCCSSCCT
T ss_pred EEccCCCCCC
Confidence 9998876543
No 174
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.46 E-value=1.6e-13 Score=125.40 Aligned_cols=79 Identities=23% Similarity=0.379 Sum_probs=72.2
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEE--------EEe-----ccccceEEEEEeCCHHHHHHHHHHccCcc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT--------IYT-----ACKHRGFVMISYYDIRAARNAMKALQNKP 336 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~s--------Vki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~ 336 (985)
....+.++|||+|||.++++++|+++|++||.|.. +++ +++++|||||+|.+.++|++|++.|+|..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34567899999999999999999999999999998 765 46789999999999999999999999999
Q ss_pred cccccccccccC
Q 001991 337 LRRRKLDIHYSI 348 (985)
Q Consensus 337 I~Gr~L~V~~a~ 348 (985)
+.|++|+|.+++
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999873
No 175
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.46 E-value=1.6e-13 Score=129.29 Aligned_cols=77 Identities=17% Similarity=0.345 Sum_probs=70.8
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
....++|||+|||.++++++|+++|++||.|.+|++..+ .+|||||+|.+.++|++|++.|||..|+|++|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 445679999999999999999999999999999998754 478999999999999999999999999999999999
Q ss_pred cc
Q 001991 432 SR 433 (985)
Q Consensus 432 A~ 433 (985)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 75
No 176
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.3e-13 Score=122.38 Aligned_cols=76 Identities=20% Similarity=0.340 Sum_probs=70.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 347 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a 347 (985)
.+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|||..|.|+.|++.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46799999999999999999999999999999975 4677999999999999999999999999999999999875
Q ss_pred C
Q 001991 348 I 348 (985)
Q Consensus 348 ~ 348 (985)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 177
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=1e-13 Score=127.00 Aligned_cols=77 Identities=25% Similarity=0.376 Sum_probs=72.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 350 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk 350 (985)
...++|||+|||.++++++|+++|++||.|..+++ .+++|||||+|.+.++|++|++.|+|..+.|++|.|.++.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~-~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKH-YPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEE-ecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 45689999999999999999999999999999998 478999999999999999999999999999999999998764
No 178
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.45 E-value=1.6e-13 Score=132.66 Aligned_cols=80 Identities=21% Similarity=0.370 Sum_probs=73.8
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~-----~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
....++|||+|||.++++++|+++|++||+|..|++.. ..+|||||+|.+.++|++|++.|||..|.|++|+|++
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34567999999999999999999999999999999864 3578999999999999999999999999999999999
Q ss_pred ccCcc
Q 001991 432 SRPGG 436 (985)
Q Consensus 432 A~~k~ 436 (985)
++++.
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 98765
No 179
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=133.15 Aligned_cols=82 Identities=27% Similarity=0.392 Sum_probs=74.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHH----HhhcccCcEEEEEe--ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLr----elFs~fG~I~sVki--tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
...+.++|||+|||+.+++++|+ ++|++||+|..|.+ +++++|||||+|.+.++|++|++.|||..|.|++|.|
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 34568999999999999999876 69999999999987 5688999999999999999999999999999999999
Q ss_pred cccCCCCC
Q 001991 345 HYSIPKDN 352 (985)
Q Consensus 345 ~~a~pk~~ 352 (985)
.|+.++..
T Consensus 105 ~~a~~~~~ 112 (127)
T 2a3j_A 105 TFSETPQS 112 (127)
T ss_dssp EECCCCCH
T ss_pred EEccCcch
Confidence 99987643
No 180
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.1e-13 Score=131.52 Aligned_cols=81 Identities=15% Similarity=0.175 Sum_probs=73.3
Q ss_pred CCCCcEEEEecCCCC-CCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccC--cccccccccccccC
Q 001991 272 EHPSRTLFVRNINSN-VEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN--KPLRRRKLDIHYSI 348 (985)
Q Consensus 272 e~~srtLfVgNLP~~-vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng--~~I~Gr~L~V~~a~ 348 (985)
..++++|||+|||++ +++++|+++|++||+|..|++ .+.||||||+|.+.++|++|++.|++ ..|.|++|+|.|+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL-MRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEE-ecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 567899999999998 999999999999999999998 56799999999999999999998865 56999999999998
Q ss_pred CCCCC
Q 001991 349 PKDNP 353 (985)
Q Consensus 349 pk~~~ 353 (985)
++...
T Consensus 101 ~~~~~ 105 (112)
T 1x4f_A 101 KYKKL 105 (112)
T ss_dssp SCSSS
T ss_pred ccccc
Confidence 76543
No 181
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.45 E-value=6.4e-14 Score=136.43 Aligned_cols=85 Identities=26% Similarity=0.471 Sum_probs=77.2
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccc
Q 001991 269 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 343 (985)
Q Consensus 269 ~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~ 343 (985)
+....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 345567899999999999999999999999999999986 567899999999999999999999999999999999
Q ss_pred ccccCCCCCC
Q 001991 344 IHYSIPKDNP 353 (985)
Q Consensus 344 V~~a~pk~~~ 353 (985)
|.++.++..+
T Consensus 121 V~~a~~~~~~ 130 (135)
T 2lea_A 121 VQMARYGRPP 130 (135)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999876554
No 182
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.4e-13 Score=127.82 Aligned_cols=83 Identities=25% Similarity=0.394 Sum_probs=75.3
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
..+.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.+++ .|.|++|.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 45667899999999999999999999999999999986 467899999999999999999999998 899999999
Q ss_pred cccCCCCCC
Q 001991 345 HYSIPKDNP 353 (985)
Q Consensus 345 ~~a~pk~~~ 353 (985)
.++.++..+
T Consensus 91 ~~a~~~~~~ 99 (116)
T 2cqd_A 91 NLAYLGAKP 99 (116)
T ss_dssp EESTTTCCC
T ss_pred EEcccCCCc
Confidence 999776544
No 183
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.45 E-value=1.7e-13 Score=128.20 Aligned_cols=81 Identities=27% Similarity=0.357 Sum_probs=73.9
Q ss_pred ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 001991 356 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 430 (985)
Q Consensus 356 ~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~ 430 (985)
.....++|||+|||..+++++|+++|++||.|..|++..+ ++|||||+|.+.++|++|++.|||..|.|++|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456679999999999999999999999999999998643 46899999999999999999999999999999999
Q ss_pred eccCcc
Q 001991 431 ASRPGG 436 (985)
Q Consensus 431 ~A~~k~ 436 (985)
+++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998764
No 184
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=125.45 Aligned_cols=79 Identities=18% Similarity=0.246 Sum_probs=70.9
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEE-cCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCc
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 435 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri-~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k 435 (985)
....++|||+|||..+++++|+++|++||.|. +++ ....+|||||+|.+.++|++|++.|||..|.|++|+|.+++++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 34567999999999999999999999999996 443 3457899999999999999999999999999999999999876
Q ss_pred c
Q 001991 436 G 436 (985)
Q Consensus 436 ~ 436 (985)
.
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 185
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.45 E-value=1.3e-13 Score=131.32 Aligned_cols=82 Identities=23% Similarity=0.387 Sum_probs=74.7
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
....++|||+|||..+++++|+++|++||.|..|+++.+ ++|||||+|.+.++|++|++.|||..|.|++|+|++
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 345679999999999999999999999999999998755 388999999999999999999999999999999999
Q ss_pred ccCcchh
Q 001991 432 SRPGGAR 438 (985)
Q Consensus 432 A~~k~~R 438 (985)
+.++..+
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9876543
No 186
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.4e-13 Score=128.65 Aligned_cols=84 Identities=23% Similarity=0.352 Sum_probs=75.9
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEE--------EEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIR--------TIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKP 336 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~--------sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~ 336 (985)
....+.++|||+|||.++++++|+++|++||.|. .|++ +++++|||||+|.+.++|++|++.|++..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3556789999999999999999999999999998 4665 46789999999999999999999999999
Q ss_pred cccccccccccCCCCCC
Q 001991 337 LRRRKLDIHYSIPKDNP 353 (985)
Q Consensus 337 I~Gr~L~V~~a~pk~~~ 353 (985)
|.|++|.|.++.++...
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999887654
No 187
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.45 E-value=4.9e-14 Score=129.87 Aligned_cols=78 Identities=13% Similarity=0.184 Sum_probs=71.8
Q ss_pred cccceeeecCCC------CCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEEcCHHHHHHHHHHhCCceeCC-ce
Q 001991 359 NQGTLVVFNLDS------SVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAG-KQ 426 (985)
Q Consensus 359 ~~~tLfV~NLp~------svTeedLrelFs~fG~I~~Vri~~-----~skGfaFVeF~d~edA~kAI~~LNG~~I~G-r~ 426 (985)
..++|||+|||. ++++++|+++|++||.|.+|+++. .++|||||+|.+.++|++|++.|||..|.| ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 356899999999 999999999999999999999874 357999999999999999999999999999 99
Q ss_pred EEEEeccCcc
Q 001991 427 IKLEASRPGG 436 (985)
Q Consensus 427 IkV~~A~~k~ 436 (985)
|+|.++.+++
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999998744
No 188
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=5.9e-14 Score=128.96 Aligned_cols=81 Identities=25% Similarity=0.460 Sum_probs=74.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
+.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 345689999999999999999999999999999876 467799999999999999999999999999999999999
Q ss_pred cCCCCC
Q 001991 347 SIPKDN 352 (985)
Q Consensus 347 a~pk~~ 352 (985)
+.++..
T Consensus 85 a~~~~~ 90 (104)
T 1p1t_A 85 AASEKN 90 (104)
T ss_dssp TTCTTH
T ss_pred CCCccc
Confidence 987643
No 189
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.45 E-value=8.1e-14 Score=126.78 Aligned_cols=73 Identities=21% Similarity=0.294 Sum_probs=69.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 347 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a 347 (985)
.+.-|||+||++.+||++|+++|.+||+|.++++ ..+||||||+|.+.++|++|++.||+..+.|++|+|+++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l-~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHP-YLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEE-cCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4678999999999999999999999999999998 558999999999999999999999999999999999887
No 190
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.45 E-value=2.1e-13 Score=132.09 Aligned_cols=84 Identities=20% Similarity=0.402 Sum_probs=77.0
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 35567799999999999999999999999999999976 4678999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 001991 345 HYSIPKDNP 353 (985)
Q Consensus 345 ~~a~pk~~~ 353 (985)
.++.++..+
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999887654
No 191
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=9.3e-14 Score=127.83 Aligned_cols=82 Identities=21% Similarity=0.251 Sum_probs=75.0
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhc-cCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCce-eCCceEEEEe
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGI-YGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSD-VAGKQIKLEA 431 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~-fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~-I~Gr~IkV~~ 431 (985)
....+|||+|||..+++++|+++|++ ||.|.+|+++.+ ++|||||+|.+.++|++|++.|||.. |.|++|+|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 45679999999999999999999999 999999998654 57899999999999999999999999 9999999999
Q ss_pred ccCcchhh
Q 001991 432 SRPGGARR 439 (985)
Q Consensus 432 A~~k~~Rr 439 (985)
+.++..++
T Consensus 87 a~~~~~~~ 94 (104)
T 2dhg_A 87 AIPKASRV 94 (104)
T ss_dssp CCCCCSCC
T ss_pred ccCCCcCC
Confidence 98876543
No 192
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.45 E-value=1.7e-13 Score=129.13 Aligned_cols=79 Identities=18% Similarity=0.341 Sum_probs=72.5
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|||..|.|++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 45567899999999999999999999999999999986 4677999999999999999999999999999999999
Q ss_pred cccC
Q 001991 345 HYSI 348 (985)
Q Consensus 345 ~~a~ 348 (985)
.+++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9863
No 193
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.9e-13 Score=125.33 Aligned_cols=83 Identities=19% Similarity=0.398 Sum_probs=74.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 349 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~p 349 (985)
...+.++|||+|||.++++++|+++|++||.|..++. +++++|||||+|.+.++|++|++.|++..|.|+.|.|.++.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 4567899999999999999999999999999954443 677899999999999999999999999999999999999988
Q ss_pred CCCC
Q 001991 350 KDNP 353 (985)
Q Consensus 350 k~~~ 353 (985)
+...
T Consensus 91 ~~~~ 94 (101)
T 2fc9_A 91 RGSP 94 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 194
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.45 E-value=5.9e-14 Score=129.34 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=72.6
Q ss_pred CCCcEEEEecCCC------CCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccc-c
Q 001991 273 HPSRTLFVRNINS------NVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRR-R 340 (985)
Q Consensus 273 ~~srtLfVgNLP~------~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~G-r 340 (985)
...++|||+|||. ++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|||..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 9999999999999999999986 47899999999999999999999999999999 9
Q ss_pred cccccccCCC
Q 001991 341 KLDIHYSIPK 350 (985)
Q Consensus 341 ~L~V~~a~pk 350 (985)
.|.|.++.++
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998754
No 195
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.1e-13 Score=129.51 Aligned_cols=82 Identities=22% Similarity=0.414 Sum_probs=74.8
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe---ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 269 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 269 ~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki---tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
.....+.++|||+|||.++++++|+++|++||+|..|++ .+.++|||||+|.+.++|++|++.|+|..|.|++|.|.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345567899999999999999999999999999999987 34578999999999999999999999999999999999
Q ss_pred ccCCC
Q 001991 346 YSIPK 350 (985)
Q Consensus 346 ~a~pk 350 (985)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99765
No 196
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.44 E-value=1.1e-13 Score=125.58 Aligned_cols=81 Identities=23% Similarity=0.333 Sum_probs=73.5
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcc
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~ 436 (985)
....++|||+|||..+++++|+++|++||.|..+.....++|||||+|.+.++|++|++.|||..|.|++|+|.+++++.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 44668999999999999999999999999998885555578999999999999999999999999999999999998765
Q ss_pred h
Q 001991 437 A 437 (985)
Q Consensus 437 ~ 437 (985)
.
T Consensus 93 ~ 93 (96)
T 1fjc_A 93 G 93 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 197
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2e-13 Score=124.50 Aligned_cols=81 Identities=22% Similarity=0.291 Sum_probs=72.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 350 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk 350 (985)
.....++|||+|||.++++++|+++|++||.|....++++++|||||+|.+.++|++|++.|||..|.|++|.|.++.++
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 34567899999999999999999999999999633345788999999999999999999999999999999999999876
Q ss_pred C
Q 001991 351 D 351 (985)
Q Consensus 351 ~ 351 (985)
.
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 198
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.44 E-value=1.9e-13 Score=121.98 Aligned_cols=76 Identities=28% Similarity=0.388 Sum_probs=70.4
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecc
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 433 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~ 433 (985)
..++|||+|||..+++++|+++|++||.|..|++..+ ++|||||+|.+.++|++|+ .|||..+.|++|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4579999999999999999999999999999988644 4889999999999999999 899999999999999998
Q ss_pred Cc
Q 001991 434 PG 435 (985)
Q Consensus 434 ~k 435 (985)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 199
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=1.9e-13 Score=128.16 Aligned_cols=81 Identities=19% Similarity=0.283 Sum_probs=73.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHH---HhhcccCcEEEEEec--------cccceEEEEEeCCHHHHHHHHHHccCccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELK---ALFEQFGDIRTIYTA--------CKHRGFVMISYYDIRAARNAMKALQNKPLRR 339 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLr---elFs~fG~I~sVkit--------gksrGfAFV~F~d~esA~kAi~~Lng~~I~G 339 (985)
.....++|||+|||+++++++|+ ++|++||+|..|++. ++++|||||+|.+.++|++|++.||+..|.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 44567899999999999999999 999999999999862 2456999999999999999999999999999
Q ss_pred ccccccccCCCC
Q 001991 340 RKLDIHYSIPKD 351 (985)
Q Consensus 340 r~L~V~~a~pk~ 351 (985)
++|.|.++.++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998775
No 200
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.44 E-value=1.8e-13 Score=130.31 Aligned_cols=84 Identities=18% Similarity=0.448 Sum_probs=76.6
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
....+.++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34556799999999999999999999999999999986 5677999999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 001991 345 HYSIPKDNP 353 (985)
Q Consensus 345 ~~a~pk~~~ 353 (985)
.++.++...
T Consensus 97 ~~a~~~~~~ 105 (126)
T 3ex7_B 97 DWCFVRGPP 105 (126)
T ss_dssp EESEESSSC
T ss_pred EEecCCCCC
Confidence 999876544
No 201
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.3e-13 Score=127.91 Aligned_cols=80 Identities=23% Similarity=0.294 Sum_probs=73.3
Q ss_pred ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 001991 356 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 430 (985)
Q Consensus 356 ~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~ 430 (985)
.+...++|||+|||..+++++|+++|++||.|..|++..+ +++||||+|.+.++|++|++.||+ .|.|++|+|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 4456789999999999999999999999999999999764 578999999999999999999998 8999999999
Q ss_pred eccCcc
Q 001991 431 ASRPGG 436 (985)
Q Consensus 431 ~A~~k~ 436 (985)
++.++.
T Consensus 92 ~a~~~~ 97 (116)
T 2cqd_A 92 LAYLGA 97 (116)
T ss_dssp ESTTTC
T ss_pred EcccCC
Confidence 998754
No 202
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.44 E-value=2.6e-13 Score=125.15 Aligned_cols=80 Identities=26% Similarity=0.520 Sum_probs=73.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 350 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk 350 (985)
...+.++|||+|||.++++++|+++|++||.|..|++ .++||||+|.+.++|++|++.|++..|.|++|.|.++.++
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~---~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKK---LKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEE---CSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE---ECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 3456799999999999999999999999999999988 3789999999999999999999999999999999999887
Q ss_pred CCC
Q 001991 351 DNP 353 (985)
Q Consensus 351 ~~~ 353 (985)
...
T Consensus 84 ~~~ 86 (103)
T 2dgu_A 84 DQK 86 (103)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 203
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.7e-13 Score=126.79 Aligned_cols=79 Identities=16% Similarity=0.183 Sum_probs=72.6
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecc
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 433 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~ 433 (985)
...++|||+|||..+++++|+++|++||.|.+|++..+ .++||||+|.+.++|++|++.|||..|.|++|+|.+++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 45679999999999999999999999999999988754 36799999999999999999999999999999999997
Q ss_pred Ccc
Q 001991 434 PGG 436 (985)
Q Consensus 434 ~k~ 436 (985)
...
T Consensus 93 ~~~ 95 (114)
T 2do0_A 93 RAL 95 (114)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
No 204
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.44 E-value=2.3e-13 Score=125.89 Aligned_cols=79 Identities=24% Similarity=0.421 Sum_probs=72.9
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
....+.++|||+|||+.+++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999876 56789999999999999999999999999999999999
Q ss_pred ccC
Q 001991 346 YSI 348 (985)
Q Consensus 346 ~a~ 348 (985)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 874
No 205
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.44 E-value=2e-13 Score=123.87 Aligned_cols=81 Identities=21% Similarity=0.411 Sum_probs=74.1
Q ss_pred ccccceeeecCCCCCCHHHHH----HHhhccCCEEEEEEcC--CCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 358 ANQGTLVVFNLDSSVSTEELH----QIFGIYGEIREIRDTQ--HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLr----elFs~fG~I~~Vri~~--~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
.+.++|||+|||..+++++|+ ++|++||.|..|++.. ..+|||||+|.+.++|++|++.|||..+.|++|+|.+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 85 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456799999999999999999 9999999999999863 3579999999999999999999999999999999999
Q ss_pred ccCcchh
Q 001991 432 SRPGGAR 438 (985)
Q Consensus 432 A~~k~~R 438 (985)
++++...
