Query 001993
Match_columns 985
No_of_seqs 518 out of 4719
Neff 9.6
Searched_HMMs 46136
Date Thu Mar 28 14:06:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001993.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001993hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 5.1E-85 1.1E-89 777.6 45.0 821 3-948 2-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 6.8E-62 1.5E-66 614.4 46.8 663 179-952 185-907 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 2E-42 4.3E-47 376.0 16.2 279 183-481 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 2.2E-22 4.7E-27 256.1 16.8 325 602-949 138-486 (968)
5 PLN00113 leucine-rich repeat r 99.9 5.4E-22 1.2E-26 252.5 14.4 372 551-950 164-559 (968)
6 KOG0444 Cytoskeletal regulator 99.9 2.6E-23 5.7E-28 223.3 -2.1 336 569-966 47-393 (1255)
7 KOG4194 Membrane glycoprotein 99.8 1.4E-20 3E-25 201.8 5.5 337 577-946 78-447 (873)
8 PLN03210 Resistant to P. syrin 99.8 7.5E-19 1.6E-23 223.4 18.5 341 550-952 588-944 (1153)
9 KOG0444 Cytoskeletal regulator 99.8 1.7E-21 3.7E-26 209.4 -5.0 320 551-931 55-379 (1255)
10 KOG4194 Membrane glycoprotein 99.8 1.9E-20 4.1E-25 200.7 1.7 331 552-921 103-446 (873)
11 KOG0472 Leucine-rich repeat pr 99.7 3.5E-20 7.5E-25 190.4 -8.4 357 551-948 45-468 (565)
12 KOG0472 Leucine-rich repeat pr 99.7 1.3E-19 2.8E-24 186.3 -11.1 147 555-713 72-220 (565)
13 KOG0618 Serine/threonine phosp 99.6 4.5E-17 9.8E-22 184.7 -3.5 304 600-931 41-423 (1081)
14 PRK15387 E3 ubiquitin-protein 99.5 2.8E-13 6.1E-18 159.8 12.5 252 606-949 203-456 (788)
15 KOG0618 Serine/threonine phosp 99.4 3.1E-15 6.7E-20 170.0 -8.4 99 553-659 47-147 (1081)
16 PRK04841 transcriptional regul 99.4 4.1E-11 8.9E-16 152.2 26.8 276 215-532 31-332 (903)
17 KOG4658 Apoptotic ATPase [Sign 99.4 2.9E-13 6.3E-18 163.4 4.4 309 572-953 518-844 (889)
18 PRK00411 cdc6 cell division co 99.3 5.8E-10 1.3E-14 126.9 27.5 303 179-507 31-360 (394)
19 KOG0617 Ras suppressor protein 99.3 2.4E-13 5.2E-18 124.3 -3.7 133 572-713 28-164 (264)
20 PRK15370 E3 ubiquitin-protein 99.2 1.1E-11 2.3E-16 147.7 8.9 89 606-707 180-270 (754)
21 TIGR02928 orc1/cdc6 family rep 99.2 2.6E-09 5.7E-14 120.3 27.3 304 179-507 16-352 (365)
22 TIGR03015 pepcterm_ATPase puta 99.2 1.4E-09 3E-14 116.8 21.2 185 215-405 42-242 (269)
23 PRK15387 E3 ubiquitin-protein 99.2 5.7E-11 1.2E-15 140.5 10.7 91 577-685 222-314 (788)
24 KOG0617 Ras suppressor protein 99.2 1E-12 2.2E-17 120.3 -3.5 161 621-832 29-189 (264)
25 PF01637 Arch_ATPase: Archaeal 99.1 1.9E-10 4.2E-15 120.9 9.4 197 180-400 1-233 (234)
26 PRK15370 E3 ubiquitin-protein 99.1 1.7E-10 3.7E-15 137.6 9.3 243 553-895 180-425 (754)
27 PRK00080 ruvB Holliday junctio 99.1 2.2E-09 4.7E-14 118.1 16.4 277 179-505 26-310 (328)
28 TIGR00635 ruvB Holliday juncti 99.1 2.3E-09 5E-14 117.3 15.1 276 179-505 5-289 (305)
29 COG2909 MalT ATP-dependent tra 99.0 5.8E-08 1.3E-12 111.6 25.0 283 214-534 35-340 (894)
30 PF05729 NACHT: NACHT domain 98.9 9E-09 2E-13 101.6 11.4 143 217-367 1-163 (166)
31 KOG4237 Extracellular matrix p 98.9 1.5E-10 3.2E-15 120.3 -3.5 261 578-857 68-340 (498)
32 COG2256 MGS1 ATPase related to 98.8 6.6E-08 1.4E-12 102.1 14.3 176 173-398 26-209 (436)
33 KOG4237 Extracellular matrix p 98.8 2.6E-10 5.6E-15 118.5 -3.6 117 608-730 73-193 (498)
34 KOG4341 F-box protein containi 98.8 2.4E-10 5.1E-15 119.9 -4.5 167 786-981 291-468 (483)
35 PTZ00112 origin recognition co 98.8 1.9E-07 4.1E-12 108.2 18.0 214 179-405 756-986 (1164)
36 cd00116 LRR_RI Leucine-rich re 98.8 4E-10 8.7E-15 124.6 -4.1 83 598-681 17-116 (319)
37 PRK13342 recombination factor 98.7 1.7E-07 3.7E-12 106.4 16.1 179 179-404 13-199 (413)
38 COG3899 Predicted ATPase [Gene 98.7 1.6E-07 3.6E-12 114.6 16.9 316 180-531 2-385 (849)
39 KOG0532 Leucine-rich repeat (L 98.7 6.7E-10 1.5E-14 120.7 -3.4 125 574-708 72-198 (722)
40 PRK06893 DNA replication initi 98.7 1.3E-07 2.8E-12 98.1 12.8 155 217-405 40-207 (229)
41 cd00116 LRR_RI Leucine-rich re 98.7 3.7E-09 8.1E-14 116.9 1.2 243 570-849 16-289 (319)
42 PTZ00202 tuzin; Provisional 98.6 6.6E-06 1.4E-10 88.8 22.9 163 179-366 263-433 (550)
43 PF13401 AAA_22: AAA domain; P 98.6 7.6E-08 1.7E-12 90.7 7.7 118 215-334 3-125 (131)
44 PRK14960 DNA polymerase III su 98.6 9.9E-07 2.1E-11 101.1 16.6 193 179-400 16-218 (702)
45 PRK14961 DNA polymerase III su 98.6 1.5E-06 3.3E-11 96.7 18.1 191 179-399 17-218 (363)
46 PRK07003 DNA polymerase III su 98.6 1E-06 2.3E-11 101.9 16.8 179 179-400 17-220 (830)
47 PRK14949 DNA polymerase III su 98.6 9.7E-07 2.1E-11 104.3 16.7 181 179-401 17-220 (944)
48 TIGR03420 DnaA_homol_Hda DnaA 98.6 7.6E-07 1.6E-11 92.8 14.3 157 215-405 37-205 (226)
49 PRK05564 DNA polymerase III su 98.5 2.4E-06 5.2E-11 93.4 17.3 178 179-399 5-188 (313)
50 PF13191 AAA_16: AAA ATPase do 98.5 1.6E-07 3.4E-12 94.7 7.4 47 179-239 1-47 (185)
51 PRK12323 DNA polymerase III su 98.5 1.8E-06 4E-11 98.7 16.4 196 179-401 17-225 (700)
52 KOG3207 Beta-tubulin folding c 98.5 2.2E-08 4.7E-13 106.0 0.3 214 621-925 117-337 (505)
53 COG1474 CDC6 Cdc6-related prot 98.5 6.1E-06 1.3E-10 90.7 19.1 208 179-401 18-238 (366)
54 PRK12402 replication factor C 98.5 2.6E-06 5.7E-11 94.8 16.4 197 179-400 16-225 (337)
55 cd00009 AAA The AAA+ (ATPases 98.5 1.1E-06 2.5E-11 84.5 11.7 125 181-336 1-131 (151)
56 PF05496 RuvB_N: Holliday junc 98.5 1.6E-06 3.6E-11 85.8 12.5 180 179-403 25-223 (233)
57 PRK14957 DNA polymerase III su 98.5 4.4E-06 9.5E-11 96.0 17.5 185 179-403 17-223 (546)
58 PRK04195 replication factor C 98.5 1.1E-05 2.4E-10 93.5 21.1 186 179-405 15-206 (482)
59 PRK14963 DNA polymerase III su 98.4 6.3E-07 1.4E-11 102.8 10.3 194 179-398 15-214 (504)
60 PRK08691 DNA polymerase III su 98.4 3.4E-06 7.4E-11 97.8 16.1 180 179-401 17-220 (709)
61 PRK07471 DNA polymerase III su 98.4 1.1E-06 2.3E-11 96.8 11.3 195 179-401 20-238 (365)
62 PLN03025 replication factor C 98.4 6E-06 1.3E-10 90.5 17.2 182 179-398 14-197 (319)
63 PRK07994 DNA polymerase III su 98.4 4.3E-06 9.4E-11 97.5 16.1 194 179-401 17-220 (647)
64 PRK00440 rfc replication facto 98.4 6.1E-06 1.3E-10 91.1 16.7 182 179-400 18-202 (319)
65 PRK14964 DNA polymerase III su 98.4 6.7E-06 1.4E-10 93.1 16.9 181 179-398 14-214 (491)
66 PRK06645 DNA polymerase III su 98.4 9.3E-06 2E-10 92.8 18.1 194 179-398 22-226 (507)
67 PRK14956 DNA polymerase III su 98.4 3.6E-06 7.8E-11 94.0 14.2 195 179-399 19-220 (484)
68 PRK09112 DNA polymerase III su 98.4 5.6E-06 1.2E-10 90.7 15.3 193 179-401 24-240 (351)
69 TIGR00678 holB DNA polymerase 98.4 1.2E-05 2.6E-10 80.9 16.4 91 294-396 95-186 (188)
70 PF13173 AAA_14: AAA domain 98.4 1.2E-06 2.7E-11 81.8 8.6 121 217-359 3-127 (128)
71 KOG2028 ATPase related to the 98.4 3.7E-06 8.1E-11 87.0 12.5 162 213-396 159-331 (554)
72 PRK14951 DNA polymerase III su 98.4 8.5E-06 1.8E-10 95.0 16.7 197 179-401 17-225 (618)
73 PRK07940 DNA polymerase III su 98.4 1.2E-05 2.7E-10 89.2 17.2 184 179-401 6-213 (394)
74 PRK08727 hypothetical protein; 98.4 1.4E-05 3.1E-10 83.0 16.7 149 217-399 42-202 (233)
75 PRK05896 DNA polymerase III su 98.4 1E-05 2.2E-10 93.0 16.9 195 179-402 17-222 (605)
76 PRK14958 DNA polymerase III su 98.3 9.2E-06 2E-10 93.6 16.5 183 179-400 17-219 (509)
77 TIGR02903 spore_lon_C ATP-depe 98.3 1E-05 2.3E-10 95.7 17.4 202 179-404 155-398 (615)
78 PRK14962 DNA polymerase III su 98.3 1.5E-05 3.2E-10 90.9 17.5 188 179-405 15-223 (472)
79 PRK13341 recombination factor 98.3 7.7E-06 1.7E-10 97.6 15.6 174 179-397 29-213 (725)
80 PF14580 LRR_9: Leucine-rich r 98.3 1.2E-07 2.7E-12 92.0 0.4 129 787-948 17-150 (175)
81 PRK14969 DNA polymerase III su 98.3 2.8E-05 6E-10 90.4 18.9 180 179-401 17-221 (527)
82 TIGR02397 dnaX_nterm DNA polym 98.3 2.6E-05 5.7E-10 87.5 18.4 184 179-402 15-219 (355)
83 cd01128 rho_factor Transcripti 98.3 1.2E-06 2.6E-11 90.8 6.6 90 215-305 15-113 (249)
84 COG4886 Leucine-rich repeat (L 98.3 7.4E-07 1.6E-11 101.6 5.2 105 600-709 112-219 (394)
85 COG3903 Predicted ATPase [Gene 98.3 1.4E-06 3E-11 93.1 6.8 238 214-464 12-258 (414)
86 PRK08903 DnaA regulatory inact 98.3 1.8E-05 4E-10 82.3 15.1 152 216-405 42-203 (227)
87 PRK14955 DNA polymerase III su 98.3 2.2E-05 4.9E-10 88.5 16.8 199 179-400 17-227 (397)
88 KOG2227 Pre-initiation complex 98.2 2E-05 4.2E-10 85.1 14.6 214 179-405 151-376 (529)
89 PRK08084 DNA replication initi 98.2 4E-05 8.7E-10 79.7 16.9 156 216-405 45-213 (235)
90 PF05621 TniB: Bacterial TniB 98.2 3.6E-05 7.9E-10 80.2 15.9 200 185-398 44-258 (302)
91 PF14580 LRR_9: Leucine-rich r 98.2 8.4E-07 1.8E-11 86.2 3.2 82 624-709 41-123 (175)
92 PRK14959 DNA polymerase III su 98.2 4.1E-05 8.9E-10 88.6 16.8 197 179-405 17-225 (624)
93 PRK07764 DNA polymerase III su 98.2 3.9E-05 8.4E-10 92.9 17.2 190 179-398 16-218 (824)
94 PRK09087 hypothetical protein; 98.2 4.5E-05 9.7E-10 78.5 15.2 145 217-405 45-199 (226)
95 PRK14952 DNA polymerase III su 98.2 5.9E-05 1.3E-09 87.8 17.8 198 179-405 14-224 (584)
96 PRK09111 DNA polymerase III su 98.2 4.6E-05 9.9E-10 89.2 17.0 194 179-401 25-233 (598)
97 PRK09376 rho transcription ter 98.2 4.4E-06 9.5E-11 90.0 7.8 90 215-305 168-266 (416)
98 KOG2543 Origin recognition com 98.1 0.00014 3.1E-09 76.7 18.0 168 179-365 7-191 (438)
99 PF00308 Bac_DnaA: Bacterial d 98.1 4.8E-05 1E-09 78.1 14.5 165 214-403 32-210 (219)
100 KOG1259 Nischarin, modulator o 98.1 5.9E-07 1.3E-11 90.3 0.0 108 756-896 303-410 (490)
101 PRK14953 DNA polymerase III su 98.1 0.00011 2.3E-09 84.4 18.3 180 179-402 17-221 (486)
102 PRK14970 DNA polymerase III su 98.1 7.8E-05 1.7E-09 83.7 17.0 176 179-398 18-206 (367)
103 PRK07133 DNA polymerase III su 98.1 8.5E-05 1.8E-09 87.4 17.6 187 179-398 19-216 (725)
104 PRK14950 DNA polymerase III su 98.1 3.7E-05 8.1E-10 91.0 14.9 196 179-403 17-223 (585)
105 PRK14087 dnaA chromosomal repl 98.1 9.3E-05 2E-09 84.3 16.9 169 216-405 141-323 (450)
106 PF14516 AAA_35: AAA-like doma 98.1 0.00065 1.4E-08 74.6 23.0 201 179-408 12-246 (331)
107 PRK14954 DNA polymerase III su 98.1 0.00012 2.7E-09 85.8 17.9 201 179-401 17-229 (620)
108 PRK05642 DNA replication initi 98.1 0.00011 2.4E-09 76.3 15.7 156 216-405 45-212 (234)
109 KOG2120 SCF ubiquitin ligase, 98.0 1.1E-07 2.5E-12 95.5 -6.7 117 752-896 252-374 (419)
110 KOG4341 F-box protein containi 98.0 2.8E-07 6E-12 97.3 -4.1 264 626-956 139-419 (483)
111 PRK08451 DNA polymerase III su 98.0 0.00017 3.6E-09 82.7 17.8 180 179-401 15-218 (535)
112 KOG1259 Nischarin, modulator o 98.0 1.4E-06 3.1E-11 87.6 0.6 132 573-713 280-413 (490)
113 TIGR01242 26Sp45 26S proteasom 98.0 5E-05 1.1E-09 85.0 12.6 186 179-395 123-328 (364)
114 KOG0989 Replication factor C, 98.0 6.2E-05 1.3E-09 77.1 11.8 184 179-396 37-225 (346)
115 PHA02544 44 clamp loader, smal 98.0 7.1E-05 1.5E-09 82.4 13.1 148 179-365 22-171 (316)
116 KOG0532 Leucine-rich repeat (L 98.0 3.5E-07 7.6E-12 100.1 -5.1 133 570-713 114-248 (722)
117 PRK06305 DNA polymerase III su 97.9 0.00018 3.9E-09 82.0 16.2 173 179-396 18-217 (451)
118 PRK14948 DNA polymerase III su 97.9 0.00026 5.7E-09 83.6 17.9 195 179-401 17-222 (620)
119 KOG2120 SCF ubiquitin ligase, 97.9 4.3E-07 9.3E-12 91.4 -4.4 161 756-949 206-374 (419)
120 PRK06620 hypothetical protein; 97.9 0.00024 5.2E-09 72.5 15.4 137 217-401 45-189 (214)
121 KOG1909 Ran GTPase-activating 97.9 9.8E-07 2.1E-11 91.3 -2.2 148 758-925 155-309 (382)
122 PRK14971 DNA polymerase III su 97.9 0.00029 6.4E-09 83.2 18.0 177 179-399 18-220 (614)
123 PRK14965 DNA polymerase III su 97.9 0.00024 5.3E-09 83.7 17.2 193 179-401 17-221 (576)
124 PRK11331 5-methylcytosine-spec 97.9 5E-05 1.1E-09 84.0 10.6 120 179-320 176-298 (459)
125 TIGR00767 rho transcription te 97.9 3.5E-05 7.6E-10 83.7 9.1 90 215-305 167-265 (415)
126 COG4886 Leucine-rich repeat (L 97.9 7.3E-06 1.6E-10 93.4 4.1 124 573-705 112-238 (394)
127 TIGR03345 VI_ClpV1 type VI sec 97.9 0.0001 2.2E-09 90.5 14.0 154 179-366 188-362 (852)
128 PRK06647 DNA polymerase III su 97.9 0.00034 7.4E-09 81.6 17.5 194 179-401 17-220 (563)
129 KOG3207 Beta-tubulin folding c 97.9 2.7E-06 5.8E-11 90.5 -0.3 151 550-706 120-278 (505)
130 COG2255 RuvB Holliday junction 97.8 0.00044 9.5E-09 70.2 14.8 176 179-399 27-221 (332)
131 CHL00181 cbbX CbbX; Provisiona 97.8 0.00076 1.7E-08 72.1 17.8 138 217-370 60-212 (287)
132 PRK07399 DNA polymerase III su 97.8 0.00064 1.4E-08 73.6 17.2 196 179-401 5-221 (314)
133 TIGR00362 DnaA chromosomal rep 97.8 0.00053 1.2E-08 78.0 17.5 159 216-399 136-308 (405)
134 PRK05563 DNA polymerase III su 97.8 0.0006 1.3E-08 80.0 18.1 190 179-399 17-218 (559)
135 PRK05707 DNA polymerase III su 97.8 0.00037 8E-09 75.8 15.2 169 215-401 21-203 (328)
136 PLN03150 hypothetical protein; 97.8 2.3E-05 5E-10 93.7 6.4 90 606-697 420-512 (623)
137 PF13855 LRR_8: Leucine rich r 97.8 1.9E-05 4E-10 62.7 3.7 57 625-683 1-59 (61)
138 PF12799 LRR_4: Leucine Rich r 97.7 3.3E-05 7.2E-10 56.1 3.9 40 625-666 1-40 (44)
139 TIGR02639 ClpA ATP-dependent C 97.7 0.00019 4.2E-09 87.5 12.7 157 179-367 183-358 (731)
140 TIGR02880 cbbX_cfxQ probable R 97.7 0.00048 1E-08 73.7 14.2 136 218-369 60-210 (284)
141 TIGR02881 spore_V_K stage V sp 97.7 0.00049 1.1E-08 73.1 14.0 173 179-369 7-193 (261)
142 PF00004 AAA: ATPase family as 97.7 0.00011 2.3E-09 69.2 8.0 97 219-335 1-112 (132)
143 PRK03992 proteasome-activating 97.7 0.00025 5.5E-09 79.6 12.1 186 179-395 132-337 (389)
144 PLN03150 hypothetical protein; 97.7 6.4E-05 1.4E-09 89.9 7.6 103 578-683 419-525 (623)
145 KOG0991 Replication factor C, 97.7 0.00065 1.4E-08 66.6 12.7 103 179-320 28-138 (333)
146 PRK00149 dnaA chromosomal repl 97.7 0.0011 2.3E-08 76.6 16.9 159 216-399 148-320 (450)
147 PRK15386 type III secretion pr 97.7 0.00011 2.3E-09 80.5 8.1 64 623-694 50-113 (426)
148 PRK14088 dnaA chromosomal repl 97.7 0.00062 1.4E-08 77.6 14.7 160 216-399 130-303 (440)
149 COG3267 ExeA Type II secretory 97.7 0.0018 3.9E-08 65.2 15.7 184 214-404 49-248 (269)
150 PRK12422 chromosomal replicati 97.6 0.0012 2.7E-08 75.0 16.2 154 216-394 141-306 (445)
151 PRK08116 hypothetical protein; 97.6 0.00027 5.9E-09 74.8 9.8 104 217-335 115-221 (268)
152 CHL00095 clpC Clp protease ATP 97.6 0.00043 9.3E-09 85.6 12.8 153 179-365 180-352 (821)
153 PRK14086 dnaA chromosomal repl 97.6 0.0031 6.8E-08 73.0 18.5 157 217-398 315-485 (617)
154 smart00382 AAA ATPases associa 97.6 0.00045 9.7E-09 65.7 10.2 88 217-308 3-91 (148)
155 KOG0531 Protein phosphatase 1, 97.6 1.3E-05 2.8E-10 91.5 -1.0 82 600-685 91-174 (414)
156 PRK08769 DNA polymerase III su 97.6 0.0018 3.9E-08 69.8 15.3 97 294-402 112-209 (319)
157 PRK08058 DNA polymerase III su 97.5 0.0012 2.7E-08 72.3 14.3 162 179-366 6-181 (329)
158 PRK11034 clpA ATP-dependent Cl 97.5 0.00053 1.2E-08 82.6 12.0 156 179-366 187-361 (758)
159 PTZ00361 26 proteosome regulat 97.5 0.00055 1.2E-08 77.0 10.8 166 179-369 184-369 (438)
160 PF13855 LRR_8: Leucine rich r 97.5 8.4E-05 1.8E-09 59.0 3.0 55 605-660 2-60 (61)
161 PRK06871 DNA polymerase III su 97.5 0.00049 1.1E-08 74.2 9.7 163 216-398 24-200 (325)
162 PF13177 DNA_pol3_delta2: DNA 97.5 0.0011 2.4E-08 64.4 11.3 120 182-336 1-143 (162)
163 TIGR03346 chaperone_ClpB ATP-d 97.5 0.00093 2E-08 82.9 13.2 154 179-366 174-348 (852)
164 COG0593 DnaA ATPase involved i 97.4 0.002 4.3E-08 70.9 13.8 139 215-372 112-262 (408)
165 PRK10536 hypothetical protein; 97.4 0.0028 6E-08 65.1 13.6 136 179-337 56-215 (262)
166 KOG0531 Protein phosphatase 1, 97.4 4.2E-05 9.2E-10 87.3 0.5 83 620-709 90-172 (414)
167 KOG1909 Ran GTPase-activating 97.4 4.2E-05 9E-10 79.6 0.3 255 572-849 25-309 (382)
168 PRK06090 DNA polymerase III su 97.4 0.0064 1.4E-07 65.5 16.8 165 215-401 24-201 (319)
169 PF05673 DUF815: Protein of un 97.4 0.0073 1.6E-07 61.3 15.7 122 179-338 28-154 (249)
170 PRK15386 type III secretion pr 97.3 0.00026 5.6E-09 77.5 5.6 68 783-857 46-113 (426)
171 PRK10865 protein disaggregatio 97.3 0.0013 2.7E-08 81.4 12.2 155 179-367 179-354 (857)
172 PRK07993 DNA polymerase III su 97.3 0.0053 1.1E-07 67.1 15.7 164 215-399 23-202 (334)
173 TIGR00602 rad24 checkpoint pro 97.3 0.0017 3.7E-08 76.2 12.3 49 179-239 85-133 (637)
174 PRK06964 DNA polymerase III su 97.3 0.0012 2.7E-08 71.7 10.3 94 294-401 131-225 (342)
175 KOG1514 Origin recognition com 97.3 0.008 1.7E-07 68.8 16.7 207 179-405 397-625 (767)
176 PF12799 LRR_4: Leucine Rich r 97.3 0.00029 6.4E-09 51.1 3.7 38 649-687 1-38 (44)
177 PRK12377 putative replication 97.3 0.00074 1.6E-08 70.1 8.0 102 216-334 101-205 (248)
178 TIGR00763 lon ATP-dependent pr 97.3 0.0074 1.6E-07 74.3 18.1 165 179-367 321-505 (775)
179 PRK08699 DNA polymerase III su 97.3 0.0011 2.3E-08 72.2 9.2 150 215-366 20-184 (325)
180 PTZ00454 26S protease regulato 97.2 0.0023 5E-08 71.5 12.1 187 179-395 146-351 (398)
181 PRK08181 transposase; Validate 97.2 0.00079 1.7E-08 70.8 7.9 100 218-335 108-209 (269)
182 TIGR03689 pup_AAA proteasome A 97.2 0.0026 5.6E-08 72.7 12.0 174 179-368 183-379 (512)
183 TIGR02640 gas_vesic_GvpN gas v 97.2 0.01 2.3E-07 62.9 15.5 108 218-335 23-161 (262)
184 TIGR02639 ClpA ATP-dependent C 97.1 0.0052 1.1E-07 75.3 14.7 125 179-322 455-580 (731)
185 PRK10865 protein disaggregatio 97.1 0.0055 1.2E-07 75.8 14.9 140 179-334 569-720 (857)
186 PF01695 IstB_IS21: IstB-like 97.1 0.00033 7.2E-09 69.1 3.4 100 217-335 48-150 (178)
187 CHL00176 ftsH cell division pr 97.1 0.0065 1.4E-07 72.0 14.5 184 179-393 184-386 (638)
188 PRK06921 hypothetical protein; 97.1 0.0026 5.7E-08 67.2 9.9 99 216-334 117-224 (266)
189 COG0542 clpA ATP-binding subun 97.1 0.0021 4.7E-08 75.8 9.9 128 179-322 492-620 (786)
190 PRK06526 transposase; Provisio 97.1 0.0013 2.7E-08 69.0 7.2 100 217-335 99-201 (254)
191 PF04665 Pox_A32: Poxvirus A32 97.1 0.002 4.4E-08 65.8 8.4 38 215-254 12-49 (241)
192 KOG3665 ZYG-1-like serine/thre 97.0 0.00035 7.6E-09 83.3 3.3 127 552-683 123-260 (699)
193 COG1373 Predicted ATPase (AAA+ 97.0 0.0067 1.5E-07 68.2 13.3 120 218-363 39-163 (398)
194 KOG2982 Uncharacterized conser 97.0 6E-05 1.3E-09 76.4 -2.8 58 625-684 45-108 (418)
195 PRK07952 DNA replication prote 97.0 0.0035 7.5E-08 65.0 9.8 103 216-334 99-204 (244)
196 PRK12608 transcription termina 97.0 0.0036 7.9E-08 67.9 10.3 101 186-304 119-229 (380)
197 TIGR03346 chaperone_ClpB ATP-d 97.0 0.0039 8.5E-08 77.5 12.1 138 179-334 566-717 (852)
198 PRK10787 DNA-binding ATP-depen 97.0 0.0076 1.7E-07 73.5 14.2 165 179-367 323-506 (784)
199 TIGR03345 VI_ClpV1 type VI sec 97.0 0.0028 6.2E-08 78.1 10.5 138 179-334 567-718 (852)
200 PRK08118 topology modulation p 97.0 0.0012 2.6E-08 64.6 5.9 34 218-251 3-37 (167)
201 PRK08939 primosomal protein Dn 97.0 0.0032 7E-08 67.9 9.6 102 215-334 155-260 (306)
202 PRK04296 thymidine kinase; Pro 97.0 0.0021 4.6E-08 64.5 7.6 114 217-337 3-118 (190)
203 COG2812 DnaX DNA polymerase II 97.0 0.0031 6.7E-08 71.6 9.7 187 179-396 17-215 (515)
204 COG0470 HolB ATPase involved i 97.0 0.0054 1.2E-07 67.9 11.7 123 179-334 2-148 (325)
205 PRK09183 transposase/IS protei 97.0 0.0036 7.8E-08 66.0 9.6 101 217-335 103-206 (259)
206 COG0466 Lon ATP-dependent Lon 97.0 0.018 3.9E-07 66.4 15.5 163 179-368 324-509 (782)
207 PRK13531 regulatory ATPase Rav 97.0 0.004 8.6E-08 69.9 10.2 153 179-366 21-193 (498)
208 PRK04132 replication factor C 97.0 0.014 3.1E-07 70.6 15.6 156 224-401 574-731 (846)
209 KOG3665 ZYG-1-like serine/thre 96.9 0.00036 7.7E-09 83.3 2.1 131 576-710 121-261 (699)
210 TIGR01241 FtsH_fam ATP-depende 96.9 0.012 2.6E-07 68.8 14.5 186 179-395 56-260 (495)
211 KOG2004 Mitochondrial ATP-depe 96.8 0.0085 1.9E-07 68.5 11.6 102 179-305 412-515 (906)
212 PHA00729 NTP-binding motif con 96.8 0.0051 1.1E-07 62.1 8.8 25 214-238 15-39 (226)
213 TIGR02237 recomb_radB DNA repa 96.8 0.0048 1E-07 63.2 8.9 49 214-265 10-58 (209)
214 PF07693 KAP_NTPase: KAP famil 96.8 0.067 1.5E-06 59.1 18.6 42 184-239 2-43 (325)
215 KOG0741 AAA+-type ATPase [Post 96.8 0.016 3.5E-07 63.9 12.8 151 214-391 536-704 (744)
216 PRK09361 radB DNA repair and r 96.7 0.0062 1.3E-07 63.2 9.2 47 214-263 21-67 (225)
217 TIGR02902 spore_lonB ATP-depen 96.7 0.0045 9.8E-08 72.4 8.9 172 179-368 66-277 (531)
218 COG5238 RNA1 Ran GTPase-activa 96.7 0.00039 8.5E-09 69.7 0.0 121 785-929 181-317 (388)
219 CHL00095 clpC Clp protease ATP 96.7 0.0075 1.6E-07 74.8 11.1 140 179-334 510-661 (821)
220 COG1484 DnaC DNA replication p 96.7 0.0019 4E-08 67.8 4.9 82 215-313 104-185 (254)
221 PF10443 RNA12: RNA12 protein; 96.7 0.12 2.7E-06 56.8 18.8 215 183-420 1-298 (431)
222 PRK05541 adenylylsulfate kinas 96.7 0.0072 1.6E-07 60.0 8.9 38 214-253 5-42 (176)
223 PRK07261 topology modulation p 96.7 0.0042 9E-08 61.1 6.9 65 218-305 2-67 (171)
224 PRK06835 DNA replication prote 96.7 0.0038 8.3E-08 67.8 7.1 102 217-334 184-288 (329)
225 PF02562 PhoH: PhoH-like prote 96.6 0.0056 1.2E-07 61.2 7.6 132 182-336 4-157 (205)
226 TIGR01243 CDC48 AAA family ATP 96.6 0.017 3.8E-07 70.9 13.5 188 179-396 179-382 (733)
227 TIGR01243 CDC48 AAA family ATP 96.6 0.023 4.9E-07 69.9 14.4 187 179-395 454-657 (733)
228 cd01393 recA_like RecA is a b 96.6 0.012 2.5E-07 61.2 10.1 89 214-305 17-124 (226)
229 KOG2228 Origin recognition com 96.6 0.029 6.2E-07 58.8 12.3 171 179-367 25-219 (408)
230 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.012 2.6E-07 61.6 10.0 56 214-270 17-76 (235)
231 KOG2982 Uncharacterized conser 96.6 0.00098 2.1E-08 67.9 1.6 85 883-974 197-283 (418)
232 KOG1859 Leucine-rich repeat pr 96.6 0.00013 2.8E-09 82.6 -5.1 22 618-640 102-123 (1096)
233 PF07728 AAA_5: AAA domain (dy 96.5 0.00081 1.8E-08 63.8 0.7 89 219-320 2-90 (139)
234 cd01394 radB RadB. The archaea 96.5 0.011 2.3E-07 61.1 9.0 44 214-259 17-60 (218)
235 PRK11034 clpA ATP-dependent Cl 96.5 0.012 2.6E-07 71.2 10.5 125 179-322 459-584 (758)
236 cd01120 RecA-like_NTPases RecA 96.4 0.013 2.9E-07 57.1 9.0 40 218-259 1-40 (165)
237 PF14532 Sigma54_activ_2: Sigm 96.4 0.0043 9.2E-08 58.7 5.2 108 181-335 1-110 (138)
238 KOG1969 DNA replication checkp 96.4 0.0097 2.1E-07 68.3 8.6 90 213-320 323-412 (877)
239 KOG1859 Leucine-rich repeat pr 96.4 0.00015 3.3E-09 82.0 -5.7 84 619-710 181-265 (1096)
240 COG1222 RPT1 ATP-dependent 26S 96.4 0.023 5E-07 60.1 10.3 196 179-405 152-371 (406)
241 PRK11889 flhF flagellar biosyn 96.4 0.031 6.6E-07 61.1 11.6 104 215-320 240-347 (436)
242 smart00763 AAA_PrkA PrkA AAA d 96.4 0.0035 7.6E-08 67.8 4.6 50 179-239 52-101 (361)
243 COG0542 clpA ATP-binding subun 96.4 0.013 2.8E-07 69.5 9.4 154 179-365 171-344 (786)
244 PF00158 Sigma54_activat: Sigm 96.3 0.011 2.3E-07 57.8 7.3 131 180-335 1-144 (168)
245 PRK06696 uridine kinase; Valid 96.3 0.0044 9.5E-08 64.1 4.7 43 182-238 2-44 (223)
246 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.022 4.7E-07 54.5 8.6 117 217-336 3-139 (159)
247 PF13207 AAA_17: AAA domain; P 96.2 0.0028 6E-08 58.5 2.6 21 218-238 1-21 (121)
248 cd01133 F1-ATPase_beta F1 ATP 96.2 0.027 5.8E-07 58.9 9.9 88 215-304 68-172 (274)
249 TIGR02012 tigrfam_recA protein 96.2 0.022 4.9E-07 61.2 9.3 85 214-305 53-143 (321)
250 KOG4579 Leucine-rich repeat (L 96.1 0.0014 3.1E-08 59.0 0.1 54 626-681 78-131 (177)
251 TIGR02974 phageshock_pspF psp 96.1 0.033 7.2E-07 61.0 10.7 130 180-334 1-143 (329)
252 cd00983 recA RecA is a bacter 96.1 0.026 5.5E-07 60.8 9.5 85 214-305 53-143 (325)
253 PRK06067 flagellar accessory p 96.1 0.039 8.3E-07 57.6 10.7 87 214-305 23-130 (234)
254 PRK12724 flagellar biosynthesi 96.1 0.031 6.7E-07 61.9 10.2 25 215-239 222-246 (432)
255 PRK11608 pspF phage shock prot 96.1 0.042 9.2E-07 60.2 11.2 133 179-334 7-150 (326)
256 PRK09354 recA recombinase A; P 96.0 0.029 6.3E-07 60.9 9.5 85 214-305 58-148 (349)
257 cd00544 CobU Adenosylcobinamid 96.0 0.026 5.6E-07 55.1 8.4 79 219-304 2-82 (169)
258 KOG0734 AAA+-type ATPase conta 96.0 0.019 4.1E-07 63.5 7.9 54 179-240 305-361 (752)
259 PRK12723 flagellar biosynthesi 96.0 0.081 1.7E-06 58.8 13.0 104 214-320 172-281 (388)
260 KOG0733 Nuclear AAA ATPase (VC 96.0 0.016 3.4E-07 65.3 7.3 102 179-305 191-292 (802)
261 PF13604 AAA_30: AAA domain; P 96.0 0.029 6.2E-07 56.6 8.8 105 217-336 19-132 (196)
262 TIGR03499 FlhF flagellar biosy 96.0 0.025 5.5E-07 60.5 8.8 88 215-304 193-281 (282)
263 PF08423 Rad51: Rad51; InterP 96.0 0.028 6.2E-07 59.1 8.9 57 215-272 37-97 (256)
264 PRK05800 cobU adenosylcobinami 96.0 0.014 3E-07 57.2 6.0 80 218-304 3-85 (170)
265 CHL00195 ycf46 Ycf46; Provisio 96.0 0.055 1.2E-06 62.2 11.8 158 214-395 257-429 (489)
266 PF05659 RPW8: Arabidopsis bro 96.0 0.11 2.5E-06 48.9 11.8 84 1-84 2-86 (147)
267 KOG4579 Leucine-rich repeat (L 96.0 0.00088 1.9E-08 60.3 -2.1 93 572-669 48-142 (177)
268 PF00448 SRP54: SRP54-type pro 95.9 0.025 5.3E-07 56.8 7.7 88 216-305 1-93 (196)
269 PRK14974 cell division protein 95.9 0.065 1.4E-06 58.4 11.5 101 214-318 138-247 (336)
270 KOG1644 U2-associated snRNP A' 95.9 0.0099 2.1E-07 57.6 4.5 107 814-949 41-151 (233)
271 COG1618 Predicted nucleotide k 95.9 0.0074 1.6E-07 56.3 3.5 31 216-248 5-36 (179)
272 PRK00771 signal recognition pa 95.9 0.09 2E-06 59.4 12.8 89 214-305 93-185 (437)
273 PHA02244 ATPase-like protein 95.9 0.056 1.2E-06 58.7 10.6 21 218-238 121-141 (383)
274 COG2884 FtsE Predicted ATPase 95.9 0.11 2.4E-06 50.1 11.3 59 285-343 145-205 (223)
275 PRK07132 DNA polymerase III su 95.9 0.27 6E-06 52.7 15.8 154 215-400 17-184 (299)
276 TIGR01817 nifA Nif-specific re 95.9 0.04 8.7E-07 65.2 10.5 133 179-334 197-340 (534)
277 cd01131 PilT Pilus retraction 95.8 0.017 3.6E-07 58.4 6.3 111 217-339 2-113 (198)
278 cd03214 ABC_Iron-Siderophores_ 95.8 0.093 2E-06 52.2 11.6 120 216-339 25-162 (180)
279 PTZ00494 tuzin-like protein; P 95.8 1.1 2.3E-05 49.4 19.8 165 179-366 372-543 (664)
280 PRK14722 flhF flagellar biosyn 95.8 0.067 1.5E-06 58.9 11.2 90 215-306 136-226 (374)
281 cd01122 GP4d_helicase GP4d_hel 95.8 0.09 2E-06 56.3 12.2 56 215-273 29-84 (271)
282 PRK08233 hypothetical protein; 95.8 0.028 6E-07 56.1 7.6 23 216-238 3-25 (182)
283 PF07724 AAA_2: AAA domain (Cd 95.7 0.007 1.5E-07 59.3 2.9 90 216-320 3-104 (171)
284 PRK07667 uridine kinase; Provi 95.7 0.02 4.4E-07 57.6 6.3 25 214-238 15-39 (193)
285 KOG0733 Nuclear AAA ATPase (VC 95.7 0.066 1.4E-06 60.5 10.5 157 216-394 545-717 (802)
286 cd03115 SRP The signal recogni 95.7 0.082 1.8E-06 52.2 10.5 86 218-305 2-92 (173)
287 cd03247 ABCC_cytochrome_bd The 95.7 0.073 1.6E-06 52.8 10.2 117 217-339 29-161 (178)
288 TIGR02238 recomb_DMC1 meiotic 95.7 0.04 8.7E-07 59.6 8.7 59 214-273 94-156 (313)
289 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.7 0.094 2E-06 49.9 10.3 105 216-340 26-132 (144)
290 PRK13695 putative NTPase; Prov 95.6 0.015 3.2E-07 57.5 5.0 22 218-239 2-23 (174)
291 PRK09270 nucleoside triphospha 95.6 0.059 1.3E-06 55.9 9.6 25 214-238 31-55 (229)
292 COG4608 AppF ABC-type oligopep 95.6 0.088 1.9E-06 54.3 10.4 125 216-343 39-178 (268)
293 PLN00020 ribulose bisphosphate 95.6 0.024 5.2E-07 61.0 6.5 26 214-239 146-171 (413)
294 KOG0730 AAA+-type ATPase [Post 95.6 0.066 1.4E-06 61.3 10.2 168 179-370 435-618 (693)
295 TIGR02236 recomb_radA DNA repa 95.6 0.059 1.3E-06 58.9 9.8 58 214-272 93-154 (310)
296 PLN03187 meiotic recombination 95.6 0.077 1.7E-06 57.9 10.5 59 214-273 124-186 (344)
297 COG0572 Udk Uridine kinase [Nu 95.6 0.022 4.7E-07 56.9 5.7 78 214-296 6-85 (218)
298 cd03238 ABC_UvrA The excision 95.5 0.09 2E-06 51.7 10.0 114 216-339 21-153 (176)
299 PRK15429 formate hydrogenlyase 95.5 0.058 1.3E-06 65.9 10.5 133 179-335 377-521 (686)
300 PF00485 PRK: Phosphoribulokin 95.5 0.04 8.7E-07 55.5 7.7 79 218-299 1-87 (194)
301 TIGR03877 thermo_KaiC_1 KaiC d 95.5 0.093 2E-06 54.8 10.7 50 214-267 19-68 (237)
302 COG1223 Predicted ATPase (AAA+ 95.5 0.068 1.5E-06 53.8 8.8 178 179-394 122-318 (368)
303 cd03223 ABCD_peroxisomal_ALDP 95.5 0.13 2.9E-06 50.2 11.0 116 216-339 27-152 (166)
304 PRK12726 flagellar biosynthesi 95.5 0.15 3.2E-06 55.7 12.0 91 214-306 204-296 (407)
305 PLN03186 DNA repair protein RA 95.5 0.071 1.5E-06 58.3 9.8 59 214-273 121-183 (342)
306 COG0468 RecA RecA/RadA recombi 95.5 0.072 1.6E-06 56.0 9.4 89 214-304 58-150 (279)
307 PRK15455 PrkA family serine pr 95.5 0.014 3E-07 66.5 4.3 49 179-238 77-125 (644)
308 PRK10867 signal recognition pa 95.4 0.075 1.6E-06 59.9 10.0 25 214-238 98-122 (433)
309 COG2607 Predicted ATPase (AAA+ 95.4 0.33 7.1E-06 48.8 13.0 105 179-321 61-166 (287)
310 cd02025 PanK Pantothenate kina 95.4 0.055 1.2E-06 55.6 8.2 73 218-293 1-76 (220)
311 COG1875 NYN ribonuclease and A 95.4 0.069 1.5E-06 56.7 8.8 134 180-335 226-388 (436)
312 KOG1644 U2-associated snRNP A' 95.4 0.022 4.7E-07 55.3 4.6 93 781-895 56-150 (233)
313 PRK04301 radA DNA repair and r 95.3 0.092 2E-06 57.5 10.3 58 214-272 100-161 (317)
314 PRK05439 pantothenate kinase; 95.3 0.093 2E-06 56.3 9.8 81 213-296 83-166 (311)
315 cd03281 ABC_MSH5_euk MutS5 hom 95.3 0.048 1E-06 55.7 7.4 122 216-342 29-161 (213)
316 cd03216 ABC_Carb_Monos_I This 95.3 0.066 1.4E-06 52.2 8.0 116 217-340 27-147 (163)
317 COG1419 FlhF Flagellar GTP-bin 95.3 0.055 1.2E-06 59.0 7.9 103 215-320 202-308 (407)
318 KOG1051 Chaperone HSP104 and r 95.3 0.12 2.6E-06 62.5 11.4 124 179-322 563-687 (898)
319 cd01124 KaiC KaiC is a circadi 95.3 0.11 2.4E-06 52.0 9.9 45 218-266 1-45 (187)
320 PTZ00301 uridine kinase; Provi 95.2 0.033 7.1E-07 56.5 5.8 23 216-238 3-25 (210)
321 TIGR02239 recomb_RAD51 DNA rep 95.2 0.093 2E-06 57.0 9.6 58 214-272 94-155 (316)
322 PRK15453 phosphoribulokinase; 95.2 0.2 4.3E-06 52.5 11.4 78 214-293 3-88 (290)
323 TIGR00959 ffh signal recogniti 95.2 0.18 3.8E-06 57.0 12.0 91 214-305 97-192 (428)
324 KOG1947 Leucine rich repeat pr 95.2 0.0038 8.3E-08 73.3 -1.3 44 913-956 400-445 (482)
325 TIGR00708 cobA cob(I)alamin ad 95.2 0.11 2.4E-06 50.4 8.9 117 217-336 6-141 (173)
326 PRK08533 flagellar accessory p 95.2 0.15 3.3E-06 52.8 10.7 49 215-267 23-71 (230)
327 PF01583 APS_kinase: Adenylyls 95.2 0.026 5.6E-07 53.7 4.5 36 216-253 2-37 (156)
328 PRK10733 hflB ATP-dependent me 95.2 0.15 3.1E-06 61.5 12.0 166 179-369 153-337 (644)
329 cd03228 ABCC_MRP_Like The MRP 95.1 0.11 2.4E-06 51.1 9.3 118 216-340 28-160 (171)
330 TIGR00064 ftsY signal recognit 95.1 0.1 2.2E-06 55.4 9.5 90 214-306 70-165 (272)
331 COG1136 SalX ABC-type antimicr 95.1 0.23 4.9E-06 50.4 11.4 56 287-342 152-210 (226)
332 PRK05703 flhF flagellar biosyn 95.1 0.1 2.3E-06 59.1 10.1 103 216-320 221-326 (424)
333 KOG2035 Replication factor C, 95.1 0.2 4.3E-06 51.2 10.7 209 179-424 14-261 (351)
334 cd03222 ABC_RNaseL_inhibitor T 95.0 0.18 3.9E-06 49.7 10.3 102 217-340 26-137 (177)
335 PTZ00035 Rad51 protein; Provis 95.0 0.15 3.4E-06 55.8 10.8 58 214-272 116-177 (337)
336 KOG2123 Uncharacterized conser 95.0 0.0012 2.5E-08 66.7 -5.2 34 813-847 39-72 (388)
337 KOG0735 AAA+-type ATPase [Post 95.0 0.028 6E-07 64.4 4.9 73 215-305 430-504 (952)
338 COG0714 MoxR-like ATPases [Gen 95.0 0.049 1.1E-06 60.1 6.8 112 179-321 25-138 (329)
339 cd03230 ABC_DR_subfamily_A Thi 95.0 0.11 2.4E-06 51.3 8.7 119 216-340 26-160 (173)
340 PF13238 AAA_18: AAA domain; P 94.9 0.015 3.3E-07 54.1 2.4 21 219-239 1-21 (129)
341 PF08433 KTI12: Chromatin asso 94.9 0.04 8.8E-07 58.2 5.7 23 217-239 2-24 (270)
342 cd01125 repA Hexameric Replica 94.9 0.17 3.7E-06 52.9 10.5 21 218-238 3-23 (239)
343 PF07726 AAA_3: ATPase family 94.9 0.014 3.1E-07 52.9 1.9 28 219-248 2-29 (131)
344 PRK12727 flagellar biosynthesi 94.9 0.079 1.7E-06 60.3 8.2 90 215-306 349-439 (559)
345 COG1121 ZnuC ABC-type Mn/Zn tr 94.9 0.076 1.7E-06 54.6 7.4 122 217-340 31-204 (254)
346 KOG0728 26S proteasome regulat 94.8 0.71 1.5E-05 46.3 13.5 162 178-367 146-331 (404)
347 PRK07276 DNA polymerase III su 94.8 0.82 1.8E-05 48.7 15.1 71 293-365 102-173 (290)
348 cd02019 NK Nucleoside/nucleoti 94.8 0.019 4E-07 46.7 2.2 21 218-238 1-21 (69)
349 PRK00889 adenylylsulfate kinas 94.8 0.14 3E-06 50.6 8.9 25 215-239 3-27 (175)
350 COG4088 Predicted nucleotide k 94.8 0.26 5.7E-06 48.1 10.1 22 217-238 2-23 (261)
351 TIGR00554 panK_bact pantothena 94.8 0.087 1.9E-06 56.1 7.7 80 214-295 60-141 (290)
352 cd01121 Sms Sms (bacterial rad 94.8 0.18 3.9E-06 55.9 10.5 82 215-304 81-167 (372)
353 PRK05022 anaerobic nitric oxid 94.8 0.12 2.5E-06 60.7 9.6 131 179-335 188-332 (509)
354 COG0464 SpoVK ATPases of the A 94.7 0.23 5.1E-06 58.2 12.1 136 214-369 274-425 (494)
355 PRK06547 hypothetical protein; 94.7 0.039 8.4E-07 54.1 4.6 25 214-238 13-37 (172)
356 PF00560 LRR_1: Leucine Rich R 94.7 0.015 3.3E-07 35.0 1.1 21 626-647 1-21 (22)
357 KOG0744 AAA+-type ATPase [Post 94.7 0.082 1.8E-06 55.1 6.9 79 217-305 178-260 (423)
358 cd03246 ABCC_Protease_Secretio 94.7 0.14 3.1E-06 50.4 8.7 120 216-339 28-160 (173)
359 TIGR01650 PD_CobS cobaltochela 94.7 1.2 2.6E-05 48.0 16.1 60 180-263 47-106 (327)
360 cd03282 ABC_MSH4_euk MutS4 hom 94.7 0.091 2E-06 53.2 7.2 121 216-343 29-159 (204)
361 PRK04328 hypothetical protein; 94.7 0.14 2.9E-06 53.9 8.9 41 214-256 21-61 (249)
362 COG0563 Adk Adenylate kinase a 94.6 0.045 9.8E-07 53.9 4.8 22 218-239 2-23 (178)
363 PF13671 AAA_33: AAA domain; P 94.6 0.024 5.2E-07 53.9 2.9 21 218-238 1-21 (143)
364 PRK05480 uridine/cytidine kina 94.6 0.029 6.2E-07 57.4 3.6 25 214-238 4-28 (209)
365 TIGR02858 spore_III_AA stage I 94.6 0.19 4E-06 53.2 9.6 117 215-340 110-234 (270)
366 cd03229 ABC_Class3 This class 94.6 0.13 2.9E-06 51.0 8.2 121 216-339 26-165 (178)
367 PRK15424 propionate catabolism 94.6 0.48 1E-05 55.3 13.7 46 179-239 220-265 (538)
368 PF00006 ATP-synt_ab: ATP synt 94.6 0.065 1.4E-06 54.4 5.9 85 216-304 15-114 (215)
369 KOG0739 AAA+-type ATPase [Post 94.5 0.94 2E-05 46.8 13.9 99 179-305 134-235 (439)
370 KOG0924 mRNA splicing factor A 94.5 0.22 4.8E-06 56.8 10.3 115 217-337 372-512 (1042)
371 PRK06731 flhF flagellar biosyn 94.5 0.34 7.3E-06 51.1 11.3 104 215-320 74-181 (270)
372 KOG2739 Leucine-rich acidic nu 94.5 0.01 2.2E-07 60.1 0.0 58 622-681 62-124 (260)
373 PRK06002 fliI flagellum-specif 94.5 0.17 3.7E-06 56.8 9.5 87 215-304 164-263 (450)
374 TIGR02329 propionate_PrpR prop 94.5 0.23 4.9E-06 57.9 10.9 131 179-334 213-357 (526)
375 PRK06762 hypothetical protein; 94.5 0.028 6E-07 55.1 3.0 22 217-238 3-24 (166)
376 COG4618 ArpD ABC-type protease 94.5 0.16 3.5E-06 56.5 8.9 48 22-69 178-228 (580)
377 cd02029 PRK_like Phosphoribulo 94.5 0.2 4.4E-06 51.9 9.2 76 218-295 1-84 (277)
378 KOG0731 AAA+-type ATPase conta 94.4 0.44 9.5E-06 56.6 13.0 186 179-397 312-520 (774)
379 TIGR03881 KaiC_arch_4 KaiC dom 94.4 0.29 6.3E-06 50.8 10.7 41 214-256 18-58 (229)
380 COG4240 Predicted kinase [Gene 94.4 0.14 3.1E-06 50.6 7.5 84 213-297 47-135 (300)
381 cd02028 UMPK_like Uridine mono 94.4 0.074 1.6E-06 52.7 5.9 21 218-238 1-21 (179)
382 cd01135 V_A-ATPase_B V/A-type 94.4 0.22 4.8E-06 52.1 9.4 90 215-304 68-175 (276)
383 PRK05917 DNA polymerase III su 94.4 0.93 2E-05 48.1 14.2 100 215-335 18-135 (290)
384 COG1102 Cmk Cytidylate kinase 94.4 0.079 1.7E-06 49.7 5.4 44 218-274 2-45 (179)
385 TIGR00235 udk uridine kinase. 94.3 0.033 7.1E-07 56.9 3.3 25 214-238 4-28 (207)
386 PF12775 AAA_7: P-loop contain 94.3 0.027 5.9E-07 59.7 2.8 22 217-238 34-55 (272)
387 KOG0729 26S proteasome regulat 94.3 0.032 6.9E-07 56.0 2.9 62 179-246 178-239 (435)
388 TIGR03878 thermo_KaiC_2 KaiC d 94.3 0.21 4.6E-06 52.8 9.4 41 214-256 34-74 (259)
389 KOG2739 Leucine-rich acidic nu 94.2 0.032 6.9E-07 56.6 2.7 84 623-709 41-126 (260)
390 PRK10463 hydrogenase nickel in 94.1 0.18 3.9E-06 53.3 8.2 26 213-238 101-126 (290)
391 KOG0743 AAA+-type ATPase [Post 94.1 1.2 2.6E-05 49.2 14.7 153 217-406 236-414 (457)
392 COG0467 RAD55 RecA-superfamily 94.1 0.13 2.8E-06 54.6 7.5 51 214-268 21-71 (260)
393 cd02027 APSK Adenosine 5'-phos 94.1 0.11 2.4E-06 49.7 6.3 21 218-238 1-21 (149)
394 COG1703 ArgK Putative periplas 94.1 0.066 1.4E-06 55.5 4.8 52 214-265 49-100 (323)
395 TIGR01360 aden_kin_iso1 adenyl 94.1 0.039 8.5E-07 55.3 3.3 24 215-238 2-25 (188)
396 PRK14721 flhF flagellar biosyn 94.1 0.23 5.1E-06 55.6 9.5 89 215-305 190-279 (420)
397 COG2842 Uncharacterized ATPase 94.1 0.31 6.8E-06 50.8 9.7 98 217-322 95-192 (297)
398 TIGR00150 HI0065_YjeE ATPase, 94.1 0.066 1.4E-06 49.5 4.3 24 216-239 22-45 (133)
399 PRK03839 putative kinase; Prov 94.1 0.034 7.4E-07 55.3 2.7 21 218-238 2-22 (180)
400 COG5238 RNA1 Ran GTPase-activa 94.0 0.036 7.8E-07 56.1 2.7 234 575-848 28-282 (388)
401 TIGR02655 circ_KaiC circadian 94.0 0.31 6.6E-06 56.8 10.8 49 214-266 261-309 (484)
402 KOG0736 Peroxisome assembly fa 94.0 0.25 5.3E-06 57.7 9.5 103 179-306 673-775 (953)
403 PRK14723 flhF flagellar biosyn 94.0 0.23 5E-06 59.5 9.8 88 216-305 185-273 (767)
404 TIGR01069 mutS2 MutS2 family p 94.0 0.051 1.1E-06 66.3 4.4 176 215-407 321-507 (771)
405 PRK05973 replicative DNA helic 94.0 0.24 5.3E-06 51.0 8.7 49 215-267 63-111 (237)
406 PF03308 ArgK: ArgK protein; 94.0 0.084 1.8E-06 54.1 5.2 26 214-239 27-52 (266)
407 COG1126 GlnQ ABC-type polar am 93.9 0.5 1.1E-05 46.9 10.2 124 216-342 28-203 (240)
408 PRK04040 adenylate kinase; Pro 93.9 0.04 8.7E-07 55.0 2.9 22 217-238 3-24 (188)
409 PRK12678 transcription termina 93.9 0.065 1.4E-06 61.0 4.7 88 215-304 415-512 (672)
410 PRK10875 recD exonuclease V su 93.9 0.17 3.7E-06 59.9 8.5 115 217-336 168-303 (615)
411 PF06745 KaiC: KaiC; InterPro 93.9 0.14 3.1E-06 53.0 7.2 43 214-257 17-59 (226)
412 PTZ00185 ATPase alpha subunit; 93.9 0.34 7.3E-06 54.8 10.2 92 214-305 187-299 (574)
413 cd03215 ABC_Carb_Monos_II This 93.9 0.26 5.7E-06 49.0 8.8 24 216-239 26-49 (182)
414 PRK10820 DNA-binding transcrip 93.9 0.16 3.5E-06 59.6 8.3 132 179-335 205-349 (520)
415 TIGR00382 clpX endopeptidase C 93.9 0.48 1E-05 53.1 11.5 60 179-238 78-138 (413)
416 TIGR03574 selen_PSTK L-seryl-t 93.9 0.24 5.3E-06 52.1 8.9 21 218-238 1-21 (249)
417 COG1120 FepC ABC-type cobalami 93.9 0.32 6.9E-06 50.4 9.3 129 215-343 27-207 (258)
418 TIGR00390 hslU ATP-dependent p 93.9 0.13 2.9E-06 56.8 6.9 88 179-271 13-104 (441)
419 PF00154 RecA: recA bacterial 93.9 0.095 2.1E-06 56.3 5.7 84 214-304 51-140 (322)
420 PRK00625 shikimate kinase; Pro 93.9 0.038 8.2E-07 54.2 2.5 21 218-238 2-22 (173)
421 PRK13540 cytochrome c biogenes 93.9 0.23 4.9E-06 50.4 8.3 55 288-342 138-194 (200)
422 TIGR03498 FliI_clade3 flagella 93.9 0.22 4.7E-06 55.9 8.7 87 215-305 139-240 (418)
423 PRK12597 F0F1 ATP synthase sub 93.8 0.22 4.7E-06 56.4 8.8 89 215-304 142-246 (461)
424 KOG3347 Predicted nucleotide k 93.8 0.21 4.6E-06 46.0 6.9 70 216-295 7-76 (176)
425 COG0396 sufC Cysteine desulfur 93.8 0.62 1.4E-05 46.7 10.7 57 288-344 155-213 (251)
426 PRK06995 flhF flagellar biosyn 93.8 0.24 5.2E-06 56.5 9.0 88 216-305 256-344 (484)
427 TIGR03575 selen_PSTK_euk L-ser 93.8 0.15 3.3E-06 55.4 7.2 21 219-239 2-22 (340)
428 PF00910 RNA_helicase: RNA hel 93.8 0.032 7E-07 50.0 1.7 21 219-239 1-21 (107)
429 TIGR03522 GldA_ABC_ATP gliding 93.8 0.5 1.1E-05 51.4 11.2 53 288-340 144-197 (301)
430 cd03240 ABC_Rad50 The catalyti 93.7 0.4 8.6E-06 48.7 9.8 53 288-340 132-188 (204)
431 PRK10923 glnG nitrogen regulat 93.7 0.26 5.7E-06 57.5 9.6 134 179-335 139-283 (469)
432 KOG3864 Uncharacterized conser 93.7 0.0091 2E-07 57.9 -2.1 68 882-952 122-190 (221)
433 PTZ00088 adenylate kinase 1; P 93.7 0.06 1.3E-06 55.4 3.7 21 218-238 8-28 (229)
434 cd03217 ABC_FeS_Assembly ABC-t 93.7 0.27 5.9E-06 49.8 8.5 120 216-339 26-168 (200)
435 COG1066 Sms Predicted ATP-depe 93.7 0.15 3.2E-06 55.4 6.6 82 215-305 92-178 (456)
436 PRK05986 cob(I)alamin adenolsy 93.6 0.3 6.4E-06 48.1 8.2 119 216-336 22-159 (191)
437 PRK09280 F0F1 ATP synthase sub 93.6 0.29 6.2E-06 55.3 9.2 89 215-304 143-247 (463)
438 cd00267 ABC_ATPase ABC (ATP-bi 93.6 0.23 5E-06 48.0 7.6 116 217-341 26-146 (157)
439 PRK09519 recA DNA recombinatio 93.6 0.31 6.8E-06 58.6 9.9 85 214-305 58-148 (790)
440 PRK09544 znuC high-affinity zi 93.6 0.4 8.6E-06 50.5 9.8 24 216-239 30-53 (251)
441 TIGR01425 SRP54_euk signal rec 93.6 0.29 6.3E-06 54.9 9.1 25 214-238 98-122 (429)
442 PRK11823 DNA repair protein Ra 93.6 0.32 6.8E-06 55.7 9.7 82 215-304 79-165 (446)
443 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 93.6 0.44 9.6E-06 49.2 10.0 23 217-239 49-71 (224)
444 KOG2170 ATPase of the AAA+ sup 93.6 0.37 8.1E-06 50.0 8.9 115 179-320 83-203 (344)
445 PF00560 LRR_1: Leucine Rich R 93.5 0.033 7.1E-07 33.5 0.8 21 650-671 1-21 (22)
446 cd00984 DnaB_C DnaB helicase C 93.5 0.45 9.7E-06 49.9 10.1 55 215-272 12-66 (242)
447 PRK08972 fliI flagellum-specif 93.5 0.25 5.4E-06 55.3 8.2 86 215-304 161-261 (444)
448 PF13481 AAA_25: AAA domain; P 93.4 0.3 6.5E-06 49.1 8.4 41 217-257 33-81 (193)
449 COG2019 AdkA Archaeal adenylat 93.4 0.068 1.5E-06 50.3 3.1 23 216-238 4-26 (189)
450 PRK00131 aroK shikimate kinase 93.4 0.055 1.2E-06 53.5 2.9 23 216-238 4-26 (175)
451 cd01136 ATPase_flagellum-secre 93.4 0.4 8.7E-06 51.9 9.6 85 216-304 69-168 (326)
452 cd03369 ABCC_NFT1 Domain 2 of 93.4 1.1 2.4E-05 45.6 12.5 23 216-238 34-56 (207)
453 TIGR01818 ntrC nitrogen regula 93.4 0.42 9.2E-06 55.7 10.6 134 179-335 135-279 (463)
454 TIGR00416 sms DNA repair prote 93.3 0.49 1.1E-05 54.2 10.7 41 214-256 92-132 (454)
455 TIGR01447 recD exodeoxyribonuc 93.3 0.21 4.5E-06 59.1 7.9 113 217-334 161-295 (586)
456 KOG4252 GTP-binding protein [S 93.3 0.21 4.5E-06 47.1 6.1 39 215-254 19-57 (246)
457 COG1428 Deoxynucleoside kinase 93.3 0.051 1.1E-06 53.6 2.3 24 216-239 4-27 (216)
458 PRK10416 signal recognition pa 93.3 0.48 1E-05 51.5 10.1 26 214-239 112-137 (318)
459 TIGR01420 pilT_fam pilus retra 93.3 0.18 3.8E-06 55.9 6.9 112 216-338 122-233 (343)
460 COG1936 Predicted nucleotide k 93.3 0.059 1.3E-06 51.2 2.6 20 218-237 2-21 (180)
461 PRK05922 type III secretion sy 93.3 0.47 1E-05 53.3 10.1 86 215-304 156-256 (434)
462 PRK07594 type III secretion sy 93.3 0.34 7.4E-06 54.4 9.0 86 215-304 154-254 (433)
463 TIGR01359 UMP_CMP_kin_fam UMP- 93.3 0.048 1E-06 54.5 2.1 21 218-238 1-21 (183)
464 cd01132 F1_ATPase_alpha F1 ATP 93.2 0.29 6.2E-06 51.3 7.8 86 215-304 68-170 (274)
465 cd02023 UMPK Uridine monophosp 93.2 0.048 1E-06 55.2 2.2 21 218-238 1-21 (198)
466 COG4133 CcmA ABC-type transpor 93.2 1.1 2.4E-05 43.5 10.9 22 217-238 29-50 (209)
467 PHA02774 E1; Provisional 93.2 0.31 6.8E-06 56.0 8.6 39 214-256 432-470 (613)
468 PRK08149 ATP synthase SpaL; Va 93.2 0.42 9.1E-06 53.7 9.5 86 215-304 150-250 (428)
469 cd03244 ABCC_MRP_domain2 Domai 93.2 0.76 1.6E-05 47.4 11.1 23 216-238 30-52 (221)
470 PF06309 Torsin: Torsin; Inte 93.2 0.12 2.7E-06 46.8 4.3 51 179-239 26-76 (127)
471 PRK08927 fliI flagellum-specif 93.2 0.39 8.4E-06 54.0 9.2 87 215-305 157-258 (442)
472 PF03205 MobB: Molybdopterin g 93.1 0.1 2.2E-06 49.2 4.0 39 217-256 1-39 (140)
473 cd02021 GntK Gluconate kinase 93.1 0.055 1.2E-06 52.0 2.3 21 218-238 1-21 (150)
474 TIGR02322 phosphon_PhnN phosph 93.1 0.067 1.4E-06 53.2 2.9 22 217-238 2-23 (179)
475 cd03232 ABC_PDR_domain2 The pl 93.1 0.4 8.6E-06 48.2 8.6 23 216-238 33-55 (192)
476 cd02024 NRK1 Nicotinamide ribo 93.1 0.053 1.1E-06 53.7 2.1 21 218-238 1-21 (187)
477 TIGR03740 galliderm_ABC gallid 93.1 0.44 9.5E-06 49.3 9.1 53 288-340 135-189 (223)
478 PRK13543 cytochrome c biogenes 93.1 1 2.2E-05 46.2 11.7 24 216-239 37-60 (214)
479 cd00227 CPT Chloramphenicol (C 93.1 0.062 1.3E-06 53.2 2.6 22 217-238 3-24 (175)
480 PRK00409 recombination and DNA 93.0 0.09 1.9E-06 64.4 4.4 177 215-408 326-513 (782)
481 cd03243 ABC_MutS_homologs The 93.0 0.14 3.1E-06 51.9 5.2 22 217-238 30-51 (202)
482 PF08298 AAA_PrkA: PrkA AAA do 93.0 0.11 2.4E-06 55.9 4.4 49 179-238 62-110 (358)
483 PF13245 AAA_19: Part of AAA d 93.0 0.15 3.3E-06 42.2 4.3 23 216-238 10-33 (76)
484 PRK10751 molybdopterin-guanine 93.0 0.1 2.2E-06 50.7 3.9 25 214-238 4-28 (173)
485 PRK06793 fliI flagellum-specif 92.9 0.23 4.9E-06 55.8 7.0 89 215-306 155-257 (432)
486 PRK11388 DNA-binding transcrip 92.9 0.34 7.4E-06 58.8 9.2 130 179-334 326-466 (638)
487 cd03213 ABCG_EPDR ABCG transpo 92.9 0.71 1.5E-05 46.5 10.1 24 216-239 35-58 (194)
488 smart00534 MUTSac ATPase domai 92.9 0.13 2.8E-06 51.4 4.6 21 218-238 1-21 (185)
489 PRK09099 type III secretion sy 92.9 0.43 9.3E-06 53.9 9.1 87 215-304 162-262 (441)
490 cd03280 ABC_MutS2 MutS2 homolo 92.8 0.17 3.7E-06 51.2 5.5 21 217-237 29-49 (200)
491 PF03796 DnaB_C: DnaB-like hel 92.8 0.4 8.7E-06 50.9 8.5 56 216-274 19-74 (259)
492 COG0003 ArsA Predicted ATPase 92.8 0.16 3.5E-06 54.8 5.4 49 216-266 2-50 (322)
493 PF12061 DUF3542: Protein of u 92.8 0.21 4.6E-06 51.6 5.8 77 4-84 296-373 (402)
494 PRK13947 shikimate kinase; Pro 92.7 0.069 1.5E-06 52.6 2.4 21 218-238 3-23 (171)
495 PF03969 AFG1_ATPase: AFG1-lik 92.7 0.36 7.8E-06 53.4 8.2 105 214-339 60-171 (362)
496 PLN02348 phosphoribulokinase 92.7 0.39 8.5E-06 52.8 8.3 25 214-238 47-71 (395)
497 PRK06217 hypothetical protein; 92.7 0.07 1.5E-06 53.2 2.4 22 218-239 3-24 (183)
498 PRK03846 adenylylsulfate kinas 92.7 0.1 2.2E-06 52.8 3.6 25 214-238 22-46 (198)
499 KOG2123 Uncharacterized conser 92.7 0.01 2.2E-07 60.2 -3.5 61 622-685 38-100 (388)
500 PF03266 NTPase_1: NTPase; In 92.7 0.07 1.5E-06 52.1 2.3 21 219-239 2-22 (168)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=5.1e-85 Score=777.63 Aligned_cols=821 Identities=26% Similarity=0.386 Sum_probs=595.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHhhhchhhHHHH
Q 001993 3 EAIVSTILEQLALILVEQTAAGVRLIAGAEEEVENLHRRFHLIKAVVEDAEKRQMKETAVRVWLDDLKHASYDMEDVLDE 82 (985)
Q Consensus 3 ~~~~~~~~~kl~~~~~~~~~~e~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~l~~~~yd~ed~ld~ 82 (985)
+++++..++|+.. ++.+++....+.++.+..|++.|..++++++||+.++.....+..|...+++++|++||.++.
T Consensus 2 ~~~~s~~~~~~~~----~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~ 77 (889)
T KOG4658|consen 2 GACVSFGVEKLDQ----LLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWL 77 (889)
T ss_pred CeEEEEehhhHHH----HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777 888899999999999999999999999999999999888899999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCC-C--CCcccccCcccccccCCCCchhhhhhHHHHHHHHHHHHHHHHHhhhhcCccccccC
Q 001993 83 WNTAIRKLQMKRSSGDANVS-Q--PMRTVRPSFIIPSYWFSPGQLVQRHNIATKIKNVDKKLDNIVRDINAYGFIISREQ 159 (985)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~ 159 (985)
|..+....+... . .. + ..+++ |++ .++++.+..+..+.+++..+.+....++.......
T Consensus 78 ~~v~~~~~~~~~---~--l~~~~~~~~~~---------c~~----~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~ 139 (889)
T KOG4658|consen 78 FLVEEIERKAND---L--LSTRSVERQRL---------CLC----GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEV 139 (889)
T ss_pred HHHHHHHHHHhH---H--hhhhHHHHHHH---------hhh----hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceec
Confidence 999887654332 0 00 0 00111 111 45667777777777777777777777664332211
Q ss_pred CC--CCcCCCCCcccccccCCceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHh
Q 001993 160 GS--GKVASRPSTTSFLDESYEIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIF 237 (985)
Q Consensus 160 ~~--~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~ 237 (985)
.. ......+++.+..++. . ||.+..++++.+.|...+ ..+++|+||||+||||||+.++
T Consensus 140 ~~~~~~~~~~~e~~~~~~~~-~-VG~e~~~~kl~~~L~~d~-----------------~~iv~i~GMGGvGKTTL~~qi~ 200 (889)
T KOG4658|consen 140 VGESLDPREKVETRPIQSES-D-VGLETMLEKLWNRLMEDD-----------------VGIVGIYGMGGVGKTTLARQIF 200 (889)
T ss_pred ccccccchhhcccCCCCccc-c-ccHHHHHHHHHHHhccCC-----------------CCEEEEECCCcccHHHHHHHHh
Confidence 11 1112234455555555 5 999999999999998433 3899999999999999999999
Q ss_pred cchh-hhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCC--CHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHH
Q 001993 238 NDNE-VRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAV--ESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQ 314 (985)
Q Consensus 238 ~~~~-~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~ 314 (985)
|+.. ++.+|+.++||.||+.++...++.+|++.++....... ..++++..+.+.|++|||+|||||||+.. .|+.
T Consensus 201 N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~--dw~~ 278 (889)
T KOG4658|consen 201 NKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEV--DWDK 278 (889)
T ss_pred cccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccc--cHHh
Confidence 9977 99999999999999999999999999999987543332 34688999999999999999999999864 5999
Q ss_pred HHhhhcCCCCCcEEEEEcCchhhHHh-hcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCC
Q 001993 315 LLGCLRCGSKESRILVTTRNEKVAIA-IGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKG 393 (985)
Q Consensus 315 l~~~l~~~~~gs~iivTtR~~~v~~~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G 393 (985)
+..++|...+||||++|||+..|+.. ++.. ..++++.|+.+|||+||++.+|.... ..++.+.++|++|+++|+|
T Consensus 279 I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~--~~~~v~~L~~~eaW~LF~~~v~~~~~--~~~~~i~~lak~v~~kC~G 354 (889)
T KOG4658|consen 279 IGVPFPSRENGSKVVLTTRSEEVCGRAMGVD--YPIEVECLTPEEAWDLFQKKVGPNTL--GSHPDIEELAKEVAEKCGG 354 (889)
T ss_pred cCCCCCCccCCeEEEEEeccHhhhhccccCC--ccccccccCccccHHHHHHhhccccc--cccccHHHHHHHHHHHhCC
Confidence 99999998999999999999999998 6665 79999999999999999999998754 3445589999999999999
Q ss_pred ChhHHHHHHhhhhcCCChHHHHHHHHhhhhhh----hccccccchhhhcccCCCCcchhHHHhhhccCCCCcccChhHHH
Q 001993 394 LPLAVKTLGSLLRFKGKIEEWQRVLENELWEL----EELDEGLLGPLLLSYLDLPPPLKKCFSYCAIFPKDSRLEKDKLI 469 (985)
Q Consensus 394 lPLai~~~~~~L~~~~~~~~w~~~~~~~~~~~----~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li 469 (985)
+|||++++|+.|+.+.+..+|+++.+...+.. .+..+.+++++++||+.||+++|.||+|||+||+||.|+++.||
T Consensus 355 LPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li 434 (889)
T KOG4658|consen 355 LPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLI 434 (889)
T ss_pred hHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHH
Confidence 99999999999999999999999998765552 23356799999999999999999999999999999999999999
Q ss_pred HHHhhcCcccccC-ccch-hhHhHHHHHHHhhccccccccCCCCCCeEEEEecchHHHHHHHhhcc-----cccceeccC
Q 001993 470 RLWMAQDYLKVKG-REDM-VVGEGYFENLAMRSLFQDFERSEHDGGKIISCQMHDMVHDFSQFLTK-----TECSALDVN 542 (985)
Q Consensus 470 ~~Wiaeg~i~~~~-~~~~-~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~~mHdlv~d~~~~~~~-----~e~~~~~~~ 542 (985)
.+|+||||+.+.. +..+ +.|+.|+++|+.++|++..... +. ...|+|||+||++|.+++. .+.......
T Consensus 435 ~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~---~~-~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~ 510 (889)
T KOG4658|consen 435 EYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE---GR-KETVKMHDVVREMALWIASDFGKQEENQIVSDG 510 (889)
T ss_pred HHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc---cc-eeEEEeeHHHHHHHHHHhccccccccceEEECC
Confidence 9999999998844 4555 9999999999999999976543 22 6779999999999999998 554433322
Q ss_pred -cc---cccCCCCCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC---CCC
Q 001993 543 -KS---RLQLPSWKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL---PVG 615 (985)
Q Consensus 543 -~~---~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~---~~~ 615 (985)
+. .....+..+|++++.++....+ ..-..+++|++|.+.++.. ........+|..++.||||||+ ...
T Consensus 511 ~~~~~~~~~~~~~~~rr~s~~~~~~~~~----~~~~~~~~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~ 585 (889)
T KOG4658|consen 511 VGLSEIPQVKSWNSVRRMSLMNNKIEHI----AGSSENPKLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLS 585 (889)
T ss_pred cCccccccccchhheeEEEEeccchhhc----cCCCCCCccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCccC
Confidence 11 1122345789999998876322 2234566899999998852 1233456678999999999999 678
Q ss_pred CCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcC
Q 001993 616 QIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGM 695 (985)
Q Consensus 616 ~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i 695 (985)
++|.+|++|.|||||+|+++. +..+|..+.+|+.|.+||+..+..+..+|..+..|.+||+|.+.... ...-...+
T Consensus 586 ~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~---~~~~~~~l 661 (889)
T KOG4658|consen 586 KLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA---LSNDKLLL 661 (889)
T ss_pred cCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc---cccchhhH
Confidence 899999999999999999999 99999999999999999999988777777766779999999987322 11111123
Q ss_pred CCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCc
Q 001993 696 ERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKT 775 (985)
Q Consensus 696 ~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 775 (985)
+.+.+|++|......... . ..+..+..+..|+ ++. +.+.+..+
T Consensus 662 ~el~~Le~L~~ls~~~~s---~-~~~e~l~~~~~L~-~~~---------------------------~~l~~~~~----- 704 (889)
T KOG4658|consen 662 KELENLEHLENLSITISS---V-LLLEDLLGMTRLR-SLL---------------------------QSLSIEGC----- 704 (889)
T ss_pred Hhhhcccchhhheeecch---h-HhHhhhhhhHHHH-HHh---------------------------Hhhhhccc-----
Confidence 333334443333222111 0 0111222111111 000 00000000
Q ss_pred chhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhh-----c-cccccEEeEeccCCCCcCCCCCCCCccceeeccCCC
Q 001993 776 KDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWML-----S-LAKLRVLTLRFCNECECLPPLGKLPCLETLVLEGMS 849 (985)
Q Consensus 776 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~-----~-l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~ 849 (985)
........+..+.+|+.|.+.+|.+.... ..|.. . ++++.++.+.+|.....+.+.-..|+|+.|.+..|.
T Consensus 705 -~~~~~~~~~~~l~~L~~L~i~~~~~~e~~--~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 705 -SKRTLISSLGSLGNLEELSILDCGISEIV--IEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCR 781 (889)
T ss_pred -ccceeecccccccCcceEEEEcCCCchhh--cccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccc
Confidence 01112223344566666666666554321 11211 1 445666666666655555555556777777777776
Q ss_pred CceEeCCcccCCchhhhhhhhhhhcccccccCCCCCcccee-eccccccccccccccccCcccccccccceeecccccCC
Q 001993 850 SVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETL-EFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELK 928 (985)
Q Consensus 850 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L-~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~ 928 (985)
.++.+....-.... ... ....|+++..+ .+.+.+.+.++.. ..-.+++|+.+.+..||++.
T Consensus 782 ~~e~~i~~~k~~~~--------l~~-----~i~~f~~~~~l~~~~~l~~l~~i~~-----~~l~~~~l~~~~ve~~p~l~ 843 (889)
T KOG4658|consen 782 LLEDIIPKLKALLE--------LKE-----LILPFNKLEGLRMLCSLGGLPQLYW-----LPLSFLKLEELIVEECPKLG 843 (889)
T ss_pred ccccCCCHHHHhhh--------ccc-----EEecccccccceeeecCCCCceeEe-----cccCccchhheehhcCcccc
Confidence 55554321100000 000 01345666666 4555555555544 22256678888888888777
Q ss_pred CCCCCCCCCCCcCeEEecCc
Q 001993 929 ALPDYILGSTSLDKLLIYYS 948 (985)
Q Consensus 929 ~lp~~~~~l~~L~~L~i~~c 948 (985)
++| .+.++.|.+|
T Consensus 844 ~~P-------~~~~~~i~~~ 856 (889)
T KOG4658|consen 844 KLP-------LLSTLTIVGC 856 (889)
T ss_pred cCc-------cccccceecc
Confidence 766 3455566665
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6.8e-62 Score=614.37 Aligned_cols=663 Identities=22% Similarity=0.262 Sum_probs=430.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEe---C
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCV---S 255 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---s 255 (985)
++|||+..++++..+|... ..++++|+||||||+||||||+++|+ ++..+|+..+|+.. +
T Consensus 185 ~~vG~~~~l~~l~~lL~l~---------------~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~ 247 (1153)
T PLN03210 185 DFVGIEDHIAKMSSLLHLE---------------SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFIS 247 (1153)
T ss_pred cccchHHHHHHHHHHHccc---------------cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccc
Confidence 7999999999999988633 25689999999999999999999999 78889998887742 1
Q ss_pred CC-----------CC-HHHHHHHHHHHhcCCCCC-CCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCC
Q 001993 256 EP-----------FD-DIRIAKAILESLKGSATN-AVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCG 322 (985)
Q Consensus 256 ~~-----------~~-~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~ 322 (985)
.. +. ...++.+++.++...... ... ...+++.++++|+||||||||+ ...|+.+.....+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~ 321 (1153)
T PLN03210 248 KSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWF 321 (1153)
T ss_pred cchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccC
Confidence 11 01 123455555555432211 111 1456788899999999999976 45788888777777
Q ss_pred CCCcEEEEEcCchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHH
Q 001993 323 SKESRILVTTRNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLG 402 (985)
Q Consensus 323 ~~gs~iivTtR~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 402 (985)
++||+||||||++.++..++.. .+|+++.|++++||+||+++||+.. .+++.+.+++++|+++|+|+||||+++|
T Consensus 322 ~~GsrIIiTTrd~~vl~~~~~~--~~~~v~~l~~~ea~~LF~~~Af~~~---~~~~~~~~l~~~iv~~c~GLPLAl~vlg 396 (1153)
T PLN03210 322 GSGSRIIVITKDKHFLRAHGID--HIYEVCLPSNELALEMFCRSAFKKN---SPPDGFMELASEVALRAGNLPLGLNVLG 396 (1153)
T ss_pred CCCcEEEEEeCcHHHHHhcCCC--eEEEecCCCHHHHHHHHHHHhcCCC---CCcHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 8999999999999998877665 6899999999999999999999764 3456788999999999999999999999
Q ss_pred hhhhcCCChHHHHHHHHhhhhhhhccccccchhhhcccCCCCc-chhHHHhhhccCCCCcccChhHHHHHHhhcCccccc
Q 001993 403 SLLRFKGKIEEWQRVLENELWELEELDEGLLGPLLLSYLDLPP-PLKKCFSYCAIFPKDSRLEKDKLIRLWMAQDYLKVK 481 (985)
Q Consensus 403 ~~L~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~-~~k~cfl~~a~fp~~~~i~~~~Li~~Wiaeg~i~~~ 481 (985)
++|+.+ +..+|..+++..... .+.++.++|++||++|++ ..|.||+++|+||.+..++ .+..|++.+.....
T Consensus 397 s~L~~k-~~~~W~~~l~~L~~~---~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~~ 469 (1153)
T PLN03210 397 SYLRGR-DKEDWMDMLPRLRNG---LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDVN 469 (1153)
T ss_pred HHHcCC-CHHHHHHHHHHHHhC---ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCch
Confidence 999865 689999999875432 235699999999999987 5999999999999987554 47788887755321
Q ss_pred CccchhhHhHHHHHHHhhccccccccCCCCCCeEEEEecchHHHHHHHhhcccccceeccCcccc------------cCC
Q 001993 482 GREDMVVGEGYFENLAMRSLFQDFERSEHDGGKIISCQMHDMVHDFSQFLTKTECSALDVNKSRL------------QLP 549 (985)
Q Consensus 482 ~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~~~mHdlv~d~~~~~~~~e~~~~~~~~~~~------------~~~ 549 (985)
.-++.|++++|++... +. +.|||++|++++.+++++.. ......+. ...
T Consensus 470 ---------~~l~~L~~ksLi~~~~-----~~----~~MHdLl~~~~r~i~~~~~~-~~~~r~~l~~~~di~~vl~~~~g 530 (1153)
T PLN03210 470 ---------IGLKNLVDKSLIHVRE-----DI----VEMHSLLQEMGKEIVRAQSN-EPGEREFLVDAKDICDVLEDNTG 530 (1153)
T ss_pred ---------hChHHHHhcCCEEEcC-----Ce----EEhhhHHHHHHHHHHHhhcC-CCCcceeEeCHHHHHHHHHhCcc
Confidence 2288999999997632 22 78999999999999876531 11111100 112
Q ss_pred CCCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCc---chhhhHHHhhc-----------------------cC
Q 001993 550 SWKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSF---KPRIALSKLFD-----------------------RL 603 (985)
Q Consensus 550 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~---~~~~~~~~~~~-----------------------~l 603 (985)
...++.+++......+.......|.++++|+.|.+..+... .....+|..|. .+
T Consensus 531 ~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~ 610 (1153)
T PLN03210 531 TKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRP 610 (1153)
T ss_pred cceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCc
Confidence 34567777654444322223445667777777776543210 00001111122 23
Q ss_pred CcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecc
Q 001993 604 TCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNS 681 (985)
Q Consensus 604 ~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~ 681 (985)
.+|+.|++. .+..+|..+..+.+|++|+|+++..++.+|. ++.+++|++|+|++|..+..+|..+++|++|++|+++
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 455555555 4455555566666666666666554556654 5666666666666666666666666666666666666
Q ss_pred cccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchh-hhccccCcceeeecccccccCCCCcchhhhccccccc
Q 001993 682 KEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKS-LNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKM 760 (985)
Q Consensus 682 ~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~-L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~ 760 (985)
+|..+..+|.++ ++++|+.|.+.++.... .+.. ..+|+ .|.+.+.. +..++ ....++
T Consensus 690 --~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~------~~p~~~~nL~----~L~L~~n~-i~~lP--------~~~~l~ 747 (1153)
T PLN03210 690 --RCENLEILPTGI-NLKSLYRLNLSGCSRLK------SFPDISTNIS----WLDLDETA-IEEFP--------SNLRLE 747 (1153)
T ss_pred --CCCCcCccCCcC-CCCCCCEEeCCCCCCcc------ccccccCCcC----eeecCCCc-ccccc--------cccccc
Confidence 555566666555 56666666554332111 0100 11222 22221110 11100 011345
Q ss_pred ccccEEEEEcCCCCcc--hhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCCCCCCC
Q 001993 761 KLVDLHLRFDSTTKTK--DHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPPLGKLP 838 (985)
Q Consensus 761 ~L~~L~l~~~~~~~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~ 838 (985)
+|+.|.+..+...... ...........+++|+.|++++|..... +|.+++++++|+.|+|++|..++.+|...+++
T Consensus 748 ~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~ 825 (1153)
T PLN03210 748 NLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLETLPTGINLE 825 (1153)
T ss_pred ccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCeeCCCCCcc
Confidence 5666665432200000 0000000112246899999998864332 28889999999999999998888888766899
Q ss_pred ccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccc
Q 001993 839 CLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRH 918 (985)
Q Consensus 839 ~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~ 918 (985)
+|+.|+|++|+.+..+|.. .++|+.|+|.+ +.++.++. ....+++|+.
T Consensus 826 sL~~L~Ls~c~~L~~~p~~--------------------------~~nL~~L~Ls~-n~i~~iP~-----si~~l~~L~~ 873 (1153)
T PLN03210 826 SLESLDLSGCSRLRTFPDI--------------------------STNISDLNLSR-TGIEEVPW-----WIEKFSNLSF 873 (1153)
T ss_pred ccCEEECCCCCcccccccc--------------------------ccccCEeECCC-CCCccChH-----HHhcCCCCCE
Confidence 9999999999887766542 23455555544 23333332 2334555555
Q ss_pred eeecccccCCCCCCCCCCCCCcCeEEecCchhhh
Q 001993 919 LSICWSPELKALPDYILGSTSLDKLLIYYSRHLN 952 (985)
Q Consensus 919 L~i~~c~~L~~lp~~~~~l~~L~~L~i~~c~~l~ 952 (985)
|++.+|++|+.+|..+..+++|+.+++++|++|+
T Consensus 874 L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 874 LDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred EECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 5555555555555555555555555555555554
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2e-42 Score=375.97 Aligned_cols=279 Identities=38% Similarity=0.650 Sum_probs=226.4
Q ss_pred chhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHH
Q 001993 183 RNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIR 262 (985)
Q Consensus 183 r~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~ 262 (985)
||.++++|.++|.... .+.++|+|+||||+||||||++++++..++.+|+.++|+.++...+...
T Consensus 1 re~~~~~l~~~L~~~~---------------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~ 65 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS---------------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQ 65 (287)
T ss_dssp -HHHHHHHHHHHHTTT---------------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHH
T ss_pred CHHHHHHHHHHhhCCC---------------CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccc
Confidence 7899999999998543 5789999999999999999999999777999999999999999999999
Q ss_pred HHHHHHHHhcCCCC---CCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchhhHH
Q 001993 263 IAKAILESLKGSAT---NAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEKVAI 339 (985)
Q Consensus 263 ~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 339 (985)
++..|+.++..... ...+.++....+.+.|+++++||||||||+. ..|+.+...++....|++||||||+..++.
T Consensus 66 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~ 143 (287)
T PF00931_consen 66 LLEQILRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAG 143 (287)
T ss_dssp HHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGT
T ss_pred ccccccccccccccccccccccccccccchhhhccccceeeeeeeccc--cccccccccccccccccccccccccccccc
Confidence 99999999987643 4567788999999999999999999999864 588888888887778999999999999887
Q ss_pred hhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhhhcCCChHHHHHHHH
Q 001993 340 AIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLLRFKGKIEEWQRVLE 419 (985)
Q Consensus 340 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~~~w~~~~~ 419 (985)
.+... ...+++++|+.+||++||.+.++.... ...+...+.+++|+++|+|+||||+++|++|+.+.+..+|..+++
T Consensus 144 ~~~~~-~~~~~l~~L~~~ea~~L~~~~~~~~~~--~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~ 220 (287)
T PF00931_consen 144 SLGGT-DKVIELEPLSEEEALELFKKRAGRKES--ESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALE 220 (287)
T ss_dssp THHSC-EEEEECSS--HHHHHHHHHHHHTSHS------TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHH
T ss_pred ccccc-ccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 77652 268999999999999999999876541 233455678999999999999999999999977667789999887
Q ss_pred hhhhhhhc---cccccchhhhcccCCCCcchhHHHhhhccCCCCcccChhHHHHHHhhcCccccc
Q 001993 420 NELWELEE---LDEGLLGPLLLSYLDLPPPLKKCFSYCAIFPKDSRLEKDKLIRLWMAQDYLKVK 481 (985)
Q Consensus 420 ~~~~~~~~---~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~Wiaeg~i~~~ 481 (985)
.......+ ....++.++.+||+.||+++|.||+|||+||+++.|+++.|+++|++||||...
T Consensus 221 ~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 221 ELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccccccccccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 75555432 246689999999999999999999999999999999999999999999999764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=2.2e-22 Score=256.13 Aligned_cols=325 Identities=23% Similarity=0.240 Sum_probs=176.2
Q ss_pred cCCcceeecCC--CC-CCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhcccccee
Q 001993 602 RLTCLRSIDGL--PV-GQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHL 678 (985)
Q Consensus 602 ~l~~Lr~L~l~--~~-~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L 678 (985)
.+++|++|+++ .+ ..+|..++++.+|++|+|++|.....+|..++++++|++|++++|.....+|..++++++|++|
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 34455555555 12 2456666667777777777666344566667777777777777666445566667777777777
Q ss_pred ecccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhccccc
Q 001993 679 MNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKS 758 (985)
Q Consensus 679 ~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~ 758 (985)
++++|... ..+|..++++++|++|++..+..... ....+..+++|+ .|.+....- .......+..
T Consensus 218 ~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~----~L~L~~n~l-------~~~~p~~l~~ 282 (968)
T PLN00113 218 YLGYNNLS--GEIPYEIGGLTSLNHLDLVYNNLTGP--IPSSLGNLKNLQ----YLFLYQNKL-------SGPIPPSIFS 282 (968)
T ss_pred ECcCCccC--CcCChhHhcCCCCCEEECcCceeccc--cChhHhCCCCCC----EEECcCCee-------eccCchhHhh
Confidence 77644332 35666677777777776654433210 111233333333 333322110 0011123455
Q ss_pred ccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC-CCCCC
Q 001993 759 KMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP-PLGKL 837 (985)
Q Consensus 759 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l 837 (985)
+++|+.|++++|. ....++..+..+++|+.|++++|...... |.++..+++|+.|+|++|.....+| .++.+
T Consensus 283 l~~L~~L~Ls~n~-----l~~~~p~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~ 355 (968)
T PLN00113 283 LQKLISLDLSDNS-----LSGEIPELVIQLQNLEILHLFSNNFTGKI--PVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355 (968)
T ss_pred ccCcCEEECcCCe-----eccCCChhHcCCCCCcEEECCCCccCCcC--ChhHhcCCCCCEEECcCCCCcCcCChHHhCC
Confidence 6677777777654 11233444566778888888887655432 7777788888888888886655566 47778
Q ss_pred CccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccc-cCCCCCccceeeccccccccccccc------------
Q 001993 838 PCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSII-RDTAFPRLETLEFLDMEKWEEWDDC------------ 904 (985)
Q Consensus 838 ~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fp~L~~L~l~~~~~L~~~~~~------------ 904 (985)
++|+.|+|++|.....++..+.....+..+.+..+......+ ....+++|+.|.+.++.--...+..