T Consensus 86 a~~~~~~ 92 (97)
T 1nu4_A 86 AKTDSDI 92 (97)
T ss_dssp CSSCCTH
T ss_pred ccCCCcc
Confidence 9987644
No 206
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=2.5e-13 Score=131.51 Aligned_cols=82 Identities=15% Similarity=0.251 Sum_probs=73.8
Q ss_pred ccccceeeecCCCCCCHHHHH----HHhhccCCEEEEEEcC--CCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 358 ANQGTLVVFNLDSSVSTEELH----QIFGIYGEIREIRDTQ--HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLr----elFs~fG~I~~Vri~~--~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
.+.++|||+|||..+++++|+ ++|++||.|.+|.+.. .++|||||+|.+.++|.+|++.|||..|.|++|+|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 446799999999999999876 6999999999998864 4789999999999999999999999999999999999
Q ss_pred ccCcchhh
Q 001991 432 SRPGGARR 439 (985)
Q Consensus 432 A~~k~~Rr 439 (985)
++++..+.
T Consensus 107 a~~~~~~~ 114 (127)
T 2a3j_A 107 SETPQSQV 114 (127)
T ss_dssp CCCCCHHH
T ss_pred ccCcchhc
Confidence 99876543
No 207
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.1e-13 Score=127.53 Aligned_cols=82 Identities=20% Similarity=0.328 Sum_probs=74.3
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEE--------EEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeC
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIR--------EIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVA 423 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~--------~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~ 423 (985)
....++|||+|||..+++++|+++|++||.|. .|++..+ .+|||||+|.+.++|++|++.|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45678999999999999999999999999998 5888654 4789999999999999999999999999
Q ss_pred CceEEEEeccCcchh
Q 001991 424 GKQIKLEASRPGGAR 438 (985)
Q Consensus 424 Gr~IkV~~A~~k~~R 438 (985)
|++|+|.+++++..+
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999987643
No 208
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.44 E-value=1.8e-13 Score=129.68 Aligned_cols=79 Identities=25% Similarity=0.415 Sum_probs=73.0
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecc
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 433 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~ 433 (985)
...++|||+|||.++++++|+++|++||.|..|++..+ .+|||||+|.+.++|++|++.|||..|.|++|+|++++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 34579999999999999999999999999999998754 47899999999999999999999999999999999998
Q ss_pred Ccc
Q 001991 434 PGG 436 (985)
Q Consensus 434 ~k~ 436 (985)
++.
T Consensus 85 ~~~ 87 (116)
T 2fy1_A 85 KPS 87 (116)
T ss_dssp CSS
T ss_pred CCC
Confidence 765
No 209
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.43 E-value=4.4e-14 Score=127.32 Aligned_cols=77 Identities=16% Similarity=0.168 Sum_probs=65.5
Q ss_pred cceeeecCCCCCCHHHHHHHhhccC--CEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecc
Q 001991 361 GTLVVFNLDSSVSTEELHQIFGIYG--EIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 433 (985)
Q Consensus 361 ~tLfV~NLp~svTeedLrelFs~fG--~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~ 433 (985)
.+|||+|||.++++++|+++|++|| .|.+|+++.+ ++|||||+|.+.++|++|++.|||..+.|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 9999988653 47899999999999999999999999999999999998
Q ss_pred Ccch
Q 001991 434 PGGA 437 (985)
Q Consensus 434 ~k~~ 437 (985)
++..
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7653
No 210
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=4.8e-13 Score=122.30 Aligned_cols=80 Identities=21% Similarity=0.402 Sum_probs=73.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhccc--CcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQF--GDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 348 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~f--G~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~ 348 (985)
...+.++|||+|||.++++++|+++|++| |.|..|++ .+|||||+|.+.++|++|++.|++..|.|++|.|.++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE---CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE---eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 44578999999999999999999999999 99999987 57899999999999999999999999999999999998
Q ss_pred CCCCC
Q 001991 349 PKDNP 353 (985)
Q Consensus 349 pk~~~ 353 (985)
++...
T Consensus 88 ~~~~~ 92 (99)
T 2cpd_A 88 PVDKD 92 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77543
No 211
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.43 E-value=2.4e-13 Score=124.26 Aligned_cols=77 Identities=21% Similarity=0.317 Sum_probs=70.7
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEE--------EEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeC
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE--------IRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVA 423 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~--------Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~ 423 (985)
....++|||+|||.++++++|+++|++||.|.+ |++..+ .+|||||+|.+.++|++|++.|||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 455789999999999999999999999999998 888654 4689999999999999999999999999
Q ss_pred CceEEEEecc
Q 001991 424 GKQIKLEASR 433 (985)
Q Consensus 424 Gr~IkV~~A~ 433 (985)
|++|+|++|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999974
No 212
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=2.8e-13 Score=121.76 Aligned_cols=80 Identities=18% Similarity=0.372 Sum_probs=73.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 350 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk 350 (985)
...+.++|||+|||.++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|++..+.|++|.|.++.++
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 34567999999999999999999999999999999983 669999999999999999999999999999999999876
Q ss_pred CCC
Q 001991 351 DNP 353 (985)
Q Consensus 351 ~~~ 353 (985)
...
T Consensus 82 ~~~ 84 (90)
T 2dnp_A 82 QKK 84 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 213
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.43 E-value=3.3e-13 Score=124.29 Aligned_cols=80 Identities=18% Similarity=0.251 Sum_probs=72.2
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
....++|||+|||..+++++|+++|++|| |..|+++.+ .+|||||+|.+.++|++|+ .|||..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34567999999999999999999999997 999998754 3689999999999999999 7999999999999999
Q ss_pred ccCcchh
Q 001991 432 SRPGGAR 438 (985)
Q Consensus 432 A~~k~~R 438 (985)
++++..+
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9886543
No 214
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.8e-13 Score=126.81 Aligned_cols=83 Identities=20% Similarity=0.384 Sum_probs=74.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcE----EEEEe-ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDI----RTIYT-ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I----~sVki-tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
...+.++|||+|||.++|+++|+++|++||.| ..+++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34578999999999999999999999999998 45543 78899999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 001991 346 YSIPKDNP 353 (985)
Q Consensus 346 ~a~pk~~~ 353 (985)
++.++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99887654
No 215
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.43 E-value=1.8e-13 Score=132.04 Aligned_cols=84 Identities=17% Similarity=0.364 Sum_probs=75.4
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEE--EEe-----ccccceEEEEEeCCHHHHHHHHHHccCc----cc
Q 001991 269 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT--IYT-----ACKHRGFVMISYYDIRAARNAMKALQNK----PL 337 (985)
Q Consensus 269 ~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~s--Vki-----tgksrGfAFV~F~d~esA~kAi~~Lng~----~I 337 (985)
+....+.++|||+|||+++|+++|+++|++||.|.. |++ +++++|||||+|.+. +|.+|++.|++. .|
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 345567899999999999999999999999999966 654 678999999999999 999999999999 99
Q ss_pred ccccccccccCCCCCC
Q 001991 338 RRRKLDIHYSIPKDNP 353 (985)
Q Consensus 338 ~Gr~L~V~~a~pk~~~ 353 (985)
.|++|.|.++.++...
T Consensus 96 ~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 96 DGKTINVEFAKGSKRD 111 (131)
T ss_dssp GGCCCCCEECCCSCCC
T ss_pred CCEEEEEEECCCCCCC
Confidence 9999999999886543
No 216
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=5.8e-13 Score=124.67 Aligned_cols=80 Identities=16% Similarity=0.316 Sum_probs=71.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCccc--------c
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPL--------R 338 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I--------~ 338 (985)
.+.+.++|||+|||.++++++|+++|++||+|..|++ ++.++|||||+|.+.++|++|++.|||..| .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4557799999999999999999999999999999976 467899999999999999999999999999 5
Q ss_pred cccccccccCCC
Q 001991 339 RRKLDIHYSIPK 350 (985)
Q Consensus 339 Gr~L~V~~a~pk 350 (985)
+++|.|.|+.|+
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 677888888754
No 217
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.43 E-value=1.7e-13 Score=124.92 Aligned_cols=77 Identities=29% Similarity=0.407 Sum_probs=71.4
Q ss_pred ccccceeeecCCC-CCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcc
Q 001991 358 ANQGTLVVFNLDS-SVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 358 ~~~~tLfV~NLp~-svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~ 436 (985)
.+.++|||+|||. .+++++|+++|++||.|..|++. +|||||+|.+.++|++|++.|||..+.|++|+|++++++.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 4577999999998 99999999999999999999984 7999999999999999999999999999999999998765
Q ss_pred h
Q 001991 437 A 437 (985)
Q Consensus 437 ~ 437 (985)
.
T Consensus 85 ~ 85 (96)
T 2kvi_A 85 R 85 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 218
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3.7e-13 Score=123.40 Aligned_cols=83 Identities=22% Similarity=0.442 Sum_probs=75.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe--ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT--ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 348 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki--tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~ 348 (985)
...+.++|||+|||.++++++|+++|+.|+.|..+.. +++++|||||+|.+.++|++|++.|++..|.|+.|.|.++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 4567899999999999999999999999988777753 67889999999999999999999999999999999999998
Q ss_pred CCCCC
Q 001991 349 PKDNP 353 (985)
Q Consensus 349 pk~~~ 353 (985)
++...
T Consensus 91 ~~~~~ 95 (102)
T 2fc8_A 91 PKGEG 95 (102)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87654
No 219
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.43 E-value=2.5e-13 Score=126.06 Aligned_cols=80 Identities=16% Similarity=0.308 Sum_probs=73.2
Q ss_pred CCCCCcEEEEecCCCCC------CHHHHHHhhcccCcEEEEEe---ccccceEEEEEeCCHHHHHHHHHHccCcccccc-
Q 001991 271 GEHPSRTLFVRNINSNV------EDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRR- 340 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~v------TEedLrelFs~fG~I~sVki---tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr- 340 (985)
.....++|||+|||..+ ++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|||..|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 44567999999999999 78999999999999999987 567899999999999999999999999999999
Q ss_pred cccccccCCC
Q 001991 341 KLDIHYSIPK 350 (985)
Q Consensus 341 ~L~V~~a~pk 350 (985)
+|.|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998654
No 220
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.43 E-value=2e-13 Score=124.42 Aligned_cols=80 Identities=24% Similarity=0.392 Sum_probs=72.2
Q ss_pred CCCCCcEEEEecCCC-CCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001991 271 GEHPSRTLFVRNINS-NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 349 (985)
Q Consensus 271 ~e~~srtLfVgNLP~-~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~p 349 (985)
...+.++|||+|||. ++++++|+++|++||+|..|++ .+|||||+|.+.++|++|++.|++..+.|++|.|.++.+
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE---ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 345789999999998 9999999999999999999998 489999999999999999999999999999999999987
Q ss_pred CCCC
Q 001991 350 KDNP 353 (985)
Q Consensus 350 k~~~ 353 (985)
+..+
T Consensus 83 ~~~~ 86 (96)
T 2kvi_A 83 NARP 86 (96)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 6544
No 221
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=4.9e-13 Score=124.61 Aligned_cols=81 Identities=14% Similarity=0.206 Sum_probs=73.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCccccc-----cccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRR-----RKLDIH 345 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~G-----r~L~V~ 345 (985)
.....++|||+|||.++++++|+++|++||+|..|++... |||||+|.+.++|++||+.||+..|.| +.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 3456799999999999999999999999999999988333 999999999999999999999999999 999999
Q ss_pred ccCCCCCC
Q 001991 346 YSIPKDNP 353 (985)
Q Consensus 346 ~a~pk~~~ 353 (985)
++.++...
T Consensus 89 ~a~~~~~~ 96 (108)
T 1x4c_A 89 VDGPRSPS 96 (108)
T ss_dssp ESSCCSCC
T ss_pred eCCCCCCC
Confidence 99887644
No 222
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.43 E-value=2e-13 Score=125.56 Aligned_cols=79 Identities=19% Similarity=0.396 Sum_probs=69.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe------ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT------ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki------tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
.....++|||+|||.++++++|+++|++|| |..|++ +++++|||||+|.+.++|++|+ .|+|..|.|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 455679999999999999999999999999 999986 4667999999999999999999 89999999999999
Q ss_pred cccCCCC
Q 001991 345 HYSIPKD 351 (985)
Q Consensus 345 ~~a~pk~ 351 (985)
.++.++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9998754
No 223
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.43 E-value=5.3e-14 Score=133.67 Aligned_cols=78 Identities=21% Similarity=0.336 Sum_probs=71.2
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
...++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|+ .|||..|.|++|+|.++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 34679999999999999999999999999999988643 5789999999999999999 79999999999999999
Q ss_pred cCcc
Q 001991 433 RPGG 436 (985)
Q Consensus 433 ~~k~ 436 (985)
++..
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8644
No 224
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.8e-13 Score=123.66 Aligned_cols=81 Identities=15% Similarity=0.274 Sum_probs=72.8
Q ss_pred CCCcEEEEecCCCCCCHHHHH----HhhcccCcEEEEEec--cccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 273 HPSRTLFVRNINSNVEDSELK----ALFEQFGDIRTIYTA--CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLr----elFs~fG~I~sVkit--gksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
...++|||+|||.++++++|+ ++|++||+|..|++. ...+|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356899999999999999999 999999999999872 22289999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 001991 347 SIPKDNP 353 (985)
Q Consensus 347 a~pk~~~ 353 (985)
+.++..+
T Consensus 87 a~~~~~~ 93 (96)
T 2dgx_A 87 ATGASGP 93 (96)
T ss_dssp CCCSSCC
T ss_pred cCCCCCC
Confidence 9876543
No 225
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.43 E-value=3.1e-13 Score=131.57 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=71.4
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcE-EEEEEcCHHHHHHHHHHhCCceeCC--ceEEEEeccCcc
Q 001991 361 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNH-KFIEFYDIRAAETALRTLNRSDVAG--KQIKLEASRPGG 436 (985)
Q Consensus 361 ~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGf-aFVeF~d~edA~kAI~~LNG~~I~G--r~IkV~~A~~k~ 436 (985)
-.|||+||+..+|+++|+++|++||+|.+|++..+.++| |||+|.+.++|++|++.|||..|.| ++|+|+|++++.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 468899999999999999999999999999988777888 9999999999999999999999988 999999999864
No 226
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.3e-13 Score=124.47 Aligned_cols=79 Identities=24% Similarity=0.314 Sum_probs=70.9
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCC-EEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCC-ceeCCceEEEEeccCc
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGE-IREIRDTQHKHNHKFIEFYDIRAAETALRTLNR-SDVAGKQIKLEASRPG 435 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~-I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG-~~I~Gr~IkV~~A~~k 435 (985)
...++|||+|||.++++++|+++|++||. |..+.+. +++||||+|.+.++|++|++.||| ..|.|++|+|.+++++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL--KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE--ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc--CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 35679999999999999999999999999 6655553 589999999999999999999999 9999999999999987
Q ss_pred chh
Q 001991 436 GAR 438 (985)
Q Consensus 436 ~~R 438 (985)
..+
T Consensus 84 ~~~ 86 (93)
T 2cqh_A 84 KLR 86 (93)
T ss_dssp CCC
T ss_pred ccc
Confidence 644
No 227
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=6.7e-13 Score=121.04 Aligned_cols=77 Identities=22% Similarity=0.375 Sum_probs=71.1
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcch
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 437 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~~ 437 (985)
...++|||+|| ++++++|+++|++||.|..|++. ..++||||+|.+.++|++|++.|||..|.|++|+|.+++++..
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 45679999996 89999999999999999999985 5789999999999999999999999999999999999988654
No 228
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.42 E-value=2e-13 Score=120.42 Aligned_cols=70 Identities=19% Similarity=0.385 Sum_probs=65.4
Q ss_pred CcEEEEecCCCCC------CHHHHHHhhcccCcEEEEEe---ccccceEEEEEeCCHHHHHHHHHHccCcccccc-cccc
Q 001991 275 SRTLFVRNINSNV------EDSELKALFEQFGDIRTIYT---ACKHRGFVMISYYDIRAARNAMKALQNKPLRRR-KLDI 344 (985)
Q Consensus 275 srtLfVgNLP~~v------TEedLrelFs~fG~I~sVki---tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr-~L~V 344 (985)
+++|||+|||..+ ++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|||..|.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4789999999999 77999999999999999986 567899999999999999999999999999999 8887
No 229
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.42 E-value=6.9e-13 Score=126.30 Aligned_cols=80 Identities=16% Similarity=0.258 Sum_probs=73.5
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
....++|||+|||..+++++|+++|++||.|..|++..+ .+|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 345679999999999999999999999999999998754 5789999999999999999999999999999999999
Q ss_pred cCcc
Q 001991 433 RPGG 436 (985)
Q Consensus 433 ~~k~ 436 (985)
.+..
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 8754
No 230
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.42 E-value=2.5e-13 Score=121.16 Aligned_cols=76 Identities=22% Similarity=0.454 Sum_probs=70.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 348 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~ 348 (985)
..++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|+ .|++..+.|++|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3589999999999999999999999999999976 5678999999999999999999 899999999999999987
Q ss_pred CC
Q 001991 349 PK 350 (985)
Q Consensus 349 pk 350 (985)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 231
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=3.5e-13 Score=125.52 Aligned_cols=82 Identities=15% Similarity=0.310 Sum_probs=74.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 350 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk 350 (985)
.....++|||+|||.++++++|+++|++||.|..|++. ..+|||||+|.+.++|++|++.|++..|.|+.|.|.++.++
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF-PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 34567999999999999999999999999999999983 34899999999999999999999999999999999999876
Q ss_pred CCC
Q 001991 351 DNP 353 (985)
Q Consensus 351 ~~~ 353 (985)
...
T Consensus 100 ~~~ 102 (109)
T 1x4g_A 100 PDM 102 (109)
T ss_dssp CSS
T ss_pred CCC
Confidence 544
No 232
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.42 E-value=4.3e-13 Score=132.68 Aligned_cols=81 Identities=23% Similarity=0.303 Sum_probs=74.1
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
...++|||+|||..+++++|+++|++||.|..|+++.+ .++||||+|.+.++|++||+.||+..|.|++|+|+|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45679999999999999999999999999999998644 4689999999999999999999999999999999999
Q ss_pred cCcchh
Q 001991 433 RPGGAR 438 (985)
Q Consensus 433 ~~k~~R 438 (985)
+++..+
T Consensus 117 ~~~~~~ 122 (156)
T 1h2v_Z 117 AGFKEG 122 (156)
T ss_dssp SCCCTT
T ss_pred CCCCCc
Confidence 876543
No 233
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.42 E-value=3.8e-13 Score=123.34 Aligned_cols=77 Identities=25% Similarity=0.396 Sum_probs=71.8
Q ss_pred CCCCCcEEEEecCCC-CCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001991 271 GEHPSRTLFVRNINS-NVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 349 (985)
Q Consensus 271 ~e~~srtLfVgNLP~-~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~p 349 (985)
...+.++|||+|||. ++++++|+++|++||.|..|++ .+|||||+|.+.++|++|++.|+|..+.|++|.|.++.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 455789999999998 9999999999999999999998 489999999999999999999999999999999999876
Q ss_pred C
Q 001991 350 K 350 (985)
Q Consensus 350 k 350 (985)
+
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 234
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.42 E-value=3.9e-13 Score=124.29 Aligned_cols=76 Identities=20% Similarity=0.349 Sum_probs=70.6
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecc
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 433 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~ 433 (985)
...++|||+|||..+++++|+++|++||.|.+|++..+ .+|||||+|.+.++|++|++.|||..|.|++|+|.++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 45679999999999999999999999999999988744 47899999999999999999999999999999999985
No 235
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.42 E-value=2.3e-13 Score=127.43 Aligned_cols=81 Identities=26% Similarity=0.517 Sum_probs=73.2
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001991 269 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 348 (985)
Q Consensus 269 ~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~ 348 (985)
...+.+.++|||+|||.++++++|+++|++||.|..|++. +|||||+|.+.++|++|++.|+|..|.|+.|.|.++.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 3456678999999999999999999999999999999984 8999999999999999999999999999999999998
Q ss_pred CCCC
Q 001991 349 PKDN 352 (985)
Q Consensus 349 pk~~ 352 (985)
++..
T Consensus 102 ~~~~ 105 (108)
T 2jvo_A 102 LPAK 105 (108)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 7654
No 236
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=1.5e-13 Score=129.19 Aligned_cols=77 Identities=13% Similarity=0.279 Sum_probs=71.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 350 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk 350 (985)
...++|||+|||.++++++|+++|++||.|..|.+ .+.+|||||+|.+.++|++|++.|||..|.|++|.|.|+...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLL-PEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC-CSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 35689999999999999999999999999999998 468999999999999999999999999999999999998653
No 237
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.6e-13 Score=123.85 Aligned_cols=80 Identities=20% Similarity=0.351 Sum_probs=72.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCc-EEEEEeccccceEEEEEeCCHHHHHHHHHHccC-cccccccccccccCC
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGD-IRTIYTACKHRGFVMISYYDIRAARNAMKALQN-KPLRRRKLDIHYSIP 349 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~-I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng-~~I~Gr~L~V~~a~p 349 (985)
..+.++|||+|||.++++++|+++|++||. |..+.+ .++|||||+|.+.++|++|++.||+ ..|.|++|.|.++.+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 346789999999999999999999999999 666665 5689999999999999999999999 999999999999988
Q ss_pred CCCC
Q 001991 350 KDNP 353 (985)
Q Consensus 350 k~~~ 353 (985)
+...
T Consensus 83 ~~~~ 86 (93)
T 2cqh_A 83 KKLR 86 (93)
T ss_dssp CCCC
T ss_pred cccc
Confidence 7654
No 238
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.42 E-value=3.2e-13 Score=120.25 Aligned_cols=76 Identities=21% Similarity=0.414 Sum_probs=69.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
.+.+.++|||+|||+++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++ +++..|.|++|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 4567899999999999999999999999999999976 47789999999999999999995 68889999999998
Q ss_pred cc
Q 001991 346 YS 347 (985)
Q Consensus 346 ~a 347 (985)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 65
No 239
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.42 E-value=3.3e-13 Score=126.53 Aligned_cols=80 Identities=26% Similarity=0.380 Sum_probs=73.2
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC--CCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcc
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ--HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~--~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~ 436 (985)
..++|||+|||..+++++|+++|++||.|..|++.. ..+|||||+|.+.++|.+|++.|||..+.|+.|+|.++.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANR 86 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCh
Confidence 457999999999999999999999999999999864 357999999999999999999999999999999999998755
Q ss_pred hh
Q 001991 437 AR 438 (985)
Q Consensus 437 ~R 438 (985)
.+
T Consensus 87 ~~ 88 (115)
T 3lqv_A 87 AF 88 (115)
T ss_dssp HT
T ss_pred hh
Confidence 33
No 240
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=2.2e-13 Score=123.97 Aligned_cols=80 Identities=19% Similarity=0.242 Sum_probs=71.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
.....++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3456799999999999999999999999999864432 56789999999999999999999999999999999999
Q ss_pred ccCCC
Q 001991 346 YSIPK 350 (985)
Q Consensus 346 ~a~pk 350 (985)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98643
No 241
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.42 E-value=4.1e-13 Score=124.66 Aligned_cols=79 Identities=16% Similarity=0.216 Sum_probs=71.7
Q ss_pred cccccceeeecCCCCC------CHHHHHHHhhccCCEEEEEEcC---CCCcEEEEEEcCHHHHHHHHHHhCCceeCCc-e
Q 001991 357 DANQGTLVVFNLDSSV------STEELHQIFGIYGEIREIRDTQ---HKHNHKFIEFYDIRAAETALRTLNRSDVAGK-Q 426 (985)
Q Consensus 357 ~~~~~tLfV~NLp~sv------TeedLrelFs~fG~I~~Vri~~---~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr-~ 426 (985)
....++|||+|||..+ ++++|+++|++||.|..|++.. .++|||||+|.+.++|++|++.|||..|.|+ +
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 3446799999999999 7899999999999999999873 3579999999999999999999999999999 9
Q ss_pred EEEEeccCc
Q 001991 427 IKLEASRPG 435 (985)
Q Consensus 427 IkV~~A~~k 435 (985)
|+|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999999754
No 242
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=3.6e-13 Score=124.96 Aligned_cols=80 Identities=21% Similarity=0.254 Sum_probs=72.7
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCC-EEEEEEcC------CCCcEEEEEEcCHHHHHHHHHHhC--CceeCCceEE
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGE-IREIRDTQ------HKHNHKFIEFYDIRAAETALRTLN--RSDVAGKQIK 428 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~-I~~Vri~~------~skGfaFVeF~d~edA~kAI~~LN--G~~I~Gr~Ik 428 (985)
...++|||+|||..+++++|+++|++||. |.+|+++. .++|||||+|.+.++|++|++.|| +..+.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35679999999999999999999999998 99999872 468999999999999999999996 5899999999
Q ss_pred EEeccCcch
Q 001991 429 LEASRPGGA 437 (985)
Q Consensus 429 V~~A~~k~~ 437 (985)
|.|++++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999998664
No 243
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=1.3e-13 Score=131.01 Aligned_cols=79 Identities=18% Similarity=0.163 Sum_probs=71.5
Q ss_pred ccccceeeecCCCC-CCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCC--ceeCCceEEEEeccC
Q 001991 358 ANQGTLVVFNLDSS-VSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNR--SDVAGKQIKLEASRP 434 (985)
Q Consensus 358 ~~~~tLfV~NLp~s-vTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG--~~I~Gr~IkV~~A~~ 434 (985)
.+.++|||+|||.+ +++++|+++|++||+|.+|++.+ .+|||||+|.+.++|++|++.||+ ..|.|++|+|.++++
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 45679999999998 99999999999999999999875 589999999999999999998864 569999999999987
Q ss_pred cch
Q 001991 435 GGA 437 (985)
Q Consensus 435 k~~ 437 (985)
+..
T Consensus 102 ~~~ 104 (112)
T 1x4f_A 102 YKK 104 (112)
T ss_dssp CSS
T ss_pred ccc
Confidence 653
No 244
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=4.2e-13 Score=124.44 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=73.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCc-EEEEEec------cccceEEEEEeCCHHHHHHHHHHcc--Cccccccccc
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGD-IRTIYTA------CKHRGFVMISYYDIRAARNAMKALQ--NKPLRRRKLD 343 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~-I~sVkit------gksrGfAFV~F~d~esA~kAi~~Ln--g~~I~Gr~L~ 343 (985)
.+.++|||+|||.++++++|+++|++||. |..|.+. ++++|||||+|.+.++|++|++.|+ +..+.|++|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 46799999999999999999999999998 9999863 4789999999999999999999996 5899999999
Q ss_pred ccccCCCCCC
Q 001991 344 IHYSIPKDNP 353 (985)
Q Consensus 344 V~~a~pk~~~ 353 (985)
|.++.++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999887654
No 245
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.2e-13 Score=128.13 Aligned_cols=81 Identities=11% Similarity=0.261 Sum_probs=73.6
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
....++|||+|||..+++++|+++|++||.|..|+++.+ .+|||||+|.+.++|++||+. ++..|.|++|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 445679999999999999999999999999999998754 478999999999999999997 99999999999999
Q ss_pred ccCcchh
Q 001991 432 SRPGGAR 438 (985)
Q Consensus 432 A~~k~~R 438 (985)
++++..+
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9987643
No 246
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.41 E-value=5.1e-13 Score=132.12 Aligned_cols=82 Identities=26% Similarity=0.394 Sum_probs=75.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
...+.++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4457899999999999999999999999999999987 56789999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 001991 346 YSIPKDN 352 (985)
Q Consensus 346 ~a~pk~~ 352 (985)
++.+...
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9987654
No 247
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=2.9e-13 Score=123.99 Aligned_cols=82 Identities=29% Similarity=0.450 Sum_probs=70.9
Q ss_pred ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEE-cCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 001991 356 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD-TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 434 (985)
Q Consensus 356 ~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri-~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~ 434 (985)
.....++|||+|||..+++++|+++|++||.|.-++. ....++||||+|.+.++|++|++.|||..|.|++|+|.++++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 3456789999999999999999999999998843322 123689999999999999999999999999999999999988
Q ss_pred cch
Q 001991 435 GGA 437 (985)
Q Consensus 435 k~~ 437 (985)
+..
T Consensus 91 ~~~ 93 (101)
T 2fc9_A 91 RGS 93 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 248
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.41 E-value=1.5e-13 Score=124.29 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=68.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
..+.++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 345699999999999999999999999999875543 567899999999999999999999999999999999998
Q ss_pred cC
Q 001991 347 SI 348 (985)
Q Consensus 347 a~ 348 (985)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 249
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=9.6e-13 Score=121.00 Aligned_cols=82 Identities=17% Similarity=0.318 Sum_probs=73.8
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++ ++..|.|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 34567899999999999999999999999999999976 47789999999999999999997 477899999999
Q ss_pred cccCCCCCC
Q 001991 345 HYSIPKDNP 353 (985)
Q Consensus 345 ~~a~pk~~~ 353 (985)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqg_A 88 KLPNSKQSQ 96 (103)
T ss_dssp ECCCTTCCC
T ss_pred EecCCCCcC
Confidence 999887654
No 250
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=3.7e-13 Score=125.42 Aligned_cols=78 Identities=9% Similarity=0.156 Sum_probs=71.6
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
....++|||+|||.++|+++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|+. +||..|.|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 345689999999999999999999999999999998753 68999999999999999999 9999999999999998
Q ss_pred cCc
Q 001991 433 RPG 435 (985)
Q Consensus 433 ~~k 435 (985)
..-
T Consensus 87 ~~~ 89 (103)
T 1s79_A 87 DDY 89 (103)
T ss_dssp HHH
T ss_pred hHH
Confidence 653
No 251
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.41 E-value=1.6e-13 Score=126.15 Aligned_cols=78 Identities=21% Similarity=0.331 Sum_probs=69.5
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC------CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH------KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 430 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~------skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~ 430 (985)
....++|||+|||.++++++|+++|++|| |.+|++..+ ++|||||+|.+.++|++|+ .|||..|+|++|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34567999999999999999999999999 999998754 3789999999999999999 899999999999999
Q ss_pred eccCcc
Q 001991 431 ASRPGG 436 (985)
Q Consensus 431 ~A~~k~ 436 (985)
+++++.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998754
No 252
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=8.2e-13 Score=119.76 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=71.8
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEE-EcCC-CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCc
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIR-DTQH-KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 435 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vr-i~~~-skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k 435 (985)
...++|||+|||..+++++|+++|++||.|.+|+ ++.+ ..+.|||+|.+.++|++|++.|||..|.|++|+|.++.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 3467999999999999999999999999999995 6654 3456999999999999999999999999999999999987
Q ss_pred c
Q 001991 436 G 436 (985)
Q Consensus 436 ~ 436 (985)
+
T Consensus 93 ~ 93 (96)
T 2e44_A 93 M 93 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 253
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=5.4e-13 Score=119.95 Aligned_cols=79 Identities=11% Similarity=0.240 Sum_probs=72.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
.....++|||+|||.++++++|+++|++| .|..|++ +++++|||||+|.+.++|++|++ |++..|.|+.|.|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 34567999999999999999999999999 8988876 56789999999999999999999 999999999999999
Q ss_pred cCCCC
Q 001991 347 SIPKD 351 (985)
Q Consensus 347 a~pk~ 351 (985)
+.++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98764
No 254
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.41 E-value=2.1e-13 Score=129.16 Aligned_cols=79 Identities=11% Similarity=0.100 Sum_probs=72.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccC-cEEEEEe-ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFG-DIRTIYT-ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 349 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG-~I~sVki-tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~p 349 (985)
....++|||+|||+++++++|+++|++|| +|..+++ ..+++|||||+|.+.++|++|++.|||..|.|++|.|.++..
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 34568999999999999999999999999 9999988 467899999999999999999999999999999999999864
Q ss_pred C
Q 001991 350 K 350 (985)
Q Consensus 350 k 350 (985)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 3
No 255
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=5.6e-13 Score=122.16 Aligned_cols=84 Identities=20% Similarity=0.359 Sum_probs=71.9
Q ss_pred cccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc--CCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 355 EKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT--QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 355 ~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~--~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
......++|||+|||..+++++|+++|+.|+.|.-++.. ...++||||+|.+.++|++|++.|||..|.|++|+|.++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 344567899999999999999999999999765554432 234789999999999999999999999999999999999
Q ss_pred cCcchh
Q 001991 433 RPGGAR 438 (985)
Q Consensus 433 ~~k~~R 438 (985)
+++..+
T Consensus 90 ~~~~~~ 95 (102)
T 2fc8_A 90 KPKGEG 95 (102)
T ss_dssp CCCCSS
T ss_pred cCCCCC
Confidence 987654
No 256
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.40 E-value=1.3e-13 Score=123.63 Aligned_cols=77 Identities=23% Similarity=0.425 Sum_probs=67.9
Q ss_pred cEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001991 276 RTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 350 (985)
Q Consensus 276 rtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk 350 (985)
++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.+ |++|++.|+|..+.|++|.|.++.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999986 3678999999999999 99999999999999999999999876
Q ss_pred CCC
Q 001991 351 DNP 353 (985)
Q Consensus 351 ~~~ 353 (985)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 257
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=9.6e-13 Score=120.00 Aligned_cols=80 Identities=18% Similarity=0.313 Sum_probs=73.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 350 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk 350 (985)
...+.++|||+|| ++++++|+++|++||+|..|++ .+++|||||+|.+.++|++|++.|++..|.|++|.|.++.++
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 4457799999996 8999999999999999999998 688999999999999999999999999999999999999876
Q ss_pred CCC
Q 001991 351 DNP 353 (985)
Q Consensus 351 ~~~ 353 (985)
...
T Consensus 88 ~~~ 90 (97)
T 1x5p_A 88 PML 90 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 258
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=2.4e-13 Score=123.95 Aligned_cols=79 Identities=22% Similarity=0.349 Sum_probs=72.4
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEE-EEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCce----E
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIR-EIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQ----I 427 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~-~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~----I 427 (985)
...++|||+|||..+++++|+++|++||.|. +|+++.+ ++|||||+|.+.++|++|++.|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4567999999999999999999999999999 9988654 4589999999999999999999999999999 9
Q ss_pred EEEeccCcc
Q 001991 428 KLEASRPGG 436 (985)
Q Consensus 428 kV~~A~~k~ 436 (985)
+|.|+++..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999998754
No 259
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.40 E-value=3.4e-13 Score=134.77 Aligned_cols=81 Identities=10% Similarity=0.159 Sum_probs=72.8
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccC--CEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYG--EIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG--~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
..++|||+|||..+++++|+++|++|| .|.+|+++.+ ++|||||+|.+.++|++||+.|||..|.|++|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 356999999999999999999999999 9999998644 578999999999999999999999999999999999
Q ss_pred ccCcchhh
Q 001991 432 SRPGGARR 439 (985)
Q Consensus 432 A~~k~~Rr 439 (985)
+.++..++
T Consensus 134 a~~~~~~~ 141 (156)
T 3n9u_C 134 ATRQNLSQ 141 (156)
T ss_dssp CCHHHHHH
T ss_pred cCCCcchh
Confidence 98766443
No 260
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.40 E-value=7.2e-13 Score=119.87 Aligned_cols=77 Identities=22% Similarity=0.382 Sum_probs=64.8
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCce--eCCceEEEEeccC
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSD--VAGKQIKLEASRP 434 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~--I~Gr~IkV~~A~~ 434 (985)
.....+|||+|||.++|+++|+++|++||.|.+|+++.+++|||||+|.+.++|++ |++.. +.|++|.|.++.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 34567999999999999999999999999999999998899999999999999983 56665 4699999999998
Q ss_pred cch
Q 001991 435 GGA 437 (985)
Q Consensus 435 k~~ 437 (985)
+..
T Consensus 84 k~~ 86 (89)
T 3d2w_A 84 KHN 86 (89)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 261
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.40 E-value=5.5e-13 Score=124.36 Aligned_cols=78 Identities=23% Similarity=0.477 Sum_probs=72.4
Q ss_pred CCCCCcEEEEecCCCC-CCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001991 271 GEHPSRTLFVRNINSN-VEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 349 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~-vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~p 349 (985)
.....++|||+|||.+ +++++|+++|++||+|..|++ .+|||||+|.+.++|++|++.|++..|.|+.|.|.++.+
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 3445689999999999 999999999999999999999 789999999999999999999999999999999999975
Q ss_pred CC
Q 001991 350 KD 351 (985)
Q Consensus 350 k~ 351 (985)
..
T Consensus 100 ~~ 101 (110)
T 1wf1_A 100 PK 101 (110)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 262
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=3.3e-13 Score=125.72 Aligned_cols=77 Identities=13% Similarity=0.319 Sum_probs=70.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
.+...++|||+|||+++|+++|+++|++||+|.+|++ .+.++|||||+|.+.++|++|++ +++..|.|+.|.|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999986 36789999999999999999998 999999999999987
Q ss_pred cC
Q 001991 347 SI 348 (985)
Q Consensus 347 a~ 348 (985)
+.
T Consensus 86 ~~ 87 (103)
T 1s79_A 86 KD 87 (103)
T ss_dssp HH
T ss_pred ch
Confidence 64
No 263
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.40 E-value=6.1e-13 Score=126.65 Aligned_cols=83 Identities=24% Similarity=0.414 Sum_probs=75.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|+.|.|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 4567799999999999999999999999999999976 466899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 001991 347 SIPKDNP 353 (985)
Q Consensus 347 a~pk~~~ 353 (985)
+.+....