T Consensus 356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 435 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435 (968)
T ss_pred CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEEC
Confidence 888888888765434455444333333333333332222221 1234566666666554311111110
Q ss_pred -------cccCcccccccccceeecccccCCCCCCCCCCCCCcCeEEecCch
Q 001993 905 -------EIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYSR 949 (985)
Q Consensus 905 -------~~~~~~~~lp~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~i~~c~ 949 (985)
........+++|+.|++.+|.....+|..+ ..++|+.|++++|.
T Consensus 436 s~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~ 486 (968)
T PLN00113 436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQ 486 (968)
T ss_pred cCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCc
Confidence 000011245666666666665444555433 24566666666664
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=5.4e-22 Score=252.52 Aligned_cols=372 Identities=19% Similarity=0.136 Sum_probs=209.2
Q ss_pred CCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CC-CCCCcccccCCCC
Q 001993 551 WKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PV-GQIPKGIKKLIHL 627 (985)
Q Consensus 551 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~-~~lp~~i~~l~~L 627 (985)
.+++.+.+.++.... ..+..+.++++|++|++++|.. ...+|..+.++++|+.|+++ .+ ..+|..++++.+|
T Consensus 164 ~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l---~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 238 (968)
T PLN00113 164 SSLKVLDLGGNVLVG--KIPNSLTNLTSLEFLTLASNQL---VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238 (968)
T ss_pred CCCCEEECccCcccc--cCChhhhhCcCCCeeeccCCCC---cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCC
Confidence 345566666555421 2344556666677776666642 22244556666677777666 22 2456666677777
Q ss_pred CeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCce
Q 001993 628 RYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAF 707 (985)
Q Consensus 628 r~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~ 707 (985)
++|++++|.....+|..++++++|++|++++|.....+|..+.++++|++|++++|.. ...+|..+.++++|+.|++.
T Consensus 239 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l--~~~~p~~~~~l~~L~~L~l~ 316 (968)
T PLN00113 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL--SGEIPELVIQLQNLEILHLF 316 (968)
T ss_pred CEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee--ccCCChhHcCCCCCcEEECC
Confidence 7777776663345666677777777777776664455666666677777777764332 23456666666777776665
Q ss_pred EecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCC-------------
Q 001993 708 VASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTK------------- 774 (985)
Q Consensus 708 ~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------------- 774 (985)
.+..... ....+..+++|+ .|.+....-. ......+..+.+|+.|+++++....
T Consensus 317 ~n~~~~~--~~~~~~~l~~L~----~L~L~~n~l~-------~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~ 383 (968)
T PLN00113 317 SNNFTGK--IPVALTSLPRLQ----VLQLWSNKFS-------GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF 383 (968)
T ss_pred CCccCCc--CChhHhcCCCCC----EEECcCCCCc-------CcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCC
Confidence 4433221 111223333333 3333221100 0011123344555555555443000
Q ss_pred ------cchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC-CCCCCCccceeeccC
Q 001993 775 ------TKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP-PLGKLPCLETLVLEG 847 (985)
Q Consensus 775 ------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~ 847 (985)
......++..+..+++|+.|++.+|...... |..+..+++|+.|++++|.....+| .+..+++|+.|+|++
T Consensus 384 ~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL--PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred EEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC--ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 0011122233444566777777666544322 6666677777777777775444444 245677788888877
Q ss_pred CCCceEeCCcccCCchhhhhhhhhhhcccccc-cCCCCCccceeeccccccccccccccccCcccccccccceeeccccc
Q 001993 848 MSSVKRLGNGFLGIAEDHQARADQAETASSII-RDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPE 926 (985)
Q Consensus 848 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~ 926 (985)
|.....+|..+ ....+..+.++.+......+ ....+++|+.|+++++.-....+. ....+++|+.|+|++|..
T Consensus 462 n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-----~~~~l~~L~~L~Ls~N~l 535 (968)
T PLN00113 462 NKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD-----ELSSCKKLVSLDLSHNQL 535 (968)
T ss_pred ceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCCh-----HHcCccCCCEEECCCCcc
Confidence 76444444422 22334444444444443332 224577888888887543223332 345789999999999876
Q ss_pred CCCCCCCCCCCCCcCeEEecCchh
Q 001993 927 LKALPDYILGSTSLDKLLIYYSRH 950 (985)
Q Consensus 927 L~~lp~~~~~l~~L~~L~i~~c~~ 950 (985)
...+|..+.++++|+.|++++|..
T Consensus 536 ~~~~p~~~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 536 SGQIPASFSEMPVLSQLDLSQNQL 559 (968)
T ss_pred cccCChhHhCcccCCEEECCCCcc
Confidence 667888888899999999999874
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=2.6e-23 Score=223.28 Aligned_cols=336 Identities=23% Similarity=0.257 Sum_probs=247.8
Q ss_pred CCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC----CCCCCCcccccCCCCCeEecCCCCCccccchh
Q 001993 569 FPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL----PVGQIPKGIKKLIHLRYLALGENPWIKELPEA 644 (985)
Q Consensus 569 ~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~----~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~ 644 (985)
.|..+..+.+|..|.+..|.. ..+..-++.+++||.+++. ....+|..|..|..|..|||++|. +.+.|..
T Consensus 47 vPeEL~~lqkLEHLs~~HN~L----~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~ 121 (1255)
T KOG0444|consen 47 VPEELSRLQKLEHLSMAHNQL----ISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTN 121 (1255)
T ss_pred ChHHHHHHhhhhhhhhhhhhh----HhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchh
Confidence 455555556666666555542 1233346777888888876 345689999999999999999999 9999999
Q ss_pred hcCCCCCcEeeccCcccccccchhh-hhccccceeecccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchh
Q 001993 645 LCELCNLQTLDVSLCHYLKRLPERI-GQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKS 723 (985)
Q Consensus 645 i~~L~~L~~L~l~~~~~l~~lP~~i-~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~ 723 (985)
+..-+++-+|+|++|+ +..+|..+ -+|+.|-.|+|++| ++..+|+.+..|.+||+|.++++.... . -++.
T Consensus 122 LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N---rLe~LPPQ~RRL~~LqtL~Ls~NPL~h----f-QLrQ 192 (1255)
T KOG0444|consen 122 LEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN---RLEMLPPQIRRLSMLQTLKLSNNPLNH----F-QLRQ 192 (1255)
T ss_pred hhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc---hhhhcCHHHHHHhhhhhhhcCCChhhH----H-HHhc
Confidence 9999999999999998 99999765 68999999999965 458899999999999999998665443 1 3445
Q ss_pred hhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCC
Q 001993 724 LNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDT 803 (985)
Q Consensus 724 L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 803 (985)
|+.++.| .+.++++... .......++.++.+|..++++.|. ...+++++..+.+|+.|++++|.+++
T Consensus 193 LPsmtsL----~vLhms~TqR---Tl~N~Ptsld~l~NL~dvDlS~N~------Lp~vPecly~l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 193 LPSMTSL----SVLHMSNTQR---TLDNIPTSLDDLHNLRDVDLSENN------LPIVPECLYKLRNLRRLNLSGNKITE 259 (1255)
T ss_pred Cccchhh----hhhhcccccc---hhhcCCCchhhhhhhhhccccccC------CCcchHHHhhhhhhheeccCcCceee
Confidence 5555533 3333322211 223344567778899999998776 34567888888999999999999887
Q ss_pred CCCCChhhhccccccEEeEeccCCCCcCC-CCCCCCccceeeccCCCCce--EeCCcccCCchhhhhhhhhhhccccccc
Q 001993 804 ISPTSDWMLSLAKLRVLTLRFCNECECLP-PLGKLPCLETLVLEGMSSVK--RLGNGFLGIAEDHQARADQAETASSIIR 880 (985)
Q Consensus 804 ~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (985)
+ ...+..-.+|+.|+|+.| .++.+| .+.+|++|+.|.+.++. +. -+|.+
T Consensus 260 L---~~~~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~Nk-L~FeGiPSG----------------------- 311 (1255)
T KOG0444|consen 260 L---NMTEGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNK-LTFEGIPSG----------------------- 311 (1255)
T ss_pred e---eccHHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCc-ccccCCccc-----------------------
Confidence 7 555566779999999999 466777 48899999999987743 32 22322
Q ss_pred CCCCCccceeeccccccccccccccccCcccccccccceeecccccCCCCCCCCCCCCCcCeEEecCchhhhhhhcCC--
Q 001993 881 DTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYSRHLNNRYNME-- 958 (985)
Q Consensus 881 ~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~i~~c~~l~~~~~~~-- 958 (985)
.+.+-+|+.+...+ ++|+-.+. +.+.+++|+.|.+.. ..|-++|+.+.-++.|+.|+++++|+|...-...
T Consensus 312 IGKL~~Levf~aan-N~LElVPE-----glcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da 384 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAAN-NKLELVPE-----GLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDA 384 (1255)
T ss_pred hhhhhhhHHHHhhc-cccccCch-----hhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCCcchh
Confidence 23456777777766 45555554 678899999999965 4788899999999999999999999986543332
Q ss_pred -CCCCCCCc
Q 001993 959 -TGPEWPKI 966 (985)
Q Consensus 959 -~~~~~~~i 966 (985)
..-+|.+|
T Consensus 385 ~~~lefYNI 393 (1255)
T KOG0444|consen 385 RKKLEFYNI 393 (1255)
T ss_pred hhcceeeec
Confidence 13456555
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=1.4e-20 Score=201.76 Aligned_cols=337 Identities=22% Similarity=0.217 Sum_probs=192.6
Q ss_pred CCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccc-hhhcCCCCCcE
Q 001993 577 TKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELP-EALCELCNLQT 653 (985)
Q Consensus 577 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP-~~i~~L~~L~~ 653 (985)
+..++|++++|.. .++-..+|.++++|+.+.+. .++.+|.......||+.|+|.+|. |.++- +++..++.|++
T Consensus 78 ~~t~~LdlsnNkl---~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 78 SQTQTLDLSNNKL---SHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSALPALRS 153 (873)
T ss_pred cceeeeecccccc---ccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccc-cccccHHHHHhHhhhhh
Confidence 4456677766653 33334556677777766666 566666666666666666666666 55443 34555666666
Q ss_pred eeccCcccccccch-hhhhccccceeecccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhccccCcc
Q 001993 654 LDVSLCHYLKRLPE-RIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEG 732 (985)
Q Consensus 654 L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 732 (985)
|||+.|. +.++|. .+..-.++++|+|++|..+.+.. ..+..+.+|-+|.+..+.....+.- .++.|++|+.|..
T Consensus 154 lDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~--~~F~~lnsL~tlkLsrNrittLp~r--~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 154 LDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLET--GHFDSLNSLLTLKLSRNRITTLPQR--SFKRLPKLESLDL 228 (873)
T ss_pred hhhhhch-hhcccCCCCCCCCCceEEeecccccccccc--ccccccchheeeecccCcccccCHH--Hhhhcchhhhhhc
Confidence 6666665 555553 33444566666666554332211 1244444555554444433332111 2333333333300
Q ss_pred ----------------------eeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCC
Q 001993 733 ----------------------SLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSS 790 (985)
Q Consensus 733 ----------------------~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~ 790 (985)
+|.-+++..+.+ ..|-.+.+++.|+|+.|. ....--.++..+..
T Consensus 229 nrN~irive~ltFqgL~Sl~nlklqrN~I~kL~D---------G~Fy~l~kme~l~L~~N~-----l~~vn~g~lfgLt~ 294 (873)
T KOG4194|consen 229 NRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDD---------GAFYGLEKMEHLNLETNR-----LQAVNEGWLFGLTS 294 (873)
T ss_pred cccceeeehhhhhcCchhhhhhhhhhcCcccccC---------cceeeecccceeecccch-----hhhhhcccccccch
Confidence 222222222222 334455666666666554 11222345556677
Q ss_pred CCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC--CCCCCCccceeeccCCCCceEeCCc-ccCCchhhhh
Q 001993 791 LEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP--PLGKLPCLETLVLEGMSSVKRLGNG-FLGIAEDHQA 867 (985)
Q Consensus 791 L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~-~~~~~~~~~~ 867 (985)
|+.|++++|.+..+. ++.....++|+.|+|++| .++.++ .+..|..|+.|.|+.+ ++.++.++ |.+..+++.+
T Consensus 295 L~~L~lS~NaI~rih--~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~L 370 (873)
T KOG4194|consen 295 LEQLDLSYNAIQRIH--IDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKL 370 (873)
T ss_pred hhhhccchhhhheee--cchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhh
Confidence 777777777766665 444456677777777777 344454 3566777777777773 36666443 4455667777
Q ss_pred hhhhhhcccccccC----CCCCccceeeccccccccccccccccCcccccccccceeecccccCCCCCCCCCCCCCcCeE
Q 001993 868 RADQAETASSIIRD----TAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKL 943 (985)
Q Consensus 868 ~~~~~~~~~~~~~~----~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~~~~l~~L~~L 943 (985)
++.+|+.++.+... .++|+|+.|.|.+ ++++.++.. ....+++|++|++.+++.-.--|..++++ .|++|
T Consensus 371 dLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~kr----Afsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~L 444 (873)
T KOG4194|consen 371 DLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKR----AFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKEL 444 (873)
T ss_pred cCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchh----hhccCcccceecCCCCcceeecccccccc-hhhhh
Confidence 78888877666532 4678888888887 566666653 23468888888888875333335666666 77877
Q ss_pred Eec
Q 001993 944 LIY 946 (985)
Q Consensus 944 ~i~ 946 (985)
.+.
T Consensus 445 v~n 447 (873)
T KOG4194|consen 445 VMN 447 (873)
T ss_pred hhc
Confidence 653
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=7.5e-19 Score=223.42 Aligned_cols=341 Identities=21% Similarity=0.149 Sum_probs=236.5
Q ss_pred CCCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC---CCCCCCcccccCCC
Q 001993 550 SWKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL---PVGQIPKGIKKLIH 626 (985)
Q Consensus 550 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~---~~~~lp~~i~~l~~ 626 (985)
+..+|.+.+.++.. ...|..+ ...+|+.|.+.++.. . .++..+..+++|+.|+++ .+..+| .++.+++
T Consensus 588 p~~Lr~L~~~~~~l---~~lP~~f-~~~~L~~L~L~~s~l---~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~ 658 (1153)
T PLN03210 588 PPKLRLLRWDKYPL---RCMPSNF-RPENLVKLQMQGSKL---E-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATN 658 (1153)
T ss_pred CcccEEEEecCCCC---CCCCCcC-CccCCcEEECcCccc---c-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCc
Confidence 45577777776655 3344444 568899999988753 2 234446789999999998 356677 4889999
Q ss_pred CCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCc
Q 001993 627 LRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGA 706 (985)
Q Consensus 627 Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~ 706 (985)
|++|+|++|..+..+|.++++|++|+.|++++|..+..+|..+ ++++|++|+++ +|..+..+|.. .++|+.|++
T Consensus 659 Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Ls--gc~~L~~~p~~---~~nL~~L~L 732 (1153)
T PLN03210 659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLS--GCSRLKSFPDI---STNISWLDL 732 (1153)
T ss_pred ccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCC--CCCCccccccc---cCCcCeeec
Confidence 9999999998899999999999999999999999999999876 79999999999 77777777753 456777777
Q ss_pred eEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCC
Q 001993 707 FVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQ 786 (985)
Q Consensus 707 ~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~ 786 (985)
..+.....+. . ..+++|.. |.+..+....-+..............++|+.|.++.+. ....++..+.
T Consensus 733 ~~n~i~~lP~---~-~~l~~L~~----L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~-----~l~~lP~si~ 799 (1153)
T PLN03210 733 DETAIEEFPS---N-LRLENLDE----LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP-----SLVELPSSIQ 799 (1153)
T ss_pred CCCccccccc---c-cccccccc----ccccccchhhccccccccchhhhhccccchheeCCCCC-----CccccChhhh
Confidence 6544332111 1 12333332 32222111000000000001112234688999998764 1223455677
Q ss_pred CCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCCCCCCCccceeeccCCCCceEeCCcccCCchhhh
Q 001993 787 PPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPPLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQ 866 (985)
Q Consensus 787 ~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~ 866 (985)
.+++|+.|++++|..... +|..+ ++++|+.|+|++|..+..+|.+ .++|+.|+|+++ .++.+|..+
T Consensus 800 ~L~~L~~L~Ls~C~~L~~--LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n-~i~~iP~si-------- 865 (1153)
T PLN03210 800 NLHKLEHLEIENCINLET--LPTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRT-GIEEVPWWI-------- 865 (1153)
T ss_pred CCCCCCEEECCCCCCcCe--eCCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCC-CCccChHHH--------
Confidence 789999999999864332 26655 6899999999999888777754 468999999885 466666432
Q ss_pred hhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeecccccCCCCCCCC------------
Q 001993 867 ARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALPDYI------------ 934 (985)
Q Consensus 867 ~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp~~~------------ 934 (985)
..+++|+.|++.+|++|+.++. ....+++|+.|++++|+.|+.++..-
T Consensus 866 ---------------~~l~~L~~L~L~~C~~L~~l~~-----~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~ 925 (1153)
T PLN03210 866 ---------------EKFSNLSFLDMNGCNNLQRVSL-----NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNI 925 (1153)
T ss_pred ---------------hcCCCCCEEECCCCCCcCccCc-----ccccccCCCeeecCCCcccccccCCCCchhhhhhcccc
Confidence 3588999999999999998776 44578999999999999998654210
Q ss_pred -CCCCCcCeEEecCchhhh
Q 001993 935 -LGSTSLDKLLIYYSRHLN 952 (985)
Q Consensus 935 -~~l~~L~~L~i~~c~~l~ 952 (985)
..+++...+.+.+|.++.
T Consensus 926 ~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 926 HSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred cccCCchhccccccccCCC
Confidence 123334555677887764
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=1.7e-21 Score=209.44 Aligned_cols=320 Identities=22% Similarity=0.241 Sum_probs=239.6
Q ss_pred CCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCC
Q 001993 551 WKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLR 628 (985)
Q Consensus 551 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr 628 (985)
.+..|+++..+.+ ......+..++.||++++..|... ... +|.-+-++..|.+|||+ .+.+.|..+..-+++-
T Consensus 55 qkLEHLs~~HN~L---~~vhGELs~Lp~LRsv~~R~N~LK-nsG-iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~i 129 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQL---ISVHGELSDLPRLRSVIVRDNNLK-NSG-IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSI 129 (1255)
T ss_pred hhhhhhhhhhhhh---HhhhhhhccchhhHHHhhhccccc-cCC-CCchhcccccceeeecchhhhhhcchhhhhhcCcE
Confidence 4678888888776 445667778999999999888532 123 34446689999999999 7899999999999999
Q ss_pred eEecCCCCCccccchhh-cCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCce
Q 001993 629 YLALGENPWIKELPEAL-CELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAF 707 (985)
Q Consensus 629 ~L~L~~~~~i~~lP~~i-~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~ 707 (985)
+|+|++|+ |..+|.++ -+|..|-+|||++|+ +..+|+.+..|.+|+.|.|++|...... -..+-.|++|++|.++
T Consensus 130 VLNLS~N~-IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQ--LrQLPsmtsL~vLhms 205 (1255)
T KOG0444|consen 130 VLNLSYNN-IETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQ--LRQLPSMTSLSVLHMS 205 (1255)
T ss_pred EEEcccCc-cccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHH--HhcCccchhhhhhhcc
Confidence 99999999 99999874 479999999999998 9999999999999999999977543210 1234457888888887
Q ss_pred EecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCC
Q 001993 708 VASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQP 787 (985)
Q Consensus 708 ~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 787 (985)
+.+..... .+.++..|.+|..+ +++.+++..++. .+-.+.+|+.|+|+.|.-+..... ...
T Consensus 206 ~TqRTl~N-~Ptsld~l~NL~dv--DlS~N~Lp~vPe----------cly~l~~LrrLNLS~N~iteL~~~------~~~ 266 (1255)
T KOG0444|consen 206 NTQRTLDN-IPTSLDDLHNLRDV--DLSENNLPIVPE----------CLYKLRNLRRLNLSGNKITELNMT------EGE 266 (1255)
T ss_pred cccchhhc-CCCchhhhhhhhhc--cccccCCCcchH----------HHhhhhhhheeccCcCceeeeecc------HHH
Confidence 65543321 22256666666655 566666555443 344567899999987762211111 112
Q ss_pred CCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCC-CCcCCC-CCCCCccceeeccCCCCceEeCCcccCCchhh
Q 001993 788 PSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNE-CECLPP-LGKLPCLETLVLEGMSSVKRLGNGFLGIAEDH 865 (985)
Q Consensus 788 ~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~-~~~l~~-l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~ 865 (985)
-.+|++|+++.|....+ |..+..++.|++|.+.+|+. .+.+|+ +|+|.+|+.+...+ +.++-+|+++.
T Consensus 267 W~~lEtLNlSrNQLt~L---P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglc------ 336 (1255)
T KOG0444|consen 267 WENLETLNLSRNQLTVL---PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLC------ 336 (1255)
T ss_pred Hhhhhhhccccchhccc---hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhh------
Confidence 36899999999998888 99999999999999998853 346775 99999999999988 45888888754
Q ss_pred hhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeecccccCCCCC
Q 001993 866 QARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALP 931 (985)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp 931 (985)
.+++|+.|.|.. +.|-.++. .+.-+|-|+.|++.++|+|..-|
T Consensus 337 -----------------RC~kL~kL~L~~-NrLiTLPe-----aIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 337 -----------------RCVKLQKLKLDH-NRLITLPE-----AIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred -----------------hhHHHHHhcccc-cceeechh-----hhhhcCCcceeeccCCcCccCCC
Confidence 356888888864 45555544 55678999999999998887654
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=1.9e-20 Score=200.72 Aligned_cols=331 Identities=21% Similarity=0.242 Sum_probs=225.7
Q ss_pred CeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCc-ccccCCCCC
Q 001993 552 KARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPK-GIKKLIHLR 628 (985)
Q Consensus 552 ~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~-~i~~l~~Lr 628 (985)
+...+++..+.+ ..+|.......+|+.|++.+|.. ...-...+.-+..||+|||+ .+.++|. ++..-.+++
T Consensus 103 nLq~v~l~~N~L---t~IP~f~~~sghl~~L~L~~N~I---~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 103 NLQEVNLNKNEL---TRIPRFGHESGHLEKLDLRHNLI---SSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIK 176 (873)
T ss_pred cceeeeeccchh---hhcccccccccceeEEeeecccc---ccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCce
Confidence 344455554444 33454445556677777777653 33333446677889999998 5677764 455557899
Q ss_pred eEecCCCCCccccch-hhcCCCCCcEeeccCcccccccchhh-hhccccceeecccccccccccC-CCcCCCCCCCCccC
Q 001993 629 YLALGENPWIKELPE-ALCELCNLQTLDVSLCHYLKRLPERI-GQLINLRHLMNSKEEWSRLSYM-PRGMERLTGLRTLG 705 (985)
Q Consensus 629 ~L~L~~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~~lP~~i-~~L~~L~~L~l~~n~~~~l~~~-p~~i~~L~~L~~L~ 705 (985)
+|+|++|. |+.+-. .|..|.+|-+|.|+.|. ++.+|... .+|++|+.|+|..|.. ..+ -..+.+|.+|+.|.
T Consensus 177 ~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~i---rive~ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 177 KLNLASNR-ITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRI---RIVEGLTFQGLPSLQNLK 251 (873)
T ss_pred EEeecccc-ccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccce---eeehhhhhcCchhhhhhh
Confidence 99999999 877653 57888899999999998 88998654 5599999999986654 222 13478888999988
Q ss_pred ceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCC
Q 001993 706 AFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECL 785 (985)
Q Consensus 706 ~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l 785 (985)
+-.++.....+| .+-.+.++.+| .|..+.+..+.. ..+-+++.|+.|++++|. ....-.+++
T Consensus 252 lqrN~I~kL~DG--~Fy~l~kme~l--~L~~N~l~~vn~---------g~lfgLt~L~~L~lS~Na-----I~rih~d~W 313 (873)
T KOG4194|consen 252 LQRNDISKLDDG--AFYGLEKMEHL--NLETNRLQAVNE---------GWLFGLTSLEQLDLSYNA-----IQRIHIDSW 313 (873)
T ss_pred hhhcCcccccCc--ceeeeccccee--ecccchhhhhhc---------ccccccchhhhhccchhh-----hheeecchh
Confidence 877766554445 35566777766 566665544332 456778899999999886 222234556
Q ss_pred CCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC--CCCCCCccceeeccCCCCceE-eCC---ccc
Q 001993 786 QPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP--PLGKLPCLETLVLEGMSSVKR-LGN---GFL 859 (985)
Q Consensus 786 ~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~-l~~---~~~ 859 (985)
+-+++|+.|++++|.+..+. +..+..|..|+.|+|+.| .++.+. .+..+.+|+.|+|+++. +.- +.+ .|.
T Consensus 314 sftqkL~~LdLs~N~i~~l~--~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~-ls~~IEDaa~~f~ 389 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLD--EGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIEDAAVAFN 389 (873)
T ss_pred hhcccceeEeccccccccCC--hhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCe-EEEEEecchhhhc
Confidence 66899999999999998885 677889999999999999 455554 36689999999999854 433 222 233
Q ss_pred CCchhhhhhhhhhhccccccc-CCCCCccceeeccccccccccccccccCcccccccccceee
Q 001993 860 GIAEDHQARADQAETASSIIR-DTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSI 921 (985)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~-~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i 921 (985)
+...+..+.+..|+....... -.+|++|++|+|.+.. +.++... ....| .|++|.+
T Consensus 390 gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~n----AFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 390 GLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA-IASIQPN----AFEPM-ELKELVM 446 (873)
T ss_pred cchhhhheeecCceeeecchhhhccCcccceecCCCCc-ceeeccc----ccccc-hhhhhhh
Confidence 344444455555554433332 3689999999998733 3333321 23345 7888765
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=3.5e-20 Score=190.44 Aligned_cols=357 Identities=20% Similarity=0.222 Sum_probs=242.2
Q ss_pred CCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCC
Q 001993 551 WKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLR 628 (985)
Q Consensus 551 ~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr 628 (985)
.....+-+..++. ........++..+.+|.+..+.. ..+|..++.+..+..|+.+ .+..+|+.++.+..|+
T Consensus 45 v~l~~lils~N~l---~~l~~dl~nL~~l~vl~~~~n~l----~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 45 VDLQKLILSHNDL---EVLREDLKNLACLTVLNVHDNKL----SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLV 117 (565)
T ss_pred cchhhhhhccCch---hhccHhhhcccceeEEEeccchh----hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhh
Confidence 3444455555554 22345566778888888888763 2345557777778888877 6778888888888899
Q ss_pred eEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCceE
Q 001993 629 YLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFV 708 (985)
Q Consensus 629 ~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~ 708 (985)
.|+.+.|. +.++|++|+.+..|+.|+..+|+ +..+|.+++++.+|..|++.+|. +..+|+..-+++.|++|++..
T Consensus 118 ~l~~s~n~-~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~---l~~l~~~~i~m~~L~~ld~~~ 192 (565)
T KOG0472|consen 118 KLDCSSNE-LKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNK---LKALPENHIAMKRLKHLDCNS 192 (565)
T ss_pred hhhccccc-eeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccc---hhhCCHHHHHHHHHHhcccch
Confidence 99988888 88888889999999998888887 88888888888888888887543 467777766688888888876
Q ss_pred ecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCC
Q 001993 709 ASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPP 788 (985)
Q Consensus 709 ~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~ 788 (985)
+.... .++.+..+.+|..| .|.-+.+..+ ..|.+|..|..|++..+. ....-.+.+..+
T Consensus 193 N~L~t---lP~~lg~l~~L~~L--yL~~Nki~~l-----------Pef~gcs~L~Elh~g~N~-----i~~lpae~~~~L 251 (565)
T KOG0472|consen 193 NLLET---LPPELGGLESLELL--YLRRNKIRFL-----------PEFPGCSLLKELHVGENQ-----IEMLPAEHLKHL 251 (565)
T ss_pred hhhhc---CChhhcchhhhHHH--HhhhcccccC-----------CCCCccHHHHHHHhcccH-----HHhhHHHHhccc
Confidence 65554 22233444444332 2332322222 246777888888887654 111112334567
Q ss_pred CCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC-CCCCCCccceeeccCCCCceEeCCcccCCchhhhh
Q 001993 789 SSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP-PLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQA 867 (985)
Q Consensus 789 ~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~ 867 (985)
++|..|++..|....+ |..+.-+.+|.+|++++| .+..+| .+|+| +|+.|.+.|++ ++.+..+.+..+....+
T Consensus 252 ~~l~vLDLRdNklke~---Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vL 325 (565)
T KOG0472|consen 252 NSLLVLDLRDNKLKEV---PDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVL 325 (565)
T ss_pred ccceeeeccccccccC---chHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHH
Confidence 8999999999998888 999999999999999999 556666 59999 99999999987 66666665555554433
Q ss_pred hhhhhhc--------------cc-----ccccCCCCCccceeecccccccccccccc----c------------------
Q 001993 868 RADQAET--------------AS-----SIIRDTAFPRLETLEFLDMEKWEEWDDCE----I------------------ 906 (985)
Q Consensus 868 ~~~~~~~--------------~~-----~~~~~~~fp~L~~L~l~~~~~L~~~~~~~----~------------------ 906 (985)
+...... .. ..+.....-+.+.|.+++ .+++.++... .
T Consensus 326 KyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elP 404 (565)
T KOG0472|consen 326 KYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELP 404 (565)
T ss_pred HHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchHhhhh
Confidence 3222100 00 000111233456666554 2222222100 0
Q ss_pred -----------------------cCcccccccccceeecccccCCCCCCCCCCCCCcCeEEecCc
Q 001993 907 -----------------------AGGKTIMPRLRHLSICWSPELKALPDYILGSTSLDKLLIYYS 948 (985)
Q Consensus 907 -----------------------~~~~~~lp~L~~L~i~~c~~L~~lp~~~~~l~~L~~L~i~~c 948 (985)
....+.+++|..|+++++ -|.++|..++.+..|+.|+|+.+
T Consensus 405 k~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 405 KRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFN 468 (565)
T ss_pred hhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheeccccc
Confidence 002347899999999987 58889988888999999999875
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.68 E-value=1.3e-19 Score=186.25 Aligned_cols=147 Identities=24% Similarity=0.305 Sum_probs=118.1
Q ss_pred EEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCeEec
Q 001993 555 HLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLAL 632 (985)
Q Consensus 555 ~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L 632 (985)
.+.++.+.. ...|..+.+...+..+..+.+.. ..+|..+.++..|+.|+++ ....+|++|+.+..|..|+.
T Consensus 72 vl~~~~n~l---~~lp~aig~l~~l~~l~vs~n~l----s~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 72 VLNVHDNKL---SQLPAAIGELEALKSLNVSHNKL----SELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDA 144 (565)
T ss_pred EEEeccchh---hhCCHHHHHHHHHHHhhcccchH----hhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhc
Confidence 344555554 44677778888888888887753 2355557788888888888 67888999999999999999
Q ss_pred CCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCceEecCC
Q 001993 633 GENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGG 712 (985)
Q Consensus 633 ~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~ 712 (985)
.+|. +..+|..++.+..|..|++.+++ +..+|+..-+++.|+||+...| .++.+|+.++.|.+|..|++..+...
T Consensus 145 ~~N~-i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N---~L~tlP~~lg~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 145 TNNQ-ISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSN---LLETLPPELGGLESLELLYLRRNKIR 219 (565)
T ss_pred cccc-cccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchh---hhhcCChhhcchhhhHHHHhhhcccc
Confidence 9888 99999999999999999999998 8888888877999999988644 45789999999999999988766544
Q ss_pred C
Q 001993 713 K 713 (985)
Q Consensus 713 ~ 713 (985)
.
T Consensus 220 ~ 220 (565)
T KOG0472|consen 220 F 220 (565)
T ss_pred c
Confidence 3
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.59 E-value=4.5e-17 Score=184.68 Aligned_cols=304 Identities=24% Similarity=0.305 Sum_probs=156.7
Q ss_pred hccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccce
Q 001993 600 FDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRH 677 (985)
Q Consensus 600 ~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~ 677 (985)
..+.-.|++||++ .+...|..|+.+.+|+.|+++.|. |..+|.+++++.+|++|+|.+|. +..+|.++..+++|++
T Consensus 41 ~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~-i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 41 VEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY-IRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQY 118 (1081)
T ss_pred hhheeeeEEeeccccccccCCchhhhHHHHhhcccchhh-HhhCchhhhhhhcchhheeccch-hhcCchhHHhhhcccc
Confidence 3333346777776 455566667777777777777766 77777777777777777777665 6677777777777777
Q ss_pred eecccccccccccCCCcCCCCCCCCccCceEecCCCccc--------------ccCCchhhhccccCcceeeeccccccc
Q 001993 678 LMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSK--------------ACSSLKSLNKLKHLEGSLTLRGLGNER 743 (985)
Q Consensus 678 L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~--------------~~~~l~~L~~L~~L~~~L~i~~l~~~~ 743 (985)
|+++.|.+ ..+|.-+..++.+..+...++....... +...+.+...|++ ...|+.+.+.
T Consensus 119 LdlS~N~f---~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~-~ldLr~N~~~--- 191 (1081)
T KOG0618|consen 119 LDLSFNHF---GPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH-QLDLRYNEME--- 191 (1081)
T ss_pred cccchhcc---CCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe-eeecccchhh---
Confidence 77765544 3445444444444333333220000000 0001111122221 0022222111
Q ss_pred CCCCcchhhhcccccccccccEEEEEcC----------CCC---cchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChh
Q 001993 744 DLGDDNDDEKVDLKSKMKLVDLHLRFDS----------TTK---TKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDW 810 (985)
Q Consensus 744 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~----------~~~---~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~ 810 (985)
...+..+.+|+.|....+. ... ............-+.+|++++++.+....+ |+|
T Consensus 192 ---------~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~l---p~w 259 (1081)
T KOG0618|consen 192 ---------VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNL---PEW 259 (1081)
T ss_pred ---------hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcc---hHH
Confidence 1222333333333222221 000 000001122223357899999999888777 899
Q ss_pred hhccccccEEeEeccCC----------------------CCcCCC-CCCCCccceeeccCCCCceEeCCcccCCch--hh
Q 001993 811 MLSLAKLRVLTLRFCNE----------------------CECLPP-LGKLPCLETLVLEGMSSVKRLGNGFLGIAE--DH 865 (985)
Q Consensus 811 ~~~l~~L~~L~L~~~~~----------------------~~~l~~-l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~--~~ 865 (985)
++.+.+|+.|....|.. ++.+|+ ++++.+|++|+|..++ +..+|+.++.... +.
T Consensus 260 i~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~ 338 (1081)
T KOG0618|consen 260 IGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLN 338 (1081)
T ss_pred HHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHH
Confidence 98888888888777642 223444 4568899999998744 7777764332211 11
Q ss_pred hhhhhhhhc-------------------------ccccccCCCCCccceeeccccccccccccccccCccccccccccee
Q 001993 866 QARADQAET-------------------------ASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLS 920 (985)
Q Consensus 866 ~~~~~~~~~-------------------------~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~ 920 (985)
.++.+.+.. ..+.+...+|++||.|+|++ +.|..++.. ....++.|+.|+
T Consensus 339 ~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas----~~~kle~LeeL~ 413 (1081)
T KOG0618|consen 339 TLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPAS----KLRKLEELEELN 413 (1081)
T ss_pred HHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccCCHH----HHhchHHhHHHh
Confidence 222222111 12223346778888888877 344444432 223456666666
Q ss_pred ecccccCCCCC
Q 001993 921 ICWSPELKALP 931 (985)
Q Consensus 921 i~~c~~L~~lp 931 (985)
++++ +|+.+|
T Consensus 414 LSGN-kL~~Lp 423 (1081)
T KOG0618|consen 414 LSGN-KLTTLP 423 (1081)
T ss_pred cccc-hhhhhh
Confidence 6654 444433
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.45 E-value=2.8e-13 Score=159.76 Aligned_cols=252 Identities=19% Similarity=0.160 Sum_probs=151.2
Q ss_pred ceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccc
Q 001993 606 LRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKE 683 (985)
Q Consensus 606 Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n 683 (985)
-..|+++ .+..+|..+. .+|+.|++.+|. ++.+|. .+++|++|++++|. +..+|.. .++|++|++++|
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~-Lt~LP~---lp~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNN-LTSLPA---LPPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCc-CCCCCC---CCCCCcEEEecCCc-cCcccCc---ccccceeeccCC
Confidence 4456666 5667777665 367888888777 777775 25678888888776 7777743 357777777755
Q ss_pred cccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccc
Q 001993 684 EWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLV 763 (985)
Q Consensus 684 ~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~ 763 (985)
.. ..+|... ++|+.|++..+.... .+ ..+++|+.| .++.+.+..++. ...+|+
T Consensus 273 ~L---~~Lp~lp---~~L~~L~Ls~N~Lt~---LP---~~p~~L~~L--dLS~N~L~~Lp~-------------lp~~L~ 325 (788)
T PRK15387 273 PL---THLPALP---SGLCKLWIFGNQLTS---LP---VLPPGLQEL--SVSDNQLASLPA-------------LPSELC 325 (788)
T ss_pred ch---hhhhhch---hhcCEEECcCCcccc---cc---cccccccee--ECCCCccccCCC-------------Cccccc
Confidence 44 3344322 345555554433222 11 011233322 222222221111 012455
Q ss_pred cEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCCCCCCCcccee
Q 001993 764 DLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPPLGKLPCLETL 843 (985)
Q Consensus 764 ~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L 843 (985)
.|.++.|.. ..++. .+.+|+.|++++|....+ |.. ..+|+.|++++|. +..+|.+ .++|+.|
T Consensus 326 ~L~Ls~N~L------~~LP~---lp~~Lq~LdLS~N~Ls~L---P~l---p~~L~~L~Ls~N~-L~~LP~l--~~~L~~L 387 (788)
T PRK15387 326 KLWAYNNQL------TSLPT---LPSGLQELSVSDNQLASL---PTL---PSELYKLWAYNNR-LTSLPAL--PSGLKEL 387 (788)
T ss_pred ccccccCcc------ccccc---cccccceEecCCCccCCC---CCC---Ccccceehhhccc-cccCccc--ccccceE
Confidence 666665441 11111 135788888888877766 532 3467778888774 4456643 3578888
Q ss_pred eccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeecc
Q 001993 844 VLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICW 923 (985)
Q Consensus 844 ~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~ 923 (985)
+|+++. +..+|. .+++|+.|+++++ .+..++. .+.+|+.|++++
T Consensus 388 dLs~N~-Lt~LP~--------------------------l~s~L~~LdLS~N-~LssIP~--------l~~~L~~L~Ls~ 431 (788)
T PRK15387 388 IVSGNR-LTSLPV--------------------------LPSELKELMVSGN-RLTSLPM--------LPSGLLSLSVYR 431 (788)
T ss_pred EecCCc-ccCCCC--------------------------cccCCCEEEccCC-cCCCCCc--------chhhhhhhhhcc
Confidence 887754 444432 2357888988884 4555543 245788899988
Q ss_pred cccCCCCCCCCCCCCCcCeEEecCch
Q 001993 924 SPELKALPDYILGSTSLDKLLIYYSR 949 (985)
Q Consensus 924 c~~L~~lp~~~~~l~~L~~L~i~~c~ 949 (985)
| +++.+|..+.++++|+.|++++++
T Consensus 432 N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 432 N-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred C-cccccChHHhhccCCCeEECCCCC
Confidence 6 688899888889999999999887
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.40 E-value=3.1e-15 Score=170.04 Aligned_cols=99 Identities=21% Similarity=0.277 Sum_probs=72.2
Q ss_pred eEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCeE
Q 001993 553 ARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYL 630 (985)
Q Consensus 553 ~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L 630 (985)
...+.+.++.. ..+|..+...++|+.|.++.+.. .. .|....++++|++|.|. ....+|.++..+++|+||
T Consensus 47 L~~l~lsnn~~---~~fp~~it~l~~L~~ln~s~n~i---~~-vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~L 119 (1081)
T KOG0618|consen 47 LKSLDLSNNQI---SSFPIQITLLSHLRQLNLSRNYI---RS-VPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYL 119 (1081)
T ss_pred eEEeecccccc---ccCCchhhhHHHHhhcccchhhH---hh-CchhhhhhhcchhheeccchhhcCchhHHhhhccccc
Confidence 55566666655 45677777888888888887752 22 44556788888888887 677788888888888888
Q ss_pred ecCCCCCccccchhhcCCCCCcEeeccCc
Q 001993 631 ALGENPWIKELPEALCELCNLQTLDVSLC 659 (985)
Q Consensus 631 ~L~~~~~i~~lP~~i~~L~~L~~L~l~~~ 659 (985)
++++|. ....|..+..+..+..++.++|
T Consensus 120 dlS~N~-f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 120 DLSFNH-FGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred ccchhc-cCCCchhHHhhhHHHHHhhhcc
Confidence 888887 7777877777666666666665
No 16
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.39 E-value=4.1e-11 Score=152.23 Aligned_cols=276 Identities=15% Similarity=0.181 Sum_probs=171.8
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeC-CCCCHHHHHHHHHHHhcCCCCC-------------CCC
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVS-EPFDDIRIAKAILESLKGSATN-------------AVE 280 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~-------------~~~ 280 (985)
..+++.|+|++|.||||++..+... ++.++|+++. ..-++..+...++..+...... ..+
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 104 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYAS 104 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCC
Confidence 5689999999999999999998852 2368999986 4446667777777777421111 012
Q ss_pred HHHHHHHHHHHhc--CceEEEEecCCCCCCcccHHH-HHhhhcCCCCCcEEEEEcCchhhHH--hhcCcccccccCC---
Q 001993 281 SETVLKQLRESIE--GKKFFLVLDDVWTEEPQNWEQ-LLGCLRCGSKESRILVTTRNEKVAI--AIGTTKFNIIPIE--- 352 (985)
Q Consensus 281 ~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs~iivTtR~~~v~~--~~~~~~~~~~~l~--- 352 (985)
...+...+...+. +.+++|||||+...+...... +...++....+.++|||||...... ..... .....+.
T Consensus 105 ~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~-~~~~~l~~~~ 183 (903)
T PRK04841 105 LSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVR-DQLLEIGSQQ 183 (903)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhc-CcceecCHHh
Confidence 2233333333332 679999999997765444443 3333444456678989999843211 11111 1244555
Q ss_pred -CCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhhhcCCC-hHHHHHHHHhhhhhhhcc-c
Q 001993 353 -LLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLLRFKGK-IEEWQRVLENELWELEEL-D 429 (985)
Q Consensus 353 -~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~-~~~w~~~~~~~~~~~~~~-~ 429 (985)
+|+.+|+.++|........ ..+.+.+|.+.|+|.|+++..++..+..... .... .+.+... .
T Consensus 184 l~f~~~e~~~ll~~~~~~~~--------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~-------~~~~~~~~~ 248 (903)
T PRK04841 184 LAFDHQEAQQFFDQRLSSPI--------EAAESSRLCDDVEGWATALQLIALSARQNNSSLHDS-------ARRLAGINA 248 (903)
T ss_pred CCCCHHHHHHHHHhccCCCC--------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhh-------hHhhcCCCc
Confidence 9999999999987543321 1244778999999999999998887754322 1110 1111111 1
Q ss_pred cccchhhh-cccCCCCcchhHHHhhhccCCCCcccChhHHHHHHhhcCcccccCccchhhHhHHHHHHHhhccccccccC
Q 001993 430 EGLLGPLL-LSYLDLPPPLKKCFSYCAIFPKDSRLEKDKLIRLWMAQDYLKVKGREDMVVGEGYFENLAMRSLFQDFERS 508 (985)
Q Consensus 430 ~~~~~~l~-~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~ 508 (985)
..+...+. -.++.||++.+..+...|+++ .|+.+.+-.. .. .+.+...+++|...+++......
T Consensus 249 ~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l------~~------~~~~~~~L~~l~~~~l~~~~~~~ 313 (903)
T PRK04841 249 SHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRV------TG------EENGQMRLEELERQGLFIQRMDD 313 (903)
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHH------cC------CCcHHHHHHHHHHCCCeeEeecC
Confidence 22333333 247899999999999999996 3443322211 11 13456789999999997532221
Q ss_pred CCCCCeEEEEecchHHHHHHHhhc
Q 001993 509 EHDGGKIISCQMHDMVHDFSQFLT 532 (985)
Q Consensus 509 ~~~~~~~~~~~mHdlv~d~~~~~~ 532 (985)
+ ...|++|++++++.....
T Consensus 314 ---~--~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 314 ---S--GEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ---C--CCEEehhHHHHHHHHHHH
Confidence 1 123788999999987653
No 17
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.36 E-value=2.9e-13 Score=163.36 Aligned_cols=309 Identities=24% Similarity=0.192 Sum_probs=190.9
Q ss_pred cccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCCC----CCCCCcc-cccCCCCCeEecCCCCCccccchhhc
Q 001993 572 MVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGLP----VGQIPKG-IKKLIHLRYLALGENPWIKELPEALC 646 (985)
Q Consensus 572 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~----~~~lp~~-i~~l~~Lr~L~L~~~~~i~~lP~~i~ 646 (985)
....+...|.+.+.++....+ +. -..++.|++|-+.. +..++.. |..+++||+|||++|..+.+||++|+
T Consensus 518 ~~~~~~~~rr~s~~~~~~~~~----~~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~ 592 (889)
T KOG4658|consen 518 QVKSWNSVRRMSLMNNKIEHI----AG-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG 592 (889)
T ss_pred cccchhheeEEEEeccchhhc----cC-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh
Confidence 334556777777766643111 11 12334566666552 4555543 77899999999999988999999999
Q ss_pred CCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCceEecCCCcccccCCchhhhc
Q 001993 647 ELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGKSSKACSSLKSLNK 726 (985)
Q Consensus 647 ~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~ 726 (985)
+|.+|++|+++++. +..+|.++.+|.+|.+|++.. ...+..+|..+..|++|++|.++...... +...+.++.+
T Consensus 593 ~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~--~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~---~~~~l~el~~ 666 (889)
T KOG4658|consen 593 ELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEV--TGRLESIPGILLELQSLRVLRLPRSALSN---DKLLLKELEN 666 (889)
T ss_pred hhhhhhcccccCCC-ccccchHHHHHHhhheecccc--ccccccccchhhhcccccEEEeecccccc---chhhHHhhhc
Confidence 99999999999998 999999999999999999983 43444555556669999999987654221 2225566666
Q ss_pred cccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCC
Q 001993 727 LKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISP 806 (985)
Q Consensus 727 L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 806 (985)
|++|+ .+.+..... .....+..+..|. ...+.+.+.++.....
T Consensus 667 Le~L~-~ls~~~~s~---------~~~e~l~~~~~L~-------------------------~~~~~l~~~~~~~~~~-- 709 (889)
T KOG4658|consen 667 LEHLE-NLSITISSV---------LLLEDLLGMTRLR-------------------------SLLQSLSIEGCSKRTL-- 709 (889)
T ss_pred ccchh-hheeecchh---------HhHhhhhhhHHHH-------------------------HHhHhhhhccccccee--
Confidence 66554 333321100 0000111111111 1112222222222222
Q ss_pred CChhhhccccccEEeEeccCCCCcCC-C-----CCC-CCccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccc
Q 001993 807 TSDWMLSLAKLRVLTLRFCNECECLP-P-----LGK-LPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSII 879 (985)
Q Consensus 807 ~p~~~~~l~~L~~L~L~~~~~~~~l~-~-----l~~-l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (985)
+..+..+.+|+.|.+.+|...+... + ... +++|..+.+.+|+.++.+...
T Consensus 710 -~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~---------------------- 766 (889)
T KOG4658|consen 710 -ISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL---------------------- 766 (889)
T ss_pred -ecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh----------------------
Confidence 5566789999999999997654221 1 112 567777777777755443221
Q ss_pred cCCCCCccceeeccccccccccccccccC-----cccccccccce-eecccccCCCCCCCCCCCCCcCeEEecCchhhhh
Q 001993 880 RDTAFPRLETLEFLDMEKWEEWDDCEIAG-----GKTIMPRLRHL-SICWSPELKALPDYILGSTSLDKLLIYYSRHLNN 953 (985)
Q Consensus 880 ~~~~fp~L~~L~l~~~~~L~~~~~~~~~~-----~~~~lp~L~~L-~i~~c~~L~~lp~~~~~l~~L~~L~i~~c~~l~~ 953 (985)
...|+|+.|.+.+|+.+++........ ....|+++..+ .+.+.+.+..+-..--..+.|..+.+..||++..
T Consensus 767 --~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~ 844 (889)
T KOG4658|consen 767 --LFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGK 844 (889)
T ss_pred --hccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCccccc
Confidence 247899999999998887765532111 12356666666 4655555554321111233489999999998764
No 18
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.31 E-value=5.8e-10 Score=126.92 Aligned_cols=303 Identities=14% Similarity=0.110 Sum_probs=178.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++||++++++|...+...-. +.....+.|+|++|+|||++++.++++.......-..+++++....
T Consensus 31 ~l~~Re~e~~~l~~~l~~~~~-------------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 31 NLPHREEQIEELAFALRPALR-------------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHhC-------------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 799999999999999864320 1334567899999999999999999843222212346677777777
Q ss_pred CHHHHHHHHHHHhcCCC--CCCCCHHHHHHHHHHHhc--CceEEEEecCCCCCC----cccHHHHHhhhcCCCCCcE--E
Q 001993 259 DDIRIAKAILESLKGSA--TNAVESETVLKQLRESIE--GKKFFLVLDDVWTEE----PQNWEQLLGCLRCGSKESR--I 328 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~----~~~~~~l~~~l~~~~~gs~--i 328 (985)
+...++..|++++.+.. ....+.+++...+.+.+. +++.+||||+++... .+.+..+...+.. ..+++ |
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~v 176 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGV 176 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEE
Confidence 88899999999997622 223355667777777775 467899999996532 1223333332221 22333 6
Q ss_pred EEEcCchhhHHhhcC-----cccccccCCCCChHHHHHHHHHHhcCCCC-CcccchhHHHHHHHHHHhcCCChhHHHHHH
Q 001993 329 LVTTRNEKVAIAIGT-----TKFNIIPIELLSDEDCWSIFSQLALSRRL-DIEESENFENIGRQIVSKCKGLPLAVKTLG 402 (985)
Q Consensus 329 ivTtR~~~v~~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~-~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 402 (985)
|.++....+...... .....+.+.+++.++..+++..++..... ..-....++.+++......|..+.|+..+-
T Consensus 177 I~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~ 256 (394)
T PRK00411 177 IGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLR 256 (394)
T ss_pred EEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 666665544332211 11246789999999999999887632210 001223333344444344566777776664
Q ss_pred hhh--h--cC-C--ChHHHHHHHHhhhhhhhccccccchhhhcccCCCCcchhHHHhhhccCCC--CcccChhHHHHH--
Q 001993 403 SLL--R--FK-G--KIEEWQRVLENELWELEELDEGLLGPLLLSYLDLPPPLKKCFSYCAIFPK--DSRLEKDKLIRL-- 471 (985)
Q Consensus 403 ~~L--~--~~-~--~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp~--~~~i~~~~Li~~-- 471 (985)
.+. + .. . +.+....+..... .....-.+..||.+.|..+..++..-+ ...+...++...
T Consensus 257 ~a~~~a~~~~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~ 326 (394)
T PRK00411 257 RAGLIAEREGSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYK 326 (394)
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 432 1 11 1 4455555444320 112234578899988877665553321 133555555432
Q ss_pred HhhcCcccccCccchhhHhHHHHHHHhhcccccccc
Q 001993 472 WMAQDYLKVKGREDMVVGEGYFENLAMRSLFQDFER 507 (985)
Q Consensus 472 Wiaeg~i~~~~~~~~~~~~~~~~~L~~~~ll~~~~~ 507 (985)
.+++.+-. ...+...-..|+.+|...+++.....
T Consensus 327 ~l~~~~~~--~~~~~~~~~~~l~~L~~~glI~~~~~ 360 (394)
T PRK00411 327 ELCEELGY--EPRTHTRFYEYINKLDMLGIINTRYS 360 (394)
T ss_pred HHHHHcCC--CcCcHHHHHHHHHHHHhcCCeEEEEe
Confidence 23322111 01122344669999999999986543
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.25 E-value=2.4e-13 Score=124.33 Aligned_cols=133 Identities=21% Similarity=0.338 Sum_probs=112.8
Q ss_pred cccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCC
Q 001993 572 MVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELC 649 (985)
Q Consensus 572 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~ 649 (985)
.+.++++...|.++.+.. .. .|.-+..+.+|.+|+++ .+..+|.+|+.|++||.|++.-|. +..+|..++.++
T Consensus 28 gLf~~s~ITrLtLSHNKl---~~-vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p 102 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKL---TV-VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFP 102 (264)
T ss_pred cccchhhhhhhhcccCce---ee-cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCc
Confidence 445677888888888763 22 33347788999999998 789999999999999999999998 999999999999
Q ss_pred CCcEeeccCcccc--cccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCceEecCCC
Q 001993 650 NLQTLDVSLCHYL--KRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGK 713 (985)
Q Consensus 650 ~L~~L~l~~~~~l--~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~ 713 (985)
-|++|||++|+ + ..+|..+..|+.|+-|+++.|++ +.+|..+++|++||.|.+..++...
T Consensus 103 ~levldltynn-l~e~~lpgnff~m~tlralyl~dndf---e~lp~dvg~lt~lqil~lrdndll~ 164 (264)
T KOG0617|consen 103 ALEVLDLTYNN-LNENSLPGNFFYMTTLRALYLGDNDF---EILPPDVGKLTNLQILSLRDNDLLS 164 (264)
T ss_pred hhhhhhccccc-cccccCCcchhHHHHHHHHHhcCCCc---ccCChhhhhhcceeEEeeccCchhh
Confidence 99999999987 4 46899999999999999998766 7899999999999999887665554
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.25 E-value=1.1e-11 Score=147.69 Aligned_cols=89 Identities=24% Similarity=0.359 Sum_probs=54.6
Q ss_pred ceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccc
Q 001993 606 LRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKE 683 (985)
Q Consensus 606 Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n 683 (985)
...|+++ .+..+|..+. .+|+.|+|++|. +..+|..+. .+|++|++++|. +..+|..+. .+|+.|++++|
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~-LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDNNE-LKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecCCC-CCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCC
Confidence 4455555 5556666553 467777777776 777776554 477777777776 667776543 36777777744
Q ss_pred cccccccCCCcCCCCCCCCccCce
Q 001993 684 EWSRLSYMPRGMERLTGLRTLGAF 707 (985)
Q Consensus 684 ~~~~l~~~p~~i~~L~~L~~L~~~ 707 (985)
. +..+|..+. ++|+.|++.
T Consensus 252 ~---L~~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 252 R---ITELPERLP--SALQSLDLF 270 (754)
T ss_pred c---cCcCChhHh--CCCCEEECc
Confidence 3 345555443 356666554
No 21
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.24 E-value=2.6e-09 Score=120.26 Aligned_cols=304 Identities=16% Similarity=0.128 Sum_probs=172.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhh-ccC---CceEEEEe
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVR-NHF---NEKIWVCV 254 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f---~~~~wv~~ 254 (985)
.++||++++++|..++...- . +.....+.|+|++|+|||++++.+++...-. ... -..+|+++
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~----------~---~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPIL----------R---GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHH----------c---CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 69999999999999987432 0 1334578999999999999999999842111 111 13568888
Q ss_pred CCCCCHHHHHHHHHHHhcC---CC-CCCCCHHHHHHHHHHHhc--CceEEEEecCCCCCC---cccHHHHHhhhcC-CC-
Q 001993 255 SEPFDDIRIAKAILESLKG---SA-TNAVESETVLKQLRESIE--GKKFFLVLDDVWTEE---PQNWEQLLGCLRC-GS- 323 (985)
Q Consensus 255 s~~~~~~~~~~~i~~~l~~---~~-~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---~~~~~~l~~~l~~-~~- 323 (985)
....+...++..|++++.. .. ....+.++....+.+.+. +++++||||+++... ......+...... ..
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~ 162 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLD 162 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCC
Confidence 7777888999999999842 21 122344555566666663 568999999997542 1112222221101 11
Q ss_pred -CCcEEEEEcCchhhHHhhc-----CcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhH
Q 001993 324 -KESRILVTTRNEKVAIAIG-----TTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLA 397 (985)
Q Consensus 324 -~gs~iivTtR~~~v~~~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 397 (985)
....+|.+|........+. ......+.+.+++.++..+++..++..........++..+....++....|.|-.
T Consensus 163 ~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~ 242 (365)
T TIGR02928 163 NAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARK 242 (365)
T ss_pred CCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHH
Confidence 2234555555443322211 1112468899999999999999876421111012233344556677777888854
Q ss_pred H-HHHHhhh----hcC---CChHHHHHHHHhhhhhhhccccccchhhhcccCCCCcchhHHHhhhccCC--CCcccChhH
Q 001993 398 V-KTLGSLL----RFK---GKIEEWQRVLENELWELEELDEGLLGPLLLSYLDLPPPLKKCFSYCAIFP--KDSRLEKDK 467 (985)
Q Consensus 398 i-~~~~~~L----~~~---~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~cfl~~a~fp--~~~~i~~~~ 467 (985)
+ ..+-.+. ..+ -+.+....+..... .....-++..||.+.|..+..++..- .+..+...+
T Consensus 243 al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~ 312 (365)
T TIGR02928 243 AIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGE 312 (365)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHH
Confidence 3 3322211 111 13344443333210 11223356688888886665554221 334466666
Q ss_pred HHHHHh--hcCcccccCccchhhHhHHHHHHHhhcccccccc
Q 001993 468 LIRLWM--AQDYLKVKGREDMVVGEGYFENLAMRSLFQDFER 507 (985)
Q Consensus 468 Li~~Wi--aeg~i~~~~~~~~~~~~~~~~~L~~~~ll~~~~~ 507 (985)
+...+- ++.+ . ...........++..|...+++.....
T Consensus 313 ~~~~y~~~~~~~-~-~~~~~~~~~~~~l~~l~~~gli~~~~~ 352 (365)
T TIGR02928 313 VYEVYKEVCEDI-G-VDPLTQRRISDLLNELDMLGLVEAEER 352 (365)
T ss_pred HHHHHHHHHHhc-C-CCCCcHHHHHHHHHHHHhcCCeEEEEE
Confidence 665321 2211 1 111222556778999999999987543
No 22
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.19 E-value=1.4e-09 Score=116.84 Aligned_cols=185 Identities=18% Similarity=0.206 Sum_probs=117.5
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh--
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI-- 292 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-- 292 (985)
+..++.|+|++|+||||+++.+++.... ..+ ..+|+ +....+..+++..|+..++.... ..+.......+.+.+
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE-GRDKAALLRELEDFLIE 117 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999984221 111 12233 33456778889999988865432 233333333333322
Q ss_pred ---cCceEEEEecCCCCCCcccHHHHHhhhcC---CCCCcEEEEEcCchhhHHhhc--------CcccccccCCCCChHH
Q 001993 293 ---EGKKFFLVLDDVWTEEPQNWEQLLGCLRC---GSKESRILVTTRNEKVAIAIG--------TTKFNIIPIELLSDED 358 (985)
Q Consensus 293 ---~~k~~LlVlDdv~~~~~~~~~~l~~~l~~---~~~gs~iivTtR~~~v~~~~~--------~~~~~~~~l~~L~~~e 358 (985)
.+++.++|+||+|......++.+...... ......|++|.... ....+. ......+++.+++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 57889999999988766667766543321 12223456665432 222211 1112467899999999
Q ss_pred HHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhh
Q 001993 359 CWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLL 405 (985)
Q Consensus 359 ~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L 405 (985)
..+++...+...+.. ....-..+..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~-~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNR-DAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCC-CCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999998776433211 1112234678999999999999999988876
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.19 E-value=5.7e-11 Score=140.49 Aligned_cols=91 Identities=22% Similarity=0.190 Sum_probs=50.7
Q ss_pred CCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEe
Q 001993 577 TKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTL 654 (985)
Q Consensus 577 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L 654 (985)
++|+.|.+.+|... . +|. ..++|++|+++ .+..+|.. ..+|+.|++++|. +..+|.. +.+|+.|
T Consensus 222 ~~L~~L~L~~N~Lt---~-LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~l---p~~L~~L 287 (788)
T PRK15387 222 AHITTLVIPDNNLT---S-LPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP-LTHLPAL---PSGLCKL 287 (788)
T ss_pred cCCCEEEccCCcCC---C-CCC---CCCCCcEEEecCCccCcccCc---ccccceeeccCCc-hhhhhhc---hhhcCEE
Confidence 35677777666431 1 121 23556666666 44555532 2456666776666 6666652 2456666
Q ss_pred eccCcccccccchhhhhccccceeecccccc
Q 001993 655 DVSLCHYLKRLPERIGQLINLRHLMNSKEEW 685 (985)
Q Consensus 655 ~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~ 685 (985)
++++|. +..+|.. +++|++|++++|..
T Consensus 288 ~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L 314 (788)
T PRK15387 288 WIFGNQ-LTSLPVL---PPGLQELSVSDNQL 314 (788)
T ss_pred ECcCCc-ccccccc---ccccceeECCCCcc
Confidence 676665 6666642 35667777765433
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.18 E-value=1e-12 Score=120.30 Aligned_cols=161 Identities=22% Similarity=0.282 Sum_probs=100.3
Q ss_pred cccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCC
Q 001993 621 IKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTG 700 (985)
Q Consensus 621 i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~ 700 (985)
+..+.+...|.|++|+ +..+|+.|..|.+|+.|++.+|. ++.+|..|+.|++|++|+++ .+++..+|.++|.++.
T Consensus 29 Lf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvg---mnrl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVG---MNRLNILPRGFGSFPA 103 (264)
T ss_pred ccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecc---hhhhhcCccccCCCch
Confidence 3445566667777777 77777778888888888887777 77788888888888888776 3345667788888777
Q ss_pred CCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHh
Q 001993 701 LRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRV 780 (985)
Q Consensus 701 L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 780 (985)
|+.|++..+..... ..+.. |..+.-|+.|.|+.++ .+.
T Consensus 104 levldltynnl~e~-~lpgn-----------------------------------ff~m~tlralyl~dnd------fe~ 141 (264)
T KOG0617|consen 104 LEVLDLTYNNLNEN-SLPGN-----------------------------------FFYMTTLRALYLGDND------FEI 141 (264)
T ss_pred hhhhhccccccccc-cCCcc-----------------------------------hhHHHHHHHHHhcCCC------ccc
Confidence 77777654322210 00001 1122223333333222 223
Q ss_pred hhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCC
Q 001993 781 VLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLP 832 (985)
Q Consensus 781 ~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~ 832 (985)
++..+..+.+|+-|.+..|....+ |..++.+..|+.|.+-+| .++.+|
T Consensus 142 lp~dvg~lt~lqil~lrdndll~l---pkeig~lt~lrelhiqgn-rl~vlp 189 (264)
T KOG0617|consen 142 LPPDVGKLTNLQILSLRDNDLLSL---PKEIGDLTRLRELHIQGN-RLTVLP 189 (264)
T ss_pred CChhhhhhcceeEEeeccCchhhC---cHHHHHHHHHHHHhcccc-eeeecC
Confidence 333444556677777766665555 888888888888888877 445555
No 25
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.11 E-value=1.9e-10 Score=120.85 Aligned_cols=197 Identities=21% Similarity=0.260 Sum_probs=101.6
Q ss_pred eecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCC
Q 001993 180 IRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFD 259 (985)
Q Consensus 180 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 259 (985)
|+||+.|+++|.+++..+ ..+.+.|+|+.|+|||+|++++.+. .+..-..++|+...+...
T Consensus 1 F~gR~~el~~l~~~l~~~-----------------~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~ 61 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG-----------------PSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESN 61 (234)
T ss_dssp S-S-HHHHHHHHHCHHH-------------------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSH
T ss_pred CCCHHHHHHHHHHHHHhh-----------------cCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchh
Confidence 789999999999998743 3468999999999999999999983 322212444554444332
Q ss_pred HHHHHHHH--------------HHHhcCCCC------CCCCHHHHHHHHHHHhc--CceEEEEecCCCCCC------ccc
Q 001993 260 DIRIAKAI--------------LESLKGSAT------NAVESETVLKQLRESIE--GKKFFLVLDDVWTEE------PQN 311 (985)
Q Consensus 260 ~~~~~~~i--------------~~~l~~~~~------~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~ 311 (985)
.. ....+ ...+..... ...........+.+.+. +++++||+||+.... ..-
T Consensus 62 ~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~ 140 (234)
T PF01637_consen 62 ES-SLRSFIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDF 140 (234)
T ss_dssp HH-HHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHH
T ss_pred hh-HHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHH
Confidence 22 22222 111111110 01111222333333332 456999999995433 111
Q ss_pred HHHHHhhhcC--CCCCcEEEEEcCchhhHHh-hcC-----cccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHH
Q 001993 312 WEQLLGCLRC--GSKESRILVTTRNEKVAIA-IGT-----TKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENI 383 (985)
Q Consensus 312 ~~~l~~~l~~--~~~gs~iivTtR~~~v~~~-~~~-----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~ 383 (985)
...+...+.. ......+|+++-...+... ... .....+.+++|+.+++++++....... . .. +.-++.
T Consensus 141 ~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~--~~-~~~~~~ 216 (234)
T PF01637_consen 141 LKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-I--KL-PFSDED 216 (234)
T ss_dssp HHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC----------HHH
T ss_pred HHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-h--cc-cCCHHH
Confidence 2234444432 2233344455444443332 110 112459999999999999999865332 1 11 223455
Q ss_pred HHHHHHhcCCChhHHHH
Q 001993 384 GRQIVSKCKGLPLAVKT 400 (985)
Q Consensus 384 ~~~i~~~c~GlPLai~~ 400 (985)
.++|+..+||+|..|..
T Consensus 217 ~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 217 IEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp HHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHhCCCHHHHhc
Confidence 79999999999998864
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.10 E-value=1.7e-10 Score=137.55 Aligned_cols=243 Identities=18% Similarity=0.202 Sum_probs=135.2
Q ss_pred eEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCeE
Q 001993 553 ARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYL 630 (985)
Q Consensus 553 ~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L 630 (985)
...+.+....+ ..+|..+ .+.++.|++++|... . +|..+ +.+|+.|+++ .+..+|..+. .+|+.|
T Consensus 180 ~~~L~L~~~~L---tsLP~~I--p~~L~~L~Ls~N~Lt---s-LP~~l--~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L 246 (754)
T PRK15370 180 KTELRLKILGL---TTIPACI--PEQITTLILDNNELK---S-LPENL--QGNIKTLYANSNQLTSIPATLP--DTIQEM 246 (754)
T ss_pred ceEEEeCCCCc---CcCCccc--ccCCcEEEecCCCCC---c-CChhh--ccCCCEEECCCCccccCChhhh--ccccEE
Confidence 44566655554 2234333 246888888777532 2 22212 2367777776 4556665543 367777
Q ss_pred ecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCceEec
Q 001993 631 ALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVAS 710 (985)
Q Consensus 631 ~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~ 710 (985)
+|++|. +..+|..+. .+|++|++++|+ +..+|..+. .+|++|++++|. +..+|..+. ++|+.|++..+.
T Consensus 247 ~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~---Lt~LP~~lp--~sL~~L~Ls~N~ 315 (754)
T PRK15370 247 ELSINR-ITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNS---IRTLPAHLP--SGITHLNVQSNS 315 (754)
T ss_pred ECcCCc-cCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCc---cccCcccch--hhHHHHHhcCCc
Confidence 777777 677776654 467777777665 666776553 467777777543 344554332 244444443221
Q ss_pred CCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCC
Q 001993 711 GGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSS 790 (985)
Q Consensus 711 ~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~ 790 (985)
... +.. ...++|+.|.++.|.. ..++..+ +++
T Consensus 316 Lt~----------------------------LP~------------~l~~sL~~L~Ls~N~L------t~LP~~l--~~s 347 (754)
T PRK15370 316 LTA----------------------------LPE------------TLPPGLKTLEAGENAL------TSLPASL--PPE 347 (754)
T ss_pred ccc----------------------------CCc------------cccccceeccccCCcc------ccCChhh--cCc
Confidence 111 000 0012455555554431 1112222 357
Q ss_pred CCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCC-CCCCCccceeeccCCCCceEeCCcccCCchhhhhhh
Q 001993 791 LEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPP-LGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARA 869 (985)
Q Consensus 791 L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~ 869 (985)
|+.|++++|....+ |..+ .++|+.|+|++|. +..+|. +. ++|+.|++++|. +..+|..+...
T Consensus 348 L~~L~Ls~N~L~~L---P~~l--p~~L~~LdLs~N~-Lt~LP~~l~--~sL~~LdLs~N~-L~~LP~sl~~~-------- 410 (754)
T PRK15370 348 LQVLDVSKNQITVL---PETL--PPTITTLDVSRNA-LTNLPENLP--AALQIMQASRNN-LVRLPESLPHF-------- 410 (754)
T ss_pred ccEEECCCCCCCcC---Chhh--cCCcCEEECCCCc-CCCCCHhHH--HHHHHHhhccCC-cccCchhHHHH--------
Confidence 88888888876655 6554 3578888888884 445553 22 368888888754 66666543211
Q ss_pred hhhhcccccccCCCCCccceeecccc
Q 001993 870 DQAETASSIIRDTAFPRLETLEFLDM 895 (985)
Q Consensus 870 ~~~~~~~~~~~~~~fp~L~~L~l~~~ 895 (985)
...+|++..|.+.+.
T Consensus 411 -----------~~~~~~l~~L~L~~N 425 (754)
T PRK15370 411 -----------RGEGPQPTRIIVEYN 425 (754)
T ss_pred -----------hhcCCCccEEEeeCC
Confidence 124577788888764
No 27
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.08 E-value=2.2e-09 Score=118.15 Aligned_cols=277 Identities=18% Similarity=0.166 Sum_probs=146.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+|+|++..++.+..++.... .. ......+.|+|++|+||||+|+.+++. ....+ .++... ..
T Consensus 26 ~~vG~~~~~~~l~~~l~~~~----------~~--~~~~~~~ll~GppG~GKT~la~~ia~~--l~~~~---~~~~~~-~~ 87 (328)
T PRK00080 26 EFIGQEKVKENLKIFIEAAK----------KR--GEALDHVLLYGPPGLGKTTLANIIANE--MGVNI---RITSGP-AL 87 (328)
T ss_pred HhcCcHHHHHHHHHHHHHHH----------hc--CCCCCcEEEECCCCccHHHHHHHHHHH--hCCCe---EEEecc-cc
Confidence 79999999999988886422 00 234567889999999999999999983 33221 122211 11
Q ss_pred CHHHHHHHHHHHhcCCCC---CC-CC-HHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcC
Q 001993 259 DDIRIAKAILESLKGSAT---NA-VE-SETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTR 333 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~---~~-~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 333 (985)
.....+..++..+..... ++ .. .....+.+...+.+.+..+|+|+..+... +...+ .+.+-|..|++
T Consensus 88 ~~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~-----~~~~l---~~~~li~at~~ 159 (328)
T PRK00080 88 EKPGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARS-----IRLDL---PPFTLIGATTR 159 (328)
T ss_pred cChHHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccc-----eeecC---CCceEEeecCC
Confidence 112222333333221100 00 00 00111222333334444444444322110 00011 12345666777
Q ss_pred chhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhhhcCCChHH
Q 001993 334 NEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLLRFKGKIEE 413 (985)
Q Consensus 334 ~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~~~ 413 (985)
...+...+...-...+++++++.++..+++.+.+...... . ..+.+..|++.|+|.|-.+..+...+. .
T Consensus 160 ~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~--~---~~~~~~~ia~~~~G~pR~a~~~l~~~~------~ 228 (328)
T PRK00080 160 AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE--I---DEEGALEIARRSRGTPRIANRLLRRVR------D 228 (328)
T ss_pred cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC--c---CHHHHHHHHHHcCCCchHHHHHHHHHH------H
Confidence 5544433211101468999999999999999887654332 1 235688999999999965554444331 1
Q ss_pred HHHHHHhhhhhhh-ccccccchhhhcccCCCCcchhHHHh-hhccCCCCcccChhHHHHHHhhcCcccccCccchhhHhH
Q 001993 414 WQRVLENELWELE-ELDEGLLGPLLLSYLDLPPPLKKCFS-YCAIFPKDSRLEKDKLIRLWMAQDYLKVKGREDMVVGEG 491 (985)
Q Consensus 414 w~~~~~~~~~~~~-~~~~~~~~~l~~sy~~L~~~~k~cfl-~~a~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~ 491 (985)
|...... .... ..-......+...|..|++..+..+. ....|+.+ .+..+.+.... +.+...+++
T Consensus 229 ~a~~~~~--~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l----------g~~~~~~~~ 295 (328)
T PRK00080 229 FAQVKGD--GVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL----------GEERDTIED 295 (328)
T ss_pred HHHHcCC--CCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH----------CCCcchHHH
Confidence 2111100 0000 00012334456778889888777775 66677655 45555543332 222245565
Q ss_pred HHH-HHHhhcccccc
Q 001993 492 YFE-NLAMRSLFQDF 505 (985)
Q Consensus 492 ~~~-~L~~~~ll~~~ 505 (985)
.++ .|++.+|++..
T Consensus 296 ~~e~~Li~~~li~~~ 310 (328)
T PRK00080 296 VYEPYLIQQGFIQRT 310 (328)
T ss_pred HhhHHHHHcCCcccC
Confidence 666 89999999643
No 28
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.05 E-value=2.3e-09 Score=117.29 Aligned_cols=276 Identities=17% Similarity=0.135 Sum_probs=146.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+|+|++..+++|..++.... .. ...+..+.|+|++|+|||+||+.+++. ....+ ..+..+...
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~----------~~--~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~ 67 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAK----------MR--QEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALE 67 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHH----------hc--CCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhc
Confidence 79999999999998886432 00 133456889999999999999999983 32222 112211111
Q ss_pred CHHHHHHHHHHHhcCCC------CCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEc
Q 001993 259 DDIRIAKAILESLKGSA------TNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTT 332 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 332 (985)
.. ..+...+..+.... .+... ......+...+.+.+..+|+|+..... .+. .. ..+..-|..||
T Consensus 68 ~~-~~l~~~l~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~~---~~---~~~~~li~~t~ 137 (305)
T TIGR00635 68 KP-GDLAAILTNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSAR--SVR---LD---LPPFTLVGATT 137 (305)
T ss_pred Cc-hhHHHHHHhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCcccc--cee---ec---CCCeEEEEecC
Confidence 11 11222222222111 00000 112233444444455555555543211 110 11 11244566677
Q ss_pred CchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhhhcCCChH
Q 001993 333 RNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLLRFKGKIE 412 (985)
Q Consensus 333 R~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~~ 412 (985)
+...+...+...-...+++++++.++..+++.+.+...... . ..+....|++.|+|.|-.+..++..+.
T Consensus 138 ~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~--~---~~~al~~ia~~~~G~pR~~~~ll~~~~------ 206 (305)
T TIGR00635 138 RAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVE--I---EPEAALEIARRSRGTPRIANRLLRRVR------ 206 (305)
T ss_pred CccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCC--c---CHHHHHHHHHHhCCCcchHHHHHHHHH------
Confidence 76544433211101467899999999999999887643221 1 134578899999999976655554331
Q ss_pred HHHHHHHhhhhhhh-ccccccchhhhcccCCCCcchhHHHh-hhccCCCCcccChhHHHHHHhhcCcccccCccchhhHh
Q 001993 413 EWQRVLENELWELE-ELDEGLLGPLLLSYLDLPPPLKKCFS-YCAIFPKDSRLEKDKLIRLWMAQDYLKVKGREDMVVGE 490 (985)
Q Consensus 413 ~w~~~~~~~~~~~~-~~~~~~~~~l~~sy~~L~~~~k~cfl-~~a~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~~ 490 (985)
............ +.-......+...|..|+++.+..+. .++.+..+ .+..+.+-... +.+...++
T Consensus 207 --~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l----------g~~~~~~~ 273 (305)
T TIGR00635 207 --DFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL----------GEDADTIE 273 (305)
T ss_pred --HHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh----------CCCcchHH
Confidence 000000000000 00011222256678889998887776 55666533 44444433221 22235566
Q ss_pred HHHH-HHHhhcccccc
Q 001993 491 GYFE-NLAMRSLFQDF 505 (985)
Q Consensus 491 ~~~~-~L~~~~ll~~~ 505 (985)
..++ .|++++|+...
T Consensus 274 ~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 274 DVYEPYLLQIGFLQRT 289 (305)
T ss_pred HhhhHHHHHcCCcccC
Confidence 7678 69999999643
No 29
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.02 E-value=5.8e-08 Score=111.62 Aligned_cols=283 Identities=18% Similarity=0.209 Sum_probs=181.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCC-------------CCC
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE-PFDDIRIAKAILESLKGSAT-------------NAV 279 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~-------------~~~ 279 (985)
.+.+.+.|..++|.|||||+.+.+. ....=..+.|.+..+ .-++..+...++..+..-.+ ...
T Consensus 35 ~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~ 111 (894)
T COG2909 35 NDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYV 111 (894)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccc
Confidence 4789999999999999999998874 112234689999865 45677888888888863221 122
Q ss_pred CHHHHHHHHHHHhc--CceEEEEecCCCCCCcccHHH-HHhhhcCCCCCcEEEEEcCchhhHHhhcCc-ccccccCC---
Q 001993 280 ESETVLKQLRESIE--GKKFFLVLDDVWTEEPQNWEQ-LLGCLRCGSKESRILVTTRNEKVAIAIGTT-KFNIIPIE--- 352 (985)
Q Consensus 280 ~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs~iivTtR~~~v~~~~~~~-~~~~~~l~--- 352 (985)
+...+...+...+. .++..+||||..-........ +.-.+.....+-..|||||...-....... ....+++.
T Consensus 112 ~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~ 191 (894)
T COG2909 112 SLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEE 191 (894)
T ss_pred cHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHh
Confidence 33344444444443 578999999986544334444 444455667788999999987533221110 01233333
Q ss_pred -CCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhhhcCCChHHHHHHHHhhhhhhhccccc
Q 001993 353 -LLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLLRFKGKIEEWQRVLENELWELEELDEG 431 (985)
Q Consensus 353 -~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~~~w~~~~~~~~~~~~~~~~~ 431 (985)
.|+.+|+.++|.......- .+..++.+.+...|-+-|+..++=.++.+.+.+.-...+.. ..+.
T Consensus 192 Lrf~~eE~~~fl~~~~~l~L--------d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG-------~~~~ 256 (894)
T COG2909 192 LRFDTEEAAAFLNDRGSLPL--------DAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSG-------AASH 256 (894)
T ss_pred hcCChHHHHHHHHHcCCCCC--------ChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccc-------hHHH
Confidence 5899999999987653221 12347889999999999999999888844444333332221 1111
Q ss_pred cchh-hhcccCCCCcchhHHHhhhccCCCCcccChhHHHHHHhhcCcccccCccchhhHhHHHHHHHhhccccccccCCC
Q 001993 432 LLGP-LLLSYLDLPPPLKKCFSYCAIFPKDSRLEKDKLIRLWMAQDYLKVKGREDMVVGEGYFENLAMRSLFQDFERSEH 510 (985)
Q Consensus 432 ~~~~-l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~ 510 (985)
+..- ..--++.||+++|..++-||+++.= . ..|+..-.. .+.+...+++|.+++|+-..-++..
T Consensus 257 l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~Ltg-----------~~ng~amLe~L~~~gLFl~~Ldd~~ 321 (894)
T COG2909 257 LSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNALTG-----------EENGQAMLEELERRGLFLQRLDDEG 321 (894)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHHhc-----------CCcHHHHHHHHHhCCCceeeecCCC
Confidence 1111 1234688999999999999999641 1 222222111 1456678999999998865443322
Q ss_pred CCCeEEEEecchHHHHHHHhhccc
Q 001993 511 DGGKIISCQMHDMVHDFSQFLTKT 534 (985)
Q Consensus 511 ~~~~~~~~~mHdlv~d~~~~~~~~ 534 (985)
..|+.|.+..||...-...
T Consensus 322 -----~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 322 -----QWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred -----ceeehhHHHHHHHHhhhcc
Confidence 2489999999998765443
No 30
>PF05729 NACHT: NACHT domain
Probab=98.90 E-value=9e-09 Score=101.63 Aligned_cols=143 Identities=22% Similarity=0.296 Sum_probs=87.5
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhcc----CCceEEEEeCCCCCHH---HHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNH----FNEKIWVCVSEPFDDI---RIAKAILESLKGSATNAVESETVLKQLR 289 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 289 (985)
+++.|+|.+|+||||+++.++........ +...+|++.++..... .+...|..+..... ..... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HHH
Confidence 47999999999999999999985322222 3456677665543332 33333333332211 11111 122
Q ss_pred HHh-cCceEEEEecCCCCCCcc-------cHHHHH-hhhcC-CCCCcEEEEEcCchhhHHh---hcCcccccccCCCCCh
Q 001993 290 ESI-EGKKFFLVLDDVWTEEPQ-------NWEQLL-GCLRC-GSKESRILVTTRNEKVAIA---IGTTKFNIIPIELLSD 356 (985)
Q Consensus 290 ~~l-~~k~~LlVlDdv~~~~~~-------~~~~l~-~~l~~-~~~gs~iivTtR~~~v~~~---~~~~~~~~~~l~~L~~ 356 (985)
..+ +.++++||+|++++.... .+..+. ..++. ...+.++|||+|....... .... ..+.+.+|++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~--~~~~l~~~~~ 152 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQA--QILELEPFSE 152 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCC--cEEEECCCCH
Confidence 222 578999999999653321 123323 33332 3568899999998776332 2222 5799999999
Q ss_pred HHHHHHHHHHh
Q 001993 357 EDCWSIFSQLA 367 (985)
Q Consensus 357 ~e~~~Lf~~~~ 367 (985)
++..+++++..
T Consensus 153 ~~~~~~~~~~f 163 (166)
T PF05729_consen 153 EDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999997753
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.85 E-value=1.5e-10 Score=120.32 Aligned_cols=261 Identities=21% Similarity=0.179 Sum_probs=155.5
Q ss_pred CceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCC-CcccccCCCCCeEecCCCCCccccch-hhcCCCCCcE
Q 001993 578 KLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQI-PKGIKKLIHLRYLALGENPWIKELPE-ALCELCNLQT 653 (985)
Q Consensus 578 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~l-p~~i~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~ 653 (985)
....+.+..|. +..+.+..|+.++.||.|||+ .+..+ |+.|..|..|-.|-+-+++.|+++|. .++.|..|+-
T Consensus 68 ~tveirLdqN~---I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 68 ETVEIRLDQNQ---ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred cceEEEeccCC---cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 44566677665 355667788999999999998 56666 77788888877776666444999997 4788999999
Q ss_pred eeccCcccccccchhhhhccccceeecccccccccccCCC-cCCCCCCCCccCceEecCCCcccccCCchhhhccccCcc
Q 001993 654 LDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPR-GMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEG 732 (985)
Q Consensus 654 L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 732 (985)
|.+.-|+.-......+..|++|..|.+..|.. ..++. .+..+.+++++.+..+.... .| .+..+...-..-
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~---q~i~~~tf~~l~~i~tlhlA~np~ic---dC-nL~wla~~~a~~- 216 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKI---QSICKGTFQGLAAIKTLHLAQNPFIC---DC-NLPWLADDLAMN- 216 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhh---hhhccccccchhccchHhhhcCcccc---cc-ccchhhhHHhhc-
Confidence 99998884444556778899999998876543 55665 47788888888776544332 22 222222110000
Q ss_pred eeeecccccccCCCCcchhhhcccccc---cccccE--EEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCC
Q 001993 733 SLTLRGLGNERDLGDDNDDEKVDLKSK---MKLVDL--HLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPT 807 (985)
Q Consensus 733 ~L~i~~l~~~~~~~~~~~~~~~~l~~~---~~L~~L--~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 807 (985)
.....+..-+.... ............ .+++++ .+.... ..+...--..+..+++|++|++++|....+.
T Consensus 217 ~ietsgarc~~p~r-l~~~Ri~q~~a~kf~c~~esl~s~~~~~d---~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~-- 290 (498)
T KOG4237|consen 217 PIETSGARCVSPYR-LYYKRINQEDARKFLCSLESLPSRLSSED---FPDSICPAKCFKKLPNLRKLNLSNNKITRIE-- 290 (498)
T ss_pred hhhcccceecchHH-HHHHHhcccchhhhhhhHHhHHHhhcccc---CcCCcChHHHHhhcccceEeccCCCccchhh--
Confidence 00000100000000 000000000000 011111 011000 0000111123566789999999999887775
Q ss_pred ChhhhccccccEEeEeccCCCCcCC--CCCCCCccceeeccCCCCceEeCCc
Q 001993 808 SDWMLSLAKLRVLTLRFCNECECLP--PLGKLPCLETLVLEGMSSVKRLGNG 857 (985)
Q Consensus 808 p~~~~~l~~L~~L~L~~~~~~~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~ 857 (985)
+.|+..+..++.|.|..|+ ++.+. .+.++..|+.|+|.++. ++.+..+
T Consensus 291 ~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~-it~~~~~ 340 (498)
T KOG4237|consen 291 DGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQ-ITTVAPG 340 (498)
T ss_pred hhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCe-eEEEecc
Confidence 7788888999999998884 44444 36788889999998844 6666443
No 32
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.81 E-value=6.6e-08 Score=102.08 Aligned_cols=176 Identities=19% Similarity=0.265 Sum_probs=108.2
Q ss_pred ccccCCceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEE
Q 001993 173 FLDESYEIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWV 252 (985)
Q Consensus 173 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv 252 (985)
++.+. .++|....+.++++ .+.+....+||++|+||||||+.++. .....|.
T Consensus 26 ~vGQ~-HLlg~~~~lrr~v~--------------------~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~----- 77 (436)
T COG2256 26 VVGQE-HLLGEGKPLRRAVE--------------------AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAFE----- 77 (436)
T ss_pred hcChH-hhhCCCchHHHHHh--------------------cCCCceeEEECCCCCCHHHHHHHHHH--hhCCceE-----
Confidence 34444 66777666665554 35677889999999999999999998 4444442
Q ss_pred EeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH-HHhcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEE-
Q 001993 253 CVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLR-ESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILV- 330 (985)
Q Consensus 253 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv- 330 (985)
.++...+-.+-++. +.+.-+ ....|++.+|++|.|+..+..+.+.+++.+. +|.-|+|
T Consensus 78 ~~sAv~~gvkdlr~-----------------i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIG 137 (436)
T COG2256 78 ALSAVTSGVKDLRE-----------------IIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIG 137 (436)
T ss_pred EeccccccHHHHHH-----------------HHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEe
Confidence 23332222222222 222222 2235899999999999877666666665554 4665665
Q ss_pred -EcCchhhHH---hhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcc--cchhHHHHHHHHHHhcCCChhHH
Q 001993 331 -TTRNEKVAI---AIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIE--ESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 331 -TtR~~~v~~---~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~--~~~~~~~~~~~i~~~c~GlPLai 398 (985)
||.++...- ...- ..++.+++|+.++..+++.+.+........ ...-.+++...+++.++|---+.
T Consensus 138 ATTENPsF~ln~ALlSR--~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 138 ATTENPSFELNPALLSR--ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred ccCCCCCeeecHHHhhh--hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 455553211 1111 278999999999999999884433222111 01112346677888888876543
No 33
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.80 E-value=2.6e-10 Score=118.52 Aligned_cols=117 Identities=25% Similarity=0.365 Sum_probs=77.2
Q ss_pred eecCCCCCCCCc-ccccCCCCCeEecCCCCCcccc-chhhcCCCCCcEeeccCcccccccchh-hhhccccceeeccccc
Q 001993 608 SIDGLPVGQIPK-GIKKLIHLRYLALGENPWIKEL-PEALCELCNLQTLDVSLCHYLKRLPER-IGQLINLRHLMNSKEE 684 (985)
Q Consensus 608 ~L~l~~~~~lp~-~i~~l~~Lr~L~L~~~~~i~~l-P~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~n~ 684 (985)
.|+-..+..+|+ .|+.+++||.|||++|. |..+ |..|..|.+|-.|-+.+++.++.+|++ ++.|..|+.|.+.-|.
T Consensus 73 rLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~ 151 (498)
T KOG4237|consen 73 RLDQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH 151 (498)
T ss_pred EeccCCcccCChhhccchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh
Confidence 344447788865 47788888888888887 6665 667888888888877775558888864 5778888888777554
Q ss_pred ccccccCC-CcCCCCCCCCccCceEecCCCcccccCCchhhhccccC
Q 001993 685 WSRLSYMP-RGMERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHL 730 (985)
Q Consensus 685 ~~~l~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L 730 (985)
| ..++ ..+..|++|..|.++.+.......+ .+..+..++.+
T Consensus 152 i---~Cir~~al~dL~~l~lLslyDn~~q~i~~~--tf~~l~~i~tl 193 (498)
T KOG4237|consen 152 I---NCIRQDALRDLPSLSLLSLYDNKIQSICKG--TFQGLAAIKTL 193 (498)
T ss_pred h---cchhHHHHHHhhhcchhcccchhhhhhccc--cccchhccchH
Confidence 4 3333 3366777777777776544432222 34455544433
No 34
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.79 E-value=2.4e-10 Score=119.91 Aligned_cols=167 Identities=19% Similarity=0.196 Sum_probs=110.2
Q ss_pred CCCCCCCeEEEeeccCCCCCCCChh-hh-ccccccEEeEeccCCCCcCC--CCC-CCCccceeeccCCCCceEeCCcccC
Q 001993 786 QPPSSLEKLGIYGYAGDTISPTSDW-ML-SLAKLRVLTLRFCNECECLP--PLG-KLPCLETLVLEGMSSVKRLGNGFLG 860 (985)
Q Consensus 786 ~~~~~L~~L~l~~~~~~~~~~~p~~-~~-~l~~L~~L~L~~~~~~~~l~--~l~-~l~~L~~L~L~~~~~l~~l~~~~~~ 860 (985)
..+..|+.|+.+++...... +-| ++ ..++|+.|.++.|..+++.- .++ +.+.|+.+++.+|..+..- .+..