T Consensus 111 a~~~~~~ 117 (124)
T 2kt5_A 111 VASQIDL 117 (124)
T ss_dssp ECCTTCC
T ss_pred eCCCCCC
Confidence 9876543
No 264
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.40 E-value=5.8e-13 Score=124.66 Aligned_cols=82 Identities=21% Similarity=0.362 Sum_probs=70.7
Q ss_pred ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 001991 356 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 430 (985)
Q Consensus 356 ~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~ 430 (985)
.....++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++.+ +..|.|++|+|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3446679999999999999999999999999999999754 4789999999999999999976 599999999999
Q ss_pred eccCcchh
Q 001991 431 ASRPGGAR 438 (985)
Q Consensus 431 ~A~~k~~R 438 (985)
++.++..+
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99987643
No 265
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=2.4e-13 Score=123.79 Aligned_cols=78 Identities=19% Similarity=0.203 Sum_probs=69.3
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~-----~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
...++|||+|||..+++++|+++|++||.|..++++. ..+|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 4567899999999999999999999999997654432 25789999999999999999999999999999999998
Q ss_pred cCc
Q 001991 433 RPG 435 (985)
Q Consensus 433 ~~k 435 (985)
..+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 764
No 266
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=3.9e-13 Score=125.87 Aligned_cols=82 Identities=23% Similarity=0.296 Sum_probs=72.8
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCE----EEEEEc-CCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEI----REIRDT-QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I----~~Vri~-~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
....++|||+|||..+++++|+++|++||.| ..+++. ...+|||||+|.+.++|++|++.|||..|.|++|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456799999999999999999999999998 455543 45789999999999999999999999999999999999
Q ss_pred ccCcchh
Q 001991 432 SRPGGAR 438 (985)
Q Consensus 432 A~~k~~R 438 (985)
++++..+
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9987644
No 267
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.40 E-value=7e-13 Score=118.06 Aligned_cols=75 Identities=21% Similarity=0.359 Sum_probs=68.1
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
....++|||+|||..+++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|++ +++..|.|++|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 346779999999999999999999999999999998644 47899999999999999996 688999999999987
Q ss_pred c
Q 001991 432 S 432 (985)
Q Consensus 432 A 432 (985)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 268
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.40 E-value=2.9e-13 Score=135.27 Aligned_cols=78 Identities=14% Similarity=0.267 Sum_probs=71.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccC--cEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFG--DIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG--~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
...++|||+|||.++++++|+++|++|| +|..|++ +++++|||||+|.+.++|++||+.|+|..|.|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 9999876 67899999999999999999999999999999999999
Q ss_pred ccCCC
Q 001991 346 YSIPK 350 (985)
Q Consensus 346 ~a~pk 350 (985)
++.++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 98754
No 269
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=4.8e-13 Score=123.40 Aligned_cols=81 Identities=26% Similarity=0.414 Sum_probs=73.8
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
....++|||+|||..+++++|+++|++||.|..|+++.+ .+|||||+|.+.++|++|++. |+..|.|++|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 456789999999999999999999999999999998754 358999999999999999998 99999999999999
Q ss_pred ccCcchh
Q 001991 432 SRPGGAR 438 (985)
Q Consensus 432 A~~k~~R 438 (985)
++++..+
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9987644
No 270
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.40 E-value=4.3e-13 Score=125.58 Aligned_cols=82 Identities=16% Similarity=0.395 Sum_probs=70.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.+ +..|.|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 4557799999999999999999999999999999986 4778999999999999999999865 599999999999
Q ss_pred ccCCCCCC
Q 001991 346 YSIPKDNP 353 (985)
Q Consensus 346 ~a~pk~~~ 353 (985)
++.++...
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99877543
No 271
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.39 E-value=3.9e-13 Score=120.58 Aligned_cols=75 Identities=15% Similarity=0.319 Sum_probs=70.2
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCc
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 435 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k 435 (985)
..++|||+|||..+++++|+++|++| .|.+|++. .++|||||+|.+.++|++|++.|||..+.|++|+|+++..+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 45789999999999999999999999 99999885 67899999999999999999999999999999999998764
No 272
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.39 E-value=1.1e-12 Score=126.50 Aligned_cols=76 Identities=25% Similarity=0.410 Sum_probs=70.1
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
....++|||+|||..+++++|+++|++||.|..|++..+ .+|||||+|.+.++|++|++.|||..|.|++|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 345679999999999999999999999999999998654 589999999999999999999999999999999998
Q ss_pred c
Q 001991 432 S 432 (985)
Q Consensus 432 A 432 (985)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 273
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.39 E-value=2.9e-13 Score=117.25 Aligned_cols=70 Identities=19% Similarity=0.427 Sum_probs=65.6
Q ss_pred EEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001991 277 TLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 347 (985)
Q Consensus 277 tLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a 347 (985)
+|||+|||+++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++ +++..+.|++|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999976 56789999999999999999997 9999999999999875
No 274
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1e-12 Score=121.78 Aligned_cols=80 Identities=13% Similarity=0.212 Sum_probs=72.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEE-EEe----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT-IYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~s-Vki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
.....++|||+|||+++++++|+++|++||.|.. |.+ +++++|||||+|.+.++|++|++. ++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 3456799999999999999999999999999987 665 678899999999999999999986 9999999999999
Q ss_pred ccCCCC
Q 001991 346 YSIPKD 351 (985)
Q Consensus 346 ~a~pk~ 351 (985)
++.++.
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 887654
No 275
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.5e-13 Score=121.87 Aligned_cols=76 Identities=20% Similarity=0.300 Sum_probs=69.7
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecc
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 433 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~ 433 (985)
..++|||+|||..+++++|+++|++||.|..|++..+ .+|||||+|.+.++|++|++.|||..+.|+.|+|.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 4679999999999999999999999999999998654 47899999999999999999999999999999988765
Q ss_pred C
Q 001991 434 P 434 (985)
Q Consensus 434 ~ 434 (985)
.
T Consensus 84 s 84 (85)
T 1x4e_A 84 S 84 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 276
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.39 E-value=1e-12 Score=126.65 Aligned_cols=78 Identities=28% Similarity=0.471 Sum_probs=71.6
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 270 YGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 270 ~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
....+.++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|++..|.|++|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999999986 4678999999999999999999999999999999999
Q ss_pred ccc
Q 001991 345 HYS 347 (985)
Q Consensus 345 ~~a 347 (985)
.++
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 277
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=9.5e-13 Score=123.22 Aligned_cols=79 Identities=16% Similarity=0.269 Sum_probs=71.7
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCcee--------CC
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDV--------AG 424 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I--------~G 424 (985)
....++|||+|||..+++++|+++|++||.|..|++..+ ++|||||+|.+.++|++|++.|||..| .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 345679999999999999999999999999999998754 468999999999999999999999999 57
Q ss_pred ceEEEEeccCc
Q 001991 425 KQIKLEASRPG 435 (985)
Q Consensus 425 r~IkV~~A~~k 435 (985)
++|.|.|+.++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999875
No 278
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.38 E-value=2.3e-13 Score=123.05 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=67.5
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC-----CCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecc
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 433 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~-----~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~ 433 (985)
..++|||+|||..+++++|+++|++||.|..++++. ..++||||+|.+.++|++|++.|||..|.|++|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 457999999999999999999999999997665543 357899999999999999999999999999999999986
Q ss_pred C
Q 001991 434 P 434 (985)
Q Consensus 434 ~ 434 (985)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 279
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.38 E-value=6.6e-13 Score=133.95 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=70.4
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-CCcEEEEEEcCHHHHHHHHHHhCCceeCC--ceEEEEeccCcc
Q 001991 360 QGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-KHNHKFIEFYDIRAAETALRTLNRSDVAG--KQIKLEASRPGG 436 (985)
Q Consensus 360 ~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-skGfaFVeF~d~edA~kAI~~LNG~~I~G--r~IkV~~A~~k~ 436 (985)
..+|||+||+..+|+++|+++|++||+|++|++..+ +++||||+|.+.++|++|++.|||..|.| ++|+|+|++++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 457999999999999999999999999999998644 57899999999999999999999999955 999999999753
No 280
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.38 E-value=3.4e-13 Score=116.78 Aligned_cols=70 Identities=13% Similarity=0.276 Sum_probs=65.4
Q ss_pred ceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 362 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 362 tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
+|||+|||.++++++|+++|++||.|.+|++..+ ++|||||+|.+.++|++|++ |||..++|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999988654 47899999999999999998 9999999999999875
No 281
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.38 E-value=6.8e-13 Score=125.36 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=67.4
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCce-----EEEEecc
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ-----IKLEASR 433 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~-----IkV~~A~ 433 (985)
...+|||.|||.++++++|+++|++||+|..|.++.+ +||||+|.+.++|++||+.|||..|.|++ |+|..+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 4579999999999999999999999999999999876 99999999999999999999999999998 7777766
Q ss_pred Ccc
Q 001991 434 PGG 436 (985)
Q Consensus 434 ~k~ 436 (985)
++.
T Consensus 93 ~~~ 95 (115)
T 3beg_B 93 PRS 95 (115)
T ss_dssp ---
T ss_pred CCC
Confidence 544
No 282
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.38 E-value=1.1e-12 Score=126.74 Aligned_cols=74 Identities=22% Similarity=0.299 Sum_probs=68.3
Q ss_pred ceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcE-EEEEEcCHHHHHHHHHHhCCceeCC--ceEEEEeccCcc
Q 001991 362 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNH-KFIEFYDIRAAETALRTLNRSDVAG--KQIKLEASRPGG 436 (985)
Q Consensus 362 tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGf-aFVeF~d~edA~kAI~~LNG~~I~G--r~IkV~~A~~k~ 436 (985)
.|||+||+..+++++|+++|++||.|.+|++..+ .|| |||+|.+.++|.+|++.|||..|.| ++|+|.+|+++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 5789999999999999999999999999998764 586 9999999999999999999999987 699999999865
No 283
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=7.2e-13 Score=126.24 Aligned_cols=77 Identities=19% Similarity=0.204 Sum_probs=70.1
Q ss_pred ccccceee--ecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCcee-----CCceEEEE
Q 001991 358 ANQGTLVV--FNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDV-----AGKQIKLE 430 (985)
Q Consensus 358 ~~~~tLfV--~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I-----~Gr~IkV~ 430 (985)
.+..+||| +||+..+++++|+++|++||.|.+|.+.. .+|||||+|.+.++|++|++.|||+++ .|++|+|.
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 101 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence 34678999 66999999999999999999999998875 489999999999999999999999998 79999999
Q ss_pred eccCc
Q 001991 431 ASRPG 435 (985)
Q Consensus 431 ~A~~k 435 (985)
|++..
T Consensus 102 ~a~~~ 106 (114)
T 2cq2_A 102 FVEKV 106 (114)
T ss_dssp EESCC
T ss_pred ecccC
Confidence 98753
No 284
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.37 E-value=1.8e-13 Score=122.60 Aligned_cols=75 Identities=20% Similarity=0.415 Sum_probs=67.4
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCc
Q 001991 361 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPG 435 (985)
Q Consensus 361 ~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k 435 (985)
++|||+|||..+++++|+++|++||.|.+|++..+ ++|||||+|.+.+ |++|++.|||..++|++|+|++|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999998744 5789999999999 99999999999999999999999875
Q ss_pred c
Q 001991 436 G 436 (985)
Q Consensus 436 ~ 436 (985)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 285
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.37 E-value=2.7e-13 Score=124.20 Aligned_cols=82 Identities=16% Similarity=0.238 Sum_probs=72.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEE----eccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY----TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVk----itgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
...+.++|||+|||.++++++|+++|++||.|..+. .+++++|||||+|.+.++|++|++ |++..|.|+.|.|.+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 344679999999999999999999999999876621 257889999999999999999998 999999999999999
Q ss_pred cCCCCCC
Q 001991 347 SIPKDNP 353 (985)
Q Consensus 347 a~pk~~~ 353 (985)
+.++...
T Consensus 92 a~~~~~~ 98 (101)
T 1fj7_A 92 PKGRDGT 98 (101)
T ss_dssp CSCCCCS
T ss_pred cCCCCCC
Confidence 9876543
No 286
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=6.9e-13 Score=124.68 Aligned_cols=81 Identities=17% Similarity=0.431 Sum_probs=73.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
..+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++. ++..|.|+.|.|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 345699999999999999999999999999999876 467899999999999999999986 99999999999999
Q ss_pred cCCCCCC
Q 001991 347 SIPKDNP 353 (985)
Q Consensus 347 a~pk~~~ 353 (985)
+.++...
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9887654
No 287
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.37 E-value=4.7e-13 Score=118.07 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=64.1
Q ss_pred cceeeecCCCCC------CHHHHHHHhhccCCEEEEEEcC---CCCcEEEEEEcCHHHHHHHHHHhCCceeCCc-eEEE
Q 001991 361 GTLVVFNLDSSV------STEELHQIFGIYGEIREIRDTQ---HKHNHKFIEFYDIRAAETALRTLNRSDVAGK-QIKL 429 (985)
Q Consensus 361 ~tLfV~NLp~sv------TeedLrelFs~fG~I~~Vri~~---~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr-~IkV 429 (985)
++|||+|||..+ ++++|+++|++||.|.+|++.+ .++|||||+|.+.++|++|++.|||..+.|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 589999999999 7899999999999999999874 3589999999999999999999999999999 8876
No 288
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.37 E-value=3e-13 Score=130.47 Aligned_cols=80 Identities=19% Similarity=0.358 Sum_probs=72.5
Q ss_pred ccccccceeeecCCCCCCHHHHHHHhhccCCEEE--EEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCc----eeCC
Q 001991 356 KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE--IRDTQH-----KHNHKFIEFYDIRAAETALRTLNRS----DVAG 424 (985)
Q Consensus 356 ~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~--Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~----~I~G 424 (985)
.....++|||+|||..+|+++|+++|++||.|.. |+++.+ ++|||||+|.+. +|.+|++.|||. .|.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3455679999999999999999999999999977 888654 579999999999 999999999999 9999
Q ss_pred ceEEEEeccCcc
Q 001991 425 KQIKLEASRPGG 436 (985)
Q Consensus 425 r~IkV~~A~~k~ 436 (985)
++|+|.+++++.
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999998764
No 289
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=3.2e-13 Score=117.18 Aligned_cols=71 Identities=17% Similarity=0.430 Sum_probs=66.4
Q ss_pred cEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001991 276 RTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 347 (985)
Q Consensus 276 rtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a 347 (985)
++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.++ ..+.|++|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 57999999999999999999999999998876 46789999999999999999999998 9999999999876
No 290
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.8e-13 Score=128.25 Aligned_cols=79 Identities=18% Similarity=0.398 Sum_probs=72.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
.+...++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|+ .|++..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQ 99 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEE
Confidence 3345689999999999999999999999999999987 3778999999999999999999 999999999999999
Q ss_pred ccCCC
Q 001991 346 YSIPK 350 (985)
Q Consensus 346 ~a~pk 350 (985)
++.++
T Consensus 100 ~a~~~ 104 (114)
T 2cq4_A 100 ASQAE 104 (114)
T ss_dssp EHHHH
T ss_pred ecCCC
Confidence 98754
No 291
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.37 E-value=1.1e-12 Score=131.48 Aligned_cols=85 Identities=20% Similarity=0.409 Sum_probs=75.3
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccc
Q 001991 269 PYGEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 343 (985)
Q Consensus 269 ~~~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~ 343 (985)
+....+.++|||+|||..+++++|+++|++||+|..|.+ ++.++|||||+|.+.++|++||+.|+|..|.|+.|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344567789999999999999999999999999999976 566899999999999999999999999999999999
Q ss_pred ccccCCCCCC
Q 001991 344 IHYSIPKDNP 353 (985)
Q Consensus 344 V~~a~pk~~~ 353 (985)
|.|+.++...
T Consensus 146 V~~a~~~~~~ 155 (165)
T 1rk8_A 146 VDWCFVKGPK 155 (165)
T ss_dssp EEESEECC--
T ss_pred EEEecCCCCC
Confidence 9999876544
No 292
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=2.3e-12 Score=118.45 Aligned_cols=79 Identities=14% Similarity=0.322 Sum_probs=71.1
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
....++|||+|||..+++++|+++|++||.|..|+++.+ ++|||||+|.+.++|++|++ ++..|.|++|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 445679999999999999999999999999999998654 36899999999999999999 57899999999999
Q ss_pred ccCcch
Q 001991 432 SRPGGA 437 (985)
Q Consensus 432 A~~k~~ 437 (985)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 988654
No 293
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.37 E-value=5.8e-13 Score=119.47 Aligned_cols=76 Identities=16% Similarity=0.367 Sum_probs=70.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 350 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk 350 (985)
...++|||+|||+++++++|+++|++| +|..+++. +++|||||+|.+.++|++|++.|+|..+.|++|+|.++..+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 356899999999999999999999999 99999884 88999999999999999999999999999999999998543
No 294
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.36 E-value=2.9e-13 Score=124.07 Aligned_cols=79 Identities=22% Similarity=0.251 Sum_probs=70.0
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc-----CCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT-----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~-----~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
...++|||+|||..+++++|+++|++||.|.. .++ ..++|||||+|.+.++|++|++ |||..|.|++|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35679999999999999999999999998766 222 3468999999999999999999 9999999999999999
Q ss_pred cCcchh
Q 001991 433 RPGGAR 438 (985)
Q Consensus 433 ~~k~~R 438 (985)
+++..+
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 987644
No 295
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.9e-12 Score=117.30 Aligned_cols=80 Identities=23% Similarity=0.303 Sum_probs=71.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEE-e-ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY-T-ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 349 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVk-i-tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~p 349 (985)
....++|||+|||+++++++|+++|++||.|..|+ + ..+..+.|||+|.+.++|++|++.|+|..|.|++|.|.++.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 34578999999999999999999999999999994 4 444556699999999999999999999999999999999987
Q ss_pred CC
Q 001991 350 KD 351 (985)
Q Consensus 350 k~ 351 (985)
+.
T Consensus 92 ~~ 93 (96)
T 2e44_A 92 EM 93 (96)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 296
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1e-12 Score=118.10 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=70.4
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecc
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 433 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~ 433 (985)
....+|||+|||.++++++|+++|++| .|..|+++.+ ++|||||+|.+.++|++|++ |||..|+|++|+|.+++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 456799999999999999999999999 9999988654 46799999999999999999 99999999999999998
Q ss_pred Ccc
Q 001991 434 PGG 436 (985)
Q Consensus 434 ~k~ 436 (985)
++.
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 754
No 297
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=9.5e-13 Score=125.42 Aligned_cols=79 Identities=14% Similarity=0.277 Sum_probs=71.3
Q ss_pred CCCCCcEEEE--ecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCccc-----cccccc
Q 001991 271 GEHPSRTLFV--RNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL-----RRRKLD 343 (985)
Q Consensus 271 ~e~~srtLfV--gNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I-----~Gr~L~ 343 (985)
...++++||| +||+.++++++|+++|++||+|..|.+ ...||||||+|.+.++|++|++.|||+.+ .|++|+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i-~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM-PPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEEC-CTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 4457899999 669999999999999999999999988 34689999999999999999999999988 789999
Q ss_pred ccccCCC
Q 001991 344 IHYSIPK 350 (985)
Q Consensus 344 V~~a~pk 350 (985)
|.|+...
T Consensus 100 v~~a~~~ 106 (114)
T 2cq2_A 100 LNFVEKV 106 (114)
T ss_dssp EEEESCC
T ss_pred EEecccC
Confidence 9998644
No 298
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=3e-12 Score=116.01 Aligned_cols=80 Identities=18% Similarity=0.311 Sum_probs=69.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCC
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 352 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~ 352 (985)
...++|||+|||.++++++|+++|++||+|..|........||||+|.+.++|++|++ |++..|.|+.|.|.++.++..
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 4568999999999999999999999999999985432222299999999999999999 999999999999999876654
Q ss_pred C
Q 001991 353 P 353 (985)
Q Consensus 353 ~ 353 (985)
.