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~--~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~s 366 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDE--VLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLAS 366 (483)
T ss_pred hhhhHhhhhcccCCCCCchH--HHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhh
Confidence 34567788887776542211 212 22 56888888888887655432 333 6788888888887632211 1111
Q ss_pred CchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeecccccCCCC-CCCCCCCCC
Q 001993 861 IAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKAL-PDYILGSTS 939 (985)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~l-p~~~~~l~~ 939 (985)
. ...+|.|+.|.++.|..+++-..........++..|+.|.+.+||.++.- -+.+.++++
T Consensus 367 l-------------------s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~ 427 (483)
T KOG4341|consen 367 L-------------------SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN 427 (483)
T ss_pred h-------------------ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence 1 25789999999999877665522122224567899999999999988753 345678899
Q ss_pred cCeEEecCchhhhhhhcCCCCCCCCCcCCcCceeec-----CCCCCC
Q 001993 940 LDKLLIYYSRHLNNRYNMETGPEWPKISHVPNISFT-----LHGPAA 981 (985)
Q Consensus 940 L~~L~i~~c~~l~~~~~~~~~~~~~~i~h~p~~~~~-----~~~~~~ 981 (985)
|+.+++.+|..++..-.. .-..|.|++.+. +.||++
T Consensus 428 Leri~l~~~q~vtk~~i~------~~~~~lp~i~v~a~~a~~t~p~~ 468 (483)
T KOG4341|consen 428 LERIELIDCQDVTKEAIS------RFATHLPNIKVHAYFAPVTPPGF 468 (483)
T ss_pred cceeeeechhhhhhhhhH------HHHhhCccceehhhccCCCCccc
Confidence 999999999987654222 124789999874 666664
No 35
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.78 E-value=1.9e-07 Score=108.17 Aligned_cols=214 Identities=14% Similarity=0.142 Sum_probs=128.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhh---hccCC--ceEEEE
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEV---RNHFN--EKIWVC 253 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~f~--~~~wv~ 253 (985)
.+.|||+|+++|...|...-. . .....++.|+|++|.|||+.++.|...-+. +...+ .+++|+
T Consensus 756 ~LPhREeEIeeLasfL~paIk----------g--sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN 823 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIK----------Q--SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN 823 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHh----------c--CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe
Confidence 699999999999999875431 0 123357889999999999999999874211 11222 256788
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHHHhc---CceEEEEecCCCCCCcccHHHHHhhhcC-CCCCcEE
Q 001993 254 VSEPFDDIRIAKAILESLKGSAT-NAVESETVLKQLRESIE---GKKFFLVLDDVWTEEPQNWEQLLGCLRC-GSKESRI 328 (985)
Q Consensus 254 ~s~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~i 328 (985)
+....+...++..|.+++.+... .......+...+...+. +...+||||+++......-+.|...+.+ ...+++|
T Consensus 824 Cm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKL 903 (1164)
T PTZ00112 824 GMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKL 903 (1164)
T ss_pred CCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeE
Confidence 87778888999999999954432 22333344445554442 2346999999964332122234433332 2245555
Q ss_pred EE--EcCchhhHH----hhcC-cccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHH
Q 001993 329 LV--TTRNEKVAI----AIGT-TKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTL 401 (985)
Q Consensus 329 iv--TtR~~~v~~----~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 401 (985)
+| .|...+... .+.. .....+...|++.++..+++..++..... .-.+..++-+|+.++...|-.-.||.++
T Consensus 904 iLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~g-VLdDdAIELIArkVAq~SGDARKALDIL 982 (1164)
T PTZ00112 904 VLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKE-IIDHTAIQLCARKVANVSGDIRKALQIC 982 (1164)
T ss_pred EEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCC-CCCHHHHHHHHHhhhhcCCHHHHHHHHH
Confidence 54 333222111 1111 11134777999999999999998764211 1233444555555555555566677666
Q ss_pred Hhhh
Q 001993 402 GSLL 405 (985)
Q Consensus 402 ~~~L 405 (985)
-.+.
T Consensus 983 RrAg 986 (1164)
T PTZ00112 983 RKAF 986 (1164)
T ss_pred HHHH
Confidence 5554
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.76 E-value=4e-10 Score=124.63 Aligned_cols=83 Identities=23% Similarity=0.255 Sum_probs=40.2
Q ss_pred HhhccCCcceeecCCCCC-------CCCcccccCCCCCeEecCCCCCcc-------ccchhhcCCCCCcEeeccCccccc
Q 001993 598 KLFDRLTCLRSIDGLPVG-------QIPKGIKKLIHLRYLALGENPWIK-------ELPEALCELCNLQTLDVSLCHYLK 663 (985)
Q Consensus 598 ~~~~~l~~Lr~L~l~~~~-------~lp~~i~~l~~Lr~L~L~~~~~i~-------~lP~~i~~L~~L~~L~l~~~~~l~ 663 (985)
..|..+..|+.|+++... .++..+...+.|++|+++++. +. .++..+.++++|+.|++++|....
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 344555556666665222 234444455556666665554 32 123344455556666665555222
Q ss_pred ccchhhhhccc---cceeecc
Q 001993 664 RLPERIGQLIN---LRHLMNS 681 (985)
Q Consensus 664 ~lP~~i~~L~~---L~~L~l~ 681 (985)
..+..+..+.+ |++|+++
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls 116 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLN 116 (319)
T ss_pred hHHHHHHHHhccCcccEEEee
Confidence 33334444443 5555555
No 37
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.74 E-value=1.7e-07 Score=106.37 Aligned_cols=179 Identities=20% Similarity=0.267 Sum_probs=106.1
Q ss_pred ceecchhhHHH---HHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeC
Q 001993 179 EIRGRNHLQNK---VASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVS 255 (985)
Q Consensus 179 ~~vGr~~~~~~---l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 255 (985)
++||++..+.. +..++.. .....+.|+|++|+||||+|+.+++. .... |+.++
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~-----------------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~ 68 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEA-----------------GRLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALS 68 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHc-----------------CCCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEe
Confidence 57888776555 6666652 34457888999999999999999873 3222 23322
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEE--Ec
Q 001993 256 EPFDDIRIAKAILESLKGSATNAVESETVLKQLRES-IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILV--TT 332 (985)
Q Consensus 256 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--Tt 332 (985)
....-....+.++ ...... ..+++.+|++|+++.......+.+...+.. |..++| ||
T Consensus 69 a~~~~~~~ir~ii-----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att 128 (413)
T PRK13342 69 AVTSGVKDLREVI-----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATT 128 (413)
T ss_pred cccccHHHHHHHH-----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCC
Confidence 2111111112222 222111 246788999999987766666667666653 444444 34
Q ss_pred Cchh--hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhh
Q 001993 333 RNEK--VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSL 404 (985)
Q Consensus 333 R~~~--v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 404 (985)
.+.. +...+.. ....+.+.+++.++...++.+........ . ..-..+....|++.|+|.+..+..+...
T Consensus 129 ~n~~~~l~~aL~S-R~~~~~~~~ls~e~i~~lL~~~l~~~~~~-~-i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 129 ENPSFEVNPALLS-RAQVFELKPLSEEDIEQLLKRALEDKERG-L-VELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred CChhhhccHHHhc-cceeeEeCCCCHHHHHHHHHHHHHHhhcC-C-CCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4332 1111111 12578999999999999998865331110 0 0122456788999999999766544433
No 38
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.73 E-value=1.6e-07 Score=114.58 Aligned_cols=316 Identities=16% Similarity=0.182 Sum_probs=181.4
Q ss_pred eecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceE---EEEeCC
Q 001993 180 IRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKI---WVCVSE 256 (985)
Q Consensus 180 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~---wv~~s~ 256 (985)
++||+.+.+.|...+.... .+...++.+.|..|||||+|+++|.. .+.+.+...+ +-....
T Consensus 2 l~GRe~ev~~Ll~~f~~v~--------------~g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~ 65 (849)
T COG3899 2 LYGRETELAQLLAAFDRVS--------------KGRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFER 65 (849)
T ss_pred CCchHhHHHHHHHHHHHHh--------------CCCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccC
Confidence 6899999999999998665 35567999999999999999999987 4433322111 111111
Q ss_pred CC---CHHHHHHHHHHHhcCCCC--------------------------------C---------CCCHHH-----HHHH
Q 001993 257 PF---DDIRIAKAILESLKGSAT--------------------------------N---------AVESET-----VLKQ 287 (985)
Q Consensus 257 ~~---~~~~~~~~i~~~l~~~~~--------------------------------~---------~~~~~~-----~~~~ 287 (985)
.. .....+++++.++..... . ...... ....
T Consensus 66 ~ipl~~lvq~~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~ 145 (849)
T COG3899 66 NIPLSPLVQAFRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRF 145 (849)
T ss_pred CCchHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHH
Confidence 11 122344444444421100 0 000000 1111
Q ss_pred HHHHh-cCceEEEEecCCCCCCcccHHHHHhhhcCCC------CCcEEEEEcCchhhHHhhcCcccccccCCCCChHHHH
Q 001993 288 LRESI-EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS------KESRILVTTRNEKVAIAIGTTKFNIIPIELLSDEDCW 360 (985)
Q Consensus 288 l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------~gs~iivTtR~~~v~~~~~~~~~~~~~l~~L~~~e~~ 360 (985)
+.... +.++.++|+||+.+.|....+-+........ +..-.+.|.+...-....+......+.|.||+..+..
T Consensus 146 i~~~~~~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~ 225 (849)
T COG3899 146 IQVFTAEEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTN 225 (849)
T ss_pred HHHHHhccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHH
Confidence 12222 3569999999997776655555443333221 1112233333332222222333478999999999999
Q ss_pred HHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhhhcC------CChHHHHHHHHhhhhhhhccccccch
Q 001993 361 SIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLLRFK------GKIEEWQRVLENELWELEELDEGLLG 434 (985)
Q Consensus 361 ~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~------~~~~~w~~~~~~~~~~~~~~~~~~~~ 434 (985)
.+......... ....+....|+++..|.|+.+..+-..+... .+...|..-... ....... +.+..
T Consensus 226 ~lV~~~l~~~~------~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~~~-~~vv~ 297 (849)
T COG3899 226 QLVAATLGCTK------LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILATT-DAVVE 297 (849)
T ss_pred HHHHHHhCCcc------cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCchhh-HHHHH
Confidence 99988764421 2234668899999999999999999988654 233344322111 1111111 22455
Q ss_pred hhhcccCCCCcchhHHHhhhccCCCCcccChhHHHHHHhhcCcccccCccchhhHhHHHHHHHhhccccccccCCCCCCe
Q 001993 435 PLLLSYLDLPPPLKKCFSYCAIFPKDSRLEKDKLIRLWMAQDYLKVKGREDMVVGEGYFENLAMRSLFQDFERSEHDGGK 514 (985)
Q Consensus 435 ~l~~sy~~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~ 514 (985)
.+..-.+.||...+..+...|++- -.|+.+.|-..|-. .....+...++.|....++-..+.... +..
T Consensus 298 ~l~~rl~kL~~~t~~Vl~~AA~iG--~~F~l~~La~l~~~---------~~~~~a~~l~~al~e~lI~~~~~~yr~-~~~ 365 (849)
T COG3899 298 FLAARLQKLPGTTREVLKAAACIG--NRFDLDTLAALAED---------SPALEAAALLDALQEGLILPLSETYRF-GSN 365 (849)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--ccCCHHHHHHHHhh---------chHHHHHHHHHHhHhhceecccccccc-ccc
Confidence 677888999999999999999995 45566666655522 111455555555655555432211111 111
Q ss_pred EEEE---ecchHHHHHHHhh
Q 001993 515 IISC---QMHDMVHDFSQFL 531 (985)
Q Consensus 515 ~~~~---~mHdlv~d~~~~~ 531 (985)
.... ..||.+++.+-..
T Consensus 366 ~~~~~Y~F~H~~vqqaaY~~ 385 (849)
T COG3899 366 VDIATYKFLHDRVQQAAYNL 385 (849)
T ss_pred cchhhHHhhHHHHHHHHhcc
Confidence 1112 4688888876543
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.73 E-value=6.7e-10 Score=120.67 Aligned_cols=125 Identities=33% Similarity=0.391 Sum_probs=97.1
Q ss_pred cCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCC
Q 001993 574 YDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNL 651 (985)
Q Consensus 574 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L 651 (985)
..+..-...+++.|.+.. +|.-+..|-.|..|.+. .+..+|..+++|..|.||+|+.|. +..+|..+|.|+ |
T Consensus 72 ~~ltdt~~aDlsrNR~~e----lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-L 145 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSE----LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-L 145 (722)
T ss_pred ccccchhhhhcccccccc----CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-c
Confidence 334444555666665422 33345555666666665 677889999999999999999998 999999999887 9
Q ss_pred cEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCceE
Q 001993 652 QTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFV 708 (985)
Q Consensus 652 ~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~ 708 (985)
+.|.+++|+ +..+|..|+.+..|.+|+.+ ++.+..+|..++.+.+|+.|.+..
T Consensus 146 kvli~sNNk-l~~lp~~ig~~~tl~~ld~s---~nei~slpsql~~l~slr~l~vrR 198 (722)
T KOG0532|consen 146 KVLIVSNNK-LTSLPEEIGLLPTLAHLDVS---KNEIQSLPSQLGYLTSLRDLNVRR 198 (722)
T ss_pred eeEEEecCc-cccCCcccccchhHHHhhhh---hhhhhhchHHhhhHHHHHHHHHhh
Confidence 999999888 99999999999999999998 335578888888888888876653
No 40
>PRK06893 DNA replication initiation factor; Validated
Probab=98.71 E-value=1.3e-07 Score=98.07 Aligned_cols=155 Identities=17% Similarity=0.222 Sum_probs=97.7
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
+.+.|+|++|+|||+|++.+++. .......+.|+++... ..... .+.+.+. +.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~---------------------~~~~~~~-~~ 92 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSP---------------------AVLENLE-QQ 92 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhH---------------------HHHhhcc-cC
Confidence 57899999999999999999984 3333445677765321 00000 1111122 33
Q ss_pred EEEEecCCCCCC-cccHHH-HHhhhcCC-CCCcEEEE-EcCc---------hhhHHhhcCcccccccCCCCChHHHHHHH
Q 001993 297 FFLVLDDVWTEE-PQNWEQ-LLGCLRCG-SKESRILV-TTRN---------EKVAIAIGTTKFNIIPIELLSDEDCWSIF 363 (985)
Q Consensus 297 ~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~iiv-TtR~---------~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf 363 (985)
-+||+||+|... ...|+. +...+... ..|..+|| |+.. +.+...+... ..++++++++++.++++
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g--~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG--EIYQLNDLTDEQKIIVL 170 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC--CeeeCCCCCHHHHHHHH
Confidence 589999998642 345553 44434322 23555654 4443 3455555544 68899999999999999
Q ss_pred HHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhh
Q 001993 364 SQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLL 405 (985)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L 405 (985)
++.+...... .+ +++..-|++++.|..-.+..+-..|
T Consensus 171 ~~~a~~~~l~--l~---~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 171 QRNAYQRGIE--LS---DEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHcCCC--CC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 9988755432 22 3567889999988877666555444
No 41
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.70 E-value=3.7e-09 Score=116.89 Aligned_cols=243 Identities=19% Similarity=0.158 Sum_probs=141.8
Q ss_pred CccccCCCCceEEEccCcCCcch-hhhHHHhhccCCcceeecCCC--CC-------CCCcccccCCCCCeEecCCCCCcc
Q 001993 570 PSMVYDETKLRSLVLDQRLSFKP-RIALSKLFDRLTCLRSIDGLP--VG-------QIPKGIKKLIHLRYLALGENPWIK 639 (985)
Q Consensus 570 ~~~~~~~~~Lr~L~l~~~~~~~~-~~~~~~~~~~l~~Lr~L~l~~--~~-------~lp~~i~~l~~Lr~L~L~~~~~i~ 639 (985)
...+..+..|+.|.+.++..... ...++..+...+.|+.|+++. +. .++..+..+.+|++|++++|....
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 34445566788999888763211 122455567777888888872 22 123456778899999999998333
Q ss_pred ccchhhcCCCC---CcEeeccCccccc-----ccchhhhhc-cccceeecccccccc--cccCCCcCCCCCCCCccCceE
Q 001993 640 ELPEALCELCN---LQTLDVSLCHYLK-----RLPERIGQL-INLRHLMNSKEEWSR--LSYMPRGMERLTGLRTLGAFV 708 (985)
Q Consensus 640 ~lP~~i~~L~~---L~~L~l~~~~~l~-----~lP~~i~~L-~~L~~L~l~~n~~~~--l~~~p~~i~~L~~L~~L~~~~ 708 (985)
..+..+..+.+ |+.|++++|. +. .++..+..+ ++|+.|++++|..+. ...++..+..+++|++|++..
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN 174 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence 55666666665 9999999987 43 233455666 899999999654431 112333445556666665543
Q ss_pred ecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCC
Q 001993 709 ASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPP 788 (985)
Q Consensus 709 ~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~ 788 (985)
+..... .+.. ....+...++|+.|+++.+... ......+...+..+
T Consensus 175 n~l~~~-----~~~~----------------------------l~~~l~~~~~L~~L~L~~n~i~-~~~~~~l~~~~~~~ 220 (319)
T cd00116 175 NGIGDA-----GIRA----------------------------LAEGLKANCNLEVLDLNNNGLT-DEGASALAETLASL 220 (319)
T ss_pred CCCchH-----HHHH----------------------------HHHHHHhCCCCCEEeccCCccC-hHHHHHHHHHhccc
Confidence 221110 0000 0011222346666666655411 11122344455667
Q ss_pred CCCCeEEEeeccCCCCCCCChhhh-c----cccccEEeEeccCCCC----cC-CCCCCCCccceeeccCCC
Q 001993 789 SSLEKLGIYGYAGDTISPTSDWML-S----LAKLRVLTLRFCNECE----CL-PPLGKLPCLETLVLEGMS 849 (985)
Q Consensus 789 ~~L~~L~l~~~~~~~~~~~p~~~~-~----l~~L~~L~L~~~~~~~----~l-~~l~~l~~L~~L~L~~~~ 849 (985)
++|+.|++++|...... +..+. . .+.|++|++++|.... .+ ..+..+++|++|+++++.
T Consensus 221 ~~L~~L~ls~n~l~~~~--~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 221 KSLEVLNLGDNNLTDAG--AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred CCCCEEecCCCcCchHH--HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 88999999887654311 12222 2 3789999999885321 11 134556889999998854
No 42
>PTZ00202 tuzin; Provisional
Probab=98.63 E-value=6.6e-06 Score=88.81 Aligned_cols=163 Identities=17% Similarity=0.260 Sum_probs=100.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.|+||+.++.+|...|...+ ...++++.|+|++|+|||||++.+.... . + ..++++..
T Consensus 263 ~FVGReaEla~Lr~VL~~~d--------------~~~privvLtG~~G~GKTTLlR~~~~~l--~--~-~qL~vNpr--- 320 (550)
T PTZ00202 263 QFVSREAEESWVRQVLRRLD--------------TAHPRIVVFTGFRGCGKSSLCRSAVRKE--G--M-PAVFVDVR--- 320 (550)
T ss_pred CCCCcHHHHHHHHHHHhccC--------------CCCceEEEEECCCCCCHHHHHHHHHhcC--C--c-eEEEECCC---
Confidence 89999999999999987544 2345699999999999999999998632 1 1 12233322
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-----c-CceEEEEecCCCCCCc-ccHHHHHhhhcCCCCCcEEEEE
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESI-----E-GKKFFLVLDDVWTEEP-QNWEQLLGCLRCGSKESRILVT 331 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~-~k~~LlVlDdv~~~~~-~~~~~l~~~l~~~~~gs~iivT 331 (985)
+..++++.|+.+|+.... ....++...|.+.+ . +++.+||+-==...+. ..+++. ..+.+...-++|++-
T Consensus 321 g~eElLr~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~e 397 (550)
T PTZ00202 321 GTEDTLRSVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIE 397 (550)
T ss_pred CHHHHHHHHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeee
Confidence 679999999999986432 22234444444433 2 6777777643211111 112221 233344455677765
Q ss_pred cCchhhHHhhcC-cccccccCCCCChHHHHHHHHHH
Q 001993 332 TRNEKVAIAIGT-TKFNIIPIELLSDEDCWSIFSQL 366 (985)
Q Consensus 332 tR~~~v~~~~~~-~~~~~~~l~~L~~~e~~~Lf~~~ 366 (985)
---+.+...... ..-.-|-+.+++.++|.++..+.
T Consensus 398 vpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 398 VPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred ehHhhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 544333211111 11246788999999998877664
No 43
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.63 E-value=7.6e-08 Score=90.71 Aligned_cols=118 Identities=21% Similarity=0.264 Sum_probs=81.9
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhh---ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVR---NHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRES 291 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 291 (985)
+.+++.|+|.+|+|||++++.++++.... ..-..++|+.+....+...+...|+..++.......+.+++...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34689999999999999999999842111 013457799998888999999999999987766656777788888888
Q ss_pred hcCc-eEEEEecCCCCC-CcccHHHHHhhhcCCCCCcEEEEEcCc
Q 001993 292 IEGK-KFFLVLDDVWTE-EPQNWEQLLGCLRCGSKESRILVTTRN 334 (985)
Q Consensus 292 l~~k-~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~ 334 (985)
+... ..+||+|++..- ....++.+..... ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 8654 469999999654 4344444544333 566778877665
No 44
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=9.9e-07 Score=101.09 Aligned_cols=193 Identities=19% Similarity=0.242 Sum_probs=115.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.+...+.|..++..+. -...+.++|+.|+||||+|+.+++. +... -++.. ..+
T Consensus 16 dVIGQe~vv~~L~~aI~~gr----------------l~HAyLF~GPpGvGKTTlAriLAK~--LnC~----~~~~~-~pC 72 (702)
T PRK14960 16 ELVGQNHVSRALSSALERGR----------------LHHAYLFTGTRGVGKTTIARILAKC--LNCE----TGVTS-TPC 72 (702)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHH--hCCC----cCCCC-CCC
Confidence 78999999999999997432 3468899999999999999998763 2110 01100 000
Q ss_pred CHHHHHHHHHHHhc-----CCCCCCCCHHHHHHHHHH----HhcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEE
Q 001993 259 DDIRIAKAILESLK-----GSATNAVESETVLKQLRE----SIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRIL 329 (985)
Q Consensus 259 ~~~~~~~~i~~~l~-----~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 329 (985)
..-...+.|...-. .........+++...+.. -..++.-++|+|+|+......++.++..+.....+.++|
T Consensus 73 g~C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FI 152 (702)
T PRK14960 73 EVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFL 152 (702)
T ss_pred ccCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEE
Confidence 00011111110000 000011122222222111 123567799999998777677888888887666677788
Q ss_pred EEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHH
Q 001993 330 VTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKT 400 (985)
Q Consensus 330 vTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 400 (985)
++|.+.. +..... .....+++++++.++....+.+.+...+.. ...+....|++.++|.+-.+..
T Consensus 153 LaTtd~~kIp~TIl-SRCq~feFkpLs~eEI~k~L~~Il~kEgI~-----id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 153 FATTDPQKLPITVI-SRCLQFTLRPLAVDEITKHLGAILEKEQIA-----ADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred EEECChHhhhHHHH-HhhheeeccCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHH
Confidence 7776532 221111 223689999999999999888776544321 1234578899999998755443
No 45
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=1.5e-06 Score=96.66 Aligned_cols=191 Identities=19% Similarity=0.293 Sum_probs=111.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|-+..++.+.+.+..+. -...+.++|+.|+||||+|+.++..-.-...+. ..+.
T Consensus 17 ~iiGq~~~~~~l~~~~~~~~----------------~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc 73 (363)
T PRK14961 17 DIIGQKHIVTAISNGLSLGR----------------IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPC 73 (363)
T ss_pred hccChHHHHHHHHHHHHcCC----------------CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCC
Confidence 78999999999998887332 345789999999999999999987311000000 0000
Q ss_pred CHHHHHHHHHHHhc-----CCCCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEE
Q 001993 259 DDIRIAKAILESLK-----GSATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRI 328 (985)
Q Consensus 259 ~~~~~~~~i~~~l~-----~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 328 (985)
..-.....+..... .........++.. .+.+.+ .+++-++|+|++.......++.++..+.......++
T Consensus 74 ~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir-~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~f 152 (363)
T PRK14961 74 RKCIICKEIEKGLCLDLIEIDAASRTKVEEMR-EILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKF 152 (363)
T ss_pred CCCHHHHHHhcCCCCceEEecccccCCHHHHH-HHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 00000111100000 0000011122221 122221 245669999999876666788888888766667777
Q ss_pred EEEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHH
Q 001993 329 LVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVK 399 (985)
Q Consensus 329 ivTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 399 (985)
|++|.+.. +...+.. ....+++.+++.++..+.+.+.+...+.. -..+.+..|++.++|.|-.+.
T Consensus 153 Il~t~~~~~l~~tI~S-Rc~~~~~~~l~~~el~~~L~~~~~~~g~~-----i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 153 ILATTDVEKIPKTILS-RCLQFKLKIISEEKIFNFLKYILIKESID-----TDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred EEEcCChHhhhHHHHh-hceEEeCCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHH
Confidence 77765432 3222211 12689999999999998888765433211 113457789999999886443
No 46
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.59 E-value=1e-06 Score=101.92 Aligned_cols=179 Identities=13% Similarity=0.222 Sum_probs=115.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhh---------------
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVR--------------- 243 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------------- 243 (985)
+++|.+..++.|.+++..+. -...+.++|..|+||||+|+.+.+.-.-.
T Consensus 17 EVIGQe~Vv~~L~~aL~~gR----------------L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr 80 (830)
T PRK07003 17 SLVGQEHVVRALTHALDGGR----------------LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80 (830)
T ss_pred HHcCcHHHHHHHHHHHhcCC----------------CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHH
Confidence 78999999999999987332 34567899999999999999887631100
Q ss_pred ----ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hcCceEEEEecCCCCCCcccHHHH
Q 001993 244 ----NHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRES----IEGKKFFLVLDDVWTEEPQNWEQL 315 (985)
Q Consensus 244 ----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l 315 (985)
+.|..+++++.++. ...+++...+... ..++.-++|||+++......|+.+
T Consensus 81 ~I~~G~h~DviEIDAas~---------------------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NAL 139 (830)
T PRK07003 81 EIDEGRFVDYVEMDAASN---------------------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAM 139 (830)
T ss_pred HHhcCCCceEEEeccccc---------------------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHH
Confidence 11112222222111 1122222222211 134556899999988777788999
Q ss_pred HhhhcCCCCCcEEEEEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCC
Q 001993 316 LGCLRCGSKESRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGL 394 (985)
Q Consensus 316 ~~~l~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 394 (985)
+..+.......++|+||.+.. +...+ ......+++++++.++..+.+.+.+...+.. ...+....|++.++|.
T Consensus 140 LKtLEEPP~~v~FILaTtd~~KIp~TI-rSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~-----id~eAL~lIA~~A~Gs 213 (830)
T PRK07003 140 LKTLEEPPPHVKFILATTDPQKIPVTV-LSRCLQFNLKQMPAGHIVSHLERILGEERIA-----FEPQALRLLARAAQGS 213 (830)
T ss_pred HHHHHhcCCCeEEEEEECChhhccchh-hhheEEEecCCcCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCC
Confidence 998877666778888877644 21111 1123689999999999999998876543321 1235578899999986
Q ss_pred hh-HHHH
Q 001993 395 PL-AVKT 400 (985)
Q Consensus 395 PL-ai~~ 400 (985)
.- |+..
T Consensus 214 mRdALsL 220 (830)
T PRK07003 214 MRDALSL 220 (830)
T ss_pred HHHHHHH
Confidence 64 4444
No 47
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=9.7e-07 Score=104.29 Aligned_cols=181 Identities=16% Similarity=0.246 Sum_probs=114.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhcc-------------
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNH------------- 245 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------------- 245 (985)
+++|-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++. +...
T Consensus 17 dIIGQe~Iv~~LknaI~~~r----------------l~HAyLFtGPpGtGKTTLARiLAk~--Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 17 QMVGQSHVLHALTNALTQQR----------------LHHAYLFTGTRGVGKTSLARLFAKG--LNCEQGVTATPCGVCSS 78 (944)
T ss_pred HhcCcHHHHHHHHHHHHhCC----------------CCeEEEEECCCCCCHHHHHHHHHHh--ccCccCCCCCCCCCchH
Confidence 78999999999999887332 3456689999999999999999873 2111
Q ss_pred --------CCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH-HHhcCceEEEEecCCCCCCcccHHHHH
Q 001993 246 --------FNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLR-ESIEGKKFFLVLDDVWTEEPQNWEQLL 316 (985)
Q Consensus 246 --------f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~~~~~~l~ 316 (985)
|..++++.......+.. ++.| ...+. .-..+++-++|||++.......++.|+
T Consensus 79 C~~i~~g~~~DviEidAas~~kVDd-IReL-----------------ie~v~~~P~~gk~KViIIDEAh~LT~eAqNALL 140 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAASRTKVDD-TREL-----------------LDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALL 140 (944)
T ss_pred HHHHhcCCCceEEEeccccccCHHH-HHHH-----------------HHHHHhhhhcCCcEEEEEechHhcCHHHHHHHH
Confidence 11112221111111111 1111 21111 112467789999999888778888898
Q ss_pred hhhcCCCCCcEEEEEcCc-hhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001993 317 GCLRCGSKESRILVTTRN-EKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 317 ~~l~~~~~gs~iivTtR~-~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 395 (985)
..+.......++|++|.+ ..+...+-. ....|++.+++.++..+.+.+.+...+. ....+....|++.++|.|
T Consensus 141 KtLEEPP~~vrFILaTTe~~kLl~TIlS-RCq~f~fkpLs~eEI~~~L~~il~~EgI-----~~edeAL~lIA~~S~Gd~ 214 (944)
T PRK14949 141 KTLEEPPEHVKFLLATTDPQKLPVTVLS-RCLQFNLKSLTQDEIGTQLNHILTQEQL-----PFEAEALTLLAKAANGSM 214 (944)
T ss_pred HHHhccCCCeEEEEECCCchhchHHHHH-hheEEeCCCCCHHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHcCCCH
Confidence 888766666666666554 333322111 1268999999999999998886643321 112356788999999988
Q ss_pred hHHHHH
Q 001993 396 LAVKTL 401 (985)
Q Consensus 396 Lai~~~ 401 (985)
--+..+
T Consensus 215 R~ALnL 220 (944)
T PRK14949 215 RDALSL 220 (944)
T ss_pred HHHHHH
Confidence 644433
No 48
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.58 E-value=7.6e-07 Score=92.84 Aligned_cols=157 Identities=18% Similarity=0.171 Sum_probs=94.1
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 294 (985)
....+.|+|++|+|||+||+.+++. ........++++++.-.+. . .. +.+.+++
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~~------~--------------~~----~~~~~~~ 90 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQA------D--------------PE----VLEGLEQ 90 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHHh------H--------------HH----HHhhccc
Confidence 3468999999999999999999984 3333345566665432110 0 00 1111222
Q ss_pred ceEEEEecCCCCCCcc-c-HHHHHhhhcC-CCCCcEEEEEcCchh---------hHHhhcCcccccccCCCCChHHHHHH
Q 001993 295 KKFFLVLDDVWTEEPQ-N-WEQLLGCLRC-GSKESRILVTTRNEK---------VAIAIGTTKFNIIPIELLSDEDCWSI 362 (985)
Q Consensus 295 k~~LlVlDdv~~~~~~-~-~~~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~~~l~~L~~~e~~~L 362 (985)
.-+||+||++..... . .+.+...+.. ...+.+||+||+... +...+... ..+++.+++.++...+
T Consensus 91 -~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~--~~i~l~~l~~~e~~~~ 167 (226)
T TIGR03420 91 -ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG--LVFQLPPLSDEEKIAA 167 (226)
T ss_pred -CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC--eeEecCCCCHHHHHHH
Confidence 348999999754432 2 3345444432 123447999888532 12222212 4789999999999999
Q ss_pred HHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhh
Q 001993 363 FSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLL 405 (985)
Q Consensus 363 f~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L 405 (985)
+...+..... . -..+..+.|++.+.|.|..+..+...+
T Consensus 168 l~~~~~~~~~--~---~~~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 168 LQSRAARRGL--Q---LPDEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HHHHHHHcCC--C---CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 8875532221 1 113556778888999998776665444
No 49
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=2.4e-06 Score=93.42 Aligned_cols=178 Identities=19% Similarity=0.216 Sum_probs=115.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcch----hhhccCCceEEEEe
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDN----EVRNHFNEKIWVCV 254 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----~~~~~f~~~~wv~~ 254 (985)
+++|-+.-++.+..++..+. -.....++|+.|+||||+|+.++..- ....|.+...|...
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~----------------~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~ 68 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNR----------------FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI 68 (313)
T ss_pred hccCcHHHHHHHHHHHHcCC----------------CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence 68899888999999986432 34678899999999999999998721 12234444444331
Q ss_pred -CCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcC
Q 001993 255 -SEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTR 333 (985)
Q Consensus 255 -s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 333 (985)
+......+ .+++.+.+... -..+++-++|+|+++......++.++..+.....++.+|++|.
T Consensus 69 ~~~~i~v~~-ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~ 131 (313)
T PRK05564 69 NKKSIGVDD-IRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCE 131 (313)
T ss_pred cCCCCCHHH-HHHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 11122222 22222222111 1135666788888877777789999999998888999998887
Q ss_pred chhhH-HhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHH
Q 001993 334 NEKVA-IAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVK 399 (985)
Q Consensus 334 ~~~v~-~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 399 (985)
+.+.. .... .....+.+.+++.++....+.+...+. . .+.+..++..++|.|.-+.
T Consensus 132 ~~~~ll~TI~-SRc~~~~~~~~~~~~~~~~l~~~~~~~----~-----~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 132 NLEQILDTIK-SRCQIYKLNRLSKEEIEKFISYKYNDI----K-----EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred ChHhCcHHHH-hhceeeeCCCcCHHHHHHHHHHHhcCC----C-----HHHHHHHHHHcCCCHHHHH
Confidence 65421 1111 112689999999999988886643211 1 1236778899999887554
No 50
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.53 E-value=1.6e-07 Score=94.66 Aligned_cols=47 Identities=26% Similarity=0.470 Sum_probs=32.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcc
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
.|+||+++++++.+.|.... ....+.+.|+|.+|+|||+|.++++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~--------------~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQ--------------SGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTS--------------S-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH--------------cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999996332 356689999999999999999999984
No 51
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1.8e-06 Score=98.66 Aligned_cols=196 Identities=14% Similarity=0.209 Sum_probs=114.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhc---cCCceEEEEeC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRN---HFNEKIWVCVS 255 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~f~~~~wv~~s 255 (985)
++||-+..++.|.+++..+. -...+.++|..|+||||+|+.+++.-.-.. ... . .+
T Consensus 17 dVIGQe~vv~~L~~al~~gR----------------LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~----~~ 75 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQQR----------------LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-I----TA 75 (700)
T ss_pred HHcCcHHHHHHHHHHHHhCC----------------CceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-C----CC
Confidence 78999999999999997433 345778999999999999999876311000 000 0 00
Q ss_pred CCCCHHHHHHHHHHH-----hcCCCCCCCCHHHHHHHHHHH----hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCc
Q 001993 256 EPFDDIRIAKAILES-----LKGSATNAVESETVLKQLRES----IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKES 326 (985)
Q Consensus 256 ~~~~~~~~~~~i~~~-----l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 326 (985)
..+..-...+.|... +..+.......+++.+.+... ..++.-++|||+++......++.++..+.....+.
T Consensus 76 ~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v 155 (700)
T PRK12323 76 QPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHV 155 (700)
T ss_pred CCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCc
Confidence 000000011111100 000001112233333222221 14567799999998887788888988887655566
Q ss_pred EEEEEcC-chhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHH
Q 001993 327 RILVTTR-NEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTL 401 (985)
Q Consensus 327 ~iivTtR-~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 401 (985)
++|++|. ...+...+.. ....+.+.+++.++..+.+.+.+...+.. ...+....|++.++|.|.....+
T Consensus 156 ~FILaTtep~kLlpTIrS-RCq~f~f~~ls~eei~~~L~~Il~~Egi~-----~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 156 KFILATTDPQKIPVTVLS-RCLQFNLKQMPPGHIVSHLDAILGEEGIA-----HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred eEEEEeCChHhhhhHHHH-HHHhcccCCCChHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 6555554 4443322111 12689999999999999888766433221 11245678999999999755443
No 52
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.2e-08 Score=106.03 Aligned_cols=214 Identities=22% Similarity=0.198 Sum_probs=127.1
Q ss_pred cccCCCCCeEecCCCCCccccch--hhcCCCCCcEeeccCccccccc---chhhhhccccceeecccccccccccCCCcC
Q 001993 621 IKKLIHLRYLALGENPWIKELPE--ALCELCNLQTLDVSLCHYLKRL---PERIGQLINLRHLMNSKEEWSRLSYMPRGM 695 (985)
Q Consensus 621 i~~l~~Lr~L~L~~~~~i~~lP~--~i~~L~~L~~L~l~~~~~l~~l---P~~i~~L~~L~~L~l~~n~~~~l~~~p~~i 695 (985)
-.++++||...|.++. +...+. -...|++++.|||++|- +... -.-...|++|+.|+++.|.... | +
T Consensus 117 Qsn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nrl~~----~--~ 188 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNRLSN----F--I 188 (505)
T ss_pred hhhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccccccC----C--c
Confidence 3567888888888887 766663 56678888888888775 3222 2233557777777777443210 0 0
Q ss_pred CCCCCCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCc
Q 001993 696 ERLTGLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKT 775 (985)
Q Consensus 696 ~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 775 (985)
+. . .-..+++ |+.|.|+.|+.
T Consensus 189 ~s---~------------------~~~~l~~-----------------------------------lK~L~l~~CGl--- 209 (505)
T KOG3207|consen 189 SS---N------------------TTLLLSH-----------------------------------LKQLVLNSCGL--- 209 (505)
T ss_pred cc---c------------------chhhhhh-----------------------------------hheEEeccCCC---
Confidence 00 0 0011222 22233332220
Q ss_pred chhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCC--cCCCCCCCCccceeeccCCCCceE
Q 001993 776 KDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECE--CLPPLGKLPCLETLVLEGMSSVKR 853 (985)
Q Consensus 776 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~--~l~~l~~l~~L~~L~L~~~~~l~~ 853 (985)
....+...+..+++|+.|.+.+|.+.... -.....+..|+.|+|++|+.++ ..+..+.||.|..|+++.|. +..
T Consensus 210 -s~k~V~~~~~~fPsl~~L~L~~N~~~~~~--~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~s 285 (505)
T KOG3207|consen 210 -SWKDVQWILLTFPSLEVLYLEANEIILIK--ATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IAS 285 (505)
T ss_pred -CHHHHHHHHHhCCcHHHhhhhccccccee--cchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cch
Confidence 11223333445678888888887533221 1122357789999999997665 34678899999999998764 444
Q ss_pred eCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeecccc
Q 001993 854 LGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSP 925 (985)
Q Consensus 854 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~ 925 (985)
+.. ...+. ......||+|++|.+.. +++.+|.... ....+++|+.|.+..++
T Consensus 286 i~~--~d~~s--------------~~kt~~f~kL~~L~i~~-N~I~~w~sl~---~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 286 IAE--PDVES--------------LDKTHTFPKLEYLNISE-NNIRDWRSLN---HLRTLENLKHLRITLNY 337 (505)
T ss_pred hcC--CCccc--------------hhhhcccccceeeeccc-Cccccccccc---hhhccchhhhhhccccc
Confidence 321 11100 00124799999999987 5567777654 45578899999876543
No 53
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=6.1e-06 Score=90.69 Aligned_cols=208 Identities=20% Similarity=0.249 Sum_probs=134.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCc--eEEEEeCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNE--KIWVCVSE 256 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~--~~wv~~s~ 256 (985)
.+.+|+++++++...|...-. +..+.-+.|+|.+|.|||+.++.+.. ++...... +++|++..
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~-------------~~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~ 82 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR-------------GERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLE 82 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc-------------CCCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeee
Confidence 588999999999998875431 22333499999999999999999998 44444322 68999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc--CceEEEEecCCCCCCcccHHHHHhhhcCCCC-CcEE--EEE
Q 001993 257 PFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE--GKKFFLVLDDVWTEEPQNWEQLLGCLRCGSK-ESRI--LVT 331 (985)
Q Consensus 257 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~-gs~i--ivT 331 (985)
..+..+++..|+++++..+.......+....+.+.+. ++.+++|||++.......-+.+...+..... .++| |..
T Consensus 83 ~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i 162 (366)
T COG1474 83 LRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAV 162 (366)
T ss_pred CCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEE
Confidence 9999999999999998665556666777777777774 6899999999964322211334444443322 3443 333
Q ss_pred cCchhhHHhhcC-----cccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcC-CChhHHHHH
Q 001993 332 TRNEKVAIAIGT-----TKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCK-GLPLAVKTL 401 (985)
Q Consensus 332 tR~~~v~~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~-GlPLai~~~ 401 (985)
+-+......+.. -....+...|-+.+|-...+..++-..-.+....+..-+++..++..-+ ---.||..+
T Consensus 163 ~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 163 SNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred eccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 444333333322 1123478889999999999988764332211233333344444444444 444455444
No 54
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.49 E-value=2.6e-06 Score=94.83 Aligned_cols=197 Identities=14% Similarity=0.149 Sum_probs=110.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhc-cCC-ceEEEEeCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRN-HFN-EKIWVCVSE 256 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~-~~~wv~~s~ 256 (985)
+++|++..++.+..++.. +..+.+.|+|++|+||||+|+.+++. ... .+. ..+.+++++
T Consensus 16 ~~~g~~~~~~~L~~~~~~-----------------~~~~~lll~Gp~GtGKT~la~~~~~~--l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 16 DILGQDEVVERLSRAVDS-----------------PNLPHLLVQGPPGSGKTAAVRALARE--LYGDPWENNFTEFNVAD 76 (337)
T ss_pred HhcCCHHHHHHHHHHHhC-----------------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcccccceEEechhh
Confidence 689999999999888862 23345789999999999999999873 221 222 234454433
Q ss_pred CCCH--HHHHH--HHHHHhcCC-CCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCc
Q 001993 257 PFDD--IRIAK--AILESLKGS-ATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKES 326 (985)
Q Consensus 257 ~~~~--~~~~~--~i~~~l~~~-~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 326 (985)
-.+. ..+.. .....+... .......+.....+.... .+.+-+||+||+..........+...+.......
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~ 156 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTC 156 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCC
Confidence 1100 00000 000000000 000011122221121111 1345589999996654444555666665545556
Q ss_pred EEEEEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHH
Q 001993 327 RILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKT 400 (985)
Q Consensus 327 ~iivTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 400 (985)
++|+||.... +...+.. ....+.+.+++.++...++.+.+...+.. -..+....+++.++|.+-.+..
T Consensus 157 ~~Il~~~~~~~~~~~L~s-r~~~v~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 157 RFIIATRQPSKLIPPIRS-RCLPLFFRAPTDDELVDVLESIAEAEGVD-----YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred eEEEEeCChhhCchhhcC-CceEEEecCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHH
Confidence 7888775432 2222211 12578899999999999988876543321 1235678888999887765543
No 55
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.48 E-value=1.1e-06 Score=84.55 Aligned_cols=125 Identities=19% Similarity=0.187 Sum_probs=73.8
Q ss_pred ecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCH
Q 001993 181 RGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDD 260 (985)
Q Consensus 181 vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~ 260 (985)
+|++..++.+...+.. .....+.|+|.+|+|||++|+.+++. ....-..++++...+....
T Consensus 1 ~~~~~~~~~i~~~~~~-----------------~~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~ 61 (151)
T cd00009 1 VGQEEAIEALREALEL-----------------PPPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEG 61 (151)
T ss_pred CchHHHHHHHHHHHhC-----------------CCCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhh
Confidence 3788888999888763 23458899999999999999999984 3222234667765543332
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCC------CCCcEEEEEcCc
Q 001993 261 IRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCG------SKESRILVTTRN 334 (985)
Q Consensus 261 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~iivTtR~ 334 (985)
......+... ............++.++|+||++.........+...+... ..+..||+||..
T Consensus 62 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~ 129 (151)
T cd00009 62 LVVAELFGHF------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNR 129 (151)
T ss_pred hHHHHHhhhh------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCc
Confidence 2221111100 0011111223456789999999754222333344444322 357788888886
Q ss_pred hh
Q 001993 335 EK 336 (985)
Q Consensus 335 ~~ 336 (985)
..
T Consensus 130 ~~ 131 (151)
T cd00009 130 PL 131 (151)
T ss_pred cc
Confidence 54
No 56
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.48 E-value=1.6e-06 Score=85.82 Aligned_cols=180 Identities=22% Similarity=0.280 Sum_probs=99.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+|||-+.-++.+.-++.... .. .....-+.+||++|+||||||.-+++ .....|. +.+...
T Consensus 25 efiGQ~~l~~~l~i~i~aa~----------~r--~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~~---~~sg~~-- 85 (233)
T PF05496_consen 25 EFIGQEHLKGNLKILIRAAK----------KR--GEALDHMLFYGPPGLGKTTLARIIAN--ELGVNFK---ITSGPA-- 85 (233)
T ss_dssp CS-S-HHHHHHHHHHHHHHH----------CT--TS---EEEEESSTTSSHHHHHHHHHH--HCT--EE---EEECCC--
T ss_pred HccCcHHHHhhhHHHHHHHH----------hc--CCCcceEEEECCCccchhHHHHHHHh--ccCCCeE---eccchh--
Confidence 79999988887655554221 00 24567899999999999999999998 4444442 222111
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC------CC-------
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS------KE------- 325 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------~g------- 325 (985)
.....++...+.. + +++-+|++|+++..+...-+.+.+.+..+. .|
T Consensus 86 -------------------i~k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~ 144 (233)
T PF05496_consen 86 -------------------IEKAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIR 144 (233)
T ss_dssp ---------------------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEE
T ss_pred -------------------hhhHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceee
Confidence 0111222222222 2 245578889998877666666777665431 11
Q ss_pred ------cEEEEEcCchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHH
Q 001993 326 ------SRILVTTRNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVK 399 (985)
Q Consensus 326 ------s~iivTtR~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 399 (985)
+-|=-|||...+...+...-.-..+++..+.+|-.++..+.+..-.. +-.++.+.+|+++|.|-|--..
T Consensus 145 ~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i-----~i~~~~~~~Ia~rsrGtPRiAn 219 (233)
T PF05496_consen 145 INLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI-----EIDEDAAEEIARRSRGTPRIAN 219 (233)
T ss_dssp EE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT------EE-HHHHHHHHHCTTTSHHHHH
T ss_pred ccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC-----CcCHHHHHHHHHhcCCChHHHH
Confidence 23455777655544433321124579999999999999886654432 2234679999999999997544
Q ss_pred HHHh
Q 001993 400 TLGS 403 (985)
Q Consensus 400 ~~~~ 403 (985)
-+-+
T Consensus 220 rll~ 223 (233)
T PF05496_consen 220 RLLR 223 (233)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 57
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=4.4e-06 Score=96.01 Aligned_cols=185 Identities=19% Similarity=0.254 Sum_probs=113.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhh----------------
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEV---------------- 242 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---------------- 242 (985)
+++|-+..++.+...+..+. -...+.++|+.|+||||+|+.+++.-.-
T Consensus 17 diiGq~~~v~~L~~~i~~~r----------------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~ 80 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQK----------------VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCV 80 (546)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 68999999999998887332 3456789999999999999999862100
Q ss_pred ---hccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH-HhcCceEEEEecCCCCCCcccHHHHHhh
Q 001993 243 ---RNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRE-SIEGKKFFLVLDDVWTEEPQNWEQLLGC 318 (985)
Q Consensus 243 ---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~ 318 (985)
.+.|...+++........++ ..++...+.. -..+++-++|+|+++......++.++..
T Consensus 81 ~i~~~~~~dlieidaas~~gvd~------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~ 142 (546)
T PRK14957 81 AINNNSFIDLIEIDAASRTGVEE------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKT 142 (546)
T ss_pred HHhcCCCCceEEeecccccCHHH------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHH
Confidence 01122233332222111111 1122222221 1245677999999987777788889988
Q ss_pred hcCCCCCcEEEEEc-CchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChh-
Q 001993 319 LRCGSKESRILVTT-RNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPL- 396 (985)
Q Consensus 319 l~~~~~gs~iivTt-R~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL- 396 (985)
+......+.+|++| ....+...+. .....+++.+++.++....+.+.+...+.. ........|++.++|.+-
T Consensus 143 LEepp~~v~fIL~Ttd~~kil~tI~-SRc~~~~f~~Ls~~eI~~~L~~il~~egi~-----~e~~Al~~Ia~~s~GdlR~ 216 (546)
T PRK14957 143 LEEPPEYVKFILATTDYHKIPVTIL-SRCIQLHLKHISQADIKDQLKIILAKENIN-----SDEQSLEYIAYHAKGSLRD 216 (546)
T ss_pred HhcCCCCceEEEEECChhhhhhhHH-HheeeEEeCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHH
Confidence 88766666666554 4333332211 112689999999999888887755332211 123456789999999664
Q ss_pred HHHHHHh
Q 001993 397 AVKTLGS 403 (985)
Q Consensus 397 ai~~~~~ 403 (985)
|+..+-.
T Consensus 217 alnlLek 223 (546)
T PRK14957 217 ALSLLDQ 223 (546)
T ss_pred HHHHHHH
Confidence 4444433
No 58
>PRK04195 replication factor C large subunit; Provisional
Probab=98.46 E-value=1.1e-05 Score=93.48 Aligned_cols=186 Identities=13% Similarity=0.194 Sum_probs=113.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.+..++++.+|+..... +...+.+.|+|++|+||||+|+.+++. .. |+ .+-+++++..
T Consensus 15 dlvg~~~~~~~l~~~l~~~~~-------------g~~~~~lLL~GppG~GKTtla~ala~e--l~--~~-~ielnasd~r 76 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWLK-------------GKPKKALLLYGPPGVGKTSLAHALAND--YG--WE-VIELNASDQR 76 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHhc-------------CCCCCeEEEECCCCCCHHHHHHHHHHH--cC--CC-EEEEcccccc
Confidence 799999999999999975430 123678999999999999999999984 21 22 3344554433
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCc----ccHHHHHhhhcCCCCCcEEEEEcCc
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEP----QNWEQLLGCLRCGSKESRILVTTRN 334 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~iivTtR~ 334 (985)
+. .....++....... .....++-+||+|+++.... ..+..+...+.. .+..||+|+.+
T Consensus 77 ~~-~~i~~~i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~ 139 (482)
T PRK04195 77 TA-DVIERVAGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTAND 139 (482)
T ss_pred cH-HHHHHHHHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccC
Confidence 22 22333332221110 00113678999999975322 335556665553 23346666643
Q ss_pred hh-hHH-hhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhh
Q 001993 335 EK-VAI-AIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLL 405 (985)
Q Consensus 335 ~~-v~~-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L 405 (985)
.. ... .+.. ....+.+.+++.++....+.+.+...+.. .+ .++...|++.++|..-.+......+
T Consensus 140 ~~~~~~k~Lrs-r~~~I~f~~~~~~~i~~~L~~i~~~egi~--i~---~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 140 PYDPSLRELRN-ACLMIEFKRLSTRSIVPVLKRICRKEGIE--CD---DEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred ccccchhhHhc-cceEEEecCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 22 211 1111 12578999999999999888876544332 11 3567889999999776655443333
No 59
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=6.3e-07 Score=102.82 Aligned_cols=194 Identities=19% Similarity=0.204 Sum_probs=113.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|-+...+.|..++..+. -...+.++|++|+||||+|+.+++.-.-.+.+....|.|.+-.
T Consensus 15 dvvGq~~v~~~L~~~i~~~~----------------l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~- 77 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQGR----------------LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL- 77 (504)
T ss_pred HhcChHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-
Confidence 68999988888888887332 3456799999999999999999874221122222222221100
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcC
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTR 333 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 333 (985)
.+......-+..+.. ......+.+.. +.+.+ .+++-++|+|+++......++.+...+........+|++|.
T Consensus 78 ~i~~~~h~dv~el~~--~~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~ 154 (504)
T PRK14963 78 AVRRGAHPDVLEIDA--ASNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATT 154 (504)
T ss_pred HHhcCCCCceEEecc--cccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 000000000000000 01112222211 22222 35667999999987766778888888876555556555554
Q ss_pred c-hhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001993 334 N-EKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 334 ~-~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 398 (985)
. ..+...+.. ....+++.+++.++....+.+.+...+.. -..+....|++.++|.+--+
T Consensus 155 ~~~kl~~~I~S-Rc~~~~f~~ls~~el~~~L~~i~~~egi~-----i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 155 EPEKMPPTILS-RTQHFRFRRLTEEEIAGKLRRLLEAEGRE-----AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred ChhhCChHHhc-ceEEEEecCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHH
Confidence 3 333322221 12689999999999999998876544321 12356788999999988644
No 60
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=3.4e-06 Score=97.78 Aligned_cols=180 Identities=13% Similarity=0.226 Sum_probs=112.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhh---------------
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVR--------------- 243 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------------- 243 (985)
+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.++..-.-.
T Consensus 17 dIIGQe~vv~~L~~ai~~~r----------------l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr 80 (709)
T PRK08691 17 DLVGQEHVVKALQNALDEGR----------------LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCT 80 (709)
T ss_pred HHcCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHH
Confidence 79999999999999987432 34678999999999999999987631100
Q ss_pred ----ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH----HhcCceEEEEecCCCCCCcccHHHH
Q 001993 244 ----NHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRE----SIEGKKFFLVLDDVWTEEPQNWEQL 315 (985)
Q Consensus 244 ----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l 315 (985)
+.|..++.+.... ....+.+...+.. -..+++-++|+|++........+.+
T Consensus 81 ~i~~g~~~DvlEidaAs---------------------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NAL 139 (709)
T PRK08691 81 QIDAGRYVDLLEIDAAS---------------------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAM 139 (709)
T ss_pred HHhccCccceEEEeccc---------------------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHH
Confidence 0011111221111 1122222222211 1235667999999977665567778
Q ss_pred HhhhcCCCCCcEEEEEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCC
Q 001993 316 LGCLRCGSKESRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGL 394 (985)
Q Consensus 316 ~~~l~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 394 (985)
+..+.......++|++|.+.. +...+. .....+.+.+++.++....+.+.+...+.. -..+....|++.++|.
T Consensus 140 LKtLEEPp~~v~fILaTtd~~kL~~TIr-SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~-----id~eAL~~Ia~~A~Gs 213 (709)
T PRK08691 140 LKTLEEPPEHVKFILATTDPHKVPVTVL-SRCLQFVLRNMTAQQVADHLAHVLDSEKIA-----YEPPALQLLGRAAAGS 213 (709)
T ss_pred HHHHHhCCCCcEEEEEeCCccccchHHH-HHHhhhhcCCCCHHHHHHHHHHHHHHcCCC-----cCHHHHHHHHHHhCCC
Confidence 888875555667777765432 221111 112578899999999999998776544321 1234678899999998
Q ss_pred hhHHHHH
Q 001993 395 PLAVKTL 401 (985)
Q Consensus 395 PLai~~~ 401 (985)
+.-+...
T Consensus 214 lRdAlnL 220 (709)
T PRK08691 214 MRDALSL 220 (709)
T ss_pred HHHHHHH
Confidence 8654433
No 61
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=1.1e-06 Score=96.84 Aligned_cols=195 Identities=14% Similarity=0.104 Sum_probs=115.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCc----------
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNE---------- 248 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~---------- 248 (985)
+++|-+...+.+.+.+..+. -...+.++|+.|+||+|+|..++..-.-......
T Consensus 20 ~iiGq~~~~~~L~~~~~~~r----------------l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l 83 (365)
T PRK07471 20 ALFGHAAAEAALLDAYRSGR----------------LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSL 83 (365)
T ss_pred hccChHHHHHHHHHHHHcCC----------------CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccc
Confidence 79999999999999887433 3457899999999999999888762100000000
Q ss_pred --------eEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHH
Q 001993 249 --------KIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQL 315 (985)
Q Consensus 249 --------~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l 315 (985)
.-|+....++|...+.... ..-+.........+++. .+.+.+ .+.+.++|+|+++..+....+.+
T Consensus 84 ~~~~~c~~c~~i~~~~HPDl~~i~~~~-~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaL 161 (365)
T PRK07471 84 AIDPDHPVARRIAAGAHGGLLTLERSW-NEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANAL 161 (365)
T ss_pred cCCCCChHHHHHHccCCCCeEEEeccc-ccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHH
Confidence 0011111111111000000 00000000122344432 333333 25677999999988888888889
Q ss_pred HhhhcCCCCCcEEEEEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCC
Q 001993 316 LGCLRCGSKESRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGL 394 (985)
Q Consensus 316 ~~~l~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 394 (985)
+..+.....+..+|++|.+.. +.... ......+.+.+++.++..+++.+..... .+ +....+++.++|.
T Consensus 162 LK~LEepp~~~~~IL~t~~~~~llpti-~SRc~~i~l~~l~~~~i~~~L~~~~~~~------~~---~~~~~l~~~s~Gs 231 (365)
T PRK07471 162 LKVLEEPPARSLFLLVSHAPARLLPTI-RSRCRKLRLRPLAPEDVIDALAAAGPDL------PD---DPRAALAALAEGS 231 (365)
T ss_pred HHHHhcCCCCeEEEEEECCchhchHHh-hccceEEECCCCCHHHHHHHHHHhcccC------CH---HHHHHHHHHcCCC
Confidence 888886666677777776654 32221 1223689999999999999998754211 11 1126789999999
Q ss_pred hhHHHHH
Q 001993 395 PLAVKTL 401 (985)
Q Consensus 395 PLai~~~ 401 (985)
|+....+
T Consensus 232 p~~Al~l 238 (365)
T PRK07471 232 VGRALRL 238 (365)
T ss_pred HHHHHHH
Confidence 9866544
No 62
>PLN03025 replication factor C subunit; Provisional
Probab=98.44 E-value=6e-06 Score=90.51 Aligned_cols=182 Identities=14% Similarity=0.173 Sum_probs=108.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCc-eEEEEeCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNE-KIWVCVSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~ 257 (985)
+++|.+..++.|..++..+ +.+-+.++|++|+||||+|+.+++.. ....|.. ++-++.++.
T Consensus 14 ~~~g~~~~~~~L~~~~~~~-----------------~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDG-----------------NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDD 75 (319)
T ss_pred HhcCcHHHHHHHHHHHhcC-----------------CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeeccccc
Confidence 6889888888888776522 33447799999999999999998731 1222321 222233332
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCch-h
Q 001993 258 FDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNE-K 336 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~ 336 (985)
.... ..+.+++.+...... .-.++.-++|+|+++.......+.+...+......+++|+++... .
T Consensus 76 ~~~~-~vr~~i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~ 141 (319)
T PLN03025 76 RGID-VVRNKIKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSK 141 (319)
T ss_pred ccHH-HHHHHHHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccc
Confidence 2221 222222221110000 002456799999998766555666766665545567777776542 2
Q ss_pred hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001993 337 VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 337 v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 398 (985)
+...+.. ....+++.++++++....+...+...+.. .+ .+....|++.++|..-.+
T Consensus 142 i~~~L~S-Rc~~i~f~~l~~~~l~~~L~~i~~~egi~--i~---~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 142 IIEPIQS-RCAIVRFSRLSDQEILGRLMKVVEAEKVP--YV---PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cchhHHH-hhhcccCCCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCCHHHH
Confidence 2111111 12578999999999999988877544322 11 345788899999876544
No 63
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=4.3e-06 Score=97.52 Aligned_cols=194 Identities=17% Similarity=0.233 Sum_probs=114.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
++||-+..++.|...+..+. -...+.++|..|+||||+|+.++.. +.... .. ....+
T Consensus 17 divGQe~vv~~L~~~l~~~r----------------l~hAyLf~Gp~GvGKTTlAr~lAk~--L~c~~----~~-~~~pC 73 (647)
T PRK07994 17 EVVGQEHVLTALANALDLGR----------------LHHAYLFSGTRGVGKTTIARLLAKG--LNCET----GI-TATPC 73 (647)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHh--hhhcc----CC-CCCCC
Confidence 78999999999998887332 3356789999999999999999873 21110 00 00011
Q ss_pred CHHHHHHHHHHHhc-----CCCCCCCCHHHHHHHHHH----HhcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEE
Q 001993 259 DDIRIAKAILESLK-----GSATNAVESETVLKQLRE----SIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRIL 329 (985)
Q Consensus 259 ~~~~~~~~i~~~l~-----~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 329 (985)
..-...+.|...-. .........+++...+.. -..+++-++|+|+++......++.++..+.......++|
T Consensus 74 g~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FI 153 (647)
T PRK07994 74 GECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFL 153 (647)
T ss_pred CCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEE
Confidence 11111111111000 000001122322221111 124677799999998887788888998888766666666
Q ss_pred EEcCc-hhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHH
Q 001993 330 VTTRN-EKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTL 401 (985)
Q Consensus 330 vTtR~-~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 401 (985)
++|.+ ..+...+.. ....+++.+++.++....+.+.....+.. ...+....|++.++|.+--+..+
T Consensus 154 L~Tt~~~kLl~TI~S-RC~~~~f~~Ls~~ei~~~L~~il~~e~i~-----~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 154 LATTDPQKLPVTILS-RCLQFHLKALDVEQIRQQLEHILQAEQIP-----FEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred EecCCccccchHHHh-hheEeeCCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 65554 333322111 13689999999999999988765332211 11345678999999988744443
No 64
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.41 E-value=6.1e-06 Score=91.10 Aligned_cols=182 Identities=14% Similarity=0.139 Sum_probs=108.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEe--CC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCV--SE 256 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--s~ 256 (985)
+++|++..++.+..++..+ ..+.+.|+|.+|+||||+|+.+++.. ....+.. .++.+ +.
T Consensus 18 ~~~g~~~~~~~l~~~i~~~-----------------~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~~-~~i~~~~~~ 78 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEK-----------------NMPHLLFAGPPGTGKTTAALALAREL-YGEDWRE-NFLELNASD 78 (319)
T ss_pred HhcCcHHHHHHHHHHHhCC-----------------CCCeEEEECCCCCCHHHHHHHHHHHH-cCCcccc-ceEEecccc
Confidence 6899999999999988632 23457999999999999999998731 1112211 22222 22
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchh
Q 001993 257 PFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEK 336 (985)
Q Consensus 257 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 336 (985)
..... .....+..+....+ .....+-++++|++..........+...+......+++|+++....
T Consensus 79 ~~~~~-~~~~~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~ 143 (319)
T PRK00440 79 ERGID-VIRNKIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSS 143 (319)
T ss_pred ccchH-HHHHHHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCcc
Confidence 21111 11111111111000 0012356899999966554556667777665555667777764322
Q ss_pred -hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHH
Q 001993 337 -VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKT 400 (985)
Q Consensus 337 -v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 400 (985)
+...... ....+++.+++.++....+.+.+...+.. -..+....+++.++|.+--+..
T Consensus 144 ~l~~~l~s-r~~~~~~~~l~~~ei~~~l~~~~~~~~~~-----i~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 144 KIIDPIQS-RCAVFRFSPLKKEAVAERLRYIAENEGIE-----ITDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred ccchhHHH-HhheeeeCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHH
Confidence 2111111 12468999999999988888876544321 1134678889999998765433
No 65
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=6.7e-06 Score=93.11 Aligned_cols=181 Identities=17% Similarity=0.215 Sum_probs=114.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcch------------------
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDN------------------ 240 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~------------------ 240 (985)
++||-+..++.+.+.+..+. -...+.++|+.|+||||+|+.++..-
T Consensus 14 dliGQe~vv~~L~~a~~~~r----------------i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~ 77 (491)
T PRK14964 14 DLVGQDVLVRILRNAFTLNK----------------IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCI 77 (491)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHH
Confidence 78999998888888886332 34578999999999999999887510
Q ss_pred hh-hccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhh
Q 001993 241 EV-RNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCL 319 (985)
Q Consensus 241 ~~-~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l 319 (985)
.+ .+.+..++.++.++...+.+ .+.+++..... -..++.-++|+|+++......++.+...+
T Consensus 78 ~i~~~~~~Dv~eidaas~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~L 140 (491)
T PRK14964 78 SIKNSNHPDVIEIDAASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTL 140 (491)
T ss_pred HHhccCCCCEEEEecccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHH
Confidence 00 01222334444433222222 12222221100 01356678999999877667788888888
Q ss_pred cCCCCCcEEEEEcCc-hhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001993 320 RCGSKESRILVTTRN-EKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 320 ~~~~~gs~iivTtR~-~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 398 (985)
......+++|++|.. ..+...+.. ....+++.+++.++....+.+.+...+.. -..+....|++.++|.+-.+
T Consensus 141 EePp~~v~fIlatte~~Kl~~tI~S-Rc~~~~f~~l~~~el~~~L~~ia~~Egi~-----i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 141 EEPAPHVKFILATTEVKKIPVTIIS-RCQRFDLQKIPTDKLVEHLVDIAKKENIE-----HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred hCCCCCeEEEEEeCChHHHHHHHHH-hheeeecccccHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHH
Confidence 876667777766643 343332211 12688999999999999998876544321 12345778999999887644
No 66
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=9.3e-06 Score=92.80 Aligned_cols=194 Identities=17% Similarity=0.214 Sum_probs=113.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCc-eEEEEeCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNE-KIWVCVSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~s~~ 257 (985)
+++|-+..+..+...+..+. -...+.++|+.|+||||+|+.+++.-.-...... ..+..+...
T Consensus 22 dliGq~~vv~~L~~ai~~~r----------------i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C 85 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDR----------------LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC 85 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC
Confidence 68899999988888776332 3467899999999999999999873110000000 000000000
Q ss_pred CCHHHHHHHHHHHhc-----CCCCCCCCHHHHHHHHHHH----hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEE
Q 001993 258 FDDIRIAKAILESLK-----GSATNAVESETVLKQLRES----IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRI 328 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~-----~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 328 (985)
.....+..... .+.......+++...+... +.+++-++|+|+++......++.+...+......+.+
T Consensus 86 ----~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vf 161 (507)
T PRK06645 86 ----TNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIF 161 (507)
T ss_pred ----hHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEE
Confidence 00011110000 0000112223332222211 2356779999999887777888998888866666666
Q ss_pred EE-EcCchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001993 329 LV-TTRNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 329 iv-TtR~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 398 (985)
|+ ||+...+...+.. ....+++.+++.++....+.+.+...+.. -..+....|++.++|.+--+
T Consensus 162 I~aTte~~kI~~tI~S-Rc~~~ef~~ls~~el~~~L~~i~~~egi~-----ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 162 IFATTEVQKIPATIIS-RCQRYDLRRLSFEEIFKLLEYITKQENLK-----TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred EEEeCChHHhhHHHHh-cceEEEccCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHH
Confidence 55 4454444433322 12578999999999999998877544321 11345677999999987544
No 67
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=3.6e-06 Score=94.04 Aligned_cols=195 Identities=16% Similarity=0.111 Sum_probs=113.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhcc-CCceEEEEeCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNH-FNEKIWVCVSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~s~~ 257 (985)
+++|-+..+..|..++..+. -...+.++|+.|+||||+|+.++.. +... ... ...+...
T Consensus 19 dvVGQe~iv~~L~~~i~~~r----------------i~ha~Lf~GP~GtGKTTlAriLAk~--Lnce~~~~--~~pCg~C 78 (484)
T PRK14956 19 DVIHQDLAIGALQNALKSGK----------------IGHAYIFFGPRGVGKTTIARILAKR--LNCENPIG--NEPCNEC 78 (484)
T ss_pred HHhChHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHh--cCcccccC--ccccCCC
Confidence 68999999999988887332 2356899999999999999999873 2111 000 0001111
Q ss_pred CCHHHHHHHHHHHhcC-CCCCCCCHHH---HHHHHHHH-hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEE-
Q 001993 258 FDDIRIAKAILESLKG-SATNAVESET---VLKQLRES-IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVT- 331 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~~-~~~~~~~~~~---~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT- 331 (985)
.+-..+...+...+.. ........+. +...+... ..++.-++|+|+++......++.++..+........+|++
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaT 158 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILAT 158 (484)
T ss_pred cHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeec
Confidence 1111111111000000 0001111222 22222211 2456779999999887778888888888755455555544
Q ss_pred cCchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHH
Q 001993 332 TRNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVK 399 (985)
Q Consensus 332 tR~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 399 (985)
|....+...+.. ....|.+.+++.++..+.+.+.+...+.. -..+....|++.++|.+--..
T Consensus 159 te~~kI~~TI~S-RCq~~~f~~ls~~~i~~~L~~i~~~Egi~-----~e~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 159 TEFHKIPETILS-RCQDFIFKKVPLSVLQDYSEKLCKIENVQ-----YDQEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred CChhhccHHHHh-hhheeeecCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCChHHHHH
Confidence 444444322211 12679999999999999888876443321 123567889999999986443
No 68
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=5.6e-06 Score=90.71 Aligned_cols=193 Identities=16% Similarity=0.233 Sum_probs=117.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhcc----CCceEEEEe
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNH----FNEKIWVCV 254 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~ 254 (985)
.++|-+...+.+...+..+. -+..+.|+|+.|+||||+|..++.. +-.+ +... ..
T Consensus 24 ~l~Gh~~a~~~L~~a~~~gr----------------l~ha~L~~G~~G~GKttlA~~lA~~--Llc~~~~~~~~~---~~ 82 (351)
T PRK09112 24 RLFGHEEAEAFLAQAYREGK----------------LHHALLFEGPEGIGKATLAFHLANH--ILSHPDPAEAPE---TL 82 (351)
T ss_pred hccCcHHHHHHHHHHHHcCC----------------CCeeEeeECCCCCCHHHHHHHHHHH--HcCCCccccCcc---cc
Confidence 78999999999999987433 3457899999999999999998873 2211 1111 00
Q ss_pred CCCCCHHHHHHHHHHH-------hcCC--C-----CCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHH
Q 001993 255 SEPFDDIRIAKAILES-------LKGS--A-----TNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQL 315 (985)
Q Consensus 255 s~~~~~~~~~~~i~~~-------l~~~--~-----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l 315 (985)
..........+.|... +... . ......+++. .+.+.+ .+++-++|+|+++..+....+.+
T Consensus 83 ~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaL 161 (351)
T PRK09112 83 ADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAI 161 (351)
T ss_pred CCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHH
Confidence 1111111222333222 1000 0 1112234433 344443 35677999999988877778888
Q ss_pred HhhhcCCCCCcEEEEEc-CchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCC
Q 001993 316 LGCLRCGSKESRILVTT-RNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGL 394 (985)
Q Consensus 316 ~~~l~~~~~gs~iivTt-R~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 394 (985)
+..+........+|++| +...+...... ....+++.+++.++..+++.+..... . ...+.+..|++.++|.
T Consensus 162 Lk~LEEpp~~~~fiLit~~~~~llptIrS-Rc~~i~l~pl~~~~~~~~L~~~~~~~------~-~~~~~~~~i~~~s~G~ 233 (351)
T PRK09112 162 LKTLEEPPARALFILISHSSGRLLPTIRS-RCQPISLKPLDDDELKKALSHLGSSQ------G-SDGEITEALLQRSKGS 233 (351)
T ss_pred HHHHhcCCCCceEEEEECChhhccHHHHh-hccEEEecCCCHHHHHHHHHHhhccc------C-CCHHHHHHHHHHcCCC
Confidence 88887655555544444 44333222211 23689999999999999998743211 1 1134467899999999
Q ss_pred hhHHHHH
Q 001993 395 PLAVKTL 401 (985)
Q Consensus 395 PLai~~~ 401 (985)
|.....+
T Consensus 234 pr~Al~l 240 (351)
T PRK09112 234 VRKALLL 240 (351)
T ss_pred HHHHHHH
Confidence 9866544
No 69
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.38 E-value=1.2e-05 Score=80.93 Aligned_cols=91 Identities=15% Similarity=0.236 Sum_probs=65.6
Q ss_pred CceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCch-hhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCC
Q 001993 294 GKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNE-KVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRL 372 (985)
Q Consensus 294 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 372 (985)
+.+-++|+||+.......++.++..+......+.+|++|++. .+...+.. ....+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~s-r~~~~~~~~~~~~~~~~~l~~~--g--i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRS-RCQVLPFPPLSEEALLQWLIRQ--G--I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHh-hcEEeeCCCCCHHHHHHHHHHc--C--C
Confidence 566789999997766667888888887766667777777653 22222211 2268999999999999988876 1 1
Q ss_pred CcccchhHHHHHHHHHHhcCCChh
Q 001993 373 DIEESENFENIGRQIVSKCKGLPL 396 (985)
Q Consensus 373 ~~~~~~~~~~~~~~i~~~c~GlPL 396 (985)
. .+.+..|++.++|.|.
T Consensus 170 --~-----~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 --S-----EEAAELLLALAGGSPG 186 (188)
T ss_pred --C-----HHHHHHHHHHcCCCcc
Confidence 1 2558899999999885
No 70
>PF13173 AAA_14: AAA domain
Probab=98.38 E-value=1.2e-06 Score=81.75 Aligned_cols=121 Identities=23% Similarity=0.291 Sum_probs=77.9
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
+++.|.|+.|+|||||+++++.+.. ....+++++..+........ .+ ..+.+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD----------------PD-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh----------------hh-hHHHHHHhhccCC
Confidence 5899999999999999999997422 33457777765532211000 00 2223333334478
Q ss_pred EEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchhhHHhhc----CcccccccCCCCChHHH
Q 001993 297 FFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEKVAIAIG----TTKFNIIPIELLSDEDC 359 (985)
Q Consensus 297 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~----~~~~~~~~l~~L~~~e~ 359 (985)
.+++||++... ..|......+.......+|++|+........-. ......+++.||+..|.
T Consensus 63 ~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 89999999553 577777776665556679999988766553211 11235688999988763
No 71
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.37 E-value=3.7e-06 Score=87.04 Aligned_cols=162 Identities=18% Similarity=0.189 Sum_probs=99.7
Q ss_pred CCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 001993 213 TQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI 292 (985)
Q Consensus 213 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 292 (985)
.+.+..+.+||++|+||||||+.+.+..+... ..||..|....-..-.++|.++... ...+
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l 219 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN---------------EKSL 219 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH---------------HHhh
Confidence 35678889999999999999999998533222 4567766654444445555544211 1234
Q ss_pred cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEE--EcCchhhHHhhc-CcccccccCCCCChHHHHHHHHHHhc-
Q 001993 293 EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILV--TTRNEKVAIAIG-TTKFNIIPIELLSDEDCWSIFSQLAL- 368 (985)
Q Consensus 293 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~v~~~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~- 368 (985)
.++|.+|++|.|...+..+.+.+ +|.--+|+-++| ||.++...-... .....++.+++|+.++...++.+...
T Consensus 220 ~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~ 296 (554)
T KOG2028|consen 220 TKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIAS 296 (554)
T ss_pred hcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHh
Confidence 67899999999987654444444 444445665555 566654321110 11236899999999999998887332
Q ss_pred --CCCCCc--ccc---hhHHHHHHHHHHhcCCChh
Q 001993 369 --SRRLDI--EES---ENFENIGRQIVSKCKGLPL 396 (985)
Q Consensus 369 --~~~~~~--~~~---~~~~~~~~~i~~~c~GlPL 396 (985)
...... -+. .-...+..-++..|+|-.-
T Consensus 297 l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 297 LGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred hccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 111100 111 1234566777778888654
No 72
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=8.5e-06 Score=94.97 Aligned_cols=197 Identities=15% Similarity=0.212 Sum_probs=113.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccC--CceEEEEeCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHF--NEKIWVCVSE 256 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~ 256 (985)
++||-+..++.|.+++..+. -...+.++|..|+||||+|+.++..-.-.... ..... .
T Consensus 17 dviGQe~vv~~L~~~l~~~r----------------l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~ 76 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQQR----------------LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----T 76 (618)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----C
Confidence 68998888888988887432 34678999999999999999986521000000 00000 0
Q ss_pred CCCHHHHHHHHHHHh-----cCCCCCCCCHHHHHHHHHHH----hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcE
Q 001993 257 PFDDIRIAKAILESL-----KGSATNAVESETVLKQLRES----IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESR 327 (985)
Q Consensus 257 ~~~~~~~~~~i~~~l-----~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 327 (985)
.+..-...+.|...- ..+.......+++.+.+... ..++.-++|||+|+......++.++..+.......+
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~ 156 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLK 156 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeE
Confidence 011111111110000 00000112223322222111 124556899999988877788888888876656666
Q ss_pred EEEEcCc-hhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHH
Q 001993 328 ILVTTRN-EKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTL 401 (985)
Q Consensus 328 iivTtR~-~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 401 (985)
+|++|.+ ..+...+.. ....+++++++.++....+.+.+...+.. ...+....|++.++|.+--+..+
T Consensus 157 fIL~Ttd~~kil~TIlS-Rc~~~~f~~Ls~eei~~~L~~i~~~egi~-----ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 157 FVLATTDPQKVPVTVLS-RCLQFNLRPMAPETVLEHLTQVLAAENVP-----AEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred EEEEECCchhhhHHHHH-hceeeecCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 6665543 333222111 12689999999999999988776544321 11345788899999987655443
No 73
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=1.2e-05 Score=89.24 Aligned_cols=184 Identities=13% Similarity=0.122 Sum_probs=110.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhh---------------
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVR--------------- 243 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------------- 243 (985)
+++|-+.-++.|..++..+....++ .+..-..-+.++|++|+|||++|+.++..-.-.
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~-------~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAA-------AGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccc-------cCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 6889999999999999754310000 001135678899999999999999987621000
Q ss_pred ---ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHH
Q 001993 244 ---NHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQL 315 (985)
Q Consensus 244 ---~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l 315 (985)
+.++...++... ......+++.. +.+.. .+++-++|+|+++.......+.+
T Consensus 79 ~~~~~hpD~~~i~~~--------------------~~~i~i~~iR~-l~~~~~~~p~~~~~kViiIDead~m~~~aanaL 137 (394)
T PRK07940 79 VLAGTHPDVRVVAPE--------------------GLSIGVDEVRE-LVTIAARRPSTGRWRIVVIEDADRLTERAANAL 137 (394)
T ss_pred HhcCCCCCEEEeccc--------------------cccCCHHHHHH-HHHHHHhCcccCCcEEEEEechhhcCHHHHHHH
Confidence 011111122110 01122233222 22222 24556888999988777777778
Q ss_pred HhhhcCCCCCcEEEEEcCch-hhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCC
Q 001993 316 LGCLRCGSKESRILVTTRNE-KVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGL 394 (985)
Q Consensus 316 ~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 394 (985)
...+.....+..+|++|.+. .+...+.. ....+.+.+++.++..+.+.+... . . .+.+..+++.++|.
T Consensus 138 Lk~LEep~~~~~fIL~a~~~~~llpTIrS-Rc~~i~f~~~~~~~i~~~L~~~~~---~--~-----~~~a~~la~~s~G~ 206 (394)
T PRK07940 138 LKAVEEPPPRTVWLLCAPSPEDVLPTIRS-RCRHVALRTPSVEAVAEVLVRRDG---V--D-----PETARRAARASQGH 206 (394)
T ss_pred HHHhhcCCCCCeEEEEECChHHChHHHHh-hCeEEECCCCCHHHHHHHHHHhcC---C--C-----HHHHHHHHHHcCCC
Confidence 88887666667666666653 33322211 236899999999999988874321 1 1 24477889999999
Q ss_pred hhHHHHH
Q 001993 395 PLAVKTL 401 (985)
Q Consensus 395 PLai~~~ 401 (985)
|.....+
T Consensus 207 ~~~A~~l 213 (394)
T PRK07940 207 IGRARRL 213 (394)
T ss_pred HHHHHHH
Confidence 9755433
No 74
>PRK08727 hypothetical protein; Validated
Probab=98.35 E-value=1.4e-05 Score=82.97 Aligned_cols=149 Identities=16% Similarity=0.143 Sum_probs=90.3
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
..+.|+|..|+|||+|++.+++. .......++|+++.+ ....+. ..+ +.+ .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~-----------------~~~-~~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR-----------------DAL-EAL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH-----------------HHH-HHH-hcC
Confidence 45999999999999999999883 333334566776432 111111 111 111 233
Q ss_pred EEEEecCCCCCC-cccHHH-HHhhhcC-CCCCcEEEEEcCchh---------hHHhhcCcccccccCCCCChHHHHHHHH
Q 001993 297 FFLVLDDVWTEE-PQNWEQ-LLGCLRC-GSKESRILVTTRNEK---------VAIAIGTTKFNIIPIELLSDEDCWSIFS 364 (985)
Q Consensus 297 ~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~~~l~~L~~~e~~~Lf~ 364 (985)
-+||+||+.... ...|.. +...+.. ..+|..||+|++... +...+... ..+++++++.++-.+++.
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~--~~~~l~~~~~e~~~~iL~ 172 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQC--IRIGLPVLDDVARAAVLR 172 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcC--ceEEecCCCHHHHHHHHH
Confidence 589999996432 123433 3333221 124567999998532 22222223 588999999999999999
Q ss_pred HHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHH
Q 001993 365 QLALSRRLDIEESENFENIGRQIVSKCKGLPLAVK 399 (985)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 399 (985)
+++...+.. --++....|++.++|-.-.+.
T Consensus 173 ~~a~~~~l~-----l~~e~~~~La~~~~rd~r~~l 202 (233)
T PRK08727 173 ERAQRRGLA-----LDEAAIDWLLTHGERELAGLV 202 (233)
T ss_pred HHHHHcCCC-----CCHHHHHHHHHhCCCCHHHHH
Confidence 877544321 123557788888887666553
No 75
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=1e-05 Score=92.98 Aligned_cols=195 Identities=14% Similarity=0.198 Sum_probs=111.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.+..++.+.+++..+. ....+.++|+.|+||||+|+.++.. .. |.-|... ..+
T Consensus 17 dIIGQe~iv~~L~~aI~~~r----------------l~hA~Lf~GP~GvGKTTlA~~lAk~--L~----C~~~~~~-~~C 73 (605)
T PRK05896 17 QIIGQELIKKILVNAILNNK----------------LTHAYIFSGPRGIGKTSIAKIFAKA--IN----CLNPKDG-DCC 73 (605)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCceEEEECCCCCCHHHHHHHHHHH--hc----CCCCCCC-CCC
Confidence 78999999999999886432 3467889999999999999999862 21 1112110 011
Q ss_pred CHHHHHHHHHHHhcC-----CCCCCCCHHHHHHHHHHH----hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEE
Q 001993 259 DDIRIAKAILESLKG-----SATNAVESETVLKQLRES----IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRIL 329 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 329 (985)
..-...+.+...... ........+++...+... ..+++-++|+|+++......++.++..+........+|
T Consensus 74 g~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfI 153 (605)
T PRK05896 74 NSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFI 153 (605)
T ss_pred cccHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEE
Confidence 111111111111000 000111222222211110 12344479999998766677888888887655566666
Q ss_pred EEcC-chhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChh-HHHHHH
Q 001993 330 VTTR-NEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPL-AVKTLG 402 (985)
Q Consensus 330 vTtR-~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~ 402 (985)
++|. ...+...+.. ....+++.+++.++....+...+...+.. .+ .+.+..+++.++|.+- |+..+-
T Consensus 154 L~Tt~~~KLl~TI~S-Rcq~ieF~~Ls~~eL~~~L~~il~kegi~--Is---~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 154 FATTEFQKIPLTIIS-RCQRYNFKKLNNSELQELLKSIAKKEKIK--IE---DNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred EECCChHhhhHHHHh-hhhhcccCCCCHHHHHHHHHHHHHHcCCC--CC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 5553 3333222111 12689999999999998888766433221 11 2457789999999665 444333
No 76
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=9.2e-06 Score=93.61 Aligned_cols=183 Identities=13% Similarity=0.171 Sum_probs=112.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhh----------------
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEV---------------- 242 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---------------- 242 (985)
++||-+..++.|.+++..+. -...+.++|+.|+||||+|+.++..-.-
T Consensus 17 divGq~~v~~~L~~~~~~~~----------------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 80 (509)
T PRK14958 17 EVIGQAPVVRALSNALDQQY----------------LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCR 80 (509)
T ss_pred HhcCCHHHHHHHHHHHHhCC----------------CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHH
Confidence 78999999999999997432 3456789999999999999998763110
Q ss_pred ---hccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhh
Q 001993 243 ---RNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCL 319 (985)
Q Consensus 243 ---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l 319 (985)
.+.|..++.+..+....+.++ +.+++.+... -..++.-++|+|+|+.......+.++..+
T Consensus 81 ~i~~g~~~d~~eidaas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~L 143 (509)
T PRK14958 81 EIDEGRFPDLFEVDAASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTL 143 (509)
T ss_pred HHhcCCCceEEEEcccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHH
Confidence 011222333332222222211 1222211110 11356678999999887777888888888
Q ss_pred cCCCCCcEEEEEcCch-hhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001993 320 RCGSKESRILVTTRNE-KVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 320 ~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 398 (985)
......+++|++|.+. .+...+. .....+++.+++.++....+.+.+...+.. -..+....|++.++|.+.-+
T Consensus 144 Eepp~~~~fIlattd~~kl~~tI~-SRc~~~~f~~l~~~~i~~~l~~il~~egi~-----~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 144 EEPPSHVKFILATTDHHKLPVTVL-SRCLQFHLAQLPPLQIAAHCQHLLKEENVE-----FENAALDLLARAANGSVRDA 217 (509)
T ss_pred hccCCCeEEEEEECChHhchHHHH-HHhhhhhcCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCcHHHH
Confidence 7766667777665443 3222211 112578999999999887776665433221 11244678889999987644
Q ss_pred HH
Q 001993 399 KT 400 (985)
Q Consensus 399 ~~ 400 (985)
..
T Consensus 218 l~ 219 (509)
T PRK14958 218 LS 219 (509)
T ss_pred HH
Confidence 43
No 77
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.34 E-value=1e-05 Score=95.68 Aligned_cols=202 Identities=19% Similarity=0.217 Sum_probs=119.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccC---CceEEEEeC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHF---NEKIWVCVS 255 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s 255 (985)
+++|++..+..+.+.+.. +....+.|+|++|+||||+|+.+++.......+ ...-|+.+.
T Consensus 155 ~iiGqs~~~~~l~~~ia~-----------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 155 EIVGQERAIKALLAKVAS-----------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred hceeCcHHHHHHHHHHhc-----------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 689999999998877752 234579999999999999999998753332322 123455443
Q ss_pred C---CCCHHHHHHHH---------------HHHhcCC------------------CCCCCCHHHHHHHHHHHhcCceEEE
Q 001993 256 E---PFDDIRIAKAI---------------LESLKGS------------------ATNAVESETVLKQLRESIEGKKFFL 299 (985)
Q Consensus 256 ~---~~~~~~~~~~i---------------~~~l~~~------------------~~~~~~~~~~~~~l~~~l~~k~~Ll 299 (985)
. ..+...+...+ +...+.. ..+..+ ...+..+.+.++.+++.+
T Consensus 218 ~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~ 296 (615)
T TIGR02903 218 GTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEF 296 (615)
T ss_pred chhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEe
Confidence 2 11222221111 1111100 011111 234667778888889988
Q ss_pred EecCCCCCCcccHHHHHhhhcCCCCCcEEEE--EcCchhh-HHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCccc
Q 001993 300 VLDDVWTEEPQNWEQLLGCLRCGSKESRILV--TTRNEKV-AIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEE 376 (985)
Q Consensus 300 VlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv--TtR~~~v-~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~ 376 (985)
+-|+.|..+...|+.+...+....+...|++ ||++... ...+.. ....+.+.+++.+|.++++++.+..... ..
T Consensus 297 ~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS-R~~~i~~~pls~edi~~Il~~~a~~~~v--~l 373 (615)
T TIGR02903 297 SSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS-RCAEVFFEPLTPEDIALIVLNAAEKINV--HL 373 (615)
T ss_pred ecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh-ceeEEEeCCCCHHHHHHHHHHHHHHcCC--CC
Confidence 8887877666678887766665555555555 5665432 212111 1246788999999999999987643221 11
Q ss_pred chhHHHHHHHHHHhcCCChhHHHHHHhh
Q 001993 377 SENFENIGRQIVSKCKGLPLAVKTLGSL 404 (985)
Q Consensus 377 ~~~~~~~~~~i~~~c~GlPLai~~~~~~ 404 (985)
. .++...|++.+..-+-|+..++..
T Consensus 374 s---~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 374 A---AGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred C---HHHHHHHHHCCCcHHHHHHHHHHH
Confidence 1 234555555555445555555443
No 78
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.5e-05 Score=90.93 Aligned_cols=188 Identities=22% Similarity=0.269 Sum_probs=108.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhc--------------
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRN-------------- 244 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------- 244 (985)
+++|.+...+.|...+..+. -...+.++|++|+||||+|+.+++.-.-..
T Consensus 15 divGq~~i~~~L~~~i~~~~----------------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~ 78 (472)
T PRK14962 15 EVVGQDHVKKLIINALKKNS----------------ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACR 78 (472)
T ss_pred HccCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHH
Confidence 78999888888887776322 335689999999999999999987311000
Q ss_pred -----cCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhh
Q 001993 245 -----HFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCL 319 (985)
Q Consensus 245 -----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l 319 (985)
.+..++.++.+.......+ +.|.+.... .-..+++-++|+|+++.......+.++..+
T Consensus 79 ~i~~g~~~dv~el~aa~~~gid~i-R~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~L 141 (472)
T PRK14962 79 SIDEGTFMDVIELDAASNRGIDEI-RKIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTL 141 (472)
T ss_pred HHhcCCCCccEEEeCcccCCHHHH-HHHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHH
Confidence 0111222222211111111 111111100 012356779999999765555566777777
Q ss_pred cCCCCCcEEEEEcCc-hhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCC-ChhH
Q 001993 320 RCGSKESRILVTTRN-EKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKG-LPLA 397 (985)
Q Consensus 320 ~~~~~gs~iivTtR~-~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLa 397 (985)
........+|++|.+ ..+...+.. ....+++.+++.++....+.+.+...+.. -..+....|++.++| ++.|
T Consensus 142 E~p~~~vv~Ilattn~~kl~~~L~S-R~~vv~f~~l~~~el~~~L~~i~~~egi~-----i~~eal~~Ia~~s~GdlR~a 215 (472)
T PRK14962 142 EEPPSHVVFVLATTNLEKVPPTIIS-RCQVIEFRNISDELIIKRLQEVAEAEGIE-----IDREALSFIAKRASGGLRDA 215 (472)
T ss_pred HhCCCcEEEEEEeCChHhhhHHHhc-CcEEEEECCccHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHhCCCHHHH
Confidence 654444555544443 333333222 13688999999999999888876443221 113457778887765 4566
Q ss_pred HHHHHhhh
Q 001993 398 VKTLGSLL 405 (985)
Q Consensus 398 i~~~~~~L 405 (985)
+..+-.+.
T Consensus 216 ln~Le~l~ 223 (472)
T PRK14962 216 LTMLEQVW 223 (472)
T ss_pred HHHHHHHH
Confidence 66665443
No 79
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.32 E-value=7.7e-06 Score=97.60 Aligned_cols=174 Identities=21% Similarity=0.306 Sum_probs=98.6
Q ss_pred ceecchhhHH---HHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeC
Q 001993 179 EIRGRNHLQN---KVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVS 255 (985)
Q Consensus 179 ~~vGr~~~~~---~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 255 (985)
+|+|.+..+. .+...+. ......+.|+|++|+||||+|+.+++ ....+|. .++.+
T Consensus 29 d~vGQe~ii~~~~~L~~~i~-----------------~~~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~---~lna~ 86 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIK-----------------ADRVGSLILYGPPGVGKTTLARIIAN--HTRAHFS---SLNAV 86 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHh-----------------cCCCceEEEECCCCCCHHHHHHHHHH--HhcCcce---eehhh
Confidence 6889887764 4555554 23445678999999999999999997 3444431 11111
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh--cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEE--
Q 001993 256 EPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI--EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVT-- 331 (985)
Q Consensus 256 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT-- 331 (985)
. ... .+..+......+.+ .+++.+|||||++......++.+...+. .|+.++|+
T Consensus 87 ~-~~i------------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aT 144 (725)
T PRK13341 87 L-AGV------------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGAT 144 (725)
T ss_pred h-hhh------------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEec
Confidence 0 000 01111122222222 2467899999998766666666766554 35555553
Q ss_pred cCchh--hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCC--CcccchhHHHHHHHHHHhcCCChhH
Q 001993 332 TRNEK--VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRL--DIEESENFENIGRQIVSKCKGLPLA 397 (985)
Q Consensus 332 tR~~~--v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~--~~~~~~~~~~~~~~i~~~c~GlPLa 397 (985)
|.+.. +...... ....+.+++++.++...++.+.+..... ......-.++....|++.+.|.--.
T Consensus 145 Tenp~~~l~~aL~S-R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ 213 (725)
T PRK13341 145 TENPYFEVNKALVS-RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARS 213 (725)
T ss_pred CCChHhhhhhHhhc-cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHH
Confidence 33321 1111111 1257899999999999999876541000 0001111235567788888886543
No 80
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.32 E-value=1.2e-07 Score=92.01 Aligned_cols=129 Identities=28% Similarity=0.305 Sum_probs=47.1
Q ss_pred CCCCCCeEEEeeccCCCCCCCChhhh-ccccccEEeEeccCCCCcCCCCCCCCccceeeccCCCCceEeCCcccCCchhh
Q 001993 787 PPSSLEKLGIYGYAGDTISPTSDWML-SLAKLRVLTLRFCNECECLPPLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDH 865 (985)
Q Consensus 787 ~~~~L~~L~l~~~~~~~~~~~p~~~~-~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~ 865 (985)
.+..++.|++.|+.+..+ ..++ .+.+|+.|+|++| .++.++.+..+++|+.|+++++. ++.++..+.
T Consensus 17 n~~~~~~L~L~~n~I~~I----e~L~~~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~------ 84 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI----ENLGATLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSNNR-ISSISEGLD------ 84 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHH------
T ss_pred cccccccccccccccccc----cchhhhhcCCCEEECCCC-CCccccCccChhhhhhcccCCCC-CCccccchH------
Confidence 345678888888877665 3454 5788999999988 56677788888999999998843 666543211
Q ss_pred hhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeecccccCCCCC----CCCCCCCCcC
Q 001993 866 QARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALP----DYILGSTSLD 941 (985)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp----~~~~~l~~L~ 941 (985)
..||+|++|.+.+ +++.++.... ....+|+|+.|++.++|--.. + ..+..+|+|+
T Consensus 85 ----------------~~lp~L~~L~L~~-N~I~~l~~l~---~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk 143 (175)
T PF14580_consen 85 ----------------KNLPNLQELYLSN-NKISDLNELE---PLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLK 143 (175)
T ss_dssp ----------------HH-TT--EEE-TT-S---SCCCCG---GGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-S
T ss_pred ----------------HhCCcCCEEECcC-CcCCChHHhH---HHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhh
Confidence 2478999999876 4455554432 344789999999988875432 3 2245677888
Q ss_pred eEEecCc
Q 001993 942 KLLIYYS 948 (985)
Q Consensus 942 ~L~i~~c 948 (985)
.||-...
T Consensus 144 ~LD~~~V 150 (175)
T PF14580_consen 144 VLDGQDV 150 (175)
T ss_dssp EETTEET
T ss_pred eeCCEEc
Confidence 7764433
No 81
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=2.8e-05 Score=90.37 Aligned_cols=180 Identities=16% Similarity=0.224 Sum_probs=110.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhh---------------
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVR--------------- 243 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------------- 243 (985)
+++|-+..++.+..++..+. -...+.++|+.|+||||+|+.++..-.-.
T Consensus 17 divGq~~v~~~L~~~i~~~~----------------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~ 80 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQQR----------------LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80 (527)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 78999999999999887432 33567899999999999999997631100
Q ss_pred ----ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hcCceEEEEecCCCCCCcccHHHH
Q 001993 244 ----NHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRES----IEGKKFFLVLDDVWTEEPQNWEQL 315 (985)
Q Consensus 244 ----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l 315 (985)
+.|...+++..+.. ...+++...+... ..+++-++|+|+++.......+.+
T Consensus 81 ~i~~~~~~d~~ei~~~~~---------------------~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naL 139 (527)
T PRK14969 81 EIDSGRFVDLIEVDAASN---------------------TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAM 139 (527)
T ss_pred HHhcCCCCceeEeecccc---------------------CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHH
Confidence 01112222222111 1222222111111 135677999999987766677888
Q ss_pred HhhhcCCCCCcEEEEEcCch-hhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCC
Q 001993 316 LGCLRCGSKESRILVTTRNE-KVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGL 394 (985)
Q Consensus 316 ~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 394 (985)
+..+......+.+|++|.+. .+...+. .....+++.+++.++....+.+.+...+.. ...+....|++.++|.
T Consensus 140 LK~LEepp~~~~fIL~t~d~~kil~tI~-SRc~~~~f~~l~~~~i~~~L~~il~~egi~-----~~~~al~~la~~s~Gs 213 (527)
T PRK14969 140 LKTLEEPPEHVKFILATTDPQKIPVTVL-SRCLQFNLKQMPPPLIVSHLQHILEQENIP-----FDATALQLLARAAAGS 213 (527)
T ss_pred HHHHhCCCCCEEEEEEeCChhhCchhHH-HHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCC
Confidence 88887766666666666443 2221111 112689999999999998887765433221 1134567889999997
Q ss_pred hh-HHHHH
Q 001993 395 PL-AVKTL 401 (985)
Q Consensus 395 PL-ai~~~ 401 (985)
+- |+..+
T Consensus 214 lr~al~ll 221 (527)
T PRK14969 214 MRDALSLL 221 (527)
T ss_pred HHHHHHHH
Confidence 75 44333
No 82
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.29 E-value=2.6e-05 Score=87.45 Aligned_cols=184 Identities=15% Similarity=0.187 Sum_probs=111.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhh--hc------------
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEV--RN------------ 244 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~------------ 244 (985)
+++|.+..++.+.+++..+. -...+.++|++|+||||+|+.++..-.- ..
T Consensus 15 ~iig~~~~~~~l~~~~~~~~----------------~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~ 78 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKNGR----------------IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCK 78 (355)
T ss_pred hccCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 68999999999999886432 3457889999999999999888763110 00
Q ss_pred ------cCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhh
Q 001993 245 ------HFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGC 318 (985)
Q Consensus 245 ------~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~ 318 (985)
+++ .+++........ ...+++...+... -..+++-++|+|++........+.+...
T Consensus 79 ~~~~~~~~~-~~~~~~~~~~~~-~~~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~ 140 (355)
T TIGR02397 79 EINSGSSLD-VIEIDAASNNGV-DDIREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKT 140 (355)
T ss_pred HHhcCCCCC-EEEeeccccCCH-HHHHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHH
Confidence 111 122221111110 1111122211100 0124556899999966555567778887
Q ss_pred hcCCCCCcEEEEEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhH
Q 001993 319 LRCGSKESRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLA 397 (985)
Q Consensus 319 l~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 397 (985)
+......+.+|++|.+.. +...+.. ....+++.+++.++....+...+...+.. . ..+.+..+++.++|.|..
T Consensus 141 le~~~~~~~lIl~~~~~~~l~~~l~s-r~~~~~~~~~~~~~l~~~l~~~~~~~g~~--i---~~~a~~~l~~~~~g~~~~ 214 (355)
T TIGR02397 141 LEEPPEHVVFILATTEPHKIPATILS-RCQRFDFKRIPLEDIVERLKKILDKEGIK--I---EDEALELIARAADGSLRD 214 (355)
T ss_pred HhCCccceeEEEEeCCHHHHHHHHHh-heeEEEcCCCCHHHHHHHHHHHHHHcCCC--C---CHHHHHHHHHHcCCChHH
Confidence 765556667777765543 2222211 12578889999999998888766443321 1 135678889999998876
Q ss_pred HHHHH
Q 001993 398 VKTLG 402 (985)
Q Consensus 398 i~~~~ 402 (985)
+....
T Consensus 215 a~~~l 219 (355)
T TIGR02397 215 ALSLL 219 (355)
T ss_pred HHHHH
Confidence 65443
No 83
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.28 E-value=1.2e-06 Score=90.78 Aligned_cols=90 Identities=19% Similarity=0.174 Sum_probs=62.9
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC--CCHHHHHHHHHHHhcCCCCCCCCHH------HHHH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP--FDDIRIAKAILESLKGSATNAVESE------TVLK 286 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 286 (985)
....++|+|++|+|||||++.++++.... +|+.++|+.+... +++.++++.+...+-....+..... ....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999964433 8999999997766 7899999999444332222222111 1122
Q ss_pred HHHHH-hcCceEEEEecCCC
Q 001993 287 QLRES-IEGKKFFLVLDDVW 305 (985)
Q Consensus 287 ~l~~~-l~~k~~LlVlDdv~ 305 (985)
..... -.++++++++|++.
T Consensus 94 ~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHCCCCEEEEEECHH
Confidence 22222 25899999999994
No 84
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.27 E-value=7.4e-07 Score=101.57 Aligned_cols=105 Identities=35% Similarity=0.420 Sum_probs=84.4
Q ss_pred hccCCcceeecCC--CCCCCCcccccCC-CCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccc
Q 001993 600 FDRLTCLRSIDGL--PVGQIPKGIKKLI-HLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLR 676 (985)
Q Consensus 600 ~~~l~~Lr~L~l~--~~~~lp~~i~~l~-~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~ 676 (985)
...++.+..|++. .+..+|..++.+. +|++|++++|. +..+|..++.+++|+.|++++|. +..+|...+.+++|+
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhh
Confidence 3445778888887 7888888888885 99999999998 88998888999999999999988 888888777889999
Q ss_pred eeecccccccccccCCCcCCCCCCCCccCceEe
Q 001993 677 HLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVA 709 (985)
Q Consensus 677 ~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~ 709 (985)
.|++++|.. ..+|..++.+..|++|.+..+
T Consensus 190 ~L~ls~N~i---~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 190 NLDLSGNKI---SDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred heeccCCcc---ccCchhhhhhhhhhhhhhcCC
Confidence 999986544 567776666667777776544
No 85
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.26 E-value=1.4e-06 Score=93.07 Aligned_cols=238 Identities=20% Similarity=0.203 Sum_probs=155.5
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF-DDIRIAKAILESLKGSATNAVESETVLKQLRESI 292 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 292 (985)
...+.|.++|.|||||||++-.+.. +...|....|+.--.+. +...+.-.+...+..... +-+.....+....
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~---~g~~~~~~~~~~~ 85 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ---PGDSAVDTLVRRI 85 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc---cchHHHHHHHHHH
Confidence 3567999999999999999988886 66678765554444444 444444444444544321 1233444566677
Q ss_pred cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchhhHHhhcCcccccccCCCCChH-HHHHHHHHHhcCCC
Q 001993 293 EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEKVAIAIGTTKFNIIPIELLSDE-DCWSIFSQLALSRR 371 (985)
Q Consensus 293 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~~~l~~L~~~-e~~~Lf~~~~~~~~ 371 (985)
.++|.++|+||-.+. .+.-..+...+..+...-.|+.|+|...... . .....+.+|+.. ++.++|...+....
T Consensus 86 ~~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~~---g--e~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 86 GDRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILVA---G--EVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred hhhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhccc---c--cccccCCccccCCchhHHHHHHHHHhc
Confidence 889999999998321 1112223334444444556888888654321 1 256778888765 78889887765544
Q ss_pred CCcccchhHHHHHHHHHHhcCCChhHHHHHHhhhhcCCChHHHHHHHHhhhhhhhcc-------ccccchhhhcccCCCC
Q 001993 372 LDIEESENFENIGRQIVSKCKGLPLAVKTLGSLLRFKGKIEEWQRVLENELWELEEL-------DEGLLGPLLLSYLDLP 444 (985)
Q Consensus 372 ~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~~~w~~~~~~~~~~~~~~-------~~~~~~~l~~sy~~L~ 444 (985)
........-...+.+|.++.+|.|++|..+++..+.- ...+-...+.+....+.+. .+.....+.+||.-|.
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLt 238 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLT 238 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhh
Confidence 3333444556778999999999999999999988644 3333333333332222222 2446788999999999
Q ss_pred cchhHHHhhhccCCCCcccC
Q 001993 445 PPLKKCFSYCAIFPKDSRLE 464 (985)
Q Consensus 445 ~~~k~cfl~~a~fp~~~~i~ 464 (985)
...+--|.-++.|...+...
T Consensus 239 gwe~~~~~rLa~~~g~f~~~ 258 (414)
T COG3903 239 GWERALFGRLAVFVGGFDLG 258 (414)
T ss_pred hHHHHHhcchhhhhhhhccc
Confidence 99999999999998776544
No 86
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.26 E-value=1.8e-05 Score=82.31 Aligned_cols=152 Identities=16% Similarity=0.197 Sum_probs=89.9
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGK 295 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 295 (985)
...+.|+|..|+|||+||+.+++... ... ...++++..+... . + .. ...
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~~------~----~------------------~~-~~~ 90 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPLL------A----F------------------DF-DPE 90 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhHH------H----H------------------hh-ccc
Confidence 45789999999999999999998421 222 2344555433110 0 0 01 123
Q ss_pred eEEEEecCCCCCCcccHHHHHhhhcCC-CCCc-EEEEEcCchhhHH--------hhcCcccccccCCCCChHHHHHHHHH
Q 001993 296 KFFLVLDDVWTEEPQNWEQLLGCLRCG-SKES-RILVTTRNEKVAI--------AIGTTKFNIIPIELLSDEDCWSIFSQ 365 (985)
Q Consensus 296 ~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~iivTtR~~~v~~--------~~~~~~~~~~~l~~L~~~e~~~Lf~~ 365 (985)
.-+||+||+...+...-..+...+... ..+. .||+|++...... .+... ..+++.++++++-..++.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~--~~i~l~pl~~~~~~~~l~~ 168 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWG--LVYELKPLSDADKIAALKA 168 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcC--eEEEecCCCHHHHHHHHHH
Confidence 347899999654433333454444321 2333 4667766433211 22212 5789999999887777776
Q ss_pred HhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhh
Q 001993 366 LALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLL 405 (985)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L 405 (985)
.+...+.. . .+++...+++.+.|.+..+..+...+
T Consensus 169 ~~~~~~v~--l---~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 169 AAAERGLQ--L---ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHcCCC--C---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 54332221 1 23567788888999999887776665
No 87
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=2.2e-05 Score=88.48 Aligned_cols=199 Identities=15% Similarity=0.227 Sum_probs=113.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEE-eCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVC-VSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~s~~ 257 (985)
+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.-.-...+....|.. ....
T Consensus 17 eiiGq~~~~~~L~~~~~~~~----------------~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~ 80 (397)
T PRK14955 17 DITAQEHITRTIQNSLRMGR----------------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEP 80 (397)
T ss_pred hccChHHHHHHHHHHHHhCC----------------cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCC
Confidence 68999998888888886332 234688999999999999999887311111011111110 0011
Q ss_pred CCHHHHHHHHHHHhcC-----CCCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcE
Q 001993 258 FDDIRIAKAILESLKG-----SATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESR 327 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 327 (985)
+..-..-+.+...... ........+++.+ +.+.+ .+++-++|+|++.......++.+...+......+.
T Consensus 81 c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~ 159 (397)
T PRK14955 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAI 159 (397)
T ss_pred CCCCHHHHHHhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeE
Confidence 1111111111111000 0001112333332 22222 35666899999977666678888888876666777
Q ss_pred EEEEc-CchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHH
Q 001993 328 ILVTT-RNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKT 400 (985)
Q Consensus 328 iivTt-R~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 400 (985)
+|++| +...+...+.. ....+++.+++.++....+...+...+.. -..+.+..|++.++|.+--+..
T Consensus 160 ~Il~t~~~~kl~~tl~s-R~~~v~f~~l~~~ei~~~l~~~~~~~g~~-----i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 160 FIFATTELHKIPATIAS-RCQRFNFKRIPLEEIQQQLQGICEAEGIS-----VDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred EEEEeCChHHhHHHHHH-HHHHhhcCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHH
Confidence 66555 43333322211 12578999999999988888765432211 1235688899999997754433
No 88
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.23 E-value=2e-05 Score=85.14 Aligned_cols=214 Identities=15% Similarity=0.166 Sum_probs=133.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++||+.|++.+.+++...-+ ....+.+.|.|-+|.|||.+...++.+..-...=..++++++..--
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle-------------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~ 217 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLE-------------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLT 217 (529)
T ss_pred CccchHHHHHHHHHHHHhhhh-------------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecccc
Confidence 799999999999999985542 3456789999999999999999999853222221345788777767
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC--ceEEEEecCCCCCCcccHHHHHhhhcC-CCCCcEEEEEcCch
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEG--KKFFLVLDDVWTEEPQNWEQLLGCLRC-GSKESRILVTTRNE 335 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtR~~ 335 (985)
...+++..|...+...........+....+.+..++ +.+|+|+|..+.-....-..+...|.| .-+++|+|+.---.
T Consensus 218 ~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiAN 297 (529)
T KOG2227|consen 218 EASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIAN 297 (529)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehh
Confidence 788888888888833222222224455566666643 369999999854322222223333332 23455655442211
Q ss_pred --hhHH----hhc---CcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhh
Q 001993 336 --KVAI----AIG---TTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLL 405 (985)
Q Consensus 336 --~v~~----~~~---~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L 405 (985)
+... .+. ...+..+...|.+.++..++|..+..........+...+-.|++++.-.|.+--|+.+.-+.+
T Consensus 298 slDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 298 SLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred hhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 1110 111 122467889999999999999998765544323334455555555555566666666555544
No 89
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.23 E-value=4e-05 Score=79.75 Aligned_cols=156 Identities=18% Similarity=0.177 Sum_probs=93.7
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGK 295 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 295 (985)
...+.|+|+.|+|||+|++.+++. ....-..+.++++..... ...++. +.+..
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~--------------------~~~~~~----~~~~~- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW--------------------FVPEVL----EGMEQ- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh--------------------hhHHHH----HHhhh-
Confidence 357899999999999999999983 333333466776533100 001111 11111
Q ss_pred eEEEEecCCCCCC-cccHHH-HHhhhcCC-CCC-cEEEEEcCch---------hhHHhhcCcccccccCCCCChHHHHHH
Q 001993 296 KFFLVLDDVWTEE-PQNWEQ-LLGCLRCG-SKE-SRILVTTRNE---------KVAIAIGTTKFNIIPIELLSDEDCWSI 362 (985)
Q Consensus 296 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~g-s~iivTtR~~---------~v~~~~~~~~~~~~~l~~L~~~e~~~L 362 (985)
--+|++||+.... ...|+. +...+... ..| .++|+||+.. ++...+... .++++.++++++-.++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g--~~~~l~~~~~~~~~~~ 175 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWG--QIYKLQPLSDEEKLQA 175 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCC--ceeeecCCCHHHHHHH
Confidence 2478999996432 234543 32333211 123 3799998854 233344444 6899999999999999
Q ss_pred HHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhh
Q 001993 363 FSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLL 405 (985)
Q Consensus 363 f~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L 405 (985)
+.+++...+. .. -+++..-|++.+.|..-++..+-..+
T Consensus 176 l~~~a~~~~~--~l---~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 176 LQLRARLRGF--EL---PEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHHHcCC--CC---CHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 9886654432 12 24567788888888776665544444
No 90
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.22 E-value=3.6e-05 Score=80.22 Aligned_cols=200 Identities=16% Similarity=0.150 Sum_probs=120.0
Q ss_pred hhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhh----ccCCceEEEEeCCCCCH
Q 001993 185 HLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVR----NHFNEKIWVCVSEPFDD 260 (985)
Q Consensus 185 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~ 260 (985)
..++++.+++..+. ..+...+.|+|..|.|||++++++....-.. ..--.++.|.+...++.
T Consensus 44 ~~L~~L~~Ll~~P~--------------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~ 109 (302)
T PF05621_consen 44 EALDRLEELLEYPK--------------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDE 109 (302)
T ss_pred HHHHHHHHHHhCCc--------------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCCh
Confidence 45566666666444 4677889999999999999999998642111 01114667888889999
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC-ceEEEEecCCCCCC------cccHHHHHhhhcCCCCCcEEEEEcC
Q 001993 261 IRIAKAILESLKGSATNAVESETVLKQLRESIEG-KKFFLVLDDVWTEE------PQNWEQLLGCLRCGSKESRILVTTR 333 (985)
Q Consensus 261 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~------~~~~~~l~~~l~~~~~gs~iivTtR 333 (985)
..++..|+.+++...........+.....+.++. +.-+||+|++.+.- ....-.....+.+.-.-+-|.+-|+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 9999999999998766666666666666666643 45688999996521 1222233344433334455666666
Q ss_pred chhhHHhhcC---cccccccCCCCCh-HHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001993 334 NEKVAIAIGT---TKFNIIPIELLSD-EDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 334 ~~~v~~~~~~---~~~~~~~l~~L~~-~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 398 (985)
..--+-..+. ..+..+.+..-.. +|...|+......-.......-...++++.|...++|+.=-+
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 4332211111 1124566665544 344455543221111100111234678999999999986433
No 91
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.20 E-value=8.4e-07 Score=86.23 Aligned_cols=82 Identities=32% Similarity=0.345 Sum_probs=24.3
Q ss_pred CCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhh-hhccccceeecccccccccccCCCcCCCCCCCC
Q 001993 624 LIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERI-GQLINLRHLMNSKEEWSRLSYMPRGMERLTGLR 702 (985)
Q Consensus 624 l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i-~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~ 702 (985)
+.+|+.|+|++|. |+.++. +..|++|++|++++|. +..++..+ ..+++|++|++++|....+..+ ..+..+++|+
T Consensus 41 l~~L~~L~Ls~N~-I~~l~~-l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l-~~L~~l~~L~ 116 (175)
T PF14580_consen 41 LDKLEVLDLSNNQ-ITKLEG-LPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYLSNNKISDLNEL-EPLSSLPKLR 116 (175)
T ss_dssp -TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCC-GGGGG-TT--
T ss_pred hcCCCEEECCCCC-CccccC-ccChhhhhhcccCCCC-CCccccchHHhCCcCCEEECcCCcCCChHHh-HHHHcCCCcc
Confidence 4555556666555 555542 5555566666666555 55554434 2455666666655544333322 2234445555
Q ss_pred ccCceEe
Q 001993 703 TLGAFVA 709 (985)
Q Consensus 703 ~L~~~~~ 709 (985)
.|++.++
T Consensus 117 ~L~L~~N 123 (175)
T PF14580_consen 117 VLSLEGN 123 (175)
T ss_dssp EEE-TT-
T ss_pred eeeccCC
Confidence 5544433
No 92
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=4.1e-05 Score=88.62 Aligned_cols=197 Identities=16% Similarity=0.255 Sum_probs=113.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|-+..++.|..++..+. -...+.++|+.|+||||+|+.+++.-.-..... ...+
T Consensus 17 dIiGQe~v~~~L~~ai~~~r----------------i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pC 73 (624)
T PRK14959 17 EVAGQETVKAILSRAAQENR----------------VAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPC 73 (624)
T ss_pred HhcCCHHHHHHHHHHHHcCC----------------CCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCC
Confidence 68898888888888886322 246788999999999999999987321100000 0001
Q ss_pred CHHHHHHHHHHHhcC-----CCCCCCCHHHHHHHHHHH-----hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEE
Q 001993 259 DDIRIAKAILESLKG-----SATNAVESETVLKQLRES-----IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRI 328 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 328 (985)
..-...+.|...... ........+++. .+.+. ..+++-++|+|++.......++.|+..+........+
T Consensus 74 g~C~sC~~i~~g~hpDv~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~if 152 (624)
T PRK14959 74 NTCEQCRKVTQGMHVDVVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTF 152 (624)
T ss_pred cccHHHHHHhcCCCCceEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEE
Confidence 111111111111000 000011122221 12221 2356779999999877667778888888654455566
Q ss_pred EEEcCc-hhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh-hHHHHHHhhh
Q 001993 329 LVTTRN-EKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP-LAVKTLGSLL 405 (985)
Q Consensus 329 ivTtR~-~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~~L 405 (985)
|++|.. ..+...+. .....+++.+++.++....+...+...... -..+.+..|++.++|.+ .|+..+...+
T Consensus 153 ILaTt~~~kll~TI~-SRcq~i~F~pLs~~eL~~~L~~il~~egi~-----id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 153 VLATTEPHKFPVTIV-SRCQHFTFTRLSEAGLEAHLTKVLGREGVD-----YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred EEecCChhhhhHHHH-hhhhccccCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 665544 33332221 112578999999999998888766443321 12356788999999965 5666665544
No 93
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=3.9e-05 Score=92.88 Aligned_cols=190 Identities=17% Similarity=0.228 Sum_probs=111.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.-.-...... ..+
T Consensus 16 eiiGqe~v~~~L~~~i~~~r----------------i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pC 72 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGR----------------INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPC 72 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCC----------------CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCC
Confidence 68999999999999987432 3356889999999999999999763110000000 000
Q ss_pred CHHHHHHHHHHH-------hcCCCCCCCCHHHHHHHHHHH-----hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCc
Q 001993 259 DDIRIAKAILES-------LKGSATNAVESETVLKQLRES-----IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKES 326 (985)
Q Consensus 259 ~~~~~~~~i~~~-------l~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 326 (985)
..-...+.|... +..+.......+++.. +++. ..++.-++|||+++......++.|+..+......+
T Consensus 73 g~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~ 151 (824)
T PRK07764 73 GECDSCVALAPGGPGSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHL 151 (824)
T ss_pred cccHHHHHHHcCCCCCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCe
Confidence 000001111100 0000001112233222 2211 23566689999998888888888999998766666
Q ss_pred EEEEEcCc-hhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001993 327 RILVTTRN-EKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 327 ~iivTtR~-~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 398 (985)
.+|++|.+ ..+...+.. ....|++.+++.++...++.+.....+.. ...+....|++.++|.+..+
T Consensus 152 ~fIl~tt~~~kLl~TIrS-Rc~~v~F~~l~~~~l~~~L~~il~~EGv~-----id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 152 KFIFATTEPDKVIGTIRS-RTHHYPFRLVPPEVMRGYLERICAQEGVP-----VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred EEEEEeCChhhhhHHHHh-heeEEEeeCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHH
Confidence 66666543 333322211 12688999999999988887765333221 11244678899999988544
No 94
>PRK09087 hypothetical protein; Validated
Probab=98.16 E-value=4.5e-05 Score=78.53 Aligned_cols=145 Identities=16% Similarity=0.178 Sum_probs=88.4
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
+.+.|+|+.|+|||+|++.++... ...+++.. .+...++.. +.+
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~~---------------------~~~-- 88 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAANA---------------------AAE-- 88 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHHh---------------------hhc--
Confidence 568999999999999999888631 12244321 111111111 111
Q ss_pred EEEEecCCCCCCcccHHHHHhhhcC-CCCCcEEEEEcCc---------hhhHHhhcCcccccccCCCCChHHHHHHHHHH
Q 001993 297 FFLVLDDVWTEEPQNWEQLLGCLRC-GSKESRILVTTRN---------EKVAIAIGTTKFNIIPIELLSDEDCWSIFSQL 366 (985)
Q Consensus 297 ~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtR~---------~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 366 (985)
-+|++||+..... .-+.+...+.. ...|..||+|++. ++....+... .++++++++.++-.++++++
T Consensus 89 ~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~g--l~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 GPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAA--TVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred CeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCC--ceeecCCCCHHHHHHHHHHH
Confidence 2788899954221 12233333321 1335679999874 3344444444 68999999999999999988
Q ss_pred hcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhh
Q 001993 367 ALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLL 405 (985)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L 405 (985)
+...... . -+++..-|++++.|..-++..+-..|
T Consensus 166 ~~~~~~~--l---~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 166 FADRQLY--V---DPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHcCCC--C---CHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 7554321 1 24567788888888877766543333
No 95
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=5.9e-05 Score=87.76 Aligned_cols=198 Identities=16% Similarity=0.189 Sum_probs=114.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.++.. +.... ...+ ..+
T Consensus 14 eivGq~~i~~~L~~~i~~~r----------------~~ha~Lf~Gp~G~GKTt~A~~lAk~--l~c~~-~~~~----~pC 70 (584)
T PRK14952 14 EVVGQEHVTEPLSSALDAGR----------------INHAYLFSGPRGCGKTSSARILARS--LNCAQ-GPTA----TPC 70 (584)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHH--hcccc-CCCC----Ccc
Confidence 78999999999999987332 3456789999999999999999863 21100 0000 000
Q ss_pred CHHHHHHHHHHHhc-------CCCCCCCCHHHH---HHHHHHH-hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcE
Q 001993 259 DDIRIAKAILESLK-------GSATNAVESETV---LKQLRES-IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESR 327 (985)
Q Consensus 259 ~~~~~~~~i~~~l~-------~~~~~~~~~~~~---~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 327 (985)
..-...+.|...-. .+.......+++ ...+... ..+++-++|+|+++.......+.|+..+........
T Consensus 71 g~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~ 150 (584)
T PRK14952 71 GVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLI 150 (584)
T ss_pred cccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeE
Confidence 00011111110000 000011112222 2221111 135666999999988777788889888887666666
Q ss_pred EEEEc-CchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChh-HHHHHHhhh
Q 001993 328 ILVTT-RNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPL-AVKTLGSLL 405 (985)
Q Consensus 328 iivTt-R~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~~L 405 (985)
+|++| ....+...+... ...+++.+++.++..+.+.+.+...+.. -..+....|++.++|.+- |+..+-.++
T Consensus 151 fIL~tte~~kll~TI~SR-c~~~~F~~l~~~~i~~~L~~i~~~egi~-----i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 151 FIFATTEPEKVLPTIRSR-THHYPFRLLPPRTMRALIARICEQEGVV-----VDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred EEEEeCChHhhHHHHHHh-ceEEEeeCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 66555 444333322111 2689999999999988887765443321 113456778999999775 444444433
No 96
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=4.6e-05 Score=89.21 Aligned_cols=194 Identities=15% Similarity=0.204 Sum_probs=114.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCC----ceEEEEe
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFN----EKIWVCV 254 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~----~~~wv~~ 254 (985)
+++|.+..++.|.+++..+. -..-+.++|+.|+||||+|+.+++. +..... ...+
T Consensus 25 dliGq~~~v~~L~~~~~~gr----------------i~ha~L~~Gp~GvGKTt~Ar~lAk~--L~c~~~~~~~~~~~--- 83 (598)
T PRK09111 25 DLIGQEAMVRTLTNAFETGR----------------IAQAFMLTGVRGVGKTTTARILARA--LNYEGPDGDGGPTI--- 83 (598)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCceEEEECCCCCCHHHHHHHHHHh--hCcCCccccCCCcc---
Confidence 78999999999999987432 3457889999999999999999873 211110 0000
Q ss_pred CCCCCHHHHHHHHHHHhcC-----CCCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCC
Q 001993 255 SEPFDDIRIAKAILESLKG-----SATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSK 324 (985)
Q Consensus 255 s~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 324 (985)
+.+..-...+.|...... ........+++...+ +.+ .+++-++|+|++........+.++..+.....
T Consensus 84 -~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIi-e~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~ 161 (598)
T PRK09111 84 -DLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREII-ESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPP 161 (598)
T ss_pred -ccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHH-HHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCC
Confidence 000000111111111100 000112233322221 112 24566899999977766678888888876666
Q ss_pred CcEEEEEc-CchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHH
Q 001993 325 ESRILVTT-RNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTL 401 (985)
Q Consensus 325 gs~iivTt-R~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 401 (985)
.+.+|++| ....+...+.. ....+++.+++.++....+.+.+...+.. -..+....|++.++|.+.-+...
T Consensus 162 ~~~fIl~tte~~kll~tI~S-Rcq~~~f~~l~~~el~~~L~~i~~kegi~-----i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 162 HVKFIFATTEIRKVPVTVLS-RCQRFDLRRIEADVLAAHLSRIAAKEGVE-----VEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred CeEEEEEeCChhhhhHHHHh-heeEEEecCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 67766655 33333322211 12688999999999999988876443321 11256788999999988755443
No 97
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.16 E-value=4.4e-06 Score=90.00 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=62.0
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC--CHHHHHHHHHHHhcCCCCCCCCHHH------HHH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF--DDIRIAKAILESLKGSATNAVESET------VLK 286 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~------~~~ 286 (985)
.-+...|+|++|+||||||+++|++.... +|+.++||.+.+.. ++.++++.|...+-....+.....+ ...
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 44678999999999999999999964444 89999999998887 7778888876433222222222111 111
Q ss_pred HHHHH-hcCceEEEEecCCC
Q 001993 287 QLRES-IEGKKFFLVLDDVW 305 (985)
Q Consensus 287 ~l~~~-l~~k~~LlVlDdv~ 305 (985)
..... ..|++++|++|++.
T Consensus 247 ~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHcCCCEEEEEEChH
Confidence 11121 25899999999994
No 98
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.13 E-value=0.00014 Score=76.69 Aligned_cols=168 Identities=21% Similarity=0.273 Sum_probs=108.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.|.+|+.++..+...+...+ ..-++.|.|+|..|.|||.+.+.+++.. . ...+|+++-+.+
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~--------------~~~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecf 67 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNS--------------CTIPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECF 67 (438)
T ss_pred CccchHHHHHHHHHHhCCCC--------------cccceeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhc
Confidence 78899999999998887544 3356778999999999999999999843 1 246899999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCC--CH--HH---HHHHHHH--Hhc--CceEEEEecCCCCCC---cccHHHHHhhhcCCCC
Q 001993 259 DDIRIAKAILESLKGSATNAV--ES--ET---VLKQLRE--SIE--GKKFFLVLDDVWTEE---PQNWEQLLGCLRCGSK 324 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~--~~--~~---~~~~l~~--~l~--~k~~LlVlDdv~~~~---~~~~~~l~~~l~~~~~ 324 (985)
+...++..|+.+......+.. .. +. ....+.+ ... ++.++|||||++.-. ..-+..+...-.-...
T Consensus 68 t~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~ 147 (438)
T KOG2543|consen 68 TYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNE 147 (438)
T ss_pred cHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCC
Confidence 999999999999852222211 11 22 2222333 112 468999999995321 1111111111111122
Q ss_pred CcEEEEEcCchhhHHh---hcCcccccccCCCCChHHHHHHHHH
Q 001993 325 ESRILVTTRNEKVAIA---IGTTKFNIIPIELLSDEDCWSIFSQ 365 (985)
Q Consensus 325 gs~iivTtR~~~v~~~---~~~~~~~~~~l~~L~~~e~~~Lf~~ 365 (985)
..-+|+++........ +++....++....-+.+|..+++.+
T Consensus 148 ~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 148 PTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred CceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 2345555554433333 3555556778888999999998865
No 99
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.13 E-value=4.8e-05 Score=78.06 Aligned_cols=165 Identities=16% Similarity=0.242 Sum_probs=96.8
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCC--ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFN--EKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRES 291 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 291 (985)
.....+.|+|..|+|||.|.+.+++ ......+ .+++++ ..++...+...+... ..+ .+++.
T Consensus 32 ~~~~~l~l~G~~G~GKTHLL~Ai~~--~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~-----~~~----~~~~~ 94 (219)
T PF00308_consen 32 ERYNPLFLYGPSGLGKTHLLQAIAN--EAQKQHPGKRVVYLS------AEEFIREFADALRDG-----EIE----EFKDR 94 (219)
T ss_dssp TSSSEEEEEESTTSSHHHHHHHHHH--HHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT-----SHH----HHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHH--HHHhccccccceeec------HHHHHHHHHHHHHcc-----cch----hhhhh
Confidence 3445689999999999999999999 4433322 355664 345666666655431 122 23344
Q ss_pred hcCceEEEEecCCCCCCc-ccHHH-HHhhhcC-CCCCcEEEEEcCch---------hhHHhhcCcccccccCCCCChHHH
Q 001993 292 IEGKKFFLVLDDVWTEEP-QNWEQ-LLGCLRC-GSKESRILVTTRNE---------KVAIAIGTTKFNIIPIELLSDEDC 359 (985)
Q Consensus 292 l~~k~~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~~~l~~L~~~e~ 359 (985)
++ .-=+|++||++.... ..|.. +...+.. ...|.+||+|++.. ++...+... -++++++.++++-
T Consensus 95 ~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~G--l~~~l~~pd~~~r 171 (219)
T PF00308_consen 95 LR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWG--LVVELQPPDDEDR 171 (219)
T ss_dssp HC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCS--EEEEE----HHHH
T ss_pred hh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhc--chhhcCCCCHHHH
Confidence 44 344789999965332 22333 3333321 13466899999653 223334444 5899999999999
Q ss_pred HHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHh
Q 001993 360 WSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGS 403 (985)
Q Consensus 360 ~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 403 (985)
.+++.+++...+.. --++++.-|++.+.+..-.+..+-.
T Consensus 172 ~~il~~~a~~~~~~-----l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 172 RRILQKKAKERGIE-----LPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HHHHHHHHHHTT-------S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-----CcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 99999988665432 2245677777777766655544433
No 100
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.11 E-value=5.9e-07 Score=90.34 Aligned_cols=108 Identities=26% Similarity=0.271 Sum_probs=78.4
Q ss_pred cccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCCCC
Q 001993 756 LKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPPLG 835 (985)
Q Consensus 756 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~ 835 (985)
..-.+.++.|++++|+ ....+.++.+++|+.|++++|....+ -.|-..+-|.+.|.|++| .+++++.++
T Consensus 303 vKL~Pkir~L~lS~N~-------i~~v~nLa~L~~L~~LDLS~N~Ls~~---~Gwh~KLGNIKtL~La~N-~iE~LSGL~ 371 (490)
T KOG1259|consen 303 VKLAPKLRRLILSQNR-------IRTVQNLAELPQLQLLDLSGNLLAEC---VGWHLKLGNIKTLKLAQN-KIETLSGLR 371 (490)
T ss_pred hhhccceeEEeccccc-------eeeehhhhhcccceEeecccchhHhh---hhhHhhhcCEeeeehhhh-hHhhhhhhH
Confidence 3345678888888776 22344566778899999999887776 778778889999999998 677888888
Q ss_pred CCCccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccc
Q 001993 836 KLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDME 896 (985)
Q Consensus 836 ~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 896 (985)
++=+|..|+++++. ++.+.. .. ..+.+|+|+.|.|.+.|
T Consensus 372 KLYSLvnLDl~~N~-Ie~lde-V~--------------------~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 372 KLYSLVNLDLSSNQ-IEELDE-VN--------------------HIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhheeccccccc-hhhHHH-hc--------------------ccccccHHHHHhhcCCC
Confidence 88899999998844 544432 11 12467777777777654
No 101
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=0.00011 Score=84.37 Aligned_cols=180 Identities=14% Similarity=0.196 Sum_probs=108.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhh--h-------------
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEV--R------------- 243 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~------------- 243 (985)
+++|-+.-.+.+.+++..+. -.....++|+.|+||||+|+.++..-.- .
T Consensus 17 diiGq~~i~~~L~~~i~~~~----------------i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~ 80 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQR----------------VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCV 80 (486)
T ss_pred HccChHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHH
Confidence 68899999999999987432 3356778999999999999998762100 0
Q ss_pred ----ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHH
Q 001993 244 ----NHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQ 314 (985)
Q Consensus 244 ----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~ 314 (985)
+.|...+++..+.. ...+++ ..+.+.. .+++-++|+|+++.......+.
T Consensus 81 ~i~~g~~~d~~eidaas~---------------------~gvd~i-r~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~na 138 (486)
T PRK14953 81 EIDKGSFPDLIEIDAASN---------------------RGIDDI-RALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNA 138 (486)
T ss_pred HHhcCCCCcEEEEeCccC---------------------CCHHHH-HHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHH
Confidence 01111222211111 111211 1122221 3567799999997666666777
Q ss_pred HHhhhcCCCCCcEEEEEc-CchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCC
Q 001993 315 LLGCLRCGSKESRILVTT-RNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKG 393 (985)
Q Consensus 315 l~~~l~~~~~gs~iivTt-R~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G 393 (985)
+...+........+|++| +...+...+.. ....+.+.+++.++....+.+.+-..+.. ...+.+..|++.++|
T Consensus 139 LLk~LEepp~~~v~Il~tt~~~kl~~tI~S-Rc~~i~f~~ls~~el~~~L~~i~k~egi~-----id~~al~~La~~s~G 212 (486)
T PRK14953 139 LLKTLEEPPPRTIFILCTTEYDKIPPTILS-RCQRFIFSKPTKEQIKEYLKRICNEEKIE-----YEEKALDLLAQASEG 212 (486)
T ss_pred HHHHHhcCCCCeEEEEEECCHHHHHHHHHH-hceEEEcCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCC
Confidence 888877655555555554 43333322211 12578999999999988888766443321 112457778889999
Q ss_pred ChhHHHHHH
Q 001993 394 LPLAVKTLG 402 (985)
Q Consensus 394 lPLai~~~~ 402 (985)
.+..+....
T Consensus 213 ~lr~al~~L 221 (486)
T PRK14953 213 GMRDAASLL 221 (486)
T ss_pred CHHHHHHHH
Confidence 776554443
No 102
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=7.8e-05 Score=83.74 Aligned_cols=176 Identities=15% Similarity=0.261 Sum_probs=105.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhc--------cCCceE
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRN--------HFNEKI 250 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------~f~~~~ 250 (985)
+++|.+...+.+.+.+..+. -...+.++|++|+||||+|+.+++. +.. .|...+
T Consensus 18 ~iig~~~~~~~l~~~i~~~~----------------~~~~~L~~G~~G~GKt~~a~~la~~--l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENNH----------------LAQALLFCGPRGVGKTTCARILARK--INQPGYDDPNEDFSFNI 79 (367)
T ss_pred hcCCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCCCCCCCcce
Confidence 68999999999999987332 3468899999999999999999763 221 121111
Q ss_pred EEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH----HhcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCc
Q 001993 251 WVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRE----SIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKES 326 (985)
Q Consensus 251 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 326 (985)
+.... ......+++...+.+ -..+++-++|+|++.......++.+...+.......
T Consensus 80 -~~l~~-------------------~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~ 139 (367)
T PRK14970 80 -FELDA-------------------ASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHA 139 (367)
T ss_pred -EEecc-------------------ccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCce
Confidence 11110 011112222221111 012455689999996555556777777665544455
Q ss_pred EEEEEc-CchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001993 327 RILVTT-RNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 327 ~iivTt-R~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 398 (985)
.+|++| ....+...... ....+++.+++.++....+...+...+.. . ..+.+..+++.++|.+-.+
T Consensus 140 ~~Il~~~~~~kl~~~l~s-r~~~v~~~~~~~~~l~~~l~~~~~~~g~~--i---~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 140 IFILATTEKHKIIPTILS-RCQIFDFKRITIKDIKEHLAGIAVKEGIK--F---EDDALHIIAQKADGALRDA 206 (367)
T ss_pred EEEEEeCCcccCCHHHHh-cceeEecCCccHHHHHHHHHHHHHHcCCC--C---CHHHHHHHHHhCCCCHHHH
Confidence 565555 33333222211 12578999999999998888766543321 1 1356788888999866533
No 103
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=8.5e-05 Score=87.40 Aligned_cols=187 Identities=17% Similarity=0.248 Sum_probs=108.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhc-cCCceEEEEeCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRN-HFNEKIWVCVSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~s~~ 257 (985)
+++|-+..++.+..++..+. -...+.++|+.|+||||+|+.++.. +-. +.. ..+
T Consensus 19 dIiGQe~~v~~L~~aI~~~r----------------l~HAYLF~GP~GtGKTt~AriLAk~--LnC~~~~-~~~------ 73 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSNK----------------ISHAYLFSGPRGTGKTSVAKIFANA--LNCSHKT-DLL------ 73 (725)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCcHHHHHHHHHHH--hcccccC-CCC------
Confidence 68999999999999887432 3456789999999999999999762 110 000 000
Q ss_pred CCHHHHHHHHHHH----hcCCCCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEE
Q 001993 258 FDDIRIAKAILES----LKGSATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRI 328 (985)
Q Consensus 258 ~~~~~~~~~i~~~----l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 328 (985)
.+-......... +..........+++. .+.+.+ .+++-++|+|++.......+..++..+........+
T Consensus 74 -~pC~~C~~~~~~~~Dvieidaasn~~vd~IR-eLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tif 151 (725)
T PRK07133 74 -EPCQECIENVNNSLDIIEMDAASNNGVDEIR-ELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIF 151 (725)
T ss_pred -CchhHHHHhhcCCCcEEEEeccccCCHHHHH-HHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEE
Confidence 000000000000 000000011122221 222222 356679999999877667788888888765555555
Q ss_pred EE-EcCchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001993 329 LV-TTRNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 329 iv-TtR~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 398 (985)
|+ |++...+...+.. ....+++.+++.++....+...+...+.. ...+.+..|++.++|.+--+
T Consensus 152 ILaTte~~KLl~TI~S-Rcq~ieF~~L~~eeI~~~L~~il~kegI~-----id~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 152 ILATTEVHKIPLTILS-RVQRFNFRRISEDEIVSRLEFILEKENIS-----YEKNALKLIAKLSSGSLRDA 216 (725)
T ss_pred EEEcCChhhhhHHHHh-hceeEEccCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHH
Confidence 54 4444444322211 12689999999999998888755433221 11245778999999976533
No 104
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=3.7e-05 Score=90.96 Aligned_cols=196 Identities=17% Similarity=0.219 Sum_probs=115.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|-+..++.|..++..+. -...+.++|+.|+||||+|+.++.. +...... .-...+
T Consensus 17 eiiGq~~~~~~L~~~i~~~~----------------i~~a~Lf~Gp~G~GKTtlA~~lA~~--l~c~~~~----~~~~~c 74 (585)
T PRK14950 17 ELVGQEHVVQTLRNAIAEGR----------------VAHAYLFTGPRGVGKTSTARILAKA--VNCTTND----PKGRPC 74 (585)
T ss_pred HhcCCHHHHHHHHHHHHhCC----------------CceEEEEECCCCCCHHHHHHHHHHH--hcCCCCC----CCCCCC
Confidence 78999999999988887332 3456789999999999999999862 2111000 000111
Q ss_pred CHHHHHHHHHHHhcCC-----CCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEE
Q 001993 259 DDIRIAKAILESLKGS-----ATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRI 328 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 328 (985)
+.....+.|......+ .......+++.. +.+.+ .+++-++|+|++........+.+...+......+.+
T Consensus 75 ~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~-ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~ 153 (585)
T PRK14950 75 GTCEMCRAIAEGSAVDVIEMDAASHTSVDDARE-IIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIF 153 (585)
T ss_pred ccCHHHHHHhcCCCCeEEEEeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEE
Confidence 1122233332221110 001122233222 22222 256679999999766666677888887765556666
Q ss_pred EEEcCc-hhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHh
Q 001993 329 LVTTRN-EKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGS 403 (985)
Q Consensus 329 ivTtR~-~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 403 (985)
|++|.+ ..+...+.. ....+.+.+++.++....+...+...+.. -..+.+..|++.++|.+..+...-.
T Consensus 154 Il~t~~~~kll~tI~S-R~~~i~f~~l~~~el~~~L~~~a~~egl~-----i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 154 ILATTEVHKVPATILS-RCQRFDFHRHSVADMAAHLRKIAAAEGIN-----LEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred EEEeCChhhhhHHHHh-ccceeeCCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 666543 333222211 12578899999999988888776543321 1135678899999998875544433
No 105
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.07 E-value=9.3e-05 Score=84.35 Aligned_cols=169 Identities=17% Similarity=0.178 Sum_probs=103.1
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccC--CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHF--NEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
..-+.|+|..|+|||+|++.+++ .+.... ..+++++ ..++...+...+.... .....+++.+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~--~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~ 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKN--YIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc
Confidence 34689999999999999999998 333222 2344554 3456666666654310 11223333333
Q ss_pred CceEEEEecCCCCCCc-ccH-HHHHhhhcC-CCCCcEEEEEcCchh---------hHHhhcCcccccccCCCCChHHHHH
Q 001993 294 GKKFFLVLDDVWTEEP-QNW-EQLLGCLRC-GSKESRILVTTRNEK---------VAIAIGTTKFNIIPIELLSDEDCWS 361 (985)
Q Consensus 294 ~k~~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~~~l~~L~~~e~~~ 361 (985)
..-+||+||+..... ..+ +.+...+.. ...|..||+|+.... +...+... -++.+++++.++-.+
T Consensus 206 -~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~G--l~~~L~~pd~e~r~~ 282 (450)
T PRK14087 206 -QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMG--LSIAIQKLDNKTATA 282 (450)
T ss_pred -cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCC--ceeccCCcCHHHHHH
Confidence 345889999964331 122 334444432 134457888876432 22233333 578899999999999
Q ss_pred HHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhh
Q 001993 362 IFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLL 405 (985)
Q Consensus 362 Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L 405 (985)
++.+++-..+.. ..-.+++..-|++.++|.|-.+..+...+
T Consensus 283 iL~~~~~~~gl~---~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 283 IIKKEIKNQNIK---QEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHHHhcCCC---CCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 999887543210 01224678899999999998776555433
No 106
>PF14516 AAA_35: AAA-like domain
Probab=98.07 E-value=0.00065 Score=74.57 Aligned_cols=201 Identities=14% Similarity=0.112 Sum_probs=118.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC-
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP- 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~- 257 (985)
..|.|...-+++.+.+... ...+.|.|+-.+|||+|...+.+..+. ..| .++++++..-
T Consensus 12 ~Yi~R~~~e~~~~~~i~~~------------------G~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~ 71 (331)
T PF14516_consen 12 FYIERPPAEQECYQEIVQP------------------GSYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLG 71 (331)
T ss_pred cccCchHHHHHHHHHHhcC------------------CCEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCC
Confidence 5678886677788877632 258999999999999999999874222 233 4567776542
Q ss_pred ----CCHHHHHHHHHHHhcCCCCC-----------CCCHHHHHHHHHHHh---cCceEEEEecCCCCCCc--ccHHHHHh
Q 001993 258 ----FDDIRIAKAILESLKGSATN-----------AVESETVLKQLRESI---EGKKFFLVLDDVWTEEP--QNWEQLLG 317 (985)
Q Consensus 258 ----~~~~~~~~~i~~~l~~~~~~-----------~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~--~~~~~l~~ 317 (985)
.+...+++.++..+...-.- ..........+.+++ .+++.+|+||+++..-. ...+++..
T Consensus 72 ~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~ 151 (331)
T PF14516_consen 72 SAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFG 151 (331)
T ss_pred CcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHH
Confidence 24565666666555432110 011223333444443 26899999999964211 11223333
Q ss_pred hhc----CCC----CCcEEEEEcCchhhHHhhcC--c---ccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHH
Q 001993 318 CLR----CGS----KESRILVTTRNEKVAIAIGT--T---KFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIG 384 (985)
Q Consensus 318 ~l~----~~~----~gs~iivTtR~~~v~~~~~~--~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~ 384 (985)
.++ ... -..-.++............. . -...+.|.+++.+|...|+..+...- .+ ...
T Consensus 152 ~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~------~~---~~~ 222 (331)
T PF14516_consen 152 LLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF------SQ---EQL 222 (331)
T ss_pred HHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC------CH---HHH
Confidence 332 111 11112222222211111111 1 01478899999999999998764321 11 228
Q ss_pred HHHHHhcCCChhHHHHHHhhhhcC
Q 001993 385 RQIVSKCKGLPLAVKTLGSLLRFK 408 (985)
Q Consensus 385 ~~i~~~c~GlPLai~~~~~~L~~~ 408 (985)
++|...+||+|.-+..++..+...
T Consensus 223 ~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 223 EQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHc
Confidence 899999999999999999999654
No 107
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=0.00012 Score=85.78 Aligned_cols=201 Identities=14% Similarity=0.212 Sum_probs=112.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEE-eCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVC-VSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~-~s~~ 257 (985)
+++|-+..++.|..++..+. -...+.++|+.|+||||+|+.+++.-.-...++...|.. +...
T Consensus 17 eivGQe~i~~~L~~~i~~~r----------------i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~ 80 (620)
T PRK14954 17 DITAQEHITHTIQNSLRMDR----------------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEP 80 (620)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCC
Confidence 78999999999988886332 335688999999999999998876311111111001110 0011
Q ss_pred CCHHHHHHHHHHHhcC-----CCCCCCCHHHHHHHHHHH----hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEE
Q 001993 258 FDDIRIAKAILESLKG-----SATNAVESETVLKQLRES----IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRI 328 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 328 (985)
+..-...+.+...-.. ........+++...+... ..+.+-++|+|+++.......+.+...+......+.+
T Consensus 81 Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~ 160 (620)
T PRK14954 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIF 160 (620)
T ss_pred CccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 1111111111110000 000112234433322222 2355668999999776666788888888766556665
Q ss_pred EEEc-CchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChh-HHHHH
Q 001993 329 LVTT-RNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPL-AVKTL 401 (985)
Q Consensus 329 ivTt-R~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 401 (985)
|++| +...+...+.. ....+++.+++.++....+.+.+...+.. -..+.+..|++.++|..- |+..+
T Consensus 161 IL~t~~~~kLl~TI~S-Rc~~vef~~l~~~ei~~~L~~i~~~egi~-----I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 161 IFATTELHKIPATIAS-RCQRFNFKRIPLDEIQSQLQMICRAEGIQ-----IDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred EEEeCChhhhhHHHHh-hceEEecCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHhCCCHHHHHHHH
Confidence 5554 43333322211 12689999999999888887755432211 113557889999999654 44433
No 108
>PRK05642 DNA replication initiation factor; Validated
Probab=98.05 E-value=0.00011 Score=76.33 Aligned_cols=156 Identities=19% Similarity=0.278 Sum_probs=94.9
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGK 295 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 295 (985)
...+.|+|..|+|||+|++.+++. ....-..++|++..+ +... .. .+.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~--------------~~----~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR--------------GP----ELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh--------------hH----HHHHhhhhC
Confidence 357899999999999999999873 332224567776532 1110 01 222223322
Q ss_pred eEEEEecCCCCCC-cccHHH-HHhhhcC-CCCCcEEEEEcCchhh---------HHhhcCcccccccCCCCChHHHHHHH
Q 001993 296 KFFLVLDDVWTEE-PQNWEQ-LLGCLRC-GSKESRILVTTRNEKV---------AIAIGTTKFNIIPIELLSDEDCWSIF 363 (985)
Q Consensus 296 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtR~~~v---------~~~~~~~~~~~~~l~~L~~~e~~~Lf 363 (985)
. +||+||+.... ...|.. +...+.. ...|..||+|++.... ...+... .++++.+++.++-.+++
T Consensus 99 d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~g--l~~~l~~~~~e~~~~il 175 (234)
T PRK05642 99 E-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLA--LVFQMRGLSDEDKLRAL 175 (234)
T ss_pred C-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcC--eeeecCCCCHHHHHHHH
Confidence 3 67899996321 234544 4444432 2345679998875332 2222223 57889999999999999
Q ss_pred HHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhh
Q 001993 364 SQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLL 405 (985)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L 405 (985)
+.++...+. ..+ +++..-|++++.|..-.+..+-..|
T Consensus 176 ~~ka~~~~~--~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 176 QLRASRRGL--HLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHHcCC--CCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 876654422 122 3677888888888876665554444
No 109
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.1e-07 Score=95.51 Aligned_cols=117 Identities=19% Similarity=0.190 Sum_probs=79.8
Q ss_pred hhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhh----hccccccEEeEeccCC
Q 001993 752 EKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWM----LSLAKLRVLTLRFCNE 827 (985)
Q Consensus 752 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~----~~l~~L~~L~L~~~~~ 827 (985)
....+.+|+.|.+|+|+||...... .......+ -++|..|+|+||...-. .+.+ ..+++|..|+|++|..
T Consensus 252 ~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hi--se~l~~LNlsG~rrnl~---~sh~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 252 LQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHI--SETLTQLNLSGYRRNLQ---KSHLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred HHHHHHhhhhHhhcCchHhhccchh-hhHHHhhh--chhhhhhhhhhhHhhhh---hhHHHHHHHhCCceeeeccccccc
Confidence 3345777889999999998722211 11222222 36899999999874332 2222 2689999999999977
Q ss_pred CCc--CCCCCCCCccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccc
Q 001993 828 CEC--LPPLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDME 896 (985)
Q Consensus 828 ~~~--l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 896 (985)
++. +-.+-+++.|++|.++.|..+ +|..+.. ....|+|.+|++.+|-
T Consensus 326 l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~--------------------l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 326 LKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLE--------------------LNSKPSLVYLDVFGCV 374 (419)
T ss_pred cCchHHHHHHhcchheeeehhhhcCC--ChHHeee--------------------eccCcceEEEEecccc
Confidence 663 224678999999999999854 3333332 2467999999998874
No 110
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.03 E-value=2.8e-07 Score=97.31 Aligned_cols=264 Identities=17% Similarity=0.109 Sum_probs=157.5
Q ss_pred CCCeEecCCCCCccc--cchhhcCCCCCcEeeccCcccccccc-hhh-hhccccceeecccccccccccCC--CcCCCCC
Q 001993 626 HLRYLALGENPWIKE--LPEALCELCNLQTLDVSLCHYLKRLP-ERI-GQLINLRHLMNSKEEWSRLSYMP--RGMERLT 699 (985)
Q Consensus 626 ~Lr~L~L~~~~~i~~--lP~~i~~L~~L~~L~l~~~~~l~~lP-~~i-~~L~~L~~L~l~~n~~~~l~~~p--~~i~~L~ 699 (985)
.|+.|+++|+..+.. +-.....++|++.|.+.+|..++.-- ..+ ..+.+|++|++. .|..++.+- ......+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~--~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLH--SCSSITDVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhc--ccchhHHHHHHHHHHhhh
Confidence 477888999875543 33446688999999999998654321 223 457899999998 676554321 1123344
Q ss_pred CCCccCceEecCCCcccccCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhH
Q 001993 700 GLRTLGAFVASGGKSSKACSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHR 779 (985)
Q Consensus 700 ~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 779 (985)
+|..|++....... + ........++..++.+.+.+|. . ...
T Consensus 217 kL~~lNlSwc~qi~---~--------------------------------~gv~~~~rG~~~l~~~~~kGC~---e-~~l 257 (483)
T KOG4341|consen 217 KLKYLNLSWCPQIS---G--------------------------------NGVQALQRGCKELEKLSLKGCL---E-LEL 257 (483)
T ss_pred hHHHhhhccCchhh---c--------------------------------CcchHHhccchhhhhhhhcccc---c-ccH
Confidence 55555554332222 0 0011112233333333333222 0 001
Q ss_pred hhhcCC-CCCCCCCeEEEeeccCCCCCCCChhhh--ccccccEEeEeccCCCCcCC--CC-CCCCccceeeccCCCCceE
Q 001993 780 VVLECL-QPPSSLEKLGIYGYAGDTISPTSDWML--SLAKLRVLTLRFCNECECLP--PL-GKLPCLETLVLEGMSSVKR 853 (985)
Q Consensus 780 ~~~~~l-~~~~~L~~L~l~~~~~~~~~~~p~~~~--~l~~L~~L~L~~~~~~~~l~--~l-~~l~~L~~L~L~~~~~l~~ 853 (985)
+.+... .-+.-+.++++..|...+.. .-|.- .+..|+.|..++|...++.+ .+ .+.++|+.|.+.+|..+..
T Consensus 258 e~l~~~~~~~~~i~~lnl~~c~~lTD~--~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd 335 (483)
T KOG4341|consen 258 EALLKAAAYCLEILKLNLQHCNQLTDE--DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSD 335 (483)
T ss_pred HHHHHHhccChHhhccchhhhccccch--HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhh
Confidence 111111 11233445555555433321 11221 57889999999998766544 34 3789999999999987655
Q ss_pred eCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcccccccccceeecccccCCCC---
Q 001993 854 LGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKAL--- 930 (985)
Q Consensus 854 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~l--- 930 (985)
.+...+ ....+.|+.|.+.+|....+-.... ...++|.|+.|.++.|..++.-
T Consensus 336 ~~ft~l---------------------~rn~~~Le~l~~e~~~~~~d~tL~s---ls~~C~~lr~lslshce~itD~gi~ 391 (483)
T KOG4341|consen 336 RGFTML---------------------GRNCPHLERLDLEECGLITDGTLAS---LSRNCPRLRVLSLSHCELITDEGIR 391 (483)
T ss_pred hhhhhh---------------------hcCChhhhhhcccccceehhhhHhh---hccCCchhccCChhhhhhhhhhhhh
Confidence 543333 2467899999999886554442222 2347999999999999887764
Q ss_pred --CCCCCCCCCcCeEEecCchhhhhhhc
Q 001993 931 --PDYILGSTSLDKLLIYYSRHLNNRYN 956 (985)
Q Consensus 931 --p~~~~~l~~L~~L~i~~c~~l~~~~~ 956 (985)
...-.++..|..+++.+||.+++..-
T Consensus 392 ~l~~~~c~~~~l~~lEL~n~p~i~d~~L 419 (483)
T KOG4341|consen 392 HLSSSSCSLEGLEVLELDNCPLITDATL 419 (483)
T ss_pred hhhhccccccccceeeecCCCCchHHHH
Confidence 23334566799999999999888643
No 111
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=0.00017 Score=82.73 Aligned_cols=180 Identities=12% Similarity=0.142 Sum_probs=113.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhh--hcc-----------
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEV--RNH----------- 245 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~----------- 245 (985)
+++|-+...+.+...+..+. -.....++|+.|+||||+|+.++..-.- ...
T Consensus 15 eiiGqe~v~~~L~~~I~~gr----------------l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~ 78 (535)
T PRK08451 15 ELIGQESVSKTLSLALDNNR----------------LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQ 78 (535)
T ss_pred HccCcHHHHHHHHHHHHcCC----------------CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 68999988899988886332 3457789999999999999988762100 000
Q ss_pred -----CC-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hcCceEEEEecCCCCCCcccHHHH
Q 001993 246 -----FN-EKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRES----IEGKKFFLVLDDVWTEEPQNWEQL 315 (985)
Q Consensus 246 -----f~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l 315 (985)
+. .++.+..+.. ...+++...+... ..+++-++|+|++.....+..+.+
T Consensus 79 ~~~~~~h~dv~eldaas~---------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NAL 137 (535)
T PRK08451 79 SALENRHIDIIEMDAASN---------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNAL 137 (535)
T ss_pred HHhhcCCCeEEEeccccc---------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHH
Confidence 11 1112211111 1123332222210 124567999999988777778888
Q ss_pred HhhhcCCCCCcEEEEEcCch-hhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCC
Q 001993 316 LGCLRCGSKESRILVTTRNE-KVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGL 394 (985)
Q Consensus 316 ~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 394 (985)
+..+......+++|++|.+. .+...... ....+++.+++.++....+.+.+...+.. -..+.+..|++.++|.
T Consensus 138 LK~LEEpp~~t~FIL~ttd~~kL~~tI~S-Rc~~~~F~~Ls~~ei~~~L~~Il~~EGi~-----i~~~Al~~Ia~~s~Gd 211 (535)
T PRK08451 138 LKTLEEPPSYVKFILATTDPLKLPATILS-RTQHFRFKQIPQNSIISHLKTILEKEGVS-----YEPEALEILARSGNGS 211 (535)
T ss_pred HHHHhhcCCceEEEEEECChhhCchHHHh-hceeEEcCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCc
Confidence 88887666677777777553 22211111 12688999999999999888766543321 1135678899999998
Q ss_pred hhHHHHH
Q 001993 395 PLAVKTL 401 (985)
Q Consensus 395 PLai~~~ 401 (985)
+--+...
T Consensus 212 lR~alnl 218 (535)
T PRK08451 212 LRDTLTL 218 (535)
T ss_pred HHHHHHH
Confidence 8655444
No 112
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.01 E-value=1.4e-06 Score=87.61 Aligned_cols=132 Identities=20% Similarity=0.162 Sum_probs=96.6
Q ss_pred ccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCC
Q 001993 573 VYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCN 650 (985)
Q Consensus 573 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~ 650 (985)
...+..|..+++++|... . +.....-.+.+|+|+++ .+..+ .++..|.+|..|||++|. +.++--.-.+|-|
T Consensus 280 ~dTWq~LtelDLS~N~I~---~-iDESvKL~Pkir~L~lS~N~i~~v-~nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGN 353 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT---Q-IDESVKLAPKLRRLILSQNRIRTV-QNLAELPQLQLLDLSGNL-LAECVGWHLKLGN 353 (490)
T ss_pred cchHhhhhhccccccchh---h-hhhhhhhccceeEEeccccceeee-hhhhhcccceEeecccch-hHhhhhhHhhhcC
Confidence 345677888888888632 2 23335556778889888 44444 347788889999999998 7777666668889
Q ss_pred CcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCceEecCCC
Q 001993 651 LQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGK 713 (985)
Q Consensus 651 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~ 713 (985)
.++|.|++|. ++.+ .++.+|.+|..|++++|+...+..+ .+||+|+.|+++.+.++....
T Consensus 354 IKtL~La~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV-~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 354 IKTLKLAQNK-IETL-SGLRKLYSLVNLDLSSNQIEELDEV-NHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred Eeeeehhhhh-Hhhh-hhhHhhhhheeccccccchhhHHHh-cccccccHHHHHhhcCCCccc
Confidence 9999999887 7766 4688899999999987766444333 578999999888887655443
No 113
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.99 E-value=5e-05 Score=84.98 Aligned_cols=186 Identities=18% Similarity=0.204 Sum_probs=99.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
++.|+++.+++|.+.+...-.. . ... ...+-..++-+.|+|++|+|||++|+.+++ .....| +.+..
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~-~-~~~--~~~g~~~p~gvLL~GppGtGKT~lakaia~--~l~~~~-----~~v~~-- 189 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKH-P-ELF--EEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNATF-----IRVVG-- 189 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcC-H-HHH--HhcCCCCCceEEEECCCCCCHHHHHHHHHH--hCCCCE-----Eecch--
Confidence 7899999999999887532100 0 000 000012345699999999999999999998 333333 22211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEecCCCCC-----------CcccHHHHHhh---hcC--
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESI-EGKKFFLVLDDVWTE-----------EPQNWEQLLGC---LRC-- 321 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-----------~~~~~~~l~~~---l~~-- 321 (985)
..+ .....+ ........+.+.. ...+.+|+|||++.. +......+... +..
T Consensus 190 --~~l----~~~~~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 --SEL----VRKYIG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred --HHH----HHHhhh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 111 111100 0111112222222 346789999998642 11112223222 221
Q ss_pred CCCCcEEEEEcCchhhH-HhhcC-c-ccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001993 322 GSKESRILVTTRNEKVA-IAIGT-T-KFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 322 ~~~gs~iivTtR~~~v~-~~~~~-~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 395 (985)
...+.+||.||...... ..+.. . -...+.+...+.++..++|..+....... .... ...+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~--~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA--EDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC--ccCC----HHHHHHHcCCCC
Confidence 13466888888764322 11111 0 01468899999999999999877543321 1111 456777777654
No 114
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.99 E-value=6.2e-05 Score=77.05 Aligned_cols=184 Identities=15% Similarity=0.168 Sum_probs=114.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEE-EEeCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIW-VCVSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w-v~~s~~ 257 (985)
+++|-+..++-+.+.+.. ........+|++|.|||+-|+.++..-.-.+-|++++- .++|..
T Consensus 37 e~~gQe~vV~~L~~a~~~-----------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde 99 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLR-----------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE 99 (346)
T ss_pred hhcchHHHHHHHHHHHhh-----------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc
Confidence 688998888888888873 35678999999999999999888763222355666442 344432
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh--cCce-EEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCc
Q 001993 258 FDDIRIAKAILESLKGSATNAVESETVLKQLRESI--EGKK-FFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRN 334 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 334 (985)
.... +.+ ....+.+.+........ ..++ -.+|||+++....+.|..++..+......++.|+.+-+
T Consensus 100 rGis-----vvr------~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcny 168 (346)
T KOG0989|consen 100 RGIS-----VVR------EKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNY 168 (346)
T ss_pred cccc-----chh------hhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCC
Confidence 2111 000 00001111110000000 1123 48899999888889999999999877666766555544
Q ss_pred hh-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChh
Q 001993 335 EK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPL 396 (985)
Q Consensus 335 ~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 396 (985)
.. +...+ ......+..++|.+++...-++..+-.++.+.+ .+..+.|++.++|---
T Consensus 169 lsrii~pi-~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d-----~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 169 LSRIIRPL-VSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID-----DDALKLIAKISDGDLR 225 (346)
T ss_pred hhhCChHH-HhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC-----HHHHHHHHHHcCCcHH
Confidence 32 11111 111267899999999999988888766554322 3567889999988644
No 115
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.97 E-value=7.1e-05 Score=82.35 Aligned_cols=148 Identities=20% Similarity=0.282 Sum_probs=85.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.+...+.+..++..+ .-+.++.++|++|+||||+|+.+++. ... ....++.+. .
T Consensus 22 ~~~~~~~~~~~l~~~~~~~----------------~~~~~lll~G~~G~GKT~la~~l~~~--~~~---~~~~i~~~~-~ 79 (316)
T PHA02544 22 ECILPAADKETFKSIVKKG----------------RIPNMLLHSPSPGTGKTTVAKALCNE--VGA---EVLFVNGSD-C 79 (316)
T ss_pred HhcCcHHHHHHHHHHHhcC----------------CCCeEEEeeCcCCCCHHHHHHHHHHH--hCc---cceEeccCc-c
Confidence 6899999999999998733 23568888999999999999999873 221 233444443 1
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCC-CcccHHHHHhhhcCCCCCcEEEEEcCchh-
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTE-EPQNWEQLLGCLRCGSKESRILVTTRNEK- 336 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR~~~- 336 (985)
. ....+..+...... ..+.+.+-++|+||+... .....+.+...+.....+.++|+||....
T Consensus 80 ~-~~~i~~~l~~~~~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~ 143 (316)
T PHA02544 80 R-IDFVRNRLTRFAST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNG 143 (316)
T ss_pred c-HHHHHHHHHHHHHh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhh
Confidence 1 11111111111000 001234568999999654 22233445555555566778999886543
Q ss_pred hHHhhcCcccccccCCCCChHHHHHHHHH
Q 001993 337 VAIAIGTTKFNIIPIELLSDEDCWSIFSQ 365 (985)
Q Consensus 337 v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~ 365 (985)
+...+.. ....+.+...+.++..+++..
T Consensus 144 l~~~l~s-R~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 144 IIEPLRS-RCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred chHHHHh-hceEEEeCCCCHHHHHHHHHH
Confidence 1111111 114566767777777665543
No 116
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.96 E-value=3.5e-07 Score=100.06 Aligned_cols=133 Identities=25% Similarity=0.287 Sum_probs=77.4
Q ss_pred CccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcC
Q 001993 570 PSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCE 647 (985)
Q Consensus 570 ~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~ 647 (985)
+..+.++..|..|+++.|... .+|..+.. --|++|.++ .++.+|..|+.+.+|..|+.+.|. +..+|..++.
T Consensus 114 p~~i~~L~~lt~l~ls~NqlS----~lp~~lC~-lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~ 187 (722)
T KOG0532|consen 114 PEAICNLEALTFLDLSSNQLS----HLPDGLCD-LPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGY 187 (722)
T ss_pred chhhhhhhHHHHhhhccchhh----cCChhhhc-CcceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHHhhh
Confidence 444445555555555554321 12221221 124455444 455566666666666666666666 6666666666
Q ss_pred CCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccCceEecCCC
Q 001993 648 LCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASGGK 713 (985)
Q Consensus 648 L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~ 713 (985)
|..|+.|.++.|+ +..+|..+. --.|..||++ |+++..+|-.|.+|+.||+|.+-.+....
T Consensus 188 l~slr~l~vrRn~-l~~lp~El~-~LpLi~lDfS---cNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 188 LTSLRDLNVRRNH-LEDLPEELC-SLPLIRLDFS---CNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred HHHHHHHHHhhhh-hhhCCHHHh-CCceeeeecc---cCceeecchhhhhhhhheeeeeccCCCCC
Confidence 6666666666665 666666666 3346666666 66677788888888888888776655443
No 117
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00018 Score=82.02 Aligned_cols=173 Identities=16% Similarity=0.228 Sum_probs=105.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhc--------------
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRN-------------- 244 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------- 244 (985)
+++|.+..++.+.+++..+. -...+.++|+.|+||||+|+.++..-.-..
T Consensus 18 diiGq~~~v~~L~~~i~~~~----------------i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C 81 (451)
T PRK06305 18 EILGQDAVVAVLKNALRFNR----------------AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASC 81 (451)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHH
Confidence 78999999999999887332 346788999999999999999876211000
Q ss_pred -------cCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH-----hcCceEEEEecCCCCCCcccH
Q 001993 245 -------HFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRES-----IEGKKFFLVLDDVWTEEPQNW 312 (985)
Q Consensus 245 -------~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~~~~~ 312 (985)
+++ .+++.... ....+++.. +.+. ..+.+-++|+|++........
T Consensus 82 ~~i~~~~~~d-~~~i~g~~---------------------~~gid~ir~-i~~~l~~~~~~~~~kvvIIdead~lt~~~~ 138 (451)
T PRK06305 82 KEISSGTSLD-VLEIDGAS---------------------HRGIEDIRQ-INETVLFTPSKSRYKIYIIDEVHMLTKEAF 138 (451)
T ss_pred HHHhcCCCCc-eEEeeccc---------------------cCCHHHHHH-HHHHHHhhhhcCCCEEEEEecHHhhCHHHH
Confidence 011 11111000 011122111 1111 135677899999976555566
Q ss_pred HHHHhhhcCCCCCcEEEEEcCc-hhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhc
Q 001993 313 EQLLGCLRCGSKESRILVTTRN-EKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKC 391 (985)
Q Consensus 313 ~~l~~~l~~~~~gs~iivTtR~-~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c 391 (985)
+.+...+........+|++|.. ..+...+.. ....+++.+++.++....+.+.+...+.. -..+.+..|++.+
T Consensus 139 n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~s-Rc~~v~f~~l~~~el~~~L~~~~~~eg~~-----i~~~al~~L~~~s 212 (451)
T PRK06305 139 NSLLKTLEEPPQHVKFFLATTEIHKIPGTILS-RCQKMHLKRIPEETIIDKLALIAKQEGIE-----TSREALLPIARAA 212 (451)
T ss_pred HHHHHHhhcCCCCceEEEEeCChHhcchHHHH-hceEEeCCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHc
Confidence 7777777765556667766643 222222111 12578999999999988888765433211 1234678899999
Q ss_pred CCChh
Q 001993 392 KGLPL 396 (985)
Q Consensus 392 ~GlPL 396 (985)
+|.+-
T Consensus 213 ~gdlr 217 (451)
T PRK06305 213 QGSLR 217 (451)
T ss_pred CCCHH
Confidence 99764
No 118
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00026 Score=83.59 Aligned_cols=195 Identities=15% Similarity=0.210 Sum_probs=112.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhc-cCCceEEEEeCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRN-HFNEKIWVCVSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~s~~ 257 (985)
+++|.+...+.|..++..+. -...+.++|+.|+||||+|+.++.. +.. ..... ....
T Consensus 17 ~liGq~~i~~~L~~~l~~~r----------------l~~a~Lf~Gp~G~GKttlA~~lAk~--L~c~~~~~~----~~~~ 74 (620)
T PRK14948 17 ELVGQEAIATTLKNALISNR----------------IAPAYLFTGPRGTGKTSSARILAKS--LNCLNSDKP----TPEP 74 (620)
T ss_pred hccChHHHHHHHHHHHHcCC----------------CCceEEEECCCCCChHHHHHHHHHH--hcCCCcCCC----CCCC
Confidence 68899999999999887432 2346789999999999999999873 211 11000 0011
Q ss_pred CCHHHHHHHHHHHhcC-----CCCCCCCHHHHHHHHHHH----hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEE
Q 001993 258 FDDIRIAKAILESLKG-----SATNAVESETVLKQLRES----IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRI 328 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 328 (985)
+..-...+.+...... ........+++.+.+... ..+++-++|+|+++......++.++..+........+
T Consensus 75 Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvf 154 (620)
T PRK14948 75 CGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVF 154 (620)
T ss_pred CcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEE
Confidence 1111222222221111 001112233332222211 1255668999999877667788888888765555555
Q ss_pred EEEcCch-hhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHH
Q 001993 329 LVTTRNE-KVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTL 401 (985)
Q Consensus 329 ivTtR~~-~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 401 (985)
|++|.+. .+...+.. ....+++.+++.++....+...+...+.. . ..+.+..|++.++|.+..+...
T Consensus 155 IL~t~~~~~llpTIrS-Rc~~~~f~~l~~~ei~~~L~~ia~kegi~--i---s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 155 VLATTDPQRVLPTIIS-RCQRFDFRRIPLEAMVQHLSEIAEKESIE--I---EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred EEEeCChhhhhHHHHh-heeEEEecCCCHHHHHHHHHHHHHHhCCC--C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 5555433 32222111 12578888999999888777665433221 1 1245788999999988655443
No 119
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=4.3e-07 Score=91.45 Aligned_cols=161 Identities=20% Similarity=0.146 Sum_probs=108.8
Q ss_pred cccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcC----
Q 001993 756 LKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECL---- 831 (985)
Q Consensus 756 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l---- 831 (985)
+..|.+|+.|.|.+.. .++.+...+..-.+|+.|+|+++.|.+-..+---+.+++.|.+|+|++|...+..
T Consensus 206 Ls~C~kLk~lSlEg~~-----LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~ 280 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLR-----LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVA 280 (419)
T ss_pred HHHHHhhhhccccccc-----cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHH
Confidence 4455666666666544 2344555667778999999999887554222234558999999999999654422
Q ss_pred -CCCCCCCccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcc
Q 001993 832 -PPLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGK 910 (985)
Q Consensus 832 -~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~ 910 (985)
..++ ++|+.|+|+||.. .+... ++..+ ...+|+|.+|+|+++..++.-... ..
T Consensus 281 V~his--e~l~~LNlsG~rr--nl~~s-----h~~tL-------------~~rcp~l~~LDLSD~v~l~~~~~~----~~ 334 (419)
T KOG2120|consen 281 VAHIS--ETLTQLNLSGYRR--NLQKS-----HLSTL-------------VRRCPNLVHLDLSDSVMLKNDCFQ----EF 334 (419)
T ss_pred Hhhhc--hhhhhhhhhhhHh--hhhhh-----HHHHH-------------HHhCCceeeeccccccccCchHHH----HH
Confidence 1233 7899999999752 22111 00000 246899999999999888773332 33
Q ss_pred cccccccceeecccccCCCCCC---CCCCCCCcCeEEecCch
Q 001993 911 TIMPRLRHLSICWSPELKALPD---YILGSTSLDKLLIYYSR 949 (985)
Q Consensus 911 ~~lp~L~~L~i~~c~~L~~lp~---~~~~l~~L~~L~i~~c~ 949 (985)
..|+.|++|.++.|..+. |. .+...|+|..|++.||-
T Consensus 335 ~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 335 FKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEecccc
Confidence 479999999999997654 32 35678899999999984
No 120
>PRK06620 hypothetical protein; Validated
Probab=97.94 E-value=0.00024 Score=72.46 Aligned_cols=137 Identities=17% Similarity=0.110 Sum_probs=79.9
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
+.+.|+|++|+|||+|++.+++.. .. .++. ..+. . + +.. +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~--~~-----~~~~--~~~~--------------------~-~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS--NA-----YIIK--DIFF--------------------N-E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc--CC-----EEcc--hhhh--------------------c-h-------hHH-hcC
Confidence 678999999999999999887732 11 1221 0000 0 0 011 123
Q ss_pred EEEEecCCCCCCcccHHHHHhhhc-CCCCCcEEEEEcCchhh-------HHhhcCcccccccCCCCChHHHHHHHHHHhc
Q 001993 297 FFLVLDDVWTEEPQNWEQLLGCLR-CGSKESRILVTTRNEKV-------AIAIGTTKFNIIPIELLSDEDCWSIFSQLAL 368 (985)
Q Consensus 297 ~LlVlDdv~~~~~~~~~~l~~~l~-~~~~gs~iivTtR~~~v-------~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 368 (985)
-+|++||+..... ..+...+. ....|..||+|++.... ...+... -+++++++++++-..++++.+.
T Consensus 87 d~lliDdi~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~g--l~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 87 NAFIIEDIENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSV--LSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred CEEEEeccccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCC--ceEeeCCCCHHHHHHHHHHHHH
Confidence 5788999953211 12222221 11346689999875432 2233333 4799999999998888887765
Q ss_pred CCCCCcccchhHHHHHHHHHHhcCCChhHHHHH
Q 001993 369 SRRLDIEESENFENIGRQIVSKCKGLPLAVKTL 401 (985)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 401 (985)
..+. .. -+++..-|++++.|.--.+.-+
T Consensus 162 ~~~l--~l---~~ev~~~L~~~~~~d~r~l~~~ 189 (214)
T PRK06620 162 ISSV--TI---SRQIIDFLLVNLPREYSKIIEI 189 (214)
T ss_pred HcCC--CC---CHHHHHHHHHHccCCHHHHHHH
Confidence 3322 11 1456777888887765544433
No 121
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.93 E-value=9.8e-07 Score=91.34 Aligned_cols=148 Identities=21% Similarity=0.142 Sum_probs=74.2
Q ss_pred cccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCCCCC--CCChhhhccccccEEeEeccCCCCc----C
Q 001993 758 SKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGDTIS--PTSDWMLSLAKLRVLTLRFCNECEC----L 831 (985)
Q Consensus 758 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~p~~~~~l~~L~~L~L~~~~~~~~----l 831 (985)
+.+.|+.+....|... .......-..++.++.|+.+.+..|.+..-. .+-..+..+++|+.|+|.+|..... +
T Consensus 155 ~~~~Lrv~i~~rNrle-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLE-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCcceEEEEeeccccc-cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 3456666666655411 1111222334455577777777766532110 0011233677888888887743221 1
Q ss_pred -CCCCCCCccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeeccccccccccccccccCcc
Q 001993 832 -PPLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDDCEIAGGK 910 (985)
Q Consensus 832 -~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~~~~~~~~ 910 (985)
..+..+|+|+.|++..|. ++.-+..-+... + ...+|+|+.|.+.++. ++.-.....+...
T Consensus 234 akaL~s~~~L~El~l~dcl-l~~~Ga~a~~~a---------------l--~~~~p~L~vl~l~gNe-It~da~~~la~~~ 294 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCL-LENEGAIAFVDA---------------L--KESAPSLEVLELAGNE-ITRDAALALAACM 294 (382)
T ss_pred HHHhcccchheeecccccc-cccccHHHHHHH---------------H--hccCCCCceeccCcch-hHHHHHHHHHHHH
Confidence 135566788888888876 332221100000 0 1347888888887743 1110000000011
Q ss_pred cccccccceeecccc
Q 001993 911 TIMPRLRHLSICWSP 925 (985)
Q Consensus 911 ~~lp~L~~L~i~~c~ 925 (985)
...|.|+.|++++|.
T Consensus 295 ~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 295 AEKPDLEKLNLNGNR 309 (382)
T ss_pred hcchhhHHhcCCccc
Confidence 247888888888873
No 122
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00029 Score=83.19 Aligned_cols=177 Identities=14% Similarity=0.163 Sum_probs=111.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchh-----------------
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNE----------------- 241 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~----------------- 241 (985)
+++|.+...+.|..++..+. -...+.++|+.|+||||+|+.++..-.
T Consensus 18 ~viGq~~~~~~L~~~i~~~~----------------l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC 81 (614)
T PRK14971 18 SVVGQEALTTTLKNAIATNK----------------LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESC 81 (614)
T ss_pred HhcCcHHHHHHHHHHHHcCC----------------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHH
Confidence 68999999999999987432 345788999999999999988876211
Q ss_pred ----hhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hcCceEEEEecCCCCCCcccHH
Q 001993 242 ----VRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRES----IEGKKFFLVLDDVWTEEPQNWE 313 (985)
Q Consensus 242 ----~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~ 313 (985)
...+|+. ..+..++ ....+++...+.+. ..+++-++|+|++.......++
T Consensus 82 ~~~~~~~~~n~-~~ld~~~---------------------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~n 139 (614)
T PRK14971 82 VAFNEQRSYNI-HELDAAS---------------------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFN 139 (614)
T ss_pred HHHhcCCCCce-EEecccc---------------------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHH
Confidence 0011221 1111111 11122222222111 1245668899999877777788
Q ss_pred HHHhhhcCCCCCcEEEEEc-CchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcC
Q 001993 314 QLLGCLRCGSKESRILVTT-RNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCK 392 (985)
Q Consensus 314 ~l~~~l~~~~~gs~iivTt-R~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~ 392 (985)
.++..+.....++.+|++| +...+...+.. ...++++.+++.++....+.+.+...+.. ...+.+..|++.++
T Consensus 140 aLLK~LEepp~~tifIL~tt~~~kIl~tI~S-Rc~iv~f~~ls~~ei~~~L~~ia~~egi~-----i~~~al~~La~~s~ 213 (614)
T PRK14971 140 AFLKTLEEPPSYAIFILATTEKHKILPTILS-RCQIFDFNRIQVADIVNHLQYVASKEGIT-----AEPEALNVIAQKAD 213 (614)
T ss_pred HHHHHHhCCCCCeEEEEEeCCchhchHHHHh-hhheeecCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcC
Confidence 8988888766666665544 44444333221 12689999999999998888766443321 11245788999999
Q ss_pred CChhHHH
Q 001993 393 GLPLAVK 399 (985)
Q Consensus 393 GlPLai~ 399 (985)
|..--+.
T Consensus 214 gdlr~al 220 (614)
T PRK14971 214 GGMRDAL 220 (614)
T ss_pred CCHHHHH
Confidence 9765443
No 123
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00024 Score=83.68 Aligned_cols=193 Identities=17% Similarity=0.252 Sum_probs=109.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.+...+.|..++..+. -...+.++|+.|+||||+|+.+++.-.-..... ...+
T Consensus 17 ~iiGq~~v~~~L~~~i~~~~----------------~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~-------~~~c 73 (576)
T PRK14965 17 DLTGQEHVSRTLQNAIDTGR----------------VAHAFLFTGARGVGKTSTARILAKALNCEQGLT-------AEPC 73 (576)
T ss_pred HccCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC-------CCCC
Confidence 78999999999999887332 345678999999999999999876310000000 0000
Q ss_pred CHHHHHHHHHHHhcC-----CCCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEE
Q 001993 259 DDIRIAKAILESLKG-----SATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRI 328 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 328 (985)
..-.....|...-.. ........+++. .+.+.+ .+++-++|+|+++.......+.++..+........+
T Consensus 74 ~~c~~c~~i~~g~~~d~~eid~~s~~~v~~ir-~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~f 152 (576)
T PRK14965 74 NVCPPCVEITEGRSVDVFEIDGASNTGVDDIR-ELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKF 152 (576)
T ss_pred CccHHHHHHhcCCCCCeeeeeccCccCHHHHH-HHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEE
Confidence 000111111000000 000011122221 122222 345568999999877667788888888766556666
Q ss_pred EEEc-CchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChh-HHHHH
Q 001993 329 LVTT-RNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPL-AVKTL 401 (985)
Q Consensus 329 ivTt-R~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 401 (985)
|++| ....+...+.. ....+++.+++.++....+...+...+.. -..+....|++.++|..- |+..+
T Consensus 153 Il~t~~~~kl~~tI~S-Rc~~~~f~~l~~~~i~~~L~~i~~~egi~-----i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 153 IFATTEPHKVPITILS-RCQRFDFRRIPLQKIVDRLRYIADQEGIS-----ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred EEEeCChhhhhHHHHH-hhhhhhcCCCCHHHHHHHHHHHHHHhCCC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6554 44444332211 12678899999999888887655433221 113457788999998664 44444
No 124
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.92 E-value=5e-05 Score=84.00 Aligned_cols=120 Identities=11% Similarity=0.118 Sum_probs=76.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
++++.+...+.+...|... +.+.++|++|+|||++|+.+++.......|..+.||.++..+
T Consensus 176 d~~i~e~~le~l~~~L~~~-------------------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsy 236 (459)
T PRK11331 176 DLFIPETTIETILKRLTIK-------------------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSY 236 (459)
T ss_pred cccCCHHHHHHHHHHHhcC-------------------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccc
Confidence 6788899999999998733 367889999999999999999853334467778899999888
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh--cCceEEEEecCCCCCCccc-HHHHHhhhc
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESI--EGKKFFLVLDDVWTEEPQN-WEQLLGCLR 320 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~-~~~l~~~l~ 320 (985)
+..+++..+.-. ..... .......+.+.... .+++++||+|++...+... +..+...+.
T Consensus 237 SYeDFI~G~rP~--~vgy~-~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 237 SYEDFIQGYRPN--GVGFR-RKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred cHHHHhcccCCC--CCCeE-ecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 876665432110 00000 00111222222222 2478999999997655433 445544443
No 125
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.91 E-value=3.5e-05 Score=83.70 Aligned_cols=90 Identities=18% Similarity=0.180 Sum_probs=63.0
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC--CCHHHHHHHHHHHhcCCCCCCCCHH------HHHH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP--FDDIRIAKAILESLKGSATNAVESE------TVLK 286 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 286 (985)
.-..++|+|++|+|||||++.+++... ..+|+..+||.+.+. .++.++++.++..+-....+..... .+.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 446899999999999999999999532 337999899998865 7899999999655443333322111 1112
Q ss_pred HHHHH-hcCceEEEEecCCC
Q 001993 287 QLRES-IEGKKFFLVLDDVW 305 (985)
Q Consensus 287 ~l~~~-l~~k~~LlVlDdv~ 305 (985)
..... -+|++++|++|++.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHcCCCeEEEEEChh
Confidence 22222 25899999999994
No 126
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.91 E-value=7.3e-06 Score=93.40 Aligned_cols=124 Identities=28% Similarity=0.373 Sum_probs=96.5
Q ss_pred ccCCCCceEEEccCcCCcchhhhHHHhhccCC-cceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCC
Q 001993 573 VYDETKLRSLVLDQRLSFKPRIALSKLFDRLT-CLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELC 649 (985)
Q Consensus 573 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~-~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~ 649 (985)
....+.+..|.+.++.... ++.....+. +|+.|+++ .+..+|..++.++.|+.|++++|. +..+|...+.+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~----i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~ 186 (394)
T COG4886 112 LLELTNLTSLDLDNNNITD----IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLS 186 (394)
T ss_pred hhcccceeEEecCCccccc----CccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhh
Confidence 3444678888888876422 333344553 89999998 788888889999999999999999 999999888999
Q ss_pred CCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCCCCCccC
Q 001993 650 NLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLG 705 (985)
Q Consensus 650 ~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~ 705 (985)
+|+.|++++|. +..+|..+..+..|+.|.+++|.. ..++..+.+++++..|.
T Consensus 187 ~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~---~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 187 NLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSI---IELLSSLSNLKNLSGLE 238 (394)
T ss_pred hhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcc---eecchhhhhcccccccc
Confidence 99999999998 999999888888899999996642 34444555555554443
No 127
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.90 E-value=0.0001 Score=90.48 Aligned_cols=154 Identities=16% Similarity=0.198 Sum_probs=86.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhcc------CCceEE-
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNH------FNEKIW- 251 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------f~~~~w- 251 (985)
.++||+.++.++++.|.... ..-+.++|.+|+||||+|+.++. ++... ....+|
T Consensus 188 ~~iGr~~ei~~~i~~l~r~~-----------------~~n~lLvG~pGvGKTal~~~La~--~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRRR-----------------QNNPILTGEAGVGKTAVVEGLAL--RIAAGDVPPALRNVRLLS 248 (852)
T ss_pred cccCCHHHHHHHHHHHhcCC-----------------cCceeEECCCCCCHHHHHHHHHH--HHhhCCCCccccCCeEEE
Confidence 58999999999999997443 23457999999999999999997 33211 112232
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEecCCCCCC-------cccHH-HHHhhhcCC
Q 001993 252 VCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI-EGKKFFLVLDDVWTEE-------PQNWE-QLLGCLRCG 322 (985)
Q Consensus 252 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-------~~~~~-~l~~~l~~~ 322 (985)
+..+.- ..+......-.+.+...+.+.- .+++.+|++|+++... ..+.. .+.+.+..
T Consensus 249 l~l~~l-------------~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~- 314 (852)
T TIGR03345 249 LDLGLL-------------QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR- 314 (852)
T ss_pred eehhhh-------------hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-
Confidence 222110 0011111111122222222221 2468999999986421 11111 23333322
Q ss_pred CCCcEEEEEcCchhhHHhhcC-----cccccccCCCCChHHHHHHHHHH
Q 001993 323 SKESRILVTTRNEKVAIAIGT-----TKFNIIPIELLSDEDCWSIFSQL 366 (985)
Q Consensus 323 ~~gs~iivTtR~~~v~~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~ 366 (985)
..-++|-||...+....+.. ..+..+.+.+++.+++.++++..
T Consensus 315 -G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 315 -GELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred -CCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 23466767665433222111 12368999999999999997543
No 128
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00034 Score=81.62 Aligned_cols=194 Identities=16% Similarity=0.171 Sum_probs=112.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|-+..++.+..++..+. -...+.++|+.|+||||+|+.++..-.-...... ..+....
T Consensus 17 diiGqe~iv~~L~~~i~~~~----------------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~ 77 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESNK----------------IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECS 77 (563)
T ss_pred HccCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccch
Confidence 78999999999999987432 3457899999999999999999873110000000 0000000
Q ss_pred CHHHHHHHHHHHhcC-----CCCCCCCHHHHHHHHHH----HhcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEE
Q 001993 259 DDIRIAKAILESLKG-----SATNAVESETVLKQLRE----SIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRIL 329 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ii 329 (985)
+- +.|...-.. ........+++...... -..+++-++|+|++.......++.+...+........+|
T Consensus 78 ~C----~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI 153 (563)
T PRK06647 78 SC----KSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFI 153 (563)
T ss_pred HH----HHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEE
Confidence 00 111110000 00011223333222111 123566789999998776667888888887666666666
Q ss_pred EEcCc-hhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHH
Q 001993 330 VTTRN-EKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTL 401 (985)
Q Consensus 330 vTtR~-~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 401 (985)
++|.. ..+...+.. ....+++.+++.++....+.+.+...+.. -..+.+..|++.++|.+-.+...