T Consensus 85 ~ 85 (94)
T 2e5g_A 85 Q 85 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 299
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=6e-13 Score=125.33 Aligned_cols=82 Identities=11% Similarity=0.128 Sum_probs=73.4
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCE-EEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEI-REIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I-~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
....++|||+|||.++++++|+++|++||.| ..|+++.+ .+|||||+|.+.++|++||+. |+..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 3456799999999999999999999999999 78888643 689999999999999999996 99999999999999
Q ss_pred ccCcchhh
Q 001991 432 SRPGGARR 439 (985)
Q Consensus 432 A~~k~~Rr 439 (985)
+.++..++
T Consensus 91 a~~~~~~~ 98 (114)
T 2cpy_A 91 VTLEDMRE 98 (114)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHH
Confidence 98876554
No 300
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.5e-12 Score=118.04 Aligned_cols=77 Identities=16% Similarity=0.307 Sum_probs=68.1
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcc
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGG 436 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~ 436 (985)
..++|||+|||..+++++|+++|++||.|.+|.+......||||+|.+.++|++|++ |||..|.|++|+|.++.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 456999999999999999999999999999984433322299999999999999999 99999999999999987655
No 301
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.35 E-value=1.3e-12 Score=124.05 Aligned_cols=77 Identities=19% Similarity=0.378 Sum_probs=71.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 348 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~ 348 (985)
+.++|||+|||.++++++|+++|++||+|..|++ ++.++|||||+|.+.++|++|+ .|+|..|.|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999876 5778999999999999999999 799999999999999987
Q ss_pred CCC
Q 001991 349 PKD 351 (985)
Q Consensus 349 pk~ 351 (985)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 302
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=5e-13 Score=127.57 Aligned_cols=79 Identities=11% Similarity=0.228 Sum_probs=70.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEE-E----eccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTI-Y----TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sV-k----itgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
.....++|||+|||+++|+++|+++|++||.|..+ . .+++++|||||+|.+.++|++||+ |++..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34567999999999999999999999999998652 2 267889999999999999999998 99999999999999
Q ss_pred ccCCC
Q 001991 346 YSIPK 350 (985)
Q Consensus 346 ~a~pk 350 (985)
++.++
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88653
No 303
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=4.8e-13 Score=116.06 Aligned_cols=71 Identities=20% Similarity=0.369 Sum_probs=66.3
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 361 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 361 ~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
++|||+|||.++++++|+++|++||.|..|++..+ ++|||||+|.+.++|++|++.++ ..+.|++|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999988654 47899999999999999999999 9999999999987
No 304
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.7e-12 Score=120.28 Aligned_cols=78 Identities=22% Similarity=0.288 Sum_probs=70.5
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEE-EEEcC----CCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE-IRDTQ----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~-Vri~~----~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
....+|||+|||.++++++|+++|++||.|.. |+++. .++|||||+|.+.++|++||+. |+..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 45679999999999999999999999999987 87753 3579999999999999999996 999999999999998
Q ss_pred cCcc
Q 001991 433 RPGG 436 (985)
Q Consensus 433 ~~k~ 436 (985)
.+++
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7655
No 305
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.34 E-value=2.3e-12 Score=125.44 Aligned_cols=80 Identities=25% Similarity=0.359 Sum_probs=72.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceE-EEEEeCCHHHHHHHHHHccCccccc--ccccccccCC
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGF-VMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSIP 349 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGf-AFV~F~d~esA~kAi~~Lng~~I~G--r~L~V~~a~p 349 (985)
..--.|||+||+..+|+++|+++|++||+|..|++..+.+|| |||+|.+.++|++|++.|||..|.| +.|+|+|+++
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 344667799999999999999999999999999886667888 9999999999999999999999988 8999999987
Q ss_pred CCC
Q 001991 350 KDN 352 (985)
Q Consensus 350 k~~ 352 (985)
+..
T Consensus 106 ~~l 108 (130)
T 3zzy_A 106 TSL 108 (130)
T ss_dssp SSC
T ss_pred Cce
Confidence 654
No 306
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.34 E-value=6.1e-13 Score=126.36 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=71.5
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCC---EEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGE---IREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 430 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~---I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~ 430 (985)
...++|||+|||.++|+++|+++|+.||. |..|+++.+ ++|||||+|.+.++|++||+ ||+..|+|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45678999999999999999999999999 888887643 57899999999999999999 99999999999999
Q ss_pred eccCcchh
Q 001991 431 ASRPGGAR 438 (985)
Q Consensus 431 ~A~~k~~R 438 (985)
++.+++..
T Consensus 94 ~a~~~~~~ 101 (118)
T 2db1_A 94 KSHRTEMD 101 (118)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99866533
No 307
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.34 E-value=5.9e-13 Score=130.41 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=71.4
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCC---EEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGE---IREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 430 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~---I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~ 430 (985)
....+|||+|||.++|+++|+++|++||. |.+|+++.+ ++|||||+|.+.++|++||+ ||+..|+|+.|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 34678999999999999999999999999 778887643 57899999999999999999 99999999999999
Q ss_pred eccCcchh
Q 001991 431 ASRPGGAR 438 (985)
Q Consensus 431 ~A~~k~~R 438 (985)
++.+++..
T Consensus 121 ~a~~~e~~ 128 (136)
T 2hgl_A 121 KSHRTEMD 128 (136)
T ss_dssp ECCHHHHH
T ss_pred ECChHHHH
Confidence 99766543
No 308
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.33 E-value=2.1e-12 Score=125.99 Aligned_cols=82 Identities=20% Similarity=0.380 Sum_probs=73.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCcEEE--------EE--eccccceEEEEEeCCHHHHHHHHHHccCccccccc
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRT--------IY--TACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK 341 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~s--------Vk--itgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~ 341 (985)
..++++|||+|||+++|+++|+++|++||.|.. ++ .+++++|||||+|.+.++|.+|++.|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 457799999999999999999999999998865 32 36889999999999999999999999999999999
Q ss_pred ccccccCCCCCC
Q 001991 342 LDIHYSIPKDNP 353 (985)
Q Consensus 342 L~V~~a~pk~~~ 353 (985)
|.|.++.+....
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999775443
No 309
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=2.2e-12 Score=119.68 Aligned_cols=79 Identities=10% Similarity=0.219 Sum_probs=70.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
.....++|||+|||+++|+++|+++|++||.| .|++ +++++|||||+|.+.++|++|| .+++..|.|+.|.|..
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 34567899999999999999999999999955 7765 5788999999999999999999 5899999999999998
Q ss_pred cCCCC
Q 001991 347 SIPKD 351 (985)
Q Consensus 347 a~pk~ 351 (985)
+.+..
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87654
No 310
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=2.2e-12 Score=118.60 Aligned_cols=76 Identities=17% Similarity=0.321 Sum_probs=67.6
Q ss_pred CCCcE-EEEecCCCCCCHHH----HHHhhccc-CcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 273 HPSRT-LFVRNINSNVEDSE----LKALFEQF-GDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 273 ~~srt-LfVgNLP~~vTEed----LrelFs~f-G~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
.|+.+ |||+|||.++++++ |+++|++| |+|.+| ++ |+|||.|.+.++|++|++.|+|..+.||+|+|.|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 35666 99999999999988 55899999 599988 23 9999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 001991 347 SIPKDNP 353 (985)
Q Consensus 347 a~pk~~~ 353 (985)
+..+.+.
T Consensus 81 A~~~sd~ 87 (96)
T 2diu_A 81 TPKNREL 87 (96)
T ss_dssp SCCSCCC
T ss_pred cCCCcce
Confidence 9877654
No 311
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=9.2e-13 Score=124.03 Aligned_cols=80 Identities=14% Similarity=0.173 Sum_probs=71.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcE-EEEEe----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDI-RTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I-~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
...+.++|||+|||.++|+++|+++|++||.| ..|++ +++++|||||+|.+.++|++|++. ++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 34567999999999999999999999999999 66665 577899999999999999999976 9999999999999
Q ss_pred ccCCCC
Q 001991 346 YSIPKD 351 (985)
Q Consensus 346 ~a~pk~ 351 (985)
++.++.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 986543
No 312
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.32 E-value=3.5e-12 Score=113.19 Aligned_cols=72 Identities=19% Similarity=0.367 Sum_probs=67.1
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhcc----C-------CEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCce
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIY----G-------EIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 426 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~f----G-------~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~ 426 (985)
...++|||+|||.++++++|+++|++| | .|.++++..+ +|||||+|.+.++|++|+ .|||..+.|++
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-SSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-CcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 346799999999999999999999999 8 9999998765 899999999999999999 89999999999
Q ss_pred EEEEe
Q 001991 427 IKLEA 431 (985)
Q Consensus 427 IkV~~ 431 (985)
|+|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99974
No 313
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.32 E-value=5.8e-13 Score=122.26 Aligned_cols=81 Identities=20% Similarity=0.483 Sum_probs=72.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
.+.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++ ++..+.|+.|.|.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 4456799999999999999999999999999999976 56789999999999999999997 99999999999999
Q ss_pred cCCCCCC
Q 001991 347 SIPKDNP 353 (985)
Q Consensus 347 a~pk~~~ 353 (985)
+.++...
T Consensus 83 a~~~~~~ 89 (102)
T 2xs2_A 83 AIRKQNL 89 (102)
T ss_dssp EEECC--
T ss_pred CCcCcch
Confidence 8876543
No 314
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.00 E-value=1.3e-13 Score=129.71 Aligned_cols=83 Identities=22% Similarity=0.370 Sum_probs=75.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEE--------EEe-----ccccceEEEEEeCCHHHHHHHHHHccCccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRT--------IYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPL 337 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~s--------Vki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I 337 (985)
...+.++|||+|||.++++++|+++|++||.|.. |++ +++++|||||+|.+.++|++|++.|++..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3457799999999999999999999999999988 654 467899999999999999999999999999
Q ss_pred ccccccccccCCCCCC
Q 001991 338 RRRKLDIHYSIPKDNP 353 (985)
Q Consensus 338 ~Gr~L~V~~a~pk~~~ 353 (985)
.|++|.|.++.++...
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999999887654
No 315
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.32 E-value=3.6e-12 Score=128.64 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=73.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-ccccceEEEEEeCCHHHHHHHHHHccCccccc--ccccccccC
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-ACKHRGFVMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSI 348 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-tgksrGfAFV~F~d~esA~kAi~~Lng~~I~G--r~L~V~~a~ 348 (985)
.....+|||+||++.+|+++|+++|++||+|..|++ .+..+|||||+|.+.++|++|++.|||..|.| ++|+|.|++
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 334567999999999999999999999999999987 34568999999999999999999999999965 999999998
Q ss_pred CCCCC
Q 001991 349 PKDNP 353 (985)
Q Consensus 349 pk~~~ 353 (985)
++...
T Consensus 123 ~~~l~ 127 (164)
T 1sjr_A 123 LTSLN 127 (164)
T ss_dssp SSSCC
T ss_pred CCccc
Confidence 87543
No 316
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.32 E-value=2.4e-12 Score=116.36 Aligned_cols=78 Identities=22% Similarity=0.467 Sum_probs=63.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcc--cccccccccccC
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKP--LRRRKLDIHYSI 348 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~--I~Gr~L~V~~a~ 348 (985)
...+..+|||+|||+++|+++|+++|++||+|.+|++...+||||||+|.+.++|++ +++.. +.|++|.|.++.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 456789999999999999999999999999999999876789999999999999984 45554 458999999998
Q ss_pred CCCC
Q 001991 349 PKDN 352 (985)
Q Consensus 349 pk~~ 352 (985)
++..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 7653
No 317
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=7.9e-13 Score=118.28 Aligned_cols=76 Identities=16% Similarity=0.310 Sum_probs=67.7
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCc--eeCCceEEEEeccCcc
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRS--DVAGKQIKLEASRPGG 436 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~--~I~Gr~IkV~~A~~k~ 436 (985)
..++|||+|||.++++++|+++|++||.|.+|++..+++|||||+|.+.++|++| ++. .+.|++|+|.++.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL----CGEDLIIKGISVHISNAEPKH 79 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEECCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEEecCCCC
Confidence 4579999999999999999999999999999999988999999999999999864 444 4589999999998876
Q ss_pred hh
Q 001991 437 AR 438 (985)
Q Consensus 437 ~R 438 (985)
.+
T Consensus 80 ~~ 81 (88)
T 1wf0_A 80 NS 81 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 318
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.32 E-value=3.2e-12 Score=124.60 Aligned_cols=81 Identities=26% Similarity=0.359 Sum_probs=71.1
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEE--------EEE--cCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceE
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE--------IRD--TQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 427 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~--------Vri--~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~I 427 (985)
...++|||+|||..+|+++|+++|++||.|.. |++ .+..+|||||+|.+.++|.+|++.|||..|.|++|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 45679999999999999999999999998865 332 35678999999999999999999999999999999
Q ss_pred EEEeccCcchh
Q 001991 428 KLEASRPGGAR 438 (985)
Q Consensus 428 kV~~A~~k~~R 438 (985)
+|.++++...+
T Consensus 123 ~V~~a~~~~~~ 133 (143)
T 3egn_A 123 VVQFARSARPK 133 (143)
T ss_dssp EEEECCCSCC-
T ss_pred EEEECCCCCCc
Confidence 99999876544
No 319
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.31 E-value=7e-13 Score=123.49 Aligned_cols=81 Identities=12% Similarity=0.082 Sum_probs=72.7
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCC---EEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGE---IREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 430 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~---I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~ 430 (985)
....+|||+|||.++|+++|+++|+.||. |..|+++.+ ++|||||+|.+.++|++||+ +|+..|+|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 45678999999999999999999999998 888888643 57899999999999999999 99999999999999
Q ss_pred eccCcchhh
Q 001991 431 ASRPGGARR 439 (985)
Q Consensus 431 ~A~~k~~Rr 439 (985)
++.+++..+
T Consensus 88 ~a~~~~~~~ 96 (107)
T 2lmi_A 88 EINNEDVDA 96 (107)
T ss_dssp ECCHHHHHH
T ss_pred ECCHHHHHH
Confidence 998766444
No 320
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.31 E-value=9.3e-13 Score=113.86 Aligned_cols=70 Identities=20% Similarity=0.476 Sum_probs=64.8
Q ss_pred EEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001991 277 TLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 347 (985)
Q Consensus 277 tLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a 347 (985)
+|||+|||.++++++|+++|++||+|..+.+ +++++|||||+|.+.++|++|++ +++..+.|++|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5999999999999999999999999999976 46789999999999999999997 5899999999999864
No 321
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.98 E-value=1.8e-13 Score=128.87 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=73.3
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEE--------EEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCC
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIRE--------IRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAG 424 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~--------Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~G 424 (985)
...++|||+|||..+++++|+++|++||.|.. |+++.+ .+|||||+|.+.++|++|++.|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45679999999999999999999999999998 777643 47899999999999999999999999999
Q ss_pred ceEEEEeccCcchh
Q 001991 425 KQIKLEASRPGGAR 438 (985)
Q Consensus 425 r~IkV~~A~~k~~R 438 (985)
++|+|.+++++..+
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999886543
No 322
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.31 E-value=1.1e-12 Score=124.73 Aligned_cols=77 Identities=8% Similarity=0.114 Sum_probs=69.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCc---EEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGD---IRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~---I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
....++|||+|||.++|+++|+++|+.||. |..|++ .++++|||||+|.+.++|++|++ +++..|.|+.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 346789999999999999999999999998 777765 47789999999999999999998 9999999999999
Q ss_pred cccCC
Q 001991 345 HYSIP 349 (985)
Q Consensus 345 ~~a~p 349 (985)
.++.+
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 323
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=3.4e-12 Score=117.37 Aligned_cols=72 Identities=21% Similarity=0.329 Sum_probs=64.9
Q ss_pred ccceeeecCCCCCCHHH----HHHHhhcc-CCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 001991 360 QGTLVVFNLDSSVSTEE----LHQIFGIY-GEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 434 (985)
Q Consensus 360 ~~tLfV~NLp~svTeed----LrelFs~f-G~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~ 434 (985)
.+.|||.|||..+++++ |+++|++| |+|.+|. .|+|||+|.+.++|++|++.|||..+.||+|+|.+|+.
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 33499999999999888 55899999 5999982 39999999999999999999999999999999999987
Q ss_pred cc
Q 001991 435 GG 436 (985)
Q Consensus 435 k~ 436 (985)
+.
T Consensus 84 ~s 85 (96)
T 2diu_A 84 NR 85 (96)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 324
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.30 E-value=1.6e-12 Score=121.07 Aligned_cols=79 Identities=10% Similarity=0.053 Sum_probs=71.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCc---EEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGD---IRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 343 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~---I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~ 343 (985)
.....++|||+|||+++|+++|+++|+.||. |..|++ .++++|||||+|.+.++|++|++ +++..|.|+.|.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3456799999999999999999999999998 788775 46789999999999999999998 999999999999
Q ss_pred ccccCCC
Q 001991 344 IHYSIPK 350 (985)
Q Consensus 344 V~~a~pk 350 (985)
|.++.++
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9988653
No 325
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.30 E-value=2.5e-12 Score=114.12 Aligned_cols=72 Identities=18% Similarity=0.393 Sum_probs=67.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccc----C-------cEEEEEeccccceEEEEEeCCHHHHHHHHHHccCccccccc
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQF----G-------DIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRK 341 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~f----G-------~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~ 341 (985)
.+.++|||+|||+++++++|+++|++| | +|..+++ .+.+|||||+|.+.++|++|+ .|++..+.|++
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~-~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-CSSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEe-cCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 467999999999999999999999999 8 9999998 456999999999999999999 99999999999
Q ss_pred ccccc
Q 001991 342 LDIHY 346 (985)
Q Consensus 342 L~V~~ 346 (985)
|.|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99864
No 326
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.30 E-value=6.7e-13 Score=130.53 Aligned_cols=120 Identities=10% Similarity=0.047 Sum_probs=69.8
Q ss_pred eEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCCCCcccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEE
Q 001991 313 GFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRD 392 (985)
Q Consensus 313 GfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri 392 (985)
|+|+.+|..++.+..++..+... ..|...--.+... ..........+|||+|||.++|+++|+++|++|| |.+|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~--~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i 77 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDS--EFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHI 77 (139)
T ss_dssp ----------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEEC
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCCCc--ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE
Confidence 67888888888777777654433 2232221111111 1112234567999999999999999999999999 668888
Q ss_pred cCC----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcch
Q 001991 393 TQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 437 (985)
Q Consensus 393 ~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~~ 437 (985)
+.+ ++|||||+|.+.++|++|| .+|+..|+|+.|+|.++.+++.
T Consensus 78 ~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 78 EIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred EECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 754 5789999999999999999 6999999999999999987653
No 327
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.30 E-value=3.3e-12 Score=120.63 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=62.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
...++|||+|||.++++++|+++|++||+|..|++... |||||+|.+.++|++||+.||+..|.|++|.|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 45689999999999999999999999999999998433 999999999999999999999999999994443
No 328
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=5.5e-13 Score=127.26 Aligned_cols=81 Identities=11% Similarity=0.117 Sum_probs=70.2
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEE-EEc----CCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREI-RDT----QHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~V-ri~----~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
....+|||+|||.++|+++|+++|++||.|..+ .+. +..+|||||+|.+.++|++||+ |||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 345799999999999999999999999998763 222 2357899999999999999999 9999999999999999
Q ss_pred cCcchhh
Q 001991 433 RPGGARR 439 (985)
Q Consensus 433 ~~k~~Rr 439 (985)
.+++..+
T Consensus 102 ~~~~~~~ 108 (124)
T 1wel_A 102 TKKGMLE 108 (124)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 8766433
No 329
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=3.7e-12 Score=120.06 Aligned_cols=75 Identities=11% Similarity=0.178 Sum_probs=68.3
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 434 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~ 434 (985)
...+|||+|||.++++++|+++|+.| .|..|+++.+ ++|||||+|.+.++|++|| .||+..|+|+.|.|..+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 45699999999999999999999999 8999998743 5899999999999999999 5999999999999998865
Q ss_pred c
Q 001991 435 G 435 (985)
Q Consensus 435 k 435 (985)
+
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 330
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.30 E-value=3.7e-12 Score=135.98 Aligned_cols=105 Identities=17% Similarity=0.189 Sum_probs=78.9
Q ss_pred cCcccccccccccccCCCCCCCcccccccceeeecCCCCC---------CHHHHHHHhhccCCEEEEEEcCCCCcEEEEE
Q 001991 333 QNKPLRRRKLDIHYSIPKDNPSEKDANQGTLVVFNLDSSV---------STEELHQIFGIYGEIREIRDTQHKHNHKFIE 403 (985)
Q Consensus 333 ng~~I~Gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~sv---------TeedLrelFs~fG~I~~Vri~~~skGfaFVe 403 (985)
+...+.|+.....+..............++|||+||+..+ ++++|+++|++||+|.+|+++. .+|||||+
T Consensus 107 ~~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-~kG~AFV~ 185 (240)
T 3u1l_A 107 EVLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-SKNCGFVK 185 (240)
T ss_dssp SSBCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-GGTEEEEE
T ss_pred cCcccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-CCCEEEEE
Confidence 3344556655554443322222234567899999999998 7999999999999999999886 58999999
Q ss_pred EcCHHHHHHHHHHhCCcee------------CCceEEEEeccCcchh
Q 001991 404 FYDIRAAETALRTLNRSDV------------AGKQIKLEASRPGGAR 438 (985)
Q Consensus 404 F~d~edA~kAI~~LNG~~I------------~Gr~IkV~~A~~k~~R 438 (985)
|.+.++|++|+++|+|..| .|+.|.|.||+.+...