T Consensus 154 ~~tte~~kL~~tI~S-Rc~~~~f~~l~~~el~~~L~~i~~~egi~-----id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 154 FATTEVHKLPATIKS-RCQHFNFRLLSLEKIYNMLKKVCLEDQIK-----YEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred EecCChHHhHHHHHH-hceEEEecCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 66543 333222211 12578999999999988888766443321 12355777899999987544433
No 129
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=2.7e-06 Score=90.54 Aligned_cols=151 Identities=17% Similarity=0.072 Sum_probs=90.0
Q ss_pred CCCeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC-CCCCCC-cc--cccCC
Q 001993 550 SWKARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL-PVGQIP-KG--IKKLI 625 (985)
Q Consensus 550 ~~~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~-~~~~lp-~~--i~~l~ 625 (985)
-++.|.+++.+....... .......++++|.|+++++....... +.++...+++|+.|+++ +--..| .+ -..+.
T Consensus 120 ~kkL~~IsLdn~~V~~~~-~~~~~k~~~~v~~LdLS~NL~~nw~~-v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAG-IEEYSKILPNVRDLDLSRNLFHNWFP-VLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred HHhhhheeecCccccccc-hhhhhhhCCcceeecchhhhHHhHHH-HHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 356788888877663211 11355678899999999886543333 45667788888888887 111111 11 13567
Q ss_pred CCCeEecCCCCCccc--cchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCC--CcCCCCCCC
Q 001993 626 HLRYLALGENPWIKE--LPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMP--RGMERLTGL 701 (985)
Q Consensus 626 ~Lr~L~L~~~~~i~~--lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p--~~i~~L~~L 701 (985)
+|+.|.|+.|. +.. +-.....+++|+.|+|.+|..+..--.....+..|+.|+|++|.. ..++ .-++.++.|
T Consensus 198 ~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l---i~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 198 HLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL---IDFDQGYKVGTLPGL 273 (505)
T ss_pred hhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc---cccccccccccccch
Confidence 78888888887 542 233344677888888888753333223344567788888876544 2333 224455555
Q ss_pred CccCc
Q 001993 702 RTLGA 706 (985)
Q Consensus 702 ~~L~~ 706 (985)
..|++
T Consensus 274 ~~Lnl 278 (505)
T KOG3207|consen 274 NQLNL 278 (505)
T ss_pred hhhhc
Confidence 55444
No 130
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.84 E-value=0.00044 Score=70.23 Aligned_cols=176 Identities=19% Similarity=0.206 Sum_probs=101.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+|+|-++-++++.=++.... .. +..+.-|.++|++|.||||||.-+++ +....+.. ....
T Consensus 27 efiGQ~~vk~~L~ifI~AAk----------~r--~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~k~----tsGp-- 86 (332)
T COG2255 27 EFIGQEKVKEQLQIFIKAAK----------KR--GEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNLKI----TSGP-- 86 (332)
T ss_pred HhcChHHHHHHHHHHHHHHH----------hc--CCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCeEe----cccc--
Confidence 79999988888866665432 11 34567899999999999999999998 34333211 1111
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCC--------CCCc----
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCG--------SKES---- 326 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~--------~~gs---- 326 (985)
.-.....+...+.. |+ ..=+|++|.++......-+-+.+..... ++++
T Consensus 87 ------------------~leK~gDlaaiLt~-Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ 146 (332)
T COG2255 87 ------------------ALEKPGDLAAILTN-LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIR 146 (332)
T ss_pred ------------------cccChhhHHHHHhc-CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEe
Confidence 11111222222211 22 2335566777655433333333333221 2233
Q ss_pred -------EEEEEcCchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHH
Q 001993 327 -------RILVTTRNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVK 399 (985)
Q Consensus 327 -------~iivTtR~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 399 (985)
-|=-|||.-.+...+...-.-+.+++..+.+|-.+...+.+..-... -.++.+.+|+++..|-|--..
T Consensus 147 ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~-----i~~~~a~eIA~rSRGTPRIAn 221 (332)
T COG2255 147 LDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIE-----IDEEAALEIARRSRGTPRIAN 221 (332)
T ss_pred ccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCC-----CChHHHHHHHHhccCCcHHHH
Confidence 34467886544433322111457888899999999888876433221 223568999999999996443
No 131
>CHL00181 cbbX CbbX; Provisional
Probab=97.84 E-value=0.00076 Score=72.14 Aligned_cols=138 Identities=14% Similarity=0.136 Sum_probs=75.9
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
..+.++|++|+||||+|+.++......+.-...-|+.++. . .+.....+.. .......+.+. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~----~l~~~~~g~~-----~~~~~~~l~~a---~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----D----DLVGQYIGHT-----APKTKEVLKKA---MG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----H----HHHHHHhccc-----hHHHHHHHHHc---cC
Confidence 4588999999999999999987321111111222444441 1 1222222211 11112222222 23
Q ss_pred EEEEecCCCCC---------CcccHHHHHhhhcCCCCCcEEEEEcCchhhHHhhcC------cccccccCCCCChHHHHH
Q 001993 297 FFLVLDDVWTE---------EPQNWEQLLGCLRCGSKESRILVTTRNEKVAIAIGT------TKFNIIPIELLSDEDCWS 361 (985)
Q Consensus 297 ~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~------~~~~~~~l~~L~~~e~~~ 361 (985)
-+|++|++... ..+..+.+...+.....+.+||+++....+...... .-...+.+.+++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 59999999642 122334455555555556677788765443322110 111478999999999999
Q ss_pred HHHHHhcCC
Q 001993 362 IFSQLALSR 370 (985)
Q Consensus 362 Lf~~~~~~~ 370 (985)
++...+...
T Consensus 204 I~~~~l~~~ 212 (287)
T CHL00181 204 IAKIMLEEQ 212 (287)
T ss_pred HHHHHHHHh
Confidence 988876543
No 132
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.83 E-value=0.00064 Score=73.61 Aligned_cols=196 Identities=16% Similarity=0.201 Sum_probs=114.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhh-------------hcc
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEV-------------RNH 245 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-------------~~~ 245 (985)
+++|-+...+.+...+..+. -.....++|+.|+||+++|..++..-.- ...
T Consensus 5 ~iiGq~~~~~~L~~~i~~~r----------------l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNR----------------IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCC----------------CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 68899999999999887432 3468999999999999999888662100 122
Q ss_pred CCceEEEEeCCCCCHHHHHHHHHHHhc--CCCCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhh
Q 001993 246 FNEKIWVCVSEPFDDIRIAKAILESLK--GSATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGC 318 (985)
Q Consensus 246 f~~~~wv~~s~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~ 318 (985)
.+...|+.-....+-..+-..-++..+ .........+++ +.+.+.+ .+.+-++|+|++........+.++..
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~ 147 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKT 147 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHH
Confidence 233455532100000000001111111 111112223333 2333333 35677999999987777778888888
Q ss_pred hcCCCCCcEEEEEcCc-hhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhH
Q 001993 319 LRCGSKESRILVTTRN-EKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLA 397 (985)
Q Consensus 319 l~~~~~gs~iivTtR~-~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 397 (985)
+....+. .+|++|.+ ..+...+.. ....+++.+++.++..+.+.+....... . .....++..++|.|..
T Consensus 148 LEEPp~~-~fILi~~~~~~Ll~TI~S-Rcq~i~f~~l~~~~~~~~L~~~~~~~~~-----~---~~~~~l~~~a~Gs~~~ 217 (314)
T PRK07399 148 LEEPGNG-TLILIAPSPESLLPTIVS-RCQIIPFYRLSDEQLEQVLKRLGDEEIL-----N---INFPELLALAQGSPGA 217 (314)
T ss_pred HhCCCCC-eEEEEECChHhCcHHHHh-hceEEecCCCCHHHHHHHHHHhhccccc-----h---hHHHHHHHHcCCCHHH
Confidence 8755544 45555544 333322211 1378999999999999999876422110 0 1135788999999976
Q ss_pred HHHH
Q 001993 398 VKTL 401 (985)
Q Consensus 398 i~~~ 401 (985)
+..+
T Consensus 218 al~~ 221 (314)
T PRK07399 218 AIAN 221 (314)
T ss_pred HHHH
Confidence 5543
No 133
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.83 E-value=0.00053 Score=78.01 Aligned_cols=159 Identities=17% Similarity=0.194 Sum_probs=93.2
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccC--CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHF--NEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
...+.|+|..|+|||+|++.+++. ..... ..++++++ .++...+...+... ..+. +.+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KMEE----FKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHHH----HHHHHH
Confidence 456899999999999999999984 43333 23556643 33444555554321 1222 233333
Q ss_pred CceEEEEecCCCCCCcc-cH-HHHHhhhcCC-CCCcEEEEEcCch-hh--------HHhhcCcccccccCCCCChHHHHH
Q 001993 294 GKKFFLVLDDVWTEEPQ-NW-EQLLGCLRCG-SKESRILVTTRNE-KV--------AIAIGTTKFNIIPIELLSDEDCWS 361 (985)
Q Consensus 294 ~k~~LlVlDdv~~~~~~-~~-~~l~~~l~~~-~~gs~iivTtR~~-~v--------~~~~~~~~~~~~~l~~L~~~e~~~ 361 (985)
+ .-+|||||+...... .+ +.+...+... ..|..||+|+... .. ...+... ..+.+++.+.++-..
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g--~~v~i~~pd~~~r~~ 275 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWG--LVVDIEPPDLETRLA 275 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCC--eEEEeCCCCHHHHHH
Confidence 2 348899999643221 11 2233333211 2345688887642 21 1122222 468899999999999
Q ss_pred HHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHH
Q 001993 362 IFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVK 399 (985)
Q Consensus 362 Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 399 (985)
++.+.+...... . -+++...|++.+.|..-.+.
T Consensus 276 il~~~~~~~~~~--l---~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 276 ILQKKAEEEGLE--L---PDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHHcCCC--C---CHHHHHHHHHhcCCCHHHHH
Confidence 999887654321 1 14667788888888766544
No 134
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.0006 Score=80.00 Aligned_cols=190 Identities=18% Similarity=0.228 Sum_probs=109.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhc-cCCceEEEEeCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRN-HFNEKIWVCVSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~s~~ 257 (985)
+++|.+...+.+.+++..+. -...+.++|+.|+||||+|+.++.. +.. +-. ...+
T Consensus 17 ~viGq~~v~~~L~~~i~~~~----------------~~hayLf~Gp~GtGKTt~Ak~lAka--l~c~~~~------~~~p 72 (559)
T PRK05563 17 DVVGQEHITKTLKNAIKQGK----------------ISHAYLFSGPRGTGKTSAAKIFAKA--VNCLNPP------DGEP 72 (559)
T ss_pred hccCcHHHHHHHHHHHHcCC----------------CCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCC------CCCC
Confidence 78999999999999987432 3456788999999999999998762 110 000 0001
Q ss_pred CCHHHHHHHHHHHhcC-----CCCCCCCHHHHHHHHHHH-----hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcE
Q 001993 258 FDDIRIAKAILESLKG-----SATNAVESETVLKQLRES-----IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESR 327 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 327 (985)
++.-...+.|...... +.......+++.. +.+. ..++.-++|+|++.......++.+...+........
T Consensus 73 C~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~-i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~i 151 (559)
T PRK05563 73 CNECEICKAITNGSLMDVIEIDAASNNGVDEIRD-IRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVI 151 (559)
T ss_pred CCccHHHHHHhcCCCCCeEEeeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeE
Confidence 1111111111111000 0001112222221 2221 135677889999987666678888888776555555
Q ss_pred EEEEc-CchhhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHH
Q 001993 328 ILVTT-RNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVK 399 (985)
Q Consensus 328 iivTt-R~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 399 (985)
+|++| ....+...+.. ....+.+.+++.++....+...+...+.. -..+.+..|++.++|.+..+.
T Consensus 152 fIlatt~~~ki~~tI~S-Rc~~~~f~~~~~~ei~~~L~~i~~~egi~-----i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 152 FILATTEPHKIPATILS-RCQRFDFKRISVEDIVERLKYILDKEGIE-----YEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred EEEEeCChhhCcHHHHh-HheEEecCCCCHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHcCCCHHHHH
Confidence 55544 43333322211 12578899999999988888766433221 113457788889998776443
No 135
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.00037 Score=75.85 Aligned_cols=169 Identities=16% Similarity=0.170 Sum_probs=96.6
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCC------c--eEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFN------E--KIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLK 286 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~------~--~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 286 (985)
-...+.++|+.|+||||+|+.++..-.-..... | +-++....++|...+.. .........+++.+
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~-------~~~~~~i~id~iR~ 93 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEP-------EEADKTIKVDQVRE 93 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEec-------cCCCCCCCHHHHHH
Confidence 356788999999999999999876311000000 0 00010111111000000 00001223344333
Q ss_pred HHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchhh-HHhhcCcccccccCCCCChHHHH
Q 001993 287 QLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEKV-AIAIGTTKFNIIPIELLSDEDCW 360 (985)
Q Consensus 287 ~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v-~~~~~~~~~~~~~l~~L~~~e~~ 360 (985)
. .+.+ .+++-++|+|+++.......+.++..+.....++.+|+||.+... ...+. .....+.+.+++.+++.
T Consensus 94 l-~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~-SRc~~~~~~~~~~~~~~ 171 (328)
T PRK05707 94 L-VSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIK-SRCQQQACPLPSNEESL 171 (328)
T ss_pred H-HHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHH-hhceeeeCCCcCHHHHH
Confidence 2 2222 244455678999888888888999998876677778888776542 22211 11268999999999999
Q ss_pred HHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHH
Q 001993 361 SIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTL 401 (985)
Q Consensus 361 ~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 401 (985)
+.+....... . .+.+..++..++|.|.....+
T Consensus 172 ~~L~~~~~~~----~-----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 172 QWLQQALPES----D-----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHHhcccC----C-----hHHHHHHHHHcCCCHHHHHHH
Confidence 9887653111 0 123567788999999755544
No 136
>PLN03150 hypothetical protein; Provisional
Probab=97.82 E-value=2.3e-05 Score=93.67 Aligned_cols=90 Identities=29% Similarity=0.441 Sum_probs=57.0
Q ss_pred ceeecCC--CC-CCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeeccc
Q 001993 606 LRSIDGL--PV-GQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSK 682 (985)
Q Consensus 606 Lr~L~l~--~~-~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~ 682 (985)
+..|+|+ .+ ..+|..+++|.+|++|+|++|.....+|..++.|.+|+.|+|++|.....+|..+++|++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 4555555 22 34566677777777777777763346777777777777777777764446677777777777777775
Q ss_pred ccccccccCCCcCCC
Q 001993 683 EEWSRLSYMPRGMER 697 (985)
Q Consensus 683 n~~~~l~~~p~~i~~ 697 (985)
|... ..+|..++.
T Consensus 500 N~l~--g~iP~~l~~ 512 (623)
T PLN03150 500 NSLS--GRVPAALGG 512 (623)
T ss_pred Cccc--ccCChHHhh
Confidence 4432 355655543
No 137
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.81 E-value=1.9e-05 Score=62.73 Aligned_cols=57 Identities=37% Similarity=0.496 Sum_probs=47.8
Q ss_pred CCCCeEecCCCCCccccch-hhcCCCCCcEeeccCcccccccch-hhhhccccceeecccc
Q 001993 625 IHLRYLALGENPWIKELPE-ALCELCNLQTLDVSLCHYLKRLPE-RIGQLINLRHLMNSKE 683 (985)
Q Consensus 625 ~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~n 683 (985)
++|++|++++|. +..+|. .+..+++|++|++++|. +..+|+ .+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSST-ESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 468899999997 888885 67889999999999888 777765 5688999999999854
No 138
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.75 E-value=3.3e-05 Score=56.07 Aligned_cols=40 Identities=35% Similarity=0.495 Sum_probs=30.8
Q ss_pred CCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccc
Q 001993 625 IHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLP 666 (985)
Q Consensus 625 ~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP 666 (985)
++|++|++++|. ++.+|..+++|++|++|++++|+ +..+|
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 468888888888 88888888888888888888887 66554
No 139
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.74 E-value=0.00019 Score=87.54 Aligned_cols=157 Identities=21% Similarity=0.230 Sum_probs=86.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchh---hhccC-CceEEEEe
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNE---VRNHF-NEKIWVCV 254 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~f-~~~~wv~~ 254 (985)
.++||+.+++++++.|.... ..-+.++|++|+|||++|+.++.... +...+ ...+|. +
T Consensus 183 ~~igr~~ei~~~~~~L~~~~-----------------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~ 244 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRK-----------------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L 244 (731)
T ss_pred cccCcHHHHHHHHHHHhcCC-----------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e
Confidence 58999999999999987433 23457999999999999999988311 11111 233332 1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEecCCCCCC---------cccHHHHHhhhcCCCC
Q 001993 255 SEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI-EGKKFFLVLDDVWTEE---------PQNWEQLLGCLRCGSK 324 (985)
Q Consensus 255 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~ 324 (985)
+ ... +. .+.... .+.++....+.+.+ +.++.+|++|+++.-. .+.-+.+.+.+.. +
T Consensus 245 ~----~~~----l~---a~~~~~-g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-g- 310 (731)
T TIGR02639 245 D----MGS----LL---AGTKYR-GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-G- 310 (731)
T ss_pred c----HHH----Hh---hhcccc-chHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-C-
Confidence 1 111 11 111111 12222233333333 3468999999986311 1112234443332 1
Q ss_pred CcEEEEEcCchhhHHhhc-----CcccccccCCCCChHHHHHHHHHHh
Q 001993 325 ESRILVTTRNEKVAIAIG-----TTKFNIIPIELLSDEDCWSIFSQLA 367 (985)
Q Consensus 325 gs~iivTtR~~~v~~~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~ 367 (985)
.-++|-+|...+....+. ...++.+.+.+++.++..++++...
T Consensus 311 ~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 311 KLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred CeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 234555555433221111 0123678999999999999998644
No 140
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.73 E-value=0.00048 Score=73.73 Aligned_cols=136 Identities=15% Similarity=0.142 Sum_probs=75.2
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceE
Q 001993 218 IISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKF 297 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 297 (985)
-+.|+|++|+||||+|+.++......+.....-|+.++. . +++..+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~----~l~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----D----DLVGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----H----HHhHhhcccc-----hHHHHHHHHHc---cCc
Confidence 588999999999999988876321111111123444442 1 2222222211 11222222222 336
Q ss_pred EEEecCCCCC---------CcccHHHHHhhhcCCCCCcEEEEEcCchhhHHhhcC------cccccccCCCCChHHHHHH
Q 001993 298 FLVLDDVWTE---------EPQNWEQLLGCLRCGSKESRILVTTRNEKVAIAIGT------TKFNIIPIELLSDEDCWSI 362 (985)
Q Consensus 298 LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~------~~~~~~~l~~L~~~e~~~L 362 (985)
+|+||++... ..+.++.+...+.....+.+||.++........... .-...+++.+++.+|..++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8999999632 122344566666555556677777764433222111 0014689999999999999
Q ss_pred HHHHhcC
Q 001993 363 FSQLALS 369 (985)
Q Consensus 363 f~~~~~~ 369 (985)
+...+..
T Consensus 204 ~~~~l~~ 210 (284)
T TIGR02880 204 AGLMLKE 210 (284)
T ss_pred HHHHHHH
Confidence 8887643
No 141
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.72 E-value=0.00049 Score=73.13 Aligned_cols=173 Identities=10% Similarity=0.130 Sum_probs=83.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++|.+..+++|.+......-.. ... .....+.+...-+.++|++|+||||+|+.+++...-.+......++.++.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~-~~~-~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~-- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINE-KRK-EEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER-- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHH-HHH-HcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH--
Confidence 57888877766654332110000 000 00001134556789999999999999999987311111111122333322
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC--------cccHHHHHhhhcCCCCCcEEEE
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE--------PQNWEQLLGCLRCGSKESRILV 330 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~iiv 330 (985)
.++ ....-+ .........+.+. ..-+|++|+++.-. .+..+.+...+........+|+
T Consensus 83 --~~l----~~~~~g-----~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vil 148 (261)
T TIGR02881 83 --ADL----VGEYIG-----HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLIL 148 (261)
T ss_pred --HHh----hhhhcc-----chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEe
Confidence 111 111101 1111222222221 23489999996421 1233445554444444445666
Q ss_pred EcCchhhHH------hhcCcccccccCCCCChHHHHHHHHHHhcC
Q 001993 331 TTRNEKVAI------AIGTTKFNIIPIELLSDEDCWSIFSQLALS 369 (985)
Q Consensus 331 TtR~~~v~~------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 369 (985)
++...+... .+...-...+++++++.++-.+++.+.+..
T Consensus 149 a~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 149 AGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred cCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 655433211 111110145789999999999999877654
No 142
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.72 E-value=0.00011 Score=69.20 Aligned_cols=97 Identities=23% Similarity=0.223 Sum_probs=54.2
Q ss_pred EEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc-eE
Q 001993 219 ISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGK-KF 297 (985)
Q Consensus 219 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k-~~ 297 (985)
|.|+|++|+||||+|+.+++. ...+ .+.++.+.- .. .........+...+.+.-+.. +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~--l~~~---~~~i~~~~~--------------~~-~~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY--LGFP---FIEIDGSEL--------------IS-SYAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH--TTSE---EEEEETTHH--------------HT-SSTTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhh--cccc---ccccccccc--------------cc-ccccccccccccccccccccccce
Confidence 579999999999999999983 3211 334443321 10 011112222333333332333 89
Q ss_pred EEEecCCCCCCccc-----------HHHHHhhhcCCC---CCcEEEEEcCch
Q 001993 298 FLVLDDVWTEEPQN-----------WEQLLGCLRCGS---KESRILVTTRNE 335 (985)
Q Consensus 298 LlVlDdv~~~~~~~-----------~~~l~~~l~~~~---~gs~iivTtR~~ 335 (985)
+|++||++...... ...+...+.... .+..||.||...
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~ 112 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP 112 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCCh
Confidence 99999996533333 444555555333 245777777763
No 143
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.71 E-value=0.00025 Score=79.64 Aligned_cols=186 Identities=18% Similarity=0.207 Sum_probs=98.1
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
++.|+++.+++|.+.+...-... ... ...+-..++-|.++|++|+|||++|+.+++ +.... |+.++.
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~---~~~-~~~g~~~p~gvLL~GppGtGKT~lAkaia~--~~~~~-----~i~v~~-- 198 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKP---ELF-EEVGIEPPKGVLLYGPPGTGKTLLAKAVAH--ETNAT-----FIRVVG-- 198 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCH---HHH-HhcCCCCCCceEEECCCCCChHHHHHHHHH--HhCCC-----EEEeeh--
Confidence 68999999999988774321000 000 000013456799999999999999999998 33322 233221
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH-HhcCceEEEEecCCCCC-----------CcccHHHHHhhhc---C--
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRE-SIEGKKFFLVLDDVWTE-----------EPQNWEQLLGCLR---C-- 321 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l~---~-- 321 (985)
.. +.....+ . .......+.+ .-...+.+|+|||++.. +......+...+. .
T Consensus 199 --~~----l~~~~~g-----~-~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 --SE----LVQKFIG-----E-GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred --HH----HhHhhcc-----c-hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 11 1111111 0 1112222222 22356789999999532 1111222333332 1
Q ss_pred CCCCcEEEEEcCchhhH-Hhhc-Cc-ccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001993 322 GSKESRILVTTRNEKVA-IAIG-TT-KFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 322 ~~~gs~iivTtR~~~v~-~~~~-~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 395 (985)
...+..||.||...+.. ..+- .. -...+.+.+.+.++-.++|+.+....... .... ...+++.+.|.-
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~--~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA--DDVD----LEELAELTEGAS 337 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC--CcCC----HHHHHHHcCCCC
Confidence 12356788888764322 2221 11 01468899999999999999876543221 1112 345666666643
No 144
>PLN03150 hypothetical protein; Provisional
Probab=97.70 E-value=6.4e-05 Score=89.94 Aligned_cols=103 Identities=23% Similarity=0.335 Sum_probs=85.3
Q ss_pred CceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CC-CCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEe
Q 001993 578 KLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PV-GQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTL 654 (985)
Q Consensus 578 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~-~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L 654 (985)
.++.|.+.++.. ...++..+.++++|+.|+|+ .+ ..+|..++.+.+|++|+|++|.....+|..+++|++|++|
T Consensus 419 ~v~~L~L~~n~L---~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGL---RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCc---cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 478888888764 33456668899999999998 34 4789999999999999999999555899999999999999
Q ss_pred eccCcccccccchhhhhc-cccceeecccc
Q 001993 655 DVSLCHYLKRLPERIGQL-INLRHLMNSKE 683 (985)
Q Consensus 655 ~l~~~~~l~~lP~~i~~L-~~L~~L~l~~n 683 (985)
+|++|.....+|..+..+ .++..+++.+|
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCC
Confidence 999999667899988764 56778888754
No 145
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.69 E-value=0.00065 Score=66.59 Aligned_cols=103 Identities=15% Similarity=0.207 Sum_probs=62.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccC-CceEEEEeCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHF-NEKIWVCVSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~s~~ 257 (985)
++||-|+.++++.-+.. +++.+-+.|.||+|+||||-+..+++. .....+ +.+.-.++|+.
T Consensus 28 dIVGNe~tv~rl~via~-----------------~gnmP~liisGpPG~GKTTsi~~LAr~-LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 28 DIVGNEDTVERLSVIAK-----------------EGNMPNLIISGPPGTGKTTSILCLARE-LLGDSYKEAVLELNASDE 89 (333)
T ss_pred HhhCCHHHHHHHHHHHH-----------------cCCCCceEeeCCCCCchhhHHHHHHHH-HhChhhhhHhhhccCccc
Confidence 79999999988876655 345677899999999999988777762 122222 23333444443
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-------cCceEEEEecCCCCCCcccHHHHHhhhc
Q 001993 258 FDDIRIAKAILESLKGSATNAVESETVLKQLRESI-------EGKKFFLVLDDVWTEEPQNWEQLLGCLR 320 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-------~~k~~LlVlDdv~~~~~~~~~~l~~~l~ 320 (985)
... +-+..+++..- .++.-++|||.+++........++....
T Consensus 90 RGI---------------------DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtME 138 (333)
T KOG0991|consen 90 RGI---------------------DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTME 138 (333)
T ss_pred ccc---------------------HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHH
Confidence 322 22222222221 2566789999997655444444554443
No 146
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.67 E-value=0.0011 Score=76.57 Aligned_cols=159 Identities=16% Similarity=0.168 Sum_probs=94.3
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCC--ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFN--EKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
...+.|+|.+|+|||+|++.+++ .....+. .+++++.. .+...+...+... ..+ .+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~----~~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGN--YILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TME----EFKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHH----HHHHHHh
Confidence 45689999999999999999998 4444432 35566543 3344444444221 122 2333333
Q ss_pred CceEEEEecCCCCCCcc--cHHHHHhhhcC-CCCCcEEEEEcCchh---------hHHhhcCcccccccCCCCChHHHHH
Q 001993 294 GKKFFLVLDDVWTEEPQ--NWEQLLGCLRC-GSKESRILVTTRNEK---------VAIAIGTTKFNIIPIELLSDEDCWS 361 (985)
Q Consensus 294 ~k~~LlVlDdv~~~~~~--~~~~l~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~~~l~~L~~~e~~~ 361 (985)
+.-+|||||+...... ..+.+...+.. ...|..||+||.... +...+... ..+++++.+.++-..
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g--l~v~i~~pd~~~r~~ 287 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWG--LTVDIEPPDLETRIA 287 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCC--eeEEecCCCHHHHHH
Confidence 3448999999643211 12233333321 123445888876532 12223222 478999999999999
Q ss_pred HHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHH
Q 001993 362 IFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVK 399 (985)
Q Consensus 362 Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 399 (985)
++++.+..... . --+++...|++.+.|..-.+.
T Consensus 288 il~~~~~~~~~--~---l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 288 ILKKKAEEEGI--D---LPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHHcCC--C---CCHHHHHHHHcCcCCCHHHHH
Confidence 99998764322 1 123568888999888776543
No 147
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.67 E-value=0.00011 Score=80.49 Aligned_cols=64 Identities=22% Similarity=0.295 Sum_probs=37.3
Q ss_pred cCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCc
Q 001993 623 KLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRG 694 (985)
Q Consensus 623 ~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~ 694 (985)
.+.++++|++++|. +..+|. -..+|+.|++++|..+..+|..+. .+|++|+++ +|..+..+|..
T Consensus 50 ~~~~l~~L~Is~c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls--~Cs~L~sLP~s 113 (426)
T PRK15386 50 EARASGRLYIKDCD-IESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVC--HCPEISGLPES 113 (426)
T ss_pred HhcCCCEEEeCCCC-CcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEcc--Ccccccccccc
Confidence 34566666666665 666662 123466777776666666665442 466677666 45445555543
No 148
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.67 E-value=0.00062 Score=77.60 Aligned_cols=160 Identities=16% Similarity=0.149 Sum_probs=94.5
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccC-C-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHF-N-EKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
..-+.|+|.+|+|||+|++.+++ .....+ . .++|++. .++...+...+... ..+ .+.+...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~----~f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHH----HHHHHHH
Confidence 34599999999999999999998 343333 2 3567754 34556665555321 122 2333333
Q ss_pred CceEEEEecCCCCCC-cccH-HHHHhhhcC-CCCCcEEEEEcC-chhhHH--------hhcCcccccccCCCCChHHHHH
Q 001993 294 GKKFFLVLDDVWTEE-PQNW-EQLLGCLRC-GSKESRILVTTR-NEKVAI--------AIGTTKFNIIPIELLSDEDCWS 361 (985)
Q Consensus 294 ~k~~LlVlDdv~~~~-~~~~-~~l~~~l~~-~~~gs~iivTtR-~~~v~~--------~~~~~~~~~~~l~~L~~~e~~~ 361 (985)
.+.-+|++||+.... ...+ +.+...+.. ...|..||+||. .+.-.. .+... ..+.+++.+.+.-.+
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~g--l~v~i~~pd~e~r~~ 270 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMG--LVAKLEPPDEETRKK 270 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcC--ceEeeCCCCHHHHHH
Confidence 445689999996421 1111 223333321 123446888875 332211 12222 477899999999999
Q ss_pred HHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHH
Q 001993 362 IFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVK 399 (985)
Q Consensus 362 Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 399 (985)
++++.+...... .+ +++...|++.+.|.--.+.
T Consensus 271 IL~~~~~~~~~~--l~---~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 271 IARKMLEIEHGE--LP---EEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHHhcCCC--CC---HHHHHHHHhccccCHHHHH
Confidence 999887543321 12 3567788888887654443
No 149
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.65 E-value=0.0018 Score=65.19 Aligned_cols=184 Identities=18% Similarity=0.266 Sum_probs=110.9
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEe-CCCCCHHHHHHHHHHHhcCCCCCCC--CHHHHHHHHHH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCV-SEPFDDIRIAKAILESLKGSATNAV--ESETVLKQLRE 290 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~~ 290 (985)
.+.+++.++|.-|.|||.+++..... ..+ +.++=|.+ ....+...+...++..+...+.... ..++....+..
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 45579999999999999999944431 111 11222333 3456778888899988877332211 12333333433
Q ss_pred Hh-cCce-EEEEecCCCCCCcccHHHHHhhhcCCCCC---cEEEEEcCchh-------hHHhhcCccccc-ccCCCCChH
Q 001993 291 SI-EGKK-FFLVLDDVWTEEPQNWEQLLGCLRCGSKE---SRILVTTRNEK-------VAIAIGTTKFNI-IPIELLSDE 357 (985)
Q Consensus 291 ~l-~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~g---s~iivTtR~~~-------v~~~~~~~~~~~-~~l~~L~~~ 357 (985)
.. +++| ..+++|++.+...+..+.++-+..-...+ -+|+..-..+- +...... ...+ |++.|++.+
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~-R~~ir~~l~P~~~~ 203 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQ-RIDIRIELPPLTEA 203 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhh-eEEEEEecCCcChH
Confidence 33 4677 99999999877666666665544322112 23444333211 1111111 1134 899999999
Q ss_pred HHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhh
Q 001993 358 DCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSL 404 (985)
Q Consensus 358 e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 404 (985)
+...+++.+..+...+ .+--..+....|.....|.|.+|..++..
T Consensus 204 ~t~~yl~~~Le~a~~~--~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 204 ETGLYLRHRLEGAGLP--EPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHhccCCC--cccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 9999888876655332 22222456778999999999999877653
No 150
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.63 E-value=0.0012 Score=74.97 Aligned_cols=154 Identities=14% Similarity=0.172 Sum_probs=87.7
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGK 295 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 295 (985)
..-+.|+|+.|+|||+|++.+++. ....-..+++++. ..+...+...+... .. ..+++.+. .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~~------~~f~~~~~~~l~~~-----~~----~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVRS------ELFTEHLVSAIRSG-----EM----QRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEeeH------HHHHHHHHHHHhcc-----hH----HHHHHHcc-c
Confidence 356899999999999999999983 3333334556643 34444555544321 11 22333333 3
Q ss_pred eEEEEecCCCCCCccc--HHHHHhhhcC-CCCCcEEEEEcCch-h--------hHHhhcCcccccccCCCCChHHHHHHH
Q 001993 296 KFFLVLDDVWTEEPQN--WEQLLGCLRC-GSKESRILVTTRNE-K--------VAIAIGTTKFNIIPIELLSDEDCWSIF 363 (985)
Q Consensus 296 ~~LlVlDdv~~~~~~~--~~~l~~~l~~-~~~gs~iivTtR~~-~--------v~~~~~~~~~~~~~l~~L~~~e~~~Lf 363 (985)
.-+|++||+....... .+.+...+.. ...|..||+||... . +...+... ..+.+.+++.++-..++
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~G--l~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWG--IAIPLHPLTKEGLRSFL 280 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCC--eEEecCCCCHHHHHHHH
Confidence 4588899986432211 2233333221 12345788888542 1 12222222 57889999999999999
Q ss_pred HHHhcCCCCCcccchhHHHHHHHHHHhcCCC
Q 001993 364 SQLALSRRLDIEESENFENIGRQIVSKCKGL 394 (985)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 394 (985)
.+++...+.. .+ +++..-|++.+.|.
T Consensus 281 ~~k~~~~~~~--l~---~evl~~la~~~~~d 306 (445)
T PRK12422 281 ERKAEALSIR--IE---ETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHcCCC--CC---HHHHHHHHHhcCCC
Confidence 8877554321 11 24455566666543
No 151
>PRK08116 hypothetical protein; Validated
Probab=97.60 E-value=0.00027 Score=74.78 Aligned_cols=104 Identities=24% Similarity=0.304 Sum_probs=61.2
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
..+.|+|.+|+|||+||..+++. ....-..++++++ .+++..+........ ..+..+ +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~~------~~ll~~i~~~~~~~~--~~~~~~----~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVNF------PQLLNRIKSTYKSSG--KEDENE----IIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhccc--cccHHH----HHHHhcCCC
Confidence 35899999999999999999994 3333344666653 345555554433211 111222 233344334
Q ss_pred EEEEecCCCCCCcccHHH--HHhhhcCC-CCCcEEEEEcCch
Q 001993 297 FFLVLDDVWTEEPQNWEQ--LLGCLRCG-SKESRILVTTRNE 335 (985)
Q Consensus 297 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtR~~ 335 (985)
||||||+..+....|.. +...+... ..|..+||||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999996544445543 44433321 3456799999753
No 152
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.59 E-value=0.00043 Score=85.61 Aligned_cols=153 Identities=21% Similarity=0.208 Sum_probs=85.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhc-----cC-CceEEE
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRN-----HF-NEKIWV 252 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-----~f-~~~~wv 252 (985)
.++||+++++++++.|.... ..-+.++|++|+|||++|+.++.. +.. .. ...+|.
T Consensus 180 ~~igr~~ei~~~~~~L~r~~-----------------~~n~lL~G~pGvGKTal~~~la~~--i~~~~vp~~l~~~~i~~ 240 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRT-----------------KNNPILIGEPGVGKTAIAEGLAQR--IVNRDVPDILEDKLVIT 240 (821)
T ss_pred CCCCcHHHHHHHHHHHcccc-----------------cCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEE
Confidence 58999999999999997433 234579999999999999999873 221 11 234442
Q ss_pred EeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHH-HHHHHHHhcCceEEEEecCCCCC-------CcccHHH-HHhhhcCCC
Q 001993 253 CVSEPFDDIRIAKAILESLKGSATNAVESETV-LKQLRESIEGKKFFLVLDDVWTE-------EPQNWEQ-LLGCLRCGS 323 (985)
Q Consensus 253 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~l~~~l~~k~~LlVlDdv~~~-------~~~~~~~-l~~~l~~~~ 323 (985)
+ +.. ..+.+..... +.++. ...+.+.-..++.+|++|+++.- ....... +.+.+..
T Consensus 241 -l----~~~-------~l~ag~~~~g-e~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-- 305 (821)
T CHL00095 241 -L----DIG-------LLLAGTKYRG-EFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-- 305 (821)
T ss_pred -e----eHH-------HHhccCCCcc-HHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--
Confidence 1 111 1112222221 22222 22232222356899999999421 1111223 3333322
Q ss_pred CCcEEEEEcCchhhHHhhcC-----cccccccCCCCChHHHHHHHHH
Q 001993 324 KESRILVTTRNEKVAIAIGT-----TKFNIIPIELLSDEDCWSIFSQ 365 (985)
Q Consensus 324 ~gs~iivTtR~~~v~~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~ 365 (985)
..-++|-+|........... ..+..+.+...+.++...+++.
T Consensus 306 g~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 306 GELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred CCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 22456666665554322111 1235788888999998888765
No 153
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.58 E-value=0.0031 Score=73.03 Aligned_cols=157 Identities=15% Similarity=0.206 Sum_probs=93.2
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccC--CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHF--NEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 294 (985)
..+.|+|..|+|||.|++.+++ .....+ ..+++++. .++...+...+... .. ..+++.+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~--~a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~----~~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGH--YARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KG----DSFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cH----HHHHHHhhc
Confidence 3589999999999999999998 343322 23556643 33444444443221 11 223333332
Q ss_pred ceEEEEecCCCCCCc-ccHH-HHHhhhcC-CCCCcEEEEEcCch---------hhHHhhcCcccccccCCCCChHHHHHH
Q 001993 295 KKFFLVLDDVWTEEP-QNWE-QLLGCLRC-GSKESRILVTTRNE---------KVAIAIGTTKFNIIPIELLSDEDCWSI 362 (985)
Q Consensus 295 k~~LlVlDdv~~~~~-~~~~-~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~~~l~~L~~~e~~~L 362 (985)
-=+|||||+..... ..|. .+...+.. ...|..|||||... .+...+... -++++.+.+.+.-.++
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~G--Lvv~I~~PD~EtR~aI 454 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWG--LITDVQPPELETRIAI 454 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcC--ceEEcCCCCHHHHHHH
Confidence 34788999965322 2232 23333331 12355688888753 223334444 5789999999999999
Q ss_pred HHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001993 363 FSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 363 f~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 398 (985)
+.+++...... .+ +++..-|++++.+..-.|
T Consensus 455 L~kka~~r~l~--l~---~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 455 LRKKAVQEQLN--AP---PEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHHhcCCC--CC---HHHHHHHHHhccCCHHHH
Confidence 99887655432 22 356677777776654443
No 154
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.57 E-value=0.00045 Score=65.68 Aligned_cols=88 Identities=19% Similarity=0.178 Sum_probs=48.0
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc-
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGK- 295 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k- 295 (985)
..+.|+|++|+||||+|+.++.. .......++++..+........... ...................+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 47899999999999999999984 3322234556655443322222211 111111111222222233333444433
Q ss_pred eEEEEecCCCCCC
Q 001993 296 KFFLVLDDVWTEE 308 (985)
Q Consensus 296 ~~LlVlDdv~~~~ 308 (985)
..++++|+++...
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4999999997644
No 155
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.55 E-value=1.3e-05 Score=91.52 Aligned_cols=82 Identities=24% Similarity=0.312 Sum_probs=46.1
Q ss_pred hccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccce
Q 001993 600 FDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRH 677 (985)
Q Consensus 600 ~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~ 677 (985)
+..++.|..|++. .+..+...+..+.+|++|++++|. |..+.. +..|..|+.|++.+|. +..++ .+..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGNL-ISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhheeccCc-chhcc-CCccchhhhc
Confidence 4555566666665 444444335556666666666665 555543 5555566666666665 54443 2444666666
Q ss_pred eecccccc
Q 001993 678 LMNSKEEW 685 (985)
Q Consensus 678 L~l~~n~~ 685 (985)
+++++|.+
T Consensus 167 l~l~~n~i 174 (414)
T KOG0531|consen 167 LDLSYNRI 174 (414)
T ss_pred ccCCcchh
Confidence 66664444
No 156
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.0018 Score=69.85 Aligned_cols=97 Identities=11% Similarity=0.144 Sum_probs=67.6
Q ss_pred CceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCC
Q 001993 294 GKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRL 372 (985)
Q Consensus 294 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 372 (985)
+++-++|+|+++......-+.++..+.....++.+|++|.... +...+.. ....+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrS-RCq~i~~~~~~~~~~~~~L~~~~----~ 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRS-RCQRLEFKLPPAHEALAWLLAQG----V 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHh-hheEeeCCCcCHHHHHHHHHHcC----C
Confidence 5667999999987777777888888887777777777776533 2222111 12678999999999998887531 1
Q ss_pred CcccchhHHHHHHHHHHhcCCChhHHHHHH
Q 001993 373 DIEESENFENIGRQIVSKCKGLPLAVKTLG 402 (985)
Q Consensus 373 ~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 402 (985)
. ...+..++..++|.|+....+.
T Consensus 187 --~-----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 --S-----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred --C-----hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1226678999999998665443
No 157
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.0012 Score=72.35 Aligned_cols=162 Identities=11% Similarity=0.095 Sum_probs=92.7
Q ss_pred ceec-chhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCce--------
Q 001993 179 EIRG-RNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEK-------- 249 (985)
Q Consensus 179 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~-------- 249 (985)
.++| -+.-++.+...+..+ .-.....++|+.|+||||+|+.++..-.-.......
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~----------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN----------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC----------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 3566 566667777777533 245678999999999999999886621000000000
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH----hcCceEEEEecCCCCCCcccHHHHHhhhcCCCCC
Q 001993 250 IWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRES----IEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKE 325 (985)
Q Consensus 250 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 325 (985)
-.+.....+|...+ .. .......+++.+.+... ..+.+-++|+|++........+.++..+.....+
T Consensus 70 ~~~~~~~hpD~~~i--------~~-~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~ 140 (329)
T PRK08058 70 KRIDSGNHPDVHLV--------AP-DGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGG 140 (329)
T ss_pred HHHhcCCCCCEEEe--------cc-ccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCC
Confidence 00000001110000 00 00112233333332221 2355668999999877777788899999877777
Q ss_pred cEEEEEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHH
Q 001993 326 SRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQL 366 (985)
Q Consensus 326 s~iivTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 366 (985)
+.+|++|.+.. +...+.. ....+++.+++.++..+.+.+.
T Consensus 141 ~~~Il~t~~~~~ll~TIrS-Rc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 141 TTAILLTENKHQILPTILS-RCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred ceEEEEeCChHhCcHHHHh-hceeeeCCCCCHHHHHHHHHHc
Confidence 87877776543 2222111 1268999999999998888653
No 158
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.53 E-value=0.00053 Score=82.58 Aligned_cols=156 Identities=20% Similarity=0.234 Sum_probs=86.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhcc-----CCceEEEE
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNH-----FNEKIWVC 253 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----f~~~~wv~ 253 (985)
.++||+.+++++++.|.... ..-+.++|++|+|||++|+.++... +... .++.+|..
T Consensus 187 ~liGR~~ei~~~i~iL~r~~-----------------~~n~LLvGppGvGKT~lae~la~~i-~~~~vP~~l~~~~~~~l 248 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRR-----------------KNNPLLVGESGVGKTAIAEGLAWRI-VQGDVPEVMADCTIYSL 248 (758)
T ss_pred cCcCCCHHHHHHHHHHhccC-----------------CCCeEEECCCCCCHHHHHHHHHHHH-HhcCCCchhcCCeEEec
Confidence 58999999999999998532 1234689999999999999998731 1111 12334321
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEecCCCCC--------CcccHHHHHhhhcCCCC
Q 001993 254 VSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI-EGKKFFLVLDDVWTE--------EPQNWEQLLGCLRCGSK 324 (985)
Q Consensus 254 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~ 324 (985)
+... + +.+.... .+.+.....+.+.+ +..+.+|++|++..- ...+...+...+... .
T Consensus 249 -----~~~~----l---laG~~~~-Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g 314 (758)
T PRK11034 249 -----DIGS----L---LAGTKYR-GDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-G 314 (758)
T ss_pred -----cHHH----H---hcccchh-hhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-C
Confidence 1111 1 1111111 12222222222223 356789999999531 112222233332222 2
Q ss_pred CcEEEEEcCchhhHHhhcC-----cccccccCCCCChHHHHHHHHHH
Q 001993 325 ESRILVTTRNEKVAIAIGT-----TKFNIIPIELLSDEDCWSIFSQL 366 (985)
Q Consensus 325 gs~iivTtR~~~v~~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~ 366 (985)
.-+||-+|...+....+.. ..+..+.+.+.+.+++.++++..
T Consensus 315 ~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 315 KIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred CeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 3456666655443222111 12367999999999999998864
No 159
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.49 E-value=0.00055 Score=76.98 Aligned_cols=166 Identities=17% Similarity=0.176 Sum_probs=89.0
Q ss_pred ceecchhhHHHHHHHHhcCCC-CCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSE-SSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 257 (985)
++.|.+..+++|.+.+.-.-. +... ...+-..+.-|.|+|++|+|||++|+.+++ .....| +.+..++
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~-----~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f---i~V~~se- 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELY-----DDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF---LRVVGSE- 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHH-----HhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE---EEEecch-
Confidence 578999999999887742110 0000 000012345688999999999999999998 343333 2221111
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC-----------ccc---HHHHHhhhcC--
Q 001993 258 FDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE-----------PQN---WEQLLGCLRC-- 321 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~---~~~l~~~l~~-- 321 (985)
+ .....+ .....+...+.....+.+.+|+||+++... ... ...+...+..
T Consensus 253 -----L----~~k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 253 -----L----IQKYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred -----h----hhhhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 1 111111 011112222333334678999999974210 001 1112222221
Q ss_pred CCCCcEEEEEcCchhhHHh-hc-Cc-ccccccCCCCChHHHHHHHHHHhcC
Q 001993 322 GSKESRILVTTRNEKVAIA-IG-TT-KFNIIPIELLSDEDCWSIFSQLALS 369 (985)
Q Consensus 322 ~~~gs~iivTtR~~~v~~~-~~-~~-~~~~~~l~~L~~~e~~~Lf~~~~~~ 369 (985)
...+.+||.||...+.... +- .. -...+.+...+.++..++|..+...
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 2345678888876543322 11 11 1257889999999999999877643
No 160
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.47 E-value=8.4e-05 Score=58.95 Aligned_cols=55 Identities=33% Similarity=0.454 Sum_probs=44.2
Q ss_pred cceeecCC--CCCCCC-cccccCCCCCeEecCCCCCccccch-hhcCCCCCcEeeccCcc
Q 001993 605 CLRSIDGL--PVGQIP-KGIKKLIHLRYLALGENPWIKELPE-ALCELCNLQTLDVSLCH 660 (985)
Q Consensus 605 ~Lr~L~l~--~~~~lp-~~i~~l~~Lr~L~L~~~~~i~~lP~-~i~~L~~L~~L~l~~~~ 660 (985)
+|++|+++ .+..+| ..+..+++|++|++++|. +..+|+ .+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666 456666 467889999999999998 888875 67899999999999986
No 161
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.00049 Score=74.22 Aligned_cols=163 Identities=10% Similarity=0.032 Sum_probs=96.9
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccC---Cc-----eEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHH
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHF---NE-----KIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQ 287 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~-----~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 287 (985)
.....++|+.|+||+++|+.++..-.=.... .| +-++..+.++|...+ ..........+++.+
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p~~~~~I~id~iR~- 94 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL--------EPIDNKDIGVDQVRE- 94 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE--------ccccCCCCCHHHHHH-
Confidence 4578899999999999999987621000000 00 011111222221111 000011223444332
Q ss_pred HHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchh-hHHhhcCcccccccCCCCChHHHHH
Q 001993 288 LRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWS 361 (985)
Q Consensus 288 l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~ 361 (985)
+.+.+ .+++-++|+|+++.......+.++..+.....++.+|++|.+.. +...... ....+.+.+++.+++.+
T Consensus 95 l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S-RC~~~~~~~~~~~~~~~ 173 (325)
T PRK06871 95 INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS-RCQTWLIHPPEEQQALD 173 (325)
T ss_pred HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh-hceEEeCCCCCHHHHHH
Confidence 22222 36677889999988887888899999987777788887777643 3222111 12689999999999999
Q ss_pred HHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHH
Q 001993 362 IFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAV 398 (985)
Q Consensus 362 Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 398 (985)
.+....... ...+...+..++|.|+..
T Consensus 174 ~L~~~~~~~----------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 174 WLQAQSSAE----------ISEILTALRINYGRPLLA 200 (325)
T ss_pred HHHHHhccC----------hHHHHHHHHHcCCCHHHH
Confidence 887753211 112556788899999633
No 162
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.46 E-value=0.0011 Score=64.43 Aligned_cols=120 Identities=19% Similarity=0.277 Sum_probs=74.3
Q ss_pred cchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhh------------------
Q 001993 182 GRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVR------------------ 243 (985)
Q Consensus 182 Gr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~------------------ 243 (985)
|-+...+.+.+.+..+. -+..+.++|+.|+||+++|..++..-.-.
T Consensus 1 gq~~~~~~L~~~~~~~~----------------l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~ 64 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR----------------LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEE 64 (162)
T ss_dssp S-HHHHHHHHHHHHCTC------------------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCC----------------cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHh
Confidence 44556667777766332 34578999999999999999987631101
Q ss_pred ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhh
Q 001993 244 NHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGC 318 (985)
Q Consensus 244 ~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~ 318 (985)
.......|+.-... ......+++. .+.+.+ .++.=++|+||++......++.++..
T Consensus 65 ~~~~d~~~~~~~~~------------------~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~ 125 (162)
T PF13177_consen 65 GNHPDFIIIKPDKK------------------KKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKT 125 (162)
T ss_dssp T-CTTEEEEETTTS------------------SSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHH
T ss_pred ccCcceEEEecccc------------------cchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHH
Confidence 12233444432221 0012333333 222222 24567899999988888889999999
Q ss_pred hcCCCCCcEEEEEcCchh
Q 001993 319 LRCGSKESRILVTTRNEK 336 (985)
Q Consensus 319 l~~~~~gs~iivTtR~~~ 336 (985)
+.....++.+|++|.+..
T Consensus 126 LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 126 LEEPPENTYFILITNNPS 143 (162)
T ss_dssp HHSTTTTEEEEEEES-GG
T ss_pred hcCCCCCEEEEEEECChH
Confidence 998888999999988765
No 163
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.45 E-value=0.00093 Score=82.93 Aligned_cols=154 Identities=18% Similarity=0.215 Sum_probs=84.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccC------CceEE-
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHF------NEKIW- 251 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~~~w- 251 (985)
.++||+.++.+++..|.... ..-+.++|++|+|||++|+.++.. +...+ ...+|
T Consensus 174 ~~igr~~ei~~~~~~l~r~~-----------------~~n~lL~G~pGvGKT~l~~~la~~--i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRT-----------------KNNPVLIGEPGVGKTAIVEGLAQR--IVNGDVPESLKNKRLLA 234 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCC-----------------CCceEEEcCCCCCHHHHHHHHHHH--HhccCCchhhcCCeEEE
Confidence 58999999999999997433 234568999999999999999873 32211 22233
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-c-CceEEEEecCCCCCC-----c--ccHHHHHhhhcCC
Q 001993 252 VCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI-E-GKKFFLVLDDVWTEE-----P--QNWEQLLGCLRCG 322 (985)
Q Consensus 252 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~-~k~~LlVlDdv~~~~-----~--~~~~~l~~~l~~~ 322 (985)
+.+ ..+ +.+.... .+.+.....+.+.+ + +++.+|++|+++.-. . .+..+++......
T Consensus 235 l~~------~~l-------~a~~~~~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~ 300 (852)
T TIGR03346 235 LDM------GAL-------IAGAKYR-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR 300 (852)
T ss_pred eeH------HHH-------hhcchhh-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc
Confidence 221 111 1111111 12222222222222 2 468999999996321 0 0111222222111
Q ss_pred CCCcEEEEEcCchhhHHhhcC-----cccccccCCCCChHHHHHHHHHH
Q 001993 323 SKESRILVTTRNEKVAIAIGT-----TKFNIIPIELLSDEDCWSIFSQL 366 (985)
Q Consensus 323 ~~gs~iivTtR~~~v~~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~ 366 (985)
..-++|-+|........+.. ..+..+.+...+.++...++...
T Consensus 301 -g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 301 -GELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred -CceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 22355655555543221111 12356889999999999988764
No 164
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.43 E-value=0.002 Score=70.86 Aligned_cols=139 Identities=19% Similarity=0.226 Sum_probs=86.1
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 294 (985)
....+.|+|..|.|||.|++.+.+ ......+....+.++ .+.....++..+.. .-...+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~----se~f~~~~v~a~~~---------~~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLT----SEDFTNDFVKALRD---------NEMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEecc----HHHHHHHHHHHHHh---------hhHHHHHHhh--
Confidence 467899999999999999999999 555555533333332 23444444444422 1223344444
Q ss_pred ceEEEEecCCCCCC-cccH-HHHHhhhcC-CCCCcEEEEEcCch---------hhHHhhcCcccccccCCCCChHHHHHH
Q 001993 295 KKFFLVLDDVWTEE-PQNW-EQLLGCLRC-GSKESRILVTTRNE---------KVAIAIGTTKFNIIPIELLSDEDCWSI 362 (985)
Q Consensus 295 k~~LlVlDdv~~~~-~~~~-~~l~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~~~l~~L~~~e~~~L 362 (985)
.-=++++||++-.. .+.| +.+...+.. ...|-.||+|++.. .+...+... -++++.+.+.+....+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~G--l~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWG--LVVEIEPPDDETRLAI 252 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhce--eEEeeCCCCHHHHHHH
Confidence 33488999996421 1122 223333331 12344899998653 344445555 6899999999999999
Q ss_pred HHHHhcCCCC
Q 001993 363 FSQLALSRRL 372 (985)
Q Consensus 363 f~~~~~~~~~ 372 (985)
+.+++.....
T Consensus 253 L~kka~~~~~ 262 (408)
T COG0593 253 LRKKAEDRGI 262 (408)
T ss_pred HHHHHHhcCC
Confidence 9987765543
No 165
>PRK10536 hypothetical protein; Provisional
Probab=97.40 E-value=0.0028 Score=65.09 Aligned_cols=136 Identities=19% Similarity=0.213 Sum_probs=75.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEE--e--
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVC--V-- 254 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~--~-- 254 (985)
.+.+|......++.++.. ..+|.++|++|.|||+||..+..+.-..+.|+.++-.. +
T Consensus 56 ~i~p~n~~Q~~~l~al~~-------------------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ 116 (262)
T PRK10536 56 PILARNEAQAHYLKAIES-------------------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA 116 (262)
T ss_pred cccCCCHHHHHHHHHHhc-------------------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc
Confidence 567889999999998862 23999999999999999999887533344455443321 1
Q ss_pred CCC--C---CHHHH----HHHHHHHhcCCCCCCCCHHHHHH--------HHHHHhcCceE---EEEecCCCCCCcccHHH
Q 001993 255 SEP--F---DDIRI----AKAILESLKGSATNAVESETVLK--------QLRESIEGKKF---FLVLDDVWTEEPQNWEQ 314 (985)
Q Consensus 255 s~~--~---~~~~~----~~~i~~~l~~~~~~~~~~~~~~~--------~l~~~l~~k~~---LlVlDdv~~~~~~~~~~ 314 (985)
.+. | +..+- +..+...+..- ......+.... .-..+++|+.+ +||+|++.+.+.. .
T Consensus 117 ge~LGfLPG~~~eK~~p~~~pi~D~L~~~-~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~---~ 192 (262)
T PRK10536 117 DEDLGFLPGDIAEKFAPYFRPVYDVLVRR-LGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAA---Q 192 (262)
T ss_pred hhhhCcCCCCHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHH---H
Confidence 110 0 11111 11111111100 00000111100 01135566654 9999999776543 4
Q ss_pred HHhhhcCCCCCcEEEEEcCchhh
Q 001993 315 LLGCLRCGSKESRILVTTRNEKV 337 (985)
Q Consensus 315 l~~~l~~~~~gs~iivTtR~~~v 337 (985)
+...+...+.+|++|+|--..++
T Consensus 193 ~k~~ltR~g~~sk~v~~GD~~Qi 215 (262)
T PRK10536 193 MKMFLTRLGENVTVIVNGDITQC 215 (262)
T ss_pred HHHHHhhcCCCCEEEEeCChhhc
Confidence 44444555689999998754433
No 166
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.40 E-value=4.2e-05 Score=87.30 Aligned_cols=83 Identities=33% Similarity=0.412 Sum_probs=46.5
Q ss_pred ccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecccccccccccCCCcCCCCC
Q 001993 620 GIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLT 699 (985)
Q Consensus 620 ~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~ 699 (985)
.++.+.+|.+|++.+|. |..+...+..+.+|++|++++|. +..+. ++..|+.|+.|++.+|.+..+. ++..++
T Consensus 90 ~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~L~l~~N~i~~~~----~~~~l~ 162 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKELNLSGNLISDIS----GLESLK 162 (414)
T ss_pred ccccccceeeeeccccc-hhhcccchhhhhcchheeccccc-ccccc-chhhccchhhheeccCcchhcc----CCccch
Confidence 35556666666666666 55555445566666666666665 55553 3555666666666655543322 233355
Q ss_pred CCCccCceEe
Q 001993 700 GLRTLGAFVA 709 (985)
Q Consensus 700 ~L~~L~~~~~ 709 (985)
+|+.+++..+
T Consensus 163 ~L~~l~l~~n 172 (414)
T KOG0531|consen 163 SLKLLDLSYN 172 (414)
T ss_pred hhhcccCCcc
Confidence 5555555443
No 167
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.39 E-value=4.2e-05 Score=79.57 Aligned_cols=255 Identities=21% Similarity=0.181 Sum_probs=129.5
Q ss_pred cccCCCCceEEEccCcCCcc-hhhhHHHhhccCCcceeecCCC------CCCCCcc-------cccCCCCCeEecCCCCC
Q 001993 572 MVYDETKLRSLVLDQRLSFK-PRIALSKLFDRLTCLRSIDGLP------VGQIPKG-------IKKLIHLRYLALGENPW 637 (985)
Q Consensus 572 ~~~~~~~Lr~L~l~~~~~~~-~~~~~~~~~~~l~~Lr~L~l~~------~~~lp~~-------i~~l~~Lr~L~L~~~~~ 637 (985)
....+..+..+.+++|.... ....+.+.+.+.+.|+.-+++. ...+|+. +-..++|++|+||.|-
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA- 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA- 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc-
Confidence 33456677788888875321 1223455567777888877771 2233432 3344577777777775
Q ss_pred cc-c----cchhhcCCCCCcEeeccCcccccccch-hhhhccccceeecccccccccccCCCcCCCCCCCCccCceEecC
Q 001993 638 IK-E----LPEALCELCNLQTLDVSLCHYLKRLPE-RIGQLINLRHLMNSKEEWSRLSYMPRGMERLTGLRTLGAFVASG 711 (985)
Q Consensus 638 i~-~----lP~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~L~~L~~~~~~~ 711 (985)
+. . +-.-+.++.+|+.|.|.+|. +...-. .++. -|.+|..+ .-++.-+.|+++.+..+..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~--al~~l~~~-----------kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGR--ALFELAVN-----------KKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHH--HHHHHHHH-----------hccCCCcceEEEEeecccc
Confidence 32 1 22335566777777777665 332211 1111 12222111 1122334455554443332
Q ss_pred CCcccc--cCCchhhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCC
Q 001993 712 GKSSKA--CSSLKSLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPS 789 (985)
Q Consensus 712 ~~~~~~--~~~l~~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~ 789 (985)
...+.. ...++..+.|..+ .+..+.+..- -..+....+..|++|+.|+|+.|.... .-....-..++..+
T Consensus 170 en~ga~~~A~~~~~~~~leev--r~~qN~I~~e-----G~~al~eal~~~~~LevLdl~DNtft~-egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEV--RLSQNGIRPE-----GVTALAEALEHCPHLEVLDLRDNTFTL-EGSVALAKALSSWP 241 (382)
T ss_pred ccccHHHHHHHHHhccccceE--EEecccccCc-----hhHHHHHHHHhCCcceeeecccchhhh-HHHHHHHHHhcccc
Confidence 221110 0122333333333 2222222110 112444557778888888888664110 11122334456667
Q ss_pred CCCeEEEeeccCCCCCC--CChhhh-ccccccEEeEeccCCCCc----C-CCCCCCCccceeeccCCC
Q 001993 790 SLEKLGIYGYAGDTISP--TSDWML-SLAKLRVLTLRFCNECEC----L-PPLGKLPCLETLVLEGMS 849 (985)
Q Consensus 790 ~L~~L~l~~~~~~~~~~--~p~~~~-~l~~L~~L~L~~~~~~~~----l-~~l~~l~~L~~L~L~~~~ 849 (985)
+|+.|++.+|....-.. +-..+. ..++|+.|.|.+|..-.. + -+....|.|+.|+|++|.
T Consensus 242 ~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 242 HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred hheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 89999998887543210 011111 578899999999853221 1 135568999999999875
No 168
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.0064 Score=65.54 Aligned_cols=165 Identities=13% Similarity=0.102 Sum_probs=97.3
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhc-------cCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRN-------HFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQ 287 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 287 (985)
-...+.++|+.|+||+++|+.++..--=.. ....+-++..+.++|...+.. .........+++..
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p-------~~~~~~I~vdqiR~- 95 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKP-------EKEGKSITVEQIRQ- 95 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec-------CcCCCcCCHHHHHH-
Confidence 456889999999999999999865210000 000000111111111110000 00011233444432
Q ss_pred HHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchh-hHHhhcCcccccccCCCCChHHHHH
Q 001993 288 LRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWS 361 (985)
Q Consensus 288 l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~ 361 (985)
+.+.+ .+++-++|+|++........+.++..+.....++.+|++|.+.+ +...+.. ....+.+.+++.+++.+
T Consensus 96 l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S-RCq~~~~~~~~~~~~~~ 174 (319)
T PRK06090 96 CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS-RCQQWVVTPPSTAQAMQ 174 (319)
T ss_pred HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh-cceeEeCCCCCHHHHHH
Confidence 23332 34566899999988888888999999987777777777766543 3322211 12688999999999999
Q ss_pred HHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHH
Q 001993 362 IFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTL 401 (985)
Q Consensus 362 Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 401 (985)
.+.... . . .+..+++.++|.|+....+
T Consensus 175 ~L~~~~----~--~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 175 WLKGQG----I--T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HHHHcC----C--c-------hHHHHHHHcCCCHHHHHHH
Confidence 886531 1 1 1346788999999976544
No 169
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.35 E-value=0.0073 Score=61.27 Aligned_cols=122 Identities=20% Similarity=0.251 Sum_probs=70.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.|..++.|++-...-- . .....-|.+||..|.|||++++.+.+. ....==.. |.+..
T Consensus 28 ~L~Gie~Qk~~l~~Nt~~Fl----------~---G~pannvLL~G~rGtGKSSlVkall~~--y~~~GLRl--Iev~k-- 88 (249)
T PF05673_consen 28 DLIGIERQKEALIENTEQFL----------Q---GLPANNVLLWGARGTGKSSLVKALLNE--YADQGLRL--IEVSK-- 88 (249)
T ss_pred HhcCHHHHHHHHHHHHHHHH----------c---CCCCcceEEecCCCCCHHHHHHHHHHH--HhhcCceE--EEECH--
Confidence 79999999988876433211 0 123456788999999999999999883 22111111 22211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCC-CCcccHHHHHhhhcCC----CCCcEEEEEcC
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWT-EEPQNWEQLLGCLRCG----SKESRILVTTR 333 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~----~~gs~iivTtR 333 (985)
.+-.+...+.+.++. ...||+|++||+.= ........+...+..+ .....|..||-
T Consensus 89 -----------------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSN 149 (249)
T PF05673_consen 89 -----------------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSN 149 (249)
T ss_pred -----------------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecc
Confidence 122334444444442 35799999999852 3334566666666522 23445555655
Q ss_pred chhhH
Q 001993 334 NEKVA 338 (985)
Q Consensus 334 ~~~v~ 338 (985)
.++..
T Consensus 150 RRHLv 154 (249)
T PF05673_consen 150 RRHLV 154 (249)
T ss_pred hhhcc
Confidence 55543
No 170
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.34 E-value=0.00026 Score=77.55 Aligned_cols=68 Identities=18% Similarity=0.171 Sum_probs=51.7
Q ss_pred cCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCCCcCCCCCCCCccceeeccCCCCceEeCCc
Q 001993 783 ECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNECECLPPLGKLPCLETLVLEGMSSVKRLGNG 857 (985)
Q Consensus 783 ~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~l~~~ 857 (985)
.-+..+.++..|++++|....+ |. ...+|+.|.+++|..++.+|..- .++|+.|.+.+|..+..+|..
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~sL---P~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIESL---PV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCccc---CC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccccc
Confidence 3355568999999999976666 62 23479999999998888877421 368999999999877766653
No 171
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.33 E-value=0.0013 Score=81.41 Aligned_cols=155 Identities=17% Similarity=0.187 Sum_probs=83.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccC------Cce-EE
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHF------NEK-IW 251 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~~-~w 251 (985)
.++||+.++.++++.|.... ..-+.++|.+|+|||+||+.++.. +.... ... ++
T Consensus 179 ~vigr~~ei~~~i~iL~r~~-----------------~~n~lL~G~pGvGKT~l~~~la~~--i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRRT-----------------KNNPVLIGEPGVGKTAIVEGLAQR--IINGEVPEGLKGRRVLA 239 (857)
T ss_pred cCCCCHHHHHHHHHHHhcCC-----------------cCceEEECCCCCCHHHHHHHHHHH--hhcCCCchhhCCCEEEE
Confidence 58999999999999997433 235679999999999999999873 32111 222 22
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEecCCCCCC-------cccHHH-HHhhhcCC
Q 001993 252 VCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI-EGKKFFLVLDDVWTEE-------PQNWEQ-LLGCLRCG 322 (985)
Q Consensus 252 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-------~~~~~~-l~~~l~~~ 322 (985)
+.++. + +.+......-.+.+...+.+.- .+.+.+|++|+++.-. ...-.. +.+.+..
T Consensus 240 l~l~~------l-------~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~- 305 (857)
T PRK10865 240 LDMGA------L-------VAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR- 305 (857)
T ss_pred Eehhh------h-------hhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc-
Confidence 32221 0 0111111111122222232222 2578999999995421 001122 3333321
Q ss_pred CCCcEEEEEcCchhhHHhhcC-----cccccccCCCCChHHHHHHHHHHh
Q 001993 323 SKESRILVTTRNEKVAIAIGT-----TKFNIIPIELLSDEDCWSIFSQLA 367 (985)
Q Consensus 323 ~~gs~iivTtR~~~v~~~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~~ 367 (985)
..-++|-+|...+....+.. ..++.+.+..-+.++...+++...
T Consensus 306 -g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 306 -GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred -CCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 23456666665543221110 122456677778888888886543
No 172
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.0053 Score=67.11 Aligned_cols=164 Identities=12% Similarity=0.089 Sum_probs=98.0
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcch---hhhc-----cCCceEEEEeCCCCCHHHHHHHHHHHhcCCC-CCCCCHHHHH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDN---EVRN-----HFNEKIWVCVSEPFDDIRIAKAILESLKGSA-TNAVESETVL 285 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~---~~~~-----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~ 285 (985)
-..-..++|+.|+||+++|..++..- .-.. .-+.+-++....++|...+. ... ......+++.
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~--------p~~~~~~I~idqiR 94 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT--------PEKGKSSLGVDAVR 94 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe--------cccccccCCHHHHH
Confidence 45678899999999999999876521 0000 00001111122222221110 000 0123344443
Q ss_pred HHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchh-hHHh-hcCcccccccCCCCChHH
Q 001993 286 KQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEK-VAIA-IGTTKFNIIPIELLSDED 358 (985)
Q Consensus 286 ~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~-~~~~~~~~~~l~~L~~~e 358 (985)
+ +.+.+ .+++-++|+|+++.......+.++..+.....++.+|++|.+.+ +... ..-. ..+.+.+++.++
T Consensus 95 ~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRC--q~~~~~~~~~~~ 171 (334)
T PRK07993 95 E-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC--RLHYLAPPPEQY 171 (334)
T ss_pred H-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc--ccccCCCCCHHH
Confidence 3 22222 36777999999988777788889999987777777777776643 3322 2222 678999999999
Q ss_pred HHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHH
Q 001993 359 CWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVK 399 (985)
Q Consensus 359 ~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 399 (985)
+.+.+..... . . .+.+..++..++|.|....
T Consensus 172 ~~~~L~~~~~---~--~-----~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 172 ALTWLSREVT---M--S-----QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HHHHHHHccC---C--C-----HHHHHHHHHHcCCCHHHHH
Confidence 9988865321 1 1 1226678999999996443
No 173
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.30 E-value=0.0017 Score=76.23 Aligned_cols=49 Identities=24% Similarity=0.316 Sum_probs=39.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcc
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
+++|-+..++++..++....- +.....++.|+|++|+||||+++.++..
T Consensus 85 el~~~~~ki~~l~~~l~~~~~------------~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 85 ELAVHKKKIEEVETWLKAQVL------------ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HhcCcHHHHHHHHHHHHhccc------------ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999875430 0123468999999999999999999873
No 174
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.0012 Score=71.69 Aligned_cols=94 Identities=16% Similarity=0.196 Sum_probs=65.6
Q ss_pred CceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCch-hhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCC
Q 001993 294 GKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNE-KVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRL 372 (985)
Q Consensus 294 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 372 (985)
+++-++|+|+++......++.++..+.....++.+|++|.+. .+...+.. ....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~S-Rcq~i~~~~~~~~~~~~~L~~~~----~ 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILS-RCRQFPMTVPAPEAAAAWLAAQG----V 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHh-cCEEEEecCCCHHHHHHHHHHcC----C
Confidence 556689999999888889999999998777777666666553 33322211 12689999999999999887641 1
Q ss_pred CcccchhHHHHHHHHHHhcCCChhHHHHH
Q 001993 373 DIEESENFENIGRQIVSKCKGLPLAVKTL 401 (985)
Q Consensus 373 ~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 401 (985)
.. ...++..++|.|.....+
T Consensus 206 --~~-------~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 --AD-------ADALLAEAGGAPLAALAL 225 (342)
T ss_pred --Ch-------HHHHHHHcCCCHHHHHHH
Confidence 11 223577889999755433
No 175
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.29 E-value=0.008 Score=68.82 Aligned_cols=207 Identities=15% Similarity=0.150 Sum_probs=126.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchh---hhccCC--ceEEEE
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNE---VRNHFN--EKIWVC 253 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~f~--~~~wv~ 253 (985)
.+-+||.|..+|.+.+...-. . ....+++.|.|.+|.|||..+..|.+.-+ -++.-+ ..+.|+
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~---------~---~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveIN 464 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFIS---------D---QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEIN 464 (767)
T ss_pred cccchhHHHHHHHHHHHhhcC---------C---CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEc
Confidence 467899999999988874431 0 13445999999999999999999988422 112222 234556
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc-----CceEEEEecCCCCCCcccHHHHHhhhcCC-CCCcE
Q 001993 254 VSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE-----GKKFFLVLDDVWTEEPQNWEQLLGCLRCG-SKESR 327 (985)
Q Consensus 254 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~ 327 (985)
.-.-..+.+++..|...+.+.... .......+..++. .+++++++|+++..-....+-+...+.|. .++||
T Consensus 465 gm~l~~~~~~Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sK 541 (767)
T KOG1514|consen 465 GLRLASPREIYEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSK 541 (767)
T ss_pred ceeecCHHHHHHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCc
Confidence 566677999999999999876422 3344445555553 46789999988432222234455555543 56777
Q ss_pred EEEEcCc--hh---------hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChh
Q 001993 328 ILVTTRN--EK---------VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPL 396 (985)
Q Consensus 328 iivTtR~--~~---------v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 396 (985)
++|-+=- .+ +...++. ..+..+|.+.++-.++...+..+... -.....+-++++|+.-.|-.-.
T Consensus 542 Lvvi~IaNTmdlPEr~l~nrvsSRlg~---tRi~F~pYth~qLq~Ii~~RL~~~~~--f~~~aielvarkVAavSGDaRr 616 (767)
T KOG1514|consen 542 LVVIAIANTMDLPERLLMNRVSSRLGL---TRICFQPYTHEQLQEIISARLKGLDA--FENKAIELVARKVAAVSGDARR 616 (767)
T ss_pred eEEEEecccccCHHHHhccchhhhccc---eeeecCCCCHHHHHHHHHHhhcchhh--cchhHHHHHHHHHHhccccHHH
Confidence 6655421 11 2222222 35677788888877777666544321 2334445556666666666666
Q ss_pred HHHHHHhhh
Q 001993 397 AVKTLGSLL 405 (985)
Q Consensus 397 ai~~~~~~L 405 (985)
|+.+.-++.
T Consensus 617 aldic~RA~ 625 (767)
T KOG1514|consen 617 ALDICRRAA 625 (767)
T ss_pred HHHHHHHHH
Confidence 665554443
No 176
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.29 E-value=0.00029 Score=51.13 Aligned_cols=38 Identities=34% Similarity=0.399 Sum_probs=31.6
Q ss_pred CCCcEeeccCcccccccchhhhhccccceeecccccccc
Q 001993 649 CNLQTLDVSLCHYLKRLPERIGQLINLRHLMNSKEEWSR 687 (985)
Q Consensus 649 ~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~n~~~~ 687 (985)
++|++|++++|. +..+|..+++|++|+.|++++|..+.
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCCCCC
Confidence 479999999998 88999889999999999999765543
No 177
>PRK12377 putative replication protein; Provisional
Probab=97.28 E-value=0.00074 Score=70.09 Aligned_cols=102 Identities=24% Similarity=0.190 Sum_probs=58.9
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGK 295 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 295 (985)
...+.|+|.+|+|||+||..+++. .......++++++. +++..+-..... ....... .+.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~~----l~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDN----GQSGEKF----LQEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhc----cchHHHH----HHHh-cC
Confidence 357899999999999999999994 44444456777553 344444333211 1111222 2222 35
Q ss_pred eEEEEecCCCCCCcccHHH--HHhhhcCC-CCCcEEEEEcCc
Q 001993 296 KFFLVLDDVWTEEPQNWEQ--LLGCLRCG-SKESRILVTTRN 334 (985)
Q Consensus 296 ~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtR~ 334 (985)
--||||||+.......|.. +...+... .+.--+||||-.
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 6699999996544444543 44444322 222347888764
No 178
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.28 E-value=0.0074 Score=74.34 Aligned_cols=165 Identities=15% Similarity=0.223 Sum_probs=85.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.+.-+++|.+++.... . .+.....++.++|++|+|||++|+.+++ .....|- -++++...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~----------~-~~~~~~~~lll~GppG~GKT~lAk~iA~--~l~~~~~---~i~~~~~~ 384 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQK----------L-RGKMKGPILCLVGPPGVGKTSLGKSIAK--ALNRKFV---RFSLGGVR 384 (775)
T ss_pred hcCChHHHHHHHHHHHHHHH----------h-hcCCCCceEEEECCCCCCHHHHHHHHHH--HhcCCeE---EEeCCCcc
Confidence 58899999999988765321 0 0012335899999999999999999998 3333332 22333322
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcc----cHHHHHhhhcC--------C----
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQ----NWEQLLGCLRC--------G---- 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~----~~~~l~~~l~~--------~---- 322 (985)
+..++.. . ...........+...+... ..++-+++||+++..... ....+...+.. .
T Consensus 385 ~~~~i~g----~--~~~~~g~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~ 457 (775)
T TIGR00763 385 DEAEIRG----H--RRTYVGAMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDV 457 (775)
T ss_pred cHHHHcC----C--CCceeCCCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCc
Confidence 2222110 0 0111111122333334333 233347899999643211 12233333321 0
Q ss_pred ---CCCcEEEEEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHh
Q 001993 323 ---SKESRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLA 367 (985)
Q Consensus 323 ---~~gs~iivTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 367 (985)
..+.-+|.||.... +...+- ....++.+.+++.++-.++++++.
T Consensus 458 ~~d~s~v~~I~TtN~~~~i~~~L~-~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 458 PFDLSKVIFIATANSIDTIPRPLL-DRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred eeccCCEEEEEecCCchhCCHHHh-CCeeEEecCCCCHHHHHHHHHHHH
Confidence 02233445554432 111111 122578899999888888776654
No 179
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.25 E-value=0.0011 Score=72.23 Aligned_cols=150 Identities=17% Similarity=0.156 Sum_probs=79.7
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchh----hhccCCc-----eEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNE----VRNHFNE-----KIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVL 285 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~----~~~~f~~-----~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 285 (985)
-...+.++|+.|+||||+|+.++..-. ....-.| +-++....++|...+...=.+.-.+........+++.
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR 99 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVR 99 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHH
Confidence 456788999999999999999876310 0000000 1111111222211110000000000000112344443
Q ss_pred HHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchh-hHHhhcCcccccccCCCCChHHH
Q 001993 286 KQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDC 359 (985)
Q Consensus 286 ~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~ 359 (985)
+ +.+.+ .+++-++|+|++...+...-+.+...+.....+..+|++|.+.. +...+. .....+.+.+++.+++
T Consensus 100 ~-l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~-SRc~~~~~~~~~~~~~ 177 (325)
T PRK08699 100 E-IIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIK-SRCRKMVLPAPSHEEA 177 (325)
T ss_pred H-HHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHH-HHhhhhcCCCCCHHHH
Confidence 3 22322 24445566799987777777778887775555666777777654 332221 1236899999999999
Q ss_pred HHHHHHH
Q 001993 360 WSIFSQL 366 (985)
Q Consensus 360 ~~Lf~~~ 366 (985)
.+.+.+.
T Consensus 178 ~~~L~~~ 184 (325)
T PRK08699 178 LAYLRER 184 (325)
T ss_pred HHHHHhc
Confidence 9888653
No 180
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.25 E-value=0.0023 Score=71.54 Aligned_cols=187 Identities=17% Similarity=0.200 Sum_probs=95.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
++.|.+..+++|.+.+...-.. + .... ..+-..++-+.++|++|.|||++|+.+++. ....| +.+..
T Consensus 146 digGl~~~k~~l~~~v~~pl~~-~-~~~~--~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~-- 212 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTC-P-ELYE--QIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG-- 212 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcC-H-HHHH--hcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh--
Confidence 6889999888888766421100 0 0000 000134567899999999999999999983 32222 22211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC----------ccc----HHHHHhhhcC--C
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE----------PQN----WEQLLGCLRC--G 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~----~~~l~~~l~~--~ 322 (985)
.. +.....+ .....+...+.......+.+|++|+++... ... +..+...+.. .
T Consensus 213 --s~----l~~k~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 213 --SE----FVQKYLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred --HH----HHHHhcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 11 1111111 111122222333334678999999975310 011 1222222221 2
Q ss_pred CCCcEEEEEcCchhhH-Hhh-cCc-ccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001993 323 SKESRILVTTRNEKVA-IAI-GTT-KFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 323 ~~gs~iivTtR~~~v~-~~~-~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 395 (985)
..+..||.||...+.. ..+ ... -...+.+...+.++..++|+.+...... ....+ ..++++.+.|+.
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l--~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNL--SEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCC--CcccC----HHHHHHHcCCCC
Confidence 3456788888765432 222 111 1146788888888888888766543221 11222 345566666553
No 181
>PRK08181 transposase; Validated
Probab=97.24 E-value=0.00079 Score=70.81 Aligned_cols=100 Identities=18% Similarity=0.191 Sum_probs=57.1
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceE
Q 001993 218 IISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKF 297 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 297 (985)
-+.|+|++|+|||.||..+.+. .......++|+++ .+++..+.... .....+..... + .+.=
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~-----~~~~~~~~l~~----l-~~~d 169 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVAR-----RELQLESAIAK----L-DKFD 169 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHH-----hCCcHHHHHHH----H-hcCC
Confidence 5899999999999999999883 3333345566653 34444443321 11122222222 2 2345
Q ss_pred EEEecCCCCCCcccHH--HHHhhhcCCCCCcEEEEEcCch
Q 001993 298 FLVLDDVWTEEPQNWE--QLLGCLRCGSKESRILVTTRNE 335 (985)
Q Consensus 298 LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~iivTtR~~ 335 (985)
||||||+.......|. .+...+.....+..+||||...
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 9999999654333332 3444444222223589998754
No 182
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.20 E-value=0.0026 Score=72.73 Aligned_cols=174 Identities=18% Similarity=0.216 Sum_probs=89.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhcc-----CCceEEEE
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNH-----FNEKIWVC 253 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----f~~~~wv~ 253 (985)
++.|.+..+++|.+.+...-. ++. ... . .+-..++-+.++|++|.|||++|+.+++. .... +....|++
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~-~~~-l~~-~-~gl~~p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFL-HPE-LYR-E-YDLKPPKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLN 256 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhh-CHH-HHH-h-ccCCCCcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEe
Confidence 678899999999887642110 000 000 0 00123456899999999999999999984 3322 12344554
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEecCCCCCC-------ccc-----HHHHHhhhc
Q 001993 254 VSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI-EGKKFFLVLDDVWTEE-------PQN-----WEQLLGCLR 320 (985)
Q Consensus 254 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-------~~~-----~~~l~~~l~ 320 (985)
+... .++....+. .......+....++.. .+++++|+||+++..- ... ...+...+.
T Consensus 257 v~~~--------eLl~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 257 IKGP--------ELLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred ccch--------hhcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 4331 111111000 0000111222222211 3578999999996310 011 123333333
Q ss_pred CC--CCCcEEEEEcCchhh-HHhhc-Ccc-cccccCCCCChHHHHHHHHHHhc
Q 001993 321 CG--SKESRILVTTRNEKV-AIAIG-TTK-FNIIPIELLSDEDCWSIFSQLAL 368 (985)
Q Consensus 321 ~~--~~gs~iivTtR~~~v-~~~~~-~~~-~~~~~l~~L~~~e~~~Lf~~~~~ 368 (985)
.. ..+..||.||-..+. ...+- ... ...+++...+.++..++|+.+..
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 11 234456666654432 22221 111 14589999999999999988763
No 183
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.16 E-value=0.01 Score=62.88 Aligned_cols=108 Identities=19% Similarity=0.259 Sum_probs=58.6
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHH------------HHHhcCCC---CCCCCHH
Q 001993 218 IISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAI------------LESLKGSA---TNAVESE 282 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i------------~~~l~~~~---~~~~~~~ 282 (985)
-|.|.|++|+|||+||+.++. .... ..+.+++....+..+++... ........ .......
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 97 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDN 97 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCc
Confidence 467999999999999999986 2221 23455665555544443221 00000000 0000001
Q ss_pred HHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCC----------------CCCcEEEEEcCch
Q 001993 283 TVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCG----------------SKESRILVTTRNE 335 (985)
Q Consensus 283 ~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~----------------~~gs~iivTtR~~ 335 (985)
. +.... .+...|++|++.....+.+..+...+..+ .++.+||.|+-..
T Consensus 98 ~----l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~ 161 (262)
T TIGR02640 98 R----LTLAV-REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV 161 (262)
T ss_pred h----HHHHH-HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc
Confidence 1 11111 23468999999877666666677666421 1255788887753
No 184
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.14 E-value=0.0052 Score=75.25 Aligned_cols=125 Identities=22% Similarity=0.255 Sum_probs=71.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++|-+..++.|.+.+....-+ ...+.....++.++|+.|+|||+||+.++. .. +...+.++.++-.
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g--------~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~--~l---~~~~~~~d~se~~ 521 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAG--------LGNPNKPVGSFLFTGPTGVGKTELAKQLAE--AL---GVHLERFDMSEYM 521 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcC--------CCCCCCCceeEEEECCCCccHHHHHHHHHH--Hh---cCCeEEEeCchhh
Confidence 5889888888888887743200 000122345789999999999999999987 23 2234555544422
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC-ceEEEEecCCCCCCcccHHHHHhhhcCC
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEG-KKFFLVLDDVWTEEPQNWEQLLGCLRCG 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~~~~~~l~~~l~~~ 322 (985)
+.. .+.. +.+........++ ...+.+.++. ..-+++||+++....+.++.+...+..+
T Consensus 522 ~~~----~~~~-lig~~~gyvg~~~-~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 522 EKH----TVSR-LIGAPPGYVGFEQ-GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred hcc----cHHH-HhcCCCCCcccch-hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 111 1111 2222111111111 1123333333 3459999999887777788888777643
No 185
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.13 E-value=0.0055 Score=75.83 Aligned_cols=140 Identities=21% Similarity=0.263 Sum_probs=78.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++|.+..++.|...+.....+ ...++....++.++|+.|+|||++|+.+++. .-..-...+.+..+.-.
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~g--------l~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAG--------LSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFM 638 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhc--------ccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhh
Confidence 6899999999998888643200 0001223357899999999999999999862 22112233444443321
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC-ceEEEEecCCCCCCcccHHHHHhhhcCCC-----------CCc
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEG-KKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------KES 326 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs 326 (985)
. . .....+.+........+. ...+.+.++. ..-+|+|||+.......++.+...+..+. ..+
T Consensus 639 ~-~----~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~ 712 (857)
T PRK10865 639 E-K----HSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNT 712 (857)
T ss_pred h-h----hhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeeccc
Confidence 1 1 112223232222111111 1112233322 33699999998777777888887775431 123
Q ss_pred EEEEEcCc
Q 001993 327 RILVTTRN 334 (985)
Q Consensus 327 ~iivTtR~ 334 (985)
-||+||..
T Consensus 713 iiI~TSN~ 720 (857)
T PRK10865 713 VVIMTSNL 720 (857)
T ss_pred EEEEeCCc
Confidence 37778775
No 186
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.12 E-value=0.00033 Score=69.15 Aligned_cols=100 Identities=23% Similarity=0.320 Sum_probs=52.3
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
.-+.|+|.+|+|||.||..+.+. ....=..+.|+++ .+++.. +.... ......... +.+. +-
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~~------~~L~~~----l~~~~-~~~~~~~~~----~~l~-~~ 109 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFITA------SDLLDE----LKQSR-SDGSYEELL----KRLK-RV 109 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEH------HHHHHH----HHCCH-CCTTHCHHH----HHHH-TS
T ss_pred eEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEeec------Cceecc----ccccc-cccchhhhc----Cccc-cc
Confidence 56999999999999999999984 2222234667753 333333 33221 111222222 2233 33
Q ss_pred EEEEecCCCCCCcccHHH--HHhhhcCC-CCCcEEEEEcCch
Q 001993 297 FFLVLDDVWTEEPQNWEQ--LLGCLRCG-SKESRILVTTRNE 335 (985)
Q Consensus 297 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtR~~ 335 (985)
=||||||+.......|.. +...+... .++ .+||||...
T Consensus 110 dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 110 DLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp SCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred cEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 578899997655445543 22222211 123 588888753
No 187
>CHL00176 ftsH cell division protein; Validated
Probab=97.10 E-value=0.0065 Score=72.02 Aligned_cols=184 Identities=20% Similarity=0.229 Sum_probs=95.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.++..+++.+.+..-..+.... ..+...++-|.++|++|.|||++|+.+++. ... -|+.++.
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~-----~~g~~~p~gVLL~GPpGTGKT~LAralA~e--~~~-----p~i~is~-- 249 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFT-----AVGAKIPKGVLLVGPPGTGKTLLAKAIAGE--AEV-----PFFSISG-- 249 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHh-----hccCCCCceEEEECCCCCCHHHHHHHHHHH--hCC-----CeeeccH--
Confidence 57888766666555432211000000 000123456999999999999999999873 221 2333321
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC----------cccHH----HHHhhhc--CC
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE----------PQNWE----QLLGCLR--CG 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~----~l~~~l~--~~ 322 (985)
.++. ....+ .....+...+.+.....+++|++||++... ...+. .+...+. ..
T Consensus 250 --s~f~----~~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 250 --SEFV----EMFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred --HHHH----HHhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 1111 11101 111223334445556788999999995321 11222 2222222 12
Q ss_pred CCCcEEEEEcCchhhHH-hhc-Cc-ccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCC
Q 001993 323 SKESRILVTTRNEKVAI-AIG-TT-KFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKG 393 (985)
Q Consensus 323 ~~gs~iivTtR~~~v~~-~~~-~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~G 393 (985)
..+..||.||...+... .+- .. -...+.+...+.++-.++++.++..... .. ......+++.+.|
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~--~~----d~~l~~lA~~t~G 386 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL--SP----DVSLELIARRTPG 386 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc--ch----hHHHHHHHhcCCC
Confidence 34556777776644322 221 11 0146788888889988999887654321 11 2235667778777
No 188
>PRK06921 hypothetical protein; Provisional
Probab=97.08 E-value=0.0026 Score=67.19 Aligned_cols=99 Identities=17% Similarity=0.275 Sum_probs=55.9
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhcc-CCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNH-FNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 294 (985)
...+.++|..|+|||+||..+++. .... -..++|++.. +++..+.... +.....+ +.+ .
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~-~~~-~ 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV------EGFGDLKDDF----------DLLEAKL-NRM-K 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH------HHHHHHHHHH----------HHHHHHH-HHh-c
Confidence 457899999999999999999984 3333 3456777642 2333332221 1111112 222 2
Q ss_pred ceEEEEecCCC-----CCCcccHHH--HHhhhcCC-CCCcEEEEEcCc
Q 001993 295 KKFFLVLDDVW-----TEEPQNWEQ--LLGCLRCG-SKESRILVTTRN 334 (985)
Q Consensus 295 k~~LlVlDdv~-----~~~~~~~~~--l~~~l~~~-~~gs~iivTtR~ 334 (985)
+-=||||||+. .+....|.. +...+... ..+..+||||..