T Consensus 186 F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 186 FKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp ESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred eCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 9999999999999999999 8999999999876543
No 331
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.29 E-value=2e-12 Score=136.90 Aligned_cols=76 Identities=17% Similarity=0.262 Sum_probs=70.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhcccC--cEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQFG--DIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~fG--~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
..++|||+|||.++|+++|+++|++|| +|..|++ ++++||||||+|.+.++|++||+.||++.|.|++|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568999999999999999999999999 9999976 678999999999999999999999999999999999999
Q ss_pred cCC
Q 001991 347 SIP 349 (985)
Q Consensus 347 a~p 349 (985)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 332
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.9e-12 Score=115.82 Aligned_cols=79 Identities=22% Similarity=0.449 Sum_probs=68.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCC
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 352 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~ 352 (985)
.++++|||+|||.++++++|+++|++||+|..|++...++|||||+|.+.++|++|+. ....+.|++|.|.++.++..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCCC
Confidence 3579999999999999999999999999999999866789999999999999986542 13456899999999988765
Q ss_pred C
Q 001991 353 P 353 (985)
Q Consensus 353 ~ 353 (985)
.
T Consensus 81 ~ 81 (88)
T 1wf0_A 81 S 81 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 333
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.29 E-value=3.8e-12 Score=121.82 Aligned_cols=78 Identities=22% Similarity=0.361 Sum_probs=70.9
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcch
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 437 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~~ 437 (985)
...++|||+|| ++++++|+++|++||.|.+|++. .++|||||+|.+.++|++|++.|||..|.|++|+|.+++++..
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 45679999996 69999999999999999999886 5789999999999999999999999999999999999998654
Q ss_pred h
Q 001991 438 R 438 (985)
Q Consensus 438 R 438 (985)
+
T Consensus 114 ~ 114 (121)
T 2bz2_A 114 L 114 (121)
T ss_dssp -
T ss_pred C
Confidence 3
No 334
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.29 E-value=1.8e-12 Score=126.97 Aligned_cols=78 Identities=8% Similarity=0.089 Sum_probs=70.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCc---EEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGD---IRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 343 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~---I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~ 343 (985)
.....++|||+|||+++|+++|+++|++||. |..|++ .++++|||||+|.+.++|++|++ +++..|.|+.|.
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 3456789999999999999999999999999 677654 47789999999999999999998 999999999999
Q ss_pred ccccCC
Q 001991 344 IHYSIP 349 (985)
Q Consensus 344 V~~a~p 349 (985)
|.++.+
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 988753
No 335
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.28 E-value=1.7e-12 Score=137.37 Aligned_cols=80 Identities=14% Similarity=0.152 Sum_probs=72.1
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccC--CEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYG--EIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG--~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
..++|||+||+..+|+++|+++|++|| .|++|+|+.+ ++|||||+|.+.++|++||+.||+..|.|++|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 356899999999999999999999999 9999998654 578999999999999999999999999999999999
Q ss_pred ccCcchh
Q 001991 432 SRPGGAR 438 (985)
Q Consensus 432 A~~k~~R 438 (985)
++++...
T Consensus 147 a~~~~~~ 153 (229)
T 3q2s_C 147 VNKQFLS 153 (229)
T ss_dssp CCHHHHH
T ss_pred CCCCccc
Confidence 9876533
No 336
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.28 E-value=7.9e-12 Score=120.70 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=68.0
Q ss_pred cEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceE-EEEEeCCHHHHHHHHHHccCccccc--ccccccccCCCCC
Q 001991 276 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGF-VMISYYDIRAARNAMKALQNKPLRR--RKLDIHYSIPKDN 352 (985)
Q Consensus 276 rtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGf-AFV~F~d~esA~kAi~~Lng~~I~G--r~L~V~~a~pk~~ 352 (985)
..|||+||+..+++++|+++|++||+|..|++..+ .|| |||+|.+.++|++|++.|||..|.| +.|+|.|+.++..
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 34679999999999999999999999999987433 486 9999999999999999999999987 6899999987754
No 337
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.28 E-value=1.4e-12 Score=112.69 Aligned_cols=70 Identities=17% Similarity=0.339 Sum_probs=64.9
Q ss_pred ceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 362 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 362 tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
+|||+|||.++++++|+++|++||.|..|++..+ ++|||||+|.+.++|++|++ +++..+.|++|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 6899999999999999999999999999988643 57899999999999999999 5999999999999875
No 338
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.28 E-value=2.1e-12 Score=118.53 Aligned_cols=79 Identities=19% Similarity=0.375 Sum_probs=71.3
Q ss_pred cccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEec
Q 001991 357 DANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEAS 432 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A 432 (985)
....++|||+|||..+++++|+++|++||.|..|++..+ .+|||||+|.+.++|++|++ ++..+.|++|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345679999999999999999999999999999998754 56899999999999999999 999999999999999
Q ss_pred cCcch
Q 001991 433 RPGGA 437 (985)
Q Consensus 433 ~~k~~ 437 (985)
.++..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 87653
No 339
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.28 E-value=5.3e-12 Score=120.81 Aligned_cols=79 Identities=18% Similarity=0.326 Sum_probs=72.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCC
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPK 350 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk 350 (985)
...+.++|||+|| ++++++|+++|++||+|..|++ .+++|||||+|.+.++|++|++.|+|..|.|+.|.|.++.++
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i-~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 3457899999996 6999999999999999999998 588999999999999999999999999999999999999876
Q ss_pred CC
Q 001991 351 DN 352 (985)
Q Consensus 351 ~~ 352 (985)
..
T Consensus 112 ~~ 113 (121)
T 2bz2_A 112 PM 113 (121)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 340
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=2.8e-12 Score=118.98 Aligned_cols=77 Identities=10% Similarity=0.161 Sum_probs=68.6
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecc
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 433 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~ 433 (985)
....+|||+|||.++|+++|+++|++||.| +|+++.+ ++|||||+|.+.++|++||+ +|+..|+|+.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 456799999999999999999999999955 8887643 47899999999999999995 89999999999999988
Q ss_pred Ccc
Q 001991 434 PGG 436 (985)
Q Consensus 434 ~k~ 436 (985)
+.+
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 655
No 341
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.28 E-value=9.7e-12 Score=128.25 Aligned_cols=113 Identities=13% Similarity=0.178 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHc--cCcccccccccccccCCCCCCCc-----ccccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEc
Q 001991 321 DIRAARNAMKAL--QNKPLRRRKLDIHYSIPKDNPSE-----KDANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDT 393 (985)
Q Consensus 321 d~esA~kAi~~L--ng~~I~Gr~L~V~~a~pk~~~~~-----~~~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~ 393 (985)
+.+.+..|++.. ....+.+....|.....+..+.. .....++|||+|||.++++++|+++|++||.|..|++.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 567788888776 45556666666655422221111 23356799999999999999999999999999999987
Q ss_pred C----CCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 001991 394 Q----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 434 (985)
Q Consensus 394 ~----~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~ 434 (985)
. ..+|||||+|.+.++|++|++.+ +..+.|++|.|.+++.
T Consensus 143 ~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 143 RTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp ECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4 35789999999999999999855 4599999999999765
No 342
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.28 E-value=5.2e-12 Score=128.65 Aligned_cols=80 Identities=25% Similarity=0.446 Sum_probs=73.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
...+.++|||+|||.++++++|+++|++||+|..|.+ ++.++|||||+|.+.++|++|++.|++..|.|++|.|.+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999987 367899999999999999999999999999999999999
Q ss_pred cCCC
Q 001991 347 SIPK 350 (985)
Q Consensus 347 a~pk 350 (985)
+.+.
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8754
No 343
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.25 E-value=9.7e-12 Score=126.62 Aligned_cols=79 Identities=16% Similarity=0.273 Sum_probs=72.9
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecc
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 433 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~ 433 (985)
...++|||+|||..+++++|+++|++||.|..|++..+ ++|||||+|.+.++|++|++.|||..|.|++|+|+++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 34679999999999999999999999999999998754 57899999999999999999999999999999999998
Q ss_pred Ccc
Q 001991 434 PGG 436 (985)
Q Consensus 434 ~k~ 436 (985)
...
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 644
No 344
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=5.3e-12 Score=119.02 Aligned_cols=75 Identities=7% Similarity=0.176 Sum_probs=67.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 348 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~ 348 (985)
...++|||+|||.++|+++|+++|++| .|..|++ .++++|||||+|.+.++|++|+ .+++..|.|+.|.|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 345899999999999999999999999 8888876 4678999999999999999999 699999999999997764
Q ss_pred C
Q 001991 349 P 349 (985)
Q Consensus 349 p 349 (985)
+
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 345
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.24 E-value=3.8e-12 Score=125.18 Aligned_cols=80 Identities=9% Similarity=0.190 Sum_probs=69.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
.....++|||+|||.++|+++|+++|++|| |..|++ .++++|||||+|.+.++|++|| .+++..|.|+.|.|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 445678999999999999999999999999 668875 4678999999999999999999 7999999999999998
Q ss_pred cCCCCC
Q 001991 347 SIPKDN 352 (985)
Q Consensus 347 a~pk~~ 352 (985)
+.++..
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 876543
No 346
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.23 E-value=3.2e-11 Score=112.88 Aligned_cols=77 Identities=17% Similarity=0.162 Sum_probs=67.7
Q ss_pred ccccceeeecCCC-----CCCHHHHHHHhhccCCEEEEEEcC------CCCcEEEEEEcCHHHHHHHHHHhCCceeCCce
Q 001991 358 ANQGTLVVFNLDS-----SVSTEELHQIFGIYGEIREIRDTQ------HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 426 (985)
Q Consensus 358 ~~~~tLfV~NLp~-----svTeedLrelFs~fG~I~~Vri~~------~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~ 426 (985)
.+.++|+|.||.. +-++++|+++|++||.|.+|+++. .++|||||+|.+.++|.+|++.|||+.+.||+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3567999999953 236899999999999999998864 35899999999999999999999999999999
Q ss_pred EEEEeccC
Q 001991 427 IKLEASRP 434 (985)
Q Consensus 427 IkV~~A~~ 434 (985)
|+|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999975
No 347
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.22 E-value=1.1e-11 Score=119.90 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=67.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHhhcccCcEE--EEEe----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 271 GEHPSRTLFVRNINSNVEDSELKALFEQFGDIR--TIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vTEedLrelFs~fG~I~--sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
.....++|||+|||+++|+++|+++|++| .|. .|++ .++++|||||+|.+.++|++|++ +++..|.|+.|.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 34567899999999999999999999999 566 7765 47789999999999999999997 5789999999999
Q ss_pred cccCC
Q 001991 345 HYSIP 349 (985)
Q Consensus 345 ~~a~p 349 (985)
.++.+
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 348
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=3.4e-12 Score=122.94 Aligned_cols=82 Identities=22% Similarity=0.232 Sum_probs=70.6
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCE----EEEEEcC----CCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEI----REIRDTQ----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 430 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I----~~Vri~~----~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~ 430 (985)
...+|||+|||.++|+++|+++|++||.| ..|+++. .++|||||+|.+.++|++||+. |+..|+|+.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 45689999999999999999999999975 4676653 3578999999999999999995 9999999999999
Q ss_pred eccCcchhhhh
Q 001991 431 ASRPGGARRFM 441 (985)
Q Consensus 431 ~A~~k~~Rrl~ 441 (985)
.+.+++.++.+
T Consensus 101 ~a~~~e~~~~~ 111 (123)
T 2dha_A 101 RSTAAEVQQVL 111 (123)
T ss_dssp EECHHHHHHHH
T ss_pred ECCHHHHHHHH
Confidence 99876655433
No 349
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.22 E-value=8.9e-12 Score=120.64 Aligned_cols=77 Identities=25% Similarity=0.273 Sum_probs=68.2
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEE--EEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIR--EIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~--~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
...++|||+|||.++|+++|+++|++| .|. .|+++.+ ++|||||+|.+.++|++||+ +++..|+|+.|+|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 346789999999999999999999999 676 8888743 58999999999999999999 588999999999999
Q ss_pred ccCcc
Q 001991 432 SRPGG 436 (985)
Q Consensus 432 A~~k~ 436 (985)
+.+++
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87544
No 350
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=5.3e-12 Score=121.62 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=66.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcE----EEEEe----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDI----RTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I----~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
...++|||+|||+++|+++|+++|++||.| ..|++ +++++|||||+|.+.++|++|++. +++.|.|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 457899999999999999999999999975 35543 678899999999999999999975 999999999999
Q ss_pred cccCC
Q 001991 345 HYSIP 349 (985)
Q Consensus 345 ~~a~p 349 (985)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87643
No 351
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.20 E-value=1.7e-11 Score=130.93 Aligned_cols=81 Identities=21% Similarity=0.380 Sum_probs=71.6
Q ss_pred CCCCcEEEEecCCCCC---------CHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCccc-----
Q 001991 272 EHPSRTLFVRNINSNV---------EDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPL----- 337 (985)
Q Consensus 272 e~~srtLfVgNLP~~v---------TEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I----- 337 (985)
....++|||+||+..+ ++++|+++|++||+|.+|++ ..++|||||+|.+.++|+.|+++|+|+.|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v-~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRY-VESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEE-EGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEE-ECCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 4578999999999998 79999999999999999998 46799999999999999999999999999
Q ss_pred -------ccccccccccCCCCCC
Q 001991 338 -------RRRKLDIHYSIPKDNP 353 (985)
Q Consensus 338 -------~Gr~L~V~~a~pk~~~ 353 (985)
.|+.|.|.|+..+.++
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TTGGGGGGSCCCEEEECC-----
T ss_pred ccccccCCCCEEEEEEccCCCCH
Confidence 8999999999876544
No 352
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=5.7e-11 Score=111.52 Aligned_cols=83 Identities=16% Similarity=0.276 Sum_probs=72.3
Q ss_pred CCCCCcEEEEecCCCCCC-----------HHHHHHhhcccCcEEEEEe-ccccceEEEEEeCCHHHHHHHHHHccCcccc
Q 001991 271 GEHPSRTLFVRNINSNVE-----------DSELKALFEQFGDIRTIYT-ACKHRGFVMISYYDIRAARNAMKALQNKPLR 338 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~vT-----------EedLrelFs~fG~I~sVki-tgksrGfAFV~F~d~esA~kAi~~Lng~~I~ 338 (985)
...++++|+|+||....+ +++|+++|++||+|..|.+ ...++|||||+|.+.++|++|++.|||..|.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 556889999999954332 6899999999999999976 4557999999999999999999999999999
Q ss_pred cccccccccCCCCCC
Q 001991 339 RRKLDIHYSIPKDNP 353 (985)
Q Consensus 339 Gr~L~V~~a~pk~~~ 353 (985)
|++|.|.++.++...
T Consensus 91 gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 91 GRQITAQAWDGTTDY 105 (112)
T ss_dssp TEECEEEECCSCCCS
T ss_pred CcEEEEEEeCCCCCc
Confidence 999999999876543
No 353
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.9e-11 Score=113.76 Aligned_cols=72 Identities=17% Similarity=0.322 Sum_probs=61.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----c---cccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----A---CKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----t---gksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
...++|||+|||+++++++|+++|++||+|. +.+ + ++++|||||+|.+.++|++|++.|++ +.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 4679999999999999999999999999999 554 2 57899999999999999999998843 66666666
Q ss_pred ccc
Q 001991 345 HYS 347 (985)
Q Consensus 345 ~~a 347 (985)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 544
No 354
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=6.1e-11 Score=111.30 Aligned_cols=80 Identities=20% Similarity=0.273 Sum_probs=69.5
Q ss_pred cccccceeeecCCCCCC-----------HHHHHHHhhccCCEEEEEEc-CCCCcEEEEEEcCHHHHHHHHHHhCCceeCC
Q 001991 357 DANQGTLVVFNLDSSVS-----------TEELHQIFGIYGEIREIRDT-QHKHNHKFIEFYDIRAAETALRTLNRSDVAG 424 (985)
Q Consensus 357 ~~~~~tLfV~NLp~svT-----------eedLrelFs~fG~I~~Vri~-~~skGfaFVeF~d~edA~kAI~~LNG~~I~G 424 (985)
....++|+|.||....+ +++|+++|++||.|.+|.+. +.++|||||+|.+.++|++|++.|||..|.|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34678999999954432 58999999999999999764 3468999999999999999999999999999
Q ss_pred ceEEEEeccCcc
Q 001991 425 KQIKLEASRPGG 436 (985)
Q Consensus 425 r~IkV~~A~~k~ 436 (985)
++|+|.++.++.
T Consensus 92 r~l~v~~a~~~~ 103 (112)
T 2dit_A 92 RQITAQAWDGTT 103 (112)
T ss_dssp EECEEEECCSCC
T ss_pred cEEEEEEeCCCC
Confidence 999999998765
No 355
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.17 E-value=2.9e-11 Score=139.53 Aligned_cols=80 Identities=28% Similarity=0.449 Sum_probs=74.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccc
Q 001991 272 EHPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHY 346 (985)
Q Consensus 272 e~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~ 346 (985)
..+.++|||+|||..+|+++|+++|++||.|..|.+ +++++|||||+|.+.++|.+||+.|||..|.|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456789999999999999999999999999999976 577899999999999999999999999999999999999
Q ss_pred cCCCC
Q 001991 347 SIPKD 351 (985)
Q Consensus 347 a~pk~ 351 (985)
+.++.