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 34699999993 222334543 44444322 234458888864
No 189
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0021 Score=75.82 Aligned_cols=128 Identities=23% Similarity=0.309 Sum_probs=79.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++|-+..+..|.+.+....-+ -..|+....+....|+.|||||.||+.++.. .-+.=+..+-+..|+-
T Consensus 492 rViGQd~AV~avs~aIrraRaG--------L~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy- 560 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAG--------LGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEY- 560 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcC--------CCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHH-
Confidence 6899999999999988765411 1122456678899999999999999999872 2111123333333321
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceE-EEEecCCCCCCcccHHHHHhhhcCC
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKF-FLVLDDVWTEEPQNWEQLLGCLRCG 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~ 322 (985)
.-+.-++.|-+.++...--++ ...+-+..+.++| +|.||++....++.++-++..+..+
T Consensus 561 ----~EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 561 ----MEKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred ----HHHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 112223334444433222222 2334455567777 8889999877777888888888755
No 190
>PRK06526 transposase; Provisional
Probab=97.06 E-value=0.0013 Score=68.96 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=53.7
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
.-+.|+|++|+|||+||..+.+... +..+ .+.|+ +..++...+..... . . .....+.+. .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~-~~g~-~v~f~------t~~~l~~~l~~~~~----~-~---~~~~~l~~l--~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC-QAGH-RVLFA------TAAQWVARLAAAHH----A-G---RLQAELVKL--GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH-HCCC-chhhh------hHHHHHHHHHHHHh----c-C---cHHHHHHHh--ccC
Confidence 4689999999999999999987422 2222 33443 23344444433211 1 1 111222222 234
Q ss_pred EEEEecCCCCCCcccHH--HHHhhhcCC-CCCcEEEEEcCch
Q 001993 297 FFLVLDDVWTEEPQNWE--QLLGCLRCG-SKESRILVTTRNE 335 (985)
Q Consensus 297 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtR~~ 335 (985)
-+||+||+.......+. .+...+... ..++ +|+||..+
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 68999999654322332 244444321 2344 88888754
No 191
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.06 E-value=0.002 Score=65.78 Aligned_cols=38 Identities=32% Similarity=0.481 Sum_probs=30.9
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEe
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCV 254 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 254 (985)
.+-.++|+|..|+||||++..+.. .....|..+++++-
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 345789999999999999999987 57778877776643
No 192
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.05 E-value=0.00035 Score=83.33 Aligned_cols=127 Identities=26% Similarity=0.207 Sum_probs=83.1
Q ss_pred CeEEEEEEcCCCCCccCCCccccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCe
Q 001993 552 KARHLMITGETRSEMVPFPSMVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRY 629 (985)
Q Consensus 552 ~~r~l~l~~~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~ 629 (985)
+.+++.+.+...-..........-+|.|++|.+.+.... .......+.++++|+.||++ ++..+ .+|+.|++|+.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~--~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD--NDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceec--chhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 455666655433111111122345789999999887542 22245567889999999998 56666 78899999999
Q ss_pred EecCCCCCccccc--hhhcCCCCCcEeeccCcccccccchhh-------hhccccceeecccc
Q 001993 630 LALGENPWIKELP--EALCELCNLQTLDVSLCHYLKRLPERI-------GQLINLRHLMNSKE 683 (985)
Q Consensus 630 L~L~~~~~i~~lP--~~i~~L~~L~~L~l~~~~~l~~lP~~i-------~~L~~L~~L~l~~n 683 (985)
|.+++-. +..-+ ..+.+|++|++||+|...... .+.-+ ..|++||.||.+++
T Consensus 200 L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 200 LSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred HhccCCC-CCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCc
Confidence 9888766 44322 357789999999999876332 22111 23889999988854
No 193
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.04 E-value=0.0067 Score=68.21 Aligned_cols=120 Identities=23% Similarity=0.273 Sum_probs=74.4
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceE
Q 001993 218 IISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKF 297 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 297 (985)
++.|.|+-++||||+++.+... .... .+++...+......-+.+ ....+.+.-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d-----------------~~~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLD-----------------LLRAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHH-----------------HHHHHHHhhccCCc
Confidence 9999999999999999666652 2222 556654332111111111 11111111122778
Q ss_pred EEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchhhHH-----hhcCcccccccCCCCChHHHHHHH
Q 001993 298 FLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEKVAI-----AIGTTKFNIIPIELLSDEDCWSIF 363 (985)
Q Consensus 298 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~-----~~~~~~~~~~~l~~L~~~e~~~Lf 363 (985)
+++||.|.. ...|......+...++. +|++|+-+..... .... ....+++-||+..|-..+-
T Consensus 97 yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~G-R~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 97 YIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAG-RGKDLELYPLSFREFLKLK 163 (398)
T ss_pred eEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCC-CceeEEECCCCHHHHHhhc
Confidence 999999954 56898888888766665 8888887654332 2222 2367899999999976654
No 194
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=6e-05 Score=76.38 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=35.9
Q ss_pred CCCCeEecCCCCCccccch--hh-cCCCCCcEeeccCcccccc---cchhhhhccccceeeccccc
Q 001993 625 IHLRYLALGENPWIKELPE--AL-CELCNLQTLDVSLCHYLKR---LPERIGQLINLRHLMNSKEE 684 (985)
Q Consensus 625 ~~Lr~L~L~~~~~i~~lP~--~i-~~L~~L~~L~l~~~~~l~~---lP~~i~~L~~L~~L~l~~n~ 684 (985)
.-|..|.+.++. |...-. .+ ...++++.|||.+|. +.. +-.-+.+|+.|+.|+++.|.
T Consensus 45 ra~ellvln~~~-id~~gd~~~~~~~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~ 108 (418)
T KOG2982|consen 45 RALELLVLNGSI-IDNEGDVMLFGSSVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNS 108 (418)
T ss_pred cchhhheecCCC-CCcchhHHHHHHHhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCc
Confidence 344456666665 443322 12 356789999999987 543 22334678899999998443
No 195
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.02 E-value=0.0035 Score=64.97 Aligned_cols=103 Identities=18% Similarity=0.243 Sum_probs=58.9
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGK 295 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 295 (985)
...+.++|.+|+|||+||..+++. ....-..++++++ .++...+-..... .....+. +.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it~------~~l~~~l~~~~~~---~~~~~~~----~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIITV------ADIMSAMKDTFSN---SETSEEQ----LLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEH------HHHHHHHHHHHhh---ccccHHH----HHHHhc-c
Confidence 357899999999999999999984 3333345566643 4444444433311 1112222 223344 3
Q ss_pred eEEEEecCCCCCCcccHHH--HHhhhcCC-CCCcEEEEEcCc
Q 001993 296 KFFLVLDDVWTEEPQNWEQ--LLGCLRCG-SKESRILVTTRN 334 (985)
Q Consensus 296 ~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtR~ 334 (985)
.=+||+||+.......|.. +...+... ...-.+||||-.
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4488889997665566664 33333321 123357777764
No 196
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.01 E-value=0.0036 Score=67.92 Aligned_cols=101 Identities=18% Similarity=0.231 Sum_probs=65.9
Q ss_pred hHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccC-Cc-eEEEEeCC-CCCHHH
Q 001993 186 LQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHF-NE-KIWVCVSE-PFDDIR 262 (985)
Q Consensus 186 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~-~~wv~~s~-~~~~~~ 262 (985)
...++++.+..-. .-+.+.|+|.+|+|||||++.+++. +.... +. ++|+.+.+ ..++.+
T Consensus 119 ~~~RvID~l~PiG----------------kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~d 180 (380)
T PRK12608 119 LSMRVVDLVAPIG----------------KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTD 180 (380)
T ss_pred hhHhhhhheeecC----------------CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHH
Confidence 4456788877433 3356799999999999999999883 33322 33 46766665 456788
Q ss_pred HHHHHHHHhcCCCCCCCCHHH-----HHHHHHHHh--cCceEEEEecCC
Q 001993 263 IAKAILESLKGSATNAVESET-----VLKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 263 ~~~~i~~~l~~~~~~~~~~~~-----~~~~l~~~l--~~k~~LlVlDdv 304 (985)
+.+.+...+.....+...... ....+.+++ ++++++||+|++
T Consensus 181 f~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 181 MRRSVKGEVYASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred HHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 888888877654433322221 112222333 589999999999
No 197
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.01 E-value=0.0039 Score=77.49 Aligned_cols=138 Identities=19% Similarity=0.268 Sum_probs=79.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++|.+..++.+.+.+.....+ ...+.....++.++|+.|+|||++|+.++.. ....-...+.++.+.-.
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~g--------l~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~ 635 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAG--------LSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYM 635 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhcc--------CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhc
Confidence 6899999999999988753200 0001223467889999999999999999872 22222233444444322
Q ss_pred CHHHHHHHHHHHhcCCCCCC---CCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC-----------C
Q 001993 259 DDIRIAKAILESLKGSATNA---VESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------K 324 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~ 324 (985)
+... ...+.+..... .+...+...++ +....+|+||++.....+.++.+...+..+. .
T Consensus 636 ~~~~-----~~~l~g~~~g~~g~~~~g~l~~~v~---~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~r 707 (852)
T TIGR03346 636 EKHS-----VARLIGAPPGYVGYEEGGQLTEAVR---RKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFR 707 (852)
T ss_pred ccch-----HHHhcCCCCCccCcccccHHHHHHH---cCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecC
Confidence 2111 11222222111 11122333222 1233599999998888888888888775441 2
Q ss_pred CcEEEEEcCc
Q 001993 325 ESRILVTTRN 334 (985)
Q Consensus 325 gs~iivTtR~ 334 (985)
.+-||+||..
T Consensus 708 n~iiI~TSn~ 717 (852)
T TIGR03346 708 NTVIIMTSNL 717 (852)
T ss_pred CcEEEEeCCc
Confidence 3347777764
No 198
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.01 E-value=0.0076 Score=73.45 Aligned_cols=165 Identities=14% Similarity=0.240 Sum_probs=90.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+.+|.++-+++|+++|..... .+.....++.++|++|+||||+|+.++. .....| +-++.+...
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~-----------~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~---~~i~~~~~~ 386 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSR-----------VNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKY---VRMALGGVR 386 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHh-----------cccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE---EEEEcCCCC
Confidence 689999999999998874220 0012345899999999999999999997 333332 123333333
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCccc----HHHHHhhhcCCC-----------
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQN----WEQLLGCLRCGS----------- 323 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~----~~~l~~~l~~~~----------- 323 (985)
+...+...- +.. .......+...+... ....-+++||.++...... .+.+...+....
T Consensus 387 d~~~i~g~~-~~~-----~g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~ 459 (784)
T PRK10787 387 DEAEIRGHR-RTY-----IGSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEV 459 (784)
T ss_pred CHHHhccch-hcc-----CCCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccc
Confidence 332221110 000 111122233333322 2234578999996533221 344555443211
Q ss_pred ----CCcEEEEEcCchhhHHhhcCcccccccCCCCChHHHHHHHHHHh
Q 001993 324 ----KESRILVTTRNEKVAIAIGTTKFNIIPIELLSDEDCWSIFSQLA 367 (985)
Q Consensus 324 ----~gs~iivTtR~~~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 367 (985)
...-+|.|+.+..+...+-. ...++++.+++.+|-.++.+++.
T Consensus 460 ~~dls~v~~i~TaN~~~i~~aLl~-R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 460 DYDLSDVMFVATSNSMNIPAPLLD-RMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred cccCCceEEEEcCCCCCCCHHHhc-ceeeeecCCCCHHHHHHHHHHhh
Confidence 23344555544333222211 23578899999999888877765
No 199
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.99 E-value=0.0028 Score=78.06 Aligned_cols=138 Identities=21% Similarity=0.271 Sum_probs=79.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++|-+..++.|.+.+.....+ ...+.....++.++|+.|+|||.||+.++.. .-+.....+-+++++-.
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~g--------l~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~ 636 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAG--------LEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQ 636 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcC--------CCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhh
Confidence 6899999999999988643200 0011344568999999999999999988762 21112222223322211
Q ss_pred CHHHHHHHHHHHhcCCCCCC---CCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC-----------C
Q 001993 259 DDIRIAKAILESLKGSATNA---VESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------K 324 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~ 324 (985)
+ ..-...+.+..... .....+...++ +...-+|+||++...+...++.+...+..+. .
T Consensus 637 ~-----~~~~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~ 708 (852)
T TIGR03345 637 E-----AHTVSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFK 708 (852)
T ss_pred h-----hhhhccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEecc
Confidence 1 01111222222211 11222333333 2456799999998777777777877776542 3
Q ss_pred CcEEEEEcCc
Q 001993 325 ESRILVTTRN 334 (985)
Q Consensus 325 gs~iivTtR~ 334 (985)
.+-||+||..
T Consensus 709 n~iiI~TSNl 718 (852)
T TIGR03345 709 NTVILLTSNA 718 (852)
T ss_pred ccEEEEeCCC
Confidence 4556777654
No 200
>PRK08118 topology modulation protein; Reviewed
Probab=96.99 E-value=0.0012 Score=64.61 Aligned_cols=34 Identities=32% Similarity=0.626 Sum_probs=26.6
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhh-ccCCceEE
Q 001993 218 IISITGMGGIGKTTLAKLIFNDNEVR-NHFNEKIW 251 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~w 251 (985)
.|.|+|++|+||||||+.+++..... -+|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999853332 45666665
No 201
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.98 E-value=0.0032 Score=67.86 Aligned_cols=102 Identities=18% Similarity=0.288 Sum_probs=62.4
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 294 (985)
..+-+.|+|..|+|||.||..+++. ....-..+.++++. .++..+....... ...+. +.. + .
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~~------~l~~~lk~~~~~~-----~~~~~---l~~-l-~ 216 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHFP------EFIRELKNSISDG-----SVKEK---IDA-V-K 216 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEHH------HHHHHHHHHHhcC-----cHHHH---HHH-h-c
Confidence 3467999999999999999999994 32222345666553 4555555443211 12222 222 2 3
Q ss_pred ceEEEEecCCCCCCcccHHH--HHhhh-cCC-CCCcEEEEEcCc
Q 001993 295 KKFFLVLDDVWTEEPQNWEQ--LLGCL-RCG-SKESRILVTTRN 334 (985)
Q Consensus 295 k~~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~iivTtR~ 334 (985)
+-=||||||+.-+....|.. +...+ ... ..+-.+|+||-.
T Consensus 217 ~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 217 EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 45689999997766667753 54443 322 245568888864
No 202
>PRK04296 thymidine kinase; Provisional
Probab=96.97 E-value=0.0021 Score=64.45 Aligned_cols=114 Identities=12% Similarity=0.035 Sum_probs=64.9
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCC--CCCHHHHHHHHHHHhcC
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATN--AVESETVLKQLRESIEG 294 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 294 (985)
.++.|+|..|.||||+|..++. +...+-..++.+. ..++.......++++++..... ....+++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~--~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY--NYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH--HHHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 4789999999999999999887 3433333444442 2222222234455555432111 1233445555544 334
Q ss_pred ceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchhh
Q 001993 295 KKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEKV 337 (985)
Q Consensus 295 k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v 337 (985)
+.-+||+|.+.-.+.++..++...+ ...|..||+|.++.+.
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 5569999999543222233333333 3457789999987553
No 203
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.97 E-value=0.0031 Score=71.58 Aligned_cols=187 Identities=17% Similarity=0.234 Sum_probs=114.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
++||-+.-...|...+..+. -..--...|+-|+||||+|+-++.. +. +. -| ....++
T Consensus 17 evvGQe~v~~~L~nal~~~r----------------i~hAYlfsG~RGvGKTt~Ari~Aka--lN--C~--~~-~~~ePC 73 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGR----------------IAHAYLFSGPRGVGKTTIARILAKA--LN--CE--NG-PTAEPC 73 (515)
T ss_pred HhcccHHHHHHHHHHHHhCc----------------chhhhhhcCCCCcCchhHHHHHHHH--hc--CC--CC-CCCCcc
Confidence 68999999999999998543 2334578999999999999988752 10 10 00 111122
Q ss_pred CHHHHHHHHHHHhcC-----CCCCCCCHHHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEE
Q 001993 259 DDIRIAKAILESLKG-----SATNAVESETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRI 328 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 328 (985)
..-..-+.|...-.. +.......++.. .+.+.. +++-=+.|+|+|+......|+.++..+.........
T Consensus 74 ~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR-~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~F 152 (515)
T COG2812 74 GKCISCKEINEGSLIDVIEIDAASNTGVDDIR-EIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKF 152 (515)
T ss_pred hhhhhhHhhhcCCcccchhhhhhhccChHHHH-HHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEE
Confidence 222222222222000 001111222222 222222 356668999999888888999999998876667776
Q ss_pred EEEcCchh-hHH-hhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChh
Q 001993 329 LVTTRNEK-VAI-AIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPL 396 (985)
Q Consensus 329 ivTtR~~~-v~~-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 396 (985)
|+.|.+.+ +.. ...- .+.|.++.++.++....+...+...... ...+....|++..+|..-
T Consensus 153 IlATTe~~Kip~TIlSR--cq~f~fkri~~~~I~~~L~~i~~~E~I~-----~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 153 ILATTEPQKIPNTILSR--CQRFDFKRLDLEEIAKHLAAILDKEGIN-----IEEDALSLIARAAEGSLR 215 (515)
T ss_pred EEecCCcCcCchhhhhc--cccccccCCCHHHHHHHHHHHHHhcCCc-----cCHHHHHHHHHHcCCChh
Confidence 76666544 322 2222 3789999999999999988877655432 223456677777777654
No 204
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.97 E-value=0.0054 Score=67.86 Aligned_cols=123 Identities=18% Similarity=0.205 Sum_probs=80.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhc--------------
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRN-------------- 244 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------- 244 (985)
+++|-+....++..+..... .....+.++|++|+||||+|..+++. .-.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~---------------~~~halL~~Gp~G~Gktt~a~~lA~~--l~~~~~~~~~~~~~~~~ 64 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG---------------RLPHALLFYGPPGVGKTTAALALAKE--LLCENPTGLLPCGHCRS 64 (325)
T ss_pred CcccchhHHHHHHHHHHhcC---------------CCCceeeeeCCCCCCHHHHHHHHHHH--HhCCCcccCCcccchhh
Confidence 46777778888888877332 22346999999999999999999873 221
Q ss_pred -------cCCceEEEEeCCCCC---HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHH
Q 001993 245 -------HFNEKIWVCVSEPFD---DIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQ 314 (985)
Q Consensus 245 -------~f~~~~wv~~s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~ 314 (985)
..+.+..+..+.... ..+..+.+.+....... .++.-++++|+++....+.-+.
T Consensus 65 ~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~na 128 (325)
T COG0470 65 CKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANA 128 (325)
T ss_pred hhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHH
Confidence 123445555444433 23333333333322111 3567899999997766666677
Q ss_pred HHhhhcCCCCCcEEEEEcCc
Q 001993 315 LLGCLRCGSKESRILVTTRN 334 (985)
Q Consensus 315 l~~~l~~~~~gs~iivTtR~ 334 (985)
++..+........+|++|..
T Consensus 129 llk~lEep~~~~~~il~~n~ 148 (325)
T COG0470 129 LLKTLEEPPKNTRFILITND 148 (325)
T ss_pred HHHHhccCCCCeEEEEEcCC
Confidence 88777777778888888874
No 205
>PRK09183 transposase/IS protein; Provisional
Probab=96.96 E-value=0.0036 Score=66.02 Aligned_cols=101 Identities=15% Similarity=0.107 Sum_probs=53.8
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
..+.|+|++|+|||+||..+.+.. ...-..+.+++ ..++...+...... .. +...+.+. ..+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a--~~~G~~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~-~~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEA--VRAGIKVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRG-VMAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHH--HHcCCeEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHH-hcCC
Confidence 467899999999999999997732 22222344443 22333333222111 01 11222222 2345
Q ss_pred EEEEecCCCCCCcccHH--HHHhhhcCC-CCCcEEEEEcCch
Q 001993 297 FFLVLDDVWTEEPQNWE--QLLGCLRCG-SKESRILVTTRNE 335 (985)
Q Consensus 297 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtR~~ 335 (985)
-++|+||+.-.....+. .+...+... ..++ +|+||...
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 69999999753333333 344444321 2344 88888753
No 206
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.018 Score=66.42 Aligned_cols=163 Identities=17% Similarity=0.271 Sum_probs=93.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+.+|.++-.++|++.|.-.. ..+.-.-+++++||++|||||+|++.++. -....|-. ++++.-.
T Consensus 324 dHYGLekVKeRIlEyLAV~~-----------l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR---~sLGGvr 387 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQK-----------LTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVR---ISLGGVR 387 (782)
T ss_pred cccCchhHHHHHHHHHHHHH-----------HhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEE---EecCccc
Confidence 68899999999999997432 01123457999999999999999999998 45555522 2333333
Q ss_pred CHHHHHHHHHHHhcCC--CCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCc----ccHHHHHhhhcCCCC--------
Q 001993 259 DDIRIAKAILESLKGS--ATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEP----QNWEQLLGCLRCGSK-------- 324 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~l~~~l~~~~~-------- 324 (985)
|..++ .+. ..-..-...+++.+++. +.+.-+++||.++.... +.-..++..|.+..+
T Consensus 388 DEAEI--------RGHRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYL 458 (782)
T COG0466 388 DEAEI--------RGHRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYL 458 (782)
T ss_pred cHHHh--------ccccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccc
Confidence 33222 111 11112233344444433 45778999999953221 112234443332111
Q ss_pred -----CcEEE-EEcCc-hh--hHHhhcCcccccccCCCCChHHHHHHHHHHhc
Q 001993 325 -----ESRIL-VTTRN-EK--VAIAIGTTKFNIIPIELLSDEDCWSIFSQLAL 368 (985)
Q Consensus 325 -----gs~ii-vTtR~-~~--v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 368 (985)
=|.|+ |||-+ -+ .+..++-. .++++.+.+++|=.+.-+++..
T Consensus 459 ev~yDLS~VmFiaTANsl~tIP~PLlDRM--EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 459 EVPYDLSKVMFIATANSLDTIPAPLLDRM--EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred cCccchhheEEEeecCccccCChHHhcce--eeeeecCCChHHHHHHHHHhcc
Confidence 13343 33332 22 22223322 7899999999998888777654
No 207
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.95 E-value=0.004 Score=69.90 Aligned_cols=153 Identities=18% Similarity=0.247 Sum_probs=84.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++||++.++.+...+..+. -|.|.|++|+|||++|+.+.........|... -+..+
T Consensus 21 ~i~gre~vI~lll~aalag~-------------------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~-~~~ft--- 77 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE-------------------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYL-MTRFS--- 77 (498)
T ss_pred hccCcHHHHHHHHHHHccCC-------------------CEEEECCCChhHHHHHHHHHHHhcccCcceee-eeeec---
Confidence 68999999999998887544 58999999999999999998732111223211 11111
Q ss_pred CHHHHHHHH-HHHhcCCCCCCCCHHHHHHHHHHHhcC---ceEEEEecCCCCCCcccHHHHHhhhcCCC--C-------C
Q 001993 259 DDIRIAKAI-LESLKGSATNAVESETVLKQLRESIEG---KKFFLVLDDVWTEEPQNWEQLLGCLRCGS--K-------E 325 (985)
Q Consensus 259 ~~~~~~~~i-~~~l~~~~~~~~~~~~~~~~l~~~l~~---k~~LlVlDdv~~~~~~~~~~l~~~l~~~~--~-------g 325 (985)
.+.+++..+ +..... . . .+.+...| .--++++|+++.........+...+.... . .
T Consensus 78 tp~DLfG~l~i~~~~~----~---g----~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp 146 (498)
T PRK13531 78 TPEEVFGPLSIQALKD----E---G----RYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIP 146 (498)
T ss_pred CcHHhcCcHHHhhhhh----c---C----chhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCC
Confidence 112221111 111100 0 0 01111111 11289999999887777777777774221 1 2
Q ss_pred cEEEEEcCchhhH------HhhcCcccccccCCCCChHHH-HHHHHHH
Q 001993 326 SRILVTTRNEKVA------IAIGTTKFNIIPIELLSDEDC-WSIFSQL 366 (985)
Q Consensus 326 s~iivTtR~~~v~------~~~~~~~~~~~~l~~L~~~e~-~~Lf~~~ 366 (985)
.++++++.++-.. ..+.-. ...+.+++++.++. .+++...
T Consensus 147 ~rfiv~ATN~LPE~g~~leAL~DRF-liri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 147 MRLLVTASNELPEADSSLEALYDRM-LIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CcEEEEECCCCcccCCchHHhHhhE-EEEEECCCCCchHHHHHHHHcc
Confidence 2565555543221 111111 14678899985444 7777653
No 208
>PRK04132 replication factor C small subunit; Provisional
Probab=96.95 E-value=0.014 Score=70.58 Aligned_cols=156 Identities=13% Similarity=0.063 Sum_probs=99.0
Q ss_pred cCCchHHHHHHHHhcchhhhccCC-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEec
Q 001993 224 MGGIGKTTLAKLIFNDNEVRNHFN-EKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLD 302 (985)
Q Consensus 224 ~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlD 302 (985)
+.++||||+|..++++. ....+. .++-+++++..... ..++++..+...... -..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEE
Confidence 77899999999999842 122232 36677777655544 333444333211100 01245799999
Q ss_pred CCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHH
Q 001993 303 DVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFE 381 (985)
Q Consensus 303 dv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~ 381 (985)
+++.......+.++..+.......++|++|.+.. +..... .....+.+.+++.++....+...+...+.. . ..
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIr-SRC~~i~F~~ls~~~i~~~L~~I~~~Egi~--i---~~ 711 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ-SRCAIFRFRPLRDEDIAKRLRYIAENEGLE--L---TE 711 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHh-hhceEEeCCCCCHHHHHHHHHHHHHhcCCC--C---CH
Confidence 9988877788888888886556667776665543 322221 123689999999999988887765432221 1 13
Q ss_pred HHHHHHHHhcCCChhHHHHH
Q 001993 382 NIGRQIVSKCKGLPLAVKTL 401 (985)
Q Consensus 382 ~~~~~i~~~c~GlPLai~~~ 401 (985)
+....|++.++|.+..+..+
T Consensus 712 e~L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 712 EGLQAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 46789999999988654433
No 209
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.94 E-value=0.00036 Score=83.28 Aligned_cols=131 Identities=21% Similarity=0.120 Sum_probs=88.8
Q ss_pred CCCceEEEccCcCCcchhhhHHHhhccCCcceeecCCCCCC----CCcccccCCCCCeEecCCCCCccccchhhcCCCCC
Q 001993 576 ETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGLPVGQ----IPKGIKKLIHLRYLALGENPWIKELPEALCELCNL 651 (985)
Q Consensus 576 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~----lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L 651 (985)
-.+|+.|++.|.... ...++...-..++.|+.|.+++... +-.-..++++|+.||+|+++ ++.+ ..|++|+||
T Consensus 121 r~nL~~LdI~G~~~~-s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELF-SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchh-hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccH
Confidence 357899999886432 2344455556788888888874322 23345678999999999999 9888 779999999
Q ss_pred cEeeccCcccccccc--hhhhhccccceeecccccccccccCCC----cCCCCCCCCccCceEec
Q 001993 652 QTLDVSLCHYLKRLP--ERIGQLINLRHLMNSKEEWSRLSYMPR----GMERLTGLRTLGAFVAS 710 (985)
Q Consensus 652 ~~L~l~~~~~l~~lP--~~i~~L~~L~~L~l~~n~~~~l~~~p~----~i~~L~~L~~L~~~~~~ 710 (985)
|+|.+++=. +..-+ .++.+|++|+.||+|.........+.. .-..|++|+.|++++..
T Consensus 198 q~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 198 QVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 999988644 33222 367889999999998532211111111 11237888888887544
No 210
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.92 E-value=0.012 Score=68.78 Aligned_cols=186 Identities=15% Similarity=0.189 Sum_probs=93.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|.+..++++.+++..-..+.... . .+...++-+.++|++|+|||++|+.+++. .... ++.++.
T Consensus 56 di~g~~~~k~~l~~~~~~l~~~~~~~----~-~g~~~~~giLL~GppGtGKT~la~alA~~--~~~~-----~~~i~~-- 121 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDFLKNPSKFT----K-LGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AGVP-----FFSISG-- 121 (495)
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHH----h-cCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCC-----eeeccH--
Confidence 67888877666655443111000000 0 00123455899999999999999999973 2222 232221
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC----------cccHHH----HHhhhc--CC
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE----------PQNWEQ----LLGCLR--CG 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~----l~~~l~--~~ 322 (985)
..+ .....+ .....+...+.......+.+|+|||++... ...+.. +...+. ..
T Consensus 122 --~~~----~~~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 122 --SDF----VEMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred --HHH----HHHHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 111 111111 112233333444445678999999994311 111222 222222 12
Q ss_pred CCCcEEEEEcCchh-hHHhhc-Cc-ccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001993 323 SKESRILVTTRNEK-VAIAIG-TT-KFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 323 ~~gs~iivTtR~~~-v~~~~~-~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 395 (985)
..+..||.||...+ +...+- .. -...+.+...+.++-.++|+.+...... ... .....+++.+.|.-
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~--~~~----~~l~~la~~t~G~s 260 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL--APD----VDLKAVARRTPGFS 260 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC--Ccc----hhHHHHHHhCCCCC
Confidence 23455666776543 222221 11 1146888888888888888877644321 111 11447777777743
No 211
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0085 Score=68.53 Aligned_cols=102 Identities=20% Similarity=0.327 Sum_probs=64.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+-+|.++-+++|++++.-+. -.++-+-++++.+|++|||||++|+.++. .....|- -++++.-.
T Consensus 412 DHYgm~dVKeRILEfiAV~k-----------Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFf---RfSvGG~t 475 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGK-----------LRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFF---RFSVGGMT 475 (906)
T ss_pred cccchHHHHHHHHHHHHHHh-----------hcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceE---EEeccccc
Confidence 68899999999999987543 11245678999999999999999999997 3444442 13444444
Q ss_pred CHHHHHHHHHHHhcCC--CCCCCCHHHHHHHHHHHhcCceEEEEecCCC
Q 001993 259 DDIRIAKAILESLKGS--ATNAVESETVLKQLRESIEGKKFFLVLDDVW 305 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 305 (985)
|..++ .+. ..-..-...+++.++.. +-.+-|+.+|.|+
T Consensus 476 DvAeI--------kGHRRTYVGAMPGkiIq~LK~v-~t~NPliLiDEvD 515 (906)
T KOG2004|consen 476 DVAEI--------KGHRRTYVGAMPGKIIQCLKKV-KTENPLILIDEVD 515 (906)
T ss_pred cHHhh--------cccceeeeccCChHHHHHHHhh-CCCCceEEeehhh
Confidence 43332 121 11122233444444433 3456688899984
No 212
>PHA00729 NTP-binding motif containing protein
Probab=96.81 E-value=0.0051 Score=62.14 Aligned_cols=25 Identities=32% Similarity=0.231 Sum_probs=22.1
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+...|.|+|.+|+||||||..+.+
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999987
No 213
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.81 E-value=0.0048 Score=63.22 Aligned_cols=49 Identities=20% Similarity=0.320 Sum_probs=37.1
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAK 265 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 265 (985)
+.-.++.|+|.+|+|||++|.+++.. ....-..++|++... ++...+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 45689999999999999999998873 333446789999876 66555443
No 214
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.79 E-value=0.067 Score=59.06 Aligned_cols=42 Identities=17% Similarity=0.397 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcc
Q 001993 184 NHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 184 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
+.-.+.|.+.+.... .....+|+|.|.=|+||||+.+.+.+.
T Consensus 2 ~~~a~~la~~I~~~~--------------~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD--------------SDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccC--------------CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344566777776443 357789999999999999999999873
No 215
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.016 Score=63.92 Aligned_cols=151 Identities=19% Similarity=0.228 Sum_probs=87.2
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
.....|.+.|++|+|||+||..++. ...|+.+=-++..+-. +. .+......+...+.+.-+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~mi-------------G~--sEsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMI-------------GL--SESAKCAHIKKIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHcc-------------Cc--cHHHHHHHHHHHHHHhhc
Confidence 4667889999999999999999986 4567765434321100 00 111112223333444446
Q ss_pred CceEEEEecCCCCCCcccH------------HHHHhhh---cCCCCCcEEEEEcCchhhHHhhcCcc--cccccCCCCCh
Q 001993 294 GKKFFLVLDDVWTEEPQNW------------EQLLGCL---RCGSKESRILVTTRNEKVAIAIGTTK--FNIIPIELLSD 356 (985)
Q Consensus 294 ~k~~LlVlDdv~~~~~~~~------------~~l~~~l---~~~~~gs~iivTtR~~~v~~~~~~~~--~~~~~l~~L~~ 356 (985)
..--.||+||+.. .-+| ..+...+ |+.++.--|+-||-...+...|+... ...|++..++.
T Consensus 597 S~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 597 SPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred CcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 6778999999943 1122 2222233 23333445666777788888776532 14688888887
Q ss_pred -HHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhc
Q 001993 357 -EDCWSIFSQLALSRRLDIEESENFENIGRQIVSKC 391 (985)
Q Consensus 357 -~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c 391 (985)
++..+.++..-. -.+.....++++...+|
T Consensus 675 ~~~~~~vl~~~n~------fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 675 GEQLLEVLEELNI------FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred hHHHHHHHHHccC------CCcchhHHHHHHHhccc
Confidence 777777765321 11233444566666655
No 216
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.74 E-value=0.0062 Score=63.23 Aligned_cols=47 Identities=23% Similarity=0.298 Sum_probs=35.5
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRI 263 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~ 263 (985)
+.-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 45579999999999999999999873 33334678899887 5555443
No 217
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.73 E-value=0.0045 Score=72.39 Aligned_cols=172 Identities=22% Similarity=0.279 Sum_probs=88.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhh--hccCC-ceEEEEeC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEV--RNHFN-EKIWVCVS 255 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~f~-~~~wv~~s 255 (985)
+++|.+..++.+...+.. +...-|.|+|.+|+|||++|+.+++.... ...|. ..-|+.+.
T Consensus 66 ~iiGqs~~i~~l~~al~~-----------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id 128 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCG-----------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEID 128 (531)
T ss_pred HeeCcHHHHHHHHHHHhC-----------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEc
Confidence 689999999999887652 23345689999999999999999763211 12232 12334332
Q ss_pred C---CCCHHHHHHHHHHHhcCCCCCCC-CH---HHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCC------
Q 001993 256 E---PFDDIRIAKAILESLKGSATNAV-ES---ETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCG------ 322 (985)
Q Consensus 256 ~---~~~~~~~~~~i~~~l~~~~~~~~-~~---~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------ 322 (985)
- .++.+.+...++........... .. .....+....-+...=.|+||++........+.+...+...
T Consensus 129 ~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~ 208 (531)
T TIGR02902 129 ATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDS 208 (531)
T ss_pred cccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeecc
Confidence 1 22222222222111100000000 00 00000000000224468999999887777777777655321
Q ss_pred ----------------------CCCcEEEEE-cCchh-hHHhhcCcccccccCCCCChHHHHHHHHHHhc
Q 001993 323 ----------------------SKESRILVT-TRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQLAL 368 (985)
Q Consensus 323 ----------------------~~gs~iivT-tR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 368 (985)
....++|.+ |++.. +..... .....+.+.+++.+|..+++++.+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLr-sR~~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 209 AYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALR-SRCVEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred ccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHh-hhhheeeCCCCCHHHHHHHHHHHHH
Confidence 012356654 44432 111111 1124677889998888888877653
No 218
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.72 E-value=0.00039 Score=69.74 Aligned_cols=121 Identities=18% Similarity=0.065 Sum_probs=62.1
Q ss_pred CCCCCCCCeEEEeeccCCCCCCCChhh--------hccccccEEeEeccCCCCc----CC-CCCCCCccceeeccCCCCc
Q 001993 785 LQPPSSLEKLGIYGYAGDTISPTSDWM--------LSLAKLRVLTLRFCNECEC----LP-PLGKLPCLETLVLEGMSSV 851 (985)
Q Consensus 785 l~~~~~L~~L~l~~~~~~~~~~~p~~~--------~~l~~L~~L~L~~~~~~~~----l~-~l~~l~~L~~L~L~~~~~l 851 (985)
+..+.+|+.+++..|.+. |..+ ..+.+|+.|+|.+|..... +. .+...+.|+.|.+..|- +
T Consensus 181 l~sh~~lk~vki~qNgIr-----pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl-l 254 (388)
T COG5238 181 LESHENLKEVKIQQNGIR-----PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL-L 254 (388)
T ss_pred HHhhcCceeEEeeecCcC-----cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh-h
Confidence 344567777777766543 3322 1456777777777743211 10 23344567888888775 2
Q ss_pred eEeCC-cccCCchhhhhhhhhhhcccccccCCCCCccceeecccccccccccc--ccccCcccccccccceeecccccCC
Q 001993 852 KRLGN-GFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDMEKWEEWDD--CEIAGGKTIMPRLRHLSICWSPELK 928 (985)
Q Consensus 852 ~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~~~~--~~~~~~~~~lp~L~~L~i~~c~~L~ 928 (985)
..-+. .++.. .....+|+|..|.+.+...-..... .-.......+|-|..|.++++ .++
T Consensus 255 s~~G~~~v~~~-----------------f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN-r~~ 316 (388)
T COG5238 255 SNEGVKSVLRR-----------------FNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN-RIK 316 (388)
T ss_pred ccccHHHHHHH-----------------hhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC-cch
Confidence 21111 11100 0123578888887776432111110 001123357899999988876 344
Q ss_pred C
Q 001993 929 A 929 (985)
Q Consensus 929 ~ 929 (985)
.
T Consensus 317 E 317 (388)
T COG5238 317 E 317 (388)
T ss_pred h
Confidence 3
No 219
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.71 E-value=0.0075 Score=74.81 Aligned_cols=140 Identities=22% Similarity=0.274 Sum_probs=78.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++|-+..++.|.+.+....-+ ...++.....+.++|+.|+|||+||+.++. ..-+.-...+-+..++-.
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~g--------l~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~ 579 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARVG--------LKNPNRPIASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYM 579 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhhc--------ccCCCCCceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhcc
Confidence 6889999999998888643200 001123345678999999999999999986 221111233444444322
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce-EEEEecCCCCCCcccHHHHHhhhcCCC-----------CCc
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK-FFLVLDDVWTEEPQNWEQLLGCLRCGS-----------KES 326 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs 326 (985)
+...+ .. +.+.+......++ ...+.+.++.++ .+++||++.....+.++.+...+..+. ..+
T Consensus 580 ~~~~~----~~-l~g~~~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~ 653 (821)
T CHL00095 580 EKHTV----SK-LIGSPPGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNT 653 (821)
T ss_pred ccccH----HH-hcCCCCcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCce
Confidence 21111 11 1122111111111 112334444444 589999998877778888888776531 344
Q ss_pred EEEEEcCc
Q 001993 327 RILVTTRN 334 (985)
Q Consensus 327 ~iivTtR~ 334 (985)
-||+||..
T Consensus 654 i~I~Tsn~ 661 (821)
T CHL00095 654 LIIMTSNL 661 (821)
T ss_pred EEEEeCCc
Confidence 56777664
No 220
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.70 E-value=0.0019 Score=67.76 Aligned_cols=82 Identities=21% Similarity=0.239 Sum_probs=49.9
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 294 (985)
+..-+.++|.+|+|||.||.++.+. ....=..+.++++ .++..++...... . .....+.+.+ .
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~------~el~~~Lk~~~~~----~----~~~~~l~~~l-~ 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITA------PDLLSKLKAAFDE----G----RLEEKLLREL-K 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhc----C----chHHHHHHHh-h
Confidence 4457899999999999999999994 4332234666654 3455555544432 1 1112222222 2
Q ss_pred ceEEEEecCCCCCCcccHH
Q 001993 295 KKFFLVLDDVWTEEPQNWE 313 (985)
Q Consensus 295 k~~LlVlDdv~~~~~~~~~ 313 (985)
+-=||||||+.-.....|.
T Consensus 167 ~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred cCCEEEEecccCccCCHHH
Confidence 3348999999765555554
No 221
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.69 E-value=0.12 Score=56.84 Aligned_cols=215 Identities=14% Similarity=0.152 Sum_probs=126.8
Q ss_pred chhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHH-HHHhcchhhhccCCceEEEEeCC---CC
Q 001993 183 RNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLA-KLIFNDNEVRNHFNEKIWVCVSE---PF 258 (985)
Q Consensus 183 r~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~~wv~~s~---~~ 258 (985)
|.+..++|..||.... -.+|.|.|+-|+||+.|+ .++..+. +.++.+.+.+ ..
T Consensus 1 R~e~~~~L~~wL~e~~-----------------~TFIvV~GPrGSGK~elV~d~~L~~r------~~vL~IDC~~i~~ar 57 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP-----------------NTFIVVQGPRGSGKRELVMDHVLKDR------KNVLVIDCDQIVKAR 57 (431)
T ss_pred CchHHHHHHHHHhcCC-----------------CeEEEEECCCCCCccHHHHHHHHhCC------CCEEEEEChHhhhcc
Confidence 5677899999998433 369999999999999999 7776642 2255555432 12
Q ss_pred CHHHHHHHHHHHhcC-----------------------CCCC--CCCHHHHHHH-------HHH----------------
Q 001993 259 DDIRIAKAILESLKG-----------------------SATN--AVESETVLKQ-------LRE---------------- 290 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~-----------------------~~~~--~~~~~~~~~~-------l~~---------------- 290 (985)
+...++..++.+++- .... +....++... |++
T Consensus 58 ~D~~~I~~lA~qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~ 137 (431)
T PF10443_consen 58 GDAAFIKNLASQVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLK 137 (431)
T ss_pred ChHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccC
Confidence 333444444444432 1111 1111222111 111
Q ss_pred ---Hhc---CceEEEEecCCCCCCc---ccHHHHHhh--hcCCCCCcEEEEEcCchhhHH----hhcCcccccccCCCCC
Q 001993 291 ---SIE---GKKFFLVLDDVWTEEP---QNWEQLLGC--LRCGSKESRILVTTRNEKVAI----AIGTTKFNIIPIELLS 355 (985)
Q Consensus 291 ---~l~---~k~~LlVlDdv~~~~~---~~~~~l~~~--l~~~~~gs~iivTtR~~~v~~----~~~~~~~~~~~l~~L~ 355 (985)
+|+ .++-+||+||.-.... .-|+.+..- .....+-.+||+.|-+..... .+....+..+.|...+
T Consensus 138 e~~yl~~hPe~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das 217 (431)
T PF10443_consen 138 EEDYLEAHPERRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDAS 217 (431)
T ss_pred chhhhhhCCccCCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCC
Confidence 111 2367999999854221 122222211 011235568999998865544 3333445788999999
Q ss_pred hHHHHHHHHHHhcCCCCCc-----------cc----chhHHHHHHHHHHhcCCChhHHHHHHhhhhcCCCh-HHHHHHHH
Q 001993 356 DEDCWSIFSQLALSRRLDI-----------EE----SENFENIGRQIVSKCKGLPLAVKTLGSLLRFKGKI-EEWQRVLE 419 (985)
Q Consensus 356 ~~e~~~Lf~~~~~~~~~~~-----------~~----~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~-~~w~~~~~ 419 (985)
.+.|..+..++........ .. ......-....++.+||=-.-+..+++.++...++ +.-.++.+
T Consensus 218 ~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 218 PESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred HHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999988875431100 00 01233445677889999999999999999887665 34444554
Q ss_pred h
Q 001993 420 N 420 (985)
Q Consensus 420 ~ 420 (985)
.
T Consensus 298 q 298 (431)
T PF10443_consen 298 Q 298 (431)
T ss_pred H
Confidence 4
No 222
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.69 E-value=0.0072 Score=59.97 Aligned_cols=38 Identities=32% Similarity=0.586 Sum_probs=30.2
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEE
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVC 253 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 253 (985)
....+|.|+|+.|+||||+|+.++. +....+..++++.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 4557999999999999999999998 5555566666653
No 223
>PRK07261 topology modulation protein; Provisional
Probab=96.66 E-value=0.0042 Score=61.13 Aligned_cols=65 Identities=17% Similarity=0.287 Sum_probs=39.6
Q ss_pred EEEEEccCCchHHHHHHHHhcchhh-hccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001993 218 IISITGMGGIGKTTLAKLIFNDNEV-RNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
.|.|+|++|+||||||+.+...... .-+.+...|-.. ....+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN---------------------WQERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc---------------------cccCCHHHHHHHHHHHHhCCC
Confidence 4899999999999999998763111 112333334211 112234455666666676666
Q ss_pred EEEEecCCC
Q 001993 297 FFLVLDDVW 305 (985)
Q Consensus 297 ~LlVlDdv~ 305 (985)
.|+|+..
T Consensus 61 --wIidg~~ 67 (171)
T PRK07261 61 --WIIDGNY 67 (171)
T ss_pred --EEEcCcc
Confidence 6778874
No 224
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.66 E-value=0.0038 Score=67.81 Aligned_cols=102 Identities=21% Similarity=0.277 Sum_probs=56.8
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
.-+.++|..|+|||+||..+++. ....-..++++++.+ ++..+...-. . ...+.... .+.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~~------l~~~l~~~~~-~--~~~~~~~~----~~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTADE------LIEILREIRF-N--NDKELEEV----YDLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHHH------HHHHHHHHHh-c--cchhHHHH----HHHhc-cC
Confidence 56999999999999999999984 333333566776433 3333322111 1 01111111 12222 22
Q ss_pred EEEEecCCCCCCcccHH--HHHhhhcCC-CCCcEEEEEcCc
Q 001993 297 FFLVLDDVWTEEPQNWE--QLLGCLRCG-SKESRILVTTRN 334 (985)
Q Consensus 297 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtR~ 334 (985)
=||||||+.......|. .+...+... ..+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 48999999665444443 344444322 234568888874
No 225
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.65 E-value=0.0056 Score=61.18 Aligned_cols=132 Identities=18% Similarity=0.224 Sum_probs=64.5
Q ss_pred cchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC--CC
Q 001993 182 GRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP--FD 259 (985)
Q Consensus 182 Gr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~ 259 (985)
.+..+....++.|... .+|.+.|++|.|||.||...+-+.-..+.|+.++++.-.-. .+
T Consensus 4 p~~~~Q~~~~~al~~~-------------------~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~ 64 (205)
T PF02562_consen 4 PKNEEQKFALDALLNN-------------------DLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGED 64 (205)
T ss_dssp --SHHHHHHHHHHHH--------------------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT--
T ss_pred CCCHHHHHHHHHHHhC-------------------CeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccc
Confidence 4566677777877722 49999999999999999998876555688888877742111 00
Q ss_pred H----HH-------HHHHHHHHhcCCCCCCCCHHHHHHH------HHHHhcCc---eEEEEecCCCCCCcccHHHHHhhh
Q 001993 260 D----IR-------IAKAILESLKGSATNAVESETVLKQ------LRESIEGK---KFFLVLDDVWTEEPQNWEQLLGCL 319 (985)
Q Consensus 260 ~----~~-------~~~~i~~~l~~~~~~~~~~~~~~~~------l~~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l 319 (985)
. -+ ....+...+..- ......+.+... -..+++|+ ..++|+|++.+....++.. .+
T Consensus 65 lGflpG~~~eK~~p~~~p~~d~l~~~-~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~---il 140 (205)
T PF02562_consen 65 LGFLPGDLEEKMEPYLRPIYDALEEL-FGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKM---IL 140 (205)
T ss_dssp --SS---------TTTHHHHHHHTTT-S-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHH---HH
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHH-hChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHH---HH
Confidence 0 00 011111111110 011122222111 00233453 4699999996655444444 45
Q ss_pred cCCCCCcEEEEEcCchh
Q 001993 320 RCGSKESRILVTTRNEK 336 (985)
Q Consensus 320 ~~~~~gs~iivTtR~~~ 336 (985)
...+.|||||++--..+
T Consensus 141 TR~g~~skii~~GD~~Q 157 (205)
T PF02562_consen 141 TRIGEGSKIIITGDPSQ 157 (205)
T ss_dssp TTB-TT-EEEEEE----
T ss_pred cccCCCcEEEEecCcee
Confidence 55678999999865443
No 226
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.63 E-value=0.017 Score=70.95 Aligned_cols=188 Identities=18% Similarity=0.159 Sum_probs=93.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
++.|.+..+++|.+++...-. .+..... . +-...+-+.|+|++|+|||+||+.+++ .....| +.++.+.
T Consensus 179 di~G~~~~~~~l~~~i~~~~~-~~~~~~~-~--gi~~~~giLL~GppGtGKT~laraia~--~~~~~~---i~i~~~~-- 247 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMK-HPELFEH-L--GIEPPKGVLLYGPPGTGKTLLAKAVAN--EAGAYF---ISINGPE-- 247 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhh-CHHHHHh-c--CCCCCceEEEECCCCCChHHHHHHHHH--HhCCeE---EEEecHH--
Confidence 588999999999887753210 0000000 0 012345688999999999999999988 332222 2222111
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC-----------cccHHHHHhhhcCC-CCCc
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE-----------PQNWEQLLGCLRCG-SKES 326 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~~~-~~gs 326 (985)
+.... .......+...+.......+.+|+||++.... ......+...+... ..+.
T Consensus 248 --------i~~~~-----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~ 314 (733)
T TIGR01243 248 --------IMSKY-----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGR 314 (733)
T ss_pred --------Hhccc-----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCC
Confidence 11100 01112223333334445667899999984311 01122344433321 2233
Q ss_pred EEEE-EcCchh-hHHhhcC-c-ccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChh
Q 001993 327 RILV-TTRNEK-VAIAIGT-T-KFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPL 396 (985)
Q Consensus 327 ~iiv-TtR~~~-v~~~~~~-~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 396 (985)
.++| ||.... +...+.. . -...+.+...+.++-.++++........ ... .....+++.+.|.--
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l--~~d----~~l~~la~~t~G~~g 382 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL--AED----VDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC--ccc----cCHHHHHHhCCCCCH
Confidence 3444 444332 2222211 0 0135677777888888888755432211 111 124667778887653
No 227
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.62 E-value=0.023 Score=69.92 Aligned_cols=187 Identities=17% Similarity=0.211 Sum_probs=95.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
++.|.+..+++|.+.+.-.-... ..... .+-..++-+.++|++|.|||++|+.+++. ....| +.+...
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~-~~~~~---~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~- 521 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHP-EIFEK---MGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP- 521 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCH-HHHHh---cCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH-
Confidence 57888888887777664211000 00000 00123456899999999999999999983 33222 222210
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCC--------Cc----ccHHHHHhhhcC--CCC
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTE--------EP----QNWEQLLGCLRC--GSK 324 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~~----~~~~~l~~~l~~--~~~ 324 (985)
.++... .......+...+...-+..+.+|++|+++.. .. .....+...+.. ...
T Consensus 522 -------~l~~~~-----vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~ 589 (733)
T TIGR01243 522 -------EILSKW-----VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS 589 (733)
T ss_pred -------HHhhcc-----cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence 111111 1111222333333333567899999998431 00 112223333332 223
Q ss_pred CcEEEEEcCchhhH-Hhhc-Ccc-cccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001993 325 ESRILVTTRNEKVA-IAIG-TTK-FNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 325 gs~iivTtR~~~v~-~~~~-~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 395 (985)
+.-||.||...+.. ..+- ... ...+.+...+.++-.++|+.+...... ....+ ...+++.+.|.-
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~--~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL--AEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC--CccCC----HHHHHHHcCCCC
Confidence 44566677655432 2221 111 146778888888888888765533221 11112 455667777654
No 228
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.59 E-value=0.012 Score=61.21 Aligned_cols=89 Identities=19% Similarity=0.200 Sum_probs=54.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccC------CceEEEEeCCCCCHHHHHHHHHHHhcCCC---------CCC
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHF------NEKIWVCVSEPFDDIRIAKAILESLKGSA---------TNA 278 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f------~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---------~~~ 278 (985)
+.-.++.|+|.+|+|||+||.+++... ...- ..++|+.....++...+. .+.+...... ...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 455799999999999999999987632 2222 457899887777765443 3333322110 111
Q ss_pred CCHHHHHHHHHHHhc----CceEEEEecCCC
Q 001993 279 VESETVLKQLRESIE----GKKFFLVLDDVW 305 (985)
Q Consensus 279 ~~~~~~~~~l~~~l~----~k~~LlVlDdv~ 305 (985)
.+.+++...+.+..+ .+.-|+|+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 334455544444432 345588888873
No 229
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.58 E-value=0.029 Score=58.78 Aligned_cols=171 Identities=20% Similarity=0.184 Sum_probs=97.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCC-ceEEEEeCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFN-EKIWVCVSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~ 257 (985)
.++|-.++..++-.++.... . .+....|.|+|+.|.|||+|......+ ...|. ..+-|.....
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~----------~---~gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~ 88 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTI----------L---HGESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGE 88 (408)
T ss_pred ceeehHHHHHHHHHHHHHHH----------H---hcCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECcc
Confidence 68999999999999887543 1 234457899999999999999887775 22333 2344555444
Q ss_pred CCH-HHHHHHHHHHhcC----CCCCCCCHHHHHHHHHHHhc------CceEEEEecCCCCCCcccHHHH-Hhhhc----C
Q 001993 258 FDD-IRIAKAILESLKG----SATNAVESETVLKQLRESIE------GKKFFLVLDDVWTEEPQNWEQL-LGCLR----C 321 (985)
Q Consensus 258 ~~~-~~~~~~i~~~l~~----~~~~~~~~~~~~~~l~~~l~------~k~~LlVlDdv~~~~~~~~~~l-~~~l~----~ 321 (985)
... .-.++.|.+++.. .........+....+-+.|+ +-++++|+|.++-.....-..+ ...+. .
T Consensus 89 ~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~ 168 (408)
T KOG2228|consen 89 LQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSA 168 (408)
T ss_pred chhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhc
Confidence 332 2345555555532 21111122222333444442 3468999998854332211111 12222 2
Q ss_pred CCCCcEEEEEcCchh-------hHHhhcCcccccccCCCCChHHHHHHHHHHh
Q 001993 322 GSKESRILVTTRNEK-------VAIAIGTTKFNIIPIELLSDEDCWSIFSQLA 367 (985)
Q Consensus 322 ~~~gs~iivTtR~~~-------v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 367 (985)
..+-+-|-+|||-.. |-..+... .++-+++++-++...++++..
T Consensus 169 r~Piciig~Ttrld~lE~LEKRVKSRFshr--~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 169 RAPICIIGVTTRLDILELLEKRVKSRFSHR--VIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred CCCeEEEEeeccccHHHHHHHHHHhhcccc--eeeccCCCChHHHHHHHHHHh
Confidence 345566788998643 22233333 355667778888888888765
No 230
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.56 E-value=0.012 Score=61.60 Aligned_cols=56 Identities=21% Similarity=0.252 Sum_probs=38.9
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhcc----CCceEEEEeCCCCCHHHHHHHHHHH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNH----FNEKIWVCVSEPFDDIRIAKAILES 270 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~ 270 (985)
+.-.++.|+|.+|+|||++|.+++........ -..++|++....++...+ .++++.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~ 76 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAER 76 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHH
Confidence 34579999999999999999999753222221 357899998887765444 333443
No 231
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.00098 Score=67.87 Aligned_cols=85 Identities=13% Similarity=0.173 Sum_probs=46.4
Q ss_pred CCCccceeeccccccccccccccccCcccccccccceeecccccCCCCC--CCCCCCCCcCeEEecCchhhhhhhcCCCC
Q 001993 883 AFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALP--DYILGSTSLDKLLIYYSRHLNNRYNMETG 960 (985)
Q Consensus 883 ~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp--~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 960 (985)
-||++..+.+..|| ++....++ +...+|.+-.|++... ++.+.. ..+..+++|.-|.+.+.|..... + ...
T Consensus 197 ~Fpnv~sv~v~e~P-lK~~s~ek---~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l-~-~~e 269 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGP-LKTESSEK---GSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPL-R-GGE 269 (418)
T ss_pred hcccchheeeecCc-ccchhhcc---cCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCcccccc-c-CCc
Confidence 47777777766654 23332222 3345666666666543 344322 23456777777888887754332 1 122
Q ss_pred CCCCCcCCcCceee
Q 001993 961 PEWPKISHVPNISF 974 (985)
Q Consensus 961 ~~~~~i~h~p~~~~ 974 (985)
.-...|+.+|+|++
T Consensus 270 rr~llIaRL~~v~v 283 (418)
T KOG2982|consen 270 RRFLLIARLTKVQV 283 (418)
T ss_pred ceEEEEeeccceEE
Confidence 33445677777776
No 232
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.56 E-value=0.00013 Score=82.62 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=17.2
Q ss_pred CcccccCCCCCeEecCCCCCccc
Q 001993 618 PKGIKKLIHLRYLALGENPWIKE 640 (985)
Q Consensus 618 p~~i~~l~~Lr~L~L~~~~~i~~ 640 (985)
|-.|..+..||.|.|++|. +..
T Consensus 102 pi~ifpF~sLr~LElrg~~-L~~ 123 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCD-LST 123 (1096)
T ss_pred CceeccccceeeEEecCcc-hhh
Confidence 5567888889999998887 544
No 233
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.52 E-value=0.00081 Score=63.84 Aligned_cols=89 Identities=25% Similarity=0.309 Sum_probs=49.3
Q ss_pred EEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEE
Q 001993 219 ISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFF 298 (985)
Q Consensus 219 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~L 298 (985)
|.|+|++|+|||+||+.++. .... ...-+.++...+..++....--. .+. .......+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~~---~~~~i~~~~~~~~~dl~g~~~~~-~~~--~~~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLGR---PVIRINCSSDTTEEDLIGSYDPS-NGQ--FEFKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHTC---EEEEEE-TTTSTHHHHHCEEET--TTT--TCEEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhhc---ceEEEEeccccccccceeeeeec-ccc--cccccccccccc-----cceeE
Confidence 68999999999999999997 3311 23345677777766654322211 000 000001111001 17899
Q ss_pred EEecCCCCCCcccHHHHHhhhc
Q 001993 299 LVLDDVWTEEPQNWEQLLGCLR 320 (985)
Q Consensus 299 lVlDdv~~~~~~~~~~l~~~l~ 320 (985)
+|||++.......+..+...+.
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHh
Confidence 9999997655555555555554
No 234
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.50 E-value=0.011 Score=61.12 Aligned_cols=44 Identities=18% Similarity=0.223 Sum_probs=32.6
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCC
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFD 259 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 259 (985)
+.-.++.|+|.+|+||||+|.+++.. ....-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 45689999999999999999999873 322334577887655543
No 235
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.49 E-value=0.012 Score=71.22 Aligned_cols=125 Identities=16% Similarity=0.202 Sum_probs=70.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++|-+..++.|.+.+.....+ ...+......+.++|++|+|||++|+.++.. .. ...+.++.++-.
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~g--------l~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~---~~~i~id~se~~ 525 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAG--------LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYM 525 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcc--------ccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hC---CCcEEeechhhc
Confidence 5889999999998888743200 0001233467899999999999999999873 32 123344444322
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc-CceEEEEecCCCCCCcccHHHHHhhhcCC
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIE-GKKFFLVLDDVWTEEPQNWEQLLGCLRCG 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~~~ 322 (985)
... . ...+.+.+......+ ....+.+.++ ....+|+||++.....+.++.+...+..+
T Consensus 526 ~~~----~-~~~LiG~~~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G 584 (758)
T PRK11034 526 ERH----T-VSRLIGAPPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNG 584 (758)
T ss_pred ccc----c-HHHHcCCCCCccccc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcC
Confidence 111 1 122223221111100 0112223333 34469999999877777778887777543
No 236
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.45 E-value=0.013 Score=57.10 Aligned_cols=40 Identities=28% Similarity=0.389 Sum_probs=29.6
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCC
Q 001993 218 IISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFD 259 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 259 (985)
++.|+|.+|+||||++..++.. ....-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 3689999999999999999873 333334577887765543
No 237
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.45 E-value=0.0043 Score=58.72 Aligned_cols=108 Identities=19% Similarity=0.241 Sum_probs=63.1
Q ss_pred ecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhh-hccCCceEEEEeCCCCC
Q 001993 181 RGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEV-RNHFNEKIWVCVSEPFD 259 (985)
Q Consensus 181 vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~s~~~~ 259 (985)
||+-..++++.+.+..-. ....-|.|+|..|+||+++|+.++..... ...|..+ .+..
T Consensus 1 vG~S~~~~~l~~~l~~~a---------------~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~--- 59 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA---------------KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCAS--- 59 (138)
T ss_dssp --SCHHHHHHHHHHHHHH---------------CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHC---
T ss_pred CCCCHHHHHHHHHHHHHh---------------CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhh---
Confidence 466677777777766432 22346799999999999999988874221 1122110 0001
Q ss_pred HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcC-CCCCcEEEEEcCch
Q 001993 260 DIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRC-GSKESRILVTTRNE 335 (985)
Q Consensus 260 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTtR~~ 335 (985)
.. .+.+.+ .+.--|+|+|+..-.......+...+.. .....|+|.||...
T Consensus 60 -------------------~~----~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 60 -------------------LP----AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp -------------------TC----HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred -------------------Cc----HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 00 111111 2445678999977776677777777763 35677999998854
No 238
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.43 E-value=0.0097 Score=68.32 Aligned_cols=90 Identities=18% Similarity=0.262 Sum_probs=62.6
Q ss_pred CCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 001993 213 TQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI 292 (985)
Q Consensus 213 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 292 (985)
.+.-+++.++|++|+||||||.-++.+. - ..++-|++|+..+...+-..|...+........
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa----G-YsVvEINASDeRt~~~v~~kI~~avq~~s~l~a------------- 384 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA----G-YSVVEINASDERTAPMVKEKIENAVQNHSVLDA------------- 384 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc----C-ceEEEecccccccHHHHHHHHHHHHhhcccccc-------------
Confidence 3566899999999999999999998732 1 246778888888877777777666544322111
Q ss_pred cCceEEEEecCCCCCCcccHHHHHhhhc
Q 001993 293 EGKKFFLVLDDVWTEEPQNWEQLLGCLR 320 (985)
Q Consensus 293 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~ 320 (985)
.+++.-||+|.++.......+.++..+.
T Consensus 385 dsrP~CLViDEIDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAPRAAVDVILSLVK 412 (877)
T ss_pred CCCcceEEEecccCCcHHHHHHHHHHHH
Confidence 2678899999997655334455554443
No 239
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.40 E-value=0.00015 Score=82.05 Aligned_cols=84 Identities=26% Similarity=0.329 Sum_probs=58.4
Q ss_pred cccccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchh-hhhccccceeecccccccccccCCCcCCC
Q 001993 619 KGIKKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPER-IGQLINLRHLMNSKEEWSRLSYMPRGMER 697 (985)
Q Consensus 619 ~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~n~~~~l~~~p~~i~~ 697 (985)
.++.-+++|+.|+|++|+ +...- .+..|++|++|||++|. +..+|.- ...+ +|+.|.+++|....+ .+|.+
T Consensus 181 ~SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN~l~tL----~gie~ 252 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNNALTTL----RGIEN 252 (1096)
T ss_pred HHHHHHHHhhhhccchhh-hhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeecccHHHhh----hhHHh
Confidence 455667788888888887 66654 57778888888888887 7777752 2222 388888886655322 46778
Q ss_pred CCCCCccCceEec
Q 001993 698 LTGLRTLGAFVAS 710 (985)
Q Consensus 698 L~~L~~L~~~~~~ 710 (985)
|++|+.|++..+-
T Consensus 253 LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNL 265 (1096)
T ss_pred hhhhhccchhHhh
Confidence 8888888876543
No 240
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.023 Score=60.08 Aligned_cols=196 Identities=15% Similarity=0.208 Sum_probs=101.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
++-|-++.+++|.+.+.-+-. .+.... ..+-..++=|.++|++|.|||-||++|++ +....| +.+..
T Consensus 152 dIGGL~~Qi~EirE~VELPL~--~PElF~--~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----Irvvg-- 218 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLK--NPELFE--ELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVG-- 218 (406)
T ss_pred hccCHHHHHHHHHHHhccccc--CHHHHH--HcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEecc--
Confidence 567899999999887642210 000000 00124567899999999999999999999 444443 33322
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEecCCCC-----------CCcccHHHHHh---hhcCC-
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESI-EGKKFFLVLDDVWT-----------EEPQNWEQLLG---CLRCG- 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~-----------~~~~~~~~l~~---~l~~~- 322 (985)
.++.+..-+. ...+...+.+.- ...+.+|++|.++. .+.+....+.. .+..+
T Consensus 219 ------SElVqKYiGE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD 286 (406)
T COG1222 219 ------SELVQKYIGE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD 286 (406)
T ss_pred ------HHHHHHHhcc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC
Confidence 1122222121 112333333333 35689999999842 11122222333 33322
Q ss_pred -CCCcEEEEEcCchhhHHh--hcCcc-cccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh---
Q 001993 323 -SKESRILVTTRNEKVAIA--IGTTK-FNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP--- 395 (985)
Q Consensus 323 -~~gs~iivTtR~~~v~~~--~~~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP--- 395 (985)
....|||..|-..++... +.... ...+++..-+.+.-.++|+-++..-.. ...-+ .+.+++.|.|.-
T Consensus 287 ~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l--~~dvd----~e~la~~~~g~sGAd 360 (406)
T COG1222 287 PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL--ADDVD----LELLARLTEGFSGAD 360 (406)
T ss_pred CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC--ccCcC----HHHHHHhcCCCchHH
Confidence 345689998877664432 11211 145666644444445566655533221 12222 345666666654
Q ss_pred -hHHHHHHhhh
Q 001993 396 -LAVKTLGSLL 405 (985)
Q Consensus 396 -Lai~~~~~~L 405 (985)
-|+.+=|+++
T Consensus 361 lkaictEAGm~ 371 (406)
T COG1222 361 LKAICTEAGMF 371 (406)
T ss_pred HHHHHHHHhHH
Confidence 3455556655
No 241
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.031 Score=61.05 Aligned_cols=104 Identities=11% Similarity=0.169 Sum_probs=56.2
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC-CCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP-FDDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
.+++|+|+|++|+||||++..++.. ....=..+..+..... ....+-+....+.++..-....+.+.+...+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 4579999999999999999999873 3222123445554322 123333344444443322223455555555544322
Q ss_pred C-ceEEEEecCCCCCC--cccHHHHHhhhc
Q 001993 294 G-KKFFLVLDDVWTEE--PQNWEQLLGCLR 320 (985)
Q Consensus 294 ~-k~~LlVlDdv~~~~--~~~~~~l~~~l~ 320 (985)
. +.=++++|-..... ......+...+.
T Consensus 318 ~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk 347 (436)
T PRK11889 318 EARVDYILIDTAGKNYRASETVEEMIETMG 347 (436)
T ss_pred ccCCCEEEEeCccccCcCHHHHHHHHHHHh
Confidence 1 23577888775432 233455555554
No 242
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.37 E-value=0.0035 Score=67.77 Aligned_cols=50 Identities=18% Similarity=0.271 Sum_probs=41.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcc
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
+++|.++.++++++++..... ......+++.|+|++|+||||||+.+++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~-----------g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQ-----------GLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHh-----------cCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 699999999999999975431 00234589999999999999999999884
No 243
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.013 Score=69.53 Aligned_cols=154 Identities=19% Similarity=0.223 Sum_probs=86.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhh-ccCCc-----eEEE
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVR-NHFNE-----KIWV 252 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~-----~~wv 252 (985)
-++||++|++++++.|.... .++ -.++|.+|||||++|.-++. ++. +.-+. .++.
T Consensus 171 PvIGRd~EI~r~iqIL~RR~--------------KNN---PvLiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~s 231 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRT--------------KNN---PVLVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIYS 231 (786)
T ss_pred CCcChHHHHHHHHHHHhccC--------------CCC---CeEecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEEE
Confidence 37999999999999998654 122 25789999999999887776 321 22111 1111
Q ss_pred EeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCC---------CcccHHHHHhhhcCCC
Q 001993 253 CVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTE---------EPQNWEQLLGCLRCGS 323 (985)
Q Consensus 253 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~ 323 (985)
-++..-+.+......=.+.+...+.+.-+.++.+|++|.++.. ..+.-+-+.+.+.. +
T Consensus 232 ------------LD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-G 298 (786)
T COG0542 232 ------------LDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-G 298 (786)
T ss_pred ------------ecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-C
Confidence 1222223333333332333333333333455899999998541 12222334444432 2
Q ss_pred CCcEEEEEcCchhhHHhhc-----CcccccccCCCCChHHHHHHHHH
Q 001993 324 KESRILVTTRNEKVAIAIG-----TTKFNIIPIELLSDEDCWSIFSQ 365 (985)
Q Consensus 324 ~gs~iivTtR~~~v~~~~~-----~~~~~~~~l~~L~~~e~~~Lf~~ 365 (985)
.--.|--||-+ +.-..+. ...++.+.+..-+.+++...++-
T Consensus 299 eL~~IGATT~~-EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 299 ELRCIGATTLD-EYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRG 344 (786)
T ss_pred CeEEEEeccHH-HHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHH
Confidence 22234444443 3222221 11347889999999999988874
No 244
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.33 E-value=0.011 Score=57.78 Aligned_cols=131 Identities=23% Similarity=0.273 Sum_probs=67.7
Q ss_pred eecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCC
Q 001993 180 IRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFD 259 (985)
Q Consensus 180 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 259 (985)
++|....+.++++.+.... ....-|.|+|..|+||+.+|+.+++.... .-..-+-|+++. .+
T Consensus 1 liG~s~~m~~~~~~~~~~a---------------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r--~~~pfi~vnc~~-~~ 62 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA---------------SSDLPVLITGETGTGKELLARAIHNNSPR--KNGPFISVNCAA-LP 62 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT---------------TSTS-EEEECSTTSSHHHHHHHHHHCSTT--TTS-EEEEETTT-S-
T ss_pred CEeCCHHHHHHHHHHHHHh---------------CCCCCEEEEcCCCCcHHHHHHHHHHhhhc--ccCCeEEEehhh-hh
Confidence 4788888888888877543 12245679999999999999999983211 111122334432 23
Q ss_pred HHHHHHHHHHHhcCCCCCCC--CHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCC------C-----CCc
Q 001993 260 DIRIAKAILESLKGSATNAV--ESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCG------S-----KES 326 (985)
Q Consensus 260 ~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------~-----~gs 326 (985)
.+.+-..+.....+...... ... .+. +...=-|+||++..........+...+..+ . ...
T Consensus 63 ~~~~e~~LFG~~~~~~~~~~~~~~G----~l~---~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 63 EELLESELFGHEKGAFTGARSDKKG----LLE---QANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HHHHHHHHHEBCSSSSTTTSSEBEH----HHH---HTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred cchhhhhhhccccccccccccccCC----cee---eccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccc
Confidence 33332222222111111111 111 111 123346889999776666666677666522 1 245
Q ss_pred EEEEEcCch
Q 001993 327 RILVTTRNE 335 (985)
Q Consensus 327 ~iivTtR~~ 335 (985)
|||.||...
T Consensus 136 RiI~st~~~ 144 (168)
T PF00158_consen 136 RIIASTSKD 144 (168)
T ss_dssp EEEEEESS-
T ss_pred eEEeecCcC
Confidence 888888753
No 245
>PRK06696 uridine kinase; Validated
Probab=96.30 E-value=0.0044 Score=64.09 Aligned_cols=43 Identities=28% Similarity=0.449 Sum_probs=35.4
Q ss_pred cchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhc
Q 001993 182 GRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 182 Gr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.|.+-+++|.+.+.... .+.+.+|+|.|.+|+||||+|+.+..
T Consensus 2 ~~~~~~~~la~~~~~~~--------------~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 2 SRKQLIKELAEHILTLN--------------LTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred cHHHHHHHHHHHHHHhC--------------CCCceEEEEECCCCCCHHHHHHHHHH
Confidence 36667788888887533 35678999999999999999999997
No 246
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.24 E-value=0.022 Score=54.49 Aligned_cols=117 Identities=18% Similarity=0.206 Sum_probs=65.2
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEe---CCCCCHHHHHHHHHHHhc----CCC--CCCCCHHH----
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCV---SEPFDDIRIAKAILESLK----GSA--TNAVESET---- 283 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---s~~~~~~~~~~~i~~~l~----~~~--~~~~~~~~---- 283 (985)
..|-|++..|.||||+|...+- +..++=..+.++.. ........++..+ ..+. +.. ....+.++
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4788889999999999988876 33333223444433 2233444444333 0110 000 00011111
Q ss_pred ---HHHHHHHHhc-CceEEEEecCCCC---CCcccHHHHHhhhcCCCCCcEEEEEcCchh
Q 001993 284 ---VLKQLRESIE-GKKFFLVLDDVWT---EEPQNWEQLLGCLRCGSKESRILVTTRNEK 336 (985)
Q Consensus 284 ---~~~~l~~~l~-~k~~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 336 (985)
..+..++.+. +.-=|||||++-. ...-..+.+...+.....+..||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1222333343 3445999999832 223456778888877777889999999854
No 247
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.24 E-value=0.0028 Score=58.46 Aligned_cols=21 Identities=48% Similarity=0.638 Sum_probs=19.9
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+|+|+|++|+||||+|+.++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 248
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.21 E-value=0.027 Score=58.93 Aligned_cols=88 Identities=22% Similarity=0.273 Sum_probs=55.0
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCC-ceEEEEeCCCCC-HHHHHHHHHHHhcCC-------CCCCCCHHH--
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFN-EKIWVCVSEPFD-DIRIAKAILESLKGS-------ATNAVESET-- 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~s~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~~-- 283 (985)
.-+.++|.|.+|+|||||++.+++ .++.+|. .++++-+.+... +.++.+.+.+.=... ..+.....+
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 446789999999999999999998 4554554 455666666543 455555555431111 111111111
Q ss_pred ---HHHHHHHHh--c-CceEEEEecCC
Q 001993 284 ---VLKQLRESI--E-GKKFFLVLDDV 304 (985)
Q Consensus 284 ---~~~~l~~~l--~-~k~~LlVlDdv 304 (985)
..-.+.+++ + ++.+|+++||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 222345566 3 89999999999
No 249
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.17 E-value=0.022 Score=61.23 Aligned_cols=85 Identities=22% Similarity=0.250 Sum_probs=55.8
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSA-----TNAVESETVLKQL 288 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 288 (985)
+.-+++-|+|++|+||||||.+++.. ....-..++|+...+.++.. .+++++.+. ......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45689999999999999999998763 33333457899877665553 344443321 1223455555555
Q ss_pred HHHhc-CceEEEEecCCC
Q 001993 289 RESIE-GKKFFLVLDDVW 305 (985)
Q Consensus 289 ~~~l~-~k~~LlVlDdv~ 305 (985)
....+ +..-++|+|.|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55543 456799999984
No 250
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.14 E-value=0.0014 Score=59.03 Aligned_cols=54 Identities=30% Similarity=0.443 Sum_probs=25.2
Q ss_pred CCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccchhhhhccccceeecc
Q 001993 626 HLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPERIGQLINLRHLMNS 681 (985)
Q Consensus 626 ~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~ 681 (985)
-+..|+|++|. +.++|.++..++.|+.|+++.|+ +...|.-|..|.+|-.|+..
T Consensus 78 t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 78 TATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred hhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCC
Confidence 34444444444 44444444444444444444444 44444444444444444443
No 251
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.13 E-value=0.033 Score=61.02 Aligned_cols=130 Identities=16% Similarity=0.139 Sum_probs=69.6
Q ss_pred eecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCC
Q 001993 180 IRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFD 259 (985)
Q Consensus 180 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 259 (985)
++|+...++++.+.+.... ....-|.|+|..|+||+++|+.+++.... .. ..-+-|++..-.
T Consensus 1 liG~S~~m~~~~~~~~~~a---------------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r-~~-~pfv~vnc~~~~- 62 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA---------------PLDRPVLIIGERGTGKELIAARLHYLSKR-WQ-GPLVKLNCAALS- 62 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh---------------CCCCCEEEECCCCChHHHHHHHHHHhcCc-cC-CCeEEEeCCCCC-
Confidence 4677778888877776443 22345799999999999999999863211 11 122234444321
Q ss_pred HHHHHHHHHHHhcCCCCCCCCH-H-HHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC-----------CCc
Q 001993 260 DIRIAKAILESLKGSATNAVES-E-TVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------KES 326 (985)
Q Consensus 260 ~~~~~~~i~~~l~~~~~~~~~~-~-~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs 326 (985)
...+... +.+........ . .....+. ....-.|+||+|..........+...+..+. ...
T Consensus 63 -~~~l~~~---lfG~~~g~~~ga~~~~~G~~~---~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (329)
T TIGR02974 63 -ENLLDSE---LFGHEAGAFTGAQKRHQGRFE---RADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDV 135 (329)
T ss_pred -hHHHHHH---HhccccccccCcccccCCchh---hCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccce
Confidence 1222221 21211100000 0 0000011 1234468999997766666677777765332 234
Q ss_pred EEEEEcCc
Q 001993 327 RILVTTRN 334 (985)
Q Consensus 327 ~iivTtR~ 334 (985)
|||.||..
T Consensus 136 RiI~at~~ 143 (329)
T TIGR02974 136 RLVCATNA 143 (329)
T ss_pred EEEEechh
Confidence 78888753
No 252
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.12 E-value=0.026 Score=60.84 Aligned_cols=85 Identities=21% Similarity=0.236 Sum_probs=56.0
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSA-----TNAVESETVLKQL 288 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 288 (985)
+.-+++-|+|++|+||||||.+++.. ....-..++|++....++.. .+++++.+. ....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45679999999999999999998763 33334568899887766653 334443221 1223455555555
Q ss_pred HHHhc-CceEEEEecCCC
Q 001993 289 RESIE-GKKFFLVLDDVW 305 (985)
Q Consensus 289 ~~~l~-~k~~LlVlDdv~ 305 (985)
....+ +..-++|+|.|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55543 456799999973
No 253
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.11 E-value=0.039 Score=57.63 Aligned_cols=87 Identities=20% Similarity=0.277 Sum_probs=54.8
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC------------------
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSA------------------ 275 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~------------------ 275 (985)
+...++.|+|.+|+|||++|.++.... .+ +=..++|++..+. ..++.+++ ++++-..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 456899999999999999999996531 22 2346788888653 44554443 2232110
Q ss_pred --CCCCCHHHHHHHHHHHhcC-ceEEEEecCCC
Q 001993 276 --TNAVESETVLKQLRESIEG-KKFFLVLDDVW 305 (985)
Q Consensus 276 --~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 305 (985)
....+.+++...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666653 56689999974
No 254
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.10 E-value=0.031 Score=61.85 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.1
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
...++.++|++|+||||+|..++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999863
No 255
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.07 E-value=0.042 Score=60.23 Aligned_cols=133 Identities=17% Similarity=0.134 Sum_probs=72.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++|+...++++.+.+.... ....-|.|+|..|+||+++|+.++..... .-..-+.|++...
T Consensus 7 ~liG~S~~~~~~~~~i~~~a---------------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r--~~~pfv~v~c~~~- 68 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLA---------------PLDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAAL- 68 (326)
T ss_pred ccEECCHHHHHHHHHHHHHh---------------CCCCCEEEECCCCCcHHHHHHHHHHhCCc--cCCCeEEEeCCCC-
Confidence 68999999999988887543 22346899999999999999998862111 1112234444442
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC-----------CCcE
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------KESR 327 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ 327 (985)
+...+...+...-.+...... .. ....+. ....=.|+||||..........+...+..+. ...|
T Consensus 69 ~~~~~~~~lfg~~~~~~~g~~-~~-~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~R 143 (326)
T PRK11608 69 NENLLDSELFGHEAGAFTGAQ-KR-HPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVR 143 (326)
T ss_pred CHHHHHHHHccccccccCCcc-cc-cCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEE
Confidence 222222222111100000000 00 001111 1223358899998777667777777765322 1358
Q ss_pred EEEEcCc
Q 001993 328 ILVTTRN 334 (985)
Q Consensus 328 iivTtR~ 334 (985)
||.||..
T Consensus 144 iI~~s~~ 150 (326)
T PRK11608 144 LVCATNA 150 (326)
T ss_pred EEEeCch
Confidence 8888754
No 256
>PRK09354 recA recombinase A; Provisional
Probab=96.05 E-value=0.029 Score=60.88 Aligned_cols=85 Identities=21% Similarity=0.250 Sum_probs=57.1
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSA-----TNAVESETVLKQL 288 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 288 (985)
+.-+++-|+|++|+||||||.+++.. ....-..++||.....++.. .+++++.+. ......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45689999999999999999998764 33333568899887777653 344444321 1223455555555
Q ss_pred HHHhc-CceEEEEecCCC
Q 001993 289 RESIE-GKKFFLVLDDVW 305 (985)
Q Consensus 289 ~~~l~-~k~~LlVlDdv~ 305 (985)
...++ +..-+||+|.|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55553 456799999984
No 257
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.04 E-value=0.026 Score=55.07 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=44.7
Q ss_pred EEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC--ce
Q 001993 219 ISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEG--KK 296 (985)
Q Consensus 219 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--k~ 296 (985)
+.|.|.+|+|||++|.++... ....++++.-...++. +....|.+.....+ ......+....+.+.+.. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~-~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRP-AHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCC-CCceEeecHHHHHHHHHhcCCC
Confidence 679999999999999998752 2245677766666654 34444443222221 212212222233333321 23
Q ss_pred EEEEecCC
Q 001993 297 FFLVLDDV 304 (985)
Q Consensus 297 ~LlVlDdv 304 (985)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 47899986
No 258
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.019 Score=63.49 Aligned_cols=54 Identities=19% Similarity=0.372 Sum_probs=37.6
Q ss_pred ceecch---hhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcch
Q 001993 179 EIRGRN---HLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDN 240 (985)
Q Consensus 179 ~~vGr~---~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 240 (985)
++-|-| .|+++|+++|..+.. .. .-+..=++-|.++|++|.|||-||++|+-..
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~k-----ft---rLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTK-----FT---RLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHH-----hh---hccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 355665 477788888875431 00 0113446789999999999999999999853
No 259
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.02 E-value=0.081 Score=58.81 Aligned_cols=104 Identities=9% Similarity=0.089 Sum_probs=58.5
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhc--cCCceEEEEeCCCCC--HHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRN--HFNEKIWVCVSEPFD--DIRIAKAILESLKGSATNAVESETVLKQLR 289 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 289 (985)
..+++|.++|+.|+||||.+..++....... +-..+..+++. .+. ....++..++.++.+-......+.+...+.
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~ 250 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEIT 250 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHH
Confidence 3467999999999999999999887322211 11234455544 332 233355555555443223334455544444
Q ss_pred HHhcCceEEEEecCCCCCC--cccHHHHHhhhc
Q 001993 290 ESIEGKKFFLVLDDVWTEE--PQNWEQLLGCLR 320 (985)
Q Consensus 290 ~~l~~k~~LlVlDdv~~~~--~~~~~~l~~~l~ 320 (985)
+. ...-++++|-+.... ...+..+...+.
T Consensus 251 ~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~ 281 (388)
T PRK12723 251 QS--KDFDLVLVDTIGKSPKDFMKLAEMKELLN 281 (388)
T ss_pred Hh--CCCCEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 43 445688999986432 223345555554
No 260
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.016 Score=65.25 Aligned_cols=102 Identities=18% Similarity=0.326 Sum_probs=63.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
++-|.+..+.++.+++.....+... .+ . +-..++-|.++|++|.|||.||+.+++. ..-. ++.++..
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~--~~-l--Gv~PprGvLlHGPPGCGKT~lA~AiAge--l~vP-----f~~isAp- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVF--SS-L--GVRPPRGVLLHGPPGCGKTSLANAIAGE--LGVP-----FLSISAP- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhH--hh-c--CCCCCCceeeeCCCCccHHHHHHHHhhh--cCCc-----eEeecch-
Confidence 6789999999998888653311110 00 0 1234577899999999999999999993 3323 3333321
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCC
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVW 305 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 305 (985)
.|+..+.+ ...+.+.+.+.+.-..-++++++|+++
T Consensus 258 -------eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 -------EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred -------hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 22332222 223444444455556789999999985
No 261
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.00 E-value=0.029 Score=56.56 Aligned_cols=105 Identities=16% Similarity=0.171 Sum_probs=53.7
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh----
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESI---- 292 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l---- 292 (985)
+++.|.|.+|.||||+++.+... .... ...+.+.......... +.+..+.. ...... .+....
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~--~~~~-g~~v~~~apT~~Aa~~----L~~~~~~~---a~Ti~~---~l~~~~~~~~ 85 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEA--LEAA-GKRVIGLAPTNKAAKE----LREKTGIE---AQTIHS---FLYRIPNGDD 85 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHH--HHHT-T--EEEEESSHHHHHH----HHHHHTS----EEEHHH---HTTEECCEEC
T ss_pred eEEEEEECCCCCHHHHHHHHHHH--HHhC-CCeEEEECCcHHHHHH----HHHhhCcc---hhhHHH---HHhcCCcccc
Confidence 68899999999999999998763 3332 2333333333222222 22222211 001110 000000
Q ss_pred -----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchh
Q 001993 293 -----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEK 336 (985)
Q Consensus 293 -----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 336 (985)
..+.-+||+|++...+...+..+....+. .|+|+|+.--..+
T Consensus 86 ~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 86 EGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp CSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred cccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 12345999999987666667777666654 5778887754433
No 262
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.99 E-value=0.025 Score=60.50 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=46.6
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF-DDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
...+++|+|+.|+||||++..++.....+..-..+..|+..... .....+....+.++.......+...+...+.. +.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~-~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR-LR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH-cc
Confidence 46799999999999999999988732222111245556543311 22233333333333322223344444444433 23
Q ss_pred CceEEEEecCC
Q 001993 294 GKKFFLVLDDV 304 (985)
Q Consensus 294 ~k~~LlVlDdv 304 (985)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 346777754
No 263
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.98 E-value=0.028 Score=59.09 Aligned_cols=57 Identities=21% Similarity=0.306 Sum_probs=40.5
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhcc----CCceEEEEeCCCCCHHHHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNH----FNEKIWVCVSEPFDDIRIAKAILESLK 272 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~s~~~~~~~~~~~i~~~l~ 272 (985)
.-.+.=|+|.+|+|||+|+..++-...+... =..++|++-...|+...+. +|++...
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 4469999999999999999888653233221 2358999998889887765 4666543
No 264
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.96 E-value=0.014 Score=57.17 Aligned_cols=80 Identities=19% Similarity=0.271 Sum_probs=43.3
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCC---CHHHHHHHHHHHhcC
Q 001993 218 IISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAV---ESETVLKQLRESIEG 294 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~l~~~l~~ 294 (985)
++.|.|.+|+||||+|..+... .. ..++++.-...+ ..+....|..........-. ....+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~--~~---~~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQ--SG---LQVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHH--cC---CCcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 6899999999999999998762 11 123444433333 34455555444332221111 111233344433332
Q ss_pred ceEEEEecCC
Q 001993 295 KKFFLVLDDV 304 (985)
Q Consensus 295 k~~LlVlDdv 304 (985)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 337888986
No 265
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.96 E-value=0.055 Score=62.16 Aligned_cols=158 Identities=17% Similarity=0.151 Sum_probs=80.4
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
..++-|.++|++|.|||.+|+.+++. ....| +-+..+. +.... .......+...+...-.
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~--------------l~~~~-vGese~~l~~~f~~A~~ 316 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK--------------LFGGI-VGESESRMRQMIRIAEA 316 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH--------------hcccc-cChHHHHHHHHHHHHHh
Confidence 34567899999999999999999983 32222 1122111 11110 11112222222322223
Q ss_pred CceEEEEecCCCCCC-------cc-cH----HHHHhhhcCCCCCcEEEEEcCchh-hHHhh-cCcc-cccccCCCCChHH
Q 001993 294 GKKFFLVLDDVWTEE-------PQ-NW----EQLLGCLRCGSKESRILVTTRNEK-VAIAI-GTTK-FNIIPIELLSDED 358 (985)
Q Consensus 294 ~k~~LlVlDdv~~~~-------~~-~~----~~l~~~l~~~~~gs~iivTtR~~~-v~~~~-~~~~-~~~~~l~~L~~~e 358 (985)
..+++|++|+++..- .. .- ..+...+.....+.-||.||.+.+ +...+ .... ...+.++.-+.++
T Consensus 317 ~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~e 396 (489)
T CHL00195 317 LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEE 396 (489)
T ss_pred cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHH
Confidence 578999999995210 00 11 112222333334445666776543 22222 1111 1467788888888
Q ss_pred HHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001993 359 CWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 359 ~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 395 (985)
-.++|+.+............+ ...+++.+.|.-
T Consensus 397 R~~Il~~~l~~~~~~~~~~~d----l~~La~~T~GfS 429 (489)
T CHL00195 397 REKIFKIHLQKFRPKSWKKYD----IKKLSKLSNKFS 429 (489)
T ss_pred HHHHHHHHHhhcCCCcccccC----HHHHHhhcCCCC
Confidence 888888776543211001111 455666666653
No 266
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.96 E-value=0.11 Score=48.91 Aligned_cols=84 Identities=11% Similarity=0.147 Sum_probs=67.5
Q ss_pred ChHHHHHHHHHHHHhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHHHHHHhhhchhhH
Q 001993 1 MAEAIVSTILEQLALILVEQTAAGVRLIAGAEEEVENLHRRFHLIKAVVEDAEKRQM-KETAVRVWLDDLKHASYDMEDV 79 (985)
Q Consensus 1 ma~~~~~~~~~kl~~~~~~~~~~e~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~-~~~~~~~wl~~l~~~~yd~ed~ 79 (985)
+|+.+++++++...+.+...+.+.......++.-+++|.++++.|..++++.+.... -+..-+.-+++|.+...+++++
T Consensus 2 ~~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~L 81 (147)
T PF05659_consen 2 IAELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKEL 81 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 366677777777666666688888888889999999999999999999999987532 2222367788999999999999
Q ss_pred HHHHH
Q 001993 80 LDEWN 84 (985)
Q Consensus 80 ld~~~ 84 (985)
+.+|.
T Consensus 82 V~k~s 86 (147)
T PF05659_consen 82 VEKCS 86 (147)
T ss_pred HHHhc
Confidence 99875
No 267
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.96 E-value=0.00088 Score=60.33 Aligned_cols=93 Identities=17% Similarity=0.241 Sum_probs=75.8
Q ss_pred cccCCCCceEEEccCcCCcchhhhHHHhhccCCcceeecCC--CCCCCCcccccCCCCCeEecCCCCCccccchhhcCCC
Q 001993 572 MVYDETKLRSLVLDQRLSFKPRIALSKLFDRLTCLRSIDGL--PVGQIPKGIKKLIHLRYLALGENPWIKELPEALCELC 649 (985)
Q Consensus 572 ~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~--~~~~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~L~ 649 (985)
.+.....|....+++|.. ..+.+++-.+++.+..|++. .+..+|..+..++.||.|++++|. +...|.-|..|.
T Consensus 48 ~l~~~~el~~i~ls~N~f---k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~ 123 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGF---KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLI 123 (177)
T ss_pred HHhCCceEEEEecccchh---hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHH
Confidence 334556778888888864 44455555677788889888 688899999999999999999999 999999999999
Q ss_pred CCcEeeccCcccccccchhh
Q 001993 650 NLQTLDVSLCHYLKRLPERI 669 (985)
Q Consensus 650 ~L~~L~l~~~~~l~~lP~~i 669 (985)
+|-.||..++. ...+|-++
T Consensus 124 ~l~~Lds~~na-~~eid~dl 142 (177)
T KOG4579|consen 124 KLDMLDSPENA-RAEIDVDL 142 (177)
T ss_pred hHHHhcCCCCc-cccCcHHH
Confidence 99999999887 77777653
No 268
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.90 E-value=0.025 Score=56.84 Aligned_cols=88 Identities=15% Similarity=0.204 Sum_probs=51.7
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCC---CCCCCHHHHHHHHHHH
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE-PFDDIRIAKAILESLKGSA---TNAVESETVLKQLRES 291 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~ 291 (985)
++++.++|+.|+||||.+.+++.. .+..=..+..++... .....+.++..++.++..- ....+..++.....+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~--~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAAR--LKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHH--HhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 479999999999999988888873 333333466777643 3455677777788776432 2222333333322222
Q ss_pred hcC-ceEEEEecCCC
Q 001993 292 IEG-KKFFLVLDDVW 305 (985)
Q Consensus 292 l~~-k~~LlVlDdv~ 305 (985)
++. +-=++++|=..
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 332 33477777664
No 269
>PRK14974 cell division protein FtsY; Provisional
Probab=95.90 E-value=0.065 Score=58.37 Aligned_cols=101 Identities=16% Similarity=0.235 Sum_probs=53.7
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhc-cCCceEEEEeCCCC--CHHHHHHHHHHHhcCCC---CCCCCHHHH-HH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRN-HFNEKIWVCVSEPF--DDIRIAKAILESLKGSA---TNAVESETV-LK 286 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~---~~~~~~~~~-~~ 286 (985)
.++.++.++|++|+||||++..++.. ... .+ .++.+. .+.+ .....++.....++... ....+...+ ..
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~--l~~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ 213 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYY--LKKNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYD 213 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH--HHHcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHH
Confidence 35789999999999999988888863 332 23 333443 2333 23344555666655322 112232222 22
Q ss_pred HHHHHhcCceEEEEecCCCCC--CcccHHHHHhh
Q 001993 287 QLRESIEGKKFFLVLDDVWTE--EPQNWEQLLGC 318 (985)
Q Consensus 287 ~l~~~l~~k~~LlVlDdv~~~--~~~~~~~l~~~ 318 (985)
.+........=++++|-+... +...++.+...
T Consensus 214 ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i 247 (336)
T PRK14974 214 AIEHAKARGIDVVLIDTAGRMHTDANLMDELKKI 247 (336)
T ss_pred HHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHH
Confidence 233222222238999998653 23334455443
No 270
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.90 E-value=0.0099 Score=57.61 Aligned_cols=107 Identities=24% Similarity=0.309 Sum_probs=64.0
Q ss_pred cccccEEeEeccCCCCcCCCCCCCCccceeeccCCCCceEeCCcccCCchhhhhhhhhhhcccccccCCCCCccceeecc
Q 001993 814 LAKLRVLTLRFCNECECLPPLGKLPCLETLVLEGMSSVKRLGNGFLGIAEDHQARADQAETASSIIRDTAFPRLETLEFL 893 (985)
Q Consensus 814 l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~ 893 (985)
+.+...++|++| .+..++.+..++.|..|.|.+ +.+..+...+ ...+|+|+.|.|.
T Consensus 41 ~d~~d~iDLtdN-dl~~l~~lp~l~rL~tLll~n-NrIt~I~p~L----------------------~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 41 LDQFDAIDLTDN-DLRKLDNLPHLPRLHTLLLNN-NRITRIDPDL----------------------DTFLPNLKTLILT 96 (233)
T ss_pred ccccceeccccc-chhhcccCCCccccceEEecC-Ccceeeccch----------------------hhhccccceEEec
Confidence 445667777777 445556666777788888876 4466665432 1357788888887
Q ss_pred ccccccccccccccCcccccccccceeecccccCCCCC----CCCCCCCCcCeEEecCch
Q 001993 894 DMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALP----DYILGSTSLDKLLIYYSR 949 (985)
Q Consensus 894 ~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp----~~~~~l~~L~~L~i~~c~ 949 (985)
+ +++.++.... ..-.+|+|++|.+-++|.-.. + -.+..+|+|+.|+..+-.
T Consensus 97 n-Nsi~~l~dl~---pLa~~p~L~~Ltll~Npv~~k-~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 97 N-NSIQELGDLD---PLASCPKLEYLTLLGNPVEHK-KNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred C-cchhhhhhcc---hhccCCccceeeecCCchhcc-cCceeEEEEecCcceEeehhhhh
Confidence 6 2333332222 233678888888877653322 1 123456777877776653
No 271
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.89 E-value=0.0074 Score=56.28 Aligned_cols=31 Identities=39% Similarity=0.525 Sum_probs=24.5
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhcc-CCc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNH-FNE 248 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~ 248 (985)
.--|+|+|++|+||||+++.+++ ..+.. |..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e--~L~~~g~kv 36 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE--KLREKGYKV 36 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH--HHHhcCcee
Confidence 34689999999999999999998 44333 654
No 272
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.88 E-value=0.09 Score=59.44 Aligned_cols=89 Identities=17% Similarity=0.141 Sum_probs=49.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCC---CCCCHHHHHHHHH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE-PFDDIRIAKAILESLKGSAT---NAVESETVLKQLR 289 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~ 289 (985)
..+.+|.++|.+|+||||.|..++.. ....-..+..|++.. .....+.+..+.++++.... ...+.........
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~--L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARY--FKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 35789999999999999999999873 332222344444432 12234456666666543321 1123223222222
Q ss_pred HHhcCceEEEEecCCC
Q 001993 290 ESIEGKKFFLVLDDVW 305 (985)
Q Consensus 290 ~~l~~k~~LlVlDdv~ 305 (985)
+.+.+. -++|+|-.-
T Consensus 171 ~~~~~~-DvVIIDTAG 185 (437)
T PRK00771 171 EKFKKA-DVIIVDTAG 185 (437)
T ss_pred HHhhcC-CEEEEECCC
Confidence 333333 567788774
No 273
>PHA02244 ATPase-like protein
Probab=95.87 E-value=0.056 Score=58.68 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=19.3
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
-|.|+|++|+|||+||+.++.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~ 141 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAE 141 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999997
No 274
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.86 E-value=0.11 Score=50.11 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=39.4
Q ss_pred HHHHHHHhcCceEEEEecCCC-C-CCcccHHHHHhhhcCCCCCcEEEEEcCchhhHHhhcC
Q 001993 285 LKQLRESIEGKKFFLVLDDVW-T-EEPQNWEQLLGCLRCGSKESRILVTTRNEKVAIAIGT 343 (985)
Q Consensus 285 ~~~l~~~l~~k~~LlVlDdv~-~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~ 343 (985)
.-.+.+.+-+++-+|+=|.=- + +....|+-+.-+-.-+..|.-||++|-+.++.+.+..
T Consensus 145 RvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~ 205 (223)
T COG2884 145 RVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRH 205 (223)
T ss_pred HHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccC
Confidence 344666677888999988642 1 2234555544444445678999999999988777643
No 275
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.85 E-value=0.27 Score=52.70 Aligned_cols=154 Identities=12% Similarity=0.088 Sum_probs=90.7
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcch---h---hh--ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDN---E---VR--NHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLK 286 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~---~---~~--~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 286 (985)
-..+..++|..|+||+++|..+.+.- . .. .+-+...++.... .....+++..
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g--------------------~~i~vd~Ir~ 76 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD--------------------KDLSKSEFLS 76 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC--------------------CcCCHHHHHH
Confidence 34677799999999999999987621 0 01 1111222221101 1122333332
Q ss_pred HHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCch-hhHHhhcCcccccccCCCCChHHHH
Q 001993 287 QLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNE-KVAIAIGTTKFNIIPIELLSDEDCW 360 (985)
Q Consensus 287 ~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~~l~~L~~~e~~ 360 (985)
.+...- .+.+-++|+|++........+.++..+.....++.+|++|.+. .+...... ....+++.++++++..
T Consensus 77 l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~S-Rc~~~~f~~l~~~~l~ 155 (299)
T PRK07132 77 AINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVS-RCQVFNVKEPDQQKIL 155 (299)
T ss_pred HHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHh-CeEEEECCCCCHHHHH
Confidence 222210 1577889999997766667888999998777778777766443 33322111 1278999999999998
Q ss_pred HHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHH
Q 001993 361 SIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKT 400 (985)
Q Consensus 361 ~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 400 (985)
+.+.... . . ++.+..++...+|.=-|+..
T Consensus 156 ~~l~~~~----~--~-----~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 156 AKLLSKN----K--E-----KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHHHHcC----C--C-----hhHHHHHHHHcCCHHHHHHH
Confidence 8776531 1 1 12356666667763345544
No 276
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.85 E-value=0.04 Score=65.22 Aligned_cols=133 Identities=18% Similarity=0.182 Sum_probs=73.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++|....++++.+.+.... ....-|.|+|..|+|||++|+.+++.... .-..-+.|++..-.
T Consensus 197 ~liG~s~~~~~~~~~~~~~a---------------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r--~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 197 GIIGKSPAMRQVVDQARVVA---------------RSNSTVLLRGESGTGKELIAKAIHYLSPR--AKRPFVKVNCAALS 259 (534)
T ss_pred ceEECCHHHHHHHHHHHHHh---------------CcCCCEEEECCCCccHHHHHHHHHHhCCC--CCCCeEEeecCCCC
Confidence 79999999999998886443 22345789999999999999999873211 11122344444321
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC-----------CCcE
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------KESR 327 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ 327 (985)
+ ..+.. .+.+......... .....-.......-.|+||+|..........+...+..+. ...|
T Consensus 260 ~--~~~~~---~lfg~~~~~~~~~-~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~r 333 (534)
T TIGR01817 260 E--TLLES---ELFGHEKGAFTGA-IAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVR 333 (534)
T ss_pred H--HHHHH---HHcCCCCCccCCC-CcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEE
Confidence 1 22222 2222111000000 0000000001233468899998777677777777775332 1248
Q ss_pred EEEEcCc
Q 001993 328 ILVTTRN 334 (985)
Q Consensus 328 iivTtR~ 334 (985)
||.||..
T Consensus 334 iI~~s~~ 340 (534)
T TIGR01817 334 LVAATNR 340 (534)
T ss_pred EEEeCCC
Confidence 8888754
No 277
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.85 E-value=0.017 Score=58.42 Aligned_cols=111 Identities=11% Similarity=0.222 Sum_probs=59.2
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHH-HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDI-RIAKAILESLKGSATNAVESETVLKQLRESIEGK 295 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 295 (985)
.++.|+|+.|+||||++..+.. .........++.- .++.... .-...+..+- . ...+.......++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~--~~~~~~~~~i~t~-e~~~E~~~~~~~~~i~q~---~-vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID--YINKNKTHHILTI-EDPIEFVHESKRSLINQR---E-VGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HhhhcCCcEEEEE-cCCccccccCccceeeec---c-cCCCccCHHHHHHHHhcCC
Confidence 4799999999999999998776 3333333344332 2211100 0000111110 0 0111233455667777777
Q ss_pred eEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchhhHH
Q 001993 296 KFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEKVAI 339 (985)
Q Consensus 296 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 339 (985)
+=++++|++-+ .+......... ..|..|+.|+-...+..
T Consensus 75 pd~ii~gEird--~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 75 PDVILVGEMRD--LETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCEEEEcCCCC--HHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 88999999943 33333333332 24556777777665543
No 278
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.84 E-value=0.093 Score=52.17 Aligned_cols=120 Identities=19% Similarity=0.199 Sum_probs=65.8
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEE---eCCCCCHHHH------HHHHHHHhcCCC-----CCCCCH
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVC---VSEPFDDIRI------AKAILESLKGSA-----TNAVES 281 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~---~s~~~~~~~~------~~~i~~~l~~~~-----~~~~~~ 281 (985)
-.+++|+|..|.|||||++.++.. . ......+++. +. ..+.... ..++++.++... ....+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~--~-~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL--L-KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC--C-CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 359999999999999999999873 1 2233444432 21 1122221 122444443321 111222
Q ss_pred HH-HHHHHHHHhcCceEEEEecCCCC-CCcccHHHHHhhhcCC-CC-CcEEEEEcCchhhHH
Q 001993 282 ET-VLKQLRESIEGKKFFLVLDDVWT-EEPQNWEQLLGCLRCG-SK-ESRILVTTRNEKVAI 339 (985)
Q Consensus 282 ~~-~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~iivTtR~~~v~~ 339 (985)
.+ ..-.+.+.+-..+-++++|+--. .+....+.+...+... .. +.-||++|.+.....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 22 22234556667888999999743 2333444455544422 22 567888888766543
No 279
>PTZ00494 tuzin-like protein; Provisional
Probab=95.84 E-value=1.1 Score=49.42 Aligned_cols=165 Identities=13% Similarity=0.111 Sum_probs=98.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.+|.|+.|-..+...|...+ ...++++.+.|.-|.||++|.+.....+. -..++|.+....
T Consensus 372 ~~V~R~~eE~~vRqvL~qld--------------~aHPRIvV~TG~~GcGKSslcRsAvrkE~-----~paV~VDVRg~E 432 (664)
T PTZ00494 372 FEVRREDEEALVRSVLTQMA--------------PSHPRIVALAGGSGGGRCVPCRRAVRVEG-----VALVHVDVGGTE 432 (664)
T ss_pred cccchhhHHHHHHHHHhhcc--------------CCCCcEEEEecCCCCCchHHHHHHHHHcC-----CCeEEEEecCCc
Confidence 79999999888888887665 46789999999999999999988776322 246778877654
Q ss_pred CHHHHHHHHHHHhcCCCCCC--CCHHHHHHHHH---HHhcCceEEEEecCCCCCCc-ccHHHHHhhhcCCCCCcEEEEEc
Q 001993 259 DDIRIAKAILESLKGSATNA--VESETVLKQLR---ESIEGKKFFLVLDDVWTEEP-QNWEQLLGCLRCGSKESRILVTT 332 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~---~~l~~k~~LlVlDdv~~~~~-~~~~~l~~~l~~~~~gs~iivTt 332 (985)
+-++.|.+.++-+..+. +-++-+.+..+ ....++.-+||+-==...+. ..+++. ..|.....-++|++--
T Consensus 433 ---DtLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EV 508 (664)
T PTZ00494 433 ---DTLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAV 508 (664)
T ss_pred ---chHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeec
Confidence 45777888887654332 11222222222 22346666666532211111 112221 2233334456677654
Q ss_pred CchhhHHhhcC-cccccccCCCCChHHHHHHHHHH
Q 001993 333 RNEKVAIAIGT-TKFNIIPIELLSDEDCWSIFSQL 366 (985)
Q Consensus 333 R~~~v~~~~~~-~~~~~~~l~~L~~~e~~~Lf~~~ 366 (985)
--+.+...... ..-.-|.+.+++.++|.++..+.
T Consensus 509 plESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 509 PMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred hHhhhchhhccCccceeEecCCcCHHHHHHHHhcc
Confidence 43332211111 11246788999999998887664
No 280
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.82 E-value=0.067 Score=58.87 Aligned_cols=90 Identities=13% Similarity=0.162 Sum_probs=51.7
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE-PFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
...++.++|+.|+||||++.+++.....+.....+..++... .....+.++...+.++.......+..++...+. .+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-Hhc
Confidence 346999999999999999999987321121123455555332 234455566666666543322223333333333 334
Q ss_pred CceEEEEecCCCC
Q 001993 294 GKKFFLVLDDVWT 306 (985)
Q Consensus 294 ~k~~LlVlDdv~~ 306 (985)
++ =++++|....
T Consensus 215 ~~-DlVLIDTaG~ 226 (374)
T PRK14722 215 NK-HMVLIDTIGM 226 (374)
T ss_pred CC-CEEEEcCCCC
Confidence 44 4566999854
No 281
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.81 E-value=0.09 Score=56.30 Aligned_cols=56 Identities=25% Similarity=0.301 Sum_probs=38.3
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcC
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKG 273 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 273 (985)
.-.++.|.|.+|+||||++.+++... ...+=..++|++... +..++...+...+.+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~-~~~~g~~vl~iS~E~--~~~~~~~r~~~~~~~ 84 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDL-ITQHGVRVGTISLEE--PVVRTARRLLGQYAG 84 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-HHhcCceEEEEEccc--CHHHHHHHHHHHHhC
Confidence 34588999999999999999987732 122124578887755 445666666655443
No 282
>PRK08233 hypothetical protein; Provisional
Probab=95.77 E-value=0.028 Score=56.08 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=21.2
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+|+|.|.+|+||||+|+.++.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 36999999999999999999987
No 283
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.74 E-value=0.007 Score=59.27 Aligned_cols=90 Identities=22% Similarity=0.232 Sum_probs=51.0
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhh-ccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVR-NHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 294 (985)
..++.++|+.|+|||.||+.++. ... +.....+-++.+.-....+ ...++..+.+..... +. ..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~~~~-~~~~~~~l~~~~~~~---------v~---~~ 67 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSEGDD-VESSVSKLLGSPPGY---------VG---AE 67 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCSHHH-CSCHCHHHHHHTTCH---------HH---HH
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccccch-HHhhhhhhhhcccce---------ee---cc
Confidence 46899999999999999999987 343 3444555555544222111 011111111111000 00 01
Q ss_pred ceEEEEecCCCCCCc-----------ccHHHHHhhhc
Q 001993 295 KKFFLVLDDVWTEEP-----------QNWEQLLGCLR 320 (985)
Q Consensus 295 k~~LlVlDdv~~~~~-----------~~~~~l~~~l~ 320 (985)
..-+|+||+++.... ..|+.++..+.
T Consensus 68 ~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le 104 (171)
T PF07724_consen 68 EGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLE 104 (171)
T ss_dssp HHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHhhccccccccchhhHHHHHHHHHHHhc
Confidence 112999999976666 66888887775
No 284
>PRK07667 uridine kinase; Provisional
Probab=95.72 E-value=0.02 Score=57.57 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=22.7
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+...+|+|.|.+|+||||+|+.+..
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4558999999999999999999987
No 285
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.066 Score=60.46 Aligned_cols=157 Identities=20% Similarity=0.332 Sum_probs=87.3
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGK 295 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 295 (985)
+.-|.+||++|.|||-||++|+| +.+.+| +++-.+ +++..- .......+...+++.-..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP----ELlNkY---------VGESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP----ELLNKY---------VGESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH----HHHHHH---------hhhHHHHHHHHHHHhhcCC
Confidence 56789999999999999999999 445454 333221 111111 1112233344444444578
Q ss_pred eEEEEecCCCCC-----Cccc------HHHHHhhhcC--CCCCcEEEEEcCchhhHH-hh-cCcc-cccccCCCCChHHH
Q 001993 296 KFFLVLDDVWTE-----EPQN------WEQLLGCLRC--GSKESRILVTTRNEKVAI-AI-GTTK-FNIIPIELLSDEDC 359 (985)
Q Consensus 296 ~~LlVlDdv~~~-----~~~~------~~~l~~~l~~--~~~gs~iivTtR~~~v~~-~~-~~~~-~~~~~l~~L~~~e~ 359 (985)
+++|+||.++.. +... .++++.-+.. ...|.-||-.|-.+++-. .+ .... ...+-++.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 999999998431 1112 2334433332 245666676666655432 22 1111 14566777788888
Q ss_pred HHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCC
Q 001993 360 WSIFSQLALSRRLDIEESENFENIGRQIVSKCKGL 394 (985)
Q Consensus 360 ~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 394 (985)
.++++...-....+....-++++++.. .+|.|.
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gf 717 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGF 717 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCC
Confidence 888887765433322334455555543 345554
No 286
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.70 E-value=0.082 Score=52.19 Aligned_cols=86 Identities=15% Similarity=0.194 Sum_probs=43.7
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC-CCHHHHHHHHHHHhcCC---CCCCCCHHHHH-HHHHHHh
Q 001993 218 IISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP-FDDIRIAKAILESLKGS---ATNAVESETVL-KQLRESI 292 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~---~~~~~~~~~~~-~~l~~~l 292 (985)
++.++|++|+||||++..++. .....=..++.+..... ....+.+...++..+.. .....+..++. +.+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~--~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL--YLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999987 33322123444443321 12233333334433221 11223344333 3333333
Q ss_pred cCceEEEEecCCC
Q 001993 293 EGKKFFLVLDDVW 305 (985)
Q Consensus 293 ~~k~~LlVlDdv~ 305 (985)
.+..-++|+|-..
T Consensus 80 ~~~~d~viiDt~g 92 (173)
T cd03115 80 EENFDVVIVDTAG 92 (173)
T ss_pred hCCCCEEEEECcc
Confidence 4343356677764
No 287
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.69 E-value=0.073 Score=52.82 Aligned_cols=117 Identities=18% Similarity=0.116 Sum_probs=60.2
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcC--CC------------CCCCCHH
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKG--SA------------TNAVESE 282 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~--~~------------~~~~~~~ 282 (985)
.+++|+|..|.|||||++.++.-.. .....+++.-. +.......+-..++- +. ....+..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHH
Confidence 5899999999999999999987321 11223332111 111110111111110 00 1111112
Q ss_pred H-HHHHHHHHhcCceEEEEecCCCC-CCcccHHHHHhhhcCCCCCcEEEEEcCchhhHH
Q 001993 283 T-VLKQLRESIEGKKFFLVLDDVWT-EEPQNWEQLLGCLRCGSKESRILVTTRNEKVAI 339 (985)
Q Consensus 283 ~-~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 339 (985)
+ ..-.+.+.+-.++=++++|+... -+....+.+...+.....+..||++|.+.....
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 2 22234455667888999999753 223333444444443234667888888877654
No 288
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.67 E-value=0.04 Score=59.63 Aligned_cols=59 Identities=19% Similarity=0.191 Sum_probs=42.2
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhh----ccCCceEEEEeCCCCCHHHHHHHHHHHhcC
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVR----NHFNEKIWVCVSEPFDDIRIAKAILESLKG 273 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 273 (985)
+.-+++-|+|.+|+|||+|+.+++-..... ..=..++||+....|+++.+.+ +++.++.
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 455799999999999999998876432221 1113689999988888877654 5666543
No 289
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.66 E-value=0.094 Score=49.91 Aligned_cols=105 Identities=16% Similarity=0.135 Sum_probs=58.5
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHH-HHHHHHHHHhcC
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESE-TVLKQLRESIEG 294 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~l~~~l~~ 294 (985)
-.+++|+|..|.|||||++.+.... ......+|+.-.. .+.-.. . .+.. ...-.+.+.+-.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~~-~-lS~G~~~rv~laral~~ 87 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYFE-Q-LSGGEKMRLALAKLLLE 87 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEEc-c-CCHHHHHHHHHHHHHhc
Confidence 3589999999999999999998732 1223334432100 000000 0 1111 222234455666
Q ss_pred ceEEEEecCCCC-CCcccHHHHHhhhcCCCCCcEEEEEcCchhhHHh
Q 001993 295 KKFFLVLDDVWT-EEPQNWEQLLGCLRCGSKESRILVTTRNEKVAIA 340 (985)
Q Consensus 295 k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 340 (985)
++-++++|+--. -+......+...+... +..||++|.+.+....
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 778999998742 3334445555555433 2368888887665543
No 290
>PRK13695 putative NTPase; Provisional
Probab=95.64 E-value=0.015 Score=57.54 Aligned_cols=22 Identities=50% Similarity=0.522 Sum_probs=19.7
Q ss_pred EEEEEccCCchHHHHHHHHhcc
Q 001993 218 IISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
.++|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 291
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.63 E-value=0.059 Score=55.94 Aligned_cols=25 Identities=48% Similarity=0.687 Sum_probs=23.2
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+...+++|.|+.|+|||||++.+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999999987
No 292
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.62 E-value=0.088 Score=54.27 Aligned_cols=125 Identities=15% Similarity=0.165 Sum_probs=73.2
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC-----CCCHHHHHHHHHHHhcCCC------CCCCCHHHH
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE-----PFDDIRIAKAILESLKGSA------TNAVESETV 284 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~------~~~~~~~~~ 284 (985)
-.+++|+|..|.||||+++.+.. ....-...+++.-.+ .....+...++++.++... +...+..+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 45899999999999999999986 333333444443221 2223345566666665432 222233343
Q ss_pred HHH-HHHHhcCceEEEEecCCCCCC-cccHHHHHhhhc--CCCCCcEEEEEcCchhhHHhhcC
Q 001993 285 LKQ-LRESIEGKKFFLVLDDVWTEE-PQNWEQLLGCLR--CGSKESRILVTTRNEKVAIAIGT 343 (985)
Q Consensus 285 ~~~-l~~~l~~k~~LlVlDdv~~~~-~~~~~~l~~~l~--~~~~gs~iivTtR~~~v~~~~~~ 343 (985)
+.. +.+.|.-++-++|.|..-+.- ...-.++...+. ....|-..+.-|-+-.+...+..
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 333 556778899999999974321 112223333332 12345567888888777776654
No 293
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.60 E-value=0.024 Score=60.99 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=23.8
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
..+..++|||++|.|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999983
No 294
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.066 Score=61.28 Aligned_cols=168 Identities=20% Similarity=0.222 Sum_probs=82.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
++-|.|+-+.+|-+.+.-+-.. .++... -+-..++-|.++|+||.|||++|+.+++ .-+..| +.+...
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~---pe~F~r-~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkgp- 502 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKH---PEKFAR-FGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKGP- 502 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhc---hHHHHH-hcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccCH-
Confidence 5666777666666555422100 000000 0124578899999999999999999999 444444 222211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC-----------cccHHHHHhhhcCCCCCcE
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE-----------PQNWEQLLGCLRCGSKESR 327 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~~~~~gs~ 327 (985)
++... ........+...+++.-+-.+++++||.++... ......++.-+........
T Consensus 503 -------EL~sk-----~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~ 570 (693)
T KOG0730|consen 503 -------ELFSK-----YVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKN 570 (693)
T ss_pred -------HHHHH-----hcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCc
Confidence 11111 111223333444444444567899999884311 1112223333322222223
Q ss_pred EEE--Ec-CchhhHHhh-cCcc-cccccCCCCChHHHHHHHHHHhcCC
Q 001993 328 ILV--TT-RNEKVAIAI-GTTK-FNIIPIELLSDEDCWSIFSQLALSR 370 (985)
Q Consensus 328 iiv--Tt-R~~~v~~~~-~~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~ 370 (985)
|+| .| |...+...+ .... ...+.+..-+.+.-.++|+.++-.-
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm 618 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM 618 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC
Confidence 333 23 333333322 2111 1456666666666778888877543
No 295
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.59 E-value=0.059 Score=58.92 Aligned_cols=58 Identities=17% Similarity=0.250 Sum_probs=41.1
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhc----cCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRN----HFNEKIWVCVSEPFDDIRIAKAILESLK 272 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 272 (985)
+...++-|+|.+|+||||++.+++....... .=..++||+....|+...+. ++++.++
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 3568999999999999999999976432211 11268999998888877654 4455443
No 296
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.58 E-value=0.077 Score=57.92 Aligned_cols=59 Identities=20% Similarity=0.175 Sum_probs=42.6
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhh----ccCCceEEEEeCCCCCHHHHHHHHHHHhcC
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVR----NHFNEKIWVCVSEPFDDIRIAKAILESLKG 273 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 273 (985)
+.-.+.-|+|.+|+|||+|+..++-..... +.-..++|++....|++.++.. +++.++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 455789999999999999999886432221 1124689999999888887654 5565543
No 297
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.56 E-value=0.022 Score=56.92 Aligned_cols=78 Identities=21% Similarity=0.316 Sum_probs=44.6
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHH--hcCCCCCCCCHHHHHHHHHHH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILES--LKGSATNAVESETVLKQLRES 291 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~--l~~~~~~~~~~~~~~~~l~~~ 291 (985)
..+.+|+|.|.+|+||||+|+.++. .++... ++-++... +-...-.....+. ..-..+...+.+-+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~--~~~I~~D~-YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVEK--VVVISLDD-YYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcCc--ceEeeccc-cccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 3568999999999999999999998 444331 12122111 1111111111111 111234456677777888887
Q ss_pred hcCce
Q 001993 292 IEGKK 296 (985)
Q Consensus 292 l~~k~ 296 (985)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 77777
No 298
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.55 E-value=0.09 Score=51.73 Aligned_cols=114 Identities=18% Similarity=0.244 Sum_probs=61.7
Q ss_pred CEEEEEEccCCchHHHHHHHHhcc---hhhhcc---CC--ceEEEEeCCCCCHHHHHHHHHHHhcCCCC------CCCCH
Q 001993 216 PTIISITGMGGIGKTTLAKLIFND---NEVRNH---FN--EKIWVCVSEPFDDIRIAKAILESLKGSAT------NAVES 281 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~---~~~~~~---f~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~------~~~~~ 281 (985)
-.+++|+|+.|+|||||.+.+..+ ..+... |. .+.|+ .+ .+.++.++.... ...+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 469999999999999999988632 011111 11 12232 11 345565553321 11122
Q ss_pred HH-HHHHHHHHhcCc--eEEEEecCCCC-CCcccHHHHHhhhcCC-CCCcEEEEEcCchhhHH
Q 001993 282 ET-VLKQLRESIEGK--KFFLVLDDVWT-EEPQNWEQLLGCLRCG-SKESRILVTTRNEKVAI 339 (985)
Q Consensus 282 ~~-~~~~l~~~l~~k--~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 339 (985)
.+ ..-.+.+.+-.+ +-++++|+--. -+....+.+...+... ..|..||++|.+.+...
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22 222244455556 77888898743 2333344444444321 24667889998877654
No 299
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.54 E-value=0.058 Score=65.90 Aligned_cols=133 Identities=21% Similarity=0.227 Sum_probs=75.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++|+...++++.+.+.... ....-|.|+|..|+|||++|+.+++... + .-...+.+++..-.
T Consensus 377 ~liG~S~~~~~~~~~~~~~a---------------~~~~pVLI~GE~GTGK~~lA~~ih~~s~-r-~~~~~v~i~c~~~~ 439 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVA---------------QSDSTVLILGETGTGKELIARAIHNLSG-R-NNRRMVKMNCAAMP 439 (686)
T ss_pred ceeecCHHHHHHHHHHHHHh---------------CCCCCEEEECCCCcCHHHHHHHHHHhcC-C-CCCCeEEEecccCC
Confidence 68999999999887776433 2234689999999999999999987421 1 11233445544322
Q ss_pred CHHHHHHH-HHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC-----------CCc
Q 001993 259 DDIRIAKA-ILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------KES 326 (985)
Q Consensus 259 ~~~~~~~~-i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs 326 (985)
...+.. +.....+..... . ......+ -....=.|+||||..........+...+..+. .+.
T Consensus 440 --~~~~~~~lfg~~~~~~~g~-~-~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 512 (686)
T PRK15429 440 --AGLLESDLFGHERGAFTGA-S-AQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDV 512 (686)
T ss_pred --hhHhhhhhcCccccccccc-c-cchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceE
Confidence 122222 111111110010 0 0011111 11233569999998777667777777765321 245
Q ss_pred EEEEEcCch
Q 001993 327 RILVTTRNE 335 (985)
Q Consensus 327 ~iivTtR~~ 335 (985)
|||.||...
T Consensus 513 RiI~~t~~~ 521 (686)
T PRK15429 513 RLIAATNRD 521 (686)
T ss_pred EEEEeCCCC
Confidence 888888653
No 300
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.54 E-value=0.04 Score=55.55 Aligned_cols=79 Identities=23% Similarity=0.293 Sum_probs=43.6
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhh-ccCC---ceEEEEeCCCCCHHHHHHHHHHHh----cCCCCCCCCHHHHHHHHH
Q 001993 218 IISITGMGGIGKTTLAKLIFNDNEVR-NHFN---EKIWVCVSEPFDDIRIAKAILESL----KGSATNAVESETVLKQLR 289 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~---~~~wv~~s~~~~~~~~~~~i~~~l----~~~~~~~~~~~~~~~~l~ 289 (985)
||+|.|.+|+||||+|+.+.. ... .... ....++............. -... ........+.+.+...+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 699999999999999999987 333 2222 1333333322222222221 1111 112234566777777777
Q ss_pred HHhcCceEEE
Q 001993 290 ESIEGKKFFL 299 (985)
Q Consensus 290 ~~l~~k~~Ll 299 (985)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666665433
No 301
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.53 E-value=0.093 Score=54.78 Aligned_cols=50 Identities=14% Similarity=0.375 Sum_probs=35.7
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAI 267 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 267 (985)
+.-.++.|.|.+|+|||++|.++.... . ..-..++||+... ++.++.+.+
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHHH
Confidence 456899999999999999999887632 2 2345688888655 455555543
No 302
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.51 E-value=0.068 Score=53.84 Aligned_cols=178 Identities=19% Similarity=0.219 Sum_probs=91.9
Q ss_pred ceecchhhHHH---HHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeC
Q 001993 179 EIRGRNHLQNK---VASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVS 255 (985)
Q Consensus 179 ~~vGr~~~~~~---l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 255 (985)
+++|.++...+ |++.|..++ .. ++-.++-|..+|++|.|||.+|+.+++.. +..| +-|.+.
T Consensus 122 dViGqEeAK~kcrli~~yLenPe----------~F-g~WAPknVLFyGppGTGKTm~Akalane~--kvp~---l~vkat 185 (368)
T COG1223 122 DVIGQEEAKRKCRLIMEYLENPE----------RF-GDWAPKNVLFYGPPGTGKTMMAKALANEA--KVPL---LLVKAT 185 (368)
T ss_pred hhhchHHHHHHHHHHHHHhhChH----------Hh-cccCcceeEEECCCCccHHHHHHHHhccc--CCce---EEechH
Confidence 57888766543 566665433 10 13456889999999999999999999943 2222 112111
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH-HhcCceEEEEecCCCCCC------------cccHHHHHhhhc--
Q 001993 256 EPFDDIRIAKAILESLKGSATNAVESETVLKQLRE-SIEGKKFFLVLDDVWTEE------------PQNWEQLLGCLR-- 320 (985)
Q Consensus 256 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~------------~~~~~~l~~~l~-- 320 (985)
.-|-+..+ +....+..+.+ .-+.-++++++|.++-.. .+..+.++.-+.
T Consensus 186 ---------~liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi 249 (368)
T COG1223 186 ---------ELIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGI 249 (368)
T ss_pred ---------HHHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCc
Confidence 11111111 11111222222 224578999999873211 112223333333
Q ss_pred CCCCCcEEEEEcCchhhHHh-hcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCC
Q 001993 321 CGSKESRILVTTRNEKVAIA-IGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGL 394 (985)
Q Consensus 321 ~~~~gs~iivTtR~~~v~~~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 394 (985)
..+.|...|-.|-..+.... ....-..-++..--+++|-.+++...+-.-..+ .+.-.+.++++.+|+
T Consensus 250 ~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plp------v~~~~~~~~~~t~g~ 318 (368)
T COG1223 250 KENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLP------VDADLRYLAAKTKGM 318 (368)
T ss_pred ccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCc------cccCHHHHHHHhCCC
Confidence 23456666666665554322 221111345666667888888888776322111 111145566666665
No 303
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.48 E-value=0.13 Score=50.23 Aligned_cols=116 Identities=12% Similarity=0.111 Sum_probs=60.5
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhh-hcc--CC---ceEEEEeCCCCC--HHHHHHHHHHHhcCCCCCCCCH-HHHHH
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEV-RNH--FN---EKIWVCVSEPFD--DIRIAKAILESLKGSATNAVES-ETVLK 286 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~--f~---~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~-~~~~~ 286 (985)
-.+++|+|..|.|||||++.++.-... .+. ++ .+.++ .+... ...+...+.- ......+. +...-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~----~~~~~LS~G~~~rv 100 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIY----PWDDVLSGGEQQRL 100 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhc----cCCCCCCHHHHHHH
Confidence 358999999999999999999874211 111 11 12222 22221 1122222221 01122222 22233
Q ss_pred HHHHHhcCceEEEEecCCCC-CCcccHHHHHhhhcCCCCCcEEEEEcCchhhHH
Q 001993 287 QLRESIEGKKFFLVLDDVWT-EEPQNWEQLLGCLRCGSKESRILVTTRNEKVAI 339 (985)
Q Consensus 287 ~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~ 339 (985)
.+.+.+-.++=++++|+--. .+......+...+... +..||++|.+.....
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 34556667788889998642 2233344444444432 356888888776543
No 304
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.48 E-value=0.15 Score=55.73 Aligned_cols=91 Identities=14% Similarity=0.085 Sum_probs=55.7
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC-CCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP-FDDIRIAKAILESLKGSATNAVESETVLKQLRESI 292 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 292 (985)
.+.+++.|+|+.|+||||++..++.. ....-..+.+|++... ....+.++...+.++.......+.+++...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 35689999999999999999999863 2222234666665432 23344555556655443323345566655554332
Q ss_pred c-CceEEEEecCCCC
Q 001993 293 E-GKKFFLVLDDVWT 306 (985)
Q Consensus 293 ~-~k~~LlVlDdv~~ 306 (985)
. +..=++++|-+..
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 1 3456888898854
No 305
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.47 E-value=0.071 Score=58.30 Aligned_cols=59 Identities=19% Similarity=0.186 Sum_probs=42.1
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhc----cCCceEEEEeCCCCCHHHHHHHHHHHhcC
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRN----HFNEKIWVCVSEPFDDIRIAKAILESLKG 273 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 273 (985)
+...++-|+|.+|+|||+||..++-...... .-..++|++....|+++++ .+|++.++.
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 4567899999999999999988875322211 1126899999998888765 455666543
No 306
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.47 E-value=0.072 Score=56.03 Aligned_cols=89 Identities=24% Similarity=0.252 Sum_probs=56.4
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCC-CCCCCCHHH---HHHHHH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGS-ATNAVESET---VLKQLR 289 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-~~~~~~~~~---~~~~l~ 289 (985)
+.-+++=|+|+.|+||||+|.+++-. ....-..++|++.-..+++..+..--...+..- .....+.++ +...+.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 56789999999999999999988763 333344789999999888876543332212211 112223333 333333
Q ss_pred HHhcCceEEEEecCC
Q 001993 290 ESIEGKKFFLVLDDV 304 (985)
Q Consensus 290 ~~l~~k~~LlVlDdv 304 (985)
.....+--|+|+|.+
T Consensus 136 ~~~~~~i~LvVVDSv 150 (279)
T COG0468 136 RSGAEKIDLLVVDSV 150 (279)
T ss_pred HhccCCCCEEEEecC
Confidence 333334679999998
No 307
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.46 E-value=0.014 Score=66.54 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=39.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhc
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+++|.++.+++|++.|..... .. ...-+++.++|++|+||||||+.+++
T Consensus 77 d~yGlee~ieriv~~l~~Aa~----------gl-~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQ----------GL-EEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHH----------hc-CCCCceEEEecCCCCCchHHHHHHHH
Confidence 589999999999999943220 00 23457999999999999999999997
No 308
>PRK10867 signal recognition particle protein; Provisional
Probab=95.43 E-value=0.075 Score=59.93 Aligned_cols=25 Identities=40% Similarity=0.628 Sum_probs=21.9
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+.+|.++|.+|+||||.|..++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3568999999999999998888876
No 309
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.41 E-value=0.33 Score=48.76 Aligned_cols=105 Identities=19% Similarity=0.254 Sum_probs=63.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++|.|...+.+++--..-- . +...--|.+||.-|.|||+|++++.+ .+....-..+-| ..
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~----------~---G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrLVEV--~k-- 121 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFA----------E---GLPANNVLLWGARGTGKSSLVKALLN--EYADEGLRLVEV--DK-- 121 (287)
T ss_pred HHhCchHHHHHHHHHHHHHH----------c---CCcccceEEecCCCCChHHHHHHHHH--HHHhcCCeEEEE--cH--
Confidence 68999888888765332111 0 12334589999999999999999998 455444333222 21
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCC-CCCcccHHHHHhhhcC
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVW-TEEPQNWEQLLGCLRC 321 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~-~~~~~~~~~l~~~l~~ 321 (985)
.+..+...+...++. ...||+|+.||.. +.+......+...+..
T Consensus 122 -----------------~dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG 166 (287)
T COG2607 122 -----------------EDLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEG 166 (287)
T ss_pred -----------------HHHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcC
Confidence 011112222222221 3679999999995 2334566677777763
No 310
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.40 E-value=0.055 Score=55.59 Aligned_cols=73 Identities=16% Similarity=0.126 Sum_probs=38.9
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhhc-cC-CceEEEEeCCCCCHHHHHHHHHHHhc-CCCCCCCCHHHHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFNDNEVRN-HF-NEKIWVCVSEPFDDIRIAKAILESLK-GSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f-~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~l~~~l~ 293 (985)
+|+|.|.+|+||||+|+.+.. .... .. ..+..++...-+.....+.... .+. .......+.+.+...+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~--~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~-~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA--LLSRWPDHPNVELITTDGFLYPNKELIERG-LMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH--HHhhcCCCCcEEEEecCcccCcHHHHHHhh-hhhcCCCcccCCHHHHHHHHHHHHC
Confidence 589999999999999999987 3321 01 1344555444332222222211 111 112344555666555555444
No 311
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.39 E-value=0.069 Score=56.72 Aligned_cols=134 Identities=27% Similarity=0.314 Sum_probs=73.0
Q ss_pred eecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcch-hhhccCCceEE----EEe
Q 001993 180 IRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDN-EVRNHFNEKIW----VCV 254 (985)
Q Consensus 180 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-~~~~~f~~~~w----v~~ 254 (985)
+-+|..+..--+++|. ++++..|.+.|.+|.|||-||....=.+ ..+..|..++- +.+
T Consensus 226 i~prn~eQ~~ALdlLl-----------------d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpv 288 (436)
T COG1875 226 IRPRNAEQRVALDLLL-----------------DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPV 288 (436)
T ss_pred cCcccHHHHHHHHHhc-----------------CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCc
Confidence 4457777777788887 4678999999999999999986653321 22444544331 122
Q ss_pred CCCC---------CHHHHHHHH---HHHhcCCCCCCCCHHHHHHHHH---------HHhcCc---eEEEEecCCCCCCcc
Q 001993 255 SEPF---------DDIRIAKAI---LESLKGSATNAVESETVLKQLR---------ESIEGK---KFFLVLDDVWTEEPQ 310 (985)
Q Consensus 255 s~~~---------~~~~~~~~i---~~~l~~~~~~~~~~~~~~~~l~---------~~l~~k---~~LlVlDdv~~~~~~ 310 (985)
.+.. -+.-....| ++.+.... ......+...+. .+.+|+ +-++|+|.+.+-...
T Consensus 289 G~dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~--~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTph 366 (436)
T COG1875 289 GEDIGFLPGTEEEKMGPWMQAIFDNLEVLFSPN--EPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPH 366 (436)
T ss_pred ccccCcCCCchhhhccchHHHHHhHHHHHhccc--ccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHH
Confidence 2221 011111222 22222211 111112211111 122343 468999999765544
Q ss_pred cHHHHHhhhcCCCCCcEEEEEcCch
Q 001993 311 NWEQLLGCLRCGSKESRILVTTRNE 335 (985)
Q Consensus 311 ~~~~l~~~l~~~~~gs~iivTtR~~ 335 (985)
+ +...+...+.||||+.|--..
T Consensus 367 e---ikTiltR~G~GsKIVl~gd~a 388 (436)
T COG1875 367 E---LKTILTRAGEGSKIVLTGDPA 388 (436)
T ss_pred H---HHHHHHhccCCCEEEEcCCHH
Confidence 3 444455678999999987543
No 312
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.36 E-value=0.022 Score=55.33 Aligned_cols=93 Identities=28% Similarity=0.263 Sum_probs=66.9
Q ss_pred hhcCCCCCCCCCeEEEeeccCCCCCCCChhhhccccccEEeEeccCCC--CcCCCCCCCCccceeeccCCCCceEeCCcc
Q 001993 781 VLECLQPPSSLEKLGIYGYAGDTISPTSDWMLSLAKLRVLTLRFCNEC--ECLPPLGKLPCLETLVLEGMSSVKRLGNGF 858 (985)
Q Consensus 781 ~~~~l~~~~~L~~L~l~~~~~~~~~~~p~~~~~l~~L~~L~L~~~~~~--~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~ 858 (985)
.++.+..++.|..|.+.+|.+..+. |.--..+++|+.|.|.+|+.. .++-++..||.|++|.+-+++ ++.-..
T Consensus 56 ~l~~lp~l~rL~tLll~nNrIt~I~--p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~-- 130 (233)
T KOG1644|consen 56 KLDNLPHLPRLHTLLLNNNRITRID--PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKN-- 130 (233)
T ss_pred hcccCCCccccceEEecCCcceeec--cchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccC--
Confidence 4456677889999999999988874 443446889999999999643 467789999999999998865 332211
Q ss_pred cCCchhhhhhhhhhhcccccccCCCCCccceeecccc
Q 001993 859 LGIAEDHQARADQAETASSIIRDTAFPRLETLEFLDM 895 (985)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~~~~~~~fp~L~~L~l~~~ 895 (985)
+.... .-.+|+|+.|++..-
T Consensus 131 YR~yv-----------------l~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 131 YRLYV-----------------LYKLPSLRTLDFQKV 150 (233)
T ss_pred ceeEE-----------------EEecCcceEeehhhh
Confidence 00000 135899999999764
No 313
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.34 E-value=0.092 Score=57.50 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=41.2
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccC----CceEEEEeCCCCCHHHHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHF----NEKIWVCVSEPFDDIRIAKAILESLK 272 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f----~~~~wv~~s~~~~~~~~~~~i~~~l~ 272 (985)
+...++-|+|.+|+|||++|.+++........+ ..++||+....++...+.+ +++.++
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 356799999999999999999998642221111 3689999988888776654 444443
No 314
>PRK05439 pantothenate kinase; Provisional
Probab=95.31 E-value=0.093 Score=56.30 Aligned_cols=81 Identities=20% Similarity=0.228 Sum_probs=45.3
Q ss_pred CCCCEEEEEEccCCchHHHHHHHHhcchhhhcc--CCceEEEEeCCCCCHHHHHHHHHHHhc-CCCCCCCCHHHHHHHHH
Q 001993 213 TQRPTIISITGMGGIGKTTLAKLIFNDNEVRNH--FNEKIWVCVSEPFDDIRIAKAILESLK-GSATNAVESETVLKQLR 289 (985)
Q Consensus 213 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~~~~~~~~~~~~l~ 289 (985)
...+.+|+|.|.+|+||||+|+.+.. ..... -..+.-++...-+-..+.+..- ..+. ...++..+.+.+...+.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~ 159 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLS 159 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHH
Confidence 35678999999999999999998876 33322 1234444444333222222110 0010 11234556666766666
Q ss_pred HHhcCce
Q 001993 290 ESIEGKK 296 (985)
Q Consensus 290 ~~l~~k~ 296 (985)
....|+.
T Consensus 160 ~Lk~G~~ 166 (311)
T PRK05439 160 DVKSGKP 166 (311)
T ss_pred HHHcCCC
Confidence 6655554
No 315
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.31 E-value=0.048 Score=55.74 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=59.0
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCC---CHHHHHHHHHHH-
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAV---ESETVLKQLRES- 291 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~l~~~- 291 (985)
.+++.|+|+.|.||||+.+.+...... .+ ...|+.+.. .. ...+.++...+.....-.. ....-...+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~--~G~~v~a~~-~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AH--IGSFVPADS-AT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-Hh--CCCeeEcCC-cE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 488999999999999999998742111 11 111221111 00 0111122222221111000 011111122222
Q ss_pred -hcCceEEEEecCCCCCCc-ccHH----HHHhhhcCC-CCCcEEEEEcCchhhHHhhc
Q 001993 292 -IEGKKFFLVLDDVWTEEP-QNWE----QLLGCLRCG-SKESRILVTTRNEKVAIAIG 342 (985)
Q Consensus 292 -l~~k~~LlVlDdv~~~~~-~~~~----~l~~~l~~~-~~gs~iivTtR~~~v~~~~~ 342 (985)
+..++.|++||+...... .+.. .+...+... ..+..+|+||-+.+......
T Consensus 104 ~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 104 RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 246789999999864321 1111 222333222 23457999999988876653
No 316
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.28 E-value=0.066 Score=52.20 Aligned_cols=116 Identities=15% Similarity=0.176 Sum_probs=62.1
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC--CCCHHHHHHHHHHHhcCCCCCCCCHH-HHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE--PFDDIRIAKAILESLKGSATNAVESE-TVLKQLRESIE 293 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~l~~~l~ 293 (985)
.+++|+|..|.|||||.+.++... ......+++.-.. ..+.....+ ..++-. .. .+.. ...-.+.+.+-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~-~q-LS~G~~qrl~laral~ 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMV-YQ-LSVGERQMVEIARALA 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEE-Ee-cCHHHHHHHHHHHHHh
Confidence 589999999999999999998731 2233444443111 111111111 111110 00 2222 22233445666
Q ss_pred CceEEEEecCCCC-CCcccHHHHHhhhcCC-CCCcEEEEEcCchhhHHh
Q 001993 294 GKKFFLVLDDVWT-EEPQNWEQLLGCLRCG-SKESRILVTTRNEKVAIA 340 (985)
Q Consensus 294 ~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~ 340 (985)
.++-++++|+--. -+......+...+... ..|.-||++|.+......
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 7788999999743 2333444455555422 236678888888764433
No 317
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.26 E-value=0.055 Score=59.04 Aligned_cols=103 Identities=15% Similarity=0.183 Sum_probs=56.8
Q ss_pred CCEEEEEEccCCchHHH-HHHHHhcchhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 001993 215 RPTIISITGMGGIGKTT-LAKLIFNDNEVRNHFNEKIWVCVSE-PFDDIRIAKAILESLKGSATNAVESETVLKQLRESI 292 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTt-La~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 292 (985)
+.++|.++|+.|||||| ||+..+.- .....=..+..++... .....+.++.-++-++.+-....+..++...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l- 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL- 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-
Confidence 36899999999999997 55554431 1112223456666432 33455566666666665544455555555554432
Q ss_pred cCceEEEEecCCCCC--CcccHHHHHhhhc
Q 001993 293 EGKKFFLVLDDVWTE--EPQNWEQLLGCLR 320 (985)
Q Consensus 293 ~~k~~LlVlDdv~~~--~~~~~~~l~~~l~ 320 (985)
+.. =+|.+|=+... +....+++..++.
T Consensus 280 ~~~-d~ILVDTaGrs~~D~~~i~el~~~~~ 308 (407)
T COG1419 280 RDC-DVILVDTAGRSQYDKEKIEELKELID 308 (407)
T ss_pred hcC-CEEEEeCCCCCccCHHHHHHHHHHHh
Confidence 333 35556666432 2233444555544
No 318
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.12 Score=62.49 Aligned_cols=124 Identities=21% Similarity=0.291 Sum_probs=74.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++|-++.+..|.+.+.....+.++ ......+.+.|+.|+|||-||+.++. .+-+..+..+-++.++
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~---------~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse-- 629 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKD---------PNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE-- 629 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCC---------CCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh--
Confidence 4777788888888877755421110 12567889999999999999999987 4433334444444333
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceE-EEEecCCCCCCcccHHHHHhhhcCC
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKF-FLVLDDVWTEEPQNWEQLLGCLRCG 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~ 322 (985)
... ..++.+.+.... ..+....+.+.++.++| +|+||||...+.+....+...+..+
T Consensus 630 ----~~e--vskligsp~gyv-G~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 630 ----FQE--VSKLIGSPPGYV-GKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred ----hhh--hhhccCCCcccc-cchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 222 333333322111 11223355666666665 6778999776666666666666644
No 319
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.25 E-value=0.11 Score=51.98 Aligned_cols=45 Identities=20% Similarity=0.236 Sum_probs=30.2
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHH
Q 001993 218 IISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKA 266 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 266 (985)
++.|.|.+|+|||+||.+++...- + .=..++|++... +...+...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~-~-~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL-A-RGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH-H-CCCcEEEEECCC--CHHHHHHH
Confidence 368999999999999999877422 2 224577887654 34444433
No 320
>PTZ00301 uridine kinase; Provisional
Probab=95.22 E-value=0.033 Score=56.48 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=21.1
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999998876
No 321
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.21 E-value=0.093 Score=57.02 Aligned_cols=58 Identities=21% Similarity=0.182 Sum_probs=40.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhc----cCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRN----HFNEKIWVCVSEPFDDIRIAKAILESLK 272 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 272 (985)
+...++.|+|.+|+|||||+..++....... .-..++|++....++... +.++++.++
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~ 155 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYG 155 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcC
Confidence 4568999999999999999998875322211 113578999888777775 344555543
No 322
>PRK15453 phosphoribulokinase; Provisional
Probab=95.19 E-value=0.2 Score=52.48 Aligned_cols=78 Identities=22% Similarity=0.166 Sum_probs=44.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC--CCHHHHHHHHHH--Hhc--CCC--CCCCCHHHHH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP--FDDIRIAKAILE--SLK--GSA--TNAVESETVL 285 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~--~l~--~~~--~~~~~~~~~~ 285 (985)
....+|+|.|.+|+||||+|+.+.+ ..+..=...+.++...- ++....-..+.. .-+ -+. .+..+.+.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~--if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEK--IFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH--HHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 3567999999999999999999885 22211112334443322 233232222211 111 112 4667778888
Q ss_pred HHHHHHhc
Q 001993 286 KQLRESIE 293 (985)
Q Consensus 286 ~~l~~~l~ 293 (985)
+.++.+.+
T Consensus 81 ~~l~~l~~ 88 (290)
T PRK15453 81 QLFREYGE 88 (290)
T ss_pred HHHHHHhc
Confidence 88877665
No 323
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.18 E-value=0.18 Score=56.95 Aligned_cols=91 Identities=16% Similarity=0.177 Sum_probs=47.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC-CCHHHHHHHHHHHhcCCC---CCCCCHHHHHHHHH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP-FDDIRIAKAILESLKGSA---TNAVESETVLKQLR 289 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~ 289 (985)
..+.++.++|.+|+||||.|..++.....+..+ .++-|++... +...+.+....+..+.+. ....+...+.....
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 356899999999999999998888731111222 3344443321 122333444444443321 11223334433333
Q ss_pred HHhcCceE-EEEecCCC
Q 001993 290 ESIEGKKF-FLVLDDVW 305 (985)
Q Consensus 290 ~~l~~k~~-LlVlDdv~ 305 (985)
+....+.+ ++|+|-..
T Consensus 176 ~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 33333444 77777764
No 324
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.17 E-value=0.0038 Score=73.31 Aligned_cols=44 Identities=14% Similarity=0.003 Sum_probs=29.9
Q ss_pred cccccceeecccccCCCCCCC-C-CCCCCcCeEEecCchhhhhhhc
Q 001993 913 MPRLRHLSICWSPELKALPDY-I-LGSTSLDKLLIYYSRHLNNRYN 956 (985)
Q Consensus 913 lp~L~~L~i~~c~~L~~lp~~-~-~~l~~L~~L~i~~c~~l~~~~~ 956 (985)
++.|+.|++..|...+.--.. . ..+..++.+++.+|+.++....
T Consensus 400 ~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 400 SDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred CCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 444899999999766642211 1 1167789999999998776543
No 325
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.17 E-value=0.11 Score=50.37 Aligned_cols=117 Identities=15% Similarity=0.153 Sum_probs=64.7
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceE--EEEeCCCCCHHHHHHHHHHHhc----CCC--CCCCCH-------
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKI--WVCVSEPFDDIRIAKAILESLK----GSA--TNAVES------- 281 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~--wv~~s~~~~~~~~~~~i~~~l~----~~~--~~~~~~------- 281 (985)
..|-|++..|.||||.|..++-.. ....+...+ |+.-.........+..+ .+. +.. ....+.
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra-~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRA-LGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH-HHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHHH
Confidence 578888889999999998887631 222233211 33333233444444443 111 010 001111
Q ss_pred HHHHHHHHHHhcC-ceEEEEecCCC---CCCcccHHHHHhhhcCCCCCcEEEEEcCchh
Q 001993 282 ETVLKQLRESIEG-KKFFLVLDDVW---TEEPQNWEQLLGCLRCGSKESRILVTTRNEK 336 (985)
Q Consensus 282 ~~~~~~l~~~l~~-k~~LlVlDdv~---~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 336 (985)
.+.....++.+.. .-=|||||.+- +...-..+++...+.....+..||+|-|+..
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 1122233344443 44599999983 1223345677777777777889999999863
No 326
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.15 E-value=0.15 Score=52.77 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=32.4
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAI 267 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 267 (985)
...++.|.|.+|.||||+|.+++... .+.. ..+++++.. .+..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCC--CCHHHHHHHH
Confidence 34599999999999999987776532 1222 345666633 3455666655
No 327
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.15 E-value=0.026 Score=53.73 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=27.9
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEE
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVC 253 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~ 253 (985)
..+|.|+|.+|+||||||+.+.. +....-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEec
Confidence 36899999999999999999998 5555555566664
No 328
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.15 E-value=0.15 Score=61.50 Aligned_cols=166 Identities=20% Similarity=0.222 Sum_probs=82.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
++.|.+...+++.+.+....++.... . ....-.+-|.|+|++|.|||++|+.++. +....| +.++.++
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~----~-~~~~~~~gill~G~~G~GKt~~~~~~a~--~~~~~f---~~is~~~-- 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQ----K-LGGKIPKGVLMVGPPGTGKTLLAKAIAG--EAKVPF---FTISGSD-- 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHH----h-cCCCCCCcEEEECCCCCCHHHHHHHHHH--HcCCCE---EEEehHH--
Confidence 56777766666655443211100000 0 0011233499999999999999999987 333222 2222221
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC----------cccHHH----HHhhhcC--C
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE----------PQNWEQ----LLGCLRC--G 322 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~----l~~~l~~--~ 322 (985)
+ .....+ .....+...+.......+++|++|+++... ...+.. ++..+.. .
T Consensus 221 ----~----~~~~~g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~ 287 (644)
T PRK10733 221 ----F----VEMFVG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG 287 (644)
T ss_pred ----h----HHhhhc-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC
Confidence 1 111111 112233333333444578999999985421 112222 2222221 1
Q ss_pred CCCcEEEEEcCchhhHH-hhc-Ccc-cccccCCCCChHHHHHHHHHHhcC
Q 001993 323 SKESRILVTTRNEKVAI-AIG-TTK-FNIIPIELLSDEDCWSIFSQLALS 369 (985)
Q Consensus 323 ~~gs~iivTtR~~~v~~-~~~-~~~-~~~~~l~~L~~~e~~~Lf~~~~~~ 369 (985)
..+.-||.||..++... .+. ... ...+.+...+.++-.++++.+...
T Consensus 288 ~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 288 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred CCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 23445555777655322 211 111 146677777888888888776643
No 329
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.14 E-value=0.11 Score=51.08 Aligned_cols=118 Identities=17% Similarity=0.198 Sum_probs=60.9
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC--CCCHHHHHHHHHHHhcC--CCCCC---------CCHH
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE--PFDDIRIAKAILESLKG--SATNA---------VESE 282 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~~--~~~~~---------~~~~ 282 (985)
-.+++|+|..|.|||||.+.++.-. ......+++.-.. ....... ...++- ..... .+..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 3589999999999999999998731 1223333332110 0011111 011110 00000 1111
Q ss_pred H-HHHHHHHHhcCceEEEEecCCCC-CCcccHHHHHhhhcCCCCCcEEEEEcCchhhHHh
Q 001993 283 T-VLKQLRESIEGKKFFLVLDDVWT-EEPQNWEQLLGCLRCGSKESRILVTTRNEKVAIA 340 (985)
Q Consensus 283 ~-~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 340 (985)
+ ..-.+.+.+-.++-++++|+-.. -+......+...+.....+..||++|.+......
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 1 11224455667788999999743 2333344455544433335678888888776543
No 330
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.14 E-value=0.1 Score=55.40 Aligned_cols=90 Identities=14% Similarity=0.265 Sum_probs=49.5
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCH--HHHHHHHHHHhcCCC---CCCCCHHH-HHHH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDD--IRIAKAILESLKGSA---TNAVESET-VLKQ 287 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~---~~~~~~~~-~~~~ 287 (985)
...+++.++|++|+||||.+..++.. ....-..+.++... .+.. .+.+....+..+... ....+... ....
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~--l~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK--LKKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 45689999999999999999998863 33332345556543 2322 233344444443221 11122222 2333
Q ss_pred HHHHhcCceEEEEecCCCC
Q 001993 288 LRESIEGKKFFLVLDDVWT 306 (985)
Q Consensus 288 l~~~l~~k~~LlVlDdv~~ 306 (985)
+.....+..=++++|-.-.
T Consensus 147 l~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHHCCCCEEEEeCCCC
Confidence 4433334455788888743
No 331
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.14 E-value=0.23 Score=50.40 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=36.9
Q ss_pred HHHHHhcCceEEEEecCCC-CCCcccHHHHHhhhcC--CCCCcEEEEEcCchhhHHhhc
Q 001993 287 QLRESIEGKKFFLVLDDVW-TEEPQNWEQLLGCLRC--GSKESRILVTTRNEKVAIAIG 342 (985)
Q Consensus 287 ~l~~~l~~k~~LlVlDdv~-~~~~~~~~~l~~~l~~--~~~gs~iivTtR~~~v~~~~~ 342 (985)
.+.+.|-..+-+|+-|+=- .-+...-+.+...+.. ...|.-||+.|-++.++..++
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 4567777888889988742 2223333444444442 244778999999999998764
No 332
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.14 E-value=0.1 Score=59.07 Aligned_cols=103 Identities=12% Similarity=0.135 Sum_probs=53.8
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF-DDIRIAKAILESLKGSATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 294 (985)
.+++.++|++|+||||++..++........-..+..|+....- ...+.+....+.++.......+.+++...+.+ +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC-
Confidence 4699999999999999998887632211222345666653321 11222333333333332223334455554543 23
Q ss_pred ceEEEEecCCCCCC--cccHHHHHhhhc
Q 001993 295 KKFFLVLDDVWTEE--PQNWEQLLGCLR 320 (985)
Q Consensus 295 k~~LlVlDdv~~~~--~~~~~~l~~~l~ 320 (985)
..=+||+|...... ....+.+...+.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 35688899764322 223334544444
No 333
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.10 E-value=0.2 Score=51.22 Aligned_cols=209 Identities=15% Similarity=0.182 Sum_probs=114.9
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcch----hhhccCCceEEEEe
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDN----EVRNHFNEKIWVCV 254 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----~~~~~f~~~~wv~~ 254 (985)
.+.++++..+++..... .++.+-+.++|+.|.||-|.+..+.+.- -.+-.-+...|.+-
T Consensus 14 ~l~~~~e~~~~Lksl~~-----------------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tp 76 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSS-----------------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTP 76 (351)
T ss_pred hcccHHHHHHHHHHhcc-----------------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecC
Confidence 35566666666666554 2456778999999999999887665531 11122233444432
Q ss_pred CCC----------C-----------CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceE-EEEecCCCCCCcccH
Q 001993 255 SEP----------F-----------DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKF-FLVLDDVWTEEPQNW 312 (985)
Q Consensus 255 s~~----------~-----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~ 312 (985)
+.. + ..+.+.++++++.+....-. .-..+.| ++|+-.++.-..+..
T Consensus 77 S~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie------------~~~qr~fKvvvi~ead~LT~dAQ 144 (351)
T KOG2035|consen 77 SKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIE------------TQGQRPFKVVVINEADELTRDAQ 144 (351)
T ss_pred CCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchh------------hccccceEEEEEechHhhhHHHH
Confidence 221 1 12334444444443221100 0012344 555666644344445
Q ss_pred HHHHhhhcCCCCCcEEEEEcCch--hhHHhhcCcccccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHh
Q 001993 313 EQLLGCLRCGSKESRILVTTRNE--KVAIAIGTTKFNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSK 390 (985)
Q Consensus 313 ~~l~~~l~~~~~gs~iivTtR~~--~v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~ 390 (985)
..++.....-.+.+|+|+..-+. -+...-.-. -.+++...+++|....+.+.+-..+. ..+ ++++++|+++
T Consensus 145 ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRC--l~iRvpaps~eeI~~vl~~v~~kE~l--~lp---~~~l~rIa~k 217 (351)
T KOG2035|consen 145 HALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRC--LFIRVPAPSDEEITSVLSKVLKKEGL--QLP---KELLKRIAEK 217 (351)
T ss_pred HHHHHHHHHHhcCceEEEEecCcccchhHHhhhe--eEEeCCCCCHHHHHHHHHHHHHHhcc--cCc---HHHHHHHHHH
Confidence 55666555555667877764432 222221111 46889999999999999887755443 222 5789999999
Q ss_pred cCCChh-HHHHHHhhhhcCC----------ChHHHHHHHHhhhhh
Q 001993 391 CKGLPL-AVKTLGSLLRFKG----------KIEEWQRVLENELWE 424 (985)
Q Consensus 391 c~GlPL-ai~~~~~~L~~~~----------~~~~w~~~~~~~~~~ 424 (985)
++|.-- ||-++ ..++-+. ...+|...+.+....
T Consensus 218 S~~nLRrAllml-E~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 218 SNRNLRRALLML-EAVRVNNEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred hcccHHHHHHHH-HHHHhccccccccCCCCCCccHHHHHHHHHHH
Confidence 988653 44333 2222110 246888877664443
No 334
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.04 E-value=0.18 Score=49.70 Aligned_cols=102 Identities=16% Similarity=0.114 Sum_probs=56.6
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEE------eCCCCCHHHHHHHHHHHhcCCCCCCCCHH-HHHHHHH
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVC------VSEPFDDIRIAKAILESLKGSATNAVESE-TVLKQLR 289 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~------~s~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~l~ 289 (985)
.+++|+|..|.|||||++.+..-. ......+++. +.+... .+.. ...-.+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~-------------------LSgGq~qrv~la 83 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID-------------------LSGGELQRVAIA 83 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC-------------------CCHHHHHHHHHH
Confidence 599999999999999999998731 1222333221 111111 1111 2222344
Q ss_pred HHhcCceEEEEecCCCC-CCcccHHHHHhhhcCC-CC-CcEEEEEcCchhhHHh
Q 001993 290 ESIEGKKFFLVLDDVWT-EEPQNWEQLLGCLRCG-SK-ESRILVTTRNEKVAIA 340 (985)
Q Consensus 290 ~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~iivTtR~~~v~~~ 340 (985)
+.+..++-++++|+--. -+......+...+... .. +.-||++|.+......
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 55667788999998743 2223333344444321 12 2567888887765543
No 335
>PTZ00035 Rad51 protein; Provisional
Probab=95.03 E-value=0.15 Score=55.83 Aligned_cols=58 Identities=17% Similarity=0.196 Sum_probs=39.8
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhh----ccCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVR----NHFNEKIWVCVSEPFDDIRIAKAILESLK 272 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 272 (985)
+.-.++.|+|.+|+|||||+..++-..+.. ..=..++|++....++.+. +.++++.++
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g 177 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFG 177 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhC
Confidence 456899999999999999999887532221 1123467998877777766 344455543
No 336
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.01 E-value=0.0012 Score=66.72 Aligned_cols=34 Identities=29% Similarity=0.415 Sum_probs=16.8
Q ss_pred ccccccEEeEeccCCCCcCCCCCCCCccceeeccC
Q 001993 813 SLAKLRVLTLRFCNECECLPPLGKLPCLETLVLEG 847 (985)
Q Consensus 813 ~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~ 847 (985)
.++.|+.|.|+-| .++.+.++..|.+|+.|+|+.
T Consensus 39 kMp~lEVLsLSvN-kIssL~pl~rCtrLkElYLRk 72 (388)
T KOG2123|consen 39 KMPLLEVLSLSVN-KISSLAPLQRCTRLKELYLRK 72 (388)
T ss_pred hcccceeEEeecc-ccccchhHHHHHHHHHHHHHh
Confidence 4445555555554 334444455555555555544
No 337
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.028 Score=64.42 Aligned_cols=73 Identities=26% Similarity=0.231 Sum_probs=47.0
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC--CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF--DDIRIAKAILESLKGSATNAVESETVLKQLRESI 292 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 292 (985)
...-|.|.|..|+|||+||+++++... +...-.+.+|+++.-. ..+.+++ .+...+.+.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk-----------------~l~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQK-----------------FLNNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHH-----------------HHHHHHHHHH
Confidence 345789999999999999999998432 4444456666665411 1111111 1222334555
Q ss_pred cCceEEEEecCCC
Q 001993 293 EGKKFFLVLDDVW 305 (985)
Q Consensus 293 ~~k~~LlVlDdv~ 305 (985)
...+-++||||++
T Consensus 492 ~~~PSiIvLDdld 504 (952)
T KOG0735|consen 492 WYAPSIIVLDDLD 504 (952)
T ss_pred hhCCcEEEEcchh
Confidence 6789999999984
No 338
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.98 E-value=0.049 Score=60.08 Aligned_cols=112 Identities=15% Similarity=0.186 Sum_probs=67.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++|+++....+...+..+. -+.+.|.+|+|||+||+.++. .... ..++|.+....
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~-------------------~vll~G~PG~gKT~la~~lA~--~l~~---~~~~i~~t~~l 80 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG-------------------HVLLEGPPGVGKTLLARALAR--ALGL---PFVRIQCTPDL 80 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC-------------------CEEEECCCCccHHHHHHHHHH--HhCC---CeEEEecCCCC
Confidence 58898888888877777443 589999999999999999997 3332 34556666666
Q ss_pred CHHHHHHHHHHHhcC--CCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcC
Q 001993 259 DDIRIAKAILESLKG--SATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRC 321 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~--~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~ 321 (985)
...++.-...-.... .........-+ +..-+.++++|.++.........+...+..
T Consensus 81 ~p~d~~G~~~~~~~~~~~~~~~~~~gpl-------~~~~~~ill~DEInra~p~~q~aLl~~l~e 138 (329)
T COG0714 81 LPSDLLGTYAYAALLLEPGEFRFVPGPL-------FAAVRVILLLDEINRAPPEVQNALLEALEE 138 (329)
T ss_pred CHHHhcCchhHhhhhccCCeEEEecCCc-------ccccceEEEEeccccCCHHHHHHHHHHHhC
Confidence 555543332222110 00000000000 011116999999988776666666666653
No 339
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.97 E-value=0.11 Score=51.29 Aligned_cols=119 Identities=18% Similarity=0.178 Sum_probs=61.4
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhc---CCC--CCC--------CCHH
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLK---GSA--TNA--------VESE 282 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~---~~~--~~~--------~~~~ 282 (985)
-.+++|+|..|.|||||++.++... ......+++.-....+.. ..+...++ ... ... .+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 3589999999999999999998732 122333333211000000 01111111 000 000 1112
Q ss_pred H-HHHHHHHHhcCceEEEEecCCCC-CCcccHHHHHhhhcCC-CCCcEEEEEcCchhhHHh
Q 001993 283 T-VLKQLRESIEGKKFFLVLDDVWT-EEPQNWEQLLGCLRCG-SKESRILVTTRNEKVAIA 340 (985)
Q Consensus 283 ~-~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~ 340 (985)
+ ..-.+...+..++=++++|+--. -+......+...+... ..|.-||++|.+......
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 2 12235566677888999999743 2233334444444322 236678999888775553
No 340
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.95 E-value=0.015 Score=54.10 Aligned_cols=21 Identities=48% Similarity=0.694 Sum_probs=19.3
Q ss_pred EEEEccCCchHHHHHHHHhcc
Q 001993 219 ISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 219 v~I~G~gGiGKTtLa~~v~~~ 239 (985)
|+|.|.+|+||||+|+++...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999873
No 341
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.94 E-value=0.04 Score=58.16 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=18.3
Q ss_pred EEEEEEccCCchHHHHHHHHhcc
Q 001993 217 TIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
+.|.|+|.||+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 36899999999999999999873
No 342
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.93 E-value=0.17 Score=52.94 Aligned_cols=21 Identities=24% Similarity=0.456 Sum_probs=19.0
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+..|+|++|+|||+||..++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 568999999999999999876
No 343
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.93 E-value=0.014 Score=52.87 Aligned_cols=28 Identities=36% Similarity=0.596 Sum_probs=19.2
Q ss_pred EEEEccCCchHHHHHHHHhcchhhhccCCc
Q 001993 219 ISITGMGGIGKTTLAKLIFNDNEVRNHFNE 248 (985)
Q Consensus 219 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~ 248 (985)
|.|+|.+|+||||+|+.++. .+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 67999999999999999998 56666643
No 344
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.91 E-value=0.079 Score=60.33 Aligned_cols=90 Identities=17% Similarity=0.169 Sum_probs=47.3
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE-PFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
...+++|+|.+|+||||++..++.....+.....+..++... .......+....+.++.......+...+...+.+ +.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-LR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-hc
Confidence 457999999999999999998886321111123345554422 1122233333333332222222333444444433 33
Q ss_pred CceEEEEecCCCC
Q 001993 294 GKKFFLVLDDVWT 306 (985)
Q Consensus 294 ~k~~LlVlDdv~~ 306 (985)
..=+||+|....
T Consensus 428 -~~DLVLIDTaG~ 439 (559)
T PRK12727 428 -DYKLVLIDTAGM 439 (559)
T ss_pred -cCCEEEecCCCc
Confidence 345888888753
No 345
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.89 E-value=0.076 Score=54.63 Aligned_cols=122 Identities=20% Similarity=0.225 Sum_probs=68.4
Q ss_pred EEEEEEccCCchHHHHHHHHhcchh-----hh------ccC---CceEEEEeCCCC------CH----------------
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNE-----VR------NHF---NEKIWVCVSEPF------DD---------------- 260 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~-----~~------~~f---~~~~wv~~s~~~------~~---------------- 260 (985)
.+++|+|+.|.|||||.+.+..-.+ +. ..+ ..+.||.=...+ ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6999999999999999999976210 00 001 134455321110 11
Q ss_pred ------HHHHHHHHHHhcCCC-----CCCCCHHHHHHH-HHHHhcCceEEEEecCCCC-CC---cccHHHHHhhhcCCCC
Q 001993 261 ------IRIAKAILESLKGSA-----TNAVESETVLKQ-LRESIEGKKFFLVLDDVWT-EE---PQNWEQLLGCLRCGSK 324 (985)
Q Consensus 261 ------~~~~~~i~~~l~~~~-----~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~-~~---~~~~~~l~~~l~~~~~ 324 (985)
.+.....+++++... ...-+-.+.+.. +.+.|..++=|+|||.--. .| ....-++...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 234445555554432 122333444433 5577888999999998422 12 22333344444433
Q ss_pred CcEEEEEcCchhhHHh
Q 001993 325 ESRILVTTRNEKVAIA 340 (985)
Q Consensus 325 gs~iivTtR~~~v~~~ 340 (985)
|.-||++|-+-.....
T Consensus 189 g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 189 GKTVLMVTHDLGLVMA 204 (254)
T ss_pred CCEEEEEeCCcHHhHh
Confidence 7789999988664433
No 346
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.71 Score=46.32 Aligned_cols=162 Identities=15% Similarity=0.216 Sum_probs=85.7
Q ss_pred Cceec-chhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC
Q 001993 178 YEIRG-RNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE 256 (985)
Q Consensus 178 ~~~vG-r~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 256 (985)
++.+| .+..+++|.+.+.-+.. ++..... -+-.+++-|.++|++|.|||-||+.|+++ .++.|+.||.
T Consensus 146 YeMiGgLd~QIkeIkEVIeLPvK-HPELF~a---LGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsg 214 (404)
T KOG0728|consen 146 YEMIGGLDKQIKEIKEVIELPVK-HPELFEA---LGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSG 214 (404)
T ss_pred HHHhccHHHHHHHHHHHHhcccc-CHHHHHh---cCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEech
Confidence 34555 47777777666542220 0000000 01356778999999999999999999972 3456677765
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh----cCceEEEEecCCCCC-----------CcccHHHHHhhh--
Q 001993 257 PFDDIRIAKAILESLKGSATNAVESETVLKQLRESI----EGKKFFLVLDDVWTE-----------EPQNWEQLLGCL-- 319 (985)
Q Consensus 257 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l-- 319 (985)
.. +.+..+ +. -...+++.+ ..-+.++++|.+++. +.+....++..+
T Consensus 215 se----lvqk~i----ge---------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnq 277 (404)
T KOG0728|consen 215 SE----LVQKYI----GE---------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQ 277 (404)
T ss_pred HH----HHHHHh----hh---------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHh
Confidence 31 111111 11 111222222 346788898888541 112222233332
Q ss_pred -c--CCCCCcEEEEEcCchhhHHh-h-cCc-ccccccCCCCChHHHHHHHHHHh
Q 001993 320 -R--CGSKESRILVTTRNEKVAIA-I-GTT-KFNIIPIELLSDEDCWSIFSQLA 367 (985)
Q Consensus 320 -~--~~~~gs~iivTtR~~~v~~~-~-~~~-~~~~~~l~~L~~~e~~~Lf~~~~ 367 (985)
. ...+.-+||..|..-++... + .+. -...++..+-+++.-.++++-+.
T Consensus 278 ldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 278 LDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 2 12456688887766554332 1 111 11456777777776667776543
No 347
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=94.82 E-value=0.82 Score=48.67 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=48.8
Q ss_pred cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchh-hHHhhcCcccccccCCCCChHHHHHHHHH
Q 001993 293 EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEK-VAIAIGTTKFNIIPIELLSDEDCWSIFSQ 365 (985)
Q Consensus 293 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~~l~~L~~~e~~~Lf~~ 365 (985)
.+++-++|+|+++.......+.++..+.....++.+|++|.+.+ +...+.. ....+++.+ +.++..+.+..
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~S-Rcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKS-RTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHH-cceeeeCCC-cHHHHHHHHHH
Confidence 35667999999988888889999999987777777777776543 3322211 125677766 66666666653
No 348
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.79 E-value=0.019 Score=46.68 Aligned_cols=21 Identities=52% Similarity=0.705 Sum_probs=19.3
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+++|.|.+|+||||+|+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 349
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.78 E-value=0.14 Score=50.64 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=22.2
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
...+++|+|++|+||||+|+.++..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999973
No 350
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.78 E-value=0.26 Score=48.10 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=20.0
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+.|.++|.+|+||||+|++++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak 23 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAK 23 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 3678999999999999999987
No 351
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.77 E-value=0.087 Score=56.08 Aligned_cols=80 Identities=20% Similarity=0.201 Sum_probs=42.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccC--CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHF--NEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRES 291 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 291 (985)
..+.+|+|.|..|+||||+|+.+.. ...... ..+..++...-..........-..-........+.+.+...+...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~L 137 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDL 137 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHH
Confidence 4678999999999999999987765 222111 124445444333222222211000001123445666666666655
Q ss_pred hcCc
Q 001993 292 IEGK 295 (985)
Q Consensus 292 l~~k 295 (985)
..++
T Consensus 138 k~g~ 141 (290)
T TIGR00554 138 KSGK 141 (290)
T ss_pred HCCC
Confidence 5444
No 352
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.76 E-value=0.18 Score=55.95 Aligned_cols=82 Identities=24% Similarity=0.297 Sum_probs=47.8
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHHH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSAT-----NAVESETVLKQLR 289 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 289 (985)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++..+. ...+ ..-++.++.... ...+.+++.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 4579999999999999999999873 3223346778875432 3332 222344432211 1223344433332
Q ss_pred HHhcCceEEEEecCC
Q 001993 290 ESIEGKKFFLVLDDV 304 (985)
Q Consensus 290 ~~l~~k~~LlVlDdv 304 (985)
+.+.-+||+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235667888887
No 353
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.75 E-value=0.12 Score=60.73 Aligned_cols=131 Identities=18% Similarity=0.214 Sum_probs=75.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++|+...++++.+.+.... ....-|.|+|..|+|||++|+.+.+... ..-...+.|++..-.
T Consensus 188 ~iig~s~~~~~~~~~i~~~a---------------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~ 250 (509)
T PRK05022 188 EMIGQSPAMQQLKKEIEVVA---------------ASDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALP 250 (509)
T ss_pred ceeecCHHHHHHHHHHHHHh---------------CCCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCC
Confidence 79999999999998887543 2335689999999999999999987321 111133445555432
Q ss_pred CHHHHHHHHHHHhcCCCCCC---CCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC-----------C
Q 001993 259 DDIRIAKAILESLKGSATNA---VESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------K 324 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~ 324 (985)
+ ..+. ..+.+..... ...+. ...+. ....=-|+||+|..........+...+..+. .
T Consensus 251 ~--~~~e---~~lfG~~~g~~~ga~~~~-~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 321 (509)
T PRK05022 251 E--SLAE---SELFGHVKGAFTGAISNR-SGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRV 321 (509)
T ss_pred h--HHHH---HHhcCccccccCCCcccC-Ccchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceec
Confidence 2 2221 1222211110 00000 00011 1122346899998777777777877765332 1
Q ss_pred CcEEEEEcCch
Q 001993 325 ESRILVTTRNE 335 (985)
Q Consensus 325 gs~iivTtR~~ 335 (985)
..|||.||...
T Consensus 322 ~~RiI~~t~~~ 332 (509)
T PRK05022 322 DVRVIAATNRD 332 (509)
T ss_pred ceEEEEecCCC
Confidence 45888888643
No 354
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=0.23 Score=58.21 Aligned_cols=136 Identities=19% Similarity=0.161 Sum_probs=76.9
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
...+.+.++|++|.|||.||+++++ ..+.+|-. +... .++.. .-......+...+....+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~-----v~~~--------~l~sk-----~vGesek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFIS-----VKGS--------ELLSK-----WVGESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEE-----eeCH--------HHhcc-----ccchHHHHHHHHHHHHHc
Confidence 4556899999999999999999998 34444422 2110 11111 111122333444444556
Q ss_pred CceEEEEecCCCC-----CC--c----ccHHHHHhhhc--CCCCCcEEEEEcCchhhHH-hhcC--cccccccCCCCChH
Q 001993 294 GKKFFLVLDDVWT-----EE--P----QNWEQLLGCLR--CGSKESRILVTTRNEKVAI-AIGT--TKFNIIPIELLSDE 357 (985)
Q Consensus 294 ~k~~LlVlDdv~~-----~~--~----~~~~~l~~~l~--~~~~gs~iivTtR~~~v~~-~~~~--~~~~~~~l~~L~~~ 357 (985)
..++.|++|+++. .. . ....+++..+. ....+..||-||-.+.... .+-- .-...+.+.+-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 7899999999843 11 0 22333444443 2233434555555443322 1111 11257888888999
Q ss_pred HHHHHHHHHhcC
Q 001993 358 DCWSIFSQLALS 369 (985)
Q Consensus 358 e~~~Lf~~~~~~ 369 (985)
+..+.|+.+...
T Consensus 414 ~r~~i~~~~~~~ 425 (494)
T COG0464 414 ERLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHHhcc
Confidence 999999988753
No 355
>PRK06547 hypothetical protein; Provisional
Probab=94.71 E-value=0.039 Score=54.10 Aligned_cols=25 Identities=36% Similarity=0.383 Sum_probs=22.8
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....+|+|.|++|+||||+|+.+..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999987
No 356
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.70 E-value=0.015 Score=34.97 Aligned_cols=21 Identities=29% Similarity=0.657 Sum_probs=11.9
Q ss_pred CCCeEecCCCCCccccchhhcC
Q 001993 626 HLRYLALGENPWIKELPEALCE 647 (985)
Q Consensus 626 ~Lr~L~L~~~~~i~~lP~~i~~ 647 (985)
+|++|+|++|. ++.+|+++++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 35666666664 5566655443
No 357
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.082 Score=55.06 Aligned_cols=79 Identities=16% Similarity=0.343 Sum_probs=47.0
Q ss_pred EEEEEEccCCchHHHHHHHHhcchh--hhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNE--VRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~--~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 294 (985)
++|.++|++|.|||+|.+.+++.-. ..+.|....-+.++.+ .+.+..... ...-...+.+++.+.+.+
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh--------sLFSKWFsE--SgKlV~kmF~kI~ELv~d 247 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH--------SLFSKWFSE--SGKLVAKMFQKIQELVED 247 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh--------HHHHHHHhh--hhhHHHHHHHHHHHHHhC
Confidence 7899999999999999999998633 3455655555554332 111111111 111234455556666654
Q ss_pred c--eEEEEecCCC
Q 001993 295 K--KFFLVLDDVW 305 (985)
Q Consensus 295 k--~~LlVlDdv~ 305 (985)
+ =+.+.+|.|.
T Consensus 248 ~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 248 RGNLVFVLIDEVE 260 (423)
T ss_pred CCcEEEEEeHHHH
Confidence 4 3556688883
No 358
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.69 E-value=0.14 Score=50.45 Aligned_cols=120 Identities=17% Similarity=0.179 Sum_probs=59.2
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC--CCCHHHHHHHHHHHhcCCCC-CC-------CCHHH-H
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE--PFDDIRIAKAILESLKGSAT-NA-------VESET-V 284 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~-~~-------~~~~~-~ 284 (985)
-.+++|+|..|.|||||.+.++.-. ......+++.-.. ..........+. .+..... -. .+..+ .
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~i~-~~~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNELGDHVG-YLPQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc---CCCCCeEEECCEEcccCCHHHHHhheE-EECCCCccccCcHHHHCcCHHHHH
Confidence 3589999999999999999998631 1222333332100 011111111100 0000000 00 11111 1
Q ss_pred HHHHHHHhcCceEEEEecCCCC-CCcccHHHHHhhhcCC-CCCcEEEEEcCchhhHH
Q 001993 285 LKQLRESIEGKKFFLVLDDVWT-EEPQNWEQLLGCLRCG-SKESRILVTTRNEKVAI 339 (985)
Q Consensus 285 ~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 339 (985)
.-.+.+.+-.++-++++|+-.. -+......+...+... ..|.-||++|.+.....
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 2224455566777899999743 2233334444444321 23667888888876654
No 359
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.68 E-value=1.2 Score=47.98 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=38.7
Q ss_pred eecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCC
Q 001993 180 IRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFD 259 (985)
Q Consensus 180 ~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~ 259 (985)
++=..+....+..++... +-|.|.|.+|+||||+|+.++. ..... .+.|..+...+
T Consensus 47 y~f~~~~~~~vl~~l~~~-------------------~~ilL~G~pGtGKTtla~~lA~--~l~~~---~~rV~~~~~l~ 102 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD-------------------RRVMVQGYHGTGKSTHIEQIAA--RLNWP---CVRVNLDSHVS 102 (327)
T ss_pred ccCCHHHHHHHHHHHhcC-------------------CcEEEEeCCCChHHHHHHHHHH--HHCCC---eEEEEecCCCC
Confidence 444444556677777522 3589999999999999999997 34322 23455555544
Q ss_pred HHHH
Q 001993 260 DIRI 263 (985)
Q Consensus 260 ~~~~ 263 (985)
..++
T Consensus 103 ~~Dl 106 (327)
T TIGR01650 103 RIDL 106 (327)
T ss_pred hhhc
Confidence 4333
No 360
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.66 E-value=0.091 Score=53.19 Aligned_cols=121 Identities=19% Similarity=0.201 Sum_probs=61.1
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHH---HHHHHh
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLK---QLRESI 292 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~---~l~~~l 292 (985)
..++.|+|+.|.||||+.+.+.... +-.+ ...+|.+.. ..-.+...|...+............... .+...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~--~G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQ--IGCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHH--cCCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 3789999999999999999886531 1111 111222111 0112223333333222111111111111 122222
Q ss_pred --cCceEEEEecCCCCCC-ccc----HHHHHhhhcCCCCCcEEEEEcCchhhHHhhcC
Q 001993 293 --EGKKFFLVLDDVWTEE-PQN----WEQLLGCLRCGSKESRILVTTRNEKVAIAIGT 343 (985)
Q Consensus 293 --~~k~~LlVlDdv~~~~-~~~----~~~l~~~l~~~~~gs~iivTtR~~~v~~~~~~ 343 (985)
..++-|+++|+....- ..+ ...+...+.. .|..+|+||-+.+++..+..
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 3568899999984321 111 1223333332 37789999999998876543
No 361
>PRK04328 hypothetical protein; Provisional
Probab=94.65 E-value=0.14 Score=53.92 Aligned_cols=41 Identities=15% Similarity=0.292 Sum_probs=31.2
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE 256 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 256 (985)
+.-.++.|.|.+|.|||+||.++... ....-..++|++..+
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee 61 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEE 61 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeC
Confidence 35679999999999999999998763 222335678888766
No 362
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.61 E-value=0.045 Score=53.87 Aligned_cols=22 Identities=45% Similarity=0.511 Sum_probs=20.1
Q ss_pred EEEEEccCCchHHHHHHHHhcc
Q 001993 218 IISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999984
No 363
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.61 E-value=0.024 Score=53.92 Aligned_cols=21 Identities=43% Similarity=0.591 Sum_probs=19.4
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999885
No 364
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.61 E-value=0.029 Score=57.43 Aligned_cols=25 Identities=48% Similarity=0.804 Sum_probs=22.9
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+..+|+|+|.+|+||||||+.++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999987
No 365
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.59 E-value=0.19 Score=53.15 Aligned_cols=117 Identities=16% Similarity=0.112 Sum_probs=61.2
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-------CCCCHHHHHHH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSAT-------NAVESETVLKQ 287 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------~~~~~~~~~~~ 287 (985)
+..-++|+|..|.|||||.+.++.. +. .....+++.-.+ ....+...++......-.. +..+.......
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~--~~-~~~G~i~~~g~~-v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~ 185 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARI--LS-TGISQLGLRGKK-VGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEG 185 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCc--cC-CCCceEEECCEE-eecchhHHHHHHHhcccccccccccccccccchHHHH
Confidence 4568999999999999999999973 22 223334432100 0000111223222221110 10110011112
Q ss_pred HHHHhc-CceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchhhHHh
Q 001993 288 LRESIE-GKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEKVAIA 340 (985)
Q Consensus 288 l~~~l~-~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 340 (985)
+...+. ..+-++++|.+-. .+.+..+...+. .|..||+||-+..+...
T Consensus 186 ~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred HHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 333332 5788999999843 344555555543 47789999987666443
No 366
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.57 E-value=0.13 Score=50.96 Aligned_cols=121 Identities=15% Similarity=0.121 Sum_probs=59.3
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhc---CCC--CCC----------CC
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLK---GSA--TNA----------VE 280 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~---~~~--~~~----------~~ 280 (985)
-.+++|+|..|.|||||++.++... ......+.+.-........-.....+.+. ... ... .+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~---~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS 102 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE---EPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLS 102 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCC
Confidence 3599999999999999999998631 12223333311000000000000111111 000 000 11
Q ss_pred HHH-HHHHHHHHhcCceEEEEecCCCC-CCcccHHHHHhhhcCC-CC-CcEEEEEcCchhhHH
Q 001993 281 SET-VLKQLRESIEGKKFFLVLDDVWT-EEPQNWEQLLGCLRCG-SK-ESRILVTTRNEKVAI 339 (985)
Q Consensus 281 ~~~-~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~iivTtR~~~v~~ 339 (985)
..+ ..-.+...+..++=++++|+--. .+......+...+... .. |.-||++|.+.....
T Consensus 103 ~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~ 165 (178)
T cd03229 103 GGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAA 165 (178)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 112 12224455667888999998643 2333444455544422 22 566888888766544
No 367
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=94.57 E-value=0.48 Score=55.27 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=37.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcc
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
+++|....++++.+.+..-. ....-|.|+|..|+||+++|+.+++.
T Consensus 220 ~iiG~S~~m~~~~~~i~~~A---------------~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 220 DLLGQSPQMEQVRQTILLYA---------------RSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred heeeCCHHHHHHHHHHHHHh---------------CCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999888876432 22356899999999999999999873
No 368
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.55 E-value=0.065 Score=54.38 Aligned_cols=85 Identities=19% Similarity=0.271 Sum_probs=51.3
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCCCCHHH----
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF-DDIRIAKAILESLKGS-------ATNAVESET---- 283 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 283 (985)
-..++|.|.+|+|||+|+..+.+.. .-+.++++.+.+.. ...++.+.+...-... ..+.....+
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 3578999999999999999998843 12344777777653 4455555554331111 111111111
Q ss_pred -HHHHHHHHh--cCceEEEEecCC
Q 001993 284 -VLKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 284 -~~~~l~~~l--~~k~~LlVlDdv 304 (985)
..-.+.+++ +++.+|+++||+
T Consensus 91 ~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEETH
T ss_pred ccchhhhHHHhhcCCceeehhhhh
Confidence 111223444 689999999998
No 369
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.94 Score=46.85 Aligned_cols=99 Identities=20% Similarity=0.244 Sum_probs=58.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccC-CC-CCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASS-SQ-VPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE 256 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~-~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 256 (985)
++.|.|...+.|.+...-+- ..+ -. .....-+-|.++|++|.||+-||++|+... . ..|++||.
T Consensus 134 DVAGLE~AKeALKEAVILPI-------KFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA--n-----STFFSvSS 199 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPI-------KFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA--N-----STFFSVSS 199 (439)
T ss_pred hhccchhHHHHHHhheeecc-------cchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc--C-----CceEEeeh
Confidence 57788888888877553211 000 00 002346789999999999999999999842 1 33455544
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHh-cCceEEEEecCCC
Q 001993 257 PFDDIRIAKAILESLKGSATNAVESETVLKQLRESI-EGKKFFLVLDDVW 305 (985)
Q Consensus 257 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~ 305 (985)
. ++.+...+. .+.+...+.+.- +.|+-+|++|.++
T Consensus 200 S--------DLvSKWmGE------SEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 200 S--------DLVSKWMGE------SEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred H--------HHHHHHhcc------HHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 2 222222221 233444444333 4789999999985
No 370
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.54 E-value=0.22 Score=56.81 Aligned_cols=115 Identities=21% Similarity=0.375 Sum_probs=66.2
Q ss_pred EEEEEEccCCchHHH-HHHHHhcchhhhccCCceEEEEeCCCC--CHHHHHHHHHHHhcCCCCC----------CC----
Q 001993 217 TIISITGMGGIGKTT-LAKLIFNDNEVRNHFNEKIWVCVSEPF--DDIRIAKAILESLKGSATN----------AV---- 279 (985)
Q Consensus 217 ~vv~I~G~gGiGKTt-La~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~----------~~---- 279 (985)
.||.|+|..|+|||| ||+.+|.+- |...--|-+.++. ....+.+.+.+.++..-.. ..
T Consensus 372 ~vvvivgETGSGKTTQl~QyL~edG-----Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T 446 (1042)
T KOG0924|consen 372 QVVVIVGETGSGKTTQLAQYLYEDG-----YADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDT 446 (1042)
T ss_pred cEEEEEecCCCCchhhhHHHHHhcc-----cccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCce
Confidence 599999999999998 777777642 2221134444443 3456778888887543110 00
Q ss_pred ------CHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhh---cCCCCCcEEEEEcCchhh
Q 001993 280 ------ESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCL---RCGSKESRILVTTRNEKV 337 (985)
Q Consensus 280 ------~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l---~~~~~gs~iivTtR~~~v 337 (985)
+.--+.+.+.+..-.|=-.||+|.+++.. -+-+-+...+ ......-|+||||-..+.