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 98654
No 356
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=4.6e-11 Score=112.41 Aligned_cols=77 Identities=13% Similarity=0.178 Sum_probs=65.9
Q ss_pred cccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcC--------CCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEE
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQ--------HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLE 430 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~--------~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~ 430 (985)
..++|||+|||.++++++|+++|++||.|. +.++. .++|||||+|.+.++|++|++.|+ .+.|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 467999999999999999999999999999 76653 458999999999999999999994 4788888888
Q ss_pred eccCcchh
Q 001991 431 ASRPGGAR 438 (985)
Q Consensus 431 ~A~~k~~R 438 (985)
.+.+...+
T Consensus 84 ~~~~~~~~ 91 (114)
T 2dnl_A 84 SSPTIKDK 91 (114)
T ss_dssp CCSSSCSE
T ss_pred cCCCcCCC
Confidence 76654433
No 357
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.14 E-value=8.1e-11 Score=110.14 Aligned_cols=77 Identities=14% Similarity=0.228 Sum_probs=68.0
Q ss_pred CCCcEEEEecCCC-----CCCHHHHHHhhcccCcEEEEEec------cccceEEEEEeCCHHHHHHHHHHccCccccccc
Q 001991 273 HPSRTLFVRNINS-----NVEDSELKALFEQFGDIRTIYTA------CKHRGFVMISYYDIRAARNAMKALQNKPLRRRK 341 (985)
Q Consensus 273 ~~srtLfVgNLP~-----~vTEedLrelFs~fG~I~sVkit------gksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~ 341 (985)
.++++|+|+||.. +-++++|++.|++||+|.+|++. ++++|||||+|.+.++|.+|++.|||+.+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 5789999999963 23789999999999999999761 467999999999999999999999999999999
Q ss_pred ccccccCC
Q 001991 342 LDIHYSIP 349 (985)
Q Consensus 342 L~V~~a~p 349 (985)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999853
No 358
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.13 E-value=9.8e-11 Score=109.51 Aligned_cols=78 Identities=17% Similarity=0.308 Sum_probs=67.4
Q ss_pred ccccceeeecC--CCCCC--------HHHHHHHhhccCCEEEEEEcCC-------CCcEEEEEEcCHHHHHHHHHHhCCc
Q 001991 358 ANQGTLVVFNL--DSSVS--------TEELHQIFGIYGEIREIRDTQH-------KHNHKFIEFYDIRAAETALRTLNRS 420 (985)
Q Consensus 358 ~~~~tLfV~NL--p~svT--------eedLrelFs~fG~I~~Vri~~~-------skGfaFVeF~d~edA~kAI~~LNG~ 420 (985)
.+.+.|.|.|+ +..+. +++|+++|++||.|.+|+++.+ ++|+|||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678999998 33443 3799999999999999998753 4799999999999999999999999
Q ss_pred eeCCceEEEEeccCc
Q 001991 421 DVAGKQIKLEASRPG 435 (985)
Q Consensus 421 ~I~Gr~IkV~~A~~k 435 (985)
.++||+|+|.++...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998653
No 359
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.08 E-value=1.6e-10 Score=119.10 Aligned_cols=75 Identities=13% Similarity=0.319 Sum_probs=67.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 349 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~p 349 (985)
..++|||+|||.++++++|+++|++||+|..|++ ++.++|||||+|.+.++|++|++.+ +..+.|++|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4589999999999999999999999999999976 4678999999999999999999754 5689999999987653
No 360
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.05 E-value=9.4e-11 Score=113.69 Aligned_cols=72 Identities=18% Similarity=0.291 Sum_probs=64.4
Q ss_pred cEEEEecC----CCCCCHHHHHHhhcccCcEEEEEe-----ccccceEEEEEeCC----HHH----HHHHHH--HccCcc
Q 001991 276 RTLFVRNI----NSNVEDSELKALFEQFGDIRTIYT-----ACKHRGFVMISYYD----IRA----ARNAMK--ALQNKP 336 (985)
Q Consensus 276 rtLfVgNL----P~~vTEedLrelFs~fG~I~sVki-----tgksrGfAFV~F~d----~es----A~kAi~--~Lng~~ 336 (985)
++|||+|| |+.+++++|+++|+.||+|.+|.+ ++.++|||||+|.+ +++ |.+|++ .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999975 78999999999996 333 889988 789999
Q ss_pred ccccccccccc
Q 001991 337 LRRRKLDIHYS 347 (985)
Q Consensus 337 I~Gr~L~V~~a 347 (985)
|.|++|+|.+.
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999999865
No 361
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=2.8e-10 Score=105.87 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=60.0
Q ss_pred CCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccCcch
Q 001991 370 SSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRPGGA 437 (985)
Q Consensus 370 ~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~k~~ 437 (985)
..+++++|+++|++||+|.+|++++.++|||||+|.+.++|++|++.+++ +.|++|+|.|++++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 57899999999999999999999988899999999999999999997544 6899999999987653
No 362
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.03 E-value=1.6e-10 Score=112.14 Aligned_cols=80 Identities=16% Similarity=0.254 Sum_probs=68.2
Q ss_pred cceeeecC----CCCCCHHHHHHHhhccCCEEEEEEcCC-----CCcEEEEEEcC----HHH----HHHHHH--HhCCce
Q 001991 361 GTLVVFNL----DSSVSTEELHQIFGIYGEIREIRDTQH-----KHNHKFIEFYD----IRA----AETALR--TLNRSD 421 (985)
Q Consensus 361 ~tLfV~NL----p~svTeedLrelFs~fG~I~~Vri~~~-----skGfaFVeF~d----~ed----A~kAI~--~LNG~~ 421 (985)
..|||+|| |+.+++++|+++|+.||+|.+|+++.+ ++|||||+|.| +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 999999999999999999999988644 58999999996 433 889988 789999
Q ss_pred eCCceEEEEeccCcchhhh
Q 001991 422 VAGKQIKLEASRPGGARRF 440 (985)
Q Consensus 422 I~Gr~IkV~~A~~k~~Rrl 440 (985)
|+|++|+|.+-+.....++
T Consensus 83 I~Gr~irV~ln~~g~~~~~ 101 (136)
T 2j8a_A 83 IMGFKFEVILNKHSILNNI 101 (136)
T ss_dssp ETTEEEEEEECCTTHHHHH
T ss_pred ecCcEEEEEECcccHHHHH
Confidence 9999999999876654443
No 363
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.03 E-value=1.2e-10 Score=108.73 Aligned_cols=68 Identities=28% Similarity=0.376 Sum_probs=58.7
Q ss_pred eecCCCCCCHHHHHHHh------------hccCCEEEEEEcCC----CCcEEEEEEcCHHHHHHHHHHhCCceeCCceEE
Q 001991 365 VFNLDSSVSTEELHQIF------------GIYGEIREIRDTQH----KHNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 428 (985)
Q Consensus 365 V~NLp~svTeedLrelF------------s~fG~I~~Vri~~~----skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~Ik 428 (985)
+.+|+..+++++|++.| ++||.|.+|++..+ ++|||||+|.+.++|++|++.|||+.+.||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45666667777666555 99999999999865 489999999999999999999999999999999
Q ss_pred EEec
Q 001991 429 LEAS 432 (985)
Q Consensus 429 V~~A 432 (985)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 364
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.01 E-value=5.4e-10 Score=106.85 Aligned_cols=76 Identities=20% Similarity=0.270 Sum_probs=65.8
Q ss_pred cccceeeecCC--CCC---CHHHHHHHhhccCCEEEEEEcCC---------CCcEEEEEEcCHHHHHHHHHHhCCceeCC
Q 001991 359 NQGTLVVFNLD--SSV---STEELHQIFGIYGEIREIRDTQH---------KHNHKFIEFYDIRAAETALRTLNRSDVAG 424 (985)
Q Consensus 359 ~~~tLfV~NLp--~sv---TeedLrelFs~fG~I~~Vri~~~---------skGfaFVeF~d~edA~kAI~~LNG~~I~G 424 (985)
+.++|+|.|+- .++ -+++|++.|++||+|.+|+|+.+ .+|++||+|.+.++|.+|++.|||+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 56789999983 222 36899999999999999988643 24899999999999999999999999999
Q ss_pred ceEEEEeccC
Q 001991 425 KQIKLEASRP 434 (985)
Q Consensus 425 r~IkV~~A~~ 434 (985)
|+|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 365
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.99 E-value=6.2e-10 Score=104.04 Aligned_cols=76 Identities=16% Similarity=0.347 Sum_probs=66.6
Q ss_pred CCCcEEEEecC--CCCCC--------HHHHHHhhcccCcEEEEEec-------cccceEEEEEeCCHHHHHHHHHHccCc
Q 001991 273 HPSRTLFVRNI--NSNVE--------DSELKALFEQFGDIRTIYTA-------CKHRGFVMISYYDIRAARNAMKALQNK 335 (985)
Q Consensus 273 ~~srtLfVgNL--P~~vT--------EedLrelFs~fG~I~sVkit-------gksrGfAFV~F~d~esA~kAi~~Lng~ 335 (985)
.|++.|.|.|+ |.++. +++|++.|++||+|.+|++. ++++|+|||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 57899999998 44443 36899999999999999872 246899999999999999999999999
Q ss_pred ccccccccccccC
Q 001991 336 PLRRRKLDIHYSI 348 (985)
Q Consensus 336 ~I~Gr~L~V~~a~ 348 (985)
.+.||+|.|.|+.
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999875
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.98 E-value=7.1e-10 Score=124.14 Aligned_cols=76 Identities=22% Similarity=0.304 Sum_probs=67.0
Q ss_pred cccccceeeec--CCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeC---Cc--eEEE
Q 001991 357 DANQGTLVVFN--LDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVA---GK--QIKL 429 (985)
Q Consensus 357 ~~~~~tLfV~N--Lp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~---Gr--~IkV 429 (985)
..+..+|||+| |+..+|+++|+++|++||+|.+|.+.+ .||||||+|.+.++|++|++.|||+++- |+ .|+|
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~ 93 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 93 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEE
Confidence 34567999999 578999999999999999999998765 6899999999999999999999999882 44 6888
Q ss_pred Eecc
Q 001991 430 EASR 433 (985)
Q Consensus 430 ~~A~ 433 (985)
.|+.
T Consensus 94 ~~~~ 97 (345)
T 3tht_A 94 NFVE 97 (345)
T ss_dssp EECS
T ss_pred EEee
Confidence 8874
No 367
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.98 E-value=9.8e-10 Score=104.49 Aligned_cols=79 Identities=15% Similarity=0.118 Sum_probs=67.1
Q ss_pred ccccceeeecCCC--CC--------CHHHHHHHhhccCCEEEEEEcCC-CCcEEEEEEcCHHHHHHHHHHhCCceeCCce
Q 001991 358 ANQGTLVVFNLDS--SV--------STEELHQIFGIYGEIREIRDTQH-KHNHKFIEFYDIRAAETALRTLNRSDVAGKQ 426 (985)
Q Consensus 358 ~~~~tLfV~NLp~--sv--------TeedLrelFs~fG~I~~Vri~~~-skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~ 426 (985)
.+.++|.|.|+=. +. -+++|+++|++||.|.+|.+..+ .+|++||+|.+.++|.+|++.|||+.++||+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3466888998832 21 24689999999999999999766 4899999999999999999999999999999
Q ss_pred EEEEeccCcc
Q 001991 427 IKLEASRPGG 436 (985)
Q Consensus 427 IkV~~A~~k~ 436 (985)
|+|.++....
T Consensus 85 i~v~~~~~~~ 94 (114)
T 3s6e_A 85 ITAAYVPLPT 94 (114)
T ss_dssp CEEEEECHHH
T ss_pred EEEEEEcHHH
Confidence 9999997543
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=3.1e-09 Score=98.73 Aligned_cols=66 Identities=17% Similarity=0.306 Sum_probs=59.5
Q ss_pred CCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCCCCC
Q 001991 285 SNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIPKDN 352 (985)
Q Consensus 285 ~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~pk~~ 352 (985)
.++++++|+++|++||+|..|++.++++|||||+|.+.++|++|++.+++ +.+++|.|.|+.++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 56999999999999999999998788999999999999999999987554 6799999999977653
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.95 E-value=8e-10 Score=123.72 Aligned_cols=76 Identities=16% Similarity=0.312 Sum_probs=66.6
Q ss_pred CCCCCcEEEEec--CCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccc---cc--ccc
Q 001991 271 GEHPSRTLFVRN--INSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLR---RR--KLD 343 (985)
Q Consensus 271 ~e~~srtLfVgN--LP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~---Gr--~L~ 343 (985)
...++++|||+| |+..+||++|+++|++||+|.+|.+ ...||||||+|.+.++|++|++.|||+.+. |+ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~-~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM-PPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEEC-CTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 456899999999 5789999999999999999999988 347899999999999999999999999873 34 577
Q ss_pred cccc
Q 001991 344 IHYS 347 (985)
Q Consensus 344 V~~a 347 (985)
|.|.
T Consensus 93 ~~~~ 96 (345)
T 3tht_A 93 LNFV 96 (345)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7765
No 370
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.91 E-value=4.3e-10 Score=104.92 Aligned_cols=68 Identities=19% Similarity=0.347 Sum_probs=59.8
Q ss_pred EecCCCCCCHHHHHHhh------------cccCcEEEEEe----ccccceEEEEEeCCHHHHHHHHHHccCccccccccc
Q 001991 280 VRNINSNVEDSELKALF------------EQFGDIRTIYT----ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 343 (985)
Q Consensus 280 VgNLP~~vTEedLrelF------------s~fG~I~sVki----tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~ 343 (985)
+.+|+..+++++|++.| ++||+|.+|++ .++++|||||+|.+.++|++|++.|||+.+.|++|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777778888877766 99999999987 345799999999999999999999999999999999
Q ss_pred cccc
Q 001991 344 IHYS 347 (985)
Q Consensus 344 V~~a 347 (985)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9886
No 371
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.83 E-value=7.8e-09 Score=94.60 Aligned_cols=85 Identities=20% Similarity=0.335 Sum_probs=73.8
Q ss_pred eeEEeecCCCCCCHHHHHHHHHhhCCCcceEE-Eecccccccc-eeEEEEEecCCchhhHHHHHHhcCCcccCCCCcc-E
Q 001991 811 TTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFI-YLPIDFKNKC-NVGYAFINMIDPRQIIPFHQAFNGKKWEKFNSEK-V 887 (985)
Q Consensus 811 TTvMirNIPnk~t~~~L~~~id~~~~g~yDF~-YlpiDf~~~~-N~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~K-~ 887 (985)
|.|+||++|..+|++.++++|... .++||+ |.|-+...+- -.+.|||||++++++..|.+.|+|+.|..-+... .
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~--~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~ 79 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM--PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYP 79 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC--CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc--ccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEee
Confidence 789999999999999999999875 478988 5788877664 4689999999999999999999999999765444 8
Q ss_pred EEEEeecccC
Q 001991 888 ASLAYARIQG 897 (985)
Q Consensus 888 ~~v~yA~iQG 897 (985)
+.|.||-.|-
T Consensus 80 a~VE~AP~qk 89 (91)
T 1uw4_A 80 AIVEFAPFQK 89 (91)
T ss_dssp CEEEECSSCC
T ss_pred eEEEEcCCCc
Confidence 8999998873
No 372
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.82 E-value=6.4e-09 Score=99.44 Aligned_cols=76 Identities=14% Similarity=0.228 Sum_probs=65.7
Q ss_pred CCCcEEEEecCCC--CC---CHHHHHHhhcccCcEEEEEec---------cccceEEEEEeCCHHHHHHHHHHccCcccc
Q 001991 273 HPSRTLFVRNINS--NV---EDSELKALFEQFGDIRTIYTA---------CKHRGFVMISYYDIRAARNAMKALQNKPLR 338 (985)
Q Consensus 273 ~~srtLfVgNLP~--~v---TEedLrelFs~fG~I~sVkit---------gksrGfAFV~F~d~esA~kAi~~Lng~~I~ 338 (985)
.++++|+|+|+-. ++ -+++|++.|++||+|.+|++. ++.+|+|||+|.+.++|.+|++.|||+.+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3789999999942 22 368999999999999999761 245799999999999999999999999999
Q ss_pred cccccccccC
Q 001991 339 RRKLDIHYSI 348 (985)
Q Consensus 339 Gr~L~V~~a~ 348 (985)
||.|.|.|+.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999874
No 373
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.78 E-value=1e-08 Score=97.54 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=65.5
Q ss_pred CCCCcEEEEecCCCCC----------CHHHHHHhhcccCcEEEEEec-cccceEEEEEeCCHHHHHHHHHHccCcccccc
Q 001991 272 EHPSRTLFVRNINSNV----------EDSELKALFEQFGDIRTIYTA-CKHRGFVMISYYDIRAARNAMKALQNKPLRRR 340 (985)
Q Consensus 272 e~~srtLfVgNLP~~v----------TEedLrelFs~fG~I~sVkit-gksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr 340 (985)
..+++.|.++|+=..- -+++|++.|++||.|.+|.+. ...+|+|||+|.+.++|++|++.|||+.+.||
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3578899999984322 135789999999999999883 33589999999999999999999999999999
Q ss_pred cccccccC
Q 001991 341 KLDIHYSI 348 (985)
Q Consensus 341 ~L~V~~a~ 348 (985)
.|.|.|+.
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999874
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=2e-08 Score=91.70 Aligned_cols=75 Identities=27% Similarity=0.402 Sum_probs=64.4
Q ss_pred cccccceeeecCCC----CCCH----HHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEE
Q 001991 357 DANQGTLVVFNLDS----SVST----EELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIK 428 (985)
Q Consensus 357 ~~~~~tLfV~NLp~----svTe----edLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~Ik 428 (985)
.++..||+|.-.+. .+-+ .+|.+.|.+||+|..+++..+. +||+|.+.++|.+|++ |||..++||.|+
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~---~fVtF~d~~sAlaAi~-mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK---MWVTFLEGSSALNVLS-LNGKELLNRTIT 79 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS---EEEEESSHHHHHHGGG-GTTCEETTEEEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC---EEEEECChHHHHHHHh-cCCeEeCCeEEE
Confidence 34567898888762 3333 6799999999999999998754 9999999999999999 999999999999
Q ss_pred EEeccCc
Q 001991 429 LEASRPG 435 (985)
Q Consensus 429 V~~A~~k 435 (985)
|.++++.
T Consensus 80 V~lkt~d 86 (91)
T 2dnr_A 80 IALKSPS 86 (91)
T ss_dssp EEECCCS
T ss_pred EEeCCCC
Confidence 9998864
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=4.9e-08 Score=93.87 Aligned_cols=81 Identities=19% Similarity=0.158 Sum_probs=71.8
Q ss_pred ccccceeeecCCCC-CCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcC-HHHHHHHHHHhC--CceeCCceEEEEecc
Q 001991 358 ANQGTLVVFNLDSS-VSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYD-IRAAETALRTLN--RSDVAGKQIKLEASR 433 (985)
Q Consensus 358 ~~~~tLfV~NLp~s-vTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d-~edA~kAI~~LN--G~~I~Gr~IkV~~A~ 433 (985)
.....|+|.||+.. ++.++|+++|++||+|..|.+..+. ..|||+|.+ .++|.+|++.|| +..|.|..++++...
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 45678999999999 9999999999999999999998764 479999999 899999999995 678999999999887
Q ss_pred Ccchhh
Q 001991 434 PGGARR 439 (985)
Q Consensus 434 ~k~~Rr 439 (985)
-.+++.
T Consensus 95 GeeE~~ 100 (121)
T 1owx_A 95 GEVEKE 100 (121)
T ss_dssp HHHHHH
T ss_pred CHHHHH
Confidence 666665
No 376
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=98.62 E-value=1.5e-08 Score=93.52 Aligned_cols=84 Identities=20% Similarity=0.356 Sum_probs=72.6
Q ss_pred eeEEeecCCCCCCHHHHHHHHHhhCCCcceEE-Eecccccccce-eEEEEEecCCchhhHHHHHHhcCCcccCCCCcc-E
Q 001991 811 TTLMIKNIPNKYTSKMLLAAIDEHCRGTYDFI-YLPIDFKNKCN-VGYAFINMIDPRQIIPFHQAFNGKKWEKFNSEK-V 887 (985)
Q Consensus 811 TTvMirNIPnk~t~~~L~~~id~~~~g~yDF~-YlpiDf~~~~N-~GYaFiNf~~~~~~~~f~~~f~g~~w~~~~s~K-~ 887 (985)
-.|+||++|+.+|++.+++.|+.... .||+ |.|-|...+-+ ...|||||++++++..|.+.|+|+.|..-+... .