T Consensus 447 ~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERs-lNtDilfGllk~~larRrdlKliVtSATm~a 512 (1042)
T KOG0924|consen 447 KIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERS-LNTDILFGLLKKVLARRRDLKLIVTSATMDA 512 (1042)
T ss_pred eEEEeccchHHHHHhhhhhhhheeEEEechhhhcc-cchHHHHHHHHHHHHhhccceEEEeeccccH
Confidence 11112223333333455689999997532 2333333333 234557799999887554
No 371
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.51 E-value=0.34 Score=51.12 Aligned_cols=104 Identities=11% Similarity=0.169 Sum_probs=54.7
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF-DDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
...+++++|.+|+||||+++.+... ....=..+.+++..... .....++...+.++-......+.+.+...+...-+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 3469999999999999999988763 22221245556543221 12222233333332221222344555444433211
Q ss_pred -CceEEEEecCCCCC--CcccHHHHHhhhc
Q 001993 294 -GKKFFLVLDDVWTE--EPQNWEQLLGCLR 320 (985)
Q Consensus 294 -~k~~LlVlDdv~~~--~~~~~~~l~~~l~ 320 (985)
++.=++++|..... +....+++...+.
T Consensus 152 ~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~ 181 (270)
T PRK06731 152 EARVDYILIDTAGKNYRASETVEEMIETMG 181 (270)
T ss_pred cCCCCEEEEECCCCCcCCHHHHHHHHHHHh
Confidence 34568899988653 2334455554443
No 372
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.50 E-value=0.01 Score=60.08 Aligned_cols=58 Identities=29% Similarity=0.243 Sum_probs=34.6
Q ss_pred ccCCCCCeEecCCC--CCccccchhhcCCCCCcEeeccCcccccc---cchhhhhccccceeecc
Q 001993 622 KKLIHLRYLALGEN--PWIKELPEALCELCNLQTLDVSLCHYLKR---LPERIGQLINLRHLMNS 681 (985)
Q Consensus 622 ~~l~~Lr~L~L~~~--~~i~~lP~~i~~L~~L~~L~l~~~~~l~~---lP~~i~~L~~L~~L~l~ 681 (985)
-.|++|++|.++.| .....++....++++|++|++++|+ ++. ++ .+..+.+|..|++.
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~-pl~~l~nL~~Ldl~ 124 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLR-PLKELENLKSLDLF 124 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccc-hhhhhcchhhhhcc
Confidence 34567777777777 4333455555566777777777776 332 22 24556666666666
No 373
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.48 E-value=0.17 Score=56.84 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=49.6
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCC------CCCCCCHHH-----
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGS------ATNAVESET----- 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~------~~~~~~~~~----- 283 (985)
.-..++|+|..|+|||||++.+.... .....++++.-....++.++....+...... ..+......
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 34589999999999999999887632 1222344443333445555544444433111 111111111
Q ss_pred HHHHHHHHh--cCceEEEEecCC
Q 001993 284 VLKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 284 ~~~~l~~~l--~~k~~LlVlDdv 304 (985)
..-.+.+++ +++.+|+++||+
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 222244555 589999999998
No 374
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=94.47 E-value=0.23 Score=57.90 Aligned_cols=131 Identities=18% Similarity=0.189 Sum_probs=71.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
+++|....++++.+.+..-. ....-|.|.|..|+||+++|+.+++... +..-+ -+-|++..-.
T Consensus 213 ~iiG~S~~m~~~~~~i~~~A---------------~~~~pVLI~GE~GTGKe~lA~~IH~~S~-r~~~p-fv~inC~~l~ 275 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRLYA---------------RSDATVLILGESGTGKELVAQAIHQLSG-RRDFP-FVAINCGAIA 275 (526)
T ss_pred heeeCCHHHHHHHHHHHHHh---------------CCCCcEEEECCCCcCHHHHHHHHHHhcC-cCCCC-EEEeccccCC
Confidence 58999999999888875432 2235789999999999999999987321 11111 2233433322
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHH---HHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC-----------C
Q 001993 259 DDIRIAKAILESLKGSATNAVESE---TVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------K 324 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~---~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~ 324 (985)
...+. ..+.+......... .....+ + ....=-|+||++..........+...+.... .
T Consensus 276 --e~lle---seLFG~~~gaftga~~~~~~Gl~-e--~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~ 347 (526)
T TIGR02329 276 --ESLLE---AELFGYEEGAFTGARRGGRTGLI-E--AAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPV 347 (526)
T ss_pred --hhHHH---HHhcCCcccccccccccccccch-h--hcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeee
Confidence 12222 22222211100000 000000 0 1123348999998776666777777765331 1
Q ss_pred CcEEEEEcCc
Q 001993 325 ESRILVTTRN 334 (985)
Q Consensus 325 gs~iivTtR~ 334 (985)
..|||.||..
T Consensus 348 dvRiIaat~~ 357 (526)
T TIGR02329 348 DVRVVAATHC 357 (526)
T ss_pred cceEEeccCC
Confidence 2378887754
No 375
>PRK06762 hypothetical protein; Provisional
Probab=94.47 E-value=0.028 Score=55.14 Aligned_cols=22 Identities=50% Similarity=0.661 Sum_probs=20.7
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+|.|+|++|+||||+|+.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999987
No 376
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.47 E-value=0.16 Score=56.52 Aligned_cols=48 Identities=19% Similarity=0.064 Sum_probs=31.5
Q ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh---cccCcHHHHHHHHHH
Q 001993 22 AAGVRLIAGAEEEVENLHRRFHLIKAVVEDAEK---RQMKETAVRVWLDDL 69 (985)
Q Consensus 22 ~~e~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~---~~~~~~~~~~wl~~l 69 (985)
.+|.....-+++--+..-+.-..+++.+++||- +.+-.+..+.|.+.-
T Consensus 178 ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~ 228 (580)
T COG4618 178 LNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFN 228 (580)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHH
Confidence 344444555666666666677777788877774 345566778888764
No 377
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.47 E-value=0.2 Score=51.90 Aligned_cols=76 Identities=21% Similarity=0.165 Sum_probs=43.2
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC--CCHHHHHHHHHHHh----cCCC--CCCCCHHHHHHHHH
Q 001993 218 IISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP--FDDIRIAKAILESL----KGSA--TNAVESETVLKQLR 289 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l----~~~~--~~~~~~~~~~~~l~ 289 (985)
+|+|.|..|+||||+|+.+.. ..+..=..+..++...- .+....-..+.... .-+. ++..+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~--~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEH--IFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHH--HHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 589999999999999998886 23221112344443221 22222222222221 1122 56677788888888
Q ss_pred HHhcCc
Q 001993 290 ESIEGK 295 (985)
Q Consensus 290 ~~l~~k 295 (985)
.+.+++
T Consensus 79 ~L~~g~ 84 (277)
T cd02029 79 TYGETG 84 (277)
T ss_pred HHHcCC
Confidence 777654
No 378
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.44 Score=56.55 Aligned_cols=186 Identities=18% Similarity=0.196 Sum_probs=100.5
Q ss_pred ceecchh---hHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeC
Q 001993 179 EIRGRNH---LQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVS 255 (985)
Q Consensus 179 ~~vGr~~---~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s 255 (985)
++.|-++ |+++++++|..+. .. ...+..-++=|.++|++|.|||-||++++-... +-|++++
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~---~Y-----~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svS 376 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPE---QY-----QELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVS 376 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHH---HH-----HHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------Cceeeec
Confidence 5778775 5555566665432 00 001134567799999999999999999998432 3345554
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCC---------------cccHHHHHhhhc
Q 001993 256 EPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEE---------------PQNWEQLLGCLR 320 (985)
Q Consensus 256 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------------~~~~~~l~~~l~ 320 (985)
.. +.++.+.+.. ...+.+.+...-...++++.+|+++... ...+++++.-+.
T Consensus 377 GS--------EFvE~~~g~~-----asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emD 443 (774)
T KOG0731|consen 377 GS--------EFVEMFVGVG-----ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMD 443 (774)
T ss_pred hH--------HHHHHhcccc-----hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhc
Confidence 32 1222222211 1111122222224578899998874211 122344444443
Q ss_pred CCCC--CcEEEEEcCchhhHHh--hcCcc-cccccCCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCCh
Q 001993 321 CGSK--ESRILVTTRNEKVAIA--IGTTK-FNIIPIELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLP 395 (985)
Q Consensus 321 ~~~~--gs~iivTtR~~~v~~~--~~~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 395 (985)
.... +--+|-+|...++... +.... ...+.++.-+...-.++|..++..... ..+..++++ |+...-|.+
T Consensus 444 gf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~----~~e~~dl~~-~a~~t~gf~ 518 (774)
T KOG0731|consen 444 GFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL----DDEDVDLSK-LASLTPGFS 518 (774)
T ss_pred CCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC----CcchhhHHH-HHhcCCCCc
Confidence 3322 2333445555554322 11111 146777777888888999988765532 234455566 888888877
Q ss_pred hH
Q 001993 396 LA 397 (985)
Q Consensus 396 La 397 (985)
=|
T Consensus 519 ga 520 (774)
T KOG0731|consen 519 GA 520 (774)
T ss_pred HH
Confidence 44
No 379
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.42 E-value=0.29 Score=50.82 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=30.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE 256 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 256 (985)
+.-.++.|.|.+|+||||+|.+++... . ..-..++|++...
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~ 58 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEE 58 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccC
Confidence 345799999999999999999877532 2 2234678887644
No 380
>COG4240 Predicted kinase [General function prediction only]
Probab=94.41 E-value=0.14 Score=50.56 Aligned_cols=84 Identities=18% Similarity=0.214 Sum_probs=55.4
Q ss_pred CCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhc-----CCCCCCCCHHHHHHH
Q 001993 213 TQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLK-----GSATNAVESETVLKQ 287 (985)
Q Consensus 213 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-----~~~~~~~~~~~~~~~ 287 (985)
.+++-+++|.|+-|+||||++..+++.-..+.- +.++..+..+-+-..+-...++++.. .......|..-....
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 467899999999999999999999984333332 46667766655544444555555531 123445566666677
Q ss_pred HHHHhcCceE
Q 001993 288 LRESIEGKKF 297 (985)
Q Consensus 288 l~~~l~~k~~ 297 (985)
+....+++.-
T Consensus 126 Lnai~~g~~~ 135 (300)
T COG4240 126 LNAIARGGPT 135 (300)
T ss_pred HHHHhcCCCC
Confidence 7777676643
No 381
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.41 E-value=0.074 Score=52.70 Aligned_cols=21 Identities=48% Similarity=0.710 Sum_probs=19.7
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+|+|.|.+|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 382
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.39 E-value=0.22 Score=52.07 Aligned_cols=90 Identities=20% Similarity=0.201 Sum_probs=55.6
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhh--hccCCceEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCCCCHHH-
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEV--RNHFNEKIWVCVSEPF-DDIRIAKAILESLKGS-------ATNAVESET- 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~- 283 (985)
.-+.++|.|-.|+|||+|+..+.++... +++-+.++++-+.+.. +..++...+.+.=... ..+......
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 4467899999999999999998875321 1224567888887655 4455655555432111 111111111
Q ss_pred ----HHHHHHHHh--c-CceEEEEecCC
Q 001993 284 ----VLKQLRESI--E-GKKFFLVLDDV 304 (985)
Q Consensus 284 ----~~~~l~~~l--~-~k~~LlVlDdv 304 (985)
....+.+++ + ++++|+++||+
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 222345565 3 78999999999
No 383
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.38 E-value=0.93 Score=48.13 Aligned_cols=100 Identities=12% Similarity=0.054 Sum_probs=61.0
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhc-------------cCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRN-------------HFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVES 281 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~ 281 (985)
-..-..++|+.|+||+++|..++.. +-. ..+...|+.-.. .......
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~--llC~~~~~~c~~~~~~~HPD~~~i~p~~------------------~~~~I~i 77 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASL--ILKETSPEAAYKISQKIHPDIHEFSPQG------------------KGRLHSI 77 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHH--HhCCCCccHHHHHhcCCCCCEEEEecCC------------------CCCcCcH
Confidence 3457789999999999999888762 110 011111111000 0001223
Q ss_pred HHHHHHHHHHh-----cCceEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCch
Q 001993 282 ETVLKQLRESI-----EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNE 335 (985)
Q Consensus 282 ~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~ 335 (985)
++.. .+.+.+ .++.-++|+|+++....+.++.++..+.....++.+|++|.+.
T Consensus 78 dqiR-~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~ 135 (290)
T PRK05917 78 ETPR-AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKP 135 (290)
T ss_pred HHHH-HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCCh
Confidence 3332 233333 3566689999998888889999999998777777766666653
No 384
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.37 E-value=0.079 Score=49.65 Aligned_cols=44 Identities=27% Similarity=0.348 Sum_probs=32.3
Q ss_pred EEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCC
Q 001993 218 IISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGS 274 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 274 (985)
+|.|.|++|+||||+|+.++++ ..-. ++ +.-.++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~--~gl~-----~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH--LGLK-----LV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH--hCCc-----ee------eccHHHHHHHHHcCCC
Confidence 6899999999999999999983 2111 11 2346788888887654
No 385
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.34 E-value=0.033 Score=56.85 Aligned_cols=25 Identities=44% Similarity=0.660 Sum_probs=22.5
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+...+|+|+|++|+||||||+.++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999999986
No 386
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.34 E-value=0.027 Score=59.72 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.9
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+-|.++|+.|+|||++++....
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCchhHHHHhhhc
Confidence 5679999999999999999876
No 387
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.032 Score=56.05 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=38.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHF 246 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f 246 (985)
++-|-.+.+++|.+.....- .+...--..+-..++-|.++|++|.|||-+|++|+| +....|
T Consensus 178 dvggckeqieklrevve~pl----l~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPL----LHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred cccchHHHHHHHHHHHhccc----cCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 45667777777776554211 000000000123467789999999999999999999 555554
No 388
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.31 E-value=0.21 Score=52.79 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=30.7
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE 256 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 256 (985)
+.-+++.|.|.+|+|||++|.+++.. ....=..+++++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecC
Confidence 35679999999999999999998763 212224678888764
No 389
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.19 E-value=0.032 Score=56.64 Aligned_cols=84 Identities=21% Similarity=0.234 Sum_probs=53.8
Q ss_pred cCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCc--ccccccchhhhhccccceeecccccccccccCCCcCCCCCC
Q 001993 623 KLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLC--HYLKRLPERIGQLINLRHLMNSKEEWSRLSYMPRGMERLTG 700 (985)
Q Consensus 623 ~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~--~~l~~lP~~i~~L~~L~~L~l~~n~~~~l~~~p~~i~~L~~ 700 (985)
.+..|++|++.++. ++.+- .+-.|++|+.|+++.| .....++.-..++++|++|++++|....+..++ ....+.+
T Consensus 41 ~~~~le~ls~~n~g-ltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVG-LTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELEN 117 (260)
T ss_pred cccchhhhhhhccc-eeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcc
Confidence 34556666666665 43332 2446889999999998 544556655666799999999988764333332 2445566
Q ss_pred CCccCceEe
Q 001993 701 LRTLGAFVA 709 (985)
Q Consensus 701 L~~L~~~~~ 709 (985)
|..|.++.+
T Consensus 118 L~~Ldl~n~ 126 (260)
T KOG2739|consen 118 LKSLDLFNC 126 (260)
T ss_pred hhhhhcccC
Confidence 666666544
No 390
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.14 E-value=0.18 Score=53.32 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=23.7
Q ss_pred CCCCEEEEEEccCCchHHHHHHHHhc
Q 001993 213 TQRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 213 ~~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+..+|.|+|.+|+|||||+..+.+
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999999987
No 391
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.14 E-value=1.2 Score=49.24 Aligned_cols=153 Identities=18% Similarity=0.135 Sum_probs=78.3
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEE-EEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIW-VCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGK 295 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~w-v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 295 (985)
+--.++|+||.|||+++.+++|. .+.-|+ +..+..-+-.+ ++.++.. ...
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~------L~ydIydLeLt~v~~n~d-Lr~LL~~----------------------t~~ 286 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANY------LNYDIYDLELTEVKLDSD-LRHLLLA----------------------TPN 286 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhh------cCCceEEeeeccccCcHH-HHHHHHh----------------------CCC
Confidence 45689999999999999999983 222222 22222111111 2222221 234
Q ss_pred eEEEEecCCCCC------------------CcccHHHHHhhhc--CCCCC-cEE-EEEcCchhhH-Hh-hcCcc-ccccc
Q 001993 296 KFFLVLDDVWTE------------------EPQNWEQLLGCLR--CGSKE-SRI-LVTTRNEKVA-IA-IGTTK-FNIIP 350 (985)
Q Consensus 296 ~~LlVlDdv~~~------------------~~~~~~~l~~~l~--~~~~g-s~i-ivTtR~~~v~-~~-~~~~~-~~~~~ 350 (985)
+-+||+.|++.. ..-.+..|+.++. +...| -|| +.||-..+-. .+ +.... ...+.
T Consensus 287 kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~ 366 (457)
T KOG0743|consen 287 KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIY 366 (457)
T ss_pred CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEE
Confidence 567777776421 0012233444443 22232 255 5566554321 11 11111 13567
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhhh
Q 001993 351 IELLSDEDCWSIFSQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLLR 406 (985)
Q Consensus 351 l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~ 406 (985)
+.-=+.+.-..|+.++..... + ..++.+|.+...|.-+.=..++..|-
T Consensus 367 mgyCtf~~fK~La~nYL~~~~----~----h~L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 367 MGYCTFEAFKTLASNYLGIEE----D----HRLFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred cCCCCHHHHHHHHHHhcCCCC----C----cchhHHHHHHhhcCccCHHHHHHHHh
Confidence 777788888888988875432 1 23455555555565555555555553
No 392
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.13 E-value=0.13 Score=54.61 Aligned_cols=51 Identities=24% Similarity=0.280 Sum_probs=39.0
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAIL 268 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 268 (985)
+.-+++.|+|.+|+|||++|.++.. ........++||+..+. ...+.+...
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES--PEELLENAR 71 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC--HHHHHHHHH
Confidence 4568999999999999999999998 45556788999987663 344444433
No 393
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.12 E-value=0.11 Score=49.70 Aligned_cols=21 Identities=38% Similarity=0.699 Sum_probs=19.4
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+|.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 394
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.12 E-value=0.066 Score=55.55 Aligned_cols=52 Identities=31% Similarity=0.351 Sum_probs=35.6
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAK 265 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 265 (985)
++..+|+|+|.||+|||||.-.+......+++=-.++=|.-|++++--.++-
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLG 100 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILG 100 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccc
Confidence 6778999999999999999988877433333323344555566665444433
No 395
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.10 E-value=0.039 Score=55.33 Aligned_cols=24 Identities=38% Similarity=0.409 Sum_probs=21.6
Q ss_pred CCEEEEEEccCCchHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+..+|.|+|++|+||||+|+.++.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999999986
No 396
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.10 E-value=0.23 Score=55.64 Aligned_cols=89 Identities=16% Similarity=0.201 Sum_probs=46.8
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE-PFDDIRIAKAILESLKGSATNAVESETVLKQLRESIE 293 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 293 (985)
...+++++|+.|+||||++..++...........+..+.... .....+.+....+.++.......+..++...+. .+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~-~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH-ELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH-Hhc
Confidence 457999999999999999998876321122223344444322 223333444455554433322233333333332 234
Q ss_pred CceEEEEecCCC
Q 001993 294 GKKFFLVLDDVW 305 (985)
Q Consensus 294 ~k~~LlVlDdv~ 305 (985)
++ -++++|-+.
T Consensus 269 ~~-d~VLIDTaG 279 (420)
T PRK14721 269 GK-HMVLIDTVG 279 (420)
T ss_pred CC-CEEEecCCC
Confidence 33 456667663
No 397
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.09 E-value=0.31 Score=50.77 Aligned_cols=98 Identities=13% Similarity=0.175 Sum_probs=70.1
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCce
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKK 296 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 296 (985)
+.+.++|+.|+|||+-++++++. .+..+.+..+..+....+...+.......... ........+...+.+..
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~~--~~~d~~~~~~~~l~~~~ 166 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFGATDG--TINDLTERLMIRLRDTV 166 (297)
T ss_pred ceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhcccch--hHHHHHHHHHHHHccCc
Confidence 48999999999999999999983 33444556777777777777777666554322 22334455556668888
Q ss_pred EEEEecCCCCCCcccHHHHHhhhcCC
Q 001993 297 FFLVLDDVWTEEPQNWEQLLGCLRCG 322 (985)
Q Consensus 297 ~LlVlDdv~~~~~~~~~~l~~~l~~~ 322 (985)
-+++.|+........++.+.......
T Consensus 167 ~~iivDEA~~L~~~ale~lr~i~d~~ 192 (297)
T COG2842 167 RLIIVDEADRLPYRALEELRRIHDKT 192 (297)
T ss_pred ceeeeehhhccChHHHHHHHHHHHhh
Confidence 99999999877777777777665443
No 398
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.08 E-value=0.066 Score=49.53 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.7
Q ss_pred CEEEEEEccCCchHHHHHHHHhcc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
..+|.+.|.-|.||||+++.++..
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999874
No 399
>PRK03839 putative kinase; Provisional
Probab=94.06 E-value=0.034 Score=55.35 Aligned_cols=21 Identities=57% Similarity=0.888 Sum_probs=19.7
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.|.|+|++|+||||+|+.+++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999998
No 400
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.05 E-value=0.036 Score=56.14 Aligned_cols=234 Identities=18% Similarity=0.113 Sum_probs=116.2
Q ss_pred CCCCceEEEccCcCCcc-hhhhHHHhhccCCcceeecCCC--CC----CCCcccccCCCCCeEecCCCCCccccchhhcC
Q 001993 575 DETKLRSLVLDQRLSFK-PRIALSKLFDRLTCLRSIDGLP--VG----QIPKGIKKLIHLRYLALGENPWIKELPEALCE 647 (985)
Q Consensus 575 ~~~~Lr~L~l~~~~~~~-~~~~~~~~~~~l~~Lr~L~l~~--~~----~lp~~i~~l~~Lr~L~L~~~~~i~~lP~~i~~ 647 (985)
.+..+..++++||.... ....+.+.+.+-++|++-+++. .. .+|.+ +.-+-+.+-+
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~-----------------L~~Ll~aLlk 90 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSN-----------------LVMLLKALLK 90 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHH-----------------HHHHHHHHhc
Confidence 35667777888775321 1223445556666777766651 11 11211 1112234557
Q ss_pred CCCCcEeeccCcccccccch----hhhhccccceeecccccccccccCCC-cCCCCCCCCccCceEecCCCcccccCCch
Q 001993 648 LCNLQTLDVSLCHYLKRLPE----RIGQLINLRHLMNSKEEWSRLSYMPR-GMERLTGLRTLGAFVASGGKSSKACSSLK 722 (985)
Q Consensus 648 L~~L~~L~l~~~~~l~~lP~----~i~~L~~L~~L~l~~n~~~~l~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~ 722 (985)
|++|++.+|+.|..-...|+ -|++-+.|.||.+++|+.. .+.. .|+ +.|++|.... ...
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG---p~aG~rig--kal~~la~nK-----------Kaa 154 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG---PIAGGRIG--KALFHLAYNK-----------KAA 154 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC---ccchhHHH--HHHHHHHHHh-----------hhc
Confidence 78888888888775555554 3456678889988865442 1110 011 1122221100 011
Q ss_pred hhhccccCcceeeecccccccCCCCcchhhhcccccccccccEEEEEcCCCCcchhHhhhcCCCCCCCCCeEEEeeccCC
Q 001993 723 SLNKLKHLEGSLTLRGLGNERDLGDDNDDEKVDLKSKMKLVDLHLRFDSTTKTKDHRVVLECLQPPSSLEKLGIYGYAGD 802 (985)
Q Consensus 723 ~L~~L~~L~~~L~i~~l~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 802 (985)
.-+.|... ...-+.+.+- ........+.+-.+|+.+.+..|.-.........+.++.-+.+|+.|+|..|..+
T Consensus 155 ~kp~Le~v--icgrNRleng-----s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 155 DKPKLEVV--ICGRNRLENG-----SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred cCCCceEE--EeccchhccC-----cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 11111110 0000111110 1111222344445778888877763222333445566677789999999988654
Q ss_pred CCCCC--ChhhhccccccEEeEeccCCCCc-----CCCC--CCCCccceeeccCC
Q 001993 803 TISPT--SDWMLSLAKLRVLTLRFCNECEC-----LPPL--GKLPCLETLVLEGM 848 (985)
Q Consensus 803 ~~~~~--p~~~~~l~~L~~L~L~~~~~~~~-----l~~l--~~l~~L~~L~L~~~ 848 (985)
...+. ...+...+.|+.|.+.+|..... +..+ -..|+|..|.+..+
T Consensus 228 ~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 228 LEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred hhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchh
Confidence 33100 11122445689999999953221 1111 24678888877653
No 401
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.05 E-value=0.31 Score=56.76 Aligned_cols=49 Identities=22% Similarity=0.317 Sum_probs=34.5
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKA 266 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 266 (985)
..-+++.|.|.+|+|||||+.+++.. ...+=..+++++..+ +..++.+.
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eE--s~~~i~~~ 309 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEE--SRAQLLRN 309 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeC--CHHHHHHH
Confidence 45689999999999999999999874 322334567776544 44555554
No 402
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=0.25 Score=57.66 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=63.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
++-|.++-+.+|.+-+.-+-+. . ...++. -...+-|.++|++|.|||-||++|+.. |. .-|++|-.+
T Consensus 673 DVGGLeevK~eIldTIqlPL~h-p-eLfssg---lrkRSGILLYGPPGTGKTLlAKAVATE------cs-L~FlSVKGP- 739 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKH-P-ELFSSG---LRKRSGILLYGPPGTGKTLLAKAVATE------CS-LNFLSVKGP- 739 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccC-h-hhhhcc---ccccceeEEECCCCCchHHHHHHHHhh------ce-eeEEeecCH-
Confidence 6788999999988766431100 0 000000 123456899999999999999999983 21 224555432
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCC
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWT 306 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 306 (985)
++++.- ....++.+.+.+.+.-..++|.|+||.+++
T Consensus 740 ---ELLNMY---------VGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ---ELLNMY---------VGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ---HHHHHH---------hcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 122211 223345566666666667999999999864
No 403
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.00 E-value=0.23 Score=59.49 Aligned_cols=88 Identities=14% Similarity=0.177 Sum_probs=48.2
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE-PFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 294 (985)
..+++++|+.|+||||.+.+++...........+..+.... .....+.++...+.++.......+.+++...+.+ +++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hcC
Confidence 47999999999999999999887422121112444554322 1223445555555555433333344444444432 333
Q ss_pred ceEEEEecCCC
Q 001993 295 KKFFLVLDDVW 305 (985)
Q Consensus 295 k~~LlVlDdv~ 305 (985)
+ =++++|=..
T Consensus 264 ~-D~VLIDTAG 273 (767)
T PRK14723 264 K-HLVLIDTVG 273 (767)
T ss_pred C-CEEEEeCCC
Confidence 3 356666654
No 404
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.97 E-value=0.051 Score=66.31 Aligned_cols=176 Identities=16% Similarity=0.219 Sum_probs=79.5
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHH---HHHHHHHHH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESE---TVLKQLRES 291 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~---~~~~~l~~~ 291 (985)
+..++.|+|+.|.||||+.+.+.-.... .....+|.+..... ...+.++...++....-..... .-...+...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~---aq~G~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~i 396 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALM---FQSGIPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAI 396 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHH---HHhCCCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHHH
Confidence 3479999999999999999998753100 01111222211100 0011111111111000000000 001112222
Q ss_pred hc--CceEEEEecCCCCC-CcccHHHH----HhhhcCCCCCcEEEEEcCchhhHHhhcCcc-cccccCCCCChHHHHHHH
Q 001993 292 IE--GKKFFLVLDDVWTE-EPQNWEQL----LGCLRCGSKESRILVTTRNEKVAIAIGTTK-FNIIPIELLSDEDCWSIF 363 (985)
Q Consensus 292 l~--~k~~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~iivTtR~~~v~~~~~~~~-~~~~~l~~L~~~e~~~Lf 363 (985)
+. ..+-|+++|+.... +......+ ...+. ..|+.+|+||-...+........ .....+ .++. +... +
T Consensus 397 l~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~-~~d~-~~l~-p 471 (771)
T TIGR01069 397 LSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASV-LFDE-ETLS-P 471 (771)
T ss_pred HHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEE-EEcC-CCCc-e
Confidence 22 47899999998642 22223333 22332 35788999999988754432210 000111 0111 1100 0
Q ss_pred HHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhhhc
Q 001993 364 SQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLLRF 407 (985)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~ 407 (985)
.+-...+.+ . ...|-+|++++ |+|-.|..-|..+..
T Consensus 472 -~Ykl~~G~~-g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~ 507 (771)
T TIGR01069 472 -TYKLLKGIP-G-----ESYAFEIAQRY-GIPHFIIEQAKTFYG 507 (771)
T ss_pred -EEEECCCCC-C-----CcHHHHHHHHh-CcCHHHHHHHHHHHH
Confidence 011111110 1 23477888877 788887777776643
No 405
>PRK05973 replicative DNA helicase; Provisional
Probab=93.97 E-value=0.24 Score=50.97 Aligned_cols=49 Identities=10% Similarity=0.150 Sum_probs=33.3
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAI 267 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 267 (985)
.-.++.|.|.+|+|||++|.+++...- + .=..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a-~-~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM-K-SGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH-h-cCCeEEEEEEeCC--HHHHHHHH
Confidence 446899999999999999999876422 2 2235677766543 44444443
No 406
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.96 E-value=0.084 Score=54.06 Aligned_cols=26 Identities=38% Similarity=0.631 Sum_probs=21.5
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
++..+|+|+|+||+|||||...+...
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHH
Confidence 46689999999999999999998873
No 407
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.94 E-value=0.5 Score=46.90 Aligned_cols=124 Identities=15% Similarity=0.215 Sum_probs=67.9
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeC-------------------CCC------------------
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVS-------------------EPF------------------ 258 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-------------------~~~------------------ 258 (985)
-.|++|+|+.|+|||||.+-+..=+. .-...+|+.-. +.|
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~ 104 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK 104 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH
Confidence 35999999999999999998865221 12234444210 111
Q ss_pred -------CHHHHHHHHHHHhcCCC-----CCCCCH-HHHHHHHHHHhcCceEEEEecCCCCC-CcccHHHHHhhhc-CCC
Q 001993 259 -------DDIRIAKAILESLKGSA-----TNAVES-ETVLKQLRESIEGKKFFLVLDDVWTE-EPQNWEQLLGCLR-CGS 323 (985)
Q Consensus 259 -------~~~~~~~~i~~~l~~~~-----~~~~~~-~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~-~~~ 323 (985)
..++....+++.++... +...+- ++-.-.|.+.|.-++-++.||..-+. |++...+++.... -..
T Consensus 105 v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~ 184 (240)
T COG1126 105 VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE 184 (240)
T ss_pred HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH
Confidence 12233444444444321 111111 22223366777778889999998542 3333344443333 123
Q ss_pred CCcEEEEEcCchhhHHhhc
Q 001993 324 KESRILVTTRNEKVAIAIG 342 (985)
Q Consensus 324 ~gs~iivTtR~~~v~~~~~ 342 (985)
.|--.|+.|-....|..+.
T Consensus 185 eGmTMivVTHEM~FAr~Va 203 (240)
T COG1126 185 EGMTMIIVTHEMGFAREVA 203 (240)
T ss_pred cCCeEEEEechhHHHHHhh
Confidence 4556777777776666554
No 408
>PRK04040 adenylate kinase; Provisional
Probab=93.94 E-value=0.04 Score=54.97 Aligned_cols=22 Identities=32% Similarity=0.658 Sum_probs=20.7
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+|+|+|++|+||||+++.+..
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 409
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.94 E-value=0.065 Score=60.97 Aligned_cols=88 Identities=18% Similarity=0.182 Sum_probs=48.5
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhc-cCCceE-EEEeCCCCC-HHHHHHHHHHHhcCCCCCCCCH-----HHHHH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRN-HFNEKI-WVCVSEPFD-DIRIAKAILESLKGSATNAVES-----ETVLK 286 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~f~~~~-wv~~s~~~~-~~~~~~~i~~~l~~~~~~~~~~-----~~~~~ 286 (985)
.-....|+|.+|+|||||++.+++ .+.. +-++.+ .+-+.+... +.++.+.+-..+-....+.... ..+.-
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 446789999999999999999998 3322 223333 344554433 2233322211111111121111 12222
Q ss_pred HHHHHh--cCceEEEEecCC
Q 001993 287 QLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 287 ~l~~~l--~~k~~LlVlDdv 304 (985)
.+.+++ .++.+||++|++
T Consensus 493 ~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCc
Confidence 344555 689999999999
No 410
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.93 E-value=0.17 Score=59.92 Aligned_cols=115 Identities=17% Similarity=0.210 Sum_probs=63.2
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccC---CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCC---CCHHHHHHHHHH
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHF---NEKIWVCVSEPFDDIRIAKAILESLKGSATNA---VESETVLKQLRE 290 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~ 290 (985)
++..|.|.+|.||||++..+... ..... ...+.+......-...+...+...+..-.... .....-...+.+
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~--l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHr 245 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAA--LIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHR 245 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH--HHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHH
Confidence 68999999999999999888763 22111 24566666655555555555543332111000 000001122333
Q ss_pred Hhc------------Cce---EEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchh
Q 001993 291 SIE------------GKK---FFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEK 336 (985)
Q Consensus 291 ~l~------------~k~---~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 336 (985)
.|. +.+ =++|+|.+...+......+...++ +++|+|+---..+
T Consensus 246 lLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~~Q 303 (615)
T PRK10875 246 LLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDRDQ 303 (615)
T ss_pred HhCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecchhh
Confidence 331 111 289999997665555555666555 5678887654433
No 411
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.93 E-value=0.14 Score=52.99 Aligned_cols=43 Identities=30% Similarity=0.515 Sum_probs=29.6
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP 257 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~ 257 (985)
+.-+++.|.|.+|+|||++|.+++... .+..=+.++||+..+.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~-~~~~ge~vlyvs~ee~ 59 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNG-LKNFGEKVLYVSFEEP 59 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH-HHHHT--EEEEESSS-
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHh-hhhcCCcEEEEEecCC
Confidence 455799999999999999999987632 2221235788876553
No 412
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.92 E-value=0.34 Score=54.81 Aligned_cols=92 Identities=20% Similarity=0.227 Sum_probs=55.9
Q ss_pred CCCEEEEEEccCCchHHHHH-HHHhcchhhh-----ccCCceEEEEeCCCCCHHHHHHHHHHHhcC-CC-------CCCC
Q 001993 214 QRPTIISITGMGGIGKTTLA-KLIFNDNEVR-----NHFNEKIWVCVSEPFDDIRIAKAILESLKG-SA-------TNAV 279 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~-----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-~~-------~~~~ 279 (985)
.+-+.++|.|..|+|||+|| ..+.+...+. ++-..++++-+.+..+...-+...+++-+. .. .+..
T Consensus 187 GRGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 187 GRGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred cCCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 34567899999999999997 5567643221 233467888888876554445555555431 11 1111
Q ss_pred CHHH-----HHHHHHHHh--cCceEEEEecCCC
Q 001993 280 ESET-----VLKQLRESI--EGKKFFLVLDDVW 305 (985)
Q Consensus 280 ~~~~-----~~~~l~~~l--~~k~~LlVlDdv~ 305 (985)
...+ ....+.+++ +++.+|+|+||+.
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 1111 122344555 5899999999983
No 413
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.91 E-value=0.26 Score=49.02 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=21.5
Q ss_pred CEEEEEEccCCchHHHHHHHHhcc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
-.+++|+|..|.|||||++.++.-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 414
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.91 E-value=0.16 Score=59.61 Aligned_cols=132 Identities=19% Similarity=0.138 Sum_probs=71.5
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++|....++++++.+.... ..-.-|.|+|..|+||+++|+.+.+.. .+ .-..-+.++++.-.
T Consensus 205 ~~ig~s~~~~~~~~~~~~~A---------------~~~~pvlI~GE~GtGK~~lA~aiH~~s-~r-~~~pfv~inca~~~ 267 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKLA---------------MLDAPLLITGDTGTGKDLLAYACHLRS-PR-GKKPFLALNCASIP 267 (520)
T ss_pred ceeECCHHHHHHHHHHHHHh---------------CCCCCEEEECCCCccHHHHHHHHHHhC-CC-CCCCeEEeccccCC
Confidence 68999988888887775332 112347899999999999999986521 11 11122345554432
Q ss_pred CHHHHHHHHHHHhcCCCCCCCC-HHHHHHHHHHHh-cCceEEEEecCCCCCCcccHHHHHhhhcCCC-----------CC
Q 001993 259 DDIRIAKAILESLKGSATNAVE-SETVLKQLRESI-EGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------KE 325 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~g 325 (985)
...+.. .+.+....... ..+... ..+ ....=.|+||+++.........+...+..+. ..
T Consensus 268 --~~~~e~---elFG~~~~~~~~~~~~~~---g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 339 (520)
T PRK10820 268 --DDVVES---ELFGHAPGAYPNALEGKK---GFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVD 339 (520)
T ss_pred --HHHHHH---HhcCCCCCCcCCcccCCC---ChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeee
Confidence 222222 22221110000 000000 011 1223347899998777666777777775431 12
Q ss_pred cEEEEEcCch
Q 001993 326 SRILVTTRNE 335 (985)
Q Consensus 326 s~iivTtR~~ 335 (985)
.|||.||...
T Consensus 340 vRiI~st~~~ 349 (520)
T PRK10820 340 VRVICATQKN 349 (520)
T ss_pred eEEEEecCCC
Confidence 3788877654
No 415
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.90 E-value=0.48 Score=53.14 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=35.0
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCC-CCCCCEEEEEEccCCchHHHHHHHHhc
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQV-PTQRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~-~~~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.++|.+..++.+...+...-..-........+. -......|.++|++|+|||++|+.++.
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 589999988888665521000000000000000 001235799999999999999999986
No 416
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.89 E-value=0.24 Score=52.14 Aligned_cols=21 Identities=38% Similarity=0.737 Sum_probs=19.3
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.|.|+|++|+||||+|+.+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 417
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.89 E-value=0.32 Score=50.44 Aligned_cols=129 Identities=19% Similarity=0.204 Sum_probs=68.4
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhh----------------ccC-CceEEEEe----------------CC-----
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVR----------------NHF-NEKIWVCV----------------SE----- 256 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----------------~~f-~~~~wv~~----------------s~----- 256 (985)
.-.+++|+|+.|+|||||.+.++.--... ..+ ....+|.- ++
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence 34699999999999999999997621100 000 01222211 00
Q ss_pred CC---C--HHHHHHHHHHHhcCCC-----CCCCCHHHHH-HHHHHHhcCceEEEEecCCCC-CCcccHHHHHhhhcC--C
Q 001993 257 PF---D--DIRIAKAILESLKGSA-----TNAVESETVL-KQLRESIEGKKFFLVLDDVWT-EEPQNWEQLLGCLRC--G 322 (985)
Q Consensus 257 ~~---~--~~~~~~~i~~~l~~~~-----~~~~~~~~~~-~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~--~ 322 (985)
.+ + ..+...+.++.++... ...-+..+.+ -.+.+.|.+.+=+|+||+=-+ -|...--.+...+.. .
T Consensus 107 ~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~ 186 (258)
T COG1120 107 LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR 186 (258)
T ss_pred cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHH
Confidence 01 1 1223444455554321 2222233333 335567778888899998532 122222233333331 2
Q ss_pred CCCcEEEEEcCchhhHHhhcC
Q 001993 323 SKESRILVTTRNEKVAIAIGT 343 (985)
Q Consensus 323 ~~gs~iivTtR~~~v~~~~~~ 343 (985)
..|.-||+++-+.+.|...+.
T Consensus 187 ~~~~tvv~vlHDlN~A~ryad 207 (258)
T COG1120 187 EKGLTVVMVLHDLNLAARYAD 207 (258)
T ss_pred hcCCEEEEEecCHHHHHHhCC
Confidence 346679999999988876654
No 418
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.87 E-value=0.13 Score=56.76 Aligned_cols=88 Identities=18% Similarity=0.210 Sum_probs=48.7
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccC---CceEEEEe-
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHF---NEKIWVCV- 254 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f---~~~~wv~~- 254 (985)
.++|.++.++.+.-.+...- .+..... .......++-|.++|++|+|||++|+.++. .....| +..-+...
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~--~r~~~~~-~~~~e~~p~~ILLiGppG~GKT~lAraLA~--~l~~~fi~vdat~~~e~g 87 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRY--RRSQLNE-ELKDEVTPKNILMIGPTGVGKTEIARRLAK--LANAPFIKVEATKFTEVG 87 (441)
T ss_pred hccCHHHHHHHHHHHHHhhh--hhhcccc-ccccccCCceEEEECCCCCCHHHHHHHHHH--HhCCeEEEeecceeecCC
Confidence 58899888888876665320 0000000 000012346789999999999999999987 343333 22112211
Q ss_pred CCCCCHHHHHHHHHHHh
Q 001993 255 SEPFDDIRIAKAILESL 271 (985)
Q Consensus 255 s~~~~~~~~~~~i~~~l 271 (985)
....+.+.+++.+.+..
T Consensus 88 ~vG~dvE~i~r~l~e~A 104 (441)
T TIGR00390 88 YVGRDVESMVRDLTDAA 104 (441)
T ss_pred cccCCHHHHHHHHHHHH
Confidence 12235556666555543
No 419
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.87 E-value=0.095 Score=56.30 Aligned_cols=84 Identities=26% Similarity=0.233 Sum_probs=51.8
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSA-----TNAVESETVLKQL 288 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 288 (985)
+.-+++-|+|+.|+||||||..+.. .....-..++|+.....++... ++.++.+. ......++....+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHH
Confidence 4567999999999999999998887 3333445688999877766533 33333221 1123445566666
Q ss_pred HHHhc-CceEEEEecCC
Q 001993 289 RESIE-GKKFFLVLDDV 304 (985)
Q Consensus 289 ~~~l~-~k~~LlVlDdv 304 (985)
.+.++ +.--++|+|.|
T Consensus 124 e~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHHTTSESEEEEE-C
T ss_pred HHHhhcccccEEEEecC
Confidence 66664 44568899998
No 420
>PRK00625 shikimate kinase; Provisional
Probab=93.87 E-value=0.038 Score=54.22 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.4
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.|.|+||+|+||||+++.++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 421
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.86 E-value=0.23 Score=50.37 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=32.7
Q ss_pred HHHHhcCceEEEEecCCCCC-CcccHHHHHhhhcC-CCCCcEEEEEcCchhhHHhhc
Q 001993 288 LRESIEGKKFFLVLDDVWTE-EPQNWEQLLGCLRC-GSKESRILVTTRNEKVAIAIG 342 (985)
Q Consensus 288 l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~iivTtR~~~v~~~~~ 342 (985)
+.+.+-.++-++++|+--.. +...-+.+...+.. ...|..||++|.+......++
T Consensus 138 laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d 194 (200)
T PRK13540 138 LLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKAD 194 (200)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccc
Confidence 44555567789999997432 22233334444442 124667999998877665543
No 422
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.86 E-value=0.22 Score=55.93 Aligned_cols=87 Identities=18% Similarity=0.215 Sum_probs=49.5
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCC-------CCCCCCHHH---
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE-PFDDIRIAKAILESLKGS-------ATNAVESET--- 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 283 (985)
.-..++|.|..|+|||||++.+.... + . +..+.+.+.. ...+.++....+..-+.. ..+......
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~--~-~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT--D-A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC--C-C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 34689999999999999999888732 1 1 2222232333 334445555544432211 111111121
Q ss_pred --HHHHHHHHh--cCceEEEEecCCC
Q 001993 284 --VLKQLRESI--EGKKFFLVLDDVW 305 (985)
Q Consensus 284 --~~~~l~~~l--~~k~~LlVlDdv~ 305 (985)
....+.+++ +++++||++||+-
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchh
Confidence 222345555 5899999999983
No 423
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.85 E-value=0.22 Score=56.45 Aligned_cols=89 Identities=18% Similarity=0.233 Sum_probs=55.7
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCCCCHHH---
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF-DDIRIAKAILESLKGS-------ATNAVESET--- 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 283 (985)
.-+.++|.|.+|+|||||+.++++... +.+-+.++++-+.+.. .+.++...+...-... ..+......
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 446889999999999999999887432 2245667777776544 4455666655432111 111111111
Q ss_pred --HHHHHHHHh---cCceEEEEecCC
Q 001993 284 --VLKQLRESI---EGKKFFLVLDDV 304 (985)
Q Consensus 284 --~~~~l~~~l---~~k~~LlVlDdv 304 (985)
....+.+++ +++++||++||+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 233345666 389999999999
No 424
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.84 E-value=0.21 Score=46.03 Aligned_cols=70 Identities=20% Similarity=0.282 Sum_probs=39.3
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGK 295 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 295 (985)
..-|.|+|-+|+||||+|..++. .. ..-|+++|+-.....++..-=+.. .+...+.+.+.+.|...+.+.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae--~~-----~~~~i~isd~vkEn~l~~gyDE~y---~c~i~DEdkv~D~Le~~m~~G 76 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAE--KT-----GLEYIEISDLVKENNLYEGYDEEY---KCHILDEDKVLDELEPLMIEG 76 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHH--Hh-----CCceEehhhHHhhhcchhcccccc---cCccccHHHHHHHHHHHHhcC
Confidence 34588999999999999999985 21 123566655222211111111110 123345666777776666543
No 425
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.62 Score=46.67 Aligned_cols=57 Identities=9% Similarity=0.075 Sum_probs=35.0
Q ss_pred HHHHhcCceEEEEecCCCCC-CcccHHHHHhhhc-CCCCCcEEEEEcCchhhHHhhcCc
Q 001993 288 LRESIEGKKFFLVLDDVWTE-EPQNWEQLLGCLR-CGSKESRILVTTRNEKVAIAIGTT 344 (985)
Q Consensus 288 l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~-~~~~gs~iivTtR~~~v~~~~~~~ 344 (985)
+.+.+--++-+.|||..++- +.+....+...+. -...|+-+|+.|..+.+.......
T Consensus 155 ilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD 213 (251)
T COG0396 155 ILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPD 213 (251)
T ss_pred HHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCC
Confidence 44444557789999998652 2334444433333 123466788888888888777544
No 426
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.78 E-value=0.24 Score=56.53 Aligned_cols=88 Identities=13% Similarity=0.164 Sum_probs=46.8
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE-PFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEG 294 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 294 (985)
..|++++|+.|+||||++.+++.....+..-..+..+.... .....+-++...+.++.......+..+....+ ..+.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 47999999999999999999987322222122345555432 12333444444554443322222222222222 22344
Q ss_pred ceEEEEecCCC
Q 001993 295 KKFFLVLDDVW 305 (985)
Q Consensus 295 k~~LlVlDdv~ 305 (985)
+ -.+++|-..
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 4 477788774
No 427
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.78 E-value=0.15 Score=55.39 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=19.0
Q ss_pred EEEEccCCchHHHHHHHHhcc
Q 001993 219 ISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 219 v~I~G~gGiGKTtLa~~v~~~ 239 (985)
++++|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999873
No 428
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.76 E-value=0.032 Score=49.95 Aligned_cols=21 Identities=57% Similarity=0.676 Sum_probs=18.9
Q ss_pred EEEEccCCchHHHHHHHHhcc
Q 001993 219 ISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 219 v~I~G~gGiGKTtLa~~v~~~ 239 (985)
|.|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999998873
No 429
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.76 E-value=0.5 Score=51.35 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=32.0
Q ss_pred HHHHhcCceEEEEecCCCC-CCcccHHHHHhhhcCCCCCcEEEEEcCchhhHHh
Q 001993 288 LRESIEGKKFFLVLDDVWT-EEPQNWEQLLGCLRCGSKESRILVTTRNEKVAIA 340 (985)
Q Consensus 288 l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~~~ 340 (985)
+...+-.++-+++||+--. .+......+...+.....+.-||+||.+......
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~ 197 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEA 197 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHH
Confidence 3455567888999999743 2333333444444332335679999998875444
No 430
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.72 E-value=0.4 Score=48.69 Aligned_cols=53 Identities=25% Similarity=0.271 Sum_probs=32.5
Q ss_pred HHHHhcCceEEEEecCCCC-CCcccHH-HHHhhhcCCC-C-CcEEEEEcCchhhHHh
Q 001993 288 LRESIEGKKFFLVLDDVWT-EEPQNWE-QLLGCLRCGS-K-ESRILVTTRNEKVAIA 340 (985)
Q Consensus 288 l~~~l~~k~~LlVlDdv~~-~~~~~~~-~l~~~l~~~~-~-gs~iivTtR~~~v~~~ 340 (985)
+.+.+...+-++++|+.-. .+..... .+...+.... . |.-||++|.+.+....
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 4456677889999999853 2223334 4555444322 2 5568888888776543
No 431
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=93.70 E-value=0.26 Score=57.50 Aligned_cols=134 Identities=20% Similarity=0.204 Sum_probs=70.8
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++|+...+.++.+.+.... .....|.|+|.+|+|||++|+.+..... +.. ..-+-++++.-
T Consensus 139 ~lig~s~~~~~l~~~~~~~~---------------~~~~~vli~Ge~GtGK~~lA~~ih~~s~-~~~-~~~i~i~c~~~- 200 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLS---------------RSSISVLINGESGTGKELVAHALHRHSP-RAK-APFIALNMAAI- 200 (469)
T ss_pred cceecCHHHHHHHHHHHHHh---------------ccCCeEEEEeCCCCcHHHHHHHHHhcCC-CCC-CCeEeeeCCCC-
Confidence 68899988888887775432 2234688999999999999999987421 111 12233444332
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC-----------CCcE
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------KESR 327 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ 327 (985)
+...+...+...-.+........ . ...+ -....=-|+||++..........+...+..+. ...|
T Consensus 201 ~~~~~~~~lfg~~~g~~~~~~~~-~-~g~~---~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~r 275 (469)
T PRK10923 201 PKDLIESELFGHEKGAFTGANTI-R-QGRF---EQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVR 275 (469)
T ss_pred CHHHHHHHhcCCCCCCCCCCCcC-C-CCCe---eECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEE
Confidence 22222222211111100000000 0 0000 01112246889997766666777777765331 1238
Q ss_pred EEEEcCch
Q 001993 328 ILVTTRNE 335 (985)
Q Consensus 328 iivTtR~~ 335 (985)
||.||...
T Consensus 276 ii~~~~~~ 283 (469)
T PRK10923 276 IIAATHQN 283 (469)
T ss_pred EEEeCCCC
Confidence 88888643
No 432
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.70 E-value=0.0091 Score=57.92 Aligned_cols=68 Identities=15% Similarity=0.329 Sum_probs=55.4
Q ss_pred CCCCccceeeccccccccccccccccCcccccccccceeecccccCCCCC-CCCCCCCCcCeEEecCchhhh
Q 001993 882 TAFPRLETLEFLDMEKWEEWDDCEIAGGKTIMPRLRHLSICWSPELKALP-DYILGSTSLDKLLIYYSRHLN 952 (985)
Q Consensus 882 ~~fp~L~~L~l~~~~~L~~~~~~~~~~~~~~lp~L~~L~i~~c~~L~~lp-~~~~~l~~L~~L~i~~c~~l~ 952 (985)
..+++++.|.+.+|..+.+|...... +.+|+|+.|+|++|+.+++-- ..+..+++|+.|.|++.|.+.
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~---~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLG---GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhc---ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 45789999999999999999864322 378999999999999998743 345678999999999998543
No 433
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.69 E-value=0.06 Score=55.44 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=19.4
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.|.|.|++|+||||+|+.++.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999987
No 434
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.67 E-value=0.27 Score=49.80 Aligned_cols=120 Identities=14% Similarity=0.124 Sum_probs=60.0
Q ss_pred CEEEEEEccCCchHHHHHHHHhcch--h-hhcc--C--------------Cc-eEEEEeCCCCCHHHHHHHHHHHhcCCC
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDN--E-VRNH--F--------------NE-KIWVCVSEPFDDIRIAKAILESLKGSA 275 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~--~-~~~~--f--------------~~-~~wv~~s~~~~~~~~~~~i~~~l~~~~ 275 (985)
-.+++|+|..|.|||||.+.++... . ..+. | .. +.++.-....-......+++...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~---- 101 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV---- 101 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc----
Confidence 3699999999999999999988741 0 0110 0 00 11221110000001111111111
Q ss_pred CCCCCHHH-HHHHHHHHhcCceEEEEecCCCC-CCcccHHHHHhhhcCC-CCCcEEEEEcCchhhHH
Q 001993 276 TNAVESET-VLKQLRESIEGKKFFLVLDDVWT-EEPQNWEQLLGCLRCG-SKESRILVTTRNEKVAI 339 (985)
Q Consensus 276 ~~~~~~~~-~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~ 339 (985)
....+..+ ..-.+.+.+-..+-++++|+.-. .+......+...+... ..|.-||++|.+.....
T Consensus 102 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 102 NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 11122222 22234455667788999999743 2333344444444322 23567888888877655
No 435
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=0.15 Score=55.36 Aligned_cols=82 Identities=23% Similarity=0.288 Sum_probs=52.3
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-----CCCCHHHHHHHHH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSAT-----NAVESETVLKQLR 289 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 289 (985)
.-+++.|-|-+|||||||..+++. +....- .+++|+-.+ +..++ +--+.+++.... .+.+.+.+.+.+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEEeCCc--CHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 457999999999999999999998 444333 677775433 33332 333455543221 2344555444444
Q ss_pred HHhcCceEEEEecCCC
Q 001993 290 ESIEGKKFFLVLDDVW 305 (985)
Q Consensus 290 ~~l~~k~~LlVlDdv~ 305 (985)
+ .++-++|+|-+.
T Consensus 166 ~---~~p~lvVIDSIQ 178 (456)
T COG1066 166 Q---EKPDLVVIDSIQ 178 (456)
T ss_pred h---cCCCEEEEeccc
Confidence 3 688999999984
No 436
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.64 E-value=0.3 Score=48.14 Aligned_cols=119 Identities=15% Similarity=0.078 Sum_probs=65.7
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEe---CCCCCHHHHHHHHH--HHhc-CCC--CCCCCHHH----
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCV---SEPFDDIRIAKAIL--ESLK-GSA--TNAVESET---- 283 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~---s~~~~~~~~~~~i~--~~l~-~~~--~~~~~~~~---- 283 (985)
...|.|+|..|-||||.|..++- +..++=..+..+-+ .........+..+- .... +.. ....+.++
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 46899999999999999988776 32222222333332 22234444443320 0000 110 01111111
Q ss_pred ---HHHHHHHHhc-CceEEEEecCCCC---CCcccHHHHHhhhcCCCCCcEEEEEcCchh
Q 001993 284 ---VLKQLRESIE-GKKFFLVLDDVWT---EEPQNWEQLLGCLRCGSKESRILVTTRNEK 336 (985)
Q Consensus 284 ---~~~~l~~~l~-~k~~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtR~~~ 336 (985)
.....++.+. ++-=|||||.+-. ...-..+++...+.....+..||+|-|+..
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 2223344444 3445999999832 223456778888877777889999999764
No 437
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.64 E-value=0.29 Score=55.31 Aligned_cols=89 Identities=21% Similarity=0.269 Sum_probs=54.5
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCCCCHHH---
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF-DDIRIAKAILESLKGS-------ATNAVESET--- 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 283 (985)
.-+.++|.|.+|+|||||+.+++...... +=..++++-+.+.. .+.+++..+...-... ..+......
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 44688999999999999999887632211 11346677776544 4456666666532211 111111121
Q ss_pred --HHHHHHHHh---cCceEEEEecCC
Q 001993 284 --VLKQLRESI---EGKKFFLVLDDV 304 (985)
Q Consensus 284 --~~~~l~~~l---~~k~~LlVlDdv 304 (985)
..-.+.+++ +++++||++|++
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 223355666 689999999999
No 438
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.63 E-value=0.23 Score=48.04 Aligned_cols=116 Identities=18% Similarity=0.200 Sum_probs=61.4
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC--CHHHHHHHHHHHhcCCCCCCCCH-HHHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF--DDIRIAKAILESLKGSATNAVES-ETVLKQLRESIE 293 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~l~~~l~ 293 (985)
.+++|+|..|.|||||++.+... . ......+++.-.... ..... ...+.-... .+. +...-.+...+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~--~-~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~q--lS~G~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGL--L-KPTSGEILIDGKDIAKLPLEEL----RRRIGYVPQ--LSGGQRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--C-CCCccEEEECCEEcccCCHHHH----HhceEEEee--CCHHHHHHHHHHHHHh
Confidence 69999999999999999999873 2 223444444321111 11111 111111000 111 222223445556
Q ss_pred CceEEEEecCCCC-CCcccHHHHHhhhcCC-CCCcEEEEEcCchhhHHhh
Q 001993 294 GKKFFLVLDDVWT-EEPQNWEQLLGCLRCG-SKESRILVTTRNEKVAIAI 341 (985)
Q Consensus 294 ~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~~ 341 (985)
..+-++++|+.-. .+......+...+... ..+.-++++|.+.......
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 6788999999853 2223334444444321 1245688888877665543
No 439
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.61 E-value=0.31 Score=58.62 Aligned_cols=85 Identities=21% Similarity=0.193 Sum_probs=57.4
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSA-----TNAVESETVLKQL 288 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 288 (985)
+.-+++-|+|.+|+||||||.+++.... ..=..++|+.....++.. .+++++.+. ......++....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a~--~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANAQ--AAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 4568999999999999999988765322 222467899887777643 566665432 1233445555556
Q ss_pred HHHhc-CceEEEEecCCC
Q 001993 289 RESIE-GKKFFLVLDDVW 305 (985)
Q Consensus 289 ~~~l~-~k~~LlVlDdv~ 305 (985)
...++ ++.-|||+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55554 467799999984
No 440
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.59 E-value=0.4 Score=50.51 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=21.6
Q ss_pred CEEEEEEccCCchHHHHHHHHhcc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
-.+++|+|..|.|||||++.++.-
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 441
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.59 E-value=0.29 Score=54.92 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.4
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+.+|.++|.+|+||||+|..++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999999886
No 442
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.59 E-value=0.32 Score=55.75 Aligned_cols=82 Identities=23% Similarity=0.289 Sum_probs=47.1
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHHH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSA-----TNAVESETVLKQLR 289 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 289 (985)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++..+. ...+... ++.++... ....+.+++...+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~--~a~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAAR--LAAAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 4579999999999999999999874 2222235778876443 3333222 34443211 11123343333332
Q ss_pred HHhcCceEEEEecCC
Q 001993 290 ESIEGKKFFLVLDDV 304 (985)
Q Consensus 290 ~~l~~k~~LlVlDdv 304 (985)
+.+.-++|+|.+
T Consensus 154 ---~~~~~lVVIDSI 165 (446)
T PRK11823 154 ---EEKPDLVVIDSI 165 (446)
T ss_pred ---hhCCCEEEEech
Confidence 235557788877
No 443
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.56 E-value=0.44 Score=49.22 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=21.1
Q ss_pred EEEEEEccCCchHHHHHHHHhcc
Q 001993 217 TIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
.+++|.|..|+|||||++.++..
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999873
No 444
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.56 E-value=0.37 Score=50.05 Aligned_cols=115 Identities=18% Similarity=0.231 Sum_probs=66.2
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhcc-CCceEEEEeCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNH-FNEKIWVCVSEP 257 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~s~~ 257 (985)
.++|-.-..+.|+..+..-- .......+-+++.+|..|+||.-.++.++++-...+- =+.+-
T Consensus 83 ~lfGQHla~~~Vv~alk~~~----------~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~------- 145 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHW----------ANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVH------- 145 (344)
T ss_pred HhhchHHHHHHHHHHHHHHh----------cCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHH-------
Confidence 56777666677776665322 1111356789999999999999999998885322111 01111
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCH----HHHHHHHHHHh-cCceEEEEecCCCCCCcccHHHHHhhhc
Q 001993 258 FDDIRIAKAILESLKGSATNAVES----ETVLKQLRESI-EGKKFFLVLDDVWTEEPQNWEQLLGCLR 320 (985)
Q Consensus 258 ~~~~~~~~~i~~~l~~~~~~~~~~----~~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~ 320 (985)
...... .-+..... +++...+++.+ .-+|-|+|+|+++.....-.+.+.+++.
T Consensus 146 --------~fvat~--hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 146 --------HFVATL--HFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred --------Hhhhhc--cCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 011111 01111122 23334444443 3589999999997666666777777776
No 445
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.50 E-value=0.033 Score=33.54 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=15.0
Q ss_pred CCcEeeccCcccccccchhhhh
Q 001993 650 NLQTLDVSLCHYLKRLPERIGQ 671 (985)
Q Consensus 650 ~L~~L~l~~~~~l~~lP~~i~~ 671 (985)
+|++||+++|. ++.+|.++++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 47788888885 6677776554
No 446
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.49 E-value=0.45 Score=49.92 Aligned_cols=55 Identities=16% Similarity=0.197 Sum_probs=37.9
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLK 272 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 272 (985)
.-.++.|.|.+|+|||++|.+++.+.-.. +=..++|++... +..++...++....
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-~g~~vly~s~E~--~~~~~~~r~~~~~~ 66 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK-QGKPVLFFSLEM--SKEQLLQRLLASES 66 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCceEEEeCCC--CHHHHHHHHHHHhc
Confidence 44699999999999999999987742222 123567776654 56677777665443
No 447
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.47 E-value=0.25 Score=55.32 Aligned_cols=86 Identities=14% Similarity=0.178 Sum_probs=51.9
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCC-HHHHHHHHHHHhcCC-------CCCCCCHHH---
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFD-DIRIAKAILESLKGS-------ATNAVESET--- 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~~--- 283 (985)
.-..++|+|..|+|||||++.++... ..+.++.+-+.+... +.++...++..-... ..+......
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 34689999999999999999998631 124555565665443 345555554432111 111111111
Q ss_pred --HHHHHHHHh--cCceEEEEecCC
Q 001993 284 --VLKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 284 --~~~~l~~~l--~~k~~LlVlDdv 304 (985)
..-.+.+++ +++++||++||+
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 122244555 689999999999
No 448
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.43 E-value=0.3 Score=49.12 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=27.8
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccC--------CceEEEEeCCC
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHF--------NEKIWVCVSEP 257 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--------~~~~wv~~s~~ 257 (985)
.++.|+|++|+||||++..++...-....| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 489999999999999999987743222222 25778876655
No 449
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.42 E-value=0.068 Score=50.29 Aligned_cols=23 Identities=39% Similarity=0.733 Sum_probs=20.7
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.++|.|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 68999999999999999987765
No 450
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.42 E-value=0.055 Score=53.51 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=21.2
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
...|.|+|++|+||||+|+.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 451
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.42 E-value=0.4 Score=51.87 Aligned_cols=85 Identities=15% Similarity=0.190 Sum_probs=49.5
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeC-CCCCHHHHHHHHHHHhcCC-------CCCCCCHHH----
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVS-EPFDDIRIAKAILESLKGS-------ATNAVESET---- 283 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 283 (985)
-..++|+|..|.|||||.+.+..... -+..+..-+. +..+..++....+..-... ..+......
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 45789999999999999999987322 1233334443 3344555555555432211 111111111
Q ss_pred -HHHHHHHHh--cCceEEEEecCC
Q 001993 284 -VLKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 284 -~~~~l~~~l--~~k~~LlVlDdv 304 (985)
..-.+.+++ +++.+||++||+
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccc
Confidence 222244454 589999999998
No 452
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.39 E-value=1.1 Score=45.65 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.8
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
-.+++|.|..|.|||||++.++.
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999975
No 453
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=93.36 E-value=0.42 Score=55.69 Aligned_cols=134 Identities=18% Similarity=0.171 Sum_probs=71.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++|....+.++...+.... .....+.|.|..|+||+++|+.+.... .......+-+++..-
T Consensus 135 ~lig~s~~~~~v~~~i~~~a---------------~~~~~vli~Ge~GtGK~~~A~~ih~~~--~~~~~~~~~~~c~~~- 196 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLS---------------RSDITVLINGESGTGKELVARALHRHS--PRANGPFIALNMAAI- 196 (463)
T ss_pred ceeecCHHHHHHHHHHHHHh---------------CcCCeEEEECCCCCCHHHHHHHHHHhC--CCCCCCeEEEeCCCC-
Confidence 57888877788877775432 223457899999999999999998632 111122233333332
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC-----------CCcE
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS-----------KESR 327 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ 327 (985)
..+.+...+ .+......... .............-.|+||+|..........+...+..+. .+.+
T Consensus 197 -~~~~~~~~l---fg~~~~~~~~~-~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~r 271 (463)
T TIGR01818 197 -PKDLIESEL---FGHEKGAFTGA-NTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVR 271 (463)
T ss_pred -CHHHHHHHh---cCCCCCCCCCc-ccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeE
Confidence 223333322 12111000000 0000000011223448999998777667777777765331 2458
Q ss_pred EEEEcCch
Q 001993 328 ILVTTRNE 335 (985)
Q Consensus 328 iivTtR~~ 335 (985)
||.||...
T Consensus 272 ii~~~~~~ 279 (463)
T TIGR01818 272 IVAATHQN 279 (463)
T ss_pred EEEeCCCC
Confidence 88888643
No 454
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.35 E-value=0.49 Score=54.21 Aligned_cols=41 Identities=27% Similarity=0.321 Sum_probs=30.0
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE 256 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 256 (985)
..-.++.|.|.+|+|||||+.+++.. ....-..++|++..+
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~--~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQ--LAKNQMKVLYVSGEE 132 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEECcC
Confidence 34579999999999999999999763 222223577887544
No 455
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=93.34 E-value=0.21 Score=59.07 Aligned_cols=113 Identities=17% Similarity=0.185 Sum_probs=58.5
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccC----CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCC---CCHHHHHHHHH
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHF----NEKIWVCVSEPFDDIRIAKAILESLKGSATNA---VESETVLKQLR 289 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f----~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~ 289 (985)
++..|.|.+|.||||++..+..- ..... ...+-+.+....-...+...+......-.... .....-...+.
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~--l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~~~~~~~~~~~a~TiH 238 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLA--LVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAAEALIAALPSEAVTIH 238 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH--HHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccchhhhhccccccchhh
Confidence 58999999999999999888762 22111 13455555444444444444433221100000 00000011122
Q ss_pred HHhc------------Cc---eEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCc
Q 001993 290 ESIE------------GK---KFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRN 334 (985)
Q Consensus 290 ~~l~------------~k---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 334 (985)
+.|. +. -=+||+|++...+......+...++ .++|+|+.--.
T Consensus 239 rlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~~l~~~ll~al~---~~~rlIlvGD~ 295 (586)
T TIGR01447 239 RLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDLPLMAKLLKALP---PNTKLILLGDK 295 (586)
T ss_pred hhhcccCCcchhhhcccCCCcccEEEEcccccCCHHHHHHHHHhcC---CCCEEEEECCh
Confidence 2221 11 1289999997666555666666554 46788876543
No 456
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=93.34 E-value=0.21 Score=47.12 Aligned_cols=39 Identities=21% Similarity=0.345 Sum_probs=29.9
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEe
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCV 254 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~ 254 (985)
..--+.|+|-||+||+++.+.+|.- -....|...|||..
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkg-ifTkdykktIgvdf 57 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVDF 57 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhcc-ccccccccccchhh
Confidence 3445789999999999999999963 23455677888854
No 457
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.34 E-value=0.051 Score=53.57 Aligned_cols=24 Identities=42% Similarity=0.614 Sum_probs=21.8
Q ss_pred CEEEEEEccCCchHHHHHHHHhcc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
..+|+|-||=|+||||||+.+++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 368999999999999999999983
No 458
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.34 E-value=0.48 Score=51.50 Aligned_cols=26 Identities=31% Similarity=0.612 Sum_probs=23.1
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
....+++++|++|+||||++..++..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35689999999999999999999873
No 459
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.31 E-value=0.18 Score=55.86 Aligned_cols=112 Identities=13% Similarity=0.234 Sum_probs=59.9
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLRESIEGK 295 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 295 (985)
...+.|.|+.|+||||+++.+.+ .+.......++. +.++... ........+.... ...+.......++..|...
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~t-iEdp~E~--~~~~~~~~i~q~e-vg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIIT-IEDPIEY--VHRNKRSLINQRE-VGLDTLSFANALRAALRED 195 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEE-EcCChhh--hccCccceEEccc-cCCCCcCHHHHHHHhhccC
Confidence 36899999999999999998886 344344444443 2222111 0000000000000 1111223455677778888
Q ss_pred eEEEEecCCCCCCcccHHHHHhhhcCCCCCcEEEEEcCchhhH
Q 001993 296 KFFLVLDDVWTEEPQNWEQLLGCLRCGSKESRILVTTRNEKVA 338 (985)
Q Consensus 296 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~~~v~ 338 (985)
+=.|++|++- +.+.+...... ...|-.|+.|.-.....
T Consensus 196 pd~i~vgEir--d~~~~~~~l~a---a~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 196 PDVILIGEMR--DLETVELALTA---AETGHLVFGTLHTNSAA 233 (343)
T ss_pred CCEEEEeCCC--CHHHHHHHHHH---HHcCCcEEEEEcCCCHH
Confidence 9999999994 33344432222 23455566665544443
No 460
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.30 E-value=0.059 Score=51.23 Aligned_cols=20 Identities=55% Similarity=0.873 Sum_probs=18.4
Q ss_pred EEEEEccCCchHHHHHHHHh
Q 001993 218 IISITGMGGIGKTTLAKLIF 237 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~ 237 (985)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999998886
No 461
>PRK05922 type III secretion system ATPase; Validated
Probab=93.30 E-value=0.47 Score=53.30 Aligned_cols=86 Identities=14% Similarity=0.222 Sum_probs=49.7
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC-CCHHHHHHHHHHHhcCCC-------CCCCCHHH---
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP-FDDIRIAKAILESLKGSA-------TNAVESET--- 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~--- 283 (985)
.-..++|+|..|+|||||.+.+.... ..+..+.+-++.. ....+.+.+......... .+......
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 34578999999999999999998732 1233344334332 233445545443332211 11111111
Q ss_pred --HHHHHHHHh--cCceEEEEecCC
Q 001993 284 --VLKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 284 --~~~~l~~~l--~~k~~LlVlDdv 304 (985)
..-.+.+++ +++++||++||+
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 223345555 589999999999
No 462
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.29 E-value=0.34 Score=54.44 Aligned_cols=86 Identities=20% Similarity=0.284 Sum_probs=50.8
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCC-CCHHHHHHHHHHHhcCC-------CCCCCCHHHH--
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEP-FDDIRIAKAILESLKGS-------ATNAVESETV-- 284 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~~-- 284 (985)
.-..++|.|..|+|||||++.+.+.. +.+..+++.+.+. ..+.+++.+....=... ..+.......
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 44689999999999999999998732 2344555555543 34445555543311010 1111112221
Q ss_pred ---HHHHHHHh--cCceEEEEecCC
Q 001993 285 ---LKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 285 ---~~~l~~~l--~~k~~LlVlDdv 304 (985)
...+.+++ +++++||++||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 22244555 589999999999
No 463
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.27 E-value=0.048 Score=54.48 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=19.4
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+|.|+|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999886
No 464
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.25 E-value=0.29 Score=51.27 Aligned_cols=86 Identities=21% Similarity=0.215 Sum_probs=49.6
Q ss_pred CCEEEEEEccCCchHHHHH-HHHhcchhhhccCCce-EEEEeCCCC-CHHHHHHHHHHHhcCC-------CCCCCCHHH-
Q 001993 215 RPTIISITGMGGIGKTTLA-KLIFNDNEVRNHFNEK-IWVCVSEPF-DDIRIAKAILESLKGS-------ATNAVESET- 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~- 283 (985)
.-+.++|.|.+|+|||+|| ..+.+. . +-+.+ +++-+.+.. ...++.+.+.+.-... ..+......
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~--~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQ--K--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHh--c--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 4467899999999999996 556542 1 22333 566666654 3455555555432111 111111111
Q ss_pred ----HHHHHHHHh--cCceEEEEecCC
Q 001993 284 ----VLKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 284 ----~~~~l~~~l--~~k~~LlVlDdv 304 (985)
..-.+.+++ +++.+|||+||+
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~Dsl 170 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcCh
Confidence 122334444 589999999999
No 465
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.24 E-value=0.048 Score=55.22 Aligned_cols=21 Identities=52% Similarity=0.708 Sum_probs=19.5
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+|+|.|..|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 466
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=93.21 E-value=1.1 Score=43.53 Aligned_cols=22 Identities=41% Similarity=0.652 Sum_probs=20.2
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
..+.|.|+.|+|||||.+.++-
T Consensus 29 e~~~i~G~NG~GKTtLLRilaG 50 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAG 50 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHc
Confidence 4889999999999999999876
No 467
>PHA02774 E1; Provisional
Probab=93.19 E-value=0.31 Score=55.96 Aligned_cols=39 Identities=13% Similarity=0.143 Sum_probs=28.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE 256 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 256 (985)
+.-..+.|+|++|.|||.+|..+.+ ... -..+.||+...
T Consensus 432 PKknciv~~GPP~TGKS~fa~sL~~--~L~--G~vi~fvN~~s 470 (613)
T PHA02774 432 PKKNCLVIYGPPDTGKSMFCMSLIK--FLK--GKVISFVNSKS 470 (613)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHH--HhC--CCEEEEEECcc
Confidence 3446899999999999999999987 222 22355776533
No 468
>PRK08149 ATP synthase SpaL; Validated
Probab=93.18 E-value=0.42 Score=53.66 Aligned_cols=86 Identities=17% Similarity=0.269 Sum_probs=51.5
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhcCC-------CCCCCCHH----
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE-PFDDIRIAKAILESLKGS-------ATNAVESE---- 282 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 282 (985)
.-..++|+|..|+|||||++.++.... -+.++...+.. ..++.++....+...... ..+.....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 446899999999999999999987321 22333344433 344556666666543221 11111111
Q ss_pred -HHHHHHHHHh--cCceEEEEecCC
Q 001993 283 -TVLKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 283 -~~~~~l~~~l--~~k~~LlVlDdv 304 (985)
.....+.+++ +++++||++||+
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccch
Confidence 1233344555 589999999998
No 469
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.18 E-value=0.76 Score=47.39 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.9
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
-.+++|+|..|.|||||++.++.
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999875
No 470
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.17 E-value=0.12 Score=46.77 Aligned_cols=51 Identities=20% Similarity=0.358 Sum_probs=34.6
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcc
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
.++|-.-..+.|++.+..--. ......+-|++.+|.+|+|||.+++.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~----------~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLA----------NPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHc----------CCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 466666555555555543210 001356789999999999999999888875
No 471
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.16 E-value=0.39 Score=54.01 Aligned_cols=87 Identities=15% Similarity=0.167 Sum_probs=51.8
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCC-HHHHHHHHHHHhcCC-------CCCCCCHHH---
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFD-DIRIAKAILESLKGS-------ATNAVESET--- 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~~--- 283 (985)
.-..++|+|..|+|||||++.+++... .+.++++-+.+... +.++....+..-+.. ..+......
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 456889999999999999999987321 23445555655443 445554444432211 111111111
Q ss_pred --HHHHHHHHh--cCceEEEEecCCC
Q 001993 284 --VLKQLRESI--EGKKFFLVLDDVW 305 (985)
Q Consensus 284 --~~~~l~~~l--~~k~~LlVlDdv~ 305 (985)
..-.+.+++ +++.+|+++||+-
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 222344555 5899999999993
No 472
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.13 E-value=0.1 Score=49.24 Aligned_cols=39 Identities=21% Similarity=0.357 Sum_probs=26.9
Q ss_pred EEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCC
Q 001993 217 TIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSE 256 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~ 256 (985)
++|.|+|..|+|||||++.+.+. -.+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~-l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE-LKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH-HHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHH-HhHcCCceEEEEEccC
Confidence 48999999999999999999984 2234555555555544
No 473
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.13 E-value=0.055 Score=51.96 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=19.2
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
++.|+|++|+||||+|+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 478999999999999999987
No 474
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.12 E-value=0.067 Score=53.19 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.2
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+++|+|+.|+||||+++.+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999877
No 475
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.11 E-value=0.4 Score=48.21 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=21.1
Q ss_pred CEEEEEEccCCchHHHHHHHHhc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
-.+++|+|..|.|||||++.++.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 36999999999999999999986
No 476
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.11 E-value=0.053 Score=53.75 Aligned_cols=21 Identities=52% Similarity=0.756 Sum_probs=19.6
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+|+|.|.+|+||||+|+.++.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 477
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.11 E-value=0.44 Score=49.26 Aligned_cols=53 Identities=11% Similarity=0.151 Sum_probs=31.9
Q ss_pred HHHHhcCceEEEEecCCCC-CCcccHHHHHhhhcCC-CCCcEEEEEcCchhhHHh
Q 001993 288 LRESIEGKKFFLVLDDVWT-EEPQNWEQLLGCLRCG-SKESRILVTTRNEKVAIA 340 (985)
Q Consensus 288 l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~~~v~~~ 340 (985)
+...+-..+-++++|+--. .+....+.+...+... ..|..||++|.+......
T Consensus 135 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~ 189 (223)
T TIGR03740 135 IAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQ 189 (223)
T ss_pred HHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 3445556778999998743 2333344444444322 235678999988776544
No 478
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.07 E-value=1 Score=46.16 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.4
Q ss_pred CEEEEEEccCCchHHHHHHHHhcc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
-.+++|+|..|.|||||++.++..
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 358999999999999999999763
No 479
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.06 E-value=0.062 Score=53.17 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.6
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
++|.+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999987
No 480
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.03 E-value=0.09 Score=64.41 Aligned_cols=177 Identities=19% Similarity=0.223 Sum_probs=81.7
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHH---HHHHHHH
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETV---LKQLRES 291 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~---~~~l~~~ 291 (985)
+.+++.|+|+.+.||||+.+.+.-..-. .....+|.+.... ...++..|...++....-....... ...+...
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~m---aq~G~~vpa~~~~-~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~I 401 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALM---AKSGLPIPANEPS-EIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRI 401 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHH---HHhCCCcccCCCc-cccccceEEEecCCccchhhchhHHHHHHHHHHHH
Confidence 4578999999999999999988542111 1112223322110 0111111111121111111111111 1112222
Q ss_pred hc--CceEEEEecCCCCC-CcccHHHH----HhhhcCCCCCcEEEEEcCchhhHHhhcCcc-cccccCCCCChHHHHHHH
Q 001993 292 IE--GKKFFLVLDDVWTE-EPQNWEQL----LGCLRCGSKESRILVTTRNEKVAIAIGTTK-FNIIPIELLSDEDCWSIF 363 (985)
Q Consensus 292 l~--~k~~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~iivTtR~~~v~~~~~~~~-~~~~~l~~L~~~e~~~Lf 363 (985)
+. ..+-|+++|..... +...-..+ ...+. ..|+.+|+||...++........ .....+. ++ ++.....
T Consensus 402 l~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d-~~~l~~~ 477 (782)
T PRK00409 402 LEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE-FD-EETLRPT 477 (782)
T ss_pred HHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Ee-cCcCcEE
Confidence 22 47789999998642 22222233 22232 24779999999988776543321 0011111 11 1111100
Q ss_pred HHHhcCCCCCcccchhHHHHHHHHHHhcCCChhHHHHHHhhhhcC
Q 001993 364 SQLALSRRLDIEESENFENIGRQIVSKCKGLPLAVKTLGSLLRFK 408 (985)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~ 408 (985)
+-+..+.+ -...|-+|++++ |+|-.|..-|..+-..
T Consensus 478 --Ykl~~G~~------g~S~a~~iA~~~-Glp~~ii~~A~~~~~~ 513 (782)
T PRK00409 478 --YRLLIGIP------GKSNAFEIAKRL-GLPENIIEEAKKLIGE 513 (782)
T ss_pred --EEEeeCCC------CCcHHHHHHHHh-CcCHHHHHHHHHHHhh
Confidence 11111110 123477888877 7888777777766433
No 481
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.02 E-value=0.14 Score=51.92 Aligned_cols=22 Identities=32% Similarity=0.235 Sum_probs=20.6
Q ss_pred EEEEEEccCCchHHHHHHHHhc
Q 001993 217 TIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
.+++|+|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6999999999999999999984
No 482
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.02 E-value=0.11 Score=55.88 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=41.4
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhc
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+|+|.++.++++++.+..... .-+..-+|+.++|+.|.||||||..+.+
T Consensus 62 ~~~G~~~~i~~lV~~fk~AA~-----------g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 62 EFYGMEETIERLVNYFKSAAQ-----------GLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccCcHHHHHHHHHHHHHHHh-----------ccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999976541 1145678999999999999999998876
No 483
>PF13245 AAA_19: Part of AAA domain
Probab=92.99 E-value=0.15 Score=42.17 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=17.2
Q ss_pred CEEEEEEccCCchHHHHH-HHHhc
Q 001993 216 PTIISITGMGGIGKTTLA-KLIFN 238 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa-~~v~~ 238 (985)
.+++.|.|++|.|||+++ ..+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999554 44444
No 484
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.97 E-value=0.1 Score=50.74 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.5
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
....+++|+|..|+|||||++.+..
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHH
Confidence 3567999999999999999999987
No 485
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=92.94 E-value=0.23 Score=55.80 Aligned_cols=89 Identities=17% Similarity=0.166 Sum_probs=51.8
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCC-------CCCCCCH-----H
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGS-------ATNAVES-----E 282 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-------~~~~~~~-----~ 282 (985)
.-..++|.|..|+|||||++.++..... ...++...-.+.....+++...+..-+.. ..+.... .
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 4468899999999999999999874321 11233322223356666666655543221 1111111 1
Q ss_pred HHHHHHHHHh--cCceEEEEecCCCC
Q 001993 283 TVLKQLRESI--EGKKFFLVLDDVWT 306 (985)
Q Consensus 283 ~~~~~l~~~l--~~k~~LlVlDdv~~ 306 (985)
.....+.+++ +++++||++||+-.
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHH
Confidence 1223344555 58999999999943
No 486
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=92.92 E-value=0.34 Score=58.84 Aligned_cols=130 Identities=21% Similarity=0.194 Sum_probs=71.3
Q ss_pred ceecchhhHHHHHHHHhcCCCCCccccccCCCCCCCCCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCC
Q 001993 179 EIRGRNHLQNKVASLLMSGSESSTASAASSSQVPTQRPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPF 258 (985)
Q Consensus 179 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~ 258 (985)
.++|....+.++.+.+.... ....-|.|+|..|+||+++|+.+.+.... .-..-+.|++..-.
T Consensus 326 ~l~g~s~~~~~~~~~~~~~a---------------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r--~~~pfv~vnc~~~~ 388 (638)
T PRK11388 326 HMPQDSPQMRRLIHFGRQAA---------------KSSFPVLLCGEEGVGKALLAQAIHNESER--AAGPYIAVNCQLYP 388 (638)
T ss_pred ceEECCHHHHHHHHHHHHHh---------------CcCCCEEEECCCCcCHHHHHHHHHHhCCc--cCCCeEEEECCCCC
Confidence 68899988888888776443 12234789999999999999999873211 11122334444322
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCceEEEEecCCCCCCcccHHHHHhhhcCCC---C--------CcE
Q 001993 259 DDIRIAKAILESLKGSATNAVESETVLKQLRESIEGKKFFLVLDDVWTEEPQNWEQLLGCLRCGS---K--------ESR 327 (985)
Q Consensus 259 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~---~--------gs~ 327 (985)
...+...++....+.... .... .+ -....=.|+||++..........+...+..+. . ..|
T Consensus 389 -~~~~~~elfg~~~~~~~~-~~~g----~~---~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~r 459 (638)
T PRK11388 389 -DEALAEEFLGSDRTDSEN-GRLS----KF---ELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVR 459 (638)
T ss_pred -hHHHHHHhcCCCCcCccC-CCCC----ce---eECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEE
Confidence 122222222211110000 0000 00 01223458999998777777777877775331 1 346
Q ss_pred EEEEcCc
Q 001993 328 ILVTTRN 334 (985)
Q Consensus 328 iivTtR~ 334 (985)
||.||..
T Consensus 460 iI~~t~~ 466 (638)
T PRK11388 460 VIATTTA 466 (638)
T ss_pred EEEeccC
Confidence 7777654
No 487
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.88 E-value=0.71 Score=46.45 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.5
Q ss_pred CEEEEEEccCCchHHHHHHHHhcc
Q 001993 216 PTIISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
-.+++|.|..|.|||||.+.++.-
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 488
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.87 E-value=0.13 Score=51.38 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=18.8
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999999884
No 489
>PRK09099 type III secretion system ATPase; Provisional
Probab=92.86 E-value=0.43 Score=53.89 Aligned_cols=87 Identities=17% Similarity=0.210 Sum_probs=50.1
Q ss_pred CCEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCC-------CCCCCCHHH----
Q 001993 215 RPTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGS-------ATNAVESET---- 283 (985)
Q Consensus 215 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 283 (985)
.-..++|.|..|+|||||++.++...... ..+++..-.+...+.++.+.+...-... ..+......
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 45689999999999999999998742211 1233333333344555555554432111 111111111
Q ss_pred -HHHHHHHHh--cCceEEEEecCC
Q 001993 284 -VLKQLRESI--EGKKFFLVLDDV 304 (985)
Q Consensus 284 -~~~~l~~~l--~~k~~LlVlDdv 304 (985)
..-.+.+++ +++.+|+++||+
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 222344555 589999999999
No 490
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=92.84 E-value=0.17 Score=51.22 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=20.0
Q ss_pred EEEEEEccCCchHHHHHHHHh
Q 001993 217 TIISITGMGGIGKTTLAKLIF 237 (985)
Q Consensus 217 ~vv~I~G~gGiGKTtLa~~v~ 237 (985)
+++.|+|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999987
No 491
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.82 E-value=0.4 Score=50.86 Aligned_cols=56 Identities=20% Similarity=0.323 Sum_probs=40.2
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHHHHHHhcCC
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKAILESLKGS 274 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 274 (985)
-.++.|-|.+|+|||++|..++.+.-.... ..++|++. ..+..++...++....+.
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~-~~vly~Sl--Em~~~~l~~R~la~~s~v 74 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGG-YPVLYFSL--EMSEEELAARLLARLSGV 74 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTS-SEEEEEES--SS-HHHHHHHHHHHHHTS
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcC-CeEEEEcC--CCCHHHHHHHHHHHhhcc
Confidence 358999999999999999999985333322 56676654 446677888888877654
No 492
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.81 E-value=0.16 Score=54.79 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=34.4
Q ss_pred CEEEEEEccCCchHHHHHHHHhcchhhhccCCceEEEEeCCCCCHHHHHHH
Q 001993 216 PTIISITGMGGIGKTTLAKLIFNDNEVRNHFNEKIWVCVSEPFDDIRIAKA 266 (985)
Q Consensus 216 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 266 (985)
.+++.+.|.|||||||+|...+- ........++-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 36899999999999999988665 33333344677776666665555443
No 493
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=92.77 E-value=0.21 Score=51.63 Aligned_cols=77 Identities=12% Similarity=0.156 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc-ccCcHHHHHHHHHHHHhhhchhhHHHH
Q 001993 4 AIVSTILEQLALILVEQTAAGVRLIAGAEEEVENLHRRFHLIKAVVEDAEKR-QMKETAVRVWLDDLKHASYDMEDVLDE 82 (985)
Q Consensus 4 ~~~~~~~~kl~~~~~~~~~~e~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~-~~~~~~~~~wl~~l~~~~yd~ed~ld~ 82 (985)
+.|..+++.|-. ........+.-++.+++-++.+++.+|.||+..... +........+..++-..||++|+++|-
T Consensus 296 GyVdFlL~NLkd----fq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDa 371 (402)
T PF12061_consen 296 GYVDFLLKNLKD----FQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDA 371 (402)
T ss_pred cHHHHHHhhHHH----HhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeeh
Confidence 345666666666 333344556678999999999999999999987443 444445889999999999999999998
Q ss_pred HH
Q 001993 83 WN 84 (985)
Q Consensus 83 ~~ 84 (985)
+.
T Consensus 372 Ci 373 (402)
T PF12061_consen 372 CI 373 (402)
T ss_pred hh
Confidence 74
No 494
>PRK13947 shikimate kinase; Provisional
Probab=92.75 E-value=0.069 Score=52.60 Aligned_cols=21 Identities=38% Similarity=0.517 Sum_probs=19.5
Q ss_pred EEEEEccCCchHHHHHHHHhc
Q 001993 218 IISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~ 238 (985)
-|.|+|++|+||||+|+.+++
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 389999999999999999987
No 495
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.75 E-value=0.36 Score=53.37 Aligned_cols=105 Identities=20% Similarity=0.281 Sum_probs=57.3
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhcchhh----hccCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFNDNEV----RNHFNEKIWVCVSEPFDDIRIAKAILESLKGSATNAVESETVLKQLR 289 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 289 (985)
..++=+-|||..|.|||.|.-.+|+...+ +-||. ....++-+.+..-........ .+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~~~l~----~va 121 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQDDPLP----QVA 121 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCCccHH----HHH
Confidence 45678999999999999999999985332 22332 233333333322111222222 333
Q ss_pred HHhcCceEEEEecCCCCCCccc---HHHHHhhhcCCCCCcEEEEEcCchhhHH
Q 001993 290 ESIEGKKFFLVLDDVWTEEPQN---WEQLLGCLRCGSKESRILVTTRNEKVAI 339 (985)
Q Consensus 290 ~~l~~k~~LlVlDdv~~~~~~~---~~~l~~~l~~~~~gs~iivTtR~~~v~~ 339 (985)
+.+.++..||.||++.=.+..+ ...+...+- ..|. |||+|-+.....
T Consensus 122 ~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~~P~~ 171 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSNRPPED 171 (362)
T ss_pred HHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCCCChHH
Confidence 4456677799999974333222 122222222 3454 666766655543
No 496
>PLN02348 phosphoribulokinase
Probab=92.74 E-value=0.39 Score=52.81 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=23.1
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+.+.+|+|.|.+|+||||+|+.+.+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999987
No 497
>PRK06217 hypothetical protein; Validated
Probab=92.74 E-value=0.07 Score=53.24 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=20.1
Q ss_pred EEEEEccCCchHHHHHHHHhcc
Q 001993 218 IISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 218 vv~I~G~gGiGKTtLa~~v~~~ 239 (985)
.|.|.|.+|+||||+|+.+...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 498
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.73 E-value=0.1 Score=52.83 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=22.8
Q ss_pred CCCEEEEEEccCCchHHHHHHHHhc
Q 001993 214 QRPTIISITGMGGIGKTTLAKLIFN 238 (985)
Q Consensus 214 ~~~~vv~I~G~gGiGKTtLa~~v~~ 238 (985)
+...+|+|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999987
No 499
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.73 E-value=0.01 Score=60.17 Aligned_cols=61 Identities=26% Similarity=0.282 Sum_probs=34.4
Q ss_pred ccCCCCCeEecCCCCCccccchhhcCCCCCcEeeccCcccccccch--hhhhccccceeecccccc
Q 001993 622 KKLIHLRYLALGENPWIKELPEALCELCNLQTLDVSLCHYLKRLPE--RIGQLINLRHLMNSKEEW 685 (985)
Q Consensus 622 ~~l~~Lr~L~L~~~~~i~~lP~~i~~L~~L~~L~l~~~~~l~~lP~--~i~~L~~L~~L~l~~n~~ 685 (985)
.+|+.|++|.|+-|. |+.|-+ +..|++|+.|.|+.|. +..+-+ -+.+|++|+.|-|..|-|
T Consensus 38 ~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPC 100 (388)
T ss_pred HhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCc
Confidence 456666666666666 555543 5566666666666655 443321 234555666666655555
No 500
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.72 E-value=0.07 Score=52.05 Aligned_cols=21 Identities=52% Similarity=0.737 Sum_probs=18.3
Q ss_pred EEEEccCCchHHHHHHHHhcc
Q 001993 219 ISITGMGGIGKTTLAKLIFND 239 (985)
Q Consensus 219 v~I~G~gGiGKTtLa~~v~~~ 239 (985)
|.|+|.+|+|||||++.+++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 689999999999999999873
Done!