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~--~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSS--EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCc--cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 46999999999999999999987544 5777 68888877655 588999999999999999999999999776555 8
Q ss_pred EEEEeeccc
Q 001991 888 ASLAYARIQ 896 (985)
Q Consensus 888 ~~v~yA~iQ 896 (985)
+.|.||..|
T Consensus 88 a~VE~APyq 96 (97)
T 2l08_A 88 AVVEFAPFQ 96 (97)
T ss_dssp EEEEECCCC
T ss_pred eEEEecCCC
Confidence 999999887
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.46 E-value=1.6e-07 Score=86.26 Aligned_cols=74 Identities=26% Similarity=0.355 Sum_probs=63.4
Q ss_pred cccccceeeecCCCC-----CCH----HHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceE
Q 001991 357 DANQGTLVVFNLDSS-----VST----EELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQI 427 (985)
Q Consensus 357 ~~~~~tLfV~NLp~s-----vTe----edLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~I 427 (985)
.++..||+|.-++.+ +-+ .+|.+.|.+||+|..+++..+. +||+|.+.++|.+||+ |||.+++||.|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 456789999988743 222 6699999999999999998764 9999999999999999 99999999999
Q ss_pred EEEeccC
Q 001991 428 KLEASRP 434 (985)
Q Consensus 428 kV~~A~~ 434 (985)
+|.+..+
T Consensus 88 ~V~~k~~ 94 (95)
T 1ufw_A 88 KISGPSS 94 (95)
T ss_dssp EEECCCC
T ss_pred EEeccCC
Confidence 9987654
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.38 E-value=1.1e-06 Score=84.56 Aligned_cols=75 Identities=19% Similarity=0.186 Sum_probs=63.8
Q ss_pred CCCCCcEEEEecCCCC-CCHHHHHHhhcccCcEEEEEeccccceEEEEEeCC-HHHHHHHHHHcc--Ccccccccccccc
Q 001991 271 GEHPSRTLFVRNINSN-VEDSELKALFEQFGDIRTIYTACKHRGFVMISYYD-IRAARNAMKALQ--NKPLRRRKLDIHY 346 (985)
Q Consensus 271 ~e~~srtLfVgNLP~~-vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d-~esA~kAi~~Ln--g~~I~Gr~L~V~~ 346 (985)
.-.+.+.|||+||+.+ +++++|+++|++||+|..|.+ ......|||.|.+ .++|.+|++.++ +..|.|..+.+..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~-~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDF-VRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEEC-CTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEE-ecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 4557899999999999 999999999999999999988 2333479999999 899999999985 6778887766654
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.34 E-value=4.9e-07 Score=82.51 Aligned_cols=74 Identities=26% Similarity=0.344 Sum_probs=61.8
Q ss_pred CCCcEEEEecCCC----CCCH----HHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccc
Q 001991 273 HPSRTLFVRNINS----NVED----SELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDI 344 (985)
Q Consensus 273 ~~srtLfVgNLP~----~vTE----edLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V 344 (985)
.+..||+|.-.+. ++-+ .+|.+.|.+||+|..+++-. +.+||+|.+.++|.+|++ |+|..+.||.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 3667899988772 3434 67889999999999999832 339999999999999997 9999999999999
Q ss_pred cccCCC
Q 001991 345 HYSIPK 350 (985)
Q Consensus 345 ~~a~pk 350 (985)
+++.|.
T Consensus 81 ~lkt~d 86 (91)
T 2dnr_A 81 ALKSPS 86 (91)
T ss_dssp EECCCS
T ss_pred EeCCCC
Confidence 988753
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.34 E-value=5.6e-07 Score=93.65 Aligned_cols=64 Identities=19% Similarity=0.225 Sum_probs=57.5
Q ss_pred CCCHHHHHHHhhccCCEEEEEEc----C-----CCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 001991 371 SVSTEELHQIFGIYGEIREIRDT----Q-----HKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 434 (985)
Q Consensus 371 svTeedLrelFs~fG~I~~Vri~----~-----~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~ 434 (985)
.-.+++|++.|++||.|.+|.+. . ..+|++||+|.+.++|.+|++.|||+.++||.|.|.++..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 34678999999999999999885 2 3578999999999999999999999999999999999864
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.08 E-value=4.2e-06 Score=87.04 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=56.2
Q ss_pred CCHHHHHHhhcccCcEEEEEe---------ccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccC
Q 001991 287 VEDSELKALFEQFGDIRTIYT---------ACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSI 348 (985)
Q Consensus 287 vTEedLrelFs~fG~I~sVki---------tgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~ 348 (985)
-.+++|++.|++||+|.++.+ ++..+|++||+|.+.++|++|++.|||+.+.||.|.+.|..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 356899999999999999976 22788999999999999999999999999999999999874
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.03 E-value=1.2e-05 Score=75.39 Aligned_cols=72 Identities=28% Similarity=0.301 Sum_probs=66.6
Q ss_pred cccceeeecCCCCCCHHHHHHHhhcc-----CCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEe
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGIY-----GEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEA 431 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~f-----G~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~ 431 (985)
..++|-+.|||+.+++..|+.+.++| |.|+.|.+.++ -+-|+|+|.|...|.+|.-+|+|.+|.|++|+|.-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-CCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 36799999999999999999999999 99999998887 44599999999999999999999999999999964
No 383
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.01 E-value=5.3e-06 Score=76.19 Aligned_cols=72 Identities=14% Similarity=0.204 Sum_probs=60.2
Q ss_pred CCCcEEEEecCCCC-----CCH----HHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCccccccccc
Q 001991 273 HPSRTLFVRNINSN-----VED----SELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLD 343 (985)
Q Consensus 273 ~~srtLfVgNLP~~-----vTE----edLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~ 343 (985)
.|..||+|.-++.. +-+ .+|.+.|.+||+|..+++.... +||+|.+.++|.+||+ |+|..+.||.|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 47789999988753 323 5688999999999999872222 9999999999999997 999999999999
Q ss_pred ccccC
Q 001991 344 IHYSI 348 (985)
Q Consensus 344 V~~a~ 348 (985)
|++..
T Consensus 89 V~~k~ 93 (95)
T 1ufw_A 89 ISGPS 93 (95)
T ss_dssp EECCC
T ss_pred EeccC
Confidence 98754
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.30 E-value=0.0016 Score=60.61 Aligned_cols=89 Identities=17% Similarity=0.206 Sum_probs=73.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcc-----cCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCccccccccccccc
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQ-----FGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYS 347 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~-----fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a 347 (985)
...++|.|.|||+.++++.|.-+|+. =|+|..+.... +-|+|+|.+.+.|++.++ .....|.+.+|.|...
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLA-QADHELHGAQLSLRPA 81 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEEC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcC
Confidence 34589999999999999999999987 26899998744 789999999999999994 4467888888988665
Q ss_pred CCCCCCCcccccccceeeecCCCCCC
Q 001991 348 IPKDNPSEKDANQGTLVVFNLDSSVS 373 (985)
Q Consensus 348 ~pk~~~~~~~~~~~tLfV~NLp~svT 373 (985)
.++ ...+|++.+|++.++
T Consensus 82 ~~~--------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 82 PPR--------APARLLLQGLPPGTS 99 (104)
T ss_dssp CCC--------CCCCCCCCSCCCCCC
T ss_pred CCC--------CcceEeeecCCCCCC
Confidence 443 345899999998775
No 385
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.00054 Score=64.43 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=64.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhccc-----CcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCccccccccccc
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQF-----GDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIH 345 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~f-----G~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~ 345 (985)
...++|-+-|||..++++.|+.+.+++ |.|+.+.+. ...+=|+|+|.|...|-+|.-.|+|.+|.|++|++.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~-pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLV-SDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEE-TTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEe-cCCCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 346899999999999999999999999 999999883 344569999999999999998999999999999884
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.81 E-value=0.004 Score=58.01 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=66.1
Q ss_pred cccceeeecCCCCCCHHHHHHHhhc-----cCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEecc
Q 001991 359 NQGTLVVFNLDSSVSTEELHQIFGI-----YGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASR 433 (985)
Q Consensus 359 ~~~tLfV~NLp~svTeedLrelFs~-----fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~ 433 (985)
...+|.|.|||+.++++.|.-.|+. =|+|..|...+ +-|+|+|.+.+.|++.++ -....|.+.+|.|....
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLA-QADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCC
Confidence 3568999999999999999999987 26899998765 789999999999999987 33678899999999988
Q ss_pred Ccchhh
Q 001991 434 PGGARR 439 (985)
Q Consensus 434 ~k~~Rr 439 (985)
++..++
T Consensus 83 ~~~~~r 88 (104)
T 2dhx_A 83 PRAPAR 88 (104)
T ss_dssp CCCCCC
T ss_pred CCCcce
Confidence 877666
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.76 E-value=0.0013 Score=61.46 Aligned_cols=76 Identities=18% Similarity=0.233 Sum_probs=63.8
Q ss_pred ccceeeecCCCCC-C----HHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCCceEEEEeccC
Q 001991 360 QGTLVVFNLDSSV-S----TEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAGKQIKLEASRP 434 (985)
Q Consensus 360 ~~tLfV~NLp~sv-T----eedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~Gr~IkV~~A~~ 434 (985)
.++|+|.||+.++ . .+.++++|..|+++......+.-+ -..|.|.++++|.+|-..|++..+.|++|+|-++++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK-RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT-EEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce-EEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 3589999998866 2 367899999999988876655433 468999999999999999999999999999999985
Q ss_pred cc
Q 001991 435 GG 436 (985)
Q Consensus 435 k~ 436 (985)
-.
T Consensus 84 ~~ 85 (104)
T 1wey_A 84 LH 85 (104)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.46 E-value=0.0097 Score=56.89 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=63.4
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhCCceeCC-ceEEEEeccCcc
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLNRSDVAG-KQIKLEASRPGG 436 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LNG~~I~G-r~IkV~~A~~k~ 436 (985)
.....|.|.+.|+.. ...+.+.|++||+|.+... .....+-.|+|.+..+|++||. .||..|+| -.|-|.+...+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~d~~ 98 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCIDKN 98 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECCCHH
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECCCHH
Confidence 456789999999985 5678889999999999876 4457899999999999999999 79999984 778888765443
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.17 E-value=0.0051 Score=57.41 Aligned_cols=76 Identities=16% Similarity=0.202 Sum_probs=62.8
Q ss_pred CcEEEEecCCCCC-CH----HHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCcccccccccccccCC
Q 001991 275 SRTLFVRNINSNV-ED----SELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHYSIP 349 (985)
Q Consensus 275 srtLfVgNLP~~v-TE----edLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~Gr~L~V~~a~p 349 (985)
.++|+|.||+.+| .. +.++++|..|+++.....-. +=.-..|.|.+.++|.+|-..|++..+.|++|+|-|+++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk-SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK-SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET-TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC-cceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 4789999999876 32 56789999999988876523 333568999999999999999999999999999999985
Q ss_pred CC
Q 001991 350 KD 351 (985)
Q Consensus 350 k~ 351 (985)
..
T Consensus 84 ~~ 85 (104)
T 1wey_A 84 LH 85 (104)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.15 E-value=0.049 Score=49.72 Aligned_cols=65 Identities=5% Similarity=0.051 Sum_probs=53.4
Q ss_pred cEEEEecCCCCCCHHHHHHhhcccCcEEEEEe-ccc------cceEEEEEeCCHHHHHHHHHHccCcccccc
Q 001991 276 RTLFVRNINSNVEDSELKALFEQFGDIRTIYT-ACK------HRGFVMISYYDIRAARNAMKALQNKPLRRR 340 (985)
Q Consensus 276 rtLfVgNLP~~vTEedLrelFs~fG~I~sVki-tgk------srGfAFV~F~d~esA~kAi~~Lng~~I~Gr 340 (985)
++|.|++||+.+||+++.+.++.+.++..... .|+ .-.-|||.|.+.+++....+.++|..+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 57999999999999999999999987765532 222 234799999999999999999999887643
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.34 E-value=0.092 Score=48.49 Aligned_cols=56 Identities=20% Similarity=0.306 Sum_probs=46.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHcc
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQ 333 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Ln 333 (985)
..+.++| ++|+.+...||.++|+.||.|.--.+ ....|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE---ETTEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 3456667 99999999999999999996554444 34589999999999999998764
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.18 E-value=0.099 Score=49.96 Aligned_cols=71 Identities=15% Similarity=0.169 Sum_probs=57.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccCccccc-ccccccc
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQNKPLRR-RKLDIHY 346 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng~~I~G-r~L~V~~ 346 (985)
...+-|.|-+.|+.. ...|.+.|++||+|..... .....+..|.|.+..+|++||. .||+.|.| -.|-|..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 346889999999974 6778889999999999887 3456799999999999999995 79998875 4444443
No 393
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.98 E-value=0.04 Score=53.47 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=57.4
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCEEE-EEEc----------------CC--CCcEEEEEEcCHHHHHHHHHHhCCc
Q 001991 360 QGTLVVFNLDSSVSTEELHQIFGIYGEIRE-IRDT----------------QH--KHNHKFIEFYDIRAAETALRTLNRS 420 (985)
Q Consensus 360 ~~tLfV~NLp~svTeedLrelFs~fG~I~~-Vri~----------------~~--skGfaFVeF~d~edA~kAI~~LNG~ 420 (985)
...|.|.+.|++.+ ..+.+.|++||.|.+ +... +. ..++..|+|++..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 34688889977765 456678999999977 2111 11 35688999999999999999 8999
Q ss_pred eeCCceEEEEeccC
Q 001991 421 DVAGKQIKLEASRP 434 (985)
Q Consensus 421 ~I~Gr~IkV~~A~~ 434 (985)
.|+|..|-|.+..+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999999999863
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.09 E-value=0.081 Score=48.96 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=44.7
Q ss_pred cEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHcc
Q 001991 276 RTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQ 333 (985)
Q Consensus 276 rtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Ln 333 (985)
+.++| ++|+.+.-.||.++|+.||.|.--.+ .-..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEE---ETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 45566 99999999999999999995554444 34589999999999999998765
No 395
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.39 E-value=0.058 Score=62.57 Aligned_cols=56 Identities=11% Similarity=0.282 Sum_probs=43.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHH
Q 001991 274 PSRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMK 330 (985)
Q Consensus 274 ~srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~ 330 (985)
..|+|||. .|..+++.+|.++|++||+|.++.......-||.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 45899998 799999999999999999999998855555699999999999997764
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.12 E-value=0.053 Score=62.91 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=45.3
Q ss_pred ccccceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHH
Q 001991 358 ANQGTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALR 415 (985)
Q Consensus 358 ~~~~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~ 415 (985)
...++|+|. .+..+++.+|.+.|++||.|.++....+...|+.|||.+.+++.+++.
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 456789997 799999999999999999999998888777899999999999997765
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=91.50 E-value=0.12 Score=47.91 Aligned_cols=53 Identities=23% Similarity=0.360 Sum_probs=44.1
Q ss_pred ceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhC
Q 001991 362 TLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLN 418 (985)
Q Consensus 362 tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LN 418 (985)
.++| ++|+.+...||.++|+.||.| .|+.+. ...|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~Wid--DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID--DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEE--TTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEc--CCeEEEEecCHHHHHHHHHhcc
Confidence 4566 999999999999999999943 344443 5789999999999999999775
No 398
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=91.43 E-value=0.18 Score=46.49 Aligned_cols=54 Identities=22% Similarity=0.347 Sum_probs=43.8
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhC
Q 001991 361 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLN 418 (985)
Q Consensus 361 ~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LN 418 (985)
..++| ++|+.+...||.++|+.||.|. |+.+. ...|||.|.+++.|..|+..++
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~Wid--DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWID--DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEE--TTEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEc--CCeEEEEecCHHHHHHHHHhcc
Confidence 35556 9999999999999999999543 33332 5689999999999999999763
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=90.69 E-value=0.37 Score=44.44 Aligned_cols=68 Identities=9% Similarity=0.067 Sum_probs=52.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHhhcccCcEEEEE-eccc------cceEEEEEeCCHHHHHHHHHHccCcccccc
Q 001991 273 HPSRTLFVRNINSNVEDSELKALFEQFGDIRTIY-TACK------HRGFVMISYYDIRAARNAMKALQNKPLRRR 340 (985)
Q Consensus 273 ~~srtLfVgNLP~~vTEedLrelFs~fG~I~sVk-itgk------srGfAFV~F~d~esA~kAi~~Lng~~I~Gr 340 (985)
..+-+|.|+.||+.+||+++.+.++.+=++...+ +.|+ .-.-|||.|.+.++.....+..+|..+.+.
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 3567899999999999999998888765543322 1111 123699999999999999999999887643
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=87.66 E-value=0.41 Score=46.41 Aligned_cols=71 Identities=15% Similarity=0.191 Sum_probs=52.8
Q ss_pred CcEEEEecCCCCCCHHHHHHhhcccCcEEEEE-ecc------------------ccceEEEEEeCCHHHHHHHHHHccCc
Q 001991 275 SRTLFVRNINSNVEDSELKALFEQFGDIRTIY-TAC------------------KHRGFVMISYYDIRAARNAMKALQNK 335 (985)
Q Consensus 275 srtLfVgNLP~~vTEedLrelFs~fG~I~sVk-itg------------------ksrGfAFV~F~d~esA~kAi~~Lng~ 335 (985)
...|.|-+.|++ ....+.+.|++||.|..-. ... ....+..|+|.+..+|++|+. .||+
T Consensus 7 e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 456888888764 4556778899999998732 110 134588999999999999994 8999
Q ss_pred cccccccccccc
Q 001991 336 PLRRRKLDIHYS 347 (985)
Q Consensus 336 ~I~Gr~L~V~~a 347 (985)
.|.|.-|-|...
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 999876666544
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=66.47 E-value=10 Score=44.42 Aligned_cols=56 Identities=20% Similarity=0.299 Sum_probs=46.5
Q ss_pred CcEEEEecCCCCCCHHHHHHhhcccCcEEEEEeccccceEEEEEeCCHHHHHHHHHHccC
Q 001991 275 SRTLFVRNINSNVEDSELKALFEQFGDIRTIYTACKHRGFVMISYYDIRAARNAMKALQN 334 (985)
Q Consensus 275 srtLfVgNLP~~vTEedLrelFs~fG~I~sVkitgksrGfAFV~F~d~esA~kAi~~Lng 334 (985)
...++|+ +|+.+...+|.++|+.||.|.-..+ ....|||.|.+.+.|..+++++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wi---ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEEC---SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEE---cCCeEEEEECCHHHHHHHHHHHHh
Confidence 4577776 9999999999999999997655555 445799999999999999988753
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=50.66 E-value=23 Score=41.47 Aligned_cols=54 Identities=22% Similarity=0.329 Sum_probs=44.5
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCEEEEEEcCCCCcEEEEEEcCHHHHHHHHHHhC
Q 001991 361 GTLVVFNLDSSVSTEELHQIFGIYGEIREIRDTQHKHNHKFIEFYDIRAAETALRTLN 418 (985)
Q Consensus 361 ~tLfV~NLp~svTeedLrelFs~fG~I~~Vri~~~skGfaFVeF~d~edA~kAI~~LN 418 (985)
..++|+ +|..+...+|.++|+.||.| +|+.+ ....|||.|.+.+.|..+++.++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wi--ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWI--DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEEC--SSSEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEE--cCCeEEEEECCHHHHHHHHHHHH
Confidence 356665 99999999999999999964 44444 35679999999999999999885
Done!